Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 93 of 402
Found at i:13159112 original size:26 final size:26
Alignment explanation
Indices: 13159083--13159135 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13159073 GTTGACTTAG
*
13159083 GCATACGGAGTTCA-TCGCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
13159109 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13159135 G
1 G
13159136 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13159402 original size:159 final size:160
Alignment explanation
Indices: 13159109--13159613 Score: 472
Period size: 159 Copynumber: 3.2 Consensus size: 160
13159099 GCCAGTCTAA
* * * * ** *
13159109 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACCGAGGGTTGCGGTAGCAGGATTGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAAACCGAGGGTTACGACAGCAGGATCGG
* * * * *
13159172 CAGCACGTAG-GGGGGACCGGG-CGGATCCCTGGCTTACGTATTCTGCCTCTCCGG-CCGACTGA
65 CAGCACGCAGAGGGGGACCGGGTC-GATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCAG-CTGA
*
13159234 GCGCCCGCACGCCCATTTCGTGGGTTGGCTTAG
128 GCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * *
13159267 GCATAGGGAGTTCATTACATGTCTAAGCCCCAG-TCAGACCGAGGGTTATGGCAGC-GGAATCGG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCGAGGGTTACGACAGCAGG-ATCGG
* * *
13159330 CAGCACGCAGAAGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTTCGGTCAGCTCAGC
65 CAGCACGCAGAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCAGCTGAGC
* * * * *
13159395 GCCCGCACGCTCGTTTCATGGATTGACTTAT
130 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * *
13159426 ACATACAGAGTTCATTCCCA-GTCTCAG-ATCAGACCAAACTGAGGGTTGCGACAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAAACCGAGGGTTACGACAGCAGGATCGG
* * * ** * * * *
13159489 CAGCACACA-AGGGGGGACTGGGTCAATCCCCAGCTTGTGCATTCTGCCTTTTCGATCGGCTGAG
65 CAGCACGCAGA-GGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCAGCTGAG
* *
13159553 CACCCGCACGCTCATTTTGTGGGTTGGCTTAG
129 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
13159585 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
13159614 TTTGGAGTTC
Statistics
Matches: 273, Mismatches: 62, Indels: 22
0.76 0.17 0.06
Matches are distributed among these distances:
157 4 0.01
158 57 0.21
159 204 0.75
160 8 0.03
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCGAGGGTTACGACAGCAGGATCGGC
AGCACGCAGAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCAGCTGAGCG
CCCGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:13159439 original size:678 final size:682
Alignment explanation
Indices: 13158133--13159613 Score: 1824
Period size: 678 Copynumber: 2.2 Consensus size: 682
13158123 CGACAGTACG
* *
13158133 CAGGGGTGGA-TCGGATCGAT-CCTCAGCTTGTGCA-TCTGCCTCTCCGGCTGGCTAAGCG-CTC
1 CAGGGGTGGACT-GGGTCGATCCCT-AGCTTGTGCATTCTGCCTCTCCGTC-GGCTAAGCGCCT-
* * *
13158194 GCACGCTAGTTTCATGGGTTGGCTTAGGCATACGTAGTTCATTCCATGTCTAAGCCCCAGTCGGA
62 GCACGCTAGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGTCGGA
* *
13158259 CCGAGGGTTGTGGCAGCAGGATCGATAGCGAGATCGACAGGACGTAGAGGGGAACCGGACTGATC
127 CCGAGGGTTGTGGCAGCAAGATCGATAGCGAGATCGACAGCACGTAGAGGGGAACCGGACTGATC
* *** ** * **
13158324 CCTGACTTACGTATTATGCCTCTTTGATTGGCCTTTCCGACCTACTACGTGCCCGCAAGCTCGTT
192 CCTGACTTACGCATTATGCCTCTCCAACCGACCTTTCCGACCTACTACGCACCCGCAAGCTCGTT
*
13158389 TCATGGGTTGACTTAGGCAGACGGAGTTCATCCCCAGTCTAAGCATATAGAGTTAATTCCCAGTC
257 TCATGGGTTGACTTAGGCAGACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTAATTCCCAGTC
* * * * * *
13158454 TAAGATCGGATCGAATCGAGGGTTGCGGTAGCAGGATCAGTAACATACAGGGGGGACTGAGCCAA
322 TAAGATCAGACCGAACCGAGGGTTGCGGTAGCAGGATCAGCAACACACAGGGGGGACCGAGCCAA
* * * * *
13158519 TCCCCAGCTTACGCATTCTGTCTCTCCGTCCGACTGGGCGCTCGCACGCCCGTTTCGTGGGTTGG
387 TCCCCAGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCATTTCGTGGGTTGG
* * *
13158584 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAAACCAAGGGTTGTGGCAGCGGGAC
452 CTTAGGCATAGGGAGTTCATTACATGTCTAAGCCCCAGTCAAACCAAGGGTTATGGCAGCGGAAC
* * * * * * *
13158649 CGGCAGCATGCAGAGGAGGATCGGGCTGATCCTTGGCTTGCATATTCTACCTCTCCGGTCGGCTG
517 CGGCAGCACGCAGAGGAGGACCGGGCTGATCCCTGGCTTGCACATTATACCTCTCCGGTCAGCTC
* * * * * ** ** *
13158714 AGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCC
582 AGCGCCCGCACGCCCATTTCATGGATTGACTTAGACATACAGAGTTCATTCCCAGTCTAAG-ACC
* * *
13158779 AG-CTAGACCGAGGGTTACGACAGC-GA-GAC-C-GA
646 AGACCAAACCGAGGGTTACGACAGCAGACGACACACA
*
13158811 CAGGGGTGGACTGGGTCGATCCCTAGCTTATGCATTCTGCCTCTCCAGTCGGCTAAGCGCCTGCA
1 CAGGGGTGGACTGGGTCGATCCCTAGCTTGTGCATTCTGCCTCTCC-GTCGGCTAAGCGCCTGCA
*
13158876 CGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAG-CTGGACC
65 CGCTAGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGTC-GGACC
* * * *
13158940 GA-GGTTGTGGCAGCAAGATCGATAGCGGGATCGGCAGCACGTAGAGGGGAACTGGGCTGATCCC
129 GAGGGTTGTGGCAGCAAGATCGATAGCGAGATCGACAGCACGTAGAGGGGAACCGGACTGATCCC
* * * * *
13159004 TTACTTGCGCATTATGCCTCTCCAACCGACCTTTCTGGCCTACTGA-GCACCCGCATGCTCGTTT
194 TGACTTACGCATTATGCCTCTCCAACCGACCTTTCCGACCTACT-ACGCACCCGCAAGCTCGTTT
* * * *
13159068 CGTGGGTTGACTTAGGCATACGGAGTTCATCGCCAGTCTAAGCATACAGAGTTCATTCCCAGTCT
258 CATGGGTTGACTTAGGCAGACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTAATTCCCAGTCT
** * ** * **
13159133 AAGATCAGACCGAACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGTAGGGGGGACCGGGCGGAT
323 AAGATCAGACCGAACCGAGGGTTGCGGTAGCAGGATCAGCAACACACAGGGGGGACCGAGCCAAT
** *
13159198 CCCTGGCTTACGTATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCATTTCGTGGGTTGGC
388 CCCCAGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCATTTCGTGGGTTGGC
* * *
13159263 TTAGGCATAGGGAGTTCATTACATGTCTAAGCCCCAGTCAGACCGAGGGTTATGGCAGCGGAATC
453 TTAGGCATAGGGAGTTCATTACATGTCTAAGCCCCAGTCAAACCAAGGGTTATGGCAGCGGAACC
* * *
13159328 GGCAGCACGCAGAAGG-GGACCGGG-TCGATCCCTGGCTTGCGCATTATGCCTCTTCGGTCAGCT
518 GGCAGCACGCAG-AGGAGGACCGGGCT-GATCCCTGGCTTGCACATTATACCTCTCCGGTCAGCT
* * * * *
13159391 CAGCGCCCGCACGCTCGTTTCATGGATTGACTTATACATACAGAGTTCATTCCCAGTCTCAGATC
581 CAGCGCCCGCACGCCCATTTCATGGATTGACTTAGACATACAGAGTTCATTCCCAGTCTAAGACC
* *
13159456 AGACCAAACTGAGGGTTGCGACAGCAGGATCGACAGCACA
646 AGACCAAACCGAGGGTTACGACAGCA-GA-CGACA-CACA
* * * * * * *
13159496 CAAGGGG-GGACTGGGTCAATCCCCAGCTTGTGCATTCTGCCTTTTCGATCGGCTGAGCACCCGC
1 C-AGGGGTGGACTGGGTCGATCCCTAGCTTGTGCATTCTGCCTCTCCG-TCGGCTAAGCGCCTGC
*
13159560 ACGCTCA-TTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
64 ACGCT-AGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13159614 TTTGGAGTTC
Statistics
Matches: 683, Mismatches: 100, Indels: 33
0.84 0.12 0.04
Matches are distributed among these distances:
677 4 0.01
678 472 0.69
679 91 0.13
680 6 0.01
682 3 0.00
684 2 0.00
685 100 0.15
686 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (682 bp):
CAGGGGTGGACTGGGTCGATCCCTAGCTTGTGCATTCTGCCTCTCCGTCGGCTAAGCGCCTGCAC
GCTAGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGTCGGACCGA
GGGTTGTGGCAGCAAGATCGATAGCGAGATCGACAGCACGTAGAGGGGAACCGGACTGATCCCTG
ACTTACGCATTATGCCTCTCCAACCGACCTTTCCGACCTACTACGCACCCGCAAGCTCGTTTCAT
GGGTTGACTTAGGCAGACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTAATTCCCAGTCTAAG
ATCAGACCGAACCGAGGGTTGCGGTAGCAGGATCAGCAACACACAGGGGGGACCGAGCCAATCCC
CAGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTA
GGCATAGGGAGTTCATTACATGTCTAAGCCCCAGTCAAACCAAGGGTTATGGCAGCGGAACCGGC
AGCACGCAGAGGAGGACCGGGCTGATCCCTGGCTTGCACATTATACCTCTCCGGTCAGCTCAGCG
CCCGCACGCCCATTTCATGGATTGACTTAGACATACAGAGTTCATTCCCAGTCTAAGACCAGACC
AAACCGAGGGTTACGACAGCAGACGACACACA
Found at i:13159643 original size:26 final size:26
Alignment explanation
Indices: 13159591--13159641 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13159581 TTAGGCATAC
13159591 GGAGTTCATTCCATGTCTAAGCATTT
1 GGAGTTCATTCCATGTCTAAGCATTT
13159617 GGAGTTCATTCCCA-GTCTAAG-ATTT
1 GGAGTTCATT-CCATGTCTAAGCATTT
13159642 TGAGCCACGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 4 0.17
26 17 0.71
27 3 0.12
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (26 bp):
GGAGTTCATTCCATGTCTAAGCATTT
Found at i:13166549 original size:26 final size:26
Alignment explanation
Indices: 13166513--13166565 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13166503 GTTGACTTAG
13166513 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13166539 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13166565 G
1 G
13166566 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13167080 original size:157 final size:158
Alignment explanation
Indices: 13166539--13167355 Score: 661
Period size: 159 Copynumber: 5.2 Consensus size: 158
13166529 CCCAGTCTAA
* ** * * * * * **
13166539 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGGTAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGA-TGGACTGAGGGTTGCGGCAGCAGGACCGACA
** * * * * * *
13166604 GCACGCAG-GGTGGATCGGGCTGATCCCTGGCTTGCGCATTTTGCCTCTCCGATCGATTGAGCAC
65 GCACATAGAGGGGGATCGGGCCGATCTCTGGCTTGCGCATTATGCCTCTCCGATCGACTGAGCGC
* * * *
13166668 CTGCATGCCCATTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * * *
13166697 GCATAGGGAGTTCATT-TGATGTCTCAGCTCCAGTTGGACTGAGGGTTGTGGCAGC-GAGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGATGGACTGAGGGTTGCGGCAGCAG-GACCGA
* * * * * * * *
13166760 CAGCACGTAGAGGGGGATCGGGCCGATCTCTGGCTTACACATTATGCCTCTTCGGTCGGCTCAGT
63 CAGCACATAGAGGGGGATCGGGCCGATCTCTGGCTTGCGCATTATGCCTCTCCGATCGACTGAGC
* ** **
13166825 GCCCGCACGCTCGTTTCGTGGGTTCTCTTTT
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * * *
13166856 GCCTACGGAGTTCATTCCCAGTCTAAGATCAGATTGAATCGATGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGATGGACT-GAGGGTTGCGGCAGCAGGACCGACA
* * * * *
13166921 GCACAT--AGGGGGAGT-GGCCCGATC-CTCAGCTTGCGCATTCTGCCTCTCCGACCGATTGAGC
65 GCACATAGAGGGGGA-TCGGGCCGATCTCT-GGCTTGCGCATTATGCCTCTCCGATCGACTGAGC
* * *
13166982 ACCCGCACGCCCATTTCATGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
13167013 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCTGGACTGAGGGTTGTGGCAGC-GAGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGATGGACTGAGGGTTGCGGCAGCAG-GACCGA
* * * * * * * *
13167076 CAGCACGTAGAGGGGGATCGGGTCGATCTCTGGCTTACGCATTATGCCTCTTCGGTCGGCTCAGT
63 CAGCACATAGAGGGGGATCGGGCCGATCTCTGGCTTGCGCATTATGCCTCTCCGATCGACTGAGC
* **
13167141 GCCCGCACGCTCGTTTCATGGGTTGACTTTT
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * *
13167172 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGATGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGAT-GGACTGAGGGTTGCGGCAGCAGGACCGACA
* * *
13167237 GCACAT--AGGGGGA-CTGGGCCGATCCCTGACTTGCG-ATTCTGCCTCTCCGATCGACTGAGCG
65 GCACATAGAGGGGGATC-GGGCCGATCTCTGGCTTGCGCATTATGCCTCTCCGATCGACTGAGCG
* * *
13167298 CCCGCACACTCGTTTCGTGGATTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
13167328 GCATACGGAGTTCATTCCCAGTCTAAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGA
13167356 GTTTGAGCCA
Statistics
Matches: 505, Mismatches: 134, Indels: 42
0.74 0.20 0.06
Matches are distributed among these distances:
156 79 0.16
157 130 0.26
158 68 0.13
159 220 0.44
160 8 0.02
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGATGGACTGAGGGTTGCGGCAGCAGGACCGACAG
CACATAGAGGGGGATCGGGCCGATCTCTGGCTTGCGCATTATGCCTCTCCGATCGACTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:13167121 original size:316 final size:314
Alignment explanation
Indices: 13166539--13167354 Score: 1197
Period size: 316 Copynumber: 2.6 Consensus size: 314
13166529 CCCAGTCTAA
* * **
13166539 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAGACCGAAGGTTACGGTAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGA-ACCGATGGTTACGGTAGCAGGATCGAC
** * * *
13166603 AGCACGCAGGGTGGATCGGGCTGATCCCTGGCTTGCGCATTTTGCCTCTCCGATCGATTGAGCAC
65 AGCACATAGGG-GGAT-GGGCCGATCCC-AGCTTGCGCATTCTGCCTCTCCGATCGATTGAGCAC
* * ** * * *
13166668 CTGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTTGATGTCTCAGCTCCAGTTG
127 CCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTG
*
13166733 GACTGAGGGTTGTGGCAGCGAGACCGGCAGCACGTAGAGGGGGATCGGGCCGATCTCTGGCTTAC
192 GACTGAGGGTTGTGGCAGCGAGACCGACAGCACGTAGAGGGGGATCGGGCCGATCTCTGGCTTAC
* *
13166798 ACATTATGCCTCTTCGGTCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTCTCTTTT
257 ACATTATGCCTCTTCGGTCGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTCACTTTT
* * *
13166856 GCCTACGGAGTTCATTCCCAGTCTAAGATCAGATTGAATCGATGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGATGGTTACGGTAGCAGGATCGACA
* *
13166921 GCACATAGGGGGAGTGGCCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGATTGAGCACCC
66 GCACATAGGGGGA-TGGGCCGATCC-CAGCTTGCGCATTCTGCCTCTCCGATCGATTGAGCACCC
13166986 GCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGA
129 GCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGA
* *
13167051 CTGAGGGTTGTGGCAGCGAGACCGACAGCACGTAGAGGGGGATCGGGTCGATCTCTGGCTTACGC
194 CTGAGGGTTGTGGCAGCGAGACCGACAGCACGTAGAGGGGGATCGGGCCGATCTCTGGCTTACAC
*
13167116 ATTATGCCTCTTCGGTCGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTTT
259 ATTATGCCTCTTCGGTCGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTCACTTTT
*
13167172 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGATGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGATGGTTACGGTAGCAGGATCGACA
* * *
13167237 GCACATAGGGGGACTGGGCCGATCCCTGACTTGCG-ATTCTGCCTCTCCGATCGACTGAGCGCCC
66 GCACATAGGGGGA-TGGGCCGATCCCAG-CTTGCGCATTCTGCCTCTCCGATCGATTGAGCACCC
* * * * * *
13167301 GCACACTCGTTTCGTGGATTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
129 GCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG
13167355 AGTTTGAGCC
Statistics
Matches: 451, Mismatches: 43, Indels: 12
0.89 0.08 0.02
Matches are distributed among these distances:
315 72 0.16
316 312 0.69
317 66 0.15
318 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (314 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGATGGTTACGGTAGCAGGATCGACA
GCACATAGGGGGATGGGCCGATCCCAGCTTGCGCATTCTGCCTCTCCGATCGATTGAGCACCCGC
ACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACT
GAGGGTTGTGGCAGCGAGACCGACAGCACGTAGAGGGGGATCGGGCCGATCTCTGGCTTACACAT
TATGCCTCTTCGGTCGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTCACTTTT
Found at i:13168060 original size:26 final size:26
Alignment explanation
Indices: 13168024--13168076 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13168014 GTTGACTTAG
13168024 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
13168050 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
13168076 G
1 G
13168077 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:13169016 original size:158 final size:159
Alignment explanation
Indices: 13168654--13169036 Score: 412
Period size: 158 Copynumber: 2.4 Consensus size: 159
13168644 TACAGCCCTA
* * *
13168654 GCTGAGCGCCCGCACCCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
* * * * * * *
13168719 CCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGTAGAGGGGGACCAGGTCGATCC
66 CCCCAGTCGAACCGAGGGTTGCGGCAACAGGACTGACAGCACGCAGAGGGGGACCAGGCCGATCC
** * * *
13168784 CCGACTTACGTATTATGCCTCTTCGGCTG
131 CCGACTTACACATTATGCCTCTCCGACCG
* * * * ** *
13168813 GCTCAGCACCCGCACGCTCATTTTGTGGGTTAACTTATGCATATGGAGTTCATTCCCA-GTCTAA
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATT-CCATGTCTAA
** * * * * * *
13168877 G-ATCGGATCGAACCGAGGGTTGCGGCAATAGGATTGATAGCACGCA-AGGGGGACCGGGCCGTT
65 GCCCCAG-TCGAACCGAGGGTTGCGGCAACAGGACTGACAGCACGCAGAGGGGGACCAGGCCGAT
* *
13168940 CCCCGACTTGCACATTCTGCCTCTCCGACCG
129 CCCCGACTTACACATTATGCCTCTCCGACCG
* * *
13168971 GCTGAGCGCCTGTACGCTCGTTTCGTGGGTTGGCTTAGGCTTATGGAGTTCATTCCATGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
13169036 C
66 C
13169037 ATACGGAGTT
Statistics
Matches: 178, Mismatches: 42, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
157 3 0.02
158 91 0.51
159 81 0.46
160 3 0.02
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (159 bp):
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
CCCCAGTCGAACCGAGGGTTGCGGCAACAGGACTGACAGCACGCAGAGGGGGACCAGGCCGATCC
CCGACTTACACATTATGCCTCTCCGACCG
Found at i:13170018 original size:158 final size:157
Alignment explanation
Indices: 13169527--13170020 Score: 435
Period size: 159 Copynumber: 3.1 Consensus size: 157
13169517 TCTAAGCATT
* * * * *
13169527 GGAGTT-ATTCC-TAGTTTAAGATCAGACCAGATCGAGGGTTACGACAGCAGCATCGACAACACG
1 GGAGTTCATTCCAT-GTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACG
* * * * * * * *
13169590 CAA-GGGGATCGGGTCGATCCATGGCTTGCGCATTTTGCCTCTCCGGCCGACTGAGCGCCCGTAA
65 -AAGGGGGACCGGGCCGATCCACGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCCGCAC
* * *
13169654 GCCCGTTTCG-TGAGTTTGCTTAGGCATAG
129 GCTCGTTTCGTTG-GTTGGCTTAGGCATAC
* ** * ** * * *
13169683 GGAGTTTATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAACGGGATCGGCAGCATG
1 GGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCA--
* * * * * * *
13169747 CAAAGGGGGACCGGGCCGATCCTCGACTTGTGCATTATGCGTCGT-CGGCCGGCTTAGCACCCCC
63 CGAAGGGGGACCGGGCCGATCCACGGCTTGCGCATTATGCCTC-TCCGGCCGGCTGAGCACCCGC
* * *
13169811 ACGCTCGTTTCGTGGGTTGACTTATGCATAC
127 ACGCTCGTTTCGTTGGTTGGCTTAGGCATAC
* * *
13169842 GAAATTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACG
1 GGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACG
* * * * ** *
13169906 TAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGAACCCGCAC
65 -AAGGGGGACCGGGCCGATCCACGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCCGCAC
13169971 GCTCGTTTCGTTGGTTGGCTTAGGCATAC
129 GCTCGTTTCGTTGGTTGGCTTAGGCATAC
* *
13170000 GGAGTCCATTACATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
13170021 CATACGGAGT
Statistics
Matches: 259, Mismatches: 66, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
156 6 0.02
157 40 0.15
158 99 0.38
159 109 0.42
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGA
AGGGGGACCGGGCCGATCCACGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCCGCACGC
TCGTTTCGTTGGTTGGCTTAGGCATAC
Found at i:13171171 original size:158 final size:157
Alignment explanation
Indices: 13170762--13171210 Score: 427
Period size: 158 Copynumber: 2.8 Consensus size: 157
13170752 CCTCCATCTA
* * * * * *
13170762 AGCATACGAAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCAGGATCAGC
1 AGCATACGGAGTTCATTCCAAGTCTAAGACCAGACCGGACCGAGGGTTACGGTAGCAGGATCAAC
* * * * * * *
13170827 AGCACGCAAGAGGGA-TCGGGCTGATCCTCGGCTTGCACATTCTGCCTCTTCGATCGGCTGAGCT
66 AGCACGCGAGGGGGACT-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTCAGCG
* * *
13170891 CCCGCATGCCCGTTTCGTGGGTTGGCTT
130 CCCGCAGGCCCATTTCGTGGGTTGACTT
* * * * * ** * * *
13170919 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCAAGGGTTGTGGCAGCGGGATCG
1 A-GCATACGGAGTTCATTCCAAGTCTAAG-ACCAGACCGGACCGAGGGTTACGGTAGCAGGATCA
* * * * * *
13170983 ACAGCACGCAGAGGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTTTTCGGTCGGCTCAG
64 ACAGCACGC-GAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTCAG
* *
13171048 CGCCCGCAGGCTCATTTTGTGGGTTGACTT
128 CGCCCGCAGGCCCATTTCGTGGGTTGACTT
** *
13171078 AGCATACGGAGTTCATTCCCCGTCTAAGACCAGACCGGATCGAGGGTTACGGTAGTC-GGATCAA
1 AGCATACGGAGTTCATTCCAAGTCTAAGACCAGACCGGACCGAGGGTTACGGTAG-CAGGATCAA
* * * * * * *
13171142 CAGCACGCGGGGGGAGACTGGGCCAATCCCTGGCTTACGCATTCTGCCTCTCCGATCGGTTGAGC
65 CAGCACGCGAGGGG-GACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTCAGC
13171207 GCCC
129 GCCC
13171211 ATACGTTCGG
Statistics
Matches: 227, Mismatches: 58, Indels: 13
0.76 0.19 0.04
Matches are distributed among these distances:
157 10 0.04
158 147 0.65
159 70 0.31
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
AGCATACGGAGTTCATTCCAAGTCTAAGACCAGACCGGACCGAGGGTTACGGTAGCAGGATCAAC
AGCACGCGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTCAGCGC
CCGCAGGCCCATTTCGTGGGTTGACTT
Found at i:13171622 original size:26 final size:26
Alignment explanation
Indices: 13171593--13171645 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13171583 GTTGACTTAG
*
13171593 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13171619 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13171645 G
1 G
13171646 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13174989 original size:26 final size:26
Alignment explanation
Indices: 13174952--13175004 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13174942 CTTGACTTAG
*
13174952 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13174978 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13175004 G
1 G
13175005 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13175279 original size:159 final size:158
Alignment explanation
Indices: 13175116--13175481 Score: 405
Period size: 158 Copynumber: 2.3 Consensus size: 158
13175106 CCCGCACACC
* * *
13175116 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACTGAAG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGCACCAGATCGAACTGAAG
* * ** * * *
13175180 GTTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGATCGAGTC-GATCCCTGGCTTGCGTATTAT
65 GTTGCGACAGCAGGACCGACAGCACGCAGA-GGGGA-CGAGGCTGATCCCTGGCTTGCGCATCAT
* *
13175244 GCCTCTTCGGTCAGCTCAGCGCCCACACGCT
128 GCCTCTTCGGTCAACTCAACGCCCACACGCT
* * *** * **
13175275 CATTTCATGGGTTGACTTTTACATACGGAGTTCATTCCCAATCTAAG-ATTAGATCGAACTGAAG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGCACCAGATCGAACTGAAG
* * * *
13175339 GTTGCGACAGCAGGATCGATAGCACGCAGAGGGGACTAGGCTGATCCCTGGCTTGCGCATCCTGC
65 GTTGCGACAGCAGGACCGACAGCACGCAGAGGGGACGAGGCTGATCCCTGGCTTGCGCATCATGC
* * *
13175404 CTCTTTGGTCAACTGAACGCCCGCACGCT
130 CTCTTCGGTCAACTCAACGCCCACACGCT
* *
13175433 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCAGTCTAAGCA
13175482 TACAGAGTTC
Statistics
Matches: 167, Mismatches: 35, Indels: 10
0.79 0.17 0.05
Matches are distributed among these distances:
157 4 0.02
158 89 0.53
159 71 0.43
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.25
Consensus pattern (158 bp):
CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCACCAGATCGAACTGAAGG
TTGCGACAGCAGGACCGACAGCACGCAGAGGGGACGAGGCTGATCCCTGGCTTGCGCATCATGCC
TCTTCGGTCAACTCAACGCCCACACGCT
Found at i:13175489 original size:26 final size:26
Alignment explanation
Indices: 13175453--13175505 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13175443 GTTGGCTTAG
*
13175453 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13175479 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13175505 G
1 G
13175506 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13176224 original size:159 final size:157
Alignment explanation
Indices: 13176053--13176343 Score: 363
Period size: 158 Copynumber: 1.8 Consensus size: 157
13176043 GGGTTGTGGC
*
13176053 AGCAGGACCGACAACACGC-AGACGTGGACCAGGCCGATCCTCGGCTTACGCATTATGCCTCTTC
1 AGCAGGACCGACAACACGCAAG-CGGGGACCAGGCCGATCC-CGGCTTACGCATTATGCCTC-TC
* * * *
13176117 AGTCGC-CTCAGTGCCCAAACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCA-
63 AGAC-CACTAAGCGCCCAAACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TTCCAT
13176180 GTCTAATATCGGATCGAACCGAGGGTTACAGT
126 GTCTAATATCGGATCGAACCGAGGGTTACAGT
* * * ** * *
13176212 AGCAGGATCGACAGCACGCAAGGGGGGACTGGGCCGATCCCGGCTTACGCATTCTGCCTCTCCGA
1 AGCAGGACCGACAACACGCAAGCGGGGACCAGGCCGATCCCGGCTTACGCATTATGCCTCTCAGA
** * *
13176277 CCAGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
66 CCA-CTAAGCGCCCAAACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCT
13176342 AA
130 AA
13176344 GCATACGGAG
Statistics
Matches: 112, Mismatches: 16, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
156 1 0.01
157 9 0.08
158 69 0.62
159 31 0.28
160 2 0.02
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (157 bp):
AGCAGGACCGACAACACGCAAGCGGGGACCAGGCCGATCCCGGCTTACGCATTATGCCTCTCAGA
CCACTAAGCGCCCAAACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTA
ATATCGGATCGAACCGAGGGTTACAGT
Found at i:13176348 original size:26 final size:26
Alignment explanation
Indices: 13176318--13176370 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13176308 GTTGGCTTAG
13176318 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13176344 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13176370 G
1 G
13176371 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13176543 original size:26 final size:26
Alignment explanation
Indices: 13176514--13176566 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13176504 GTTGACTTAG
13176514 GCATACAGAGTTC-ATCCCCAGTCTAA
1 GCATACAGAGTTCAAT-CCCAGTCTAA
*
13176540 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
13176566 G
1 G
13176567 ATCAAACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:13176549 original size:196 final size:196
Alignment explanation
Indices: 13176215--13176570 Score: 511
Period size: 196 Copynumber: 1.8 Consensus size: 196
13176205 TTACAGTAGC
* * * *
13176215 AGGATCGACAGCACGCAAGGGGGGACTGGGCCGATCCCGGCTTACGCATTCTGCCTCTCCGACCA
1 AGGATCGACAGCACACAAGGGGGGACCGAGCCGATCCCGGCTTACGCATTCTGCCTCTCAGACCA
* * *
13176280 GCTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 GCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAG
*
13176345 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGCTTACGGTAGCAGGACCAGCAG
131 CATACGGAGTTCAATCCCAGTCTAAGATCAGACCGGACCGAGGCTTACGGTAGCAGGACCAGCAG
13176410 T
196 T
* * *
13176411 AGGATCGATAGCACAC-AGGGGGGACCGAGCCGATCCTCGGCTTACGCATTCTGCCTTTCAG-GC
1 AGGATCGACAGCACACAAGGGGGGACCGAGCCGATCC-CGGCTTACGCATTCTGCCTCTCAGACC
* * * * **
13176474 TGACTGAGTGCCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCT
65 AG-CTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT-CCCATGTCT
13176538 AAGCATACGGAGTTCAATCCCAGTCTAAGATCA
128 AAGCATACGGAGTTCAATCCCAGTCTAAGATCA
13176571 AACTAGATCG
Statistics
Matches: 140, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
195 20 0.14
196 117 0.84
197 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (196 bp):
AGGATCGACAGCACACAAGGGGGGACCGAGCCGATCCCGGCTTACGCATTCTGCCTCTCAGACCA
GCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAG
CATACGGAGTTCAATCCCAGTCTAAGATCAGACCGGACCGAGGCTTACGGTAGCAGGACCAGCAG
T
Found at i:13176750 original size:697 final size:697
Alignment explanation
Indices: 13175806--13177070 Score: 1806
Period size: 697 Copynumber: 1.8 Consensus size: 697
13175796 CTTATCTCAA
* ** * *
13175806 GGGTTGACTTAGGCATACGGAGTTCATCCGTAGTCTAAGCATACGAAGTTCATTCTCAATCTAAG
1 GGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCAATCCCAATCTAAG
** * * * *
13175871 ATCGGATCGGATCGAGGGATGCGACAGTAGGATCGGCAGCATGCAGGGGGACCGGGCTGATCCCC
66 ATCAAATCAGATCGAGGGATGCGACAGTAGGATCGGCAGCACGAAGGGGGACCGGGCCGATCCCC
* * ** *
13175936 GCCTTGCGCGTGCTACCTCTTCGGTCGACTGAGCGTCCGCACGCCCGTTTTGTGGGTTGGCATAG
131 GCCTTGCGCATGCTACCTCTCCGACCGACTGAACGTCCGCACGCCCGTTTTGTGGGTTGGCATAG
* *
13176001 GCATAGGGAGTTCATTCCAGGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAGGACCGACA
196 GCATAGGGAGTTCATTCCAGGTCTAAGCCCCAACCGAACCAAGGGTTGTGGCAGCAGGACCGACA
* * *
13176066 ACACGCAGACGTGGACCAGGCCGATCCTCGGCTTACGCATTATGCCTCTTC-AGTCGCCTCAGTG
261 ACACGCAGACGGGGACCAGGCCGATCCTCAGCTTACGCATTATGCCTCTTCGA-TCGCCTCAGCG
* * *
13176130 CCCAAACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAATATCGGATC
325 CCCAAACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTGCCAGTCTAATATCGAATC
* * * *
13176195 GAACCGAGGGTTACAGTAGCAGGATCGACAGCACGCAAGGGGGG-ACTGGGCCGAT-CCCGGCTT
390 GAACCGAGGGTTACAGCAGCAGGATCAACAGCACGC-AGGGGGGTACCGGGCCGATCCCCGACTT
* *
13176258 ACGCATTCTGCCTCTCCGACCAGCTAAGCGCCCGC-ACGCTCGTTTCATGGGTTGGCTTAGGCAT
454 ACGCATTCTGCCTCTCCGACCAGCTAAGCACCC-CTACGCTCGTTTCATGGGCTGGCTTAGGCAT
13176322 ACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
518 ACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
13176387 GCTTACGGTAGCAGGACCAGCAGTAGGATCGATAGCACACAGGGGGGACCGAGCCGATCCTCGGC
583 GCTTACGGTAGCAGGACCAGCAGTAGGATCGATAGCACACAGGGGGGACCGAGCCGATCCTCGGC
13176452 TTACGCATTCTGCCTTTCAGGCTGACTGAGTGCCCGCATGCTCGTTTTGT
648 TTACGCATTCTGCCTTTCAGGCTGACTGAGTGCCCGCATGCTCGTTTTGT
* *
13176502 GGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCAATCCCAGTCTAAG
1 GGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCAATCCCAATCTAAG
* * * **
13176567 ATCAAA-CTAGATCGAGGGTTGC-AGCAGTAGGATCGGTAGCACGTAAGGGGTATTGGGCCGATC
66 ATCAAATC-AGATCGAGGGATGCGA-CAGTAGGATCGGCAGCACG-AAGGGGGACCGGGCCGATC
* * *
13176630 CCCGACC-TGCGCATTCTGCCTCTCCGACCGGCTGAACGTCCGCACGCCCGTTTTGTGGGTTGGC
128 CCCG-CCTTGCGCATGCTACCTCTCCGACCGACTGAACGTCCGCACGCCCGTTTTGTGGGTTGGC
* * * *
13176694 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCGGGACC
192 ATAGGCATAGGGAGTTCATTCCAGGTCTAAGCCCCAACCGAACCAAGGGTTGTGGCAGCAGGACC
* * ** * *
13176759 GACAGCACGCAGAGGGGGACTGGGCCGATCCTCAGCTTACGCATTATGCCTCTTCGATCGGCTTA
257 GACAACACGCAGACGGGGACCAGGCCGATCCTCAGCTTACGCATTATGCCTCTTCGATCGCCTCA
** * *
13176824 GCGCCTGAACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTGCCAGTCTAATATCGA
322 GCGCCCAAACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTGCCAGTCTAATATCGA
* *** *
13176889 ATCGGACCGAGGGTTGTGGCAGCATGATCAACAGCACGCAGGGGGGTACCGGGCCGATCCCCGAC
387 ATCGAACCGAGGGTTACAGCAGCAGGATCAACAGCACGCAGGGGGGTACCGGGCCGATCCCCGAC
** * * ** *
13176954 TTGTGCATTTTGCCTTTCCGACTGGCTGAGCACCCCTACGCTCGTTTCATGGGCTGGCTTAGGCA
452 TTACGCATTCTGCCTCTCCGACCAGCTAAGCACCCCTACGCTCGTTTCATGGGCTGGCTTAGGCA
* *
13177019 TACGGAGTTCATTCCATGTCTAAGCTTACGTAGTTCATTCCCAGTCTAAGAT
517 TACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
13177071 TTTGAACCAC
Statistics
Matches: 493, Mismatches: 68, Indels: 14
0.86 0.12 0.02
Matches are distributed among these distances:
695 2 0.00
696 98 0.20
697 281 0.57
698 112 0.23
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (697 bp):
GGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCAATCCCAATCTAAG
ATCAAATCAGATCGAGGGATGCGACAGTAGGATCGGCAGCACGAAGGGGGACCGGGCCGATCCCC
GCCTTGCGCATGCTACCTCTCCGACCGACTGAACGTCCGCACGCCCGTTTTGTGGGTTGGCATAG
GCATAGGGAGTTCATTCCAGGTCTAAGCCCCAACCGAACCAAGGGTTGTGGCAGCAGGACCGACA
ACACGCAGACGGGGACCAGGCCGATCCTCAGCTTACGCATTATGCCTCTTCGATCGCCTCAGCGC
CCAAACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTGCCAGTCTAATATCGAATCG
AACCGAGGGTTACAGCAGCAGGATCAACAGCACGCAGGGGGGTACCGGGCCGATCCCCGACTTAC
GCATTCTGCCTCTCCGACCAGCTAAGCACCCCTACGCTCGTTTCATGGGCTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGCT
TACGGTAGCAGGACCAGCAGTAGGATCGATAGCACACAGGGGGGACCGAGCCGATCCTCGGCTTA
CGCATTCTGCCTTTCAGGCTGACTGAGTGCCCGCATGCTCGTTTTGT
Found at i:13176841 original size:159 final size:159
Alignment explanation
Indices: 13176621--13177043 Score: 417
Period size: 159 Copynumber: 2.7 Consensus size: 159
13176611 AAGGGGTATT
* * * * * * * * * * *
13176621 GGGCCGATCCCCGACCTGCGCATTCTGCCTCTCCGACCGGCTGAACGTCCGC-ACGCCCGTTTTG
1 GGGCCGATCCCAGACTTACGCATTATGCCTTTCCGACTGGCTGAGC-ACCCCAACGCTCGTTTCG
*
13176685 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGTGGC
65 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGTGGC
* * *
13176750 AGCGGGACCGACAGCACGCAGAGGGGG-ACT
130 AGCAGGACCAACAGCACGCAG-GGGGGTACC
* * **
13176780 GGGCCGATCCTCAG-CTTACGCATTATGCCTCTT-CGA-TCGGCTTAGCGCCTGAACGCTCGTTT
1 GGGCCGATCC-CAGACTTACGCATTATGCCT-TTCCGACT-GGCTGAGCACCCCAACGCTCGTTT
* * * *** * * *
13176842 CGTGGGTTGACTTATGCATACGAAGTTCATTGCCA-GTCTAATATCGAATCGGACCGAGGGTTGT
63 CGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGAACCGAGGGTTGT
* *
13176906 GGCAGCATGATCAACAGCACGCAGGGGGGTACC
127 GGCAGCAGGACCAACAGCACGCAGGGGGGTACC
* ** * * *
13176939 GGGCCGATCCCCGACTTGTGCATTTTGCCTTTCCGACTGGCTGAGCACCCCTACGCTCGTTTCAT
1 GGGCCGATCCCAGACTTACGCATTATGCCTTTCCGACTGGCTGAGCACCCCAACGCTCGTTTCGT
*
13177004 GGGCTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13177044 TTACGTAGTT
Statistics
Matches: 210, Mismatches: 44, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
158 14 0.07
159 189 0.90
160 7 0.03
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (159 bp):
GGGCCGATCCCAGACTTACGCATTATGCCTTTCCGACTGGCTGAGCACCCCAACGCTCGTTTCGT
GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCA
GCAGGACCAACAGCACGCAGGGGGGTACC
Found at i:13177053 original size:26 final size:26
Alignment explanation
Indices: 13177019--13177068 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
13177009 GGCTTAGGCA
13177019 TACGGAGTTCATT-CCATGTCTAAGCT
1 TACGGAGTTCATTCCCA-GTCTAAGCT
*
13177045 TACGTAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
13177069 ATTTTGAACC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:13177774 original size:26 final size:26
Alignment explanation
Indices: 13177738--13177790 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13177728 GTTGACTTAG
13177738 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13177764 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13177790 G
1 G
13177791 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13178589 original size:26 final size:26
Alignment explanation
Indices: 13178559--13178611 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13178549 GTTAACTTAG
*
13178559 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13178585 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13178611 G
1 G
13178612 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13179068 original size:158 final size:158
Alignment explanation
Indices: 13178585--13179074 Score: 454
Period size: 158 Copynumber: 3.1 Consensus size: 158
13178575 CCCAGTCTAA
* * * *****
13178585 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGATCAAGGGTTACAATAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCAGGATTGACA
* * ** * * * *
13178650 GCACGTAAGGGGG-CCCGTTCGATCTTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAACGCC
66 GCACGTAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCGCC
*
13178714 CGTACGCCCGTTTTGT-GGTTGGCTTAG
131 CGTACGCTCGTTTTGTGGGTTGGCTTAG
* ** * * **
13178741 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGATCGAA-GGTTGTGGCAGCAGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGA-CCAAGGGTTGTGGCAGCAGGATTG
** * * * * * * * *
13178803 GTAGCACGCAGAAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTTTTCGATCGTCTCAG
63 ACAGCACGTAG-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAG
* * * ** *
13178868 CGCTCGTATGCTCGTTTCT-AGGGTTAACTTAT
127 CGCCCGTACGCTCGTTT-TGTGGGTTGGCTTAG
** * *
13178900 GCATA-GGAGTTCATTCCCAGTCTAAGATTGGATCGGACCAAGGGTTGTGGCAGTAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCAGGATTGACA
* *
13178964 GCACGTAGGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTTCGGTCGACTGAGTGCC
66 GCACGTAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCGCC
* *
13179029 CGTACACTCATTTTGTGGGTTGGCTTAG
131 CGTACGCTCGTTTTGTGGGTTGGCTTAG
13179057 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
13179075 ATGCCTAAGC
Statistics
Matches: 253, Mismatches: 69, Indels: 22
0.74 0.20 0.06
Matches are distributed among these distances:
155 2 0.01
156 45 0.18
157 84 0.33
158 105 0.42
159 17 0.07
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCAGGATTGACA
GCACGTAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCGCC
CGTACGCTCGTTTTGTGGGTTGGCTTAG
Found at i:13179209 original size:11 final size:11
Alignment explanation
Indices: 13179181--13179211 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
13179171 CGGGGCACCG
*
13179181 TCGTCGAAGCA
1 TCGTCGGAGCA
13179192 TCGTCGGAGCA
1 TCGTCGGAGCA
13179203 TCGTCGGAG
1 TCGTCGGAG
13179212 AGCCTAACCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.26, G:0.35, T:0.19
Consensus pattern (11 bp):
TCGTCGGAGCA
Found at i:13180039 original size:184 final size:183
Alignment explanation
Indices: 13179730--13180062 Score: 463
Period size: 184 Copynumber: 1.8 Consensus size: 183
13179720 TACCACTTAT
* * * ** *
13179730 TCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTTGGCTGAGCGTCCGCACGCTCATTTCGTGGG
1 TCGATCCCCGGCTTGCACATCCTGCCTCTCTGGTCGGCTAAGCACCCGCACGCTCATTTCGTAGG
* * * *
13179795 TTGACTTAGGCATACGGAGTTCACTCCATGTCTAAGCATACCGAGTTTATTCCCAGTCTAAGATC
66 TTGACTTAGGCATACGAAGTTCACCCCATGTCTAAGCATACCGAGTTCATGCCCAGTCTAAGATC
13179860 AAACCAGACCAAGGGTTGCGGCAGTAGGATCGACAGCATGCAGAGGGGACCGGC
131 -AACCAGACCAAGGGTTGCGGCAGTAGGATCGACAGCATGCAGAGGGGACCGGC
* * *
13179914 TCGATCCTCGGCTTGCACATTCTGCCT-TTTCGGTCGGCTAAGCACCCGCACGCTCATTTCGTAG
1 TCGATCCCCGGCTTGCACATCCTGCCTCTCT-GGTCGGCTAAGCACCCGCACGCTCATTTCGTAG
* * * *
13179978 GTTGACTTAGGCATACGAAGTTTATCCCCA-GTTTAAGCATACGGAGTTCATGCCTAGTCTAAGA
65 GTTGACTTAGGCATACGAAGTTCA-CCCCATGTCTAAGCATACCGAGTTCATGCCCAGTCTAAGA
*
13180042 TCAACCAGACCGAGGGTTGCG
129 TCAACCAGACCAAGGGTTGCG
13180063 ACTGCAAGAT
Statistics
Matches: 129, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
183 20 0.16
184 105 0.81
185 4 0.03
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.25
Consensus pattern (183 bp):
TCGATCCCCGGCTTGCACATCCTGCCTCTCTGGTCGGCTAAGCACCCGCACGCTCATTTCGTAGG
TTGACTTAGGCATACGAAGTTCACCCCATGTCTAAGCATACCGAGTTCATGCCCAGTCTAAGATC
AACCAGACCAAGGGTTGCGGCAGTAGGATCGACAGCATGCAGAGGGGACCGGC
Found at i:13180040 original size:26 final size:26
Alignment explanation
Indices: 13179988--13180040 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
13179978 GTTGACTTAG
* *
13179988 GCATACGAAGTTTATCCCCAGTTTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
13180014 GCATACGGAGTTCATGCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13180040 G
1 G
13180041 ATCAACCAGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13180372 original size:26 final size:26
Alignment explanation
Indices: 13180325--13180375 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13180315 TGGCTCAGGC
*
13180325 ATACGGAGTTCATTTCATGTCTAAGT
1 ATACGGAGTTCATTCCATGTCTAAGT
13180351 ATACGGAGTTCATTCCCA-GTCTAAG
1 ATACGGAGTTCATT-CCATGTCTAAG
13180376 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATGTCTAAGT
Found at i:13181074 original size:26 final size:26
Alignment explanation
Indices: 13181044--13181096 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13181034 GTTGACTTAG
*
13181044 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13181070 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13181096 G
1 G
13181097 ACCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13181386 original size:159 final size:159
Alignment explanation
Indices: 13181070--13181570 Score: 397
Period size: 159 Copynumber: 3.2 Consensus size: 159
13181060 CCCAGTCTAA
* *** * * *
13181070 GCATACAGAGTTCATTCCCA-GTCTAAGA-CCAGATTGGACCGAGGGTTGCGACAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGACCCA-ACCAGACTGAGGGTTGCGGCAGCAGGATCGA
* * * * * * * * * * * * *
13181133 CAGCACGCACG--GGGGACCGGGCCGATCCCCAGCTTATGCATTCTACCTCTTCGGTCGACTGAG
64 CAGCATGCA-GAAGGGGATCGAGCCAATCCTCAGCTTGTGCATTATGCCTCTCCAGCCGACTCAA
*** * *
13181196 CGCCCGTGTGCCCGTTTCATGGGTTGGCTTAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * *
13181228 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGATGGTTGTGGCAGCGGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGACCCAACCAGACTGAGGGTTGCGGCAGCAGGATCGACA
* * * *
13181293 GC-TCGCAGAGGGGGATCGAGCCAATCC-CTGACTTGTGCATTATGCCTTTTC-GACCGACTCAA
66 GCAT-GCAGAAGGGGATCGAGCCAATCCTCAG-CTTGTGCATTATGCCTCTCCAG-CCGACTCAA
* * * *
13181355 TGCCTGTACGCTCGTTTCGTGGGTTGACTTAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
13181387 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAATCAGACTGGGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCCAACCAGACTGAGGGTTGCGGCAGCAGGATCGAC
* * ** * * * *
13181451 AGCATGCAGAAGGGGATCGGGTCGGTCCTCAGCTTGTGCATTCTGCCTCTCCAGCCGGCTGAGCG
65 AGCATGCAGAAGGGGATCGAGCCAATCCTCAGCTTGTGCATTATGCCTCTCCAGCCGACTCAACG
13181516 CCCGCACGCTCGTTTCGTGGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCGT-GGGTTGGCTTAG
13181547 GCATACGGAGTTCATTCCATGTCT
1 GCATACGGAGTTCATTCCATGTCT
13181571 TAGCATACGG
Statistics
Matches: 271, Mismatches: 59, Indels: 24
0.77 0.17 0.07
Matches are distributed among these distances:
157 4 0.01
158 53 0.20
159 176 0.65
160 38 0.14
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCCAACCAGACTGAGGGTTGCGGCAGCAGGATCGACA
GCATGCAGAAGGGGATCGAGCCAATCCTCAGCTTGTGCATTATGCCTCTCCAGCCGACTCAACGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13182207 original size:26 final size:26
Alignment explanation
Indices: 13182171--13182223 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13182161 GTTGACTTAG
13182171 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
* *
13182197 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
13182223 G
1 G
13182224 ATTGGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:13183086 original size:26 final size:26
Alignment explanation
Indices: 13183050--13183102 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13183040 GTTAACTTAG
*
13183050 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
*
13183076 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
13183102 G
1 G
13183103 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGCCTAA
Found at i:13184286 original size:26 final size:26
Alignment explanation
Indices: 13184256--13184308 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13184246 GTTGACTTAG
13184256 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
13184282 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13184308 G
1 G
13184309 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13184598 original size:159 final size:158
Alignment explanation
Indices: 13184435--13184784 Score: 346
Period size: 158 Copynumber: 2.2 Consensus size: 158
13184425 TGTGGGTTGG
* * *
13184435 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCGGACCGA-GGGATGTGGCAACAGG
1 CTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCC-AGACCGGACC-ATGGGATGCGACAACAGG
* ** ** **
13184498 ATCGACAGCACGCAGAGGGGGACCGGGCCGGTCCCCGGTTTATGCATTATGCCTCTCCGGTCGGC
64 ATCGACAGCACGCAG-GAGGGACCGGGCCGGTCCCCGACTTACACATTATGCCTCTCCGACCGGC
* *
13184563 TCAGTGCCCAAACGCTCGTTTCATGGGTTAA
128 TAAGTGCCCAAACACTCGTTTCATGGGTTAA
* * * ** * * *
13184594 CTTAGGAATATGAAGTTCATTCCCA-GTCTAAGATCAGATCGGACCATGGGTTGCGACAGCAGGA
1 CTTAGGCATAAGGAGTTCATT-CCATGTCTAAGCCCAGACCGGACCATGGGATGCGACAACAGGA
* * * * ** *
13184658 TCGACAGGATGCAGGAGGGATCGGGTCGGTCCTTGACTTACACATTCTGCCTCTCCGACCGGCTA
65 TCGACAGCACGCAGGAGGGACCGGGCCGGTCCCCGACTTACACATTATGCCTCTCCGACCGGCTA
* * ** **
13184723 AGTGCCTACACACTCGTTTTGTGGGTTGG
130 AGTGCCCAAACACTCGTTTCATGGGTTAA
13184752 CTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
1 CTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
13184785 ATACGGAGTT
Statistics
Matches: 151, Mismatches: 36, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.02
158 88 0.58
159 57 0.38
160 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (158 bp):
CTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCAGACCGGACCATGGGATGCGACAACAGGAT
CGACAGCACGCAGGAGGGACCGGGCCGGTCCCCGACTTACACATTATGCCTCTCCGACCGGCTAA
GTGCCCAAACACTCGTTTCATGGGTTAA
Found at i:13184793 original size:26 final size:26
Alignment explanation
Indices: 13184757--13184809 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13184747 GTTGGCTTAG
13184757 GCATAAGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
*
13184783 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
13184809 G
1 G
13184810 ATTGGGTTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:13184997 original size:26 final size:26
Alignment explanation
Indices: 13184967--13185025 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
13184957 GTTGACTTAG
*
13184967 GCATACGGAGTTC-GTCACCAGTCTAA
1 GCATACGAAGTTCAGTC-CCAGTCTAA
*
13184993 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAGTCCCAGTCTAA
13185019 -CAT-CGAA
1 GCATACGAA
13185026 TTGAACTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 21 0.70
27 2 0.07
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (26 bp):
GCATACGAAGTTCAGTCCCAGTCTAA
Found at i:13185200 original size:12 final size:12
Alignment explanation
Indices: 13185183--13185213 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
13185173 CCGAAGGTTG
13185183 CGACAGCGGGAT
1 CGACAGCGGGAT
13185195 CGACAGCGGGAT
1 CGACAGCGGGAT
13185207 CGACAGC
1 CGACAGC
13185214 ACGCAGAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.29, G:0.39, T:0.06
Consensus pattern (12 bp):
CGACAGCGGGAT
Found at i:13185342 original size:26 final size:26
Alignment explanation
Indices: 13185306--13185358 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13185296 GTTGACTTAG
*
13185306 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13185332 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13185358 G
1 G
13185359 ATTGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13185843 original size:26 final size:26
Alignment explanation
Indices: 13185807--13185859 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13185797 GTTGGCTTAG
13185807 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13185833 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13185859 G
1 G
13185860 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13187111 original size:159 final size:158
Alignment explanation
Indices: 13186697--13187114 Score: 466
Period size: 159 Copynumber: 2.6 Consensus size: 158
13186687 CACCCGTTCA
* * * * ** * *
13186697 ATCCCCGGCTTACGCATCCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCCCGTTTCATGAGTTG
1 ATCCACGGCTTACGCATTCTGCCT-TTCGACCGGCTGAGCACCCGCACGCTTGTTTCGTGGGTTG
* * * *
13186762 GGTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGCTGTGGCAGCATGA
65 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGATCGAGGGCTGTGGCAGCAGGA
* * *
13186827 CTGACAGCATGCAGAGGGTGATCGGGCCG
130 CTGACAGCATGCAGAGGGGGACCGAGCCG
* ** * * * * *
13186856 ATCCTCGGCTTGTGCATTATGCCTCTCCGACCGACTCAGCACCCACACG-TTCGTTTCGTGGGTT
1 ATCCACGGCTTACGCATTCTGCCT-TTCGACCGGCTGAGCACCCGCACGCTT-GTTTCGTGGGTT
* * * * *
13186920 GACTTAGGCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGATCGGATCGAGGGTTGTGGCAGCA
64 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCGGATCGAGGGCTGTGGCAGCA
* *
13186983 GGA-TCGACAGCATGTAGGGGGGGACCGAGCCG
127 GGACT-GACAGCATGCAGAGGGGGACCGAGCCG
*
13187015 GTCCACGGCTTACGCATTCTGCCTTTCTGACCGGCTGAGCACCCGCACGCTTGTTTCGTGGGTTG
1 ATCCACGGCTTACGCATTCTGCCTTTC-GACCGGCTGAGCACCCGCACGCTTGTTTCGTGGGTTG
13187080 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13187115 TACAGAGTTC
Statistics
Matches: 211, Mismatches: 40, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
158 9 0.04
159 196 0.93
160 6 0.03
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
ATCCACGGCTTACGCATTCTGCCTTTCGACCGGCTGAGCACCCGCACGCTTGTTTCGTGGGTTGG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGATCGAGGGCTGTGGCAGCAGGAC
TGACAGCATGCAGAGGGGGACCGAGCCG
Found at i:13187122 original size:26 final size:26
Alignment explanation
Indices: 13187086--13187138 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13187076 GTTGGCTTAG
*
13187086 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13187112 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13187138 G
1 G
13187139 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13187582 original size:183 final size:183
Alignment explanation
Indices: 13187231--13187662 Score: 542
Period size: 183 Copynumber: 2.4 Consensus size: 183
13187221 TGCGTATTCT
* * * *
13187231 GCCTCTCCGATCGATTGAGCGTCTGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
1 GCCTCTCCGACCGGTTGAGCGTCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
* * *
13187296 TTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTATGGTAGCAGGACCGACAGCAGGATCGGTAGA
66 TTCCATGTCTAAGCCCCAGCCAAACCAAGGGTTATGGCAGCAAGACCGACAGCAGGATCGGTAGA
* * * * *
13187361 ACACAGAGGGGGGCCGGACTGATCTCAGCTTACGCATTATGCCTCTTCGGCCA
131 ACACAGAGGGGGACCGGACTAATCCCAGCTTACGCATTATGCCTCTCCAGCCA
* * *
13187414 GCCTCTCTGACCGGTTGAGCGTCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTTA
1 GCCTCTCCGACCGGTTGAGCGTCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
* * * * *
13187479 TTCCATGT-TAAGCCCCAGTCAAACCGAGGGTTATGGCAGCAAGACCGGCAGTAGGATCGGTAGC
66 TTCCATGTCTAAGCCCCAGCCAAACCAAGGGTTATGGCAGCAAGACCGACAGCAGGATCGGTAGA
* ** * * * *
13187543 ACGCAGAGGGGGATTGGGCTAATCCCTAGCTTTCGCATTATGCCTCTCCAGTCG
131 ACACAGAGGGGGACCGGACTAATCCC-AGCTTACGCATTATGCCTCTCCAGCCA
** ** * * *
13187597 GCCTCTCCGACCGGTTGAGCACCCGCACGCTCGTTTAATGGGTTGACATAGGCATACAGAGTTCA
1 GCCTCTCCGACCGGTTGAGCGTCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
13187662 T
66 T
13187663 CCTCAATCTA
Statistics
Matches: 211, Mismatches: 37, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
182 67 0.32
183 144 0.68
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (183 bp):
GCCTCTCCGACCGGTTGAGCGTCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
TTCCATGTCTAAGCCCCAGCCAAACCAAGGGTTATGGCAGCAAGACCGACAGCAGGATCGGTAGA
ACACAGAGGGGGACCGGACTAATCCCAGCTTACGCATTATGCCTCTCCAGCCA
Found at i:13188152 original size:158 final size:156
Alignment explanation
Indices: 13187674--13188174 Score: 481
Period size: 159 Copynumber: 3.2 Consensus size: 156
13187664 CTCAATCTAA
* * * **
13187674 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
13187738 AGCATGTAGGGGGGACCGGGT-GATCC-CTGACTTGCGTATTCTGCCTCTCCAGCCGACTCAGCA
65 AGCACGTAGGGGGGACC-GGTCGATCCTC-GACTT-TGTATTCTGCCTCTTCGGCCGGCTCAGCA
* *
13187801 CCCGTACGCCCGTTTCGTGGGTTGGCTTAG
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * * *
13187831 GCATAGGGAGTTAATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAAATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * **
13187896 GTACGCAGAGGGGGACCGGGCTGATCCTCGACTTTCGTATTATGCCTCTTCGGCCAGCTCAGTGC
66 GCACGTAG-GGGGGACCGGTC-GATCCTCGACTTT-GTATTCTGCCTCTTCGGCCGGCTCAGCAC
* * *
13187961 CTGCACGCTCATTTCGTGGGTTGAG-TTAT
128 CCGCACGCTCGTTTCGTGGGTTG-GCTTAG
* * * *
13187990 GCATACAGAGTTCATTCCCA-GTCTAAGATCAAATCGGACCAAGGGTTACGGCAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
13188054 AGCACGTAGGGGGGATCGAGTCGATCCTCGACTTATGCATTCTACCTCTTCGGTCGGCTGAGCAC
65 AGCACGTAGGGGGGACCG-GTCGATCCTCGACTT-TGTATTCTGCCTCTTCGGCCGGCTCAGCAC
* * *
13188119 CCACACACTTGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
13188148 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13188175 CAAATGGAGT
Statistics
Matches: 269, Mismatches: 63, Indels: 23
0.76 0.18 0.06
Matches are distributed among these distances:
156 3 0.01
157 58 0.22
158 92 0.34
159 111 0.41
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGTAGGGGGGACCGGTCGATCCTCGACTTTGTATTCTGCCTCTTCGGCCGGCTCAGCACCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13194730 original size:26 final size:26
Alignment explanation
Indices: 13194693--13194745 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13194683 GTTGACTTAG
*
13194693 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13194719 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13194745 G
1 G
13194746 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13195955 original size:159 final size:157
Alignment explanation
Indices: 13195505--13196259 Score: 573
Period size: 159 Copynumber: 4.8 Consensus size: 157
13195495 GTAGGATCGA
* * * * * * * * * * *
13195505 CAGCACGC-AGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCATCAGCCGGCTGAGC
1 CAGCACGCAAAGGGGGATCGGGCCGATCCTCGGCTT-TGCATTATGCCTCTTCAGTCGGCTCAGT
* *
13195569 GCCCTACACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
65 GCCC-ACACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAA
* * * * * *
13195633 GCTAGACCAAGGGTTGTGGTAGCGGGATCGA
128 TC-GGACCGAGGGTTGTGGCAGCGGGACCGG
* * * * * ** * * *
13195664 CAACACGC--AGGGAGGACCAGGCCGATCC-CTGGCTTACGCATTCTATCTC-TCTGGCCGGCTG
1 CAGCACGCAAAGGG-GGATCGGGCCGATCCTC-GGCTT-TGCATTATGCCTCTTC-AGTCGGCTC
* * * *
13195725 AGTG--C-CACGCCCGTTTCATGGGTTGGCTTAGGTATAGGGAGCTCATTCCATGTCTAAGCCCC
62 AGTGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCC
* *
13195787 AATCAGACCGAGGGTTATGGCAGCGGGACCGG
126 AATCGGACCGAGGGTTGTGGCAGCGGGACCGG
* ** * * *
13195819 TAGCACGCAAAGGGGGATCGGGCTAATCCTCGGCTTGTGCATTATGCCTCTTCAGCCGGTTCAGC
1 CAGCACGCAAAGGGGGATCGGGCCGATCCTCGGCTT-TGCATTATGCCTCTTCAGTCGGCTCAGT
* * * * **
13195884 GCCTACACGCTCGTTTCATGGGTTGGCTTATGCATACGAAGTTCATTCCCA-GTCTAAGATCGGA
65 GCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG-CCCAA
* * * ** * *
13195948 TCGGACCGAAGGTTGCGACAGTAGGATCGA
128 TCGGACCGAGGGTTGTGGCAGCGGGACCGG
* * * * * * * * *
13195978 CAGCACGC-AGGGGGGATCGGACCGATCCCCGACTTACGCATTCTGCCTCTCCAGTCGACTAAGT
1 CAGCACGCAAAGGGGGATCGGGCCGATCCTCGGCTT-TGCATTATGCCTCTTCAGTCGGCTCAGT
* * * *
13196042 GCCCGCACGCTCGTTTCATAGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGGCCCAGT
65 GCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA-GCCCAAT
* *
13196107 CGGACCAAGGGTTGTGGCAGCGGGACTGG
129 CGGACCGAGGGTTGTGGCAGCGGGACCGG
* * * * *
13196136 CAGCACGCAGAGGGGGACCGGGCCGATCCTTGGCTTTCACATTATGCCTC-TCCGATCGGCTCAG
1 CAGCACGCAAAGGGGGATCGGGCCGATCCTCGGCTTT-GCATTATGCCTCTTCAG-TCGGCTCAG
* * *
13196200 TGCCCACACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCA-TCCCTAGTCTAAGC
64 TGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGC
13196260 ATACCGAGTT
Statistics
Matches: 470, Mismatches: 107, Indels: 39
0.76 0.17 0.06
Matches are distributed among these distances:
155 78 0.17
156 40 0.09
157 11 0.02
158 132 0.28
159 206 0.44
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
CAGCACGCAAAGGGGGATCGGGCCGATCCTCGGCTTTGCATTATGCCTCTTCAGTCGGCTCAGTG
CCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAATCG
GACCGAGGGTTGTGGCAGCGGGACCGG
Found at i:13196211 original size:317 final size:314
Alignment explanation
Indices: 13195505--13196258 Score: 763
Period size: 317 Copynumber: 2.4 Consensus size: 314
13195495 GTAGGATCGA
* * * * ** * * *
13195505 CAGCACGC-AGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCAT-CAGCCGGCTGAG
1 CAGCACGCAAAGGGGGACCGGGCCAATCCTCGGCTTGTACATTATGCCTC-TCCAGCCGGCTCAG
* * * * *
13195568 CGCCCTACACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCC-ATGTCTAAG-CC
65 CGCCC-ACACGCTC-GTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCTA-GTCTAAGATC
** * * * ** ** *
13195630 CCAGCTAGACC-AAGGGTTGTGGTAGCGGGATCGACAACACGCAGGGAGGACCAGGCCGATCCCT
127 GGATC-GGACCGAA-GGTTGCGACAGTAGGATCGACAACACGCAGGGAGGACCAGGCCGATCCCC
* * ** * * * *
13195694 GGCTTACGCATTCTATCTCTCTGGCCGGCTGAGTGCCACGCCCGTTTCATGGGTTGGCTTAGGTA
190 GACTTACGCATTCTACCTCTCCAGCCGACTAAGTGCCACGCCCGTTTCATAGGTTGGCTTAGGCA
* *
13195759 TAGGGAGCTCATTCCATGTCTAAGCCCCAATCAGACCGAGGGTTATGGCAGCGGGACCGG
255 TAAGGAGCTCATTCCATGTCTAAGCCCCAATCAGACCAAGGGTTATGGCAGCGGGACCGG
* * * * * *
13195819 TAGCACGCAAAGGGGGATCGGGCTAATCCTCGGCTTGTGCATTATGCCTCTTCAGCCGGTTCAGC
1 CAGCACGCAAAGGGGGACCGGGCCAATCCTCGGCTTGTACATTATGCCTCTCCAGCCGGCTCAGC
* * *
13195884 GCCTACACGCTCGTTTCATGGGTTGGCTTATGCATACGAAGTTCATTCCC-AGTCTAAGATCGGA
66 GCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCA-TCCCTAGTCTAAGATCGGA
* * *
13195948 TCGGACCGAAGGTTGCGACAGTAGGATCGACAGCACGCAGGGGGGATC-GGACCGATCCCCGACT
130 TCGGACCGAAGGTTGCGACAGTAGGATCGACAACACGCAGGGAGGACCAGG-CCGATCCCCGACT
* * *
13196012 TACGCATTCTGCCTCTCCAGTCGACTAAGTGCCCGCACGCTCGTTTCATAGGTTGGCTTAGGCAT
194 TACGCATTCTACCTCTCCAGCCGACTAAGTG--C-CACGCCCGTTTCATAGGTTGGCTTAGGCAT
* * * * * *
13196077 AAGGAGTTCATTCCATGTCTAAGGCCCAGTCGGACCAAGGGTTGTGGCAGCGGGACTGG
256 AAGGAGCTCATTCCATGTCTAAGCCCCAATCAGACCAAGGGTTATGGCAGCGGGACCGG
* * * *
13196136 CAGCACGCAGAGGGGGACCGGGCCGATCCTTGGCTT-TCACATTATGCCTCTCC-GATCGGCTCA
1 CAGCACGCAAAGGGGGACCGGGCCAATCCTCGGCTTGT-ACATTATGCCTCTCCAG-CCGGCTCA
* * *
13196199 GTGCCCACACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAG
64 GCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCTAGTCTAAG
13196259 CATACCGAGT
Statistics
Matches: 361, Mismatches: 66, Indels: 23
0.80 0.15 0.05
Matches are distributed among these distances:
313 2 0.01
314 120 0.33
315 56 0.16
316 7 0.02
317 176 0.49
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (314 bp):
CAGCACGCAAAGGGGGACCGGGCCAATCCTCGGCTTGTACATTATGCCTCTCCAGCCGGCTCAGC
GCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCTAGTCTAAGATCGGAT
CGGACCGAAGGTTGCGACAGTAGGATCGACAACACGCAGGGAGGACCAGGCCGATCCCCGACTTA
CGCATTCTACCTCTCCAGCCGACTAAGTGCCACGCCCGTTTCATAGGTTGGCTTAGGCATAAGGA
GCTCATTCCATGTCTAAGCCCCAATCAGACCAAGGGTTATGGCAGCGGGACCGG
Found at i:13196282 original size:26 final size:26
Alignment explanation
Indices: 13196232--13196284 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13196222 GTTGACTTAG
* *
13196232 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACCGAGTTCATCCCTAATCTAA
13196258 GCATACCGAGTTCATTCCC-AATCTAA
1 GCATACCGAGTTCA-TCCCTAATCTAA
13196284 G
1 G
13196285 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATCCCTAATCTAA
Found at i:13202839 original size:159 final size:158
Alignment explanation
Indices: 13202614--13203212 Score: 508
Period size: 159 Copynumber: 3.7 Consensus size: 158
13202604 GCAGGATCAG
* * * * * *
13202614 CAGCACAC-AGGGGGGACCGGGCTAATCCCCAGCTTGTGCATTCTCCCTCTTCGATCGACTGAGC
1 CAGCACACAAAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGC
* * * *
13202678 ACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGT
66 ACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCTCAGC
13202743 CGGATCGAGGGTTGTGGCAGC-AGAACTGA
131 CGGA-CGAGGGTTGTGGCAGCAAGAAC-GA
* * * * * *
13202772 CAGTACGCAAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTC-ATCTCAG
1 CAGCACACAAAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGA-CTGAG
* * ** * *
13202836 CACCTGTACGCTTATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGA--TC
65 CACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA-ACCTC
* ** * *
13202898 AGACCGGACTGAGGGATACGGTAGCAAGATCGA
128 AG-CCGGAC-GAGGGTTGTGGCAGCAAGAACGA
* * * * * *
13202931 CAGCATACAGAGGGGGACCGGGTTGATCCTCGGCTTGCGAATTCTGCCTCTTCGGCCGACTGAGC
1 CAGCACACAAAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGC
* * *
13202996 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCGGC
66 ACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCTCAGC
* *
13203061 CGGACCGAGGGTTGTGGCAACAGGATCGGCAGCGGGA
131 CGGA-CGAGGGTTGTGGCAGCA--A---G-AAC--GA
* * * * * * * * **
13203098 TTGGCAGCACGCAGAGGGGGATCGGGCTAATCCCCAGCTTGCGCATTATGCCTCTCCTGTCGGTT
1 ----CAGCACACAAAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGACT
* * * *
13203163 GAGCACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCAT
62 GAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
13203213 CCCTAGTCTA
Statistics
Matches: 344, Mismatches: 73, Indels: 35
0.76 0.16 0.08
Matches are distributed among these distances:
158 14 0.04
159 219 0.64
160 13 0.04
161 1 0.00
164 1 0.00
165 2 0.01
167 2 0.01
171 92 0.27
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
CAGCACACAAAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGC
ACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCTCAGC
CGGACGAGGGTTGTGGCAGCAAGAACGA
Found at i:13203228 original size:26 final size:26
Alignment explanation
Indices: 13203198--13203250 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13203188 GTTGACTTAG
13203198 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
13203224 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13203250 G
1 G
13203251 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13204491 original size:159 final size:160
Alignment explanation
Indices: 13204114--13204766 Score: 576
Period size: 159 Copynumber: 4.0 Consensus size: 160
13204104 TAACCATAAG
* * * * * * *
13204114 GAGTTCATT-CTTAGTCTAAG-ATCAGACCAGACCGACAGTTGCGGCAGCAGGA-TCAGCAGCAC
1 GAGTTCATTCCAT-GTCTAAGCATCAGATCGGACTGAGAGTTGCGGTAGCAGGATTGAGCAGCAC
* * * * * * *
13204176 GCAG-GGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGTTAAGCGCCCGTA
65 GCAGAGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTAAGCGCCCGCA
* * * *
13204240 CGCCCGTTTCATGGGTTGGCTTAGGCATACA
130 CGCTCATTTCGTGGGTTGACTTAGGCATACA
** * * * * *
13204271 GAGTTCATTCCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGTAGCGGGACT-AGTAGCACG
1 GAGTTCATTCCATGTCTAAGCATCAGATCGGACTGAGAGTTGCGGTAGCAGGATTGAGCAGCACG
* * *
13204334 CAGAGGCGGATCGGGTCGATCCCCGACTTGTC-CATTATGCCTCTCC-AGCTGGCTCAGCACCCG
66 CAGAGG-GGATCGGGTCGATCCCCGACTTG-CGCATTATGCCTCTCCGA-CCGGCTAAGCGCCCG
*
13204397 AACGCTCATTTCGTGGGTTGACTTAGGCATACA
128 CACGCTCATTTCGTGGGTTGACTTAGGCATACA
* *
13204430 GAGTTCATTCCCA-GTCTAAG-ATCAGATTGGACTGAGTGTTGCGGTAGCAGGATTGA-CAGCAC
1 GAGTTCATT-CCATGTCTAAGCATCAGATCGGACTGAGAGTTGCGGTAGCAGGATTGAGCAGCAC
* * * * * * *
13204492 GCAGAGGGGATCGGGTCGGTCCCTGATTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCTCGCA
65 GCAGAGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTAAGCGCCCGCA
* *
13204557 CGCTCATTTTGTGGGTTGGCTTAGGCATACA
130 CGCTCATTTCGTGGGTTGACTTAGGCATACA
* * * * * *
13204588 GAGTTCATTCCATGTCTAAGCCCCAGTCAGATTGAGAGTTATGGCAGTAGGACTGATAGCGGGAT
1 GAGTTCATTCCATGTCTAAG---CA-TCAGATCG-GACTGA--G-AGT-TG-C-GGTAGCAGGAT
* * * * *
13204653 TG-GCAGCACGCAGAGGGGGATCGAG-CTGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGAC
55 TGAGCAGCACGCAGA-GGGGATCGGGTC-GATCCCCGACTTGCGCATTATGCCTCTCCGACCGGC
* *
13204716 TAAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
118 TAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACA
13204759 GAGTTCAT
1 GAGTTCAT
13204767 CCCTAGTTTA
Statistics
Matches: 402, Mismatches: 66, Indels: 42
0.79 0.13 0.08
Matches are distributed among these distances:
157 49 0.12
158 101 0.25
159 123 0.31
160 5 0.01
162 1 0.00
163 8 0.02
164 4 0.01
166 1 0.00
167 2 0.00
168 1 0.00
169 1 0.00
170 23 0.06
171 83 0.21
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (160 bp):
GAGTTCATTCCATGTCTAAGCATCAGATCGGACTGAGAGTTGCGGTAGCAGGATTGAGCAGCACG
CAGAGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTAAGCGCCCGCAC
GCTCATTTCGTGGGTTGACTTAGGCATACA
Found at i:13204757 original size:329 final size:316
Alignment explanation
Indices: 13204114--13204766 Score: 779
Period size: 317 Copynumber: 2.0 Consensus size: 316
13204104 TAACCATAAG
**
13204114 GAGTTCATTCTTAGTCTAAGATCAGACCAGACCGACAGTTGCGGCAGCAGGATCAGCAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGACAGTTGCGGCAGCAGGATCAGCAGCACGCA
* * *
13204179 GGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGTTAAGCGCCCGTACGCC
66 GGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCCCGCACGCC
* *
13204244 CGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGG
131 CATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGGG
* *
13204309 TTGTGGTAGCGGGACTAGTAGCACGCAGAGGCGGATCGGGTCGATCCCCGACTTGTCCATTATGC
196 TTGTGGTAGCGGGACTAGCAGCACGCAGAGGCGGATCGGCTCGATCCCCGACTTGTCCATTATGC
* * *
13204374 CTCTCCAGCTGGCTCAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACA
261 CTCTCCAGCCGACTAAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACA
*** * ** * *
13204430 GAGTTCATTCCCAGTCTAAGATCAGATTGGACTGAGTGTTGCGGTAGCAGGAT-TGACAGCACGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGACAGTTGCGGCAGCAGGATCAG-CAGCACGC
* * * * * * *
13204494 AGAGGGGATCGGGTCGGTCCCTGATTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCTCGCACG
65 AG-GGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCCCGCACG
* ** *
13204559 CTCATTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGATTGAG
129 CCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAG
* * * *
13204624 AGTTATGGCAGTAGGACTGATAGCGGGATTGGCAGCACGCAGAGGGGGATCGAGCT-GATCCCCG
194 -GGT-T----GT--G---G-TAGCGGGACTAGCAGCACGCAGAGGCGGATCG-GCTCGATCCCCG
* * * ** *
13204688 GCTTGTGCATTATGCCTCTCCGGCCGACTAAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
246 ACTTGTCCATTATGCCTCTCCAGCCGACTAAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGG
*
13204753 CATACG
311 CATACA
13204759 GAGTTCAT
1 GAGTTCAT
13204767 CCCTAGTTTA
Statistics
Matches: 280, Mismatches: 42, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
315 1 0.00
316 54 0.19
317 111 0.40
318 2 0.01
319 1 0.00
323 2 0.01
325 1 0.00
328 1 0.00
329 105 0.38
330 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (316 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGACAGTTGCGGCAGCAGGATCAGCAGCACGCA
GGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCCCGCACGCC
CATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGGG
TTGTGGTAGCGGGACTAGCAGCACGCAGAGGCGGATCGGCTCGATCCCCGACTTGTCCATTATGC
CTCTCCAGCCGACTAAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACA
Found at i:13205408 original size:515 final size:516
Alignment explanation
Indices: 13204704--13205727 Score: 1301
Period size: 515 Copynumber: 2.0 Consensus size: 516
13204694 GCATTATGCC
* *
13204704 TCTCCGGCCGACTAAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCC
1 TCTCCGGCCGACTAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCC
* * * * *
13204769 CTAGTTTAAGCATATGGAGTTCATTCCCATTCTAAGATCGAATCAGACCGAGGGTTACGGCAGCA
66 CCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCAAGGGTTACGACAGCA
* * * *
13204834 GTATCGATCGCATGCAGAGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCG-GCT
131 GGATCGATCGCACGCAGAGGGGGACCAGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGATC-
* * * * *
13204898 GGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
195 GACTGAGCACCCGCACGCCCGTTTCATGGGTTAGCATAGGCATAGGGAGTTCATTCCATGTCTAA
* **** * * * * * *
13204963 GCCTCTGTTGGACCGAGGGTTGTGGCAGCT-GGACCAGCAGCACACAGAGGGGGATCAGGCCAAT
260 GCCCCAACCGAAACGACGGTTGTGACAG-TGGGACCAGCAGCACACAGAGGGGGACCAAGCCAAT
* *
13205027 CCCCAGCTTGTGCATTATGCCTCTCCGACCGGCTCAGTGCCCGAACGCTCATTTCATGGGTTGAC
324 CCCCAGCTTGCGCATTATGCCTCTCCGACCAGCTCAGTGCCCGAACGCTCATTTCATGGGTTGAC
* * *
13205092 ATAGACATACAGAGTTCATTCCCAATCTAAG-ATAAAATCGGATCAAGTGTTGTGGCAGCAGTAT
389 ATAGACATACAGAGTTCATTCCCAATCTAAGAAT-AAATCGGATCAAGGGTTGCGGCAGCAGGAT
* * *
13205156 CAACAGCACGCAAGGGGGGATTGGGCC-GATCCCTGGCTTATGCATTCTGCCTCTCCGACCAGCA
453 CAACAGCACGCAAGGGGGGACTGGGCCAG-TCCCTGACTTACGCATTCTGCCTCTCCGACCAGCA
* * *
13205220 TCTCCGGTCGGCTAAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATCC
1 TCTCCGGCCGACTAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCC
* * * *
13205285 CCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGA-CTAGACTAAGGGTTGCGACAGT
66 CCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAATC-AGACCAAGGGTTACGACAGC
*
13205349 AGGATCGA-CAGCACGCAG-GGGGGACC-GAGTCGAT-CCTCAGCTTGCGCATTCTGCCTCTCCG
130 AGGATCGATC-GCACGCAGAGGGGGACCAG-GCCGATCCCT-AGCTTGCGCATTCTGCCTCTCCG
*
13205410 ATCGACTGAGCACCCGCATGCCCGTTTCATGGGTTAGCATAGGCATAGGGAGTTCATTCCATGTC
192 ATCGACTGAGCACCCGCACGCCCGTTTCATGGGTTAGCATAGGCATAGGGAGTTCATTCCATGTC
* ** ** * *
13205475 TAAGCCCCAACCGAAATGACGGTTGTGACAGTGGGACTGGCAGCACGTAGAGGGGGACCAAGTCG
257 TAAGCCCCAACCGAAACGACGGTTGTGACAGTGGGACCAGCAGCACACAGAGGGGGACCAAGCCA
* ** * * * **
13205540 ATCCCCGGCTTGCGCATTATGCCTCTCCGGTCAGCTTAGTGCCCGCATGCTTGTTTCATGGGTTG
322 ATCCCCAGCTTGCGCATTATGCCTCTCCGACCAGCTCAGTGCCCGAACGCTCATTTCATGGGTTG
* * * * * **
13205605 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATAGATCGGATTGAGGGTTGCGGCAGCAGGA
387 ACATAGACATACAGAGTTCATTCCCAATCTAAGAATAAATCGGATCAAGGGTTGCGGCAGCAGGA
* *
13205670 TTAACAGCACGCATGGGGGGACTGGGCCAGTCCCTGACTTACGCATTCTGCCTCTCCG
452 TCAACAGCACGCAAGGGGGGACTGGGCCAGTCCCTGACTTACGCATTCTGCCTCTCCG
13205728 GTCGATTGAG
Statistics
Matches: 432, Mismatches: 68, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
514 5 0.01
515 296 0.69
516 131 0.30
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (516 bp):
TCTCCGGCCGACTAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCC
CCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCAAGGGTTACGACAGCA
GGATCGATCGCACGCAGAGGGGGACCAGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGATCG
ACTGAGCACCCGCACGCCCGTTTCATGGGTTAGCATAGGCATAGGGAGTTCATTCCATGTCTAAG
CCCCAACCGAAACGACGGTTGTGACAGTGGGACCAGCAGCACACAGAGGGGGACCAAGCCAATCC
CCAGCTTGCGCATTATGCCTCTCCGACCAGCTCAGTGCCCGAACGCTCATTTCATGGGTTGACAT
AGACATACAGAGTTCATTCCCAATCTAAGAATAAATCGGATCAAGGGTTGCGGCAGCAGGATCAA
CAGCACGCAAGGGGGGACTGGGCCAGTCCCTGACTTACGCATTCTGCCTCTCCGACCAGCA
Found at i:13205658 original size:159 final size:154
Alignment explanation
Indices: 13205294--13205796 Score: 440
Period size: 159 Copynumber: 3.2 Consensus size: 154
13205284 CCCAGTCTAA
* * * * *
13205294 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGACTAGACTAAGGGTTGCGACAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGAT-AGAC-GGAATGAGGGTTGCGACAGTAGGAT-GAC
* * * * * *
13205358 AGCACGCAGGGGGGACCGAGTCGATCCTCAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCAC
62 AGCACGCAGGGGGGACCAAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCG-CTTAGCGC
** *
13205423 CCGCATGCCCGTTTCATGGGTTAGCATAG
126 CCGCATGCTTGTTTCATGGGTTAGCTTAG
* ** * * * * *
13205452 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGAAATGACGGTTGTGACAGTGGGACTGGC
1 GCATACGGAGTTCATTCCATGTCTAAG--ATAGA-CGGAATGAGGGTTGCGACAGTAGGA-TGAC
* * *
13205516 AGCACGTAGAGGGGGACCAAGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCAGCTTAGTG
62 AGCACGCAG-GGGGGACCAAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTC-GCTTAGCG
13205581 CCCGCATGCTTGTTTCATGGGTT-GACTTAG
125 CCCGCATGCTTGTTTCATGGGTTAG-CTTAG
* * * *
13205611 GCATACGGAGTTCATTCCCA-GTCTAAGAATAGATCGGATTGAGGGTTGCGGCAGCAGGATTAAC
1 GCATACGGAGTTCATT-CCATGTCTAAG-ATAGA-CGGAATGAGGGTTGCGACAGTAGGA-TGAC
** * * * * * *
13205675 AGCACGCATGGGGGGA-CTGGGCCAGTCCCTGACTTACGCATTCTGCCTCTCCGGTCGATTGAGC
62 AGCACGCA-GGGGGGACCAAGTCGA-TCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGCTT-AGC
** *
13205739 GCCCGCGCGCTTGTTTCGTGGGTTAGCTTAG
124 GCCCGCATGCTTGTTTCATGGGTTAGCTTAG
13205770 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13205797 CATACAGAGT
Statistics
Matches: 277, Mismatches: 53, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
157 3 0.01
158 62 0.22
159 206 0.74
160 6 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCATGTCTAAGATAGACGGAATGAGGGTTGCGACAGTAGGATGACAGCA
CGCAGGGGGGACCAAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGCTTAGCGCCCGCA
TGCTTGTTTCATGGGTTAGCTTAG
Found at i:13205806 original size:26 final size:26
Alignment explanation
Indices: 13205770--13205822 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13205760 GTTAGCTTAG
*
13205770 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13205796 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13205822 G
1 G
13205823 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13206003 original size:26 final size:26
Alignment explanation
Indices: 13205966--13206018 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13205956 GTTGACTTAG
*
13205966 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13205992 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13206018 G
1 G
13206019 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13207752 original size:26 final size:26
Alignment explanation
Indices: 13207723--13207775 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13207713 GTTGACATAG
*
13207723 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
* *
13207749 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
13207775 G
1 G
13207776 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGCCTAA
Found at i:13207776 original size:196 final size:197
Alignment explanation
Indices: 13207425--13207807 Score: 459
Period size: 196 Copynumber: 1.9 Consensus size: 197
13207415 GCGGCAGCAA
* * * * * * *
13207425 GATCGACGGCATGTAGGGGGGATCGGGCTGATCCTCGGCTTACGCATTCTACCTCTCCCCACCGG
1 GATCGACAGCACGCAGGGGGGATCGGACCGATCCTCGACTTACACATTCTACCTCTCCCCACCGG
* * * * * * *
13207490 CTGAGCGCCCGTAAGCTCGTTTCGTCAGTTGGCTTAGGCATGCGGAGTTGATTCCATGTCTAAGC
66 CTGAGCGCCCGTAAGCTCATTTCGTCAGTTGACATAGGCATACGGAGTTCATCCCATGCCTAAGC
* * * * *
13207555 ATACGAATTTCACTCCCAATCTAAGAT-AGGACCAGACCGAGGGTTGCGGTAGCAGGACCAGCAA
131 ATACGAAGTTCACTCCCAATCTAAGATCA-GACCAGACCAAAGGTTGCAGCAGCAGGACCAGCAA
13207619 TAG
195 TAG
* * *
13207622 GATCGACAGCACGCAGGGGGGATCGGACCGATCCTTGACTTGCACATTCTACCTCT-CCGACCGG
1 GATCGACAGCACGCAGGGGGGATCGGACCGATCCTCGACTTACACATTCTACCTCTCCCCACCGG
* * **
13207686 CTGAGTGCCCGTACGCTCATTTCGTGGGTTGACATAGGCATACGGAGTTCATCCCCA-GCCTAAG
66 CTGAGCGCCCGTAAGCTCATTTCGTCAGTTGACATAGGCATACGGAGTTCAT-CCCATGCCTAAG
* *
13207750 CATAC-AGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTTGCAGCAGCAGGA
130 CATACGA-AGTTCACTCCCAATCTAAGATCAGACCAGACCAAAGGTTGCAGCAGCAGGA
13207808 TCGGCAGCAT
Statistics
Matches: 155, Mismatches: 28, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
195 1 0.01
196 103 0.66
197 51 0.33
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (197 bp):
GATCGACAGCACGCAGGGGGGATCGGACCGATCCTCGACTTACACATTCTACCTCTCCCCACCGG
CTGAGCGCCCGTAAGCTCATTTCGTCAGTTGACATAGGCATACGGAGTTCATCCCATGCCTAAGC
ATACGAAGTTCACTCCCAATCTAAGATCAGACCAGACCAAAGGTTGCAGCAGCAGGACCAGCAAT
AG
Found at i:13208096 original size:26 final size:26
Alignment explanation
Indices: 13208066--13208116 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13208056 TTGGCTTAGG
*
13208066 CATACGGAGTTCATTC-CATGTCTAAA
1 CATACAGAGTTCATTCTCA-GTCTAAA
13208092 CATACAGAGTTCATTCTCAGTCTAA
1 CATACAGAGTTCATTCTCAGTCTAA
13208117 GAGTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCTCAGTCTAAA
Found at i:13208823 original size:26 final size:26
Alignment explanation
Indices: 13208787--13208839 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13208777 GTTGACTTAG
13208787 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
13208813 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
13208839 G
1 G
13208840 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:13209129 original size:159 final size:158
Alignment explanation
Indices: 13208920--13209346 Score: 427
Period size: 158 Copynumber: 2.7 Consensus size: 158
13208910 TGCTCATTCG
* * * * *
13208920 GCCTCTCC-GACCGACTGAGCACCCACACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
1 GCCTCTCCAG-CCGGCTGAGCACACGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTT
* * *
13208983 CATTCCATGTCTAAGCCCCAGTCGGATCAAGGGTTGTGGCAGCAGGACCGACAGTACACAGAGGG
64 CATTCCATGTCTAAGCCCCAGTCGGAACGAGGGTTGTGGCAGCAGGACCGACAGCACACAG-GGG
* *
13209048 GCACCGGACCGAT-CCTCGGCTTACGCATTAT
128 GCACCAGACCGATGCC-CGACTTACGCATTAT
* * *
13209079 GCCTCTCCAGCCGGCTTAGCACACGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCG
1 GCCTCTCCAGCCGGCTGAGCACACGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
* ** * * * * **
13209144 TTCCCA-ATCTAAG-ATCAGATC-GAACTGAGGGTTGCGACAGCAAGATCGACAGCACGTAGGGG
66 TT-CCATGTCTAAGCCCCAG-TCGGAAC-GAGGGTTGTGGCAGCAGGACCGACAGCACACAGGGG
* * *
13209206 GGACCAGACCGATGCCCGACTTGCGCATTCT
128 GCACCAGACCGATGCCCGACTTACGCATTAT
* * * * * * *
13209237 GCCTCTCCGGTCGGCTGAGCGCCCGCATGCTTGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCA
1 GCCTCTCCAGCCGGCTGAGCACACGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
* * *
13209302 TTCCATGTCTAA-CCCTAGCCGGACCGAGGGTTGTGGCAGCAGGAC
66 TTCCATGTCTAAGCCCCAGTCGGAACGAGGGTTGTGGCAGCAGGAC
13209347 TGGCAGCGGC
Statistics
Matches: 214, Mismatches: 45, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
157 20 0.09
158 99 0.46
159 90 0.42
160 5 0.02
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
GCCTCTCCAGCCGGCTGAGCACACGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
TTCCATGTCTAAGCCCCAGTCGGAACGAGGGTTGTGGCAGCAGGACCGACAGCACACAGGGGGCA
CCAGACCGATGCCCGACTTACGCATTAT
Found at i:13209288 original size:158 final size:158
Alignment explanation
Indices: 13208876--13209313 Score: 438
Period size: 159 Copynumber: 2.8 Consensus size: 158
13208866 GCAGGATCAG
* * * * * *
13208876 CAGCACGAAGGGGGGACCAGGCCGATCTCGGGCTTGCTCATTCGGCCTCTCCGACCGACTGAGCA
1 CAGCACGAAGGGGGGACCAGACCGATC-CCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCA
* * * * * *
13208941 CCCACACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGT
65 CCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCACCAGT
* * * *
13209005 CGGATCAAGGGTTGTGGCAGCAGGACCGA
130 CGAATCAAGGGTTGCGACAGCAAGACCGA
* * * * * * *
13209034 CAGTAC-ACAGAGGGGCACCGGACCGATCCTCGGCTTACGCATTATGCCTCTCCAGCCGGCTTAG
1 CAGCACGA-AG-GGGGGACCAGACCGATCC-CGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
* * * * *
13209098 CACACGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCGTTCCCA-ATCTAAG-ATCA
63 CACCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCACCA
* *
13209161 GATCGAA-CTGAGGGTTGCGACAGCAAGATCGA
128 G-TCGAATC-AAGGGTTGCGACAGCAAGACCGA
* * * *
13209193 CAGCACGTAGGGGGGACCAGACCGATGCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
1 CAGCACGAAGGGGGGACCAGACCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCA
* * *
13209258 CCCGCATGCTTGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA
65 CCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAA
13209314 CCCTAGCCGG
Statistics
Matches: 223, Mismatches: 48, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.02
158 100 0.45
159 116 0.52
160 3 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (158 bp):
CAGCACGAAGGGGGGACCAGACCGATCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCAC
CCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCACCAGTC
GAATCAAGGGTTGCGACAGCAAGACCGA
Found at i:13209500 original size:26 final size:25
Alignment explanation
Indices: 13209471--13209542 Score: 99
Period size: 25 Copynumber: 2.8 Consensus size: 25
13209461 GTTGACTTAG
13209471 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCAT-CCCAGTCTAA
* *
13209497 GCATACGGAGTTCATCCCAATCTAA
1 GCATATGGAGTTCATCCCAGTCTAA
*
13209522 GCATATAGAGTTCATTCCCAG
1 GCATATGGAGTTCA-TCCCAG
13209543 GCTTACATCG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 21 0.52
26 19 0.47
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (25 bp):
GCATATGGAGTTCATCCCAGTCTAA
Found at i:13209883 original size:158 final size:158
Alignment explanation
Indices: 13209668--13210022 Score: 374
Period size: 158 Copynumber: 2.2 Consensus size: 158
13209658 CCCATTTTTT
* * * **
13209668 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGAACCAAGGGTTGTGGCA
1 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAGACGAACCAAGGGTTACGGCA
* * * * * *
13209733 ACGGGACCGACAGCACACAGAGGGGGACTGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGG
66 ACAGGACCGACAGCACACAG-GGGGGACCGAGCCAATCCCCGACTTACGCATTATGCCTCTCCGG
* *
13209798 TC-GCTCAGCGCCTGAACGCTCGTTTCGA
130 TCGGCTCAGCGCCCGAACACTCGTTTCGA
* * * **
13209826 GGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATC-AGACTGGACTGAGGGTTACGG
1 GGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCTAGAC-GAACCAAGGGTTACGG
* * ** * * * *
13209889 TAGCAGGATTGACAGCACGCAGGGGGGACCGAGCCAATCCCTGGCTTACGCATTCTGCCTCTCCG
64 CAACAGGACCGACAGCACACAGGGGGGACCGAGCCAATCCCCGACTTACGCATTATGCCTCTCCG
* * * *
13209954 GTCGGCTGAGCGCCCGCACACTCGTTTTGT
129 GTCGGCTCAGCGCCCGAACACTCGTTTCGA
* *
13209984 TGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
1 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
13210023 TATACGGAGT
Statistics
Matches: 160, Mismatches: 33, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
157 42 0.26
158 117 0.73
159 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAGACGAACCAAGGGTTACGGCA
ACAGGACCGACAGCACACAGGGGGGACCGAGCCAATCCCCGACTTACGCATTATGCCTCTCCGGT
CGGCTCAGCGCCCGAACACTCGTTTCGA
Found at i:13210034 original size:26 final size:26
Alignment explanation
Indices: 13209998--13210048 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13209988 TGGCTTAGGC
13209998 ATACAGAGTTCATT-CCATGTCTAAGT
1 ATACAGAGTTCATTCCCA-GTCTAAGT
*
13210024 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
13210049 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:13210222 original size:26 final size:26
Alignment explanation
Indices: 13210193--13210243 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13210183 TTAACTTAGG
13210193 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
* *
13210219 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
13210244 GATCGTACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:13210233 original size:196 final size:196
Alignment explanation
Indices: 13209893--13210247 Score: 489
Period size: 196 Copynumber: 1.8 Consensus size: 196
13209883 TTACGGTAGC
* *** * *
13209893 AGGATTGACAGCACGCAGGGGGGACCGAGCCAATCCCTGGCTTACGCATTCTGCCTCTCCGGTCG
1 AGGATCGACAGCACGCAGGGGGGACCGAGCCAATCCCCAACTTACGCATTCTACCTCTCCGATCG
* * * ** * *
13209958 GCTGAGCGCCCGCACACTCGTTTTGTTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
66 ACTGAGCGCCCGCACACTCATTTCGTTGGTTAACTTAGGCATACAGAGTTCATCCCATGTCTAAC
*
13210023 TATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTAGCAGCAGGACCAGCAG
131 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTAGCAGCAGGACCAGCAG
13210088 T
196 T
* *
13210089 AGGATCGACAGCACGTAGGGGGGACCGAGCCGATCCCCAACTTACGCATTCTACCTCTCCGATCG
1 AGGATCGACAGCACGCAGGGGGGACCGAGCCAATCCCCAACTTACGCATTCTACCTCTCCGATCG
* * * *
13210154 ATTGAGCGCCCGTACGCTCATTTCG-TGTGTTAACTTAGGCATACGGAGTTCATCCCCA-GTCTA
66 ACTGAGCGCCCGCACACTCATTTCGTTG-GTTAACTTAGGCATACAGAGTTCAT-CCCATGTCTA
*
13210217 ACCATATGGAGTTCATTCCCAGTCTAAGATC
129 ACCATACGGAGTTCATTCCCAGTCTAAGATC
13210248 GTACCGGACC
Statistics
Matches: 136, Mismatches: 21, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
195 2 0.01
196 131 0.96
197 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24
Consensus pattern (196 bp):
AGGATCGACAGCACGCAGGGGGGACCGAGCCAATCCCCAACTTACGCATTCTACCTCTCCGATCG
ACTGAGCGCCCGCACACTCATTTCGTTGGTTAACTTAGGCATACAGAGTTCATCCCATGTCTAAC
CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTAGCAGCAGGACCAGCAG
T
Found at i:13210313 original size:173 final size:171
Alignment explanation
Indices: 13210098--13210417 Score: 462
Period size: 173 Copynumber: 1.9 Consensus size: 171
13210088 TAGGATCGAC
*
13210098 AGCACGTAGGGGGGACCGAGCCGATCCCCAACTTACGCATTCTACCTCTCCGATCGATTGAGCGC
1 AGCACGTAGGGGGGACCGAGCCGATCCCCAACTTACGCATTCTACCTCTCCGATCGACTGAGCGC
* *
13210163 CCGTACGCTCATTTCGTGTGTTAACTTAGGCATACGGAGTTCATCCCCA-GTCTAACCATATGGA
66 CCGTACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCAT-CCCATGTCTAACCATA-CGA
13210227 GTTCATTCCCAGTCTAAGATCGTACCGGACCAATGGTTGCGGT
129 GTTCATTCCCAGTCTAAGATCGTACCGGACCAATGGTTGCGGT
* * * ** * *
13210270 AGCACGTAGAGGGGGACTGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGCTGAGCG
1 AGCACGTAG-GGGGGACCGAGCCGATCCCCAACTTACGCATTCTACCTCTCCGATCGACTGAGCG
* ** * *
13210335 CCCGTATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAG
65 CCCGTACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCATGTCTAACCATACGAG
*
13210400 TTCATTCCCAGTGTAAGA
130 TTCATTCCCAGTCTAAGA
13210418 GTTTGAGCCA
Statistics
Matches: 130, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
172 32 0.25
173 98 0.75
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.26
Consensus pattern (171 bp):
AGCACGTAGGGGGGACCGAGCCGATCCCCAACTTACGCATTCTACCTCTCCGATCGACTGAGCGC
CCGTACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCATGTCTAACCATACGAGT
TCATTCCCAGTCTAAGATCGTACCGGACCAATGGTTGCGGT
Found at i:13210991 original size:26 final size:26
Alignment explanation
Indices: 13210955--13211007 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13210945 GTTGACTTAG
*
13210955 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13210981 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13211007 G
1 G
13211008 ATTAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13211364 original size:158 final size:156
Alignment explanation
Indices: 13210981--13211488 Score: 378
Period size: 158 Copynumber: 3.2 Consensus size: 156
13210971 CCCAGTCTAA
* * **
13210981 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGATCGGAACGAGGGTTGTGGCAGCAGGATCGACA
* * * ** * **
13211046 ACACGCAGGGGGGACCGGGCCGTTGCCTGGCTTGCACATTCTGCCTCTCTGGTCGACTGAGTGCC
65 GCACGCAGGGGGGACCGGGCCG-TGCCTGGCTTGCACATTATGCCTATCTGACCGACTCAACGCC
* * * *
13211111 CGGATGCCCGTTTCATGGGTTGGCTTAG
129 CGAACGCCCATTTCATGGGTTGACTTAG
* * ** * * * *
13211139 GCATAGGGAGTTTATTCCATGTCTAAG-TCCTAACCGAACTGAGGGTTGTGGCAGCGGGA-CTAG
1 GCATACGGAGTTCATTCCA-GTCTAAGATCAGATCGGAAC-GAGGGTTGTGGCAGCAGGATCGA-
* * * *
13211202 CAGCACGCAGAGTGGGATCGGG-C-TGACCTCGGCTTGCACATTATGCCTATTTGACCGGCTCAA
63 CAGCACGCAG-GGGGGACCGGGCCGTG-CCT-GGCTTGCACATTATGCCTATCTGACCGACTCAA
* ** **
13211265 CGCCTGAACGTTCATTTTGTGGGTTGACTTAG
125 CGCCCGAACGCCCATTTCATGGGTTGACTTAG
* *
13211297 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGTGCCAGCAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGATCGGAACGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * * * * * * ** * *
13211362 GCACACAAGGGAGGACCAGGTCGGTCCCCGGTTTACGCATTCTGCCTCTCTGGTCGGCT-AAGCA
65 GCACGC-AGGGGGGACC-GGGCCGTGCCTGGCTTGCACATTATGCCTATCTGACCGACTCAA-CG
* * *
13211426 CCCGTACGCTCATTTCATGGGTTGGCTTAG
127 CCCGAACGCCCATTTCATGGGTTGACTTAG
*
13211456 GCATATGGAGTTCATTCCCAGTCTAAGATCAGA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGA
13211489 CTGGGTTGAT
Statistics
Matches: 268, Mismatches: 67, Indels: 29
0.74 0.18 0.08
Matches are distributed among these distances:
156 2 0.01
157 14 0.05
158 148 0.55
159 99 0.37
160 4 0.01
161 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.25
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGATCGGAACGAGGGTTGTGGCAGCAGGATCGACAG
CACGCAGGGGGGACCGGGCCGTGCCTGGCTTGCACATTATGCCTATCTGACCGACTCAACGCCCG
AACGCCCATTTCATGGGTTGACTTAG
Found at i:13211966 original size:159 final size:159
Alignment explanation
Indices: 13211575--13212062 Score: 384
Period size: 159 Copynumber: 3.1 Consensus size: 159
13211565 TTAGCATAGG
* * * *
13211575 GAGTTCATTCCATATCCAAGCCCCAGTCGGA-TCGAGGGTTGTGGCAGCGAGACAGACAGCACGC
1 GAGTTCATTCCATGTCTAAGCCCCAGTCGGACT-GAGGGTTGTGGCAGCGGGACCGACAGCACGC
* * * * *
13211639 AGAGGGGGATCGGGTCGATTCCCAGCATGCGCATTATGCCTCTCTGGCTAGCTCAGCACCCGAAC
65 AGAGGGGGACCAGGTCGATCCCCAGCATGCGCATTATACCTCTCTGGCGAGCTCAGCACCCGAAC
13211704 GCTCGTTTCATGGGTTAACTTAGGCATACT
130 GCTCGTTTCATGGGTTAACTTAGGCATACT
* *** * * ** * * *
13211734 GAGTTCATTTC-TAGTCTAAG-ATTAGATCGGACCGAAGGTTGTGGCAGTAGGATCGACAACACA
1 GAGTTCATTCCAT-GTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGCAGCGGGACCGACAGCACG
* * * * * * * * * *
13211797 CAG-GAGGGGACCAGGTTGGTCCCCGGCTTGCGTATTCTACCTCT-TCGGCCGA-TTGAGCGCCT
64 CAGAG-GGGGACCAGGTCGATCCCCAGCATGCGCATTATACCTCTCT-GG-CGAGCTCAGCACCC
* **
13211859 GCACGCTCGTTTCATGGGTTGGCTTAGGCATAC-
126 GAACGCTCGTTTCATGGGTTAACTTAGGCATACT
* *
13211892 GAAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCGGGACCGACAGTACGC
1 G-AGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCGACAGCACGC
* * * * * *
13211957 AGAGGGGGACC-GGACCGATCCTC-GACTTGTGCATTATGCCTCTCCGGCTGA-CTCAGCACCCG
65 AGAGGGGGACCAGG-TCGATCCCCAG-CATGCGCATTATACCTCTCTGGC-GAGCTCAGCACCCG
* * * * * *
13212019 AACGGTCATTTCGTGGGTTGACTTAGCCATACG
127 AACGCTCGTTTCATGGGTTAACTTAGGCATACT
*
13212052 GAGTACATTCC
1 GAGTTCATTCC
13212063 CAGTCAAAGA
Statistics
Matches: 248, Mismatches: 66, Indels: 30
0.72 0.19 0.09
Matches are distributed among these distances:
158 10 0.04
159 231 0.93
160 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCGACAGCACGCA
GAGGGGGACCAGGTCGATCCCCAGCATGCGCATTATACCTCTCTGGCGAGCTCAGCACCCGAACG
CTCGTTTCATGGGTTAACTTAGGCATACT
Found at i:13212103 original size:318 final size:318
Alignment explanation
Indices: 13211505--13212231 Score: 773
Period size: 318 Copynumber: 2.3 Consensus size: 318
13211495 TGATCACCGG
* * * * * * * * * *
13211505 CTTGTGCATTCTGCCTCTCCAACCGGTTGAGCACCCGCACGCCCGTTTCGTGAGATGACTTTAG-
1 CTTGCGCATTCTACCTCTCCAGCCGATTGAGCGCCCGCACGCTCGTTTCATGGGTTGGC-TTAGA
* * * * *
13211569 CATAGGGAGTTCATTCCATATCCAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCGAGACAGACAG
65 CATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGAGACAGACAG
* ** *
13211634 CACGCAGAGGGGGATCGGGTCGATTCCCAGCATGCGCATTATGCCTCTCTGGCTAGCTCAGCACC
130 CACGCAGAGGGGGACCGGACCGATTCCCAGCATGCGCATTATGCCTCTCCGGCTAGCTCAGCACC
* * * * * * * * * *
13211699 CGAACGCTCGTTTCATGGGTTAACTTAGGCATACTGAGTTCATTTCTAGTCTAAGATTAGATCGG
195 CGAACGCTCATTTCATGGGTTAACTTAGCCATACGGAGTACATTCCCAGTCAAAGATCAGACCAG
* * * *** *
13211764 ACCGAAGGTTGTGGCAGTAGGATCGACAACACACAGGAGGG-GACCAGGTTGGTCCCCGG
260 ACCGAAGGTTGCGACAGTAGGATAGACAACACACAGG-GGGAGACCAGGCCAGTCCCCGA
* * * * *
13211823 CTTGCGTATTCTACCTCTTCGGCCGATTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGC
1 CTTGCGCATTCTACCTCTCCAGCCGATTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGAC
* *
13211888 ATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGA-CTGAGGGTTGTGGCAGCGGGACCGACAG
66 ATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGATC-GAGGGTTGTGGCAGCGAGACAGACAG
* * *
13211952 TACGCAGAGGGGGACCGGACCGA-TCCTC-GACTTGTGCATTATGCCTCTCCGGCT-GACTCAGC
130 CACGCAGAGGGGGACCGGACCGATTCC-CAG-CATGCGCATTATGCCTCTCCGGCTAG-CTCAGC
* * * *
13212014 ACCCGAACGGTCATTTCGTGGGTTGACTTAGCCATACGGAGTACATTCCCAGTCAAAGATCGGAC
192 ACCCGAACGCTCATTTCATGGGTTAACTTAGCCATACGGAGTACATTCCCAGTCAAAGATCAGAC
* * * * * ** * *
13212079 CAGACTGATGGTTGCGATAGTAGGATAGATAGCACGTAGGGGGAGACCGGGCCAGTCCTCGA
257 CAGACCGAAGGTTGCGACAGTAGGATAGACAACACACAGGGGGAGACCAGGCCAGTCCCCGA
* * * * *
13212141 CTTGTGCATTCTACCTCTCCATCCGGTTGAGTGCCCGTACGCTCGTTTCATGGGTTGGCTTAGAC
1 CTTGCGCATTCTACCTCTCCAGCCGATTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGAC
*
13212206 ATACGAAGTTCGTTCCATGTCTAAGC
66 ATACGAAGTTCATTCCATGTCTAAGC
13212232 ATACGGAGTT
Statistics
Matches: 334, Mismatches: 69, Indels: 12
0.80 0.17 0.03
Matches are distributed among these distances:
317 13 0.04
318 321 0.96
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (318 bp):
CTTGCGCATTCTACCTCTCCAGCCGATTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGAC
ATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGAGACAGACAGC
ACGCAGAGGGGGACCGGACCGATTCCCAGCATGCGCATTATGCCTCTCCGGCTAGCTCAGCACCC
GAACGCTCATTTCATGGGTTAACTTAGCCATACGGAGTACATTCCCAGTCAAAGATCAGACCAGA
CCGAAGGTTGCGACAGTAGGATAGACAACACACAGGGGGAGACCAGGCCAGTCCCCGA
Found at i:13212234 original size:26 final size:26
Alignment explanation
Indices: 13212205--13212256 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13212195 TTGGCTTAGA
*
13212205 CATACGAAGTTCGTT-CCATGTCTAAG
1 CATACGAAGTTCATTCCCA-GTCTAAG
*
13212231 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
13212257 ATCAAACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:13212413 original size:183 final size:185
Alignment explanation
Indices: 13212046--13212990 Score: 752
Period size: 183 Copynumber: 5.0 Consensus size: 185
13212036 TTGACTTAGC
* * ** * * * * * * *
13212046 CATACGGAGTACATTCCCAGTCAAAGATCGGACCAGACTGATGGTTGC-GATAG-TAGGATAGAT
1 CATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCAGACAGCCAGGATCGAC
* * * * * *
13212109 AGCACGTAGGGGGAGACCGGGCCAGTCCTCGACTTGTGCATTCTACCTCTCC-ATCCGGTTGAGT
66 AGCACGTAGGGGG-GACCGGGCCAATCC-CCACTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGC
* * * * *
13212173 GCCCGTACGCTCGTTTCATGGGTTGGCTTAGACATACGAAGTTCGTTCCATGTCTAAG
128 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAAG
* * *
13212231 CATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAG-CAGCCA-GATTGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCAGACAGCCAGGATCGAC
* *
13212294 AGCACGTA-GGGGGACCGGGCCAATCCCCATCTTGCACATTCTGCCTCTCCGACCTGCTGAGCGC
66 AGCACGTAGGGGGGACCGGGCCAATCCCCA-CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * *
13212358 CCGCACGCTCGTTTCATGGGTTGACTTTGGCATATGGAGTTCATCCCCA-GTCTAAG
130 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCAT-CCCATGTCTAAG
* * * * *
13212414 CATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTG-TGACAG-CAGGATCGAT
1 CATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCAGACAGCCAGGATCGAC
* * * * * * * **
13212477 AGCATGTAGGAGTGACTGGGTCGATCCCCAACTTGCGCATTCTGCCTCTCAG-TTGGCTGAGCGC
66 AGCACGTAGGGGGGACCGGGCCAATCCCC-ACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * * *
13212541 CCGTACGC-CTGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
130 CCGCACGCTC-GTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAAG
*
13212597 CATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGTAGGACTAGCAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTT--G-C---A-GAC-AGC--
* * *
13212662 CAGGATCGACAGCACGTAGGGGGGACCGGGCCAATCCCTAGTTTACGCATTCTGCCTCTCCGATC
56 CAGGATCGACAGCACGTAGGGGGGACCGGGCCAATCCCCA-CTT--G----C-GCAT-T-C--T-
* * * * *
13212727 GGCCTCTCCGACCGGCTGAGCACCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACGTAGTTC
108 -GCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTC
*
13212792 ATCCCCA-GTTTAAG
172 AT-CCCATGTCTAAG
* * ** *
13212806 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCGGTA-A--CAGGATCGA
1 CATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCAG-ACAGCCAGGATCGA
** * * * *
13212868 CAGCACGTAGGGGGGACCGGGCGGATCCCCGACTTGTGCATTCTACCTCTTCGGCCGGCTGAGCG
65 CAGCACGTAGGGGGGACCGGGCCAATCCCC-ACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * * * * * * * * *
13212933 CCCACACACCCATTTCGTGGGTT-AGGTTAGGCTTAGGGAGTTCATTCCATGTCTAAG
129 CCCGCACGCTCGTTTCATGGGTTGA-CTTAGGCATACGAAGTTCATCCCATGTCTAAG
13212990 C
1 C
13212991 CCTAGCCGAA
Statistics
Matches: 611, Mismatches: 105, Indels: 89
0.76 0.13 0.11
Matches are distributed among these distances:
182 9 0.01
183 238 0.39
184 101 0.17
185 58 0.09
186 3 0.00
188 1 0.00
189 1 0.00
190 3 0.00
191 3 0.00
192 2 0.00
194 1 0.00
195 34 0.06
197 39 0.06
198 1 0.00
201 2 0.00
202 4 0.01
203 2 0.00
204 1 0.00
206 2 0.00
207 1 0.00
208 8 0.01
209 94 0.15
210 3 0.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (185 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCAGACAGCCAGGATCGAC
AGCACGTAGGGGGGACCGGGCCAATCCCCACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAAG
Found at i:13212417 original size:26 final size:26
Alignment explanation
Indices: 13212387--13212439 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13212377 GTTGACTTTG
* *
13212387 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
13212413 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
13212439 G
1 G
13212440 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:13212599 original size:26 final size:26
Alignment explanation
Indices: 13212570--13212622 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13212560 GTTGGCTTAG
13212570 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
13212596 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13212622 G
1 G
13212623 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13212816 original size:26 final size:26
Alignment explanation
Indices: 13212779--13212831 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13212769 GTTGACTTAG
* *
13212779 GCATACGTAGTTCATCCCCAGTTTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
13212805 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13212831 G
1 G
13212832 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13213253 original size:158 final size:156
Alignment explanation
Indices: 13212805--13213297 Score: 499
Period size: 158 Copynumber: 3.1 Consensus size: 156
13212795 CCCAGTTTAA
* * *
13212805 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCGGTAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-ACC-GACCAAGGGTTGCGGTAGCAGGATCGACA
* * *
13212870 GCACGTAGGGGGGACCGGGCGGATCCCCGACTTGTGCATTCTACCTCTTCGGCCGGCTGAGCGCC
64 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTACCTCTTCGGCCGGCTGAGCGCC
* * *
13212935 C-ACACACCCATTTCGTGGGTT-AGGTTAG
129 CGA-ACGCTCATTTCGTGGGTTGA-CTTAG
* * ** * * * *
13212963 GCTTAGGGAGTTCATT-CCATGTCTAAGCCCTAGCCGAACCAAGGGTTGTGGCAGC-GAGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AACCG-ACCAAGGGTTGCGGTAGCAG-GATCGA
* * * * * * *
13213026 CAGCACGCAGAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGC
62 CAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTACCTCTTCGGCCGGCTGAGC
* *
13213091 GCCCGAACGCTCATTTTGTAGGTTGACTTAG
126 GCCCGAACGCTCATTTCGTGGGTTGACTTAG
* * *
13213122 GCATACGGAGTTCATTCCCAGCCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AACC-GACCAAGGGTTGCGGTAGCAGGATCGACA
* * * * * * *
13213187 ACACACAGGGGGGACTGGGCCGATCCCTGGCTTGTGCATTCTACCTCTCCGGCCTGCTGAGTGCC
64 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTACCTCTTCGGCCGGCTGAGCGCC
* ** *
13213252 CGCACGCTTGTTTCGTGGGTTGGCTTAG
129 CGAACGCTCATTTCGTGGGTTGACTTAG
13213280 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
13213298 ATGTCTAGGC
Statistics
Matches: 267, Mismatches: 58, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
157 5 0.02
158 136 0.51
159 119 0.45
160 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAACCGACCAAGGGTTGCGGTAGCAGGATCGACAGC
ACGCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTACCTCTTCGGCCGGCTGAGCGCCCG
AACGCTCATTTCGTGGGTTGACTTAG
Found at i:13213529 original size:26 final size:26
Alignment explanation
Indices: 13213493--13213545 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13213483 GTTGACTTAG
*
13213493 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13213519 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13213545 G
1 G
13213546 ATCGCACAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13214881 original size:159 final size:160
Alignment explanation
Indices: 13214523--13215067 Score: 555
Period size: 159 Copynumber: 3.4 Consensus size: 160
13214513 CTTCTCTGGT
* * * *
13214523 CGGCTGAGTGCCCGCACACACGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
1 CGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * ** * * * *
13214588 AGCCCCAACCAGACCA-AGGGTTGTGGCAGCAGGACCGGCAATATGCAAAGGGGGATC-AGGCCG
66 AGCCCCAATCGGACCAGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCGA-GTCG
*
13214651 ATCCCTGGCTTGCGTATTATGCCTCTCCGA-
130 ATCCCTGGCTTGCGCATTATGCCTCTCCGAC
* * * * *
13214681 CGGACTGAGCGCCCGCACGCCCGTTTCGTGGGTAGGCTTAGGCATAGGGAGTTAATTCCATGTCT
1 CGG-CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * *
13214746 AAGCCCCAATCGGA-CAGAAGGTTGTGGCAACGGGACCGGCAGCACGCAGAGGGGGACCGAGTCG
65 AAGCCCCAATCGGACCAGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCGAGTCG
*
13214810 ATCCCAGGCTTGCGCATTATGCCTCTCCGAC
130 ATCCCTGGCTTGCGCATTATGCCTCTCCGAC
* ** **
13214841 CGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGATTTAGGCATACAAAGTTCATTCCCA-GTCT
1 CGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCT
***** * ** * ** *
13214905 AAGATTGGATCGGATC-GAGGGTTACGGCAGCAGGATCGATAGCACGCAG-GGGGGTACCGGGTC
65 AAGCCCCAATCGGACCAGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGG-ACCGAGTC
* * * * ** *
13214968 GGTCTCTGACTTGCGCATTCTGCCTCTTTGGC
129 GATCCCTGGCTTGCGCATTATGCCTCTCCGAC
* * * *
13215000 CGGTTGAGTGCTCGCATGCTCGTTTCGTGGGTTGGCCTAGGCATACGGAGTTCATTCCATGTCTA
1 CGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
13215065 AGC
66 AGC
13215068 ATACGGAGTT
Statistics
Matches: 318, Mismatches: 61, Indels: 15
0.81 0.15 0.04
Matches are distributed among these distances:
158 13 0.04
159 297 0.93
160 8 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (160 bp):
CGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
AGCCCCAATCGGACCAGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCGAGTCGA
TCCCTGGCTTGCGCATTATGCCTCTCCGAC
Found at i:13215069 original size:26 final size:26
Alignment explanation
Indices: 13215040--13215092 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13215030 GTTGGCCTAG
13215040 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13215066 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13215092 G
1 G
13215093 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13215803 original size:159 final size:158
Alignment explanation
Indices: 13215433--13216092 Score: 648
Period size: 159 Copynumber: 4.2 Consensus size: 158
13215423 CCTAGTCTAA
* * * * * * *
13215433 GCATATGGAGTTCATTCCTTATCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGATCGATA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGACA
* * * * * * *
13215498 GCACACAGGGGGGACCGGGTCGATCCCCGGCTTGCTCATTCTGCCTCTTCGGTCGGTTGAGCGAC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAACGCC
* **
13215563 CGCACGC-CTGTTTCATTTGTTGGCTTAG
131 CGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * ** * * ** * * *
13215591 GCATAGGGAGTTCATTCAATGTCTAAGCCCCAG-CCAAACCGAGGTTTATGGTAGTGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGAC
* * * * ** * *
13215655 AGCACGCAGAGGGGGACCAGGTCGATCCCCGGTTTGCGCATTATGCCTCTTCTACCGGCTCAGCG
65 AGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAACG
*
13215720 CCCGCACGCTCGTTTCGTGGGTTGGCTTAT
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
13215750 GCATACAGAGTTCATTCC-TAGTCTAAGATTAGACGGGACCGAGGGTTGCGGTAGCAAGATCGAT
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGAC
* * * * *
13215814 AGCACGCAGGGGGGCACCGGGCCGGTCCCTGGCTTGTGCATTCTGCCTCTCCGGCCTGCTGAACG
65 AGCACGCAGGGGGG-ACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAACG
* * * *
13215879 CTCGTATGCTCGTTTCGTCGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
13215909 GCATACGGAGTTCATTCCATGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGTAGGATTGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGACA
* * * *
13215974 GCAC-CTA-GGGGGACTGGGCCGGTCCCCGACTTGCGCATTCTGCCTC-TCTGGCCGACTGAACG
66 GCACGC-AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTC-GGCCGGCTGAACG
*
13216036 CCAGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
13216066 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13216093 CATACAGAGT
Statistics
Matches: 402, Mismatches: 91, Indels: 19
0.79 0.18 0.04
Matches are distributed among these distances:
156 1 0.00
157 93 0.23
158 65 0.16
159 241 0.60
160 2 0.00
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAACGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13216102 original size:26 final size:26
Alignment explanation
Indices: 13216066--13216118 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13216056 GTTGGCTTAG
*
13216066 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13216092 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13216118 G
1 G
13216119 ATTTGGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13216816 original size:26 final size:26
Alignment explanation
Indices: 13216787--13216839 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13216777 GTTGACTTAG
13216787 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
13216813 GCATATAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13216839 G
1 G
13216840 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13217267 original size:11 final size:11
Alignment explanation
Indices: 13217251--13217283 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
13217241 CTCGGGGCAC
13217251 CATCGTCGGAG
1 CATCGTCGGAG
13217262 CATCGTCGGAG
1 CATCGTCGGAG
13217273 CATCGTCGGAG
1 CATCGTCGGAG
13217284 AGCCTAACCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:13217890 original size:26 final size:26
Alignment explanation
Indices: 13217853--13217905 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13217843 GTTGACTTAG
13217853 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
13217879 GCATAC-GAAGTTCATTCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
13217905 G
1 G
13217906 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:13218734 original size:26 final size:26
Alignment explanation
Indices: 13218705--13218757 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13218695 GTTGACTTAG
13218705 GCATACGGAGTTCATGCCCAATCTAA
1 GCATACGGAGTTCATGCCCAATCTAA
* *
13218731 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAATCTAA
13218757 G
1 G
13218758 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATGCCCAATCTAA
Found at i:13219092 original size:159 final size:159
Alignment explanation
Indices: 13218929--13219233 Score: 339
Period size: 159 Copynumber: 1.9 Consensus size: 159
13218919 CAGCCAGACC
* * * *
13218929 GAGGGTTGTGGCAGC-GAGATCGAAAACACGCAGAGGGGGATCGGGCCAATCCCC-GACCTGTGC
1 GAGGGTTGCGGCAGCAG-GATCGAAAACACGCAGAGAGGGACCGGGCCAATCCCCAG-CCTGCGC
* * * *
13218992 ATTATGCCTCT-TCGGCCAGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTATGCATACAG
64 ATTATACCTCTCT-GGCCAGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAG
13219056 AGTTCATTCC-TAGTCTAAGATCAGACCGGGCT
128 AGTTCATTCCAT-GTCTAAGATCAGACCGGGCT
* * * * * * *
13219088 GAGGGTTGCGGCAGCAGGATTGACAGCACTCAGAGAGGGACCGGGTCGATCCCCAGCTTGCGCAT
1 GAGGGTTGCGGCAGCAGGATCGAAAACACGCAGAGAGGGACCGGGCCAATCCCCAGCCTGCGCAT
* ** * * * *
13219153 TCTACCTCTCTGGCTGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATATAGAGT
66 TATACCTCTCTGGCCAGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGT
*
13219218 TGATTCCATGTCTAAG
131 TCATTCCATGTCTAAG
13219234 CATACGAAGT
Statistics
Matches: 119, Mismatches: 23, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
159 115 0.97
160 4 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
GAGGGTTGCGGCAGCAGGATCGAAAACACGCAGAGAGGGACCGGGCCAATCCCCAGCCTGCGCAT
TATACCTCTCTGGCCAGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGT
TCATTCCATGTCTAAGATCAGACCGGGCT
Found at i:13225885 original size:159 final size:158
Alignment explanation
Indices: 13225648--13226087 Score: 453
Period size: 159 Copynumber: 2.8 Consensus size: 158
13225638 AGGATCGGTG
* * * * *
13225648 GCATGCAG-GGGGGACTGGGCCAATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTAACCGC
1 GCATGCAGAGGGGGAC-GGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTAAGCAC
* * * * * *
13225712 CCGTACGCCCGTTTCGTGGGTTCGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAG-CT
65 CCGCACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACC
** ** *
13225776 GGACCGAGGGTTGTGGTAGTGGGA-CAGGCA
129 GGACCGAGGGTTGCAGTAGCAGGATC-GACA
* * * *
13225806 GCATGCAGAGGGGGATCGGGTCGATCCCTGGCTTACGCATTATGCCTCTCCGATCGACTCAGCAC
1 GCATGCAGAGGGGGA-CGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTAAGCAC
* * *
13225871 CCGCACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCTCA-GTCTAAG-ATCGGAC
65 CCGCACGCTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTTCATTC-CATGTCTAAGCACCAGAC
*
13225934 CGGACCGAGGGTTGCAGTAGCAGGATCGATA
128 CGGACCGAGGGTTGCAGTAGCAGGATCGACA
* ** * * *
13225965 GCACGCA-AGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCC-AACTGGTTGAGC
1 GCATGCAGA-GGGGGA-CGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGATC-GGCTAAGC
* *
13226028 ACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
63 ACCCGCACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13226088 TACAGAGTTC
Statistics
Matches: 234, Mismatches: 37, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
158 16 0.07
159 212 0.91
160 6 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATGCAGAGGGGGACGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTAAGCACC
CGCACGCTCGTTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGG
ACCGAGGGTTGCAGTAGCAGGATCGACA
Found at i:13226089 original size:26 final size:26
Alignment explanation
Indices: 13226059--13226111 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13226049 GTTGGCTTAG
*
13226059 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13226085 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13226111 G
1 G
13226112 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13226466 original size:26 final size:26
Alignment explanation
Indices: 13226427--13226479 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13226417 GTTGACTTAG
*
13226427 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAATTCATCCCCAATCTAA
* *
13226453 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATCCCCAATCTAA
13226479 G
1 G
13226480 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAATCTAA
Found at i:13226952 original size:26 final size:26
Alignment explanation
Indices: 13226899--13226954 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
13226889 TAGGTTGGCT
*
13226899 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCATATC
13226925 TAAGCATACGGAGTTCATTCCCA-ATC
1 TAAGCATACGGAGTTCATT-CCATATC
13226951 TAAG
1 TAAG
13226955 ATTTTGAGCG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCATATC
Found at i:13227542 original size:26 final size:26
Alignment explanation
Indices: 13227505--13227557 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13227495 GATGACTTAG
*
13227505 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13227531 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13227557 G
1 G
13227558 ACCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13228788 original size:26 final size:26
Alignment explanation
Indices: 13228739--13228791 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13228729 GTTGACTTAG
*
13228739 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCACAGTCTAA
* * *
13228765 GCATATGGAGTTCATTCACTGTCTAA
1 GCATATGAAGTTCATCCACAGTCTAA
13228791 G
1 G
13228792 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGAAGTTCATCCACAGTCTAA
Found at i:13229171 original size:159 final size:158
Alignment explanation
Indices: 13228765--13229266 Score: 483
Period size: 159 Copynumber: 3.2 Consensus size: 158
13228755 CCCAGTCTAA
* * * * * *
13228765 GCATATGGAGTTCATTCACTGTCTAAGATCGGATCGGACCGAA-AGTTGCGACAACAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACC-AAGGGTTGCGACAGCAGGATCGAT
* * * * *
13228829 AGTACG-TAGGGGGACTGGGTCGATCCCTAACTTGTGCATTCTGCTTCTCCGACCGGCTGAGCGC
65 AGCACGCAAGGGGGACTGGGTCGATCCCTAGCTTGTGCATTCTGCCTCTCCGACTGGCTGAGCGC
* * *
13228893 CCGCACACCCGTTTCATGGGTCGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * ** * * * *
13228922 GCATAGGGAGTTAATT-TCATGTCTAAGCCCCAG-TCGGACCAAGGGTTGTGGCAGCGGGATTGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCAAGGGTTGCGACAGCAGGATCGA
* * * * * * *
13228985 CAGCACGCAGAGGGGGA-TCGAGTCGATCCCTGGCTTGTGCATTATGCCTCTTCGGCTGGCTCAG
64 TAGCACGCA-AGGGGGACT-GGGTCGATCCCTAGCTTGTGCATTCTGCCTCTCCGACTGGCTGAG
* * ** *
13229049 TGCCCGCATGCTTATTTCATGGGTTGACTTAG
127 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
13229081 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGACAGCAGGATCGATA
* * ** * * *
13229146 GCACGCAAGGAGGGACTGGGCCGATCCCCAGCTTACGCATTCTACCTCCCCGACTGGCTGAGCAC
66 GCACGCAAGG-GGGACTGGGTCGATCCCTAGCTTGTGCATTCTGCCTCTCCGACTGGCTGAGCGC
* *
13229211 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
13229240 GCATACAGAGTTCATTCCAAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
13229267 CATACGGAGT
Statistics
Matches: 268, Mismatches: 67, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
156 3 0.01
157 47 0.18
158 9 0.03
159 206 0.77
160 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGACAGCAGGATCGATA
GCACGCAAGGGGGACTGGGTCGATCCCTAGCTTGTGCATTCTGCCTCTCCGACTGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:13229276 original size:26 final size:26
Alignment explanation
Indices: 13229240--13229292 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13229230 GTTGGCTTAG
13229240 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
* *
13229266 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
13229292 G
1 G
13229293 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:13229480 original size:26 final size:26
Alignment explanation
Indices: 13229450--13229502 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13229440 GTTGACTTAG
13229450 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13229476 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13229502 G
1 G
13229503 ATCGAATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13230355 original size:26 final size:26
Alignment explanation
Indices: 13230318--13230370 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13230308 GTTAGCTTAG
13230318 GCATACGAAGTTCTTT-CCATGTCTAA
1 GCATACGAAGTTCTTTCCCA-GTCTAA
*
13230344 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCTTTCCCAGTCTAA
13230370 G
1 G
13230371 AGTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCTTTCCCAGTCTAA
Found at i:13231277 original size:159 final size:155
Alignment explanation
Indices: 13231010--13231683 Score: 401
Period size: 159 Copynumber: 4.3 Consensus size: 155
13231000 TGGCTGAGCA
* * * * * ** *
13231010 CCCGCACGCTAGTTTTGTGGGTTGACTTAGGCATAGGGAGATCATTCCATGTCTAAGCCCTAG-G
1 CCCGCACGCTCGTTTCGTGGGTTGACTTACGCATA-CGAGTTCATTCCA-GTCTAAGATC-AGAC
* * ** * * * * * *
13231074 CGGATCGAGGGTTGTGGTAGCGGGATTGATAGCATGCAGAGGGGGATCAGGTCGATCCTCAGCTT
63 CAGACCGAGGGTTGTGACAGCAGGACTGACAACACGCAGAGGGGGATC-GGTCGATCCTCGGCTT
* *
13231139 GTGCATTATGCCTCTTCGATCGGTTCAGTG
127 GCGCATTATGCCTCTTCGATCGGTT-AGCG
* * * * *
13231169 CCCGTACGCTTGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAGATCGGACC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTACGCATAC-GAGTTCATT-CCAGTCTAAGATCAGACC
* *
13231234 AGACCGAGGGTTGTGACAGCAGGA-TCGACAACACGCA-AGGGGGGACCGGGTC-ATTCCCCGGC
64 AGACCGAGGGTTGTGACAGCAGGACT-GACAACACGCAGA-GGGGGATC-GGTCGA-TCCTCGGC
* * **
13231296 TTGCACATTCTGCCTCTTCGGCCGGTTGAGCG
125 TTGCGCATTATGCCTCTTCGATCGGTT-AGCG
* * * * * ** *
13231328 CCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-TC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTACGCATA-CGAGTTCATTCCA-GTCTAAG-ATCAGAC
* * ** * * * *
13231392 CGGACCGAGGGTTGTGACAGCGGGACTGGTAGCACGCAGAGAGGGATCGGGCTGATTCTCGGCTT
63 CAGACCGAGGGTTGTGACAGCAGGACTGACAACACGCAGAGGGGGATCGGTC-GATCCTCGGCTT
* * *
13231457 GCGTATTATGCCTCTTCGTTCGACTTAGCG
127 GCGCATTATGCCTCTTCGATCG-GTTAGCG
* * *
13231487 CTCGCACGCTCGTTTCGTGGGTTGACTTACGCATACGAACTTCATTTCCAGTATAAGATCAGACC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTACGCATACG-AGTTCA-TTCCAGTCTAAGATCAGACC
* * * * * *
13231552 -GA---A------TGACAACAGGA-TCGACAGCACTCAG-GGGGGACCGGGCTGATCCCCGGCTT
64 AGACCGAGGGTTGTGACAGCAGGACT-GACAACACGCAGAGGGGGATCGGTC-GATCCTCGGCTT
* * * *
13231605 GCGCATTCTACCTCTCCGACCGGTTGAGCG
127 GCGCATTATGCCTCTTCGATCGGTT-AGCG
* * * * * *
13231635 TCCACACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTACGCATA-CGAGTTCATTCCA
13231684 TGTCAAGCAT
Statistics
Matches: 402, Mismatches: 93, Indels: 52
0.73 0.17 0.10
Matches are distributed among these distances:
147 7 0.02
148 76 0.19
149 19 0.05
155 1 0.00
158 15 0.04
159 270 0.67
160 14 0.03
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (155 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTACGCATACGAGTTCATTCCAGTCTAAGATCAGACCAG
ACCGAGGGTTGTGACAGCAGGACTGACAACACGCAGAGGGGGATCGGTCGATCCTCGGCTTGCGC
ATTATGCCTCTTCGATCGGTTAGCG
Found at i:13231685 original size:307 final size:310
Alignment explanation
Indices: 13231026--13231691 Score: 781
Period size: 318 Copynumber: 2.1 Consensus size: 310
13231016 CGCTAGTTTT
* * * * * *
13231026 GTGGGTTGACTTAGGCATAGGGAGATCATTCCATGTCTAAGCCCTAGGCGGATCGAGGGTTGTGG
1 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGA
* * * * *
13231091 TAGCGGGATTGATAGCATGCAGAGGGGGATCAGGTCGATCCTCAGCTTGTGCATTATGCCTCTTC
66 CAGCGGGACTGATAGCACGCAGAGAGGGATCAGGTCGATCCTCAGCTTGCGCATTATGCCTCTTC
* * * * * *
13231156 GATCGGTTCAGTGCCCGTACGCTTGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCAGT
131 GATCGCTTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTACGCATACAGACTTCATTCCCAGT
* * *
13231221 CTAAGATCGGACCAGACCGAGGGTTGTGACAGCAGGATCGACAACACGCAAGGGGGGACCGGGTC
196 ATAAGAT----CCAGACCGA--G--ATGACAACAGGATCGACAACACGCAAGGGGGGACCGGGTC
* * * * * *
13231286 ATTCCCCGGCTTGCACATTCTGCCTCTTCGGCCGGTTGAGCGCCCGCACGCCCGTTTT
253 ATTCCCCGGCTTGCACATTCTACCTCTCCGACCGGTTGAGCGCCCACACGCCCATTTC
*
13231344 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCCGGACCGAGGGTTGTGA
1 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGA
* * * * *
13231409 CAGCGGGACTGGTAGCACGCAGAGAGGGATC-GGGCTGATTCTCGGCTTGCGTATTATGCCTCTT
66 CAGCGGGACTGATAGCACGCAGAGAGGGATCAGGTC-GATCCTCAGCTTGCGCATTATGCCTCTT
* * * *
13231473 CGTTCGACTT-AGCGCTCGCACGCTCGTTTCGTGGGTTGACTTACGCATAC-GAACTTCATTTCC
130 CGATCG-CTTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTACGCATACAG-ACTTCATTCCC
* * *
13231536 AGTATAAGAT-CAGACCGA-ATGACAACAGGATCGACAGCACTC-AGGGGGGACCGGGCTGA-TC
193 AGTATAAGATCCAGACCGAGATGACAACAGGATCGACAACACGCAAGGGGGGACCGGG-TCATTC
* * *
13231597 CCCGGCTTGCGCATTCTACCTCTCCGACCGGTTGAGCGTCCACACGCTCATTTC
257 CCCGGCTTGCACATTCTACCTCTCCGACCGGTTGAGCGCCCACACGCCCATTTC
*
13231651 GTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTC-AAGC
1 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
13231692 ATACGGAGTT
Statistics
Matches: 301, Mismatches: 43, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
306 4 0.01
307 96 0.32
308 22 0.07
313 8 0.03
317 4 0.01
318 165 0.55
319 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (310 bp):
GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGA
CAGCGGGACTGATAGCACGCAGAGAGGGATCAGGTCGATCCTCAGCTTGCGCATTATGCCTCTTC
GATCGCTTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTACGCATACAGACTTCATTCCCAGT
ATAAGATCCAGACCGAGATGACAACAGGATCGACAACACGCAAGGGGGGACCGGGTCATTCCCCG
GCTTGCACATTCTACCTCTCCGACCGGTTGAGCGCCCACACGCCCATTTC
Found at i:13232717 original size:159 final size:159
Alignment explanation
Indices: 13232554--13232920 Score: 431
Period size: 158 Copynumber: 2.3 Consensus size: 159
13232544 CCCACAAGCC
* * * * *
13232554 CATTTCATGGGTTGGCTTAGGCATAGGGAATTCATTCCGTGTCTAAGCCA-CAGCT-GGACCGAG
1 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CATCAGATCAGACCGAG
* * * * * *
13232617 GGTTGAGGCATCAGGATTGACAGCACG-TAGAGGGGGATCGGGCCGATCCCCGGCTTGTGCGTTA
65 GGTTGAGACAGCAGGATCGACAGCA-GATAG-GGGGGACCAGGCCGATCCCCGACTTGTGCGTT-
*
13232681 T-GCCTCTCCGGCCGGCTCAGCGCCCGCACGCT
127 TCGCCTCTCCGGCCGGCTCAACGCCCGCACGCT
* * *
13232713 CATTTCATGGGTTGACTTAGCCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGATCAGACCGAG
1 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCATCAGATCAGACCGAG
*
13232776 GGTTGTGACAGCAGGATCGACAGCAGATAGGGGGGACCAGGCCGATCCCCGACTTGTGCGTTTCG
65 GGTTGAGACAGCAGGATCGACAGCAGATAGGGGGGACCAGGCCGATCCCCGACTTGTGCGTTTCG
* * * *
13232841 CTTCTCCGGTCGGCTGAACGTCCGCACGCT
130 CCTCTCCGGCCGGCTCAACGCCCGCACGCT
* * * *
13232871 CGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTGTAAGCAT
1 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
13232921 ACGGAGTTCA
Statistics
Matches: 174, Mismatches: 27, Indels: 14
0.81 0.13 0.07
Matches are distributed among these distances:
157 5 0.03
158 96 0.55
159 71 0.41
160 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATCAGATCAGACCGAGG
GTTGAGACAGCAGGATCGACAGCAGATAGGGGGGACCAGGCCGATCCCCGACTTGTGCGTTTCGC
CTCTCCGGCCGGCTCAACGCCCGCACGCT
Found at i:13232943 original size:26 final size:26
Alignment explanation
Indices: 13232891--13232943 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13232881 GTTGGCTTAG
* *
13232891 GCATATGGAGTTCATTCCATGTGTAA
1 GCATACGGAGTTCATTCCATGTCTAA
13232917 GCATACGGAGTTCATTTCCA-GTCTAA
1 GCATACGGAGTTCA-TTCCATGTCTAA
13232943 G
1 G
13232944 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:13233597 original size:158 final size:158
Alignment explanation
Indices: 13233115--13233619 Score: 511
Period size: 158 Copynumber: 3.2 Consensus size: 158
13233105 CCTAGTCTAA
* * * *
13233115 GCATACGGAGTTCATTCCCA-ATCTAAGATCAGATCAGACCGAGGGTTGCGGCAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * *
13233179 AGCACGTAGGGGGGATCGGGCCGATCCTCGGCTTACACATTCTACCTCTCCGGTCGGCTGAACTC
65 AGCACGCAGGGGGGACCGGGCCGATCCTTGGCTTACGCATTCTACCTCTCCGGTCGGCTGAACGC
*
13233244 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * *
13233273 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGATCGATGGTTGTGGTAGCGGGA-CCAG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGA-
* * * * * * * *
13233336 CAGCACGCAGAAGGGGACCGAGTCGATCCCTGGCTTACGCATTATGCCCTTTCGTGGGTCGGCTC
64 CAGCACGCAG-GGGGGACCGGGCCGATCCTTGGCTTACGCATTCT-ACCTCTC--CGGTCGGCT-
* *
13233401 G-ACGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
124 GAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** *
13233435 GCATATGGAGTTCATTCCGA-GTCTAAGATCAGACCGGACCGAGGGTTGCAATAGCAAGATCGAC
1 GCATACGGAGTTCATTCC-ATGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * *
13233499 AGCACGCAGGGGGGACCGGGCCGATCCTTGGCTTGCGCATTCTACATCTCCAG-CTAGCTGAACG
65 AGCACGCAGGGGGGACCGGGCCGATCCTTGGCTTACGCATTCTACCTCTCCGGTC-GGCTGAACG
* *
13233563 CCTGCACGCTCCTTTCGTGGGTTGGCATT-G
129 CCCGCACGCTCGTTTCGTGGGTTGGC-TTAG
13233593 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13233620 CATACGGAGT
Statistics
Matches: 275, Mismatches: 57, Indels: 30
0.76 0.16 0.08
Matches are distributed among these distances:
157 8 0.03
158 103 0.37
159 31 0.11
160 9 0.03
161 31 0.11
162 89 0.32
163 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCTTGGCTTACGCATTCTACCTCTCCGGTCGGCTGAACGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13233629 original size:26 final size:26
Alignment explanation
Indices: 13233593--13233645 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13233583 GTTGGCATTG
13233593 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
13233619 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
13233645 G
1 G
13233646 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:13234518 original size:26 final size:26
Alignment explanation
Indices: 13234488--13234540 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13234478 GTTCGCTTAG
*
13234488 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13234514 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13234540 G
1 G
13234541 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13234541 original size:184 final size:184
Alignment explanation
Indices: 13234231--13234563 Score: 463
Period size: 184 Copynumber: 1.8 Consensus size: 184
13234221 ATCACCCGTT
* ** *
13234231 CGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGTTGAGCGCCCGCACGTTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCTGCCTCTCTGGCCGGTTGAGCGCCCGCACGCCCGTTTCATGGGT
* * *
13234296 TGACATAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCAATCCCATTCTAAGATCG
66 TGACATAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCAATCCCAGTCTAAGATCA
*
13234361 GACCGGACCAAGGGTTGCGGTAGCAGTATCGGTAGCACGCAGAGGGGATCGAGC
131 GACCAGACCAAGGGTTGCGGTAGCAGTATCGGTAGCACGCAGAGGGGATCGAGC
* * * *
13234415 CGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGTGCTCGTACGCCCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATCCTGCCTCTCTGGCCGGTTGAGCGCCCGCACGCCCGTTTCATGGGT
* ** * *
13234480 TCG-CTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
66 T-GACATAGGCATACAGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCAATCCCAGTCTAAGAT
* *
13234543 CAGACCAGATCGAGGGTTGCG
129 CAGACCAGACCAAGGGTTGCG
13234564 ACAACAAGAC
Statistics
Matches: 128, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
183 3 0.02
184 124 0.97
185 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.25
Consensus pattern (184 bp):
CGATCCCCGGCTTGCGCATCCTGCCTCTCTGGCCGGTTGAGCGCCCGCACGCCCGTTTCATGGGT
TGACATAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCAATCCCAGTCTAAGATCA
GACCAGACCAAGGGTTGCGGTAGCAGTATCGGTAGCACGCAGAGGGGATCGAGC
Found at i:13235908 original size:26 final size:26
Alignment explanation
Indices: 13235871--13235922 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13235861 GTTGCCTTAG
*
13235871 GCATATGGAGTTCATTCCATG-TCTAA
1 GCATATGAAGTT-ATTCCATGTTCTAA
13235897 GCATATGAAGTTATTCCATGTTCTAA
1 GCATATGAAGTTATTCCATGTTCTAA
13235923 AGAATTGGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (26 bp):
GCATATGAAGTTATTCCATGTTCTAA
Found at i:13236259 original size:26 final size:26
Alignment explanation
Indices: 13236222--13236274 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13236212 GTTGACTTAG
13236222 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
13236248 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13236274 G
1 G
13236275 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13236698 original size:158 final size:156
Alignment explanation
Indices: 13236248--13236739 Score: 495
Period size: 159 Copynumber: 3.1 Consensus size: 156
13236238 CCCAGTCTAA
* * * *
13236248 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGAATC-AGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGACCAAGGGTTGCGGTAGGAG-ATCGA-A
* * * * * *
13236312 AGCACACAGGGGGGATCGGATCGATCCCCCGGCTTGCGCATTCTGCCTTTCTGGCCGACTGAGCT
63 AGCACGCAGGGGGGATCGGGTCGAT-CCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCG
* *
13236377 CCCGAACGCCTGTTTCGTGGGTTGGCTTAG
127 CCCGCACGCTTGTTTCGTGGGTTGGCTTAG
* * ** * * * *
13236407 GCATAGGGAGTTCATT-CCATGTATAAGCCCCAG-CCGAACCAAGGGTTGTGGTAGTGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACAG-ACCAAGGGTTGCGGTAG-GAGATCGA
* * * * * * * * * **
13236470 GAGCACGTATAGGGGGATCGGGTCGATCCCCAGCTTGCACATTATGACTCTCTGATCGGCTCAAT
62 AAGCACGCA-GGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGC
* *
13236535 GCCCGCACGCTTGTTTCGTGGGTTGACTTAT
126 GCCCGCACGCTTGTTTCGTGGGTTGGCTTAG
**
13236566 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCATTAGGAAGATCGAAA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGACCAAGGGTTGCGGTAGG-AGATCGAAA
* * *
13236631 GCATGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGGGCC
64 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCC
* **
13236696 CGCAGGCTCATTTCGTGGGTTGGCTTAG
129 CGCACGCTTGTTTCGTGGGTTGGCTTAG
13236724 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
13236740 GCATGTCTAA
Statistics
Matches: 263, Mismatches: 60, Indels: 21
0.76 0.17 0.06
Matches are distributed among these distances:
158 95 0.36
159 143 0.54
160 25 0.10
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGACCAAGGGTTGCGGTAGGAGATCGAAAGC
ACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCCCG
CACGCTTGTTTCGTGGGTTGGCTTAG
Found at i:13236761 original size:26 final size:25
Alignment explanation
Indices: 13236724--13236775 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
13236714 GTTGGCTTAG
* *
13236724 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACGAAGTTCATTCCA-GTCTAA
13236750 GCATACGAAGTTCATTCCAGTCTAA
1 GCATACGAAGTTCATTCCAGTCTAA
13236775 G
1 G
13236776 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAGTCTAA
Found at i:13237641 original size:26 final size:26
Alignment explanation
Indices: 13237605--13237657 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13237595 GTTGGCTTAG
13237605 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13237631 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13237657 G
1 G
13237658 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13238194 original size:881 final size:879
Alignment explanation
Indices: 13236548--13238287 Score: 2719
Period size: 881 Copynumber: 2.0 Consensus size: 879
13236538 CGCACGCTTG
13236548 TTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTT
1 TTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTT
** * * * * *
13236613 GCATTAGGAAGATCGAAAGCATGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTC
66 GCAGCAGGAAGATCGAAAGCATGCAGGGGAGACCGGCTCGATCCCCGGCTTACGCATTCTGACTC
* * * *
13236678 TCCGACCGGCTGAGGGCCCGCAGGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTGCA
131 TCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
*
13236743 TGTCTAAGCATACGAAGTTCATTCCAGTCTAAGATTTTGAGCCATGGTGCTCATGCTGGGCTTGG
196 TGTCTAAGCATACGAAGTTCATTCCAGTCTAAGATTTTGAGCCATGGTGCACATGCTGGGCTTGG
* *
13236808 GCATGTGCTAGTGTCATAATTTTTTCGCCCGGTGCACCATCGTCGGAGCATCGTCGGAGAGCTTA
261 GCATCTGCTAGTGTCA-AATTTTTTCGCCCGGTGCACCATCGTCGGAGCATCGTCGGAGAGCCTA
* * *
13236873 ACCGACGGCATTGAGGGTTCCGACGGTTGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGAT
325 ACCGACGGCATTGAGGGTTCCGACGATTGGGGGGGTCCGGGGGGTGTGCACACATGATGTGCGAT
*
13236938 GGGTGCTGATACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACCC
390 GGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
13237003 CCTTAAAGAGCATTTGACATTCTATAGGTTTGCTGCCAGTAGCGATTAAAGTGTCTGAAATGGGG
455 CCTTAAAGAGCATTTGACATTCTATAGGTTTGCTGCAAGTAGCGATCAAAGTGTCTGAAATGGGG
** **
13237068 ACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
520 ACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTGCGAGCATTTAGCTGAATTTTTTTGTGCA
* * * * *
13237133 AGCTAACAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAATTTT
585 AGCCAAAAAAAATACAAGGATCACCTCTACCAAAATTGGGGACAAAAATCTTTCTAAAAAAATTT
* *
13237198 TAAGAAATCCAGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCA
650 TAAAAAATCCAGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCA
* * * * *
13237263 TGAAACTTCACATGAACGCTTAGGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTAG
715 CGAAACTTCACATGAACGCTTAGGGGACCATTGAATAAATTTACAAGCCATAAAAATAGCATTAG
* *
13237328 CATGGCATAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTGCGCAT
780 CATGGCAAAAATATGAAGATGTGCTTGAACCCACCTACCACCC-TTCAATCCCCGGCTTGCGCAT
13237393 CCTGCCTCTCTGGTCGGTTGAGCGCCCGCACATTAT
844 CCTGCCTCTCTGGTCGGTTGAGCGCCCGCACATTAT
*
13237429 TTTCGTGGGTTGACTTAT-CTATACGGAGTTCATTGCCAGTCTAAGATCAGATCAGACCAAGGGT
1 TTTCGTGGGTTGACTTATGC-ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGT
** * *
13237493 TGTGGCAGGAAGATCGACAGCATGTAGGGGAGACCGGACT-GATCCCCGAG-TTACGCATTCTGA
65 TGCAGCAGGAAGATCGAAAGCATGCAGGGGAGACCGG-CTCGATCCCCG-GCTTACGCATTCTGA
*
13237556 CTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
128 CTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
*
13237621 CCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCATGGTGCACATGCTGGGC
193 CCATGTCTAAGCATACGAAGTTCATT-CCAGTCTAAGATTTTGAGCCATGGTGCACATGCTGGGC
*
13237686 TTGGGCATCTGCTGGTGCTGC-AATTCTTTT-GCCCGGTGCACCATCGTCGGAGCATCGTCGGAG
257 TTGGGCATCTGCTAGTG-T-CAAATT-TTTTCGCCCGGTGCACCATCGTCGGAGCATCGTCGGAG
* *
13237749 AGCCTAACC-AGCGGCATTGGGGGTTCCGATGATTGGGGGGG-CCGGGGGGTGTGCACACATGAT
319 AGCCTAACCGA-CGGCATTGAGGGTTCCGACGATTGGGGGGGTCCGGGGGGTGTGCACACATGAT
*
13237812 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
383 GTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
13237877 CACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCAAGTAGAC-ATCAAAGTGTCTG
448 CACACCCCCTTAAAGAGCATTTGACATTCTATAGGTTTGCTGCAAGTAG-CGATCAAAGTGTCTG
13237941 AAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTGCGAGCATTTAGCTGAATTTT
512 AAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTGCGAGCATTTAGCTGAATTTT
* *
13238006 TTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAAATTGGGGACAAAAATCTTTTTAA
577 TTTGTGCAAGCCAAAAAAAATACAAGGATCACCTCTACCAAAATTGGGGACAAAAATCTTTCTAA
* * *
13238071 AAAAATTTTAAAAAATCTC-GAA-CTGTAAAAAGGTTT-GAAAATCGTGAAAAATAGAAAACGGT
642 AAAAATTTTAAAAAATC-CAGAACCT-CAAAAA-GTTTCAAAAATCGTGAAAAATAGAAAACGGG
* *
13238133 TCATCTTGTCACGAAACTTCACATGAAGGCTTAGGGGACCATTGAATAAATTTACAAGCCATAAA
704 TCATCTTGCCACGAAACTTCACATGAACGCTTAGGGGACCATTGAATAAATTTACAAGCCATAAA
* *
13238198 AATAGCATTGGCATGGCAAAAATATGAAGATGTGCTTGAACCCACCTACCACCCTTCAATCTCCG
769 AATAGCATTAGCATGGCAAAAATATGAAGATGTGCTTGAACCCACCTACCACCCTTCAATCCCCG
* *
13238263 GCTTGCGCATCCTGGCTTTCTGGTC
834 GCTTGCGCATCCTGCCTCTCTGGTC
13238288 AGCTGAGTGC
Statistics
Matches: 785, Mismatches: 62, Indels: 25
0.90 0.07 0.03
Matches are distributed among these distances:
880 35 0.04
881 612 0.78
882 132 0.17
883 5 0.01
884 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (879 bp):
TTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTT
GCAGCAGGAAGATCGAAAGCATGCAGGGGAGACCGGCTCGATCCCCGGCTTACGCATTCTGACTC
TCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
TGTCTAAGCATACGAAGTTCATTCCAGTCTAAGATTTTGAGCCATGGTGCACATGCTGGGCTTGG
GCATCTGCTAGTGTCAAATTTTTTCGCCCGGTGCACCATCGTCGGAGCATCGTCGGAGAGCCTAA
CCGACGGCATTGAGGGTTCCGACGATTGGGGGGGTCCGGGGGGTGTGCACACATGATGTGCGATG
GGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGACATTCTATAGGTTTGCTGCAAGTAGCGATCAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAACGGTCACAAAATCTTCTCCACTGCGAGCATTTAGCTGAATTTTTTTGTGCAA
GCCAAAAAAAATACAAGGATCACCTCTACCAAAATTGGGGACAAAAATCTTTCTAAAAAAATTTT
AAAAAATCCAGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCAC
GAAACTTCACATGAACGCTTAGGGGACCATTGAATAAATTTACAAGCCATAAAAATAGCATTAGC
ATGGCAAAAATATGAAGATGTGCTTGAACCCACCTACCACCCTTCAATCCCCGGCTTGCGCATCC
TGCCTCTCTGGTCGGTTGAGCGCCCGCACATTAT
Found at i:13238881 original size:26 final size:26
Alignment explanation
Indices: 13238829--13238881 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13238819 GTTGGCTTAG
* *
13238829 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATATAA
13238855 GCATACGGAGTTCATTCCCA-ATATAA
1 GCATACGGAGTTCATT-CCATATATAA
13238881 G
1 G
13238882 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATATAA
Found at i:13239221 original size:26 final size:26
Alignment explanation
Indices: 13239185--13239234 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
13239175 TTGACTTAGA
13239185 CATACGGAGTTCATCCCCAGTCTAGG
1 CATACGGAGTTCATCCCCAGTCTAGG
* *
13239211 CATATGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTCATCCCCAGTCTA
13239235 AGATCAAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAGG
Found at i:13239361 original size:354 final size:354
Alignment explanation
Indices: 13238790--13239428 Score: 842
Period size: 354 Copynumber: 1.8 Consensus size: 354
13238780 TTGTCTGGCC
* * * * *
13238790 GGCTGAGTGCCCGTACACTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 GGCTGAATGCCCGTACACTCGTTTCGTGGGTTGACTTAGACATACGGAGTTCATCCCATGTCTAA
** * * *
13238855 GCATACGGAGTTCATTCCCAATATAAGATCGGATCGGACCGAGGGTTGCAGCAGTAGGATCGGTA
66 GCATACGGAGTTCATTCCCAATATAAGATCAAATCAGACCGAGGGTTACAGCAGTAGGATCGGCA
* * *
13238920 GCACGCAGGAGGGACCGAGCCGATCCCTGGCTTGCATGTTCTACCTCTCCGGTCGACTGAGTGCC
131 GCACGCAGGAGGGACCGAGCCGATCCCTGGCTTGCA-GTTCTACCTCTCCGGTAGACTAAGCGCC
* **
13238985 CGCACGCTCATTTCATGGGTTGGATTAGGCATACAGAGTTCATTCCATGTCTATTCCCCAGTCAG
195 CGCACGCTCATTTCATGGGTTGGATAAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAG
* *
13239050 ATCGAGGGTTGTGGCAGCAGGACTGACAGCAGGATCGGCAGCATGCAGAGGGGGACCGGGTTGAT
260 ACCGAGGGTTGTGGCAACAGGACTGACAGCAGGATCGGCAGCATGCAGAGGGGGACCGGGTTGAT
13239115 CCCCGGCTTGCGCATTATGCCTCTCCTACT
325 CCCCGGCTTGCGCATTATGCCTCTCCTACT
** *
13239145 GGCTGAATGCCCGTATGCTTGTTTCGTGGGTTGACTTAGACATACGGAGTTCATCCCCA-GTCTA
1 GGCTGAATGCCCGTACACTCGTTTCGTGGGTTGACTTAGACATACGGAGTTCAT-CCCATGTCTA
* * * * *
13239209 GGCATATGGAGTTCATTCCCAGTCTAAGATCAAA-CTAGA-CGAGGGTTACGGCAGTAGGATCGG
65 AGCATACGGAGTTCATTCCCAATATAAGATCAAATC-AGACCGAGGGTTACAGCAGTAGGATCGG
* *
13239272 CAGCACGCAGGGGGGACC-AGGCCGATCTCC-GGCTTACGCA-TTCTGCCTCTCCGGTAGACTAA
129 CAGCACGCAGGAGGGACCGA-GCCGATC-CCTGGCTT--GCAGTTCTACCTCTCCGGTAGACTAA
* * * **
13239334 GCGCCTGCACG-TCTGTTTCATGGGTTGGCTAAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
190 GCGCCCGCACGCTC-ATTTCATGGGTTGGATAAGGCATACAGAGTTCATTCCATGTCTAAGCCCC
* *
13239398 AGTCGGACCGAGGGTTGTGGCAACGGGACTG
254 AGTCAGACCGAGGGTTGTGGCAACAGGACTG
13239429 GTAGCACGCA
Statistics
Matches: 242, Mismatches: 35, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
353 3 0.01
354 149 0.62
355 84 0.35
356 6 0.02
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.24
Consensus pattern (354 bp):
GGCTGAATGCCCGTACACTCGTTTCGTGGGTTGACTTAGACATACGGAGTTCATCCCATGTCTAA
GCATACGGAGTTCATTCCCAATATAAGATCAAATCAGACCGAGGGTTACAGCAGTAGGATCGGCA
GCACGCAGGAGGGACCGAGCCGATCCCTGGCTTGCAGTTCTACCTCTCCGGTAGACTAAGCGCCC
GCACGCTCATTTCATGGGTTGGATAAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGA
CCGAGGGTTGTGGCAACAGGACTGACAGCAGGATCGGCAGCATGCAGAGGGGGACCGGGTTGATC
CCCGGCTTGCGCATTATGCCTCTCCTACT
Found at i:13239675 original size:158 final size:158
Alignment explanation
Indices: 13239207--13239710 Score: 468
Period size: 158 Copynumber: 3.2 Consensus size: 158
13239197 ATCCCCAGTC
* ** *
13239207 TAGGCATATGGAGTTCATTCCCA-GTCTAAGATCAAACTAGA-CGAGGGTTACGGCAGTAGGATC
1 TAGGCATACGGAGTTCATT-CCATGTCTAAGATCAAACCGGACCGAGGGTTACGGCAGTAGAATC
** * * * *
13239270 GGCAGCACGCAGGGGGGACCAGGCCGATCTCCGGCTTACGCATTCTGCCTCTCCGGTAGACTAAG
65 GGCAGCACGCAGGGGGGACTGGGCCGATCCCCGGCTTACGCATTCTGCCTTTCCGGTCGGCTAAG
* *
13239335 CGCCTGCACG-TCTGTTTCATGGGTTGGCT
130 CGCCCGCACGCTC-GTTTCGTGGGTTGGCT
* * ** * ** ** * *
13239364 AAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAACG-GGACT
1 TAGGCATACGGAGTTCATTCCATGTCTAAGATCAAACCGGACCGAGGGTTACGGC-A-GTAGAAT
* * * *
13239428 -GGTAGCACGCAGAGGGGGA-TCGGGTCGATCCCGGGCTTACGCATTATGCCTCTT-CGGTCGGC
64 CGGCAGCACGCAG-GGGGGACT-GGGCCGATCCCCGGCTTACGCATTCTGCCT-TTCCGGTCGGC
* * * **
13239490 TCAA-CACCCGCATGCTCGTATCGTGGGTTAACT
126 T-AAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
** **
13239523 TTTGCATACGGAGTTCATTCC-TAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGTAGAATC
1 TAGGCATACGGAGTTCATTCCAT-GTCTAAGATCAAACCGGACCGAGGGTTACGGCAGTAGAATC
* * * ** *
13239587 GACAGCACGTAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTTTCCGACCGGCTGAG
65 GGCAGCACGCAGGGGGGACTGGGCCGATCCCCGGCTTACGCATTCTGCCTTTCCGGTCGGCTAAG
*
13239652 TGCCCGCACGCTCGTTTCGTGGGTTGGCT
130 CGCCCGCACGCTCGTTTCGTGGGTTGGCT
*
13239681 TAGGCATACGGAGCTCATTCCATGTCTAAG
1 TAGGCATACGGAGTTCATTCCATGTCTAAG
13239711 CATAGGGAGT
Statistics
Matches: 267, Mismatches: 64, Indels: 31
0.74 0.18 0.09
Matches are distributed among these distances:
156 3 0.01
157 32 0.12
158 114 0.43
159 112 0.42
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
TAGGCATACGGAGTTCATTCCATGTCTAAGATCAAACCGGACCGAGGGTTACGGCAGTAGAATCG
GCAGCACGCAGGGGGGACTGGGCCGATCCCCGGCTTACGCATTCTGCCTTTCCGGTCGGCTAAGC
GCCCGCACGCTCGTTTCGTGGGTTGGCT
Found at i:13239724 original size:26 final size:26
Alignment explanation
Indices: 13239684--13239736 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13239674 GTTGGCTTAG
13239684 GCATACGGAGCTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
* *
13239710 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
13239736 G
1 G
13239737 ATTTTGAGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:13240220 original size:26 final size:26
Alignment explanation
Indices: 13240184--13240233 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
13240174 TTGACTTAGG
13240184 CATATAGAGTTCA-TCCCTAGTCTATA
1 CATATAGAGTTCATTCCCT-GTCTATA
13240210 CATATAGAGTTCATTCCCTGTCTA
1 CATATAGAGTTCATTCCCTGTCTA
13240234 AGATCGGACC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (26 bp):
CATATAGAGTTCATTCCCTGTCTATA
Found at i:13241146 original size:26 final size:26
Alignment explanation
Indices: 13241110--13241162 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13241100 GTTGGCTTAG
13241110 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13241136 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13241162 G
1 G
13241163 AGTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13241870 original size:26 final size:26
Alignment explanation
Indices: 13241834--13241886 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13241824 GTTGACTTAG
13241834 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13241860 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13241886 G
1 G
13241887 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Done.