Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 90 of 402
Found at i:12919421 original size:158 final size:158
Alignment explanation
Indices: 12919045--12919421 Score: 402
Period size: 158 Copynumber: 2.4 Consensus size: 158
12919035 GCCCGTTTTG
* ** * * ** *
12919045 TGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTCCGA
* * * *
12919109 CAGCGGGATCGGCAGCACGTAGAGGGGGATCGGGTCGATCCCCGGCTGGCGCATTATACCTCTTC
64 CAGCAGGATCGACAGCACATAGAGGGGGATCGGGTCGATCCCCGACTGGCGCATTATACCTCTTC
** * ** *
12919174 GGTCGGCTCAGTGCCCGCACGCTTGTTTCA
129 GACCGGCACAGCACCCGCACGCTCGTTTCA
* * * ** *
12919204 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTGAGATCGGATGGGACCGTGGGTTCCGAC
1 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTCCGAC
* * * * *
12919269 AGTAGGATCGACAGCACATAG-GGGGGA-CTGGGTCGGTCCCCGACTTGCGCATTCTGCCTC-TC
65 AGCAGGATCGACAGCACATAGAGGGGGATC-GGGTCGATCCCCGACTGGCGCATTATACCTCTTC
*
12919331 TGACCGGCAGAGCACCCGCACGCTCGTTTCA
129 -GACCGGCACAGCACCCGCACGCTCGTTTCA
12919362 TGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTT
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACCGAGGGTT
12919422 GTGGCAGCAG
Statistics
Matches: 177, Mismatches: 36, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
157 5 0.03
158 108 0.61
159 61 0.34
160 3 0.02
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.23
Consensus pattern (158 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTCCGACA
GCAGGATCGACAGCACATAGAGGGGGATCGGGTCGATCCCCGACTGGCGCATTATACCTCTTCGA
CCGGCACAGCACCCGCACGCTCGTTTCA
Found at i:12919577 original size:26 final size:26
Alignment explanation
Indices: 12919546--12919598 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12919536 GTTGACTTAG
*
12919546 GCATACGTAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
12919572 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12919598 G
1 G
12919599 ATCGAACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12919921 original size:26 final size:26
Alignment explanation
Indices: 12919892--12919941 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
12919882 GGCTTAGGCA
*
12919892 TACGGAGTTTATT-CCATGTCTAAGCG
1 TACGGAGTTCATTACCA-GTCTAAGCG
12919918 TACGGAGTTCATTACCAGTCTAAG
1 TACGGAGTTCATTACCAGTCTAAG
12919942 AGTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTACCAGTCTAAGCG
Found at i:12921136 original size:26 final size:26
Alignment explanation
Indices: 12921106--12921158 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12921096 TTTGACATAG
*
12921106 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
12921132 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12921158 G
1 G
12921159 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12921433 original size:159 final size:156
Alignment explanation
Indices: 12921169--12922531 Score: 513
Period size: 159 Copynumber: 8.5 Consensus size: 156
12921159 ATCGAATCGG
* * * * * * * * *
12921169 ACCGAGGTTTGTAGTAGTAGGATCGACAGCACGCAGGGGGGATCGTGCCGATCCCTGGCTTGCGC
1 ACCGAGGGTTGTGGCAGCAGGACCGACAGTACGCA-AGGGGATCGGGCCGATCCCCGGCTTGCGC
* * *
12921234 ATTCTGCCTCTCCGGGTGGCTGAGTGCCCGCATGCCCATTTTGTCGATTTGCTTAGGCATAGGGA
65 ATTCTGCCTCTCC-GGTGGCTGAGCGCCCGCACGCCCATTTCGTCGATTTGCTTAGGCATAGGGA
12921299 GTTCATTCCACGTCTAAGCCCTA-ACCGA
129 GTTCATTCCACGTCTAAGCCC-AGACCGA
* * *
12921327 ACCGAGGGTTGTGGCAGCGGGACCGGTAGCATGT-TG-AAGGGGATCGGGCCAATCCCCGGCTTG
1 ACCGAGGGTTGTGGCAGCAGGACC-G-A-CA-GTACGCAAGGGGATCGGGCCGATCCCCGGCTTG
* * * * * *
12921390 CGCATTATGCCTCTCCGGCTGGCTCAGCGTCTGCACACTCATTTCGTGCG--TTGACTTAGGCAT
62 CGCATTCTGCCTCTCCGG-TGGCTGAGCGCCCGCACGCCCATTTCGT-CGATTTG-CTTAGGCAT
* ** ** *
12921453 ACGGAGTTCATTCC-CAGTCTAAGATCAGATTGG
124 AGGGAGTTCATTCCAC-GTCTAAGCCCAGACCGA
* * * * * *
12921486 ATCGAGGGTTGTGGCAGCAGGATCGACAGTACGCAAGCTGGGACCGGGCCGGTCCCCGACTTACG
1 ACCGAGGGTTGTGGCAGCAGGACCGACAGTACGCAAG--GGGATCGGGCCGATCCCCGGCTTGCG
*
12921551 CATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCATTTCGT-GAGTTGGCTTAGGCATAGG
64 CATTCTGCCTCTCCGGT-GGCTGAGCGCCCGCACGCCCATTTCGTCGA-TTTGCTTAGGCATAGG
* * *
12921615 GAGTTCATTCCATGTCTAAGCACCAG-CAGG
127 GAGTTCATTCCACGTCTAAGC-CCAGACCGA
* * * * * ** ** *
12921645 ATCGACGATTGTGGCAGCGGGACCTG-CAGCACGCAGAGGGGGGCTGAGG-TAATCCCCGGCTTA
1 ACCGAGGGTTGTGGCAGCAGGACC-GACAGTACGCA-AGGGGATC-G-GGCCGATCCCCGGCTTG
* * * * * * * *
12921708 CGCATTCTGCCTCTCCGACG-GGTTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATA
62 CGCATTCTGCCTCTCCG--GTGGCTGAGCGCCCGCACGCCCATTTCGTCGATTTGCTTAGGCATA
* * * *
12921772 TGGAGTTCATTCCATGTCTAAGCCCCAG-TCGG
125 GGGAGTTCATTCCACGTCTAAG-CCCAGACCGA
* * * * *
12921804 ACCGAGGGTTGCGGCAGCAGGACCAGCAGCACGAATGGTAGCATGCAGGGGGGGACCAGGTCGAT
1 ACCGAGGGTTGTGGCAGCAGGA-C--C-G-AC--A--GTA-C--GCA--AGGGGATCGGGCCGAT
* * * ** * * * * * * * *
12921869 CCCCGGCTTGCGTATTCTACCTCTCTAGCCGGCTGAGCACCCGTACACTCATTTCATGGGTTGGC
52 CCCCGGCTTGCGCATTCTGCCTCTC-CGGTGGCTGAGCGCCCGCACGCCCATTTCGTCGATTTGC
* ** *
12921934 TTAGCCATACAGAGTTCATTCCATGTCTAAGCCCCAG-CC-A
116 TTAGGCATAGGGAGTTCATTCCACGTCTAAG-CCCAGACCGA
* * * **
12921974 GACCGAGGGTTGTGGCAGC-GGCACCGATAGCACGTAGAGAGGGATCGGGTTGATCCCCGGCTTG
1 -ACCGAGGGTTGTGGCAGCAGG-ACCGACAGTACGCA-AG-GGGATCGGGCCGATCCCCGGCTTG
* * * * * * * * * * **
12922038 TGCATTATGCTTCTCCGACTGGCTCAGTGCCCGAATGCTCGTTTCGT-GGGTTGACTTAGGCATA
62 CGCATTCTGCCTCTCCG-GTGGCTGAGCGCCCGCACGCCCATTTCGTCGATTTG-CTTAGGCATA
*** ** * *
12922102 CAAAGTTCATTCC-CAGTCTAAGATCAGATCGG
125 GGGAGTTCATTCCAC-GTCTAAGCCCAGACCGA
* * * * *** * * * * *
12922134 ACTGAGGGTTGCGGCAACAAGATTAACAGCAC-CTAAGGGGGGACCAGGTCGATCCTCGGCTTGC
1 ACCGAGGGTTGTGGCAGCAGGACCGACAGTACGC-AA--GGGGATCGGGCCGATCCCCGGCTTGC
* * *** * ** * *
12922198 GCATTCTGCCTCTCCGGTCGGCTGAGCGTCTGCACGCTTGTTTCAT-GGGTTGACTTAAGCATAC
63 GCATTCTGCCTCTCCGGT-GGCTGAGCGCCCGCACGCCCATTTCGTCGATTTG-CTTAGGCATAG
** **** *
12922262 AAAGTTCATTCCTA-GTCTAAGATTGGACCGG
126 GGAGTTCATTCC-ACGTCTAAGCCCAGACCGA
** * * * * * ** * *
12922293 ACCGAGGGTTACGGTAGCAGGATCGATAGCACGTAAGGGGGA-CTGGGTGGGTCCCCAGC-TGAC
1 ACCGAGGGTTGTGGCAGCAGGACCGACAGTACGCAA-GGGGATC-GGGCCGATCCCCGGCTTG-C
* ** * * * * * * *
12922356 GCATTCTGCCTCTCTGGCCAGCTGAGCGCCCGCATGTCCATTTCATGGGTTGGCTTAGGAATAGG
63 GCATTCTGCCTCTCCGG-TGGCTGAGCGCCCGCACGCCCATTTCGTCGATTTGCTTAGGCATAGG
* *
12922421 GAGTTCATTCCATGTCTAAGCCCCAG-TCGA
127 GAGTTCATTCCACGTCTAAG-CCCAGACCGA
* ** * * * * * * *
12922451 ACCGAGGGTTCTGGCAGTGGGACCGATAGCATGCAGAGGGGGACCGGGTCGATCCCCAGCTTGCA
1 ACCGAGGGTTGTGGCAGCAGGACCGACAGTACGCA-A-GGGGATCGGGCCGATCCCCGGCTTGCG
*
12922516 CATTATGCCCTCTCCG
64 CATTCTG-CCTCTCCG
12922532 ACCGGCTTAG
Statistics
Matches: 927, Mismatches: 209, Indels: 136
0.73 0.16 0.11
Matches are distributed among these distances:
155 2 0.00
156 3 0.00
157 9 0.01
158 149 0.16
159 595 0.64
160 29 0.03
161 5 0.01
162 5 0.01
164 2 0.00
166 2 0.00
167 1 0.00
168 3 0.00
169 1 0.00
170 5 0.01
171 109 0.12
172 7 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
ACCGAGGGTTGTGGCAGCAGGACCGACAGTACGCAAGGGGATCGGGCCGATCCCCGGCTTGCGCA
TTCTGCCTCTCCGGTGGCTGAGCGCCCGCACGCCCATTTCGTCGATTTGCTTAGGCATAGGGAGT
TCATTCCACGTCTAAGCCCAGACCGA
Found at i:12921584 original size:502 final size:500
Alignment explanation
Indices: 12920534--12921636 Score: 1159
Period size: 502 Copynumber: 2.2 Consensus size: 500
12920524 CACCCGTTTG
* * * * * * * * * *
12920534 ATCCCCGGCTTACGCATCCTACCTCTCTGGCCGGCTGAGCGTCCGTACGTTCGTATCGTGGGTTA
1 ATCCCCGACTTACGCATTCTGCCTCTCCGG-CGGCTGAGCGCCCGCACGCTCATTTCGT-GGTTG
* * * * **
12920599 ACTTAGGCATACAGAGTTCATCCCCAATCTATGCATACGAAGTTCATTCTGAATCTAAGATCAGA
64 ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGAAGTTCATTCCCAATCTAAGATCAGA
* * *
12920664 TCGGACTGAGGGCTGTGGCAGCAAAATCGACAGCACGCAGGGAGGATTGGGCCGATCCCCAGCTT
129 TCGGACCGAGGGCTGTAGCAGCAAAATCGACAGCACGCAGGGAGGATCGGGCCGATCCCCAGCTT
* * * *
12920729 GCGCATTCTGCCTCTCCGGTCGGATGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATA
194 GCGCATTCTGCCTCTCCGGTCGGATGAGCGCCCGCACGCCCATTTCATCGATTGGCTTAGGCATA
* * * * * * *
12920794 GGGAGTTCATTCCATGTCTAAGCCCAGCCGGACTGCGGGTTGTGGCAGTGGGATCGGCAGCACGT
259 GGGAGTTCATTCCACGTCTAAGCCCAACCGAACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGT
* * ** *
12920859 AGACGAGGATTGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGGCTCAGCGCCTGCAC
324 AGAAGAGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCTGCAC
* * * * *
12920924 GCTCATTTCATGGGTTGTCTTAGGCATACGAAGTTTATTCCCAGTCTAAGATTAGATTGGATAGA
389 ACTCATTTCATGCGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATTGGATAGA
* * *** *
12920989 GGGTTGTGGCAGCAGGACCAGCAGTAGGATCGACAGTGTATTTTGTAC
454 GGGTTGTGGCAGCAGGACCAGCAGTACGA-CGACAGTGGATCCGGGAC
*** * * * * * * *
12921037 AT-TTTGCCTTTC-CGATT-GGCCTCTCCGGCTGACTAAGCACCCGCACGCTCATTTCATGGTTT
1 ATCCCCGACTTACGC-ATTCTGCCTCTCCGGC-GGCTGAGCGCCCGCACGCTCATTTCGTGG-TT
* *
12921099 GACATAGGCATACGGAGTTCATCCCCAGTCTAAGCATATAG-AGTTCATTCCCAGTCTAAGATC-
63 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA-AGAAGTTCATTCCCAATCTAAGATCA
** * * ** * * **
12921162 GAATCGGACCGAGGTTTGTAGTAGTAGGATCGACAGCACGCAGGGGGGATCGTGCCGATCCCTGG
127 G-ATCGGACCGAGGGCTGTAGCAGCAAAATCGACAGCACGCAGGGAGGATCGGGCCGATCCCCAG
* * * ** *
12921227 CTTGCGCATTCTGCCTCTCCGGGT-GGCTGAGTGCCCGCATGCCCATTTTGTCGATTTGCTTAGG
191 CTTGCGCATTCTGCCTCTCC-GGTCGGATGAGCGCCCGCACGCCCATTTCATCGATTGGCTTAGG
*
12921291 CATAGGGAGTTCATTCCACGTCTAAGCCCTAACCGAACCGAGGGTTGTGGCAGCGGGACCGGTAG
255 CATAGGGAGTTCATTCCACGTCTAAGCCC-AACCGAACCGAGGGTTGTGGCAGCGGGACCGGCAG
* * * * *
12921356 CATGTTGAAGGGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGCGTC
319 CACGTAGAAGAGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCC
* *
12921421 TGCACACTCATTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGG
384 TGCACACTCATTTCATGCGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATTGG
* * *
12921486 ATCGAGGGTTGTGGCAGCAGGATC-GACAGTACG-C-A-AGCTGGGA-CCGGGCC
449 ATAGAGGGTTGTGGCAGCAGGACCAG-CAGTACGACGACAG-T-GGATCCGGGAC
* *
12921536 GGTCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCATTTCGTGAGTT
1 -ATCCCCGACTTACGCATTCTGCCTCTCCGG-CGGCTGAGCGCCCGCACGCTCATTTCGTG-GTT
* * *
12921601 GGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGCA
63 GACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCA
12921637 CCAGCAGGAT
Statistics
Matches: 483, Mismatches: 100, Indels: 35
0.78 0.16 0.06
Matches are distributed among these distances:
498 2 0.00
499 4 0.01
500 8 0.02
501 221 0.46
502 244 0.51
503 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (500 bp):
ATCCCCGACTTACGCATTCTGCCTCTCCGGCGGCTGAGCGCCCGCACGCTCATTTCGTGGTTGAC
TTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGAAGTTCATTCCCAATCTAAGATCAGATC
GGACCGAGGGCTGTAGCAGCAAAATCGACAGCACGCAGGGAGGATCGGGCCGATCCCCAGCTTGC
GCATTCTGCCTCTCCGGTCGGATGAGCGCCCGCACGCCCATTTCATCGATTGGCTTAGGCATAGG
GAGTTCATTCCACGTCTAAGCCCAACCGAACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGTAG
AAGAGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCTGCACAC
TCATTTCATGCGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATTGGATAGAGG
GTTGTGGCAGCAGGACCAGCAGTACGACGACAGTGGATCCGGGAC
Found at i:12922032 original size:330 final size:315
Alignment explanation
Indices: 12921217--12922591 Score: 863
Period size: 318 Copynumber: 4.3 Consensus size: 315
12921207 GGGATCGTGC
* * * ** * * * ** * *
12921217 CGATCCCTGGCTTGCGCATTCTGCCTCTCCGGGTGGCTGAGTGCCCGCATGCCCATTTTGTCGAT
1 CGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGT
* ** * *
12921282 TTGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGC-CCTAACC-GAACCGAGGGTTGTGGCAGC
66 TGGCTTA-GCATACAGAGTTCATTCCATGTCTAAGCACC-AGCCAG-ACCGAGGGTTGTGGCAGC
* * * *** * * *
12921345 GGGACCGGTAGCATGTTGAAGGGGA-TCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGGC
128 -GGACCGATAGCACGTAG-AGGGGACT-GGGTTGATCCCCGGCTTACGCATTCTGCCTCTCCGAC
* * * * * * *
12921409 TGGCTCAGCGTCTGCACA--CTCATTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCCA-GT
190 CGGCTGAGCG-C-CCACATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGT
** * * * * * * * * ** *
12921471 CTAAG-ATCAGATTGGATCGAGGGTTGTGGCAGCAGGATCGACAGTACGC-AAGCTGGGACCGGG
252 CTAAGCCCCAG-TCGGACCGAGGGTTGCGGCAACAAGACCAACAGCAC-CTAAGGGGGGACCAGG
*
12921534 C
315 T
* * * * * * * * *
12921535 CGGTCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCATTTCGTGAGT
1 CGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGT
** * * *
12921600 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAG-CAGGATCGACGATTGTGGCAGCG
66 TGGCTTA-GCATACAGAGTTCATTCCATGTCTAAGCACCAGCCA-GACCGAGGGTTGTGGCAGC-
* * * *
12921664 GGACCTG-CAGCACGCAGAGGGGGGCTGAGG-TAATCCCCGGCTTACGCATTCTGCCTCTCCGAC
128 GGACC-GATAGCACGTAGA-GGGGACTG-GGTTGATCCCCGGCTTACGCATTCTGCCTCTCCGAC
* * * *
12921727 GGGTTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTA
190 CGGCTGAGCGCCCACATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * * *
12921792 AGCCCCAGTCGGACCGAGGGTTGCGGCAGCAGGACCAGCAGCACGAATGGTAGCATGCAGGGGGG
255 AGCCCCAGTCGGACCGAGGGTTGCGGCAACAAGACCAACAGCAC---------C-T--AAGGGGG
12921857 GACCAGGT
308 GACCAGGT
* * * * *
12921865 CGATCCCCGGCTTGCGTATTCTACCTCTCTAGCCGGCTGAGCACCCGTACACTCATTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGT
*
12921930 TGGCTTAGCCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGG
66 TGGCTTAG-CATACAGAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGGTTGTGGCAGCGG
** * * *
12921995 CACCGATAGCACGTAGAGAGGGA-TCGGGTTGATCCCCGGCTTGTGCATTATGCTTCTCCGACTG
130 -ACCGATAGCACGTAGAG-GGGACT-GGGTTGATCCCCGGCTTACGCATTCTGCCTCTCCGACCG
* * * * **
12922059 GCTCAGTGCCCGA-ATGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCA-GTCTA
192 GCTGAGCGCCC-ACATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
** * **
12922122 AG-ATCAGATCGGACTGAGGGTTGCGGCAACAAGATTAACAGCACCTAAGGGGGGACCAGGT
255 AGCCCCAG-TCGGACCGAGGGTTGCGGCAACAAGACCAACAGCACCTAAGGGGGGACCAGGT
* * * * * * **
12922183 CGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGTCTGCACGCTTGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGT
* * *** * ** *
12922248 TGACTTAAGCATACAAAGTTCATTCC-TAGTCTAAG-ATTGGACCGGACCGAGGGTTACGGTAGC
66 TGGCTT-AGCATACAGAGTTCATTCCAT-GTCTAAGCACCAG-CCAGACCGAGGGTTGTGGCAGC
* * * * * * *
12922311 AGGATCGATAGCACGTA-AGGGGGACTGGGTGGGTCCCCAGCTGACGCATTCTGCCTCTCTGGCC
128 -GGACCGATAGCACGTAGA-GGGGACTGGGTTGATCCCCGGCTTACGCATTCTGCCTCTCCGACC
* * * * *
12922375 AGCTGAGCGCCCGCATG-TCCATTTCATGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCTA
191 GGCTGAGCGCCCACATGCT-CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* **** * * * *
12922439 AGCCCCAGTCGAACCGAGGGTT-CTGGCAGTGGGACCGATAGCA--TGCAGAGGGGGACCGGGT
255 AGCCCCAGTCGGACCGAGGGTTGC-GGCAACAAGACCAACAGCACCT-AAG-GGGGGACCAGGT
* * * * * * *
12922500 CGATCCCCAGCTTGCACATTATGCCCTCTCC-GACCGGCTTAGCGCCCGAACGCTCGTTTCATGG
1 CGATCCCCGGCTTGCGCATTCT-ACCTCTCCAG-CCGGCTGAGCGCCCGCACGCTCATTTCATGG
* *
12922564 GTTGACTTAGGCATA-TGAAGTTCATTCC
64 GTTGGCTTA-GCATACAG-AGTTCATTCC
12922592 CAATCTAAGA
Statistics
Matches: 837, Mismatches: 170, Indels: 100
0.76 0.15 0.09
Matches are distributed among these distances:
315 1 0.00
316 11 0.01
317 142 0.17
318 410 0.49
319 14 0.02
320 1 0.00
321 1 0.00
326 2 0.00
329 11 0.01
330 238 0.28
331 6 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (315 bp):
CGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGT
TGGCTTAGCATACAGAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGGTTGTGGCAGCGGA
CCGATAGCACGTAGAGGGGACTGGGTTGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTG
AGCGCCCACATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
AGTCGGACCGAGGGTTGCGGCAACAAGACCAACAGCACCTAAGGGGGGACCAGGT
Found at i:12922775 original size:26 final size:26
Alignment explanation
Indices: 12922745--12922797 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
12922735 GTTGACTTAG
*
12922745 GCATACGA-AGTTCATCCCCAGTCTAA
1 GCATA-GAGAGTTCATCCCCAATCTAA
* *
12922771 GCATATAGAGTTCATTCCCAATCTAA
1 GCATAGAGAGTTCATCCCCAATCTAA
12922797 G
1 G
12922798 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATAGAGAGTTCATCCCCAATCTAA
Found at i:12923060 original size:159 final size:158
Alignment explanation
Indices: 12922823--12923115 Score: 394
Period size: 159 Copynumber: 1.8 Consensus size: 158
12922813 GGCTTGCGGT
* *
12922823 AGCAGGATCGGTAGCACGCAAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGA
1 AGCAGGATCGGTAGCACACAAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTCTACCTCTCCGA
* * * *
12922888 CCGACTGAACGCCCGTACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
66 CCGACTGAACGCCCGCACACCCGTTTCATGAGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCT
12922953 AAGCCCCAGCTGGACTGAGGGTTGTGGC
131 AAGCCCCAGCTGGACTGAGGGTTGTGGC
*
12922981 AGCAGGA-CTGGTAGCACACAGAGGGGGATC-GAGCCGATCC-CTGGCTTGCGCATTCTACCTCT
1 AGCAGGATC-GGTAGCACACA-AGGGGGACCAG-GCCGATCCTC-GGCTTGCGCATTCTACCTCT
* * * * * * **
12923043 CCGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGAGTTGGCTTAGGCATTTAGAGTTCATTCCAT
62 CCGACCGACTGAACGCCCGCACACCCGTTTCATGAGTTGGCTTAGGCATAGAGAGTTCATTCCAT
12923108 GTCTAAGC
127 GTCTAAGC
12923116 ATACGGAGTT
Statistics
Matches: 116, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
157 1 0.01
158 19 0.16
159 96 0.83
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (158 bp):
AGCAGGATCGGTAGCACACAAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTCTACCTCTCCGA
CCGACTGAACGCCCGCACACCCGTTTCATGAGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCT
AAGCCCCAGCTGGACTGAGGGTTGTGGC
Found at i:12924081 original size:159 final size:158
Alignment explanation
Indices: 12923760--12924103 Score: 361
Period size: 159 Copynumber: 2.2 Consensus size: 158
12923750 CCCAGTCTAA
* * * ** * * *
12923760 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTGTAGCAGCAGGATCGACA
1 GCATACGGAGTTAATTCCGAGTCTAAGCCCCAGCCGGACCAAGGGTTGTAGCAGCAGGACCGACA
* * * * *
12923825 GCACCCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGACTGACCGCC
66 GCACCCAGGGAGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGACTCAACGCC
* *
12923890 CGCACGCCCGTTTCATGGGTTGGCTTAG
131 CACACGCCCGTTTCATGGGTTGACTTAG
* * * *
12923918 GCATAGGGAGTTAATTCC-ATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACC-AG
1 GCATACGGAGTTAATTCCGA-GTCTAAGCCCCAGCCGGACCAAGGGTTGTAGCAGCAGGACCGA-
* * * *
12923981 CAGCACGCAGAGGAGGACCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCCTG-CTCAA
64 CAGCACCCAG-GGAGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGG-CTGACTCAA
* ** ** *
12924045 TGCCCACACGCTTGTTTTGTGGGTTGACTTTG
127 CGCCCACACGCCCGTTTCATGGGTTGACTTAG
*
12924077 GCATACGGAGTTCATTCCGAGTCTAAG
1 GCATACGGAGTTAATTCCGAGTCTAAG
12924104 ATCGGACTGG
Statistics
Matches: 152, Mismatches: 29, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 58 0.38
159 88 0.58
160 4 0.03
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTAATTCCGAGTCTAAGCCCCAGCCGGACCAAGGGTTGTAGCAGCAGGACCGACA
GCACCCAGGGAGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGACTCAACGCC
CACACGCCCGTTTCATGGGTTGACTTAG
Found at i:12924238 original size:158 final size:156
Alignment explanation
Indices: 12923760--12924261 Score: 501
Period size: 158 Copynumber: 3.2 Consensus size: 156
12923750 CCCAGTCTAA
* * *
12923760 GCATATGGAGTTCATTCCCA-GTCTAAGATCGAACCGGACCAAGGGTTGTAGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * *
12923824 AGCACCCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGACTGACCGC
65 AGCACGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGCCTGACTGA--GC
* *
12923889 CCGCACGCCCGTTTCATGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
12923918 GCATAGGGAGTTAATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGA-CCAGC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGATCGA-C
* * * * * *
12923982 AGCACGCAGAGGAGGACCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCCTG-CTCAAT
65 AGCACGCAG-GGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTC-TCCGCCTGACT-GA-
* * * * *
12924046 GCCCACACGCTTGTTTTGTGGGTTGACTTTG
126 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
12924077 GCATACGGAGTTCATTCCGA-GTCTAAGATCGGACTGGATCGAGGGTTGCGGTAGTAGGATCGAC
1 GCATACGGAGTTCATTCC-ATGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
12924141 AGTATGCAGGGGGGATCGAGCC-AGTCCTCGGCTTGCTCATTCTGCCTCTCCGCCCGACTGAGCA
65 AGCACGCAGGGGGGATCGGGCCGA-TCCTCGGCTTGCGCATTCTGCCTCTCCGCCTGACTGAGC-
12924205 CCTGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CC-GCACGCTCGTTTCGTGGGTTGGCTTAG
* *
12924235 GCATACGAAGTTGATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12924262 CATACGGAGT
Statistics
Matches: 273, Mismatches: 59, Indels: 24
0.77 0.17 0.07
Matches are distributed among these distances:
156 2 0.01
157 16 0.06
158 133 0.49
159 112 0.41
160 10 0.04
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGCCTGACTGAGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12925726 original size:158 final size:157
Alignment explanation
Indices: 12925291--12925749 Score: 447
Period size: 159 Copynumber: 2.9 Consensus size: 157
12925281 TAGGATCGAT
* * *
12925291 GGTTGTGATAGCAGGATCGACAGCTCGCAGGGGGGACCAGGCCGATCCCCGACTTAT-GCATTTT
1 GGTTGTGATAGCAGGATCGACAGCACGTAGGGGGGA-CAGGCCGATCCTCGACTT-TCGCATTTT
* * * * * * *
12925355 GCATCTCCGGCCGGCTGAGCGCCCGCACACTTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
64 GCCTCTCTGGCCGGATGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
*** * **
12925420 TTCCATGTCTATGCCCCAGTCGAACCGAG
129 TTCCATGTCTAAAACCAACCCGAACCGAG
* * * * * * * *
12925449 GGTTGTGGTAGCGGGACCGACAGCACGTAGAGGGGGACCGGGCCAATCCTCGACTTGCGTATTAT
1 GGTTGTGATAGCAGGATCGACAGCACGTAG-GGGGGA-CAGGCCGATCCTCGACTTTCGCATTTT
* * * * * *
12925514 ACCTCTCTAGCTGGATCAGCACACGCACGCTCATTTCATGGGTTGAG-TTAGGCATACGGAGTTC
64 GCCTCTCTGGCCGGATGAGCACCCGCACGCTCGTTTCATGGGTTG-GCTTAGGCATACGGAGTTC
* **
12925578 ATTCCCA-GTCTAAAATCAACCCGAATTGAG
128 ATT-CCATGTCTAAAACCAACCCGAACCGAG
* * * *
12925608 GGTTATGATAGCAGGATCGACAGCACGTAGGGGGGACTGCGTCGGTCCTCGACTTTCGCATTTTG
1 GGTTGTGATAGCAGGATCGACAGCACGTAGGGGGGACAG-GCCGATCCTCGACTTTCGCATTTTG
* * * * * *
12925673 CCTCTCTGGCCGGTTGAGCACCCGCACGCACGTTTTATGGGTTGGCTTGGGCATGCAGAGTTCAT
65 CCTCTCTGGCCGGATGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
12925738 TCCATGTCTAAA
130 TCCATGTCTAAA
12925750 CATACGTAGT
Statistics
Matches: 238, Mismatches: 56, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
157 6 0.03
158 109 0.46
159 119 0.50
160 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
GGTTGTGATAGCAGGATCGACAGCACGTAGGGGGGACAGGCCGATCCTCGACTTTCGCATTTTGC
CTCTCTGGCCGGATGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
CCATGTCTAAAACCAACCCGAACCGAG
Found at i:12926057 original size:13 final size:13
Alignment explanation
Indices: 12926039--12926065 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
12926029 TGCGCATTAT
12926039 GCCTCTCCGACCG
1 GCCTCTCCGACCG
12926052 GCCTCTCCGACCG
1 GCCTCTCCGACCG
12926065 G
1 G
12926066 TTGAGCGCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.52, G:0.26, T:0.15
Consensus pattern (13 bp):
GCCTCTCCGACCG
Found at i:12926133 original size:26 final size:26
Alignment explanation
Indices: 12926103--12926155 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12926093 GTTGACTTAG
* *
12926103 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTACATTCCCAGTCTAA
*
12926129 GCATACGAAGTACATTTCCAGTCTAA
1 GCATACGAAGTACATTCCCAGTCTAA
12926155 G
1 G
12926156 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTACATTCCCAGTCTAA
Found at i:12926375 original size:197 final size:196
Alignment explanation
Indices: 12926080--12926438 Score: 492
Period size: 197 Copynumber: 1.8 Consensus size: 196
12926070 GCGCCCGCAT
*
12926080 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTACATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTACATT
* * * *
12926145 TCCAGTCTAAGATCGGACCGGATCGAAGGTTGCGATAGCAGGACCAGCAGCACGTAGGGGGGACC
66 TCCAGTCTAAGATCAGACCAGATCGAAGGTTGCGATAGCAAGACCAGCAGAACGTA-GGGGGACC
*
12926210 GAGTTGATCCTCGGCTTGTGCATTCTACCTCTCCAGTCGACCTCTCCGGCAGGCTGAGCGTTCAC
130 GAGTCGATCCTCGGCTTGTGCATTCTACCTCTCCAGTCGACCTCTCCGGCAGGCTGAGCGTTCAC
12926275 AC
195 AC
*
12926277 GCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCA-TCCCTAGTCTAAGCATAC-AGAGTTCA
1 GCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCC-AGTCTAAGCATACGA-AGTACA
* * * * * *
12926340 -TTCTCAGTCTAATATCAGACCAGA-CTGAGGGTTGCGGTAGCAAGATCGGTAGAACGTAGGGGG
64 TTTC-CAGTCTAAGATCAGACCAGATC-GAAGGTTGCGATAGCAAGACCAGCAGAACGTAGGGGG
* * * *
12926403 ACTGGGTCGATCTTCGGCTTGTGCATTCTGCCTCTC
127 ACCGAGTCGATCCTCGGCTTGTGCATTCTACCTCTC
12926439 TGATCGGTTG
Statistics
Matches: 141, Mismatches: 17, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
196 45 0.32
197 96 0.68
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.26
Consensus pattern (196 bp):
GCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTACATT
TCCAGTCTAAGATCAGACCAGATCGAAGGTTGCGATAGCAAGACCAGCAGAACGTAGGGGGACCG
AGTCGATCCTCGGCTTGTGCATTCTACCTCTCCAGTCGACCTCTCCGGCAGGCTGAGCGTTCACA
C
Found at i:12926853 original size:26 final size:26
Alignment explanation
Indices: 12926797--12926853 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
12926787 GTGGGTTGGC
* *
12926797 TTAAGCATACGGAGTTTATTCTATGT
1 TTAAGCATACAGAGTTCATTCTATGT
*
12926823 CTAAGCATACAGAGTTCATTCCTA-GT
1 TTAAGCATACAGAGTTCATT-CTATGT
12926849 TTAAG
1 TTAAG
12926854 ACCAGACCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.37
Consensus pattern (26 bp):
TTAAGCATACAGAGTTCATTCTATGT
Found at i:12928824 original size:26 final size:26
Alignment explanation
Indices: 12928784--12928837 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
12928774 TGGGTTGACT
*
12928784 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGAAGTTCATCCCCAGTC
*
12928810 TAGGCATACGAAGTTCATTCCCAGTC
1 TAGGCATACGAAGTTCATCCCCAGTC
12928836 TA
1 TA
12928838 AGATCGGACG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TAGGCATACGAAGTTCATCCCCAGTC
Found at i:12929340 original size:26 final size:26
Alignment explanation
Indices: 12929289--12929341 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12929279 GTTGGCTTAG
* *
12929289 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGCCTAA
12929315 GCATACGAAGTTCATT-CATAGCCTAA
1 GCATACGAAGTTCATTCCAT-GCCTAA
12929341 G
1 G
12929342 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGCCTAA
Found at i:12935912 original size:26 final size:26
Alignment explanation
Indices: 12935876--12935928 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12935866 GTTGACTTAG
*
12935876 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12935902 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12935928 G
1 G
12935929 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12936210 original size:158 final size:158
Alignment explanation
Indices: 12935902--12936402 Score: 401
Period size: 158 Copynumber: 3.2 Consensus size: 158
12935892 CCCAGTCTAA
* * * * ** * * *
12935902 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATC-GAACCGAGGATTGCAACAGTAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGATCAG-ACCGAGGGTTACGGCAGCAGGACCGA
* * * * * * * * *
12935965 CAGCACGC-AGGAGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGC-CAAG
64 CAGCACACAAGG-GGGACCAGGCCGATCCCTGGCTTGCACATTATGCCTCTCCGACCAGCTC-AG
** *
12936028 TGCCCGCACGC-CTATTTCGTGGGTTGGCTTAG
127 CACCCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * * * * **
12936060 GCATAGGGAGTTCATTCCATGTCTAGGCCCCAGCT-AGACTGAGGGTTGTGGCAGC-GTGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGATCAGACCGAGGGTTACGGCAGCAG-GACCGA
** ****
12936123 CAGCACACAGAGGGGGACCAGGCCGAT-CCTCGGCTTGTGCA-TATGCCTCTCCGGTTGGCTCAG
64 CAGCACACA-AGGGGGACCAGGCCGATCCCT-GGCTTGCACATTATGCCTCTCCGACCAGCTCAG
* * *
12936186 CGCCCGCATGCTCGTTTCGTGGGTTGACTTAG
127 CACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
12936218 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGATCAGACCGAGGGTTACGGCAGCAGGACCGAC
** * * * * *
12936282 AGCACGTAAGGGGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGACCAGTTGAGCAC
65 AGCACACAAGGGGGACCAGGCCGATCCCTGGCTTGCACATTATGCCTCTCCGACCAGCTCAGCAC
*
12936347 CCGCACGCTCGTTTCGTGGGTTGGCGTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
12936376 GCATACGGAGTTCACTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12936403 CATACAGAGT
Statistics
Matches: 273, Mismatches: 55, Indels: 30
0.76 0.15 0.08
Matches are distributed among these distances:
157 34 0.12
158 206 0.75
159 30 0.11
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGATCAGACCGAGGGTTACGGCAGCAGGACCGACA
GCACACAAGGGGGACCAGGCCGATCCCTGGCTTGCACATTATGCCTCTCCGACCAGCTCAGCACC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12936412 original size:26 final size:26
Alignment explanation
Indices: 12936376--12936428 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12936366 GTTGGCGTAG
*
12936376 GCATACGGAGTTCACTCC-ATGTCTAA
1 GCATACAGAGTTCACTCCTA-GTCTAA
*
12936402 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCACTCCTAGTCTAA
12936428 G
1 G
12936429 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCTAGTCTAA
Found at i:12936602 original size:26 final size:26
Alignment explanation
Indices: 12936572--12936624 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12936562 GTTGGCTTAG
*
12936572 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12936598 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12936624 G
1 G
12936625 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12936602 original size:196 final size:196
Alignment explanation
Indices: 12936268--12936728 Score: 679
Period size: 196 Copynumber: 2.4 Consensus size: 196
12936258 GAGGGTTACG
* * * * *
12936268 GCAGCAGGATCGACAGCACGTAAGGGGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCC
1 GCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGACTTGCACATTCTACCTCTCC
* *
12936333 GACCAGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCGTAGGCATACGGAGTTCACTCCATGT
66 GGCCAGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCGTAGGCATACGGAGTTCACTCCATGT
* * *
12936398 CTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCGATAGCAGGACC
131 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGACC
12936463 A
196 A
* *
12936464 GCAGCAGGATCGGCAGCACGTAGGGGGGACCAGGCCGATCCCCGACTTGCACATTCTACCTCTCC
1 GCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGACTTGCACATTCTACCTCTCC
* * * * * *
12936529 GGTCGGTTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 GGCCAGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCGTAGGCATACGGAGTTCACTCCATGT
** * * *
12936594 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGACC
131 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGACC
12936659 A
196 A
* * * *
12936660 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCGACTTACGCATTCTACCTCTCC
1 GCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGACTTGCACATTCTACCTCTCC
12936725 GGCC
66 GGCC
12936729 GACTAAGCGC
Statistics
Matches: 235, Mismatches: 30, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
196 235 1.00
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.20
Consensus pattern (196 bp):
GCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGACTTGCACATTCTACCTCTCC
GGCCAGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCGTAGGCATACGGAGTTCACTCCATGT
CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGACC
A
Found at i:12936972 original size:26 final size:26
Alignment explanation
Indices: 12936943--12936995 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12936933 GTTGACTTAG
12936943 GCATACGAAGTTC-TTCCCCAATCTAA
1 GCATACGAAGTTCATT-CCCAATCTAA
* *
12936969 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
12936995 G
1 G
12936996 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:12937263 original size:158 final size:160
Alignment explanation
Indices: 12937032--12937398 Score: 454
Period size: 158 Copynumber: 2.3 Consensus size: 160
12937022 ATAGGATTGT
* ** * * *
12937032 AGCACGCAG-GGGGGACTGGGCCAAT-CCCGAGCTTGTGCATTCTGCCTCTCTGACCGACTGAGC
1 AGCACGTAGAGGGGGACCAGGCCGATCCCCG-GCTTGCGCATTCTGCCTCTCCGACCGACTGAGC
* *
12937095 ACCCTGCATGCCCATTTCATGGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTAAGCCACAG
65 ACCCTGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCACAG
* ** **
12937160 CCGGACCGAGGGTTGTGGCAGTGGGATCGGC
130 CCAGACCGAGGGTTGTGGCAACGGGATCAAC
* * ** * ** **
12937191 AGCACGTCG-GGGGGACCGGGTTGATGCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGTG
1 AGCACGTAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCA
* *
12937255 CCC-GCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGC
66 CCCTGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCACAGC
*
12937319 CAGACCGAGGGTTGTGGTAACGGGATCAAC
131 CAGACCGAGGGTTGTGGCAACGGGATCAAC
* *
12937349 AGCACGTAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCT
1 AGCACGTAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCT
12937399 TCGGTCAGCT
Statistics
Matches: 177, Mismatches: 29, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
158 89 0.50
159 84 0.47
160 4 0.02
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.22
Consensus pattern (160 bp):
AGCACGTAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCA
CCCTGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCACAGC
CAGACCGAGGGTTGTGGCAACGGGATCAAC
Found at i:12937470 original size:159 final size:158
Alignment explanation
Indices: 12937032--12937628 Score: 384
Period size: 159 Copynumber: 3.8 Consensus size: 158
12937022 ATAGGATTGT
* ** * * * * *
12937032 AGCACGCAGGGGGGACTGGGCCAAT-CCCGAGCTTGTGCATTCTGCCTCTCTGACC-GACTGAGC
1 AGCACGTAGGGGGGACCAGGCCGATCCCCGA-CTTGCGCATTATGCCTCTCCGACCAG-CTCAGC
* ** ** * **
12937095 ACCCTGCATGCCCATTTCATGGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTAAGCCACAG
64 GCCC-GCACACCCATTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCACAG
* ** **
12937160 CCGGACCGAGGGTTGTGGCAGTGGGATCGGC
128 CCAGACCGAGGGTTGTGGCAACGGGATCAAC
* * ** * * * * * * *
12937191 AGCACGTCGGGGGGACCGGGTTGATGCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGTGC
1 AGCACGTAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCTCAGCGC
** * ** ** * *
12937256 CCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCA
66 CCGCACACCCATTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCACAGCCA
*
12937321 GACCGAGGGTTGTGGTAACGGGATCAAC
131 GACCGAGGGTTGTGGCAACGGGATCAAC
* **
12937349 AGCACGTAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGTCAGCTCAGCG
1 AGCACGTAG-GGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCTCAGCG
* * * **
12937414 CCCGCACACTCATTTCGTGGGTTAACTTATGCATACAGAGTTCATTCCCA-GTCTAAG--ATTGG
65 CCCGCACACCCATTTCATGGGTTAACTTAGGCATACAGAGTTCATT-CCATGTCTAAGCCA-CAG
* * * * **
12937476 ACCGGACCGAGGGTTGCGGTAGCAAGATCAAC
128 -CCAGACCGAGGGTTGTGGCAACGGGATCAAC
* * * * * * * *
12937508 AGCACGCA-GGGGGATCGGGCTGATCCCC-AGCTTGCGCATTCTGCCTCT-CTAGCCAGCTGATC
1 AGCACGTAGGGGGGACCAGGCCGATCCCCGA-CTTGCGCATTATGCCTCTCCGA-CCAGCTCAGC
* * * * * * * * *
12937570 ACCCGCACGCTCGTTTCGTAGTTTAGCTTAGGCATAC-GATGTTCATTCCACGTCTAAGC
64 GCCCGCACACCCATTTCATGGGTTAACTTAGGCATACAGA-GTTCATTCCATGTCTAAGC
12937629 ATATGGACTT
Statistics
Matches: 355, Mismatches: 72, Indels: 23
0.79 0.16 0.05
Matches are distributed among these distances:
156 7 0.02
157 85 0.24
158 90 0.25
159 165 0.46
160 8 0.02
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (158 bp):
AGCACGTAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCTCAGCGC
CCGCACACCCATTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCACAGCCA
GACCGAGGGTTGTGGCAACGGGATCAAC
Found at i:12937605 original size:157 final size:160
Alignment explanation
Indices: 12937321--12937636 Score: 358
Period size: 157 Copynumber: 2.0 Consensus size: 160
12937311 GCCCCAGCCA
* ** *
12937321 GACCGAGGGTTGTGGTAACGGGATCAACAGCACGTAGAGGGGGACCAGGCCGATCCCCGACTTGC
1 GACCGAGGGTTGCGGTAACAAGATCAACAGCACG-ACAGGGGGACCAGGCCGATCCCCGACTTGC
* * * * *
12937386 GCATTATGCCTCTTCGGTCAGCTCAGCGCCCGCACACTCATTTCGTGGGTTAACTTATGCATACA
65 GCATTATGCCTCTTCAGCCAGCTCAGCACCCGCACACTCATTTCGTAGGTTAACTTAGGCATAC-
12937451 GA-GTTCATTCC-CAGTCTAAG-AT-TGGACCG
129 GATGTTCATTCCAC-GTCTAAGCATATGGACCG
* * * *
12937480 GACCGAGGGTTGCGGTAGCAAGATCAACAGCACG-CAGGGGGATCGGGCTGATCCCC-AGCTTGC
1 GACCGAGGGTTGCGGTAACAAGATCAACAGCACGACAGGGGGACCAGGCCGATCCCCGA-CTTGC
* * * * * * *
12937543 GCATTCTGCCTC-TCTAGCCAGCTGATCACCCGCACGCTCGTTTCGTAGTTTAGCTTAGGCATAC
65 GCATTATGCCTCTTC-AGCCAGCTCAGCACCCGCACACTCATTTCGTAGGTTAACTTAGGCATAC
12937607 GATGTTCATTCCACGTCTAAGCATATGGAC
129 GATGTTCATTCCACGTCTAAGCATATGGAC
12937637 TTCATTCCCA
Statistics
Matches: 131, Mismatches: 20, Indels: 12
0.80 0.12 0.07
Matches are distributed among these distances:
156 5 0.04
157 88 0.67
158 3 0.02
159 35 0.27
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (160 bp):
GACCGAGGGTTGCGGTAACAAGATCAACAGCACGACAGGGGGACCAGGCCGATCCCCGACTTGCG
CATTATGCCTCTTCAGCCAGCTCAGCACCCGCACACTCATTTCGTAGGTTAACTTAGGCATACGA
TGTTCATTCCACGTCTAAGCATATGGACCG
Found at i:12938240 original size:26 final size:26
Alignment explanation
Indices: 12938210--12938262 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12938200 GTTGACTTAG
*
12938210 GCATACGGAGTTCA-TCACCAGTCTAA
1 GCATACGAAGTTCATTC-CCAGTCTAA
12938236 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12938262 G
1 G
12938263 GTCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12938629 original size:158 final size:157
Alignment explanation
Indices: 12938236--12938633 Score: 415
Period size: 158 Copynumber: 2.5 Consensus size: 157
12938226 ACCAGTCTAA
** * * *
12938236 GCATACGAAGTTCATTCCCAGTCTAAGGTCGAACTGGACCGAGGGTTGCGGCTGTAGGATCGACA
1 GCATACG-AGTTCATTCCCAGTCTAACATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCGACA
** * * * * *
12938301 GCACGCAAAGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
65 GCACGCAGGGGGGATCGGGTAGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCACC
* *
12938366 CGCACGCCCGTTTCATGGGTTGGCTTAG
130 CGCACGCCAGTTTCATGGGTTGACTTAG
* * ** * * * * ** *
12938394 GCATAGGAGTTCATT-CCATGTGTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGTGGGGCCGGC
1 GCATACGAGTTCATTCCCA-GTCTAA-CATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCGAC
* * **
12938457 AGCATGCAGAGGGGGATCGGGCTAG-TCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTCAGC
64 AGCACGCAG-GGGGGATCGGG-TAGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGC
* * * *
12938521 ACCCGTACGCTAGTTTCGTGGGTTGACTTAT
127 ACCCGCACGCCAGTTTCATGGGTTGACTTAG
*
12938552 GCATACAGAGTTCATTCCCAGTCTAACATCGGACCGGACCGAGGGTTGCGACAGTAGGATCGACA
1 GCATAC-GAGTTCATTCCCAGTCTAACATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCGACA
12938617 GCACGCAGGGGGGATCG
65 GCACGCAGGGGGGATCG
12938634 AGTCAATCCC
Statistics
Matches: 188, Mismatches: 45, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
156 3 0.02
157 43 0.23
158 91 0.48
159 48 0.26
160 3 0.02
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (157 bp):
GCATACGAGTTCATTCCCAGTCTAACATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAG
CACGCAGGGGGGATCGGGTAGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCACCC
GCACGCCAGTTTCATGGGTTGACTTAG
Found at i:12938644 original size:158 final size:156
Alignment explanation
Indices: 12938236--12938727 Score: 409
Period size: 158 Copynumber: 3.1 Consensus size: 156
12938226 ACCAGTCTAA
** * * *
12938236 GCATACGAAGTTCATTCCCAGTCTAAGGTCGAACTGGACCGAGGGTTGCGGCTGTAGGATCGACA
1 GCATACG-AGTTCATTCCCAGTCTAACATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCGACA
** * * * * *
12938301 GCACGCAAAGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
65 GCACGCAGGGGGGATC-GGTCAATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCACC
* *
12938366 CGCACGCCCGTTTCATGGGTTGGCTTAG
129 CGCACGCCAGTTTCATGGGTTGACTTAG
* * ** * * * * ** *
12938394 GCATAGGAGTTCATT-CCATGTGTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGTGGGGCCGGC
1 GCATACGAGTTCATTCCCA-GTCTAA-CATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCGAC
* * * * **
12938457 AGCATGCAGAGGGGGATCGGGCTAGTCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTCAGCA
64 AGCACGCAG-GGGGGATCGGTC-AATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCA
* * * *
12938522 CCCGTACGCTAGTTTCGTGGGTTGACTTAT
127 CCCGCACGCCAGTTTCATGGGTTGACTTAG
*
12938552 GCATACAGAGTTCATTCCCAGTCTAACATCGGACCGGACCGAGGGTTGCGACAGTAGGATCGACA
1 GCATAC-GAGTTCATTCCCAGTCTAACATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCGACA
* * * * * * * **
12938617 GCACGCAGGGGGGATCGAGTCAATCCCC-AGCTCGCACATTCTGCTTCTCC-AGCTGACTGAGTG
65 GCACGCAGGGGGGATCG-GTCAATCCCCGA-CTTGCGCATTATGCCTCTCCGA-CCGGCTCAGCA
* * *
12938680 CCCGCATGTTC-GTTTCATGGGTTGGCTTAG
127 CCCGCACG-CCAGTTTCATGGGTTGACTTAG
12938710 GCATACAGAGTTCATTCC
1 GCATAC-GAGTTCATTCC
12938728 ACGGCTAAGC
Statistics
Matches: 255, Mismatches: 68, Indels: 22
0.74 0.20 0.06
Matches are distributed among these distances:
156 3 0.01
157 47 0.18
158 154 0.60
159 48 0.19
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGAGTTCATTCCCAGTCTAACATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAG
CACGCAGGGGGGATCGGTCAATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCACCCG
CACGCCAGTTTCATGGGTTGACTTAG
Found at i:12938744 original size:26 final size:26
Alignment explanation
Indices: 12938710--12938814 Score: 124
Period size: 26 Copynumber: 4.0 Consensus size: 26
12938700 GTTGGCTTAG
*
12938710 GCATACAGAGTTCATT-CCACGGCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
12938736 GCATACAGAGTTGC-TTCCCAGTCTAG
1 GCATACAGAGTT-CATTCCCAGTCTAA
* * *
12938762 GCATACGGAGTTCATCCCCAGTATAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12938788 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12938814 G
1 G
12938815 ATCGGATCGG
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
25 1 0.01
26 63 0.93
27 4 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12939284 original size:223 final size:223
Alignment explanation
Indices: 12938870--12939313 Score: 523
Period size: 223 Copynumber: 2.0 Consensus size: 223
12938860 GGGGGGACGG
* *
12938870 GGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGACCGCACGCCCATTTCGTG
1 GGCCGATCCCCGACTTGCGCATTCTACCTCTCCGACCAGCTGAGCGACCGCACGCCCATTTCGTG
* * * * *
12938935 GGTTGGCTTAGGCATAAGGAGTTCATTCCGGGAATACGCCCCAATCAGACCGAGGGTTGTGGTAG
66 GGTTGGCTTAGGCATAAGGAGTTCATTCCAGGAATAAGCCCCAACCAAACCGAGGGTTGTGGCAG
** * * * * *
12939000 CTTGACCGGCAGCACGCAAAGGGGGACCCGACTGGTCCCCGACTTGCGCATTATGCCTCTTCGAC
131 CGGGACCGACAGCACACAAAGGGGGACCCGACCGATCCCCGACTTGCGCATTATCCCTCTTCGAC
* *
12939065 CGGCTCAGCACCCGCGCGCTCGTTTCGC
196 CGGCTCAACACCCGCACGCTCGTTTCGC
* * *
12939093 GGCCGATCCCTGGCTTGCGCATTCTACCTCTCC-AGCCAGCTGAGC-ACCCGCACGCCCGTTTCG
1 GGCCGATCCCCGACTTGCGCATTCTACCTCTCCGA-CCAGCTGAGCGA-CCGCACGCCCATTTCG
* * ** *
12939156 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGC
64 TGGGTTGGCTTAGGCATAAGGAGTTCATTCCAGGAATAAGCCCCAACCAAACCGAGGGTTGTGGC
* * *** * * * *
12939221 AGCGGGACCGATAGCACACAGAGGGGGATTGGGCCGATCCTCGGCTTGCTCATTATCCCTCTTCG
129 AGCGGGACCGACAGCACACAAAGGGGGACCCGACCGATCCCCGACTTGCGCATTATCCCTCTTCG
** * *
12939286 GTCGGCTCAACGCCTGCACGCTCGTTTC
194 ACCGGCTCAACACCCGCACGCTCGTTTC
12939314 ATGGGTTAAC
Statistics
Matches: 182, Mismatches: 37, Indels: 4
0.82 0.17 0.02
Matches are distributed among these distances:
222 2 0.01
223 180 0.99
ACGTcount: A:0.16, C:0.33, G:0.29, T:0.21
Consensus pattern (223 bp):
GGCCGATCCCCGACTTGCGCATTCTACCTCTCCGACCAGCTGAGCGACCGCACGCCCATTTCGTG
GGTTGGCTTAGGCATAAGGAGTTCATTCCAGGAATAAGCCCCAACCAAACCGAGGGTTGTGGCAG
CGGGACCGACAGCACACAAAGGGGGACCCGACCGATCCCCGACTTGCGCATTATCCCTCTTCGAC
CGGCTCAACACCCGCACGCTCGTTTCGC
Found at i:12939465 original size:157 final size:158
Alignment explanation
Indices: 12939094--12939510 Score: 448
Period size: 157 Copynumber: 2.6 Consensus size: 158
12939084 TCGTTTCGCG
* * * * *
12939094 GCCGATCCCTGGCTTGCGCATTCTACCTC-TCCAGCCAGCTGAGCACCCGCACGCCCGTTTCGTG
1 GCCGATCCCCGGCTTGCGCATTCTACCTCTTCGA-CCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * * *
12939158 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGCAG
65 GGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA-CACCAGCCAAACCGAGGGTTGCGGCAG
* * ** *
12939223 CGGGACCGATAGCACACAGAGGGGGATTGG
129 CAGGACCGACAGCACACAGAGGGGGACCGA
* * * * ** * * * *
12939253 GCCGATCCTCGGCTTGCTCATTATCCCTCTTCGGTCGGCTCAACGCCTGCACGCTCGTTTCATGG
1 GCCGATCCCCGGCTTGCGCATTCTACCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * * * * *
12939318 GTTAACTTATGCATACGGAGTTCATTCC-TAGTCTAA-ATCAGACCGAACTGAGGGTTGCGGTAG
66 GTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAACACCAG-CCAAACCGAGGGTTGCGGCAG
*
12939381 CAGGATCGACAGCACACAG-GGGGGACCGA
129 CAGGACCGACAGCACACAGAGGGGGACCGA
* * *
12939410 GCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGTTGAGCGCCCGCACGCTCATTTCGTGG
1 GCCGATCCCCGGCTTGCGCATTCTACCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
12939475 GTTGGA-TTAGGCATACGGAGTTCATTCCATGTCTAA
66 GTT-GACTTAGGCATACGGAGTTCATTCCATGTCTAA
12939511 GCATGCGGAG
Statistics
Matches: 208, Mismatches: 45, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
157 93 0.45
158 36 0.17
159 77 0.37
160 2 0.01
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.24
Consensus pattern (158 bp):
GCCGATCCCCGGCTTGCGCATTCTACCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
GTTGACTTAGGCATACGGAGTTCATTCCATGTCTAACACCAGCCAAACCGAGGGTTGCGGCAGCA
GGACCGACAGCACACAGAGGGGGACCGA
Found at i:12939521 original size:26 final size:26
Alignment explanation
Indices: 12939485--12939537 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12939475 GTTGGATTAG
12939485 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12939511 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12939537 G
1 G
12939538 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12940453 original size:158 final size:157
Alignment explanation
Indices: 12940190--12940950 Score: 590
Period size: 158 Copynumber: 4.8 Consensus size: 157
12940180 GCGACAACAA
* * * * * * *** *
12940190 GACCGACAGCACGCAAGGGGGATCGGGTCCATCCTGGCTTGCGCATTCTGCCTCTCCAACCGGTT
1 GACCGACAGCACACAAGGGGGACCGGGTCGATCCCGACTTGCGCATTATGCCTCTCTGGCCGGCT
* * * * * * *
12940255 GAGCGCCTGTATGCCCGTTTCGTGGGTTGCCTTAGGCATAGGGAGTTCATTCCATGTCTCAA-CC
66 GAGCACCCGCACGTCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT-AAGCC
* * *
12940319 CCAGCCGGACCGAGGGTTATCGTAGTGG
130 CCAGCCGGACCGAGGGTTGTGGCAGTGG
* * **
12940347 GACCGGCAGCACACAGAGGGGGACCGGGTCGATCCCGACTTGTGCATTATGCCTCTCTGGTTGGC
1 GACCGACAGCACACA-AGGGGGACCGGGTCGATCCCGACTTGCGCATTATGCCTCTCTGGCCGGC
* * *
12940412 TTAGCACCCGCAC-TCTCATTTCATGGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTAAGC
65 TGAGCACCCGCACGTC-CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
* **
12940476 CACAGCCGGATTGAGGGTTGTGGCAGTGG
129 CCCAGCCGGACCGAGGGTTGTGGCAGTGG
* ** * *
12940505 GATCGACAGCATGTCAA-GGGGATCGGG-CTGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCG
1 GACCGACAGCA-CACAAGGGGGACCGGGTC-GAT-CCCGACTTGCGCATTATGCCTCTCTGGCCG
** * *
12940568 GCTGAGTGCCCGCACGTCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAG
63 GCTGAGCACCCGCACGTCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
* *
12940633 CCCCAGCCAGACCGAGGGTTGTGGCAGCGG
128 CCCCAGCCGGACCGAGGGTTGTGGCAGTGG
** * * * *
12940663 GACCGACAGCATGCATAGGGGGACCAGGTCGATCCTCGCCTCGCGCATTATGGCTCT-TCGGCCG
1 GACCGACAGCACACA-AGGGGGACCGGGTCGATCC-CGACTTGCGCATTATGCCTCTCT-GGCCG
* * * * * * *
12940727 GCTCAGCGCTCGTACAC-T-CGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCT
63 GCTGAGCACCCG--CACGTCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCT
**** * * * **
12940789 AAG-ATTGGATCGGACCGAGGGTCGCGGCAGCAG
125 AAGCCCCAG-CCGGACCGAGGGTTGTGGCAGTGG
* * * * * * *
12940822 GATCGATAGCACATAGGGGGGACCGGGCCGATCCCCATCTTGCACAGTT-TGCCTCTCTGGCCGG
1 GACCGACAGCACACAAGGGGGACCGGGTCGATCCCGA-CTTGCGCA-TTATGCCTCTCTGGCCGG
* * * * * ** * *
12940886 CTGAGCACCCGGACG-CTCGTTTCATAGGTTAGCTTAGGCATACAGAGTTTATTCCACGTCTAAG
64 CTGAGCACCCGCACGTC-CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
12940950 C
128 C
12940951 ATATGGAGTT
Statistics
Matches: 480, Mismatches: 100, Indels: 46
0.77 0.16 0.07
Matches are distributed among these distances:
156 3 0.01
157 34 0.07
158 318 0.66
159 117 0.24
160 5 0.01
161 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.24
Consensus pattern (157 bp):
GACCGACAGCACACAAGGGGGACCGGGTCGATCCCGACTTGCGCATTATGCCTCTCTGGCCGGCT
GAGCACCCGCACGTCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
CAGCCGGACCGAGGGTTGTGGCAGTGG
Found at i:12940923 original size:317 final size:315
Alignment explanation
Indices: 12940285--12940950 Score: 693
Period size: 317 Copynumber: 2.1 Consensus size: 315
12940275 CGTGGGTTGC
* * *
12940285 CTTAGGCATAGGGAGTTCATTCCATGTCTCAA-CCCCAGCCGGACCGAGGGTTATCGTAGTGGGA
1 CTTAGGCATAGGGAGTTCATTCCATGTCT-AAGCCCCAGCCAGACCGAGGGTTATCGCAGCGGGA
* * * * ** *
12940349 CCGGCAGCACACAGAGGGGGACCGGGTCGATCCCGACTTGTGCATTATGCCTCTCTGGTTGGCTT
65 CCGACAGCACACAGAGGGGGACCAGGTCGATCCCGACTCGCGCATTATGCCTCTCTGGCCGGCTC
* * *
12940414 AGCACCCGCACTCTCATTTCATGGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTAAGCCAC
130 AGCACCCGCACACTCATTTCATGGGTTGACTTAGTCATACGGAGTTCATTCCATGTCTAAG-CAC
** * * ** ** * *
12940479 AGCCGGATTGAGGGTTGTGGCAGTGGGATCGACAGCATGTCAAGGGGATCGGGCTGATCCCCGAC
194 AGCCGGACCGAGGGTCGCGGCAGCAGGATCGACAGCACATCAAGGGGACCGGGCCGATCCCCGAC
* ** * * *
12940544 TTGCGCATTCTGCCTCTCTGGCCGGCTGAGTGCCCGCACGTCCGTTTCGTGGGTTGG
259 TTGCACATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGTCCGTTTCATAGGTTAG
* * *
12940601 CTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGAC
1 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATCGCAGCGGGAC
** * * *
12940666 CGACAGCATGCATAGGGGGACCAGGTCGATCCTCGCCTCGCGCATTATGGCTCT-TCGGCCGGCT
66 CGACAGCACACAGAGGGGGACCAGGTCGATCC-CGACTCGCGCATTATGCCTCTCT-GGCCGGCT
* * * * *
12940730 CAGCGCTCGTACACTCGTTTCGTGGGTTGACTTA-TGCATACGGAGTTCATTCCCA-GTCTAAG-
129 CAGCACCCGCACACTCATTTCATGGGTTGACTTAGT-CATACGGAGTTCATT-CCATGTCTAAGC
** * * *
12940792 ATTGGATCGGACCGAGGGTCGCGGCAGCAGGATCGATAGCACAT-AGGGGGGACCGGGCCGATCC
192 A-CAG-CCGGACCGAGGGTCGCGGCAGCAGGATCGACAGCACATCA-AGGGGACCGGGCCGATCC
*
12940856 CC-ATCTTGCACAGTT-TGCCTCTCTGGCCGGCTGAGCACCCGGACG-CTCGTTTCATAGGTTAG
254 CCGA-CTTGCACA-TTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGTC-CGTTTCATAGGTTAG
** * *
12940918 CTTAGGCATACAGAGTTTATTCCACGTCTAAGC
1 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
12940951 ATATGGAGTT
Statistics
Matches: 286, Mismatches: 53, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
315 3 0.01
316 89 0.31
317 189 0.66
318 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (315 bp):
CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATCGCAGCGGGAC
CGACAGCACACAGAGGGGGACCAGGTCGATCCCGACTCGCGCATTATGCCTCTCTGGCCGGCTCA
GCACCCGCACACTCATTTCATGGGTTGACTTAGTCATACGGAGTTCATTCCATGTCTAAGCACAG
CCGGACCGAGGGTCGCGGCAGCAGGATCGACAGCACATCAAGGGGACCGGGCCGATCCCCGACTT
GCACATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGTCCGTTTCATAGGTTAG
Found at i:12940952 original size:26 final size:26
Alignment explanation
Indices: 12940923--12940975 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
12940913 GTTAGCTTAG
*
12940923 GCATACAGAGTTTATT-CCACGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
12940949 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12940975 G
1 G
12940976 ATTTTGGGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12941668 original size:26 final size:26
Alignment explanation
Indices: 12941631--12941683 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12941621 GTTGACTTAG
*
12941631 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
*
12941657 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
12941683 G
1 G
12941684 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATACCCAGTCTAA
Found at i:12942041 original size:159 final size:156
Alignment explanation
Indices: 12941657--12942149 Score: 400
Period size: 159 Copynumber: 3.1 Consensus size: 156
12941647 CCCAGTCTAA
* * * * *
12941657 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACTGGATCGAGGGTTACGGCTGCAGGATCGGCA
1 GCATACG-AGTTCATT-CCAGTCTAACATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * *
12941722 GCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCGGCTAAGCACC
64 GCACGCAGGGGGGACCCGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGACCGGCTAAGCACC
* *
12941787 CGCACGCCCATTTCGTGGGTTGGCTTAG
129 CGCACGCCCATTTCGCGGGTTGACTTAG
* * * * * * * *
12941815 GCATAGGGAGTTCATTCCATGTGTAAGC-TC-CAGCTGGACTGAGGGTTGTGGTAGCGGGACCGG
1 GCATA-CGAGTTCATTCCA-GTCTAA-CATCGGA-CTGGACCGAGGGTTGCGGCAGCAGGATCGG
* * * ** * *
12941878 CAGCATGCAGAGGGGGACCCGGCTGGTCCCC-GACTTGCGTATTATGCCTCTTCGACCGGCTCAG
62 CAGCACGCAG-GGGGGACCCGGCCGATCCCCAG-CTTGCACATTATGCCTCTCCGACCGGCTAAG
* * * *
12941942 CACCCGTACGCTCGTTTCGCGGGTTGACTTAT
125 CACCCGCACGCCCATTTCGCGGGTTGACTTAG
** *
12941974 GCATACAGAGTTCATTCCTAGTCTAACATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATAC-GAGTTCATTCC-AGTCTAACATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * ** * * * * * ** * **
12942039 GCACGCA-GGGGGACCGGGCCAATCCCTGGCTCGCGCATTCTGCTTCTCCAACCAACTGAGTGCC
64 GCACGCAGGGGGGACCCGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGACCGGCTAAGCACC
* * * * *
12942103 CGCATGCTCGTTTCGTGGGTTGGCTTAG
129 CGCACGCCCATTTCGCGGGTTGACTTAG
12942131 GCATACAGAGTTCATTCCA
1 GCATAC-GAGTTCATTCCA
12942150 TGGCTAAGCA
Statistics
Matches: 262, Mismatches: 62, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 84 0.32
158 52 0.20
159 123 0.47
160 2 0.01
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGAGTTCATTCCAGTCTAACATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
ACGCAGGGGGGACCCGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGACCGGCTAAGCACCCG
CACGCCCATTTCGCGGGTTGACTTAG
Found at i:12942161 original size:26 final size:25
Alignment explanation
Indices: 12942131--12942225 Score: 109
Period size: 26 Copynumber: 3.7 Consensus size: 25
12942121 GTTGGCTTAG
*
12942131 GCATACAGAGTTCATTCCATGGCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
* *
12942157 GCATACAGAGTTCCTTCCCAGTCTAG
1 GCATACAGAGTTCATT-CCAGTCTAA
* *
12942183 GCATACGGAGTTCATCCTCAGTCTAA
1 GCATACAGAGTTCATTC-CAGTCTAA
*
12942209 GCATACGGAGTTCATTC
1 GCATACAGAGTTCATTC
12942226 GAAGTCTTAG
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
25 1 0.02
26 55 0.93
27 3 0.05
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.27
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:12942232 original size:52 final size:52
Alignment explanation
Indices: 12942128--12942232 Score: 131
Period size: 52 Copynumber: 2.0 Consensus size: 52
12942118 TGGGTTGGCT
* * *
12942128 TAGGCATACAGAGTTCATTCCATGGCTAAGCATACAGAGTTCCTTCCCAGTC
1 TAGGCATACAGAGTTCATCCCATGGCTAAGCATACAGAGTTCATTCCAAGTC
* * * *
12942180 TAGGCATACGGAGTTCATCCTCA-GTCTAAGCATACGGAGTTCATTCGAAGTC
1 TAGGCATACAGAGTTCATCC-CATGGCTAAGCATACAGAGTTCATTCCAAGTC
12942232 T
1 T
12942233 TAGATTGGAT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
52 43 0.96
53 2 0.04
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.28
Consensus pattern (52 bp):
TAGGCATACAGAGTTCATCCCATGGCTAAGCATACAGAGTTCATTCCAAGTC
Found at i:12942702 original size:26 final size:25
Alignment explanation
Indices: 12942672--12942803 Score: 113
Period size: 26 Copynumber: 5.0 Consensus size: 25
12942662 GTTGGCTTAG
*
12942672 GCATACAGAGTTCATTCCATGGCTAA
1 GCATACGGAGTTCATTCCA-GGCTAA
* * * *
12942698 GCATACAGAGTTCCTTCCCAGTCTAG
1 GCATACGGAGTTCATT-CCAGGCTAA
* *
12942724 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCAT-TCCAGGCTAA
*
12942750 GCATACTGGAGTTCATCCCCAGTG-TAA
1 GCATAC-GGAGTTCAT-TCCAG-GCTAA
*
12942777 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATT-CCAGGCTAA
12942803 G
1 G
12942804 ATCGGATCGG
Statistics
Matches: 90, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
26 63 0.70
27 27 0.30
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGGCTAA
Found at i:12942782 original size:53 final size:51
Alignment explanation
Indices: 12942672--12942803 Score: 156
Period size: 53 Copynumber: 2.5 Consensus size: 51
12942662 GTTGGCTTAG
* * * * * *
12942672 GCATACAGAGTTCATTCCATGGCTAAGCATACAGAGTTCCTTCCCAGTCTAG
1 GCATACGGAGTTCATCCCA-GTCTAAGCATACAGAGTTCATCCCCAGTCTAA
* *
12942724 GCATACGGAGTTCATCCCCAGTCTAAGCATACTGGAGTTCATCCCCAGTGTAA
1 GCATACGGAGTTCAT-CCCAGTCTAAGCATAC-AGAGTTCATCCCCAGTCTAA
12942777 GCATACGGAGTTCATTCCCAGTCTAAG
1 GCATACGGAGTTCA-TCCCAGTCTAAG
12942804 ATCGGATCGG
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
52 25 0.36
53 43 0.62
54 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (51 bp):
GCATACGGAGTTCATCCCAGTCTAAGCATACAGAGTTCATCCCCAGTCTAA
Found at i:12942946 original size:568 final size:567
Alignment explanation
Indices: 12942131--12943178 Score: 1408
Period size: 568 Copynumber: 1.8 Consensus size: 567
12942121 GTTGGCTTAG
* * * * * * *
12942131 GCATACAGAGTTCATT-CCATGGCTAAGCATACAGAGTTCCTTCCCAGTCTAGGCATACGGAGTT
1 GCATACAGAGTTCCTTCCCA-GTCTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
** * * *
12942195 CATCCTCAGTCTAAGCATACGGAGTTCATTCGAAGTCTTAGATTGGATTGGACCGAGGGTTGTGG
65 CATCC-CAGT-TAAGCATAC-GAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGG
* * * *
12942260 CAGTAAGATCGACAACATATAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCGGCCTCTCTG
127 CAGTAAGATCGACAGCACATAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCG
* *
12942325 GCCGGCTGAGCACCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTG
192 ACCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTG
* * * *
12942390 TAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGGCCAGCAGCACGCAGAGGGGGACCGGGCTG
257 TAAGCCCCAGCCGGACAGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCAGGCTG
* * *
12942455 GTCCTCGACTTGCGCATTATGCCTCTTCGACCGGCTCAACACCCGCACGCTAGTTTCATGGGTTA
322 GTCCTCGACTTGCGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTAGTTTCGTGGGTTG
* *
12942520 ACTTATGCATATAGAGTTCATTTTCGTCTAACATCGGACCAGACCGAGGGTTGCGACAGCAGGAT
387 ACTTATGCATATAGAGTTCATTCTCGTCTAACATCGGACCAGACCGAGGGTTGCGGCAGCAGGAT
* *
12942585 CGACAGCACGCAGAGGGGACCGGGCCAATCCCCGGCTCGTGCATTCTGCTTCT-C-C-A-GCTCG
452 CGACAGCACGCAG-GGGGACCGGGCCAATCCCCGGCTCGCGCATTCTGCTTCTCCACGAGGCCCG
12942646 CATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGGCTAA
516 CATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGGCTAA
12942698 GCATACAGAGTTCCTTCCCAGTCTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACTGGAGTT
1 GCATACAGAGTTCCTTCCCAGTCTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC-GGAGTT
*
12942763 CATCCCCAGTGTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGG
65 CAT-CCCAGT-TAAGCATAC-GAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGG
* * *
12942828 CAGTAAGATCGACAGCACACAGGGGGGACCAGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCG
127 CAGTAAGATCGACAGCACATAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCG
* * * *
12942893 ACTGGCTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
192 ACCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTG
* * * * ** *
12942958 TAAGCCCCAGCCAGACAGAGGGTTGTGGCAGCGGGACCGGCAGCGCACAGAGGGGGACTATACCG
257 TAAGCCCCAGCCGGACAGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCAGGCTG
* ** * * *
12943023 ATCCTCG-CTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGTTCA-TTTTGTGGGTT
322 GTCCTCGACTTGCGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCT-AGTTTCGTGGGTT
* * ** * ** *
12943086 GACTTATGCATATGGAGTTCATTCCCAGTCTATGATCAGACCAGATTGAGGGTTGCGGTAGCAGG
386 GACTTATGCATATAGAGTTCATTCTC-GTCTAACATCGGACCAGACCGAGGGTTGCGGCAGCAGG
*
12943151 ATTGACAGCACGCAGGGGGGACCGGGCC
450 ATCGACAGCACGCA-GGGGGACCGGGCC
12943179 TCTTCGACCG
Statistics
Matches: 417, Mismatches: 58, Indels: 11
0.86 0.12 0.02
Matches are distributed among these distances:
567 116 0.28
568 298 0.71
569 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (567 bp):
GCATACAGAGTTCCTTCCCAGTCTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
ATCCCAGTTAAGCATACGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGT
AAGATCGACAGCACATAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCG
GCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAG
CCCCAGCCGGACAGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCAGGCTGGTCC
TCGACTTGCGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTAGTTTCGTGGGTTGACTT
ATGCATATAGAGTTCATTCTCGTCTAACATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
AGCACGCAGGGGGACCGGGCCAATCCCCGGCTCGCGCATTCTGCTTCTCCACGAGGCCCGCATGC
TCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGGCTAA
Found at i:12943256 original size:26 final size:26
Alignment explanation
Indices: 12943227--12943279 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12943217 GTTGGATTAG
12943227 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12943253 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12943279 G
1 G
12943280 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12943976 original size:26 final size:26
Alignment explanation
Indices: 12943940--12943992 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12943930 TTCGTGGGAG
*
12943940 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
12943966 GCATACGGAGTTTATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
12943992 G
1 G
12943993 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:12944445 original size:158 final size:158
Alignment explanation
Indices: 12944055--12944784 Score: 669
Period size: 159 Copynumber: 4.6 Consensus size: 158
12944045 TCGGGTCCAT
* * *
12944055 CCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGCCT
1 CCCGGCTTGCGCATTCTGCCTCTCC-GACGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCT
* * * *
12944120 TAGGCATAGGGAGTTCATTCCATGTCTCAGCCCCAGTCGGACCGAGGGTTATGGCAGCGGGAACG
65 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGAACG
12944185 GCAGCACACAGAGGGGGACCGAGCTGATC
130 GCAGCACACAGAGGGGGACCGAGCTGATC
* * * * * * *
12944214 CCTGACTTGCGCATTATGCCTCTCCGACTGGCTCAACGCCCGCACTCTCGTTTCATGGGTTGGCT
1 CCCGGCTTGCGCATTCTGCCTCTCCGAC-GGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCT
* * * *
12944279 TAGTCATAGGGAGTTCATTCCATGTCTAAGCCACAGCCGGACCGAGGGTTGTCGCAGTGGGATCG
65 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGAACG
* *
12944344 GTAGCACACCGA-GGGGACCGAGCTGATC
130 GCAGCACACAGAGGGGGACCGAGCTGATC
* * * * *
12944372 CCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGTGCCTGCACGCCCATTTCGTGGGTTGGCT
1 CCCGGCTTGCGCATTCTGCCTCTCCGA-CGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCT
* * * *
12944437 TAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGTGGGACCG
65 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGAACG
* ** * *
12944502 ACAGCATGC-GCAGGGGGACCAAGCCGATC
130 GCAGCACACAG-AGGGGGACCGAGCTGATC
** * * * * * * * * *
12944531 CCCGGCTCACCCATTATGCCTCTTCGGTCGGCTCAGCGCTCGCACGCTCGTTTCGTGGGTTGACT
1 CCCGGCTTGCGCATTCTGCCTC-TCCGACGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCT
* * * * ** * * * ** *
12944596 TATGTATACGGAGTTCAATCC-TAGTCTAAG-ATCGGACCGGACTGAGGGTTGCGGCAGCAGGAT
65 TAGGCATAGGGAGTTCATTCCAT-GTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGTGGGAA
* ** * * *
12944659 CGACAGCATGCAG-GGGGGACTGGGCCGATC
128 CGGCAGCACACAGAGGGGGACCGAGCTGATC
* * * * * * * * * * *
12944689 CCCGACTTGTGCATTTTGCCTCTCTGGCCGGCTGAGCACCCGGATGCTCGTTTCATAGGTTAGCT
1 CCCGGCTTGCGCATTCTGCCTCTC-CGACGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCT
* *
12944754 TAGGCATACGGAGTTCATTCCACGTCTAAGC
65 TAGGCATAGGGAGTTCATTCCATGTCTAAGC
12944785 ATACGGAGTT
Statistics
Matches: 463, Mismatches: 97, Indels: 22
0.80 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 221 0.48
159 235 0.51
160 4 0.01
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.23
Consensus pattern (158 bp):
CCCGGCTTGCGCATTCTGCCTCTCCGACGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTT
AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGAACGG
CAGCACACAGAGGGGGACCGAGCTGATC
Found at i:12944645 original size:317 final size:316
Alignment explanation
Indices: 12944055--12944784 Score: 756
Period size: 317 Copynumber: 2.3 Consensus size: 316
12944045 TCGGGTCCAT
* *
12944055 CCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGCCT
1 CCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGCCT
* * * *
12944120 TAGGCATAGGGAGTTCATTCCATGTCTCAGCCCCAGTCGGACCGAGGGTTATGGCAGCGGGAACG
66 TAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGCGGGAACG
* * * * ** *
12944185 GCAGCACACAGAGGGGGACCGAGCTGATCCCTGACTTGCGCATTATGCCTCTCCGACTGGCTCAA
131 ACAGCACACAGAGGGGGACCAAGCCGATCCCCGACTCACCCATTATGCCTCTCCGACTGGCTCAA
* * * *
12944250 CGCCCGCACTCTCGTTTCATGGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTAAGCCACAG
196 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGTCATACGGAGTTCAATCCATGTCTAAG-CACAG
12944315 CCGGACCGAGGGTTGTCGCAGTGGGATCGGTAGCACACCGAGGGGACCGAGCTGATC
260 CCGGACCGAGGGTTGTCGCAGTGGGATCGGTAGCACACCGAGGGGACCGAGCTGATC
* * * * * *
12944372 CCCGGCTTGCGCATTCTGCCTCTCC-GATCGGTTGAGTGCCTGCACGCCCATTTCGTGGGTTGGC
1 CCCGGCTTGCGCATTCTGCCTCTCCAG-CCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGCC
* * * *
12944436 TTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGTGGGACC
65 TTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGCGGGAAC
** * * *
12944501 GACAGCATGC-GCAGGGGGACCAAGCCGATCCCCGGCTCACCCATTATGCCTCTTCG-GTCGGCT
130 GACAGCACACAG-AGGGGGACCAAGCCGATCCCCGACTCACCCATTATGCCTCTCCGACT-GGCT
* * *
12944564 CAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTATGT-ATACGGAGTTCAATCC-TAGTCTAAG-
193 CAACGCCCGCACGCTCGTTTCATGGGTTGACTTA-GTCATACGGAGTTCAATCCAT-GTCTAAGC
* * ** ** ** * * * * *
12944626 ATCGGACCGGACTGAGGGTTG-CGGCAGCAGGATCGACAGCATGCAGGGGGGACTGGGCCGATC
256 A-CAG-CCGGACCGAGGGTTGTC-GCAGTGGGATCGGTAGCACACCGAGGGGACCGAGCTGATC
* * * ** * * * * * *
12944689 CCCGACTTGTGCATTTTGCCTCTCTGGCCGGCTGAGCACCCGGATGCTCGTTTCATAGGTTAG-C
1 CCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCCCATTTCATGGGTT-GCC
* * *
12944753 TTAGGCATACGGAGTTCATTCCACGTCTAAGC
65 TTAGGCATAGGGAGTTCATTCCATGCCTAAGC
12944785 ATACGGAGTT
Statistics
Matches: 337, Mismatches: 66, Indels: 20
0.80 0.16 0.05
Matches are distributed among these distances:
315 1 0.00
316 7 0.02
317 325 0.96
318 4 0.01
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.23
Consensus pattern (316 bp):
CCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGCCT
TAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGCGGGAACG
ACAGCACACAGAGGGGGACCAAGCCGATCCCCGACTCACCCATTATGCCTCTCCGACTGGCTCAA
CGCCCGCACGCTCGTTTCATGGGTTGACTTAGTCATACGGAGTTCAATCCATGTCTAAGCACAGC
CGGACCGAGGGTTGTCGCAGTGGGATCGGTAGCACACCGAGGGGACCGAGCTGATC
Found at i:12944787 original size:26 final size:26
Alignment explanation
Indices: 12944757--12944809 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12944747 GTTAGCTTAG
12944757 GCATACGGAGTTCATTCC-ACGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
12944783 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
12944809 G
1 G
12944810 ATTTTGGGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:12945504 original size:26 final size:26
Alignment explanation
Indices: 12945467--12945519 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12945457 GTTGACTTAG
*
12945467 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
*
12945493 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
12945519 G
1 G
12945520 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATACCCAGTCTAA
Found at i:12946025 original size:26 final size:27
Alignment explanation
Indices: 12945990--12946062 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 27
12945980 CATTTCGTGG
*
12945990 CTAAGCATACAGAGTTCATTCCC-AGT
1 CTAAGAATACAGAGTTCATTCCCTAGT
* *
12946016 GTAGGAATACAGAGTTCA-TCCCTAGT
1 CTAAGAATACAGAGTTCATTCCCTAGT
* *
12946042 CTAAGCATACGGAGTTCATTC
1 CTAAGAATACAGAGTTCATTC
12946063 GAAGTCTTAG
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
25 4 0.11
26 32 0.84
27 2 0.05
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.27
Consensus pattern (27 bp):
CTAAGAATACAGAGTTCATTCCCTAGT
Found at i:12946069 original size:26 final size:25
Alignment explanation
Indices: 12945968--12946062 Score: 84
Period size: 26 Copynumber: 3.7 Consensus size: 25
12945958 GTTGGCTTAG
* *
12945968 GCATACGGAGTTCATTTC-GTGGCTAA
1 GCATACAGAGTTCATTCCAGT--CTAA
* *
12945994 GCATACAGAGTTCATTCCCAGTGTAG
1 GCATACAGAGTTCATT-CCAGTCTAA
* *
12946020 GAATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATTCC-AGTCTAA
*
12946046 GCATACGGAGTTCATTC
1 GCATACAGAGTTCATTC
12946063 GAAGTCTTAG
Statistics
Matches: 55, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
25 2 0.04
26 50 0.91
27 1 0.02
28 2 0.04
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:12946534 original size:26 final size:26
Alignment explanation
Indices: 12946498--12946550 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12946488 GTTGGATTAG
12946498 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12946524 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12946550 G
1 G
12946551 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12947549 original size:159 final size:159
Alignment explanation
Indices: 12947293--12947744 Score: 400
Period size: 158 Copynumber: 2.9 Consensus size: 159
12947283 AGGGTTGCGA
** * * ** * * *
12947293 CAGCAGGACCGACAGCATGCAGGGGGGATCAGG-TCGATCCC-GATTTACACATTCTGCCTCTCC
1 CAGCAGGACCGACAGCACACAGGGGGGA-CCGGACCGATCCCAGACGTACGCATTATGCCACTCC
* * * * *
12947356 -AGCCGGCTGAGCACCCACATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
65 GA-CCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* * ***
12947420 TCTAAGCCCCAG-TCAGA-CTGACGATTGTGG
129 TCTAAGCACCAGACCAGATC-GACGATTAAAG
* * * * * * *
12947450 CAG-TGAGACCGGCAGCACACAGAGGGGGACCAGG-CCGATCCCCGACTTGCGCATTATGTCTCT
1 CAGCAG-GACCGACAGCACACAG-GGGGGACC-GGACCGATCCCAGACGTACGCATTATGCCACT
* ** * *
12947513 CCGGCCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
63 CCGACCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCA
* * * *
12947578 -GTCTAAG-ATCAGACCGGATCGAGGGTTAAAG
127 TGTCTAAGCACCAGACCAGATCGACGATTAAAG
* * * *
12947609 CAGCAGGATCGATAGCACGCAGGGGGGACCGGACCGATCCCAGGCGTACGCATTATGCCACTCCG
1 CAGCAGGACCGACAGCACACAGGGGGGACCGGACCGATCCCAGACGTACGCATTATGCCACTCCG
* * *
12947674 ACCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
66 ACCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
12947739 TAAGCA
131 TAAGCA
12947745 TACGGAGTTC
Statistics
Matches: 234, Mismatches: 49, Indels: 22
0.77 0.16 0.07
Matches are distributed among these distances:
156 1 0.00
157 22 0.09
158 109 0.47
159 97 0.41
160 5 0.02
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.21
Consensus pattern (159 bp):
CAGCAGGACCGACAGCACACAGGGGGGACCGGACCGATCCCAGACGTACGCATTATGCCACTCCG
ACCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
TAAGCACCAGACCAGATCGACGATTAAAG
Found at i:12947752 original size:26 final size:26
Alignment explanation
Indices: 12947716--12947768 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12947706 GTTGGCTTAG
*
12947716 GCATAGGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
12947742 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
12947768 G
1 G
12947769 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:12948166 original size:354 final size:360
Alignment explanation
Indices: 12947655--12948326 Score: 815
Period size: 354 Copynumber: 1.9 Consensus size: 360
12947645 ATCCCAGGCG
* * *
12947655 TACGCATTATGCCACTCCGACCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCAT
1 TACGCATTATGCCACTCCGACCGGCAGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * *
12947720 AGGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAATTGAG
66 ACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAG
*
12947785 GGTTGGTACAGCATGACCAGCAGCAGGATCGACAGCACGCAGAAAGGG-CCGGGCTGATCCCCGG
131 GGTT-GTACAGCAT------CAGCAGGATCGACAGCACGCA-AAAGGGACCGGGCTGATCCCCGA
* * * *
12947849 CTT-CTACATTCTACCTCTCCGATCGGCTGAGCATCCGCACGCTCATTTCGTGGGTTGGCTTAGG
188 CTTGC-ACATTCTACCTCTCCGATCGGCTGAGCACCCGCACGCCCATTTCGTAGGTTGGATTAGG
* *
12947913 CATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGGACCTACAG
252 CATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCTACAG
12947978 CGAGATCGACTGCACGTAGAAAGGGACTGGGCTGATCCTCGACT
317 CGAGATCGACTGCACGTAGAAAGGGACTGGGCTGATCCTCGACT
* * ** *
12948022 TACGCATTATGCCTCTCC-AGCTGGCAGAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCA
1 TACGCATTATGCCACTCCGA-CCGGCAGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * *
12948086 TACGGAGTTCATCCCCA-GTCTGAGCATA-TGAGTTCATTCCCAGTCTAAGATCGGACCGGATCG
65 TACGGAGTTCAT-CCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCG
* ** * * ** *
12948149 AGGG-T-TAC-G-AT-AGCAGGATCGGCAGCACGCAAGGGGGATCGGGTTGATCCTTGACTTGCG
129 AGGGTTGTACAGCATCAGCAGGATCGACAGCACGCAAAAGGGACCGGGCTGATCCCCGACTTGCA
* * ** * *
12948209 CATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCCCGTTTCGTAGGTTGGATTAGGCATAGGG
194 CATTCTACCTCTCCGATCGGCTGAGCACCCGCACGCCCATTTCGTAGGTTGGATTAGGCATACGG
* * *
12948274 AGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTGTGGCAGCGGGACC
259 AGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACC
12948327 GACAACAAGC
Statistics
Matches: 261, Mismatches: 40, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
353 4 0.02
354 136 0.52
355 1 0.00
361 2 0.01
362 1 0.00
363 3 0.01
365 1 0.00
366 35 0.13
367 75 0.29
368 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (360 bp):
TACGCATTATGCCACTCCGACCGGCAGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
ACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAG
GGTTGTACAGCATCAGCAGGATCGACAGCACGCAAAAGGGACCGGGCTGATCCCCGACTTGCACA
TTCTACCTCTCCGATCGGCTGAGCACCCGCACGCCCATTTCGTAGGTTGGATTAGGCATACGGAG
TTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCTACAGCGAGATCGA
CTGCACGTAGAAAGGGACTGGGCTGATCCTCGACT
Found at i:12948605 original size:158 final size:156
Alignment explanation
Indices: 12948182--12948608 Score: 419
Period size: 158 Copynumber: 2.7 Consensus size: 156
12948172 AGCACGCAAG
** * * * *
12948182 GGGGATCGGGTTGATCCTTGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCCC
1 GGGGATCGGGTTGATCCCCGGCTTGTGCATTCTGCCTCTCCGGT-GGCTGAATGCCCGCACGCTC
* * * *
12948247 GTTTCGTAGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAGGGT
65 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGACCTAGCCAGATCGAGGGT
*
12948312 TGTGGCAGCGGGACCGACAACAAGCAGA
129 TGTGGCAGCAGGACCGACAACAAGCAGA
** * * * * * *
12948340 GGGGCATCGGGCCGATCCCCGGCTTGTGCATTATGCCTTTTCGGTGGCTCAACGCCCGCACACTC
1 GGGG-ATCGGGTTGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTGGCTGAATGCCCGCACGCTC
* * * * * * *
12948405 GTTTCATGGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAGATC-AGATCGGA-CAGAGG
65 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGACCTAG-CCAGATC-GAGG
** *
12948468 GTTGTGGCAGCAGGATTGACAGCATA-CAGGA
127 GTTGTGGCAGCAGGACCGACAACA-AGCA-GA
* * *
12948499 GGGGACCGGGTTGATCCCCGGCTTGTGCATTCTGCCTCTCCGACTGACTGAATGCCCGCACGCTC
1 GGGGATCGGGTTGATCCCCGGCTTGTGCATTCTGCCTCTCCG-GTGGCTGAATGCCCGCACGCTC
* * * * *
12948564 ATTTTGTGGGTTGGCCTAGGCATACGAAGTTCATTCTAGTCTAAG
65 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAG
12948609 CATACGGAGT
Statistics
Matches: 214, Mismatches: 48, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 126 0.59
159 85 0.40
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (156 bp):
GGGGATCGGGTTGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTGGCTGAATGCCCGCACGCTCG
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGACCTAGCCAGATCGAGGGTTG
TGGCAGCAGGACCGACAACAAGCAGA
Found at i:12948619 original size:25 final size:26
Alignment explanation
Indices: 12948583--12948634 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
12948573 GTTGGCCTAG
*
12948583 GCATACGAAGTTCATT-CTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
12948608 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12948634 G
1 G
12948635 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12949354 original size:26 final size:26
Alignment explanation
Indices: 12949318--12949368 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12949308 TGACTTAGGA
12949318 ATACGGAGTTCA-TCCATAGTCTAAGC
1 ATACGGAGTTCATTCC-TAGTCTAAGC
12949344 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCTAGTCTAAG
12949369 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCTAGTCTAAGC
Found at i:12949852 original size:26 final size:26
Alignment explanation
Indices: 12949816--12949868 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12949806 GTTGGCTTAG
12949816 GCATACAGAGTTCAAT-CCATGTCTAA
1 GCATACAGAGTTCAATCCCA-GTCTAA
*
12949842 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
12949868 G
1 G
12949869 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:12950721 original size:26 final size:26
Alignment explanation
Indices: 12950685--12950737 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12950675 GTTGGCTTAG
12950685 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
12950711 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
12950737 G
1 G
12950738 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:12958113 original size:26 final size:26
Alignment explanation
Indices: 12958076--12958128 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12958066 GTTGGCTTAG
12958076 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
12958102 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12958128 G
1 G
12958129 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12958316 original size:26 final size:26
Alignment explanation
Indices: 12958286--12958338 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12958276 GTTGACTTAG
* *
12958286 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGATCATCCCCAGTCTAA
*
12958312 GCATACAGAGATCATTCCCAGTCTAA
1 GCATACAGAGATCATCCCCAGTCTAA
12958338 G
1 G
12958339 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGATCATCCCCAGTCTAA
Found at i:12958603 original size:159 final size:158
Alignment explanation
Indices: 12958352--12958656 Score: 407
Period size: 159 Copynumber: 1.9 Consensus size: 158
12958342 GGATCAGATC
* * * * *
12958352 GAGGGTTGCGGTAGCAGGATCGGTAGCATGCAGGGGGGACCAGGCCGATCCCCGGCCTACGCATT
1 GAGGGTTGCGGCAGCAGGATCGGCAGCACGAAAGGGGGACCAGGCCGATCCCCGGCCTACGCATT
* * * ** * *
12958417 CTGCCTCTCCGATCGGGTGAGCGCCCGCATGC-CATTTTCATGTTTTGGCTTAGGCATAGGGAGT
66 CTGCCTCTCCGACCGGCTAAGCGCCCGCATGCTCA-TTTCATGGGTTAGCTTAGGCATACGGAGT
12958481 TCATTCCATGTCTAAGCCCCAACCAGACT
130 TCATTCCATGTCTAAGCCCCAACCAGACT
* * * * * *
12958510 GAGGGTTGTGGCAGCAGGATCGGCAGCACGTAAAGGGGGACCGGGCTGATCCCCAGG-TTGCGCT
1 GAGGGTTGCGGCAGCAGGATCGGCAGCACG-AAAGGGGGACCAGGCCGATCCCC-GGCCTACGCA
12958574 TTCTGCCTCTCCGACCGGCTAAGCGCCCGCATGCTCATTTCATGGGTTAGCTTAGGCATACGGAG
64 TTCTGCCTCTCCGACCGGCTAAGCGCCCGCATGCTCATTTCATGGGTTAGCTTAGGCATACGGAG
12958639 TTCATTCCATGTCTAAGC
129 TTCATTCCATGTCTAAGC
12958657 ATACGGAGTT
Statistics
Matches: 126, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
158 26 0.21
159 96 0.76
160 4 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GAGGGTTGCGGCAGCAGGATCGGCAGCACGAAAGGGGGACCAGGCCGATCCCCGGCCTACGCATT
CTGCCTCTCCGACCGGCTAAGCGCCCGCATGCTCATTTCATGGGTTAGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCCCCAACCAGACT
Found at i:12958659 original size:26 final size:26
Alignment explanation
Indices: 12958629--12958681 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12958619 GTTAGCTTAG
12958629 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12958655 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12958681 G
1 G
12958682 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12959982 original size:824 final size:824
Alignment explanation
Indices: 12958904--12960484 Score: 2226
Period size: 825 Copynumber: 1.9 Consensus size: 824
12958894 TTAAAGTGTT
* *
12958904 TGAAATGGGGACACTTTTTCAAATGGTCACAAAATATTCTCCACTTCGAGTTTTTAGCTGATTTT
1 TGAAATGGGGACACTTTTTCAAACGGTCACAAAATATTCTCCACTTCGAGTTTTTAGCTGAATTT
* * * * * *
12958969 TTTTGTGCATGCCAAAAAAAATACAAGGATCACTTCTACCAAATTTGGGGATAAAACTCTTTCTA
66 TTTTATGCATGCCAAAAAAAATAAAACGATCACCTCTACCAAATTTGGGGACAAAACGCTTTCTA
* * * * *
12959034 AAAAAATTTTAAAAAATCCCAAACTGTAAAAAGTTTTAAAAATTGTGACAAATAGAAAACGGGTT
131 AAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGGGTA
* * **
12959099 GTCTTGCCATGAAACTTCACATGAAGGTTTAGAGGACCATTGTATGAATTTACAAGCCATAAAAA
196 GTCTTGCCACGAAACTTCACATGAAGGCTTAGAGGAAAATTGTATGAATTTACAAGCCATAAAAA
*
12959164 TGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCAG
261 TGGCATTGACATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCAG
* *
12959229 CTTGCGCATCCTGCCTCTCTAGTCGGCTGAG--GTCTGCACGCTCATTTCGTGGGTTGACTTAGG
326 CTTGCGCATCCTGCCTCTCTAGTCGGCTGAGCATTC-GCACGCTCATTTCGTGGGTTGAATTAGG
* * *
12959292 CATATGGAGTTCAT-CCTAGTCTAAGCATAC-AGAGTTCATTCCCAGTCTAAGATCAGACT-GGA
390 CATACGAAGTTCATCCCAAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCAGA-TAGGA
* * * * * * * *
12959354 TCGAGGGTTGCGGCAGCATGATCGGTAGCATGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCA
453 CCGAGGGTTACGGCAGCAGGATCGATAGCATGCA-GGGGGAACAGGTCAATCCCCAGCTTACGCA
* * * *
12959419 TTCTGCCTCTCAGGCCGGTTGAGCACCCGCACACCCGTTTTGTTGGTTGGCTTAGGCATAGGGAG
517 TTCTGCCTCTCAGACCGATTGAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAG
* * * **
12959484 TTGATTCCATGTCAAAGCCCCAGTCAGACTGAGGGTTGTGGCAACGGGACCT-GCAGCATGCAAA
582 TTCATTCCATGTCAAAGCCCCAGCCAGACCGAGGGTTGTGGCAACGGGA-CTGGCAGCACACAAA
* * * * *
12959548 GGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCG-GCTGGCTGAGCACCCGCACGC
646 GGGGGACCAGGCCGATCCCCAGCTTGCGCATTATACCTCTCCGACCT-GCTCAGCACCCACACGC
* * * *
12959612 TTG-TTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCATATGAAGTTCATTC
710 TCGTTTCAGGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGCATATGAAGTTCATTC
12959675 CATGTCTGAGCGCCCACACGTCCGCACGCTCGTTTCGTTTCGTGGCCAGTC
774 CATGTCTGAGCGCCCACACGTCCGCACGCTCGTTTCGTTTCGTGGCCAGTC
* **
12959726 TGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTTTACTTCGAGTTTTTAGCTGAATT
1 TGAAATGGGGACAC-TTTTTCAAACGGTCACAAAATATTCTCCACTTCGAGTTTTTAGCTGAATT
*
12959791 TTTTTATGCATGCCAAAAAAAATAAAACGATCACCTCTACCAAATTTGGGGGCAAAACGCTTTCT
65 TTTTTATGCATGCCAAAAAAAATAAAACGATCACCTCTACCAAATTTGGGGACAAAACGCTTTCT
*
12959856 AAAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGGG
130 -AAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGGG
* *
12959921 TAGTCTTGCCACGGAACTTCACATGAAGGCTTAGGGGAAAATTGTATGAATTTACAAGCCATAAA
194 TAGTCTTGCCACGAAACTTCACATGAAGGCTTAGAGGAAAATTGTATGAATTTACAAGCCATAAA
*
12959986 AATGGCATTGACATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCTC
259 AATGGCATTGACATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCC
* * * * * *
12960051 AGCTTGCGCATCCTGCTTCTCTGGTCGGTTGAGCATTCGTATGCTCGTTTCGTGGGTTGAATTAG
324 AGCTTGCGCATCCTGCCTCTCTAGTCGGCTGAGCATTCGCACGCTCATTTCGTGGGTTGAATTAG
12960116 GCATACGAAGTTCATCCCAAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATAGGAC
389 GCATACGAAGTTCATCCCAAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATAGGAC
* * * * *
12960181 CGAGGGTTATGGCAGTAGGATCGATAGCATGCAGGGGGAACGGGTCAATCCTCAGCTTATGCATT
454 CGAGGGTTACGGCAGCAGGATCGATAGCATGCAGGGGGAACAGGTCAATCCCCAGCTTACGCATT
* ** * * * * *
12960246 CTGCCTCTCCGATTGATTGAGCGCTCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTT
519 CTGCCTCTCAGACCGATTGAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTT
* * * * *
12960311 CATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGTAGCGGGACTGGCAGCACATAAAGGG
584 CATTCCATGTCAAAGCCCCAGCCAGACCGAGGGTTGTGGCAACGGGACTGGCAGCACACAAAGGG
* * * * * *
12960376 GGATCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCTGTTCAGCGCCCACACGCTCGT
649 GGACCAGGCCGATCCCCAGCTTGCGCATTATACCTCTCCGACCTGCTCAGCACCCACACGCTCGT
*
12960441 TTCAGGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAG
714 TTCAGGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
12960485 ATCAGATCGG
Statistics
Matches: 660, Mismatches: 88, Indels: 18
0.86 0.11 0.02
Matches are distributed among these distances:
822 14 0.02
823 103 0.16
824 212 0.32
825 216 0.33
826 111 0.17
827 4 0.01
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (824 bp):
TGAAATGGGGACACTTTTTCAAACGGTCACAAAATATTCTCCACTTCGAGTTTTTAGCTGAATTT
TTTTATGCATGCCAAAAAAAATAAAACGATCACCTCTACCAAATTTGGGGACAAAACGCTTTCTA
AAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGGGTA
GTCTTGCCACGAAACTTCACATGAAGGCTTAGAGGAAAATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGACATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCAG
CTTGCGCATCCTGCCTCTCTAGTCGGCTGAGCATTCGCACGCTCATTTCGTGGGTTGAATTAGGC
ATACGAAGTTCATCCCAAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATAGGACCG
AGGGTTACGGCAGCAGGATCGATAGCATGCAGGGGGAACAGGTCAATCCCCAGCTTACGCATTCT
GCCTCTCAGACCGATTGAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
TTCCATGTCAAAGCCCCAGCCAGACCGAGGGTTGTGGCAACGGGACTGGCAGCACACAAAGGGGG
ACCAGGCCGATCCCCAGCTTGCGCATTATACCTCTCCGACCTGCTCAGCACCCACACGCTCGTTT
CAGGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCATGTCT
GAGCGCCCACACGTCCGCACGCTCGTTTCGTTTCGTGGCCAGTC
Found at i:12960152 original size:26 final size:26
Alignment explanation
Indices: 12960116--12960168 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12960106 GTTGAATTAG
12960116 GCATACGAAGTTCA-TCCCAAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
12960142 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12960168 G
1 G
12960169 ATCAGATAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12960440 original size:159 final size:158
Alignment explanation
Indices: 12960274--12960644 Score: 369
Period size: 159 Copynumber: 2.3 Consensus size: 158
12960264 GAGCGCTCGT
*
12960274 ACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCAGAC
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGACCAGAC
** * * *
12960338 CGAGGGTTGTGGTAGCGGGACTGGCAGCACATAAAGGG-GGATCAG-G-CTGATCCCCGGCTTGC
65 CGAGGGTTACGGTAGCAGGACTGACAGCAC--AAAGGGCGGA-CCGCGTC-GATCCCCGGCTTGC
* * * *
12960400 GCATTATGCCTCTCC-GACCTGTTCAGCGCCCAC
126 ACATTATGCCTCTCCTG-CCGGCTCAGCACCCAC
* ** ** * *
12960433 ACGCTCGTTTCAG-GGGTTGACTTAGGCATATAGAGTTCATTCCCA-GTCTAAGATCAGATCGGA
1 ACGCTCGTTTC-GTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCAGA
* * **
12960496 TCGAGGGTTACGGTAGCAGGATTGACAGCACGCAGGGCCGGACCGCGTCGATCCCCGGCTTGCAC
64 CCGAGGGTTACGGTAGCAGGACTGACAGCACAAAGGG-CGGACCGCGTCGATCCCCGGCTTGCAC
* * * *
12960561 ATTCTGCCTCTCCTGTCGGCTGAGCACCCGC
128 ATTATGCCTCTCCTGCCGGCTCAGCACCCAC
* *
12960592 ACGCTTGCTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12960645 ATACGAAGTT
Statistics
Matches: 172, Mismatches: 30, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
157 4 0.02
158 8 0.05
159 154 0.90
160 6 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAGACC
GAGGGTTACGGTAGCAGGACTGACAGCACAAAGGGCGGACCGCGTCGATCCCCGGCTTGCACATT
ATGCCTCTCCTGCCGGCTCAGCACCCAC
Found at i:12960654 original size:26 final size:26
Alignment explanation
Indices: 12960617--12960669 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12960607 GTTGGCTTAG
*
12960617 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
12960643 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12960669 G
1 G
12960670 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12961743 original size:26 final size:26
Alignment explanation
Indices: 12961699--12961756 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
12961689 CGTGGGTTGA
12961699 CTAAGGCATACGGACTTCATCCCTAGT
1 CTAA-GCATACGGACTTCATCCCTAGT
* * *
12961726 CTAAGCATATGGAGTTCATTCCTAGT
1 CTAAGCATACGGACTTCATCCCTAGT
12961752 CTAAG
1 CTAAG
12961757 ATTGGACCGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
CTAAGCATACGGACTTCATCCCTAGT
Found at i:12962064 original size:26 final size:26
Alignment explanation
Indices: 12962014--12962065 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12962004 GTTGGCTTAG
*
12962014 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
12962040 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
12962066 TAGTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:12962770 original size:26 final size:26
Alignment explanation
Indices: 12962719--12962771 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12962709 GTTGACTTAG
*
12962719 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
12962745 GCATACGGAGTTCATTCCTAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
12962771 G
1 G
12962772 ATCAAATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:12963036 original size:159 final size:160
Alignment explanation
Indices: 12962808--12963249 Score: 496
Period size: 159 Copynumber: 2.8 Consensus size: 160
12962798 GCAGAATAAG
* *
12962808 CAGCACGCA-AGGGGGATCGGGCCGATCCTTGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGC
1 CAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* * *
12962872 GCCCGCATGCTCGTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-
66 GCCCGCACGCTCGTTTAATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
* * ** **
12962936 TCGGACCGAGGGTTGTGGCAGTGGGACCGA
131 CCGAACCGAGGGTTACGGCAGCAGGACCGA
* * * * ** *
12962966 CAGCACGCAGAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGC
1 CAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* * ** * * ***
12963031 ACCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATTGG
66 GCCCGCACGCTCGTTTAATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG
* *
12963094 ACCGAACTGAGGGTTACGGCAGCAGGATCGA
130 ACCGAACCGAGGGTTACGGCAGCAGGACCGA
* * * * * * *
12963125 TAGCACACAGGGGGGGACCAGCCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCTGCTGAGC
1 CAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
** *
12963190 GCCCATACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 GCCCGCACGCTCGTTTAATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
12963250 TAAGAGCTCA
Statistics
Matches: 228, Mismatches: 51, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
158 13 0.06
159 211 0.93
160 4 0.02
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (160 bp):
CAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
GCCCGCACGCTCGTTTAATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
CCGAACCGAGGGTTACGGCAGCAGGACCGA
Found at i:12963780 original size:26 final size:26
Alignment explanation
Indices: 12963744--12963796 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12963734 GTTGGCTTTG
*
12963744 GCATATGGAGTTCAAT-CCATGTCTAA
1 GCATACGGAGTTCAATCCCA-GTCTAA
*
12963770 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
12963796 G
1 G
12963797 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:12964503 original size:26 final size:26
Alignment explanation
Indices: 12964466--12964518 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12964456 GTTGACTTAG
12964466 GCATATTGAGTTCATCCCCAGTCTAA
1 GCATATTGAGTTCATCCCCAGTCTAA
*
12964492 GCATA-TGAAGTTCATTCCCAGTCTAA
1 GCATATTG-AGTTCATCCCCAGTCTAA
12964518 G
1 G
12964519 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATATTGAGTTCATCCCCAGTCTAA
Found at i:12964792 original size:159 final size:157
Alignment explanation
Indices: 12964590--12964992 Score: 447
Period size: 159 Copynumber: 2.6 Consensus size: 157
12964580 TCCCGACTTG
* * * * ** *
12964590 CGCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCACGCCCGTTTCGTGAATTGGCTTAGGCATAG
1 CGCATTATGCCTCTCCGACAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* ** * *
12964655 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG-T-CATGGCAGC-GAGACTGACAGCA
66 GGAGTTCATTCCATGTCTAAGCCCAAACCAGACCGAGGGTTGCA-GCCA-CAG-GACTGACAGCA
* *
12964717 CGCAGAGGGGGACCGAGCCGATCCCCGGCTTA
128 CG--GAGGGGGACCGAGCCGATCCCCAGCATA
* *
12964749 CGCATTATGCCTCTCCGGA-AGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
1 CGCATTATGCCTCTCC-GACAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* * ** *
12964813 TGGAGTTCATTCCCA-GTATAAGATCAAACCAGACCGAGGGTTGCAGCCACAGGATTGACAGCAC
65 CGGAGTTCATT-CCATGTCTAAGCCCAAACCAGACCGAGGGTTGCAGCCACAGGACTGACAGCAC
* *
12964877 GTAGGGGGACCGGGCCGATCCCCAGCATA
129 GGAGGGGGACCGAGCCGATCCCCAGCATA
* * * * **
12964906 TGCATTCTGCCTCTCCGACCGACTGAGCGCCCGTTCGCTCGTTTCGTGGGTTGGCTTAGGCATAC
1 CGCATTATGCCTCTCCGACAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
12964971 GGAGTTCATTCCATGTCTAAGC
66 GGAGTTCATTCCATGTCTAAGC
12964993 ATACGGAGTT
Statistics
Matches: 204, Mismatches: 33, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
156 5 0.02
157 93 0.46
159 94 0.46
160 10 0.05
161 2 0.01
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.22
Consensus pattern (157 bp):
CGCATTATGCCTCTCCGACAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCCCAAACCAGACCGAGGGTTGCAGCCACAGGACTGACAGCACGG
AGGGGGACCGAGCCGATCCCCAGCATA
Found at i:12965001 original size:26 final size:26
Alignment explanation
Indices: 12964965--12965017 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12964955 GTTGGCTTAG
12964965 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12964991 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12965017 G
1 G
12965018 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12965677 original size:159 final size:157
Alignment explanation
Indices: 12965459--12965872 Score: 471
Period size: 159 Copynumber: 2.6 Consensus size: 157
12965449 TGAGGTGATC
*
12965459 CCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCAC-ATCTGTTTCGTGGGTTAGC
1 CCCGGCTTGCGCATTCTGCCTATCCGGTCGGCTGAGCGCCCGCACGATC-GTTTCGTGGGTT-GC
* * * * * *
12965523 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGA-TCAAGGGTTGTGGCAGCGGGA
64 TTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACTAGACT-AAGGGTTGCGGCAGCAGGA
*
12965586 CC-AGCAGTACGCAGAGGGGGATCGGGCCGAT
128 CCGA-CAGCACGCAG-GGGGGATCGGGCCGAT
* * * * * * * *
12965617 CATCGGCTTGCGCATTATGCCTTTTCGGTCGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGAC
1 C-CCGGCTTGCGCATTCTGCCTATCCGGTCGGCTGAGCGCCCGCACGATCGTTTCGTGGGTTG-C
* *
12965682 TTATGCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACTAGACTGAGGGTTGCGGCAGCAGGA
64 TTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACTAGACTAAGGGTTGCGGCAGCAGGA
*
12965745 TCGACAGCACGCAGGGGGGATCGGGCCGAT
128 CCGACAGCACGCAGGGGGGATCGGGCCGAT
* * * * *
12965775 CCCAAGCTTGCGCATTCTACCTATCCGGTCGGCTGAGCACCCGCACGTTTGTTTCGTGGGTTGGC
1 CCC-GGCTTGCGCATTCTGCCTATCCGGTCGGCTGAGCGCCCGCACGATCGTTTCGTGGGTT-GC
*
12965840 TTAGGCATACGGAGTTTATTCCATGTCTAAGCA
64 TTAGGCATACGGAGTTCATTCCATGTCTAAGCA
12965873 TACGGAGTTC
Statistics
Matches: 213, Mismatches: 32, Indels: 21
0.80 0.12 0.08
Matches are distributed among these distances:
157 4 0.02
158 97 0.46
159 105 0.49
160 7 0.03
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
CCCGGCTTGCGCATTCTGCCTATCCGGTCGGCTGAGCGCCCGCACGATCGTTTCGTGGGTTGCTT
AGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACTAGACTAAGGGTTGCGGCAGCAGGACCG
ACAGCACGCAGGGGGGATCGGGCCGAT
Found at i:12965835 original size:158 final size:157
Alignment explanation
Indices: 12965377--12965870 Score: 482
Period size: 158 Copynumber: 3.1 Consensus size: 157
12965367 AAGCACACGA
* * * * * * * *
12965377 AGTTCATTCACA-GTCTAAGATCAAACTGGACCGAGAGTTGCGGTAGCAGGATTGGCAACACGCA
1 AGTTCATTC-CATGTCTAAGACCAGACTGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * * *
12965441 AGGGGCA-CTGAGG-TGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCAC
65 GGGGGGATC-G-GGCCGAT-CCCGGCTTGCGCATTCTGCCTATCCGGTCGGCTGAGCGCCCGCAC
* * *
12965504 ATCTGTTTCGTGGGTT-AGCTTAGGCATAGGG
127 GTTTGTTTCGTGGGTTGA-CTTAGGCATACGG
* * * * * * *
12965535 AGTTCATTCCATGTCTAAGCCCCAGTC-GGA-TCAAGGGTTGTGGCAGCGGGA-CCAGCAGTACG
1 AGTTCATTCCATGTCTAAG-ACCAGACTGGACT-GAGGGTTGCGGCAGCAGGATCGA-CAGCACG
* * * * * *
12965597 CAGAGGGGGATCGGGCCGATCATCGGCTTGCGCATTATGCCTTTTCGGTCGGCTCAGTGCCCGCA
63 CAG-GGGGGATCGGGCCGATC-CCGGCTTGCGCATTCTGCCTATCCGGTCGGCTGAGCGCCCGCA
* * * *
12965662 CGCTCGTTTCATGGGTTGACTTATGCATACGG
126 CGTTTGTTTCGTGGGTTGACTTAGGCATACGG
*
12965694 AGTTCATTCCCA-GTCTAAGACCAGACTAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
1 AGTTCATT-CCATGTCTAAGACCAGACTGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * *
12965758 GGGGGGATCGGGCCGATCCCAAGCTTGCGCATTCTACCTATCCGGTCGGCTGAGCACCCGCACGT
65 GGGGGGATCGGGCCGATCCC-GGCTTGCGCATTCTGCCTATCCGGTCGGCTGAGCGCCCGCACGT
*
12965823 TTGTTTCGTGGGTTGGCTTAGGCATACGG
129 TTGTTTCGTGGGTTGACTTAGGCATACGG
*
12965852 AGTTTATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
12965871 CATACGGAGT
Statistics
Matches: 267, Mismatches: 54, Indels: 30
0.76 0.15 0.09
Matches are distributed among these distances:
157 6 0.02
158 139 0.52
159 114 0.43
160 8 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
AGTTCATTCCATGTCTAAGACCAGACTGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
GGGGGATCGGGCCGATCCCGGCTTGCGCATTCTGCCTATCCGGTCGGCTGAGCGCCCGCACGTTT
GTTTCGTGGGTTGACTTAGGCATACGG
Found at i:12965873 original size:26 final size:26
Alignment explanation
Indices: 12965844--12965895 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12965834 GTTGGCTTAG
*
12965844 GCATACGGAGTTTATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
12965870 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
12965896 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:12966341 original size:26 final size:26
Alignment explanation
Indices: 12966305--12966355 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12966295 GTTGACTTAG
12966305 GCATACGGAGTTC-TTCCCCAGTCTAA
1 GCATACGGAGTTCATT-CCCAGTCTAA
12966331 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
12966356 GGATCAGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12966783 original size:158 final size:158
Alignment explanation
Indices: 12966331--12966832 Score: 578
Period size: 158 Copynumber: 3.2 Consensus size: 158
12966321 CCCAGTCTAA
* * **
12966331 GCATACGGAGTTCATTCCCAGTCTAGGATCAGACTGGATCGAGGGTTACGGCAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
12966396 GCACGCAGGGGGGACCGGGCCGATCCTCGGCCTGTACATTCTGCCTCTCCGGCCGGCTGAGCACC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCC
* * *
12966461 CGCACACCCGATTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** *
12966489 GAATAGGGAGTTCATT-CCATGTCTAAG-TCCCA-ACTGGATCGAGGGTTGTGGCAGTGGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGAT--CAGACTGGATCGAGGGTTGCGGCAGCAGGATCG
* * * ** *
12966551 ACAGCACGCGGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTTAGCTCAG
63 ACAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAG
* **
12966616 CGCCCGCACGCTCGTTTCGTGGATTAACTTAG
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
12966648 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGACAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * ** * *
12966713 ACACGTAGGGGGGATCGGGTTGATCCCCAGCTTGCACATTCTACCTCTCCGGTCGGCTGAGCGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCC
12966778 CGCACGCTCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
**
12966806 GCATACGGAGTTCATTCCTTGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
12966833 CATATGGAGT
Statistics
Matches: 280, Mismatches: 57, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
157 4 0.01
158 151 0.54
159 121 0.43
160 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12966842 original size:26 final size:26
Alignment explanation
Indices: 12966806--12966858 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12966796 GTTGGCTTAG
**
12966806 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12966832 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12966858 G
1 G
12966859 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12967195 original size:962 final size:962
Alignment explanation
Indices: 12965330--12967251 Score: 2898
Period size: 962 Copynumber: 2.0 Consensus size: 962
12965320 GCTCATTTTG
12965330 TGGGTTGAATTAGGCATACGGAGTTCATCCCCAGTCTAAGCACACGAAGTTCATTCACAGTCTAA
1 TGGGTTGAATTAGGCATACGGAGTTCATCCCCAGTCTAAGCACACGAAGTTCATTCACAGTCTAA
* * * * *
12965395 GATCAAACTGGACCGAGAGTTGCGGTAGCAGGATTGGCAACACGCAAGGGGCACTGAGGTGATCC
66 GATCAAACTGGACCGAGAGTTACGGCAGCAGGATCGGCAACACGCAAGGGGCACCGAGGCGATCC
* * * * * * *
12965460 CCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACATCTGTTTCGTGGGTTAGCTT
131 CCGGCCTGCACATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACACCCGATTCGTGGGTTAGCTT
* * *
12965525 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCAAGGGTTGTGGCAGCGGGACCAG
196 AGGAATAGGGAGTTCATTCCATGTCTAAGCCCAACTCGGATCAAGGGTTGTGGCAGCGGGACCAG
* * * * * * *
12965590 CAGTACGCAGAGGGGGATCGGGCCGATCATCGGCTTGCGCATTATGCCTTTTCGGTCGGCTCAGT
261 CAGCACGCAGAGGGGGACCGGGCCGATCACCGGCTTGCGCATTATGCCTCTCCGGTCAGCTCAGC
* * * *
12965655 GCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGACCAGAC
326 GCCCGCACGCTCGTTTCATGGATTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCAGAC
* * *
12965720 TAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCAAGCTTG
391 TAGACCGAGGGTTGCGACAGCAGGATCGACAACACGCAGGGGGGATCGGGCCGATCCCAAGCTTG
* * *
12965785 CGCATTCTACCTATCCGGTCGGCTGAGCACCCGCACGTTTGTTTCGTGGGTTGGCTTAGGCATAC
456 CACATTCTACCTATCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * *
12965850 GGAGTTTATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAATATTTTGAGCCACGGTGCA
521 GGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCA
* * * *
12965915 CATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTCTTTTTCACCCGGGGCACCATCACCGGAGCA
586 CATGCTGGGCTCGAGCATGTACTGGTGCCGCATTCTTTTTCACCCAGGGCACCAACACCGAAGCA
* * * ** *
12965980 TCACCGGAGAGCCTAACCGGCGGCATTGGGGGTTTCGGTGATTGAGGGGGCCGGGGGGTGTGCGC
651 TCACCGGAGAGCCTAACCGGCGGCATTAGGGATTCCGACGATTGAGGGGGCCGGGGGGTGTGCAC
* *
12966045 ACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT
716 AAATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * *
12966110 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAG
781 GAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCCGCCAGCAACCATTAAAG
*
12966175 TGTCCATAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCGACTTCGAGTTTTTAGCTG
846 TGTCCATAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTG
* *
12966240 AATTTTTTTGTGCATACCAACAAAAATACAAGGATCACCTCTACCAAATTCA
911 AATGTTTTTGTGCATACCAAAAAAAATACAAGGATCACCTCTACCAAATTCA
* * * * * *
12966292 TGGGTTGACTTAGGCATACGGAGTTCTTCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAG
1 TGGGTTGAATTAGGCATACGGAGTTCATCCCCAGTCTAAGCACACGAAGTTCATTCACAGTCTAA
* * * * * * *
12966357 GATCAGACTGGATCGAGGGTTACGGCAGCAGGATCGGTAGCACGCAGGGGGGACCG-GGCCGATC
66 GATCAAACTGGACCGAGAGTTACGGCAGCAGGATCGGCAACACGCAAGGGGCACCGAGG-CGATC
* * *
12966421 CTCGGCCTGTACATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACACCCGATTCGTGGGTTGGCT
130 CCCGGCCTGCACATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACACCCGATTCGTGGGTTAGCT
* *
12966486 TAGGAATAGGGAGTTCATTCCATGTCTAAGTCCCAACT-GGATCGAGGGTTGTGGCAGTGGGACC
195 TAGGAATAGGGAGTTCATTCCATGTCTAAG-CCCAACTCGGATCAAGGGTTGTGGCAGCGGGACC
* * *
12966550 -GACAGCACGCGGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTTAGCTC
259 AG-CAGCACGCAGAGGGGGACCGGGCCGATCACCGGCTTGCGCATTATGCCTCTCCGGTCAGCTC
* *
12966614 AGCGCCCGCACGCTCGTTTCGTGGATTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA
323 AGCGCCCGCACGCTCGTTTCATGGATTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCA
* * ** *
12966679 GACTAGACCGAGGGTTGCGACAGCAGGATTGACAACACGTAGGGGGGATCGGGTTGATCCCCAGC
388 GACTAGACCGAGGGTTGCGACAGCAGGATCGACAACACGCAGGGGGGATCGGGCCGATCCCAAGC
* *
12966744 TTGCACATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
453 TTGCACATTCTACCTATCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
* *
12966809 TACGGAGTTCATTCCTTGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGGT
518 TACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGGT
* * *
12966874 GCACATGCTGGGCTCGAGCATGTACTGGTGCCGCATTTTTTTTCGCCCAGGGCACCAACATCGAA
583 GCACATGCTGGGCTCGAGCATGTACTGGTGCCGCATTCTTTTTCACCCAGGGCACCAACACCGAA
* *
12966939 GCATCGCCGGAGAGCCTAACCGGCGGCATTAGGGATTCCGACGATTGGGGGGGCCGGGGGGTGTG
648 GCATCACCGGAGAGCCTAACCGGCGGCATTAGGGATTCCGACGATTGAGGGGGCCGGGGGGTGTG
* *
12967004 CACAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAAC
713 CACAAATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
12967069 CTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCCGCCAGCAACCATTA
778 CTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCCGCCAGCAACCATTA
* * *
12967134 AAGTGTCTGA-AATGGGGACACTTTTTTCAAACGGTCGCAAAATCTTCTCCACTTTGAGTTTTTA
843 AAGTGTC-CATAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTA
* *
12967198 GCTGAATGTTTTTGTGCATGCCAAAAAAAATACAGGGATCACCTCTACCAAATT
907 GCTGAATGTTTTTGTGCATACCAAAAAAAATACAAGGATCACCTCTACCAAATT
12967252 TGGGGACAAA
Statistics
Matches: 858, Mismatches: 98, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
961 3 0.00
962 849 0.99
963 6 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (962 bp):
TGGGTTGAATTAGGCATACGGAGTTCATCCCCAGTCTAAGCACACGAAGTTCATTCACAGTCTAA
GATCAAACTGGACCGAGAGTTACGGCAGCAGGATCGGCAACACGCAAGGGGCACCGAGGCGATCC
CCGGCCTGCACATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACACCCGATTCGTGGGTTAGCTT
AGGAATAGGGAGTTCATTCCATGTCTAAGCCCAACTCGGATCAAGGGTTGTGGCAGCGGGACCAG
CAGCACGCAGAGGGGGACCGGGCCGATCACCGGCTTGCGCATTATGCCTCTCCGGTCAGCTCAGC
GCCCGCACGCTCGTTTCATGGATTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCAGAC
TAGACCGAGGGTTGCGACAGCAGGATCGACAACACGCAGGGGGGATCGGGCCGATCCCAAGCTTG
CACATTCTACCTATCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCA
CATGCTGGGCTCGAGCATGTACTGGTGCCGCATTCTTTTTCACCCAGGGCACCAACACCGAAGCA
TCACCGGAGAGCCTAACCGGCGGCATTAGGGATTCCGACGATTGAGGGGGCCGGGGGGTGTGCAC
AAATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCCGCCAGCAACCATTAAAG
TGTCCATAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTG
AATGTTTTTGTGCATACCAAAAAAAATACAAGGATCACCTCTACCAAATTCA
Found at i:12967567 original size:26 final size:26
Alignment explanation
Indices: 12967530--12967582 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12967520 GTTGAATTAG
*
12967530 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
12967556 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12967582 G
1 G
12967583 ATCAGACTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12967846 original size:158 final size:159
Alignment explanation
Indices: 12967556--12967964 Score: 472
Period size: 158 Copynumber: 2.6 Consensus size: 159
12967546 CCCAGTCTAA
** ** *
12967556 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTTGACCGAGGGTTGTGACAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGCCCAGACCAGACTGAGGGTTGTGACAGCAGGATCGACA
** * ** *
12967621 GCACGCAGA-GGGGATCGGGCTGATCCTCAGCTTGCTTATTCTGCCTCTCTGGTTGGCTAAGCAC
66 GCACGCAGAGGGGGATCGGGCTGATCCTCAGCTTGCACATTATGCCTCTCCAGTCGGCTAAGCAC
*
12967685 CCGCACGC-CTATTTTGTG-GCTT-AGCTTAG
131 CCGCACGCTC-ATTTCGTGAG-TTGA-CTTAG
* * * * *
12967714 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CCGGACTGAGGGTTGTGGCAGCGGGATCGA
1 GCATACGAAGTTCATTCCCA-GTCTAAGCCC-AGACCAGACTGAGGGTTGTGACAGCAGGATCGA
* * * * *
12967777 CAGCACGCAGAGGGGGACCGGGCCGATCC-CCGCTTGCACATTATGCCTCTCCAGTCGGCTCAGT
64 CAGCACGCAGAGGGGGATCGGGCTGATCCTCAGCTTGCACATTATGCCTCTCCAGTCGGCTAAGC
*
12967841 GCCCGCACGCTCATTTCGTGAGTTGACTTAG
129 ACCCGCACGCTCATTTCGTGAGTTGACTTAG
** * *
12967872 GCATACGAAGTTCATTCCCAGTCTAAGGTCAGACCAGACTGAGGGTTGCGACAGCATGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGCCCAGACCAGACTGAGGGTTGTGACAGCAGGATCGACA
*
12967937 GCACGCAGGGGGGGATCGGGCTGATCCT
66 GCACGCAGAGGGGGATCGGGCTGATCCT
12967965 TGACTTACGT
Statistics
Matches: 208, Mismatches: 34, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
157 5 0.02
158 180 0.87
159 23 0.11
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (159 bp):
GCATACGAAGTTCATTCCCAGTCTAAGCCCAGACCAGACTGAGGGTTGTGACAGCAGGATCGACA
GCACGCAGAGGGGGATCGGGCTGATCCTCAGCTTGCACATTATGCCTCTCCAGTCGGCTAAGCAC
CCGCACGCTCATTTCGTGAGTTGACTTAG
Found at i:12968056 original size:159 final size:154
Alignment explanation
Indices: 12967556--12968058 Score: 467
Period size: 158 Copynumber: 3.2 Consensus size: 154
12967546 CCCAGTCTAA
* ** *
12967556 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGACTTGACCGAGGGTTGTGACAGCAGGATCGAC
1 GCATACG-AGTTCATT--CATGTCTAAGGTCAGACCAGACTGAGGGTTGTGACAGCAGGATCGAC
* * * * *
12967620 AGCACGCA-GAGGGGATCGGGCTGATCCTCAGCTTGCTTATTCTGCCTCTCTGGTTGGCTAAGCA
63 AGCACGCAGGGGGGGATCGGGCTGATCCTGA-CTTGCATATTCTGCCTCTCCGG-TGGCTAAGCG
* *
12967684 CCCGCACGCCTATTTTGTGGCTTAGCTTAG
126 CCCGCACGCC-ATTTTGTGGGTTGGCTTAG
* ** * * *
12967714 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCGGACTGAGGGTTGTGGCAGCGGGATCGAC
1 GCATA-CGAGTTCATT-CATGTCTAAGGTC-AGACCAGACTGAGGGTTGTGACAGCAGGATCGAC
* * * * * * * * *
12967778 AGCACGCAGAGGGGGACCGGGCCGATCCCCG-CTTGCACATTATGCCTCTCCAGTCGGCTCAGTG
63 AGCACGCAGGGGGGGATCGGGCTGAT-CCTGACTTGCATATTCTGCCTCTCCGGT-GGCTAAGCG
* * *
12967842 CCCGCACGCTCATTTCGTGAGTTGACTTAG
126 CCCGCACGC-CATTTTGTGGGTTGGCTTAG
* *
12967872 GCATACGAAGTTCATTCCCA-GTCTAAGGTCAGACCAGACTGAGGGTTGCGACAGCATGATCGAC
1 GCATACG-AGTTCATT--CATGTCTAAGGTCAGACCAGACTGAGGGTTGTGACAGCAGGATCGAC
* * * * *
12967936 AGCACGCAGGGGGGGATCGGGCTGATCCTTGACTTACGTATTCTGTCTCTCCGGCTAGCTGAGCG
63 AGCACGCAGGGGGGGATCGGGCTGATCC-TGACTTGCATATTCTGCCTCTCCGG-TGGCTAAGCG
12968001 CCCGCACGCACATTTTGTGGGTTGGCTTAG
126 CCCGCACGC-CATTTTGTGGGTTGGCTTAG
12968031 GCATACAGAGTTCATTCAGTGTCTAAGG
1 GCATAC-GAGTTCATTCA-TGTCTAAGG
12968059 ATACGAAGTT
Statistics
Matches: 277, Mismatches: 52, Indels: 31
0.77 0.14 0.09
Matches are distributed among these distances:
157 11 0.04
158 172 0.62
159 90 0.32
160 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (154 bp):
GCATACGAGTTCATTCATGTCTAAGGTCAGACCAGACTGAGGGTTGTGACAGCAGGATCGACAGC
ACGCAGGGGGGGATCGGGCTGATCCTGACTTGCATATTCTGCCTCTCCGGTGGCTAAGCGCCCGC
ACGCCATTTTGTGGGTTGGCTTAG
Found at i:12968433 original size:26 final size:26
Alignment explanation
Indices: 12968397--12968449 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12968387 GTGGACTTAG
12968397 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12968423 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12968449 G
1 G
12968450 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12968770 original size:26 final size:26
Alignment explanation
Indices: 12968740--12968792 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12968730 GTTGACTTAT
12968740 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
12968766 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12968792 G
1 G
12968793 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12968813 original size:343 final size:341
Alignment explanation
Indices: 12968379--12969107 Score: 946
Period size: 343 Copynumber: 2.1 Consensus size: 341
12968369 CACACGCATG
* * *
12968379 TTTCGTGGGTGGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * *
12968444 TCTAAGATCGGACCGGATCGAGGGTTGTGACAGCAGGATTGGTAGCACGCT-GGGGGGACCGGGC
66 TCTAAGATCGGACCGGACCAAGGGTTGAGACAGCAAGATTGATAGCACG-TAGGAGGGACCGGGC
* ** * * *
12968508 CGATCC-CTGGCTTATGCTTTCTGCCTCTTCGATTAG-CTGAGTGCCCGCACGCCCGTTTCATGG
130 CGATCCTC-AGCTTACACATTCTGCCTCTTCG-GTAGACTGAGCGCCCGCACGCCCGTTTCATGG
*
12968571 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGATC-GAGGGTTGTGGCAG
193 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CAGAACTGA-GGTTGTGGCAG
* * * * *
12968635 CGAGACCGATAGCACATAGAGGGTGATCGAGCT-GATCCTCGGTTTACGCATTATGCCTCTTCGG
256 CGAGACCGATAGCACACAGAGGG-GA-CCAGCTCGATCCCCGGCTTACGCATTATACCTCTTCGG
*
12968699 TTGGCTCAGCACCCGTACCCTCA
319 TTGGCTCAGCACCCGCACCCTCA
* *
12968722 TTTCATGGGTTGACTTATGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * *
12968787 TCTAAGATTGGATCGGACCAAGGGTTGAGATAGCAAGATTGATAGCACGTATGAGGGATCGGGTC
66 TCTAAGATCGGACCGGACCAAGGGTTGAGACAGCAAGATTGATAGCACGTAGGAGGGACCGGGCC
* * * *
12968852 GATCCTCAGCTTGCACATTCTGCCTCTTTGGTCGACTGAGCGCCCGCACGTCCGTTTCATGGGTT
131 GATCCTCAGCTTACACATTCTGCCTCTTCGGTAGACTGAGCGCCCGCACGCCCGTTTCATGGGTT
* * * * *
12968917 GGCTTAGGGATAGGGAGTTCATTCCATGTCTATGCCCCAGCCGAACTGAGGTTGTGGTAGCGGGA
196 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGAACTGAGGTTGTGGCAGCGAGA
* * * * *
12968982 CCGGTAGCACGCAGAGGGGACCAGGTCGATCCCCTGCTTACGTATTATACCTCTTCGGTTGGCTC
261 CCGATAGCACACAGAGGGGACCAGCTCGATCCCCGGCTTACGCATTATACCTCTTCGGTTGGCTC
*
12969047 AGCACCCGCACGCTCA
326 AGCACCCGCACCCTCA
*
12969063 TTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
1 TTTCGTGGGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAG
12969108 ATCGGATCGG
Statistics
Matches: 333, Mismatches: 48, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
340 4 0.01
341 91 0.27
342 36 0.11
343 201 0.60
344 1 0.00
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (341 bp):
TTTCGTGGGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCGGACCGGACCAAGGGTTGAGACAGCAAGATTGATAGCACGTAGGAGGGACCGGGCC
GATCCTCAGCTTACACATTCTGCCTCTTCGGTAGACTGAGCGCCCGCACGCCCGTTTCATGGGTT
GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGAACTGAGGTTGTGGCAGCGAGA
CCGATAGCACACAGAGGGGACCAGCTCGATCCCCGGCTTACGCATTATACCTCTTCGGTTGGCTC
AGCACCCGCACCCTCA
Found at i:12969269 original size:26 final size:26
Alignment explanation
Indices: 12969239--12969291 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12969229 GTTGGCTTAG
12969239 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12969265 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12969291 G
1 G
12969292 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12976414 original size:26 final size:26
Alignment explanation
Indices: 12976374--12976431 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 26
12976364 CATCAGTTGG
12976374 CTAAGGCATACGGAGTTCATT-CCATGT
1 CTAA-GCATACGGAGTTCATTCCCA-GT
12976401 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
12976427 CTAAG
1 CTAAG
12976432 ATCAGACTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
26 23 0.77
27 7 0.23
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:12978107 original size:158 final size:158
Alignment explanation
Indices: 12977905--12978321 Score: 430
Period size: 158 Copynumber: 2.6 Consensus size: 158
12977895 GTATCAGGCC
** * * * * *
12977905 GATCCCCGGCTTGTGCATTTTGCCTTTCCGATCGGCTGAGCGCCCGCACGC-CTGCTTCGTGGGT
1 GATCCCCGGCTTACGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTC-GTTTCGTGGGT
* * * *
12977969 TGGCTTAGGCATAGGGAGTTCATTCCAAGTC-AAGCCCCTGTA-GGACCAAGGGTTGTGGTAGTG
65 TGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCTG-ACGGACCAAGGGTTGTAGCAGTA
* *
12978032 GGATC-AGTAGCACGTAGAGGGCAACCGGGCA
129 GGATCGA-CAACACGTAG-GGGCAACCGGGCA
* * * * * * *
12978063 GATCCCTGTCTTGCGCATTATGCCTCTTCGACCTACTGAGCGCCCGCATGCTCGTTTCATGGGTT
1 GATCCCCGGCTTACGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * * ** *
12978128 GACTTATGCATACGCAGTTCATTCCCAGTCTAAG-ATCTGACCGGACCGAGGGTTGTAGCAGTAG
66 GGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCTGA-CGGACCAAGGGTTGTAGCAGTAG
** *
12978192 GATCGACAACACGTAGGGGGGACCGGGCT
130 GATCGACAACACGTAGGGGCAACCGGGCA
* * ** *
12978221 GATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTACGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
12978286 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
66 GGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCC
12978322 GTAGTCAGGT
Statistics
Matches: 207, Mismatches: 46, Indels: 11
0.78 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 171 0.83
159 34 0.16
160 1 0.00
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.25
Consensus pattern (158 bp):
GATCCCCGGCTTACGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCTGACGGACCAAGGGTTGTAGCAGTAGG
ATCGACAACACGTAGGGGCAACCGGGCA
Found at i:12978502 original size:28 final size:29
Alignment explanation
Indices: 12978462--12978520 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
12978452 GGGTTGACTT
*
12978462 AGGCATTACGGAGTT-CATCCCCAGTCTA
1 AGGCATTACGGAGTTCCATCCCCAATCTA
*
12978490 AGGCATATA-GGAGTTCCATTCCCAATCTA
1 AGGCAT-TACGGAGTTCCATCCCCAATCTA
12978519 AG
1 AG
12978521 ATCAGACCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 12 0.44
29 15 0.56
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (29 bp):
AGGCATTACGGAGTTCCATCCCCAATCTA
Found at i:12979017 original size:26 final size:26
Alignment explanation
Indices: 12978980--12979032 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12978970 GTTGGCTTAG
*
12978980 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
12979006 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12979032 G
1 G
12979033 ATTTTGAGCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12979740 original size:26 final size:26
Alignment explanation
Indices: 12979702--12979754 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12979692 GTTGACTTAG
12979702 GCATATAGGGTTCATCCCCAGTCTAA
1 GCATATAGGGTTCATCCCCAGTCTAA
*
12979728 GCATAT-GGAGTTCATTCCCAGTCTAA
1 GCATATAGG-GTTCATCCCCAGTCTAA
12979754 G
1 G
12979755 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATAGGGTTCATCCCCAGTCTAA
Found at i:12979961 original size:158 final size:157
Alignment explanation
Indices: 12979725--12980312 Score: 414
Period size: 159 Copynumber: 3.7 Consensus size: 157
12979715 ATCCCCAGTC
* *
12979725 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGACAGCAGGATCG
* ** * * * * * * *
12979790 GCAGCACGTAGGGGTGACTGGACCGATCCTCGACTTACGCATTCTGCGTCTCCG-GTCGGCTGAG
66 ACAGCACCAAGGGG-GACCGGACCGATCCCCGACTTACACATTATGCCTATCCGACT-GGCTGAG
* * *
12979854 CACCCGCACGCTCGTTTCGTGGGTCCGTT
129 CACCCGCACGCCCATTTCGTGGGTCCGCT
*
12979883 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGA-CGAGGGTTGCGACAGTAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGACAGCAGGATCG
* * *
12979947 ACAGCACACAAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTATCCGACTGGCTGAGC
66 ACAGCAC-CAAGGGGGACCGGACCGATCCCCGACTTACACATTATGCCTATCCGACTGGCTGAGC
* * **
12980012 GCCCGCATGCCCATTTCGTGGGTTGGCT
130 ACCCGCACGCCCATTTCGTGGGTCCGCT
* * ** * ** * * * *
12980040 TAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCGGGATC
1 TAAGCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCAGATCGAGGGTTGCGACAGCAGGATC
* ** * * * * * * * * * * *
12980104 GACAGCATGCAGAGAAGGATCGGGCCAATCCCCGGCTT-CTGCGTTATGCCTCTCTGGCCGGCTC
65 GACAGCA-CCA-AGGGGGACCGGACCGATCCCCGACTTAC-ACATTATGCCTATCCGACTGGCTG
** * * * *
12980168 AGTGCCCGAACGCTCGTTTCGTGGGT-TGACT
127 AGCACCCGCACGCCCATTTCGTGGGTCCG-CT
* * * * * ** * * *
12980199 TAGGTATACGGAGTTCATTCCCAGTCTCAGATTAGACTGGATCGAGGGTTGCGGCAGTAGGATCA
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGACAGCAGGATCG
* * * * * *
12980264 ATAGCACGCAGGGGGGACCGGGA-CGATCCTCGGCTTACGCATTCTGCCT
66 ACAGCAC-CAAGGGGGACC-GGACCGATCCCCGACTTACACATTATGCCT
12980313 TTTCGATCGG
Statistics
Matches: 339, Mismatches: 79, Indels: 24
0.77 0.18 0.05
Matches are distributed among these distances:
156 3 0.01
157 116 0.34
158 99 0.29
159 118 0.35
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (157 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGACAGCAGGATCG
ACAGCACCAAGGGGGACCGGACCGATCCCCGACTTACACATTATGCCTATCCGACTGGCTGAGCA
CCCGCACGCCCATTTCGTGGGTCCGCT
Found at i:12980370 original size:158 final size:158
Alignment explanation
Indices: 12979728--12980386 Score: 560
Period size: 158 Copynumber: 4.2 Consensus size: 158
12979718 CCCAGTCTAA
* *
12979728 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * * * * *
12979793 GCACGTAGGGGTGA-CTGGACCGATCCTCGACTTACGCATTCTGCGTCTCCGGTCGGCTGAGCAC
66 GCACGCAGGGGGGACCGGGA-CGATCCCCGGCTTACGCATTATGCCTTTCCGATCGGCTGAGCGC
* ** * *
12979857 CCGCACGCTCGTTTCGTGGGTCCGTTTAA
130 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
* *
12979886 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGA-CGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATCGACA
* * * * * *
12979950 GCACACAAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTATCCGA-CTGGCTGAGCGC
66 GCACGCAGGGGGGACCGGGACGATCCCCGGCTTACGCATTATGCCTTTCCGATC-GGCTGAGCGC
* * * *
12980014 CCGCATGCCCATTTCGTGGGTTGGCTTAG
130 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * *
12980043 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGCAGCGGGATCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGATCGAGGGTTGCGACAGCAGGATCGA
* ** * * * * * * ** *
12980106 CAGCATGCAGAGAAGGATCGGGCCAATCCCCGGCTT-CTGCGTTATGCCTCTCTGGCCGGCTCAG
64 CAGCACGCAG-GGGGGACCGGGACGATCCCCGGCTTAC-GCATTATGCCTTTCCGATCGGCTGAG
* * *
12980170 TGCCCGAACGCTCGTTTCGTGGGTTGACTTAG
127 CGCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * * *
12980202 GTATACGGAGTTCATTCCCAGTCTCAGATTAGACTGGATCGAGGGTTGCGGCAGTAGGATCAATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATCGACA
* * * * **
12980267 GCACGCAGGGGGGACCGGGACGATCCTCGGCTTACGCATTCTGCCTTTTCGATCGGCTGAGTGTT
66 GCACGCAGGGGGGACCGGGACGATCCCCGGCTTACGCATTATGCCTTTCCGATCGGCTGAGCGCC
*
12980332 CGTGCGCTCGTTTCGTGGGTTGGCTTCA-
131 CGTACGCTCGTTTCGTGGGTTGGCTT-AG
* *
12980360 GAATATGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
12980387 CATAAGAGTT
Statistics
Matches: 397, Mismatches: 91, Indels: 26
0.77 0.18 0.05
Matches are distributed among these distances:
156 4 0.01
157 117 0.29
158 153 0.39
159 119 0.30
160 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGGGGGGACCGGGACGATCCCCGGCTTACGCATTATGCCTTTCCGATCGGCTGAGCGCC
CGTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12980603 original size:26 final size:26
Alignment explanation
Indices: 12980567--12980619 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12980557 CTTTACTTAG
*
12980567 GCATACGGAGTTCATCTCCGGTCTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
* *
12980593 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
12980619 G
1 G
12980620 ATTGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAGTCTAA
Found at i:12980937 original size:26 final size:26
Alignment explanation
Indices: 12980908--12980960 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12980898 GTTGGCTTAG
*
12980908 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12980934 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12980960 G
1 G
12980961 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12982034 original size:155 final size:157
Alignment explanation
Indices: 12981655--12982098 Score: 395
Period size: 158 Copynumber: 2.8 Consensus size: 157
12981645 CCCAGTATAA
* * * *
12981655 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAT-CAGATCAAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGG-TCCAGA-CCAGGGTTGTGGCAGAAGGATCGAC
* * * *
12981719 AGCACGTACGGGGCACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCTGCTGAACGC
64 AGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCTGCTCAACGC
* * *
12981784 CCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CCGCACACCCGATTCATGGGTTGACTTAG
* * ** * ** **
12981813 GCATAGGGAGTACATT-CCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGTCGGA-C-A
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGTCCAGACC-AGGGTTGTGGCAGAAGGATCGA
* ** * * *
12981874 GCAGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTTGCGCGTTAC-GCCTCT-CGGCC-GCTCA
63 -CAGCACGCAG-GGGGGACCGGGCCGATCCCCAGCTTGCGCATT-CTACCTCTCCGACCTGCTCA
* * * *
12981936 GCGCCCGCACACTC-ATTCGTTGGTTGACTTAG
125 ACGCCCGCACACCCGATTCATGGGTTGACTTAG
*
12981968 GCATACGAAGTTCATTCCCAGTCTAAGATCGGTCCAGACCAGGGTTGTGGCAGAAGGATCGACAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGTCCAGACCAGGGTTGTGGCAGAAGGATCGACAG
* * * * * * *
12982033 CATGCAGGGGGGACCAGGCCGTTGCCCGACCTTGCGCATTCTACCTCTCCG-CCGGCTGAACGCC
66 CACGCAGGGGGGACCGGGCCGAT-CCCCAGCTTGCGCATTCTACCTCTCCGACCTGCTCAACGCC
12982097 CG
130 CG
12982099 TTTCGTGGGT
Statistics
Matches: 221, Mismatches: 50, Indels: 32
0.73 0.17 0.11
Matches are distributed among these distances:
154 32 0.14
155 68 0.31
156 32 0.14
157 17 0.08
158 69 0.31
159 3 0.01
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGTCCAGACCAGGGTTGTGGCAGAAGGATCGACAG
CACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCTGCTCAACGCCC
GCACACCCGATTCATGGGTTGACTTAG
Found at i:12982156 original size:26 final size:25
Alignment explanation
Indices: 12982117--12982168 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
12982107 GTTGGCTTAG
12982117 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
* *
12982143 GCATACGGATTTCATTCTAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
12982168 G
1 G
12982169 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:12983772 original size:26 final size:27
Alignment explanation
Indices: 12983733--12983787 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
12983723 GGTTTGACTT
*
12983733 AGCATATGGAGTTCA-TCCCTAGTCTA
1 AGCAAATGGAGTTCATTCCCTAGTCTA
*
12983759 AGCAAATGGCGTTCATTCCCTAGTCTA
1 AGCAAATGGAGTTCATTCCCTAGTCTA
12983786 AG
1 AG
12983788 ATCGGACGCG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (27 bp):
AGCAAATGGAGTTCATTCCCTAGTCTA
Found at i:12984280 original size:26 final size:26
Alignment explanation
Indices: 12984244--12984296 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12984234 GTTGGCTTAG
12984244 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
12984270 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
12984296 G
1 G
12984297 ATTAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:12984626 original size:26 final size:26
Alignment explanation
Indices: 12984596--12984651 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
12984586 TGGGTTGACT
12984596 TAAGCATAC-AGAGTTCATCCCCAGTC
1 TAAGCATACGA-AGTTCATCCCCAGTC
*
12984622 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
12984648 TAAG
1 TAAG
12984652 ATCAAACCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGTC
Found at i:12985122 original size:157 final size:156
Alignment explanation
Indices: 12984625--12985123 Score: 422
Period size: 157 Copynumber: 3.2 Consensus size: 156
12984615 CCCAGTCTAA
* * *
12984625 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCAGCAGCAGGATC-AGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGCAGCAGCAGGATCGA-C
* * * * ** *
12984689 AGCACGCAGGAGAGATCAGACCGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCAC
65 AGCACACAAGAG-GATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
** * * *
12984754 CCATACACTCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTT-GCTTTG
* ** * *
12984783 GCATA-GGAAGTTCATT-CCATGTCTAAG-TCACAGCCAGACTGAGGGTTGTGGCAGCGGGACCG
1 GCATACGG-AGTTCATTCCCA-GTCTAAGATCA-AACCAGACTGAGGGTTGCAGCAGCAGGATCG
* * * * * * * * * ** *
12984845 GCAGCACGCAAAAGGGGACCGGGCCTATCCCTGGCTTGTGCATTATGCCTCTTCGGTCGGCTCA-
63 ACAGCA--CACAAGAGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAG
12984909 -GCCCGCCACGCTCGTTT-GTGGGTTGACTTAT-
126 CGCCCG-CACGCTCGTTTCGTGGGTTG-CTT-TG
* * *** * *
12984940 GCATACGGATTTCATTCCCAATCTAAGATTGGATCAGACTGAGGGTTGCAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGCAGCAGCAGGATCGACA
* * *
12985005 GCACACACGAGGATCGGGCCGATCCCCGGTTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCC
66 GCACACAAGAGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
* *
12985070 GCATGCTCATTTCGTGGGTTAGCTTTG
131 GCACGCTCGTTTCGTGGGTT-GCTTTG
12985097 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
12985124 CATACGGTGT
Statistics
Matches: 260, Mismatches: 63, Indels: 37
0.72 0.17 0.10
Matches are distributed among these distances:
155 42 0.16
156 14 0.05
157 101 0.39
158 64 0.25
159 35 0.13
160 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGCAGCAGCAGGATCGACA
GCACACAAGAGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGCTTTG
Found at i:12989677 original size:26 final size:26
Alignment explanation
Indices: 12989637--12989694 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 26
12989627 CATCAGTTGG
12989637 CTAAGGCATACGGAGTTCATT-CCATGT
1 CTAA-GCATACGGAGTTCATTCCCA-GT
12989664 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
12989690 CTAAG
1 CTAAG
12989695 ATCAGACTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
26 23 0.77
27 7 0.23
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:12991388 original size:158 final size:158
Alignment explanation
Indices: 12991137--12991583 Score: 411
Period size: 158 Copynumber: 2.8 Consensus size: 158
12991127 TTGCGGTAGC
* * * * * ** * * *
12991137 AGGATCGACAGCACGCAGGGGTATCAGGTC-GATCCCCGGCTTGTGCATTTTGCCTTTCCGATCG
1 AGGATCGACAACACGCAGGGGCAACCGGGCAGATCCCCGGCTTACGCATTATGCCTCTCCGACCG
* * * *
12991201 GCTGAGCGCCCGCACGC-CTGCTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTC-AA
66 ACTGAGCGCCCGCACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAA
* *
12991264 GCCCCTGTA-GGACCAAGGGTTGTGGTAGT
130 GCCCCTG-ACGGACCAAGGGTTGTAGCAGT
* * * * * * * *
12991293 GGGATC-AGTAGCACGTAGAGGGCAACCGGGCAGATCCCTGTCTTGCGCATTATGCCTCTTCGAC
1 AGGATCGA-CAACACGCAG-GGGCAACCGGGCAGATCCCCGGCTTACGCATTATGCCTCTCCGAC
* * * * * * *
12991357 CTACTGAGCGCTCGCATGCTCGTTTCATGGGTTGACTTATGCATACGCAGTTCATTCCCAGTCTA
64 CGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTA
** *
12991422 AG-ATCTGACCGGACCGAGGGTTGTAGCAGT
129 AGCCCCTGA-CGGACCAAGGGTTGTAGCAGT
** * * *
12991452 AGGATCGACAACACGCAGGGGGGACCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCCGATCG
1 AGGATCGACAACACGCAGGGGCAACCGGGCAGATCCCCGGCTTACGCATTATGCCTCTCCGACCG
** * * *
12991517 GTTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 ACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAG
12991582 CC
131 CC
12991584 GTAGTCAGGT
Statistics
Matches: 226, Mismatches: 56, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
155 1 0.00
156 13 0.06
157 9 0.04
158 169 0.75
159 33 0.15
160 1 0.00
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
AGGATCGACAACACGCAGGGGCAACCGGGCAGATCCCCGGCTTACGCATTATGCCTCTCCGACCG
ACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAG
CCCCTGACGGACCAAGGGTTGTAGCAGT
Found at i:12991754 original size:26 final size:26
Alignment explanation
Indices: 12991725--12991777 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12991715 GTTGACTTAG
* *
12991725 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
12991751 GCATATAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
12991777 G
1 G
12991778 ATCAGACCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:12992058 original size:159 final size:159
Alignment explanation
Indices: 12991894--12992256 Score: 394
Period size: 159 Copynumber: 2.3 Consensus size: 159
12991884 CGCCCATTTT
* * * * * *
12991894 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTTA-G-ACCGAGGGTTGT
1 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CATAG-AACGTACCAAAGGTTAT
** * * * *
12991957 GGCAGTGGGACCGGCAGCATGC-AGAGGGGGACCGAGCCGATCCCTGGCTTGCGCATTATGCCTC
64 GGCAGCAGGACCGACAGCACGCAAGA-GGGGACCGAGCCGATCCCCGGCTTGCGCATGATGCCTC
* * * *
12992021 TTCGGCCAGCTCAATGCCCGCACGCTTGTCTC
128 TCCGGCCAGCTCAACGACCGCACGCTCGTCTC
* * * *
12992053 GTGGGTTGACTTATGCATTCGGAGTTCATTCCCA-GTCTAAG-ATTGAACCGTACCAAAGGTTAT
1 GTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCATAGAA-CGTACCAAAGGTTAT
* * * *
12992116 GGTAGCAGGATCGACAGCACGCAAGAGGGGACCGGGCCGATCCCCGGCTTGCGCATGCTGCCTCT
64 GGCAGCAGGACCGACAGCACGCAAGAGGGGACCGAGCCGATCCCCGGCTTGCGCATGATGCCTCT
* * * *
12992181 CCGGCCGGCTGAGCGACCGCACGCTCGTTTC
129 CCGGCCAGCTCAACGACCGCACGCTCGTCTC
12992212 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
1 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
12992257 CGAAGTTCAT
Statistics
Matches: 165, Mismatches: 32, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
156 1 0.01
157 2 0.01
158 4 0.02
159 150 0.91
160 8 0.05
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAGAACGTACCAAAGGTTATGG
CAGCAGGACCGACAGCACGCAAGAGGGGACCGAGCCGATCCCCGGCTTGCGCATGATGCCTCTCC
GGCCAGCTCAACGACCGCACGCTCGTCTC
Found at i:12992263 original size:26 final size:26
Alignment explanation
Indices: 12992226--12992278 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12992216 GTTGGCTTAG
*
12992226 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
12992252 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12992278 G
1 G
12992279 ATTTTGAGCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12992985 original size:26 final size:26
Alignment explanation
Indices: 12992947--12992999 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12992937 GTTGACTTAG
12992947 GCATATAGGGTTCATCCCCAGTCTAA
1 GCATATAGGGTTCATCCCCAGTCTAA
*
12992973 GCATAT-GGAGTTCATTCCCAGTCTAA
1 GCATATAGG-GTTCATCCCCAGTCTAA
12992999 G
1 G
12993000 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATAGGGTTCATCCCCAGTCTAA
Found at i:12993219 original size:158 final size:157
Alignment explanation
Indices: 12992970--12993631 Score: 528
Period size: 158 Copynumber: 4.2 Consensus size: 157
12992960 ATCCCCAGTC
* *
12992970 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGACAGCAGGATCG
* * * * * * * * *
12993035 GCAGCACG-TAGGGGTGACTGGACCGATCCTCGACTTACGCATTCTGCGTCTCCGGTCGGCTGAG
66 ACAGCACGCAAGGGG-GACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGACGGCTGAG
* *
12993099 CACCCGCACGCTCGTTTCGTGGGTCCGTT
130 CGCCCGCACGCTCGTTTCGTGGGT-CGCT
* *
12993128 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGACAGTAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGACAGCAGGATCG
* * * *
12993193 ACAGCACACAAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTATCC-GACTGGCTGAG
66 ACAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGAC-GGCTGAG
* * * *
12993257 CGCCCGCATGCCCATTTCGTGGGTTGGCT
130 CGCCCGCACGCTCGTTTCGTGGG-TCGCT
* * ** * ** * * * *
12993286 TAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCGGGATC
1 TAAGCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCAGATCGAGGGTTGCGACAGCAGGATC
* ** * * ** * * *
12993350 GACAGCATGCAGAGAAGGATCGGGCCAATCCCCGGCTT-CTGTGTTATGCCTCTCTGGCCGGCTT
65 GACAGCACGCA-AGGGGGACCGGGCCGATCCCCGGCTTAC-GCATTATGCCTCTCCGGACGGCTG
* * *
12993414 AGTGCCCGAACGCTCGTTTCGTGGGTTGACT
128 AGCGCCCGCACGCTCGTTTCGTGGGTCG-CT
* * * * * ** * * *
12993445 TAGGTATACGGAGTTCATTCCCAGTCTCAGATTAGACTGGATCGAGGGTTGCGGCAGTAGGATCA
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGACAGCAGGATCG
* * * * * *
12993510 ATAGCACGC-AGGGGGACCGGGACGATCCTCGGCTTACGCATTCTGCCTTTTC-GATCGGCTGAG
66 ACAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGA-CGGCTGAG
* ** ** *
12993573 TGTTCGTGCGCTCGTTTCGTGGGTTGGCT
130 CGCCCGCACGCTCGTTTCGTGGG-TCGCT
* * *
12993602 TCAGAATATGGAGTTCATT-CCATGTCTAAG
1 TAAGCATACGGAGTTCATTCCCA-GTCTAAG
12993632 CATACAGAGT
Statistics
Matches: 395, Mismatches: 96, Indels: 27
0.76 0.19 0.05
Matches are distributed among these distances:
156 4 0.01
157 83 0.21
158 186 0.47
159 117 0.30
160 5 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGACAGCAGGATCG
ACAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGACGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTCGCT
Found at i:12993851 original size:26 final size:26
Alignment explanation
Indices: 12993815--12993867 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12993805 CTTTACTTAG
*
12993815 GCATACGGAGTTCATCTCCGGTCTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
* *
12993841 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
12993867 G
1 G
12993868 ATTGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAGTCTAA
Found at i:12994186 original size:26 final size:26
Alignment explanation
Indices: 12994157--12994209 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12994147 GTTGGCTTAG
*
12994157 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12994183 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12994209 G
1 G
12994210 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12995290 original size:159 final size:158
Alignment explanation
Indices: 12994906--12995400 Score: 383
Period size: 159 Copynumber: 3.2 Consensus size: 158
12994896 CCCAGTATAA
* * * * * *
12994906 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAT-CAAATCAAGGGTTGCGACAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGG-TCCAGACCAAGGGTTGTGGCAGAAGGATCGAC
* * * *
12994970 AGCACGTAGGGGGCACCGGACCGATCCCCAGCCTGCACATTCTACCTCTCCGGCCTGCTGAGCGC
65 AGCACGCAGGGGGGACCGGACCGATCCCCAGCCTGCACATTCTACCTCTCCGGCCGGCTCAGCGC
* * *
12995035 CCGCACGCCCGTTTCATGGGTTGGCTTAG
130 CCGCACACCCATTTCATGGGTTGACTTAG
* * ** * ** * **
12995064 GCATAGGGAGTACATT-CCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGTCGGA-CAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGTCCAGACCAAGGGTTGTGGCAGAAGGATC-G
* * * ** * * * *
12995126 GCAGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTTGCGCGTTAC-GCCTCTCCGGCCGGCTCA
63 ACAGCACGCAG-GGGGGACCGGACCGATCCCCAGCCTGCACATT-CTACCTCTCCGGCCGGCTCA
* * *
12995190 GCGCCCGCACACTCATTTCGTTGGTTGACTTAG
126 GCGCCCGCACACCCATTTCATGGGTTGACTTAG
*
12995223 GCATACGAAGTTCATTCCCAGTCTAAGATCGGTCCAGACCAAGGGTTGTGGCAGAAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGTCCAGACCAAGGGTTGTGGCAGAAGGATCGACA
* * * * * * *
12995288 GCATGCAGGGGGGGACCAGG-CCGTTGCCC-GACTTGCGCATTCTACCTCTCCGGCCGGCTGAAC
66 GCACGCA-GGGGGGACC-GGACCGATCCCCAG-CCTGCACATTCTACCTCTCCGGCCGGCTCAGC
* *
12995351 GCCCG--------TTTCGTGGGTTGGCTTAG
128 GCCCGCACACCCATTTCATGGGTTGACTTAG
12995374 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
12995401 CATACGGATT
Statistics
Matches: 265, Mismatches: 58, Indels: 35
0.74 0.16 0.10
Matches are distributed among these distances:
150 3 0.01
151 38 0.14
157 4 0.02
158 50 0.19
159 162 0.61
160 8 0.03
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGTCCAGACCAAGGGTTGTGGCAGAAGGATCGACA
GCACGCAGGGGGGACCGGACCGATCCCCAGCCTGCACATTCTACCTCTCCGGCCGGCTCAGCGCC
CGCACACCCATTTCATGGGTTGACTTAG
Found at i:12995413 original size:26 final size:26
Alignment explanation
Indices: 12995374--12995426 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12995364 GTTGGCTTAG
12995374 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
12995400 GCATACGGATTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
12995426 G
1 G
12995427 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:12996627 original size:26 final size:26
Alignment explanation
Indices: 12996598--12996648 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
12996588 TTGGCTTAGG
12996598 CATACGGAGTTCATT-CCATGTCTAAC
1 CATACGGAGTTCATTCCCA-GTCTAAC
* *
12996624 CATATGGTGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
12996649 GATCTAACTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:12997475 original size:157 final size:154
Alignment explanation
Indices: 12997009--12997502 Score: 435
Period size: 157 Copynumber: 3.1 Consensus size: 154
12996999 CTAAGCAAAT
* * * * *
12997009 GGAGTTCATTCC-TAGTCTAAGATCAGACCGGATGGAGGGTTGCAACAGCAGGATCGGCAGCACG
1 GGAGTTCATTCCAT-GTCTAAGATCAGACCAGATCGAGGGTTGCGACAGTA-GATCGACAGCACG
* * * * * * * *
12997073 CAAGTGGGACTGGGCCGATCCCCGGCTTACGCATTCTACC-CTCCAACCGACTGAGCACCCGCAC
64 CAGGGGGGACTGGG-CGA-CCCCAGCTTATGCATTCTGCCTCTCCGA-CGGCTGAGCGCCCGCAC
* *
12997137 GCCCGTTTCGTGGGTTGGCTTAGGCATAG
126 GCTCGTTTCGTGGGTTGGCTTAGGCATAC
** * * * *
12997166 GGAGTTCATTCCATGTCTAAGCCCCAG-CCAGAACGAGGGTTGTGGCAGTGAGA-CTGATAGCAC
1 GGAGTTCATTCCATGTCTAAG-ATCAGACCAGATCGAGGGTTGCGACAGT-AGATC-GACAGCAC
* * * * * *
12997229 GCAGAGGGGGA-TCGGGCTGATCCCTGACTTATGCATTATGCCTATCCGATCGGCTCAGTGCCCG
63 GCAG-GGGGGACT-GGGC-GACCCCAG-CTTATGCATTCTGCCTCTCCGA-CGGCTGAGCGCCCG
* ** * *
12997293 CACGCTCATTTTTTGGGTTGACTTAGTCATAC
123 CACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* *
12997325 GGAGTTCATTCCCA-GTCTAAGATTAGACCAG-TCTGAGTGTTGCGACAGTAGCATCGACAGCAC
1 GGAGTTCATT-CCATGTCTAAGATCAGACCAGATC-GAGGGTTGCGACAGTAG-ATCGACAGCAC
* * *
12997388 GCAGGGGGGACTGGGTCGACCCCAGCTTGTGCATTCTGCCTCTCTGACGGGCTGAGCGCCCACAC
63 GCAGGGGGGACTGGG-CGACCCCAGCTTATGCATTCTGCCTCTCCGAC-GGCTGAGCGCCCGCAC
*
12997453 GCTCGTTTCGTGGGTTGGCTTAGGCATAT
126 GCTCGTTTCGTGGGTTGGCTTAGGCATAC
12997482 GGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
12997503 CATATGGAGT
Statistics
Matches: 264, Mismatches: 55, Indels: 36
0.74 0.15 0.10
Matches are distributed among these distances:
156 5 0.02
157 122 0.46
158 47 0.18
159 86 0.33
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (154 bp):
GGAGTTCATTCCATGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGTAGATCGACAGCACGCA
GGGGGGACTGGGCGACCCCAGCTTATGCATTCTGCCTCTCCGACGGCTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGGCTTAGGCATAC
Found at i:12997512 original size:26 final size:26
Alignment explanation
Indices: 12997476--12997528 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12997466 GTTGGCTTAG
12997476 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
12997502 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
12997528 G
1 G
12997529 ATTAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Done.