Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 92 of 402
Found at i:13081841 original size:155 final size:150
Alignment explanation
Indices: 13081365--13081861 Score: 453
Period size: 157 Copynumber: 3.2 Consensus size: 150
13081355 CCCAGTCTAA
* *
13081365 GCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGATCGAGGGTTGCGACAGCAGGATCGATAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-C--AACGAGGGTTGCGGCAGCAGGATCGATAG
* * * * * * * *
13081430 C-ACGAGGGTGAACCGAGTCGATCCCCGACTTGTGCATTCTGCCTCTCCAGTCGGCTGAGCGCCC
63 CAAC-AGGG-GGACC-AGGCGATCCCTGGCTTGCGCATTCTGCCTCTCTA-CCTGCTGAGCGCCC
* *
13081494 GCATGCCCGTTTCATGGGTTGGCTTAG
124 GCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * * *
13081521 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGGT
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATC-GACA-A-CGAGGGTTGCGGCAGCAGGATCGAT
* * * * *
13081585 AGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCT-T-CGTGGCTCAGCG
61 AGCA---ACAGGGGGACCAGG-CGATCCCTGGCTTGCGCATTCTGCCTCTCTACCT-GCTGAGCG
* * ** ** *
13081648 CTCGCACGCTCATTTTGTGGGTTAACTTAT
121 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
13081678 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAACGAGGGTTGCGGCAGCAGGATCGACAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACAACGAGGGTTGCGGCAGCAGGATCGATAGCA
* *
13081743 TACATGGGGGACCAGGCTGATCCCTGGCTTGCACATTCTGCCTCTCTAACCTACTGAGCGCCCGC
65 -ACA-GGGGGACCAGGC-GATCCCTGGCTTGCGCATTCTGCCTCTCT-ACCTGCTGAGCGCCCGC
13081808 ACGCTCGTTTCATGGGTTGGCTTAG
126 ACGCTCGTTTCATGGGTTGGCTTAG
13081833 GCATACGGAGTTCATTCCCAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
13081862 TTTGAGCCAC
Statistics
Matches: 267, Mismatches: 57, Indels: 35
0.74 0.16 0.10
Matches are distributed among these distances:
152 3 0.01
153 35 0.13
154 25 0.09
155 63 0.24
156 28 0.10
157 75 0.28
158 5 0.02
159 28 0.10
160 4 0.01
161 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (150 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACAACGAGGGTTGCGGCAGCAGGATCGATAGCAA
CAGGGGGACCAGGCGATCCCTGGCTTGCGCATTCTGCCTCTCTACCTGCTGAGCGCCCGCACGCT
CGTTTCATGGGTTGGCTTAG
Found at i:13082578 original size:26 final size:26
Alignment explanation
Indices: 13082541--13082619 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
13082531 GTTGACTTAG
* *
13082541 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13082567 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13082593 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13082619 G
1 G
13082620 ATCAGACCGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13083931 original size:26 final size:26
Alignment explanation
Indices: 13083892--13083945 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
13083882 GATTCAATCT
*
13083892 TAGATTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
13083918 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
13083944 TA
1 TA
13083946 AGTCAAACCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:13085032 original size:346 final size:339
Alignment explanation
Indices: 13084342--13085031 Score: 832
Period size: 347 Copynumber: 2.0 Consensus size: 339
13084332 GTCCTCCCTG
* ** *
13084342 CGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTTAGATTCAGAACGAACTTCA
1 CGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCAAGTCTGATCTTAGACTCAGAACGAACTTCA
* * * * *
13084407 TATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTTAACCCATGATACGAGCGTGTGAACGCT
66 TATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAACGCT
** * * *
13084472 CAAGCGGCCAGAGAGGTAGGATGTGCAAGTTGAGAATCGAACGGGTGGCAGGTGGGTTCAAGCAC
131 CAAGCAACCAGAGAGGCAGGATGCGCAAGTCGAGAATCGAACGGGTGGCAGGTGGGTTCAAGCAC
* *
13084537 ATCTTTATATTTCTGCCGTGCCAATGCCATTTTTATTTTTCATACAATGGTCCCCACACCTTCAT
196 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATTTTTCATACAATGGTCCCCACACCTTCAT
* * *
13084602 GTGAAGTTTCTTGGCAAGATGACCCGTTTTCTTTTTTCACGATTTTCAAAACTTTTTATGGTTCG
261 GTGAAGTTTCGTGGCAAGACGACCCGTTTTCTTTTTTCACGATTTTCAAAACTTTTTACGGTTCG
13084667 GGATTTTTAAATTTTTTTTAGA
326 GG-----T--A-TTTTTTTAGA
* * ** *
13084689 CGTGCTGTCGATCCTACTGCCGTAACCCTCAGTCCAATTC-GATCTTAGACTGGGAATGAACTTC
1 CGTGCTGTCGATCCTACTGCCGCAACCCTCAGT-CAAGTCTGATCTTAGACTCAGAACGAACTTC
* * * * *
13084753 GTATTCTTAGACTGGGAATGGACTCTGTATGCCTAAGTCAACCCACGAAATGTGCGTGCG-ACGC
65 ATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAACGC
* * * * *
13084817 TC-AGCCAACCAGAGAGGCAGGATGCGTAAGTCGGGGATCGAACTGGTGGTAGGTGGGTTCAAGC
130 TCAAG-CAACCAGAGAGGCAGGATGCGCAAGTCGAGAATCGAACGGGTGGCAGGTGGGTTCAAGC
13084881 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCC
194 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTA----TT-T---TTCATACAATGGTCCCC
* *
13084946 TA-AGCCTTCATGTGATGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTCAAAAC
251 -ACA-CCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCT-TTTTTCACGATTTTCAAAAC
13085010 TTTTTACGGTTCGGG-ATTTTTT
313 TTTTTACGGTTCGGGTATTTTTT
13085032 AAAATTGTTT
Statistics
Matches: 294, Mismatches: 36, Indels: 26
0.83 0.10 0.07
Matches are distributed among these distances:
345 2 0.01
346 90 0.31
347 107 0.36
348 4 0.01
350 2 0.01
351 1 0.00
354 18 0.06
355 37 0.13
356 33 0.11
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (339 bp):
CGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCAAGTCTGATCTTAGACTCAGAACGAACTTCA
TATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAACGCT
CAAGCAACCAGAGAGGCAGGATGCGCAAGTCGAGAATCGAACGGGTGGCAGGTGGGTTCAAGCAC
ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATTTTTCATACAATGGTCCCCACACCTTCAT
GTGAAGTTTCGTGGCAAGACGACCCGTTTTCTTTTTTCACGATTTTCAAAACTTTTTACGGTTCG
GGTATTTTTTTAGA
Found at i:13085490 original size:26 final size:26
Alignment explanation
Indices: 13085448--13085500 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13085438 GGTTCAAACT
* *
13085448 CTTAGACTGGGATTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13085474 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13085500 C
1 C
13085501 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13085827 original size:26 final size:26
Alignment explanation
Indices: 13085791--13085843 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13085781 CTGGTCCCAT
13085791 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
13085817 CTTAGGCTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13085843 C
1 C
13085844 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13086894 original size:26 final size:26
Alignment explanation
Indices: 13086858--13086910 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13086848 CCAGTTTGAT
13086858 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
13086884 CTTAGACTGGGTATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
13086910 C
1 C
13086911 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:13087082 original size:26 final size:26
Alignment explanation
Indices: 13087053--13087105 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13087043 CCGATCTGAT
*
13087053 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
13087079 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
13087105 C
1 C
13087106 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:13087157 original size:195 final size:195
Alignment explanation
Indices: 13086817--13087169 Score: 514
Period size: 195 Copynumber: 1.8 Consensus size: 195
13086807 CCCCCTTGTG
* *
13086817 TGCTGCTGATCCTGCTGTCGCAACCCTCGGTCCAGTTTGATCTTAGACTGGGAATGAACTCTGTA
1 TGCTGCTGATCCTACTGTCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTA
* * * * *
13086882 TGCTTAGACTGGGTATGAACTTCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGAGTGCTTA
66 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGTGCTCA
* *
13086947 ACCGGCCGGAGAGGCAAAATGCGTAAGCCAGGGATCGGCCCGGTCCCCTTACGTGCAGACGATCC
131 ACCGGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTTACGTGCAGACGATCC
* *
13087012 TGCTGCTGGTCCTACTG-CAGCAAGCCTCGGTCC-GATCTGATCTTAGACTGGGAATGAACTCTG
1 TGCTGCTGATCCTACTGTC-GCAACCCTCGGTCCAG-TCTGATCTTAGACTGGGAATGAACTCTG
* *
13087075 TATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGC
64 TATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGTGC
* * *
13087139 TCAATCGGTCGAAGAGGCAGAATGCGCAAGC
128 TCAACCGGCCGAAGAGGCAAAATGCGCAAGC
13087170 TGGGGACCAG
Statistics
Matches: 139, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
194 2 0.01
195 136 0.98
196 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.22
Consensus pattern (195 bp):
TGCTGCTGATCCTACTGTCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTA
TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGTGCTCA
ACCGGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTTACGTGCAGACGATCC
Found at i:13087469 original size:159 final size:156
Alignment explanation
Indices: 13087078--13087535 Score: 438
Period size: 157 Copynumber: 2.9 Consensus size: 156
13087068 AACTCTGTAT
* * *
13087078 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * *
13087143 TCGGTCGAAGAGGCAGAATGCGCAAGCTGGGGACCAGCCCGATCCCCCCTGCGTGCT-ACAGATC
66 CCGCT-GGAGAGGCAGAATGCGCAAGC-GGGGATCAGCCCGATCCCCCCTGCGTGCTGTC-GATC
* * *
13087207 CTACTATCGCAACCGTCGGTCCGATCCGA
128 CTGCTACCGCAACCGTAGGTCCGATCCGA
* * * * * *
13087236 TCTTAGAC-TGGAATGAACTCCGTATACCTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * *
13087300 CCGACCGGAGAGGCATAATACGCAAGTCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGGTC
66 CCG-CTGGAGAGGCAGAATGCGCAAG-CGGGGATCAGCCCGATCCCCC-CTGCGTGCTGTCGATC
* * * * * *
13087365 CTGCTACCTCAACCATTAGTTCCGCT-GGG
128 CTGCTACCGCAACC-GTAGGTCCGATCCGA
* * **
13087394 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG-AACTGGGCGTACGGGCATTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GAGCGTACGGGCGCTCA
* * * * * * * *
13087458 GCCAGCTGGAGAAGCAGAATGTGCAAGCCGGGATCGGTCTGATCCCCCCTACATGCTGTCGATCC
65 GCC-GCTGGAGAGGCAGAATGCGCAAGCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCC
* *
13087523 TGCTGCCGTAACC
129 TGCTACCGCAACC
13087536 TTCGATCTAG
Statistics
Matches: 241, Mismatches: 51, Indels: 17
0.78 0.17 0.06
Matches are distributed among these distances:
157 111 0.46
158 59 0.24
159 70 0.29
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGCTGGAGAGGCAGAATGCGCAAGCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCCTG
CTACCGCAACCGTAGGTCCGATCCGA
Found at i:13088659 original size:26 final size:26
Alignment explanation
Indices: 13088630--13088682 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13088620 TTGGTCCAAT
13088630 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
13088656 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
13088682 C
1 C
13088683 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:13088735 original size:526 final size:513
Alignment explanation
Indices: 13088095--13089084 Score: 1180
Period size: 526 Copynumber: 1.9 Consensus size: 513
13088085 ACCGTCGGTC
* * * *
13088095 TGGTCCGATCTTTGATTGGGAATGAACTCCGTATACTTAGACATGAAATGAACTCCATATGCCTA
1 TGGTCCAATCTTAGACTGGGAATGAACTCCATATACTTAGACATGAAATGAACTCCATATGCCTA
* * * * * * * *
13088160 AGCCAACCCACGAAACGAGCGTGCGGGCGTTCAGCTGACCGGAGAGGCAGAATGCGTAAGCCGGG
66 AGCCAACCCACGAAACAAACGTGCGGGAGCTCAACCGACCAGAGAGGCAGAATGCGTAACCCGGG
* * * *
13088225 GACCGACTCGAGCCCCCCTGCATGCTGTCGATCCTGCTGCCACAACCCTCGGT-TCG-GTCTAAT
131 AACCAACTCGAGCCCCCCTACATGCTGTCGATCCTGCTGCCACAACCCTCGGTCT-GATTC-AAT
* * * * * *
13088288 CTTAGACTGGGAATGAAC-TCTGTACGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCGCTGAG
194 CTTAGACTAGGAATGAACTTC-GTACGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTGAG
* * * *
13088352 TCGATCGGAGAGGCATAATGCCCAAGCCGGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATC
258 TCGATCGAAGAGGCAT-ATGCCCAAGCCAGGGATCAGCCCGATCCCCCTCTACATGC--T--AT-
** * * * * * *
13088417 CCACTACCGGTCCTGCTGCCACAACCCTTGGTCCGACTGGGGCTTAAACATGGAATTAACTCCGT
317 ---C-A---GTCCCACTGCCACAACCCTCGATCCGACTAGGGCTTAAACACGGAATGAACTCCCT
* *
13088482 ATGCTTGAGCCAACCCATGAAAC-GAGCGTGCGAGCACTCAACCGATCGA-AGAGGCAGAATGCA
375 ATGCCTAAGCCAACCCATGAAACGGA-CGTGCGAGCACTCAACCGAT-GAGAGAGGCAGAATGCA
* * *
13088545 CAAGCTGGGGATCGGCCTGGTCCCCCCCTGCTCGCTGTCAATCCTGCTGCTAGTCCTACTACCAT
438 CAAGCCGGGGATCGACCCGGTCCCCCCCTGCTCGCTGTCAATCCTGCTGCTAGTCCTACTACCAT
13088610 AACCCTCGATT
503 AACCCTCGATT
* * *
13088621 TGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTA
1 TGGTCCAATCTTAGACTGGGAATGAACTCCATATACTTAGACATGAAATGAACTCCATATGCCTA
* ** *
13088686 AGCCAACCCACGAAACAAACGTGTGGGAGCTCAACCGGTCAGTGAGGCAGAATGCGTAACCCGGG
66 AGCCAACCCACGAAACAAACGTGCGGGAGCTCAACCGACCAGAGAGGCAGAATGCGTAACCCGGG
* * ** * **
13088751 AACCAACTCGATCTCCCCTATGTGCTGTCGATCCTGTTGCCTTAACCCTCGGTCTGATTCAATCT
131 AACCAACTCGAGCCCCCCTACATGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGATTCAATCT
* *
13088816 TAGACTAGGAATGAACTTCGTATGCCTAGGTCAACCCACGAAACGAGCGTGCAGGCACTGAGTCG
196 TAGACTAGGAATGAACTTCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTGAGTCG
* * * * *
13088881 GTCGAAGAGGCATATGCGCAAGCCAGGGATCGGCTCGATCCCCCTCTGCATGCTATCAGTCCCAC
261 ATCGAAGAGGCATATGCCCAAGCCAGGGATCAGCCCGATCCCCCTCTACATGCTATCAGTCCCAC
* * *
13088946 TGCCACAACCCTCGATCTGGCTAGGGCTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCC
326 TGCCACAACCCTCGATCCGACTAGGGCTTAAACACGGAATGAACTCCCTATGCCTAAGCCAACCC
* ** *
13089011 ATGAAACGGACGTGCGGGTGCTCAACCGATTAGAGAGGCAGAATGCACAAGCCGGGGATCGACCC
391 ATGAAACGGACGTGCGAGCACTCAACCGATGAGAGAGGCAGAATGCACAAGCCGGGGATCGACCC
13089076 GGTCCCCCC
456 GGTCCCCCC
13089085 TGCGTGCTGC
Statistics
Matches: 392, Mismatches: 67, Indels: 23
0.81 0.14 0.05
Matches are distributed among these distances:
512 1 0.00
513 121 0.31
514 2 0.01
516 1 0.00
517 1 0.00
521 2 0.01
523 1 0.00
525 33 0.08
526 225 0.57
527 5 0.01
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.20
Consensus pattern (513 bp):
TGGTCCAATCTTAGACTGGGAATGAACTCCATATACTTAGACATGAAATGAACTCCATATGCCTA
AGCCAACCCACGAAACAAACGTGCGGGAGCTCAACCGACCAGAGAGGCAGAATGCGTAACCCGGG
AACCAACTCGAGCCCCCCTACATGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGATTCAATCT
TAGACTAGGAATGAACTTCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTGAGTCG
ATCGAAGAGGCATATGCCCAAGCCAGGGATCAGCCCGATCCCCCTCTACATGCTATCAGTCCCAC
TGCCACAACCCTCGATCCGACTAGGGCTTAAACACGGAATGAACTCCCTATGCCTAAGCCAACCC
ATGAAACGGACGTGCGAGCACTCAACCGATGAGAGAGGCAGAATGCACAAGCCGGGGATCGACCC
GGTCCCCCCCTGCTCGCTGTCAATCCTGCTGCTAGTCCTACTACCATAACCCTCGATT
Found at i:13089170 original size:26 final size:26
Alignment explanation
Indices: 13089129--13089181 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
13089119 CCGGTCCGAT
13089129 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
13089155 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
13089181 C
1 C
13089182 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13090693 original size:26 final size:27
Alignment explanation
Indices: 13090652--13090709 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
13090642 CCGGTTTGAT
13090652 CTTAGACTAGGAATGAACTCCATATG-
1 CTTAGACTAGGAATGAACTCCATATGC
* * *
13090678 CTTAGACTGGGGATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCATATGC
13090705 CTTAG
1 CTTAG
13090710 TCAACCCATG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (27 bp):
CTTAGACTAGGAATGAACTCCATATGC
Found at i:13091348 original size:159 final size:159
Alignment explanation
Indices: 13090897--13091676 Score: 421
Period size: 158 Copynumber: 4.8 Consensus size: 159
13090887 GCTTACACAT
* * * * *
13090897 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTAC-GGACGCTCAACCGATCGGA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGG-CGCTCAGCCAACCGGA
* * * * ** * * * * * * * *** **
13090961 GAGGAATATTGCGTAAATCGAGGA-CTGACTCGATTCGCC-CTGCGTACTGTTGATCTTGCTGGC
65 GAGGCAGAATGCGCAAGCCGGGGATCCG-CTCGGTCCCCCTCTGCGTGCTGTCGATCCCACTACC
* *
13091024 ACAACCCTCGGTCCGATCT--GATCTTAGACTG
129 ACAACCCTCGGTCTGA-CTGGGGT-TTAGACTG
** * * * * * *
13091055 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTTCAGGCGTTGAGCCGATCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAACCGGAG
* * *
13091120 AGGCATAATGCGCAAGCCGGGGATCCGCTCGGTCCCCCTCTGCGTGCTGTCGGTCCCACTGCCAC
66 AGGCAGAATGCGCAAGCCGGGGATCCGCTCGGTCCCCCTCTGCGTGCTGTCGATCCCACTACCAC
*
13091185 AACCCTCGGTCTGACTGGGGTTTAGACATT
131 AACCCTCGGTCTGACTGGGGTTTAGAC-TG
* * * *
13091215 GGAATGAACTCCCTATGCCTAAGCCGACCCATGAAACGGGCGTGCAGGCGCTCAGCCAACCGGAT
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAACCGGAG
* * * ** *
13091280 AGGTAGAATGTGCAAGTCGGGGAT-CGAC-CTGGTCCCCC-CTGCGTGCTGTCGATCCTGCTATC
66 AGGCAGAATGCGCAAGCCGGGGATCCG-CTC-GGTCCCCCTCTGCGTGCTGTCGATCCCACTACC
* ** * * ** * * *
13091342 ATAACCCTTAGTCCG-GTCCGATCGTGGACTG
129 ACAACCCTCGGTCTGACTGGGGT-TTAGACTG
* * * *
13091373 GGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGAGTGCTCAGCTGGCTAGAA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGC-AG-G--C-GCT--C-----
* * * * * * *
13091438 AGGTCAATCGAAGAGGCATAATGCGCAAGCCGGGGATCAG-TCTGGTCCCCCTCTGCATGCTATC
54 A-GCCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCCGCTC-GGTCCCCCTCTGCGTGCTGTC
* * * * **
13091502 AATCCTGCTATCGGTCTTACTGCCACAACCCTCTGTCCGACTGGGGCTTAGACAA
117 GATCC--C-A-----C-TA---CCACAACCCTCGGTCTGACTGGGGTTTAGACTG
* * * * *
13091557 AGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAACCGGAG
* * * *
13091622 AGGTAGAATGCGCAAGCCAGGGAT-CGACTCGATCCCCCCCTGCGTGCTGTCGATC
66 AGGCAGAATGCGCAAGCCGGGGATCCG-CTCGGTCCCCCTCTGCGTGCTGTCGATC
13091677 ATGCTGCTGG
Statistics
Matches: 473, Mismatches: 109, Indels: 67
0.73 0.17 0.10
Matches are distributed among these distances:
158 125 0.26
159 81 0.17
160 86 0.18
162 1 0.00
163 3 0.01
165 1 0.00
170 2 0.00
171 86 0.18
172 18 0.04
177 1 0.00
179 3 0.01
180 2 0.00
181 2 0.00
182 1 0.00
183 1 0.00
184 58 0.12
185 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAACCGGAG
AGGCAGAATGCGCAAGCCGGGGATCCGCTCGGTCCCCCTCTGCGTGCTGTCGATCCCACTACCAC
AACCCTCGGTCTGACTGGGGTTTAGACTG
Found at i:13092073 original size:159 final size:157
Alignment explanation
Indices: 13091744--13092124 Score: 349
Period size: 156 Copynumber: 2.4 Consensus size: 157
13091734 AACTCCGTAT
* * * * *
13091744 GCTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCACGAAATGAGGGTACGGGTGCTCAG
1 GCTTAGACAAGGAATGAACTCCGTAGGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
* * * *
13091809 TCGGCCGAAGAGGCAGAATGAGTAAGCCAGGGACCGGCCTGACCCCCCTGCATGCTGTCAATCCT
66 TCGACCGAAGAGGCAGAATGAGCAAGCCAGGGACCGGCCCGACCCCCCAGCATGCTGTCAATCCT
* * * *
13091874 GCTGCCGCAACCCTTGGTCCGGTCCGA
131 ACTGCCACAACCCTCGGTCCGCTCCGA
* * * * *
13091901 TCTTAGACTAGGAATGAACTCCGT-GGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAG
1 GCTTAGACAAGGAATGAACTCCGTAGGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
* * * ** * * *
13091965 TCGACCGGAGAGGCATAATGCGCAAGTCGGGGGATCGGCCCGATCACCCTCAGCATGCTGTCAGT
66 TCGACCGAAGAGGCAGAATGAGCAAG-CCAGGGACCGGCCCGA-C-CCCCCAGCATGCTGTCAAT
* *
13092030 -CTCACTGCCACAACCCTCGGTCCAGCT-GGG
128 CCT-ACTGCCACAACCCTCGGTCC-GCTCCGA
* * * * * * *
13092060 GCTTAGACAAGGAATTAACT-CGCCATGCTTAAGCCAACCCATGAAACG-GCCGTGCGGGCGCTC
1 GCTTAGACAAGGAATGAACTCCG-TAGGCCTAAGCCAACCCACGAAACGAG-CGTACGGGTGCTC
13092123 AG
64 AG
13092125 CCGGCCAGAG
Statistics
Matches: 178, Mismatches: 38, Indels: 13
0.78 0.17 0.06
Matches are distributed among these distances:
156 54 0.30
157 33 0.19
158 5 0.03
159 52 0.29
160 34 0.19
ACGTcount: A:0.24, C:0.30, G:0.29, T:0.17
Consensus pattern (157 bp):
GCTTAGACAAGGAATGAACTCCGTAGGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
TCGACCGAAGAGGCAGAATGAGCAAGCCAGGGACCGGCCCGACCCCCCAGCATGCTGTCAATCCT
ACTGCCACAACCCTCGGTCCGCTCCGA
Found at i:13093071 original size:159 final size:159
Alignment explanation
Indices: 13092782--13093127 Score: 444
Period size: 159 Copynumber: 2.2 Consensus size: 159
13092772 AACTCCGTAT
* * *
13092782 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * * *
13092847 CCGGCTGGAAAGGTAGAATGCGCAAGCCGGGGATTGGCCCAGTCCCCCTTTTCGTGCTACCGATC
66 CCGGCCGGAAAGGTAGAATACCCAAGCCGAGGATCGGCCCAGTCCCCCTCTGCGTGCTACCGATC
* * * *
13092912 CCGTTGCCACATCCCTCGGTCCGGCTT-GG
131 CCGCTGCCACAACCCTCAGTCCGG-TTCGA
* *
13092941 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * **
13093006 CCGGCCGGAGAGGTAGAATACCCAAGCCGAGGATCGGCCCGGTCTCCCTCTGCGTGCTGTCGATC
66 CCGGCCGGAAAGGTAGAATACCCAAGCCGAGGATCGGCCCAGTCCCCCTCTGCGTGCTACCGATC
* *
13093071 CTGCTGCCCCAACCCTCAGTCCGGTTCGA
131 CCGCTGCCACAACCCTCAGTCCGGTTCGA
*
13093100 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
13093128 TTAGACTAGG
Statistics
Matches: 160, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
158 3 0.02
159 157 0.98
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGGCCGGAAAGGTAGAATACCCAAGCCGAGGATCGGCCCAGTCCCCCTCTGCGTGCTACCGATC
CCGCTGCCACAACCCTCAGTCCGGTTCGA
Found at i:13093130 original size:26 final size:26
Alignment explanation
Indices: 13093101--13093153 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13093091 CCGGTTCGAT
13093101 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
13093127 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
13093153 C
1 C
13093154 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:13093326 original size:26 final size:26
Alignment explanation
Indices: 13093297--13093349 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13093287 CCGATTTGAT
13093297 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
13093323 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
13093349 C
1 C
13093350 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:13093850 original size:26 final size:26
Alignment explanation
Indices: 13093800--13093852 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13093790 GTTGGCTTAG
* *
13093800 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
13093826 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
13093852 G
1 G
13093853 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:13094053 original size:26 final size:25
Alignment explanation
Indices: 13094009--13094060 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
13093999 GTTGACTTGG
13094009 GCATACGAGTTCATCCCCAGTCTAA
1 GCATACGAGTTCATCCCCAGTCTAA
*
13094034 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACG-AGTTCATCCCCAGTCTAA
13094060 G
1 G
13094061 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (25 bp):
GCATACGAGTTCATCCCCAGTCTAA
Found at i:13094595 original size:26 final size:26
Alignment explanation
Indices: 13094559--13094611 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13094549 GTTGACTTAG
13094559 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13094585 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13094611 G
1 G
13094612 ATCGAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13094850 original size:551 final size:551
Alignment explanation
Indices: 13093787--13094928 Score: 1426
Period size: 551 Copynumber: 2.1 Consensus size: 551
13093777 CAAATGCTCT
13093787 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAA
* * * *
13093852 GATCAGATCGAACCGAGGGTTGCAACAACAGGACCAGCAGCAAGATTGACAACACGCAGGGGGGA
66 GACCAGAACGAACCGAGGGTCGCAACAACAGGACCAGCAGCAAGATAGACAACACGCAGGGGGGA
* * * * **
13093917 TCGGGTCGATCCCCAACTTTTGCATTCTGTCTCTCCAGCTGGCCTCTCCAGTCGGCTGAGCATCC
131 CCGGCTCGATCCCCAACTTTTGCATTCTGCCTCTCCAGCCGGCCTCTCCAGTCGGAAGAGCATCC
** * *
13093982 ACACGCTTGTTTTATGGGTTGACTTGGGCATACGAGTTCATCCCCAGTCTAAGCATACGAAGTTC
196 ACACGCTCATTTCATGGGTTGACTTAGGCATACGAGTTCATCCCCAGTCTAAGCATACGAAGTTC
* * * * *
13094047 ATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGTAGTAGGATCGACAGCACGCATGGGGG
261 ATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGG
* * * * *
13094112 ACCGGGCCGATCCCCTGCTTGCGCATTCTGCCTCTTCGGCTGACTGAGCACCCATATGCCTGTTT
326 ACCGGGCCGATCCCCAGCTTGAGCATTCTACCTCTCCGGCTGACTGAGCACCCATATGCCCGTTT
*
13094177 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGTCAAAAAGAGGGTTGTG
391 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAAAAAGAGGGTTGTG
* * * * * * *
13094242 GCAACGGGACCGACAGAATGTGAAGAGGGATCGGGTCGATCCTCAGCTTGTGCATTCTGCCTCTT
456 GCAACGAGACCGACAAAACGTGAAGAGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTC
** *
13094307 C-GACTGGCTGAGCGCCCGCACGCTCGTTTCG
521 CAG-CCAGCTGAGCGCCCGCACGCTCGTTTCA
* * *
13094338 TGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAG-TGATTCCCAATCTAA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAA
* * ** * * * *
13094402 GACCAGAACGGACCGAGGGTCGCGACAGTAGGACCAGCAGCAGGATCAG-TAGCATGCAGGGGGG
66 GACCAGAACGAACCGAGGGTCGCAACAACAGGACCAGCAGCAAGAT-AGACAACACGCAGGGGGG
** * *
13094466 ACCAGGCT-GATCCTTAACTTTTGCATTCTGCCTCTCC-GACCGGCCTGTCC-GGCTGGAAGAGC
130 ACC-GGCTCGATCCCCAACTTTTGCATTCTGCCTCTCCAG-CCGGCCTCTCCAGTC-GGAAGAGC
** * *
13094528 A-CCTGTATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACG
192 ATCC-ACACGCTCATTTCATGGGTTGACTTAGGCATAC-GAGTTCATCCCCAGTCTAAGCATACG
* * * * * **
13094592 GAGTTCATTCCCAGTGTAAGATCGAACTAGACCGAGGGTTATGGCAGCAGGGTCGGTAGCACGCA
255 AAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCA
* **
13094657 GGGGGGACCGGGCCGATCCCCAGCTTGATCATTCTACCTCTCCGG-TCGGTTGAGCA-CCAGTAT
320 GGGGGGACCGGGCCGATCCCCAGCTTGAGCATTCTACCTCTCCGGCT-GACTGAGCACCCA-TAT
* * * * **
13094720 GCCCGTTTTGTGGGTTGGCTTAGGCATAGTGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
383 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAAAAAGA
* *
13094785 GGGTTGTGGTAGCGAGACCGACAAAACGT-AGAGAGGGATCGGGCCGATCCCC-GACTTGCGCAT
448 GGGTTGTGGCAACGAGACCGACAAAACGTGA-AGAGGGATCGGGCCGATCCCCAG-CTTGCGCAT
* *
13094848 TCTGCCTCTCCAGCCAGTTGAGCGCCCGCACGCTCGTTTTA
511 TCTGCCTCTCCAGCCAGCTGAGCGCCCGCACGCTCGTTTCA
13094889 TGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
1 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
13094929 ATCAGACCAG
Statistics
Matches: 504, Mismatches: 75, Indels: 24
0.84 0.12 0.04
Matches are distributed among these distances:
549 5 0.01
550 139 0.28
551 356 0.71
552 4 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (551 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAA
GACCAGAACGAACCGAGGGTCGCAACAACAGGACCAGCAGCAAGATAGACAACACGCAGGGGGGA
CCGGCTCGATCCCCAACTTTTGCATTCTGCCTCTCCAGCCGGCCTCTCCAGTCGGAAGAGCATCC
ACACGCTCATTTCATGGGTTGACTTAGGCATACGAGTTCATCCCCAGTCTAAGCATACGAAGTTC
ATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGG
ACCGGGCCGATCCCCAGCTTGAGCATTCTACCTCTCCGGCTGACTGAGCACCCATATGCCCGTTT
CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAAAAAGAGGGTTGTG
GCAACGAGACCGACAAAACGTGAAGAGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTC
CAGCCAGCTGAGCGCCCGCACGCTCGTTTCA
Found at i:13094955 original size:159 final size:158
Alignment explanation
Indices: 13094585--13094958 Score: 391
Period size: 159 Copynumber: 2.4 Consensus size: 158
13094575 CCCAGTCTAA
* * * ** **
13094585 GCATACGGAGTTCATTCCCAGTGTAAGATC-GAACTAGACCGAGGGTTATGGCAGCAGGGTCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTATGGTAGCAGGACCGAC
** * * * * *
13094649 AGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGATCATTCTACCTCTCCGGTCGGTTGAGCAC
65 AAAACGCAGGAGGGACCGGGCCGATCCCCAGCTTGAGCATTCTACCTCTCCAGCCAGTTGAGCAC
* * *
13094714 CAGTATGCCCGTTTTGTGGGTTGGCTTAG
130 CAGCACGCCCGTTTTATGGGTTGGCTTAG
** *
13094743 GCATA-GTGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAGC-GAGACC
1 GCATACG-GAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTATGGTAGCAG-GACC
* * * *
13094804 GACAAAACGTAGAGAGGGATCGGGCCGATCCCC-GACTTGCGCATTCTGCCTCTCCAGCCAGTTG
62 GACAAAACGCAG-GAGGGACCGGGCCGATCCCCAG-CTTGAGCATTCTACCTCTCCAGCCAGTTG
* * *
13094868 AGCGCCCGCACGCTCGTTTTATGGGTTGGCTTAG
125 AGCACCAGCACGCCCGTTTTATGGGTTGGCTTAG
*
13094902 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGCAG
13094959 AACCAGTAGT
Statistics
Matches: 174, Mismatches: 31, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
157 5 0.03
158 52 0.30
159 111 0.64
160 6 0.03
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGCAGGACCGACA
AAACGCAGGAGGGACCGGGCCGATCCCCAGCTTGAGCATTCTACCTCTCCAGCCAGTTGAGCACC
AGCACGCCCGTTTTATGGGTTGGCTTAG
Found at i:13095121 original size:26 final size:26
Alignment explanation
Indices: 13095085--13095137 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13095075 GTTGACTTAG
*
13095085 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13095111 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13095137 G
1 G
13095138 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13095836 original size:26 final size:26
Alignment explanation
Indices: 13095806--13095858 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13095796 GTTGACTTAG
13095806 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13095832 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13095858 G
1 G
13095859 ATTGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13096338 original size:26 final size:26
Alignment explanation
Indices: 13096308--13096360 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13096298 GTTGGCTTAG
*
13096308 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13096334 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13096360 G
1 G
13096361 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13096705 original size:26 final size:26
Alignment explanation
Indices: 13096675--13096725 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13096665 GTTGACTTAG
*
13096675 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13096701 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
13096726 TGATCTGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13096900 original size:26 final size:26
Alignment explanation
Indices: 13096863--13096915 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13096853 GTTGGCTTAG
13096863 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
13096889 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13096915 G
1 G
13096916 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13098175 original size:26 final size:26
Alignment explanation
Indices: 13098139--13098191 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13098129 GTTGACTTAG
13098139 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13098165 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13098191 G
1 G
13098192 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13098470 original size:554 final size:554
Alignment explanation
Indices: 13097397--13098498 Score: 1532
Period size: 554 Copynumber: 2.0 Consensus size: 554
13097387 CGAGTCGTCT
13097397 TGCCACGAAACTTCACATGAAGGCATAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
1 TGCCACGAAACTTCACATGAAGGCATAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
13097462 TTTAGCAAGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCGATTCGATCCCCAACTTG
66 ATTAGCAAGACAGAAATATGAAGATGTGCTTGAACCCACCTACCACCGATTCGATCCCCAACTTG
* * *
13097527 CGCATCCTGCATCTTTGGTCGGCTGAGCATCCACAGCTCGTTTCATGGGTTGACTTAGGCATACG
131 CACATCCTGCATCTCTGGTCGGCTGAGCATCCACAGCTCATTTCATGGGTTGACTTAGGCATACG
* * * *
13097592 GAGTTCATCCCTAGTCTAAGCATACAGAGGTCATTTCCAGTCTAAGATTGAATCAGACCGAGGGT
196 GAGTTCATCCCCAGTCTAAGCATACAGAGGTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGT
* * ** * ** *
13097657 TACGGTAGCAGGATCGGCAACACACAGGAGGGACCGGACCGATCCTCGACTTGTGCATTCTGCCT
261 TACGGCAACAGGATCAACAACACACAGGAGGGACCGGACCAATCCTCGACTTACGCATTCTACCT
* * * * * *
13097722 CTTCGACCAGCTGAGCGCCCGCACTCCGGTTTCGTGGGTTGGCTTATGCATAGGGAGTTCATTCC
326 CTCCGACCAGCTGAGCGCCCGCACGCCCGTTTCATAGGTTGGCTTAGGCATAGGGAGTTCATTCC
* * *
13097787 ATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCGGGACTGGCAGGACGCAGATGGTGATCG
391 ATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGATGGCGATCG
* *
13097852 AGTCGATCCCCGGCTTGCGCATTATGCCTTTTCGGCTGGCTCAGCGCTCGCACGCTCGTTCGTGG
456 AGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGCGCTCGCACGCTCGTTCGTGG
* *
13097917 GTTAACTTAGGCATACTGTGTTCATTCCATGTCC
521 GTTAACTTAGGCATACGGAGTTCATTCCATGTCC
13097951 TGCCACGAAACTTCACATGAAGGCATAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
1 TGCCACGAAACTTCACATGAAGGCATAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * **
13098016 ATTGGCACGACAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCG-TTCGATCCCCGGCTT
66 ATTAGCAAGACAGAAATATGAAGATGTGCTTGAACCCACCTACCA-CCGATTCGATCCCCAACTT
* ** *
13098080 GCACATCCTGCCTCTCTGGTCGGCTGAGCATTTACACGCTCATTTCGT-GGTTGACTTAGGCATA
130 GCACATCCTGCATCTCTGGTCGGCTGAGCATCCACA-GCTCATTTCATGGGTTGACTTAGGCATA
* * * *
13098144 CGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
194 CGGAGTTCATCCCCAGTCTAAGCATACAGAGGTCATTCCCAGTCTAAGATCGAACCAGACCGAGG
** * * * * * *
13098209 GTTGTGGCAATAGGATCAACAGCACGCAGG-GGGACTGGGCCAATCC-CTGGCTTACGCATTCTA
259 GTTACGGCAACAGGATCAACAACACACAGGAGGGACCGGACCAATCCTC-GACTTACGCATTCTA
** * *
13098272 CCTCTCCGGTCGGTTGAGCGCCCGCACGCCCGTTTCATAGGTTGGCTTAGGCATAGGGAGTTCAT
323 CCTCTCCGACCAGCTGAGCGCCCGCACGCCCGTTTCATAGGTTGGCTTAGGCATAGGGAGTTCAT
* * *
13098337 TCCATGTCTAAGCCCTAGTCGGA-CTGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGATGGCG
388 TCCATGTCTAAGCCCCAGCCAGATC-GAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGATGGCG
* * * * * *
13098401 TTCG-GGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGCTGGCTCAGTGGTCGCACGCTCATT
452 ATCGAGTC-GATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGCGCTCGCACGCTC-GT
*
13098465 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
515 TCGTGGGTTAACTTAGGCATACGGAGTTCATTCC
13098499 CAGTCTAAGA
Statistics
Matches: 478, Mismatches: 64, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
552 4 0.01
553 186 0.39
554 276 0.58
555 12 0.03
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (554 bp):
TGCCACGAAACTTCACATGAAGGCATAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTAGCAAGACAGAAATATGAAGATGTGCTTGAACCCACCTACCACCGATTCGATCCCCAACTTG
CACATCCTGCATCTCTGGTCGGCTGAGCATCCACAGCTCATTTCATGGGTTGACTTAGGCATACG
GAGTTCATCCCCAGTCTAAGCATACAGAGGTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGT
TACGGCAACAGGATCAACAACACACAGGAGGGACCGGACCAATCCTCGACTTACGCATTCTACCT
CTCCGACCAGCTGAGCGCCCGCACGCCCGTTTCATAGGTTGGCTTAGGCATAGGGAGTTCATTCC
ATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGATGGCGATCG
AGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGCGCTCGCACGCTCGTTCGTGG
GTTAACTTAGGCATACGGAGTTCATTCCATGTCC
Found at i:13098693 original size:158 final size:158
Alignment explanation
Indices: 13098199--13098694 Score: 448
Period size: 159 Copynumber: 3.1 Consensus size: 158
13098189 AAGATCGGAC
* * * * ** *
13098199 CGGACCGAGGGTTGTGGCAATAGGATCAACAGCACGCAG-GGG-GA-CTGGGCCAATCCCTGGCT
1 CGGACCGAGGGTTGTGGCAGTAAGACCGACAGCACGCAGAGGGCGATC-GGGCTGATCCCCGGCT
* * * *
13098261 TACGCATTCTACCTCTCCGGTCGGTTGAGCGCCCGCACGCCCGTTTCATAGGTTGGCTTAGGCAT
65 TACGCATTATACCTCTCC-GTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
*
13098326 AGGGAGTTCATTCCATGTCTAAGCCCTAGT
129 AGGGAGTTCATTCCATGTCTAAGCCCCAGT
* *** * * *
13098356 CGGACTGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGATGGCGTTCGGGCTGATCCCCGGCTT
1 CGGACCGAGGGTTGTGGCAGTAAGACCGACAGCACGCAGAGGGCGATCGGGCTGATCCCCGGCTT
** * * * * ** * * *
13098421 GTGCATTATGCCTCTCCGGCTGGCTCAGTGGTCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
66 ACGCATTATACCTCTCCGTC-GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
* ** *
13098486 CGGAGTTCATTCCCA-GTCTAAG-ATCAGAC
130 GGGAGTTCATT-CCATGTCTAAGCCCCAG-T
** ** * * * * *
13098515 CGGACCGAGGGTTGCAGCAGTAAGATTGATAGCACGTA-AGGGGGATCGGG-TCGGTCCTCGGCT
1 CGGACCGAGGGTTGTGGCAGTAAGACCGACAGCACGCAGAGGGCGATCGGGCT-GATCCCCGGCT
* * * *
13098578 TACACATTTTACCTCTCCGATCGGCTGAACGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCAT
65 TACGCATTATACCTCTCCG-TCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
*
13098643 AGGGAGTTCACTCCATGTCTAAGCCCCAGT
129 AGGGAGTTCATTCCATGTCTAAGCCCCAGT
13098673 CGGACCGAGGGTTGTGGCAGTA
1 CGGACCGAGGGTTGTGGCAGTA
13098695 GGATCAGTAG
Statistics
Matches: 259, Mismatches: 70, Indels: 19
0.74 0.20 0.05
Matches are distributed among these distances:
157 36 0.14
158 109 0.42
159 110 0.42
160 4 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
CGGACCGAGGGTTGTGGCAGTAAGACCGACAGCACGCAGAGGGCGATCGGGCTGATCCCCGGCTT
ACGCATTATACCTCTCCGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGT
Found at i:13098706 original size:158 final size:154
Alignment explanation
Indices: 13098199--13098706 Score: 448
Period size: 158 Copynumber: 3.2 Consensus size: 154
13098189 AAGATCGGAC
* * * *
13098199 CGGACCGAGGGTTGTGGCAATAGGATCAACAGCACGCAGGGGGA-CTGGGCCAATCCCTGGCTTA
1 CGGACCGAGGGTTGTGGCAGTAGGATCAGCAGCACGAAGGGGGATC-GGG-CGATCCC-GGCTTA
* * * *
13098263 CGCATTCTACCTCTCCGGTCGGTTGAGCGCCCGCACGCCCGTTTCATAGGTTGGCTTAGGCATAG
63 CGCATTATACCTCTCC-GTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAG
*
13098328 GGAGTTCATTCCATGTCTAAGCCCTAGT
127 GGAGTTCATTCCATGTCTAAGCCCCAGT
* ** * * * * *
13098356 CGGACTGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGATGGCGTTCGGGCTGATCCCCGGCTT
1 CGGACCGAGGGTTGTGGCAGTAGGATCAGCAGCACG-A-AGGGGGATCGGGC-GAT-CCCGGCTT
** * * * * ** * * *
13098421 GTGCATTATGCCTCTCCGGCTGGCTCAGTGGTCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
62 ACGCATTATACCTCTCCGTC-GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
* ** *
13098486 CGGAGTTCATTCCCA-GTCTAAG-ATCAGAC
126 GGGAGTTCATT-CCATGTCTAAGCCCCAG-T
** * * * *
13098515 CGGACCGAGGGTTGCAGCAGTAAGAT-TGATAGCACGTAAGGGGGATCGGGTCGGTCCTCGGCTT
1 CGGACCGAGGGTTGTGGCAGTAGGATCAG-CAGCACG-AAGGGGGATCGGG-CGATCC-CGGCTT
* * * *
13098579 ACACATTTTACCTCTCCGATCGGCTGAACGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATA
62 ACGCATTATACCTCTCCG-TCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
*
13098644 GGGAGTTCACTCCATGTCTAAGCCCCAGT
126 GGGAGTTCATTCCATGTCTAAGCCCCAGT
*
13098673 CGGACCGAGGGTTGTGGCAGTAGGATCAGTAGCA
1 CGGACCGAGGGTTGTGGCAGTAGGATCAGCAGCA
13098707 GAATTAGTAG
Statistics
Matches: 266, Mismatches: 70, Indels: 29
0.73 0.19 0.08
Matches are distributed among these distances:
157 34 0.13
158 115 0.43
159 110 0.41
160 7 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (154 bp):
CGGACCGAGGGTTGTGGCAGTAGGATCAGCAGCACGAAGGGGGATCGGGCGATCCCGGCTTACGC
ATTATACCTCTCCGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAG
TTCATTCCATGTCTAAGCCCCAGT
Found at i:13099201 original size:26 final size:26
Alignment explanation
Indices: 13099165--13099216 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13099155 TTGGCTTAGC
13099165 CATACAGAGTTCATT-CCATGTCTAAG
1 CATACAGAGTTCATTCCCA-GTCTAAG
13099191 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
13099217 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:13099579 original size:26 final size:26
Alignment explanation
Indices: 13099543--13099595 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13099533 GTTGACTTAG
13099543 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13099569 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13099595 G
1 G
13099596 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13100116 original size:26 final size:26
Alignment explanation
Indices: 13100086--13100138 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13100076 GTTGACTTAG
13100086 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
13100112 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
13100138 G
1 G
13100139 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:13100461 original size:26 final size:26
Alignment explanation
Indices: 13100431--13100480 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
13100421 GGCTTAGGCA
13100431 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGGAGTTCATTCCCA-GTCTAAGCG
13100457 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
13100481 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:13101268 original size:26 final size:26
Alignment explanation
Indices: 13101239--13101291 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13101229 GTTGACTTAG
*
13101239 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
*
13101265 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
13101291 G
1 G
13101292 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:13101790 original size:26 final size:26
Alignment explanation
Indices: 13101740--13101792 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13101730 GTTGGCTTAG
*
13101740 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
13101766 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
13101792 G
1 G
13101793 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:13103021 original size:26 final size:25
Alignment explanation
Indices: 13102991--13103042 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
13102981 GTTGGCTTAG
13102991 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
13103017 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
13103042 G
1 G
13103043 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:13104295 original size:159 final size:156
Alignment explanation
Indices: 13103933--13104317 Score: 386
Period size: 159 Copynumber: 2.4 Consensus size: 156
13103923 CCTGATCTAA
* *
13103933 GCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACCGGACCGAGGGTT-TCGACAGCAAGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-GACC-GA-CGAGGGTTGT-GGCAGCAGGATCGA
* * * * * *
13103996 CAGCACGCAGAGGGGACCGAGCCGATCCTCGGCTTGCGCATTTTACCTCTCCGGCCGGCTGAGCG
62 CAGCACGCAGAGGGGACCGAGCCGATCCCCAGCTTGCACATTATACCTCTCCGACCGGCTCAGCG
* *
13104061 CTCGCACGCCCGTTTCATGGGTTGGCTTAG
127 CTCGCACGCCCATTTCATGGGTTGACTTAG
* * **
13104091 GCATAGGGAGGTCATT-CCATGTCTAAGCCCTAG-CCGAAGCGAGGGTTGTGGCAGCAGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCG-A-CGAGGGTTGTGGCAGCAGGATC-G
* * * * * *
13104153 CCAGCATGCAGAAGGGGACTGGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGATCGGCTCAG
61 ACAGCACGCAG-AGGGGACCGAGCCGATCCCCAGCTTGCACATTATACCTCTCCGACCGGCTCAG
* * *
13104218 CGAC-CGTACGCTCATTTCGTGGGTTGACTTAG
125 CG-CTCGCACGCCCATTTCATGGGTTGACTTAG
* *
13104250 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGTATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAC-GAGGGTTGTGGCAGCAGGATCGACA
13104315 GCA
64 GCA
13104318 TGTAAGGGGG
Statistics
Matches: 183, Mismatches: 31, Indels: 25
0.77 0.13 0.10
Matches are distributed among these distances:
157 5 0.03
158 53 0.29
159 118 0.64
160 7 0.04
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACGAGGGTTGTGGCAGCAGGATCGACAGC
ACGCAGAGGGGACCGAGCCGATCCCCAGCTTGCACATTATACCTCTCCGACCGGCTCAGCGCTCG
CACGCCCATTTCATGGGTTGACTTAG
Found at i:13104448 original size:26 final size:26
Alignment explanation
Indices: 13104412--13104464 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13104402 GTTGCCTTAG
*
13104412 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
13104438 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
13104464 G
1 G
13104465 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:13104824 original size:26 final size:26
Alignment explanation
Indices: 13104794--13104853 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
13104784 GTTGACTTAG
13104794 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13104820 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13104846 G-AT-CGGAG
1 GCATACGGAG
13104854 CAGACCGAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
24 5 0.15
25 2 0.06
26 26 0.79
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13104842 original size:887 final size:881
Alignment explanation
Indices: 13102947--13105184 Score: 2360
Period size: 887 Copynumber: 2.5 Consensus size: 881
13102937 TCTGGCTTTT
* * * ** * * *
13102947 CGGTTGGTTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
1 CGGTCGGTTGAGCCCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCA-G
* *
13103012 -TCTAAGCATACGGAGTTCATT-CCAGTCTAAGATTGGACCAGACCGAGGTTTGTGATAGCAGGA
65 ATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGG---GT--T-G--TGA
* ** * * *
13103075 CCAGCAGTAAGATCGATAGCTTGC-AGGGGGACCGAGCCAATCCCCGGCTTGCGCATTCTACCTC
122 -CAGC---AAGATCGACAGCACGCAAGAGGGACCGAGCCGATCCCCGGCTTGAGCATTCTACCTC
* * * * * * * *
13103139 TCCGACTGGCTAAGCCCCCGCATGCTCATTTCATGGGTTGGCTTTGGCATACGGAGTTCATTCCA
183 TCCGACCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGGTCATTCCA
* * * * * * * * * **
13103204 TGTGTAAGCGCCAGTCAGATCGAGGGTTGTCATAGCAAGAGGGGCAATGGGATCGGCAGTACACA
248 TGTCTAAGCCCCAGCCAGAGCGAAGGTTG---TGGC---A---GC-A--GGACCAGCAGCATGCA
* ** * ** **
13103269 GAAGGGGGCCAAGCTGATCTTC-GACTTGTGCATTATGCCTCTT-CGATCGGCCTCTCTGGTCAG
301 GAAGGGGACCGGGCCGATCCCCAG-CTTGCACATTATGCCTCTTCCGAT-GG-----C---TCAG
* * * *
13103332 CCGAGCGCCCACACTCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCTAGTCTAAGA
356 -CGA----CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGA
* ** * * *
13103397 TCGGACTGGACCGAGGGTTGTGGTAGCAAGATCGACAGCATGCAGGGGGGACTGGGCTGACCCCC
416 TCAGACCAGACCGAGGGTTGTGGTAGCAAGATCGACAGCATGCAAGGGGGACTAGGCCGACCCCC
* * ** * * *
13103462 GGCTTATGCATTCTGCCTCTCTGGCTGGCTGAGTGCCCGTACGCTCATTTCTTGGGTTGGCTTAG
481 GACTTACGCATTCTGCCTCTCTAACCGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGCCTTAG
* * * *
13103527 GCATATGGAGTTCATTCCATGTCTAGGCATACACAGTTCATTCCCAGTCTAAGATCGAACCGAAT
546 GCATACGAAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGAACCGAAT
* * *
13103592 CGAGGGTTGTGGCTACAGGACCAACAATAGGATCGGTAGCACGTAGGGGGGGACCGAGCCGATCC
611 CGAGAGTTGTGGCTACAGGACCAACAACAGGATCGGCAGCACGTAGGGGGGGACCGAGCCGATCC
* * * * * *
13103657 CCAGCTTGCACATTCTGCCTCTCCTATCGGTTGAACACCCGCACCCTCATTTCCTGGGTTGGCTT
676 CCAACTTGCACATTCTGCCTCTCCGACCAGTTGAACACCCGCACCCTCATTTCCTGGCTGGGCTT
*
13103722 AGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTATGGCAGCAGGACCGG
741 AGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGCAGGACCGG
*
13103787 TAATCGGATCGACAGCACGCAGAGGGGACCGGGCTGATCCCCGGCTTGGACATTATGCCTCTCCG
806 TAATCGGATCGACAGCACGCAGAGGGGACCGGGCTGATCCCCGGCTTGCACATTATGCCTCTCCG
13103852 ACCGACCTCTC
871 ACCGACCTCTC
* * * * *
13103863 CGGTCGGTTGAGCGCCTGTACGCTTGTTTCATGGGTTGACTTAGGCATATAGAGTTCATCCCTGA
1 CGGTCGGTTGAGCCCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCAGA
*
13103928 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTT-TCGACAGCAAGA
66 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGT-GACAGCAAGA
* * * *
13103992 TCGACAGCACGC-AGAGGGGACCGAGCCGATCCTCGGCTTGCGCATTTTACCTCTCCGGCCGGCT
130 TCGACAGCACGCAAGA-GGGACCGAGCCGATCCCCGGCTTGAGCATTCTACCTCTCCGACCGGCT
* *
13104056 GAGCGCTCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGGTCATTCCATGTCTAAGCCC
194 GAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGGTCATTCCATGTCTAAGCCC
* * * *
13104121 TAGCC-GAAGCGAGGGTTGTGGCAGCAGGA-CTGCCAGCATGCAGAAGGGGACTGGGCCGATCCC
259 CAGCCAG-AGCGAAGGTTGTGGCAGCAGGACCAG-CAGCATGCAGAAGGGGACCGGGCCGATCCC
*
13104184 CAGCTTGCACATTATGCCTC-TCCGATCGGCTCAGCGACCGTACGCTCATTTCGTGGGTTGACTT
322 CAGCTTGCACATTATGCCTCTTCCGAT-GGCTCAGCGACCGCACGCTCATTTCGTGGGTTGACTT
* *
13104248 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGC-AGTATCG
386 AGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAAG-ATCG
* * * * *
13104312 ACAGCATGTAAGGGGGA-TCAGGCCGATCCTCGACTTACGTATTTTGCCTCTCTAACCGGCTGAG
450 ACAGCATGCAAGGGGGACT-AGGCCGACCCCCGACTTACGCATTCTGCCTCTCTAACCGGCTGAG
*
13104376 TGCCCGTACGCACACTCGTTTCGTGGGTTGCCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
514 TGCCCGTACG----CTCATTTCGTGGGTTGCCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
* *
13104441 TACAAAGTTCATTCCCAGTCTAAGATC-AGACCGGATCGAGAGTTGCT-GC-AGCAGGACCAGCA
575 TACAAAGTTCATTCCCAGTCTAAGATCGA-ACCGAATCGAGAGTTG-TGGCTA-CAGGACCAACA
* * * * * **
13104503 GCAGGATTGGCAGCACGTGGGAGGGGGATCGAGCCGATCCCTAACTTGTGCATTCT-CTCTCTCC
637 ACAGGATCGGCAGCACGTAGG-GGGGGACCGAGCCGATCCCCAACTTGCACATTCTGC-CTCTCC
* ** ** *
13104567 GACCAGTTGAGCACCCGCATGCTTGTTTCGTGGCTGGGCTTAGGCATACGGAGTTCATTCCATGT
700 GACCAGTTGAACACCCGCACCCTCATTTCCTGGCTGGGCTTAGGCATACGGAGTTCATTCCATGT
* * *
13104632 CTAAGCCCCAGCC-GAACCGAGGGTTGTGGCAGCAGGACCGGT-AGCTGGATCGACAGCACGTAG
765 CTAAGCCCCAGCCAG-ACCGAGGGTTATGGCAGCAGGACCGGTAATC-GGATCGACAGCACGCAG
* * *
13104695 AGGGGTACCGGGCTGATCCCTGGCTTGCACATTATGCCTCTCC-AGTCGGCCTCTC
828 AGGGG-ACCGGGCTGATCCCCGGCTTGCACATTATGCCTCTCCGA-CCGACCTCTC
*
13104750 CGGTCGGTTGAGCCCCCGCACG-TTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
1 CGGTCGGTTGAGCCCCCGCACGCTT-GTTTCATGGGTTGACTTAGGCATACAGAGTTCAT-CCCA
* * * ** *
13104814 G-TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAGCAGACCGAGGGTTGTGGCATTAGG
64 GATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGTGACAGCAAG
* * * * * *
13104878 ATCGGCAGCATGCAAGATGGAGCGAGCTGATCCCCGGCTTGAGCATTCTGCCTCTCCGACCGGCT
129 ATCGACAGCACGCAAGAGGGACCGAGCCGATCCCCGGCTTGAGCATTCTACCTCTCCGACCGGCT
* * *
13104943 GAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
194 GAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGGTCATTCCATGTCTAAGCCC
* * ** * * * *
13105008 CAGCCAGATCGAAGGTTGTGGTAGTGGGACCAGTAGCATGTAGAGGGGGACCGGGCCGATCCCCG
259 CAGCCAGAGCGAAGGTTGTGGCAGCAGGACCAGCAGCATGCAGAAGGGGACCGGGCCGATCCCCA
* * * * * * *
13105073 GCTTGCACATTATGCCTCTTCGGGTGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTATG
324 GCTTGCACATTATGCCTCTTCCGATGGCTCAGCGACCGCACGCTCATTTCGTGGGTTGACTTAGG
* * *
13105138 CATACGAAGTTCATTCCCAATCTAAGATCGGATC-GTACCGAGGGTTG
389 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTG
13105185 CGGCTGATGC
Statistics
Matches: 1125, Mismatches: 166, Indels: 91
0.81 0.12 0.07
Matches are distributed among these distances:
880 3 0.00
881 137 0.12
884 2 0.00
885 120 0.11
886 157 0.14
887 399 0.35
888 15 0.01
889 1 0.00
893 3 0.00
894 46 0.04
895 1 0.00
896 1 0.00
897 2 0.00
900 1 0.00
903 3 0.00
905 16 0.01
906 110 0.10
908 4 0.00
909 2 0.00
912 1 0.00
914 2 0.00
915 1 0.00
916 73 0.06
917 25 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (881 bp):
CGGTCGGTTGAGCCCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCAGA
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGTGACAGCAAGAT
CGACAGCACGCAAGAGGGACCGAGCCGATCCCCGGCTTGAGCATTCTACCTCTCCGACCGGCTGA
GCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGGTCATTCCATGTCTAAGCCCCA
GCCAGAGCGAAGGTTGTGGCAGCAGGACCAGCAGCATGCAGAAGGGGACCGGGCCGATCCCCAGC
TTGCACATTATGCCTCTTCCGATGGCTCAGCGACCGCACGCTCATTTCGTGGGTTGACTTAGGCA
TACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAAGATCGACAGCA
TGCAAGGGGGACTAGGCCGACCCCCGACTTACGCATTCTGCCTCTCTAACCGGCTGAGTGCCCGT
ACGCTCATTTCGTGGGTTGCCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAAAGTTCA
TTCCCAGTCTAAGATCGAACCGAATCGAGAGTTGTGGCTACAGGACCAACAACAGGATCGGCAGC
ACGTAGGGGGGGACCGAGCCGATCCCCAACTTGCACATTCTGCCTCTCCGACCAGTTGAACACCC
GCACCCTCATTTCCTGGCTGGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
CCGAGGGTTATGGCAGCAGGACCGGTAATCGGATCGACAGCACGCAGAGGGGACCGGGCTGATCC
CCGGCTTGCACATTATGCCTCTCCGACCGACCTCTC
Found at i:13105202 original size:18 final size:17
Alignment explanation
Indices: 13105179--13105214 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
13105169 ATCGTACCGA
13105179 GGGTTGCGGCTGATGCCT
1 GGGTTGCGGCTGAT-CCT
*
13105197 GGGTTGTGGCTGATCCT
1 GGGTTGCGGCTGATCCT
13105214 G
1 G
13105215 AGTAGCAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.06, C:0.19, G:0.44, T:0.31
Consensus pattern (17 bp):
GGGTTGCGGCTGATCCT
Found at i:13105364 original size:26 final size:26
Alignment explanation
Indices: 13105326--13105376 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13105316 TGGCTTAGGC
*
13105326 ATACGGAGTTCATT-CCATGTCTAAGG
1 ATACGGAGCTCATTCCCA-GTCTAAGG
13105352 ATACGGAGCTCATTCCCAGTCTAAG
1 ATACGGAGCTCATTCCCAGTCTAAG
13105377 ATTTTTAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGCTCATTCCCAGTCTAAGG
Found at i:13106074 original size:26 final size:26
Alignment explanation
Indices: 13106035--13106088 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
13106025 GTTGACTTAG
13106035 GCATACGGAATTCA-TCCCTAGTCTAA
1 GCATACGGAATTCATTCCC-AGTCTAA
*
13106061 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
13106087 GC
1 GC
13106089 TCGGAGCAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:13107333 original size:26 final size:26
Alignment explanation
Indices: 13107296--13107347 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13107286 GTTGACTTAG
*
13107296 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
13107322 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13107348 AATCAGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13107812 original size:26 final size:26
Alignment explanation
Indices: 13107776--13107827 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13107766 TTGGCTTAGT
*
13107776 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACAGAGTTCATTCCCA-GTCTAAG
13107802 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
13107828 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:13108166 original size:26 final size:26
Alignment explanation
Indices: 13108137--13108189 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13108127 GTTGACTTAG
13108137 GCATAC-GAGTTCATCCCCCAGTCTAA
1 GCATACGGAGTTCAT-CCCCAGTCTAA
*
13108163 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13108189 G
1 G
13108190 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 17 0.68
27 8 0.32
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13108358 original size:26 final size:26
Alignment explanation
Indices: 13108328--13108380 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13108318 GTTGGCTTAG
13108328 GCATACGGAGCTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
*
13108354 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
13108380 G
1 G
13108381 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:13114983 original size:26 final size:26
Alignment explanation
Indices: 13114947--13114999 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13114937 GTTGACTTAG
13114947 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
13114973 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
13114999 G
1 G
13115000 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:13115370 original size:343 final size:335
Alignment explanation
Indices: 13114539--13115658 Score: 1255
Period size: 343 Copynumber: 3.3 Consensus size: 335
13114529 ACCACACGTT
* ** * * * * * *
13114539 CGATCCCCGGCTTGCGCATCCTGCCTC-TCTAGTAGGCTGAGCGCCCGCACGATCGTTTCGTGGG
1 CGATCCCTGGCTTGCGCATTATGCCTCTTC-GGTCGGCTCAGCGCCCACACGCTTGTTT-GTGGG
* *
13114603 TTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATC
64 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
* *
13114668 GAACCGGACCGAGGGTTATGGCAGCAGGATCGACAGCACGCAGGGGGGCACCAGGCCGATCCCCT
129 GAACCGGACCGAGGGTTACGACAGCAGGATCG-CAGCACGCAGGGGGG-A-CAGGCCGAT-CCCT
* * * * *
13114733 -GCTTACGCATTCTGCCTCTCCGGTCGGTTGAGCACCCGCATGCCTGCTTCGTGGTTTGGCTTAG
190 GGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * *
13114797 GCATAGGGAGTTTATTCCATGTCTAAGACCCAGCCGGACCGAGGGTTGTGGTAGCAAGACTGGA-
255 GCATAGGGAGTTTATTCCATGTCTAAG-CCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGAG
*
13114861 -A-GC-A--GGATCGGG
319 CATGCAAGGGGACCGGG
* * * * *
13114873 CTGATCCCTGGCTTGCGCATTATGCCTCTCCGATC-GCTTGAGCGCCCCCACGCTCGTTTCGTGG
1 C-GATCCCTGGCTTGCGCATTATGCCTCTTCGGTCGGC-TCAGCGCCCACACGCTTGTTT-GTGG
*
13114937 GTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
63 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
* * * *
13115002 CGAACCAGACCGAGGGTTACGACAGCAAGATCAGCAACACGCAGGGGGGATCAGGTCGATCCCTG
128 CGAACCGGACCGAGGGTTACGACAGCAGGATC-GCAGCACGCAGGGGGGA-CAGGCCGATCCCTG
* * * * *
13115067 GCTTGGGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTAGCTTAGG
191 GCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGG
* *
13115132 CATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAACAGGACCGGTAG
256 CATAGGGAGTTTATTCCATGTCTAAGCCC-AGCCGGACCGAGGGTTGTGGCAGCAGGACCGG-AG
13115197 CATGCAGAGGGGGACCGGG
319 CATGCA-A-GGGGACCGGG
* *
13115216 TCGAT-CCTCGGCTTGCACATTATGCCTCTTCGGTCGGCTCAGTGCCCACACGCTTGTTCTGTGG
1 -CGATCCCT-GGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCACACGCTTGTT-TGTGG
*
13115280 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC-T-TGCGAAATTCATTCCCAGTCTAAG
63 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATG-G-AGTTCATTCCCAGTCTAAG
* * * * * * ** *
13115343 ATTGGACTGGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGAAGGGCAGACCGAGCCGAT-CC
126 ATCGAACCGGACCGAGGGTTACGACAGCAGGATC-GCAGCACGCAGGGGGGACAG-GCCGATCCC
**
13115407 TCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTT
189 T-GGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTT
* * *
13115472 AGTCATAGGGAGTTTATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGT-GCAGCGGGACCGG
253 AGGCATAGGGAGTTTATTCCATGTCTAAG-CCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGG
*
13115536 ACAGCATACAAAGGGGACCGGG
317 --AGCATGC-AAGGGGACCGGG
* * * * * *
13115558 CCAATCCCTGGCTTGTGCATTATGCCTTTTCGGGT-GGCTCAACGCCCGCACGCTTGTTT-TGTG
1 -CGATCCCTGGCTTGCGCATTATGCCTCTTC-GGTCGGCTCAGCGCCCACACGCTTGTTTGTGGG
* *
13115621 TATGGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
64 T-T-GACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
13115659 ATCGGACCAA
Statistics
Matches: 673, Mismatches: 83, Indels: 52
0.83 0.10 0.06
Matches are distributed among these distances:
333 7 0.01
334 120 0.18
335 153 0.23
336 2 0.00
337 1 0.00
338 2 0.00
340 5 0.01
341 4 0.01
342 105 0.16
343 266 0.40
344 8 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (335 bp):
CGATCCCTGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCACACGCTTGTTTGTGGGTT
GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGA
ACCGGACCGAGGGTTACGACAGCAGGATCGCAGCACGCAGGGGGGACAGGCCGATCCCTGGCTTG
CGCATTCTGCCTCTCCGGTCGGTTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
GGAGTTTATTCCATGTCTAAGCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGAGCATGCAA
GGGGACCGGG
Found at i:13116819 original size:158 final size:160
Alignment explanation
Indices: 13116439--13116848 Score: 451
Period size: 159 Copynumber: 2.6 Consensus size: 160
13116429 CACCCGTCTG
* * * *
13116439 ATCCCCGACTTACACATTCTGCCTCTCTGGCCGGCTGAGCGCCCACACGC-CTGTTTTGTGGGTT
1 ATCCCCGGCTTACACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTT
* * * *
13116503 GACTTAGGCATACGGAGTTCATT-TCATGTCCAAGCCCCAGCCAGACCGAGGGTTGTGGCAACGA
65 GACTTAGGCACACGGAGTTCATTCCCATGTCCAAGCACCAGCCAGACCGAGGGTTGCGGCAACGA
*
13116567 GATCTGCAGCATGCAAAGAGGGACCAGGCCA
130 GATCTGCAGCACGCAAAGAGGGACCAGGCCA
*** * * *
13116598 ATCCCCGGCTTGTGCATTAC-GCCTCTCCGGTCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTT
1 ATCCCCGGCTTACACATT-CTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * *
13116662 GACTTAGGCACACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGCGGCAAC-
65 GACTTAGGCACACGGAGTTCATTCCCATGTCCAAGCACCAG-CCAGACCGAGGGTTGCGGCAACG
* * * * *
13116724 AGGATC-GACAGCACGC-AGGGGGGACCGGGTCG
129 A-GATCTG-CAGCACGCAAAGAGGGACCAGGCCA
* * * *
13116756 GTCCCCGGCTTACACATTCTACCTCTCCGGCCAGCTGAGCGCCCGCACGCTCATTTCGTGGGTTG
1 ATCCCCGGCTTACACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
*
13116821 GCTTAGGCACACGGAGTTCATT-CCATGT
66 ACTTAGGCACACGGAGTTCATTCCCATGT
13116849 TTAAGTATAC
Statistics
Matches: 208, Mismatches: 35, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
157 4 0.02
158 92 0.44
159 108 0.52
160 4 0.02
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.22
Consensus pattern (160 bp):
ATCCCCGGCTTACACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
ACTTAGGCACACGGAGTTCATTCCCATGTCCAAGCACCAGCCAGACCGAGGGTTGCGGCAACGAG
ATCTGCAGCACGCAAAGAGGGACCAGGCCA
Found at i:13117258 original size:26 final size:26
Alignment explanation
Indices: 13117209--13117258 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
13117199 GTTGACTTAG
*
13117209 GCATACAGAGTTCATCCCTGGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
*
13117235 GCATACGGAGTTCATTCCC-AGTCT
1 GCATACAGAGTTCA-TCCCTAGTCT
13117259 CAGATCAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:13117581 original size:26 final size:26
Alignment explanation
Indices: 13117552--13117604 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13117542 GTTGACTTAG
*
13117552 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13117578 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13117604 G
1 G
13117605 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13117817 original size:343 final size:342
Alignment explanation
Indices: 13117194--13117851 Score: 899
Period size: 343 Copynumber: 1.9 Consensus size: 342
13117184 ATGCTTATTT
** *
13117194 CGTGGGTTGACTTAGGCATACAGAGTTCATCCCTGGTCTAAGCATACGGAGTTCATTCCCAGTCT
1 CGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCT
* * * * *
13117259 CAGATCAAATCGGATCGATGGTTACGGCAGCAGGATCGACAGCACGCGGAGGGGACCGGACCGAT
66 AAGATCAAACCAGATCGAGGGTTACGACAGCAGGATCGACAGCAC-CGGAGGGGACCGGACCGAT
** * * * *
13117324 CTTCGGCTAGCACATTCTGCTTCTCCAGCCGACTGAGCGCCCGCACGCCAGTTTCATGGGTTGGT
130 CCCCGACTAGCACATTATGCCTCTCCAGCCGACTGAGCGCCCGCACGCCAGTTTCATGGGTTGGC
* * *
13117389 TTAGGCACAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGACC
195 TTAGGCACAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTGTGGCAGCGGGACC
** * *
13117454 AACAGCATGCAGCGGGGGACCGGGTCGAT-CCTCGACGTGCGCATTATGCCTCTTCAGCAAGCTC
260 AACAGCACACAGAGGGGGACCGGGCCGATCCCT-GACGTGCGCATTATGCCTCTTCAGCAAGCTC
13117518 AGCTCCTGCATGCTTGCTC
324 AGCTCCTGCATGCTTGCTC
* *
13117537 CGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCT
1 CGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCT
* * * *
13117602 AAGATCGAACCAGATCGAGGGTTGCGACAGCAGGATCGATAGCA-CGGAGGGCGAACC-GAGTCG
66 AAGATCAAACCAGATCGAGGGTTACGACAGCAGGATCGACAGCACCGGAGGG-G-ACCGGA-CCG
* * * * * *
13117665 ATCCCCGACTTGCGCATTATGCCTCTCCAGTCGGCTGAGCGCCCGCATGCCCGTTTCATGGGTTG
128 ATCCCCGACTAGCACATTATGCCTCTCCAGCCGACTGAGCGCCCGCACGCCAGTTTCATGGGTTG
*
13117730 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTGTGGCAGCGGGA
193 GCTTAGGCACAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTGTGGCAGCGGGA
** * * *
13117795 CCGGCAGCACACAGATGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTC
258 CCAACAGCACACAGAGGGGGACCGGGCCGATCCCTGACGTGCGCATTATGCCTCTTC
13117852 GGCCGGCTCA
Statistics
Matches: 272, Mismatches: 39, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
341 7 0.03
342 3 0.01
343 259 0.95
344 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (342 bp):
CGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCT
AAGATCAAACCAGATCGAGGGTTACGACAGCAGGATCGACAGCACCGGAGGGGACCGGACCGATC
CCCGACTAGCACATTATGCCTCTCCAGCCGACTGAGCGCCCGCACGCCAGTTTCATGGGTTGGCT
TAGGCACAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTGTGGCAGCGGGACCA
ACAGCACACAGAGGGGGACCGGGCCGATCCCTGACGTGCGCATTATGCCTCTTCAGCAAGCTCAG
CTCCTGCATGCTTGCTC
Found at i:13117886 original size:159 final size:158
Alignment explanation
Indices: 13117663--13118080 Score: 428
Period size: 159 Copynumber: 2.6 Consensus size: 158
13117653 CGAACCGAGT
* * * * * *
13117663 CGATCCCCGACTTGCGCATTATGCCTCTCCAGTCGGCTGAGCGCCCGCATGCCCGTTTCATGGGT
1 CGATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
13117728 TGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCAGACCGAGAGTTGTGGCAGC
66 TGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGACCCCAGCCA-ACCGAGAGTTGCGGCAGC
* * *
13117791 GGGACCGGCAGCACACA-GATGGGGACCGGGC
129 AGGACCGACAGCACACATG--GGGGACCAGGC
* * * * * * *
13117822 CGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCTCGTACGCTCATTTTGTGGGT
1 CGATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
** * * ** * * * *
13117887 TAACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGTAGCAG
66 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCCCAGCCAACCGAGAGTTGCGGCAGCAG
* *
13117952 GATCGACAGCATACATGGGGGACCAGGC
131 GACCGACAGCACACATGGGGGACCAGGC
* * * * **
13117980 TGATCCCTGGCTTGCACATTCTGCCTCTCCAACCTACTGAGCGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * *
13118045 TGGCTTAGGCATACAGAGTTCATTTCTAGTCTAAGA
66 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
13118081 TTTTGAGCCA
Statistics
Matches: 207, Mismatches: 49, Indels: 7
0.79 0.19 0.03
Matches are distributed among these distances:
158 92 0.44
159 107 0.52
160 8 0.04
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.24
Consensus pattern (158 bp):
CGATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCCCAGCCAACCGAGAGTTGCGGCAGCAG
GACCGACAGCACACATGGGGGACCAGGC
Found at i:13118043 original size:158 final size:156
Alignment explanation
Indices: 13117578--13118081 Score: 481
Period size: 158 Copynumber: 3.2 Consensus size: 156
13117568 CCCAGTCTAA
* * * * *
13117578 GCATACGAAGTTCATTCCTAGTCTAAGATCGAACCAGATCGAGGGTTGCGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
** * * * * *
13117643 GCACGGAGGGCGAACCGAGTCGATCCCCGACTTGCGCATTATGCCTCTCCAGTCGGCTGAGCGCC
66 GCACACAGGG-GGACC-AGGCGATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGGCTGAGCGCC
* * *
13117708 CGCATGCCCGTTTCATGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * * * *
13117736 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGAGTTGTGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * *
13117800 AGCACACAGATGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCG
65 AGCACACAG--GGGGACCAGG-CGATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGGCTGAGCG
* * * * ** *
13117865 CTCGTACGCTCATTTTGTGGGTTAACTTAT
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
13117895 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GAACCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAG-ACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * **
13117959 AGCATACATGGGGGACCAGGCTGATCCCTGGCTTGCACATTCTGCCTCTCCAACCTACTGAGCGC
65 AGCACACA-GGGGGACCAGGC-GATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGGCTGAGCGC
13118024 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
13118053 GCATACAGAGTTCATTTCTAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
13118082 TTTGAGCCAC
Statistics
Matches: 269, Mismatches: 69, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.01
158 147 0.55
159 113 0.42
160 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACACAGGGGGACCAGGCGATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13118796 original size:26 final size:26
Alignment explanation
Indices: 13118759--13118837 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
13118749 GTTGACTTAG
* *
13118759 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13118785 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13118811 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13118837 G
1 G
13118838 ATCAGACCGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13119275 original size:159 final size:155
Alignment explanation
Indices: 13118811--13119478 Score: 533
Period size: 159 Copynumber: 4.2 Consensus size: 155
13118801 CCCAGTCTAA
* * *
13118811 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGTAGGATCGGCA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC-TCA
* * * *
13118876 GCATGTAGGGGGGACCGAGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGACCGCTGAGTGCCCG
65 GCACGTAGGGGGGACCGGGCCGATCCCGACTTGCGCATTCTGCCTCTCCGACGGCTGAGTGCCCG
* *
13118941 CATG-TCTGTTTCGTGGGTTGGCTGAG
130 CATGCTC-GTTTCTTGGGTTGGCTTAG
* ** * * * *
13118967 GCATACGGAGTTCATT-CCATGTCTAAGCCCAG-CAGGACCGAGGGTTGTGGTAGCGGGATCGT-
1 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC-TC
* * * * * *
13119029 AGCACGCAGAGGGGACCGGGCCGATCCCCGTCTTGTGCATTAC-GCCTCTTCGACTGGCTCAGTG
64 AGCACGTAGGGGGGACCGGGCCGAT-CCCGACTTGCGCATT-CTGCCTCTCCGAC-GGCTGAGTG
* * *
13119093 CCCGCACGCTCGTTT-TGTTGGTTGACTTAG
126 CCCGCATGCTCGTTTCT-TGGGTTGGCTTAG
* * * *
13119123 GCATACAAAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAACAGGATCTACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCT-CA
* * * * *
13119188 CCACGTAAGGGGGGATCGGGCTGGTCTCCGACTTGCGCATTCTGCCTCTCCGACGGGCTGAGCGC
65 GCACGT-AGGGGGGACCGGGCCGATC-CCGACTTGCGCATTCTGCCTCTCCGAC-GGCTGAGTGC
*
13119253 CAGCATGCTCGTTTCTTGGGTTGGCTTAG
127 CCGCATGCTCGTTTCTTGGGTTGGCTTAG
* * * * * *
13119282 GCACACGGAGTTCATTCCCAGTCAAAGAT-TGAACTGGACCGAGGGTTACGGTAGTAGGACCAGC
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGG-T----T-G-CGG--CAGC
* * * * *
13119346 AGTAGGAT-TGACAGCACGCAGGGGGGACCGGACTGATCCCCGGCTTGCGCATTCTGCCTCTCCA
56 ---AGGATCT--CAGCACGTAGGGGGGACCGGGCCGAT-CCCGACTTGCGCATTCTGCCTCTCCG
** * * *
13119410 ACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
115 A-CGGCTGAGTGCCCGCATGCTCGTTTCTTGGGTTGGCTTAG
* * *
13119452 GCATACGGAGTTCATCCCCAGCCTAAG
1 GCATACGAAGTTCATTCCCAGTCTAAG
13119479 CATATGGAGT
Statistics
Matches: 406, Mismatches: 76, Indels: 46
0.77 0.14 0.09
Matches are distributed among these distances:
154 21 0.05
155 49 0.12
156 78 0.19
157 27 0.07
158 8 0.02
159 103 0.25
160 2 0.00
164 1 0.00
165 1 0.00
166 2 0.00
168 3 0.01
170 97 0.24
171 14 0.03
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (155 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCTCAG
CACGTAGGGGGGACCGGGCCGATCCCGACTTGCGCATTCTGCCTCTCCGACGGCTGAGTGCCCGC
ATGCTCGTTTCTTGGGTTGGCTTAG
Found at i:13119488 original size:26 final size:26
Alignment explanation
Indices: 13119452--13119504 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13119442 GTTGACTTAG
13119452 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* * *
13119478 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
13119504 G
1 G
13119505 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:13119838 original size:159 final size:155
Alignment explanation
Indices: 13119486--13120145 Score: 508
Period size: 158 Copynumber: 4.1 Consensus size: 155
13119476 AAGCATATGG
*
13119486 AGTTCATTCCCAGTCTAAGATCAGATCGGACGAGGGTTGCGACAGC--ATCGGTAGCACGCAGGG
1 AGTTCATTCCCAGTCTAAGATCAGATCGGACGAGGGTTGCGGCAGCGGATCGGTAGCACGCAGGG
* * * * * *
13119549 GGGATCGGGCCGATCCTCAGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGTACGC-CT
66 GGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTC-
** *
13119613 ATTTCACGGGTTGGTTGAGGCATACGA
130 ATTTCGTGGGTTGCTT-AGGCATACGA
* ** * *
13119640 AGTTCATT-CCATATCTAAGCCCTAG-CCGGACCGAGGGTTGTGGCAGCGGGATCGGTAGCACGC
1 AGTTCATTCCCA-GTCTAAGATC-AGATCGGA-CGAGGGTTGCGGCAGC-GGATCGGTAGCACGC
* * * *
13119703 AGAGGGGGACCGGGCCGATCCTCGGCTTGTGCATTATGCCTTTCCGGCCGGCTCAGCGCCCGCAC
62 AG-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCAC
* *
13119768 GCTCGTTTCGTGGGTTGACTTAGGCATACGT
126 GCTCATTTCGTGGGTTG-CTTAGGCATACGA
* * * * *** *
13119799 AGTTTATTCCCAGTCTAAGATCGGATCGGACTGAAGGTTGCGGCAACAGGATCTACAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCAGATCGGAC-GAGGGTTGCGGCAGC-GGATCGGTAGCACGCAG
** * * * * ** **
13119864 GGGGGACTAGGCCGGTCCTTGACTTGCGTATTCTGCCTCTCCGGTGGGCTGAGCGCCTACACGCT
64 GGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCT
* *
13119929 CATTTCGTGGGTTGGCTTAGGCACACGG
129 CATTTCGTGGGTT-GCTTAGGCATACGA
* * * *
13119957 AGTTCATTCCCAGTCAAAGATCTA-A-CTGGACCGAGGGTTACGGCACCAGGACCAACAGTAGGA
1 AGTTCATTCCCAGTCTAAGATC-AGATC-GGA-CGAGGGTTGCGGCAGC-GG------A-TCGG-
* *** *
13120020 TTGACAGCACGCAGGGGGGACCGGACCGATCC-CTGGCTTGCGCATTCTGCCTCTCCAATCGACT
54 -T---AGCACGCAGGGGGGACCGGGCCGATCCTC-GGCTTGCGCATTCTGCCTCTCCGGCCGGCT
* * *
13120084 GAGCACCCGCACGCTCATTTCGTGGGTTGACTTTGGCATACGG
114 GAGCGCCCGCACGCTCATTTCGTGGGTTG-CTTAGGCATACGA
* *
13120127 AGTTCATCCCCAGCCTAAG
1 AGTTCATTCCCAGTCTAAG
13120146 CATACGGAGT
Statistics
Matches: 394, Mismatches: 82, Indels: 44
0.76 0.16 0.08
Matches are distributed among these distances:
153 3 0.01
154 19 0.05
155 16 0.04
157 1 0.00
158 130 0.33
159 118 0.30
160 6 0.02
164 1 0.00
165 1 0.00
169 1 0.00
170 98 0.25
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (155 bp):
AGTTCATTCCCAGTCTAAGATCAGATCGGACGAGGGTTGCGGCAGCGGATCGGTAGCACGCAGGG
GGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCA
TTTCGTGGGTTGCTTAGGCATACGA
Found at i:13120060 original size:667 final size:671
Alignment explanation
Indices: 13118785--13121217 Score: 2842
Period size: 667 Copynumber: 3.6 Consensus size: 671
13118775 CCCAGTCTAA
* * *
13118785 GCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAC
1 GCATACGGAGTTCATCCCCAGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * * * * * *
13118850 CGAGGGTTACGGCAGTAGGATCGGCAGCATGTAGGGGGGACCGAGCCGATCC-CGGCTTGCGCAT
66 CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTGCGCAT
* * * * *
13118914 TCTGCCTCTCCGAC-CGCTGAGTGCCCGCATGTCTGTTTCGTGGGTTGGCTGAGGCATACGGAGT
131 TCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCCTGTTTCGTGGGTTGGTTGAGGCATACGGAGT
* * *
13118978 TCATTCCATGTCTAAG-CCCAGCAGGACCGAGGGTTGTGGTAGCGGGATCG-TAGCACGCAG-AG
196 TCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAAG
* * * *
13119040 GGGACCGGGCCGATCCCCGTCTTGTGCATTACGCCTCTTCGACTGGCTCAGTGCCCGCACGCTCG
261 GGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGCTCG
** * ** *
13119105 TTTTGTTGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTT
326 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTT
* * * * *
13119170 GCGGCAACAGGATCTACACCACGTAAGGGGGGA-TCGGGCTGGT-CTCCGACTTGCGCATTCTGC
391 GCGGCAACAGGATCTACAGCACGT-AGGGGGGACT-AGGCCGGTCCT-TGACTTGCGTATTCTGC
** * *
13119233 CTCTCCGACGGGCTGAGCGCC-AGCATGCTCGTTTCTTGGGTTGGCTTAGGCACACGGAGTTCAT
453 CTCTCCGGTGGGCTGAGCGCCTAGCA-GCTCATTTCATGGGTTGGCTTAGGCACACGGAGTTCAT
*
13119297 TCCCAGTCAAAGAT-TGAACTGGACCGAGGGTTACGGTAGTAGGACCAGCAGTAGGATTGACAGC
517 TCCCAGTCAAAGATCT-AACTGGACCGAGGGTTACGGTAGCAGGACCAGCAGTAGGATTGACAGC
* * * *
13119361 ACGCAGGGGGGACCGGACTGATCCCCGGCTTGCGCATTCTGCCTCTCCAACCGGCTGAGCACCCG
581 ACGCAGGGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCCAATCGACTGAGCACCCG
13119426 CACGCTCGTTTCGTGGGTTGACTTAG
646 CACGCTCGTTTCGTGGGTTGACTTAG
* * *
13119452 GCATACGGAGTTCATCCCCAGCCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-
1 GCATACGGAGTTCATCCCCAGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* ** *
13119516 CGAGGGTTGC-G-A-CAGCATCGGTAGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTACGCAT
66 CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTGCGCAT
* * ** *
13119578 TCTGCCTCTCCGACTGGCTGAGCGCCCGTACGCCTATTTCACGGGTTGGTTGAGGCATACGAAGT
131 TCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCCTGTTTCGTGGGTTGGTTGAGGCATACGGAGT
* * ** *
13119643 TCATTCCATATCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCGGGATCGGTAGCACGCAGAGG
196 TCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAAG
* *
13119708 GGGACCGGGCCGATCCTCGGCTTGTGCATTATGCCT-TTCCGGCCGGCTCAGCGCCCGCACGCTC
261 GGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTT-CGACCGGCTCAGCGCCCGCACGCTC
* * * * * *
13119772 GTTTCGTGGGTTGACTTAGGCATACGTAGTTTATTCCCAGTCTAAGATCGGATCGGACTGAAGGT
325 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGT
13119837 TGCGGCAACAGGATCTACAGCACGTAGGGGGGACTAGGCCGGTCCTTGACTTGCGTATTCTGCCT
390 TGCGGCAACAGGATCTACAGCACGTAGGGGGGACTAGGCCGGTCCTTGACTTGCGTATTCTGCCT
*
13119902 CTCCGGTGGGCTGAGCGCCTA-CACGCTCATTTCGTGGGTTGGCTTAGGCACACGGAGTTCATTC
455 CTCCGGTGGGCTGAGCGCCTAGCA-GCTCATTTCATGGGTTGGCTTAGGCACACGGAGTTCATTC
* * *
13119966 CCAGTCAAAGATCTAACTGGACCGAGGGTTACGGCACCAGGACCAACAGTAGGATTGACAGCACG
519 CCAGTCAAAGATCTAACTGGACCGAGGGTTACGGTAGCAGGACCAGCAGTAGGATTGACAGCACG
13120031 CAGGGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCCAATCGACTGAGCACCCGCAC
584 CAGGGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCCAATCGACTGAGCACCCGCAC
* *
13120096 GCTCATTTCGTGGGTTGACTTTG
649 GCTCGTTTCGTGGGTTGACTTAG
* * *
13120119 GCATACGGAGTTCATCCCCAGCCTAAGCATACGGAGTTCATTCTCAGTCTAAAATCAGACCGGAC
1 GCATACGGAGTTCATCCCCAGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * *
13120184 CGAGGGTTACGGCGGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTGTGCAT
66 CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTGCGCAT
* * * * * * * *
13120249 TCTACCTCTTCGGCCGGCTGAGCGTCCGCACATCC-GTTTCGTGGGTTGGCTT-AGCCAT-GGGA
131 TCTGCCTCTCCGACTGGCTGAGCGCCCGCAC-GCCTGTTTCGTGGGTTGG-TTGAGGCATACGGA
13120311 GTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGAAT-GACAGCACGCAG
194 GTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGG-ATCGACAGCACGCAG
*** * * * * * *
13120375 AAGGGGACCGATTCGATTCCCGACTTGTGCATTATGCCTCTCCGATCGGCTCAGTGCCCGCATGC
258 AAGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGC
* * * * *
13120440 TTGTTTCATGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCGAAGATCAGACCAGACCGAGG
323 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGG
* *** * * * * *
13120505 GGTGCGGCAGTTGGATCGATAGCACGTAAGGGGGACCAGGCCGGTCCCT-AGCTTGCGTATTCTG
388 GTTGCGGCAACAGGATCTACAGCACGTAGGGGGGACTAGGCCGGTCCTTGA-CTTGCGTATTCTG
* * * * * * *
13120569 CCTCTCATGCTCATTTTGTGGGTTG-GCTTAGGCATATGGAGTTCATTCCAT--G-T--C-TAAG
452 -C-CTC-T-C-C----GGTGGGCTGAGC----GCCTA-GCAGCTCATTTCATGGGTTGGCTTAGG
* * ** * * * *
13120627 CATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCAGATCGAAGGTTGCGGTAGCAGGACCAGCA
503 CACACGGAGTTCATTCCCAGTCAAAGATCTAACT-GGACCGAGGGTTACGGTAGCAGGACCAGCA
* * * * * *
13120691 GCAGGATCGGCAGCACGCAGGGAGGG-CC-GAGTCGATCCCTGACTTGTGCATTCTGCCTCTCCA
567 GTAGGATTGACAGCACGCAGGG-GGGACCGGA-CCGATCCCTGGCTTGCGCATTCTGCCTCTCCA
* *
13120754 ATCGACTG-GGAGCCCGCACGCTCGTTTCGTGGGTTGAGTTAG
630 ATCGACTGAGCA-CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * **
13120796 GTATACGGAGTTCATCCCCAATCTAAGCATATGAAGTTCATTCTTAGTCTAAGATCAGACCGGAC
1 GCATACGGAGTTCATCCCCAGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * *
13120861 CGGGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGATCGGGCCGATCCCCAGCTTGCGCAT
66 CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTGCGCAT
* * * * *
13120926 TCTGCCTCTCC-AGTCGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGTTTAGGCATAGGGAG
131 TCTGCCTCTCCGACT-GGCTGAGCGCCCGCACGCCTGTTTCGTGGGTTGGTTGAGGCATACGGAG
* * * * *
13120990 TTCATTCCATGTCCAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACGGCACACAGAA
195 TTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAA
* * * * * *
13121055 GGGGACCGGGTCGATCCCCAGCTTGCGCATTATACCTCTTCGATCGGCTCAGCACCCGCACGCTC
260 GGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGCTC
* * * * *
13121120 GTTTTATGGGTTGACTTATGCATACGGAGTTCATTCCCAATCTAAGATCGAACCAAACTGAGGGT
325 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGT
* ** * *
13121185 TGTGTTAGCAGGATCAACAGCACGTAGGGGGGA
390 TGCGGCAACAGGATCTACAGCACGTAGGGGGGA
13121218 TCGGGCCGAT
Statistics
Matches: 1512, Mismatches: 211, Indels: 75
0.84 0.12 0.04
Matches are distributed among these distances:
663 30 0.02
664 25 0.02
665 56 0.04
666 40 0.03
667 359 0.24
668 152 0.10
669 2 0.00
670 217 0.14
671 90 0.06
672 7 0.00
673 1 0.00
674 1 0.00
675 1 0.00
676 9 0.01
677 298 0.20
678 202 0.13
679 7 0.00
680 1 0.00
681 1 0.00
682 4 0.00
683 8 0.01
684 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (671 bp):
GCATACGGAGTTCATCCCCAGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAC
CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTGCGCAT
TCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCCTGTTTCGTGGGTTGGTTGAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAAG
GGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGCTCG
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTT
GCGGCAACAGGATCTACAGCACGTAGGGGGGACTAGGCCGGTCCTTGACTTGCGTATTCTGCCTC
TCCGGTGGGCTGAGCGCCTAGCAGCTCATTTCATGGGTTGGCTTAGGCACACGGAGTTCATTCCC
AGTCAAAGATCTAACTGGACCGAGGGTTACGGTAGCAGGACCAGCAGTAGGATTGACAGCACGCA
GGGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCCAATCGACTGAGCACCCGCACGC
TCGTTTCGTGGGTTGACTTAG
Found at i:13120636 original size:26 final size:26
Alignment explanation
Indices: 13120600--13120652 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13120590 GTTGGCTTAG
*
13120600 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13120626 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13120652 G
1 G
13120653 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13121123 original size:159 final size:158
Alignment explanation
Indices: 13120856--13121156 Score: 379
Period size: 159 Copynumber: 1.9 Consensus size: 158
13120846 AAGATCAGAC
* * * * *
13120856 CGGACCGGGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGATCGGGCCGATCCCCAGCTTG
1 CGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACACAGAGGGGACCGGGCCGATCCCCAGCTTG
* * * * * * ** *
13120921 CGCATTCTGCCTCTCCAGTCGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGTTTAGGCATAG
66 CGCATTATACCTCTCCAGTCGGCTCAGCACCCGCACGCCCGTTTCATGGGTTGACTTAGGCATAC
13120986 GGAGTTCATTCCATGTCCAAGCCCCAGT
131 GGAGTTCATTCCATGTCCAAGCCCCAGT
* * * *
13121014 CGGACCGAGGGTTGTGGCAGCGGGACCGACGGCACACAGAAGGGGACCGGGTCGATCCCCAGCTT
1 CGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACACAG-AGGGGACCGGGCCGATCCCCAGCTT
* * * *
13121079 GCGCATTATACCTCTTC-GATCGGCTCAGCACCCGCACGCTCGTTTTATGGGTTGACTTATGCAT
65 GCGCATTATACCTCTCCAG-TCGGCTCAGCACCCGCACGCCCGTTTCATGGGTTGACTTAGGCAT
13121143 ACGGAGTTCATTCC
129 ACGGAGTTCATTCC
13121157 CAATCTAAGA
Statistics
Matches: 119, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
158 33 0.28
159 86 0.72
ACGTcount: A:0.17, C:0.30, G:0.32, T:0.21
Consensus pattern (158 bp):
CGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACACAGAGGGGACCGGGCCGATCCCCAGCTTG
CGCATTATACCTCTCCAGTCGGCTCAGCACCCGCACGCCCGTTTCATGGGTTGACTTAGGCATAC
GGAGTTCATTCCATGTCCAAGCCCCAGT
Found at i:13122525 original size:158 final size:156
Alignment explanation
Indices: 13122045--13122546 Score: 477
Period size: 158 Copynumber: 3.2 Consensus size: 156
13122035 CCCAGTCTAA
* * * * * *
13122045 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGCGGCAGCAGGAT-GACA
* * * *
13122110 GCACACAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTACATCTCTAATAGGCTAAGCGCC
65 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAAT-GGCTAAGCGCC
* * * * *
13122175 CGTATGCCCGTTTTGTGGGTTGGCTTAG
129 CGCACGCTCATTTCGTGGGTTGGCTTAG
* ** ** * ** * * *
13122203 GCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAACAGGATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGCGGCAGCAGGATGA-CA
* * * * * * * * *
13122268 ACACGCAGAGGGGGATCGGGCCGATCCTCGGCTTACGCATTATGCCTCTCCGATTGGCTCAGCAC
65 GCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCC-AATGGCTAAGCGC
* *
13122333 CCACACGCTCATTTCGTGGGTTGACTTAG
128 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* * *
13122362 GCATACGGAGTTTATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGCGACAGCAGGACTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGCGGCAGCAGGA-TGACA
* * * * * *
13122427 GCACGCAGGAGGGAGCGGGTC-AGTCCCCGACTTGCGCATTCTACCTCTCCAACTGGCTGAGTGC
65 GCACGCAGGGGGGACCGGGCCGA-TCCCCGGCTTGCGCATTCTACCTCTCCAA-TGGCTAAGCGC
*
13122491 CCGCACGTTCATTTCGTGGGTTGGCTTAG
128 CCGCACGCTCATTTCGTGGGTTGGCTTAG
*
13122520 GCATACGAAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
13122547 CATACGGAGT
Statistics
Matches: 268, Mismatches: 69, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
157 6 0.02
158 139 0.52
159 119 0.44
160 4 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGCGGCAGCAGGATGACAG
CACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAATGGCTAAGCGCCCG
CACGCTCATTTCGTGGGTTGGCTTAG
Found at i:13122557 original size:26 final size:26
Alignment explanation
Indices: 13122520--13122572 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13122510 GTTGGCTTAG
13122520 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
13122546 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13122572 G
1 G
13122573 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13122917 original size:26 final size:26
Alignment explanation
Indices: 13122887--13122939 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13122877 GTTGACTTAG
13122887 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13122913 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13122939 G
1 G
13122940 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13125679 original size:26 final size:26
Alignment explanation
Indices: 13125650--13125702 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13125640 GTTGACTTAG
* *
13125650 GCATGCAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13125676 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13125702 G
1 G
13125703 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13127521 original size:26 final size:26
Alignment explanation
Indices: 13127485--13127537 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13127475 GTTGACTTAG
13127485 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
* *
13127511 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
13127537 G
1 G
13127538 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAGTCTAA
Found at i:13127840 original size:159 final size:159
Alignment explanation
Indices: 13127545--13128331 Score: 694
Period size: 159 Copynumber: 5.0 Consensus size: 159
13127535 AAGATCGGAT
* * * * * * * *
13127545 CGGATCGAGGGTTGCGGCAGTAGGATCGACAGCACGTAG-GGGGGACCGCGTCAAT-CCTCGGCT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCT-GGCT
** * * ** * * *
13127608 TGTGCATTCTGCCTCTCTGGCCAACTTAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCAT
65 TACGCATTATGCCTCTCCGGCTGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
* **
13127673 AGGGAGTTCATTCCATGTCTAAGCCCCAGT
130 ACGGAGTTCATTCCATGTCTAAGCCCCAAC
* **
13127703 CGGACCGAGGGTTGTGGCAGCGGGA-CTGACAGCACGCAGAGGGGGATCGGGCCGATCTTTGGCT
1 CGGACCGAGGGTTGTGGCAGCAGGATC-GACAGCACGCAGAGGGGGATCGGGCCGATCCCTGGCT
* * * * * * * *
13127767 TACGCGTTATGCCTCTCCGGCTGGCTCAGTGCCCACATGCTCGTTTCGTTGGTTGACTTAGGCAT
65 TACGCATTATGCCTCTCCGGCTGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
** *
13127832 ACGGAGTTCATTCCCA-GTCTAAGATCGAAC
130 ACGGAGTTCATT-CCATGTCTAAGCCCCAAC
* * * * * *
13127862 CGGACCGAGGGTTGTGGTAGCAGGATCGATAGCACGTAG-GGGGGATCGAGCCGATCCCCGACTT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTT
* * * * * * * *
13127926 ACGCATTCTGCCTCTTCAG-TCGACTGAGCGCCCGCGCACCCGTTTCGTGGGTTGGCTTAGGCAT
66 ACGCATTATGCCTCTCCGGCT-GACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
* *
13127990 AGGGAGTTCATTCCATGTCTAAGCCCCAGC
130 ACGGAGTTCATTCCATGTCTAAGCCCCAAC
* * * * * * * *
13128020 CAGACTGAAGGTCGTGGCAGCGGGA-CTGGCAGCACGCGGAGGGGGATCGGGCAGATCCCTGGCT
1 CGGACCGAGGGTTGTGGCAGCAGGATC-GACAGCACGCAGAGGGGGATCGGGCCGATCCCTGGCT
* * * * *
13128084 TACGGATTATGCCTCTCCGGCCGACTTAGTGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
65 TACGCATTATGCCTCTCCGGCTGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
* **** *
13128149 ACGAAGTTCATTCCCA-GTCTAAGATAGAAT
130 ACGGAGTTCATT-CCATGTCTAAGCCCCAAC
* * * * * * *
13128179 CGGATCGAGGGTTGCGGCAGTAGGATCGACAGTACGTA-AGGGGGGATCGGGCTGGTCCCTGGCT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGA-GGGGGATCGGGCCGATCCCTGGCT
* * * * *
13128243 TGCACATTCTGCCTCTTCGGCTTG-CTGAGTGCCCGCAGGCTCGTTTCATGGGTTGGCTTAGGCA
65 TACGCATTATGCCTCTCCGGC-TGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCA
*
13128307 TATGGAGTTCATTCCATGTCTAAGC
129 TACGGAGTTCATTCCATGTCTAAGC
13128332 ATATGGAGTT
Statistics
Matches: 491, Mismatches: 123, Indels: 29
0.76 0.19 0.05
Matches are distributed among these distances:
157 6 0.01
158 152 0.31
159 323 0.66
160 10 0.02
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (159 bp):
CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTT
ACGCATTATGCCTCTCCGGCTGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
CGGAGTTCATTCCATGTCTAAGCCCCAAC
Found at i:13128096 original size:317 final size:317
Alignment explanation
Indices: 13127511--13128331 Score: 1092
Period size: 317 Copynumber: 2.6 Consensus size: 317
13127501 CCCAGTCTAA
* *
13127511 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGCGGCAGTAGGATCGACA
* * * * * * * * *
13127576 GCACGTAGGGGGGACCGCGTCAATCCTCGGCTTGTGCATTCTGCCTC-TCTGGCCAACTTAGCGC
66 GCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTC-GGTCGACTGAGCGC
* * *
13127640 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
130 CCGCGCGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * **
13127705 GACCGAGGGTTGTGGCAGCGGGACTGACAGCACGCAGAGGGGGATCGGGCCGATCTTTGGCTTAC
195 GACCGAAGGTCGTGGCAGCGGGACTGACAGCACGCAGAGGGGGATCGGGCAGATCCCTGGCTTAC
* * * * *
13127770 GCGTTATGCCTCTCCGGCTGGCTCAGTGCCCACATGCTCGTTTCGTTGGTTGACTTAG
260 GCGTTATGCCTCTCCGGCCGACTCAGTGCCCACACGCTCGTTTCATGGGTTGACTTAG
* * * * * *
13127828 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGCGGCAGTAGGATCGACA
* * *
13127893 GCACGTAGGGGGGATCGAGCCGATCCCCGACTTACGCATTCTGCCTCTTCAGTCGACTGAGCGCC
66 GCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCGCC
* *
13127958 CGCGCACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
131 CGCGCGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
* * *
13128023 ACTGAAGGTCGTGGCAGCGGGACTGGCAGCACGCGGAGGGGGATCGGGCAGATCCCTGGCTTACG
196 ACCGAAGGTCGTGGCAGCGGGACTGACAGCACGCAGAGGGGGATCGGGCAGATCCCTGGCTTACG
* * *
13128088 -GATTATGCCTCTCCGGCCGACTTAGTGCTCGCACGCTCGTTTCATGGGTTGACTTAG
261 CG-TTATGCCTCTCCGGCCGACTCAGTGCCCACACGCTCGTTTCATGGGTTGACTTAG
* *
13128145 GCATACGAAGTTCATTCCCAGTCTAAGATAGAATCGGATCGAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGCGGCAGTAGGATCGACA
* * * * * * * *
13128210 GTACGTAAGGGGGGATCGGGCTGGTCCCTGGCTTGCACATTCTGCCTCTTCGGCTTG-CTGAGTG
66 GCACGT-AGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGG-TCGACTGAGCG
* *
13128274 CCCGCAG-GCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
129 CCCGC-GCGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
13128332 ATATGGAGTT
Statistics
Matches: 435, Mismatches: 64, Indels: 9
0.86 0.13 0.02
Matches are distributed among these distances:
316 1 0.00
317 333 0.77
318 98 0.23
319 3 0.01
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGCGGCAGTAGGATCGACA
GCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCGCC
CGCGCGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
ACCGAAGGTCGTGGCAGCGGGACTGACAGCACGCAGAGGGGGATCGGGCAGATCCCTGGCTTACG
CGTTATGCCTCTCCGGCCGACTCAGTGCCCACACGCTCGTTTCATGGGTTGACTTAG
Found at i:13128334 original size:26 final size:26
Alignment explanation
Indices: 13128304--13128356 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13128294 GTTGGCTTAG
13128304 GCATATGGAGTTCATTCC-ATGTCTAA
1 GCATATGGAGTTCATTCCTA-GTCTAA
13128330 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCTAGTCTAA
13128356 G
1 G
13128357 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCTAGTCTAA
Found at i:13129752 original size:26 final size:26
Alignment explanation
Indices: 13129722--13129774 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13129712 GTTGACTTAG
*
13129722 GTATACGGAGTTCATCCCCTGTCTAA
1 GTATACGGAGTTCATCCCCAGTCTAA
*
13129748 GTATACGGAGTTCATTCCCAGTCTAA
1 GTATACGGAGTTCATCCCCAGTCTAA
13129774 G
1 G
13129775 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GTATACGGAGTTCATCCCCAGTCTAA
Found at i:13130552 original size:26 final size:26
Alignment explanation
Indices: 13130523--13130575 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13130513 GTTGACTTAG
13130523 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** * *
13130549 GCATATGGTGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13130575 G
1 G
13130576 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13130614 original size:12 final size:12
Alignment explanation
Indices: 13130597--13130628 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
13130587 CCGAGGGTTA
13130597 CGACAGCAGGAT
1 CGACAGCAGGAT
13130609 CGACAGCAGGAT
1 CGACAGCAGGAT
13130621 CGACAGCA
1 CGACAGCA
13130629 TGTAAGGGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.34, C:0.28, G:0.31, T:0.06
Consensus pattern (12 bp):
CGACAGCAGGAT
Found at i:13131072 original size:26 final size:26
Alignment explanation
Indices: 13131036--13131088 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13131026 GTTGGCTTAG
13131036 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13131062 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13131088 G
1 G
13131089 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13132060 original size:159 final size:158
Alignment explanation
Indices: 13131750--13132081 Score: 423
Period size: 159 Copynumber: 2.1 Consensus size: 158
13131740 CCCAGTCTAA
* * * * * * * *
13131750 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAAGGTTGCGGTAGTAGGATCGGTA
1 GCATACGGAGTTCATCCCCAGTCTAAGATCAGACCAAACCAAAGGTTACGGCAGCAGGATCGATA
* * * *
13131815 GCACGCATGGGGGACCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCC
66 GCACGCATGAGGGACCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGATTGAGCACC
*
13131880 CGCACGCTCATTTTATGGGTTGACTTAG
131 CGCACGCTCATTTCATGGGTTGACTTAG
* * * *
13131908 GCATACGGAGTTCATCCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGGCAGCAGGATTGATA
1 GCATACGGAGTTCATCCCCAGTCTAAGATCAGACCAAACCAAAGGTTACGGCAGCAGGATCGATA
* * * * *
13131973 GCACGCATGAAGGGATCGGGTCAGA-CCTTGGCTTGTGCATTCTGTCTCTCCGATCGATTGAGCA
66 GCACGCATG-AGGGACCGAGTC-GATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGATTGAGCA
* *
13132037 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCATTTCATGGGTTGACTTAG
13132067 GCATACGGAGTTCAT
1 GCATACGGAGTTCAT
13132082 TCCATGTCTA
Statistics
Matches: 148, Mismatches: 24, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
158 62 0.42
159 84 0.57
160 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATCCCCAGTCTAAGATCAGACCAAACCAAAGGTTACGGCAGCAGGATCGATA
GCACGCATGAGGGACCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGATTGAGCACC
CGCACGCTCATTTCATGGGTTGACTTAG
Found at i:13132103 original size:26 final size:26
Alignment explanation
Indices: 13132067--13132119 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13132057 GTTGGCTTAG
13132067 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
*
13132093 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
13132119 G
1 G
13132120 ATAAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:13133059 original size:26 final size:26
Alignment explanation
Indices: 13133020--13133075 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
13133010 TGGGTGGACT
*
13133020 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
* *
13133046 TAAGCATATAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
13133072 TAAG
1 TAAG
13133076 ATCAAACTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:13133550 original size:26 final size:26
Alignment explanation
Indices: 13133521--13133574 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
13133511 TGGGTTGGCT
13133521 TAGGCATACGAAGTTCATTC-CATGTC
1 TAGGCATACGAAGTTCATTCGCA-GTC
*
13133547 TAGGCATACGGAGTTCATTCGCAGTC
1 TAGGCATACGAAGTTCATTCGCAGTC
13133573 TA
1 TA
13133575 AGATCAGACC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (26 bp):
TAGGCATACGAAGTTCATTCGCAGTC
Found at i:13134452 original size:26 final size:26
Alignment explanation
Indices: 13134416--13134468 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13134406 GTTGGCTTAG
13134416 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
*
13134442 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
13134468 G
1 G
13134469 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:13135173 original size:26 final size:26
Alignment explanation
Indices: 13135137--13135187 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13135127 GTCGACTTAG
*
13135137 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTAATTCC-CAGTCTAA
13135163 GCATACGGAGTTAATTCCCAGTCTA
1 GCATACGGAGTTAATTCCCAGTCTA
13135188 GGATCAGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:13135637 original size:158 final size:160
Alignment explanation
Indices: 13135163--13135663 Score: 515
Period size: 159 Copynumber: 3.2 Consensus size: 160
13135153 CTCAGTCTAA
* * ** * *
13135163 GCATACGGAGTTAATTCCC-AGTCTAGGATCAGATTGGACCGAGGGTTGC-GCAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * *
13135226 AGCACGCAGGGGGGATCGAGTCAAT-TCTCGGCTTGTGCATTCTGCCT-TTCCGACCGGCTGAGC
66 AGCACGCAGGGGGGATCGGGTCAGTCCCT-GGCTTGCGCATTCTGCCTCTTCCGACCGGCTGAGC
*
13135289 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
130 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * **
13135320 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGA-TCGAGGGTTGTGGCAGTGGGA-CT
1 GCATACGGAGTTCATTCCCAAGTCTAAG-ATCAGACCGGACT-GAGGGTTGCGGCAGCAGGATC-
* * *
13135381 GGCAGCACGCAGAGGGGGATCGGATC-GATCCCTGGCTTGCGCATTATGCCTC-TCCGACCGGCT
63 GACAGCACGCAG-GGGGGATCGGGTCAG-TCCCTGGCTTGCGCATTCTGCCTCTTCCGACCGGCT
* * * *
13135444 CAACGCCCGCACACTCGTTTCGTGGGTTGACTTAG
126 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
13135479 GCATATGGAGTTCATTCCCAAG-CTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * * * *
13135543 AGCACGTAGGGGGGACCGGGCCAGTCCCTGGCTTGCGCATTCTGCGTCTTCAG-CCGGCTGAGCA
66 AGCACGCAGGGGGGATCGGGTCAGTCCCTGGCTTGCGCATTCTGCCTCTTCCGACCGGCTGAGCG
* * *
13135607 CCCGCGCGCTCGTTTCATGGGTTGGGTTAG
131 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
13135637 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCAAGTCTAAG
13135664 CATACGGAGT
Statistics
Matches: 275, Mismatches: 53, Indels: 31
0.77 0.15 0.09
Matches are distributed among these distances:
156 2 0.01
157 35 0.13
158 108 0.39
159 122 0.44
160 8 0.03
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCCAAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGAC
AGCACGCAGGGGGGATCGGGTCAGTCCCTGGCTTGCGCATTCTGCCTCTTCCGACCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13135667 original size:26 final size:26
Alignment explanation
Indices: 13135637--13135689 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13135627 GTTGGGTTAG
13135637 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13135663 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13135689 G
1 G
13135690 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13136371 original size:26 final size:26
Alignment explanation
Indices: 13136341--13136393 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13136331 GTTGACTTAG
*
13136341 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
13136367 GCATACAGATTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13136393 G
1 G
13136394 ATCGAACTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13136729 original size:159 final size:159
Alignment explanation
Indices: 13136450--13136868 Score: 382
Period size: 159 Copynumber: 2.6 Consensus size: 159
13136440 GGGGATCGGA
* * * * * * *
13136450 CCGATCCCCGACTTACGCATTCTGCCTCTCCGG-TCGGCTGAGCGCCCGCACGCACATTTCGTGG
1 CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCT-GGCTCAGCACCCGCACGCTCGTTTCATGG
* * * * **** ** * * * *
13136514 GATGGCTTAGGCATAGGGAGTTCATTCC-ATGTCTAAG-CCCCAGTCGGACCGAGGGTTATGGCC
65 GTTGACTTAGGCATACGAAGTTCATTCCTA-GTCTAAGATTGGA-TTAGACTGAGGGTTACGACA
* *
13136577 GCGGGACCGACAGCATGCA-GTGGGGGACCAAG
128 ACAGGACCGACAGCATGCATG-GGGGGACCAAG
* * * *
13136609 CCGATCCCCGGCTTGTGCATT-AGTCCTCTCC-GATCGGCTCAGCACTCGCACGCTCGTTTCATG
1 CCGATCCCCGGCTTGCGCATTCTG-CCTCTCCGGCT-GGCTCAGCACCCGCACGCTCGTTTCATG
* *
13136672 GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGATTAGACTGAGGGTTGCGACAA
64 GGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGATTGGATTAGACTGAGGGTTACGACAA
* * **
13136737 CAGGATCGACAGCATGCATGGGGGGATCGGG
129 CAGGACCGACAGCATGCATGGGGGGACCAAG
* * * * *
13136768 TCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTTGCTGAGCACCCGCACGCTCGTTTCGTGGG
1 CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTCAGCACCCGCACGCTCGTTTCATGGG
* *
13136833 TTGGCTTAGGCATACGAAGTTCATTCCTTGTCTAAG
66 TTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAG
13136869 CATACAAAGT
Statistics
Matches: 211, Mismatches: 42, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
158 2 0.01
159 203 0.96
160 6 0.03
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (159 bp):
CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTCAGCACCCGCACGCTCGTTTCATGGG
TTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGATTGGATTAGACTGAGGGTTACGACAACA
GGACCGACAGCATGCATGGGGGGACCAAG
Found at i:13136878 original size:26 final size:26
Alignment explanation
Indices: 13136842--13136894 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13136832 GTTGGCTTAG
* **
13136842 GCATACGAAGTTCATTCCTTGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
13136868 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
13136894 G
1 G
13136895 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:13137004 original size:185 final size:185
Alignment explanation
Indices: 13136691--13137054 Score: 516
Period size: 185 Copynumber: 2.0 Consensus size: 185
13136681 AGGCATACGG
* * * * * *
13136691 AGTTCATTCCTAGTCTAAGATTGGATTAGACTGAGGGTTGCGACAACAGGATCGACAGCATGCAT
1 AGTTCATTCCCAGTCTAAGATCGAATCAGACTGAGGGTTGCGACAACAGGATCGACAGCACGCAG
* ** * * * *
13136756 GGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTTGCTGAGCACCCGCACGC
66 GGGGGGATCGGGCCGATCCCCAGCTTACGCATTCTACCTCTCCGGCTGGCTGAACACCCGCACGC
13136821 TCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCT-TGTCTAAGCATACAA
131 TCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATT-CTATGTCTAAGCATACAA
* * *
13136876 AGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGCGACAGCAGGATCGGCAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCGAATCAGACTGAGGGTTGCGACAACAGGATCGACAGCACGCAG
**
13136941 GGGGGGATCGGGCCGATCCCCAGCTTACGCATTCTACCTCTCCGG-TCGGCTGAACGGCCGCACG
66 GGGGGGATCGGGCCGATCCCCAGCTTACGCATTCTACCTCTCCGGCT-GGCTGAACACCCGCACG
* *
13137005 CTTGTTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCTATGTCTAAGC
130 CTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCTATGTCTAAGC
13137055 CCCAGTCGGA
Statistics
Matches: 157, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
184 3 0.02
185 154 0.98
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.26
Consensus pattern (185 bp):
AGTTCATTCCCAGTCTAAGATCGAATCAGACTGAGGGTTGCGACAACAGGATCGACAGCACGCAG
GGGGGGATCGGGCCGATCCCCAGCTTACGCATTCTACCTCTCCGGCTGGCTGAACACCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCTATGTCTAAGCATACAA
Found at i:13137247 original size:26 final size:26
Alignment explanation
Indices: 13137211--13137263 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13137201 GTTGACTTAG
13137211 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13137237 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13137263 G
1 G
13137264 ATCAAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13137630 original size:158 final size:158
Alignment explanation
Indices: 13137245--13137632 Score: 381
Period size: 158 Copynumber: 2.5 Consensus size: 158
13137235 AAGCATATAG
* * * *
13137245 AGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTACGGC-GGTAGGATCGATAGCACGCA
1 AGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTGCGGCAGCT-GGGTCGATAGCATGCA
* * * * * * * *
13137309 GGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGTGCCCGCACGT
65 GGGGGGATCAAGCCGATCCCCGGCTTGCACATTATGCCTCTTCAGCCGGCTCAGCGCCCGCACGT
* * * *
13137374 CCGTTTCATGGGTTGGCTTAGGCATAGGG
130 CCGTTTCATGAGTTGACTTAGGCATACGA
** * * * * *
13137403 AGTTCATT-CCATGTCTAAGCCCCAGCC-AGACCGAGGGTTGTGGCAGC-GGGACGGTAGCATGC
1 AGTTCATTCCCA-GTCTAAGATCAAACCGA-ACCGAGGGTTGCGGCAGCTGGGTCGATAGCATGC
* * *
13137465 AGAGGGGGATCAAGTCGATCCCCGGCTTGCACATTATGTCTCTTCAGTCGGCTCAGCGCCCGCAC
64 AG-GGGGGATCAAGCCGATCCCCGGCTTGCACATTATGCCTCTTCAGCCGGCTCAGCGCCCGCAC
* *
13137530 GCTCC-TTTCGTGAGTTGACTTATGCATACGA
128 G-TCCGTTTCATGAGTTGACTTAGGCATACGA
** * * * * *
13137561 AGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGACAACTGGGTCGACAGCTTGCAG
1 AGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTGCGGCAGCTGGGTCGATAGCATGCAG
13137626 GGGGGAT
66 GGGGGAT
13137633 TGGGCCGATC
Statistics
Matches: 181, Mismatches: 41, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
157 17 0.09
158 143 0.79
159 21 0.12
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTGCGGCAGCTGGGTCGATAGCATGCAG
GGGGGATCAAGCCGATCCCCGGCTTGCACATTATGCCTCTTCAGCCGGCTCAGCGCCCGCACGTC
CGTTTCATGAGTTGACTTAGGCATACGA
Found at i:13144736 original size:159 final size:157
Alignment explanation
Indices: 13144513--13144874 Score: 402
Period size: 158 Copynumber: 2.3 Consensus size: 157
13144503 CCACATGCCT
* ** *
13144513 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGAGGGT
1 GTTTCGTGGGTTGGCTTAGGCATA-CGAGTTCATTCCATGTCTAAAACACAACCAAACCGAGGGT
** ** * * *
13144578 TGTGGTAGTGGGAACGACAGCACGCAGAGGGGGATTGGGTCGATCCCCGACTTGCGCATTATGCT
65 TACGGTAGCAGGAACGACAGCACGCAG-GGGGGATTAGGTCGATCCCCGACTTGCACATTATGCC
* * * *
13144643 TTTTCGACC-AGCTCAGCGCCCGTACGCTC
129 TCTCCGACCGA-CTCAGCACCCGCACGCTC
* * * * **
13144672 GTTTCATGGGTTGACTTAGGCATACGTAGTTCATTCGATGTCTAAAATAGGACCAAACCGAGGGT
1 GTTTCGTGGGTTGGCTTAGGCATACG-AGTTCATTCCATGTCTAAAACACAACCAAACCGAGGGT
* * * * * *
13144737 TACGGTAGCAGGATCGATAGCATGCAGGGGGGATTAGGTCGGTCCCCGGCTTGCACATTCTGCCT
65 TACGGTAGCAGGAACGACAGCACGCAGGGGGGATTAGGTCGATCCCCGACTTGCACATTATGCCT
*
13144802 CTCCGACCGACTGAGCACCCGCACGCTC
130 CTCCGACCGACTCAGCACCCGCACGCTC
* *
13144830 GTTTCGTGCGTTGGCTTAGGCATACAGAATTCATTCCATGTCTAA
1 GTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAA
13144875 GCATACGGAG
Statistics
Matches: 167, Mismatches: 33, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
158 92 0.55
159 75 0.45
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (157 bp):
GTTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAAACACAACCAAACCGAGGGTT
ACGGTAGCAGGAACGACAGCACGCAGGGGGGATTAGGTCGATCCCCGACTTGCACATTATGCCTC
TCCGACCGACTCAGCACCCGCACGCTC
Found at i:13144850 original size:158 final size:158
Alignment explanation
Indices: 13144461--13144874 Score: 438
Period size: 159 Copynumber: 2.6 Consensus size: 158
13144451 GATCGGGCCA
* * * * * *
13144461 ATCCTCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACATGC-CTGTTTCGTGGGTT
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTC-GTTTCGTGGGTT
* ** * ** **
13144525 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGAGGGTTGTGGTAGTGGG
65 GGCTTAGGCATA-CGAGTTCATTCCATGTCTAAAACACAACCAAACCGAGGGTTACGGTAGCAGG
*
13144590 AACGACAGCACGCAGAGGGGGATTGGGTCG
129 AACGACAGCACGCAGAGGGGGATTAGGTCG
* * * * * * * *
13144620 ATCCCCGACTTGCGCATTATGCTTTTTCGACC-AGCTCAGCGCCCGTACGCTCGTTTCATGGGTT
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * **
13144684 GACTTAGGCATACGTAGTTCATTCGATGTCTAAAATAGGACCAAACCGAGGGTTACGGTAGCAGG
65 GGCTTAGGCATACG-AGTTCATTCCATGTCTAAAACACAACCAAACCGAGGGTTACGGTAGCAGG
* * *
13144749 ATCGATAGCATGCAG-GGGGGATTAGGTCG
129 AACGACAGCACGCAGAGGGGGATTAGGTCG
* * * *
13144778 GTCCCCGGCTTGCACATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGCGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
*
13144843 GCTTAGGCATACAGAATTCATTCCATGTCTAA
66 GCTTAGGCATAC-GAGTTCATTCCATGTCTAA
13144875 GCATACGGAG
Statistics
Matches: 204, Mismatches: 46, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
158 92 0.45
159 111 0.54
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (158 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
GCTTAGGCATACGAGTTCATTCCATGTCTAAAACACAACCAAACCGAGGGTTACGGTAGCAGGAA
CGACAGCACGCAGAGGGGGATTAGGTCG
Found at i:13144888 original size:26 final size:26
Alignment explanation
Indices: 13144849--13144901 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13144839 GTTGGCTTAG
13144849 GCATACAGAATTCATT-CCATGTCTAA
1 GCATACAGAATTCATTCCCA-GTCTAA
* *
13144875 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
13144901 G
1 G
13144902 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:13145258 original size:26 final size:26
Alignment explanation
Indices: 13145229--13145281 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13145219 GTTGACTTAG
13145229 GCATACAGAATTCATCCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
* * * *
13145255 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
13145281 G
1 G
13145282 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAGTCTAA
Found at i:13145937 original size:25 final size:25
Alignment explanation
Indices: 13145903--13145951 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
13145893 TGACTTAGGC
13145903 ATACGGAGTTCA-TCCCTAGTCTAAG
1 ATACGGAGTTCATTCCC-AGTCTAAG
13145928 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGGAGTTCATTCCCAGTCTAA
13145952 AAGTGAATCG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (25 bp):
ATACGGAGTTCATTCCCAGTCTAAG
Found at i:13146249 original size:671 final size:679
Alignment explanation
Indices: 13144946--13146426 Score: 1702
Period size: 671 Copynumber: 2.2 Consensus size: 679
13144936 AGTAGCAAGT
* * * * *
13144946 TCGATAGCACGCAGGGGGGACTGGGCCGATCCTCGACTTACGCATTCTACCTCTCCGGCCTGTTG
1 TCGACAGCACGCAGGGGGGACTAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGG-CTGTTG
* * * * **
13145011 AGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCCCC
65 AGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAAACCC
* * * * * *
13145076 AATCGGACTGAGGGTTATGGTAGCAGGACTGGCAGCGGGATCGACAGCACACCGAGGGGGACCGG
130 AATCGGACTGAGGGTTATGGCAACAGGACCGGCAACGAGATCGACAGCACACAGAGGGGGACCGG
* * * * **
13145141 GTTGATCGTCGGCTTGCGCATTATGCCTCTCCGGTCGGCCTCTTCGGTAGGTTGAGCACCCGCAC
195 GCTGATCGTCGACTTACGCATTATGCCCCTCCGACCGG-C-CTTC-GTAGGTT-AG-ACCCGCAC
*
13145206 GCTCGTTTCACGGGTTGACTTAGGCATACAGAATTCATCCCCAGTCTAAGCATACGGAGTTCATT
255 GCTCATTTCACGGGTTGACTTAGGCATACAGAATTCATCCCCAGTCTAAGCATACGGAGTTCATT
* * * * *
13145271 CCTAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGTAGGATCGATAGCACGCCAGGCGGATT
320 CCCAGTCTAAAATCAGACCAGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCCAGGCGGATC
* ** * * * *
13145336 GAACTGATCCCCGACTTGTGCATTCTGCCTCTCCAACCGGTTGGGCACCCGTACACCCGTTTCAT
385 GAACCGATCCCCGACTTACGCATTCTGCCTCTCCAACCAGCTGAGCACCCGTACACCCATTTCAT
* *
13145401 GGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTAGGACCAAGGGTTGTGGCA
450 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACCAAGGGTTGTGGCA
* * **
13145466 GCGGGACCGACAGCATGTAGAAGGGGACCGGGTCGATCCCTAGGTTGAGCATTATGCCTCTTCGA
515 GCGGGACCGACAGCACGTAGAAGGGGACCGGGTCGATCCCGAGCCTGAGCATTATGCCTCTTCGA
* * *
13145531 TCGGCTCAGCACCCGTACGCTCGTTTCGTAGGTTGACTTATGCATACGGAGTTGATTCCCAGTCT
580 CCGGCTCAGCACCCGTACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
*
13145596 AAGATCGGA-CAGGACCGAAGGTTGCGACAACAGGA
645 AAGATCAGATC-GGACCGAAGGTTGCGACAACAGGA
* * * * *
13145631 TTGACAGCACGCAGGGGGGACCAGACCGATCCCCGGCTTACGCATTCTGCCTCTCTGGTCAGTTG
1 TCGACAGCACGCAGGGGGGACTAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGG-CTGTTG
*
13145696 AGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAAACCT
65 AGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAAACCC
** * * *
13145761 GGTCGGA-TCGAGGGTTGTGGCAACAGGACCGGCAACGAGATCGACAGCACGCAGAGGGGGATCG
130 AATCGGACT-GAGGGTTATGGCAACAGGACCGGCAACGAGATCGACAGCACACAGAGGGGGACCG
* * *
13145825 GGCTGATCTTCGACTTACGCATTATGCCCCTCCGACCGG-C-T-G-A-G-T-G-CCCGTACGTTC
194 GGCTGATCGTCGACTTACGCATTATGCCCCTCCGACCGGCCTTCGTAGGTTAGACCCGCACGCTC
** * * *
13145882 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAG-ATACGGAGTTCATTCCCA
259 ATTTCACGGGTTGACTTAGGCATACAGAATTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * ** * * * *
13145946 GTCTAAAAGTGA-ATCGGATCGAGGGTTGTGGTAGCAGGGTCGGCAGCACG-CAGGGGGGATCGG
324 GTCTAAAA-TCAGACCAGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCCA-GGCGGATCGA
* * *** ** *
13146009 GCCGATCCCCGACTTACGCATTTTGCCTCTCCGGTCAGCTGAGTGCCCGTATACCCATTTCATGG
387 ACCGATCCCCGACTTACGCATTCTGCCTCTCCAACCAGCTGAGCACCCGTACACCCATTTCATGG
* * *
13146074 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGTCCCAGCCGGACCGAA-GGTTGTGGTAG
452 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACC-AAGGGTTGTGGCAG
* * *
13146138 CGGGACC-AGTAGCACGTAGAGGGGGACCGGGTCGATCCTCGA-CCT-ACGCATTATGCCTTTTC
516 CGGGACCGA-CAGCACGTAGAAGGGGACCGGGTCGATCC-CGAGCCTGA-GCATTATGCCTCTTC
* * * **
13146200 GACCGGCTTAGCA-CCTTCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTGTCAG
578 GACCGGCTCAGCACCCGT-ACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * *
13146264 TCTAAGATCAGATCGGACTGACGGTTGCGATAGCAGGA
642 TCTAAGATCAGATCGGACCGAAGGTTGCGACAACAGGA
* * * * * ** * *
13146302 TCGACAGCACGTAGGAGGGACTAGGTCGGTCCCCGGTTTACTTATTCTGCCTTTCCGGCTGACTG
1 TCGACAGCACGCAGGGGGGACTAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCTG-TTG
* *
13146367 AGCGCCCGTATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
65 AGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
13146427 GCAAACGGAG
Statistics
Matches: 671, Mismatches: 115, Indels: 34
0.82 0.14 0.04
Matches are distributed among these distances:
670 9 0.01
671 403 0.60
672 56 0.08
674 1 0.00
676 1 0.00
677 1 0.00
678 1 0.00
679 1 0.00
681 1 0.00
682 1 0.00
684 1 0.00
685 195 0.29
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (679 bp):
TCGACAGCACGCAGGGGGGACTAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCTGTTGA
GCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAAACCCA
ATCGGACTGAGGGTTATGGCAACAGGACCGGCAACGAGATCGACAGCACACAGAGGGGGACCGGG
CTGATCGTCGACTTACGCATTATGCCCCTCCGACCGGCCTTCGTAGGTTAGACCCGCACGCTCAT
TTCACGGGTTGACTTAGGCATACAGAATTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
CTAAAATCAGACCAGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCCAGGCGGATCGAACCG
ATCCCCGACTTACGCATTCTGCCTCTCCAACCAGCTGAGCACCCGTACACCCATTTCATGGGTTG
GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACCAAGGGTTGTGGCAGCGGGA
CCGACAGCACGTAGAAGGGGACCGGGTCGATCCCGAGCCTGAGCATTATGCCTCTTCGACCGGCT
CAGCACCCGTACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AGATCGGACCGAAGGTTGCGACAACAGGA
Found at i:13148582 original size:371 final size:371
Alignment explanation
Indices: 13147552--13149138 Score: 2525
Period size: 371 Copynumber: 4.3 Consensus size: 371
13147542 GTCCGTGACG
* * * * * *
13147552 AGGGCGTGAACCGTGGCGGTCAGGCTGATCCGGGACACCTGAAGGGTGAATGCCCGGGTCCCAGA
1 AGGGTGTGAACCGTGGTGGTCAGGCTGATTCGGGACGCCGGAAGGGTGAATGCCCGGGTCCCGGA
*
13147617 GCCGCGCGGGTTCGGAGCTTAAGTCTCGACCCATGACAAGTGGTATCAGAGCCAGCCCTAAACCG
66 GCCGCGCGGGTTCGGAGCTTAAGTCTCGACCCGTGACAAGTGGTATCAGAGCCAGCCCTAAACCG
*
13147682 TTCGATCCACGCCAAGCACCTCGAGGGAGGCAGGCAGGGTGGCCAACTTCTGTGACGAGGGCGTC
131 TTCGATCCACGCCAAGCACCTCGAGGGAGGCAGGCAGGGTGGCCAACTTCCGTGACGAGGGCGTC
* *
13147747 ACGAGGTTGGGTGCGGAAGAATGTCACGGACCTAAGGGGGAGTCCTGAATCCCGCATCGAACATA
196 ACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAGGGGGAGTCCTGAATCCCACATCGAACATA
*
13147812 ATAGGAAGGTCACTGGGGTATAAAAGGGTTTACACCATCTACGCCTTGTGAGGCGCCTTTTGTAG
261 ATAGGAAGGTCACTGGGGTATAAAAGGGTTTACACCATCTACGCCTTGTGAGGCACCTTTTGTAG
*
13147877 GACAAAACCGTGAGGCCAGGGGGGCCAGAGCGGACAATACCTCATA
326 GACAAAACCGTGAGGCCAGGGGGGCCAGAGCGGACAATACCTCACA
* * *
13147923 AGGGTGTGAACCGTGGTGGTCAGGTTGATTCGGGATGCCGGAAGGGTGAATGCTC-GGTCCCGGA
1 AGGGTGTGAACCGTGGTGGTCAGGCTGATTCGGGACGCCGGAAGGGTGAATGCCCGGGTCCCGGA
* * *
13147987 GCCGTGCGGGTTCGGAGCTTAAGTCTCGACCCGTGACAAGTGGTATCAGAGCTAGCCCTATACCG
66 GCCGCGCGGGTTCGGAGCTTAAGTCTCGACCCGTGACAAGTGGTATCAGAGCCAGCCCTAAACCG
* ** * * * * * *
13148052 TTCGATCCACGTCAAGTGCCTCGAGGGAGGTAGGCAGAGTGGCCAGCCTCCGCGACGAGGACGTC
131 TTCGATCCACGCCAAGCACCTCGAGGGAGGCAGGCAGGGTGGCCAACTTCCGTGACGAGGGCGTC
* **
13148117 ACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAAGAAGAGTCCTGAATCCCACATCGAACATA
196 ACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAGGGGGAGTCCTGAATCCCACATCGAACATA
* * * * *
13148182 ATAGGAGGGTCCCTGGGGTATATAAGGGTTTACACCATCTCCGCCTTGTGAGGCGCCTTTTGTAG
261 ATAGGAAGGTCACTGGGGTATAAAAGGGTTTACACCATCTACGCCTTGTGAGGCACCTTTTGTAG
*
13148247 GACAAAACCGTGAGGCCAGGGGAGCCAGAGCGGACAATACCTCACA
326 GACAAAACCGTGAGGCCAGGGGGGCCAGAGCGGACAATACCTCACA
* * * *
13148293 AGGGTGTGAACCGTGGCGGTCAGGCTGATTCGGGACGTCGGAAGGGTGAATGCCCTGGTCCCAGA
1 AGGGTGTGAACCGTGGTGGTCAGGCTGATTCGGGACGCCGGAAGGGTGAATGCCCGGGTCCCGGA
* *
13148358 GCCGCGCGGGTTCGGAGACTTGAGTCTTGACCCGTGACAAGTGGTATCA-AGCCAGCCCTAAACC
66 GCCGCGCGGGTTCGGAG-CTTAAGTCTCGACCCGTGACAAGTGGTATCAGAGCCAGCCCTAAACC
* *
13148422 GTTCGATCCATGCCAAGCACCTCGAGGGAGGCAGGCAGGGTGGCCAACTTCCGTGATGAGGGCGT
130 GTTCGATCCACGCCAAGCACCTCGAGGGAGGCAGGCAGGGTGGCCAACTTCCGTGACGAGGGCGT
13148487 CACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAGGGGGAGTCCTGAATCCCACATCGAACAT
195 CACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAGGGGGAGTCCTGAATCCCACATCGAACAT
* * * * *
13148552 AATAAGAAGGTCATTGGGGTATAAAAGGGTTCACACCATCTTCGCCTTGTGAGGCACCTGTTGTA
260 AATAGGAAGGTCACTGGGGTATAAAAGGGTTTACACCATCTACGCCTTGTGAGGCACCTTTTGTA
13148617 GGACAAAACCGTGAGGCCAGGGGGGCCAGAGCGGACAATACCTCACA
325 GGACAAAACCGTGAGGCCAGGGGGGCCAGAGCGGACAATACCTCACA
* * * *
13148664 AGGGTGTGAACCGTGGTGAG-AAGGCTGA-TCTGGGACACCGGATGGGTGAATGCCTGGGTCCCG
1 AGGGTGTGAACCGTGGTG-GTCAGGCTGATTC-GGGACGCCGGAAGGGTGAATGCCCGGGTCCCG
* * *
13148727 GAGCCGCGTGGGTTCGGAGACTTGAGTCTCGACCCGTGACAAGTGGTATCAGAGCCAGCTCTAAA
64 GAGCCGCGCGGGTTCGGAG-CTTAAGTCTCGACCCGTGACAAGTGGTATCAGAGCCAGCCCTAAA
*
13148792 CCGTTCAATCCACGCCAAGCACCTCGAGGGAGGCAGGCAGGGTGGCCAACTTCCGTGACGAGGGC
128 CCGTTCGATCCACGCCAAGCACCTCGAGGGAGGCAGGCAGGGTGGCCAACTTCCGTGACGAGGGC
13148857 GTCACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAGGGGGAGTCCTGAATCCCACATCGAAC
193 GTCACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAGGGGGAGTCCTGAATCCCACATCGAAC
*
13148922 ATAACAGGAAGGTCACTGGGGTATAAAAGGGTTTACACCATCTACGCCTTGTGAGGCACCTTTTG
258 ATAATAGGAAGGTCACTGGGGTATAAAAGGGTTTACACCATCTACGCCTTGTGAGGCACCTTTTG
*
13148987 TAGGACAAAACCGTGAGGACAGGGGGGCCAGAGCGGACAATACCTCACA
323 TAGGACAAAACCGTGAGGCCAGGGGGGCCAGAGCGGACAATACCTCACA
* * * * *
13149036 AGGATGTGAACTGTGGTGGTCAGGTTGATTCGGGATGCCGAAAGGGTGAATGCCCGGGTCCCGGA
1 AGGGTGTGAACCGTGGTGGTCAGGCTGATTCGGGACGCCGGAAGGGTGAATGCCCGGGTCCCGGA
*
13149101 GCCGCACGGGTTCGGAGCTTAAGTCTCGACCCGTGACA
66 GCCGCGCGGGTTCGGAGCTTAAGTCTCGACCCGTGACA
13149139 CCTGCACGTC
Statistics
Matches: 1107, Mismatches: 102, Indels: 14
0.91 0.08 0.01
Matches are distributed among these distances:
370 341 0.31
371 422 0.38
372 342 0.31
373 2 0.00
ACGTcount: A:0.24, C:0.24, G:0.34, T:0.18
Consensus pattern (371 bp):
AGGGTGTGAACCGTGGTGGTCAGGCTGATTCGGGACGCCGGAAGGGTGAATGCCCGGGTCCCGGA
GCCGCGCGGGTTCGGAGCTTAAGTCTCGACCCGTGACAAGTGGTATCAGAGCCAGCCCTAAACCG
TTCGATCCACGCCAAGCACCTCGAGGGAGGCAGGCAGGGTGGCCAACTTCCGTGACGAGGGCGTC
ACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAGGGGGAGTCCTGAATCCCACATCGAACATA
ATAGGAAGGTCACTGGGGTATAAAAGGGTTTACACCATCTACGCCTTGTGAGGCACCTTTTGTAG
GACAAAACCGTGAGGCCAGGGGGGCCAGAGCGGACAATACCTCACA
Found at i:13149490 original size:26 final size:26
Alignment explanation
Indices: 13149454--13149506 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13149444 GTTGGATTAG
13149454 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
*
13149480 GCATACGGAGTTCTTTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
13149506 G
1 G
13149507 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:13150582 original size:159 final size:160
Alignment explanation
Indices: 13150199--13151017 Score: 587
Period size: 159 Copynumber: 5.2 Consensus size: 160
13150189 CCAGTCTAAA
* * * * * * *
13150199 CATATGGAGTTCATTCC-CAGCCTAAGATTGGATCAGACCAAGGATTATGGCAGCAGGATC-AGC
1 CATACGGAGTTCATTCCAC-GTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGACCGA-C
* * * * * * * * * * *
13150262 AGCATG-TAAGGGGGA-CCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGTTCAGT
64 AGCACGCAAAGAGGGATCGAGCTCGATCCCTGGCTTGCACATTATGCCTCTCCGACCAGTTCAGT
* * * *
13150325 GCCCGCACTCCCATTTCATGGGTTGCCTTAGG
129 GCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * * *
13150357 CATA-GGAAGTTCATTCCATGTTTAAG---CG-CCAGTCGCACCGAGGGTTGTGGCAGCGGGACC
1 CATACGG-AGTTCATTCCACGTCTAAGATTGGACCA---G-ACCGAGGGTTGTGGCAGCAGGACC
* * *
13150417 GGCAGCATGCAAAGAGGGATCGAGCT-GATCCCTGGCTTGCACATTATGCCTCTCTGACCAGTTC
61 GACAGCACGCAAAGAGGGATCGAGCTCGATCCCTGGCTTGCACATTATGCCTCTCCGACCAGTTC
* * * **
13150481 AGCGCTCGTACGCTCATTTCGTGGGTCAACTTAGG
126 AGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
** *
13150516 CATACGGAGTTCATTCC-CAGTCTAAGATTGGACCAGACCGAGGGTTGCAGCAGCAGGATCGACA
1 CATACGGAGTTCATTCCAC-GTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGACCGACA
* * * * * * *
13150580 GCACGCAGAGGGGGATC-AGGTCGATCTCC-GGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGT
65 GCACGCAAAGAGGGATCGAGCTCGATC-CCTGGCTTGCACATTATGCCTCTCCGACCAGTTCAGT
* * * * *
13150643 GCCCGTACGCTCGTTTCATGGGATGGCTTAGG
129 GCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * *** * * *
13150675 CATGCGGAGTTCATTCCATGTCTAATCCCTAG-CCAGACCGAGGGTTGTGGTAGCTGGACCGACA
1 CATACGGAGTTCATTCCACGTCTAA-GATTGGACCAGACCGAGGGTTGTGGCAGCAGGACCGACA
* * * * * * * * * *
13150739 GCACACAGAG-GGGAACCAGGTCGAT-CCTCAGCTTGCACATTAAGCCTCTCCGGCCGGCTCAGT
65 GCACGCAAAGAGGGATCGAGCTCGATCCCT-GGCTTGCACATTATGCCTCTCCGACCAGTTCAGT
*
13150802 ACCCGCACGCTCATTTCGTGGGTTGACTTAGG
129 GCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * * * * * * * *
13150834 CATACGGAGTTCATTCC-CAATCTAAGATCGGACCGGACCGAAGGCTATGGTAGTAGGATCGACA
1 CATACGGAGTTCATTCCAC-GTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGACCGACA
* * * * * * * * * *
13150898 GCACGC-AGGGGGGACCGGGC-CGATCCCTGACTTACGCATTCTGCCTCTCCGGCCAGTTGAGTG
65 GCACGCAAAGAGGGATCGAGCTCGATCCCTGGCTTGCACATTATGCCTCTCCGACCAGTTCAGTG
* * *
13150961 CCCGCACGCTCGTTTCGTGGGTTGGCTTAAG
130 CCCGCACGCTCATTTCGTGGGTTGACTTAGG
13150992 CATACGGAGTTCATTCCACGTCTAAG
1 CATACGGAGTTCATTCCACGTCTAAG
13151018 CATACGGAGT
Statistics
Matches: 516, Mismatches: 118, Indels: 54
0.75 0.17 0.08
Matches are distributed among these distances:
154 2 0.00
155 1 0.00
157 5 0.01
158 135 0.26
159 358 0.69
160 11 0.02
162 1 0.00
163 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (160 bp):
CATACGGAGTTCATTCCACGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGACCGACAG
CACGCAAAGAGGGATCGAGCTCGATCCCTGGCTTGCACATTATGCCTCTCCGACCAGTTCAGTGC
CCGCACGCTCATTTCGTGGGTTGACTTAGG
Found at i:13150780 original size:318 final size:314
Alignment explanation
Indices: 13150199--13151018 Score: 936
Period size: 318 Copynumber: 2.6 Consensus size: 314
13150189 CCAGTCTAAA
* * * *
13150199 CATATGGAGTTCATTCCCAGCCTAAGATTGGATCAGACCAAGGATTATGGCAGCAGGATC-AGCA
1 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGA-T-TGGCAGCAGGATCGA-CA
* * * *
13150263 GCATGTA-AGGGGGACCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGTTCAGTGC
63 GCACGCAGAGGGGGACCAGGTCGAT-CCCGGCTTACGCATTCTGCCTCTCCGACCGGTTGAGTGC
* * * * * * *
13150327 CCGCACTCCCATTTCATGGGTTGCCTTAGGCATAG-GAAGTTCATTCCATGTTTAAGCGCCAGTC
127 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT-GCGGAGTTCATTCCATGTCTAAGCGCCAGCC
* * * *
13150391 GCACCGAGGGTTGTGGCAGCGGGACCGGCAGCATGCAAAGAGGGATCGAGCTGATCCCTGGCTTG
191 GCACCGAGGGTTGTGGCAGCGGGACCGACAGCA-GCAAAGAGGGAACCAGCTGATCCCTAGCTTG
* * * * * *
13150456 CACATTATGCCTCTCTGACCAGTTCAGCGCTCGTACGCTCATTTCGTGGGTCAACTTAGG
255 CACATTAAGCCTCTCCGACCAGCTCAGCACCCGCACGCTCATTTCGTGGGTCAACTTAGG
*
13150516 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGATTG--GCAGCAGGATCGACAG
* *
13150581 CACGCAGAGGGGGATCAGGTCGATCTCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGTGCC
64 CACGCAGAGGGGGACCAGGTCGATC-CCGGCTTACGCATTCTGCCTCTCCGACCGGTTGAGTGCC
* * *
13150646 CGTACGCTCGTTTCATGGGATGGCTTAGGCATGCGGAGTTCATTCCATGTCTAATC-CCTAGCCA
128 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAAGCGCC-AGCC-
* * * *
13150710 G-ACCGAGGGTTGTGGTAGCTGGACCGACAGCA-CACAGAGGGGAACCAGGTCGAT-CCTCAGCT
191 GCACCGAGGGTTGTGGCAGCGGGACCGACAGCAGCAAAGA-GGGAACCAGCT-GATCCCT-AGCT
* * * **
13150772 TGCACATTAAGCCTCTCCGGCCGGCTCAGTACCCGCACGCTCATTTCGTGGGTTGACTTAGG
253 TGCACATTAAGCCTCTCCGACCAGCTCAGCACCCGCACGCTCATTTCGTGGGTCAACTTAGG
* * * * * *
13150834 CATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAAGGCTATGGTAGTAGGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCG-AGGAT-TGGCAGCAGGATCGACAG
* * * * *
13150899 CACGCAG-GGGGGACCGGGCCGATCCCTGACTTACGCATTCTGCCTCTCCGGCCAGTTGAGTGCC
64 CACGCAGAGGGGGACCAGGTCGATCCC-GGCTTACGCATTCTGCCTCTCCGACCGGTTGAGTGCC
* * * *
13150963 CGCACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCACGTCTAAGC
128 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAAGC
13151019 ATACGGAGTT
Statistics
Matches: 429, Mismatches: 60, Indels: 28
0.83 0.12 0.05
Matches are distributed among these distances:
315 2 0.00
316 8 0.02
317 168 0.39
318 244 0.57
319 5 0.01
320 2 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (314 bp):
CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGATTGGCAGCAGGATCGACAGCA
CGCAGAGGGGGACCAGGTCGATCCCGGCTTACGCATTCTGCCTCTCCGACCGGTTGAGTGCCCGC
ACGCTCGTTTCATGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAAGCGCCAGCCGCACC
GAGGGTTGTGGCAGCGGGACCGACAGCAGCAAAGAGGGAACCAGCTGATCCCTAGCTTGCACATT
AAGCCTCTCCGACCAGCTCAGCACCCGCACGCTCATTTCGTGGGTCAACTTAGG
Found at i:13151024 original size:26 final size:26
Alignment explanation
Indices: 13150988--13151043 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
13150978 TGGGTTGGCT
13150988 TAAGCATACGGAGTTCATTCC-ACGTC
1 TAAGCATACGGAGTTCATTCCTA-GTC
13151014 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCTAGTC
13151040 TAAG
1 TAAG
13151044 ATCGGATCAG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCTAGTC
Found at i:13151273 original size:19 final size:19
Alignment explanation
Indices: 13151249--13151285 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
13151239 AGGAGGACTG
13151249 GCAGCGGGATCGATAGCAT
1 GCAGCGGGATCGATAGCAT
*
13151268 GCAGCGGGATCGGTAGCA
1 GCAGCGGGATCGATAGCA
13151286 GGGCACCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.22, G:0.41, T:0.14
Consensus pattern (19 bp):
GCAGCGGGATCGATAGCAT
Found at i:13151386 original size:25 final size:24
Alignment explanation
Indices: 13151331--13151384 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
13151321 TCGGCGGCAT
*
13151331 TGGGGGTTTCGACAATTGGGGGAC
1 TGGGGGTTCCGACAATTGGGGGAC
13151355 TGGGGGTTCCGACAATTGGGGGAC
1 TGGGGGTTCCGACAATTGGGGGAC
13151379 TGGGGG
1 TGGGGG
13151385 GTGTGCCCAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.15, C:0.13, G:0.50, T:0.22
Consensus pattern (24 bp):
TGGGGGTTCCGACAATTGGGGGAC
Found at i:13151951 original size:26 final size:26
Alignment explanation
Indices: 13151915--13151967 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13151905 GTTGACTTAG
*
13151915 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13151941 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13151967 G
1 G
13151968 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13152259 original size:159 final size:158
Alignment explanation
Indices: 13152081--13152443 Score: 383
Period size: 158 Copynumber: 2.3 Consensus size: 158
13152071 CAAACGCCCA
* * *
13152081 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-TCAGACCG-AGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGACCAGA-CGAAGGG
** * ** *
13152144 TTGTGGTAGCAGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCTCAG-CTTGTGCATTATG
64 TTGTGACAGCAGGACCGACAGCACGCAG-GAGGGACCGAGCCGATCC-CAGACTTACGCATTATA
* * *
13152208 CCTCTTCGGTCCTCTCAGCACCCGAACGCTCG
127 CCTCTCCAGTCCGCTCAGCACCCGAACGCTCG
* ** *
13152240 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACGAAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCAGACGAAGGGT
* * * * * * *
13152304 TGTGACAGCAGGATCGACAGCATGCAGGAGGGACCGGGTCGATCCCCGACTTACGTATTCTACCT
65 TGTGACAGCAGGACCGACAGCACGCAGGAGGGACCGAGCCGATCCCAGACTTACGCATTATACCT
** * * **
13152369 CTCCAGTTGGCTGAGCGCCCGCGCGCTCG
130 CTCCAGTCCGCTCAGCACCCGAACGCTCG
*
13152398 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13152444 ATATGGGGTT
Statistics
Matches: 167, Mismatches: 32, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
157 5 0.03
158 89 0.53
159 70 0.42
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAGACGAAGGGTT
GTGACAGCAGGACCGACAGCACGCAGGAGGGACCGAGCCGATCCCAGACTTACGCATTATACCTC
TCCAGTCCGCTCAGCACCCGAACGCTCG
Found at i:13153281 original size:156 final size:155
Alignment explanation
Indices: 13152820--13153311 Score: 481
Period size: 159 Copynumber: 3.1 Consensus size: 155
13152810 AAGCATGTGA
* * * *
13152820 AGTTCATTCCCAGTCTAAGATCAGATCGGAACGAGGGTTGCGACAGCAAGATCGGTAGCATGCAA
1 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGC-ACA-CAGGATCGGCAGCATGCAG
* * *
13152885 GGGGGACCGGGCCGAT-CCCAGGCTTACGCATTCTGCCTCTCCGACCGACTAAGCTCCCGCACGC
64 GGGGGACCGGG-CGATCCCCA-GCTTGCGCATTCTGCCTCTCCGACCGGCTAAGCACCCGCACGC
* * *
13152949 CCGTTTCGTGGGTTGGCTTAGGCATAGGG
127 TCGTTTCGTGGGTTGACTTAGGCATACGG
** * *
13152978 AGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCAAGGGTTGTGGTA-ACAGGATCGGCAGCATG
1 AGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGG-T-T-GCACACAGGATCGGCAGCATG
* * * * * * ** * * *
13153040 TAGAGGGGGACCGGGCTGATCCTCGGCTTGTGTATTCTGCCTCTCCAATTGGCTCAA-CGCCTGA
61 CAG-GGGGGACCGGGC-GATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCT-AAGCACCCGC
*
13153104 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGG
123 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * * *
13153137 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCACATAGGATTGACAACACGCAGGG
1 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCACACAGGATCGGCAGCATGCAGGG
** * *
13153202 GGGATTGGGTCGGTCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCG
66 GGGACCGGG-CGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGCACCCGCACGCTCG
*
13153267 TTTCGTGAGTTGACTTAGGCATACGG
130 TTTCGTGGGTTGACTTAGGCATACGG
* *
13153293 AGTTCATCCCCAGTTTAAG
1 AGTTCATTCCCAGTCTAAG
13153312 CATATGGAGT
Statistics
Matches: 266, Mismatches: 54, Indels: 30
0.76 0.15 0.09
Matches are distributed among these distances:
155 1 0.00
156 92 0.35
157 19 0.07
158 44 0.17
159 100 0.38
160 9 0.03
161 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (155 bp):
AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCACACAGGATCGGCAGCATGCAGGG
GGGACCGGGCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGCACCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGG
Found at i:13153337 original size:26 final size:26
Alignment explanation
Indices: 13153285--13153337 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
13153275 GTTGACTTAG
**
13153285 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGACTAA
* * *
13153311 GCATATGGAGTTCATTCCTAGACTAA
1 GCATACGGAGTTCATCCCCAGACTAA
13153337 G
1 G
13153338 ATCAGATCGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGACTAA
Found at i:13153470 original size:184 final size:182
Alignment explanation
Indices: 13153129--13153483 Score: 442
Period size: 184 Copynumber: 1.9 Consensus size: 182
13153119 GTTGACTTAG
* * * *
13153129 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCACATAGGATTGACAAC
1 GCATACGGAGTTCATTCCCAGACTAAGATCAGATCGGACCGAGGGTTGCACACAGGATCGACAAC
* * * *
13153194 ACGCAGGGGGGATTGGGTCGGTCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCG
66 ACGCAGAGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCG
*
13153259 CACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTTTAA
131 CACGCCCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTTTAA
* * **
13153311 GCATATGGAGTTCATTCCTAGACTAAGATCAGATCGGACCGAGGGTTGCAACAACAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGACTAAGATCAGATCGGACCGAGGGTTGC-AC-ACAGGATCGACA
* * * ** * * * * *
13153376 GCATGCAGAGGGGATCGGGCCGATCCCTAGCTTGCTTATTCTGCCTCTTCGGCCGGCTGATCGCT
64 ACACGCAGAGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACC
* * *
13153441 TGCACGCCCGTTTCGTTG-GTTGGCTTAGGCATAGGGAGTTCAT
129 CGCACGCCCGTTTCG-TGAGTTGACTTAGGCATACGGAGTTCAT
13153484 TCCATGTCTA
Statistics
Matches: 144, Mismatches: 26, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
182 45 0.31
183 2 0.01
184 95 0.66
185 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (182 bp):
GCATACGGAGTTCATTCCCAGACTAAGATCAGATCGGACCGAGGGTTGCACACAGGATCGACAAC
ACGCAGAGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCG
CACGCCCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTTTAA
Found at i:13153666 original size:343 final size:344
Alignment explanation
Indices: 13153260--13153926 Score: 869
Period size: 343 Copynumber: 1.9 Consensus size: 344
13153250 GAGCACCCGC
* * *
13153260 ACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTTTAAGCATATGGAGTTCA
1 ACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCA
* ** **
13153325 TTCCTAGACTAAGATCAGA-TCGGACCGAGGGTTGCAACAACAGGATCGGTAGCATGCAGAGGGG
66 TTCCTAGACTAAGATCAGACT-GGACCGAGGGTTACAACAACAGGATCGACAGCACACAGAGGGG
* * * *** ** *
13153389 ATCGGGCCGATCC-CTAGCTTGCTTATTCTGCCTCTT-CGGCCGGCTGA-TCGCTTGCACGCCCG
130 ACCGGGCAGATCCTC-ACCTTGAGCATTCTGCCT-TTCCAACCGGCTGAGT-GCTCGCACGCCCG
* * * *
13153451 TTTCGTTGGTTGGCTTAGGCATAGGGAG-TTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGTT
192 TTTCATGGGTTGGCTTAGGCATAGGGAGTTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGT
* * ** * *
13153515 TGTGGTAGCGGGACCGACAGCACGTAGAGGGGGA-CTGGGTCGATCCTTGGCTTACGGATTATGC
257 TGTGGTAACGGGACCGACAGCACGCAGAGAAGGATC-GGGTCGATCCCTGGCTTACGCATTATGC
13153579 CTCTTCGACTGGCTCGACGCTCGA
321 CTCTTCGACTGGCTCGACGCTCGA
* * *
13153603 ACGCTTGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCA
1 ACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCA
* * *** *
13153668 TTCCTAGTCTAAGATCAGACTGGATCGAGGGTTATGGCAACAGGATCGACAGCACACAGGGGGGA
66 TTCCTAGACTAAGATCAGACTGGACCGAGGGTTACAACAACAGGATCGACAGCACACAGAGGGGA
* *
13153733 CCGGGCAGATCCTCACCTTGAGCATTCTGCCTTTCCAACCGGTTGAGTGCTCGCACGCCTGTTTC
131 CCGGGCAGATCCTCACCTTGAGCATTCTGCCTTTCCAACCGGCTGAGTGCTCGCACGCCCGTTTC
*
13153798 ATGGGTTGGCTTAGGCATAGGGAGTTTCATTCCATGTCTGAGCCCCAGTCGGACCGAGGGTTGTG
196 ATGGGTTGGCTTAGGCATAGGGAGTTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTG
* * *
13153863 GTAACGGGACTGGCAGCACGCAGAGAAGGATCGGGTCGATCCCTGGCTTGCGCATTATGCCTCT
261 GTAACGGGACCGACAGCACGCAGAGAAGGATCGGGTCGATCCCTGGCTTACGCATTATGCCTCT
13153927 CCGGCCAGCT
Statistics
Matches: 276, Mismatches: 42, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
342 2 0.01
343 180 0.65
344 93 0.34
345 1 0.00
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (344 bp):
ACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCA
TTCCTAGACTAAGATCAGACTGGACCGAGGGTTACAACAACAGGATCGACAGCACACAGAGGGGA
CCGGGCAGATCCTCACCTTGAGCATTCTGCCTTTCCAACCGGCTGAGTGCTCGCACGCCCGTTTC
ATGGGTTGGCTTAGGCATAGGGAGTTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTG
GTAACGGGACCGACAGCACGCAGAGAAGGATCGGGTCGATCCCTGGCTTACGCATTATGCCTCTT
CGACTGGCTCGACGCTCGA
Found at i:13154294 original size:184 final size:184
Alignment explanation
Indices: 13153972--13154341 Score: 476
Period size: 184 Copynumber: 2.0 Consensus size: 184
13153962 GTTGACTTAG
* * * **
13153972 GCATATGAAGTTCATTCCCAGTCTAAGATCGGACCAAACCGATGGTTGCGGTAGCAAGATCGACT
1 GCATATAAAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAAGATCGACT
* * * *
13154037 GCACGTAGGAGGGACCGGGTCGATCCTCGACTTGCATATTCTGCCTCTCCGACCGACTGAGCACC
66 GCACATAGGAGGGACCGGGCCGATCCTCGACTAGCATATTCTACCTCTCCGACCGACTGAGCACC
* *
13154102 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CACACGCTCATTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
** * * * *
13154156 GCATATAAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGATCG-GT
1 GCATATAAAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAAGATCGACT
* * * ** *
13154220 AGCACATAGTG-GGGATCGGGCCGATCC-CAGGCTAGCGTATTCTACCTCTCCGGTCGGCTGAGC
66 -GCACATAG-GAGGGACCGGGCCGATCCTC-GACTAGCATATTCTACCTCTCCGACCGACTGAGC
*
13154283 ACCCACACGCTCGTTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
128 ACCCACACGCTCATTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
13154340 GC
1 GC
13154342 CCCAGTCGGA
Statistics
Matches: 159, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
183 2 0.01
184 156 0.98
185 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (184 bp):
GCATATAAAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAAGATCGACT
GCACATAGGAGGGACCGGGCCGATCCTCGACTAGCATATTCTACCTCTCCGACCGACTGAGCACC
CACACGCTCATTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:13154536 original size:354 final size:357
Alignment explanation
Indices: 13154078--13154725 Score: 835
Period size: 356 Copynumber: 1.8 Consensus size: 357
13154068 TTGCATATTC
* *
13154078 TGCCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
1 TGCCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTC
* * * *
13154143 ATTCCATGTCTAAGCATATAAAGTTCATTCCCAGTCT-A-AGATCAGACCGGATCGAGGGTTGCG
66 ATCCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGAGATCAGACCAGATCGAGGGTTACG
* * * * * *
13154206 ACAGTAGGATCGGTAGCACATAGTGGGGATCGGGCCGATCC-CAGGC-TAGCGTATTCTACCT-C
131 ACAGCAGGATCGGTAGCACACAGGGGGGACCGGGCCGATCCTC-GACTTA-CGCATTCTACCTCC
* *
13154268 TCCGGTCGGCTGAGCACCCACACGCTCGTTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
194 T-CGGCCGGCTGAGCACCCACACGCCCGTTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* * *
13154333 TGTCTAAGCCCCAGTCGGACCGAGGGTTATGGCAGCAAGACCGACAACAAGATTGGCAGCATGTA
258 TGTCTAAGCCCCAGCCAGACCGAGAGTTATGGCAGCAAGACCGACAACAAGATTGGCAGCATGTA
13154398 GAGGGGGACCAGGCTGATCCTCGGCTTACGCATTA
323 GAGGGGGACCAGGCTGATCCTCGGCTTACGCATTA
* * * *
13154433 TGCCTCTCCGGCC-AGCTGAGC-GCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTT
1 TGCCTCTCCGACCGA-CTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTT
* * ** *
13154496 TATCCCCA-GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAGATTGGATCAGATCGAGGGTTA
65 CAT-CCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGAGATCAGACCAGATCGAGGGTTA
** * * * *
13154560 CGGGAGCAGGATTGGTAGCACACCGGGGGGACCGGGCCGATCCTCGACTTACGCCTTCTGCCTCC
129 CGACAGCAGGATCGGTAGCACACAGGGGGGACCGGGCCGATCCTCGACTTACGCATTCTACCTCC
* * * * * * *
13154625 TCGGCCGGTTGAGCATCCGCACGCCCGTTTCGTGTGTTGGCTTAGGCATAGGGAGTTCATTTCAT
194 TCGGCCGGCTGAGCACCCACACGCCCGTTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
*
13154690 GTCTAAGCCCCAGCCAGACCGAGAGTTGTGGCAGCA
259 GTCTAAGCCCCAGCCAGACCGAGAGTTATGGCAGCA
13154726 GGATCGGTAG
Statistics
Matches: 246, Mismatches: 40, Indels: 13
0.82 0.13 0.04
Matches are distributed among these distances:
354 68 0.28
355 22 0.09
356 151 0.61
357 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (357 bp):
TGCCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTC
ATCCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGAGATCAGACCAGATCGAGGGTTACG
ACAGCAGGATCGGTAGCACACAGGGGGGACCGGGCCGATCCTCGACTTACGCATTCTACCTCCTC
GGCCGGCTGAGCACCCACACGCCCGTTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCCCCAGCCAGACCGAGAGTTATGGCAGCAAGACCGACAACAAGATTGGCAGCATGTAGAG
GGGGACCAGGCTGATCCTCGGCTTACGCATTA
Found at i:13156257 original size:158 final size:159
Alignment explanation
Indices: 13155874--13156270 Score: 412
Period size: 158 Copynumber: 2.5 Consensus size: 159
13155864 CTCGCATGCC
* * * *
13155874 CGTTTCGTGGGTTGGCTTATGCATACGGAGTTCATTTCATGTCTAAGCCCCAGCCAAACTGAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAACCT-AGGG
** * *
13155939 TTGTGGCAGCAGGATCAGTAGCACGCAGAAGAGGACCGGGCCGATCCCCGACTTGCGTATTACGC
65 TTGTGGCAGCAGGATCAGTAGCACGCAGAAGAGGACCGAACCGATCCCCGACTTGCGCATTACAC
* *
13156004 CTCTCCGATCGGGTTCAGTGCCCACACGCT
130 CTCTCCGATCGGGCTCAGTGCCCACACACT
* * * * * ** * * *
13156034 TGTTTCATGGGTTGACTTAGGCATACAGAGTTTATTCCCA-GTCTAAGATCGGATCGAACCGAGG
1 CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAG-CCCCAGCCAACCTAGG
* * * *
13156098 GTTGCGGCA-TAGGATC-GATAGCACGCAGGAAG-GGATCC-AACCGATCCTCGGCTTGCGCATT
64 GTTGTGGCAGCAGGATCAG-TAGCACGCA-GAAGAGGA-CCGAACCGATCCCCGACTTGCGCATT
* *
13156159 -CTACCTCTCCGATC-GGCTGAGTGCCCGCACACT
126 AC-ACCTCTCCGATCGGGCTCAGTGCCCACACACT
* *
13156192 CGTTTCGTGGGTAGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCAGCCAGACCTAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCA-ACCTAGGG
*
13156257 TTGTGGCAGAAGGA
65 TTGTGGCAGCAGGA
13156271 CCGACAGCGG
Statistics
Matches: 188, Mismatches: 40, Indels: 19
0.76 0.16 0.08
Matches are distributed among these distances:
157 7 0.04
158 68 0.36
159 51 0.27
160 54 0.29
161 8 0.04
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (159 bp):
CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAACCTAGGGT
TGTGGCAGCAGGATCAGTAGCACGCAGAAGAGGACCGAACCGATCCCCGACTTGCGCATTACACC
TCTCCGATCGGGCTCAGTGCCCACACACT
Found at i:13156432 original size:26 final size:26
Alignment explanation
Indices: 13156396--13156448 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13156386 GTTGACTTAG
13156396 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13156422 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13156448 G
1 G
13156449 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13156852 original size:26 final size:26
Alignment explanation
Indices: 13156822--13156874 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13156812 GTTGGCTTAC
13156822 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
13156848 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13156874 G
1 G
13156875 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13158032 original size:157 final size:156
Alignment explanation
Indices: 13157559--13158051 Score: 481
Period size: 159 Copynumber: 3.1 Consensus size: 156
13157549 AAGCATACAA
* * ** * *
13157559 AGTTCATTCTCA-GTCTAAGATCAAATCGAATTGAGGGTTGCGGTAGCAGGATCGGTAGCACGCA
1 AGTTCATTC-CATGTCTAAGATCAGACCGAATCAAGGGTTGCGGTAGCAGGATCGATAGCACGTA
* * *
13157623 GGGGGGATCAGGCTGATCCTCGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAGCGCCTGCACAC
65 -GGGGGA-CCGGCCGATCCTCGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAGCGCCTGCACTC
* * *
13157688 CCGTTTCATGGGTTGGCTTAGGCATAGGG
128 TCGTTTCGTGGGTTGGCTTAGGCATACGG
** * * * * *
13157717 AGTTCATTCCATGTCTAAGCCCCAG-CCGGATCAAGGGTTGTGGTAGCGGGACCGACAGCACGTA
1 AGTTCATTCCATGTCTAAG-ATCAGACCGAATCAAGGGTTGCGGTAGCAGGATCGATAGCACGTA
* * * * * * ** * *
13157781 GATGGGGATCGGGCCAATCCTCGACTTGCGCATTATGCCTCTCCGGCCAACTCAGCGCCCGCACG
65 G--GGGGA-CCGGCCGATCCTCGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAGCGCCTGCAC-
* *
13157846 T-TCGTTTCGTGGGTTGACTTAGGCTTACGG
126 TCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * *
13157876 AGTTCATTCCCA-GTCTAAGATCAGACCAAACCAAGGGTTACGGTAGCAGGATCGATAGCACGTA
1 AGTTCATT-CCATGTCTAAGATCAGACCGAATCAAGGGTTGCGGTAGCAGGATCGATAGCACGTA
** * ** *
13157940 GGGGGACCGGACCGATCCTCGGCTTGCGTATTCTTTCTCTCCGATCGGCTGAAAGCCTACACTCT
65 GGGGGACCGG-CCGATCCTCGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAGCGCCTGCACTCT
* *
13158005 TGTTTTGTGGGTTGGCTTAGGCATACGG
129 CGTTTCGTGGGTTGGCTTAGGCATACGG
*
13158033 AGTTTATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
13158052 CATACGGAGT
Statistics
Matches: 264, Mismatches: 61, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
156 7 0.03
157 83 0.31
158 48 0.18
159 123 0.47
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.26
Consensus pattern (156 bp):
AGTTCATTCCATGTCTAAGATCAGACCGAATCAAGGGTTGCGGTAGCAGGATCGATAGCACGTAG
GGGGACCGGCCGATCCTCGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAGCGCCTGCACTCTCG
TTTCGTGGGTTGGCTTAGGCATACGG
Found at i:13158054 original size:26 final size:26
Alignment explanation
Indices: 13158025--13158077 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13158015 GTTGGCTTAG
* *
13158025 GCATACGGAGTTTATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
13158051 GCATACGGAGTTCCTTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
13158077 G
1 G
13158078 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:13158743 original size:159 final size:151
Alignment explanation
Indices: 13158556--13158934 Score: 424
Period size: 152 Copynumber: 2.5 Consensus size: 151
13158546 GTCCGACTGG
*
13158556 GCGCTCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
1 GCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
** * * *
13158621 G-TCAAACCAAGGGTTGTGGCAGCGGGACCGGCAGCATGCAGAGGAGGA-TCGGG-CTGATCCTT
66 GCT-AAACCAAGGGTTACGACAGCGAGACC-G-A-CA-G--G-GGAGGACT-GGGTC-GATCCCT
* * *
13158683 GGCTTGCAT-ATTCTACCTCTCCGGTCGGCTGA
121 AGCTT--ATCATTCTACCTCTCCAGTCGGCTAA
* * *
13158715 GTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCA
1 GCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
* * *
13158780 GCTAGACCGAGGGTTACGACAGCGAGACCGACAGGGGTGGACTGGGTCGATCCCTAGCTTATGCA
66 GCTAAACCAAGGGTTACGACAGCGAGACCGACAGGGGAGGACTGGGTCGATCCCTAGCTTAT-CA
*
13158845 TTCTGCCTCTCCAGTCGGCTAA
130 TTCTACCTCTCCAGTCGGCTAA
* ** * *
13158867 GCGCCTGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCA
1 GCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
13158932 GCT
66 GCT
13158935 GGACCGAGGT
Statistics
Matches: 191, Mismatches: 24, Indels: 17
0.82 0.10 0.07
Matches are distributed among these distances:
150 2 0.01
152 98 0.51
153 3 0.02
155 1 0.01
156 2 0.01
157 1 0.01
158 1 0.01
159 82 0.43
160 1 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (151 bp):
GCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
GCTAAACCAAGGGTTACGACAGCGAGACCGACAGGGGAGGACTGGGTCGATCCCTAGCTTATCAT
TCTACCTCTCCAGTCGGCTAA
Found at i:13158923 original size:152 final size:151
Alignment explanation
Indices: 13158500--13158943 Score: 443
Period size: 159 Copynumber: 2.9 Consensus size: 151
13158490 TCAGTAACAT
* * * * * * *
13158500 ACAGGGGGGACTGAGCCAATCCCCAGCTTACGCATTCTGTCTCTCCGTCCGACTGGGCG-CTCGC
1 ACAGGGGGGACTG-GGCGATCCCTAGCTTATGCATTCTGCCTCTCCGT-CGGCTGAGCGCCT-GC
*
13158564 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAAAC
63 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-AGAC
* ** * *
13158628 CAAGGGTTGTGGCAGCGGGACCGGC
127 CGAGGGTTACGACAGCGAGACCGGC
* * *
13158653 AGCATGCAGAGGAGGA-TCGGGCTGATCCTTGGC-T-TGCATATTCTACCTCTCCGGTCGGCTGA
1 A-CA-G--G-GG-GGACT-GGGC-GATCCCTAGCTTATGC--ATTCTGCCTCTCC-GTCGGCTGA
* * * *
13158715 GTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCA
55 GCGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
13158780 GCTAGACCGAGGGTTACGACAGCGAGACC-G-
120 GCTAGACCGAGGGTTACGACAGCGAGACCGGC
*
13158810 ACAGGGGTGGACTGGGTCGATCCCTAGCTTATGCATTCTGCCTCTCCAGTCGGCTAAGCGCCTGC
1 ACAGGGG-GGACTGGG-CGATCCCTAGCTTATGCATTCTGCCTCTCC-GTCGGCTGAGCGCCTGC
** * * *
13158875 ACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCTGGACC
63 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACC
13158940 GAGG
128 GAGG
13158944 TTGTGGCAGC
Statistics
Matches: 239, Mismatches: 35, Indels: 35
0.77 0.11 0.11
Matches are distributed among these distances:
152 104 0.44
153 5 0.02
154 5 0.02
155 2 0.01
156 2 0.01
157 4 0.02
158 7 0.03
159 106 0.44
160 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (151 bp):
ACAGGGGGGACTGGGCGATCCCTAGCTTATGCATTCTGCCTCTCCGTCGGCTGAGCGCCTGCACG
CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAG
GGTTACGACAGCGAGACCGGC
Done.