Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 91 of 402
Found at i:12997858 original size:26 final size:26
Alignment explanation
Indices: 12997828--12997883 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
12997818 TGGGTTGACT
12997828 TAAGCATAC-AGAGTTCATCCCCAGTC
1 TAAGCATACGA-AGTTCATCCCCAGTC
*
12997854 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
12997880 TAAG
1 TAAG
12997884 ATCAAACCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGTC
Found at i:12998336 original size:158 final size:157
Alignment explanation
Indices: 12997857--12998358 Score: 444
Period size: 158 Copynumber: 3.2 Consensus size: 157
12997847 CCCAGTCTAA
* * * * *
12997857 GCATACGAAGTTCATTCCCA-GTCTAAGATCA-AACCGGACCGAGGGTTGCAGCAGCAGGATC-A
1 GCATACGGAGTTCATTCCCATATCTAAG-TCACAGCCAGACTGAGGGTTGCAGCAGCAGGATCGA
* * * **
12997919 GCAGCACGCAGGGGAGATCAGACCGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
65 -CAGCACGCAGAGG-GATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* * * * *
12997984 ACCCGTACACTCGTTTCATGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTT-GCTTTG
* * ** * * *
12998015 GCATAGGGAGTTCATT-CCATGTCTAAGTCACAGCCAGACTGAGGGTTGTGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCCATATCTAAGTCACAGCCAGACTGAGGGTTGCAGCAGCAGGATCGAC
* * * * * * * ** *
12998079 AGCACGCAAAAGGGGACCGGGCCTATCCCTGGCTTGTGCATTATGCCTCTTCGGTCGGCTCAGCG
66 AGCACGC-AGA-GGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
*
12998144 CCCGCACGCTCGTTTTGTGGGTTGACTTAT-
129 CCCGCACGCTCGTTTCGTGGGTTG-CTT-TG
* *** * *
12998174 GCATACGGATTTCATTCCCA-ATCTAAGATTGGA-TCAGACTGAGGGTTGCAGCAGTAGGATCGA
1 GCATACGGAGTTCATTCCCATATCTAAG-TCACAGCCAGACTGAGGGTTGCAGCAGCAGGATCGA
* * *
12998237 CAGCACACACGAGGGATCGGGCCGATCCCCGGTTTGCGCATTCTGCCTCTCCGACCGACTGAGCG
65 CAGCACGCA-GAGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* *
12998302 CCCGCATGCTCATTTCGTGGGTTAGCTTTG
129 CCCGCACGCTCGTTTCGTGGGTT-GCTTTG
*
12998332 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCATATCTAAG
12998359 CATACGGTGT
Statistics
Matches: 269, Mismatches: 62, Indels: 26
0.75 0.17 0.07
Matches are distributed among these distances:
157 10 0.04
158 140 0.52
159 112 0.42
160 7 0.03
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCATATCTAAGTCACAGCCAGACTGAGGGTTGCAGCAGCAGGATCGAC
AGCACGCAGAGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGCTTTG
Found at i:12999084 original size:26 final size:26
Alignment explanation
Indices: 12999054--12999106 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12999044 GTTGACTTAG
*
12999054 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
12999080 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12999106 G
1 G
12999107 ATAGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12999458 original size:25 final size:25
Alignment explanation
Indices: 12999423--12999471 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
12999413 TGGTTTAGGC
12999423 ATACGAAGTTCATTCCATGTCTAAGT
1 ATACGAAGTTCATTCCA-GTCTAAGT
12999449 ATAC-AAGTTCATTCCAGTCTAAG
1 ATACGAAGTTCATTCCAGTCTAAG
12999472 ATTGAACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 7 0.30
25 12 0.52
26 4 0.17
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (25 bp):
ATACGAAGTTCATTCCAGTCTAAGT
Found at i:12999675 original size:26 final size:26
Alignment explanation
Indices: 12999639--12999691 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12999629 GTTGACTTAG
* *
12999639 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
12999665 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
12999691 G
1 G
12999692 ATTGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:12999902 original size:21 final size:21
Alignment explanation
Indices: 12999878--12999923 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
12999868 TTATGGCAAC
* *
12999878 GGGACCGGTAGCACGCAGAGG
1 GGGACCGGTAGCACACAGAGA
12999899 GGGACCGGTAGCACACAGAGA
1 GGGACCGGTAGCACACAGAGA
12999920 GGGA
1 GGGA
12999924 TCGGGCCGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.28, C:0.22, G:0.46, T:0.04
Consensus pattern (21 bp):
GGGACCGGTAGCACACAGAGA
Found at i:13000418 original size:26 final size:26
Alignment explanation
Indices: 13000361--13000418 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
13000351 CGTGGGTTGA
*
13000361 CTTAGGCATACAGAGTTCATCCCCAG
1 CTTAAGCATACAGAGTTCATCCCCAG
* * *
13000387 -TCTAAGCATACGGAGTTCATTCCTAG
1 CT-TAAGCATACAGAGTTCATCCCCAG
13000413 CTTAAG
1 CTTAAG
13000419 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
25 1 0.04
26 24 0.92
27 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAAGCATACAGAGTTCATCCCCAG
Found at i:13000621 original size:26 final size:26
Alignment explanation
Indices: 13000585--13000637 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13000575 GTTGGCTTAG
13000585 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
13000611 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
13000637 G
1 G
13000638 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:13001337 original size:26 final size:26
Alignment explanation
Indices: 13001308--13001360 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13001298 GTTGACTTAG
*
13001308 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
*
13001334 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
13001360 G
1 G
13001361 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:13001808 original size:158 final size:157
Alignment explanation
Indices: 13001334--13001827 Score: 519
Period size: 158 Copynumber: 3.1 Consensus size: 157
13001324 CCTAGTCTAA
* * * *
13001334 GCATACAGAGTTCATTCCTAGTCTAAGATCGGACTGGATCGAGGGTTGCGACAGCAGTATCGACA
1 GCATACAGAGTTCATTCC-AGTTTAAGATCGGACTGGATCGAGGGTTGTGGCAGCAGGATCGACA
* * ** * * * *
13001399 GCACGTAGGGTGGACCGGACCGATCCCTAACTTGCGCATTCTGCCTC-TCTGGCCGACTGAGCGC
65 GCACGCAGGGGGGACCGGACCGATCCCTGGCTTGAGCATTCTGCCTCTTC-GGCTGGCTAAGCGC
13001463 CCACACGC-CTGTTTCATGGGTTGGCTTAG
129 CCACACGCTC-GTTTCATGGGTTGGCTTAG
** * ** * * *
13001492 GCATAGGGAGTTCATTCCACGTTTATG-TCCCAGCTGGATCGAGAGTTGTGGCAGCGGGACCGAC
1 GCATACAGAGTTCATTCCA-GTTTAAGATCGGA-CTGGATCGAGGGTTGTGGCAGCAGGATCGAC
* ** * * * *
13001556 AGCACGCAGAGGGGGATCGGGTCGATCCTTGGCTTGAGCATTATGCCTCTCCGGCTGGCTCAGCG
64 AGCACGCAG-GGGGGACCGGACCGATCCCTGGCTTGAGCATTCTGCCTCTTCGGCTGGCTAAGCG
* * * * *
13001621 CCCGCATGCTCATTTCGTGGGTTGACTTAG
128 CCCACACGCTCGTTTCATGGGTTGGCTTAG
* * * *
13001651 GCATACAAAGTTCATTCACAGTTTAAGATTGGACCGGATCGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACAGAGTTCATTC-CAGTTTAAGATCGGACTGGATCGAGGGTTGTGGCAGCAGGATCGACA
* * *
13001716 GTACGCAGGGGGGACCGGACC-AGTCCCTGGCTTGTGCATTCTGCCTCTTCGGCTGGCAAAGCGC
65 GCACGCAGGGGGGACCGGACCGA-TCCCTGGCTTGAGCATTCTGCCTCTTCGGCTGGCTAAGCGC
*
13001780 CCATACGCTCGTTTCATGGGTTGGCTTAG
129 CCACACGCTCGTTTCATGGGTTGGCTTAG
*
13001809 GCATACAGAGTTGATTCCA
1 GCATACAGAGTTCATTCCA
13001828 TGTCTAAGCA
Statistics
Matches: 267, Mismatches: 61, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
157 7 0.03
158 137 0.51
159 117 0.44
160 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCAGTTTAAGATCGGACTGGATCGAGGGTTGTGGCAGCAGGATCGACAG
CACGCAGGGGGGACCGGACCGATCCCTGGCTTGAGCATTCTGCCTCTTCGGCTGGCTAAGCGCCC
ACACGCTCGTTTCATGGGTTGGCTTAG
Found at i:13001839 original size:26 final size:26
Alignment explanation
Indices: 13001809--13001861 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13001799 GTTGGCTTAG
* *
13001809 GCATACAGAGTTGATTCCATGTCTAA
1 GCATACAGAGTTCATTCCACGTCTAA
* *
13001835 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACAGAGTTCATTCCACGTCTAA
13001861 G
1 G
13001862 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCACGTCTAA
Found at i:13002206 original size:26 final size:26
Alignment explanation
Indices: 13002176--13002228 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13002166 GTTGACTTAG
*
13002176 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
13002202 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13002228 G
1 G
13002229 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13002714 original size:26 final size:26
Alignment explanation
Indices: 13002678--13002730 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13002668 GTTGGCTTAG
*
13002678 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13002704 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13002730 G
1 G
13002731 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13002925 original size:26 final size:25
Alignment explanation
Indices: 13002887--13002938 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
13002877 GTTGACTTGG
*
13002887 GCATACGAGTTCATCCCCAGTCTAA
1 GCATACGAGTTCATCCCCAATCTAA
*
13002912 GCATACGGAGTTCATTCCCAATCTAA
1 GCATAC-GAGTTCATCCCCAATCTAA
13002938 G
1 G
13002939 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (25 bp):
GCATACGAGTTCATCCCCAATCTAA
Found at i:13003279 original size:26 final size:26
Alignment explanation
Indices: 13003229--13003281 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13003219 GTTGGCTTAG
*
13003229 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
13003255 GCATACAGAGTTGATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
13003281 G
1 G
13003282 ACCAGAACGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:13003467 original size:26 final size:26
Alignment explanation
Indices: 13003438--13003490 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13003428 GTTGACTTAG
*
13003438 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13003464 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13003490 G
1 G
13003491 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13003758 original size:552 final size:551
Alignment explanation
Indices: 13002593--13003824 Score: 1585
Period size: 552 Copynumber: 2.2 Consensus size: 551
13002583 AGCACGTAAG
* * * *
13002593 GGGGGATCGGGTC-AGTCCTCGGCTTGTGCATTCTACCTCTCCGGTTGGCTGAGCACCCGCACGC
1 GGGGGATCGGGTCGA-TCCTCGACTTGTGCATTCTGCCTCTCCGGCTGGTTGAGCACCCGCACGC
*
13002657 TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCC
65 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCC
* * * ** *
13002722 CAGTCTAAGATCAGATCGAACTGAGGGTTGCAACAATAGGACCAGCAGCAAGATCGACAACACGC
130 CAATCTAAGACCAGAACGAACCAAGGGTTGCAACAACAGGACCAGCAGCAAGATCGACAACACGC
* * **
13002787 AGGGGGGATCGGGCCGATCCCCAACTTTTGCATTCTGCCTCTCCAGCTGGCCTGTCCAGTCGGTT
195 AGGGGGGACCAGGCCGATCCCCAACTTTTGCATTCTGCCTCTCCAGCTGGCCTGTCCAGTCGGAA
* * * * *
13002852 GAGCATCCACATGCTTGTTTTGTGGGTTGACTTGGGCATACGAGTTCATCCCCAGTCTAAGCATA
260 GAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATCCCCAGTCTAAGCATA
* * *
13002917 CGGAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACA
325 CGAAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTATGGCAGCAGGATCGACAGCACA
* * * * * * *
13002982 CATGGGGGACCGGGCTGATCCTCGACTTGCGCATTCTACCTCTTCGGCTGACTGAGCGCCCGTAT
390 CAGGGGGGACCGGGCCGATCCCCGACTTGAGCATTCTACCTCTCCGGCTGACTGAGCACCAGTAT
* * *
13003047 GCCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCGATCGAAAAAA
455 GCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCGAGCCAAAAAA
* * * *
13003112 GGGTTGTGGCAGCGGGACCGACAGAATGTGGA
520 GGGTTGTGGCAGCGAGACCGACAAAAAGTAGA
* * * * *
13003144 GAGGGATCAGGCCGATCCTCGACTTATGCATTCTGCCTCTCCGGCTGGTTGAGCGCCCGCACGCT
1 GGGGGATCGGGTCGATCCTCGACTTGTGCATTCTGCCTCTCCGGCTGGTTGAGCACCCGCACGCT
* *
13003209 CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTGATTCCC
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCC
* ** * * * *
13003274 AATCTAAGACCAGAACGGACCAAGGGTTGGGACAGCAGGACCAGCAGCAGGATC-AGTAGCACGC
131 AATCTAAGACCAGAACGAACCAAGGGTTGCAACAACAGGACCAGCAGCAAGATCGA-CAACACGC
** * * *
13003338 AGGGGGGACCAGGCCGATCCTTAACTTTTGCATTCTGCCTCTCC-GGTCGGCCTGTCCGGTTGGA
195 AGGGGGGACCAGGCCGATCCCCAACTTTTGCATTCTGCCTCTCCAGCT-GGCCTGTCCAGTCGGA
**
13003402 AGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
259 AGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATCCCCAGTCTAAGCA
* * ** * **
13003467 TACGAAGTTCATTCCCAGTGTAAGATCGAACTGGACCGAGGGTTATGGCAGCAGGGTCGGTAGCA
323 TACGAAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTATGGCAGCAGGATCGACAGCA
* * * * **
13003532 CGCAGGGGGGACCGGGCCGATCCCC-AGCTTGATCATTCTGCCTCTCCAG-TCGGTTGAGCACCA
388 CACAGGGGGGACCGGGCCGATCCCCGA-CTTGAGCATTCTACCTCTCCGGCT-GACTGAGCACCA
* * *
13003595 GTATGCCCATTTTGTGGGTTGGCTTAGGCATAGTGAGTTCATTCCATGTCTAAGCCCC-AGCCAG
451 GTATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCGAGCCA-
*** *
13003659 ACCGAGGGTTGTGGTAGCGAGACCGACAAAAAGTAGA
515 AAAAAGGGTTGTGGCAGCGAGACCGACAAAAAGTAGA
* * **
13003696 GGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCAACTGGTTGAGCACCCGCACGCT
1 GGGGGATCGGGTCGATCCTCGACTTGTGCATTCTGCCTCTCCGGCTGGTTGAGCACCCGCACGCT
* * * *
13003761 CGTTTTGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCTTACGGAGTTCATTCC
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCC
13003825 ATGTCTAAGC
Statistics
Matches: 581, Mismatches: 93, Indels: 13
0.85 0.14 0.02
Matches are distributed among these distances:
550 3 0.01
551 257 0.44
552 321 0.55
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (551 bp):
GGGGGATCGGGTCGATCCTCGACTTGTGCATTCTGCCTCTCCGGCTGGTTGAGCACCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCC
AATCTAAGACCAGAACGAACCAAGGGTTGCAACAACAGGACCAGCAGCAAGATCGACAACACGCA
GGGGGGACCAGGCCGATCCCCAACTTTTGCATTCTGCCTCTCCAGCTGGCCTGTCCAGTCGGAAG
AGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATCCCCAGTCTAAGCATAC
GAAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTATGGCAGCAGGATCGACAGCACAC
AGGGGGGACCGGGCCGATCCCCGACTTGAGCATTCTACCTCTCCGGCTGACTGAGCACCAGTATG
CCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCGAGCCAAAAAAG
GGTTGTGGCAGCGAGACCGACAAAAAGTAGA
Found at i:13003814 original size:26 final size:26
Alignment explanation
Indices: 13003778--13003859 Score: 121
Period size: 26 Copynumber: 3.2 Consensus size: 26
13003768 TGGGTTGGCT
*
13003778 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCTTACGGAGTTCATTCCATGTC
13003804 TAAGCTTACGGAGTTCATTCCATGTC
1 TAAGCTTACGGAGTTCATTCCATGTC
* *
13003830 TAAGCTTATGGAGTTTATTCTCA-GTC
1 TAAGCTTACGGAGTTCATTC-CATGTC
13003856 TAAG
1 TAAG
13003860 ATTGGACCAG
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
26 50 0.96
27 2 0.04
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.35
Consensus pattern (26 bp):
TAAGCTTACGGAGTTCATTCCATGTC
Found at i:13004739 original size:26 final size:26
Alignment explanation
Indices: 13004709--13004761 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13004699 GTTGACTTAG
13004709 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13004735 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13004761 G
1 G
13004762 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13005241 original size:26 final size:26
Alignment explanation
Indices: 13005211--13005263 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13005201 GTTGGCTTAG
*
13005211 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13005237 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13005263 G
1 G
13005264 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13005553 original size:171 final size:171
Alignment explanation
Indices: 13005292--13005606 Score: 438
Period size: 171 Copynumber: 1.8 Consensus size: 171
13005282 TTGCAACAGT
** * * *
13005292 AGGACCAGTAGCAGGATCGGCAGCATGCAGGGGGGACCAGGCTGATCCCCGAGTTACGTATTTTG
1 AGGACCAGTAGCAGGATCAACAGCACGCAGGGGGGACCAGGCTGATCCCCGAGTTACGCATTATG
* ** *
13005357 CCTCTCCGACCGGTTGAGTGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGG-AGTTCA
66 CCTCTCCGACCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAAGTTCA
*
13005421 T-TCCATGTCTAAGCCCCAACCAGATCGAGGGTTGTGGTAGC
131 TCCCCA-GTCTAAGCCCCAACCAGATCGAGGGTTGTGGTAGC
* * *
13005462 AGGACCGGTAGCAGGATCAACAGCACGCAGAGGGGGACTAGGTTGATCCCCG-GCTTACGCATTA
1 AGGACCAGTAGCAGGATCAACAGCACGCAG-GGGGGACCAGGCTGATCCCCGAG-TTACGCATTA
** *
13005526 TGCCTCTCCGGTCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATATGGAAGTT
64 TGCCTCTCCGACCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAAGTT
13005591 CATCCCCAGTCTAAGC
129 CATCCCCAGTCTAAGC
13005607 ATACGGATTT
Statistics
Matches: 125, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
170 27 0.22
171 80 0.64
172 15 0.12
173 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (171 bp):
AGGACCAGTAGCAGGATCAACAGCACGCAGGGGGGACCAGGCTGATCCCCGAGTTACGCATTATG
CCTCTCCGACCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAAGTTCA
TCCCCAGTCTAAGCCCCAACCAGATCGAGGGTTGTGGTAGC
Found at i:13005609 original size:27 final size:26
Alignment explanation
Indices: 13005578--13005629 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
13005568 GTTGACTTAG
*
13005578 GCATATGGAAGTTCATCCCCAGTCTAA
1 GCATACGG-AGTTCATCCCCAGTCTAA
* *
13005605 GCATACGGATTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
13005630 TGATCGGATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13006576 original size:159 final size:158
Alignment explanation
Indices: 13006327--13006638 Score: 400
Period size: 159 Copynumber: 2.0 Consensus size: 158
13006317 TAAGATCAAA
* * * *
13006327 TTGGACCGAGGGTTACGGCAGTAGCATCGGTAGCACGCAGGGGGGACCGGGTCGATCCCTAGCTT
1 TTGGACCGAGGGTTACGGCAGTAGCACCGGCAGCACGCAGGGGGGACCAGGCCGATCCCTAGCTT
13006392 ACGCATTCTGCCACTCCGGCCGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGG-CTTAGGCAT
66 ACGCATTCTGCCACTCCGGCCGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGTC-TAGGCAT
*
13006456 AG-GGAGTTCATTCCATGTCTAAGCCCCAG
130 -GCGGAATTCATTCCATGTCTAAGCCCCAG
** * * *
13006485 TTGGACCGAGGGTTGTGGTAGTGAG-ACCGGCAGCACGTAGAGGGGGACCAGGCCGAT-CCTCGG
1 TTGGACCGAGGGTTACGGCAGT-AGCACCGGCAGCACGCAG-GGGGGACCAGGCCGATCCCT-AG
* * * * *
13006548 CTTACGCATTCTAG-CTCTCTGGTCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGTCTAGG
63 CTTACGCATTCT-GCCACTCCGGCCGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGTCTAGG
13006612 CATGCGGAATTCATTCCATGTCTAAGC
127 CATGCGGAATTCATTCCATGTCTAAGC
13006639 ATACGGAGTT
Statistics
Matches: 133, Mismatches: 15, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
158 35 0.26
159 96 0.72
160 2 0.02
ACGTcount: A:0.16, C:0.27, G:0.33, T:0.23
Consensus pattern (158 bp):
TTGGACCGAGGGTTACGGCAGTAGCACCGGCAGCACGCAGGGGGGACCAGGCCGATCCCTAGCTT
ACGCATTCTGCCACTCCGGCCGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGTCTAGGCATG
CGGAATTCATTCCATGTCTAAGCCCCAG
Found at i:13006645 original size:26 final size:26
Alignment explanation
Indices: 13006605--13006663 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
13006595 TCGTGGGTTG
* *
13006605 GTCTAGGCATGCGGAATTCATT-CCA
1 GTCTAAGCATACGGAATTCATTCCCA
*
13006630 TGTCTAAGCATACGGAGTTCATTCCCA
1 -GTCTAAGCATACGGAATTCATTCCCA
13006657 GTCTAAG
1 GTCTAAG
13006664 AGTTTGAGCC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (26 bp):
GTCTAAGCATACGGAATTCATTCCCA
Found at i:13007911 original size:26 final size:26
Alignment explanation
Indices: 13007875--13007927 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13007865 GTTGACTTAG
13007875 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13007901 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13007927 G
1 G
13007928 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13008381 original size:158 final size:155
Alignment explanation
Indices: 13007898--13008401 Score: 492
Period size: 159 Copynumber: 3.2 Consensus size: 155
13007888 ATCCCCAGTC
** * *
13007898 TAAGCATACGGAGTTCATTCCCA-GTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGTAGGATC
1 TAAGCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATC
* * * * * *
13007962 AACAGCACGCAGGGGGACCGGGCCAATCCCTGGCTTACGCATTCTGCCTCTTCGGTCGGCTGAGC
65 GACAGCACGAAGGGGGATCGGG-CGATCCCCGGCTTACGCATTCTGCCTC-TCCGTCGGCTGAGC
* *
13008027 GCCCGCACGCCCGTTTCATAGGTTGGCT
128 GCCCGCACGCTCGTTTCATGGGTTGGCT
* * ** ** *
13008055 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-TCGGATTGAGGGTTGTGGCAGCGGGATC
1 TAAGCATACGGAGTTCATTCCATGTCTAAGATC-AGATCGGACCGAGGGTTGTGGCAGCAGGATC
* * * * ** * * *
13008119 GGCAGCACGCAGATGGTGATCAGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGCTGGCTCA
65 GACAGCACG-A-AGGGGGATCGGGC-GATCCCCGGCTTACGCATTCTGCCTCTCCGTC-GGCTGA
* * * * *
13008184 GTGCTCGCACGCTCATTTCGTGGGTTGACT
126 GCGCCCGCACGCTCGTTTCATGGGTTGGCT
* * * * * * *
13008214 TAGGCATACGAAGTTCATTCCCA-GTCTAAGATCAGATTGAACCGATGGTTGCGGCAGCAAGATC
1 TAAGCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATC
* *
13008278 GATAGCACGTAAGGGGGATCGGGTCGGTCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAG
65 GACAGCACG-AAGGGGGATCGGG-CGATCCCCGGCTTACGCATTCTGCCTCTCCG-TCGGCTGAG
*
13008343 CGCCCGCATGCTCGTTTCATGGGTTGGCT
127 CGCCCGCACGCTCGTTTCATGGGTTGGCT
13008372 TAAGCATACGGAGTTCATTCCATGTCTAAG
1 TAAGCATACGGAGTTCATTCCATGTCTAAG
13008402 CATACAGAGT
Statistics
Matches: 271, Mismatches: 65, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
156 3 0.01
157 57 0.21
158 96 0.35
159 112 0.41
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (155 bp):
TAAGCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCG
ACAGCACGAAGGGGGATCGGGCGATCCCCGGCTTACGCATTCTGCCTCTCCGTCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCT
Found at i:13008785 original size:26 final size:26
Alignment explanation
Indices: 13008755--13008807 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13008745 GTTGACTTAG
13008755 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* **
13008781 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13008807 G
1 G
13008808 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13009504 original size:26 final size:26
Alignment explanation
Indices: 13009474--13009526 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13009464 GTTGACTTAG
13009474 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13009500 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13009526 G
1 G
13009527 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13009525 original size:719 final size:721
Alignment explanation
Indices: 13008136--13010048 Score: 1849
Period size: 719 Copynumber: 2.7 Consensus size: 721
13008126 CGCAGATGGT
* ** *
13008136 GATCAGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGCTGGCTCAGTGCTCGCACGCTCATT
1 GATCAGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCTGGCTCAGCGCTCGCACGCTCATT
* *** * *
13008201 TCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATTGAACCGATGGTTGC
66 TCATACATTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATAGAACCGAAGGTTGC
* * * * * *
13008266 GGCAGCAAGATCGATAGCACGTAAGGGGGATCGGGTCGGTCCCCGGCTTACGCATTCTGCCTCTC
131 AGCAGCAAGATCGACAACACGCAAGGGGGATCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTC
* * * * *
13008331 CGATCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATG
196 CGATCGACTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAAGCATACAGAGTTCATTCCATG
* *
13008396 TCTAAGCATACAGAGTTCATTTCTAGTCTAAGATCAGACCGGTCCAAGGGTTGGACAGCAGGATC
261 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGTCCAAGGGTTGGACAGCAGGATC
** * * *
13008461 AGCAGAAGGATCGGTAGCATGCAGGAGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCT
326 AGCAGAAGGATCGACAGCAAGCAGGAGGGGATCGAGCCGATCCCCGGCTTACGCATTCTGCCTCT
* * * * * *
13008526 CCGGTCGGCTGAGTGCCTGCATGCTTGTTTCGTGGGTTGGATTAGGCATACGGAGTTCACTCCAT
391 CCGGCCGGCTGAGAGCATGCATGCTCGTTTCATGGGTTGGATTAGGCATACGAAGTTCACTCCAT
* * * * *
13008591 GTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTAGGATCAGTAGCAGAATCAGTAGCATACAG
456 GTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGTAAGATCAGTAACAGAATCAGCAGCATACAG
* * * * * * * * * *
13008656 ATGAGGATCAAACTAATCCCTAGTTTGCTCATTATGCCTCTCCGACCGACCTTTTCAATCAGTTG
521 AGGAAGACCAAACTAATCCCTAGTCTGCGCATTATGCCTCTCCGACCGACCTCTCCAACCAGCTA
* *
13008721 AGCACCCGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
586 AGCACCCGCAAGCTCATTTCATGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* *
13008786 TGGAGTTCATTGCCAGTCTAAGATC-GAACCGGATC-GAGGGTTATGGCAGCGGGACTGACAGTA
651 CGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGA-CAGAGGGTTATGGCAGCGGGACTGACAGTA
13008849 TGTAGGGG
714 TGTAGGGG
* * * **
13008857 GATCGGGCCGATCCCCGGCTTACGTATTATGCCTCTTCGGCTGGCTCAGCGCTCGCACGCTTGTT
1 GATCAGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCTGGCTCAGCGCTCGCACGCTCATT
*
13008922 TCATACATTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTAG-ACTGAAGGTTG
66 TCATACATTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-TAGAACCGAAGGTTG
* *
13008986 CAGTAGCAAGATCGACAACACGCAAGGGGG-TCGGGTCGATCCCCAGCTTATGCATTCTGCCTCT
130 CAGCAGCAAGATCGACAACACGCAAGGGGGATCGGGTCGATCCCCAGCTTACGCATTCTGCCTCT
*
13009050 CCGATCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTT-AGCCATACAGAGTTCATTCCA
195 CCGATCGACTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAAG-CATACAGAGTTCATTCCA
** * *
13009114 TGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT-CGAGGGTTGCGATAGCAG
259 TGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGG-TCCAAGGGTTG-GACAGCAG
* * * *
13009178 GA-CTAGCAGCAA-GATCGACAGTAAGCATG-GGGGATCGAGCTGATCCCCGGCTTGCGCATTCT
322 GATC-AGCAG-AAGGATCGACAGCAAGCAGGAGGGGATCGAGCCGATCCCCGGCTTACGCATTCT
* *
13009240 GCCTCTCCGGCCGG-TTA-AGCATCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTC
385 GCCTCTCCGGCCGGCTGAGAGCAT-GCATGCTCGTTTCATGGGTTGGATTAGGCATACGAAGTTC
* ** * *
13009303 ATTCCATGTCTAAGCCTTAGCCGAACCGAGGGTTGTGG-ATGTAAGA-CTGGTAACAGTATC-GA
449 ACTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCA-GTAAGATC-AGTAACAGAATCAG-
* *** * * * *
13009365 CAGCATGCAGAGGAAGACCGGGCTGATCCCT-GTCCTGCGCATTATGCCTCTTCGGCCGGCCTCT
511 CAGCATACAGAGGAAGACCAAACTAATCCCTAGT-CTGCGCATTATGCCTCTCCGACCGACCTCT
* * * *
13009429 CCGACCTGCTAAGCGCCCGCAAGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
575 CCAACCAGCTAAGCACCCGCAAGCTCATTTCATGAGTTGACTTAGGCATACGGAGTTCATCCCCA
* * ***
13009494 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTACGGTAGTAAGA
640 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTATGGCAGCGGGA
* *
13009559 -TCGACAGCACGTAGGGG
705 CT-GACAGTATGTAGGGG
* * ** * * *
13009576 GAT--------T---GGGC-T--G-ATTATGTCTCT-CATCTGACTCAGCGTTCGAACGCTCATT
1 GATCAGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCTGGCTCAGCGCTCGCACGCTCATT
*** * * * ** * * * *
13009625 TCATGGGTTAACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAAAGTTGT
66 TCATACATTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATAGAACCGAAGGTTGC
* * * * * * * * * * *
13009690 TGCAGCAGGATCGAGAGCACGTAAAGGGGATCAAGGT-GGTCCTC-GATTTACGCATTCTACCTC
131 AGCAGCAAGATCGACAACACGCAAGGGGGATC-GGGTCGATCCCCAG-CTTACGCATTCTGCCTC
* * ** ** * * * * *
13009753 TCC-AGTCGGCTAAGTGCCCGTACGCTCCTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCT
194 TCCGA-TCGACTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAAGCATACAGAGTTCATTCC
* * * *** *
13009817 ATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGACTGCGGGTTATGG-CAAC
258 ATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCGGTCCAAGGG-T-TGGACAGC
* * * * * * *
13009880 AGGACCAGCAGCAGGATCG-TAGCATGCAGG-GGTGGATCGGGCCGATCCCCGACTTATGCATTC
320 AGGATCAGCAGAAGGATCGACAGCAAGCAGGAGG-GGATCGAGCCGATCCCCGGCTTACGCATTC
* * * * * * * *
13009943 TGCCTCTCCGGTCAGCTGAGCGCCCAT--ATGCTCGTTTCGTGAGTTGGCTTAGGCATAGGGAGT
384 TGCCTCTCCGGCCGGCTGAGAG--CATGCATGCTCGTTTCATGGGTTGGATTAGGCATACGAAGT
* * * *
13010006 TCATTCCATGTCTACA-CCTCAGCCGGACTGAGGGTTGTGGCAG
447 TCACTCCATGTCTA-AGCCCCAGCCGAACCGAGGGTTGTGGCAG
13010049 CGGGATCGAC
Statistics
Matches: 991, Mismatches: 168, Indels: 82
0.80 0.14 0.07
Matches are distributed among these distances:
702 1 0.00
703 107 0.11
704 180 0.18
705 78 0.08
706 5 0.01
707 1 0.00
708 6 0.01
711 1 0.00
718 10 0.01
719 258 0.26
720 178 0.18
721 162 0.16
722 4 0.00
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (721 bp):
GATCAGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCTGGCTCAGCGCTCGCACGCTCATT
TCATACATTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATAGAACCGAAGGTTGC
AGCAGCAAGATCGACAACACGCAAGGGGGATCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTC
CGATCGACTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAAGCATACAGAGTTCATTCCATG
TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGTCCAAGGGTTGGACAGCAGGATC
AGCAGAAGGATCGACAGCAAGCAGGAGGGGATCGAGCCGATCCCCGGCTTACGCATTCTGCCTCT
CCGGCCGGCTGAGAGCATGCATGCTCGTTTCATGGGTTGGATTAGGCATACGAAGTTCACTCCAT
GTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGTAAGATCAGTAACAGAATCAGCAGCATACAG
AGGAAGACCAAACTAATCCCTAGTCTGCGCATTATGCCTCTCCGACCGACCTCTCCAACCAGCTA
AGCACCCGCAAGCTCATTTCATGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTATGGCAGCGGGACTGACAGTATG
TAGGGG
Found at i:13009848 original size:26 final size:26
Alignment explanation
Indices: 13009799--13009851 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13009789 GTTGGCTTAG
*
13009799 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
13009825 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
13009851 G
1 G
13009852 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:13010369 original size:26 final size:26
Alignment explanation
Indices: 13010339--13010391 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13010329 GTTGACTTAG
13010339 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
13010365 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
13010391 G
1 G
13010392 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:13010970 original size:354 final size:343
Alignment explanation
Indices: 13010288--13011063 Score: 905
Period size: 354 Copynumber: 2.2 Consensus size: 343
13010278 TCTCCGATCG
* * * *
13010288 GCCTCTCAGACC-GACTGAGTGCCCGCTCGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTC
1 GCCTCTCAGGCCGGA-TGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTC
* * *
13010352 A-TCCCTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGTGA
65 ATTCCAT-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGA
* * *
13010416 CAGTAGGATCGACAACATGTAGAGGGGACCAAGCCAATCCCCGACTTGCGCATTCTGCCTCTTCG
129 CAGTAGGATCGACAACATGCACAGGGGACCAAGCCAATCCCCGACTTGCGCATTCTGCCTCTCCG
* * * *
13010481 ACCGTCTGAGCACCCGCACGCCTATTTTGTGGGTTGGCTTAGGCATAGAGGGCTCATTCCTTGTC
194 ACCGACTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGAGGGCTCATTCCATGTC
* * *
13010546 TAAGCCCCAGCCGGACCGAAGGCTGTGGCAATGGGACTGGCAGCACGTAGAGGGGGACCGGACCG
259 TAAGCCCCAGCCAGACCGAAGGCTGTGGCAATGGGACCGACAGCACGTAGAGGGGGACCGGACCG
* *
13010611 ATCCCCGACCTGCGCATTCT
324 ATCCCCGACCTACGCACTCT
*
13010631 GCCTCTCCA-GCCGGATGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTC
1 GCCTCT-CAGGCCGGATGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTC
* * *
13010695 ATTCCGTGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGATGGTTGTGAC
65 ATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGAC
* ** * * *
13010760 AGTAGGACAAATAGCAGGATAGACA-GCACACAGGGGGACCGGGCCGATCCTCGACTTGTGCATT
130 AGTAGG----AT--C--GACA-ACATG--CACA-GGGGACCAAGCCAATCCCCGACTTGCGCATT
** * * * * **
13010824 CTGCCTCTCCGGTCGACTGAGCGCTCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAG-GGATT
183 CTGCCTCTCCGACCGACTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGAGG-GC
** * *
13010888 TCATTCCATGTCTAAGCCCTGGCCAGACCGAGGGTTGTGGCAATGGGACCGACAGCACGTAGAGG
247 TCATTCCATGTCTAAGCCCCAGCCAGACCGAAGGCTGTGGCAATGGGACCGACAGCACGTAGAGG
** * *
13010953 GGGATTGGGCCGATCCCCGACTTACGCACTCT
312 GGGACCGGACCGATCCCCGACCTACGCACTCT
* * * * * * *
13010985 GTCTCTCAGGTCGGTTGAGCACCCGCGCGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
1 GCCTCTCAGGCCGGATGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCA
13011050 TTCCATGTCTAAGC
66 TTCCATGTCTAAGC
13011064 CCCAGTCGGA
Statistics
Matches: 363, Mismatches: 53, Indels: 23
0.83 0.12 0.05
Matches are distributed among these distances:
343 114 0.31
344 8 0.02
347 2 0.01
349 1 0.00
351 4 0.01
352 3 0.01
353 6 0.02
354 225 0.62
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (343 bp):
GCCTCTCAGGCCGGATGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCA
TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGACA
GTAGGATCGACAACATGCACAGGGGACCAAGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGAC
CGACTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGAGGGCTCATTCCATGTCTA
AGCCCCAGCCAGACCGAAGGCTGTGGCAATGGGACCGACAGCACGTAGAGGGGGACCGGACCGAT
CCCCGACCTACGCACTCT
Found at i:13011083 original size:159 final size:159
Alignment explanation
Indices: 13010791--13011139 Score: 419
Period size: 159 Copynumber: 2.2 Consensus size: 159
13010781 GACAGCACAC
* * ** * * * * *
13010791 AGGGGGACCGGGCCGATCCTCGACTTGTGCATTCTGCCTCTCCGGTCGACTGAGCGCTCGCATGC
1 AGGGGGATCGGGCCGATCCCCGACTTACGCACTCTGCCTCTCAGGTCGACTGAGCACCCGCACGC
* * * ** *
13010856 CCGTTTCGTGGGTTGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCTGGCCAGACCGAGG
66 CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAG
* * *
13010921 GTTGTGGCAATGGGACCGACAGCACGTAG
131 GTTGTGACAACGGGACCGACAGCACGCAG
* * ** *
13010950 AGGGGGATTGGGCCGATCCCCGACTTACGCACTCTGTCTCTCAGGTCGGTTGAGCACCCGCGCGC
1 AGGGGGATCGGGCCGATCCCCGACTTACGCACTCTGCCTCTCAGGTCGACTGAGCACCCGCACGC
* *
13011015 CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAAG
66 CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAG
* * *
13011080 GTTGTGACAGCGGGACCGGCAGCATGCAG
131 GTTGTGACAACGGGACCGACAGCACGCAG
** *
13011109 AGGCAGATCGGGTCGATCCCCGACTTACGCA
1 AGGGGGATCGGGCCGATCCCCGACTTACGCA
13011140 TTATGACTCT
Statistics
Matches: 158, Mismatches: 32, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
159 158 1.00
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (159 bp):
AGGGGGATCGGGCCGATCCCCGACTTACGCACTCTGCCTCTCAGGTCGACTGAGCACCCGCACGC
CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAG
GTTGTGACAACGGGACCGACAGCACGCAG
Found at i:13011522 original size:26 final size:26
Alignment explanation
Indices: 13011493--13011545 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13011483 GTTGACTTAG
*
13011493 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
*
13011519 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
13011545 G
1 G
13011546 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:13012776 original size:25 final size:26
Alignment explanation
Indices: 13012747--13012798 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
13012737 GTTGACTTAG
13012747 GCATACGGAGTTCATCCCTA-TCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
13012772 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
13012798 G
1 G
13012799 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:13013132 original size:159 final size:159
Alignment explanation
Indices: 13012779--13013171 Score: 374
Period size: 159 Copynumber: 2.5 Consensus size: 159
13012769 TAAGCATATG
* * * * * *
13012779 GAGTTCATTCCTAGTCTAAGATCGGACTGGACTGAGGGTTGCGGTAGCAGGATCGATAGTACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCA
* * ** * * * *
13012844 -AGGGGGACTGGGCCGATCCCTGGCTTGCCCATTCTGCCGCTCTGATCGGCTGAGTGCCCGCACG
66 GAGGGGGACCGGGCCAATCCCCCGCTTACCCATTATGCCGCTCTGATCGGCTCAGTCCCCGCACG
* **
13012908 CCTGTTTCGTGGGTTAGCTTAGGCATAGG
131 CCTGTTTAGTGGGTTAGCTTAGGCATACA
** * * * *
13012937 GAGTTCATT-CCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGCAGCGGGATCGATAGCACG
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACG
*
13013000 CAGAGGGGGACCGGGCCAATCCCCCGCTTACGCATTAT-CC-CTCTTCGA-CTGGCTCAGTACCC
64 CAGAGGGGGACCGGGCCAATCCCCCGCTTACCCATTATGCCGCTC-T-GATC-GGCTCAGT-CCC
*
13013062 CTGCAC-TC-GTTTAGTGGGTT-GACTTAGGCATACA
125 C-GCACGCCTGTTTAGTGGGTTAG-CTTAGGCATACA
* * * **
13013096 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAAGATCGATAGCACATA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCA
13013161 G-GGGGGACCGG
66 GAGGGGGACCGG
13013172 ATCGGTCCCC
Statistics
Matches: 188, Mismatches: 36, Indels: 22
0.76 0.15 0.09
Matches are distributed among these distances:
157 5 0.03
158 65 0.35
159 107 0.57
160 7 0.04
161 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.22
Consensus pattern (159 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCA
GAGGGGGACCGGGCCAATCCCCCGCTTACCCATTATGCCGCTCTGATCGGCTCAGTCCCCGCACG
CCTGTTTAGTGGGTTAGCTTAGGCATACA
Found at i:13013283 original size:26 final size:25
Alignment explanation
Indices: 13013247--13013298 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
13013237 GTTGGCTTAG
*
13013247 GCATACGGAGTTTATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
13013273 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
13013298 G
1 G
13013299 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:13014149 original size:536 final size:536
Alignment explanation
Indices: 13013076--13014175 Score: 1255
Period size: 536 Copynumber: 2.1 Consensus size: 536
13013066 ACTCGTTTAG
13013076 TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGC
1 TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGC
* * * * * * *
13013141 AGCAAGATCGATAGCACATAGGGGGGACCGGATCGGTCCCCGACTTATGCATTCTAGCTTTTCGG
66 AGCAAGATCAACAGCACACAGGGGGGACCGGATCGGACCCCGACTTACGCATTCTACCTTCTCGG
*
13013206 CTGGCTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCT
131 CTGGCTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * * ** * *
13013271 AAGCATACGGAGTTCATTCCAGTCTAAGATTGGACCAGACTGAGGTTTGTGATAGCAGGACCAGC
196 AAGCATACGAAGTTCATTCCAGTCTAAGATCGAACCAGACAAAGGTTCGTGATAGCAGGACCAAC
** * * *
13013336 AGTAAGATCGATAGCTTGCAGGGGGACCGAGCCAATCCTCAGCTTACGCATTCTACCTCTCCGAC
261 AACAAGATCGATAGCATGCAGGGGGACCGAGCCAATCCCCAGCTTACACATTCTACCTCTCCGAC
* * * ** * *
13013401 TGGCTGAGCCCCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTGTA
326 CGGCTGAACACCCGCACCCTCATTTCATGGGTTGGCTTAGACATACGAAGTTCATTCCATGTCTA
* * **
13013466 AGCGCCAGTCAGATCGAGGGTTGTCATAGCAGGAGCGGCAACGAGATCGGTAACACACAGAAGGA
391 AGCCCCAGTCAGACCGAGGGTTGTCATAGCAGGAGCGGCAACGAGATCGACAACACACAGAAGGA
* * *
13013531 GGCCAGGCTGATCCTCGACTTGTGCATTATGCCTCTTCGATCGGCCTCTCTGGTCAGTCGAGTGC
456 GGCCAGGCTGATCCTCGACTTGTGCATTATGCCTCTTCGACCGACCTCTCTGGTCAGTCGAGCGC
*
13013596 CTACACTCTCATTTCA
521 CTACACGCTCATTTCA
* * **
13013612 TGGGTTGACTTAGGCATAC-GAAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGTGG
1 TGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGG
* * * * * *
13013676 CAGTAGGATCAACAGCACGCAGGGAGGGACCGGGTC-GACCCCTGGCTTGCGCATTCTACC-TCT
65 CAGCAAGATCAACAGCACACAGGG-GGGACCGGATCGGACCCC-GACTTACGCATTCTACCTTCT
* * * *
13013739 CTGGCTGGCTGAGTGCCCGTACGCTCATTTCCTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
128 C-GGCTGGCTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
* * *
13013804 GTCTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAACC-GAATCAAAGGTTACG-GCTA-TA
192 GTCTAAGCATACGAAGTTCATT-CCAGTCTAAGATCGAACCAG-A-CAAAGGTT-CGTGATAGCA
* * * * * *
13013866 GGACCAACAACAGGATCGGTAGCATGCAGGGAGGGA-CGGGCCGATCCCCAGCTTGCACATTTTA
253 GGACCAACAACAAGATCGATAGCATGCA-GG-GGGACCGAGCCAATCCCCAGCTTACACATTCTA
* *
13013930 CCTCTCTTG-CCGGTTGAACACCCGCACCCTCATTTC-TGGGTTGGCTTAGACATAC-AGAGTTC
316 CCTCTC-CGACCGGCTGAACACCCGCACCCTCATTTCATGGGTTGGCTTAGACATACGA-AGTTC
** *
13013992 ATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAGCAGGA-CGGTAATCG-GATCGACA
379 ATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTCATAGCAGGAGCGGCAA-CGAGATCGACA
* * *
13014055 GCACGCAG-AGG-GGACCAGGCTGATCGC-CGGCTTG-GACATTATGCCTCTTCGACCGACCT-T
443 ACACACAGAAGGAGG-CCAGGCTGATC-CTCGACTTGTG-CATTATGCCTCTTCGACCGACCTCT
* * * ** **
13014115 TTCGGTC-GGCTGAGCGTCTGTACGCTTGTTTCA
505 CT-GGTCAGTC-GAGCGCCTACACGCTCATTTCA
13014148 TGGGTTGACTTAGGCATACAGAGTTCAT
1 TGGGTTGACTTAGGCATACAGAGTTCAT
13014176 CCCTGATCTA
Statistics
Matches: 472, Mismatches: 73, Indels: 38
0.81 0.13 0.07
Matches are distributed among these distances:
535 8 0.02
536 170 0.36
537 122 0.26
538 106 0.22
539 60 0.13
540 6 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (536 bp):
TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGC
AGCAAGATCAACAGCACACAGGGGGGACCGGATCGGACCCCGACTTACGCATTCTACCTTCTCGG
CTGGCTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCATACGAAGTTCATTCCAGTCTAAGATCGAACCAGACAAAGGTTCGTGATAGCAGGACCAAC
AACAAGATCGATAGCATGCAGGGGGACCGAGCCAATCCCCAGCTTACACATTCTACCTCTCCGAC
CGGCTGAACACCCGCACCCTCATTTCATGGGTTGGCTTAGACATACGAAGTTCATTCCATGTCTA
AGCCCCAGTCAGACCGAGGGTTGTCATAGCAGGAGCGGCAACGAGATCGACAACACACAGAAGGA
GGCCAGGCTGATCCTCGACTTGTGCATTATGCCTCTTCGACCGACCTCTCTGGTCAGTCGAGCGC
CTACACGCTCATTTCA
Found at i:13014211 original size:26 final size:26
Alignment explanation
Indices: 13014161--13014213 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13014151 GTTGACTTAG
*
13014161 GCATACAGAGTTCATCCCTGATCTAA
1 GCATACAGAGTTCATCCCAGATCTAA
*
13014187 GCATACGGAGTTCATTCCCAG-TCTAA
1 GCATACAGAGTTCA-TCCCAGATCTAA
13014213 G
1 G
13014214 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCAGATCTAA
Found at i:13014571 original size:159 final size:155
Alignment explanation
Indices: 13014187--13014691 Score: 461
Period size: 159 Copynumber: 3.2 Consensus size: 155
13014177 CCTGATCTAA
* *
13014187 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTTCGACAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTT-GGCAGC-AGATCGAC
* * * * * *
13014251 AGCACGCAGA-AGGGAC-CGAGCCGATCCCGGCTTGCGCATTTTACCCCTCCGGCCGGCTGAGCG
63 AGCACGCAGAGGGGGACTAG-GCCGATCCCCGCTTGCGCATTTTGCCTCTCC-GACGGCTGAGCG
* * *
13014314 CCTGTACGCCCATTTCGTGGGTTGGCTTAG
126 CCCGTACGCTCATTTCGTGGGTTGACTTAG
* * **
13014344 GCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-CC-GAACCGAGGGTTGTGGCAGCAGGA-CTG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAG-ACCGAGGGTT-TGGCAGCA-GATC-G
* * * * *
13014406 CCAGCACGCAGAGGGGGACTAGGGCGATCCCCAGCTTGCACATTATGCCTCTCCGATCGGCTCAG
61 ACAGCACGCAGAGGGGGACTAGGCCGATCCCC-GCTTGCGCATTTTGCCTCTCCGA-CGGCTGAG
13014471 CGCCCGTACGCTCATTTCGTGGGTTGACTTAG
124 CGCCCGTACGCTCATTTCGTGGGTTGACTTAG
* *
13014503 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACTGAGGGTTATGGCAGCAGTATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTT-TGGCAGCAG-ATCGAC
* * * * * *
13014567 AGCACACA-AGGGGGA-TCAGGTCGATCCTCGACTTACGCATTTTGCCTCTCTGACTGGCTGAGT
63 AGCACGCAGAGGGGGACT-AGGCCGATCCCCG-CTTGCGCATTTTGCCTCTCCGAC-GGCTGAGC
* * *
13014630 GCCCGTACGCACACTCGTTTCATGGGTTGCCTTAG
125 GCCCGTACG----CTCATTTCGTGGGTTGACTTAG
*
13014665 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13014692 CATACAAAGT
Statistics
Matches: 284, Mismatches: 41, Indels: 41
0.78 0.11 0.11
Matches are distributed among these distances:
156 6 0.02
157 55 0.19
158 71 0.25
159 103 0.36
160 5 0.02
161 3 0.01
162 41 0.14
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTTGGCAGCAGATCGACAGC
ACGCAGAGGGGGACTAGGCCGATCCCCGCTTGCGCATTTTGCCTCTCCGACGGCTGAGCGCCCGT
ACGCTCATTTCGTGGGTTGACTTAG
Found at i:13014695 original size:26 final size:26
Alignment explanation
Indices: 13014665--13014717 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13014655 GTTGCCTTAG
*
13014665 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
13014691 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
13014717 G
1 G
13014718 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:13015081 original size:26 final size:26
Alignment explanation
Indices: 13015045--13015104 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
13015035 GTTGACTTAG
*
13015045 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13015071 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13015097 G-AT-CGGAG
1 GCATACGGAG
13015105 CAGACCGAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 25 0.78
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13015604 original size:26 final size:26
Alignment explanation
Indices: 13015566--13015616 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13015556 TGGCTTAGGC
*
13015566 ATACGGAGTTCATT-CCATGTCTAAGG
1 ATACGGAGCTCATTCCCA-GTCTAAGG
13015592 ATACGGAGCTCATTCCCAGTCTAAG
1 ATACGGAGCTCATTCCCAGTCTAAG
13015617 ATTTTAAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGCTCATTCCCAGTCTAAGG
Found at i:13016305 original size:26 final size:26
Alignment explanation
Indices: 13016275--13016326 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13016265 GTTGACTTAG
13016275 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13016301 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13016327 AATCAGATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13016811 original size:26 final size:26
Alignment explanation
Indices: 13016775--13016826 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13016765 TTGGCTTAGT
*
13016775 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACAGAGTTCATTCCCA-GTCTAAG
13016801 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
13016827 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:13017192 original size:26 final size:26
Alignment explanation
Indices: 13017156--13017208 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13017146 TTTGACTTAG
13017156 GCATACGGAGTTCA-TCCCAAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
13017182 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13017208 G
1 G
13017209 ATCGGACGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13023560 original size:26 final size:26
Alignment explanation
Indices: 13023508--13023560 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
13023498 GTTGACTTAG
*
13023508 GCATACAGAGTTCATCCCCAGTATAA
1 GCATACAGAGTTCATCCCCAATATAA
* * * *
13023534 GCATACGGAGTTTATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATATAA
13023560 G
1 G
13023561 ATCGAACTGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATATAA
Found at i:13024157 original size:159 final size:157
Alignment explanation
Indices: 13023869--13024213 Score: 390
Period size: 159 Copynumber: 2.2 Consensus size: 157
13023859 CCCAATCTAA
* **
13023869 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAGCAAGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGCCCGAACCAGACCGAGGGTTACGACAGCAAGATCGACA
* * * *
13023934 ACACGCAGGGGGGATCAGGCCGATCCCTGGCTTGGGCATTCTGCCTCTCTGGCCGGCTGAGCGCC
65 ACACGCAGGGGGGATCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGACCGGCTCAGCGCC
*
13023999 CGCACGCCCGTT-TCGTGGGTTGGCTTAG
130 CGCACGCCCGTTCT-GTGGGTTGACTTAG
* * * * ** * * *
13024027 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCA-GTCTAAGCCCGAACCAGACCGAGGGTTACGACAGCAAGATCGACA
* * * *
13024092 GCATGCAGAGGGGGATCGGGCCGAT-CCTCGGCTTGCGCATTATGCCTCT-TCGATCGGCTCAGC
65 ACACGCAG-GGGGGATCAGGCCGATCCCT-GGCTTGCGCATTATGCCTCTCT-GACCGGCTCAGC
**
13024155 GCCCGCACGCTTGTTCTGTGGGTTGACTTAG
127 GCCCGCACGCCCGTTCTGTGGGTTGACTTAG
*
13024186 GCATACGGAGTTCATCCCCAGTCTAAGC
1 GCATACGGAGTTCAT-TCCAGTCTAAGC
13024214 ATGCGGAGTT
Statistics
Matches: 157, Mismatches: 24, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
157 3 0.02
158 60 0.38
159 90 0.57
160 4 0.03
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGCCCGAACCAGACCGAGGGTTACGACAGCAAGATCGACAA
CACGCAGGGGGGATCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGACCGGCTCAGCGCCC
GCACGCCCGTTCTGTGGGTTGACTTAG
Found at i:13024215 original size:26 final size:26
Alignment explanation
Indices: 13024186--13024238 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13024176 GTTGACTTAG
13024186 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13024212 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13024238 G
1 G
13024239 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13024236 original size:343 final size:338
Alignment explanation
Indices: 13023435--13024555 Score: 1371
Period size: 343 Copynumber: 3.3 Consensus size: 338
13023425 ACCACCTGTT
** * * *
13023435 CGATCCCCGGCTTGCGCATCCTGCCTC-TCTGGTCGGCTGAGCGCCCGCACGATCATTTTGTGGG
1 CGATCCCCGGCTTGCGCATTATGCCTCTTC-GGTCGGCTCAGCGCCCGCACGCTCGTTTTGTGGG
* * * *
13023499 TTGACTTAGGCATACAGAGTTCATCCCCAGTATAAGCATACGGAGTTTATTCCCAATCTAAGATC
65 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
** * *
13023564 GAACTGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGCACCGGGCCGATTCCCC
130 GAACTGGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGG-A-CAGGCCGA-TCCCG
* * * *
13023629 GCTTGTGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCATGCCTGCTTCGTGGTTTGGCTTAGG
192 GCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGG
* * * *
13023694 CATAGGGAGTTTATTCCATGTCTAAGACCCAACTGGACCGAGGGTTGTGGCAGCAAGACTGG-A-
257 CATAGGGAGTTCATTCCATGTCTAAG-CCCAGCCGGACCGAGGGTTGTGGCAGCAGGAC-GGCAG
13023757 -A-GC-A---GGATCGGGC
320 CATGCAAGGGGGATCGGGC
* * * * * *
13023770 TGATCCCTGGCTTGCGCATTATGCCTCTCCGGTC-GCTTGAGCGCCCCCACGCTCGTTTCGTGGG
1 CGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGC-TCAGCGCCCGCACGCTCGTTTTGTGGG
* * * *
13023834 TTAACTTAGGTATACGGAGTTCATCCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
65 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
** * *
13023899 GAACCAGACCGAGGGTTACGACAGCAAGATCGACAACACGCAGGGGGGATCAGGCCGATCCCTGG
130 GAACTGGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGGA-CAGGCCGATCCC-GG
* * * * *
13023964 CTTGGGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGC
193 CTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGC
13024029 ATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGC
258 ATAGGGAGTTCATTCCATGTCTAAGCCC-AGCCGGACCGAGGGTTGTGGCAGCAGGA-CGGCAGC
13024094 ATGCAGAGGGGGATCGGGC
321 ATGCA-AGGGGGATCGGGC
* * * *
13024113 CGATCCTCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTTGTTCTGTGGGT
1 CGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTTGTGGGT
*
13024178 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCG
66 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * ** * ** *
13024243 GACTGGAACGAGGGTTGCGACAGCAGGATCGGTAGCACGAAGGGCAGACCGAGCCGATCCCCGGC
131 AACTGGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGGACAG-GCCGAT-CCCGGC
* * * *
13024308 TTGCGCATTCTGCCTCTCCGATTGGTTGAGTGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGTCA
194 TTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCA
* * *
13024373 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCA
259 TAGGGAGTTCATTCCATGTCTAAG-CCCAGCCGGACCGAGGGTTGTGGCAGCAGGA-CGGCAGCA
*
13024438 TGCAAAGGGGGACCGGGC
322 TGC-AAGGGGGATCGGGC
* * * * * **
13024456 CAATCCCCGGCTTGCGCATTATGCCTTTTCGGGCGGCTCACCGCCCGCACGCTTGTTTTGTGTAT
1 CGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTTGTGGGT
* * *
13024521 GGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
66 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
13024556 ATCGGACCAA
Statistics
Matches: 675, Mismatches: 92, Indels: 30
0.85 0.12 0.04
Matches are distributed among these distances:
333 7 0.01
334 119 0.18
335 151 0.22
336 1 0.00
337 1 0.00
338 2 0.00
340 1 0.00
342 2 0.00
343 382 0.57
344 9 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (338 bp):
CGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTTGTGGGT
TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
AACTGGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGGACAGGCCGATCCCGGCTT
GCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATA
GGGAGTTCATTCCATGTCTAAGCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACGGCAGCATGCA
AGGGGGATCGGGC
Found at i:13024539 original size:159 final size:157
Alignment explanation
Indices: 13024299--13024714 Score: 399
Period size: 157 Copynumber: 2.6 Consensus size: 157
13024289 GACCGAGCCG
* *** * * ** * * *
13024299 ATCCCCGGCTTGCGCATTCTGCCTCTCCGATTGGTTGAGTGCCCGCATGCCCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTATGCCTCTCCGGGCGGCTCACCGCCCGCACGCTCGTTT-ATGGGTTG
* * * * *
13024364 GCTTAGTCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCGGG
65 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCGAGGGTTG-GGCAGCAGG
* *
13024428 ACCGACAGCATGCAAAGGGGGACCGGGCCA
129 ACCGACAGCATAC-AAGGGGGACCAGGCCA
* * * *
13024458 ATCCCCGGCTTGCGCATTATGCCTTTTCGGGCGGCTCACCGCCCGCACGCTTGTTT-TGTGTATG
1 ATCCCCGGCTTGCGCATTATGCCTCTCCGGGCGGCTCACCGCCCGCACGCTCGTTTATGGGT-TG
* * * *
13024522 GACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACCAAACCGAGGGTTGGGCAGCAT
65 G-CTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAAACCGAGGGTTGGGCAGCAG
* *****
13024585 GATCGACAGCATACAAGGGGGACCATTTTG
128 GACCGACAGCATACAAGGGGGACCAGGCCA
* * * * * *
13024615 ATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTTAGCGCCTGCACGCTCGTTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTATGCCTCTCCGGGCGGCTCACCGCCCGCACGCTCGTTT-ATGGGTTG
13024680 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13024715 TACGGAGTTC
Statistics
Matches: 207, Mismatches: 42, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
156 3 0.01
157 88 0.43
158 27 0.13
159 86 0.42
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.25
Consensus pattern (157 bp):
ATCCCCGGCTTGCGCATTATGCCTCTCCGGGCGGCTCACCGCCCGCACGCTCGTTTATGGGTTGG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCGAGGGTTGGGCAGCAGGAC
CGACAGCATACAAGGGGGACCAGGCCA
Found at i:13024716 original size:26 final size:26
Alignment explanation
Indices: 13024686--13024738 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13024676 GTTGGCTTAG
13024686 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13024712 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13024738 G
1 G
13024739 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13025795 original size:159 final size:158
Alignment explanation
Indices: 13025433--13025934 Score: 513
Period size: 158 Copynumber: 3.2 Consensus size: 158
13025423 CCCAGTCTAA
* * *
13025433 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* ** * * * * *
13025498 GCACACAGGGGGGACCGGACCGATCCCCGGCTTGTGCATTCTACATCTCCGATCGGCTGAACGCC
66 GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCGCC
*
13025563 CGTACGGC-CGTTTCATGGGTTGGCTTAG
131 CGCAC-GCTCGTTTCATGGGTTGGCTTAG
* ** ** * ** * * ** **
13025591 GCATAGGGAGTTCATTCCTTGTCTAAGCCCTAGTCGGACTGAGGGTTGTGGCAGTGGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* * * * * * *
13025656 ACACGCAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGGTTGGCTCAGCAC
66 GCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCGC
*
13025721 CCGCACGCTCGTTTCATGGGTTGACTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
13025750 GCATACGGAGTTTATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGACAGCAAGACCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* * * * * * * *
13025815 GTACGCAGGGGGGAGCGAGTCGGTCCCCGACTTGCGCATTCTGCCTCTCCAACTGGCTGAGTGCC
66 GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCGCC
* *
13025880 CGCACGCTCGTTTCGTGGGTTGGCTTCG
131 CGCACGCTCGTTTCATGGGTTGGCTTAG
*
13025908 GCATACGAAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
13025935 CATACGGAGT
Statistics
Matches: 269, Mismatches: 72, Indels: 6
0.78 0.21 0.02
Matches are distributed among these distances:
157 3 0.01
158 147 0.55
159 119 0.44
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:13025945 original size:26 final size:26
Alignment explanation
Indices: 13025908--13025960 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13025898 GTTGGCTTCG
13025908 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
13025934 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13025960 G
1 G
13025961 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13026311 original size:26 final size:26
Alignment explanation
Indices: 13026275--13026327 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13026265 GTTGACTTAG
13026275 GCATACGGAGTTC-ATCCCTAGTCTAA
1 GCATACGGAGTTCGATCCC-AGTCTAA
*
13026301 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCGATCCCAGTCTAA
13026327 G
1 G
13026328 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCGATCCCAGTCTAA
Found at i:13026766 original size:158 final size:157
Alignment explanation
Indices: 13026301--13026793 Score: 492
Period size: 158 Copynumber: 3.1 Consensus size: 157
13026291 CCTAGTCTAA
* * * ** *
13026301 GCATACGGAGTTCGTTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATTGACA
* * * *
13026366 GCACGTAGGGGGGA-TCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCTGCTAAGCGC
65 GCACGCAGGGGGGACT-GGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTAAGCGC
* *
13026430 CCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * *
13026459 GTATA-GGTAGTTCATTCCATGTCTAAGCCCCAG-CTGGACTGAGGGTTGTGGCAGCAGGACTGG
1 GCATACGG-AGTTCATTCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGCGGCAGCAGGATTGA
* * * * * * *
13026522 CAGCATGCTGAGGGGGACCGGGCTGATCCTCGGCTTGCGCATT-AGTCCTCTTCGG-TAGGCTCA
63 CAGCACGCAG-GGGGGACTGGGCTGATCCCCGGCTTGCGCATTCTG-CCTCTTCGGCCA-GCTAA
* * * * *
13026585 CCGCCCGCATGCTCGTTCCGTGGGTTGACTTAT
125 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
13026618 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGATTGAGGGTTGCGGTAGCTGGATTGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATTGACA
* * * * *
13026683 GCACACAGGGGGGACTGGGCCGATCCCCCGCTTGCGCATTCTGCCTCTTCGGCCAACTGAGCGCC
65 GCACGCAGGGGGGACTGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTAAGCGCC
* *
13026748 TGCACGCTCATTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
13026776 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
13026794 CTATCTTAGC
Statistics
Matches: 262, Mismatches: 61, Indels: 24
0.76 0.18 0.07
Matches are distributed among these distances:
157 5 0.02
158 134 0.51
159 121 0.46
160 2 0.01
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATTGACAG
CACGCAGGGGGGACTGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTAAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13033480 original size:26 final size:25
Alignment explanation
Indices: 13033447--13033496 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
13033437 TGGCTTAGGT
13033447 ATACGAGTTCATT-CCATGTCTAAGC
1 ATACGAGTTCATTACCA-GTCTAAGC
13033472 ATACGGAGTTCATTACCAGTCTAAG
1 ATAC-GAGTTCATTACCAGTCTAAG
13033497 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 4 0.17
26 16 0.70
27 3 0.13
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (25 bp):
ATACGAGTTCATTACCAGTCTAAGC
Found at i:13033853 original size:26 final size:26
Alignment explanation
Indices: 13033824--13033876 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13033814 GTTGACTTAG
13033824 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
13033850 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13033876 G
1 G
13033877 ATCATATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13034169 original size:159 final size:158
Alignment explanation
Indices: 13033850--13034353 Score: 408
Period size: 159 Copynumber: 3.2 Consensus size: 158
13033840 TCCAGTCTAA
** ** * *
13033850 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCATATTGGACTGAGGGTTGCGGCAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCA-GCTGGACTGAGGGTTGCGGCAGCAGGACCGA
* * * * ** * *
13033913 CAGCACGCAGTGGGGACTGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCG
64 CAGCACGCAGGGGGGACTGAGCCGATCCCCGGCTTGCACATTATACCTCTCCGGCCGACCCAACA
* *
13033978 CCCGCACGCCCGTTTCGTGGGTTGACTTAG
129 CCCGCACGCCCGTTTCATGGCTTGACTTAG
* * * *
13034008 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACTGAGGGTTGTGGCAGCGGGACCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACTGAGGGTTGCGGCAGCAGGACCGACA
* * * * *
13034073 GCACGCAGAGGGGGA-TCGGGCCGATCCTCGGCTTGCACATTATGCCTCTTCGGTCGACCCAACA
66 GCACGCAG-GGGGGACT-GAGCCGATCCCCGGCTTGCACATTATACCTCTCCGGCCGACCCAACA
*
13034137 CCCGCACGCTCGTTTCATGGCTTGACTTAG
129 CCCGCACGCCCGTTTCATGGCTTGACTTAG
* ** * * * *
13034167 GCATACGGAGTTCATTCCCA-ATCTAAG-AGCGGACCGGACTGAGGGTTGTGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CTGGACTGAGGGTTGCGGCAGCAGGACCGA
* * * * * * * * * * **** *
13034230 TAGCATGTAGGGGGAGACTGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGTTGAGC
64 CAGCACGCAGGGGG-GACTGAGCCGATCCCCGGCTTGCACATTATACCTCTCCGGCCGACCCAAC
* ** * *
13034295 GCCCGCACGGTCGTTTCGTTGG-TTGGCTTAG
128 ACCCGCACGCCCGTTTC-ATGGCTTGACTTAG
*
13034326 GTATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
13034354 ATACAGAGTT
Statistics
Matches: 278, Mismatches: 57, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 66 0.24
159 202 0.73
160 7 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACTGAGGGTTGCGGCAGCAGGACCGACA
GCACGCAGGGGGGACTGAGCCGATCCCCGGCTTGCACATTATACCTCTCCGGCCGACCCAACACC
CGCACGCCCGTTTCATGGCTTGACTTAG
Found at i:13034357 original size:26 final size:26
Alignment explanation
Indices: 13034328--13034378 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13034318 TGGCTTAGGT
*
13034328 ATACGGAGTTCATTCC-ATGTCTAAGC
1 ATACAGAGTTCATTCCTA-GTCTAAGC
13034354 ATACAGAGTTCATTCCTAGTCTAAG
1 ATACAGAGTTCATTCCTAGTCTAAG
13034379 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCTAGTCTAAGC
Found at i:13035717 original size:26 final size:26
Alignment explanation
Indices: 13035688--13035740 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13035678 GTTGACTTAG
*
13035688 GCATACGGAGGTCATCCCCAGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
* * *
13035714 GCATACGAAGTTCATTCCCTGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
13035740 G
1 G
13035741 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGGTCATCCCCAGTCTAA
Found at i:13036065 original size:26 final size:26
Alignment explanation
Indices: 13036029--13036081 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13036019 GTTGGCTTAG
13036029 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13036055 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13036081 G
1 G
13036082 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13036272 original size:355 final size:341
Alignment explanation
Indices: 13035637--13038185 Score: 771
Period size: 355 Copynumber: 7.3 Consensus size: 341
13035627 TCTCCGATCG
* * *
13035637 GCCTCTCCGACCGGCTGAGTGCCCTCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGGTCA
1 GCCTCTCCGACCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGGTCA
* * * * *
13035702 TCCCCAGTCTAAGCATACGAAGTTCATTCCCTGTCTAAGATCAGATCGGATCGAGGGTTACGGCA
66 TCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTACGGCA
* * * ** *
13035767 GCAGGATCGACAGATGTAGGGGGACCGGACCGATCCCTAGCTTGCACATTCTGCCTTTTTGGTCG
131 GCAGGATCGACAGACGTAGGGGGACCGGACCGATCCCGAGCTTGCACATTCTGCCTCTCCGGCCG
* * * * * * * *
13035832 GCTGAGTGCCCGTACGCCCGTTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
196 GCTGAGCGCCCGCACGCCCATTTCGTCGGTTGGCTCAAGCATACGGAGCTCATTCAATGTCTAAG
* *
13035897 CCCCAGTGGAACTAAGGGTTGTGGCAGCGAGATCGACAGCACGCAGAGGGGGACCAGGTCGATCC
261 CCCCAGTCGAACCAAGGGTTGTGGCAGCGAGATCGACAGCACGCAGAGGGGGACCAGGTCGATCC
13035962 CCACCTTGCGCATTAT
326 CCACCTTGCGCATTAT
** * *
13035978 GCCTCTCCGACCGGCTCAGTGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCA
1 GCCTCTCCGACCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGGTCA
* * *
13036043 T-TCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC-GAACCGAACCAAGGGTTACGG
66 TCCCCA-GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCGAACCAAGGG-T----
*
13036106 TAGCAGGACCCGCAGCAGGATCGACAGCACGTAGGGGGGACCAGG-TCGATCCCCGA-CTTGCAC
124 TA-C--G----GCAGCAGGATCGACAG-ACGTA-GGGGGACC-GGACCGAT-CCCGAGCTTGCAC
* * *
13036169 ATTCTGCCTCTCCGGCCGGCTGAGCGCTCGCACGCTCATTTCGTGGGTTGGCTCAAGCATACGGA
178 ATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCATTTCGTCGGTTGGCTCAAGCATACGGA
*
13036234 GCTCATTCAATGTCTAAGCCCCAGTACG-ACCGAGGGTTGTGGTAGCAGGACCGGCAGTGGGATC
243 GCTCATTCAATGTCTAAGCCCCAGT-CGAACCAAGGGTTGT-G--GCA-G--C-G-A----GATC
** * * * * * *
13036298 GGTAACACGTAGAGGGGGACCGAGCT-AAT-CCCAGCTTGGGCATTAT
295 GACAGCACGCAGAGGGGGACC-AGGTCGATCCCCACCTTGCGCATTAT
* * ** * **
13036344 GCCTCTCCGACCAGCTCAATGCCCAAACGCTCGTTTCATGGGTTGACTTAGGCATACGGACTTCA
1 GCCTCTCCGACCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGGTCA
* * ** * * * * * * *
13036409 TTCCCAGTCTAAG-AT-CG--GATCAGACCGAGGGTTGTGACAGCAGGATCGATAGCATGAAGGG
66 TCCCCAGTCTAAGCATACGAAGTTCATTCCCA--G-TCTAAGATCA-GACCGA-A-C--CAAGGG
* * * * * * * **** *** * *
13036470 ---GGGGA-CTGGGTCGATCCCCGGCTTACGCATTCTACCTCTCC-AGTCGGCTGAGCGCT-CAC
123 TTACGGCAGCAGGATCGA---CAGACGTA-G--GGGGACCGGACCGA-TC--CCGAGC-TTGCAC
** * * * ** * * * ** * *
13036529 ACGCT-CATTTCATGGGTTGGCTTAG-GCATACGGA-GTTCA-TTC--C--ATGTCT-AAGCATA
178 ATTCTGCCTCTC--CGGCCGGCTGAGCGC--CCGCACGCCCATTTCGTCGGTTGGCTCAAGCATA
* * * ** * * * *
13036585 CGGAGTTCATTCCCA-GTCAAAG-ATCAGACCAGACCGAGGGTTGCGACAACAGGACCAGCAGCA
239 CGGAGCTCATT-CAATGTCTAAGCCCCAGTCGA-ACCAAGGGTT--G-----TGG--CAGC-G-A
** * * * *
13036648 GGATCGACAGCACATAGGGGGGGACC-GAGTCGATCCCCAGCTTGTGCATTCT
291 -GATCGACAGCACGCAGAGGGGGACCAG-GTCGATCCCCACCTTGCGCATTAT
* * * * ** * ** * *
13036700 ACCTGTCTGGCCGGC-CTAGCACCCGCACACTCATTTTGTGGGTTGACTTAGGCATATGGAGTTC
1 GCCTCTCCGACCGGCTC-AGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGGTC
* * * * * *
13036764 ATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGATCGAGGGTTGCGG
65 ATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCGAACCAAGGGTTACGG
* * * * * **
13036828 CAGCAAGATCGATAGTATGTAGTGGGGATCGGGCCGATCCTCGA-CTTGCGTATTCTGCCTCTCC
129 CAGCAGGATCGACAG-ACGTAG-GGGGACCGGACCGATCC-CGAGCTTGCACATTCTGCCTCTCC
* * * * * * * * * * * *
13036892 GACCGACTGAGTGCTCGCACGCACATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGT
191 GGCCGGCTGAGCGCCCGCACGCCCATTTCGTCGGTTGGCTCAAGCATACGGAGCTCATTCAATGT
** *
13036957 CTAAGCCCCAGTCGAACTGAGGGTTATGGCAGCAAGACCGACAGCGAGATCGACAGCACGCAGAG
256 CTAAGCCCCAGTCGAACCAAGGG-T-T----G--TG---G-CAGCGAGATCGACAGCACGCAGAG
* * * *
13037022 GGGGATC-GGGCTGATCCCCAGCTTGTGCATTACGTCTCTCT
309 GGGGACCAGGTC-GATCCCCACCTTGCGCATTA--------T
* * * * ** *
13037063 AACCGGCCTCTCCGATCGACTGAGTGCCCGCACGTTGGTTTCATGGGTTGACTTAGGCATATGGA
1 -----GCCTCTCCGACCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGA
* * * * *
13037128 GGTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTG
61 GGTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTA
* * * * * * *** *
13037193 CAGTAGCAGGATCGACAGCATGCAGGGGGGATCGAACCGATCCCTG-GCTTATGCATTCTGCCAC
126 CGGCAGCAGGATCGACAG-ACGTA-GGGGGACCGGACCGATCCC-GAGCTTGCACATTCTGCCTC
* * * * * * * * * * *
13037257 TTCGGCCGGCTGAGCGACTGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCA
188 TCCGGCCGGCTGAGCGCCCGCACGCCCATTTCGTCGGTTGGCTCAAGCATACGGAGCTCATTCAA
* * * * *
13037322 TGTCTAAGCCCCA-CCGGAACTAAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCG
253 TGTCTAAGCCCCAGTC-GAACCAAGGGTTGTGGCAGCGAGATCGACAGCACGCAGAGGGGGACCA
*
13037386 GGTCGATCCCCAGCTTGCGCATTAT
317 GGTCGATCCCCACCTTGCGCATTAT
* * * * * * * * *
13037411 GCTTCTCCGATCGGCTCAGCGCCCGAACGCTCATTTCGTGGTTTGACTTAGGTATACAGAGTTCA
1 GCCTCTCCGACCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGGTCA
* * * *
13037476 TTCCCAG-C----C-T---AAG---ATT----G-----GATC-G---G-GCCAAGGGTTGCGGTA
66 TCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTACGGCA
* * * * * * *
13037515 GCAGGATCAACAGCATGTAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGGTC
131 GCAGGATCGACAG-ACGTAGGGGGACCGGACCGATCCCGAGCTTGCACATTCTGCCTCTCCGGCC
* * * * * * * * * * *
13037580 GACTGAGCACCCGTACACTCGTTTCGTGGGTTGGCTTACA-CATATGGAGTTCATTCCTAA--AC
195 GGCTGAGCGCCCGCACGCCCATTTCGTCGGTTGGCTCA-AGCATACGGAGCTCATT-C-AATGTC
* * ** ** ** * *
13037642 TAAGATCGGACCAGACCGAGGCTGGCGGCAGTAGGACCAGTAGCAGGATCGACAGTACGCAG-GG
257 TAAG--C--CCCAG-TCGAACCAAG-GGTTGT-GG--CAG-CG-A-GATCGACAGCACGCAGAGG
* * * * *
13037706 GGGACCGGGCCGATCCCTGA-CTTACGCATTTT
310 GGGACCAGGTCGATCCC-CACCTTGCGCATTAT
* ** * * * * * *
13037738 ACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTATCGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGACCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGGTCA
* * * * * * *
13037803 TACCCAGTCTAAGCATA-TAGAGTTCATTCCCAGTCTAAGATCAAACCTG-ATCGAGGGTTGCGA
66 TCCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCAGACC-GAACCAAGGGTTACGG
* * * * * *
13037866 CAGCAAGATCGACAGCACGTAGGGGGGATCGGGCCAATCCCCG-GCTTGCGCATTCTGCCTCTTC
129 CAGCAGGATCGACAG-ACGTA-GGGGGACCGGACCGAT-CCCGAGCTTGCACATTCTGCCTCTCC
* * * * * * * * * * *
13037930 GGTCGGTTGAGTGCCCACACGCCCGTTTCGT-GAGTTAGCTTACGCATAGGGAGTTCATTCCATG
191 GGCCGGCTGAGCGCCCGCACGCCCATTTCGTCG-GTTGGCTCAAGCATACGGAGCTCATTCAATG
* * * * * * *
13037994 TTTAAGCCCCAGTC-AGATCGAGGGTTGTGGCAGCGGGATCGACAGCATGTAGAGGGGGACCGGG
255 TCTAAGCCCCAGTCGA-ACCAAGGGTTGTGGCAGCGAGATCGACAGCACGCAGAGGGGGACCAGG
* * ** * *
13038058 CCGATCCTCGGCTTGTGCATTCT
319 TCGATCCCCACCTTGCGCATTAT
* * * ** * * * * *
13038081 GCCTTTCCTG-CCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTC
1 GCCTCTCC-GACCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGGTC
* * *
13038145 AT-TCCATCTCTAAGCATACGAAGTTCATTCCCTGTCTAAGA
65 ATCCCCA-GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
13038186 GTTTGAGCCA
Statistics
Matches: 1647, Mismatches: 380, Indels: 360
0.69 0.16 0.15
Matches are distributed among these distances:
316 88 0.05
317 30 0.02
318 3 0.00
320 3 0.00
321 4 0.00
322 10 0.01
323 2 0.00
325 3 0.00
326 1 0.00
327 89 0.05
328 16 0.01
331 3 0.00
332 1 0.00
333 1 0.00
334 3 0.00
335 1 0.00
336 2 0.00
337 1 0.00
338 1 0.00
339 3 0.00
340 4 0.00
341 101 0.06
342 18 0.01
343 170 0.10
344 3 0.00
345 3 0.00
346 2 0.00
347 3 0.00
348 13 0.01
349 14 0.01
350 15 0.01
351 6 0.00
352 12 0.01
353 51 0.03
354 110 0.07
355 241 0.15
356 156 0.09
357 18 0.01
358 19 0.01
359 12 0.01
360 21 0.01
361 17 0.01
362 12 0.01
363 2 0.00
364 2 0.00
365 7 0.00
366 84 0.05
367 31 0.02
368 228 0.14
369 2 0.00
370 5 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (341 bp):
GCCTCTCCGACCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGGTCA
TCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTACGGCA
GCAGGATCGACAGACGTAGGGGGACCGGACCGATCCCGAGCTTGCACATTCTGCCTCTCCGGCCG
GCTGAGCGCCCGCACGCCCATTTCGTCGGTTGGCTCAAGCATACGGAGCTCATTCAATGTCTAAG
CCCCAGTCGAACCAAGGGTTGTGGCAGCGAGATCGACAGCACGCAGAGGGGGACCAGGTCGATCC
CCACCTTGCGCATTAT
Found at i:13036781 original size:197 final size:197
Alignment explanation
Indices: 13036446--13036826 Score: 491
Period size: 197 Copynumber: 1.9 Consensus size: 197
13036436 AGGGTTGTGA
* * * * *
13036446 CAGCAGGATCGATAGCATGAAGGGGGGGACTGGGTCGATCCCCGGCTTACGCATTCTACCTCTCC
1 CAGCAGGATCGACAGCATCAAGGGGGGGACCGAGTCGATCCCCAGCTTACGCATTCTACCTCTCC
* * * * * *
13036511 AGTCGGCTGAGCGCTCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 AGCCGGCTGAGCACCCACACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGT
13036576 CTAAGCATACGGAGTTCATTCCCAGTCAAAGATC-AGACCAGACCGAGGGTTGCGACAACAGGAC
131 CTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGA-ACCAGACCGAGGGTTGCGACAACAGGAC
13036640 CAG
195 CAG
** *
13036643 CAGCAGGATCGACAGCA-CATAGGGGGGGACCGAGTCGATCCCCAGCTTGTGCATTCTACCTGTC
1 CAGCAGGATCGACAGCATCA-AGGGGGGGACCGAGTCGATCCCCAGCTTACGCATTCTACCTCTC
** * ** *
13036707 TGGCCGGCCT-AGCACCCGCACACTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATCCC-T
65 CAGCCGG-CTGAGCACCCACACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAT
* * *
13036770 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCG
129 -GTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGAACCAGACCGAGGGTTGCG
13036827 GCAGCAAGAT
Statistics
Matches: 157, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
196 2 0.01
197 152 0.97
198 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (197 bp):
CAGCAGGATCGACAGCATCAAGGGGGGGACCGAGTCGATCCCCAGCTTACGCATTCTACCTCTCC
AGCCGGCTGAGCACCCACACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGT
CTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGAACCAGACCGAGGGTTGCGACAACAGGACC
AG
Found at i:13036787 original size:26 final size:26
Alignment explanation
Indices: 13036751--13036803 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13036741 GTTGACTTAG
*
13036751 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
13036777 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13036803 G
1 G
13036804 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13038116 original size:159 final size:158
Alignment explanation
Indices: 13037851--13038151 Score: 379
Period size: 159 Copynumber: 1.9 Consensus size: 158
13037841 GATCAAACCT
*
13037851 GATCGAGGGTTGCGACAGCAAGATCGACAGCACGTAGGGGGGATCGGGCCAATCCCCGGCTTGCG
1 GATCGAGGGTTGCGACAGCAAGATCGACAGCACGTAGGGGGGACCGGGCCAATCCCCGGCTTGCG
* * * ** * *
13037916 CATTCTGCCTCTTCGGTCGGTTGAGTGCCCACACGCCCGTTTCGTGAGTTAGCTTACGCATAGGG
66 CATTCTGCCTCTTCGGCCAGCTGAGCACCCACACGCCCGTTTCGTGAGTTAGCTTACGCATACGA
13037981 AGTTCATTCCATGTTTAAGCCCCAGTCA
131 AGTTCATTCCATGTTTAAGCCCCAGTCA
* * ** * * * *
13038009 GATCGAGGGTTGTGGCAGCGGGATCGACAGCATGTAGAGGGGGACCGGGCCGATCCTCGGCTTGT
1 GATCGAGGGTTGCGACAGCAAGATCGACAGCACGTAG-GGGGGACCGGGCCAATCCCCGGCTTGC
* * * * * *
13038074 GCATTCTGCCT-TTCCTGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
65 GCATTCTGCCTCTT-CGGCCAGCTGAGCACCCACACGCCCGTTTCGTGAGTTAGCTTACGCATAC
13038138 GAAGTTCATTCCAT
129 GAAGTTCATTCCAT
13038152 CTCTAAGCAT
Statistics
Matches: 119, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
158 34 0.29
159 85 0.71
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GATCGAGGGTTGCGACAGCAAGATCGACAGCACGTAGGGGGGACCGGGCCAATCCCCGGCTTGCG
CATTCTGCCTCTTCGGCCAGCTGAGCACCCACACGCCCGTTTCGTGAGTTAGCTTACGCATACGA
AGTTCATTCCATGTTTAAGCCCCAGTCA
Found at i:13038168 original size:26 final size:26
Alignment explanation
Indices: 13038132--13038184 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13038122 GTTGGCTTAG
13038132 GCATACGAAGTTCATTCCATCTCTAA
1 GCATACGAAGTTCATTCCATCTCTAA
* *
13038158 GCATACGAAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATTCCATCTCTAA
13038184 G
1 G
13038185 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATCTCTAA
Found at i:13039746 original size:26 final size:26
Alignment explanation
Indices: 13039716--13039766 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13039706 TTGACTTAGG
13039716 CATACAGAGTTCATCCCCAGTCTAAA
1 CATACAGAGTTCATCCCCAGTCTAAA
*
13039742 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATCCCCAGTCTAA
13039767 GATCAGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAA
Found at i:13040193 original size:160 final size:158
Alignment explanation
Indices: 13039833--13040215 Score: 460
Period size: 160 Copynumber: 2.4 Consensus size: 158
13039823 TCGACCGGTC
* * * * * **
13039833 GAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCC
1 GAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGATC
* * * * * ** * *
13039898 TGACCGGATCGAGGGTTGTGGCAGCGGGACCGGTAGCACACAGAGGGGGACCAGTCTGATCCCCG
65 AGACCGGACCAAGGGTTGCGGCAGCAGGACCGACAGCACACAGAGGGGGACCAGACCGATCCCCG
* *
13039963 GCTTGCGCATTATGCCTCTCTAACCGGTT
130 GCTTGCGCATTATGCCTCTCCAACCGGCT
* * * * *
13039992 CAGCACCCGCACGATCATTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCTAGTCTAAGATC
1 GAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATC
* ** *
13040057 AGACCGGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGGGGACCAGACCGATCCCC
65 AGACCGGACCAAGGGTTGCGGCAGCAGGACCGACAGCACACA-GAGGGGGACCAGACCGATCCCC
*
13040122 GGCTTGCGCATTATGCCTCTCCAGCCGGCT
129 GGCTTGCGCATTATGCCTCTCCAACCGGCT
* *
13040152 GAGCACCCGCACGCTCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGAT
1 GAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGAT
13040216 TTTGAGTGAC
Statistics
Matches: 186, Mismatches: 35, Indels: 5
0.82 0.15 0.02
Matches are distributed among these distances:
159 83 0.45
160 101 0.54
161 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCA
GACCGGACCAAGGGTTGCGGCAGCAGGACCGACAGCACACAGAGGGGGACCAGACCGATCCCCGG
CTTGCGCATTATGCCTCTCCAACCGGCT
Found at i:13041428 original size:159 final size:158
Alignment explanation
Indices: 13041004--13041443 Score: 459
Period size: 159 Copynumber: 2.8 Consensus size: 158
13040994 CAATCCCTAA
* * * * * * *
13041004 CTTGCGCATTCTGCCTTTTCGACCGGTTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGC
1 CTTGCACATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGC
** * * * * ** *
13041069 ATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGTAGCGGGATCGGCAGC
66 ATACAGAGTTCATTCCATGTCTAAGCCCCAG-CTGACCGAGGGTTGTAGCAGTAGGATCGACAGC
* *
13041134 ACATAGAGGGGGATCGGGTCGATCCCCGG
130 ACACAGAGGGGGATCGAGTCGATCCCCGG
* * * * * * * *
13041163 CTTGCACATTATGCCTCTCCGACTGGCTTAACTCCTGAACGCTCATTTCATGGGTTGACTTAGGC
1 CTTGCACATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGC
* * ** * * *
13041228 ATACAGAGTTCATTCCCA-GTATAAGATCGGATCAGACCGAGGGTTGCAGCAGTAGGATCGACAG
66 ATACAGAGTTCATT-CCATGTCTAAG-CCCCAGCTGACCGAGGGTTGTAGCAGTAGGATCGACAG
* *
13041292 CACGCAGGGGGGGATCGAGTCGATCCCCGG
129 CACACAGAGGGGGATCGAGTCGATCCCCGG
* * * *
13041322 CTTGCACATTCTGTCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCGTTGGTTGGCTTAGGC
1 CTTGCACATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGC
* * *
13041387 ATACAAAGTTCATTCCATGTCTAAGCCCCAGCTGTATCGAGGGTTGTAGCAATAGGA
66 ATACAGAGTTCATTCCATGTCTAAGCCCCAGCTG-ACCGAGGGTTGTAGCAGTAGGA
13041444 CCGGCAGCGG
Statistics
Matches: 223, Mismatches: 54, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
158 7 0.03
159 211 0.95
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (158 bp):
CTTGCACATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGC
ATACAGAGTTCATTCCATGTCTAAGCCCCAGCTGACCGAGGGTTGTAGCAGTAGGATCGACAGCA
CACAGAGGGGGATCGAGTCGATCCCCGG
Found at i:13041606 original size:26 final size:26
Alignment explanation
Indices: 13041577--13041647 Score: 115
Period size: 26 Copynumber: 2.7 Consensus size: 26
13041567 AGGCATACAA
*
13041577 AGTTCATCCCCAGTCTAAGCATATGG
1 AGTTCATCCCCAGTCTAAGCATACGG
*
13041603 AGTTCATCCCCAGTCTAAACATACGG
1 AGTTCATCCCCAGTCTAAGCATACGG
*
13041629 AGTTCATTCCCAGTCTAAG
1 AGTTCATCCCCAGTCTAAG
13041648 ATTAGATCAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (26 bp):
AGTTCATCCCCAGTCTAAGCATACGG
Found at i:13042340 original size:26 final size:26
Alignment explanation
Indices: 13042304--13042356 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13042294 GTTGACTTAG
*
13042304 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
13042330 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
13042356 G
1 G
13042357 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:13043207 original size:25 final size:26
Alignment explanation
Indices: 13043179--13043230 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
13043169 GTTGACTTAG
13043179 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13043204 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13043230 G
1 G
13043231 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13043640 original size:159 final size:162
Alignment explanation
Indices: 13043253--13043711 Score: 551
Period size: 159 Copynumber: 2.9 Consensus size: 162
13043243 CGAGCATTAC
* * * * * * * *
13043253 GGTAGCGAGACCGACAACACACAGAAGGGGACCGGGCCGATCTTCGGCTTGCGCATTATGCCTAT
1 GGTAGCAAGATCGACAGCACACAGGA-GGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCT
* * * * * *
13043318 CCGACCTGTTCAATGC-C-CGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
65 CCGGCCGGCT-AA-GCGCTCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-C
*
13043381 CA-GTCTAAG---A-TCGAATCAAACTGAGGGTTGT
127 CATGTCTAAGCATATTCGAATCAAACTGAAGGTTGT
* ** * * *
13043412 GGTAGCAAGATCGACAGCACACAGGGGGGACCAAGTCGGTCCTTGGCTTGCACATTCTGCCTCTC
1 GGTAGCAAGATCGACAGCACACAGGAGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTC
13043477 CGGCCGGCTAAGCGCTCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
66 CGGCCGGCTAAGCGCTCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * *
13043542 TCTAAGCATATTTGGATCGAACTGAAGG-T-T
131 TCTAAGCATATTCGAATCAAACTGAAGGTTGT
* *
13043572 -GTAGCAAGATCGACAGCACACAGGAGGGACCGGGTCGATCCTCAGCTTACGCATTCTGCCTCTC
1 GGTAGCAAGATCGACAGCACACAGGAGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTC
* * *
13043636 CGGCCGGCTAAGCGCTCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTTATTCCATG
66 CGGCCGGCTAAGCGCTCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
13043701 TCTAAGCATAT
131 TCTAAGCATAT
13043712 GGAGTTCATT
Statistics
Matches: 258, Mismatches: 35, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
156 2 0.01
157 6 0.02
158 84 0.33
159 150 0.58
160 1 0.00
161 2 0.01
162 13 0.05
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (162 bp):
GGTAGCAAGATCGACAGCACACAGGAGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTC
CGGCCGGCTAAGCGCTCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
TCTAAGCATATTCGAATCAAACTGAAGGTTGT
Found at i:13044094 original size:26 final size:26
Alignment explanation
Indices: 13044059--13044111 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13044049 GTTGACTTAG
13044059 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13044085 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13044111 G
1 G
13044112 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13045122 original size:870 final size:869
Alignment explanation
Indices: 13042254--13045485 Score: 2974
Period size: 880 Copynumber: 3.7 Consensus size: 869
13042244 CTTCGATCGA
* * **
13042254 CCTCTCCGATCGG-TTGAGTGCCCGCACGCTTATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 CCTCTCCGACCGGCTT-AGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * *
13042318 TCCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGA-TCGGATCGAGGGTTGCGGT
65 TCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACT-AGATCGAGGGTTACAGT
* * * * * *
13042382 AGCAGGATCGGTAGCACGCAGGAGGGACTAGGCCGATCCCCGACTTGCACATTCTGCCTCTCTGG
129 AGCAGGATCGATAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGA
* * * * *
13042447 CCGGCTGAGTGCCTGCATGCCCATTTCATGGGTTGGTTTAGGAATAGGGAGTTCATTCCA---T-
194 CCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAGTCTA
* * * * ** * *
13042508 -GCCCCAGTCAGACCGAGGGTTGTGGCAGTGGGACTGGTAGCACGTAGAGGGGGA-CTGGGCTGA
259 AGCCCCAGTCAAACCGAGGGTTGTGGCAGCGGGACCGGCAGCACACAGAGGGGGATC-GAGCCGA
* ** ** * * *
13042571 TCCTCGGTTTATGCATTACACCTCTCCGG-TCGGCTCAGTGCC-CATACACTCGTTTCGTGGGTT
323 TCCTCGGCTTGCGCATTATGCCTCTCCGGCT-GGCTCAATGCCTGA-ACACTCGTTTCATGGGTT
* * * *
13042634 GACTTAGGCATACAAAGTTCATTCCCAATCTAAGATCAGACTGGACTGAGGGTTACGGCAGCAGG
386 GACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTTCGGCAGCAGG
* * * *
13042699 ATCGACAGCACGCAGGGGGGACCGGGCC-AGTCCTTGGCTTGCGCATTCTGCCTCT-CGGATCGG
451 ATCGACAGCACGCAGGGGGGACCAGGCCGA-TCCCTGACTTACGCATTCTGCCTCTCCGG-TCGG
* * * * *
13042762 TTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGG
514 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
* * * * *
13042827 GTACGGAGTTCATTCCCATTCTAAGATCGGACCAGACT-AAGGGTTACGGTATCAGGATTAGCAG
579 ATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAA-GGTT---G---C-GG--TAGC--
* * * * *
13042891 TAGGACCAGCAGCAGGATTGACAGCACGCAGAGGGGGATCGAGCCGATCCACGGCTTGCGCATTT
632 -AGGACCAGCAGCAGGATCGACAGCACGTA-AGGGGGACCGAGCCGATCCCCAGCTTGCGCATTT
* * * ** *
13042956 TGCCTCTCCGACCGATTGAGCGCACGCGCGCTCATTTCGTGGGTTAACTTAGGCATACAGAGTTC
695 TGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
* * *
13043021 ATTGCATGTCTAAACCCCAGCCGGACCGAGTGTTGTGGTAGCAGGACCGACAGCGGGATCGACAG
760 ATT-CATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAGC---A-C-A-AG
* * *
13043086 CAGGTAGAGGGGGATCGAGCCGATCCCCGGCTTGCGTATTATGCCTCTCCGGTTGG
818 CA-G-A-A-GGGGACCGAGCTGATCCCCGACTTGCGTATTATGCCTCTCCGGTTGG
* *
13043142 ---CT--GA---GC----T-CCCGCATGCTTGTTTCTTGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGACCGGCTTAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * ** *
13043194 -CCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGCATTACGGTAG
66 CCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTAGATCGAGGGTTACAGTAG
* * * * * * ** * * *
13043258 C-GAGACCGACAACACACAGAAGGGGACCGGGCCGATCTTCGGCTTGCGCATTATGCCTATCCGA
131 CAG-GATCGATAGCACGCAG-GGGGGACCAGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGA
* * * ** * * * * *
13043322 CCTGTTCAATGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
194 CCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCAGTCT
** * * * * ** * * * * * *
13043387 AAGATCGAATCAAACTGAGGGTTGTGGTAGCAAGATCGACAGCACACAG-GGGGGACCAAGTCGG
258 AAGCCCCAGTCAAACCGAGGGTTGTGGCAGCGGGACCGGCAGCACACAGAGGGGGATCGAGCCGA
* * * * * * *
13043451 TCCTTGGCTTGCACATTCTGCCTCTCCGGCCGGCT-AA-GCGCTCGCACGCTCATTTCATGGGTT
323 TCCTCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAATGC-CT-GAACACTCGTTTCATGGGTT
* * * * * *
13043514 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAT-ATTTGGATCGAACTGAAGG-TT--GT
386 GACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCA----GACCGGACTGAGGGTTTCGGC
* * * * * *
13043574 AGCAAGATCGACAGCACACAGGAGGGACCGGGTCGAT-CCTCAGCTTACGCATTCTGCCTCTCCG
445 AGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCTGA-CTTACGCATTCTGCCTCTCCG
* * * * * * *
13043638 GCCGGCTAAGCGCTCGCACACTCATTTCATGGGTTGGCTTAGGCATAC-AGAGTTTATTCCATGT
509 GTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGA-AGTTCATTCCATGT
* * * * *
13043702 CTAAGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGATTGAAGGTTCCGGCAACAGGACC
573 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAAGGTTGCGGTAGCAGGACC
* * * * * *
13043767 AGCAACAGGATCAACAGTACGTAGGGGGGACCAAGTCGAT-CCCAGGCTTGCGCATTTTGCCTCT
638 AGCAGCAGGATCGACAGCACGTAAGGGGGACCGAGCCGATCCCCA-GCTTGCGCATTTTGCCTCT
* ** * * * *
13043831 CTGACCGACCT-CTCACCCGGACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCA
702 CCGACCGA-CTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CA
** * * * *
13043895 TGTCTAAGCCTTAGCCGGACCAAGGGTTGTGGCAACAGGACCGGTAACGGGATTGATAACACGCA
765 TGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACC-G--AC---A--G--CACAAGCA
* * ** * * *
13043960 GAGGGGGACCGA-CTGATCCCCGTCTTGCACATTATGCCTCTTCAGTCGG
820 GAAGGGGACCGAGCTGATCCCCGACTTGCGTATTATGCCTCTCCGGTTGG
* * * * ** * *
13044009 CCTCTCTGGCCGACTGAGCACCCGCATACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGACCGGCTTAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * **
13044074 CCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAAGGTTACAACAG
66 CCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTAGATCGAGGGTTACAGTAG
* * * * * ** * * *
13044139 TAGGATCGATAGCATGTAGGGGGGATCGGGTGGATCCCCGGCTTGCACATTCTGCTTCTCCAACT
131 CAGGATCGATAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACC
* * * ***
13044204 GGCTGAGCGCTCGCATGTCCATTTCATGGGTTGGCTTAGTTTTAGGGAGTTCATTCCATGTCTAA
196 GGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCA-GTCTAA
** * * *
13044269 GCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGAGGGATCGAGCCGATC
260 GCCCCAGTCAAACCGAGGGTTGTGGCAGCGGGACCGGCAGCACACAGAGGGGGATCGAGCCGATC
* *
13044334 CCCGGCTTGTGCATTATGCCTCTCCGGCTGGCTCAATGCCTGAACACTCGTTTCATGGGTTGACT
325 CTCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAATGCCTGAACACTCGTTTCATGGGTTGACT
* * *
13044399 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTTTTGGTAGTAGGATC
390 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTTCGGCAGCAGGATC
** * *
13044463 GATGGCAC-TAGGGGGGACCAGGCCGTTCCCTGACTTACGCATTCTGCCTCTCCGGTCGGCTGAG
454 GACAGCACGCAGGGGGGACCAGGCCGATCCCTGACTTACGCATTCTGCCTCTCCGGTCGGCTGAG
* * * *
13044527 CGCCTGCACGCTCGTTTCGTGGGTTGGCTGAGGCATACGAAGTTCATTGCGTGTCTAAGCATATG
519 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATATG
* * * *
13044592 GAGTTCATTCCCAATCTAAGATCGGATCGGGATTGAAGGTTGCGGTAGCAGGACCAGTAGCAAGA
584 GAGTTCATTCCCAGTCTAAGATCGGA-CCGGATTGAAGGTTGCGGTAGCAGGACCAGCAGCAGGA
* * * * *
13044657 TCGACAGCACGTAAGGGGGACCGAGCCGATCCCCAACTTGCGCATTTTACGTCTCCGGCCGGCTG
648 TCGACAGCACGTAAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTTTGCCTCTCCGACCGACTG
* ** ** ** *
13044722 AGCGCCCGCCCAATCATTTAATCAGTTGGCTTAGGCATATGGAGTTCATTCAATGTCTAAGCCCC
713 AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-ATGTCTAAGCCCC
* * * * * *
13044787 AGCAGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACATG-A-AAAGGGACCGAGCTGATCCTC
777 AGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACAAGCAGAAGGGGACCGAGCTGATCCCC
*
13044850 GACTTGCGTATTATGCTTCTCCGGTTGG
842 GACTTGCGTATTATGCCTCTCCGGTTGG
* **
13044878 CCTCTCCGACCGGCTTAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGGCAAATAGAGTTCA
1 CCTCTCCGACCGGCTTAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTA-GGCATACGGAGTTCA
* * * * *
13044943 TCCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATTGGACTAGATCGAGGGTTGCAGTC
65 TCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTAGATCGAGGGTTACAGTA
* * *
13045008 GCAGGATCGATAGCACGCAGGGGGGACCAGGCTGATCCCCGGCTTGCACATTCTGCCTCTTCGGC
130 GCAGGATCGATAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGAC
* * *
13045073 CGGTTGAGCACCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
195 CGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCA-GTCTA
* * * * * * * * *
13045138 AGCCCCAGCCGAACAGAAGGTTATGGTAGCGGGACCGGCAACACACAGAGGGGGATCGGGCCAAT
259 AGCCCCAGTCAAACCGAGGGTTGTGGCAGCGGGACCGGCAGCACACAGAGGGGGATCGAGCCGAT
** * * * *
13045203 CCTCGGCTTGCGCATTATGCCTCTTTGGCTGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGAC
324 CCTCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAATGCCTGAACACTCGTTTCATGGGTTGAC
* * * * * * *
13045268 TTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATC
389 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTTCGGCAGCAGGATC
* * * ** * * *
13045333 GATAGCACGTAGGGGGGGACCAGGCCAATCCCCAACTTGA-GTATGCTGCCTCTTCGGTCGGCTG
454 GACAGCACGCA-GGGGGGACCAGGCCGATCCCTGACTT-ACGCATTCTGCCTCTCCGGTCGGCTG
* * *
13045397 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCGATGACTAAGCATA
517 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATA
13045462 TGGAGTTCATTCCCAGTCTAAGAT
582 TGGAGTTCATTCCCAGTCTAAGAT
13045486 TTTGAGCCAC
Statistics
Matches: 1867, Mismatches: 402, Indels: 166
0.77 0.17 0.07
Matches are distributed among these distances:
867 32 0.02
868 132 0.07
869 97 0.05
870 355 0.19
871 5 0.00
872 131 0.07
873 3 0.00
874 74 0.04
875 122 0.07
876 6 0.00
877 11 0.01
878 4 0.00
879 133 0.07
880 403 0.22
881 328 0.18
882 14 0.01
883 5 0.00
884 10 0.01
885 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (869 bp):
CCTCTCCGACCGGCTTAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
CCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTAGATCGAGGGTTACAGTAG
CAGGATCGATAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACC
GGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAGTCTAAG
CCCCAGTCAAACCGAGGGTTGTGGCAGCGGGACCGGCAGCACACAGAGGGGGATCGAGCCGATCC
TCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAATGCCTGAACACTCGTTTCATGGGTTGACTT
AGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTTCGGCAGCAGGATCGA
CAGCACGCAGGGGGGACCAGGCCGATCCCTGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATATGGA
GTTCATTCCCAGTCTAAGATCGGACCGGATTGAAGGTTGCGGTAGCAGGACCAGCAGCAGGATCG
ACAGCACGTAAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTTTGCCTCTCCGACCGACTGAGC
GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCATGTCTAAGCCCCAGCC
GGACCGAGGGTTGTGGCAGCAGGACCGACAGCACAAGCAGAAGGGGACCGAGCTGATCCCCGACT
TGCGTATTATGCCTCTCCGGTTGG
Found at i:13050688 original size:157 final size:157
Alignment explanation
Indices: 13050487--13050832 Score: 376
Period size: 157 Copynumber: 2.2 Consensus size: 157
13050477 CTTGGATTGG
* * * ** * **
13050487 CTTAGGCATAGGGAGTTCATTCCATGTCTAA-ACCCCAGCCGGACCGAGGGTTGTGGCAGCGGGA
1 CTTAGGCATACGAAGTTCATTCCATGTCTAAGATCGGA-CTGGACCGAGGGTTGTGGCAGCAAGA
** * * * * **
13050551 CCGGTAGCACGCAGAGAGGGACCGAGCCAAT-CTCGGCTTGCGCATTGTGCCTCTCCGGTCGGCT
65 CCGACAGCACACAG-G-GGGACCGAGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCT
* * *
13050615 CAGTACCGT-ACGTTCATTTCGTGGGTTGA
128 CAGCACCCTCACGTTCATTTCATGGGTTGA
* *
13050644 CTTATGCATACGAAGTTCATTCCCA-GTCTAAGATCGGACTGGACCGAGGGTTGTGGTAGCAAGA
1 CTTAGGCATACGAAGTTCATT-CCATGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCAAGA
* * * *
13050708 TCGACAGCACACAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGTTGA
65 CCGACAGCACACAGGGGGACCGAGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTCA
* *
13050773 GCGCCCTCACGTTCATTTCATGGGTTGG
130 GCACCCTCACGTTCATTTCATGGGTTGA
*
13050801 CTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CTTAGGCATACGAAGTTCATTCCATGTCTAAG
13050833 CATACGGAGT
Statistics
Matches: 155, Mismatches: 29, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
155 13 0.08
156 36 0.23
157 100 0.65
158 6 0.04
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
CTTAGGCATACGAAGTTCATTCCATGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCAAGAC
CGACAGCACACAGGGGGACCGAGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTCAG
CACCCTCACGTTCATTTCATGGGTTGA
Found at i:13051151 original size:12 final size:12
Alignment explanation
Indices: 13051134--13051159 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
13051124 TACCCATTAA
13051134 AGTGTATGAAAT
1 AGTGTATGAAAT
13051146 AGTGTATGAAAT
1 AGTGTATGAAAT
13051158 AG
1 AG
13051160 CTGAAAGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.31
Consensus pattern (12 bp):
AGTGTATGAAAT
Found at i:13051708 original size:158 final size:156
Alignment explanation
Indices: 13051465--13051980 Score: 509
Period size: 158 Copynumber: 3.3 Consensus size: 156
13051455 TGAGCATTCA
*
13051465 CACGCTC-TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGAC-GAAC
*
13051529 TGAGGGTTGCGGCAGTAGGATCGGCAGCACGTAAGGGGGACTGGGCCGATCCCAGGCTTGCGTAT
64 TGAGGGTTGCGGCAGTAGGATCGGCAGCACGTAAGGGGGACTGGGCCGATCCCAGGCTTGCGCAT
* * *
13051594 TCTGCCTATCCGACCGACTGAGCACCTG
129 TCTGCCTCTCCGATCGACTGAGCGCCTG
* * * ** *
13051622 CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAAC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACGAAC
* * * * * * * * * * *
13051687 CGAGGGTTGTGGCAGTGGGATCGGCAGCATGCAGAAGAGGACCGAGCCGATCCCCGACTTGCGCA
64 TGAGGGTTGCGGCAGTAGGATCGGCAGCACGTA-AGGGGGACTGGGCCGATCCCAGGCTTGCGCA
* * * *
13051752 TTATGCCTCTCCGGTCGGCTCAGCGCCTG
128 TTCTGCCTCTCCGATCGACTGAGCGCCTG
* ** * * * * *
13051781 CACGCTCATTTTTTGGGTTAACTTAGGCATAAGGAGTTCATTCCAGTCTAAGATCGGGCTAGACT
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACGA-ACT
* * * ** ** *
13051846 GAGGGTTGCAGCAGTAGGATCGACAGCAC-TTAGAGGGGA-TCGGGTTGATCCTTGGCTTGTGCA
65 GAGGGTTGCGGCAGTAGGATCGGCAGCACGTAAG-GGGGACT-GGGCCGATCCCAGGCTTGCGCA
* * *
13051909 TTCTGCCTCT-CTAGTCGATTGAGCGCCCG
128 TTCTGCCTCTCCGA-TCGACTGAGCGCCTG
*
13051938 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
13051981 TATATCTAAG
Statistics
Matches: 282, Mismatches: 69, Indels: 16
0.77 0.19 0.04
Matches are distributed among these distances:
156 2 0.01
157 89 0.32
158 103 0.37
159 88 0.31
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.25
Consensus pattern (156 bp):
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACGAACTG
AGGGTTGCGGCAGTAGGATCGGCAGCACGTAAGGGGGACTGGGCCGATCCCAGGCTTGCGCATTC
TGCCTCTCCGATCGACTGAGCGCCTG
Found at i:13052013 original size:26 final size:26
Alignment explanation
Indices: 13051964--13052016 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13051954 GTTGGCTTAG
*
13051964 GCATACGGAGTTCATTCTATATCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13051990 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13052016 G
1 G
13052017 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13052184 original size:26 final size:26
Alignment explanation
Indices: 13052147--13052198 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13052137 GTTGACTTAG
*
13052147 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
13052173 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13052199 CATCAGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13052354 original size:184 final size:183
Alignment explanation
Indices: 13051886--13052357 Score: 590
Period size: 183 Copynumber: 2.6 Consensus size: 183
13051876 TAGAGGGGAT
* * *
13051886 CGGGTTGATCCTTGGCTTGTGCATTCTGCCTCTCTAGTCGATTGAGCGCCCGCACGCTCGTTTCA
1 CGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCAGTCGATTGAGCGCCCGCACGCTCGTTTCA
* * * *
13051951 TGGGTTGGCTTAGGCATACGGAGTTCATT-CTATATCTAAGCATACGGAGTTCATTCCCAATCTA
66 TGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCATACGAAGTTCATTCCCAATCTA
* * *
13052015 AGATCAGACCGAATCGAGGGTTGCGGTAGCAGGATCAGCAGCACGCAGGGGGAC
130 ACATCAGACCGAATCGAGGGTTGCGGTAGCAGGATCAGCAGCACACAGGAGGAC
* * * * * * * *
13052069 TGAGCCGAT-CCTCGGCTTATGTATTCTGCCTCTCCAGTCGACTGAGCACCCGCACGCTCGTTTT
1 CGGGTCGATCCCT-GGCTTGTGCATTCTGCCTCTCCAGTCGATTGAGCGCCCGCACGCTCGTTTC
* * *
13052133 GTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTA
65 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTA
* * * *
13052198 ACATCAGACC-AGATCGAGGGTTGCGGTAGTAGGATTAGTAGCATACAGTGAGGAC
130 ACATCAGACCGA-ATCGAGGGTTGCGGTAGCAGGATCAGCAGCACACAG-GAGGAC
* * * * * * *
13052253 CGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCAGTCGGTTCAGTGCCCGAACGCTCATTTCA
1 CGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCAGTCGATTGAGCGCCCGCACGCTCGTTTCA
*
13052318 TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
66 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
13052358 ATCAGACCAG
Statistics
Matches: 241, Mismatches: 43, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
182 3 0.01
183 145 0.60
184 90 0.37
185 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.27
Consensus pattern (183 bp):
CGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCAGTCGATTGAGCGCCCGCACGCTCGTTTCA
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAA
CATCAGACCGAATCGAGGGTTGCGGTAGCAGGATCAGCAGCACACAGGAGGAC
Found at i:13052516 original size:26 final size:26
Alignment explanation
Indices: 13052487--13052539 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13052477 GTTAGCTTAG
13052487 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATATGGAGTTCATTCCAAGTCTAA
* **
13052513 GCATGTGGAGTTCATTCCCTGTCTAA
1 GCATATGGAGTTCATTCCAAGTCTAA
13052539 G
1 G
13052540 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCAAGTCTAA
Found at i:13052719 original size:26 final size:26
Alignment explanation
Indices: 13052683--13052737 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
13052673 GTTGACCTAG
* *
13052683 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
13052709 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
13052735 GCA
1 GCA
13052738 GCACGTAGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:13053006 original size:26 final size:26
Alignment explanation
Indices: 13052970--13053022 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13052960 TTTGGCTTAG
13052970 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13052996 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13053022 G
1 G
13053023 ATTTTTTGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13054747 original size:26 final size:26
Alignment explanation
Indices: 13054710--13054762 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13054700 GTTGACTTAG
13054710 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13054736 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
13054762 G
1 G
13054763 ATCTTATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13055822 original size:158 final size:157
Alignment explanation
Indices: 13055533--13056192 Score: 429
Period size: 159 Copynumber: 4.2 Consensus size: 157
13055523 GGTCGATTGA
* ** * ** * * * *
13055533 ATCGGACCGAGGGTTGTGGCAGCGGGATTGACAGCATGCAGAGGGGGACCGAGTCGATCC-CTAG
1 ATCGGACTGAGGGTTGTGGCAGTAGGATCGACAGCACACAGA-GGGGATCGGGCCGATCCTCGA-
* * * ** ** * *
13055597 CTTGCGCATTATGCCTCTCCGACCAGCTCAACG-CTCGTACGCTCGTTTTGTGGGTTGACTTAGG
64 CTTACGCATTCTGCCTCTCGGACTGGCTCAGTGAC-CGTGCGCTCATTTTGTGGGTTGACTTAGG
13055661 CATACGAAGTTCATTCCTAGTCTAAGATCAG
128 CATACGAAGTTCATTCC-AGTCTAAGATCAG
* * * * *
13055692 ATCGGACTGAGGGTTGCGACAGTAGGATTGACAGCACACAGAGGGGATCGGGTCGATCTTCGACT
1 ATCGGACTGAGGGTTGTGGCAGTAGGATCGACAGCACACAGAGGGGATCGGGCCGATCCTCGACT
** * *
13055757 TGTGCATTCTGCCTCTCCGGTC-GG-TCGAGTGCCCGCATGC-C-CATTTTGTGGGTTGACTTAG
66 TACGCATTCTGCCTCT-CGGACTGGCTC-AGTGACCG--TGCGCTCATTTTGTGGGTTGACTTAG
* * **
13055818 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
127 GCATACGAAGTTCATTCCA-GTCTAAG-ATCAG
* ** * * *
13055851 -TC-GAATCGAGGGTTGTGGCAGCGGGA-CCAGCAGCACGCAGAGAGGGATTGGGCCGATCCTCG
1 ATCGGACT-GAGGGTTGTGGCAGTAGGATCGA-CAGCACACAGAG-GGGATCGGGCCGATCCTCG
* ** *
13055913 ACTTACGCATTTTGCCTCTTTGACTGGCTCAGTGACCGTGCGCTCGTTTTGTGGGTTGACTTAGG
63 ACTTACGCATTCTGCCTCTCGGACTGGCTCAGTGACCGTGCGCTCATTTTGTGGGTTGACTTAGG
* *
13055978 TATAC-AGAGTTCATTCCCAGTGTAAGATCAG
128 CATACGA-AGTTCATT-CCAGTCTAAGATCAG
* * * * * * *
13056009 ACCGGACTGAGGGTTGTGGTAGTAGGATCGACAGCACACAGGGGGTGACCAGGCCGGTCC-CGGC
1 ATCGGACTGAGGGTTGTGGCAGTAGGATCGACAGCACACAGAGGG-GATCGGGCCGATCCTCGAC
* * * * * * *
13056073 TTACGCATTCTACCTCTTC--AGTAGGCTAAG-CACC-CGCAAGCTCGTTTCGTGGGTTG-CTTA
65 TTACGCATTCTGCCTC-TCGGACT-GGCTCAGTGACCGTGC--GCTCATTTTGTGGGTTGACTTA
*
13056133 GGCATAC-AGAGTTCATTCCCAGCCTAAGATCAG
126 GGCATACGA-AGTTCATT-CCAGTCTAAGATCAG
* **
13056166 A-CTGGACCGAGGGTTACGGCAGTAGGA
1 ATC-GGACTGAGGGTTGTGGCAGTAGGA
13056193 CCAGTAGTAG
Statistics
Matches: 398, Mismatches: 77, Indels: 54
0.75 0.15 0.10
Matches are distributed among these distances:
156 3 0.01
157 70 0.18
158 152 0.38
159 161 0.40
160 12 0.03
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (157 bp):
ATCGGACTGAGGGTTGTGGCAGTAGGATCGACAGCACACAGAGGGGATCGGGCCGATCCTCGACT
TACGCATTCTGCCTCTCGGACTGGCTCAGTGACCGTGCGCTCATTTTGTGGGTTGACTTAGGCAT
ACGAAGTTCATTCCAGTCTAAGATCAG
Found at i:13056163 original size:157 final size:162
Alignment explanation
Indices: 13055954--13056324 Score: 423
Period size: 170 Copynumber: 2.3 Consensus size: 162
13055944 GTGACCGTGC
* ** *
13055954 GCTCGTTTTGTGGGTTGACTTAGGTATACAGAGTTCATTCCCAGTGTAAGATCAGACCGGACTGA
1 GCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGCCTAAGATCAGACCGGACCGA
* *
13056019 GGGTT-GT-G-GTAGTAGGATCGACAGCACACAGGG-GGTGACCAGGCCGGT-CCCGGCTTACGC
66 GGGTTAGTAGAGTAGTAGGATCGACAGCACACAGGGTGG-GACCAGGCCGATCCCCGACTTACGC
* *
13056079 ATTCTACCTCTTCAG-TAGGCTAAGCACCCGCAA
130 ATTCTACCTCTCCAGCCA-GCTAAGCACCCGCAA
* *
13056112 GCTCGTTTCGTGGGTTG-CTTAGGCATACAGAGTTCATTCCCAGCCTAAGATCAGACTGGACCGA
1 GCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGCCTAAGATCAGACCGGACCGA
* **
13056176 GGGTTACGGCAGTAGGACCAGTAGTAGGATCGACAGCACACAGGGTGGGACCGGGTTGATCCCCG
66 GGGTT-----AGTA-G---AGTAGTAGGATCGACAGCACACAGGGTGGGACCAGGCCGATCCCCG
* * * * *
13056241 ACTTATGCATTCTACCTGTCCAGCCAGCTGAGCACTCGCAC
122 ACTTACGCATTCTACCTCTCCAGCCAGCTAAGCACCCGCAA
*
13056282 GCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA
1 GCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA
13056325 ATCTAAGCAT
Statistics
Matches: 177, Mismatches: 20, Indels: 19
0.82 0.09 0.09
Matches are distributed among these distances:
157 47 0.27
158 16 0.09
163 2 0.01
165 1 0.01
169 33 0.19
170 53 0.30
171 25 0.14
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (162 bp):
GCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGCCTAAGATCAGACCGGACCGA
GGGTTAGTAGAGTAGTAGGATCGACAGCACACAGGGTGGGACCAGGCCGATCCCCGACTTACGCA
TTCTACCTCTCCAGCCAGCTAAGCACCCGCAA
Found at i:13057619 original size:158 final size:158
Alignment explanation
Indices: 13057349--13057851 Score: 475
Period size: 158 Copynumber: 3.2 Consensus size: 158
13057339 CCCGAACTAA
* * * * ** * *
13057349 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGCGTTGCGGTAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCATCAGACCAGACCGAGGGTTGCGGCAACAGGACCAA
* * * *
13057412 TAGCACGT-AGGGGGACCGGGCCGATCCTTGGCTTGCGCATTCTACCTCTCTGATCGGTCGAGCA
65 TAGCACGTGAGGGGGATCGGGCTGATCCTCGACTTGCGCATTCTACCTCTC-GATCGGTCGAGCA
* *
13057476 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * **
13057506 GCATACAGAGTTCATT-CATGTCTAAGCCTTAG-CCAGATCGAGGGTTGTGGCAACAGGACCTGT
1 GCATACGGAGTTCATTCCATGTCTAAGCATCAGACCAGACCGAGGGTTGCGGCAACAGGACCAAT
* * * * *
13057569 AGCACGTAGAGGGGGATCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGGTTGGCTC-AGC
66 AGCACGT-GAGGGGGATCGGGCTGATCCTCGACTTGCGCATTCTACCTCT-CGATCGG-TCGAGC
* * *
13057633 ACCCGCACGCTTGTTTTGTGGGTTGACTTAG
128 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * **
13057664 GCATACGGAGTTCATTCCCA-GTCTATG-ATCGGACCGGACCGAGGGTTGCGGTAGCAGGTTCAA
1 GCATACGGAGTTCATT-CCATGTCTAAGCATCAGACCAGACCGAGGGTTGCGGCAACAGGACCAA
* * * * *
13057727 TAGCACGCGAGGGGGATCGGG-TCGATCCTCGACTTGCGCAATCTACCTCTCCAGTCGGTTGAGG
65 TAGCACGTGAGGGGGATCGGGCT-GATCCTCGACTTGCGCATTCTACCTCTCGA-TCGGTCGAGC
* * *
13057791 ACCCGTACGTTCGATTCGTGGGTTGGCTTAG
128 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
13057822 GCATACGGAGTTCATTCCATGTCTAAGCAT
1 GCATACGGAGTTCATTCCATGTCTAAGCAT
13057852 AAGGAGTTCA
Statistics
Matches: 273, Mismatches: 59, Indels: 26
0.76 0.16 0.07
Matches are distributed among these distances:
155 2 0.01
156 34 0.12
157 24 0.09
158 172 0.63
159 39 0.14
160 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCATCAGACCAGACCGAGGGTTGCGGCAACAGGACCAAT
AGCACGTGAGGGGGATCGGGCTGATCCTCGACTTGCGCATTCTACCTCTCGATCGGTCGAGCACC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13057851 original size:26 final size:26
Alignment explanation
Indices: 13057822--13057874 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13057812 GTTGGCTTAG
*
13057822 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
13057848 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
13057874 G
1 G
13057875 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:13058049 original size:26 final size:25
Alignment explanation
Indices: 13058019--13058070 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
13058009 GTTGGCTTAG
13058019 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
** *
13058045 GCATATGGAGTTCATTCTAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
13058070 G
1 G
13058071 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:13058209 original size:195 final size:197
Alignment explanation
Indices: 13057809--13058241 Score: 604
Period size: 195 Copynumber: 2.2 Consensus size: 197
13057799 GTTCGATTCG
13057809 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAA
* * * *
13057874 GATCGGATCGGATCGAAGGTTGCGGTAGTAGTACCAGCAGTAAGATCAACAGCACGCAAGAGGGG
66 GATCGGATCAGACCGAAGGTTGCGGTAGAAGTACCAGCAGCAAGATCAACAGCACGCAAGAGGGG
* *
13057939 ACTGGGCCAATCCCTGGCTTACGCATTCTGCCTCTCTGTCAGACTGAGTGCTCGCACGCTCGTTT
131 ACTGGGCCAATCCCTGGCTTACACATTCTGCCTCTCTGTCAGACTGAGCGCTCGCACGCTCGTTT
13058004 CA
196 CA
* * *
13058006 TGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATT-CTAGTCTAA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAA
* * * *** * *
13058070 GATCGGATCAGACCGAGGGTTGCGGTAGCAAG-ACCAGCGGCAGGATTGGCAGCACGC-GGGGGG
66 GATCGGATCAGACCGAAGGTTGCGGTAG-AAGTACCAGCAGCAAGATCAACAGCACGCAAGAGGG
* * * ** * *
13058133 GACTGGGCTAATCCCTGGCTTGCACATTCTGCCTCTTTGGTC-GGTTGAGCGCTCGTATGCTCGT
130 GACTGGGCCAATCCCTGGCTTACACATTCTGCCTCTCT-GTCAGACTGAGCGCTCGCACGCTCGT
13058197 TTCA
194 TTCA
13058201 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13058242 CCCAGTCGGA
Statistics
Matches: 209, Mismatches: 25, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
195 99 0.47
196 55 0.26
197 55 0.26
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.26
Consensus pattern (197 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAA
GATCGGATCAGACCGAAGGTTGCGGTAGAAGTACCAGCAGCAAGATCAACAGCACGCAAGAGGGG
ACTGGGCCAATCCCTGGCTTACACATTCTGCCTCTCTGTCAGACTGAGCGCTCGCACGCTCGTTT
CA
Found at i:13058434 original size:26 final size:26
Alignment explanation
Indices: 13058398--13058450 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13058388 GTTGACTTAG
*
13058398 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13058424 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13058450 G
1 G
13058451 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13059304 original size:26 final size:26
Alignment explanation
Indices: 13059254--13059306 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13059244 GTTGGCTTAG
*
13059254 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13059280 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13059306 G
1 G
13059307 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13059476 original size:354 final size:355
Alignment explanation
Indices: 13058677--13059466 Score: 869
Period size: 354 Copynumber: 2.2 Consensus size: 355
13058667 TCGATCCATT
* * * ** * * *
13058677 ACTTGCGCATTATGCCTCTTCGGTAGGCTTAGCGCCCGAACGCTCATTTCGTGGGTTGACTAAGG
1 ACTTACGCATTATGCCTCTCCAGCCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGG
** *
13058742 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACTGAGGGTTGTGGTAGTAGGATGGACAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACTGAGGGTTGCAGTAGCAGGATGGACAG
* ** * * *
13058807 CACGCAGTGGGGGACTGGGACGGTCCCCAGCTTGTGCATTCTACCTCTCTGGCCAGCTGAGCGCC
131 CACGCAGAGGGGGACCAGGACGATCCCCAGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCGCC
* * *
13058872 CGCACACTCGTTTCATTGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATTCAGAGT
196 CGCACACTCATTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGT
* * * ** * * * *
13058937 TCATTCCCAGTTTATGATTGGATCGGACTGATGGTTGTGGTAGCAGAACCAGCAATAGGATCGGT
261 TCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGTGATAGCAGAACCAACAATAGGATCGGT
* *
13059002 AGCACGTAAGGGGGATCGAGCTGATCCTCA
326 AGCACGCAAGGGGGATCCAGCTGATCCTCA
* * * *** *
13059032 ACTTGCGCATTATGCCTCTCCAGCCGGTTCAGCACCCGTGTGCTCGTTTCGTGGGTTGATTTAGG
1 ACTTACGCATTATGCCTCTCCAGCCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGG
* * *
13059097 CATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGAA-TCGAGGGTTGCAGTCGCAGGATTGAC
66 CATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GAACT-GAGGGTTGCAGTAGCAGGATGGAC
* * *
13059160 AGCATGCA-AGGGGGACCAGGTCGATCCTC-GACTTGCGCATTCTACCTCTCCGGCC-GACTGAG
129 AGCACGCAGAGGGGGACCAGGACGATCCCCAG-CTTGCGCATTCTACCTCTCCGGCCAG-CTGAG
* ** * * *
13059222 CGCCTGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
192 CGCCCGCACACTCATTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATACA
* * * * *
13059287 GAGTTCATTCCCAATCTAAGATCAGACCGGATTGAGGGTTGTGATAGTAGGACCAATAGTAGGAT
257 GAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGTGATAGCAGAACCAACAATAGGAT
* * *
13059352 C-GTCAGTACGCAAGGGGGA-CCAGGTCGATCCTCG
322 CGGT-AGCACGCAAGGGGGATCCAGCT-GATCCTCA
* * * * *
13059386 GCTTACGCATTATGCCT-TACC-GACCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTA
1 ACTTACGCATTATGCCTCT-CCAG-CCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTA
*
13059449 GGCATACAGAGTTCATTC
64 GGCATACGGAGTTCATTC
13059467 TATGTCTAAG
Statistics
Matches: 359, Mismatches: 68, Indels: 17
0.81 0.15 0.04
Matches are distributed among these distances:
353 10 0.03
354 237 0.66
355 112 0.31
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (355 bp):
ACTTACGCATTATGCCTCTCCAGCCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACTGAGGGTTGCAGTAGCAGGATGGACAG
CACGCAGAGGGGGACCAGGACGATCCCCAGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCGCC
CGCACACTCATTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGT
TCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGTGATAGCAGAACCAACAATAGGATCGGT
AGCACGCAAGGGGGATCCAGCTGATCCTCA
Found at i:13061911 original size:26 final size:26
Alignment explanation
Indices: 13061875--13061927 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13061865 GTTGACTTAG
13061875 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13061901 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13061927 G
1 G
13061928 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13062936 original size:26 final size:26
Alignment explanation
Indices: 13062900--13062951 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13062890 TTGGCTTAGC
13062900 CATACAGAGTTCATT-CCATGTCTAAG
1 CATACAGAGTTCATTCCCA-GTCTAAG
13062926 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
13062952 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:13063314 original size:26 final size:26
Alignment explanation
Indices: 13063278--13063330 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13063268 GTTGACTTAG
13063278 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13063304 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13063330 G
1 G
13063331 ATCGAACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13063851 original size:26 final size:26
Alignment explanation
Indices: 13063821--13063873 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13063811 GTTGACTTAG
13063821 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
13063847 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
13063873 G
1 G
13063874 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:13064199 original size:26 final size:27
Alignment explanation
Indices: 13064169--13064219 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
13064159 GGCTTAGCAT
13064169 TACGGAG-TTCATT-CCATGTCTAAGCG
1 TACGGAGTTTCATTCCCA-GTCTAAGCG
13064195 TACGGAGTTTCATTCCCAGTCTAAG
1 TACGGAGTTTCATTCCCAGTCTAAG
13064220 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 7 0.30
27 13 0.57
28 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.31
Consensus pattern (27 bp):
TACGGAGTTTCATTCCCAGTCTAAGCG
Found at i:13065007 original size:26 final size:26
Alignment explanation
Indices: 13064978--13065030 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13064968 GTTGACTTAG
*
13064978 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
* *
13065004 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
13065030 G
1 G
13065031 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGCCTAA
Found at i:13065529 original size:26 final size:26
Alignment explanation
Indices: 13065479--13065531 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13065469 GTTGGCTTAG
*
13065479 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
13065505 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
13065531 G
1 G
13065532 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:13066772 original size:26 final size:25
Alignment explanation
Indices: 13066736--13066787 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
13066726 GTTGGCTTAG
13066736 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
13066762 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
13066787 G
1 G
13066788 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:13068128 original size:159 final size:153
Alignment explanation
Indices: 13067677--13068183 Score: 416
Period size: 159 Copynumber: 3.2 Consensus size: 153
13067667 CCTGATCTAA
*
13067677 GCATACGGAGTTCATTCCCA-GTCTAAGAT-AGGACCGGACCGAGGGTT-TCGACAGCAAGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCA-GACC-GA-CGAGGGTTGT-GGCAGC-AGATCG
* * * * * *
13067739 ACAGCACGCAGAGGGGACCGAGCCGATCCTCGGCTTGCGCATTTTACCTCTCCGGCCGGCTGAGC
60 ACAGCATGAAG-GGGGACAG-GCCGATCCTCGACTTGCGCATTTTGCCTCTCCGACCGGCTGAGC
* * * * *
13067804 GCTCGCACGCCCGTTTCATGGGTTGGCTTAG
123 GCCCGTACGCTCGTTTCGTGGGTTGACTTAG
* * ** *
13067835 GCATAGGGAGGTCATTCCATGTCTAAGCCCTAG-CCGAAGCGAGGGTTGTGGCAGCAGGA-CTGC
1 GCATACGGAGTTCATTCCATGTCTAAGATC-AGACCG-A-CGAGGGTTGTGGCAGCA-GATC-GA
* * * * * * *
13067898 CAGCATGCAGAAGGGGACTGGGCCGATCC-CCAGCTTGCACATTATGCCTCTCCGATCGGCTCAG
61 CAGCATG-A-AGGGGGAC-AGGCCGATCCTCGA-CTTGCGCATTTTGCCTCTCCGACCGGCTGAG
* *
13067962 CGACCGTACGCTCATTTCGTGGGTTGACTTAG
122 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
*
13067994 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGTATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACC-GAC-GAGGGTTGTGGCAGCAG-ATCGAC
* * * *
13068058 AGCATGTAAGGGGGATCAGGCCGATCCTCGACTTACGTATTTTGCCTCTCTGACCGGCTGAGTGG
62 AGCATG-AAGGGGGA-CAGGCCGATCCTCGACTTGCGCATTTTGCCTCTCCGACCGGCTGAG-CG
*
13068123 CCCGTACGCACACTCGTTTCGTGGGTTGCCTTAG
124 CCCGTACG----CTCGTTTCGTGGGTTGACTTAG
*
13068157 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13068184 CATACAAAGT
Statistics
Matches: 276, Mismatches: 48, Indels: 45
0.75 0.13 0.12
Matches are distributed among these distances:
157 6 0.02
158 90 0.33
159 127 0.46
160 8 0.03
162 3 0.01
163 42 0.15
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (153 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGACGAGGGTTGTGGCAGCAGATCGACAGCA
TGAAGGGGGACAGGCCGATCCTCGACTTGCGCATTTTGCCTCTCCGACCGGCTGAGCGCCCGTAC
GCTCGTTTCGTGGGTTGACTTAG
Found at i:13068193 original size:26 final size:26
Alignment explanation
Indices: 13068157--13068209 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13068147 GTTGCCTTAG
*
13068157 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
13068183 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
13068209 G
1 G
13068210 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:13068569 original size:26 final size:26
Alignment explanation
Indices: 13068539--13068598 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
13068529 GTTGACTTAG
13068539 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13068565 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13068591 G-AT-CGGAG
1 GCATACGGAG
13068599 CAGACCGAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
24 5 0.15
25 2 0.06
26 26 0.79
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13068770 original size:886 final size:881
Alignment explanation
Indices: 13067091--13068927 Score: 2319
Period size: 886 Copynumber: 2.1 Consensus size: 881
13067081 CGCCCACACT
* * * **
13067091 CTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAG
1 CTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * *
13067156 GGTTGTGGTAGCAAGATCGACAGCACGCAGGGGGGACCGGGCTGACCCCCGGCTTATGCATTCTG
66 GGTTGTGGTAGCAAGATCGACAGCACGCAAGGGGGACCAGGCCGACCCCCGACTTACGCATTCTG
* * * * * *
13067221 CCTCTCTGGCTGGCTGAGTGCCCGTACGCTCATTTCTTGGGTTGGCTTAGGCATATGGAGTTCAT
131 CCTCTCTGACCGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGCCTTAGGCATACGAAGTTCAT
* * *
13067286 TCCATGTCTAGGCATACACAGTTCATTCCCAGTCTAAGATCGAACCGAATCCGAGGGGTTGTGGC
196 TCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGAACCGAATCCGAGGAGTTGTGGC
* * *
13067351 TACAGGACCAACAATAGGATCGGTAGCACGTAGGGGGGACCGAGCCGATCCCCAGCTTGCACATT
261 TACAGGACCAACAACAGGATCGGCAGCACGTAGGGGGGACCGAGCCGATCCCCAACTTGCACATT
* * * * *
13067416 CTGCCTCTCCTATCGGTTGAACACCCGCACCCTCATTTCCTGGGTTGGCTTAGCATACGGAGTTC
326 CTGCCTCTCCGACCAGTTGAACACCCGCACCCTCATTTCCTGGCTGGGCTTAGCATACGGAGTTC
*
13067481 ATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTATGGCAGCAGGACCGGTAATCGGATCGACAG
391 ATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGCAGGACCGGTAATCGGATCGACAG
*
13067546 CACGCAGAGGGGACCGGGCTGATCCCCGGCTTGGACATTATGCCTCTCCGACCGACCTCTCCGGT
456 CACGCAGAGGGGACCGGGCTGATCCCCGGCTTGCACATTATGCCTCTCCGACCGACCTCTCCGGT
* * * * *
13067611 CGGTTGAGCGCCTGTACGCTTGTTTCATGGGTTGACTTAGGCATATAGAGTTCATCCCTGATCTA
521 CGGTTGAGCCCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCAGATCTA
*
13067676 AGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTTCGACAGCAAGATCGAC
586 AGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTTCGACAGCAAGATCGAC
* * * *
13067741 AGCACGCAGAGGGGACCGAGCCGATCCTCGGCTTGCGCATTTTACCTCTCCGGCCGGCTGAGCGC
651 AGCACGCAGAGGGGACCGAGCCGATCCCCGGCTTGAGCATTCTACCTCTCCGACCGGCTGAGCGC
* *
13067806 TCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGGTCATTCCATGTCTAAGCCCTAGCCG
716 TCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGGTCATTCCATGTCTAAGCCCCAGCCG
* * *
13067871 AAGCGAGGGTTGTGGCAGCAGGA-CTGCCAGCATGCAGAAGGGGACTGGGCCGATCCCCAGCTTG
781 AAGCGAAGGTTGTGGCAGCAGGACCAG-CAGCATGCAGAAGGGGACCGGGCCGATCCCCAGCTTG
*
13067935 CACATTATGCCTC-TCCGATCGGCTCAGCGACCGTACG
845 CACATTATGCCTCTTCCGAT-GGCTCAGCGACCGCACG
* *
13067972 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAG
1 CTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * * * *
13068037 GGTTGTGGTAGC-AGTATCGACAGCATGTAAGGGGGATCAGGCCGATCCTCGACTTACGTATTTT
66 GGTTGTGGTAGCAAG-ATCGACAGCACGCAAGGGGGACCAGGCCGACCCCCGACTTACGCATTCT
*
13068101 GCCTCTCTGACCGGCTGAGTGGCCCGTACGCACACTCGTTTCGTGGGTTGCCTTAGGCATACGAA
130 GCCTCTCTGACCGGCTGAGT-GCCCGTACG----CTCATTTCGTGGGTTGCCTTAGGCATACGAA
*
13068166 GTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATC-AGACCGGAT-CGA-GAG
190 GTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGA-ACCGAATCCGAGGAG
* * * * * *
13068228 TTGCT-GC-AGCAGGACCAGCAGCAGGATTGGCAGCACGTGGGAGGGGGATCGAGCCGATCCCTA
254 TTG-TGGCTA-CAGGACCAACAACAGGATCGGCAGCACGT-AG-GGGGGACCGAGCCGATCCCCA
** * ** ** *
13068291 ACTTGTGCATTCT-CTCTCTCCGACCAGTTGAGCACCCGCATGCTTGTTTCGTGGCTGGGCTTAG
315 ACTTGCACATTCTGC-CTCTCCGACCAGTTGAACACCCGCACCCTCATTTCCTGGCTGGGCTTA-
*
13068355 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC-GAACCGAGGGTTGTGGCAGCAGGACCGGT
378 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAG-ACCGAGGGTTATGGCAGCAGGACCGGT
* * *
13068419 -AGCTGGATCGACAGCACGTAGAGGGGTACCGGGCTGATCCCTGGCTTGCACATTATGCCTCTCC
442 AATC-GGATCGACAGCACGCAGAGGGG-ACCGGGCTGATCCCCGGCTTGCACATTATGCCTCTCC
* * *
13068483 -AGTCGGCCTCTCCGGTCGGTTGAGCCCCCGCACG-TTCGTTTCATGGGTTGACTTAGGCATACG
505 GA-CCGACCTCTCCGGTCGGTTGAGCCCCCGCACGCTT-GTTTCATGGGTTGACTTAGGCATACA
* *
13068546 GAGTTCATCCCCAG-TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAGCAGACCGAGGG
568 GAGTTCAT-CCCAGATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGG
* ** * * * * * * *
13068610 TTGT-GGCATTAGGATCGGCAGCATGCA-AGATGGAGCG-GCTGATCCCCGGCTTGAGCATTCTG
632 TT-TCGACAGCAAGATCGACAGCACGCAGAG-GGGACCGAGCCGATCCCCGGCTTGAGCATTCTA
* * *
13068672 CCTCTCCGACCGGCTGAGTGC-CGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
695 CCTCTCCGACCGGCTGAGCGCTCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGGTCAT
* * ** * * *
13068736 TCCATGTCTAAGCCCCAGCC-AGATCGAAGGTTGTGGTAGTGGGACCAGTAGCATGTAGAGGGGG
760 TCCATGTCTAAGCCCCAGCCGA-AGCGAAGGTTGTGGCAGCAGGACCAGCAGCATGCAGAAGGGG
* * * * *
13068800 ACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTTCGGGTGGCTCAGTGCCCGCACG
824 ACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTTCCGATGGCTCAGCGACCGCACG
* * * * * *
13068858 CTCGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCCCAATCTAAGATCGGATC-GTACCGA
1 CTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGA
13068922 GGGTTG
65 GGGTTG
13068928 CGGCTGATGC
Statistics
Matches: 819, Mismatches: 112, Indels: 45
0.84 0.11 0.05
Matches are distributed among these distances:
880 2 0.00
881 125 0.15
882 9 0.01
883 1 0.00
884 31 0.04
885 9 0.01
886 341 0.42
887 131 0.16
888 165 0.20
889 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (881 bp):
CTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
GGTTGTGGTAGCAAGATCGACAGCACGCAAGGGGGACCAGGCCGACCCCCGACTTACGCATTCTG
CCTCTCTGACCGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGCCTTAGGCATACGAAGTTCAT
TCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGAACCGAATCCGAGGAGTTGTGGC
TACAGGACCAACAACAGGATCGGCAGCACGTAGGGGGGACCGAGCCGATCCCCAACTTGCACATT
CTGCCTCTCCGACCAGTTGAACACCCGCACCCTCATTTCCTGGCTGGGCTTAGCATACGGAGTTC
ATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGCAGGACCGGTAATCGGATCGACAG
CACGCAGAGGGGACCGGGCTGATCCCCGGCTTGCACATTATGCCTCTCCGACCGACCTCTCCGGT
CGGTTGAGCCCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCAGATCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTTCGACAGCAAGATCGAC
AGCACGCAGAGGGGACCGAGCCGATCCCCGGCTTGAGCATTCTACCTCTCCGACCGGCTGAGCGC
TCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGGTCATTCCATGTCTAAGCCCCAGCCG
AAGCGAAGGTTGTGGCAGCAGGACCAGCAGCATGCAGAAGGGGACCGGGCCGATCCCCAGCTTGC
ACATTATGCCTCTTCCGATGGCTCAGCGACCGCACG
Found at i:13069107 original size:26 final size:26
Alignment explanation
Indices: 13069069--13069119 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13069059 TGGCTTAGGC
*
13069069 ATACGGAGTTCATT-CCATGTCTAAGG
1 ATACGGAGCTCATTCCCA-GTCTAAGG
13069095 ATACGGAGCTCATTCCCAGTCTAAG
1 ATACGGAGCTCATTCCCAGTCTAAG
13069120 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGCTCATTCCCAGTCTAAGG
Found at i:13069818 original size:26 final size:26
Alignment explanation
Indices: 13069779--13069832 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
13069769 GTTGACTTAG
13069779 GCATACGGAATTCA-TCCCTAGTCTAA
1 GCATACGGAATTCATTCCC-AGTCTAA
*
13069805 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
13069831 GC
1 GC
13069833 TCGGAGCAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:13070188 original size:18 final size:17
Alignment explanation
Indices: 13070165--13070200 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 17
13070155 ATCGTACCGA
13070165 GGGTTGTGGCTGATGCCT
1 GGGTTGTGGCTGAT-CCT
13070183 GGGTTGTGGCTGATCCT
1 GGGTTGTGGCTGATCCT
13070200 G
1 G
13070201 AGTAGCAGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.06, C:0.17, G:0.44, T:0.33
Consensus pattern (17 bp):
GGGTTGTGGCTGATCCT
Found at i:13070350 original size:26 final size:26
Alignment explanation
Indices: 13070312--13070362 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13070302 TGGCTTAGGC
*
13070312 ATACGGAGTTCATT-CCATGTCTAAGG
1 ATACGGAGCTCATTCCCA-GTCTAAGG
13070338 ATACGGAGCTCATTCCCAGTCTAAG
1 ATACGGAGCTCATTCCCAGTCTAAG
13070363 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGCTCATTCCCAGTCTAAGG
Found at i:13071046 original size:26 final size:26
Alignment explanation
Indices: 13071017--13071068 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13071007 GTTGACTTAG
*
13071017 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
13071043 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13071069 AATCAGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13071554 original size:26 final size:26
Alignment explanation
Indices: 13071518--13071569 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13071508 TTGGCTTAGT
13071518 CATACAGAGTTAATT-CCATGTCTAAG
1 CATACAGAGTTAATTCCCA-GTCTAAG
*
13071544 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTAATTCCCAGTCTAAG
13071570 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTAATTCCCAGTCTAAG
Found at i:13075642 original size:25 final size:25
Alignment explanation
Indices: 13075608--13075658 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
13075598 AAAGCCAGCA
*
13075608 TAACTCTTTGAGTTGCTTTCTCAAC
1 TAACTCTTTGAGTTGCTTCCTCAAC
13075633 TAACTCTTTGAGTTGCTTCCTCAAC
1 TAACTCTTTGAGTTGCTTCCTCAAC
13075658 T
1 T
13075659 CCTCCAACTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.25, G:0.12, T:0.43
Consensus pattern (25 bp):
TAACTCTTTGAGTTGCTTCCTCAAC
Found at i:13079112 original size:26 final size:26
Alignment explanation
Indices: 13079083--13079135 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13079073 GTTGACTTAG
*
13079083 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
13079109 GCATGCGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13079135 G
1 G
13079136 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13079121 original size:343 final size:339
Alignment explanation
Indices: 13078332--13079452 Score: 1341
Period size: 343 Copynumber: 3.3 Consensus size: 339
13078322 ACCACTCGTT
* ** * *
13078332 CGATCCCCGGCTTACGCATCCTGCCTC-TCTGGTCGGCTGAGCGCCCGCACGATCGTTTCGTGGG
1 CGATCCTCGGCTTACGCATTATGCCTCTTC-GGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGG
* *
13078396 TTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATC
65 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
** * *
13078461 GAACCGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGCACCGGGTCGATCCCCC
130 GAACCGGACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAGGGGGG-ACC--GTCGATCCCCG
* * * * * * *
13078526 GCTTGCGCATTCTGCCTCTCCGATCGGTTAAGCGCCCGCATGCCGGCTTCATGGTTTGGCTTAGG
192 GCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGG
* * *
13078591 CATAGGGAGTTTATTCCATGTCTAAGACCCAGTCAGACCGAGGGTTGTGGCAGCAAGACTGG-A-
257 CATAGGGAGTTCATTCCATGTCTAAG-CCCAGTCAGACCGAGGGTTGTGGCAGCAGGACCGGCAG
13078654 -A-GC-A---GGATCGGGC
321 CATGCAAGGGGGATCGGGC
* * * * *
13078667 TGATCCTCAGCTTACGCATTATGCCTCTCCGGTC-GCTTGAGCGCCCCCACGCTCGTTTCGTGGG
1 CGATCCTCGGCTTACGCATTATGCCTCTTCGGTCGGC-TCAGCGCCCGCACGCTCGTTTCGTGGG
* *
13078731 TTGACTTAGGCATACGGAGTTCATCCCTAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
65 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
* * * * *
13078796 GAACCAGACCGAGGGTTACGACAGCAAGATCGGCAACACGCAGGGGGGATCACGTTGATCCCTGG
130 GAACCGGACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAGGGGGGA-C-CGTCGATCCCCGG
* * * * *
13078861 CTTGGGCATTCTGCCTCTCTGGCCGGCTGAGCCCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGC
193 CTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGC
*
13078926 ATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGC
258 ATAGGGAGTTCATTCCATGTCTAAGCCC-AGTCAGACCGAGGGTTGTGGCAGCAGGACCGGCAGC
* *
13078991 ATGCAGAGGGGGACCGAGC
322 ATGCA-AGGGGGATCGGGC
* *
13079010 CGATCCTCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTTG-TTCTGTGGG
1 CGATCCTCGGCTTACGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTC-GTGGG
* ** *
13079074 TTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTTTAAGATC
65 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
* * * * * * ** *
13079139 GGACTGGGCCGAGGGTTGCGACAGCAGGATCGGTAGCACGAAGGGTAGACCGAACCGATCCCCGG
130 GAACCGGACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAGGGGGGACCG--TCGATCCCCGG
* *
13079204 CTTGCGCATTCTGCCTCTCCGGTCGGTTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGTC
193 CTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGC
* * *
13079269 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGACAGC
258 ATAGGGAGTTCATTCCATGTCTAAG-CCCAGTCAGACCGAGGGTTGTGGCAGCAGGACCGGCAGC
13079334 ATGCAAAGGGGGATCGGGC
322 ATGC-AAGGGGGATCGGGC
* * * * * * * *
13079353 CAATCC-CTGGCTTGCGCATTATGCCTTTTCGAG-CGGCTCAGTGCCCGTACGCTTGTTTTGTGT
1 CGATCCTC-GGCTTACGCATTATGCCTCTTCG-GTCGGCTCAGCGCCCGCACGCTCGTTTCGTGG
* * * *
13079416 ATGGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
64 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
13079453 ATCGGACAAA
Statistics
Matches: 673, Mismatches: 90, Indels: 38
0.84 0.11 0.05
Matches are distributed among these distances:
333 3 0.00
334 118 0.18
335 156 0.23
336 2 0.00
337 1 0.00
338 2 0.00
340 1 0.00
341 2 0.00
342 5 0.01
343 374 0.56
344 9 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (339 bp):
CGATCCTCGGCTTACGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCG
AACCGGACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAGGGGGGACCGTCGATCCCCGGCTT
GCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
GGGAGTTCATTCCATGTCTAAGCCCAGTCAGACCGAGGGTTGTGGCAGCAGGACCGGCAGCATGC
AAGGGGGATCGGGC
Found at i:13079242 original size:184 final size:185
Alignment explanation
Indices: 13078962--13079294 Score: 440
Period size: 184 Copynumber: 1.8 Consensus size: 185
13078952 CCTAGTCGGA
* * * * * *
13078962 CCGAGGGTTGTGGCAGCAGGACCGGCAGCATGCAGAGGGGGACCGAGCCGATCCTCGGCTTGCGC
1 CCGAGGGTTGCGACAGCAGGACCGGCAGCACGCAGAGGGAGACCGAACCGATCCCCGGCTTGCGC
* ** *
13079027 ATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTTG-TTCTGTGGGTTGACTTAGGCATATGG
66 ATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGCCCGTTTC-GTGGGTTGACTTAGGCATAGGG
13079091 AGTTCATCCCCA-GTCTAAGCATGCGGAGTTCATTCCCAGTTTAAGATCGGACTGGG
130 AGTTCAT-CCCATGTCTAAGCATGCGGAGTTCATTCCCAGTTTAAGATCGGACTGGG
* *
13079147 CCGAGGGTTGCGACAGCAGGATCGGTAGCACG-A-AGGGTAGACCGAACCGATCCCCGGCTTGCG
1 CCGAGGGTTGCGACAGCAGGACCGGCAGCACGCAGAGGG-AGACCGAACCGATCCCCGGCTTGCG
* * * * * *
13079210 CATTCTGCCTCTCCGGTCGGTTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGTCATAGGG
65 CATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATAGGG
*
13079275 AGTTCATTCCATGTCTAAGC
130 AGTTCATCCCATGTCTAAGC
13079295 CCCAGCCAGA
Statistics
Matches: 126, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
183 7 0.06
184 89 0.71
185 30 0.24
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.23
Consensus pattern (185 bp):
CCGAGGGTTGCGACAGCAGGACCGGCAGCACGCAGAGGGAGACCGAACCGATCCCCGGCTTGCGC
ATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGA
GTTCATCCCATGTCTAAGCATGCGGAGTTCATTCCCAGTTTAAGATCGGACTGGG
Found at i:13079619 original size:26 final size:26
Alignment explanation
Indices: 13079583--13079635 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13079573 GTTGGCTTAG
13079583 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13079609 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13079635 G
1 G
13079636 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13080614 original size:158 final size:160
Alignment explanation
Indices: 13080233--13080643 Score: 442
Period size: 159 Copynumber: 2.6 Consensus size: 160
13080223 CCACCCGTCT
* * ** *
13080233 GATCCCCGACTTACGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCACACGC-CTGTTTCGTGGGT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGT
* * * * *
13080297 TGGCTTAGGCATACGGAGTTCATT-TCATGTCCAAACCCCAGTCGGACCGAGGGTTGTGGCAGCG
65 TGGCTTAGGCATACGGAGTTCATTCCCATGTCCAAACCCCAGCCGGACCGAGGGTTGCGGCAACA
*
13080361 GGATCTGCAGCATGCAAAGAGGGACCGGGCC
130 GGATCTGCAGCACGCAAAGAGGGACCGGGCC
* * * * * * *
13080392 GATCCTCGGCTTGTGCATTAC-GCCTCTCCTGTCGGCTCAGCGCCCGCACGCTTGTTTCATGGGT
1 GATCCCCGGCTTGCGCATT-CTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * ** *
13080456 TGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACTGAGGGTTGCGGCAAC
65 TGGCTTAGGCATACGGAGTTCATTCCCATGTCCAA-ACCCCAGCCGGACCGAGGGTTGCGGCAAC
* * *
13080519 AGGATC-GACAGCACGC-AGGGGGGACCGGGTC
129 AGGATCTG-CAGCACGCAAAGAGGGACCGGGCC
* * * *
13080550 GATCCCCGGCTTGCACATTCTACCTCTCCAGCCAGCTGAGTGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
13080615 GGCTTAGGCACACGGAGTTCATT-CCATGT
66 GGCTTAGGCATACGGAGTTCATTCCCATGT
13080644 TTAAGCATAC
Statistics
Matches: 206, Mismatches: 39, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.02
158 88 0.43
159 108 0.52
160 6 0.03
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.23
Consensus pattern (160 bp):
GATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCCATGTCCAAACCCCAGCCGGACCGAGGGTTGCGGCAACAG
GATCTGCAGCACGCAAAGAGGGACCGGGCC
Found at i:13081374 original size:25 final size:26
Alignment explanation
Indices: 13081340--13081391 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
13081330 GTTGACTTAG
13081340 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13081365 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13081391 G
1 G
13081392 ATCGACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.