Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 89 of 402
Found at i:12851894 original size:26 final size:26
Alignment explanation
Indices: 12851864--12851916 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12851854 GTTGACTTAG
*
12851864 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAATCTAA
* *
12851890 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATAGAGTTCATCCCCAATCTAA
12851916 G
1 G
12851917 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAATCTAA
Found at i:12852267 original size:159 final size:158
Alignment explanation
Indices: 12851890--12852392 Score: 413
Period size: 159 Copynumber: 3.2 Consensus size: 158
12851880 CCCAGTCTAA
* * ** * *
12851890 GCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGCATTCCGACAGCAGGATC-GAT
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGAT
* * * ** * *
12851954 AGCTCGCAGGGGGGACCGGACCGATCCCTGTTTTGTGCATTCTGCCTCTCTGGCCAGCTGAGCGC
65 AGCACGCAGGGGGGACCGAACCGATCCCCGACTTGTGCATTATGCCTCTCTGGCCAGCTCAGCGC
* *
12852019 CCACACGCCCGTTTCTTGGGTTGGCTTAG
130 CCACACGCCCGTTTCATGGGTTGACTTAG
* * ** * * *
12852048 GCATAGGGAGTTCATTCCATGTCTAA-ACCCCAGCCGGACCGAGGGTTGTGGCAACGGGATCGGA
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAGCAGGATCGGA
* * * * *
12852112 -AGCACGCAGAGGGGGATCGAACTGATCCCCGACTTGTGCATTATGCCTCTTTGGCTAGCTCAGT
64 TAGCACGCAG-GGGGGACCGAACCGATCCCCGACTTGTGCATTATGCCTCTCTGGCCAGCTCAGC
* *
12852176 GCCCGCACGCTCGTTTCATGGGTTGACTTAG
128 GCCCACACGCCCGTTTCATGGGTTGACTTAG
* * * * *
12852207 GCATACGGAGTTCATTACTAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATC-GAC
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGAT
* * * * * * * * ** *
12852271 AGCATGTAGGGGGAGACCGAGCCAATCCCCTG-CTTGCGCTTTCTGCCTCTCCGGCTGGCTGAGC
65 AGCACGCAGGGGG-GACCGAACCGATCCCC-GACTTGTGCATTATGCCTCTCTGGCCAGCTCAGC
* * * * ** * *
12852335 ACCCGCGCGCTCGTTTTGTGGGTAGGCTTAG
128 GCCCACACGCCCGTTTCATGGGTTGACTTAG
*
12852366 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
12852393 CCCCAACCGG
Statistics
Matches: 274, Mismatches: 61, Indels: 19
0.77 0.17 0.05
Matches are distributed among these distances:
157 6 0.02
158 57 0.21
159 206 0.75
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGATA
GCACGCAGGGGGGACCGAACCGATCCCCGACTTGTGCATTATGCCTCTCTGGCCAGCTCAGCGCC
CACACGCCCGTTTCATGGGTTGACTTAG
Found at i:12852410 original size:159 final size:158
Alignment explanation
Indices: 12851944--12852412 Score: 419
Period size: 159 Copynumber: 3.0 Consensus size: 158
12851934 ATTCCGACAG
* * * * ** *
12851944 CAGGATC-GATAGCTCGCAG-GGGGGACCGGACCGATCCCTGTTTTGTGCATTCTGCCTCTCTGG
1 CAGGATCGGA-AGCACGCAGAGGGGGACCGAACCAATCCCCGACTTGCGCATTCTGCCTCTCTGG
* * * *
12852007 CCAGCTGAGCGCCCACACGCCCGTTTCTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
65 CTAGCTGAGCGCCCGCACGCTCGTTT-TTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * *
12852072 AAACCCCAGCCGGACCGAGGGTTGTGGCAA
129 AAGCCCCAACCGGACCGAGGGTTGCGGCAA
* * ** * * *
12852102 CGGGATCGGAAGCACGCAGAGGGGGATCGAACTGATCCCCGACTTGTGCATTATGCCTCTTTGGC
1 CAGGATCGGAAGCACGCAGAGGGGGACCGAACCAATCCCCGACTTGCGCATTCTGCCTCTCTGGC
* * * * *
12852167 TAGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTAC-TAGTCT
66 TAGCTGAGCGCCCGCACGCTCGTTT-TTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCT
***** * * *
12852231 AAGATTGGACCAGACCGAGGGTTGCGGTAG
129 AAGCCCCAACCGGACCGAGGGTTGCGGCAA
* * * * *
12852261 CAGGATC-GACAGCATGTAG-GGGGAGACCGAGCCAATCCCCTG-CTTGCGCTTTCTGCCTCTCC
1 CAGGATCGGA-AGCACGCAGAGGGG-GACCGAACCAATCCCC-GACTTGCGCATTCTGCCTCTCT
* * * * *
12852323 GGCTGGCTGAGCACCCGCGCGCTCGTTTTGTGGGTAGGCTTAGGCATACAGAGTTCATTCCATGT
63 GGCTAGCTGAGCGCCCGCACGCTCGTTTT-TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
*
12852388 CTAAGCCCCAACCGGACTGAGGGTT
127 CTAAGCCCCAACCGGACCGAGGGTT
12852413 ATGGCAGCAA
Statistics
Matches: 244, Mismatches: 59, Indels: 15
0.77 0.19 0.05
Matches are distributed among these distances:
158 21 0.09
159 221 0.91
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
CAGGATCGGAAGCACGCAGAGGGGGACCGAACCAATCCCCGACTTGCGCATTCTGCCTCTCTGGC
TAGCTGAGCGCCCGCACGCTCGTTTTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCCCCAACCGGACCGAGGGTTGCGGCAA
Found at i:12853085 original size:26 final size:26
Alignment explanation
Indices: 12853049--12853101 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12853039 GTTGGCTTAG
12853049 GCATACAGAGTTCATT-CCACGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
12853075 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12853101 G
1 G
12853102 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12853792 original size:26 final size:26
Alignment explanation
Indices: 12853756--12853834 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
12853746 GTTGACTTAG
*
12853756 GCATACGGAGTTCATCCCCCAG-CTAA
1 GCATACAGAGTTCAT-CCCCAGTCTAA
*
12853782 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
12853808 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12853834 G
1 G
12853835 ATCGGATCAG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 6 0.13
26 41 0.87
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12854163 original size:159 final size:156
Alignment explanation
Indices: 12853808--12854202 Score: 422
Period size: 159 Copynumber: 2.5 Consensus size: 156
12853798 CCCAGTCTAA
* * * * *
12853808 GCATACGG-AGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTATGGCAGCAGCATCGGT
1 GCATA-GGAAGTTCATTCCCAGTCTAAGATC-AATCGGACCGAGGGTTATGGCAGCAGGATCGAT
* *
12853872 AGCACGCAGGGGGGATCGGGCCGATCTCCGGCTTGTGCATTTGCCTCTCCGATTGGCTAAGTGCC
64 AGCACGCAGGGGGGATCGGGCCGATCTCCGGCTTGCGCATTTGCCTCTCAGATTGGCTAAGTGCC
* * * * **
12853937 TGTATACCCGTTTCATGGGTTGGTTTAG
129 CGCATACACATTTCATGGGTTGACTTAG
* ** * * ** * *
12853965 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTGGGACCGAC
1 GCATAGGAAGTTCATTCCCA-GTCTAAG-ATCAATCGGACCGAGGGTTATGGCAGCAGGATCGAT
12854029 AGCACGCAGAGGGGGATCGGGCCGATC-CTCGGCTTGCGCATTATGCCTCTCTAG-TTGGCTCAA
64 AGCACGCAG-GGGGGATCGGGCCGATCTC-CGGCTTGCGCATT-TGCCTCTC-AGATTGGCT-AA
* *
12854092 -TGCCCGCATGCACATTTCGTGGGTTGACTTAG
124 GTGCCCGCATACACATTTCATGGGTTGACTTAG
* * *
12854124 GCATATGAAGTTCATTCCCAGTCTAAGATCATATTGGACCGAGGGTTACGGCAGCAGGATCGATA
1 GCATAGGAAGTTCATTCCCAGTCTAAGATCA-ATCGGACCGAGGGTTATGGCAGCAGGATCGATA
12854189 GCACGCAGGGGGGA
65 GCACGCAGGGGGGA
12854203 CTGAGCCGAT
Statistics
Matches: 193, Mismatches: 35, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
156 5 0.03
157 52 0.27
158 38 0.20
159 92 0.48
160 6 0.03
ACGTcount: A:0.20, C:0.24, G:0.32, T:0.24
Consensus pattern (156 bp):
GCATAGGAAGTTCATTCCCAGTCTAAGATCAATCGGACCGAGGGTTATGGCAGCAGGATCGATAG
CACGCAGGGGGGATCGGGCCGATCTCCGGCTTGCGCATTTGCCTCTCAGATTGGCTAAGTGCCCG
CATACACATTTCATGGGTTGACTTAG
Found at i:12854294 original size:158 final size:155
Alignment explanation
Indices: 12853808--12854298 Score: 461
Period size: 158 Copynumber: 3.1 Consensus size: 155
12853798 CCCAGTCTAA
* * * * *
12853808 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTATGGCAGCAGCATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AATCGGACCGAGGGTTATGGCAGCAGGATCGATA
* * *
12853873 GCACGCAGGGGGGATCGGGCCGATCTCCGGCTTGTGCATTTGCCTCTCCGATTGGCTAAGTGCCT
65 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTTGCCTCTCCGGTTGGCTAAGTGCC-
* * *
12853938 GTATAC-CCGTTTCATGGGTTGGTTTAG
129 -TACACGCCGTTTCGTGGGTTGGCTTAG
* ** * * ** * *
12853965 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTGGGACCGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAATCGGACCGAGGGTTATGGCAGCAGGATCGAT
* **
12854029 AGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCTAGTTGGCTCAA-T
64 AGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATT-TGCCTCTCCGGTTGGCT-AAGT
** * * *
12854093 GCCCGCATGCACATTTCGTGGGTTGACTTAG
126 GCCTACACGC-CGTTTCGTGGGTTGGCTTAG
* * * *
12854124 GCATATGAAGTTCATTCCCAGTCTAAGATCATATTGGACCGAGGGTTACGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-ATCGGACCGAGGGTTATGGCAGCAGGATCGATA
* * * ** * *
12854189 GCACGCAGGGGGGA-CTGAGCCGATCCCCAAG-TTACGCATTCTTTCTCTCCGGTTGGCTGAGGG
65 GCACGCAGGGGGGATC-GGGCCGATCCCC-GGCTTGCGCATT-TGCCTCTCCGGTTGGCTAAGTG
*
12854252 CCTACACGCTCGTTTCGTGGGATGGCTTAG
127 CCTACACGC-CGTTTCGTGGGTTGGCTTAG
12854282 GCATACGGAGTTCATTC
1 GCATACGGAGTTCATTC
12854299 GATGTCTAAG
Statistics
Matches: 262, Mismatches: 60, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 56 0.21
158 109 0.42
159 89 0.34
160 5 0.02
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAATCGGACCGAGGGTTATGGCAGCAGGATCGATAG
CACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTTGCCTCTCCGGTTGGCTAAGTGCCTA
CACGCCGTTTCGTGGGTTGGCTTAG
Found at i:12854669 original size:26 final size:26
Alignment explanation
Indices: 12854639--12854691 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12854629 GTTGACTTAG
* *
12854639 GCATACGGAGTTCACCCCCAGTCTAA
1 GCATACAGAGTTAACCCCCAGTCTAA
**
12854665 GCATACAGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAACCCCCAGTCTAA
12854691 G
1 G
12854692 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTAACCCCCAGTCTAA
Found at i:12856768 original size:26 final size:26
Alignment explanation
Indices: 12856732--12856784 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12856722 GCTGGCTTAG
*
12856732 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12856758 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12856784 G
1 G
12856785 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12857266 original size:354 final size:352
Alignment explanation
Indices: 12856291--12857320 Score: 989
Period size: 354 Copynumber: 2.9 Consensus size: 352
12856281 ACAGCGCAGG
* * * * * * * * *
12856291 GGGGGATCGGGTCGGTCCCCGACTTGTGCATTCTACCTCTCAGGCCGGCTGAGGGCCTGCACGCT
1 GGGGGATCGGGT-GATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCT
* * * **
12856356 CGTTTCATGGGTTGCCTTAGGCGTACGGAGTTCCT-TCCATGCCTAAGCATACGGAGTTCATTCC
65 CGTTTC-TGGGTTG-CTTAGGCATACGGAGTTCATCCCCA-GTTTAAGCATACGGAGTTCATTCC
*
12856420 CAGTCTAAGATCGGATCGGACTGAGGGTTGCGACAGCAGGACTAGCAGCAGGATCGACAGCATGC
127 CAGTCTAAGATCGGATCGGACTGAGGGTTGCGGCAGCAGGA-T-----C-GG-T----AGCATGC
* * *
12856485 AAGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCT-TCGGCCGGCTGAGCGCCCGCAC
180 AGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCT-GGCTGGCTGAGCGCCCGCAC
* * * * * *
12856549 GCTTGTTTTATGGGTTGGTTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGA
244 GCTAGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAA
* ** * *
12856614 GGGTTGTGGCAGTCGAACCGGTAGCGGGATCGGTGACTCACAGA
309 GGGTTGTGGCAGACGAACCGACAGCGGGATCGGTAACACACAGA
* * *** *
12856658 GGGGGATCGGGTTGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCCTTTCCGACCG-AC-C
1 GGGGGATCGGG-TGATCCCCGACTTGCGCATTATGCCTCTCCGACCGG-CTCAGCGCCCGCACGC
12856721 -CG---CT--G--GCTTAGGCATACGGAGTTCATCCCCA-TTCTAAGCATACGGAGTTCATTCCC
64 TCGTTTCTGGGTTGCTTAGGCATACGGAGTTCATCCCCAGTT-TAAGCATACGGAGTTCATTCCC
* * * * ** *
12856777 AGTCTAAGATTGGATCGGAC-CATGGGTTGCAGCAGTAGGATCGACAGCACGCAGGGGGGACCGG
128 AGTCTAAGATCGGATCGGACTGA-GGGTTGCGGCAGCAGGATCGGTAGCATGCAGGGGGGACCGG
** * * *
12856841 GTTGATCCCCGGCTTGCGCATTCTGCCTCTAC-GGCTGGCTCAGCGCCCGTACGCTAGTTTTGTG
192 GCCGATCCCCGGCTTACGCATTCTGCCTCT-CTGGCTGGCTGAGCGCCCGCACGCTAGTTTTGTG
* * **
12856905 TGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATTAAGGGTTGTGGCA-
256 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAG
* * * *
12856969 ACAGGA-TGACAGTGGGATCGGTAACACATAGA
321 AC-GAACCGACAGCGGGATCGGTAACACACAGA
*
12857001 GGGGGATCGGGCTGATCCCTGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCT
1 GGGGGATCGGG-TGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCT
* * *
12857066 CGTTTCGTGGGTTGACTTAGGCAAACAGAGTTCATCCCCAGTTTAAGCATACGGAGTTCATTCCT
65 CGTTTC-TGGGTTG-CTTAGGCATACGGAGTTCATCCCCAGTTTAAGCATACGGAGTTCATTCCC
* * * *
12857131 AGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCATGTAGGGGGGACCGGA
128 AGTCTAAGATCGGATCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCATGCAGGGGGGACCGGG
* * * * * * * * * *
12857196 CCGATGCCTGACTTACACATTTTGCCCCTCTGACTGGCTGAGCACCCGCACG-TCCGTTTCGTGG
193 CCGATCCCCGGCTTACGCATTCTGCCTCTCTGGCTGGCTGAGCGCCCGCACGCT-AGTTTTGTGG
* * * * *
12857260 GTTGGCTTAGGCATACGTAGTTCATTCCATGTCTGAGCCCCAGTCAGACCGATGGTTGTGG
257 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGG
12857321 TAGCGGGACT
Statistics
Matches: 539, Mismatches: 100, Indels: 61
0.77 0.14 0.09
Matches are distributed among these distances:
342 7 0.01
343 66 0.12
344 129 0.24
345 2 0.00
348 1 0.00
349 2 0.00
350 1 0.00
351 1 0.00
353 3 0.01
354 193 0.36
355 5 0.01
356 73 0.14
357 4 0.01
359 1 0.00
361 1 0.00
362 1 0.00
365 2 0.00
366 1 0.00
367 40 0.07
368 6 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (352 bp):
GGGGGATCGGGTGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTC
GTTTCTGGGTTGCTTAGGCATACGGAGTTCATCCCCAGTTTAAGCATACGGAGTTCATTCCCAGT
CTAAGATCGGATCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCATGCAGGGGGGACCGGGCCG
ATCCCCGGCTTACGCATTCTGCCTCTCTGGCTGGCTGAGCGCCCGCACGCTAGTTTTGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGACGAA
CCGACAGCGGGATCGGTAACACACAGA
Found at i:12857579 original size:159 final size:157
Alignment explanation
Indices: 12857112--12857614 Score: 410
Period size: 159 Copynumber: 3.2 Consensus size: 157
12857102 CCCAGTTTAA
* * * *
12857112 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGACCGGTA
* * * * * * * * * * * *
12857177 GCATGTAGGGGGGACCGGACCGATGCCTGACTTACACATTTTGCCCCTCTGACTGGCTGAGCACC
66 GCACGTCGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCAGTC-GGTTGAGCACC
*
12857242 CGCACG-TCCGTTTCGTGGGTTGGCTTAG
130 CGCACGCT-CGTTTCGTGGGTTGACTTAG
* * ** * * * * * *
12857270 GCATACGTAGTTCATT-CCATGTCTGAGCCCCAG-TCAGACCGATGGTTGTGGTAGCGGGACTGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGTGGTAGCAGGACCGG
* * * * *
12857333 CAGCACG-CAGAGGGGGACCGGGCCGATCCTCGGCTTGCGTATTATGCCTCTTCAATCGGCTCTG
64 TAGCACGTC-G-GGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTC-TCAGTCGG-T-TG
* * * * *
12857397 TG--CCAGCACGCTCATTTCATGGGTTGACTTAT
124 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
12857429 GCATATGGATTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGACCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGACCGGTA
** * *
12857494 GCACGTCGGGGAGGACCGGGCAAATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCAC
66 GCACGTCGGGG-GGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCT-CAGTCGGTTGAGCAC
* * *
12857559 CCGCATGCTCGTTTCGTGGGTTGGCTGAG
129 CCGCACGCTCGTTTCGTGGGTTGACTTAG
12857588 GCATACAGG-GTTCATT-CCATGTCTAAG
1 GCATAC-GGAGTTCATTCCCA-GTCTAAG
12857615 CATATGGAGT
Statistics
Matches: 259, Mismatches: 69, Indels: 33
0.72 0.19 0.09
Matches are distributed among these distances:
157 5 0.02
158 59 0.23
159 182 0.70
160 10 0.04
161 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGACCGGTA
GCACGTCGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCAGTCGGTTGAGCACCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:12857617 original size:26 final size:26
Alignment explanation
Indices: 12857588--12857640 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
12857578 GTTGGCTGAG
12857588 GCATACAGG-GTTCATT-CCATGTCTAA
1 GCATA-AGGAGTTCATTCCCA-GTCTAA
*
12857614 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
12857640 G
1 G
12857641 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 19 0.79
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:12858590 original size:184 final size:185
Alignment explanation
Indices: 12858309--12858643 Score: 476
Period size: 184 Copynumber: 1.8 Consensus size: 185
12858299 GCCCCAGCCA
* * * **
12858309 GATCGAGGGTTGTGGCAGCAGGATCGGCAGCACATAAAGGGGGATCGGGCTGATCGTCGACTTGC
1 GATCGAGGGTTGCGGCAGCAGGATCGGCAGCACAGAAAGGGGGAACGGGCTGATCCCCGACTTGC
* * * * *
12858374 GCATTATGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATATA
66 GCATTATACCTCTCCGGTCGGCTGAACACCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATAGA
12858439 GAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCG
131 GAGTTCAT-CCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCG
* * * *
12858494 GATCGAGGGTTGCGGCAGTAGGATCGGCGGCAC-GCAAGGGGGAACGGGCTGATCCCCGGCTTGC
1 GATCGAGGGTTGCGGCAGCAGGATCGGCAGCACAGAAAGGGGGAACGGGCTGATCCCCGACTTGC
* * * *
12858558 GCTTTCTACCTCTCCGGTCGGCTGAACACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
66 GCATTATACCTCTCCGGTCGGCTGAACACCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATAGA
*
12858623 GAGTTCATTCCATGTCTAAGC
131 GAGTTCATCCCATGTCTAAGC
12858644 CCCAGTCGGA
Statistics
Matches: 130, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
183 3 0.02
184 97 0.75
185 30 0.23
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (185 bp):
GATCGAGGGTTGCGGCAGCAGGATCGGCAGCACAGAAAGGGGGAACGGGCTGATCCCCGACTTGC
GCATTATACCTCTCCGGTCGGCTGAACACCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATAGA
GAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCG
Found at i:12858695 original size:21 final size:21
Alignment explanation
Indices: 12858671--12858720 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
12858661 TTCTGGCAGC
12858671 GGGACCGGCAGCACACAGAGG
1 GGGACCGGCAGCACACAGAGG
* **
12858692 GGGACCGACAGCATGCAGAGG
1 GGGACCGGCAGCACACAGAGG
12858713 GGGACCGG
1 GGGACCGG
12858721 GCCGATCCCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.46, T:0.02
Consensus pattern (21 bp):
GGGACCGGCAGCACACAGAGG
Found at i:12859391 original size:26 final size:26
Alignment explanation
Indices: 12859355--12859407 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12859345 TTGGTCTGAT
12859355 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* *
12859381 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
12859407 C
1 C
12859408 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:12859695 original size:171 final size:171
Alignment explanation
Indices: 12859380--12859749 Score: 379
Period size: 171 Copynumber: 2.2 Consensus size: 171
12859370 AACTCCGTAT
* * *
12859380 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * ** * * * **
12859445 TCGATCGGAAAGGCATAATGCGTAAGCCGGGGATCAGTCTGGTCCTCTTCTACATGCTGTCGATC
66 CCGATCGGAAAGGCAGAATGCGCAAGCCGGGGATCAGCCTAATCCCCTCCTACACGCTACCGATC
12859510 CCGCTACCGGTCCTGCTGACACAAACCTCGGTCCGGCTAGG
131 CCGCTACCGGTCCTGCTGACACAAACCTCGGTCCGGCTAGG
** ** *
12859551 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGTGTGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * * *
12859615 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GACCTAATCCCCTCCTTCGCGCTACCGA
65 GCCGATCGGAAAGGCAGAATGCGCAAGCCGGGGATCAG-CCTAATCCCCTCCTACACGCTACCGA
* * * * * * ** *
12859679 TCCTGCTACTGGTCCTGCT-ATCGCAACCCTTGATCCAATCT-GA
129 TCCCGCTACCGGTCCTGCTGA-CACAAACCTCGGTCC-GGCTAGG
*
12859722 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
12859750 TTAGACATGG
Statistics
Matches: 161, Mismatches: 33, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
170 3 0.02
171 155 0.96
172 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCGATCGGAAAGGCAGAATGCGCAAGCCGGGGATCAGCCTAATCCCCTCCTACACGCTACCGATC
CCGCTACCGGTCCTGCTGACACAAACCTCGGTCCGGCTAGG
Found at i:12859761 original size:26 final size:26
Alignment explanation
Indices: 12859723--12859775 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12859713 CCAATCTGAT
12859723 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
12859749 CTTAGACAT-GGAATGGACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12859775 C
1 C
12859776 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12860140 original size:160 final size:157
Alignment explanation
Indices: 12859748--12860181 Score: 395
Period size: 160 Copynumber: 2.7 Consensus size: 157
12859738 AACTCCGTAT
* * * *
12859748 GCTTAGACATGGAATGGACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
12859813 CCAGTTGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCACTCCCCCGTGAGTACTATCGGTCC
66 CCA-TCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCACTCCCCCCTGAGTACTACCGGTCC
* * * * ** *
12859878 TGCTGTCGCAACCTTCAGTCTGGTTTGA
130 CGCTGCCACAACCCTCAGTCTGACTGGA
* *** * ** * * * *
12859906 TCTTAGATTGGGAATAAACTCCGTATGCCTAAGTTAACCCATGAAACAAGCGTGCAGGTGCTGAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * ** *
12859971 CCAATCGGAGAGGCATAATGCGCAAGCC-GAGGTTCGACCCGA-TCCCCCCTCTGCGTGTTGCCG
66 CC-ATCGGAGAGGCAGAATGCGCAAGCCAG-GGATCGACCC-ACT-CCCCC-CTGAGTACTACCG
*
12860034 GTCCCGCTGCCACAACCCTCAGTCTGACTGGG
126 GTCCCGCTGCCACAACCCTCAGTCTGACTGGA
* * * *
12860066 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATACGGGCGCTCAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * **
12860131 CCGATCGGAGATGTAGAATGCACAAGTCGGGGATCGGCCCGGTCCCCCCTG
66 CC-ATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCACTCCCCCCTG
12860182 TGTGCTATCG
Statistics
Matches: 214, Mismatches: 55, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
157 1 0.00
158 88 0.41
159 12 0.06
160 112 0.52
161 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCACTCCCCCCTGAGTACTACCGGTCCC
GCTGCCACAACCCTCAGTCTGACTGGA
Found at i:12860276 original size:26 final size:26
Alignment explanation
Indices: 12860225--12860277 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12860215 TCGGTCTGAT
**
12860225 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
12860251 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
12860277 C
1 C
12860278 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:12861000 original size:26 final size:26
Alignment explanation
Indices: 12860951--12861000 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
12860941 GGCTCAAAAT
**
12860951 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACAACGTATG
12860977 CTTAGACAT-GGAATGAACAACGTA
1 CTTAGAC-TGGGAATGAACAACGTA
12861001 CGCCTAAGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACAACGTATG
Found at i:12862592 original size:158 final size:154
Alignment explanation
Indices: 12862321--12862823 Score: 441
Period size: 158 Copynumber: 3.2 Consensus size: 154
12862311 GGTCCATTTC
* * * * **
12862321 GATCTTTGACTGGGAATGAACTCCATGTGCCTAAGCCAACCCACGAAATGAGCGTGCAAGCGCTC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * *
12862386 AGCCCA-CCGGAGAGGCAGAATGCACAAGTTAGGGACCGG-CCTAGTCCCCCCTGCGTGCTGGAG
66 AG-CCAGTCGGAGAGGCAGAATGCACAAG-CAGGGATCGGCCCGA-TCCCCCCTGCGTGCTGCAG
12862449 ATCCTGTAGCCATAACCTTCAGTCCGATCT
128 ATCCTGT-GCCA-AACC-TCAGTCCGATCT
* * * * *
12862479 GATCTTAGACTGGGAATAAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * *
12862544 AGCCGGTCGGAGAAGCATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTGC-TGCTATC-G
66 AGCCAGTCGGAGAGGCAGAATGCACAAG-CAGGGATCGGCCCGATCCCCC-CTGCGTGCT-GCAG
* *
12862607 ATCCCGCTGCCACAACCCTCAGTCCG-GCT
128 ATCCTG-TGCCA-AA-CCTCAGTCCGATCT
** * ** *
12862636 AGGGCTTAGA-TATGGAATGAACTCCGTATGCCTCAA-CCAACCCGTGAAAC-AGGCGTACGGGC
1 -GATCTTAGACT-GGGAATGAACTCCGTATGCCT-AAGCCAACCCACGAAACGA-GCGTGCGGGC
** *
12862698 GCTCAGCCAGTCGGAGAGGCAGAATGCGTAAGCTGAGGATCGGCCCGATCCCCCCTGCGT-CTGC
62 GCTCAGCCAGTCGGAGAGGCAGAATGCACAAGCAG-GGATCGGCCCGATCCCCCCTGCGTGCTG-
* * *
12862762 CA-ATCCTACTGTCGCAATCCTCGGTCCGATCT
125 CAGATCCT-GTG-C-CAAACCTCAGTCCGATCT
12862794 GATCTTAGACTGGGAATGAACTCCGTATGC
1 GATCTTAGACTGGGAATGAACTCCGTATGC
12862824 TTAGGCTAGG
Statistics
Matches: 276, Mismatches: 50, Indels: 39
0.76 0.14 0.11
Matches are distributed among these distances:
157 55 0.20
158 207 0.75
159 14 0.05
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (154 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
AGCCAGTCGGAGAGGCAGAATGCACAAGCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCAGATC
CTGTGCCAAACCTCAGTCCGATCT
Found at i:12862826 original size:26 final size:26
Alignment explanation
Indices: 12862797--12862849 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12862787 CCGATCTGAT
12862797 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
12862823 CTTAGGCTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
12862849 C
1 C
12862850 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:12862915 original size:669 final size:669
Alignment explanation
Indices: 12861131--12863046 Score: 2180
Period size: 676 Copynumber: 2.8 Consensus size: 669
12861121 CGGTTTGGTT
* * * * *
12861131 TGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATAAAACGAGCTTACGGGTGCT
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCT
* * * *
12861196 GAGCCGATCGAAGAAGTATAATGCGCAAGCAGGGGATCGACCCGATCCCCTTCTGTGTGCTGTCG
66 GAGCCGATCGGAGAAGCATAATGCACAAGCA-GGGATCGACCCGATCCCCTTCTG-CTGCTGTCG
* *
12861261 GTCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTGGACATGGAATGAACTCCCTATGCCTAAA
129 GTCCCGCTGCCACAACCCTCG-TCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCT-AA
* * *
12861326 CCAACCCACGAAACGGGCGTACGGGAGCTCAACCA-ACTGGAGAGGCAAAATGCGCAAGCTTG-G
192 CCAACCCACGAAAC-GGCGTACGGGCGCTCAGCCAGAC-GGAGAGGCAGAATGCGCAAGC-TGAG
* * * *
12861389 GATCGGCCTGATCCCCCCTGCGTGTTGCCGATCCTGCTATCGCAACCCCCGGTCC-AGTCTGATC
254 GATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCTGCTGTCGCAACCCTCGGTCCGA-TCTGATC
* * ** *
12861453 TTAGACTAAGAATGAACTTTGTATGCTTAGATTGGGGATGAACTCCGTATACCTAAGTCAACCCA
318 TTAGACTGAGAATGAACTTCGTATGCTTAGGCTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
** * * *** *
12861518 CGAAACGAGCGTGCGGGCACCCAGCCGATTGGAGAGGCAGAATGCACAAGTTGGGGATCGACTCG
383 CGAAACGAGCGTGCGGGTGCTCAGCCGGTTGGAGAGGCAGAATGCACAAGCCAGGGATCGTCTCG
* * * *
12861583 GTCCTCCCTGCGTGCTGCCAATCCTGTTGCTGGTCCTGCTACCGCAACCTTCGGTCCGA-TCGAT
448 GTCC-CCCTGCGTGCTGTCAATCCTGCTGCTGGTCCTGCTACCGTAACCCTCGGTCC-ATTCGAT
* ** * *** * * ** **
12861647 CTTAGACT-GGAATGAACTCCATACG-CTTAGACATGGAATGAACTCTGTATGCCTAAGCCGACT
511 CTTTGACTGGGAATGAACTCCATGTGCCTAAGACAACCAACGAAATGAGCGTG-CTAAGCCGACT
** * * * *
12861710 CATAAAATGAGCGTGAGAGGTAGAATGCGCAAGCTAGGGACCGGCCTGGTCCCCCCTGCGTGCTA
575 C--AAAACCACCGTGAGAGGCAGAATGCACAAGCTAGGGACCGGCCTAGTCCCCCCTGCGTGCTA
** * * * *
12861775 TCGATCCTGCTGCCGCACCCCTCGGTCCGGTC
638 GAGATCCTGCTGCCACAACCCTCAGTCCGATC
* * * * *
12861807 CGATCTTCGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCACT
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCT
* * * ** *
12861872 GAGCCGATCGGAGAGGCATAATGCATAAGTCGGGGATCGAATC-AGTCCCCTTCTACGTGCTGTC
66 GAGCCGATCGGAGAAGCATAATGCACAAG-CAGGGATCGACCCGA-TCCCCTTCTGC-TGCTGTC
* * * * *
12861936 GGTCCCGATACCACAACCTTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGGCTAA
128 GGTCCCGCTGCCACAACCCTC-GTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * * * * *
12862001 GCCAACCCACGAAACGGATGTGCGGGCGCTCAGCC-GACCGAAAAGGCAGAATGCACAAGCTAAG
192 -CCAACCCACGAAACGG-CGTACGGGCGCTCAGCCAGA-CGGAGAGGCAGAATGCGCAAGCTGAG
* * * * *
12862065 GATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTTCGGTCTGATTT
254 GATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCTGCTGTCGCAACCCTCGGTCCGATCTGATCT
* * *
12862130 TAGACTGAGAATGAACTTCATATGCTTAGGCTGGGGATGAACTCCGTATGCCAAAGTCAACCCAG
319 TAGACTGAGAATGAACTTCGTATGCTTAGGCTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC
* * *
12862195 GAAATGAGCGTGCGGGTGCTCAGCCAGTTGGAGAGGTAGAATGCACAAGCCAGGGATCGGTCT-G
384 GAAACGAGCGTGCGGGTGCTCAGCCGGTTGGAGAGGCAGAATGCACAAGCCAGGGATC-GTCTCG
* * *
12862259 GTACCCCCTGCGTGCTGTCAATCCTGCTGTTGGTCCTGGT-GCGATAACCCTCGGTCCATTTCGA
448 GT-CCCCCTGCGTGCTGTCAATCCTGCTGCTGGTCCTGCTACCG-TAACCCTCGGTCCA-TTCGA
* *
12862323 TCTTTGACTGGGAATGAACTCCATGTGCCTAAGCCAACCCACGAAATGAGCGTGC-AAG-CG-CT
510 TCTTTGACTGGGAATGAACTCCATGTGCCTAAGACAACCAACGAAATGAGCGTGCTAAGCCGACT
** * *
12862385 C-AGCCCACCG-GAGAGGCAGAATGCACAAGTTAGGGACCGGCCTAGTCCCCCCTGCGTGCTGGA
575 CAAAACCACCGTGAGAGGCAGAATGCACAAGCTAGGGACCGGCCTAGTCCCCCCTGCGTGCTAGA
* *
12862448 GATCCTG-TAGCCATAACCTTCAGTCCGATC
640 GATCCTGCT-GCCACAACCCTCAGTCCGATC
* * * * *
12862478 TGATCTTAGACTGGGAATAAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTT
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCT
* * * * *
12862543 GAGCCGGTCGGAGAAGCATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTGCTGCTATCGA
66 GAGCCGATCGGAGAAGCATAATGCACAAG-CAGGGATCGACCCGATCCCCTTCTGCTGCTGTCGG
* * *
12862608 TCCCGCTGCCACAACCCTCAGTCCGGCTAGGGCTTAGATATGGAATGAACTCCGTATGCCTCAAC
130 TCCCGCTGCCACAACCCTC-GTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCT-AAC
** * *
12862673 CAACCCGTGAAACAGGCGTACGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGTAAGCTGAGGAT
193 CAACCCACGAAAC-GGCGTACGGGCGCTCAGCCAGACGGAGAGGCAGAATGCGCAAGCTGAGGAT
* * *
12862738 CGGCCCGATCCCCCCTGCGT-CTGCCAATCCTACTGTCGCAATCCTCGGTCCGATCTGATCTTAG
257 CGGCCCGATCCCCCCTGCGTGCTGCCGATCCTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAG
* * *
12862802 ACTGGGAATGAACTCCGTATGCTTAGGCTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAA
322 ACTGAGAATGAACTTCGTATGCTTAGGCTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAA
*
12862867 ACGAGCGTGCGGGTGCTCAGCCGGTTGGAGAGGCAGAATGCGCAAGCCAGGGATCAGT-TCGGTC
387 ACGAGCGTGCGGGTGCTCAGCCGGTTGGAGAGGCAGAATGCACAAGCCAGGGATC-GTCTCGGT-
* * *
12862931 CCCCCTGCGTGCTGTCAATCCTACTGCTGGTCCTGCTACCGTAACCCTTGGTCCAGTTCAATCTT
450 CCCCCTGCGTGCTGTCAATCCTGCTGCTGGTCCTGCTACCGTAACCCTCGGTCCA-TTCGATCTT
* * *
12862996 TGACTGGGAATGAACT-C-TGTAGGCCTAAGTCAACCAACAAAACGAGCGTGC
514 TGACTGGGAATGAACTCCATGT--GCCTAAGACAACCAACGAAATGAGCGTGC
12863047 GGGCACTGAG
Statistics
Matches: 1038, Mismatches: 176, Indels: 59
0.82 0.14 0.05
Matches are distributed among these distances:
667 3 0.00
668 2 0.00
669 247 0.24
670 133 0.13
671 172 0.17
672 5 0.00
675 12 0.01
676 411 0.40
677 23 0.02
678 16 0.02
679 14 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (669 bp):
TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCT
GAGCCGATCGGAGAAGCATAATGCACAAGCAGGGATCGACCCGATCCCCTTCTGCTGCTGTCGGT
CCCGCTGCCACAACCCTCGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAACCAA
CCCACGAAACGGCGTACGGGCGCTCAGCCAGACGGAGAGGCAGAATGCGCAAGCTGAGGATCGGC
CCGATCCCCCCTGCGTGCTGCCGATCCTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTG
AGAATGAACTTCGTATGCTTAGGCTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
GCGTGCGGGTGCTCAGCCGGTTGGAGAGGCAGAATGCACAAGCCAGGGATCGTCTCGGTCCCCCT
GCGTGCTGTCAATCCTGCTGCTGGTCCTGCTACCGTAACCCTCGGTCCATTCGATCTTTGACTGG
GAATGAACTCCATGTGCCTAAGACAACCAACGAAATGAGCGTGCTAAGCCGACTCAAAACCACCG
TGAGAGGCAGAATGCACAAGCTAGGGACCGGCCTAGTCCCCCCTGCGTGCTAGAGATCCTGCTGC
CACAACCCTCAGTCCGATC
Found at i:12863346 original size:26 final size:26
Alignment explanation
Indices: 12863310--12863388 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
12863300 CCGGTCCGAT
12863310 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
12863336 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
12863362 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
12863388 C
1 C
12863389 CTAAGTTAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:12864568 original size:158 final size:156
Alignment explanation
Indices: 12864065--12864568 Score: 483
Period size: 158 Copynumber: 3.2 Consensus size: 156
12864055 GTGGCTCAAA
*
12864065 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
* * * * * * *
12864130 GTAGGTTAGAGAGGCAGAATGTGCAAGCCAGGGATCAGCCT-GGTCCCCCATGTATGCTGTCGAT
66 GT-CGCTAGAGAGGCAGAATGCGCAAGCCAGGGATC-GACTCGGTCCCCC-TTTGTGCTATCGAT
* * **
12864194 CCTACTGTCGCAACCCTCGGTTCGGTCCA
128 CCTGCTGTCGCAACCCTCGGTCCGGTCTG
* ** ** * * *
12864223 ATCTTAGACTGGGAATGAACTCCGTATGCATAAGTTAACCCACAAAATGAGCGTACGAGCGCTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
* * * * * * * * * *
12864288 GCCGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCTCTGCGTGCTACCGGT
66 GTCGCTAG-AGAGGCAGAATGCGCAAGCCAGGGATCGACTCGGTCCCCCT-T-TGTGCTATCGAT
* * * *
12864353 CCCGCTGCCACAACCCTCGGTCTGG-CTGG
128 CCTGCTGTCGCAACCCTCGGTCCGGTCT-G
** * * * * *
12864382 GGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCGTGAAACGGGCATGCGGGCGCTC
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTC
* * * *
12864446 AGTCGACTAGAGAGGCAGAATGCACAAGTCGGGGATCGACTCGGTTCACCCTTTGTGCTATCGAT
65 AGTCG-CTAGAGAGGCAGAATGCGCAAGCCAGGGATCGACTCGG-TCCCCCTTTGTGCTATCGAT
*
12864511 CCTGCTGTCGCAACCCTCGATCCGGTCTG
128 CCTGCTGTCGCAACCCTCGGTCCGGTCTG
12864540 ATCTTAGACTGGGAATGAACTCCGTATGC
1 ATCTTAGACTGGGAATGAACTCCGTATGC
12864569 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 69, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
157 7 0.03
158 144 0.54
159 107 0.40
160 9 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (156 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
GTCGCTAGAGAGGCAGAATGCGCAAGCCAGGGATCGACTCGGTCCCCCTTTGTGCTATCGATCCT
GCTGTCGCAACCCTCGGTCCGGTCTG
Found at i:12864571 original size:26 final size:26
Alignment explanation
Indices: 12864542--12864594 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12864532 CCGGTCTGAT
12864542 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12864568 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12864594 C
1 C
12864595 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12864855 original size:343 final size:343
Alignment explanation
Indices: 12864225--12864988 Score: 1009
Period size: 343 Copynumber: 2.2 Consensus size: 343
12864215 TCGGTCCAAT
* * * * * * * *
12864225 CTTAGACTGGGAATGAACTCCGTATGCATAAGTTAACCCACAAAATGAGCGTACGAGCGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTGAGC
* *
12864290 CGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCTCTGCGTGCTACCGGTCC
66 CGGTCGAAGAGGCATAATGCACAAGCCAGGGATCGGCCCAGTCCCCCTCTGCATGCTACCGGTCC
*
12864355 CGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * **
12864420 CCCGTGAAACGGGCATGCGGGCGCTCAGTCGACTAGAGAGGCAGAATGCACAAGTCGGGGATCGA
196 CCCGTGAAACGGGCATGCGGGCGCTCAATCGACCAGAGAGGCAGAATGCACAAGTCGAAGATCGA
* * ** * *
12864485 CTCGGTTCACCCTTTGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCG-GTCTGATCTTAGAC
261 CTCCGATCACCCTGCGTGCTATCGATCCTGCTGTCGCAACCATCGATCCGATTC-GATCTTAGAC
*
12864549 TGGGAATGAACTCCGTATG
325 TGAGAATGAACTCCGTATG
* *
12864568 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAGCAAGCGTGCGGGAGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTGAGC
* * **
12864633 CGG-CTGAAGAGGCATAATGCACACGCC-GCGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGGT
66 CGGTC-GAAGAGGCATAATGCACAAGCCAG-GGATCGGCCCAGTCCCCCTCTGCATGCTACCGGT
*
12864696 CCCGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCT
129 CCCGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * ** *
12864761 AACCCAG-GAAACTGGCGTGCGGGCGCTCAATCGGCCGGAGAGGCAGAATGTGCTAGTCGAAGAT
194 AACCC-GTGAAACGGGCATGCGGGCGCTCAATCGACCAGAGAGGCAGAATGCACAAGTCGAAGAT
* * * *
12864825 CG-GTCCGATC-CCCTCCGCGTGCTGTCGATCCTGCTGTCGTAACCATCGGTCCGATTCGATCTT
258 CGACTCCGATCACCCT--GCGTGCTATCGATCCTGCTGTCGCAACCATCGATCCGATTCGATCTT
*
12864888 AGACTGAGAATGAACTTCGTATG
321 AGACTGAGAATGAACTCCGTATG
** * * *
12864911 CTTAGACCAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTGAGC
*
12864976 CGGTCGGAGAGGC
66 CGGTCGAAGAGGC
12864989 CAACCGGAGA
Statistics
Matches: 365, Mismatches: 49, Indels: 14
0.85 0.11 0.03
Matches are distributed among these distances:
341 4 0.01
342 7 0.02
343 350 0.96
344 4 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (343 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTGAGC
CGGTCGAAGAGGCATAATGCACAAGCCAGGGATCGGCCCAGTCCCCCTCTGCATGCTACCGGTCC
CGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCGTGAAACGGGCATGCGGGCGCTCAATCGACCAGAGAGGCAGAATGCACAAGTCGAAGATCGA
CTCCGATCACCCTGCGTGCTATCGATCCTGCTGTCGCAACCATCGATCCGATTCGATCTTAGACT
GAGAATGAACTCCGTATG
Found at i:12865707 original size:159 final size:158
Alignment explanation
Indices: 12865297--12865708 Score: 422
Period size: 159 Copynumber: 2.6 Consensus size: 158
12865287 GTATGCTTAA
* * * *
12865297 ACATGGAATGAACTCCGTGTGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCTGGCT
1 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * *
12865362 GGAGAGGTAGAATGTGCAAGCCGGGGATCAACCCGGTCCCCCCTGCGTGCTGTCGATCCTGTTGC
66 AGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCCCTGCATGCTGTCGATCCCGCTGC
* * *
12865427 CGCAACCCTCAGTCCGGTCCAATTTTAG
131 CACAACCCTCAGTCCGCTCCAAGTTTAG
* * * * *
12865455 AC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGATCC-GA
1 ACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * ** **
12865518 CAGGAGAGGC-GTAATGCACAAGCCGAGGATCGGCCCGGTCCCTCTTTGCATGCTG-CAGATCCC
65 CA-GAGAGGCAG-AATGCGCAAGCCGGGGATCAACCCGGTCCC-CCCTGCATGCTGTC-GATCCC
* *** *
12865581 GCTGCCACAACCCTCGGTCCGACT-GGGGTTTGG
126 GCTGCCACAACCCTCAGTCCG-CTCCAAGTTTAG
* *
12865614 ACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-AGGCGTGTGGGCGCTCAGCCGGC
1 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCAGCCGGC
* *
12865678 CAGAGAGGCAGAATGCGTAAGTCGGGGATCA
65 CAGAGAGGCAGAATGCGCAAGCCGGGGATCA
12865709 GACGGGTGGT
Statistics
Matches: 203, Mismatches: 41, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.01
158 85 0.42
159 109 0.54
160 6 0.03
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.17
Consensus pattern (158 bp):
ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
AGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCCCTGCATGCTGTCGATCCCGCTGC
CACAACCCTCAGTCCGCTCCAAGTTTAG
Found at i:12866267 original size:26 final size:26
Alignment explanation
Indices: 12866238--12866289 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12866228 CCGATCTGAT
12866238 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
12866264 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
12866290 GCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:12867193 original size:158 final size:157
Alignment explanation
Indices: 12866755--12867199 Score: 378
Period size: 158 Copynumber: 2.8 Consensus size: 157
12866745 TCTGCTACTG
* * * *
12866755 ATCCTACTGCCA-ACCCTCGGTCTGACTGGGGCTTAGACATGGAGTGAACTCCCTATGCCTAAGC
1 ATCCCACTGCCACAACCTCGGTCCGACT-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * * *
12866819 CAACCCATGAAACGAGCATGCGGGCGTTCAGCCGATCAGAGAGGTAAAATGTGTAAGCCGAGGA-
65 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAAAATGCGTAAGCCGGGGAT
* * * *
12866883 CCGACCCGATCCCCCTTACGTGCTATCA
130 CAGACCCGAACCCCATTACGTGCTACCA
** ** * ** *
12866911 ATCTTACTGCTGCAACCCTCGGTCCGGTCTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAA
1 ATCCCACTGCCACAA-CCTCGGTCC-GACTGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAA
* * * * ** * * * * **
12866975 GTCAACCCACGAAATGAGCGTACGACCACTGAGCC-AGCCGGAGAGGCATAATGCACAAGCCGGG
63 GCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGA-CCGGAGAGGTAAAATGCGTAAGCCGGG
* * * *
12867039 GATCAG-CCCGAACGCCATCTGCGTGCTGCCG
127 GATCAGACCCGAACCCCAT-TACGTGCTACCA
* * *
12867070 GTCCCGCTGCCACAACCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
1 ATCCCACTGCCACAACCTCGGTCCGACT-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * *
12867135 CAACCTATGAAACGGGCGTGCGGGCGCTCAACCGACCGGAGAGGTAGAATGCGTAAGCCAGGGAT
65 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAAAATGCGTAAGCCGGGGAT
12867200 TGGCCCAGTC
Statistics
Matches: 216, Mismatches: 63, Indels: 18
0.73 0.21 0.06
Matches are distributed among these distances:
156 9 0.04
157 6 0.03
158 177 0.82
159 24 0.11
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (157 bp):
ATCCCACTGCCACAACCTCGGTCCGACTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
AACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAAAATGCGTAAGCCGGGGATC
AGACCCGAACCCCATTACGTGCTACCA
Found at i:12867288 original size:26 final size:26
Alignment explanation
Indices: 12867259--12867311 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12867249 CCGGTCCGAT
12867259 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12867285 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12867311 C
1 C
12867312 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12867999 original size:553 final size:553
Alignment explanation
Indices: 12866953--12868052 Score: 1501
Period size: 553 Copynumber: 2.0 Consensus size: 553
12866943 TCTTAGACTG
* * * * *
12866953 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGACCACTGAGCCAGCCGGAG
1 GGAATGAACACAGTATGCCTAAGTCAACCCACGAAACGAGCGTACGACCACTGAGCCAGCCGAAA
* * *
12867018 AGGCATAATGCACAAGCCGGGGATCAGCCCGAACGCCATCTGCGTGCTGCCGGTCCCGCTGCCAC
66 AGGCATAATGCACAAGCCGGGGATCAGCCCGAACACCATCTGCGTCCTGCCAGTCCCGCTGCCAC
* * *
12867083 AACCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATGAAAC
131 AACCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAAC
* * * * ** *
12867148 GGGCGTGCGGGCGCTCAACCGACCGGAGAGGTAGAATGCGTAAGCCAGGGATTGGCCCAGTCCCC
196 CGGAGTGCGGGCGCTCAACCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCGGCCCAGTCCCC
** * * * * * *
12867213 CTGCGTGCTGTTGATCCTATTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
261 CTGCGTGCTGCCGATCCTACTACCACAACCCTCGATCCGATCCAATCTTAGACTGGAAATGAACT
* *
12867278 CCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCACGAAATGAGCGTGTAAATG
326 CCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCACGAAACGAGCGTGTAAATG
* *
12867343 CTCAGCCGACCAGAGAGGCAGGATGTGCAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGC
391 CTCAGCCGACCAAAGAGGCAGGATGCGCAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGC
*
12867408 ACATCTTCATATTTCTGTCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCC
456 ACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCC
12867473 TATGCCTTCATGTGAAGTTTCGTGGCAGGACAT
521 TATGCCTTCATGTGAAGTTTCGTGGCAGGACAT
* * * * *
12867506 GGAATGAACACAGTATGCCTAAGTTAACCCACGGAACGAGCGTGCGAGCGCTGAGCCAGCCGAAA
1 GGAATGAACACAGTATGCCTAAGTCAACCCACGAAACGAGCGTACGACCACTGAGCCAGCCGAAA
* * *
12867571 AGGCATAATGCGCAAGCCGGGGATC-GACTCGATCACCATCTGCGTCCTGCCAGTCCCGCTGCCA
66 AGGCATAATGCACAAGCCGGGGATCAG-CCCGAACACCATCTGCGTCCTGCCAGTCCCGCTGCCA
* * *
12867635 CAACCCTC-GATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGA
130 CAA-CCTCAG-TCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGA
* * ** * * *
12867699 AACCGGAGTGCGGGCGCTCAGCTGGTCGAAGAGGCAGAATGCACAAGTC-GAGGATCGGTCCGGT
193 AACCGGAGTGCGGGCGCTCAACCGACCGAAGAGGCAGAATGCACAAGCCAG-GGATCGGCCCAGT
* * * ** * *
12867763 CCCTCCTGTGTGTTGCCGATCCTGCTACCGTAA-CCTCGATCTGATTCAATCTTAGACTGGAAAT
257 CCC-CCTGCGTGCTGCCGATCCTACTACCACAACCCTCGATCCGATCCAATCTTAGACTGGAAAT
* * *
12867827 GACCTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCATGAAACGAGC-TGT
321 GAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCACGAAACGAGCGTGT
** * **
12867891 GGATGCTCAGCCGACCAAAGATGCAGGATGCGCAAGTTGGGGATCGAATC-GGTGGTAGGTGGGT
386 AAATGCTCAGCCGACCAAAGAGGCAGGATGCGCAAGCCGGGGATCGAA-CGGGTGGTAGGTGGGT
* * *
12867955 TCAAGCACATCTTCATATTTCTGCCTTGCTAATGCCATTTTTATGGCTTTTAAATTCATACAATG
450 TCAAGCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
12868020 GTCCCCTATGCCTTCATGTGAAGTTTCGTGGCA
515 GTCCCCTATGCCTTCATGTGAAGTTTCGTGGCA
12868053 AGACGACTCG
Statistics
Matches: 474, Mismatches: 67, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
552 1 0.00
553 268 0.57
554 185 0.39
555 20 0.04
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.22
Consensus pattern (553 bp):
GGAATGAACACAGTATGCCTAAGTCAACCCACGAAACGAGCGTACGACCACTGAGCCAGCCGAAA
AGGCATAATGCACAAGCCGGGGATCAGCCCGAACACCATCTGCGTCCTGCCAGTCCCGCTGCCAC
AACCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAAC
CGGAGTGCGGGCGCTCAACCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCGGCCCAGTCCCC
CTGCGTGCTGCCGATCCTACTACCACAACCCTCGATCCGATCCAATCTTAGACTGGAAATGAACT
CCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCACGAAACGAGCGTGTAAATG
CTCAGCCGACCAAAGAGGCAGGATGCGCAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGC
ACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCC
TATGCCTTCATGTGAAGTTTCGTGGCAGGACAT
Found at i:12868571 original size:26 final size:26
Alignment explanation
Indices: 12868533--12868585 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12868523 GGCTCAAACT
12868533 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12868559 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12868585 C
1 C
12868586 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12868752 original size:26 final size:26
Alignment explanation
Indices: 12868723--12868773 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12868713 GATCAGATCA
*
12868723 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
12868749 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
12868774 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:12869126 original size:26 final size:26
Alignment explanation
Indices: 12869088--12869140 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12869078 CCGGTCCAAT
*
12869088 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12869114 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12869140 C
1 C
12869141 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12869487 original size:159 final size:158
Alignment explanation
Indices: 12869113--12869564 Score: 514
Period size: 159 Copynumber: 2.8 Consensus size: 158
12869103 AACTCTGTAT
* *
12869113 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
12869178 TCGGTCGGAGAGGCAGAATGTGCAAGTCGGGGACCGACCCGATCCCCTTTGTGTGCTATCGATCC
66 CCGGCCGGAGAGGCAGAATGTGCAAGTCAGGGATCGGCCCGATCCCCCTTGCGTGCTATCGATCC
* * *
12869243 TTCTACCACAACCCTTAGTTCAGTCTGA
131 TGCTACCACAACCCTTAGGTCAGACTGA
* * * * * * *
12869271 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCCACAAAATGAGCGTGCGGGTGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA-CCCACGAAACGAGCGTGCGGGCGCTC
* * * * *
12869335 AGCCTGCCAGAGAGGCACAATGTGCAAGTCAGGGATTGGCCCGATCCCCCTCTGCGTGCTATCGG
64 AGCCGGCCGGAGAGGCAGAATGTGCAAGTCAGGGATCGGCCCGATCCCCCT-TGCGTGCTATCGA
* * *
12869400 TCCTGCTACCACAACCC-TCGGTCTGACTGGG
128 TCCTGCTACCACAACCCTTAGGTCAGACT-GA
* * * *
12869431 GCTTAGACATGGAATGAACTCCCTATGCCTAACCCAAGCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
12869496 CCGGCCGGAGAGGTAGAATGCGTAAGCCAGGGATCAGCCTCG-TCCCCCTTGCGTGCTATCGATC
66 CCGGCCGGAGAGGCAGAATGTGCAAGTCAGGGATCGGCC-CGATCCCCCTTGCGTGCTATCGATC
12869560 CTGCT
130 CTGCT
12869565 GTCGTAACCT
Statistics
Matches: 240, Mismatches: 48, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
157 1 0.00
158 51 0.21
159 127 0.53
160 60 0.25
161 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGTGCAAGTCAGGGATCGGCCCGATCCCCCTTGCGTGCTATCGATCC
TGCTACCACAACCCTTAGGTCAGACTGA
Found at i:12869594 original size:158 final size:159
Alignment explanation
Indices: 12869114--12869616 Score: 511
Period size: 159 Copynumber: 3.2 Consensus size: 159
12869104 ACTCTGTATG
* *
12869114 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
12869178 TCGGTCGGAGAGGCAGAATGTGCAAGTCGGGGA-CCGACCCGATCCCCTTTGTGTGCTATCGATC
65 CCGGCCGGAGAGGCAGAATGTGCAAGTCAGGGATCAG-CCCGATCCCCCTTGCGTGCTATCGATC
* * *
12869242 CTTCTACCACAACCCTTA-GTTC-AGTCTGAT
129 CTGCTACCACAACCC-TACGGTCTAGTCCGAT
* * * * * *
12869272 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCCACAAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** *
12869337 CCTGCCAGAGAGGCACAATGTGCAAGTCAGGGATTGGCCCGATCCCCCTCTGCGTGCTATCGGTC
65 CCGGCCGGAGAGGCAGAATGTGCAAGTCAGGGATCAGCCCGATCCCCCT-TGCGTGCTATCGATC
* * **
12869402 CTGCTACCACAACCCT-CGGTCT-GACTGGGG
129 CTGCTACCACAACCCTACGGTCTAGTC-CGAT
* * * *
12869432 CTTAGACAT-GGAATGAACTCCCTATGCCTAACCCAAGCCACGAAACGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
12869496 CCGGCCGGAGAGGTAGAATGCGTAAGCCAGGGATCAGCCTCG-TCCCCCTTGCGTGCTATCGATC
65 CCGGCCGGAGAGGCAGAATGTGCAAGTCAGGGATCAGCC-CGATCCCCCTTGCGTGCTATCGATC
** ** *
12869560 CTGCTGTCGTAA-CCTACGGTCTAGTCCAAT
129 CTGCTACCACAACCCTACGGTCTAGTCCGAT
12869590 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
12869617 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 55, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
157 5 0.02
158 84 0.30
159 127 0.46
160 61 0.22
161 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGTGCAAGTCAGGGATCAGCCCGATCCCCCTTGCGTGCTATCGATCCT
GCTACCACAACCCTACGGTCTAGTCCGAT
Found at i:12869636 original size:25 final size:26
Alignment explanation
Indices: 12869590--12869641 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
12869580 CTAGTCCAAT
12869590 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12869616 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12869641 C
1 C
12869642 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12870344 original size:26 final size:26
Alignment explanation
Indices: 12870308--12870360 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12870298 GGCTCAAACT
12870308 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
12870334 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12870360 C
1 C
12870361 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12870870 original size:26 final size:26
Alignment explanation
Indices: 12870834--12870886 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12870824 CTAGTTCGAT
12870834 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
12870860 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
12870886 C
1 C
12870887 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:12871372 original size:552 final size:551
Alignment explanation
Indices: 12870517--12871659 Score: 1440
Period size: 552 Copynumber: 2.1 Consensus size: 551
12870507 CTGGTCTGAT
*
12870517 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAA
** * * * ** * * *
12870581 CTGGCTGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCTCTCTACGTTTTGTCGGTC
65 CCAGCCGAAGAGGCAGAATGCACAAGTCAAGGATCGACCCGATCCCTCTCTACATTCTGTCGGTC
* *
12870646 TCGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCACTATGCCTAAGCCA
130 CCGCTACCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCACTATGCCTAAGCCA
* * * * * * *
12870711 ACCCACAAAACGGGCATACTGGTGCTCAACCGGCCGGAGAGGTAGAATGATCAAGCTGGGGATCG
195 ACCCACAAAACAGGCATACGGGTGCTCAACCAGCCGAAGAGGCAGAATGAGCAAGCAGGGGATCG
* * * * * *
12870776 GCTCGGTCCCCCCTGCGTGCTACCGACCCTGCTGCCATAACCCTCGGTCTAGTTCGATCTTACAC
260 GCCCGGTCCCCCATGCGTGCTACCGACCCTACTACCACAACCCTCAGTCTAGTTCGATCTTACAC
* * *
12870841 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
325 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT-CGTATGCCCAAGTCAACCCACAAAAC
* ** * *
12870906 GAGCATACAGG-TGCTCTTCC-AGCCGGACAGGCC-GGTCGGAGAGGCAGAATGCAAAAGTTAAG
389 AAGCAT-CAGGATGCTCAGCCGA-CCGGACAGGCCAGCT-GGAGAGACAGAATGCAAAAGTTAAG
* * *
12870968 GATC-AGCCTGGTCCCCCCAGCATGCTACT-GATCCTGCTGCTGGTCCTACTGTCGCGACCCTCG
451 GATCGA-CCCGATCCCCCCAGCATG-TACTCGATCCTGCTGCTGGTCCTACTGTCGCAACCCTCG
* *
12871031 GTCCGTTCTGGTCTTAGATTGGGAATCAACTCCGTATG
514 GTCCGATCTGATCTTAGATTGGGAATCAACTCCGTATG
* * *
12871069 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAAC
12871134 CAGCCGAAGAGGCAGAATGCACAAG-CTAAGGATCGACCCGATCCCTCT-TCACATTCTGTCGGT
66 CAGCCGAAGAGGCAGAATGCACAAGTC-AAGGATCGACCCGATCCCTCTCT-ACATTCTGTCGGT
* * * * *
12871197 CCCGCTGCCACAACCCTC-TTTTCGACTGGGGCTTAGATATGGAATGAACTCCCTATGCCTAAGC
129 CCCGCTACCACAACCCTCGGTCT-GACTGGGGCTTAGACATGGAATGAACTCACTATGCCTAAGC
* ** *
12871261 CAACCCACGAAACAGGCATACGGGTGCTCAGTCAGCCGAAGAGGCAGAATGCGCAAGCAGGGGAT
193 CAACCCACAAAACAGGCATACGGGTGCTCAACCAGCCGAAGAGGCAGAATGAGCAAGCAGGGGAT
** * * * *
12871326 CGGCCCGGTCCCCCATGCGTGCTGTCGATCCTACTACCGCAACCCTCAGTCTGGTTCGATCTTAG
258 CGGCCCGGTCCCCCATGCGTGCTACCGACCCTACTACCACAACCCTCAGTCTAGTTCGATCTTAC
* *
12871391 ACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCGTATGCCCAAGTCAACCCATAAAA
323 ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCGTATGCCCAAGTCAACCCACAAAA
* ** * * **
12871456 CAAGCGTGTGGATGCTCAGCCGACTGGAGAGGCCAGCTGGAGAGACAGAATGCAAAAGTTGGGGA
388 CAAGCATCAGGATGCTCAGCCGACCGGACAGGCCAGCTGGAGAGACAGAATGCAAAAGTTAAGGA
* * ** * ** * *
12871521 TCGACCCGATCCCCCCTGCGTGTTGTCGATCTTGCTGCTGGTCCTGTTGTTGCAACCCTCGGTTC
453 TCGACCCGATCCCCCCAGCATGTACTCGATCCTGCTGCTGGTCCTACTGTCGCAACCCTCGGTCC
* *
12871586 GATCTGATCTTAGATTGGGAATGAACTCTGTATG
518 GATCTGATCTTAGATTGGGAATCAACTCCGTATG
12871620 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
12871660 AGAGCATTTG
Statistics
Matches: 504, Mismatches: 78, Indels: 19
0.84 0.13 0.03
Matches are distributed among these distances:
550 4 0.01
551 187 0.37
552 312 0.62
553 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (551 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAAC
CAGCCGAAGAGGCAGAATGCACAAGTCAAGGATCGACCCGATCCCTCTCTACATTCTGTCGGTCC
CGCTACCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCACTATGCCTAAGCCAA
CCCACAAAACAGGCATACGGGTGCTCAACCAGCCGAAGAGGCAGAATGAGCAAGCAGGGGATCGG
CCCGGTCCCCCATGCGTGCTACCGACCCTACTACCACAACCCTCAGTCTAGTTCGATCTTACACT
GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCGTATGCCCAAGTCAACCCACAAAACAA
GCATCAGGATGCTCAGCCGACCGGACAGGCCAGCTGGAGAGACAGAATGCAAAAGTTAAGGATCG
ACCCGATCCCCCCAGCATGTACTCGATCCTGCTGCTGGTCCTACTGTCGCAACCCTCGGTCCGAT
CTGATCTTAGATTGGGAATCAACTCCGTATG
Found at i:12871415 original size:26 final size:25
Alignment explanation
Indices: 12871386--12871437 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
12871376 CTGGTTCGAT
12871386 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAAC-TCGTATG
*
12871412 CTTAGACTGGGGATGAACTCGTATG
1 CTTAGACTGGGAATGAACTCGTATG
12871437 C
1 C
12871438 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:12872133 original size:26 final size:26
Alignment explanation
Indices: 12872097--12872149 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12872087 GTTGGCTTAG
12872097 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
12872123 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
12872149 G
1 G
12872150 ATCAAATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:12872322 original size:26 final size:26
Alignment explanation
Indices: 12872293--12872345 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12872283 GTTGACTTAG
12872293 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
12872319 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12872345 G
1 G
12872346 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12872611 original size:159 final size:158
Alignment explanation
Indices: 12872319--12872664 Score: 451
Period size: 159 Copynumber: 2.2 Consensus size: 158
12872309 CCTAGTCTAA
* * * * *
12872319 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGACTGAGGGTTGGGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAG-CCCAACCGGACCGAGGGATGGGGCAACAGGATCGAC
* * * * * * * *
12872383 AGCACGCAGAGGGAGACCGGGCCGATCCTCGGCTTGGGCATTCTACCTCTCCGGCCGGTTGAGCG
64 AGCACGAAAAGGGAGACCGGGCCAATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTGAGCA
12872448 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * * **
12872478 GCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCGGACCGAGGGATGTGGCAACGGGATCGGTA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCAA-CCGGACCGAGGGATGGGGCAACAGGATCGACA
* * *
12872543 GCACGAAAAGGGGGACTGGGCCAATCCCCGGCTTGCGCATTCTACCTTTCCAGCCGGCTGAGCAC
65 GCACGAAAAGGGAGACCGGGCCAATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTGAGCAC
*
12872608 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
*
12872637 GCATACGAAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
12872665 ATACGGAGTT
Statistics
Matches: 161, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
158 6 0.04
159 155 0.96
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCAACCGGACCGAGGGATGGGGCAACAGGATCGACAG
CACGAAAAGGGAGACCGGGCCAATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTGAGCACC
CGCACGCCCGTTTCGTGGGTTGGCTTAG
Found at i:12872687 original size:26 final size:26
Alignment explanation
Indices: 12872637--12872689 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12872627 GTTGGCTTAG
*
12872637 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
12872663 GCATACGGAGTTCATTCC-TAATCTAA
1 GCATACGAAGTTCATTCCAT-ATCTAA
12872689 G
1 G
12872690 AGTTTGTGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:12874417 original size:159 final size:157
Alignment explanation
Indices: 12874030--12874548 Score: 413
Period size: 158 Copynumber: 3.3 Consensus size: 157
12874020 GAGCACTCGC
* * * * * * *
12874030 ACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCTTTCCCAGTCCACGATCGGACCGGACT
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACC
* * * *
12874095 AAGGGTTATGATAGCAGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCCCGACTTGCACATT
66 GAGGGTTGTGACAGCAGGACCGACAGCACGCAGGGGGGACCAGG-CGATCCCCGACTTGCACATT
* * * * *
12874160 CTACCTATCCGATTGGCTGAGCGCCTGC
130 ATACCTATCCGATCGGCTCAACGCCTGA
* * * * * * * *
12874188 ACGCCCGTTTCATGGGTCGGCTTAGGCATAGGGAGTTCATTCCAATGTCTAA-ACCCCAG-TCAG
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGA--TCAGATCGG
* ** * *
12874251 ACCGAGGGTTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGACC-GAGCGGATCCTCGGCTTGC
63 ACCGAGGGTTGTGACAGCAGGACCGACAGCACGCAG-GGGGGACCAG-GC-GATCCCCGACTTGC
* * * *
12874315 GCATTATGCCTCTCCGATCGGCTCAATGCCTGA
125 ACATTATACCTATCCGATCGGCTCAACGCCTGA
12874348 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACC
* * * * * * * * * * *
12874413 GAGGGTTGTGCCAGCAAGATCAACAGTACGCAGGGCGAATCGAGTC-AGTCCTCGATTTATGCA-
66 GAGGGTTGTGACAGCAGGACCGACAGCACGCAGGGGGGA-CCAGGCGA-TCCCCGA-CT-TGCAC
* * * * * *
12874476 A-TATTCCTCTCCGATCGGTTGAGCGTCC-GT
127 ATTATACCTATCCGATCGGCTCAACG-CCTGA
* *
12874506 ACTCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
12874549 ATGTGTAAGC
Statistics
Matches: 284, Mismatches: 63, Indels: 28
0.76 0.17 0.07
Matches are distributed among these distances:
157 1 0.00
158 112 0.39
159 80 0.28
160 91 0.32
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACC
GAGGGTTGTGACAGCAGGACCGACAGCACGCAGGGGGGACCAGGCGATCCCCGACTTGCACATTA
TACCTATCCGATCGGCTCAACGCCTGA
Found at i:12874583 original size:26 final size:26
Alignment explanation
Indices: 12874531--12874583 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12874521 GTTGGCTTAG
*
12874531 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGGAGTTCATTCCATGTCTAA
12874557 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
12874583 G
1 G
12874584 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:12874766 original size:27 final size:27
Alignment explanation
Indices: 12874736--12874793 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
12874726 CATGGGTTGA
12874736 CTAAGGCATACGGAGTTCATCCCCAGT
1 CTAAGGCATACGGAGTTCATCCCCAGT
* * *
12874763 CTAA-GCATATGGAGTTCATTCCTAGT
1 CTAAGGCATACGGAGTTCATCCCCAGT
12874789 CTAAG
1 CTAAG
12874794 ATCAAACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (27 bp):
CTAAGGCATACGGAGTTCATCCCCAGT
Found at i:12875294 original size:26 final size:26
Alignment explanation
Indices: 12875242--12875294 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12875232 GTTACCTTAG
* *
12875242 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACAGAGTTCATTCCATGTCTAA
12875268 GCATACAGAGTTCATTTCCA-GTCTAA
1 GCATACAGAGTTCA-TTCCATGTCTAA
12875294 G
1 G
12875295 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:12875629 original size:26 final size:26
Alignment explanation
Indices: 12875600--12875649 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
12875590 AGATTAGGCG
* *
12875600 TACGGAGTTGATT-CCATGTCTAAGCA
1 TACGAAGTTCATTCCCA-GTCTAAGCA
12875626 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
12875650 AGTTTGAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:12876291 original size:26 final size:26
Alignment explanation
Indices: 12876262--12876314 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
12876252 GTTGACTTAG
12876262 GCATAC-AGAGTTCA-TCCCTAGTCTAA
1 GCATACGA-AGTTCATTCCC-AGTCTAA
12876288 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12876314 G
1 G
12876315 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12876791 original size:26 final size:26
Alignment explanation
Indices: 12876761--12876813 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12876751 GTTGGCTTAG
12876761 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12876787 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12876813 G
1 G
12876814 ATTGGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12878354 original size:26 final size:26
Alignment explanation
Indices: 12878318--12878370 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12878308 GTTGGCTTAG
*
12878318 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12878344 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12878370 G
1 G
12878371 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12878549 original size:26 final size:26
Alignment explanation
Indices: 12878513--12878565 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12878503 GTTGATTTAG
*
12878513 GCATACGAAGTTCATACCCAGTCTAA
1 GCATACAAAGTTCATACCCAGTCTAA
*
12878539 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATACCCAGTCTAA
12878565 G
1 G
12878566 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATACCCAGTCTAA
Found at i:12879608 original size:26 final size:26
Alignment explanation
Indices: 12879578--12879630 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12879568 GTTGACTTAG
12879578 GCATACGAAGTTCATCCCCAGCCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
* * *
12879604 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
12879630 G
1 G
12879631 ATGGGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGCCTAA
Found at i:12880682 original size:26 final size:26
Alignment explanation
Indices: 12880643--12880694 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
12880633 TGACTTAGGC
12880643 ATACAGAGTCCATTCCCAGTCTAAGA
1 ATACAGAGTCCATTCCCAGTCTAAGA
*
12880669 ATACAGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTCCATTCCCAGTCTAAGA
12880695 TCGAATTGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (26 bp):
ATACAGAGTCCATTCCCAGTCTAAGA
Found at i:12881518 original size:26 final size:26
Alignment explanation
Indices: 12881488--12881541 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
12881478 TGGTTTGACT
*
12881488 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAATC
*
12881514 TAGGCATACGGAGTTCATTCCCAATC
1 TAGGCATACGGAGTTCATCCCCAATC
12881540 TA
1 TA
12881542 AGATTGAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAATC
Found at i:12881819 original size:159 final size:157
Alignment explanation
Indices: 12881514--12882984 Score: 1028
Period size: 159 Copynumber: 9.2 Consensus size: 157
12881504 ATCCCCAGTC
* **** * *
12881514 TAGGCATACGGAGTTCATTCCCAATCTAAGATTGAATCTG-ACCGAGGGTTGTGGCAGCAGGATC
1 TAGGCATACGGAGTTCATT-CCAGTCTAAGCCCCAA-CCGAACCGAGGGTTGTGGCAGCAGGACC
* * * * ** **
12881578 GGCAGCACGCAG-GGGGGACTGTGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGATTGA
64 GACAGCACGCAGAGGGGGAC-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGA
* *
12881642 GTGCCCGCACG-TCCGTTTCATCGGTTGGCT
128 GCGCCCGCACGCT-CGTTTCATGGGTTGGCT
* * *
12881672 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAATCGAGGGTTGTGGCAGCGGGACCG
1 TAGGCATACGGAGTTCATTCCA-GTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCAGGACCG
** * * * * * * * * *
12881737 GTAGCATGCTGAGGGGGATCAGGCCAATCCCTGGCTTGCGCATTATACCTCTCCAGCCGGCTCAG
65 ACAGCACGCAGAGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
* * *
12881802 CACCCGCACGCTCGTTTCGTGGGTTGACT
129 CGCCCGCACGCTCGTTTCATGGGTTGGCT
* ** * * * * * *
12881831 TAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGTGGTAGCAGGATCA
1 TAGGCATACGGAGTTCATT-CCAGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCAGGACCG
* * * * * *
12881896 ACAGTACGCA-AGGGGGGACTGGGCC-AGTCCCCGACTTACGCATTCTGCCTCTTCGGTCGACTG
65 ACAGCACGCAGA-GGGGGAC-GGGCCGA-TCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTG
* * * *
12881959 AGTGCCCGCACGCCCATTTCGTGGGTTGGCT
127 AGCGCCCGCACGCTCGTTTCATGGGTTGGCT
* * * * * * * *
12881990 TAGGCATA-GGCAGTTCATTCCATGTCTAAACCCCAGCAGGATCGAGGGTTGTGGCAACGGGATC
1 TAGGCATACGG-AGTTCATTCCA-GTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCAGGACC
* * * * *** * *
12882054 GGCAGCGCGTAGAGAGGGGGCTGGGGTAATCCCCGGCTTGCGTATTCTGCCTCTCCGGCCGGTTG
64 GACAGCACGCAGAG-GGGGAC-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTG
** * *
12882119 A-CTGCCCATACGCTCGTTTCGTAGGTTGGCT
127 AGC-GCCCGCACGCTCGTTTCATGGGTTGGCT
* * * * *
12882150 TAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAA-CGAAGGTTGCGGCAGCAAGACC
1 TAGGCATACGGAGTTCATTCCA-GTCTAAGCCCCA-ACCGAACCGAGGGTTGTGGCAGCAGGACC
* * * *
12882214 AGCAGCAGGAATGGCAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGTATTCTTCCTCTC
64 -G-A-CA-GCA---C-GCA-G-A-GGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTC
* * * * *
12882279 CAGCCGACTGAGCACCCACACACTCGTTTCATGGGTTGGCT
117 CGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCT
* *
12882320 TAGGCATACAGAGTTCATTCCACGTCTAAGCCCCAGCC-AGACCGAGGGTTGTGGCAGC-GG-CA
1 TAGGCATACGGAGTTCATTCCA-GTCTAAGCCCCAACCGA-ACCGAGGGTTGTGGCAGCAGGAC-
* * ** * * * * *
12882382 TGACATCACGCAGAGGGGGATCGGGTTGATCCCCAGCTTGCGTATTATGCCTCTCCGGCCAGCTC
63 CGACAGCACGCAGAGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTG
* * * *
12882447 AGTGCCCGAACGCTCGTTTCGTGGGTTGACT
127 AGCGCCCGCACGCTCGTTTCATGGGTTGGCT
* * ** * * * *
12882478 TAGGCATACGAAGTTCATTTCCAGTATAAG-ATCAGATCGGACCGAGGGTTGCGACAGCAGGATC
1 TAGGCATACGGAGTTCA-TTCCAGTCTAAGCCCCA-ACCGAACCGAGGGTTGTGGCAGCAGGA-C
* * * * * * * * * *
12882542 C-ATAGCACCCAAGGGGGGGACCGGACCGGTCCTCGACTTACGCATTCTACCTCTCCGGTCGGCT
63 CGACAGCACGC-AGAGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCT
* *
12882606 GAGCACCCGCACGCTCGTTTCATGGGTTGACT
126 GAGCGCCCGCACGCTCGTTTCATGGGTTGGCT
* ** ** ** * **
12882638 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCAGTAGCAGGATTG
1 TAGGCATACGGAGTTCATT-CCAGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCAGGACCG
* * * * * **
12882703 ACAGCACGTAG-GGGGGACTGGGTCGGTCCCCAGCTTTCGCATTCTGCCTCTCCAACCGGCTGAG
65 ACAGCACGCAGAGGGGGAC-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
* *
12882767 CGCCCGCATGCCCGTTTCATGGGTTGGCT
129 CGCCCGCACGCTCGTTTCATGGGTTGGCT
* * * * * **
12882796 TAGGAAT-CGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGTAGTGGGACC
1 TAGGCATAC-GGAGTTCATTCCA-GTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCAGGACC
* * * * * *
12882860 GATAGCACGCAGAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTTA
64 GACAGCACGCAGAGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGA
* *
12882925 GCGCCCGAACGCTCGTTTCATGGGTTGACT
128 GCGCCCGCACGCTCGTTTCATGGGTTGGCT
12882955 TAGGCATACGGAGTTCATTCCCAGTCTAAG
1 TAGGCATACGGAGTTCATT-CCAGTCTAAG
12882985 ATCAGACCAG
Statistics
Matches: 1020, Mismatches: 243, Indels: 99
0.75 0.18 0.07
Matches are distributed among these distances:
157 12 0.01
158 286 0.28
159 339 0.33
160 240 0.24
161 11 0.01
162 1 0.00
163 2 0.00
164 1 0.00
165 1 0.00
166 2 0.00
167 2 0.00
168 5 0.00
169 4 0.00
170 111 0.11
171 3 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
TAGGCATACGGAGTTCATTCCAGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCAGGACCGA
CAGCACGCAGAGGGGGACGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
CCCGCACGCTCGTTTCATGGGTTGGCT
Found at i:12882521 original size:158 final size:159
Alignment explanation
Indices: 12882215--12882992 Score: 693
Period size: 158 Copynumber: 4.9 Consensus size: 159
12882205 AGCAAGACCA
* * * * * * * * *
12882215 GCAGCAGGAATGGCAGCACGCAG-GGGGGACCAGGCCGATCCCCGGCTTGCGTATTCTTCCTCTC
1 GCAGCAGGACTGACAGCACGCAGAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTC
* * * * *
12882279 CAGCCGACTGAGCACCC-ACACACTCGTTTCATGGGTTGGCTTAGGCATAC-AGAGTTCA-TTCC
66 CGGCCGGCTGAGCGCCCGA-ACGCTCGTTTCATGGGTTGACTTAGGCATACGA-AGTTCATTTCC
** * *
12882341 ACGTCTAAGCCCCAG-CCAGACCGAGGGTTGTG
129 A-GTCTAAG-ATCAGACCGGACCGAGGGTTGCG
* * *
12882373 GCAGC-GG-CATGACATCACGCAGAGGGGGATCGGGTTGATCCCCAGCTTGCGTATTATGCCTCT
1 GCAGCAGGAC-TGACAGCACGCAGAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTATGCCTCT
* * * *
12882436 CCGGCCAGCTCAGTGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTTCCA
65 CCGGCCGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTTCCA
* *
12882501 GTATAAGATCAGATCGGACCGAGGGTTGCG
130 GTCTAAGATCAGACCGGACCGAGGGTTGCG
* * * * * * ** * * * * *
12882531 ACAGCAGGA-TCCATAGCACCCAAGGGGGGGACCGGACCGGTCCTC-GACTTACGCATTCTACCT
1 GCAGCAGGACT-GACAGCACGC-AGAGGGGGATCGGGTCGATCCCCAG-CTTGCGCATTATGCCT
* * * *
12882594 CTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCC
63 CTCCGGCCGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTTC
* * *
12882659 CAGTCTAAGATCGGACCGAACCGAGGGTTGCA
128 CAGTCTAAGATCAGACCGGACCGAGGGTTGCG
* * * * * *
12882691 GTAGCAGGATTGACAGCACGTAG-GGGGGA-CTGGGTCGGTCCCCAGCTTTCGCATTCTGCCTCT
1 GCAGCAGGACTGACAGCACGCAGAGGGGGATC-GGGTCGATCCCCAGCTTGCGCATTATGCCTCT
** * * * * * *
12882754 CCAACCGGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGAAT-CGGGAGTTCA-TTCC
65 CCGGCCGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATAC-GAAGTTCATTTCC
** *
12882817 ATGTCTAAGCCCTAG-CCGGACCGAGGGTTGTG
129 A-GTCTAAGATC-AGACCGGACCGAGGGTTGCG
* ** * *
12882849 GTAGTGGGACCGATAGCACGCAGAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTC
1 GCAGCAGGACTGACAGCACGCAGAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTC
* * * *
12882914 CGGTCGGCTTAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
66 CGGCCGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTTCCAG
12882979 TCTAAGATCAGACC
131 TCTAAGATCAGACC
12882993 AGACTAAGGG
Statistics
Matches: 496, Mismatches: 102, Indels: 43
0.77 0.16 0.07
Matches are distributed among these distances:
157 22 0.04
158 229 0.46
159 113 0.23
160 131 0.26
161 1 0.00
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
GCAGCAGGACTGACAGCACGCAGAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTC
CGGCCGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTTCCAG
TCTAAGATCAGACCGGACCGAGGGTTGCG
Found at i:12882655 original size:318 final size:319
Alignment explanation
Indices: 12881514--12882984 Score: 1175
Period size: 318 Copynumber: 4.6 Consensus size: 319
12881504 ATCCCCAGTC
* * * *
12881514 TAGGCATACGGAGTTCATTCCCAATCTAAGAT-TGAATCTGACCGAGGGTTGTGGCAGCAGGATC
1 TAGGCATACGGAGTTCATTTCCAGTCTAAGATCAG-ATCGGACCGAGGGTTGTGGCAGCAGGATC
** * * * *
12881578 GGCAGCACGC-A-GGGGGGACTGTGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGATTG
65 CACAGCACGCAAGGGGGGGACCG-GCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTG
* * * * *
12881641 AGTGCCCGCACG-TCCGTTTCATCGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
129 AGCGCCCGCACGCT-CGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCACGTCTAAGCCC
* * * ** * * * * *
12881705 CAACCGAATCGAGGGTTGTGGCAGCGGGACCGGTAGCATGCTGAGGGGGATC-AGGCCAATCCCT
193 CAGCCGAACCGAGGGTTGTGGCAGCGGGACTGACAGCACGCAGAGGGGGATCTGGGTCAATCCCC
* * * *
12881769 GGCTTGCGCATTATACCTCTCCAGCCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACT
258 AGCTTGCGCATTATGCCTCTCCAGCCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACT
* * * * * * *
12881831 TAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGTGGTAGCAGGATCA
1 TAGGCATACGGAGTTCATTTCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCC
* * * *
12881896 ACAGTACGCAA-GGGGGGACTGGGCC-AGTCCCCGACTTACGCATTCTGCCTCTTCGGTCGACTG
66 ACAGCACGCAAGGGGGGGAC-CGGCCGA-TCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTG
* * * * * * * *
12881959 AGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGCAGTTCATTCCATGTCTAAACCCC
129 AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCACGTCTAAGCCCC
* * * * * * * *
12882024 AGCAGGATCGAGGGTTGTGGCAACGGGA-TCGGCAGCGCGTAGAGAGGGG-GCTGGGGT-AATCC
194 AGCCGAACCGAGGGTTGTGGCAGCGGGACT-GACAGCACGCAGAG-GGGGATCT-GGGTCAATCC
* * * * * * * *
12882086 CCGGCTTGCGTATTCTGCCTCTCCGGCCGGTTGA-CTGCCC-ATACGCTCGTTTCGTAGGTTGGC
256 CCAGCTTGCGCATTATGCCTCTCCAGCCGGCTCAGC-GCCCGA-ACGCTCGTTTCGTGGGTTGAC
12882149 T
319 T
** * * * *
12882150 TAGGCATACGGAGTTCA-TTCCATGTCTAAGCCCCAG-TCGGAACGAAGGTTGCGGCAGCAAGA-
1 TAGGCATACGGAGTTCATTTCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGTGGCAGCAGGAT
* * * *
12882212 CCAGCAGCAGGAATGGCAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGTATTCTTCCTC
64 CCA-CAGC----A---C-GCAAG--GGGGGGACC-GGCCGATCCCCGACTTGCGCATTCTGCCTC
* * * * *
12882277 TCCAGCCGACTGAGCACCCACACACTCGTTTCATGGGTTGGCTTAGGCATAC-AGAGTTCATTCC
117 TCCGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGA-AGTTCATTCC
* *
12882341 ACGTCTAAGCCCCAGCC-AGACCGAGGGTTGTGGCAGCGGCA-TGACATCACGCAGAGGGGGATC
181 ACGTCTAAGCCCCAGCCGA-ACCGAGGGTTGTGGCAGCGGGACTGACAGCACGCAGAGGGGGATC
** * * * *
12882404 -GGGTTGATCCCCAGCTTGCGTATTATGCCTCTCCGGCCAGCTCAGTGCCCGAACGCTCGTTTCG
245 TGGGTCAATCCCCAGCTTGCGCATTATGCCTCTCCAGCCGGCTCAGCGCCCGAACGCTCGTTTCG
12882468 TGGGTTGACT
310 TGGGTTGACT
* * * *
12882478 TAGGCATACGAAGTTCATTTCCAGTATAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCC
1 TAGGCATACGGAGTTCATTTCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCC
* * * * * * *
12882543 ATAGCACCCAAGGGGGGGACCGGACCGGTCCTCGACTTACGCATTCTACCTCTCCGGTCGGCTGA
66 ACAGCACGCAAGGGGGGGACCGG-CCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGA
* * **
12882608 GCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCC-CAGTCTAAG-ATC
130 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCAC-GTCTAAGCCCC
* ** * * * * **
12882671 GGACCGAACCGAGGGTTGCAGTAGCAGGATTGACAGCACGTAG-GGGGGA-CTGGGTCGGTCCCC
194 AG-CCGAACCGAGGGTTGTGGCAGCGGGACTGACAGCACGCAGAGGGGGATCTGGGTCAATCCCC
* * * * * * * * *
12882734 AGCTTTCGCATTCTGCCTCTCCAACCGGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCT
258 AGCTTGCGCATTATGCCTCTCCAGCCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACT
* ** * * **
12882796 TAGGAAT-CGGGAGTTCA-TTCCATGTCTAAGCCCTAG-CCGGACCGAGGGTTGTGGTAGTGGGA
1 TAGGCATAC-GGAGTTCATTTCCA-GTCTAAGATC-AGATCGGACCGAGGGTTGTGGCAGCAGGA
* * * * *
12882858 -CCGATAGCACGC-AGAGGGGGATCGGGTCGATCCCC-AGCTTGCGCATTATGCCTCTCCGGTCG
63 TCC-ACAGCACGCAAGGGGGGGA-CCGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGGTCG
* * * * *
12882920 GCTTAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC-CAGTCTAA
125 ACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCAC-GTCTAA
12882984 G
189 G
12882985 ATCAGACCAG
Statistics
Matches: 933, Mismatches: 172, Indels: 98
0.78 0.14 0.08
Matches are distributed among these distances:
316 1 0.00
317 174 0.19
318 371 0.40
319 120 0.13
320 7 0.01
321 1 0.00
323 1 0.00
324 1 0.00
326 1 0.00
327 10 0.01
328 108 0.12
329 20 0.02
330 117 0.13
331 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (319 bp):
TAGGCATACGGAGTTCATTTCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCC
ACAGCACGCAAGGGGGGGACCGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAG
CGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCACGTCTAAGCCCCAG
CCGAACCGAGGGTTGTGGCAGCGGGACTGACAGCACGCAGAGGGGGATCTGGGTCAATCCCCAGC
TTGCGCATTATGCCTCTCCAGCCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACT
Found at i:12883165 original size:26 final size:26
Alignment explanation
Indices: 12883128--12883180 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12883118 GTTGAATTAG
*
12883128 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
12883154 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12883180 G
1 G
12883181 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12883507 original size:26 final size:26
Alignment explanation
Indices: 12883466--12883523 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
12883456 CATGGGTTGG
*
12883466 CTAAGGCATTCGGAGTTCATT-CCATGT
1 CTAA-GCATACGGAGTTCATTCCCA-GT
12883493 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
12883519 CTAAG
1 CTAAG
12883524 AGTTTGAGCC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 22 0.76
27 7 0.24
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:12884546 original size:159 final size:158
Alignment explanation
Indices: 12884157--12884564 Score: 348
Period size: 159 Copynumber: 2.6 Consensus size: 158
12884147 GCACATTTCG
* * * * * *
12884157 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGATCAGATCAGATCGAGGGTTACGGC
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAGCCGAACGAGGGTTATGGC
* * * * *
12884222 A-CCGGCATC-T-ACA-GCTCGTAGGGGGACCAGGCCAATCCCCGGCTTGCGCATTTTGCCTCTC
66 AGCAGG-ATCGTAACACGC-AG-AGGGGGACCAGGCCAATCCCCGGCTTCCGCATTATGCCTCTA
* ** * * * *
12884283 CGGTTGGTTGAGTACCCGCATGCCCGTTTCG
128 CGGTCGGTACAGTACCCGAACGCCCGATTCA
* * * ** * * *
12884314 TGGGTTGGCTTAGGCAGAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTATG
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGAGCCGAACGAGGGTTATG
** * * *
12884377 GCAGTGGGATCGATAACACGCAGAGGGGGA-CTGGACCGATCCCCGGCTTCCGTATTATGCCTCT
64 GCAGCAGGATCG-TAACACGCAGAGGGGGACCAGG-CCAATCCCCGGCTTCCGCATTATGCCTCT
* *
12884441 ACGGTCGGTACAGTGCCCGAACGCTCGATTCA
127 ACGGTCGGTACAGTACCCGAACGCCCGATTCA
*
12884473 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGAACTGAGGGTTATGG
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAGCCGAAC-GAGGGTTATGG
* *
12884537 CAGCAGGATCGGCAGCACGCAG-GGGGGA
65 CAGCAGGATC-GTAACACGCAGAGGGGGA
12884565 TCGACAGCAC
Statistics
Matches: 199, Mismatches: 40, Indels: 23
0.76 0.15 0.09
Matches are distributed among these distances:
156 3 0.02
157 51 0.26
158 20 0.10
159 115 0.58
160 8 0.04
161 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.22
Consensus pattern (158 bp):
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAGCCGAACGAGGGTTATGGC
AGCAGGATCGTAACACGCAGAGGGGGACCAGGCCAATCCCCGGCTTCCGCATTATGCCTCTACGG
TCGGTACAGTACCCGAACGCCCGATTCA
Found at i:12884567 original size:20 final size:20
Alignment explanation
Indices: 12884542--12884588 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
12884532 TATGGCAGCA
*
12884542 GGATCGGCAGCACGCAGGGG
1 GGATCGACAGCACGCAGGGG
12884562 GGATCGACAGCACGCAGGGG
1 GGATCGACAGCACGCAGGGG
12884582 GGATCGA
1 GGATCGA
12884589 GCCGATCCCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.23, C:0.23, G:0.47, T:0.06
Consensus pattern (20 bp):
GGATCGACAGCACGCAGGGG
Found at i:12884868 original size:159 final size:159
Alignment explanation
Indices: 12884567--12885005 Score: 539
Period size: 159 Copynumber: 2.8 Consensus size: 159
12884557 AGGGGGGATC
* * * *
12884567 GACAGCACGCAG-GGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACTGACTGA
1 GACAGCACACAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGACTGA
* * *
12884631 GCGCCCGCACGGTCGTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
66 GCGCCCGCACGCTCGTTTCGTGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCA
* * *
12884696 ACCGGATCGAGGGTTGTGGCAGCGGGACT
131 ACCGAATCGAGGGTTGCGGCAGCAGGACT
* * * * **
12884725 GGCAGCACACAGAGGGGGATCGGGCCGATCCCTGGCTTGCTCATTATGCCTCTTCGACCGGCTCT
1 GACAGCACACAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGACTGA
* * * * * *
12884790 GCGCCCGCACGCTCGTTTCTTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCG
66 GCGCCCGCACGCTCGTTTCGTGGATTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCC
* * * *
12884854 GACCGAATCGAGGGTTGCGGTAGTAGGATT
130 AACCGAATCGAGGGTTGCGGCAGCAGGACT
* * *
12884884 GACA--ACAC-GCAGGGGGATC-GGCCAATCCCCGGCTTGCGCATTTTGCCTCTCCGACCGACTG
1 GACAGCACACAG-AGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGACTG
* *
12884945 AGCGCCCGCACGCTCGTTTCGTGGTTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
65 AGCGCCCGCACGCTCGTTTCGTGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
12885006 CACACGGAGT
Statistics
Matches: 237, Mismatches: 40, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
155 3 0.01
156 87 0.37
157 13 0.05
158 10 0.04
159 121 0.51
160 3 0.01
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (159 bp):
GACAGCACACAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGACTGA
GCGCCCGCACGCTCGTTTCGTGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCA
ACCGAATCGAGGGTTGCGGCAGCAGGACT
Found at i:12884895 original size:337 final size:336
Alignment explanation
Indices: 12884256--12884903 Score: 838
Period size: 337 Copynumber: 1.9 Consensus size: 336
12884246 GACCAGGCCA
* ** ** * * *
12884256 ATCCCCGGCTTGCGCATTTTGCCTCTCCGGTTGGTTGAGTACCCGCATGCCCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGACTGAGCACCCGCACGCCCGTTTCGTGGATTG
** *
12884321 GCTTAGGCAGAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTATGGCAGTGGGA
66 GCTTAGGCAGAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTATGGCAGCGGGA
* * **
12884386 TCGATAACACGCAGAGGGGGACTGGACCGATCCCCGGCTTCCGTATTATGCCTCTACGGTCGGTA
131 TCGACAACACACAGAGGGGGACTGGACCGATCCCCGGCTTCCGTATTATGCCTCTACGACCGGTA
*
12884451 CAGTGCCCGAACGCTCGATTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
196 CAGCGCCCGAACGCTCGATTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
12884516 GGACCGAACTGAGGGTTATGGCAGCAGGATCGGCAGCACGCAGGGGGGATCGACAGCACGCAGGG
261 GGACCGAACTGAGGGTTACGGCAGCAGGATCGACAACACGCA-GGGGGATCGACAGCACGCAGGG
12884581 GGGATCGAGCCG
325 GGGATCGAGCCG
* * **
12884593 ATCCCCGGCTTGCGCATTCTGCCTCTTCGACTGACTGAGCGCCCGCACGGTCGTTTCGTGGATTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGACTGAGCACCCGCACGCCCGTTTCGTGGATTG
* * *
12884658 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGGCAGCGGGA
66 GCTTAGGCAGAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTATGGCAGCGGGA
* * * * * *
12884723 -CTGGCAGCACACAGAGGGGGA-TCGGGCCGATCCCTGGCTTGC-TCATTATGCCTCTTCGACCG
131 TC-GACAACACACAGAGGGGGACT-GGACCGATCCCCGGCTTCCGT-ATTATGCCTCTACGACCG
* * * * *
12884785 GCT-CTGCGCCCGCACGCTCGTTTCTTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAA
193 G-TACAGCGCCCGAACGCTCGATTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12884849 GATCGGACCGAA-TCGAGGGTTGCGGTAGTAGGATTGACAACACGCAGGGGGATCG
257 GATCGGACCGAACT-GAGGGTTACGGCAGCAGGATCGACAACACGCAGGGGGATCG
12884904 GCCAATCCCC
Statistics
Matches: 265, Mismatches: 41, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
336 13 0.05
337 251 0.95
338 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.23
Consensus pattern (336 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGACTGAGCACCCGCACGCCCGTTTCGTGGATTG
GCTTAGGCAGAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTATGGCAGCGGGA
TCGACAACACACAGAGGGGGACTGGACCGATCCCCGGCTTCCGTATTATGCCTCTACGACCGGTA
CAGCGCCCGAACGCTCGATTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
GGACCGAACTGAGGGTTACGGCAGCAGGATCGACAACACGCAGGGGGATCGACAGCACGCAGGGG
GGATCGAGCCG
Found at i:12890290 original size:26 final size:26
Alignment explanation
Indices: 12890240--12890292 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12890230 GTTGGCTTAG
* *
12890240 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
12890266 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
12890292 G
1 G
12890293 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:12890630 original size:159 final size:158
Alignment explanation
Indices: 12890266--12890768 Score: 453
Period size: 158 Copynumber: 3.2 Consensus size: 158
12890256 CCTAGTCTAA
* *** * * * * * **
12890266 GCATACGGAGTTCATTCCCAATCTAAG-ATTAGACCGGATCGAGGGTTACGGCAACAGGATAGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGCCCGAG-CCAGATCGAAGGTTGCAGCAGCAGGA-CCGC
* * * * *
12890330 AGCACGCAG-GGGGGACCAGGCCAATCCCCGGCTTGCTCATTCTACCTCTCCGGTCGGCTGAGTG
64 AGCACGTAGAGGGGGACCAGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGTG
* * *
12890394 CCCGCACGCCCGTTTCGCGGCTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * ** *
12890424 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAGCTGGATCGAGGGTTGTGGCAGCGGGACCTGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGCCCGAGCCAGATCGAAGGTTGCAGCAGCAGGACC-GC
* ** * *
12890488 AGCACGTAGAGGGGGACCAGGCCGATCCTCGGCTTGCACATTATGCCTCTCCGACCGGCTTAGCG
64 AGCACGTAGAGGGGGACCAGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGTG
* * *
12890553 CCCACACGCTCGTTTCGTGGGTTGACTTAA
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * *
12890583 GCATACGAAGTTCATTCCCAGTCTAAGATCG-GACCAGA-CTGAAGGTTGCAGTAGCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCCCGAG-CCAGATC-GAAGGTTGCAGCAGCAGGACCG-
* * * * ** *
12890646 CAGCACGTA-AAGGGGACCAGGCCGAT-CTCTGGCTTACGCATTCTGCCTTTATGGTCGACTGAG
63 CAGCACGTAGAGGGGGACCAGGCCGATCCTC-GGCTTGCACATTCTGCCTCTCCGGTCGGCTGAG
12890709 TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
127 TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
12890741 GCATACGGAGTTCATTCCCTGTCTAAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGC
12890769 ATATGGAGTT
Statistics
Matches: 278, Mismatches: 58, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
157 6 0.02
158 147 0.53
159 122 0.44
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCCCGAGCCAGATCGAAGGTTGCAGCAGCAGGACCGCAG
CACGTAGAGGGGGACCAGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGTGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12890777 original size:26 final size:26
Alignment explanation
Indices: 12890741--12890793 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12890731 GTTGGCTTAG
*
12890741 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12890767 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12890793 G
1 G
12890794 ACCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12891129 original size:26 final size:26
Alignment explanation
Indices: 12891099--12891151 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12891089 GTTGACTTAG
12891099 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
12891125 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
12891151 G
1 G
12891152 ATCGAAACGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:12891425 original size:159 final size:158
Alignment explanation
Indices: 12891125--12891632 Score: 476
Period size: 159 Copynumber: 3.2 Consensus size: 158
12891115 CCCAATCTAA
* * * * ** *
12891125 GCATACGAAGTTCATTCCCA-GTCTAAG-ATC-GAAACGGACTGAGGGTAACGGCAGCAGGATC-
1 GCATACGGAGTTCATT-CCATGTCTAAGCATCAG-ACCAGACCGAGGGTTGCGGCAGCAGGACCG
* * * * *
12891186 GCAGCACGCAGGGTGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTAAGT
64 GCAGCACGTAGGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTTCGGTCGGCTAA-T
* * *
12891251 GCCCACACGCCCGTTTCGTGGGTTGGCCTAG
128 GCCCACATGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
12891282 GCACAGGGAGTTCATTCCATGTCTAAGCCA-CAG-CCAGACCGAGGGTTGTGGTAGCGGGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAG-CATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGG
* * *
12891345 CAGCACGTAGAGGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCTTTGGCCGGCTCAAT
65 CAGCACGTAG-GGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTTCGGTCGGCT-AAT
* *
12891410 GCCCACATGCTCGTTTCGTGGGTTGACTTAT
128 GCCCACATGCTCGTTTCGTGGGTTGGCTTAG
** * * * **
12891441 GCATACGGAGTTCATTCCCCGTCTAAG-ATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCTAC
1 GCATACGGAGTTCATTCCATGTCTAAGCATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGGC
* * * * * * *
12891505 AACACGTAGGGGGGACAGGGCCGATCCCCGGCTTATGCATTTTGCCTCTTCGGTCAGCTGA-GCA
66 AGCACGTAGGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTTCGGTCGGCTAATG--
* * *
12891569 CCCGCATGCTCATTTC-TAGGTTGGCTTAG
129 CCCACATGCTCGTTTCGTGGGTTGGCTTAG
* *
12891598 GCATATGGAGTTCATTCTATGTCTAAGCATACAGA
1 GCATACGGAGTTCATTCCATGTCTAAGCAT-CAGA
12891633 GTTCATTCCC
Statistics
Matches: 281, Mismatches: 57, Indels: 24
0.78 0.16 0.07
Matches are distributed among these distances:
156 4 0.01
157 74 0.26
158 71 0.25
159 130 0.46
160 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGGC
AGCACGTAGGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTTCGGTCGGCTAATGCC
CACATGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12892637 original size:159 final size:160
Alignment explanation
Indices: 12892383--12892849 Score: 466
Period size: 159 Copynumber: 2.9 Consensus size: 160
12892373 GATCGGACCG
* * * * * *
12892383 GACCGAGGGTTGTGGCAGCA-GGATCAGCAGCACGCAG-GAGGGACCAGGTCGATCCCCGGCTTA
1 GACCGAGGGTTGTGGCA-AAGGGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTG
* * * * *
12892446 CGCATTTTGCCTCTCCTG-TCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATA
65 CGCATTATGCCTCTCCGGCT-GACTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
* * *
12892510 AGGAGTTCATTCCATGA-CTATGCCCCAGCCA
129 AGGAGTTCATTCCATGATCTAAGACCCAACCA
*
12892541 GATCGAGGGTTGTGGCAAAGGGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGC
1 GACCGAGGGTTGTGGCAAAGGGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGC
* * * * *
12892606 GCATTATGCCTCTCCGGCTGGCTGAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACG
66 GCATTATGCCTCTCCGGCTGACTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAG
*** * *
12892671 GAGTTCATTCCCA--ATCTAAGATTGAATCG
131 GAGTTCATT-CCATGATCTAAGACCCAACCA
** * * *
12892700 GACCGAGGGTTGTGGCAGTGGGACTGGTAGCACGTAGAGGGGGACCGGG-CTGATCCCCGGCTTG
1 GACCGAGGGTTGTGGCAAAGGGACCGGCAGCACGCAGAGGGGGACCGGGTC-GATCCCCGGCTTG
* * * * * * ** *
12892764 C-CTATTCTGCCTCTTCGACCGACTCAATGCCCGCACATCGGTTTCGTGGGTTGGCTTAGGCATA
65 CGC-ATTATGCCTCTCCGGCTGACTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
*
12892828 GGGAGTTCATTCCATG-TCTAAG
129 AGGAGTTCATTCCATGATCTAAG
12892850 CATAGGAGTT
Statistics
Matches: 255, Mismatches: 45, Indels: 17
0.80 0.14 0.05
Matches are distributed among these distances:
157 1 0.00
158 37 0.15
159 213 0.84
160 4 0.02
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (160 bp):
GACCGAGGGTTGTGGCAAAGGGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGC
GCATTATGCCTCTCCGGCTGACTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAG
GAGTTCATTCCATGATCTAAGACCCAACCA
Found at i:12892860 original size:25 final size:26
Alignment explanation
Indices: 12892823--12892874 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
12892813 GTTGGCTTAG
12892823 GCATAGGGAGTTCATTCCATGTCTAA
1 GCATAGGGAGTTCATTCCATGTCTAA
*
12892849 GCATA-GGAGTTCATTCCCTGTCTAA
1 GCATAGGGAGTTCATTCCATGTCTAA
12892874 G
1 G
12892875 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCATGTCTAA
Found at i:12893665 original size:26 final size:26
Alignment explanation
Indices: 12893615--12893667 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12893605 GTTGACTTAG
* *
12893615 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
12893641 GCATACAGAGTTCATTCCTAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
12893667 G
1 G
12893668 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:12894110 original size:26 final size:26
Alignment explanation
Indices: 12894074--12894126 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12894064 GTTAGCTTAG
12894074 GCATACGGAGTTCATT-TCATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
*
12894100 GCATACGGAGTTGATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
12894126 G
1 G
12894127 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:12894475 original size:159 final size:157
Alignment explanation
Indices: 12894197--12895655 Score: 558
Period size: 159 Copynumber: 8.8 Consensus size: 157
12894187 GGGACCAAGT
* * * * *
12894197 CGATCCCCGGCTTGCGCATTTTGCCTCTCCGATCGACTTAGCACCCGCACGCCCATTTCGA-GGG
1 CGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCATTTC-ATGGG
* * * ** * * ** * *
12894261 TTGCCTTAGGCATAGGGAGTTTATT-CCATGTCTAAGCCCCAGCCAAATTGAGGGTTGTGGTAGC
65 TTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGTCAGACCGAGGGTTGCGGCAGC
* ** * *
12894325 -GAGA-CTGGCAGCATGCGGAGGGGGATCGGGC
128 AG-GATC-GACAGCACACAG-GGGGGACCGGGC
* * *
12894356 CGATCCCCGGCTTGCACATTATGCCTCTCTGA-CTGGCTCAGTGCCCGCACGCTCATTTCATGGG
1 CGATCCCCGGCTTGCGCATTATGCCTCTCCGATC-GGCTCAGCGCCCGCACGCTCATTTCATGGG
*
12894420 TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCA
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-TCAGACCGAGGGTTGCGGCAGCA
12894485 GGATCGACAGCACACAGGGGGGACCGGGC
129 GGATCGACAGCACACAGGGGGGACCGGGC
* * * * * * * * *
12894514 TGGTCCCCGACTTGGGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGTACGCTCATTTCATGGGT
1 CGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCATTTCATGGGT
* * * * *
12894579 TGGCTTGGGCATACGGAGTTCATTCCCAGTTTAAGATTAGGTCGGACCGAAGGTTGCTGTAGCAG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GTCAGACCG-AGG--G-T-T-GC--
* ** * ***
12894644 GACCAGCAGCAGGATCGATAGCACGTAGGGGGGGCTAAGC
122 G----GCAGCAGGATCGACAGCACACAGGGGGGACCGGGC
* * * * * * *
12894684 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACCCGCAGGCTCATTTCATGGGA
1 CGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCATTTCATGGGT
* * * ** * * * *
12894749 TGGCTCAGG-ATACGAAGTTCATT-CCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAACA
66 TGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGTCAGACCGAGGGTTGCGGCAGCA
* * * *
12894812 GGACCGGCAGCGGGATCGACAGCATGCAAAAGGGATCGGGC
129 GGATCGACAGC---A-C-ACAG---G----GGGGACCGGGC
* * * * * * * *
12894853 TGATCCTCGGCTTACGCATTATGCCTTTTCGATCTGCCTTTCCTGGTCGGTTGAGTGCCTGCACG
1 CGATCCCCGGCTTGCGCATTATG------C---CT--C--TCC-GATCGGCTCAGCGCCCGCACG
* * * * * * **
12894918 CTCGTTCCGTGTGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
52 CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG-TCA-GA
* * * *
12894983 CCAGTCTAAGATTAGACCGGACAG-AGGGTTGCAGCAGCAGGATCGGTAGCACGCAGGGGGGATC
111 CC-G---AGGGTT-G--CGG-CAGCA-GGAT-C-G-A-CA-G--C---A-CA--CAGGGGGGACC
* *
12895047 GAGT
154 GGGC
* * * * * *
12895051 AGATCCCCGGCTTGCGCATTCTGCCTCTCC-AGTCGGCTGAGCGCCCGCACGCCCGTTTCGTGGG
1 CGATCCCCGGCTTGCGCATTATGCCTCTCCGA-TCGGCTCAGCGCCCGCACGCTCATTTCATGGG
* * ** * * *
12895115 TTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGTAG-
65 TTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATC-AGTCAGACCGAGGGTTGCGGCAGC
* * * * *
12895178 TGGGTCCAACAGCACGTA-AAGGGGGACTGGGC
128 AGGAT-CGACAGCAC--ACAGGGGGGACCGGGC
** * ** * * ** *
12895210 CGATCCCCAACTTGCGCATTATGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTTGTTGGT
1 CGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCATTTCATGGGT
* * * *
12895275 TGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGTC-AGACCGAGGGTTGCGGCAGCAG
* *
12895340 GATCGATAGCACACAGGGGGGATCGGGC
130 GATCGACAGCACACAGGGGGGACCGGGC
* * * * * * * *
12895368 CGGTCCCTGACTTGCGTC-TTCTGCCTCTCTGA-CAGACTGAGCGCACGCACGCTCATTTCATGG
1 CGATCCCCGGCTTGCG-CATTATGCCTCTCCGATC-GGCTCAGCGCCCGCACGCTCATTTCATGG
* * * * * * * *
12895431 GTTGGCTTGGGCATACGGAGTTTATTCCCAAT-TGAAGATCGGACCAGACGGATGGTTGCGGCAG
64 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AAGATCAG-TCAGACCGAGGGTTGCGGCAG
* ** * *
12895495 CAGGATCGGCAGCACGTAGGGGGTGATCAGGC
127 CAGGATCGACAGCACACAGGGGG-GACCGGGC
* * * * * * *
12895527 CGATCCCCGGCTTGCGCATTCTGCCTCTCC-AGCCGGCTGAGCGCCCGTAGGCTCGTTTCGTGGG
1 CGATCCCCGGCTTGCGCATTATGCCTCTCCGA-TCGGCTCAGCGCCCGCACGCTCATTTCATGGG
* * ** * * *
12895591 ATGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGC
65 TTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGTCAGACCGAGGGTTGCGGCAGC
12895655 A
128 A
12895656 AGACCGGCAG
Statistics
Matches: 974, Mismatches: 233, Indels: 186
0.70 0.17 0.13
Matches are distributed among these distances:
157 16 0.02
158 239 0.25
159 326 0.33
160 17 0.02
161 4 0.00
162 4 0.00
163 2 0.00
164 4 0.00
165 2 0.00
166 3 0.00
167 2 0.00
168 7 0.01
169 49 0.05
170 95 0.10
171 2 0.00
172 2 0.00
174 1 0.00
175 5 0.01
178 3 0.00
179 2 0.00
180 3 0.00
181 2 0.00
182 4 0.00
183 34 0.03
184 75 0.08
185 7 0.01
187 3 0.00
188 2 0.00
189 3 0.00
190 1 0.00
192 1 0.00
193 4 0.00
194 1 0.00
196 3 0.00
197 4 0.00
198 28 0.03
199 1 0.00
201 2 0.00
202 2 0.00
203 1 0.00
204 5 0.01
205 3 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
CGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCATTTCATGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGTCAGACCGAGGGTTGCGGCAGCAGG
ATCGACAGCACACAGGGGGGACCGGGC
Found at i:12894969 original size:26 final size:26
Alignment explanation
Indices: 12894940--12894992 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12894930 GTTGACTTAG
12894940 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
12894966 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12894992 G
1 G
12894993 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12895543 original size:317 final size:317
Alignment explanation
Indices: 12894966--12895626 Score: 703
Period size: 317 Copynumber: 2.1 Consensus size: 317
12894956 CCCAGTCTAA
* *
12894966 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACAGAGGGTTGCAGCAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCAGCAGCAGGATCGATA
* * * * * *
12895031 GCACGCAGGGGGGATCGAGTAGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCGCC
66 GCACACAGGGGGGATCGAGCAGATCCCCGACTTGCGCATTCTGCCTCTCCAGACGACTGAGCGCA
* * * * * * *
12895096 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGG
131 CGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCGAAGCCCGAGCCAG
* * * * *
12895161 ACCGAGGGTTGTGGTAGTGGGTCCAACAGCACGTAAAGGGGGACTGGGCCGATCCCCAACTTGCG
196 ACCGAGGGTTGCGGCAGAGGATCCAACAGCACGTAAAGGGGGACTAGGCCGATCCCCAACTTGCG
* * * * * * *
12895226 CATTATGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTTGTTGGTTGACTTAT
261 CATTATGCCTCTCCAGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGATGACTTAG
* *
12895283 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGC-GACAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCAG-CAGCAGGATCGAT
* * * * *
12895347 AGCACACAGGGGGGATCGGGCCGGTCCCTGACTTGCGTC-TTCTGCCTCT-CTGACAGACTGAGC
65 AGCACACAGGGGGGATCGAGCAGATCCCCGACTTGCG-CATTCTGCCTCTCCAGAC-GACTGAGC
* * * **
12895410 GCACGCACGCTCATTTCATGGGTTGGCTTGGGCATACGGAGTTTATTCCCAAT-T-GAAGATCG-
128 GCACGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CC-ATGTCGAAGCCCGA
* * ** *
12895472 GACCAGACGGATGGTTGCGGCAGCAGGAT-CGGCAGCACGT-AGGGGGTGA-TCAGGCCGATCCC
191 G-CCAGACCGAGGGTTGCGGCAG-AGGATCCAACAGCACGTAAAGGGG-GACT-AGGCCGATCCC
** * * * * *
12895534 CGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGTAGGCTCGTTTCGTGGGATGGCTTA
252 CAACTTGCGCATTATGCCTCTCCAGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGATGACTTA
12895599 G
317 G
12895600 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
12895627 CCCCAGCCGG
Statistics
Matches: 283, Mismatches: 51, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
316 14 0.05
317 260 0.92
318 7 0.02
319 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.23
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCAGCAGCAGGATCGATA
GCACACAGGGGGGATCGAGCAGATCCCCGACTTGCGCATTCTGCCTCTCCAGACGACTGAGCGCA
CGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCGAAGCCCGAGCCAG
ACCGAGGGTTGCGGCAGAGGATCCAACAGCACGTAAAGGGGGACTAGGCCGATCCCCAACTTGCG
CATTATGCCTCTCCAGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGATGACTTAG
Found at i:12895664 original size:159 final size:159
Alignment explanation
Indices: 12894966--12895666 Score: 670
Period size: 159 Copynumber: 4.4 Consensus size: 159
12894956 CCCAGTCTAA
* * * *
12894966 GCATACGGAGTTCATTCCCA-GTCTAAGATTAGACCGGACAGAGGGTTGCAGCAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGC
* ** * *
12895030 AGCACGCAGGGGGGATCGAGTAGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCGC
66 AGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGC
*
12895095 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
131 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * * *
12895124 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-TCGGACCGAGGGTTGTGGTAG-TGGGTCCA
1 GCATACGGAGTTCATTCCCATGTCTAAGATC-AGACCGGACCGAGGGTTGCGGCAGCAGGAT-CG
* * * * * * * *
12895186 ACAGCACGTAAAGGGGGA-CTGGGCCGATCCCCAACTTGCGCATTATGCCTCTTCGGCCGGCTCA
64 GCAGCACG-CAGGGGGGATC-GGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTGA
* * * * *
12895250 GTGCCCGCACGCTCGTTTTGTTGGTTGACTTAT
127 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * **
12895283 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * *
12895347 AGCACACAGGGGGGATCGGGCCGGTCCCTGACTTGCGTC-TTCTGCCTCT-CTGACAGACTGAGC
66 AGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCG-CATTCTGCCTCTCCAG-CCGGCTGAGC
* * * *
12895410 GCACGCACGCTCATTTCATGGGTTGGCTTGG
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
12895441 GCATACGGAGTTTATTCCCAAT-T-GAAGATCGGACCAGACGGATGGTTGCGGCAGCAGGATCGG
1 GCATACGGAGTTCATTCCC-ATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGG
* * *
12895504 CAGCACGTAGGGGGTGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGC
65 CAGCACGCAGGGGG-GATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGC
* * *
12895569 GCCCGTAGGCTCGTTTCGTGGGATGGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * *
12895600 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCAAGACCGG
1 GCATACGGAGTTCATTCCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGG
12895663 CAGC
65 CAGC
12895667 GGGATCGGCA
Statistics
Matches: 423, Mismatches: 101, Indels: 37
0.75 0.18 0.07
Matches are distributed among these distances:
157 10 0.02
158 175 0.41
159 228 0.54
160 10 0.02
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGC
AGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12895814 original size:26 final size:26
Alignment explanation
Indices: 12895785--12895837 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12895775 GTTGACTTAG
12895785 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
12895811 GCATACGGGGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12895837 G
1 G
12895838 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12895989 original size:845 final size:844
Alignment explanation
Indices: 12894023--12896270 Score: 2756
Period size: 854 Copynumber: 2.6 Consensus size: 844
12894013 TACGTATTCT
* ** * * *
12894023 GCCTCTTC-GGCCGGTTGAGCACCCGCACGATCGTTTCGTGGGTT-AGCTTAGGCATACGGAGTT
1 GCCTCTCCTGGCCGGTTGAGTGCCCGCACGCTCGTTCCGTGGGTTGA-CTTAGGCATACGAAGTT
** * * *
12894086 CAT-TTCATGTCTAAGCATACGGAGTTGATTCTCAGTCTAAGATC-GAACCGGACCGAGGGTTGC
65 CATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACAGAGGGTTGC
* * * * * * *
12894149 -GATAGCAGGACCAGCAGCAAGATCGACAGCATGTAATGGGGACCAAGTCGATCCCCGGCTTGCG
128 AG-CAGCAGGATC-G--G-TAG--C-AC-GCA-G---GGGGGATCGAGCCGATCCCCGGCTTGCG
* * * * * *
12894213 CATTTTGCCTCTCCGATCGACTTAGCACCCGCACGCCCATTTCGA-GGGTTGCCTTAGGCATAGG
180 CATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCATTTC-ATGGGTTGGCTTAGGCATAGG
* ** ** * * * ** * *
12894277 GAGTTTATTCCATGTCTAAGCCCCAGCCAAATTGAGGGTTGTGGTAGCGAGACTGGCAGCATGCG
244 GAGTTCATTCCATGTCTAAG-CCCAGCCGGACCGAGGGTTGTGGTAGTGGGTC-AACAGCACGCA
* * *
12894342 GAGGGGGA-TCGGGCCGATCCCCGGCTTGCACATTATGCCTC-TCTGACTGGCTCAGTGCCCGCA
307 GAGGGGGACT-GGGCCGATCCCCGGCTTGCGCATTATGCCTCTTC-GGCCGGCTCAGTGCCCGCA
* ** * * * *
12894405 CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGACCG
370 CGCTCGTTTTGTTGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCG
* * * * *
12894470 AGGGTTGCGGCAGCAGGATCGACAGCACACAGGGGGGACCGGGCTGGTCCCCGACTTGGGCATTC
435 AGGGTTGCGACAGCAGGATCGATAGCACACAGGGGGGATCGGGCCGGTCCCCGACTTGCGCATTC
* ** *
12894535 TGCCTCTCCGGTCGGTTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTGGGCATACGGAGTTC
500 TGCCTCTCC-GACGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTGGGCATACGGAGTTC
* * * *
12894600 ATTCCCAGTTTAAGATTAGGTCGGACCGAAGGTTGCTGTAGCAGGACCAGCAGCAGGATCGATAG
564 ATTCCCAGATT-AGA-TAGATCGGACCGAAGGATGC-GTAGCA-G---AGCAGCAGGATCGACAG
* * *
12894665 CACGTAGGGGGGGCTAAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACCC
622 CACGTAGGGGGGGATAAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGACTGAGCACCC
*
12894730 GCAGGCTCATTTCATGGGATGGCTCAGGATACGAAGTTCATTCCATGTCTAAGCCCCAGCCAGAT
687 GCAGGCTCATTTCATGGGATGGCTCAGGATACGAAGTTCATTCCATGTCTAAGCCCCAGCCAGAC
* * *
12894795 CGAGGGTTGTGGCAACAGGACCGGCAGCGGGATCGACAGCATGCAAAAGGGATCGGGCTGATCCT
752 CGAGGGTTGTGGCAACAAGACCGGCAGCGGGATCGACAGCATACAAAAGGGATCGGGCTAATCCT
* *
12894860 CGGCTTACGCATTATGCCTTTTCGATCT
817 CAGCTTACGCATTATGCCTTTTCGATCC
* * * *
12894888 GCCTTTCCTGGTCGGTTGAGTGCCTGCACGCTCGTTCCGTGTGTTGACTTAGGCATACGAAGTTC
1 GCCTCTCCTGGCCGGTTGAGTGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGAAGTTC
*
12894953 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACAGAGGGTTGCAGC
66 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCAGC
** *
12895018 AGCAGGATCGGTAGCACGCAGGGGGGATCGAGTAGATCCCCGGCTTGCGCATTCTGCCTCTCCAG
131 AGCAGGATCGGTAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG
* *
12895083 TCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
196 TCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * *
12895148 AAGCCCTAGTCGGACCGAGGGTTGTGGTAGTGGGTCCAACAGCACGTAAAGGGGGACTGGGCCGA
261 AAGCCC-AGCCGGACCGAGGGTTGTGGTAGTGGGT-CAACAGCACGCAGAGGGGGACTGGGCCGA
**
12895213 TCCCCAACTTGCGCATTATGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTTGTTGGTTGA
324 TCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTTGTTGGTTGA
12895278 CTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCGAGGGTTGCGACAGCAGGA
389 CTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGCGACAGCAGGA
* *
12895342 TCGATAGCACACAGGGGGGATCGGGCCGGTCCCTGACTTGCGTC-TTCTGCCTCTCTGACAGACT
453 TCGATAGCACACAGGGGGGATCGGGCCGGTCCCCGACTTGCG-CATTCTGCCTCTCCGAC-GACT
* *
12895406 GAGCGCACGCACGCTCATTTCATGGGTTGGCTTGGGCATACGGAGTTTATTCCCA-ATT-GA-AG
516 GAGCGCCCGCACGCTCATTTCATGGGTTGGCTTGGGCATACGGAGTTCATTCCCAGATTAGATAG
* * * * *
12895468 ATCGGACCAGACGGATG-GTTGC-G-GCAGCAGGATCGGCAGCACGTAGGGGGTGATCAGGCCGA
581 ATCGGACC-GAAGGATGCGTAGCAGAGCAGCAGGATCGACAGCACGTAGGGGGGGAT-AAGCCGA
* * * * *
12895530 TCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGTAGGCTCGTTTCGTGGGATGG
644 TCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGACTGAGCACCCGCAGGCTCATTTCATGGGATGG
* * * *
12895595 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAAGAC
709 CTCAGG-ATACGAAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACAAGAC
* * *
12895660 CGGCAGCGGGATCGGCAGCATACAAAGGGGGATCGGGCTAATTCC-CAGCTTGCGCATTATGCCT
773 CGGCAGCGGGATCGACAGCATACAAA-AGGGATCGGGCTAA-TCCTCAGCTTACGCATTATGCCT
12895724 TTTCGA-CC
836 TTTCGATCC
* * *
12895732 GACCTCTCCTGGCCGGTTGAGTGCCCGTACGCTCGTTCTGTGGGTTGACTTAGGCATACGGAGTT
1 G-CCTCTCCTGGCCGGTTGAGTGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGAAGTT
* * *
12895797 CATCCCCAGTCTAAGCATACGGGGTTCATTCCCAGTTTAAGATCGGACCGGACAGAGGGTTGCAG
65 CATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCAG
* * * *
12895862 TAGCAGGATCGGTAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCTG
130 CAGCAGGATCGGTAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
*
12895927 GTCGGCTGAGCGCCCGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
195 GTCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * **
12895992 TAAGCCACAGCCGGACCGAGGGTTGTGGTAGTGGGAT-AACAGCACACAGAGGGGGACCGGGCTA
260 TAAGCC-CAGCCGGACCGAGGGTTGTGGTAGTGGG-TCAACAGCACGCAGAGGGGGACTGGGCCG
* * * *
12896056 ATCCCCGGCTTACGCATTATGCCTCTTCGGTCGGCTCAGCGCCCACACGCTCGTTTTGTTGGTTG
323 ATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTTGTTGGTTG
* * *
12896121 ACTTATGCATACAGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGC-ACCTGCAGG
388 ACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGA-CAGCAGG
* ** * *
12896185 ATCGATAGCACACAGGGGGGGATCAGGCCAATCCCCGACTTGCGCATTATGCCTCTCCAACCGAC
452 ATCGATAGCACACA-GGGGGGATCGGGCCGGTCCCCGACTTGCGCATTCTGCCTCTCCGA-CGAC
*
12896250 -GAGCGCCCGCACGCTCGTTTC
515 TGAGCGCCCGCACGCTCATTTC
12896271 GTGCGTACGA
Statistics
Matches: 1209, Mismatches: 148, Indels: 73
0.85 0.10 0.05
Matches are distributed among these distances:
842 27 0.02
843 70 0.06
844 250 0.21
845 344 0.28
846 7 0.01
848 4 0.00
849 9 0.01
850 6 0.00
851 2 0.00
853 8 0.01
854 350 0.29
855 5 0.00
857 1 0.00
858 3 0.00
859 2 0.00
860 1 0.00
862 2 0.00
863 1 0.00
865 7 0.01
866 105 0.09
867 5 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (844 bp):
GCCTCTCCTGGCCGGTTGAGTGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGAAGTTC
ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCAGC
AGCAGGATCGGTAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG
TCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
AAGCCCAGCCGGACCGAGGGTTGTGGTAGTGGGTCAACAGCACGCAGAGGGGGACTGGGCCGATC
CCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTTGTTGGTTGACT
TATGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCG
ATAGCACACAGGGGGGATCGGGCCGGTCCCCGACTTGCGCATTCTGCCTCTCCGACGACTGAGCG
CCCGCACGCTCATTTCATGGGTTGGCTTGGGCATACGGAGTTCATTCCCAGATTAGATAGATCGG
ACCGAAGGATGCGTAGCAGAGCAGCAGGATCGACAGCACGTAGGGGGGGATAAGCCGATCCCCGG
CTTGCGCATTCTGCCTCTCCAGCCGACTGAGCACCCGCAGGCTCATTTCATGGGATGGCTCAGGA
TACGAAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACAAGACCGGCAGCG
GGATCGACAGCATACAAAAGGGATCGGGCTAATCCTCAGCTTACGCATTATGCCTTTTCGATCC
Found at i:12896165 original size:158 final size:156
Alignment explanation
Indices: 12895875--12896241 Score: 355
Period size: 158 Copynumber: 2.3 Consensus size: 156
12895865 CAGGATCGGT
* * * * *
12895875 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGTCGGCTGAGCGC
1 AGCACACAGGGGGGACCGGGCCAATCCCCGGCTTACGCATTATGCCTCTCTGGTCGGCTCAGCGC
* * * **
12895940 CCGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCACAGCCG
66 CCACACGCCCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG-CACAGCCG
12896005 GACCGAGGGTTGTGGTAGTGGGATAAC
130 GACCGAGGGTTGTGGTAGTGGGATAAC
*
12896032 AGCACACAGAGGGGGACCGGGCTAATCCCCGGCTTACGCATTATGCCTCT-TCGGTCGGCTCAGC
1 AGCACACAG-GGGGGACCGGGCCAATCCCCGGCTTACGCATTATGCCTCTCT-GGTCGGCTCAGC
* * ** * * *
12896096 GCCCACACGCTCGTTTTGTTGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAG-ATTAG
64 GCCCACACGCCCATTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCTAAGCA-CAG
* *** ** * *
12896159 ATCGGACCGAGGGTTGCACCT-GCAGGATCGAT
127 -CCGGACCGAGGGTTG-TGGTAGTGGGAT-AAC
* * * *
12896191 AGCACACAGGGGGGGATCAGGCCAATCCCCGACTTGCGCATTATGCCTCTC
1 AGCACACA-GGGGGGACCGGGCCAATCCCCGGCTTACGCATTATGCCTCTC
12896242 CAACCGACGA
Statistics
Matches: 170, Mismatches: 31, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
156 1 0.01
157 11 0.06
158 109 0.64
159 48 0.28
160 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
AGCACACAGGGGGGACCGGGCCAATCCCCGGCTTACGCATTATGCCTCTCTGGTCGGCTCAGCGC
CCACACGCCCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCACAGCCGG
ACCGAGGGTTGTGGTAGTGGGATAAC
Found at i:12897498 original size:159 final size:159
Alignment explanation
Indices: 12897097--12897522 Score: 464
Period size: 159 Copynumber: 2.7 Consensus size: 159
12897087 CACGCAGGGG
** * * * * *
12897097 GGATCGGGCCGATCCTCGGCTTATGCATTCTGCCTTTCCGGCTGGCTGAGCGCTCGCACGCCCGT
1 GGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGCGCCCGCACGCTCGT
* * * *
12897162 TTCGTGGGTTGGCTTAGGCATAGGGAGTT-ATT-CCATGTCTAAACCCCAACCAGACTGAGGGTT
66 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCCCCAACCAGACCGAGGGTT
* * *
12897225 ATGGCAGCGGGACCAGCAGCACGCCGAGGG
130 ATGGCAGCGGGACCAGCAGCACGCAGAAGA
* * * * * * * *
12897255 GGACCGGGCCGATCCCCGAC-CGCGCATTATGCCTCTCAGGCTGGCTCAACGCCCGTATGCTCGT
1 GGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGCGCCCGCACGCTCGT
* * * *
12897319 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCCAGCCGGACCGAGGGTTG
66 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCCAACCAGACCGAGGGTTA
* ** * *
12897384 TGGCAGTGGTTCC-GACAGCACGTATAAGA
131 TGGCAGCGGGACCAG-CAGCACGCAGAAGA
* * ** * *
12897413 GGATCAGGCCGATCCTAGGCTTGCGCATTATGCCTCTCCTCCCGGCTCAGCGCCCGCACGCTCAT
1 GGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGCGCCCGCACGCTCGT
*
12897478 TTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
66 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
12897523 ATACGGAGTT
Statistics
Matches: 217, Mismatches: 47, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
157 59 0.27
158 77 0.35
159 81 0.37
ACGTcount: A:0.18, C:0.31, G:0.29, T:0.23
Consensus pattern (159 bp):
GGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCCAACCAGACCGAGGGTTA
TGGCAGCGGGACCAGCAGCACGCAGAAGA
Found at i:12897531 original size:26 final size:26
Alignment explanation
Indices: 12897495--12897547 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12897485 GTTGACTTAG
12897495 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12897521 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12897547 G
1 G
12897548 ATTAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12897680 original size:184 final size:185
Alignment explanation
Indices: 12897336--12897706 Score: 441
Period size: 184 Copynumber: 2.0 Consensus size: 185
12897326 GTTGACTTAG
* * *
12897336 GCATACGGAGTTCATTCCCAGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGTTCCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGCACCAGCCGGACCGAGGGTTGCGGCAGTGGATCCGACA
* * * * * *
12897401 GCACGTATAAGAGGATCAGGCCGATCCTAGGCTTGCGCATTATGCCTCTCCTCCCGGCTCAGCGC
66 GCACGCAGAAGAGGACCAGGCCGATCCTAGGCTTGCGCATTATGCCTCTCCGCCCGGCTAAGCAC
*
12897466 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGG-AGTTCATCCCCA-GTCTAA
131 CCGCACGCCCATTTCGTGGGTTGACTTAGGCATA-GGTAGTTCAT-CCCATGTCTAA
* ** * *
12897521 GCATACGGAGTTCATTCCTAGTCTAAG-ATTAGATCGGATCGAGGGTTGCGGCAGTAGGAT-CGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCACCAG-CCGGACCGAGGGTTGCGGCAGT-GGATCCGA
* * * **
12897584 CAGCACGCAGGAG-GGACCAAGG-CGATCGCT-GGCTTGCTCATTCTGCCTCTCCGGTCGGCTAA
64 CAGCACGCAGAAGAGGACC-AGGCCGATC-CTAGGCTTGCGCATTATGCCTCTCCGCCCGGCTAA
* *
12897646 GCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGTAGTTCATTCCATGTCTAA
127 GCACCCGCACGCCCATTTCGTGGGTTGACTTAGGCATAGGTAGTTCATCCCATGTCTAA
12897705 GC
1 GC
12897707 CCCAGTCGGA
Statistics
Matches: 158, Mismatches: 22, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
183 5 0.03
184 87 0.55
185 63 0.40
186 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCACCAGCCGGACCGAGGGTTGCGGCAGTGGATCCGACA
GCACGCAGAAGAGGACCAGGCCGATCCTAGGCTTGCGCATTATGCCTCTCCGCCCGGCTAAGCAC
CCGCACGCCCATTTCGTGGGTTGACTTAGGCATAGGTAGTTCATCCCATGTCTAA
Found at i:12897867 original size:26 final size:26
Alignment explanation
Indices: 12897838--12897890 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12897828 TTTGGCTTAG
12897838 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
12897864 GCATACAGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12897890 G
1 G
12897891 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12899026 original size:158 final size:157
Alignment explanation
Indices: 12898547--12899038 Score: 524
Period size: 159 Copynumber: 3.1 Consensus size: 157
12898537 CCCAATCTAA
* * * *
12898547 GCATACAGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCGGTA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATCGATA
* * * * *
12898612 GCATGCAGG-GGGATTGGGTCGATCCCTGACTTGCGCATTCTGCATCTCTGGCCGACTGAGCGCC
66 GCACGCAGGAGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGG-CGACTGAGCGCC
12898676 CGCACGCTCATTTCGTGGGTTGGCTTAG
130 CGCACGCTCATTTCGTGGGTTGGCTTAG
** * ** * * *
12898704 GCATAGGGAGTTAATT-CCATGTCTAAGCCCCA-ACCGAACCGAGGGTTATGGCAGCGGGATCAA
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACCGAGGGTTACGGCAGCAGGATCGA
* * *** * * * * *
12898767 CAGCACACA-GAGGGAGACCAAGTCGATCCCCGGCTTGCGCATTATACCTCTCCGGCTGGCTCAG
64 TAGCACGCAGGA-GG-GACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGC-GACTGAG
* * *
12898831 CACCCGCACGCTCATTTCATGGGTTGACTTAG
126 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * *
12898863 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAAGGTTACGACAGAAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATCGATA
* * * * *
12898928 GCACGCAGGAGGGACTGGGCCTATCCCCAACTTGTGCATTCTGCCTCTCCGGTCGACTGAACGCC
66 GCACGCAGGAGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGG-CGACTGAGCGCC
*
12898993 CGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCATTTCGTGGGTTGGCTTAG
12899021 GCATACAGAGTTCATTCC
1 GCATACAGAGTTCATTCC
12899039 ATGTCAAGCA
Statistics
Matches: 264, Mismatches: 61, Indels: 19
0.77 0.18 0.06
Matches are distributed among these distances:
156 3 0.01
157 52 0.20
158 85 0.32
159 119 0.45
160 5 0.02
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATCGATA
GCACGCAGGAGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCGACTGAGCGCCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:12899354 original size:13 final size:13
Alignment explanation
Indices: 12899336--12899362 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
12899326 TGCACATTAT
12899336 GCCTCTCCGATCG
1 GCCTCTCCGATCG
12899349 GCCTCTCCGATCG
1 GCCTCTCCGATCG
12899362 G
1 G
12899363 TTGAGCGCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.44, G:0.26, T:0.22
Consensus pattern (13 bp):
GCCTCTCCGATCG
Found at i:12899436 original size:26 final size:26
Alignment explanation
Indices: 12899400--12899454 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
12899390 GTTGACTTAG
*
12899400 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
12899426 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
12899452 GCA
1 GCA
12899455 CACAGGGGGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:12899754 original size:26 final size:26
Alignment explanation
Indices: 12899704--12899756 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12899694 GTTGGCTTAG
* **
12899704 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACGGAGTTCATTCCACATCTAA
*
12899730 GCATACGGAGTTCATTCCCCATCTAA
1 GCATACGGAGTTCATTCCACATCTAA
12899756 G
1 G
12899757 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACATCTAA
Found at i:12900456 original size:26 final size:26
Alignment explanation
Indices: 12900426--12900476 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12900416 TTGACTTAGG
*
12900426 CATACGGAGTTCATCCCCAGTCTAAA
1 CATACGAAGTTCATCCCCAGTCTAAA
*
12900452 CATACGAAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATCCCCAGTCTAA
12900477 GATCAGACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAGTCTAAA
Found at i:12900929 original size:158 final size:158
Alignment explanation
Indices: 12900452--12900952 Score: 578
Period size: 158 Copynumber: 3.2 Consensus size: 158
12900442 CCAGTCTAAA
*
12900452 CATACGAAGTTCATTCCCA-GTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGTAGGATCGGCA
1 CATACGAAGTTCATT-CCATGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGTAGGATCGGCA
* * * * * *
12900516 GCACGCAGGGGGGAGCGGGCCGATCCCCGGCTTACGGATTCTACCTCTCCGGCCGGCTGAGCACC
65 GCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACC
* * *
12900581 C-CACACCCATTTCGTGGGTTGGCTTAGG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAGG
* * * ** * ** *
12900609 CATAGGGAGTTAATTCCATGTCTAAGCCCCA-ACTAGACCGAGGGTTGTGGCAGCGGGACCGGCA
1 CATACGAAGTTCATTCCATGTCTAAG-ATCAGACTGGACCGAGGGTTGTGGCAGTAGGATCGGCA
* * * * *
12900673 GCACGTAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCGTTATGCCTCTCTGGCCGGCTCAGCGC
65 GCACGTAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCAC
* * *
12900738 CCGCATGCTCGTTTCATGGGTTGACTTAGG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* * * *
12900768 CATACGAAGTTCATTCCCTGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGTAGGATCGACAG
1 CATACGAAGTTCATTCCATGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGTAGGATCGGCAG
* * * * * **
12900833 CACGTAGGAGGGACCGGGCCAATCCCCGACTTGTGCATTATGCCTCTCCGGCAGATTGAGCACCC
66 CACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCC
*
12900898 GCACGCTCGTTTCGTGGGTTGGCTTACG
131 GCACGCTCGTTTCGTGGGTTGGCTTAGG
12900926 CATAC-AGAGTTTCATTCCATGTCTAAG
1 CATACGA-AG-TTCATTCCATGTCTAAG
12900953 CATGCGGAGT
Statistics
Matches: 280, Mismatches: 57, Indels: 12
0.80 0.16 0.03
Matches are distributed among these distances:
156 3 0.01
157 55 0.20
158 129 0.46
159 93 0.33
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
CATACGAAGTTCATTCCATGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGTAGGATCGGCAG
CACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCC
GCACGCTCGTTTCGTGGGTTGGCTTAGG
Found at i:12901062 original size:11 final size:11
Alignment explanation
Indices: 12901046--12901075 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
12901036 TGCTCGGGGC
12901046 ACCATCGCCGG
1 ACCATCGCCGG
*
12901057 ACCATCGTCGG
1 ACCATCGCCGG
12901068 ACCATCGC
1 ACCATCGC
12901076 TGGAGAGCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.20, C:0.43, G:0.23, T:0.13
Consensus pattern (11 bp):
ACCATCGCCGG
Found at i:12901698 original size:26 final size:26
Alignment explanation
Indices: 12901662--12901711 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
12901652 GACTTAGGCA
*
12901662 TACGGAGTTCA-TCCCTAGTCTAAGCT
1 TACGAAGTTCATTCCC-AGTCTAAGCT
12901688 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
12901712 ATCAAACTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCT
Found at i:12902189 original size:26 final size:26
Alignment explanation
Indices: 12902160--12902212 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12902150 GTTGGCTTAG
* *
12902160 GCATACGGAGTTTATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
* *
12902186 GCATACAGAGTTCATTCCCTGTTTAA
1 GCATACAGAGTTCATTCCATGTCTAA
12902212 G
1 G
12902213 ATTGAACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:12902558 original size:26 final size:26
Alignment explanation
Indices: 12902528--12902580 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12902518 GTTGACTTAG
12902528 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
12902554 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
12902580 G
1 G
12902581 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:12902846 original size:158 final size:158
Alignment explanation
Indices: 12902554--12902883 Score: 376
Period size: 158 Copynumber: 2.1 Consensus size: 158
12902544 CCCAATCTAA
* ** *
12902554 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGACAGTAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCAGGATCGACA
* * * * * * * * *
12902619 GCACGCAGGGGGGACCGAGTCGATCCTCGGCTTACGCATTCTGCCTCTTCGGTCGACTGAGCGCT
66 ACACGCAGGAGGGACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCAGTCGACTGAGCACC
*
12902684 CGCACGCTCGTTTCGTGGGTTGGCCTAG
131 CGCACGCTCGTTTCGTGGGTTAGCCTAG
* * * *
12902712 GCATACGAAGTTGATTCCCAGTCTAAGATCAGACCGGACCAA-GGTT-TGTAGTAGCAGGATCGA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACG-A-CAGCAGGATCGA
* * ** *
12902775 CAACACGCAGGAGGGACTGGGCCGATCCCCGGCTTGTGCATTCTACCTCTCCAGTCGGCTGAGCA
64 CAACACGCAGGAGGGACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCAGTCGACTGAGCA
* * *
12902840 CCCGCACGCTTGTTTCTTGGGTTAGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTAGCCTAG
* *
12902870 GCATGCAAAGTTCA
1 GCATACGAAGTTCA
12902884 ATCCATGTCT
Statistics
Matches: 141, Mismatches: 29, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
156 1 0.01
157 5 0.04
158 135 0.96
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCAGGATCGACA
ACACGCAGGAGGGACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCAGTCGACTGAGCACC
CGCACGCTCGTTTCGTGGGTTAGCCTAG
Found at i:12903010 original size:26 final size:26
Alignment explanation
Indices: 12902980--12903032 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12902970 GTTGACTTAG
*
12902980 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12903006 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12903032 G
1 G
12903033 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12903370 original size:159 final size:157
Alignment explanation
Indices: 12903006--12903437 Score: 402
Period size: 159 Copynumber: 2.7 Consensus size: 157
12902996 CCCAGTCTAA
* * * * * *
12903006 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGTAGGATCGGTA
1 GCATACGGAGTTCATTCT-AGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGGAGGATCGATA
* * * * * * *
12903071 GCATGCAGAGGGGACCAGGTCGATCCTCGGCTTACGCATTCTACCTCTCTAGCCGGTTGAGCACC
65 GCACGCAGAGGGGACCAGGTCGATCCTCGGCTTACGCATTATACCTCTCCAGCCAGCTCAGCAAC
* *
12903136 CGCACGCTCGTTTCATGGGTTGCCTTAG
130 CGCACGCTCATTTCATGGGTTGACTTAG
* * ** * * * *
12903164 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGATCGAAGGTTATGGCAGGGGGATCGAT
1 GCATACGGAGTTCATTCTA-GTCTAAG-ATCAGACCAGATCGAGGGTTACGGCAGGAGGATCGAT
* * * * * * *
12903228 AGCACGCAGAGGGGGATCGGGTCGATCTTCGGCTTGCGTATTATGCCTCTCCAGCTAGCTCAGCA
64 AGCACGCAGA-GGGGACCAGGTCGATCCTCGGCTTACGCATTATACCTCTCCAGCCAGCTCAGCA
12903293 ACCGCACGCTCATTTCATGGGTTGACTTAG
128 ACCGCACGCTCATTTCATGGGTTGACTTAG
* * * ** * **
12903323 GCATACGAAGTTCATTCGTAGTCTAAGATCGGACCGGATCGAGGGTTACGATAGCAGGATCGGCA
1 GCATACGGAGTTCATTC-TAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGGAGGATCGATA
* * * *
12903388 GCACACTA-AGGGGACCAGG-CTGATCCCCGGCTTGCGCATTCTACCTCTCC
65 GCACGC-AGAGGGGACCAGGTC-GATCCTCGGCTTACGCATTATACCTCTCC
12903438 GGTCGACTGA
Statistics
Matches: 213, Mismatches: 54, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
157 2 0.01
158 87 0.41
159 122 0.57
160 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCTAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGGAGGATCGATAG
CACGCAGAGGGGACCAGGTCGATCCTCGGCTTACGCATTATACCTCTCCAGCCAGCTCAGCAACC
GCACGCTCATTTCATGGGTTGACTTAG
Found at i:12903524 original size:158 final size:156
Alignment explanation
Indices: 12903076--12904291 Score: 479
Period size: 159 Copynumber: 7.6 Consensus size: 156
12903066 CGGTAGCATG
* * **
12903076 CAGAGGGGACCAGGTCGATCCTCGGCTTACGCATTCTACCTCTCTAGCCGGTTGAGCACCCGCAC
1 CAGAGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTACCTCTCCAG-CGACTGAGCACCCGCAC
* * *
12903141 GCTCGTTTCATGGGTTGCCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGA
65 GCTCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCGTGTCTAAG-ACCAGTCAGATCGA
* * * ** * *
12903206 AGGTTATGGCAGGGGGATCGATAGCACG
129 GGGTTACGACAGCAGGATCGACAGCACA
* * * * * * * * *
12903234 CAGAGGGGGATCGGGTCGATCTTCGGCTTGCGTATTATGCCTCTCCAGCTAGCTCAGCAACCGCA
1 CAGA-GGGGACCAGGTCGATCCTCGGCTTGCGCATTCTACCTCTCCAGCGA-CTGAGCACCCGCA
* * * * * * *
12903299 CGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATT-CGTAGTCTAAGATCGGACCGGATC
64 CGCTCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCGT-GTCTAAGACCAG-TCAGATC
* *
12903363 GAGGGTTACGATAGCAGGATCGGCAGCACA
127 GAGGGTTACGACAGCAGGATCGACAGCACA
* * *
12903393 CTA-AGGGGACCAGG-CTGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGACTGAGCGCCCGC
1 C-AGAGGGGACCAGGTC-GATCCTCGGCTTGCGCATTCTACCTCTCCAG-CGACTGAGCACCCGC
* * * * * *
12903456 ATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCGTGTCTAAGACCTAGTCAGACC
63 ACGCTCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCGTGTCTAAGACC-AGTCAGATC
** ** * *
12903521 GAGGGTTGTGGTAAC-GAGATCGACAGCACG
127 GAGGGTTACGACAGCAG-GATCGACAGCACA
* * * * * * * * * * * * ** *
12903551 TAGAGGGGGATC-GAGCCAAACCCCGAG-TTGCGTATTATGCCTTTTCGATCGGGTTAGCACCCG
1 CAGA-GGGGACCAG-GTCGATCCTCG-GCTTGCGCATTCTACC-TCTCCAGCGACTGAGCACCCG
* * ** ** * * *
12903614 CACACTCGTTTCATGGGATGACTTAGGCATACAGAGTTCATTCCCAGTCTGAGATCAGATCGGA-
62 CACGCTCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCGTGTCTAAGACCAG-TCAGAT
** * *
12903678 CTGAGGGTTGTGATAGCAGGATCGACATCACA
126 C-GAGGGTTACGACAGCAGGATCGACAGCACA
* * * * * * * * * *
12903710 C-GGGAGGGACCAGGCCG-TTCTCTAGCTTACGTATTCTACCTCTCCGGTCGGCTGAGCGCTCGC
1 CAGAG-GGGACCAGGTCGATCCTC-GGCTTGCGCATTCTACCTCTCCAG-CGACTGAGCACCCGC
* * * * * ** * * *
12903773 ACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA-TTGAACCGAAC
63 ACGCTCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCGTGTCTAAGACCAG-TCAGATC
* * *
12903837 TGAGGGTTGCCACAGCAAGACCGGTAGCAGGATTGATAGCACG
127 -GAGGGTT-----A-C--GA-C---AGCAGGATCGACAGCACA
* * * * * * * * * *
12903880 TAGGGGGGAACTAGGCCGATCC-CTGGCTTGCGTATTTTGCCTCTTCGGCCGGCTGAG-AGCCCG
1 CAGAGGGG-ACCAGGTCGATCCTC-GGCTTGCGCATTCTACCTCTCCAG-CGACTGAGCA-CCCG
* * * * * *
12903943 CACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAT
62 CACGCTCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCGTGTCTAAG-ACCAGTCAGAT
* ** * * *
12904008 TGAGGGTTGTGGCAG-TGAGATCGACAGCACG
126 CGAGGGTTACGACAGCAG-GATCGACAGCACA
* * * * * * * * *
12904039 CAGAGGGGGACC-GGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCAGCCGACTCACCTCTCGC
1 CAGA-GGGGACCAGGTC-GATCCTCGGCTTGCGCATTCTACCTCTCCAG-CGACTGAGCACCCGC
* * * * * *
12904103 ACACTCGTTTCATAGGTTGACTTAGGCAT-GCAGAGTTCATTCTCAT-TCTAAGATCGGATC-GA
63 ACGCTCGTTTCATGGGTTGACTTAGGCATAG-GGAGTTCATTC-CGTGTCTAAGACCAG-TCAGA
* * ** ** *
12904165 ACGAAGGGTTGCGGTAATAGGATCG-CTAGCATA
125 TCG-AGGGTTACGACAGCAGGATCGAC-AGCACA
* * * * ** * * *
12904198 CAAGGGGGGACCGGGCCGATCCTCGGCTTGTGCATTCTGTCTCTCCGATCGACTGAGCTCCCGTA
1 C-AGAGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTACCTCTCC-AGCGACTGAGCACCCGCA
* *
12904263 CGCTCGTTTCGTGGGTTGGCTTAGGCATA
64 CGCTCGTTTCATGGGTTGACTTAGGCATA
12904292 CAAAGTTCAT
Statistics
Matches: 794, Mismatches: 206, Indels: 114
0.71 0.18 0.10
Matches are distributed among these distances:
157 15 0.02
158 218 0.27
159 411 0.52
160 22 0.03
162 1 0.00
163 1 0.00
166 2 0.00
170 17 0.02
171 101 0.13
172 5 0.01
173 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (156 bp):
CAGAGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTACCTCTCCAGCGACTGAGCACCCGCACG
CTCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCGTGTCTAAGACCAGTCAGATCGAGG
GTTACGACAGCAGGATCGACAGCACA
Found at i:12903584 original size:317 final size:314
Alignment explanation
Indices: 12903006--12903825 Score: 883
Period size: 317 Copynumber: 2.6 Consensus size: 314
12902996 CCCAGTCTAA
* * * * * *
12903006 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGTAGGATCGGTA
1 GCATACGAAGTTCATTCT-AGTCTAAGATCAGACCGGA-CGAGGGTTGCGATAGCAGGATCGGCA
** * ** * * *
12903071 GCATGCAGAGGGGACCAGG-TCGATCCTCGGCTTACGCATTCTACCTCTCTAGCCGGTTGAGCAC
64 GCACACA-AGGGGACCAGGCT-GATCCCCGGCTTACGCATTCTACCTCTCCGGTCGGCTGAGCGC
* * *
12903135 CCGCACGCTCGTTTCATGGGTTGCCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCA
127 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGTCA
* ** * * * * * * **
12903200 GATCGAAGGTTATGGCAGGGGGATCGATAGCACGCAGAGGGGGATCGGGTCGATCTTCGGCTTGC
192 GACCGAAGGTTATGGCAACGAGATCGACAGCACGCAGAGGGGGATCGAGCCAAACCCCGGCTTGC
* * *
12903265 GTATTATGCCTCTCC-AGCTAGCTCAGCAACCGCACGCTCATTTCATGGGTTGACTTAG
257 GTATTATGCCTCTCCGATC-AGCTCAGCAACCGCACACTCATTTCATGGGATGACTTAG
* *
12903323 GCATACGAAGTTCATTCGTAGTCTAAGATCGGACCGGATCGAGGGTTACGATAGCAGGATCGGCA
1 GCATACGAAGTTCATTC-TAGTCTAAGATCAGACCGGA-CGAGGGTTGCGATAGCAGGATCGGCA
* *
12903388 GCACACTAAGGGGACCAGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGACTGAGCGCC
64 GCACAC-AAGGGGACCAGGCTGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGGCTGAGCGCC
* * * * *
12903453 CGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCGTGTCTAAGACCTAGTCAG
128 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGTCAG
* * * *
12903518 ACCGAGGGTTGTGGTAACGAGATCGACAGCACGTAGAGGGGGATCGAGCCAAACCCCGAG-TTGC
193 ACCGAAGGTTATGGCAACGAGATCGACAGCACGCAGAGGGGGATCGAGCCAAACCCCG-GCTTGC
* * * * * * *
12903582 GTATTATGCCTTTTCGATCGGGTTAGCACCCGCACACTCGTTTCATGGGATGACTTAG
257 GTATTATGCCTCTCCGATCAGCTCAGCAACCGCACACTCATTTCATGGGATGACTTAG
* * * * *
12903640 GCATAC-AGAGTTCATTCCCAGTCTGAGATCAGATCGGACTGAGGGTTGTGATAGCAGGATCGAC
1 GCATACGA-AGTTCATT-CTAGTCTAAGATCAGACCGGAC-GAGGGTTGCGATAGCAGGATCGGC
* ** * * * ** *
12903704 ATCACACGGGAGGGACCAGGCCGTTCTCTAGCTTACGTATTCTACCTCTCCGGTCGGCTGAGCGC
63 AGCACACAAG-GGGACCAGGCTGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGGCTGAGCGC
* * *
12903769 TCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA
127 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGA
12903826 TTGAACCGAA
Statistics
Matches: 417, Mismatches: 77, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
316 3 0.01
317 407 0.98
318 7 0.02
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (314 bp):
GCATACGAAGTTCATTCTAGTCTAAGATCAGACCGGACGAGGGTTGCGATAGCAGGATCGGCAGC
ACACAAGGGGACCAGGCTGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGTCAGACC
GAAGGTTATGGCAACGAGATCGACAGCACGCAGAGGGGGATCGAGCCAAACCCCGGCTTGCGTAT
TATGCCTCTCCGATCAGCTCAGCAACCGCACACTCATTTCATGGGATGACTTAG
Found at i:12904034 original size:488 final size:488
Alignment explanation
Indices: 12903404--12904313 Score: 1094
Period size: 488 Copynumber: 1.9 Consensus size: 488
12903394 TAAGGGGACC
* * * *
12903404 AGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGACTGAGCGCCCGCATGCCCGTTTCGT
1 AGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGAGCCCGCACGCCCGTTTCGT
* * * *
12903469 GGGTTGGCTTAGGCATAGGGAGTTTATTCCGTGTCTAAGACCTAGTCAGACCGAGGGTTGTGGTA
66 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGTCAGACCGAGGGTTGTGGCA
* * * * *
12903534 ACGAGATCGACAGCACGTAGAGGGGGATCGAGCCAAACCCCGAG-TTGCGTATTATGCCTTTTC-
131 ACGAGATCGACAGCACGCAGAGGGGGACCGAGCCAAACCCCG-GCTTGCGCATTATGCCTCTCCA
* ** * * *
12903597 GATCGGGTTAGCACCCGCACACTCGTTTCATGGGATGACTTAGGCATACAGAGTTCATTCCCAGT
195 G-CCGACTCACCACCCGCACACTCGTTTCATAGGATGACTTAGGCATACAGAGTTCATTCCCAGT
* * * * *
12903662 CTGAGATCAGATCGGACTG-AGGGTTGTGATAGCAGGATCG-A-CATCACACGGGAGGGACCAGG
259 CTAAGATCAGATCGAAC-GAAGGGTTGCGATAACAGGATCGCAGCAT-ACAAGGG-GGGACCAGG
* * * * *
12903724 CCG-TTCTCTAGCTTACGTATTCTACCTCTCCGGTCGGCTGAGCGCTCGCACGCTCATTTCGTGG
321 CCGATCCTC-AGCTTACGCATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCGTGG
**
12903788 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATTGAACCGAACTGAGGGTTGCCACAGC
385 GTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGATTGAACCGAACTGAGGGTTGCCACAGC
12903853 AAGACCGGTAGCAGGATTGATAGCACGTAGGGGGGAACT
450 AAGACCGGTAGCAGGATTGATAGCACGTAGGGGGGAACT
* * * * * * *
12903892 AGGCCGATCCCTGGCTTGCGTATTTTGCCTCTTCGGCCGGCTGAGAGCCCGCACGCTCGTTTCGT
1 AGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGAGCCCGCACGCCCGTTTCGT
* * * **
12903957 GGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATTGAGGGTTGTGGCA
66 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGTCAGACCGAGGGTTGTGGCA
** * ** * *
12904022 GTGAGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCAG
131 ACGAGATCGACAGCACGCAGAGGGGGACCGAGCCAAACCCCGGCTTGCGCATTATGCCTCTCCAG
* * * * * *
12904087 CCGACTCACCTCTCGCACACTCGTTTCATAGGTTGACTTAGGCATGCAGAGTTCATTCTCATTCT
196 CCGACTCACCACCCGCACACTCGTTTCATAGGATGACTTAGGCATACAGAGTTCATTCCCAGTCT
* * * *
12904152 AAGATCGGATCGAACGAAGGGTTGCGGTAATAGGATCGCTAGCATACAAGGGGGGACCGGGCCGA
261 AAGATCAGATCGAACGAAGGGTTGCGATAACAGGATCGC-AGCATACAAGGGGGGACCAGGCCGA
* ** ** * * *
12904217 TCCTCGGCTTGTGCATTCTGTCTCTCCGATCGACTGAGCTCCCGTACGCTCGTTTCGTGGGTTGG
325 TCCTCAGCTTACGCATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGG
*
12904282 CTTAGGCATACAAAGTTCATTCCATGTTTAAG
390 CTTAGGCATACAAAGTTCATTCCATGTCTAAG
12904314 CATACGGAGT
Statistics
Matches: 346, Mismatches: 69, Indels: 13
0.81 0.16 0.03
Matches are distributed among these distances:
487 2 0.01
488 241 0.70
489 89 0.26
490 11 0.03
491 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (488 bp):
AGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGAGCCCGCACGCCCGTTTCGT
GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGTCAGACCGAGGGTTGTGGCA
ACGAGATCGACAGCACGCAGAGGGGGACCGAGCCAAACCCCGGCTTGCGCATTATGCCTCTCCAG
CCGACTCACCACCCGCACACTCGTTTCATAGGATGACTTAGGCATACAGAGTTCATTCCCAGTCT
AAGATCAGATCGAACGAAGGGTTGCGATAACAGGATCGCAGCATACAAGGGGGGACCAGGCCGAT
CCTCAGCTTACGCATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGC
TTAGGCATACAAAGTTCATTCCATGTCTAAGATTGAACCGAACTGAGGGTTGCCACAGCAAGACC
GGTAGCAGGATTGATAGCACGTAGGGGGGAACT
Found at i:12904698 original size:26 final size:26
Alignment explanation
Indices: 12904668--12904720 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12904658 GTTGACTTAG
12904668 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
* *
12904694 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12904720 G
1 G
12904721 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12905940 original size:26 final size:26
Alignment explanation
Indices: 12905903--12905955 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12905893 GTTGACTTAG
12905903 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
12905929 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12905955 G
1 G
12905956 ATTAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12906230 original size:159 final size:156
Alignment explanation
Indices: 12905963--12906769 Score: 596
Period size: 159 Copynumber: 5.1 Consensus size: 156
12905953 AAGATTAGAT
** * * * *
12905963 CGGACCGAGGGTTACGGTAGTAGGATCGGCAGCACGCAGGGGGGACTGAGCCGATCCCCGGCTCG
1 CGGACCGAGGGTTGTGCTAGTAGGATCGGCAGCACGCAGGGGGGAC-GGGCTGATCCCCGGCTTG
* * ** * * * *
12906028 TGCATTCTGCCTCTCTGACCGGCTAAGCGCCAGCACGCCCATTTCGTGGGTTAGCTTAGGCATAA
65 CGCATTCTGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCATTTCATGGGTT-GCTTAGGCATAA
*
12906093 GGAGTTCATTCTATGTCTAAGCCCCAGC
129 GGAGTTCATTCCATGTCTAAGCCCCAGC
* * * *
12906121 CGGACCGAGGGTTGTGCTAGTGGGACCGGCAGCACACAGAGGGGGACTGGGCTGGTCCCCGGCTT
1 CGGACCGAGGGTTGTGCTAGTAGGATCGGCAGCACGCAG-GGGGGAC-GGGCTGATCCCCGGCTT
* * *
12906186 GCCCATTATGCCTCTCCGGTCGGCTCAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATA
64 GCGCATTCTGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTG-CTTAGGCATA
* ** * *
12906251 CGGAGTTCATTCCCA-GTCTAAG-ATCGGA
128 AGGAGTTCATT-CCATGTCTAAGCCCCAGC
* * * * * * *
12906279 CAGACTGAGGGTTGCAGC-AGTAGGATCGACAGCACG-TGGGGGGAACGAG-TCGATCCCTGGCT
1 CGGACCGAGGGTTG-TGCTAGTAGGATCGGCAGCACGCAGGGGGG-ACGGGCT-GATCCCCGGCT
* * * * * *
12906341 TGCGCATTCTACCTCTCCGATCGGCTGAGCGCTCGTACGCCCATTTCATGGGTTGGCTTAGGCAT
63 TGCGCATTCTGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCATTTCATGGGTT-GCTTAGGCAT
* * *
12906406 AGGGAGTTCATTCCATCTCTAAGCCCCAGT
127 AAGGAGTTCATTCCATGTCTAAGCCCCAGC
* * ** * *
12906436 AGGACCAAGGGTTGTGGC-AGCGGGA-CTGGCAGCACGCAGAGGGGGACCGGGCTGATTCCCAGC
1 CGGACCGAGGGTTGT-GCTAGTAGGATC-GGCAGCACGCAG-GGGGGA-CGGGCTGATCCCCGGC
* * * ** * * *
12906499 TTGCGCATTATGCCTC-CCCGACTGGCTCAGCGCTGGCATGCTCGTTTCGTGGGTTGACTTAGGC
62 TTGCGCATTCTGCCTCTCCGGTC-GGCTCAGCGCCCGCACGCTCATTTCATGGGTTG-CTTAGGC
* * ** * *
12906563 ATGTA-GAGTTCATTCCCA-ATCTAAGATCGAAC
125 AT-AAGGAGTTCATT-CCATGTCTAAGCCCCAGC
* * * * * * * **
12906595 CAGATCGAGGGTTGCGGTAGCAGGATCGACAGTACGCACGGGGGGAGCGGG-TCGATCCCCAACT
1 CGGACCGAGGGTTGTGCTAGTAGGATCGGCAGCACGCA-GGGGGGA-CGGGCT-GATCCCCGGCT
* * * * *
12906659 TGCGCATTCTGCCTATCCGG-CAGACTGC-GCACCCGCACACTCGTTTCATGGGTTGGCTTAGGC
63 TGCGCATTCTGCCTCTCCGGTC-GGCT-CAGCGCCCGCACGCTCATTTCATGGGTT-GCTTAGGC
*
12906722 ATACGGAGTTCATTCCATGTCTAAGCCCCAGC
125 ATAAGGAGTTCATTCCATGTCTAAGCCCCAGC
*
12906754 CGGATCGAGGGTTGTG
1 CGGACCGAGGGTTGTG
12906770 GCAGTAGAAC
Statistics
Matches: 503, Mismatches: 118, Indels: 55
0.74 0.17 0.08
Matches are distributed among these distances:
155 4 0.01
156 88 0.17
157 31 0.06
158 73 0.15
159 294 0.58
160 13 0.03
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (156 bp):
CGGACCGAGGGTTGTGCTAGTAGGATCGGCAGCACGCAGGGGGGACGGGCTGATCCCCGGCTTGC
GCATTCTGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGCTTAGGCATAAGG
AGTTCATTCCATGTCTAAGCCCCAGC
Found at i:12906574 original size:315 final size:316
Alignment explanation
Indices: 12905929--12906773 Score: 982
Period size: 315 Copynumber: 2.7 Consensus size: 316
12905919 CCCAGTCTAA
* ** * * * * *
12905929 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTACGGTAGTAGGATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGTAGGATCGACA
* * * * *
12905994 GCACGCAGGGGGG-ACTGAGCCGATCCCCGGCTCGTGCATTCTGCCTCTCTGACCGGCTAAGCGC
66 GCACGCAGGGGGGAAC-GAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * *
12906058 CAGCACGCCCATTTCGTGGGTTAGCTTAGGCATAAGGAGTTCATTCTATGTCTAAGCCCCAGCCG
130 C-GCACGCCCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * *
12906123 GACCGAGGGTTGT-GCTAGTGGGACCGGCAGCACACAGAGGGGGACTGGGCTGGTCCCCGGCTTG
194 GACCGAGGGTTGTGGC-AGCGGGACCGGCAGCACACAGAGGGGGACCGGGCTGATCCCCAGCTTG
* *
12906187 CCCATTATGCCTCTCCGGTCGGCTCAGCGCCCACACGCTCATTTCATGGGTTGACTTAG
258 CCCATTATGCCTCCCCGCTCGGCTCAGCGCCCACACGCTCATTTCATGGGTTGACTTAG
* * *
12906246 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACTGAGGGTTGCAGCAGTAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGTAGGATCGACA
* * * *
12906310 GCACG-TGGGGGGAACGAGTCGATCCCTGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCT
66 GCACGCAGGGGGGAACGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC-
* * * **
12906374 CGTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCCAGTAGG
130 CGCACGCCCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * * * *
12906439 ACCAAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGACCGGGCTGATTCCCAGCTTGCG
195 ACCGAGGGTTGTGGCAGCGGGACCGGCAGCACACAGAGGGGGACCGGGCTGATCCCCAGCTTGCC
*** * * *
12906504 CATTATGCCTCCCCGACT-GGCTCAGCGCTGGCATGCTCGTTTCGTGGGTTGACTTAG
260 CATTATGCCTCCCCG-CTCGGCTCAGCGCCCACACGCTCATTTCATGGGTTGACTTAG
** * * *
12906561 GCATGTAGAGTTCATTCCCAATCTAAGATCGAACCAGA-TCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTTGCGGTAGTAGGATCGAC
* * * ** * * * * *
12906625 AGTACGCACGGGGGGAGCGGGTCGATCCCCAACTTGCGCATTCTGCCTATCCGGCAGACTGCGCA
65 AGCACGCA-GGGGGGAACGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC-
* * * * *
12906690 CCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
128 GCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCC
*
12906755 GGATCGAGGGTTGTGGCAG
193 GGACCGAGGGTTGTGGCAG
12906774 TAGAACCGAT
Statistics
Matches: 444, Mismatches: 75, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
315 231 0.52
316 66 0.15
317 31 0.07
318 115 0.26
319 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (316 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGTAGGATCGACA
GCACGCAGGGGGGAACGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
GCACGCCCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
CCGAGGGTTGTGGCAGCGGGACCGGCAGCACACAGAGGGGGACCGGGCTGATCCCCAGCTTGCCC
ATTATGCCTCCCCGCTCGGCTCAGCGCCCACACGCTCATTTCATGGGTTGACTTAG
Found at i:12907625 original size:300 final size:302
Alignment explanation
Indices: 12907070--12907657 Score: 727
Period size: 300 Copynumber: 2.0 Consensus size: 302
12907060 CATACGCCCA
*
12907070 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCCAACCGGACCGAGAGTT
1 TTTCATGGGTTGGCTTAGACATAGGGAGTTCATTCCATCTCTAAGCCCCAACCGGACCGAGAGTT
* * * *
12907135 GTGGCAGCGAGCACTGACAGTAAGCAGAGGTGGACCAGGCCGATCCCTAGCTTGCACATTATACC
66 GTGGCAGCGAGCACCGACAGCAAGCAGAGGGGGACCAGGCCGATCCCGAGCTTGCACATTATACC
* * * * * * * **
12907200 TCTTCGGTCGGTTCAACGCCCGTAGGCTCATTTTATGGGTTGACTTATTCATACAGAGTTCATTC
131 TCTCCCGTCAGCTCAACGCCCGTACGCTCAGTTCATGGGTTGACTTAAGCATACAGAGTTCATTC
* **
12907265 CCATTCTAAGATCAGACCAGACCGAGGGTTGTGGCAACAAGATCGACAGCACGCAGGGGGGACCA
196 CCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAACAAGATCGACAGCACGCAGGGGGGA-CA
12907330 GACT-GATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTG
260 GACTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTG
* * * * * * * *
12907372 TTTCGTGGGTTGGCTTAGATATAGGGAGTTCATTGCATGTCTAAGCCCTAGCCGGACTGAGGGTT
1 TTTCATGGGTTGGCTTAGACATAGGGAGTTCATTCCATCTCTAAGCCCCAACCGGACCGAGAGTT
* * * * * *
12907437 TTGGCAGCG-GGACCCG-TAGCACGCAGAGGGGGACCAGGCCGATCCTCGA-CTTGCGCATTATG
66 GTGGCAGCGAGCA-CCGACAGCAAGCAGAGGGGGACCAGGCCGATCC-CGAGCTTGCACATTATA
* * *
12907499 CCTCTCCCGTCAGCTCAGCGCCCGTACGCTC-GTTCGTGGGTTGACTTAAGCATACGGAGTTCAT
129 CCTCTCCCGTCAGCTCAACGCCCGTACGCTCAGTTCATGGGTTGACTTAAGCATACAGAGTTCAT
* * ** * *
12907563 TCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGTAGGATCGACAGCACGTAGGGGGGAC
194 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAACAAGATCGACAGCACGCAGGGGGGAC
* **
12907628 TGGGTCGATCCCCGGCTTGCGCATTCTGCC
259 AGACTCGATCCCCGGCTTGCGCATTCTGCC
12907658 ACTCCGACTG
Statistics
Matches: 240, Mismatches: 43, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
299 3 0.01
300 106 0.44
301 63 0.26
302 68 0.28
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (302 bp):
TTTCATGGGTTGGCTTAGACATAGGGAGTTCATTCCATCTCTAAGCCCCAACCGGACCGAGAGTT
GTGGCAGCGAGCACCGACAGCAAGCAGAGGGGGACCAGGCCGATCCCGAGCTTGCACATTATACC
TCTCCCGTCAGCTCAACGCCCGTACGCTCAGTTCATGGGTTGACTTAAGCATACAGAGTTCATTC
CCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAACAAGATCGACAGCACGCAGGGGGGACAG
ACTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTG
Found at i:12907865 original size:184 final size:184
Alignment explanation
Indices: 12907548--12907914 Score: 468
Period size: 184 Copynumber: 2.0 Consensus size: 184
12907538 GTTGACTTAA
* * * * *
12907548 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTATAAGATCAGACCAGACCGAGGGCTACGGCAGCAGGATCGACA
* * * * * *
12907613 GCACGTAGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCACTCCGACTGGCTGAACGCC
66 GCACGCAGGGGGGACAGGCTCGATCCCCGACTTGCACATTCTACCACTCCGACTGGCTGAACGCC
* * ** *
12907678 CGCACGCTCGTTTCTTGGGTTGGCTCAGGCATATGGAGTCCATTTCATGTCTAC
131 CGCACCCTCGTTTCGTGGGTTGGCTCAGGCATACAGAGTCCATTCCATGTCTAC
**
12907732 GCATACGGAGTTCATTCCCAGTATAAGATCAGACCAGACCGAGGGCTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTATAAGATCAGACCAGACCGAGGGCTACGGCAGCAGGATCGACA
* * * * **
12907797 GCATGCAGGGGGGATCAGGCT-GATCCTCGACTTGCACATTCTACCTCTCCG-GTCGGCTGAGTG
66 GCACGCAGGGGGGA-CAGGCTCGATCCCCGACTTGCACATTCTACCACTCCGACT-GGCTGAACG
* *
12907860 CCCGCACCCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
129 CCCGCACCCTCGTTTCGTGGGTTGGCTCAGGCATACAGAGTCCATTCCATGTCTA
12907915 AGCCCCAACC
Statistics
Matches: 155, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
183 1 0.01
184 150 0.97
185 4 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTATAAGATCAGACCAGACCGAGGGCTACGGCAGCAGGATCGACA
GCACGCAGGGGGGACAGGCTCGATCCCCGACTTGCACATTCTACCACTCCGACTGGCTGAACGCC
CGCACCCTCGTTTCGTGGGTTGGCTCAGGCATACAGAGTCCATTCCATGTCTAC
Found at i:12909068 original size:184 final size:184
Alignment explanation
Indices: 12908734--12909099 Score: 459
Period size: 184 Copynumber: 2.0 Consensus size: 184
12908724 TTGACTTAGG
* * * * *
12908734 CATACAGAGTTCATTCCTAGTCTAAGATCGGACCAGACTGAGGGTTACGATAGCAGGATCGACAG
1 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTGACGACAGCAGGATCGACAG
* * * * * *
12908799 CACACAGGGGGGACTGGGTCGATCCCTGGCTTGCGCATTCTGTCTTTCCGACCGACTGAACGCCC
66 CACACAGAGGGGACTGAGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGACTGAACGCCC
* *
12908864 GCACGCTCGTTTCCTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTACA
131 GCACGCTCCTTTCCTGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTACA
* *
12908918 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGCTGCCG-CAGCAGGATC-AGC
1 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGG-TGACGACAGCAGGATCGA-C
** * * * * **
12908981 AGCATGCAGAGGGGACTGAGCCGAT-CTTCAGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGTG
64 AGCACACAGAGGGGACTGAGCCGATCCCT-AGCTTGCGCATTCTGCCTCTCCGACCGACTGAACG
* *
12909045 CCCGTACGCTCCTTTCGTGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTA
128 CCCGCACGCTCCTTTCCTGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTA
12909100 ATCCCCATCC
Statistics
Matches: 154, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
183 3 0.02
184 148 0.96
185 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTGACGACAGCAGGATCGACAG
CACACAGAGGGGACTGAGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGACTGAACGCCC
GCACGCTCCTTTCCTGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTACA
Found at i:12909563 original size:159 final size:159
Alignment explanation
Indices: 12909351--12910017 Score: 528
Period size: 159 Copynumber: 4.2 Consensus size: 159
12909341 GTAGGCAGAT
* * * * * * *
12909351 CGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTTTGGCCGGCTGAGCACCCGCACGC-CTGTTTC
1 CGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTC-ATTTC
* * * * * *
12909415 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTTTAAGCCCCAGTC-GAACCGAAGGTTATG
65 ATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAG-ACCGAAGGTTGTG
* * *
12909479 GCAACGGGATCGACAGCACTTAGAGGGGGAT
129 GCAGCGGGATCGACAGCACATAGAGGGGGAC
* * * * *
12909510 CGGGCCGATCCCTGGCTTACGCATTATGCCTCTTCGGTCGGCTCACCGCCCGCACGCTCATTTCG
1 CGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCATTTCA
* * ** * **
12909575 TGGGTTGACTTATGCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGACCAGACCGAGGGTTGCA
66 TGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAAGGTTGTG
* ** * *
12909638 GTAGTAGGATCGACAGCACGTAGA-GGGAAC
129 GCAGCGGGATCGACAGCACATAGAGGGGGAC
* * * * * * * * * *
12909668 CGGGCCAATCCCCGGCTTGTGCATTCTGCCAC-TCTGGCCGGTTGAGTGCCTGCACGCCCGTTTC
1 CGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTC-GGCCGGCTCAGCGCCCGCACGCTCATTTC
* * * *
12909732 ATGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAAGCCCTAGCCAGACCG-AGAGTTGTG
65 ATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAG-GTTGTG
* *
12909796 GCAGCGGGA-CTGGCAACACATAGAGGGGGAC
129 GCAGCGGGATC-GACAGCACATAGAGGGGGAC
* * * ** * *
12909827 CAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGTACGCTCATTTCG
1 CGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCATTTCA
** * * **
12909892 TGGGTTGACTTAGGCATACGGAGTTCATTCCCA-G-CTAAG-ATCAGACCAGATCGAGGGTTGCA
66 TGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAAGGTTGTG
* * * * *
12909954 GCAGCAGGATCGATAGCACGTGGGGGGGGAC
129 GCAGCGGGATCGACAGCACATAGAGGGGGAC
** * * *
12909985 TTGGCTGATCCCCGACTTGCGCATTCTGCCTCT
1 CGGGCCGATCCCCGGCTTGCGCATTATGCCTCT
12910018 CCGACCAATT
Statistics
Matches: 390, Mismatches: 103, Indels: 31
0.74 0.20 0.06
Matches are distributed among these distances:
157 8 0.02
158 181 0.46
159 194 0.50
160 7 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
CGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCATTTCA
TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTGTGGC
AGCGGGATCGACAGCACATAGAGGGGGAC
Found at i:12909756 original size:158 final size:158
Alignment explanation
Indices: 12909279--12910065 Score: 629
Period size: 158 Copynumber: 5.0 Consensus size: 158
12909269 TAAGCATATA
* * * * *
12909279 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTAC-GATAGTAGGATCGACAGCACGT
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAG-CAGCAGGATCGACAGCACGT
** * * * * *
12909343 AG-GCAGATCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTTTGGCCGGCTGAGCACCCGCACG
65 AGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACG
*
12909407 C-CTGTTTCATGGGTTGGCTTAGGCATAGG
130 CTC-GTTTCATGGGTTGGCTTAGGCATACG
** * ** * * * *** * * *
12909436 GAGTTCATTCCTTGTTTAAGCCCCAGTCGA-ACCGAAGGTTATGGCAACGGGATCGACAGCACTT
1 GAGTTCATTCCCAGTCTAAG-ATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGT
* * * * * * *
12909500 AGAGGGGGATCGGGCCGATCCCTGGCTTACGCATTATGCCTCT-TCGGTCGGCTCACCGCCCGCA
65 AGA-GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCT-GGCCGGCTGAGCGCCCGCA
* * * *
12909564 CGCTCATTTCGTGGGTTGACTTATGCATACG
128 CGCTCGTTTCATGGGTTGGCTTAGGCATACG
* * *
12909595 GAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGTAGTAGGATCGACAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGTA
* * * * * * *
12909660 GAGGGAACCGGGCCAATCCCCGGCTTGTGCATTCTGCCACTCTGGCCGGTTGAGTGCCTGCACGC
66 GAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGC
* *
12909725 CCGTTTCATGGGTTGGCTTAGGCATAGG
131 TCGTTTCATGGGTTGGCTTAGGCATACG
* ** * ** * * *
12909753 GAGTTCATT-GCATGTCTAAGCCCTAG-CCAGACCGAGAGTTGTGGCAGCGGGA-CTGGCAACAC
1 GAGTTCATTCCCA-GTCTAAGATC-AGACCAGACCGAGGGTTGCAGCAGCAGGATC-GACAGCAC
* * * * * ** * *
12909815 ATAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGT
63 GTAGA-GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGC
* * *
12909880 ACGCTCATTTCGTGGGTTGACTTAGGCATACG
127 ACGCTCGTTTCATGGGTTGGCTTAGGCATACG
* *
12909912 GAGTTCATTCCCAG-CTAAGATCAGACCAGATCGAGGGTTGCAGCAGCAGGATCGATAGCACGTG
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGT-
* * ** * * * * *** * * *
12909976 GGGGGGGACTTGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAATTGAACGCCTGTACG
65 AGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACG
*
12910041 CTCGTTTCCTGGGTTGGCTTAGGCA
130 CTCGTTTCATGGGTTGGCTTAGGCA
12910066 AATGAAGCTC
Statistics
Matches: 484, Mismatches: 130, Indels: 31
0.75 0.20 0.05
Matches are distributed among these distances:
157 49 0.10
158 231 0.48
159 201 0.42
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGTA
GAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCATGGGTTGGCTTAGGCATACG
Found at i:12909853 original size:317 final size:316
Alignment explanation
Indices: 12909279--12910088 Score: 975
Period size: 317 Copynumber: 2.6 Consensus size: 316
12909269 TAAGCATATA
* * * *
12909279 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTAC-GATAGTAGGATCGACAGCACGT
1 GAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAG-TAGTAGGATCGACAGCACGT
* * * * * * *
12909343 -AGGCAGATCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTTTGGCCGGCTGAGCACCCGCACG
65 GAGGGA-ACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCGCCTGCACG
* * * *
12909407 CCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTTTAAGCCCCAGTCGAACCGAA
129 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAA
* * * * * *
12909472 GGTTATGGCAACGGGATCGACAGCACTTAGAGGGGGATCGGGCCGATCCCTGGCTTACGCATTAT
194 GGTTATGGCAACGGGATCGACAACACATAGAGGGGGACCAGGCCGATCCCCGACTTACGCATTAT
* * *
12909537 GCCTCTTCGGTCGGCTCACCGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACG
259 GCCTCTCCGATCGGCTCACCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
12909595 GAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGTAGTAGGATCGACAGCACGTA
1 GAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGTAGTAGGATCGACAGCACGT-
** * * *
12909660 GAGGGAACCGGGCCAATCCCCGGCTTGTGCATTCTGCCACTCTGGCCGGTTGAGTGCCTGCACGC
65 GAGGGAACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCGCCTGCACGC
* *
12909725 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAAGCCCTAGCC-AGACCG-A
130 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGA-ACCGAA
* * * *
12909788 GAGTTGTGGCAGCGGGA-CTGGCAACACATAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATT
194 G-GTTATGGCAACGGGATC-GACAACACATAGAGGGGGACCAGGCCGATCCCCGACTTACGCATT
* *
12909852 ATGCCTCTCCGATCGGCTCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACG
257 ATGCCTCTCCGATCGGCTCACCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
* * * * *
12909912 GAGTTCATTCCC-AGCTAAGATCAGACCAGATCGAGGGTTGCAGCAGCAGGATCGATAGCACGTG
1 GAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGTAGTAGGATCGACAGCACGT-
* * ** * * * ** * *
12909976 GGGGGGGACTTGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAATTGAACGCCTGTACG
65 -GAGGGAACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCGCCTGCACG
* * * * * *
12910041 CTCGTTTCCTGGGTTGGCTTAGGCAAATGAAGCTCATTCCATGTCTAA
129 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
12910089 ACATACGAAG
Statistics
Matches: 421, Mismatches: 66, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
316 108 0.26
317 309 0.73
318 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (316 bp):
GAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGTAGTAGGATCGACAGCACGTG
AGGGAACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCGCCTGCACGCC
CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAAGG
TTATGGCAACGGGATCGACAACACATAGAGGGGGACCAGGCCGATCCCCGACTTACGCATTATGC
CTCTCCGATCGGCTCACCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
Found at i:12910464 original size:26 final size:26
Alignment explanation
Indices: 12910427--12910479 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12910417 GTTGACTTAG
12910427 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
12910453 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
12910479 G
1 G
12910480 ATCTGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:12916277 original size:159 final size:157
Alignment explanation
Indices: 12915982--12916681 Score: 485
Period size: 159 Copynumber: 4.3 Consensus size: 157
12915972 CCCAGTCTAA
* * * ** * * * * *
12915982 GCATATGGAGTTCATTCCCAGTCAAAGATCAAATCGGACCGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCACAGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCAGGAT-GGCA
** * * * * * * * *
12916047 GCACACAGGAGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCACC
65 GCACGTAGGGGGGACCGGGCTAATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTCAGCGCC
* *
12916112 CGCACGCCCATTTCGTGGGTTGGCTTAG
130 CACACGCTCATTTCGTGGGTTGGCTTAG
* * *
12916140 GCATAGGGAGTTCATTGCAC-GTCTAAGCCCCAACCAGACTGAGGGTTGTGGCAGCGGGACTGGC
1 GCATACGGAGTTCATT-CACAGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCAGGA-TGGC
* *
12916204 AGCACGTAGAGGGGGATCGGGCTAATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCG
64 AGCACGTAG-GGGGGACCGGGCTAATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTCAGCG
* * *
12916269 CCCACACGCTCGTTTCATGGGTTGACTTAG
128 CCCACACGCTCATTTCGTGGGTTGGCTTAG
* * * ***** * * *** * *
12916299 GCATACAGAGTTTATTCCCAGTCTAAGATTGGACTGGTCTGAGGGTTACAGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCACAGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCAGGAT-GGCA
* ** * * * *
12916364 GTACACAGGGGAGGACCGGGCTGATCCCAGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGC
65 GCACGTAGGGG-GGACCGGGCTAATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTCAGCGC
* *
12916429 CCTCATGCTCATTTCGTGGGTTGGCTTAG
129 CCACACGCTCATTTCGTGGGTTGGCTTAG
* ** * *
12916458 GCATA-GGAGTTCATTCCCAGTCTAAG-ATCAGATCGGACCGAGGGTTGCGGTAGCAAGACCAAC
1 GCATACGGAGTTCATTCACAGTCTAAGCCCCA-ACCGGACTGAGGGTT---GT-G---G-----C
* * * * * * *
12916521 AGCAGGATTGGCAGCACGTCGGGGGGGATCAGGCTAAT-CCTCGGCTTACCCATTTTGCCTCTTC
53 AGCAGGA-TGGCAGCACGT-AGGGGGGACCGGGCTAATCCCT-GGCTTGCGCATTCTGCCTCTCC
* * * *
12916585 GGTCGGC-CAAGCGCTCACACACTCGTTTCGTGGGTTGGCTTAG
115 GGCCGGCTC-AGCGCCCACACGCTCATTTCGTGGGTTGGCTTAG
* * *
12916628 GCATACGGAGTTCATTC-CATCTCTAAGCCCTAGCCGGACTGAGGGTTGTGGCAG
1 GCATACGGAGTTCATTCACA-GTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAG
12916682 TAGAACTGGC
Statistics
Matches: 414, Mismatches: 102, Indels: 51
0.73 0.18 0.09
Matches are distributed among these distances:
157 1 0.00
158 90 0.22
159 199 0.48
164 1 0.00
165 1 0.00
167 1 0.00
168 2 0.00
169 2 0.00
170 82 0.20
171 34 0.08
172 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCACAGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCAGGATGGCAG
CACGTAGGGGGGACCGGGCTAATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTCAGCGCCC
ACACGCTCATTTCGTGGGTTGGCTTAG
Found at i:12916672 original size:329 final size:317
Alignment explanation
Indices: 12916032--12916674 Score: 697
Period size: 329 Copynumber: 2.0 Consensus size: 317
12916022 GAGGGTTGTG
* *
12916032 GTAGCAGGATCGACAGCACACAGGAGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCT
1 GTAGCAGGATCGACAGCACACAGGAGGGACCGGGCCAATCCCAGACTTGCGCATTCTGCCTCTCC
* *
12916097 GGCCGGTTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTGCACGT
66 GGCCGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGT
* * * *
12916162 CTAAGCCCCAACCAGACTGAGGGTTGTGGCAGCGGGACTGGCAGCACGTAGAGGGGGATCGGGCT
131 CTAAGCACCAACCAGACCGAGGGTTGTGGCAGCAGGACTGGCAGCACGTAGAGGGGGATCAGGCT
* * *
12916227 AATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCACACGCTCGTTTCATGGGTT
196 AATCCCTGGCTTACCCATTATGCCTCTCCGGCCGGCTCAGCGCCCACACACTCGTTTCATGGGTT
* * * * * *
12916292 GACTTAGGCATACAGAGTTTATTCCCAGTCTAAGATTGGACTGGTCTGAGGGTTACA
261 GACTTAGGCATACAGAGTTCATTCCCACTCTAAGACTAGACCGGACTGAGGGTTACA
* * ** *
12916349 GTAGCAGGATCGACAGTACACAGGGGAGGACCGGGCTGATCCCAGGCTTGCGCATTCTGCCTCTC
1 GTAGCAGGATCGACAGCACACAGGAG-GGACCGGGCCAATCCCAGACTTGCGCATTCTGCCTCTC
** * * *
12916414 CGGCCGGCTGAGTGCCCTCATGCTCATTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCC-CA
65 CGGCCGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAC-
* * * * *
12916477 GTCTAAG-ATCAGATCGGACCGAGGGTTGCGGTAGCAAGACCAACAGCAGGATTGGCAGCACGTC
129 GTCTAAGCACCA-ACCAGACCGAGGGTT---GT-G---G-----CAGCAGGACTGGCAGCACGTA
* * * * *
12916541 GGGGGGGATCAGGCTAAT-CCTCGGCTTACCCATTTTGCCTCTTCGGTCGGC-CAAGCGCTCACA
181 GAGGGGGATCAGGCTAATCCCT-GGCTTACCCATTATGCCTCTCCGGCCGGCTC-AGCGCCCACA
* * * *
12916604 CACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATCTCTAAGCCCTAG-CCGGAC
244 CACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-CTCTAAG-ACTAGACCGGAC
12916667 TGAGGGTT
307 TGAGGGTT
12916675 GTGGCAGTAG
Statistics
Matches: 266, Mismatches: 41, Indels: 26
0.80 0.12 0.08
Matches are distributed among these distances:
316 3 0.01
317 54 0.20
318 76 0.29
320 2 0.01
321 1 0.00
324 1 0.00
328 7 0.03
329 120 0.45
330 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (317 bp):
GTAGCAGGATCGACAGCACACAGGAGGGACCGGGCCAATCCCAGACTTGCGCATTCTGCCTCTCC
GGCCGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGT
CTAAGCACCAACCAGACCGAGGGTTGTGGCAGCAGGACTGGCAGCACGTAGAGGGGGATCAGGCT
AATCCCTGGCTTACCCATTATGCCTCTCCGGCCGGCTCAGCGCCCACACACTCGTTTCATGGGTT
GACTTAGGCATACAGAGTTCATTCCCACTCTAAGACTAGACCGGACTGAGGGTTACA
Found at i:12916720 original size:171 final size:170
Alignment explanation
Indices: 12916440--12916753 Score: 364
Period size: 171 Copynumber: 1.8 Consensus size: 170
12916430 CTCATGCTCA
* * *
12916440 TTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTG
1 TTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCCACTCTAAGACCAGACCGGACCGAGGGTTG
* ** * * *
12916505 CGGTAGCAAGACCAACAGCAGGATTGGCAGCACGTCGGGGGGGATCAGGCTAATCCTCGGCTTAC
66 CGGCAGCAAGACCAACAGCAGGATCAGCAGCACGTAGAGGGGGATCAGGCTAATCCTCGACTTAC
*
12916570 CCATTTTGCCTCTTCGGTCGGCCAAGCGCTCACACACTCG
131 CCATTATGCCTCTTCGGTCGGCCAAGCGCTCACACACTCG
* *
12916610 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATCTCTAAGCCCTAG-CCGGACTGAGGG
1 TTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCCA-CTCTAAGACC-AGACCGGACCGAGGG
* * *** * * * *
12916673 TTGTGGCAG-TAGAACTGGCAGCGGGATCAGCAGCACGTAGAGGGGGATCGGGTTGATCCTCGAC
63 TTGCGGCAGCAAG-ACCAACAGCAGGATCAGCAGCACGTAGAGGGGGATCAGGCTAATCCTCGAC
* *
12916737 TTGCGCATTATGCCTCT
127 TTACCCATTATGCCTCT
12916754 CAGGCCGACC
Statistics
Matches: 117, Mismatches: 23, Indels: 7
0.80 0.16 0.05
Matches are distributed among these distances:
170 28 0.24
171 87 0.74
172 2 0.02
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (170 bp):
TTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCCACTCTAAGACCAGACCGGACCGAGGGTTG
CGGCAGCAAGACCAACAGCAGGATCAGCAGCACGTAGAGGGGGATCAGGCTAATCCTCGACTTAC
CCATTATGCCTCTTCGGTCGGCCAAGCGCTCACACACTCG
Found at i:12916842 original size:26 final size:26
Alignment explanation
Indices: 12916812--12916864 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12916802 GTTGACTTAG
12916812 GCATACGAAGTTCATCCCCACTCTAA
1 GCATACGAAGTTCATCCCCACTCTAA
* * *
12916838 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCACTCTAA
12916864 G
1 G
12916865 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCACTCTAA
Found at i:12917191 original size:26 final size:26
Alignment explanation
Indices: 12917155--12917207 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12917145 GTTGGCTTAG
12917155 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12917181 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12917207 G
1 G
12917208 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12918101 original size:158 final size:159
Alignment explanation
Indices: 12917868--12918228 Score: 404
Period size: 159 Copynumber: 2.3 Consensus size: 159
12917858 CACACGCTTG
* * * * **** ***
12917868 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATATAAGATTGAGCTGGATCGAGGGTC
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCCAGCCAAATCGAGGGTC
* * * * * *
12917933 GCGGCAGCAGGATCGGCAGCACGTAG-GGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCT
66 GCGGCAGCAGGACCGACAGCACGGAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCT
* *
12917997 CTTCGGCCGACTGAGCG-CTCGCACGCCCG
131 CTTCGGCCGACTCAGCGTC-CGCACGCCCA
** * *
12918026 TTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAAATCGAGGGT
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCCCCAGCCAAATCGAGGGT
* * *
12918090 TGTGGCAGCAGGACCGACAGCACGGAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCC
65 CGCGGCAGCAGGACCGACAGCACGGAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCC
** * * *
12918155 TCTTCGGTTGGCTCAGCGTCCGCATGCTCA
130 TCTTCGGCCGACTCAGCGTCCGCACGCCCA
12918185 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
12918229 TATTTTGAGC
Statistics
Matches: 166, Mismatches: 33, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
157 3 0.02
158 69 0.42
159 90 0.54
160 4 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCCAGCCAAATCGAGGGTC
GCGGCAGCAGGACCGACAGCACGGAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCT
CTTCGGCCGACTCAGCGTCCGCACGCCCA
Done.