Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 94 of 402
Found at i:13242431 original size:158 final size:157
Alignment explanation
Indices: 13241998--13242432 Score: 435
Period size: 158 Copynumber: 2.7 Consensus size: 157
13241988 ATGCATTTCG
* * * * *
13241998 CCTCTCTGGCTTGTTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTGGGCATA-GAGAGTTCA
1 CCTCTCTGGCTGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG-GAGTTCA
** * * * * * *
13242062 TT-CCATGTCTAAGCCCCAGCCGGATCGAGGGATGTGGCAGCGGGACCGACAGCACGCAAAGGGG
65 TTCCCA-GTCTAAG-ATCAGACGGACCGAGGGTTGCGGCAGCAGGACCGATAGCACG-AAAGGGG
* *
13242126 GACCGGGCCGATCCCTGGCTTACGCATTATG
127 GACCGGGCCGATCCCTGGCTTACGCAATATA
* * * * * * *
13242157 CCTCTCCGGCTGGCTCAGCACCCGAAAGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
1 CCTCTCTGGCTGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
* * * * ** *
13242222 TCCCAGTCTAAGATCAGACTGAACTGAGGGTTGCGACAGTAGGATTGATAGCACG-TAGGGGGCA
66 TCCCAGTCTAAGATCAGAC-GGACCGAGGGTTGCGGCAGCAGGACCGATAGCACGAAAGGGGG-A
* * * * *
13242286 CCGGGTCGGTCCTTGGCTTGCGCAATCTA
129 CCGGGCCGATCCCTGGCTTACGCAATATA
*
13242315 CCTCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCTGGCTGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
* * * *
13242380 TCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGGTAGCAGGACCAATAGCA
66 TCCCAGTCTAAGATCAGA-CGGACCGAGGGTTGCGGCAGCAGGACCGATAGCA
13242433 GGATCGACAG
Statistics
Matches: 219, Mismatches: 52, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
157 6 0.03
158 125 0.57
159 84 0.38
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
CCTCTCTGGCTGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACGGACCGAGGGTTGCGGCAGCAGGACCGATAGCACGAAAGGGGGACC
GGGCCGATCCCTGGCTTACGCAATATA
Found at i:13242571 original size:26 final size:26
Alignment explanation
Indices: 13242535--13242587 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13242525 GTTGACTTAG
13242535 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13242561 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13242587 G
1 G
13242588 ATCTAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13242756 original size:26 final size:26
Alignment explanation
Indices: 13242720--13242772 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13242710 GTTAGCTTAG
13242720 GCATAAGGAGTTCATTCC-ATGTCTAA
1 GCATAAGGAGTTCATTCCTA-GTCTAA
*
13242746 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATTCCTAGTCTAA
13242772 G
1 G
13242773 AGTTTGAGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCTAGTCTAA
Found at i:13242762 original size:185 final size:184
Alignment explanation
Indices: 13242429--13242773 Score: 477
Period size: 185 Copynumber: 1.9 Consensus size: 184
13242419 CAGGACCAAT
* * *
13242429 AGCAGGATCGACAGCATGCAGGGGGGATCGGGTCAATCCTCGGCTTGCACATTCTGCCTTTTCGG
1 AGCAGGATCGACAGCACGCAGGGGGGATCGGGTCAATCCTCGACTTGCACATTCTACCTTTTCGG
* * *
13242494 TCGGCTGAGCGCCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
66 TCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATAAGGAGTTCATCCCCAGTCT
13242559 AAGCATACGGAGTTCATTCCCAGTCTAAGATCTAATCAGGTCGAGGGTTGTGGC
131 AAGCATACGGAGTTCATTCCCAGTCTAAGATCTAATCAGGTCGAGGGTTGTGGC
* * *
13242613 AGCAGGATC-AGCAGCACGCAGAGGGGGATCGGG-CTGATCCTCTACTTGCGCATTCTACCTCTT
1 AGCAGGATCGA-CAGCACGCAG-GGGGGATCGGGTC-AATCCTCGACTTGCACATTCTACCT-TT
* *
13242676 T-GG-CTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTT-AGCTTAGGCATAAGGAGTTCAT-TC
62 TCGGTC-GGCTGAGCGCCCGCACACTCATTTCGTGGGTTGA-CTTAGGCATAAGGAGTTCATCCC
*
13242737 CATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGA
125 CA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
13242774 GTTTGAGGCA
Statistics
Matches: 142, Mismatches: 12, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
183 1 0.01
184 24 0.17
185 114 0.80
186 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.26
Consensus pattern (184 bp):
AGCAGGATCGACAGCACGCAGGGGGGATCGGGTCAATCCTCGACTTGCACATTCTACCTTTTCGG
TCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATAAGGAGTTCATCCCCAGTCT
AAGCATACGGAGTTCATTCCCAGTCTAAGATCTAATCAGGTCGAGGGTTGTGGC
Found at i:13243827 original size:26 final size:26
Alignment explanation
Indices: 13243775--13243827 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13243765 GTTGGATTAG
* *
13243775 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATATAA
13243801 GCATACGGAGTTCATTCCCA-ATATAA
1 GCATACGGAGTTCATT-CCATATATAA
13243827 G
1 G
13243828 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATATAA
Found at i:13244925 original size:159 final size:159
Alignment explanation
Indices: 13244473--13245327 Score: 659
Period size: 159 Copynumber: 5.3 Consensus size: 159
13244463 GCATCCACAT
* * *
13244473 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTACGATCAGACCAGACTGA
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGA
* * * *
13244538 GGGTTGCGACAGTAGGATCGACAGCACGCAG-GGGGGATC-GGACCGATCCCCAGCTTGCGCATT
66 GGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCAGG-CCGATCCCCGGCTTGCGCATT
* * * * ** *
13244601 CTGCCTCTCAGACCGACTGAGTGCCTGCAC
130 ATGCCTCTCAGGCCGGCTCAACGCCCGCAC
* * * * * * ** * * *
13244631 ACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-GCATGTCTAAGCCCCAGCT-GGACC
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACT
* * * * ** * *
13244694 GA-GGTTGTGGTAGCGGGATCGGCAGCACGCAGAGGGGGACCAGGTTGATCCCCGACTTGCGTAT
64 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCAT
* * *
13244758 TATGCCTCTCTGGTCGGCTCAACGCCCGAAC
129 TATGCCTCTCAGGCCGGCTCAACGCCCGCAC
* *
13244789 GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAATCAGACTGA
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGA
* * * * *
13244854 GGGTTGTGGCAGCAGGATCGATAGCATGCAGAGGGGGACCAAGCCGATCCCCGGCTTACGCATTA
66 GGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTA
*
13244919 TGCCTCTCCGGCCGGCTCAACGCCCGCAC
131 TGCCTCTCAGGCCGGCTCAACGCCCGCAC
* *
13244948 GCTCGTTTCGTGGGTTGACTTAGGCAGACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-TCG
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACT-G
* * * * * * * * * * *
13245012 AGGGTTACGGTAGTAGGATCGATAGCAAGCAG-GTAGAGATCGGGTCGGTCCCCGGCTTGCGCAT
65 AGGGTTGCGGCAGCAGGATCGACAGCACGCAGAG-GGGGACCAGGCCGATCCCCGGCTTGCGCAT
* * * ** * * * *
13245076 TCTACTTCTGC-GATCGACTGAGCTCCCGCAC
129 TATGCCTCT-CAGGCCGGCTCAACGCCCGCAC
* * * *
13245107 GCTCGTTTCATGGGTTGGCTTAGGCGTACGAAGTTCATT-CCATGTCTAAGCCCCAGTCAGATCG
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG----A-TCAGATC-
** * * * ** * * *
13245171 AGGGTTGTGGCAGCTAGACCAGCAGCAGGATCGACAGCACTTAGAGGGGGATCGGGCTGATCCCC
59 A-GACTGAGG--G-TTG--CGGCAGCAGGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCC
* *** * *
13245236 GGCTTGTGCATTATGCCTCTCCTACCGGCTGAGCGCCCGCAC
118 GGCTTGCGCATTATGCCTCTCAGGCCGGCTCAACGCCCGCAC
* * *
13245278 GCTCATTTCGTGGATTTACTTAGGCATACGGAGTTCA-TCCCTAGTCTAAG
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAG
13245328 CATACGGAGT
Statistics
Matches: 543, Mismatches: 126, Indels: 43
0.76 0.18 0.06
Matches are distributed among these distances:
157 29 0.05
158 137 0.25
159 254 0.47
160 1 0.00
163 1 0.00
164 7 0.01
166 4 0.01
167 1 0.00
168 1 0.00
169 1 0.00
170 2 0.00
171 103 0.19
172 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGA
GGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTA
TGCCTCTCAGGCCGGCTCAACGCCCGCAC
Found at i:13245337 original size:26 final size:26
Alignment explanation
Indices: 13245301--13245353 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13245291 ATTTACTTAG
13245301 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
13245327 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13245353 G
1 G
13245354 ATCCGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13245633 original size:343 final size:352
Alignment explanation
Indices: 13244975--13245670 Score: 814
Period size: 355 Copynumber: 2.0 Consensus size: 352
13244965 ACTTAGGCAG
* * *
13244975 ACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGTAGTAGGATCGATAGCAA
1 ACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGTTACGGTAGCAGGATCGATAGCAA
* ** * * * *
13245040 GCAGGTAGAGATCGGGTCGGTCCCCGGCTTGCGCATTCTACTTCTGCGATCGACTGAGCTCCCGC
66 GCAGGTAGAGACCAAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGACTGAGCTCCCGC
* *
13245105 ACGCTCGTTTCATGGGTTGGCTTAGGCGTACGAAGTTCATTCCATGTCTAAGCCCCAGTCAGATC
131 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCAGAAC
*
13245170 GAGGGTTGTGGCAGCTAGACCAGCAGCAGGATCGACAGCACTTAGAGGGGGATCGGGCTGATCCC
196 GAGGGTTGTGGCAGCTAGACCAGCAGCA-GATC-ACAG-AC-TAGAGGGGGATCGAGCTGATCCC
* * * * *
13245235 CGGCTTGTGCATTATGCCTCTCCTACCGGCTGAGCGCCCGCACGCTCATTTCGTGGATTTACTTA
257 CGACTTGTGCATTATGCCTCTCCTACCGGCTCAGCGCCCGAACGCTCATTTCGTGGATTGACTAA
*
13245300 GGCATACGGAGTTCA-TCCCTAGTCTAAGCAT
322 GGCATACAGAGTTCATTCCC-AGTCTAAGCAT
*
13245331 ACGGAGTTCATTCCCAGTCTAAGATCCGATCGGACCGAAGGTTACGGTAGCAGGATC-AGTAGCA
1 ACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGTTACGGTAGCAGGATCGA-TAGCA
* * * * * **
13245395 TGCAGG-GGGGACCAAGCCGATCCCCGGCTTGCAG-ATTCTGCCTCTCCGGTCGGTTGAGCGT-C
65 AGCAGGTAGAGACCAAGCCGATCCCCGGCTTGC-GCATTCTACCTCTCCGATCGACTGAGC-TCC
* * * * *
13245457 CGCACG-TCCGTTTTATGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CC
128 CGCACGCT-CGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCA
* * * *
13245520 GAACTGAGGGTTTTGGTAG-TAGGACC-G-ATC-G-T-A-TG-C-AGAGGGGGATCGAGCTGATC
192 GAAC-GAGGGTTGTGGCAGCTA-GACCAGCAGCAGATCACAGACTAGAGGGGGATCGAGCTGATC
* * *
13245576 CTCGACTTGTGCATTATGCCTCTCC-AGTCGGCTCAGCGCCCGAACGCTCATTTCGTGGGTTGAC
255 CCCGACTTGTGCATTATGCCTCTCCTA-CCGGCTCAGCGCCCGAACGCTCATTTCGTGGATTGAC
13245640 TAAGGCATACAGAGTTCATTCCCAGTCTAAG
319 TAAGGCATACAGAGTTCATTCCCAGTCTAAG
13245671 ATCGGACTGG
Statistics
Matches: 293, Mismatches: 39, Indels: 29
0.81 0.11 0.08
Matches are distributed among these distances:
342 1 0.00
343 98 0.33
344 4 0.01
345 1 0.00
347 1 0.00
348 1 0.00
350 1 0.00
351 1 0.00
353 2 0.01
354 8 0.03
355 110 0.38
356 65 0.22
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (352 bp):
ACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGTTACGGTAGCAGGATCGATAGCAA
GCAGGTAGAGACCAAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGACTGAGCTCCCGC
ACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCAGAAC
GAGGGTTGTGGCAGCTAGACCAGCAGCAGATCACAGACTAGAGGGGGATCGAGCTGATCCCCGAC
TTGTGCATTATGCCTCTCCTACCGGCTCAGCGCCCGAACGCTCATTTCGTGGATTGACTAAGGCA
TACAGAGTTCATTCCCAGTCTAAGCAT
Found at i:13245830 original size:26 final size:26
Alignment explanation
Indices: 13245801--13245853 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13245791 ATTGGCTTAG
13245801 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
13245827 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13245853 G
1 G
13245854 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13246480 original size:11 final size:11
Alignment explanation
Indices: 13246464--13246489 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
13246454 CCCGAGGCAC
13246464 CATCGTCGGAG
1 CATCGTCGGAG
13246475 CATCGTCGGAG
1 CATCGTCGGAG
13246486 CATC
1 CATC
13246490 ACCGGAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:13247105 original size:26 final size:26
Alignment explanation
Indices: 13247075--13247127 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13247065 GTTGACTTAG
13247075 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13247101 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13247127 G
1 G
13247128 ATCGAACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13247637 original size:159 final size:158
Alignment explanation
Indices: 13247229--13247639 Score: 412
Period size: 159 Copynumber: 2.6 Consensus size: 158
13247219 CGACTAAGCG
* * * *
13247229 CCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAATTCATTCCATGTCTAAGCCCCAGTC
1 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAG-CCCAGTC
* * ** **
13247294 GAACCAAGGGTTGTGGCAG-TGAGACCGATAGCACATAGAGAGGGATTGGGTCGATCCCCGGCTT
65 GAACCGAGGGTTGTGGCAGCTG-GATCGATAGCACATAGAGAGGGATCAGACCGATCCCCGGCTT
* ** *
13247358 GCGCATTATGCCTCTCCGACTGGCTCAACG
129 GCACATTATGCCTCTCCGACCAGCTCAACA
* *** *
13247388 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAA-TCTAAAATCAGAC
1 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAAGTCTAAGCCCAGTC
* * ** * * * * * *
13247452 GGGACTGAGGGTTGTGATAGCAGGATCGATAGTACGTAGAGGGGGATCAGACCGGTCCTCGGCTT
65 -GAACCGAGGGTTGTGGCAGCTGGATCGATAGCACATAGAGAGGGATCAGACCGATCCCCGGCTT
* * * * * *
13247517 GCACATTCTGCCTCTCTGGCCAGTTGAGCA
129 GCACATTATGCCTCTCCGACCAGCTCAACA
* *
13247547 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCTAGTC
1 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCC-AGTC
* *
13247612 AAACCGAGGGTTATGGCAGCTGGATCGA
65 GAACCGAGGGTTGTGGCAGCTGGATCGA
13247640 CAGTGGGATC
Statistics
Matches: 198, Mismatches: 49, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
158 8 0.04
159 183 0.92
160 7 0.04
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCAGTCG
AACCGAGGGTTGTGGCAGCTGGATCGATAGCACATAGAGAGGGATCAGACCGATCCCCGGCTTGC
ACATTATGCCTCTCCGACCAGCTCAACA
Found at i:13248291 original size:26 final size:26
Alignment explanation
Indices: 13248262--13248314 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13248252 GTTGACTTAG
*
13248262 GCATATGGAGTTCATCCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
13248288 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
13248314 G
1 G
13248315 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:13248413 original size:184 final size:184
Alignment explanation
Indices: 13248104--13248460 Score: 431
Period size: 184 Copynumber: 1.9 Consensus size: 184
13248094 GTTGACTTAG
* * * *
13248104 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACTAGACAGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTACGGTAGCAGGATCGACA
* * *
13248169 GCATGCAGGAGGGACCGAGCCAGTCCCCAGCTTCCGAATTCTGCCTCTTCGACTAGCTGAGCGTC
66 GCACGCAGGAGGGACCGAGCCAGTCCCCAGCTTACGAATTCTGCCTCTTCGACTAGCTGAGCGCC
* ** *
13248234 CGCATGCTTATTTCT-TGGGTTGACTTAGGCATATGGAGTTCATCCCCAGCCTAA
131 CGCACGCCCATTT-TATGGGTTGACTTAGGCATAAGGAGTTCATCCCCAGCCTAA
* *
13248288 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATC-GAGGGTTACGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CAGAGGGTTACGGTAGCAGGATCGAC
* * * *
13248352 AGCACGTA-GAGGAGACCGGGCC-GATCCCC-GATTTACGCATTCTGCCTC-TCTGA-TCAGCTG
65 AGCACGCAGGAGG-GACCGAGCCAG-TCCCCAG-CTTACGAATTCTGCCTCTTC-GACT-AGCTG
* *
13248412 AGCGCCCGCACGCCCGTTTTATGGGTTGGCTTAGGCATAAGGAGTTCAT
125 AGCGCCCGCACGCCCATTTTATGGGTTGACTTAGGCATAAGGAGTTCAT
13248461 TCTATGTTTA
Statistics
Matches: 147, Mismatches: 19, Indels: 14
0.82 0.11 0.08
Matches are distributed among these distances:
183 10 0.07
184 136 0.93
185 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTACGGTAGCAGGATCGACA
GCACGCAGGAGGGACCGAGCCAGTCCCCAGCTTACGAATTCTGCCTCTTCGACTAGCTGAGCGCC
CGCACGCCCATTTTATGGGTTGACTTAGGCATAAGGAGTTCATCCCCAGCCTAA
Found at i:13248741 original size:157 final size:157
Alignment explanation
Indices: 13248296--13248788 Score: 423
Period size: 158 Copynumber: 3.1 Consensus size: 157
13248286 AAGCATACGG
* * * ** *
13248296 AGTTCATTCCCA-GTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCAGGATCGACAGCACGTA
1 AGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGTCG-AGGATCGACAGCACGTA
* * ** * * * *
13248360 GAGGAGACCGGGCC-GATCCCCGATTTACGCATTCTGCCTCT-CTGATCAGCTGAGCGCCCGCAC
64 GGGGGGACCGGGCCAG-TCCCCGGCTTGCGCATTCTACCTCTCCTG-TCGGCTTAGCGCCCGCAC
* * *
13248423 GCCCGTTTTATGGGTTGGCTTAGGCA-T-AA
127 GCTCGTTTCATGGGTTGACTTAGGCATTCAA
* * ** * *
13248452 GGAGTTCATTCTATGTTTAAGCCCCAG-CCAGACCGAGGGTTGTGG-C-AGCGAGACTGATAGCA
1 --AGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGTGGTCGAG-GA-TC-GACAGCA
* * * * * * *
13248514 CGTAGAGGGGGATCGGGCCAATCCCCGGCTTGCACATTATACATCTCCGGCCGGCTTAGCGCCCG
60 CGTAG-GGGGGACCGGGCCAGTCCCCGGCTTGCGCATTCTACCTCTCCTGTCGGCTTAGCGCCCG
* *
13248579 TACGCTCATTTCATGGGTTGACTTA-GCATTCAA
124 CACGCTCGTTTCATGGGTTGACTTAGGCATTCAA
*
13248612 AGTTCATTCCCA-GTCTAAGATCAGACCAGACCAAGGGTTGTGGTCGTAGGATCGACAGCACGTA
1 AGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGTCG-AGGATCGACAGCACGTA
* * *
13248676 GGGGGGACCGAGCCAGTCCCCGGCTTGTGCATTCTACCTCTCCTGTCGGCTTAGCGCTCGCACGC
64 GGGGGGACCGGGCCAGTCCCCGGCTTGCGCATTCTACCTCTCCTGTCGGCTTAGCGCCCGCACGC
* * * *
13248741 TTGTTTCGTGGGTTGGA-TTAGGCATACAG
129 TCGTTTCATGGGTT-GACTTAGGCATTCAA
13248770 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
13248789 TATATGGAGT
Statistics
Matches: 262, Mismatches: 55, Indels: 36
0.74 0.16 0.10
Matches are distributed among these distances:
155 2 0.01
156 2 0.01
157 76 0.29
158 107 0.41
159 67 0.26
160 6 0.02
161 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
AGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGTCGAGGATCGACAGCACGTAGG
GGGGACCGGGCCAGTCCCCGGCTTGCGCATTCTACCTCTCCTGTCGGCTTAGCGCCCGCACGCTC
GTTTCATGGGTTGACTTAGGCATTCAA
Found at i:13249159 original size:26 final size:26
Alignment explanation
Indices: 13249129--13249181 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13249119 GTTGACTTAG
*
13249129 GCATATGGAGTTCATCCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
13249155 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
13249181 G
1 G
13249182 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:13249201 original size:867 final size:865
Alignment explanation
Indices: 13248224--13250545 Score: 3478
Period size: 867 Copynumber: 2.7 Consensus size: 865
13248214 TCTTCGACTA
* * * *
13248224 GCTGAGCGTCCGCATGCTTATTTCTTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGCCTAAG
1 GCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGCCTAAG
13248289 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCAGGATCGACAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCAGGATCGACAG
* * *
13248354 CACGTAGAGGAGACCGGGCCGATCCCCGATTTACGCATTCTGCCTCTCTGATCAGCTGAGCGCCC
131 CACGCAGAGGAGACCGGGCCGATCCCCGATTTACGCATTCTGCCTCTCCGATCAGCTAAGCGCCC
13248419 GCACGCCCGTTTTATGGGTTGGCTTAGGCATAAGGAGTTCATTCTATGTTTAAGCCCCAGCCAGA
196 GCACGCCCGTTTTATGGGTTGGCTTAGGCATAAGGAGTTCATTCTATGTTTAAGCCCCAGCCAGA
* *
13248484 CCGAGGGTTGTGGCAGCGAGACTGATAGCACGTAGAGGGGGATCGGGCCAATCCCCGGCTTGCAC
261 CCGAGGGTTGTGGCAGCGAGACTGATAGCACGCAGAGGGGGATCGGGCCAATCCCCGACTTGCAC
13248549 ATTATACATCTCCGGCCGGCTTAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGCATTCAAAG
326 ATTATACATCTCCGGCCGGCTTAGCGCCCG-ACGCTCATTTCATGGGTTGACTTAGCATTCAAAG
13248614 TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGTCGTAGGATCGACAGCACGTAGGG
390 TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGTCGTAGGATCGACAGCACGTAGGG
* *
13248679 GGGACCGAGCCAGTCCCCGGCTTGTGCATTCTACCTCTCCTGTCGGCTTAGCGCTCGCACGCTTG
455 GGGACCGAGCCAGTCCCCGGCTTGTGCATTCTGCCTCTCCTGCCGGCTTAGCGCTCGCACGCTTG
* *
13248744 TTTCGTGGGTTGGATTAGGCATACAGAGTTCATTCCATGTCTAAGTATATGGAGTTCGTTCCCAG
520 TTTCGTGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGTATATGGAGTTCATTCCCAG
*
13248809 TCTAAGGTCGGGCCGGACCAAGGGTTACGGCAGCAGCACCAGTAGCAGGATCAACAGCATGCAGG
585 TCTAAGGTCGGG-CGAACCAAGGGTTACGGCAGCAGCACCAGTAGCAGGATCAACAGCATGCAGG
*
13248874 GAGGACCGGACCAATCCCCGGCTTGCATATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCACGCTC
649 GAGGACCGGACCAATCCCCGGCTTACATATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCACGCTC
* *
13248939 GTTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTTTAAGCCCCAGTCAGATCGAGGGT
714 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGCCCCAGTCAGACCGAGGGT
13249004 TGTGGCAACAAGACCGACAGCGAGACCGGTAGCACGCATAGGGGGATCGGGCTGATCTCC-GACT
779 TGTGGCAACAAGACCGACAGCGAGACCGGTAGCACGCATAGGGGGATCGGGCTGATCTCCAG-CT
13249068 TGTGCATTATGCCTCTTCC-G-CC
843 TGTGCATTATGCCTC-TCCGGTCC
13249090 GACTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGCCTAA
1 G-CTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGCCTAA
13249155 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCAGGATCGACA
65 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCAGGATCGACA
* * * *
13249220 GCACGCAGAGGAAACCGGGCCGATCCCCAATTTACGTATTCTGCCTCTCCGATCGGCTAAGCGCC
130 GCACGCAGAGGAGACCGGGCCGATCCCCGATTTACGCATTCTGCCTCTCCGATCAGCTAAGCGCC
13249285 CGCACGCCCGTTTTATGGGTTGGCTTAGGCATAAGGAGTTCATTCTATGTTTAAGCCCCAGCCAG
195 CGCACGCCCGTTTTATGGGTTGGCTTAGGCATAAGGAGTTCATTCTATGTTTAAGCCCCAGCCAG
* * *
13249350 ACCGAGGGTTGTGGCAGCGAGACCGATAGCACGCGGAGGGGGATCGGGCTAATCCCCGACTTGCA
260 ACCGAGGGTTGTGGCAGCGAGACTGATAGCACGCAGAGGGGGATCGGGCCAATCCCCGACTTGCA
* * * *
13249415 CATTATGCATCTCTGGCCGGCTTAGCGCCCGCACGCTCATTTCATGGGTTAACTTAGCATTCAGA
325 CATTATACATCTCCGGCCGGCTTAGCGCCCG-ACGCTCATTTCATGGGTTGACTTAGCATTCAAA
*
13249480 GTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGTCGTAGGATCGATAGCACGTAGG
389 GTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGTCGTAGGATCGACAGCACGTAGG
*
13249545 GGGGACCGAGCCAATCCCCGGCTTGTGCATTCTGCCTCTCCTGCCGGCTTAGCGCTCGCACGCTT
454 GGGGACCGAGCCAGTCCCCGGCTTGTGCATTCTGCCTCTCCTGCCGGCTTAGCGCTCGCACGCTT
13249610 GTTTCGTGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGTATATGGAGTTCATTCCCA
519 GTTTCGTGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGTATATGGAGTTCATTCCCA
**
13249675 GTCTAAGGTCGGGCGAACTGAGGGTTACGGCAGCAGCACCAGTAGCAGGATCAACAGCATGCAGG
584 GTCTAAGGTCGGGCGAACCAAGGGTTACGGCAGCAGCACCAGTAGCAGGATCAACAGCATGCAGG
* * * *
13249740 GGGGACCGGACCAATCCTCGGCTTACGTATTCTGCCTCTCCAGTCGGCTGAGTGCCCGCACGCTC
649 GAGGACCGGACCAATCCCCGGCTTACATATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCACGCTC
*
13249805 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTTTAAGCCCCAGTCAGACCGAGGGT
714 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGCCCCAGTCAGACCGAGGGT
* *
13249870 TGTGGCAGCAAGACCGACAGCGGGACCGGTAGCACGCATAGGGGGATCGGGCTGATCTCCAGCTT
779 TGTGGCAACAAGACCGACAGCGAGACCGGTAGCACGCATAGGGGGATCGGGCTGATCTCCAGCTT
13249935 GTGCATTATGCCTCTCCGGTCC
844 GTGCATTATGCCTCTCCGGTCC
* * *
13249957 GCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAG
1 GCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGCCTAAG
** * * * * *
13250022 CATATAGAGTTCATTCCCAGCCTAAGATCGGACTGGACCGAGGGTTGCGGTAGTAGGATCGACAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCAGGATCGACAG
* * * * * *
13250087 CACGCAG-GAGAGATCGAGTCGATCCCCGAATTGCGCATTCTGCCTCTCCGA-CCGACTAAGCGC
131 CACGCAGAG-GAGACCGGGCCGATCCCCGATTTACGCATTCTGCCTCTCCGATCAG-CTAAGCGC
* * * * * * * *
13250150 CCACACGTCCATTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCG
194 CCGCACGCCCGTTTTATGGGTTGGCTTAGGCATAAGGAGTTCATTCTATGTTTAAGCCCCAGCCA
* ** * * * *
13250215 GACCGAAGGTTGTGGCAGCGAGACTGGCAGCACGCAGAAGGGGATCGGGTCGATCCCCGACTTAC
259 GACCGAGGGTTGTGGCAGCGAGACTGATAGCACGCAGAGGGGGATCGGGCCAATCCCCGACTTGC
* * * * * * * * * * *
13250280 GCATTTTACCTTTCCGACCGGCTCAGC-CAC-ACGCTCGTTTCGTGGGTTGACTTGGGCATACAA
324 ACATTATACATCTCCGGCCGGCTTAGCGCCCGACGCTCATTTCATGGGTTGACTT-AGCATTCAA
* * * ** * * * *
13250343 AGTTCGTTCCTAGTCTAAGATCTGACTGGATCGAA-GGTTGTGG-CAGCAAGATCGACAGCACGC
388 AGTTCATTCCCAGTCTAAGATCAGACCAGA-CCAAGGGTTGTGGTC-GTAGGATCGACAGCACGT
* *** * * * * *
13250406 AGGGGGGATCG-GGTTGATCCCCGACTTGTGCATTTTGCCTCT-CTGGCTGGCTGAGCGCCCGCA
451 AGGGGGGACCGAGCCAG-TCCCCGGCTTGTGCATTCTGCCTCTCCT-GCCGGCTTAGCGCTCGCA
* ** * * * * * *
13250469 CACTCATTTTGTAGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACGGAGTTCAT
514 CGCTTGTTTCGTGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGTATATGGAGTTCAT
13250534 TCCCAGTCTAAG
579 TCCCAGTCTAAG
13250546 ATTTTGAGCC
Statistics
Matches: 1324, Mismatches: 121, Indels: 24
0.90 0.08 0.02
Matches are distributed among these distances:
863 24 0.02
864 169 0.13
865 11 0.01
866 547 0.41
867 573 0.43
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (865 bp):
GCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGCCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCAGGATCGACAG
CACGCAGAGGAGACCGGGCCGATCCCCGATTTACGCATTCTGCCTCTCCGATCAGCTAAGCGCCC
GCACGCCCGTTTTATGGGTTGGCTTAGGCATAAGGAGTTCATTCTATGTTTAAGCCCCAGCCAGA
CCGAGGGTTGTGGCAGCGAGACTGATAGCACGCAGAGGGGGATCGGGCCAATCCCCGACTTGCAC
ATTATACATCTCCGGCCGGCTTAGCGCCCGACGCTCATTTCATGGGTTGACTTAGCATTCAAAGT
TCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGTCGTAGGATCGACAGCACGTAGGGG
GGACCGAGCCAGTCCCCGGCTTGTGCATTCTGCCTCTCCTGCCGGCTTAGCGCTCGCACGCTTGT
TTCGTGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGTATATGGAGTTCATTCCCAGT
CTAAGGTCGGGCGAACCAAGGGTTACGGCAGCAGCACCAGTAGCAGGATCAACAGCATGCAGGGA
GGACCGGACCAATCCCCGGCTTACATATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCACGCTCGT
TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGCCCCAGTCAGACCGAGGGTTG
TGGCAACAAGACCGACAGCGAGACCGGTAGCACGCATAGGGGGATCGGGCTGATCTCCAGCTTGT
GCATTATGCCTCTCCGGTCC
Found at i:13249640 original size:158 final size:157
Alignment explanation
Indices: 13249155--13249655 Score: 442
Period size: 158 Copynumber: 3.2 Consensus size: 157
13249145 CCCAGCCTAA
* * * ** * *
13249155 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGTCG-AGGATCGAT
* ** * * * * * * *
13249219 AGCACGCAGAGGAAACCGGGCCGATCCCCAATTTACGTATTCTGCCTCTCC-GATCGGCTAAGCG
64 AGCACGCAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCTG-CCGGCTTAGCG
* * *
13249283 CCCGCACGCCCGTTTTATGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGATTAG
* * * ** * *
13249313 GCATAAGGAGTTCATTCTATGTTTAAGCCCCAG-CCAGACCGAGGGTTGTGG-CAGCGAGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGTGGTC-GAG-GATCGA
* * * * * *
13249376 TAGCACGCGGAGGGGGATCGGGCTAATCCCCGACTTGCACATTATGCATCT-CTGGCCGGCTTAG
63 TAGCACGCAG-GGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCT-GCCGGCTTAG
* *
13249440 CGCCCGCACGCTCATTTCATGGGTT-AACTTA-
126 CGCCCGCACGCTCGTTTCATGGGTTGGA-TTAG
* * *
13249471 GCATTCAGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCAAGGGTTGTGGTCGTAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGTCG-AGGATCGAT
* * * *
13249535 AGCACGTAGGGGGGACCGAGCCAATCCCCGGCTTGTGCATTCTGCCTCTCCTGCCGGCTTAGCGC
64 AGCACGCAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCTGCCGGCTTAGCGC
* * *
13249600 TCGCACGCTTGTTTCGTGGGTTGGATTAG
129 CCGCACGCTCGTTTCATGGGTTGGATTAG
13249629 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13249656 TATATGGAGT
Statistics
Matches: 265, Mismatches: 62, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
157 75 0.28
158 124 0.47
159 65 0.25
160 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGTCGAGGATCGATAG
CACGCAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCTGCCGGCTTAGCGCCC
GCACGCTCGTTTCATGGGTTGGATTAG
Found at i:13250529 original size:26 final size:26
Alignment explanation
Indices: 13250493--13250545 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13250483 GTTGGCTTAG
*
13250493 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13250519 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13250545 G
1 G
13250546 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13252231 original size:557 final size:556
Alignment explanation
Indices: 13251192--13252748 Score: 2413
Period size: 557 Copynumber: 2.8 Consensus size: 556
13251182 GCATCCGCGT
** * * * * ** *
13251192 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCCAAGCATTCAAAATTCATT
1 GCTCGTTTTATGGGTTGACTTAGGTATACGGAGTTCATCCCCAGTCTAAGAAAT-GGAGTTCATT
* * ** * * * * *
13251257 CCCAGTCTAAGATCAGAC-CGAACTGAGGGTTGCGGTAGCAGAATCGACAGCACGCAGGGGGGAT
65 CCCAGTCTAAGATCAGACAGGATC-GAGGGTTGCGACAGTAGGATCGATAGCACGTAAGGGGGAT
* ** * * * * * * * **
13251321 CAGGCCGATCCCCAGCTTACGTATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGCCCATTTCG
129 CAAGTTGATCCTCGGCGTACGCATTCTGCCTCTCCGACCGATTAAATGCCCGCACGCCCATTTCG
13251386 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGAGTTGTTGC
194 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGAGTTGTTGC
13251451 AATGGGACCAGCAGCACGTAGAGGGGGATCGAGCTAATCCCCGACTTCCGCATTATGCCTCTCCA
259 AATGGGACCAGCAGCACGTAGAGGGGGATCGAGCTAATCCCCGACTTCCGCATTATGCCTCTCCA
13251516 ACCGGCCCAACGGCCACACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTA
324 ACCGGCCCAACGGCCACACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTA
13251581 TAAGATCGGATCGACTCGAGGGTTACAGGTGCAGGATCAACAGCACGTAGGGGGTCGGGCCGGTC
389 TAAGATCGGATCGACTCGAGGGTTACAGGTGCAGGATCAACAGCACGTAGGGGGTCGGGCCGGTC
*
13251646 CTCGACTTTCTTATTTGGCCTCTTCGGCCGGTTGAGTGCCCACACGCTCGTTTCATGGGTTGGCT
454 CTCGACTTTCTTATTCGGCCTCTTCGGCCGGTTGAGTGCCCACACGCTCGTTTCATGGGTTGGCT
13251711 TAGGCATTATACCTCTTCGGCTGGCTGAGCACCCACAC
519 TAGGCATTATACCTCTTCGGCTGGCTGAGCACCCACAC
13251749 GCTCGTTTTATGGGTTGACTTAGGTATACGGAGTTCATCCCCAGTCTAAGAAAATGGAGTTCATT
1 GCTCGTTTTATGGGTTGACTTAGGTATACGGAGTTCATCCCCAGTCTAAG-AAATGGAGTTCATT
*
13251814 CCCAGTCTAAGATCAGACAGGATCGAGGGTTACGACAGTAGGATCGATAGCACGTAAGGGGGATC
65 CCCAGTCTAAGATCAGACAGGATCGAGGGTTGCGACAGTAGGATCGATAGCACGTAAGGGGGATC
13251879 AAGTTGATCCTCGGCGTACGCATTCTGCCTCTCCGACCGATTAAATGCCCGCACGCCCATTTCGT
130 AAGTTGATCCTCGGCGTACGCATTCTGCCTCTCCGACCGATTAAATGCCCGCACGCCCATTTCGT
13251944 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGAGTTGTTGCA
195 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGAGTTGTTGCA
13252009 ATGGGACCAGCAGCACGTAGAGGGGGATCGAGCTAATCCCCGACTTCCGCATTATGCCTCTCCAA
260 ATGGGACCAGCAGCACGTAGAGGGGGATCGAGCTAATCCCCGACTTCCGCATTATGCCTCTCCAA
13252074 CCGGCCCAACGGCCACACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTAT
325 CCGGCCCAACGGCCACACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTAT
13252139 AAGATCGGATCGACTCGAGGGTTACAGGTGCAGGATCAACAGCACGTAGGGGGTCGGGCCGGTCC
390 AAGATCGGATCGACTCGAGGGTTACAGGTGCAGGATCAACAGCACGTAGGGGGTCGGGCCGGTCC
13252204 TCGACTTTCTTATTCGGCCTCTTCGGCCGGTTGAGTGCCCACACGCTCGTTTCATGGGTTGGCTT
455 TCGACTTTCTTATTCGGCCTCTTCGGCCGGTTGAGTGCCCACACGCTCGTTTCATGGGTTGGCTT
*
13252269 AGGCATTATACCTCTTCGGCTGGCTGAGCACCCGCAC
520 AGGCATTATACCTCTTCGGCTGGCTGAGCACCCACAC
13252306 GCTCGTTTTATGGGTTGACTTAGGTATACGGAGTTCATCCCCAGTCTAAGCAAATGGAGTTCATT
1 GCTCGTTTTATGGGTTGACTTAGGTATACGGAGTTCATCCCCAGTCTAAG-AAATGGAGTTCATT
13252371 CCCAGTCTAAGATCAGACAGGATCGAGGGTTGCGACAGTAGGATCGATAGCACGTAAGGGGGATC
65 CCCAGTCTAAGATCAGACAGGATCGAGGGTTGCGACAGTAGGATCGATAGCACGTAAGGGGGATC
* *
13252436 GAGTTGATCCTCGGCGTGCGCATTCTGCCTCTCCGACCGATTAAATGCCCGCACGCCCATTTCGT
130 AAGTTGATCCTCGGCGTACGCATTCTGCCTCTCCGACCGATTAAATGCCCGCACGCCCATTTCGT
* * * *
13252501 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCA
195 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGAGTTGTTGCA
* * * * * * * * *
13252566 GTGGGATC-GATAGCACGCAGAGGGGGGATCGGGCTAATCCCTGGC-TCAGCATTTTGCCTCTCC
260 ATGGGACCAG-CAGCACGTAGA-GGGGGATCGAGCTAATCCCCGACTTCCGCATTATGCCTCTCC
* * * * ** * * * * *
13252629 GACTGGCTCAGCATCCGCACACTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGT
323 AACCGGCCCAACGGCCACACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * *
13252694 CTAAGATCAGACTGGAC-CGAGGGTT-CCGGCAGCAGGATCGACAGTACGTAGGGGG
388 ATAAGATCGGA-TCGACTCGAGGGTTACAGG-TGCAGGATCAACAGCACGTAGGGGG
13252749 GATCGACAGC
Statistics
Matches: 926, Mismatches: 68, Indels: 12
0.92 0.07 0.01
Matches are distributed among these distances:
556 4 0.00
557 893 0.96
558 29 0.03
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (556 bp):
GCTCGTTTTATGGGTTGACTTAGGTATACGGAGTTCATCCCCAGTCTAAGAAATGGAGTTCATTC
CCAGTCTAAGATCAGACAGGATCGAGGGTTGCGACAGTAGGATCGATAGCACGTAAGGGGGATCA
AGTTGATCCTCGGCGTACGCATTCTGCCTCTCCGACCGATTAAATGCCCGCACGCCCATTTCGTG
GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGAGTTGTTGCAA
TGGGACCAGCAGCACGTAGAGGGGGATCGAGCTAATCCCCGACTTCCGCATTATGCCTCTCCAAC
CGGCCCAACGGCCACACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTATA
AGATCGGATCGACTCGAGGGTTACAGGTGCAGGATCAACAGCACGTAGGGGGTCGGGCCGGTCCT
CGACTTTCTTATTCGGCCTCTTCGGCCGGTTGAGTGCCCACACGCTCGTTTCATGGGTTGGCTTA
GGCATTATACCTCTTCGGCTGGCTGAGCACCCACAC
Found at i:13252716 original size:159 final size:156
Alignment explanation
Indices: 13252361--13252754 Score: 393
Period size: 159 Copynumber: 2.5 Consensus size: 156
13252351 CTAAGCAAAT
* *
13252361 GGAGTTCATTCCCAGTCTAAGATCAGACAGGATCGAGGGTTGCGACAGTAGGATCGATAGCACGT
1 GGAGTTCATTCCCAGTCTAAGATCAGAC-GGACCGAGGGTTGCGACAGTAGGATCGATAGCACGC
* * * *
13252426 AAGGGGGATCGAGTTGATCCTCGGCGTGCGCATTCTGCCTCTCCGACCGATTAAATGCCCGCACG
65 AAGGGGGATCGAGCTAATCCTCGGCGTGCGCATTCTGCCTCTCCGACCGATCAAAT-CCCGCACA
* ** *
13252491 CCCATTTCGTGGGTTGGCTTAGGCATAG
129 CCCATTTCATGGGTTAACTTAGGCATAC
** * * * *
13252519 GGAGTTCATT-CCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTGGGATCGATAGCACG
1 GGAGTTCATTCCCA-GTCTAAG-ATCAGACGGACCGAGGGTTGCGACAGTAGGATCGATAGCACG
* * * * *
13252583 CAGAGGGGGGATCGGGCTAATCC-CTGGC-T-CAGCATTTTGCCTCTCCGACTGGCTCAGCAT-C
64 CA-A-GGGGGATCGAGCTAATCCTC-GGCGTGC-GCATTCTGCCTCTCCGAC-CGATCA-AATCC
*
13252644 CGCACACTCATTTCATGGGTTAACTTAGGCATAC
123 CGCACACCCATTTCATGGGTTAACTTAGGCATAC
* * * * * *
13252678 GGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTCCGGCAGCAGGATCGACAGTACGT
1 GGAGTTCATTCCCAGTCTAAGATCAGAC-GGACCGAGGGTTGCGACAGTAGGATCGATAGCACGC
*
13252743 AGGGGGGATCGA
65 AAGGGGGATCGA
13252755 CAGCACGCAA
Statistics
Matches: 192, Mismatches: 34, Indels: 21
0.78 0.14 0.09
Matches are distributed among these distances:
157 12 0.06
158 54 0.28
159 100 0.52
160 24 0.12
161 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.31, T:0.23
Consensus pattern (156 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACGGACCGAGGGTTGCGACAGTAGGATCGATAGCACGCA
AGGGGGATCGAGCTAATCCTCGGCGTGCGCATTCTGCCTCTCCGACCGATCAAATCCCGCACACC
CATTTCATGGGTTAACTTAGGCATAC
Found at i:13253213 original size:26 final size:26
Alignment explanation
Indices: 13253184--13253236 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13253174 GTTGACTTAG
*
13253184 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
13253210 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
13253236 G
1 G
13253237 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:13253771 original size:26 final size:26
Alignment explanation
Indices: 13253731--13253786 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
13253721 TGGGTTGACT
13253731 TAAGCATACGAAGTTCATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
* * *
13253757 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
13253783 TAAG
1 TAAG
13253787 ATCGAACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGTC
Found at i:13256411 original size:26 final size:26
Alignment explanation
Indices: 13256375--13256427 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13256365 GTTGACTTAG
13256375 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13256401 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13256427 G
1 G
13256428 ATCTAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13256923 original size:26 final size:26
Alignment explanation
Indices: 13256874--13256926 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13256864 GTTGGCTTAG
*
13256874 GCATACAGAGTTCATTCTATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
13256900 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
13256926 G
1 G
13256927 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:13257795 original size:157 final size:157
Alignment explanation
Indices: 13257327--13257795 Score: 469
Period size: 157 Copynumber: 3.0 Consensus size: 157
13257317 GAGTGTTGCG
* * * * * *
13257327 GTAGTAGGATCGATAGCACGCAAGGGGGATCGGGCCGAT-CCCTGGCTTGTGCATTCTGCCTCTC
1 GTAGCAGGATCGACAGCACACAGGGGGGATCGGGCTGATCCCCT-GCTTGCGCATTCTGCCTCTC
* * * * * * *
13257391 TGGTCGACCGAGC-CCCGTACGTTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
65 CGATCAACTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* ***
13257455 TCTAAGCCTCGGTCGGACCGAGGGTTGTG
130 TCTAAGCCTCGGTCGGACCAAGGG-TACA
* * * * * * * * *
13257484 GCAGCGGGACCGACAGCACATAGAAGGGGACCGGGTTGATCCCCGGCTTGCGCATTATGCCTCTC
1 GTAGCAGGATCGACAGCACACAG-GGGGGATCGGGCTGATCCCCTGCTTGCGCATTCTGCCTCTC
* * * * * * *
13257549 CGACCACCTCAGCGCCCGAATGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-
65 CGATCAACTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAT
*
13257613 GTCTAAG-ATCGGATCGGACCAAGGGTACA
129 GTCTAAGCCTCGG-TCGGACCAAGGGTACA
* * * *
13257642 GTAGCAGGATCGACAACACACAGGGGGGATCGGGCTGGTCCCCTACTTGCGCATTCTACCTCTCC
1 GTAGCAGGATCGACAGCACACAGGGGGGATCGGGCTGATCCCCTGCTTGCGCATTCTGCCTCTCC
* ** *
13257707 GATCAACTGAGCGCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGT
66 GATCAACTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* *
13257772 CTAAGCCCCAGTCGGACCAAGGGT
131 CTAAGCCTCGGTCGGACCAAGGGT
13257796 TGCGGCAGCA
Statistics
Matches: 244, Mismatches: 61, Indels: 14
0.76 0.19 0.04
Matches are distributed among these distances:
156 3 0.01
157 117 0.48
158 61 0.25
159 60 0.25
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GTAGCAGGATCGACAGCACACAGGGGGGATCGGGCTGATCCCCTGCTTGCGCATTCTGCCTCTCC
GATCAACTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCCTCGGTCGGACCAAGGGTACA
Found at i:13257959 original size:27 final size:27
Alignment explanation
Indices: 13257929--13257986 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 27
13257919 CATGGGTTGA
13257929 CTAAGGCATACGGAGTTCATCCCCAGT
1 CTAAGGCATACGGAGTTCATCCCCAGT
* *
13257956 CTAA-GCATACGGAGTTCATTCCTAGT
1 CTAAGGCATACGGAGTTCATCCCCAGT
13257982 CTAAG
1 CTAAG
13257987 ATCGGATCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (27 bp):
CTAAGGCATACGGAGTTCATCCCCAGT
Found at i:13259039 original size:26 final size:26
Alignment explanation
Indices: 13259009--13259061 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13258999 GTTGACTTAG
13259009 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13259035 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13259061 G
1 G
13259062 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13259416 original size:159 final size:158
Alignment explanation
Indices: 13259035--13259475 Score: 361
Period size: 159 Copynumber: 2.8 Consensus size: 158
13259025 CCCAGTCTAA
* * * ** *
13259035 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATTGGACCGAGCGTTGCGACAGCAGGAT-TAGC
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGCGTTGCGACAGCAGGATCGA-C
* * * * * * * *
13259099 AGCATGCAGGGGGGATCAGACCGATCCCCAGCTTACGCATTCTGCCTCTTCGGCCGGTTGAGCGC
65 AGCACGCAGGGGGGATCAGACCGATCCCCAACTTACGCATTATGCCTCTCCGACCGGCTCAGCAC
** * *
13259164 CCTCACGCCCATTTCGTGGGTTGCCTTAG
130 CCGAACGCCCATTTCGTGGCTTGACTTAG
* ** * * * * * * *
13259193 GCATA-GTTAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCTGCGGGACCG
1 GCATACG-AAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACCGAGCGTTGCGACAGCAGGATCG
* * * *
13259255 ACAGCACGCAGAGGGGGA-CTAGGCTGATCCCCAACTTGCGCATTATGCCTCTCCGATCGGCTCA
63 ACAGCACGCAG-GGGGGATC-AGACCGATCCCCAACTTACGCATTATGCCTCTCCGACCGGCTCA
* * *
13259319 GCACCCGAACGCTCGTTTCGTGGCTTTACTTAG
126 GCACCCGAACGCCCATTTCGTGGCTTGACTTAG
**
13259352 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAATGTTGCGACAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGCGTTGCGACAGCAGGATCGACA
* * * * * ** * * *
13259417 CCATGCATGGAGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCGCTCCGACTGGCT
66 GCACGCA-GGGGGGATCAGACCGATCCCCAACTTACGCATTATGCCTCTCCGACCGGCT
13259476 GAGTGCCCGC
Statistics
Matches: 215, Mismatches: 57, Indels: 21
0.73 0.19 0.07
Matches are distributed among these distances:
157 3 0.01
158 51 0.24
159 155 0.72
160 6 0.03
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.22
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGCGTTGCGACAGCAGGATCGACA
GCACGCAGGGGGGATCAGACCGATCCCCAACTTACGCATTATGCCTCTCCGACCGGCTCAGCACC
CGAACGCCCATTTCGTGGCTTGACTTAG
Found at i:13259713 original size:26 final size:26
Alignment explanation
Indices: 13259677--13259729 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13259667 GTTGACTTAG
13259677 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13259703 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13259729 G
1 G
13259730 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13260006 original size:322 final size:320
Alignment explanation
Indices: 13259641--13260246 Score: 837
Period size: 322 Copynumber: 1.9 Consensus size: 320
13259631 TCTGACCTGT
13259641 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
1 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGC
* ***
13259705 ATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGAGTGAGGGTTGCGACAGCAGGATCGACAG
65 ATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCAAGGGTTGCGACAGCAGGATCGACAG
* * * * *
13259769 CA-CGCAGAGGGGACC-AGGTCGAT-CCTCGGCTTGCGCATTCTACCTCT-TCGATCGACTGAGT
129 CATAGC-GAGGGGACCGA-G-CGATCCCT-GACTTGCGCAGTCTACCTCTCT-GACCGACTGAGC
*
13259830 GCCCACACGCCCGTTTCATGGGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC
189 ACCCACACGCCCGTTTCATGGGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC
* *
13259895 CGGACCGAGGGTTGTGGGAATGGGACCGACAGGATCCCCAACTTGTGCATTCTGCCTCTCCGGTC
254 CGGACCGA-GGTTGTGGCAACGGGACCGACAGGATCCCCAACTTGTGCATTCTGCCTCTCCGGTC
13259960 GAC
318 GAC
* * *
13259963 TGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAAGCA
1 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCA
* * * *
13260028 TACGAAGTTCATTCTCAGTCTAAGATCAGACTGGACCAAGGGTTGTGACAGCAGGATCGATAGCA
66 TACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGATCGACAGCA
* * * * **
13260093 TATCGGGGGGACCGAGCGATCCCTGACTTGTGCAGTCTGCCTCTCTGACCGACTGAGCACCCGTA
131 TAGCGAGGGGACCGAGCGATCCCTGACTTGCGCAGTCTACCTCTCTGACCGACTGAGCACCCACA
* * *
13260158 CGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCGAACCGGACCG
196 CGCCCGTTTCATGGGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCG
*
13260223 AGGTTGTGGCAGCGGGACCGACAG
261 AGGTTGTGGCAACGGGACCGACAG
13260247 TAAGCAGAAG
Statistics
Matches: 249, Mismatches: 29, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
320 20 0.08
321 101 0.41
322 125 0.50
323 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (320 bp):
TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCA
TACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGATCGACAGCA
TAGCGAGGGGACCGAGCGATCCCTGACTTGCGCAGTCTACCTCTCTGACCGACTGAGCACCCACA
CGCCCGTTTCATGGGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCG
AGGTTGTGGCAACGGGACCGACAGGATCCCCAACTTGTGCATTCTGCCTCTCCGGTCGAC
Found at i:13260481 original size:26 final size:26
Alignment explanation
Indices: 13260452--13260504 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13260442 GTTGGCTTAG
*
13260452 GCATACAGAGTTTATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
13260478 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
13260504 G
1 G
13260505 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:13261563 original size:26 final size:26
Alignment explanation
Indices: 13261527--13261579 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13261517 GTTGACTTAG
13261527 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
13261553 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
13261579 G
1 G
13261580 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:13261936 original size:26 final size:26
Alignment explanation
Indices: 13261907--13261960 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
13261897 GTTGGCATAG
*
13261907 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
*
13261933 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
13261959 GC
1 GC
13261961 TCAAACCAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAGTCTAA
Found at i:13262298 original size:26 final size:26
Alignment explanation
Indices: 13262262--13262314 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13262252 ATTGACTTAG
*
13262262 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13262288 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13262314 G
1 G
13262315 ATCGGATGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13262655 original size:26 final size:26
Alignment explanation
Indices: 13262605--13262657 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13262595 GTTGGCTTAG
* *
13262605 GCATACAGAGTTCGTTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
13262631 GCATACAGAGTTCATTCC-TAATCTAA
1 GCATACAGAGTTCATTCCAT-ATCTAA
13262657 G
1 G
13262658 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:13264080 original size:26 final size:26
Alignment explanation
Indices: 13264051--13264103 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13264041 GTTGACTTAG
13264051 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
13264077 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13264103 G
1 G
13264104 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13264247 original size:26 final size:26
Alignment explanation
Indices: 13264197--13264249 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13264187 TCTCCGGTCG
* *
13264197 GCATACGGAGTTCGTTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13264223 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13264249 G
1 G
13264250 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13265690 original size:26 final size:26
Alignment explanation
Indices: 13265654--13265706 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13265644 GTTGACTTAG
*
13265654 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13265680 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13265706 G
1 G
13265707 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13265973 original size:159 final size:157
Alignment explanation
Indices: 13265680--13266180 Score: 449
Period size: 158 Copynumber: 3.2 Consensus size: 157
13265670 CCCAGTCTAA
* * * * * *
13265680 GCATACAGAGTTCATTCCCA-GTCTAAGATC-GAACCGGACCGAGGGTTGC-GATCGTAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAG-ACCAGACCGAGGGTTGCAGA-AGCAGGA-CC
* * ** * * *
13265742 GA-AGCACGCAGGGGGGATCGGGCCGATCTTCGACTTGCACATTCTGCCTCTCTGACCGGCTGAG
62 GACAGCACGCAGGGGGGACCGGTCCGATCCCCGACTTGCGCATT-TGCCTCTCAGGCCGGCTGAG
* *
13265806 CGCCCGCACACCCGTTTCGTGGGTTGGCTTAG
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * *
13265838 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGGCCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCAGACCGAGGGTTGCAGAAGCAGGACCGAC
* * * *
13265902 AGGACGCAGAGGGGGACCGGTCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTCAGCG
65 AGCACGCAG-GGGGGACCGGTCCGATCCCCGACTTGCGCATT-TGCCTCTCAGGCCGGCTGAGCG
* * *
13265967 CCCGCACGCTCGTTTCATGTGTTGACTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
13265997 GCATACGGAGTTCATTCCCA-ATCTAAGATCAGATCAGATCGAGGGTTGCAGAAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGGGTTGCAGAAGCAGGACCGAC
* * * * *
13266061 AGCACGTAGGGGGGACTGGGT-CGGTCCCTGACTTGCGCATTTCGCCTCTCAGGCCAGCTGAGCG
65 AGCACGCAGGGGGGAC-CGGTCCGATCCCCGACTTGCGCATTT-GCCTCTCAGGCCGGCTGAGCG
* * *
13266125 CCCGTACGCTTGTTTTGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
13266155 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
13266181 TCCTATGGAG
Statistics
Matches: 274, Mismatches: 58, Indels: 22
0.77 0.16 0.06
Matches are distributed among these distances:
157 10 0.04
158 136 0.50
159 124 0.45
160 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCGAGGGTTGCAGAAGCAGGACCGACA
GCACGCAGGGGGGACCGGTCCGATCCCCGACTTGCGCATTTGCCTCTCAGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13266700 original size:26 final size:26
Alignment explanation
Indices: 13266670--13266720 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13266660 TGGCTTCGAC
*
13266670 ATACGAAGTTCATTCCATGTCTAAGG
1 ATACGAAGTTCATTCCAGGTCTAAGG
* *
13266696 ATACGGAGTTCATTCCCGGTCTAAG
1 ATACGAAGTTCATTCCAGGTCTAAG
13266721 ATCAGACTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCAGGTCTAAGG
Found at i:13267046 original size:509 final size:506
Alignment explanation
Indices: 13265580--13267752 Score: 2275
Period size: 513 Copynumber: 4.3 Consensus size: 506
13265570 TACCACCCGC
* ** ** * * * * * * *
13265580 TCGATCCCCGGCTTGCGCATAT-TGCCTCTCTAGTAGGCTAAGCACCCACATGCTCATTTTGTGA
1 TCGATCCCCGACTTGCGCAT-TCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * * *
13265644 GTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
65 GTTGGCTTAGGCATACGAAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* ** * * * * *
13265708 TCGAACCGGACCGAGGGTTGC-GATCGTAGGATC-G--GAAGCA-CGCAG--GGGGGATCGGGCC
129 TCGGACTAGACCGAGGGTTGCAG-TAGCAGGACCAGCAGCAGGATCGCAGCAGGGGGATCGGGCC
* ** * *
13265766 GATCTTCGA-CTTGCACATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACACCCGTTTCGTGGGT
193 GATC-CCGATCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGT
*
13265830 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGG
257 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGG
* * * * * *
13265895 GGCCGACAGGACGCAGAGGGGGACCGGTCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGG
322 GACCGACAGCACGCAGAGGGGGACCGGT-CGATCCCCGACTTACACATTATGCCTCTTCGATCGG
* * *
13265960 CTCAGCGCCCGCACGCTCGTTTCATGTGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGA
386 CTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGA
* * *
13266025 TCAGATCAGATCGAGGGTTGCAGA-AGCAGGATCGATAGCACGTAGGGGGGA-CTGGG
451 TCAGATCAGACCGAGGGTTGCA-ACAGCAGGATCGACAGCACGCAGGGGGGATC-GGG
* * * * * * *
13266081 TCGGTCCCTGACTTGCGCATT-TCGCCTCTCAGGCCAGCTGAGCGCCCGTACGCTTGTTTTGTGG
1 TCGATCCCCGACTTGCGCATTCT-GCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * * *
13266145 GTTGGCTTAGGCATAC-AGAGTTCATTCCATGTCTAATCCTATGGAGTTCATTCCCATTCTAAGA
65 GTTGGCTTAGGCATACGA-AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
*
13266209 TCGGACTAGACCGAGGGTTGC-GATAGCAGGACCAGTAGCAGGATCAACAGCATGCAGGGGGTAT
129 TCGGACTAGACCGAGGGTTGCAG-TAGCAGGACCAGCAGCAGGAT---C-GCA-GCAGGGGG-AT
* * *
13266273 CGGGCCGATCCCCATCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCAG-ACGCCCGTTTC
187 CGGGCCGATCCCGATCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCC-GCACGCCCGTTTC
* * * * * *
13266337 ATGGGTTGGCTTAGGTATAGGGAGTTCCTTCCACGTCTAAGCCCCAACCGGACCAAGGGTTATGG
251 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGG
* * * *
13266402 CAGCGGGACCGGCAGCACGCAGAGGAGGACCGAGTCGATTCTCGACTTACACATTATGCCTCTTC
316 CAGCGGGACCGACAGCACGCAGAGGGGGACCG-GTCGATCCCCGACTTACACATTATGCCTCTTC
** * * *
13266467 GATCGGCTCAGTGCCCGTACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCTAAT
380 GATCGGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAAT
* * *
13266532 CTAAGATC-GAACCAGACCGAGGGTTGCAACAGTAGGATCGATAGCACGCAGGGGGGATCGGG
445 CTAAGATCAG-ATCAGACCGAGGGTTGCAACAGCAGGATCGACAGCACGCAGGGGGGATCGGG
* * * * *
13266594 TCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTGAGTGCCCGTACGCTCGTTTCATGGG
1 TCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * *
13266659 TTGGCTTCGACATACGAAGTTCATTCCATGTCTAAGGATACGGAGTTCATTCCCGGTCTAAGATC
66 TTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
13266724 AGACTGGACCGAGAGTTGCAGCAGGAGGACCAGCAGCAGGATCGGCAGCAGGAGGGATCGGGCTG
131 GGACTAGACCGAGGGTTGCAGTAGCAGGACCAGCAGCAGGATC-GCAGCAGG-GGGATCGGGCCG
* * * * * **
13266789 ATCTCGATCTTGTGCATTCTGCCTCTCCGGCCAGTTGAGCTCCCGCACGCTTGTTTCGTGGGTTG
194 ATCCCGATCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTG
* * * *
13266854 GCTTAGGCATAGCGAGTTCATTCCATGTCTAAGTCCCAGGCGGACCAAGGGTTGTTGCAGCGGGA
259 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGGGA
* ** * * * *
13266919 CTGACAGCACATAGAGGGGGACCGAGTCGATCCCCGGCTTGCACATTATGCCTTTTCGGTCGGCT
324 CCGACAGCACGCAGAGGGGGACCG-GTCGATCCCCGACTTACACATTATGCCTCTTCGATCGGCT
* * * *
13266984 CAACGCCCGCACGCTCATTTCATGGGTTGACTTATGTATATGGAGTTCATTCCCAGTCTAAGATC
388 CAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATC
** * * *
13267049 AGATTGGACTGAGGGTTGCGACAGCAGGATCGACAGCACGCACGGGGGATCGGG
453 AGATCAGACCGAGGGTTGCAACAGCAGGATCGACAGCACGCAGGGGGGATCGGG
* * * * *
13267103 TC-AGTCCCTGGCTTGCGCATTCTGTCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
1 TCGA-TCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * *
13267167 GTTGGCTTAGGCATACGGAGTTCATTCCATGTC-AGAGCATACGGAGTTCATTCCTAGTCTAAGT
65 GTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA-AGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
13267231 TCGGACCAAACCTAGGGTTGCAGTAGCAGGATCTA-CAGC---A---C-GCAGGGGGATCGGGTC
129 TCGGACTAGACCGAGGGTTGCAGTAGCAGGA-CCAGCAGCAGGATCGCAGCAGGGGGATCGGGCC
* * * * * * * * * *
13267288 GATCCCCG-GCTTGGGCATTCTGCCTCTTCGACCGACTGAGCACCCACAAGCCCATTTTGAGGGT
193 GAT-CCCGATCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGT
* * * * **
13267352 TGGCTTAGGTATAGGGAGTTCATTCCATGTCTGAGCCCTAGTCGGACTGAGGGTTGTGGCAGCGG
257 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGG
* * * * * *
13267417 GACCGAAAGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTTACGCATTATGCCT-TTACGACCG
322 GACCGACAGCACGCAGAGGGGGACCGGTC-GATCCCCGACTTACACATTATGCCTCTT-CGATCG
* * * * *
13267481 GCTCAATGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
385 GCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
* * *** * * *
13267546 ATCAAATC-GAACTGAGGGTTGCGGTAGCAAGATCGACAGCACGCATGGGGGGACCGAG
450 ATCAGATCAG-ACCGAGGGTTGCAACAGCAGGATCGACAGCACGCA-GGGGGGATCGGG
* * * * ** *
13267604 CCGATCCCCGACTTGTGCATTCTGCCACTACGGTTGACTGAGCGCCCGCACGCTCGTTTCGTGGG
1 TCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
*
13267669 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
66 TTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* *
13267734 -GAATCGGACCGAGGGTTGC
131 GGACT-AGACCGAGGGTTGC
13267753 GGCGGTAGGA
Statistics
Matches: 1405, Mismatches: 229, Indels: 76
0.82 0.13 0.04
Matches are distributed among these distances:
499 5 0.00
500 260 0.19
501 265 0.19
502 4 0.00
504 4 0.00
506 1 0.00
508 4 0.00
509 416 0.30
510 11 0.01
512 9 0.01
513 419 0.30
514 7 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (506 bp):
TCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
GGACTAGACCGAGGGTTGCAGTAGCAGGACCAGCAGCAGGATCGCAGCAGGGGGATCGGGCCGAT
CCCGATCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGC
TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGGGACC
GACAGCACGCAGAGGGGGACCGGTCGATCCCCGACTTACACATTATGCCTCTTCGATCGGCTCAA
CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
TCAGACCGAGGGTTGCAACAGCAGGATCGACAGCACGCAGGGGGGATCGGG
Found at i:13267518 original size:159 final size:159
Alignment explanation
Indices: 13267348--13267704 Score: 403
Period size: 159 Copynumber: 2.2 Consensus size: 159
13267338 CCCATTTTGA
* * * * * * * *
13267348 GGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTGAGCCCTAGTCGGACTGAGGGTTGTGGCA
1 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAATCGAACTGAGGGTTGCGGCA
** * * * * **
13267413 GCGGGACCGAAAGCACGCA-GAGGGGGACCGGGCTGATCCCTGGCTTACGCATTATGCCTTTACG
66 GCAAGACCGAAAGCACGCATG-GGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCACTACG
* *
13267477 ACCGGCTCAATGCCCGCACGCTCGTTTCGT
130 ACCGACTCAACGCCCGCACGCTCGTTTCGT
* * *
13267507 GGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCAAATCGAACTGAGGGTTGCGGT
1 GGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCAAATCGAACTGAGGGTTGCGGC
* * ** *
13267571 AGCAAGATCGACAGCACGCATGGGGGGACCGAGCCGATCCCCGACTTGTGCATTCTGCCACTACG
65 AGCAAGACCGAAAGCACGCATGGGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCACTACG
*** * *
13267636 GTTGACTGAGCGCCCGCACGCTCGTTTCGT
130 ACCGACTCAACGCCCGCACGCTCGTTTCGT
13267666 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
13267705 CATACGGAGT
Statistics
Matches: 163, Mismatches: 32, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
158 1 0.01
159 160 0.98
160 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (159 bp):
GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAATCGAACTGAGGGTTGCGGCA
GCAAGACCGAAAGCACGCATGGGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCACTACGA
CCGACTCAACGCCCGCACGCTCGTTTCGT
Found at i:13267714 original size:26 final size:26
Alignment explanation
Indices: 13267678--13267730 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13267668 GTTGGCTTAG
13267678 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13267704 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13267730 G
1 G
13267731 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13267868 original size:184 final size:185
Alignment explanation
Indices: 13267519--13267888 Score: 510
Period size: 184 Copynumber: 2.0 Consensus size: 185
13267509 GTTGACTTAG
* * *
13267519 GCATACGGAGTTCATTCCTAGTCTAAGATCAAATCGAACTGAGGGTTGCGGTAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGAACCGAGGGTTGCGGCAGCAAGATCGACA
* * * * * *
13267584 GCACGCATGGGGGGACCGAGCCGATCCCCGACTTGTGCATTCTGCCACTACGGTTGACTGAGCGC
66 GCACGCATAGGGGAACCGAGCCGATCCCCGACTTGCGCATTATGCCACTACGGCTGACTCAGCGC
*
13267649 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-ATGTCTAA
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTA-GTCTAA
* * * * * *
13267704 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGGCGGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGAACCGAGGGTTGCGGCAGCAAGATCGACA
* * * **
13267769 GCACGTA-AGGGGAACCGAGTCGATCCCCGACTTGCGCATTATGCCTCTACGGCTGGTTCAGCGC
66 GCACGCATAGGGGAACCGAGCCGATCCCCGACTTGCGCATTATGCCACTACGGCTGACTCAGCGC
* *
13267833 CCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
13267888 G
1 G
13267889 ATCGAACCAA
Statistics
Matches: 161, Mismatches: 23, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
184 98 0.61
185 63 0.39
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGAACCGAGGGTTGCGGCAGCAAGATCGACA
GCACGCATAGGGGAACCGAGCCGATCCCCGACTTGCGCATTATGCCACTACGGCTGACTCAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
Found at i:13268092 original size:342 final size:343
Alignment explanation
Indices: 13267460--13268094 Score: 934
Period size: 342 Copynumber: 1.9 Consensus size: 343
13267450 CCCTGGCTTA
* *
13267460 CGCATTATGCCTTTACGACCGGCTCAATGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
1 CGCATTATGCCTCTACGACCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
13267525 GGAGTTCATTCCTAGTCTAAGATCAAATCGAACTGAGGGTTGCGGTAGCAAGATCGACAGCACGC
66 GGAGTTCATTCCTAGTCTAAGATCAAACCAAAATGAGGGTTGCGATAGCAAGATCGACAGCACGC
* * * * *
13267590 ATGGGGGGACCGAGCCGATCCCCGACTTGTGCATTCTGCCACTACGGTTGACTGAGCGCCCGCAC
131 ATGGGGGGACCGAGCCGATCCCCGACTTGTGCATTCTACCACTACGATCGACTAAGCGCCAGCAC
*
13267655 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
196 GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
*
13267720 CCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGGCGGTAGGATCGGCAGCACGTAAGGGGAACC
261 CCCAGTCTAAGATCGAATCGGACAGAGGGTTGCGGCGGTAGGATCGGCAGCACGTAAGGGGAACC
13267785 GAGTCGATCCCCGACTTG
326 GAGTCGATCCCCGACTTG
* * * * * *
13267803 CGCATTATGCCTCTACGGCTGGTTCAGCGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATAC
1 CGCATTATGCCTCTACGACCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
13267868 GGAGTTCATTCCTAGTCTAAGATCGAACCAAAATGAGGGTTGCGATAGCAGGATCGACAGCGCGT
66 GGAGTTCATTCCTAGTCTAAGATCAAACCAAAATGAGGGTTGCGATAGCAAGATCGACAGCACGC
* * * *
13267933 A-GGGGGGACCGAGCC-AGTCCCCGGCTTGTGCATTCTACCTCTCCGATCGGCTAAGCGCCAGCA
131 ATGGGGGGACCGAGCCGA-TCCCCGACTTGTGCATTCTACCACTACGATCGACTAAGCGCCAGCA
* * * *
13267996 TGCTCATTTTGTGTGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCATACGGAGTTCAT
195 CGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
* *
13268061 TCCCAGTCTATGATCAGACT-GGACAGAGGGTTGC
260 TCCCAGTCTAAGATC-GAATCGGACAGAGGGTTGC
13268095 AATAGCAGGA
Statistics
Matches: 257, Mismatches: 33, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
341 1 0.00
342 138 0.54
343 118 0.46
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (343 bp):
CGCATTATGCCTCTACGACCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATTCCTAGTCTAAGATCAAACCAAAATGAGGGTTGCGATAGCAAGATCGACAGCACGC
ATGGGGGGACCGAGCCGATCCCCGACTTGTGCATTCTACCACTACGATCGACTAAGCGCCAGCAC
GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCGAATCGGACAGAGGGTTGCGGCGGTAGGATCGGCAGCACGTAAGGGGAACC
GAGTCGATCCCCGACTTG
Found at i:13268562 original size:158 final size:155
Alignment explanation
Indices: 13268350--13268891 Score: 455
Period size: 159 Copynumber: 3.4 Consensus size: 155
13268340 TCTCCGATCG
* * * * *
13268350 GCCTCTTCGACCGATTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTAAGGCATACGGAGTTCA
1 GCCTCTTCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
13268415 TCCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGTAGGATCGGCAGCACATATG-GGGG
66 T-CCCAGTCTAAGATCAGACCGGA-CGAGGGTTGC-GCAGCAGGATCGGTAGCACATA-GAGGGG
* *
13268479 ATCAAGCCGATCCCCAGA-TTGTGCATTCT
127 ATCGAGCCGATCCCC-GACTTGCGCATTCT
** * * * *
13268508 GCCTCTTCGGCCGGTTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATA-GGCAGCTC
1 GCCTCTTCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG-AGTTC
* ** * * * *
13268572 ATTCCATGTCTAAGCCCCA-ACCGGACTGAGGGTTGTGGCAGCGGGACCGGTAGC-CCTCAGAGG
65 ATCCCA-GTCTAAG-ATCAGACCGGAC-GAGGGTTG-CGCAGCAGGATCGGTAGCACAT-AGAGG
* * *
13268635 CGGATCGGGTCGATCCCCGACTTGCGCATTAT
125 -GGATCGAGCCGATCCCCGACTTGCGCATTCT
* * * * * * * *
13268667 GCCTCTTCGGCGGGCTCAGCGCCCGTACTCTCGTTTCATGGGTTGACTTATGCATACGGAGTTTA
1 GCCTCTTCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * * * *
13268732 TTCCCAGTCTAAGATTAGATCAGACCGAGGGTTGCGATAGCAGGTTCGATAGCACGTAGGAGGGG
66 -TCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCG-CAGCAGGATCGGTAGCACATA-GAGGGG
* * * *
13268797 ACCGAGCTGATCCTCGACTTACGCATTCT
127 ATCGAGCCGATCCCCGACTTGCGCATTCT
* * * * * *
13268826 GCCTCTCCAGCTGACTAAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
1 GCCTCTTCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
13268891 T
66 T
13268892 TGCATGTCTA
Statistics
Matches: 304, Mismatches: 64, Indels: 32
0.76 0.16 0.08
Matches are distributed among these distances:
157 9 0.03
158 96 0.32
159 186 0.61
160 13 0.04
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (155 bp):
GCCTCTTCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TCCCAGTCTAAGATCAGACCGGACGAGGGTTGCGCAGCAGGATCGGTAGCACATAGAGGGGATCG
AGCCGATCCCCGACTTGCGCATTCT
Found at i:13270141 original size:26 final size:26
Alignment explanation
Indices: 13270105--13270155 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13270095 GTTGGCTTAG
13270105 GCATACGGAGTTCA-TCCCATGTCTAC
1 GCATACGGAGTTCATTCCCA-GTCTAC
13270131 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
13270156 AGATCGGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAC
Found at i:13270997 original size:26 final size:26
Alignment explanation
Indices: 13270961--13271013 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13270951 GTTAGCTTAG
*
13270961 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
13270987 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
13271013 G
1 G
13271014 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:13271687 original size:159 final size:158
Alignment explanation
Indices: 13271401--13271700 Score: 336
Period size: 159 Copynumber: 1.9 Consensus size: 158
13271391 AGATCAGACT
* *
13271401 AGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGGAGGGACTGGGCCGATCCACAGCTTGC
1 AGACCGAGGGTTGCGGCAGCAGGACCGATAGCACGCAGGAGGGACTGGGCCGATCCACAGCTTAC
* * * * * * **
13271466 GCATTCTGCCTCTCCAGCCGGTTGAGCTCCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGG
66 GCATTATGCCTCTCCAGCCGGCTCAGCTCCCGCACGCCTGTTTCATAGGTAGACTTAGGCATACA
13271531 GAGTTCATTCCATGTGTAAGCCCCAATC
131 GAGTTCATTCCATGTGTAAGCCCCAATC
* ** * * * *
13271559 AGACCGAGGGTTGTGGCAGTGGGACCGATAGCACTCAGAGGGGGA-TCGGGCCGATCCTCGGCTT
1 AGACCGAGGGTTGCGGCAGCAGGACCGATAGCACGCAG-GAGGGACT-GGGCCGATCCACAGCTT
* * * * * *
13271623 ACGTATTATGCCTTTTCGGCCGGCTCAG-TGCCCGCAC-TCTCGTTTCATAGGTAGACTTATGCA
64 ACGCATTATGCCTCTCCAGCCGGCTCAGCT-CCCGCACGCCT-GTTTCATAGGTAGACTTAGGCA
13271686 TACAGAGTTCATTCC
127 TACAGAGTTCATTCC
13271701 CAATCTAAGA
Statistics
Matches: 115, Mismatches: 23, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
158 37 0.32
159 78 0.68
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
AGACCGAGGGTTGCGGCAGCAGGACCGATAGCACGCAGGAGGGACTGGGCCGATCCACAGCTTAC
GCATTATGCCTCTCCAGCCGGCTCAGCTCCCGCACGCCTGTTTCATAGGTAGACTTAGGCATACA
GAGTTCATTCCATGTGTAAGCCCCAATC
Found at i:13271879 original size:26 final size:26
Alignment explanation
Indices: 13271843--13271895 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13271833 GTTGGCTTAG
*
13271843 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13271869 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13271895 G
1 G
13271896 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13273180 original size:26 final size:26
Alignment explanation
Indices: 13273144--13273196 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13273134 GTTGACTTAG
13273144 GCATACGGAGTTC-ATCCCCAGTCTAA
1 GCATACGGAGTTCAAT-CCCAGTCTAA
*
13273170 GCATATGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
13273196 G
1 G
13273197 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:13275216 original size:159 final size:157
Alignment explanation
Indices: 13274761--13275240 Score: 511
Period size: 157 Copynumber: 3.0 Consensus size: 157
13274751 CAGAGTTCAT
* * * *
13274761 TCTAAGATCGGATCGGACCGAGGGTTGCGGCAGTAGGATGGGCAGCACGGAGGGGGGACCGGGTC
1 TCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACC-GGTC
* * * * * *
13274826 GATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCACACGCCCATTTCATGGGTT
65 GATCCCTTGCTTGCTCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTT
*
13274891 GGCTTAGGCATAGGGAGTTCATTCCATG
130 GGCTTAGGCATACGGAGTTCATTCCATG
* ** * * * * * *
13274919 TCTAGGCCCCAG-CCGGACTGAGGGTTGTGGCAGCAGGACCGGTAGCACGCAGAGGGGA-CGGAT
1 TCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGG-T
* * * *
13274982 CGAT-CCTTGACTTG-TGTATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCATGG
64 CGATCCCTTG-CTTGCT-CATTATGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCATGG
*
13275045 GTTGACTTAGGCATACGGAGTTCATTCCCA-G
127 GTTGGCTTAGGCATACGGAGTTCATT-CCATG
* * * * * *
13275076 TCTAAGATCAGATCGAACCGAGGGTTGCGGCAGCAAGATTGACAGCACACAGGGGGGGACCGTGC
1 TCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA-GGGGGGACCG-GT
* * * * *
13275141 CGATCCCTTGCTTGCTCATTTTGCCTCTCTGGCCGACTGAGCGCCCGCACGCTCTTTTCATGTGT
64 CGATCCCTTGCTTGCTCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGT
**
13275206 TGGCTTAGGCATACAAAGTTCATTCCATG
129 TGGCTTAGGCATACGGAGTTCATTCCATG
13275235 TCTAAG
1 TCTAAG
13275241 CATACGGAGT
Statistics
Matches: 259, Mismatches: 51, Indels: 23
0.78 0.15 0.07
Matches are distributed among these distances:
156 9 0.03
157 108 0.42
158 54 0.21
159 81 0.31
160 7 0.03
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
TCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGTCG
ATCCCTTGCTTGCTCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTG
GCTTAGGCATACGGAGTTCATTCCATG
Found at i:13275292 original size:26 final size:26
Alignment explanation
Indices: 13275222--13275283 Score: 124
Period size: 26 Copynumber: 2.4 Consensus size: 26
13275212 AGGCATACAA
13275222 AGTTCATTCCATGTCTAAGCATACGG
1 AGTTCATTCCATGTCTAAGCATACGG
13275248 AGTTCATTCCATGTCTAAGCATACGG
1 AGTTCATTCCATGTCTAAGCATACGG
13275274 AGTTCATTCC
1 AGTTCATTCC
13275284 CACTCTAAGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
AGTTCATTCCATGTCTAAGCATACGG
Found at i:13275650 original size:171 final size:170
Alignment explanation
Indices: 13275266--13275659 Score: 377
Period size: 171 Copynumber: 2.3 Consensus size: 170
13275256 CCATGTCTAA
* * * * * ** *
13275266 GCATACGGAGTTCATTCCCACTCTAAGATCGGATCGGACTGAGGGTTGCGATAGTAGGTCCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGATTGCGACAACAGGACCAGCA
* * * * *
13275331 GTAGGATCGACAGCACGCAGGGGGGACTGGGTCGATCCTCGGCTTGCGCATTTTACCTCTCTGGT
66 GCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCTCGGCTTACGCATTATACCTCTCTGGC
* ** * *
13275396 CGGCTGAGCACCCTTACGCTCATTTCGTGTGTTGGCTTTG
131 CAGCTGAGCACCCGCACGCTCATTTCGTGTGTTGACTTAG
* * * ** * * * *
13275436 GTATACGGAGTTCGTT-CCATGTCTAAG-CCCCAGCCAGACCGAGGATTGTGGCAACAGGACC-G
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGA-ACCGAGGATTGCGACAACAGGACCAG
* * *
13275498 ACAGCAGGATCGACAGGACGCAGAGGGGGACCGGG-CTGATCC-CTGGCTTATGCATTATGCCTC
64 -CAGCAGGATCGACAGCACGCAG-GGGGGACCGGGTC-GATCCTC-GGCTTACGCATTATACCTC
* * *
13275561 TCTGGCCAGTTGAGCGCCCGCACGCTCATTTTGTAG-GTTGACTTAG
125 TCTGGCCAGCTGAGCACCCGCACGCTCATTTCGT-GTGTTGACTTAG
*
13275607 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGATTGCGACA
13275660 GTAGGATCGG
Statistics
Matches: 172, Mismatches: 43, Indels: 17
0.74 0.19 0.07
Matches are distributed among these distances:
169 7 0.04
170 58 0.34
171 99 0.58
172 8 0.05
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (170 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGATTGCGACAACAGGACCAGCA
GCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCTCGGCTTACGCATTATACCTCTCTGGC
CAGCTGAGCACCCGCACGCTCATTTCGTGTGTTGACTTAG
Found at i:13275758 original size:158 final size:158
Alignment explanation
Indices: 13275571--13276108 Score: 516
Period size: 158 Copynumber: 3.4 Consensus size: 158
13275561 TCTGGCCAGT
* * *
13275571 TGAGCGCCCGCACGCTCATTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGA
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGA
* * * * *
13275635 TCGGATCGAACCGAGGGTTGCGACAGTAGGATCGGCAGCACGCAGGAGGGACCGAGCCAATCCTC
65 TCAGAACGAACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGGAGGGACCGAGTCGATCCTC
* *
13275700 GGCTTGCATATTCTGCCTCTCCGGCCGGC
130 GGCTTGCACATTCTGCCTCTCCGACCGGC
* * * * *
13275729 TGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-C
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGAT
** * *
13275793 CCCAACTGAACCGA-GGTTGTGGCAGTAGGATCGGCAGCACGCAGAGAGGGA-CTAGGTCGATCC
66 CAGAAC-GAACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAG-GAGGGACCGA-GTCGATCC
* * * *
13275856 TCGGCTTACGCATTATGCCTCTTCGACCGGC
128 TCGGCTTGCACATTCTGCCTCTCCGACCGGC
* * * * * *
13275887 TCAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCCTTCCCA-GTCTAAGA
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGA
* * ** * * * * * * * *
13275951 TCAGACCGGATGGAGGGTTGCGGTAGTAGGATTGACAACACCCTGGGGGGGACTG-GATCGATCC
65 TCAGAACGAACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGC-AGGAGGGACCGAG-TCGATCC
* **
13276015 -CTGGCTTG-AGCATTCTGCCTCTCCGATCGAT
128 TC-GGCTTGCA-CATTCTGCCTCTCCGACCGGC
* * *
13276046 TGAGCGCCCGCACGCTCGTTTCGTGCGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAG
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
13276109 CATACGAAGT
Statistics
Matches: 303, Mismatches: 64, Indels: 25
0.77 0.16 0.06
Matches are distributed among these distances:
157 36 0.12
158 155 0.51
159 111 0.37
160 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGAT
CAGAACGAACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGGAGGGACCGAGTCGATCCTCG
GCTTGCACATTCTGCCTCTCCGACCGGC
Found at i:13276120 original size:26 final size:26
Alignment explanation
Indices: 13276084--13276134 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13276074 TGGCTTAGGT
*
13276084 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGAAGTTCATTCCCA-GTCTAAGC
13276110 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
13276135 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:13278012 original size:26 final size:26
Alignment explanation
Indices: 13277983--13278032 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
13277973 CCGATCTGAT
*
13277983 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAACGAACTCCGTATG
13278009 CTTAGACATGGAACGAACTCCGTA
1 CTTAGACATGGAACGAACTCCGTA
13278033 CGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (26 bp):
CTTAGACATGGAACGAACTCCGTATG
Found at i:13279459 original size:158 final size:157
Alignment explanation
Indices: 13279238--13279529 Score: 413
Period size: 158 Copynumber: 1.9 Consensus size: 157
13279228 GCTTAGACAA
* * * *
13279238 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCCGGTGCTCAGTCGGCCGAAG
1 GGAATGAACTCTGCATGCCTAAGCCAACCCACGAAACGAGCATGCCGGTGCTAAGCCGACCGAAG
* * *
13279303 AGGCAGAATGCGCAAGCCGAGAATCGGCCCAGTCCCCCATGCGTGCTGTCGATCCTGTTGTCGCA
66 AGGCAGAATGCGCAAGCCGAGAATCGGCACAGTCCCCC-TACGTGCTGTCGATCCTGCTGTCGCA
13279368 ACCCTTGGTTTGGTCCTATCTTAGATTG
130 ACCCTTGGTTTGGTCCTATCTTAGATTG
* * * *
13279396 GGAATGAACTTTGCATGCCTAAGTCAACCCACGAAACGAGCATTCGGGTGCTAAGCCGACCGAAG
1 GGAATGAACTCTGCATGCCTAAGCCAACCCACGAAACGAGCATGCCGGTGCTAAGCCGACCGAAG
* * * * * * *
13279461 AGGCATAATGGGTAAGCCGGGGATCGGCACGGTCCCCCTACGTGCTGTCGATCCTGCTGTCGTAA
66 AGGCAGAATGCGCAAGCCGAGAATCGGCACAGTCCCCCTACGTGCTGTCGATCCTGCTGTCGCAA
13279526 CCCT
131 CCCT
13279530 CAATTTGGTT
Statistics
Matches: 116, Mismatches: 18, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
157 28 0.24
158 88 0.76
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
GGAATGAACTCTGCATGCCTAAGCCAACCCACGAAACGAGCATGCCGGTGCTAAGCCGACCGAAG
AGGCAGAATGCGCAAGCCGAGAATCGGCACAGTCCCCCTACGTGCTGTCGATCCTGCTGTCGCAA
CCCTTGGTTTGGTCCTATCTTAGATTG
Found at i:13279580 original size:26 final size:26
Alignment explanation
Indices: 13279544--13279595 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13279534 TTGGTTTGAT
*
13279544 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
13279570 CTTAGACTGGGGATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13279596 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13279774 original size:26 final size:26
Alignment explanation
Indices: 13279743--13279795 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13279733 CCGGTCTGAT
13279743 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
13279769 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
13279795 C
1 C
13279796 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:13280196 original size:159 final size:158
Alignment explanation
Indices: 13279768--13280198 Score: 406
Period size: 159 Copynumber: 2.7 Consensus size: 158
13279758 AACTCCGTAT
* * *
13279768 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCAG
* * * * * * *
13279833 TCGACCGGAGGGGCAGAATGTC-CAAGCTGGGGATTGGCCCGGTCCCCC-CTGCGTGCTGTCAAT
66 CCGACCGGAGAGGCAGAATG-CGCAAGCCGAGGATCGGTCC-GTCCCCCTCTGCGTGCTCTCAAT
* * *
13279896 CTTGCTGCCGCAACCCTCAGTCCGGTTCGA
129 CCTGCTACCACAACCCTCAGTCCGGTTCGA
* * * * * * *
13279926 TCTTAGAC-TGCGAATGAACTCCGTATGCCTAAGTCAGCCCATGAAACGAGCATTCGGGCGCTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCA
* * * * *
13279990 GCCGATCGGATAGGCATAATGCGCAAGCC-AGGGATCGGCTCAGTCCCCCTCTGCGTGCTACT-G
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGG-TCCGTCCCCCTCTGCGTGCT-CTCA
* * * * *
13280053 GTCCTGTTACCACAACCCTCAGTTTC-GTTGGG
127 ATCCTGCTACCACAACCCTCAG-TCCGGTTCGA
* * * * * *
13280085 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAAGGGGCATACAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCAG
* *
13280150 CCGACCGGAGAGACAGAATGCGTAAGCCGAGGATCGGTCCGATCCCCCT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGTCCG-TCCCCCT
13280199 GTATGCTACC
Statistics
Matches: 215, Mismatches: 48, Indels: 19
0.76 0.17 0.07
Matches are distributed among these distances:
157 3 0.01
158 89 0.41
159 117 0.54
160 6 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGTCCGTCCCCCTCTGCGTGCTCTCAATCC
TGCTACCACAACCCTCAGTCCGGTTCGA
Found at i:13280360 original size:321 final size:317
Alignment explanation
Indices: 13279768--13280362 Score: 701
Period size: 321 Copynumber: 1.9 Consensus size: 317
13279758 AACTCCGTAT
* ** * * * *
13279768 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAAGGAGCATACAGGTGCTCAG
* * * * * * * * ** *
13279833 TCGACCGGAGGGGCAGAATGTCCAAGCTGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCAATCT
66 CCGACCGGAGAGACAGAATGTCCAAGCCGAGGATCGGCCCGATCCCCCCTGCATGCTACCAATCC
* * *
13279898 TGCTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAG
131 TGCTACCGCAACCCTCAGTCCGATTCGATCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * * **
13279963 CCCATGAAACGAGCATTCGGGCGCTGAGCCGATCGGATAGGCATAATGCGCAAGCCAGGGATCGG
196 CCCATGAAACCAGCATGCGGACGCTCAGCCGATCGGAGAGACATAATGCACAAGCCAGGGATAAG
*
13280028 CTCAGTCCCCCTCTGCGTGCTACTGGTCCTGTTACCACAACCCTCAGTTTCGTTGGG
261 CCCAGTCCCCCTCTGCGTGCTACTGGTCCTGTTACCACAACCCTCAGTTTCGTTGGG
*
13280085 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAAGGGGCATACAGGTGCTCAG
1 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAAGGAGCATACAGGTGCTCAG
* * * *
13280150 CCGACCGGAGAGACAGAATG-CGTAAGCCGAGGATCGGTCCGAT-CCCCCTGTATGCTACCGATC
66 CCGACCGGAGAGACAGAATGTC-CAAGCCGAGGATCGGCCCGATCCCCCCTGCATGCTACCAATC
* * *
13280213 CTGCTACCGCAGCCCTCGATCCGATCCGATTCGATCTTATATTAG-GAATGAACTCCGTATGCCT
130 CTGCTACCGCAACCCTC-A---G-TCCGATTCGATCTTAGACT-GCGAATGAACTCCGTATGCCT
* * * * *
13280277 AAGTCAACTCATGAAACCAGCGTGCGGACGCTCAGCCGGTCGGAGAGACATAATGCACAAGTCGG
189 AAGTCAACCCATGAAACCAGCATGCGGACGCTCAGCCGATCGGAGAGACATAATGCACAAGCCAG
*
13280342 GGATAAGCCCGGTCCCCCTCT
254 GGATAAGCCCAGTCCCCCTCT
13280363 TCGCGCTATC
Statistics
Matches: 226, Mismatches: 45, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
316 30 0.13
317 90 0.40
320 1 0.00
321 104 0.46
322 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAAGGAGCATACAGGTGCTCAG
CCGACCGGAGAGACAGAATGTCCAAGCCGAGGATCGGCCCGATCCCCCCTGCATGCTACCAATCC
TGCTACCGCAACCCTCAGTCCGATTCGATCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAA
CCCATGAAACCAGCATGCGGACGCTCAGCCGATCGGAGAGACATAATGCACAAGCCAGGGATAAG
CCCAGTCCCCCTCTGCGTGCTACTGGTCCTGTTACCACAACCCTCAGTTTCGTTGGG
Found at i:13280705 original size:184 final size:184
Alignment explanation
Indices: 13280396--13280734 Score: 536
Period size: 184 Copynumber: 1.8 Consensus size: 184
13280386 AGAGGCCGGT
* * *
13280396 CAGAGAGACATAATGCACAAGTCGAGGATCAACCCGATCCCCCTCTGCGTGCTACTGATCCCGCT
1 CAGAGAGACATAACGCACAAGCCGAGGATCAACCCGATCCCCCTCTGCGTGCTACTGATCCCACT
*
13280461 ACCGGTCCTGCTGTCACAACCCTCGATCTGGCTGGGGCTTAGATATGGAATGAACTCCGTATGCC
66 ACCGGTCCTGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGATATGGAATGAACTCCGTATGCC
*
13280526 TAAGCCAACCCATGAAACGAGCGTGTAAGTGCTCAACCAACCGGAGAGGTTGGC
131 TAAGCCAACCCATGAAACAAGCGTGTAAGTGCTCAACCAACCGGAGAGGTTGGC
* * * * * * *
13280580 CAGAGAGGCATAACGCACAAGCCGGGGATCAGCTCGGTCCCCCTCTGCGTGCT-GTCGATCCCAT
1 CAGAGAGACATAACGCACAAGCCGAGGATCAACCCGATCCCCCTCTGCGTGCTACT-GATCCCAC
*
13280644 TGCCGGTCCTGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGATATGGAATGAACTCCGTATGC
65 TACCGGTCCTGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGATATGGAATGAACTCCGTATGC
*
13280709 CTAAGCCAATCCATGAAACAAGCGTG
130 CTAAGCCAACCCATGAAACAAGCGTG
13280735 CGGGTGCTCA
Statistics
Matches: 140, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
183 1 0.01
184 139 0.99
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (184 bp):
CAGAGAGACATAACGCACAAGCCGAGGATCAACCCGATCCCCCTCTGCGTGCTACTGATCCCACT
ACCGGTCCTGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGATATGGAATGAACTCCGTATGCC
TAAGCCAACCCATGAAACAAGCGTGTAAGTGCTCAACCAACCGGAGAGGTTGGC
Found at i:13280877 original size:26 final size:26
Alignment explanation
Indices: 13280841--13280893 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13280831 TCGGTTCAAT
*
13280841 CTTAGACTGGGAATGAGCTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
13280867 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13280893 C
1 C
13280894 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13280920 original size:185 final size:184
Alignment explanation
Indices: 13280681--13281236 Score: 611
Period size: 185 Copynumber: 3.0 Consensus size: 184
13280671 TCTGGCTGGG
* * * * * *
13280681 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAATCCATGAAACAAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGTGCTCAG
* ** * * *
13280746 CCGGTTGGAGAGGTAGATTGCATAAGCCGGGGATCGACCCGATCCCCCTCTGCATGCTGCCGATC
66 TCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCTCTGCATGCTGCCGATC
*
13280811 CTGCTACCGTAACCCTCAGTTCGGT-TCAATCTTAGACTGGGAATGAGCTCTGTAT
131 CTGCTACCGTAACCCTC-GTTCGGTCT-AATCTTAGACTGGGAATGAACTCTGTAT
* * * * *
13280866 GCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTCAAAACACAAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGTGCTCA
* * * *
13280930 GTCAGCCGGAGAGGCAGAATGCGTAAGTCGGGGATC-AGCTCGATCCCTC-CTGCATGCTGCCGA
65 GTCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGA-CCCGATCCCCCTCTGCATGCTGCCGA
*** * * * *
13280993 TCCTGCTACTACAAGCCTCGATCCGATCTAATCTTAGACTGGGAATGAACTCCGTAT
129 TCCTGCTACCGTAACCCTCG-TTCGGTCTAATCTTAGACTGGGAATGAACTCTGTAT
* * *
13281050 GCTTAGACATGGAATGAACT-TCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTTCTCA
1 GCTTAGACATGGAATGAACTCT-GTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGTGCTCA
* * * * * * * *
13281114 GTCGACCGGAGAGGCAGAAAGCGTAAGCCGGGAACCGGCCCGATCCCCACT-TACGTGCTGTCGA
65 GTCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCC-CTCTGCATGCTGCCGA
* * *
13281178 TCCTGCTACCGTAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCTGTAT
129 TCCTGCTACCGTAACCCTCG-TTCGGTCTAATCTTAGACTGGGAATGAACTCTGTAT
13281235 GC
1 GC
13281237 CTAAGCCAAC
Statistics
Matches: 305, Mismatches: 57, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
183 2 0.01
184 151 0.50
185 152 0.50
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGTGCTCAG
TCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCTCTGCATGCTGCCGATC
CTGCTACCGTAACCCTCGTTCGGTCTAATCTTAGACTGGGAATGAACTCTGTAT
Found at i:13281054 original size:26 final size:26
Alignment explanation
Indices: 13281025--13281077 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13281015 CCGATCTAAT
13281025 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
13281051 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
13281077 C
1 C
13281078 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:13281057 original size:184 final size:183
Alignment explanation
Indices: 13280681--13281236 Score: 582
Period size: 184 Copynumber: 3.0 Consensus size: 183
13280671 TCTGGCTGGG
* * ** ** * * *
13280681 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAATCCATGAAACAAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAAACACAAAACGAGCGTGCGGGCGCTCAG
* *** * * * *
13280746 CCGGTTGGAGAGGTAGATTGCATAAGCCGGGGATCGACCCGATCCCCCTCTGCATGCTGCCGATC
66 TCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCG-CCCGAT-CCCCACTGCATGCTGCCGATC
* * * *
13280811 CTGCTACCGTAACCCTCAGTTCGGTTC-AATCTTAGACTGGGAATGAGCTCTGTAT
129 CTGCTACCGTAACCCTC-GATCCGATCTAATCTTAGACTGGGAATGAACTCTGTAT
* *
13280866 GCTTAGAC-TGGGGATGAAC-TCTGTATGCCTAAGTCAAAACACAAAACGAGCGTGCGGGCGCTC
1 GCTTAGACAT-GGAATGAACTTC-GTATGCCTAAGCCAAAACACAAAACGAGCGTGCGGGCGCTC
* *
13280929 AGTC-AGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCAGCTCGATCCCTC-CTGCATGCTGCCG
64 AGTCGA-CCGGAGAGGCAGAATGCGTAAGCCGGGGATC-GCCCGATCCC-CACTGCATGCTGCCG
*** * *
13280992 ATCCTGCTACTACAAGCCTCGATCCGATCTAATCTTAGACTGGGAATGAACTCCGTAT
126 ATCCTGCTACCGTAACCCTCGATCCGATCTAATCTTAGACTGGGAATGAACTCTGTAT
** * * **
13281050 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTTCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAAACACAAAACGAGCGTGCGGGCGCTCAG
* * * * * *
13281115 TCGACCGGAGAGGCAGAAAGCGTAAGCCGGGAACCGGCCCGATCCCCACTTACGTGCTGTCGATC
66 TCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATC-GCCCGATCCCCAC-TGCATGCTGCCGATC
* * *
13281180 CTGCTACCGTAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCTGTAT
129 CTGCTACCGTAACCCTCGATCCGATCTAATCTTAGACTGGGAATGAACTCTGTAT
13281235 GC
1 GC
13281237 CTAAGCCAAC
Statistics
Matches: 306, Mismatches: 54, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
183 7 0.02
184 151 0.49
185 147 0.48
186 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAAACACAAAACGAGCGTGCGGGCGCTCAG
TCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGCCCGATCCCCACTGCATGCTGCCGATCCT
GCTACCGTAACCCTCGATCCGATCTAATCTTAGACTGGGAATGAACTCTGTAT
Found at i:13281314 original size:159 final size:156
Alignment explanation
Indices: 13281051--13281550 Score: 560
Period size: 159 Copynumber: 3.2 Consensus size: 156
13281041 ACTCCGTATG
* * * *
13281051 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTTCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTACTCAGC
* * * *
13281116 CGACCGGAGAGGCAGAAAGCGTAAGCCGGGAACCGGCCCGATCCCCACTTACGTGCTGTCGATCC
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGGG-ATC-GCCCGATCCCC-CTTACGTGCTGTCGATCC
* * * *
13281181 TGCTACCGTAACCCTCGATCCGGTCTGAT
128 TACTGCCGCAACCCTCGGTCCGGTCTGAT
* * *
13281210 CTTAGAC-TAGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTACTCAG
* * * *
13281274 CCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGGTC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCG-GGATC-GCCCGATCCCCCT-TACGTGCTGTCGATC
* * * **
13281339 CCACTGCCACAACCCTCGGTCCAG-CTGGGG
127 CTACTGCCGCAACCCTCGGTCCGGTCT-GAT
* * *
13281369 ATTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-GCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTACTCAGC
* * * *
13281433 CAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCGTACATGCTGTC-ATTCC
66 CGGCCGGAGAGGCAGAATGCGCAAGCC-GGGATCG-CCCGATCCCCCTTACGTGCTGTCGA-TCC
* *
13281497 TACTGTCGCAACCCTCGGTCCGATCTGAT
128 TACTGCCGCAACCCTCGGTCCGGTCTGAT
*
13281526 CTTAGA-TTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
13281551 GTTAGACTAG
Statistics
Matches: 283, Mismatches: 49, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
156 17 0.06
157 37 0.13
158 51 0.18
159 175 0.62
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTACTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCGGGATCGCCCGATCCCCCTTACGTGCTGTCGATCCTAC
TGCCGCAACCCTCGGTCCGGTCTGAT
Found at i:13282285 original size:26 final size:26
Alignment explanation
Indices: 13282247--13282299 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13282237 TGCTCAAACT
13282247 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13282273 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13282299 C
1 C
13282300 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13285561 original size:26 final size:26
Alignment explanation
Indices: 13285511--13285563 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13285501 CCAGTCCGAT
**
13285511 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13285537 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13285563 C
1 C
13285564 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13285964 original size:159 final size:158
Alignment explanation
Indices: 13285672--13286038 Score: 333
Period size: 159 Copynumber: 2.3 Consensus size: 158
13285662 ATCTTGCTGT
* * * *
13285672 CACAACCCTCGATCCGGTCTAATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATG
1 CACAACCCTCGATCCGGTCTAAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATG
* * * ** * * *
13285737 AAATGAGCATTCGGGCGCTGAGTCAGCCGGAGAGGCATAATACGCAAGCCAAGGATCGGCCCGAT
66 AAACGAGCATGCGGGCGCTCAACCAGCCGGAGAGGCAGAATACACAAGCCAAGGATCGACCCGAT
*
13285802 CCCCCTCTGCGTGCTACCGGTCCCACTAC
131 CCCCC-CTACGTGCTACCGGTCCCACTAC
* *
13285831 CACAACCCTCGGTCCGG-CTAGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCA
1 CACAACCCTCGATCCGGTCTA-AGCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * * * * * *
13285894 TGAAACGGGCGTGCGGGTGCTCAACCGGCCGGATAGGCAGAATGCATAAGTCAGGGATCGACCTG
64 TGAAACGAGCATGCGGGCGCTCAACCAGCCGGAGAGGCAGAATACACAAGCCAAGGATCGACCCG
* ** * ** *
13285959 GTCCCCCCTACGTGCTGTCGATCCTGCTGC
129 ATCCCCCCTACGTGCTACCGGTCCCACTAC
** * * * * * *
13285989 CGTAACCCTAGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 CACAACCCTCGATCCGGTCTAAGCTTAGACTGGGAATGAACTCCCTATGC
13286039 TTAGACTGGG
Statistics
Matches: 164, Mismatches: 40, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
157 1 0.01
158 56 0.34
159 106 0.65
160 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (158 bp):
CACAACCCTCGATCCGGTCTAAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATG
AAACGAGCATGCGGGCGCTCAACCAGCCGGAGAGGCAGAATACACAAGCCAAGGATCGACCCGAT
CCCCCCTACGTGCTACCGGTCCCACTAC
Found at i:13286048 original size:26 final size:26
Alignment explanation
Indices: 13286012--13286064 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13286002 CCAGTCTGAT
13286012 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13286038 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13286064 C
1 C
13286065 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13286440 original size:184 final size:184
Alignment explanation
Indices: 13286220--13286589 Score: 454
Period size: 184 Copynumber: 2.0 Consensus size: 184
13286210 TCCGACTGGG
* * *
13286220 GCTTAGACATGGAATGAACTTCGTATGGCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
1 GCTTAGACATCGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
* * * ** * *
13286285 CTGACCGGAGAGGTAGAATGCGTAAGCCGAGGATCGGCCCGATCCCCCCTA-TGTGCTGTCGATC
66 CCGACCGGAGAGGCAGAAAGCAAAAGCCGAGGACCGGCCCGATCCCCCC-AGCGTGCTGTCGATC
* * * *
13286349 CTGCTGCTGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
130 CTGCTACCGCAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
* * * * ** *
13286404 GCTTAGACATCGATTGAACTTCATATGCCTAAGCCAACCCATGAAATGAGCGTTCGGGTGCTCAG
1 GCTTAGACATCGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
** * * * *
13286469 CCGGTCGGAGAGGCAGAAAGTAAAAGTCGGGGACCGGCCCGATCCCCCCAGCGTGCTGTCGATCT
66 CCGACCGGAGAGGCAGAAAGCAAAAGCCGAGGACCGGCCCGATCCCCCCAGCGTGCTGTCGATCC
* * *
13286534 TGCTACCGCAACCCTCTGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTAT
131 TGCTACCGCAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
13286588 GC
1 GC
13286590 CTAAGTCAAC
Statistics
Matches: 155, Mismatches: 30, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
183 1 0.01
184 154 0.99
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATCGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
CCGACCGGAGAGGCAGAAAGCAAAAGCCGAGGACCGGCCCGATCCCCCCAGCGTGCTGTCGATCC
TGCTACCGCAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:13287639 original size:26 final size:26
Alignment explanation
Indices: 13287602--13287680 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
13287592 GGCTCAAACT
* *
13287602 CTTAGACTTGGAATCAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
13287628 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
13287654 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
13287680 C
1 C
13287681 CTAAGCCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:13288019 original size:26 final size:26
Alignment explanation
Indices: 13287972--13288021 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
13287962 GATTTAATCG
**
13287972 TAGACTGGGAATGAACTTCGTATGGT
1 TAGACTGGGAATGAACACCGTATGGT
**
13287998 TAGACTGGGGTTGAACACCGTATG
1 TAGACTGGGAATGAACACCGTATG
13288022 CCTAAGTCAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACACCGTATGGT
Found at i:13288376 original size:26 final size:26
Alignment explanation
Indices: 13288337--13288415 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
13288327 CTGGTCTAAT
**
13288337 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
13288363 CTTAGACATA-GAATGAACTCCGTATG
1 CTTAGACA-AGGAATGAACTCCGTATG
13288389 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
13288415 C
1 C
13288416 CTATGCCAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.02
26 48 0.98
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:13288860 original size:26 final size:26
Alignment explanation
Indices: 13288831--13288881 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13288821 TGGTCCGATT
13288831 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
13288857 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
13288882 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:13289723 original size:156 final size:155
Alignment explanation
Indices: 13289326--13289723 Score: 379
Period size: 156 Copynumber: 2.5 Consensus size: 155
13289316 GGGACCAGTT
* * * * *
13289326 CGGTCCCCCCTGCGTGCTTTCGATCCTGCTGTCGCAACCCTCGGTTCGGTCCGATCTTAGACTGG
1 CGGTCCCCCTTGCGTGC-TGCGATCCTGCTGCCGCAACCCTCGG-TCCGTTCGATCTTAGACTGG
* * * * * * **
13289391 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGCTGAGCCGGTCGGAGA
64 GAATGAACTCCGTATG-CTAAGCCAACCCACGAAATCAACGTGCAGCCGCTCAGCCGAACGGAGA
* *
13289456 GGCAGAATGCGCAAGCCGAGGATTGACC
128 GGCAGAATACGCAAGCCGAGGATCGACC
* * * * * * **
13289484 CGGTCCCCCTCGACGTGCTGCTAGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACAT
1 CGGTCCCCCTTG-CGTGCTGCGA-TCCTGCTGCCGCAACCCTCGGTCCG-TTCGATCTTAGAC-T
** *
13289549 -GGAATGAACTCCCAATGCTAAGCCAACCCATGAAA-CAAGCGTGCAGCCGCTCAGCC-AACGGA
62 GGGAATGAACTCCGTATGCTAAGCCAACCCACGAAATCAA-CGTGCAGCCGCTCAGCCGAACGGA
* * *
13289611 GAGGCAGAATACGCAAGTCGGGGATCGGCC
126 GAGGCAGAATACGCAAGCCGAGGATCGACC
** * * *
13289641 CGGTCCTTCTTGCGTGCTGACGATCCTGCTGCCGTAACCCTCGATCCAGTTTGATCTTAGACTGG
1 CGGTCCCCCTTGCGTGCTG-CGATCCTGCTGCCGCAACCCTCGGTCC-GTTCGATCTTAGACTGG
13289706 GAATGAACTCCGTATGCT
64 GAATGAACTCCGTATGCT
13289724 TAGACTGGGG
Statistics
Matches: 189, Mismatches: 43, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
155 1 0.01
156 53 0.28
157 43 0.23
158 46 0.24
159 45 0.24
160 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (155 bp):
CGGTCCCCCTTGCGTGCTGCGATCCTGCTGCCGCAACCCTCGGTCCGTTCGATCTTAGACTGGGA
ATGAACTCCGTATGCTAAGCCAACCCACGAAATCAACGTGCAGCCGCTCAGCCGAACGGAGAGGC
AGAATACGCAAGCCGAGGATCGACC
Found at i:13289732 original size:26 final size:26
Alignment explanation
Indices: 13289696--13289748 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13289686 CCAGTTTGAT
13289696 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13289722 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13289748 C
1 C
13289749 CTAAGTCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13290338 original size:11 final size:11
Alignment explanation
Indices: 13290322--13290346 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
13290312 GGCTCTCCGG
13290322 CGATGCTTCGA
1 CGATGCTTCGA
13290333 CGATGCTTCGA
1 CGATGCTTCGA
13290344 CGA
1 CGA
13290347 CATGCCCAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (11 bp):
CGATGCTTCGA
Found at i:13292783 original size:26 final size:26
Alignment explanation
Indices: 13292754--13292806 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13292744 CCTGTCCGAT
13292754 CTTAGACT-AGGATTGAACTCCGTATG
1 CTTAGACTGAGGA-TGAACTCCGTATG
*
13292780 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
13292806 C
1 C
13292807 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:13293243 original size:168 final size:170
Alignment explanation
Indices: 13292865--13293413 Score: 446
Period size: 160 Copynumber: 3.3 Consensus size: 170
13292855 GGCCGGTCGA
* * * *
13292865 AGAGGCATAATGCAAAAGCCGAGGATCTGCCTGGTCCCCCTCTGCGTGCTGCTGATCCCATTACC
1 AGAGGCATAATGCACAAGCCGGGGATCGGCCTGGTCCCCC-CTGCGTGCTGCTGATCCCACTACC
* *
13292930 AGTCCTGCTATCACAACCCTCGATCCGGTTGGAGCTTAGACATGGAATGAACTCCGTATGCCTAA
65 AGTCCTACTATCACAACCCTCGATCCGGTTGGAGCTTAGACATGGAATGAACTCCATATGCCTAA
* * * *
13292995 GCCAACCCACGAAACGAGTGTGCGGGCGCTCAACCAGTCGG
130 GCCAACCCACGAAACGAGCGTACGGGCGCTCAACCAGCCAG
* ** * * ** * **
13293036 AGAGGCAGAATGTGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGC-GATCCTGCTGCTG
1 AGAGGCATAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGCTGATCCCACTACCA
* * * * *
13293100 GTCCTACTGTCGCAACCCTCGGTCCGGTCT-GATCTTAGAC-TGTGAATGAACTTCATATGCCTA
66 GTCCTACTATCACAACCCTCGATCCGGT-TGGAGCTTAGACATG-GAATGAACTCCATATGCCTA
* * * * *
13293163 AG-CAACCTATGAAATGAGCGTACGGGCGCTGAGCC-GACCAG
129 AGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCAG-CCAG
* *
13293204 AGAGGCATAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCT-C-TGC-G-TG----CA--GCCG
1 AGAGGCATAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGCTGATCCCACTACCA
* ** * * * *
13293259 GTCCCACTGCCACAACCCTCAATCTGGCTAGG-GCTTAGACATGGAATGAACTCCCTATGCCTAA
66 GTCCTACTATCACAACCCTCGATCCGG-TTGGAGCTTAGACATGGAATGAACTCCATATGCCTAA
* * * *** * * *
13293323 GCCAACCCACGAAATGGGCTTGTTGGCGCTCAGCCGGCCGG
130 GCCAACCCACGAAACGAGCGTACGGGCGCTCAACCAGCCAG
* * * * * * *
13293364 AAAGGCAAAATGCATAAGTCGGGGATCGACCTGGTCCTCCTTGCGTGCTG
1 AGAGGCATAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTG
13293414 TCTATCCTAC
Statistics
Matches: 302, Mismatches: 64, Indels: 32
0.76 0.16 0.08
Matches are distributed among these distances:
159 51 0.17
160 67 0.22
161 2 0.01
162 3 0.01
163 1 0.00
165 2 0.01
166 3 0.01
167 2 0.01
168 67 0.22
169 60 0.20
170 12 0.04
171 32 0.11
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.20
Consensus pattern (170 bp):
AGAGGCATAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGCTGATCCCACTACCA
GTCCTACTATCACAACCCTCGATCCGGTTGGAGCTTAGACATGGAATGAACTCCATATGCCTAAG
CCAACCCACGAAACGAGCGTACGGGCGCTCAACCAGCCAG
Found at i:13293456 original size:158 final size:157
Alignment explanation
Indices: 13292964--13293470 Score: 367
Period size: 168 Copynumber: 3.1 Consensus size: 157
13292954 CCGGTTGGAG
* * * * *
13292964 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAAC
1 CTTAGAC-TGGAATGAACTCCATATGCCTAAG-CAACCCACGAAATGAGCGTACGGGCGCTCAGC
* * * * ** * * *
13293029 C-AGTCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGC-TGCGATCC
64 CGA-CCAGAAAGGCAAAATGCACAAGCCGGGGATCGACCTGGTCCCCCCT-C-TGCGTGC-A---
* * * *
13293092 TGCTGCTGGTCCTACTGTCGCAACCCTCGGTCCGGTCTGAT
122 -GC--C-GATCCTACTGTCGCAACCCTAGATCTGGTC-GAT
* * * *
13293133 CTTAGACTGTGAATGAACTTCATATGCCTAAGCAACCTATGAAATGAGCGTACGGGCGCTGAGCC
1 CTTAGACTG-GAATGAACTCCATATGCCTAAGCAACCCACGAAATGAGCGTACGGGCGCTCAGCC
* * * *
13293198 GACCAGAGAGGCATAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTCTGCGTGCAGCCGGTCC
65 GACCAGAAAGGCAAAATGCACAAGCCGGGGATCGACCTGGTCCCCCCTCTGCGTGCAGCCGATCC
* * * * **
13293263 CACTGCCACAACCCTCA-ATCTGGCTAGGG
130 TACTGTCGCAACCCT-AGATCTGG-TCGAT
* * * ***
13293292 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCTTGTTGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCATATGCCTAAG-CAACCCACGAAATGAGCGTACGGGCGCTCAGC
* * * * * * * *
13293357 CGGCCGGAAAGGCAAAATGCATAAGTCGGGGATCGACCTGGT-CCTCCT-TGCGTGCTGTCTATC
64 CGACCAGAAAGGCAAAATGCACAAGCCGGGGATCGACCTGGTCCCCCCTCTGCGTGCAGCCGATC
*
13293420 CTACTATCGCAACCCTAGATCTGGTTCGAT
129 CTACTGTCGCAACCCTAGATCTGG-TCGAT
13293450 CTTAGACTGGGAATGAACTCC
1 CTTAGACT-GGAATGAACTCC
13293471 GTATTCTTAG
Statistics
Matches: 274, Mismatches: 55, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
157 2 0.01
158 50 0.18
159 54 0.20
160 63 0.23
162 2 0.01
166 4 0.01
167 4 0.01
168 67 0.24
169 28 0.10
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCATATGCCTAAGCAACCCACGAAATGAGCGTACGGGCGCTCAGCCG
ACCAGAAAGGCAAAATGCACAAGCCGGGGATCGACCTGGTCCCCCCTCTGCGTGCAGCCGATCCT
ACTGTCGCAACCCTAGATCTGGTCGAT
Found at i:13293491 original size:26 final size:26
Alignment explanation
Indices: 13293449--13293500 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13293439 TCTGGTTCGA
13293449 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
13293475 TCTTAGACTAGGG-ATGAACTCCGTAT
1 TCTTAGACT-GGGAATGAACTCCGTAT
13293501 GCCTCTATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:13294222 original size:26 final size:26
Alignment explanation
Indices: 13294184--13294236 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13294174 GGCTCAAAAT
13294184 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13294210 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
13294236 C
1 C
13294237 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13295600 original size:26 final size:26
Alignment explanation
Indices: 13295564--13295616 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13295554 CCGGTCTGAT
13295564 CTTAGACTAGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
*
13295590 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
13295616 C
1 C
13295617 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:13296325 original size:26 final size:25
Alignment explanation
Indices: 13296286--13296337 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
13296276 GGCTCAAAAT
13296286 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
13296311 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
13296337 C
1 C
13296338 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:13303594 original size:11 final size:11
Alignment explanation
Indices: 13303574--13303606 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
13303564 CGATTAGGCT
*
13303574 CTCCGGCGATG
1 CTCCGACGATG
13303585 CTCCGACGATG
1 CTCCGACGATG
13303596 CTCCGACGATG
1 CTCCGACGATG
13303607 GTGCCCTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.15, C:0.36, G:0.30, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:13303714 original size:26 final size:26
Alignment explanation
Indices: 13303676--13303728 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13303666 GGCTCAAAAT
*
13303676 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13303702 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13303728 C
1 C
13303729 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13303991 original size:159 final size:158
Alignment explanation
Indices: 13303702--13304483 Score: 630
Period size: 159 Copynumber: 4.9 Consensus size: 158
13303692 ACTTCGTATG
* *
13303702 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACGCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * *
13303767 CGATTGGAGAGGCAGAATGCTCAAGCC-AGGGATCGATCCAGTCCCCCCCAGCGTGTTGTCAATC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCAGTCCCTCTCTGCGTGCTGTCAATC
13303831 CTACTGCCGCAACCCTTCGTCCGGTCTGAT
130 CTACTGCCGCAACCC-TCGTCCGGTCTGAT
* * * * * *
13303861 CTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
13303925 CCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCAGTCCCTCTCTGCGTGCTGCCAATC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCTCTCTGCGTGCTGTCAATC
* * ** **
13303990 CTGCTGCCACAACCCTCGATTTGGT-TGGGG
130 CTACTGCCGCAACCCTCG-TCCGGTCT-GAT
* *
13304020 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCAG
** * * * *
13304084 CCGACCGGAGAGGCAGAATATGCAAGCCGAGGATTGGCCCGGTCCCTCT-TGCGTGCTGTCGATC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCTCTCTGCGTGCTGTCAATC
* * * *
13304148 CTACTGTCGTAACCCTCGGTCCGATCCGAT
130 CTACTGCCGCAACCCTC-GTCCGGTCTGAT
* * * *
13304178 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGAGCGCTCAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * ** * * *
13304242 CTGGTCGGAGAGGCATAATGCATAAGCC-AGGGATC-AGCCCGGTCCCCCTCTACGTGCTGTCGA
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGA-CCCAGTCCCTCTCTGCGTGCTGTC-A
* * * * **
13304305 TCCCGCTGCCGGTCCTGTTGCCACAACCCTTGGTCCGGT-TAGGG
127 -----AT-CC--TAC---TGCCGCAACCC-TCGTCCGGTCT-GAT
* * * * ** * *
13304349 CTTAGACATGGAATGAACTCCGTATACCTAAGCCAACACACGAAATGAGCTTAAGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
13304414 CGATCGGAGAGGTAAAATGCGCAAGCCAAGGATCGACCCAGTCCC-CCCTGCGTGCTGTCGATCT
66 CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCTCTCTGCGTGCTGTCAATCC
13304478 TACTGC
131 TACTGC
13304484 TGGACCTACT
Statistics
Matches: 488, Mismatches: 105, Indels: 61
0.75 0.16 0.09
Matches are distributed among these distances:
157 2 0.00
158 130 0.27
159 229 0.47
160 2 0.00
161 2 0.00
163 1 0.00
164 1 0.00
165 1 0.00
166 2 0.00
168 2 0.00
170 12 0.02
171 100 0.20
172 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCTCTCTGCGTGCTGTCAATCC
TACTGCCGCAACCCTCGTCCGGTCTGAT
Found at i:13304300 original size:317 final size:318
Alignment explanation
Indices: 13303701--13304483 Score: 783
Period size: 317 Copynumber: 2.4 Consensus size: 318
13303691 AACTTCGTAT
* * *
13303701 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACGCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* ** * * *
13303766 TCGATTGGAGAGGCAGAATGCTCAAGCCAGGGATCGATCCAGTCCCCCCCAGCGTGTTGTCAATC
66 CCGACCGGAGAGGCAGAATGATCAAGCCAGGGATCGACCCAGTCCCCCCCAGCGTGCTGTCAATC
* *
13303831 CTACTGCCGCAACCCTTCGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCA
131 CTACTGCCGCAACCCTTCGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCA
* * *
13303896 ACCCACGAAACGAGCGTGCAGGCACTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCG
196 ACCCACGAAACGAGCGTGCAGGCACTCAACCGGCCGAAGAGGCATAATGCACAAGCCGAGGATCG
* * *
13303961 ACCCAGTCCCTCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGATTTGGTTGGG
261 ACCCAGTCCCCCTCTACGTGCTGCCAATCCCGCTGCCACAACCCTCGATTTGGTTGGG
13304019 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCA
* * * * ** *
13304083 ACCGACCGGAGAGGCAGAAT-ATGCAAGCC-GAGGATTGGCCCGGT-CCCTCTTGCGTGCTGTCG
65 ACCGACCGGAGAGGCAGAATGAT-CAAGCCAG-GGATCGACCCAGTCCCCCCCAGCGTGCTGTCA
* * * *
13304145 ATCCTACTGTCGTAACCC-TCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
128 ATCCTACTGCCGCAACCCTTC-GTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCATAA
* * * * * *
13304209 GTCAACCTACGAAACGAGCGTGC-GAGCGCTCAACTGGTCGGAGAGGCATAATGCATAAGCC-AG
192 GTCAACCCACGAAACGAGCGTGCAG-GCACTCAACCGGCCGAAGAGGCATAATGCACAAGCCGA-
* * * *
13304272 GGATC-AGCCCGGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCGGTCCTGTTGCCACAACCCTT
255 GGATCGA-CCCAGTCCCCCTCTACGTGCTGCCAAT----C--CC-G--C---TGCCACAACCCTC
* ** *
13304336 GGTCCGGTTAGG
307 GATTTGGTTGGG
* * * * * ** * *
13304348 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACACACGAAATGAGCTTAAGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * ** * * *
13304413 TCGATCGGAGAGGTAAAATGCGCAAGCCAAGGATCGACCCAGT-CCCCCCTGCGTGCTGTCGATC
66 CCGACCGGAGAGGCAGAATGATCAAGCCAGGGATCGACCCAGTCCCCCCCAGCGTGCTGTCAATC
*
13304477 TTACTGC
131 CTACTGC
13304484 TGGACCTACT
Statistics
Matches: 378, Mismatches: 65, Indels: 33
0.79 0.14 0.07
Matches are distributed among these distances:
316 5 0.01
317 148 0.39
318 91 0.24
321 1 0.00
323 1 0.00
324 1 0.00
326 1 0.00
329 129 0.34
330 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (318 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGACCGGAGAGGCAGAATGATCAAGCCAGGGATCGACCCAGTCCCCCCCAGCGTGCTGTCAATC
CTACTGCCGCAACCCTTCGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCA
ACCCACGAAACGAGCGTGCAGGCACTCAACCGGCCGAAGAGGCATAATGCACAAGCCGAGGATCG
ACCCAGTCCCCCTCTACGTGCTGCCAATCCCGCTGCCACAACCCTCGATTTGGTTGGG
Found at i:13304470 original size:329 final size:316
Alignment explanation
Indices: 13303701--13304483 Score: 872
Period size: 329 Copynumber: 2.4 Consensus size: 316
13303691 AACTTCGTAT
*
13303701 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACGCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAA-GAGCGTGCGGGCGCTCAG
* * * * * * *
13303766 TCGATTGGAGAGGCAGAATGCTCAAGCCAGGGATCGATCCAGTCCCCCCCAGCGTGTTGTCAATC
65 TCGATCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCAGT-CCCCCCTGCGTGCTGTCGATC
* *
13303831 CTACTGCCGCAACCCTTCGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCA
129 CTACTGCCGCAACCCTTCGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCA
* * *
13303896 ACCCACGAAACGAGCGTGCAGGCACTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCG
194 ACCCACGAAACGAGCGTGCAGGCACTCAACCGGCCGAAGAGGCATAATGCACAAGCCGAGGATCG
** *
13303961 ACCCAGTCCCTCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGATTTGGTTGGG
259 ACCCAGTCCCTCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGATCCGGTTAGG
* * * *
13304019 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAAGA-GCGTGCGGGCGCTCAG
* * ** * * * * * *
13304084 CCGACCGGAGAGGCAGAATATGCAAGCCGAGGATTGGCCCGGTCCCTCTTGCGTGCTGTCGATCC
65 TCGATCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCC
* * * *
13304149 TACTGTCGTAACCC-TCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
130 TACTGCCGCAACCCTTC-GTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCA
* * * * * *
13304213 ACCTACGAAACGAGCGTGC-GAGCGCTCAACTGGTCGGAGAGGCATAATGCATAAGCC-AGGGAT
194 ACCCACGAAACGAGCGTGCAG-GCACTCAACCGGCCGAAGAGGCATAATGCACAAGCCGA-GGAT
* ** * * *
13304276 C-AGCCCGGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCGGTCCTGTTGCCACAACCCTTGGTC
257 CGA-CCCAGT---CC-CT-C-T-CTG-CG-T---GCTGCCAATCCTGCTGCCACAACCCTCGATC
13304340 CGGTTAGG
309 CGGTTAGG
* * ** *
13304348 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACACACGAAATGAGCTTAAGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAA-GAGCGTGCGGGCGCTCAG
* * *
13304413 TCGATCGGAGAGGTAAAATGCGCAAGCCAAGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCT
65 TCGATCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCC
13304478 TACTGC
130 TACTGC
13304484 TGGACCTACT
Statistics
Matches: 379, Mismatches: 68, Indels: 25
0.80 0.14 0.05
Matches are distributed among these distances:
316 5 0.01
317 129 0.34
318 90 0.24
320 2 0.01
321 2 0.01
322 1 0.00
323 1 0.00
324 3 0.01
325 2 0.01
326 1 0.00
329 142 0.37
330 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAAGAGCGTGCGGGCGCTCAGT
CGATCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCT
ACTGCCGCAACCCTTCGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAAC
CCACGAAACGAGCGTGCAGGCACTCAACCGGCCGAAGAGGCATAATGCACAAGCCGAGGATCGAC
CCAGTCCCTCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGATCCGGTTAGG
Found at i:13304999 original size:513 final size:520
Alignment explanation
Indices: 13304019--13305000 Score: 1187
Period size: 513 Copynumber: 1.9 Consensus size: 520
13304009 TTTGGTTGGG
13304019 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAA
* * * * * * * * *
13304084 CCGACCGGAGAGGCAGAATATGCAAGCCGAGGATTGGCCCGGTCCCTCTTGCGTGCTGTCGATCC
66 CCGACCAGAGAGGCAAAATATGCAAGCAGAGGATCGACACGGTCCCCCCTGCGTGCTGTCAATCC
** * *
13304149 TACTGTCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
131 TACTACCGAAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAA
* * * ** * * *
13304214 CCTACGAAACGAGCGTGCGAGCGCTCAACTGGTCGGAGAGGCATAATGCATAAGCCAGGGATCAG
196 CCCACGAAACAAGCGTGCGAGCGCTCAACCGACCGGAGAGGCATAATACACAAGCCAGGGATCAA
* ** ** *
13304279 CCCGGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCGGTCCTGTTGCCACAACCCTTGGTCCGGT
261 CCCGGT--CCCTC-ACGTGCTGTCGAT--CGCTACCGGTCCTACTGCCACAACCCTCAGTCCGGC
* * *
13304344 TAGGGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACACACGAAATGAGCTTAAGGGTGC
321 TAGGGCCTAGACATGGAATGAACTCCCTATACCTAAGCCAACACACGAAATGAGCGTAAGGGTGC
* * * * *
13304409 TCAGTCGATCGGAGAGGTAAAATGCGCAAGCCAAGGATCGACCCAGTCCCCCCTGCGTGCTGTCG
386 TCAGCCGACCGGAGAGGCAAAATGCGCAAGCCAAGGATCGACCCAGTCCCCCCTGCGTGCTGCCC
*
13304474 ATCTTACTGCTGGACCTACTATCGCAACCCTTAGTCCGATCCGATCTTAGAGTGGGAATGAACTC
451 ATCCTACTGCTGGACCTACTATCGCAACCCTTAGTCCGATCCGATCTTAGAGTGGGAATGAACTC
13304539 CGTAT
516 CGTAT
*** * *
13304544 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAA-TGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAG-GCGTGCGGGCGCTCA
** * *
13304608 GTCGGCCAGAGAGGCAAAATGA-GCAAGCA-AGGGATCGACACGGTCCCCCCCTGTGTGCTGTCA
65 ACCGACCAGAGAGGCAAAAT-ATGCAAGCAGA-GGATCGACACGGT-CCCCCCTGCGTGCTGTCA
* * * *
13304671 ATCTTGCTACCGAAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATACCTAAG
127 ATCCTACTACCGAAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATACCTAAG
* * * * * * *
13304736 TCAACCCATGAAACAAGCGTGCGGGTGCTGAGCCGACCGGAGAGGCATAATACACAAGTCGGGGA
192 TCAACCCACGAAACAAGCGTGCGAGCGCTCAACCGACCGGAGAGGCATAATACACAAGCCAGGGA
*
13304801 TCAACCCGGT-CC-C-C-T-CTG-CG-T-GCTACCGGTCCTACTGCCACAACCCTCAGTCTGGCT
257 TCAACCCGGTCCCTCACGTGCTGTCGATCGCTACCGGTCCTACTGCCACAACCCTCAGTCCGGCT
* * * * * **
13304858 GGGGCCTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGGGTGCT
322 AGGGCCTAGACATGGAATGAACTCCCTATACCTAAGCCAACACACGAAATGAGCGTAAGGGTGCT
* *
13304923 CAGCC-AGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCTGCGTGCTGCCC
387 CAGCCGA-CCGGAGAGGCAAAATGCGCAAGCCAAGGATCGACCCAGTCCCCCCTGCGTGCTGCCC
*
13304987 ATCCTGCTGCTGGA
451 ATCCTACTGCTGGA
13305001 ACCCTCGGTT
Statistics
Matches: 385, Mismatches: 67, Indels: 22
0.81 0.14 0.05
Matches are distributed among these distances:
512 1 0.00
513 151 0.39
516 1 0.00
517 2 0.01
518 3 0.01
519 1 0.00
520 1 0.00
522 1 0.00
523 2 0.01
524 2 0.01
525 88 0.23
526 132 0.34
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (520 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAA
CCGACCAGAGAGGCAAAATATGCAAGCAGAGGATCGACACGGTCCCCCCTGCGTGCTGTCAATCC
TACTACCGAAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAA
CCCACGAAACAAGCGTGCGAGCGCTCAACCGACCGGAGAGGCATAATACACAAGCCAGGGATCAA
CCCGGTCCCTCACGTGCTGTCGATCGCTACCGGTCCTACTGCCACAACCCTCAGTCCGGCTAGGG
CCTAGACATGGAATGAACTCCCTATACCTAAGCCAACACACGAAATGAGCGTAAGGGTGCTCAGC
CGACCGGAGAGGCAAAATGCGCAAGCCAAGGATCGACCCAGTCCCCCCTGCGTGCTGCCCATCCT
ACTGCTGGACCTACTATCGCAACCCTTAGTCCGATCCGATCTTAGAGTGGGAATGAACTCCGTAT
Found at i:13305004 original size:158 final size:158
Alignment explanation
Indices: 13304545--13305120 Score: 581
Period size: 158 Copynumber: 3.6 Consensus size: 158
13304535 ACTCCGTATG
* * *
13304545 CTTAGACAT-GGAATGAACTTTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 CTTAGACATGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * * * * * *
13304609 TCGGCCAGAGAGGCAAAATGAGCAAGCAAGGGATCGACACGGTCCCCCCCTGTGTGCTGTCAATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGT-CCCCCCTGCGTGCTGCCAATC
* * * *
13304674 TTGCTACCGAAACCCTCGGTCCGATCTGAT
130 CTGCTGCCGAAACCCTCGGTCTG-GCTGAT
* * * *
13304704 CTTAGAC-TGGGAATGAACTCTGTATACCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTGAG
1 CTTAGACATGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * * * * * **
13304768 CCGACCGGAGAGGCATAATACACAAGTCGGGGATCAACCCGGTCCCCTCTGCGTGCTACCGGTCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATCC
* * **
13304833 TACTGCC-ACAACCCTCAGTCTGGCTGGGG
131 TGCTGCCGA-AACCCTCGGTCTGGCT-GAT
* ** * * *
13304862 CCTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGGGTGCTCAG
1 CTTAGACATGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* *
13304926 CC-AGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCTGCGTGCTGCCCATC
66 CCGA-CCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATC
* * *
13304990 CTGCTGCTGGAACCCTCGGT-TCGGTCCGAT
130 CTGCTGCCGAAACCCTCGGTCT-GG-CTGAT
** *
13305020 CTTAGA-ATGGGAATGAACTCTGTATGCCTAAATCAACCCATGAAACGAGCGTGCGGGTGCTCAA
1 CTTAGACATGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * *
13305084 CTGACTGGAGAGGCAGGATGCGCAAGCCAGGGATCGA
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGA
13305121 ACGGGTGTAA
Statistics
Matches: 334, Mismatches: 73, Indels: 21
0.78 0.17 0.05
Matches are distributed among these distances:
157 7 0.02
158 238 0.71
159 89 0.27
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATCC
TGCTGCCGAAACCCTCGGTCTGGCTGAT
Found at i:13306250 original size:26 final size:26
Alignment explanation
Indices: 13306214--13306266 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13306204 TCGATTCGAT
*
13306214 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
13306240 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13306266 C
1 C
13306267 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13306606 original size:26 final size:26
Alignment explanation
Indices: 13306555--13306607 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13306545 CCGGTCTGAT
*
13306555 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
13306581 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13306607 C
1 C
13306608 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13307290 original size:185 final size:184
Alignment explanation
Indices: 13306977--13307341 Score: 432
Period size: 185 Copynumber: 2.0 Consensus size: 184
13306967 CCCGGCTAGG
* * * * * *
13306977 GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAGCCTACGAAACGAGCATGCAGGCCCTCAG
1 GCTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAACGAGAATG-AGGCACTCAG
* *
13307042 CCGACCGGAGAGGCAGAATGCACAAGTCAGGGATCAGCCCGATCCCCCCCTGCGTGTTGTCGATC
65 CCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCCCCTGCGTGCTGTCGATC
* * * *
13307107 CTGCTACCGTAACCCTCGATCTGGTTCGATCTTAGACTGGGAATCAACTCCGCAT
130 CTGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATCAACTCCGCAT
* *
13307162 GCTTAGACATGGAATGAACTCCGTAAGCCTAGGCCAACCCATGAAACGAACGGAATG-GGCACTC
1 GCTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAACG-A--GAATGAGGCACTC
** *** *
13307226 AGCCGGTCGGAGAGGCAGAATGTGTAAGCC-GAGGATC-GACCCGAT-CCCCCCTGTGTGCTGTC
63 AGCCGACCGGAGAGGCAGAATGCACAAGCCAG-GGATCAG-CCCGATCCCCCCCTGCGTGCTGTC
* * * *
13307288 GATCCTGCTGCCGCAACCCTCGGTCCGATCCGGTCTTAGACTGGGAATGAACTC
126 GATCCTGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATCAACTC
13307342 TGTATGCCTA
Statistics
Matches: 151, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
185 105 0.70
186 42 0.28
188 4 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAACGAGAATGAGGCACTCAGC
CGACCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCCCCTGCGTGCTGTCGATCC
TGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATCAACTCCGCAT
Found at i:13307579 original size:159 final size:157
Alignment explanation
Indices: 13307162--13307589 Score: 407
Period size: 159 Copynumber: 2.7 Consensus size: 157
13307152 AACTCCGCAT
* * *
13307162 GCTTAGACATGGAATGAACTCCGTAAGCCTAGGCCAACCCATGAAACGAACGGAATG--GGCACT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG---GGCATGCAGGCACT
* * * * * ***
13307225 CAGCCGGTCGGAGAGGCAGAATGTGTAAGCCGAGGATCGACCCGATCCCCCCTGTGTGCTGTCGA
63 CAG-CAGACGGAGAGGCAGAATGCGAAAGTCGAGGATCGACCCGATCCCCCCTACATGCTGTCGA
** *
13307290 TCCTGCTGCCGCAACCCTCGGTCCGATCCGG
127 TCCCACTGCCACAACCCTCGGTCCGATCCGG
* * * * * *
13307321 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCATGCAGGCACTCA
* * * * * *
13307385 GCTGACTGGAGAGGCATAATGCACAAACT-GAGGATCGACCCGGTCTCCCTCTACATGCTGTCGA
65 GCAGAC-GGAGAGGCAGAATGC-GAAAGTCGAGGATCGACCCGATC-CCCCCTACATGCTGTCGA
* * *
13307449 TCCCACTGCCACAACCCTCTGTTCGA-CTGGG
127 TCCCACTGCCACAACCCTCGGTCCGATC-CGG
* * * * *
13307480 GCTTAGACATGGAATGAACTCCCTGTGCCTAAGCCAACCCACGAAACGGGCATGCAAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCATGCAGGCACTCAG
* *
13307545 TCAGACGGAGAGGCAGAATGCGAAAGTCGGGGATCGGCCCGATCC
66 -CAGACGGAGAGGCAGAATGCGAAAGTCGAGGATCGACCCGATCC
13307590 TACCTGCGTG
Statistics
Matches: 213, Mismatches: 46, Indels: 21
0.76 0.16 0.08
Matches are distributed among these distances:
156 3 0.01
157 3 0.01
158 43 0.20
159 159 0.75
160 5 0.02
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCATGCAGGCACTCAG
CAGACGGAGAGGCAGAATGCGAAAGTCGAGGATCGACCCGATCCCCCCTACATGCTGTCGATCCC
ACTGCCACAACCCTCGGTCCGATCCGG
Found at i:13308768 original size:26 final size:26
Alignment explanation
Indices: 13308730--13308782 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13308720 TCGGTCTAAT
13308730 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13308756 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13308782 C
1 C
13308783 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13309127 original size:158 final size:158
Alignment explanation
Indices: 13308915--13309255 Score: 345
Period size: 158 Copynumber: 2.2 Consensus size: 158
13308905 GGTTCGATCA
* * * *
13308915 TAGACTAG-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACATGCGGGCGTTGAGCT
1 TAGACT-GCGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACATGCGGGCGCTCAGCC
* * * * *
13308979 GACCGGA-AGGCATAATGCGTAAGTTAAGG-ATCTGCCCGGTCCCCCTCTATGTGCTATCGGTCC
65 AACCGGAGAGGCAGAATGCGTAAG-TAAGGAATCAGCCCGGTCCCCC-CTACGTGCTATCGATCC
*
13309042 CGCTGCCACAACCCTCGGTCC-GACTGGGGCT
128 CGCTGCCACAACCCTCGGTCCAGACT-GAGCT
** * *
13309073 TAGACAT-CGAATGAACTCCGTATGCCTAAGCCAACCCTTGAAACCG-GCGA-GCGGGTGCTCAG
1 TAGAC-TGCGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-CGAAC-ATGCGGGCGCTCAG
* * * * *
13309135 CCAATCGGAGAGGCAGAATGCGTAAGTCAGGAATCAGCCCGGTCCCTCCTGCGTGCTGTCGATCC
63 CCAACCGGAGAGGCAGAATGCGTAAGTAAGGAATCAGCCCGGTCCCCCCTACGTGCTATCGATCC
* * * * *
13309200 TGCTGCCATAACCTTCGGTCCAGTCTGATCT
128 CGCTGCCACAACCCTCGGTCCAGACTGAGCT
*
13309231 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGCGAATGAACTCCGTATGC
13309256 TTAGACTAGG
Statistics
Matches: 150, Mismatches: 25, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
157 1 0.01
158 113 0.75
159 36 0.24
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
TAGACTGCGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACATGCGGGCGCTCAGCCA
ACCGGAGAGGCAGAATGCGTAAGTAAGGAATCAGCCCGGTCCCCCCTACGTGCTATCGATCCCGC
TGCCACAACCCTCGGTCCAGACTGAGCT
Found at i:13309270 original size:26 final size:26
Alignment explanation
Indices: 13309229--13309281 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13309219 CCAGTCTGAT
13309229 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13309255 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
13309281 C
1 C
13309282 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13309639 original size:26 final size:26
Alignment explanation
Indices: 13309600--13309650 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13309590 GGTCCGATCT
*
13309600 TAGACTGGGAATGAACTTCGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
13309626 TAGACATGGG-ATGAACTCCGTATGC
1 TAGAC-TGGGAATGAACTCCGTATGC
13309651 CCAAGCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:13310038 original size:159 final size:158
Alignment explanation
Indices: 13309626--13310040 Score: 399
Period size: 159 Copynumber: 2.6 Consensus size: 158
13309616 TTCGTATGCA
* * * * * *
13309626 TAGACATGGGATGAACTCCGTATGCCCAAGCCAACCCATGAAACGAGTGTGCGGCCGCTCAGCCA
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * *
13309691 ACCAGAGAGGTAGAATGTGCAAGCCGAGGACCGGTCCAGTCCCCCCTACATGCTGCCGATCCTGC
66 ACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGTCCAGTCCCCCCTACATGCTGCCGATCCTGC
*** *
13309756 TGTTGCAACCCTCGATCTGGTCTGATCT
131 TGCCACAACCCTCGATCTGGTCTGAGCT
* * * * * *
13309784 TAGAC-TGGGAATGAACTCTGTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAGTC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * *** **
13309848 GGCCTA-AGAGGCATAATGCACAAGCCAGGGATCGGTCC-GATCCCCCTCTGTGTTTTGCCGATC
65 GACC-AGAGAGGCAGAATGCGCAAGCCGGGGATCGGTCCAG-TCCCCC-CTACATGCTGCCGATC
* * *
13309911 CTGTTGCCACAACCCTTTG-TCTGG-CTGGGGCT
127 CTGCTGCCACAACCC-TCGATCTGGTCT-GAGCT
* * * *
13309943 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAACCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* *
13310008 ACCGGAGAGGCAGAATGCGCAAGTCGGGGATCG
66 ACCAGAGAGGCAGAATGCGCAAGCCGGGGATCG
13310041 ACTCGGTCCC
Statistics
Matches: 201, Mismatches: 48, Indels: 15
0.76 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 86 0.43
159 110 0.55
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
ACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGTCCAGTCCCCCCTACATGCTGCCGATCCTGC
TGCCACAACCCTCGATCTGGTCTGAGCT
Found at i:13311334 original size:158 final size:155
Alignment explanation
Indices: 13310855--13311353 Score: 432
Period size: 158 Copynumber: 3.2 Consensus size: 155
13310845 ACTTCGCACG
* * * * **
13310855 CTTAGACATGCAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTACGGGCGCTCAAC
* * * * * *
13310920 CAGCTGGAGAGGCAGAATGTGTAAGTCGAGGATCAGCTC-AGTCCCCTCCTACGTGCTATCGATC
66 CA-CCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGA-T-CCC-CCTACGTGCT-TCGATC
* * * * **
13310984 CTGCTGCCGCAACCCTCGGTCTGATCAAAT
126 CTACTGCCGCAACCCTCGATCCGGTCTGAT
** * * * * *
13311014 CTTAGACCGGGAATAAACTCCGTATGCATAAGTCAACCCATGAAACGAGAGTACGGGTGCTGAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTACGGGCGCTCAAC
* * * * * *
13311079 CTACCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGATCCGCCTCTGA-GGGCTACCATCC
66 C-ACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGATCC-CC-CT-ACGTGCTTCGATCC
* * **
13311143 CACTGCCACAACCCTCGATCCGG-CTGGGG
127 TACTGCCGCAACCCTCGATCCGGTCT-GAT
* * * * *
13311172 CTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCAGGAAACGGGTGTACGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTACGGGCGCTCAAC
* * *
13311237 CGATCGAAGAGGCAGAATGCACAA-TCTGGGGATCGGCTCGATCTCCCATACGTGCTGTCGATCC
66 C-ACCGAAGAGGCAGAATGCGCAAGTC-GGGGATCGGCTCGATC-CCCCTACGTGCT-TCGATCC
*
13311301 TACTGCTGCAACCCTCGATCCGGTCTGAT
127 TACTGCCGCAACCCTCGATCCGGTCTGAT
13311330 CTTAGAC-TGGGAATGAACTCCGTA
1 CTTAGACAT-GGAATGAACTCCGTA
13311354 CGCTTAGACT
Statistics
Matches: 264, Mismatches: 64, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 9 0.03
158 160 0.61
159 91 0.34
160 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.19
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTACGGGCGCTCAAC
CACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGATCCCCCTACGTGCTTCGATCCTACT
GCCGCAACCCTCGATCCGGTCTGAT
Found at i:13311386 original size:27 final size:26
Alignment explanation
Indices: 13311330--13311379 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13311320 CCGGTCTGAT
13311330 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
*
13311356 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
13311380 TGCCTTAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:13311976 original size:159 final size:158
Alignment explanation
Indices: 13311679--13312054 Score: 450
Period size: 159 Copynumber: 2.4 Consensus size: 158
13311669 CTGTTACTGG
* * *
13311679 TCCTGCTATCGCAACCCTC-TGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
1 TCCTGCTATCGCAACCCTCGTTTCGATTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
13311743 CCAACCCACAAAACGAGCGTGCTGGCGCTTAACCGATCGTAGAGGTAGAATGCATAAGCCGGGGA
65 CCAACCCACAAAACAAGCGTGCGGGCGCTGAACCGACCGTAGAGGCAGAATGCACAAGCCGGGGA
*
13311808 CTGGCTCGATCCCCCCCTGCGCACTGTCGA
130 CTGGCTCGAT-CCCCCCTGCGCACTGCCGA
* * * * *
13311838 TCCTGCTATTGCAACCCTCGTTTCGATTCGATCTTATACTAGGAATGAACTCCATATGCCTAAGT
1 TCCTGCTATCGCAACCCTCGTTTCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
13311903 CAACCCACGAAACAAGCGTGCGGGCGCTGAGCC-AGCCGTAGAGGCATAATGCACAAGTCGGGGA
66 CAACCCACAAAACAAGCGTGCGGGCGCTGAACCGA-CCGTAGAGGCAGAATGCACAAGCCGGGGA
* * * **
13311967 TTGGTTCGATCCCCCTTGCGTGCTGCCGA
130 CTGGCTCGATCCCCCCTGCGCACTGCCGA
* * * * *
13311996 TCCTACTGTCGCAACCCTCGGTCCGATTCAATCTTAGACTGGGAATGAACTCCGTATGC
1 TCCTGCTATCGCAACCCTCGTTTCGATTCGATCTTAGACTGGGAATGAACTCCGTATGC
13312055 TTAGACATGG
Statistics
Matches: 182, Mismatches: 33, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
158 66 0.36
159 110 0.60
160 6 0.03
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.23
Consensus pattern (158 bp):
TCCTGCTATCGCAACCCTCGTTTCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCCACAAAACAAGCGTGCGGGCGCTGAACCGACCGTAGAGGCAGAATGCACAAGCCGGGGAC
TGGCTCGATCCCCCCTGCGCACTGCCGA
Found at i:13312057 original size:26 final size:26
Alignment explanation
Indices: 13312028--13312080 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13312018 CCGATTCAAT
13312028 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
13312054 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
13312080 C
1 C
13312081 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:13312356 original size:343 final size:343
Alignment explanation
Indices: 13311711--13312356 Score: 789
Period size: 343 Copynumber: 1.9 Consensus size: 343
13311701 CCAGTCTGAT
* * *
13311711 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCTGGCGCTTAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAAC
* * * * * * *
13311776 CGATCGTAGAGGTAGAATGCATAAGCCGGGGACTGGCTCGATCCCCCCCTGCGCACTGTCGATCC
66 CAACCGTAGAGGCAGAATGCACAAGCCGGGGACTGACTCGATCCCCCCATGAGCACTGTCGATCC
*** * *
13311841 TGCTATTGCAACCCTCGTTTCGATTCGATCTTATACTAGGAATGAACTCCATATGCCTAAGTCAA
131 TGCTACCACAACCCTCGTTCCGATTCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAA
* * * * *
13311906 CCCACGAAACAAGCGTGCGGGCGCTGAGCCAGCCGTAGAGGCATAATGCACAAGTCGGGGATTGG
196 CCCACGAAACAAGCGTACGGGCACTGAGCCAGCCGTAAAGGCATAATGCACAAGTCAGGGATCGG
** * * * *
13311971 TTCGATCCCCCTTGCGTGCTGCCGATCCTACTGTCGCAACCCTCGGTCCGATTCAATCTTAGACT
261 CCCGATCCCCCTTACGTGCTGCCGATCCCACTGCCACAACCCTCGGTCCGATTCAATCTTAGACT
13312036 GGGAATGAACTCCGTATG
326 GGGAATGAACTCCGTATG
** *
13312054 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAA
* * * * ***
13312118 TCAACCGTAGTGGCAGAATGCACAAGCCGGGGA-TCGACTTGGTCCCCCCATGATTGCTGTCGAT
65 CCAACCGTAGAGGCAGAATGCACAAGCCGGGGACT-GACTCGATCCCCCCATGAGCACTGTCGAT
* *
13312182 CTTGCTACCACAACCCTCAG-TCCGA-TCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
129 CCTGCTACCACAACCCTC-GTTCCGATTC-GATCTTAGACTAGGAATGAACTCCATATGCCTAAG
* * * **
13312245 TCAACCCACGAAACGAGCGTACGGGCACTGAGCCGGTCGTAAAGGCATAATGCGTAAGT-AGGGA
192 TCAACCCACGAAACAAGCGTACGGGCACTGAGCCAGCCGTAAAGGCATAATGCACAAGTCAGGGA
** * *
13312309 TCGGCCCGATCCCCCTCTACGTGCTTTCGGTCCCGCTGCCACAACCCT
257 TCGGCCCGATCCCCCT-TACGTGCTGCCGATCCCACTGCCACAACCCT
13312357 TAGTCCAACT
Statistics
Matches: 251, Mismatches: 47, Indels: 10
0.81 0.15 0.03
Matches are distributed among these distances:
342 20 0.08
343 229 0.91
344 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (343 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAAC
CAACCGTAGAGGCAGAATGCACAAGCCGGGGACTGACTCGATCCCCCCATGAGCACTGTCGATCC
TGCTACCACAACCCTCGTTCCGATTCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAA
CCCACGAAACAAGCGTACGGGCACTGAGCCAGCCGTAAAGGCATAATGCACAAGTCAGGGATCGG
CCCGATCCCCCTTACGTGCTGCCGATCCCACTGCCACAACCCTCGGTCCGATTCAATCTTAGACT
GGGAATGAACTCCGTATG
Found at i:13312735 original size:184 final size:183
Alignment explanation
Indices: 13312370--13312736 Score: 427
Period size: 183 Copynumber: 2.0 Consensus size: 183
13312360 TCCAACTAGG
** * * *
13312370 GCTCAGACATGGAATGAACTCCCTATACCTAAGCCAACCTTCGAAATGGGCTTGCGGGCACTCAG
1 GCTCAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * *
13312435 TTGGTCGAAGAGGCAGAATGCCCAAGCCGGGGATCGACCCGATCCCCCTGCGTGCTGTAGATCCT
66 CTGCTAGAAGAGGCAGAATGCCCAAGCCAGGGATCGACCCGATCCCCCTGCGTGCTGTAGATCCT
** *
13312500 ACTACTGCAACCCTCGATTTGGTCTAAACTTAGACTAGGAATGAACTCCGTAT
131 ACTACTGCAACCCTCGATCCGATCTAAACTTAGACTAGGAATGAACTCCGTAT
* * * * *
13312553 GCTCTGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCTCTCAG
1 GCTCAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
** ** * *
13312618 CTGACTAG-AGAGGCAGAATGCGTAAGCCAGGGA-CTGACTTGATCCACCGTGCGTGCTGTCGAT
66 CTG-CTAGAAGAGGCAGAATGCCCAAGCCAGGGATC-GACCCGATCC-CCCTGCGTGCTGTAGAT
* * *
13312681 CCTGCTA-TCGCAACCCTC-AGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTAT
128 CCTACTACT-GCAACCCTCGA-TCCGATCTAAACTTAGACTAGGAATGAACTCCGTAT
13312737 ACATAAGTCA
Statistics
Matches: 153, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
182 1 0.01
183 89 0.58
184 63 0.41
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (183 bp):
GCTCAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CTGCTAGAAGAGGCAGAATGCCCAAGCCAGGGATCGACCCGATCCCCCTGCGTGCTGTAGATCCT
ACTACTGCAACCCTCGATCCGATCTAAACTTAGACTAGGAATGAACTCCGTAT
Found at i:13312908 original size:159 final size:158
Alignment explanation
Indices: 13312558--13312925 Score: 379
Period size: 159 Copynumber: 2.3 Consensus size: 158
13312548 CGTATGCTCT
* *
13312558 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCTCTCAGCTGAC
1 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCTCTCAGCTGAC
* * * * * *
13312623 TAGAGAGGCAGAATGCGTAAGCCAGGGACTGACTTGATCCACCGTGCGTGCTGTCGATCCTGCTA
66 GAGAGAGGCAGAATGCGCAAGCCAGGGACTGACTCGATCCACCCTACGTGCTGTCGATCCCGCTA
* * * *
13312688 TCGCAACCCTCAGTCCGATCTAATCTTA
131 CCACAACCCTCAGTCCGACCTAAGCTTA
* * * *
13312716 GAC-TGGGAATGAACTCCGTATACATAAGTCAACCCACGAAACGAGCGTGCGAGCGT-TGAGCCT
1 GACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGC-TCTCAG-CT
* * * * *
13312779 GCCGA-AGAGGCATAAT-CTGCAAGCCAGGGA-TCGACTCGGTCCCCCTCTACGTGCTGTCGGTC
63 GACGAGAGAGGCAGAATGC-GCAAGCCAGGGACT-GACTCGATCCACC-CTACGTGCTGTCGATC
* ** **
13312841 CCGCTGCCACAACCCTTGGTCCG-CCTGGGGCTTA
125 CCGCTACCACAACCCTCAGTCCGACCT-AAGCTTA
* *
13312875 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCG
1 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
13312926 GGAGCTCAAC
Statistics
Matches: 171, Mismatches: 31, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
157 3 0.02
158 83 0.49
159 84 0.49
160 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCTCTCAGCTGAC
GAGAGAGGCAGAATGCGCAAGCCAGGGACTGACTCGATCCACCCTACGTGCTGTCGATCCCGCTA
CCACAACCCTCAGTCCGACCTAAGCTTA
Found at i:13313434 original size:159 final size:157
Alignment explanation
Indices: 13313050--13313487 Score: 436
Period size: 159 Copynumber: 2.8 Consensus size: 157
13313040 AACTCCGTAT
* * *
13313050 GCTTAGACATGGAATGAACTCCGTATAACTAAGCCAACCAACGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * *
13313115 CCGGTCGGAGAGGCATAATGCACAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTATCGATCT
66 CCGATCGAAGAGGCATAATGCACAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
* * * *
13313180 GCTGTCGCAACCCTTGGTCTGGTTCGA
131 GCTGCCACAACCCTTGGTCCGGCTCGA
* * ** * * * * * **
13313207 TCTTAGA-TTGGGAATGAACTTTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTGT
1 GCTTAGACAT-GGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
* * * * * *
13313271 GCCGATCGAAGAGGCATAATGCATAAGTCG-GGAATCGGCCCGGTCCCCCTCTGCGTTCTGTCGG
65 GCCGATCGAAGAGGCATAATGCACAAGTCGAGG-ATCGACCCGATCCCCC-CTGCGTGCTATCGA
* *
13313335 TCCCGCTGCCACAACCCTTGGTCCGGCTGGG
128 T-CCGCTGCCACAACCCTTGGTCCGGCTCGA
* * * * *
13313366 GCTTAGACGTGGAAGGAACTCCCTATACCTAAGCCAACCCATGAAACGGGCGT-CTGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGCGTAC-GGGCGCTCA
* * * *
13313430 GCCGA-CCAGAGAGGCAGAATGCACAAGAT-GGGGATCGACCCGATACCCCCTGCGTGCT
65 GCCGATCGA-AGAGGCATAATGCACAAG-TCGAGGATCGACCCGATCCCCCCTGCGTGCT
13313488 GTTGATCCTG
Statistics
Matches: 222, Mismatches: 50, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
156 3 0.01
157 89 0.40
158 23 0.10
159 103 0.46
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
CCGATCGAAGAGGCATAATGCACAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
GCTGCCACAACCCTTGGTCCGGCTCGA
Found at i:13313921 original size:159 final size:158
Alignment explanation
Indices: 13313562--13313998 Score: 504
Period size: 159 Copynumber: 2.8 Consensus size: 158
13313552 AACTCCATAT
* *
13313562 GCTTAGATATGGAATGAACT-CTGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * *
13313626 GCTGGCCTGAGAGGCGGAATGCGCAAGTC-GAGGATC-GACCCAGTCCCCCCTACGTGCTGTCGA
65 GCCGGCCGGAGAGGCAGAATGCGCAAGTCGGA-GATCGGACCGA-TCCCCCCTGCGTGCTATCGA
* ** *
13313689 TCCTGCTGCTGCAACCCTCGATCTGATCTGA
128 TCCCGCTGCCACAACCCTCGATCCGATCTGA
* * * * * * *
13313720 TCTTAGACAGGGAATGAACTCCGTATTCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTGAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * *
13313785 CCGACCGGAGAGGCATAATGCGCAAGTCGGAGATCGGACTGATCCCCCTCTGCGTGCTATCGGTC
66 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGAGATCGGACCGATCCCCC-CTGCGTGCTATCGATC
* *
13313850 CCGCTGCCACAACCCTCGGTCCGA-CTGGG
130 CCGCTGCCACAACCCTCGATCCGATCT-GA
* * *
13313879 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * *
13313944 TCGGTCGGAGAGGCAGAATGTGCAAGTCGGAGATCGGCCCGATCGCCCCTGCGTG
66 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGAGATCGGACCGATCCCCCCTGCGTG
13313999 ATTCCGATCT
Statistics
Matches: 231, Mismatches: 43, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
158 96 0.42
159 135 0.58
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGTCGGAGATCGGACCGATCCCCCCTGCGTGCTATCGATCC
CGCTGCCACAACCCTCGATCCGATCTGA
Found at i:13317027 original size:722 final size:720
Alignment explanation
Indices: 13315638--13317136 Score: 2236
Period size: 722 Copynumber: 2.1 Consensus size: 720
13315628 ATCTGGTTTG
* * *
13315638 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAAGGATGAACT-CGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-ATGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * **
13315702 CCGTAAAATGAGCGTGCGGGTGCTTAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGGG
65 CCATAAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGAA
* * * *
13315767 CGGGTGATAGGTGGGTTCAGGCACATCTTCATATTTCTGCCATACCAATGCCATTTTTATGGCTT
130 CGGGTGACAGGTGGGTTCAAGAACATCTTCATATTTCTGCCATACCAATACCATTTTTATGGCTT
*
13315832 GTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAGGACGACCCGTTTTCT
195 GTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCT
**
13315897 ATTTTTCACGATTTTGGAAACTTTTTGCGGTTCAGAATTTTTTTAAATTTTTCTAGAAAGAGTTT
260 ATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGAATTTTTTTAAATTTTTCTAGAAAGAGTTT
*
13315962 TGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
325 TGTCCCCAAATTTGGTAAAGGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
*
13316027 AAAATCGAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
390 AAAATCAAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
13316092 GGCTACTGGCAGCAAACCTATAAAATCTCAAATACTGCTTAAGGGGTGTGACTTCTCGAGGTTTG
455 GGCTACTGGCAGCAAACCTATAAAATCTCAAATACTGCTTAAGGGGTGTGACTTCTCAAGGTTTG
** * * * *
13316157 ATGAGGGGTAGTGGGCCAATATAAGGGCCACGTACCAGCACCCATTGCACATCATGTGCGCACAC
520 ATGAAAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* ** * *
13316222 CCCCCGACGCCCCCAATCGTCAAAACCCCTAATGCGGTCGGTTCGGCTCTCTGACGATGCTCCGG
585 CCCCCGA-GCCCCCAATCGTCAAAACCCCCAATGCCATCGGTTAGGCTCTCCGACGATGCTCCGG
* * ** * *
13316287 CGATGGTGCCCTGGGCAAAAAAAATGCGGCACCAGCACCTGGCCAAGCCCAGCATGTGCACCATG
649 CGATGCTGCCCCGGGCAAAAAAAACACGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCATG
13316352 GCTCAAA
714 GCTCAAA
*
13316359 ATCTTAGACTGGGAATGAACTCCTTATGCTTAGACATGCAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATG-AATGAACTCCGTATGCCTAAGCCAAC
* ** *
13316424 CCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCTGAGAGGCAGAATGCGCAAGCCGGGGATCGAA
65 CCATAAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGAA
* *
13316489 CGGGTGGCAGGTGGGTTCAAGAACATCTTCATATTTCTGCCATGCCAATACCATTTTTATGGCTT
130 CGGGTGACAGGTGGGTTCAAGAACATCTTCATATTTCTGCCATACCAATACCATTTTTATGGCTT
* *
13316554 GTAAATTCATACAATGGTCTCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTTT
195 GTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCT
* *
13316619 ATTTTTCACGATTTTCAAAACTTTTTGCGGTTCA-AGA-TTTTTTAAATTTTTTTAGAAAGATTT
260 ATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGA-ATTTTTTTAAATTTTTCTAGAAAGAGTT
* *
13316682 TTGTCCCCAAATTTGGTAAAGTTGATCCTTTTATTTTTTTTTGGCATGCACAAAAAAATTCAGCT
324 TTGTCCCCAAATTTGGTAAAGGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCT
* *
13316747 AAAAACTCAAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACCCTTTA
388 AAAAAATCAAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
13316812 ATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCT-CTTGAAGGGGGTGTGAGTTCTCAAGG
453 ATGGCTACTGGCAGCAAACCTATAAAATCTCAAATACTGCTT-AA-GGGGTGTGACTTCTCAAGG
13316876 TTTGATGAAAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
516 TTTGATGAAAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* ***
13316941 ATACCCCCCG-GCCCCTCAATCGTCGGGACCCCCAATGCCATCGGTTAGGCTCTCCGACGATGCT
581 ACACCCCCCGAGCCCC-CAATCGTCAAAACCCCCAATGCCATCGGTTAGGCTCTCCGACGATGCT
* * * * *
13317005 CGGGTGATGCTGCCCCGGGCAAAAAAAACACGGCACCAGCACATGCCCGAGTCTAGCATGTGCAC
645 CCGGCGATGCTGCCCCGGGCAAAAAAAACACGGCACCAGCACATGCCCAAGCCCAGCATGTGCAC
*
13317070 CGTGGCTCAAA
710 CATGGCTCAAA
* * * * *
13317081 ATATTAGATTAGGAATG-ACATCCGTATGCTTAGACATGGAACGAACTCTGTATGCC
1 ATCTTAGACTGGGAATGAAC-TCCGTATGCTTAGACAT-GAATGAACTCCGTATGCC
13317137 AACCAAAGAG
Statistics
Matches: 698, Mismatches: 71, Indels: 17
0.89 0.09 0.02
Matches are distributed among these distances:
720 2 0.00
721 106 0.15
722 504 0.72
723 86 0.12
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (720 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAATGAACTCCGTATGCCTAAGCCAACC
CATAAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGAAC
GGGTGACAGGTGGGTTCAAGAACATCTTCATATTTCTGCCATACCAATACCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTA
TTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGAATTTTTTTAAATTTTTCTAGAAAGAGTTTT
GTCCCCAAATTTGGTAAAGGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
AAATCAAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTATAAAATCTCAAATACTGCTTAAGGGGTGTGACTTCTCAAGGTTTGA
TGAAAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCGAGCCCCCAATCGTCAAAACCCCCAATGCCATCGGTTAGGCTCTCCGACGATGCTCCGGCG
ATGCTGCCCCGGGCAAAAAAAACACGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCATGGC
TCAAA
Found at i:13317582 original size:26 final size:26
Alignment explanation
Indices: 13317546--13317598 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13317536 CCGGTCCGAT
*
13317546 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13317572 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13317598 C
1 C
13317599 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13317954 original size:26 final size:26
Alignment explanation
Indices: 13317925--13317977 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13317915 CCGATCCAAT
13317925 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
13317951 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
13317977 C
1 C
13317978 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:13318232 original size:159 final size:158
Alignment explanation
Indices: 13317951--13318452 Score: 399
Period size: 159 Copynumber: 3.2 Consensus size: 158
13317941 ACTCCGTATG
* * ** * * *
13317951 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCAG-TCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCAAAGCCAAACCACAAAATGAGCGTGCAGGC-GCTCA
* * * * * * * *
13318014 ACCGATCGGAGAGGCAGAATGCGTAAGCCAGGGATCAGCCCGGTTCCCCC-CTGCGTGCTGTCGA
64 GCCGACCGGAGAGGCAGAATACGCAA-CCGGGGATC-GGCCTGATCCCCCTCTGCGTGCTGTCGA
* * *
13318078 TCCTGCTACTATAACCCTCGGTCCGGTCCGAT
127 TCCTGCTACCACAACCCTCGGTCCGGTCAGAT
* * * *
13318110 CTTAGACTGGGAATGAACTTCGTATGCCAAAGTCAAACCATAAAATGAGCGTGCAGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAAACCACAAAATGAGCGTGCAGGCGCTCAGC
* * * *
13318175 CGACCGGAGAGGCATAATACGCAACTCGGGGATCGGACCT-ATCCCCCTCTGCATGCTGCCGGTC
66 CGACCGGAGAGGCAGAATACGCAAC-CGGGGATCGG-CCTGATCCCCCTCTGCGTGCTGTCGATC
* * * * * **
13318239 CGGCTACCACAACCCTTGATTCGG-CTGGGG
129 CTGCTACCACAACCCTCGGTCCGGTC-AGAT
* * * * * * *
13318269 CTTAAACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCAAAGCCAAACCACAAAATGAGCGTGCAGGCGCTCAG
* ** ** * *
13318333 TCGGTCGGAGAGGCAGAATGTGCAACCGGGGATCGGCCTGGA-CCCCCT-TACGTGCTATCGATC
65 CCGACCGGAGAGGCAGAATACGCAACCGGGGATCGGCCT-GATCCCCCTCTGCGTGCTGTCGATC
* * * * *
13318396 TTGCTGCCGCAACCCTCGGTCCGATTAGAT
129 CTGCTACCACAACCCTCGGTCCGGTCAGAT
13318426 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
13318453 TTAGGCTGGG
Statistics
Matches: 266, Mismatches: 66, Indels: 24
0.75 0.19 0.07
Matches are distributed among these distances:
156 1 0.00
157 53 0.20
158 27 0.10
159 184 0.69
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAAACCACAAAATGAGCGTGCAGGCGCTCAGC
CGACCGGAGAGGCAGAATACGCAACCGGGGATCGGCCTGATCCCCCTCTGCGTGCTGTCGATCCT
GCTACCACAACCCTCGGTCCGGTCAGAT
Found at i:13318455 original size:26 final size:26
Alignment explanation
Indices: 13318426--13318478 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13318416 CCGATTAGAT
13318426 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
13318452 CTTAGGCTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13318478 C
1 C
13318479 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13318861 original size:685 final size:684
Alignment explanation
Indices: 13317950--13319455 Score: 1900
Period size: 685 Copynumber: 2.2 Consensus size: 684
13317940 AACTCCGTAT
* * * * *
13317950 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCAGTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTACGGGCACTCAG
* *
13318015 CCGATCGGAGAGGCAGAATGCGTAAGCCAGGGATC-AGCCCGGTTCCCCCCTGCGTGCTGTCGAT
66 CCGATCGGAGAGGCAGAATGCGTAAGCCAGGGATCGA-CCC-GATCCCCCCTACGTGCTGTCGAT
* * * *
13318079 CCTGCTACTATAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCAAAGTC
129 CCTACTGCCATAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCAAAGTC
* * *
13318144 AAACCATAAAATGAGCGTGCAGGCGCTGAGCCGACCGGAGAGGCATAATACGCAA-CTCGGGGAT
194 AAACCATAAAACGAGCGTGCAGGCGCTGAGCCGACCGGAGAGGCATAAGACGCAAGC-CGAGGAT
* * * * *
13318208 CGGACCTATCCCCCTCTGCATGCTGCCGGTCCGGCTACCACAACCCTTGATTCGGCTGGGGCTTA
258 CGGACCGATCCCCCTCTGCATGCTGCCAGTCCGGCTACCACAACCCTAGATCCGACTGGGGCTTA
* * *
13318273 AACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-TGGGCGTGCGGGCGCTCAGTCGG
323 AACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACT-GGCGTGCGGGCGCTCAGCCGA
* * * *
13318337 TCGGAGAGGCAGAATGTGCAA-CCGGGGATCG-GCCTGGACCCCCTTACGTGCTATCGATCTTGC
387 CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCT-GACCCCC-TACGTGCTATCGATCCTGC
* *
13318400 TGCCGCAACCCTCGGTCCGATTAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGGGA
450 TGCCGCAACCCTCGGTCCGATTAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGA
* * * * **
13318465 TGAACTTCGTATGCCTAAGTTAACCCACGAAACGAGTGTGCGGGTGCTCAGTCGGCTGGAGAGGC
515 TGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCTGGAGAGGC
* * * * **
13318530 CAACCAGAGAGGTAGAATGTGCAAGCCGGGGATCAG-CTTGATCCCCCCCTACATGCTGCCGATC
580 CAACCAAAAAGGCAGAATGCGCAAGCCGGGGATCAGCCCAG-TCCCCCCCTACATGCTGCCGATC
* ** *
13318594 -CTGCTGCTGGTCCTGCTA-CCGTAACCCTTGGTCTGG-TCCAA
644 TC-GCTGCCGGTCCTG-TAGCCACAACCCTCGGTCTGGCT-CAA
* ** * * *
13318635 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACTTACGAAATGAACGTGCGAGCACTTA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTACGGGCACTCA
* *
13318699 GCCGGTCGGAGAGGCAGAATGCATAAGCCAGGGATCGACCCGATCCTCCCCT-CTGTGCTGTCGA
65 GCCGATCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCC-CCCCTAC-GTGCTGTCGA
* *
13318763 TCCTACTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
128 TCCTACTGCCATAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCAAAGT
* * * * *
13318828 CAACCCATGAAACGAGCGTGCGGGCGTTGAGCCGACCGGAGAGGCATAAGGCGCAAGCCGAGGAT
193 CAAACCATAAAACGAGCGTGCAGGCGCTGAGCCGACCGGAGAGGCATAAGACGCAAGCCGAGGAT
* * * * * * * * *
13318893 CGGTCGGGTCCCTCTCTGCGTGCTGTCAGTCCTGCTACCATAACCCTAGGTCCGACTGGGGCTTA
258 CGGACCGATCCCCCTCTGCATGCTGCCAGTCCGGCTACCACAACCCTAGATCCGACTGGGGCTTA
*
13318958 AACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACTGGCGTGCGGGCGCTCAGCCGAC
323 AACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACTGGCGTGCGGGCGCTCAGCCGAC
* * * *
13319023 CGGAGTGGCAGAATGCGCAAGCCGGGGATCGACCCTGTCCCCCTGCGTGCTATCGATCCTGCTGT
388 CGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCTGACCCCCTACGTGCTATCGATCCTGCTGC
* * * * *
13319088 TGTAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGGATGA
453 CGCAACCCTCGGTCCGATTAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGA
* * * *
13319153 ACTCCATATGCCTAAGTCAACCCATGAAACTAGCGTGCGGGCACTCAGTTGGCTGGAGAGGCCGA
518 ACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCTGGAGAGGCCAA
* * * * * *
13319218 CTAAAAAGGCATAATGCGCAAGCTGGGGATCAGCCCAGTCCCCCTCTACGTGCTGTCGATCTCGC
583 CCAAAAAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCCCTACATGCTGCCGATCTCGC
***
13319283 TGCCGGTCCTGTAGCCACAACCCTCGGTCTGGCTGGG
648 TGCCGGTCCTGTAGCCACAACCCTCGGTCTGGCTCAA
* * *
13319320 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGACCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTACGGGCACTCAG
* * * * * * * *
13319385 CCGACCTGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCCCCCTACGTGCTGCCGATCT
66 CCGATCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
13319450 TACTGC
131 TACTGC
13319456 TAGTCCTACT
Statistics
Matches: 698, Mismatches: 109, Indels: 29
0.83 0.13 0.03
Matches are distributed among these distances:
684 30 0.04
685 641 0.92
686 24 0.03
687 3 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (684 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTACGGGCACTCAG
CCGATCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
TACTGCCATAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAA
ACCATAAAACGAGCGTGCAGGCGCTGAGCCGACCGGAGAGGCATAAGACGCAAGCCGAGGATCGG
ACCGATCCCCCTCTGCATGCTGCCAGTCCGGCTACCACAACCCTAGATCCGACTGGGGCTTAAAC
ATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACTGGCGTGCGGGCGCTCAGCCGACCGG
AGAGGCAGAATGCGCAAGCCGGGGATCGACCCTGACCCCCTACGTGCTATCGATCCTGCTGCCGC
AACCCTCGGTCCGATTAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACT
CCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCTGGAGAGGCCAACCA
AAAAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCCCTACATGCTGCCGATCTCGCTGC
CGGTCCTGTAGCCACAACCCTCGGTCTGGCTCAA
Found at i:13318886 original size:159 final size:154
Alignment explanation
Indices: 13318604--13319137 Score: 511
Period size: 159 Copynumber: 3.4 Consensus size: 154
13318594 CTGCTGCTGG
* * * *
13318604 TCCTGCTACCGTAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
1 TCCTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
** * * * * * ** **
13318669 CAACTTACGAAATGAACGTGCGAGCACTTAGCCGGTCGGAGAGGCAGAATGCATAAGCCAGGGAT
66 CAACCCATGAAACGAGCGTGCGGGC-GTTAGCCGACCGGAGAGGCAGAATGCGCAAGCC-GGGAT
13318734 CGACCCGATCCTCCCCTCTGTGCTGTCGA
129 CGACCCG-T-C-CCCCTCTGTGCTGTCGA
* *
13318763 TCCTACTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCCTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* *
13318828 CAACCCATGAAACGAGCGTGCGGGCGTTGAGCCGACCGGAGAGGCATAAGGCGCAAGCCGAGGAT
66 CAACCCATGAAACGAGCGTGCGGGCGTT-AGCCGACCGGAGAGGCAGAATGCGCAAGCCG-GGAT
* ** *
13318893 CGGTCGGGTCCCTCTCTGCGTGCTGTC-A
129 C-GACCCGTCCCCCTCT--GTGCTGTCGA
* * * * * ** * *
13318921 GTCCTGCTACCATAACCCTAGGTCC-GACTGGGGCTTAAACAT-GGAATGAACTCCCTATGCCTA
1 -TCCTGCTGCCGTAACCCTCGGTCCGGTC-CGATCTTAGAC-TGGGAATGAACTCCGTATGCCTA
* * *
13318984 AGCCAACCCATAAAACTG-GCGTGCGGGCGCTCAGCCGACCGGAGTGGCAGAATGCGCAAGCCGG
63 AGCCAACCCATGAAAC-GAGCGTGCGGGCG-TTAGCCGACCGGAGAGGCAGAATGCGCAAGCC-G
*
13319048 GGATCGACCCTGTCCCCCTGC-GTGCTATCGA
125 GGATCGACCC-GTCCCCCT-CTGTGCTGTCGA
** * *
13319079 TCCTGCTGTTGTAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCTGTATGC
1 TCCTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
13319138 TTAGACTAGG
Statistics
Matches: 302, Mismatches: 57, Indels: 34
0.77 0.15 0.09
Matches are distributed among these distances:
156 1 0.00
157 55 0.18
158 11 0.04
159 227 0.75
160 8 0.03
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (154 bp):
TCCTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCCATGAAACGAGCGTGCGGGCGTTAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGATCG
ACCCGTCCCCCTCTGTGCTGTCGA
Done.