Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 95 of 402
Found at i:13319162 original size:26 final size:26
Alignment explanation
Indices: 13319111--13319163 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13319101 CCGGTTCGAT
**
13319111 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13319137 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
13319163 C
1 C
13319164 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13319529 original size:26 final size:26
Alignment explanation
Indices: 13319491--13319543 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13319481 CCGGTCTAAT
*
13319491 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13319517 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13319543 C
1 C
13319544 CGAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13320152 original size:184 final size:184
Alignment explanation
Indices: 13319848--13320201 Score: 406
Period size: 184 Copynumber: 1.9 Consensus size: 184
13319838 ACATGGAGTA
* * *
13319848 AACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGACGCACAGCCGGCCGGAGAGGCAG
1 AACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCACAGCCGACCGGAGAGGCAG
* * * * *
13319913 AATGCGTAAGCCGGGGAACGACACGGTCCCCCCTGCGTATTGCCAATCCTGCTGTCGTAACCCTC
66 AATACGTAAGCCGGGGAACGACACGATCCCCCCTACGTACTGCCAATCCTGCTGTCGCAACCCTC
* * *
13319978 -AGCCCAATCCGATTTTAGATTGGGAATGAACTTCGTATGCTTAGACTGAGGATG
131 GA-CCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGGATG
* * * * ** * *
13320032 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTTAGCCGATCGGAGAGGTAG
1 AACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCACAGCCGACCGGAGAGGCAG
* * * * * * * * *
13320097 AATATGTAAGTCGGGG-ACTGGCCCGATCCCCCCTACGTGCTGTCGATCTTGCTGTCGCAACCTT
66 AATACGTAAGCCGGGGAAC-GACACGATCCCCCCTACGTACTGCCAATCCTGCTGTCGCAACCCT
* *
13320161 CGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
130 CGACCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGC
13320202 CTAAGTCAGC
Statistics
Matches: 138, Mismatches: 30, Indels: 4
0.80 0.17 0.02
Matches are distributed among these distances:
183 2 0.01
184 135 0.98
185 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (184 bp):
AACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCACAGCCGACCGGAGAGGCAG
AATACGTAAGCCGGGGAACGACACGATCCCCCCTACGTACTGCCAATCCTGCTGTCGCAACCCTC
GACCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGGATG
Found at i:13320536 original size:168 final size:167
Alignment explanation
Indices: 13320175--13321101 Score: 565
Period size: 159 Copynumber: 5.7 Consensus size: 167
13320165 CCGATCCGAT
* * * *
13320175 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAGCCTACGAAACGAGCGTTCGGGCGCT-AA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * *
13320238 GCCGATCAGAGAGGCATAATGCACAAGCCAGGGATCGATCCGAT-CC-CC-T--TCT-G--CTTG
65 -CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCTCCGTGCTGTCGATCTTG
* * * *
13320295 CTGCCGGTCCTGCTGCCACAACCTTCGA-TCTAGCTGGGG
129 CTGCTGGTCCTACTGCCACAACCCTCGATTC-GGCTGGGG
* * *
13320334 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
*
13320399 C-AGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCTCCAGTGCTGTCGATCTTG
66 CGA-CCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCTCC-GTGCTGTCGATCTTG
13320463 CTGCTGGTCCTACTGCCACAACCCTCGATTCGGCTGGGG
129 CTGCTGGTCCTACTGCCACAACCCTCGATTCGGCTGGGG
* * * * **
13320502 CTTATACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGATGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* ** * * *
13320567 CGACCGGAGAGGCAGAATGTGCAAGCTGGGGATTGACCCGTTCCCTCCCTGCATGCTGTCGATCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCT-CC-G--TGCTGTCGATCT
* * * ** * * **
13320632 TACAGTTGGTCCTACTATCGCAACCCTC-AGTTCGATCT-GAT
127 TGCTGCTGGTCCTACTGCCACAACCCTCGA-TTCG-GCTGGGG
** * * * * *
13320673 CTTAGAC-TGGGAATGAACTTTGTATGCCTAAGCCAATCCATGAAATGAGCGTGCGGGCACTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * * *
13320737 CCGGCCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACTCGGTCCC-CC--CCT-TC---CGTGC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCTCCGTGCTGTCGATCTTGC
* * * * * * ****
13320795 TG-TCGATCCTGCTG-CAGTAACCCTCG-GTCCGATCCAAT
130 TGCT-GGTCCTACTGCCA-CAACCCTCGATTCGGCT-GGGG
* * * * * * * * * * *
13320833 TTTAAAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAACGTACGGGGGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * *
13320897 CCGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCC-CC-T-CTG-CG----TGC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCTCCGTGCTGTCGATCTTGC
* * * * * * * * *
13320954 TG-TCAGTCCCACTACCATAACCCTAGGTCCGACTGGGT
130 TGCT-GGTCCTACTGCCACAACCCTCGATTCGGCTGGGG
* * * ** * * *
13320992 CTTAGACATGGAATGAACTCCCTATACCTAAGCTAACCCATAAAACGGGTGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * *
13321057 CGACCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCC
13321102 CCTTGCGTGC
Statistics
Matches: 609, Mismatches: 128, Indels: 62
0.76 0.16 0.08
Matches are distributed among these distances:
158 2 0.00
159 202 0.33
160 125 0.21
161 2 0.00
163 3 0.00
164 2 0.00
165 2 0.00
166 1 0.00
168 130 0.21
169 8 0.01
170 2 0.00
171 128 0.21
172 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (167 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCTCCGTGCTGTCGATCTTGCT
GCTGGTCCTACTGCCACAACCCTCGATTCGGCTGGGG
Found at i:13320701 original size:171 final size:168
Alignment explanation
Indices: 13320175--13320774 Score: 514
Period size: 168 Copynumber: 3.6 Consensus size: 168
13320165 CCGATCCGAT
* * * * * *
13320175 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAGCCTACGAAACGAGCGTTCGGGCGCT-AA
1 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * * * *
13320238 GCCGATCAGAGAGGCATAATGCACAAGCCAGGGATCGATCCGATCCCCTTC--TGCT-T-G---C
65 -CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGAT-CCCTCCAGTGCTGTCGATCC
* * * * * *
13320296 T---GCCGGTCCTGCTGCCACAACCTTCGA-TCTAGCTGGGG
128 TACAGCTGGTCCTACTACCACAACCCTCGATTC-GGCTGGAG
** * * *
13320334 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * *
13320399 C-AGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCTCCAGTGCTGTCGATCTTG
66 CGA-CCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCTCCAGTGCTGTCGATCCTA
* * *
13320463 CTGCTGGTCCTACTGCCACAACCCTCGATTCGGCTGGGG
130 CAGCTGGTCCTACTACCACAACCCTCGATTCGGCTGGAG
* * **
13320502 CTTATACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGATGCTCAAC
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* ** * * *
13320567 CGACCGGAGAGGCAGAATGTGCAAGCTGGGGATTGACCCGTTCCCTCCCTGCATGCTGTCGATCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCT-CCAG--TGCTGTCGATCC
* * * * *
13320632 TACAGTTGGTCCTACTATCGCAACCCTC-AGTTCGATCT-GAT
128 TACAGCTGGTCCTACTACCACAACCCTCGA-TTCG-GCTGGAG
* * * * *
13320673 CTTAGAC-TGGGAATGAACTTTGTATGCCTAAGCCAATCCATGAAATGAGCGTGCGGGCACTCAG
1 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * *
13320737 CCGGCCGAAGAGGCAGAATGCGTAAGCCAGGGATCGAC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGAC
13320775 TCGGTCCCCC
Statistics
Matches: 362, Mismatches: 58, Indels: 30
0.80 0.13 0.07
Matches are distributed among these distances:
158 6 0.02
159 90 0.25
160 7 0.02
161 1 0.00
162 1 0.00
165 1 0.00
168 124 0.34
169 6 0.02
170 2 0.01
171 122 0.34
172 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (168 bp):
CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCTCCAGTGCTGTCGATCCTAC
AGCTGGTCCTACTACCACAACCCTCGATTCGGCTGGAG
Found at i:13321712 original size:26 final size:26
Alignment explanation
Indices: 13321674--13321726 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13321664 GGCTCAACCT
13321674 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
13321700 CTTAGAC-ATGGAATTAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
13321726 C
1 C
13321727 CTAAGCCAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13321898 original size:26 final size:26
Alignment explanation
Indices: 13321869--13321947 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
13321859 CCGGTCCAAT
*
13321869 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGGATGAACTCCGTATG
* *
13321895 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGAATGGGGATGAACTCCGTATG
*
13321921 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGAATGGGGATGAACTCCGTATG
13321947 C
1 C
13321948 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGAATGGGGATGAACTCCGTATG
Found at i:13322786 original size:26 final size:26
Alignment explanation
Indices: 13322748--13322800 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13322738 CCGATCTGAT
* *
13322748 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
13322774 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
13322800 C
1 C
13322801 CTAAGAGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:13323479 original size:26 final size:26
Alignment explanation
Indices: 13323442--13323493 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13323432 CAGTCTGATT
13323442 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* *
13323468 TTAGACAT-GGAATGTACTCGGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
13323494 CTAAGCTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:13324221 original size:158 final size:157
Alignment explanation
Indices: 13323919--13324453 Score: 540
Period size: 158 Copynumber: 3.4 Consensus size: 157
13323909 TCCTGCTACT
* * * **
13323919 GGTCCTGCTACTGTAACCCTCGGT-TCGGTCTAATCTTAGACTGGGAATGAACTCCGCATGCCTA
1 GGTCCTGCTACCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTA
* * * * * *
13323983 AGCCAACCCACGAAACGAGCGTACGGGTGCTCAGTTGACCAAAGAGGCAGAATGCGTAAGCCGGG
65 AGCCAACCCACGAAACGAGCGTACGGGTGCTCAGCTGA-CGAAGAGGCAAAATGCGCAAGTCGAG
* * * *
13324048 GACCGGCCCGATCCCCCTTGCGTGCTGTC
129 GATCGACCCGGTCCCCCTTGTGTGCTGTC
* * *
13324077 GGTCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATAAACTCTATATGCCTAA
1 GGTCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAA
* * * * * * * *
13324142 GTCAACCCACGAAACGAGCGTTCGAGCGCTGAGCTGGCGAGAGAGGCATAATACGCAAGTCGAGG
66 GCCAACCCACGAAACGAGCGTACGGGTGCTCAGCTGACGA-AGAGGCAAAATGCGCAAGTCGAGG
*
13324207 ATCGACCCGGTCCCCCTCTGTATGCTGTC
130 ATCGACCCGGTCCCCCT-TGTGTGCTGTC
* * * * * ** *
13324236 GGTCCTGTTGCCACAACCCTCGATCT-GACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCT
1 GGTCCTGCTACCGCAACCCTCGGTCTGGTCT-GATCTTAGAC-TGGGAATGAACTCCATATGCCT
* * * * * * *
13324299 AAGCCAACCCATGAAACGGGCGTGCGGGTACTCAGCCAGTCGAAGAGGCAAAATGCACAAGTCGA
64 AAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG-CTGACGAAGAGGCAAAATGCGCAAGTCGA
13324364 -GATCGACCCGGTCCCCCTTGTGTGCTG-C
128 GGATCGACCCGGTCCCCCTTGTGTGCTGTC
* * * * *
13324392 TGATCCTACTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATTAACTCCATATGC
1 -GGTCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGC
13324454 TTAGACTGGG
Statistics
Matches: 306, Mismatches: 62, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
156 2 0.01
157 53 0.17
158 141 0.46
159 104 0.34
160 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (157 bp):
GGTCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAA
GCCAACCCACGAAACGAGCGTACGGGTGCTCAGCTGACGAAGAGGCAAAATGCGCAAGTCGAGGA
TCGACCCGGTCCCCCTTGTGTGCTGTC
Found at i:13324463 original size:26 final size:26
Alignment explanation
Indices: 13324427--13324479 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13324417 CCGGTCCGAT
*
13324427 CTTAGACTGGGAATTAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13324453 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13324479 C
1 C
13324480 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13325372 original size:26 final size:26
Alignment explanation
Indices: 13325334--13325386 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13325324 GGCTCAACCT
13325334 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13325360 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
13325386 C
1 C
13325387 CTAAGCCAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13325565 original size:26 final size:26
Alignment explanation
Indices: 13325529--13325607 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
13325519 TCGGTCCGAT
* *
13325529 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
*
13325555 CTTATACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
* *
13325581 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
13325607 C
1 C
13325608 GTAAGTCAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCTGTATG
Found at i:13325950 original size:170 final size:171
Alignment explanation
Indices: 13325580--13326019 Score: 453
Period size: 170 Copynumber: 2.6 Consensus size: 171
13325570 AACTCTGTAT
* * * * *
13325580 GCTTAGACTGGGGATAAACTCCGTATGCGTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* * * * * * * ****
13325645 CCAGTCGGAGAAGCATAATGCACAAGCTGGGGATCAACCCGATCCCCCTCTGCGTGCTGTTGATC
66 CCAGCCGAAGAGGTAGAATGCACAAGCCGGGGATCAACCCGAGCCCCCTCTGCGTGCTACCAATC
* * * *
13325710 CCACTACCGGTCTTGCTACCACAACCCTCGGTTCGACTGGG
131 CCACTACCGATCCTGCTACCACAACCCTCAGTTCGACTGGA
* *
13325751 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCCCGAAACAAGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCA
* **
13325815 GCCGGCCGAAGAGGTAGAATGCACAAGCCGGGGATCGGCCCGAGCCCCC-CTGCGTGCTACCAAT
65 GCCAGCCGAAGAGGTAGAATGCACAAGCCGGGGATCAACCCGAGCCCCCTCTGCGTGCTACCAAT
** *
13325879 CCTGCTGCTC-ATCCTGCTACCACAACCCTCAG-TCTGATCT-GA
130 CCCACTAC-CGATCCTGCTACCACAACCCTCAGTTC-GA-CTGGA
* * * * *
13325921 TCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCAC-AGAACGAGCATGCGGGCACTCA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGA-AACAAGCGTGCGGGCGCTCA
* * *
13325985 GCTAGCCGGAA-AGGTAGAATGCGCAAGTCGGGGAT
65 GCCAGCC-GAAGAGGTAGAATGCACAAGCCGGGGAT
13326020 TGACTCGATC
Statistics
Matches: 223, Mismatches: 39, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
169 4 0.02
170 118 0.53
171 100 0.45
172 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
CCAGCCGAAGAGGTAGAATGCACAAGCCGGGGATCAACCCGAGCCCCCTCTGCGTGCTACCAATC
CCACTACCGATCCTGCTACCACAACCCTCAGTTCGACTGGA
Found at i:13326448 original size:26 final size:26
Alignment explanation
Indices: 13326410--13326462 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13326400 CCGATCCGAT
* *
13326410 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
13326436 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
13326462 C
1 C
13326463 CTAAGAGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:13327138 original size:26 final size:26
Alignment explanation
Indices: 13327100--13327152 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13327090 TCGGTCTGAT
13327100 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
13327126 CTTAGACAT-GGAATGTACTCGGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13327152 C
1 C
13327153 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13327861 original size:158 final size:157
Alignment explanation
Indices: 13327577--13327976 Score: 362
Period size: 159 Copynumber: 2.5 Consensus size: 157
13327567 GATCCTGCTA
* * **
13327577 CGGTCCTGCTGCTGTAACCCTCGGTCCGGTCTGATCTTAGACTGGG---AACTCTGCATGCCTAA
1 CGGTCCTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATAACTCTATATGCCTAA
* * * * * *
13327639 GCCAACCCACGAAACAAGCGTACGGGTGCCCAGTTGACCAAAGAGGCAGAATGCGTAAGCCGGGG
66 GCCAACCCACGAAACGAGCGTACGAGCGCCCAGCTGACCAAAGAGGCAGAATACGCAAGCCGGGG
*
13327704 ACCGGCCCGATCCCTCCTAC-G-TGCTGT
131 ACCGACCCGATCCC-CCT-CTGATGCTGT
*
13327731 CGGTCCTGCTGCCGTAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATAAACTCTATATGCCTA
1 CGGTCCTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAT-AACTCTATATGCCTA
* * *** *** * * *
13327796 AGTCAACCCACGAAACGAGCGTTCGAGCGTTGAGCTGGTGAGAGAGGCATAATACGCAAGTCGGG
65 AGCCAACCCACGAAACGAGCGTACGAGCGCCCAGCTGACCAAAGAGGCAGAATACGCAAGCCGGG
* * *
13327861 GATCGACCCGGTCCCCCTCTGTATGTTGT
130 GACCGACCCGATCCCCCTCTG-ATGCTGT
* ** ** * ** **
13327890 CGGTCCTGTTGCCACAACCCTCGGTCTGACCGGGGCTTAGACAT-GGAATTAACTCCCTATGCCT
1 CGGTCCTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGAC-TGGGAA-TAACTCTATATGCCT
* *
13327954 AAGCCAACCCATGAAACGGGCGT
64 AAGCCAACCCACGAAACGAGCGT
13327977 GCGGGCACTC
Statistics
Matches: 197, Mismatches: 40, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
154 43 0.22
156 1 0.01
157 4 0.02
158 73 0.37
159 74 0.38
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CGGTCCTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATAACTCTATATGCCTAA
GCCAACCCACGAAACGAGCGTACGAGCGCCCAGCTGACCAAAGAGGCAGAATACGCAAGCCGGGG
ACCGACCCGATCCCCCTCTGATGCTGT
Found at i:13328118 original size:26 final size:26
Alignment explanation
Indices: 13328082--13328134 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13328072 CCGGTTCGAT
*
13328082 CTTAGACTAGGAATTAACTCAATATG
1 CTTAGACTAGGAATGAACTCAATATG
* *
13328108 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCAATATG
13328134 C
1 C
13328135 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCAATATG
Found at i:13328269 original size:184 final size:182
Alignment explanation
Indices: 13327940--13328380 Score: 508
Period size: 184 Copynumber: 2.4 Consensus size: 182
13327930 ACATGGAATT
* * * *
13327940 AACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGCC-AGTCGGAGAGGCA
1 AACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGC-GGCACTCAGCCGA-CCGGAGAGGCA
* * *
13328004 AAATGCACAAGCCGAGATCGACCCGGTCCCCCTTGTGTGCTACTGATCCTACTACCGCAACCCTC
64 GAATGCGCAAGCCGAGATCGACCCGATCCCCCTTGTGTGCTACTGATCCTACTACCGCAACCCTC
* * *
13328069 GGTCCGGTTCGATCTTAGACTAGGAATTAACTCAATATGCTTAGACTAGGGATG
129 GGTCCGATCCGATCTTAGACTAGGAATGAACTCAATATGCTTAGACTAGGGATG
* * * *
13328123 AACTCCATATGCCTATGTCAACCCATGAAACGAGCGTACGAGCGCTCAACCGACCGGAGAGGCAG
1 AACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCG-GCACTCAGCCGACCGGAGAGGCAG
* * * * * * ** *
13328188 AATGCGCAAGCTTGGGATCGATCTGATCTCCCTTGTGTGCT-GTCGATCCTACTGTCGTAACCCT
65 AATGCGCAAGC-CGAGATCGACCCGATCCCCCTTGTGTGCTACT-GATCCTACTACCGCAACCCT
* * * * *
13328252 CGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGGTG
128 CGGTCCGATCCGATCTTAGACTAGGAATGAACTCAATATGCTTAGACTAGGGATG
* * * *
13328307 AACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACACTCAGCCGACCAGAGAGGCAG
1 AACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGG-CACTCAGCCGACCGGAGAGGCAG
* *
13328372 GATGTGCAA
65 AATGCGCAA
13328381 ATCGAGAATC
Statistics
Matches: 215, Mismatches: 38, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
182 1 0.00
183 64 0.30
184 150 0.70
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (182 bp):
AACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGCACTCAGCCGACCGGAGAGGCAGA
ATGCGCAAGCCGAGATCGACCCGATCCCCCTTGTGTGCTACTGATCCTACTACCGCAACCCTCGG
TCCGATCCGATCTTAGACTAGGAATGAACTCAATATGCTTAGACTAGGGATG
Found at i:13329026 original size:26 final size:26
Alignment explanation
Indices: 13328988--13329038 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13328978 GGCTCAAACT
13328988 CTTAGACTAGGAATGAACTCCGTATA
1 CTTAGACTAGGAATGAACTCCGTATA
*
13329014 CTTAGAC-ATGGAATGAACTCTGTAT
1 CTTAGACTA-GGAATGAACTCCGTAT
13329039 GACTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATA
Found at i:13329375 original size:26 final size:26
Alignment explanation
Indices: 13329331--13329383 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13329321 CCAGTTTGAT
*
13329331 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
13329357 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
13329383 C
1 C
13329384 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:13329569 original size:26 final size:26
Alignment explanation
Indices: 13329540--13329591 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13329530 TGGTTTGATT
*
13329540 TTAGAC-TGGGAATGAACTCTGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
13329566 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
13329592 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:13329916 original size:159 final size:153
Alignment explanation
Indices: 13329564--13329999 Score: 407
Period size: 153 Copynumber: 2.8 Consensus size: 153
13329554 AACTCTGTAT
*
13329564 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGAGAGCGCTCAG
* * * * * * *
13329629 CCGGTCGGAGAGGTAGAATGCGTAAGCCGAGGATCGGCCTGGTCCCCCCTGCATTCTGTCAATCC
66 CAGGTCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGATCCCCCCTGCATGCTGTCAATCC
* ** *
13329694 TGTTGCTGCAATCCTCGGTCTGA
131 CGTTGCCACAACCCTCGGTCTGA
* * * * * *
13329717 TCTTAAAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATC-AGTGTTTAGA-CGCT
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-CGAGCG-TGAGAGCGCT
* * *
13329779 GAGCAGGTCGGAGAGGCATAATACGCAAGCC-AGTGATCGGCCCGATCCCCATCTGCATGCTGTC
63 CAGCAGGTCGGAGAGGCAGAATACGCAAGCCGAG-GATCGGCCCGATCCCC-CCTGCATGCTGTC
*
13329843 AGTCCCGTTGCCACAACCCTCGGTCTGGCTA
126 AATCCCGTTGCCACAACCCTCGGTCT-G--A
* * * *
13329874 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGTGTGCGGGCGCT
1 --GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGAGAGCGCT
* * * * * * * * *
13329938 CAACCA-GCCGGAGTGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGT
63 C-AGCAGGTCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGATCCCCCCTGCATGCTGT
13330000 TGATCTAGCT
Statistics
Matches: 226, Mismatches: 42, Indels: 25
0.77 0.14 0.09
Matches are distributed among these distances:
152 3 0.01
153 86 0.38
154 36 0.16
155 1 0.00
157 1 0.00
158 14 0.06
159 80 0.35
160 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (153 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGAGAGCGCTCAG
CAGGTCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGATCCCCCCTGCATGCTGTCAATCC
CGTTGCCACAACCCTCGGTCTGA
Found at i:13330079 original size:26 final size:26
Alignment explanation
Indices: 13330035--13330087 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13330025 CCGGTCTGAT
13330035 CTTAGACTGGGAATAAACT-TCGTATG
1 CTTAGACTGGGAATAAACTCT-GTATG
* *
13330061 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
13330087 C
1 C
13330088 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:13330591 original size:26 final size:26
Alignment explanation
Indices: 13330562--13330614 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13330552 CCGATCTGAT
13330562 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
13330588 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13330614 C
1 C
13330615 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13331148 original size:26 final size:26
Alignment explanation
Indices: 13331112--13331164 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13331102 CCGGTCCGAT
13331112 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
* *
13331138 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
13331164 C
1 C
13331165 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:13331491 original size:26 final size:26
Alignment explanation
Indices: 13331455--13331507 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13331445 CCGGTTTGAT
* * *
13331455 CTTAGACTGGGAATGAAGTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
13331481 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
13331507 C
1 C
13331508 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:13331703 original size:26 final size:26
Alignment explanation
Indices: 13331664--13331716 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13331654 CCAGTTCAAT
13331664 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
13331690 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
13331716 C
1 C
13331717 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:13332192 original size:26 final size:26
Alignment explanation
Indices: 13332163--13332215 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13332153 CCGATCCGAT
*
13332163 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
* *
13332189 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
13332215 C
1 C
13332216 CCAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATAGGAATGAACTCCGTATG
Found at i:13332814 original size:11 final size:11
Alignment explanation
Indices: 13332800--13332826 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
13332790 GGCTCTCCAG
13332800 CGATGCTCCGA
1 CGATGCTCCGA
13332811 CGATGCTCCGA
1 CGATGCTCCGA
13332822 CGATG
1 CGATG
13332827 GTGTCCCGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.19
Consensus pattern (11 bp):
CGATGCTCCGA
Found at i:13332925 original size:26 final size:26
Alignment explanation
Indices: 13332896--13332948 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13332886 GGCTCAAACT
13332896 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
13332922 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
13332948 C
1 C
13332949 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:13333577 original size:26 final size:26
Alignment explanation
Indices: 13333539--13333591 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13333529 CTGATCCGAT
13333539 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
13333565 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
13333591 C
1 C
13333592 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:13334118 original size:125 final size:125
Alignment explanation
Indices: 13333889--13334120 Score: 288
Period size: 125 Copynumber: 1.9 Consensus size: 125
13333879 TATAACCTAG
* * * *
13333889 AAAGGATTTTGAAGCTCAAAATATCATACTTTGTATTTGAACAATTCTAGTCATAAAAAACATTC
1 AAAGGATTTTGAAGCTCAAAAAATCAGACTTTGTATTTGAACAATTATAGGCATAAAAAACATTC
* * ** *
13333954 GAACAATTTTCGCGTGATTCTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGTAAGTTAT
66 GAACAATTATCGCATGATTCTAATTTTTTACTGTGTTTCATAGTGTCAAGTGTAAGTTAT
* * * **
13334014 AAAGGATTTT-ACAGTTTAAAAAATCAGACTTTAGT-TTTGAACAATTATGGGCATAAAACTCAT
1 AAAGGATTTTGA-AGCTCAAAAAATCAGACTTT-GTATTTGAACAATTATAGGCATAAAAAACAT
* *
13334077 TCGCACAATTATCGCATGATTTTAATTTTTTACTGTGTTTCATA
64 TCGAACAATTATCGCATGATTCTAATTTTTTACTGTGTTTCATA
13334121 CTTATTGGCT
Statistics
Matches: 89, Mismatches: 16, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
124 1 0.01
125 86 0.97
126 2 0.02
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.40
Consensus pattern (125 bp):
AAAGGATTTTGAAGCTCAAAAAATCAGACTTTGTATTTGAACAATTATAGGCATAAAAAACATTC
GAACAATTATCGCATGATTCTAATTTTTTACTGTGTTTCATAGTGTCAAGTGTAAGTTAT
Found at i:13335866 original size:125 final size:124
Alignment explanation
Indices: 13335677--13335907 Score: 338
Period size: 125 Copynumber: 1.9 Consensus size: 124
13335667 CGTAACCTAG
*
13335677 AAAGGATTTTGAAGCTTAAAATATCAGACTTTGTTTCGAACAATTCTGGGCATAAAAAACATTCG
1 AAAGGATTTTGAAGCTTAAAACATCAGACTTTGTTTCGAACAATTCTGGGCATAAAAAACATTCG
* ** * * *
13335742 AACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGTAAGTTAT
66 AACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATAGTGTCAAGTGTAAGTTAT
* * *
13335801 AAAGGATTTTGAAGTTTAAAACATCAGACTTTGGTTTTGAACAATTCTGGGCAT-AAAACCTATT
1 AAAGGATTTTGAAGCTTAAAACATCAGACTTT-GTTTCGAACAATTCTGGGCATAAAAAAC-ATT
*
13335865 CGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATA
64 CGAACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATA
13335908 CTTATTGGCT
Statistics
Matches: 94, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
124 35 0.37
125 59 0.63
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.39
Consensus pattern (124 bp):
AAAGGATTTTGAAGCTTAAAACATCAGACTTTGTTTCGAACAATTCTGGGCATAAAAAACATTCG
AACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATAGTGTCAAGTGTAAGTTAT
Found at i:13338273 original size:126 final size:125
Alignment explanation
Indices: 13338043--13338275 Score: 299
Period size: 126 Copynumber: 1.9 Consensus size: 125
13338033 CGTAACCTAG
* * * *
13338043 AAAGGATTTTGAAGCTCAAAATATCTGACTTTGTATTCGAACAATTCTGGGCATAAAAAATATTC
1 AAAGGATTTTGAAGCTAAAAACATCAGACTTTGTATTCGAACAATTCAGGGCATAAAAAATATTC
* ** * *
13338108 GAACAATTTTCGCGTGATTTTAATTTTTTGTTCTTTTTCATAGTGTCAAGTGTTAGTTAT
66 GAACAATTATCGCACGATTTTAATTTTTTGTCCTGTTTCATAGTGTCAAGTGTTAGTTAT
* * **
13338168 AAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGT-TTTGAACAATTCAGGGCATAAAACCTAT
1 AAAGGATTTTGAAG-CTAAAAACATCAGACTTT-GTATTCGAACAATTCAGGGCATAAAAAATAT
*
13338232 TCGCACAATTATCGCACGATTTTAATTTTTTG-CCGTGTTTCATA
64 TCGAACAATTATCGCACGATTTTAATTTTTTGTCC-TGTTTCATA
13338276 CTTATTGGCT
Statistics
Matches: 91, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
125 15 0.16
126 74 0.81
127 2 0.02
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (125 bp):
AAAGGATTTTGAAGCTAAAAACATCAGACTTTGTATTCGAACAATTCAGGGCATAAAAAATATTC
GAACAATTATCGCACGATTTTAATTTTTTGTCCTGTTTCATAGTGTCAAGTGTTAGTTAT
Found at i:13338485 original size:596 final size:597
Alignment explanation
Indices: 13333812--13343660 Score: 17272
Period size: 597 Copynumber: 16.5 Consensus size: 597
13333802 TAAAACAAAA
13333812 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTTTA
1 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTTTA
** * * * *
13333877 AGTATAACCTAGAAAGGATTTTGAAGCTCAAAATATCATACTTTGTATTTGAACAATTCTAGTCA
66 AGCGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCAGACTTTGTATTCGAACAATTCTGGGCA
*
13333942 TAAAAAACATTCGAACAATTTTCGCGTGATTCTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
131 TAAAAAACATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
* *
13334007 AAGTTATAAAGGATTTT-ACAGTTTAAAAA-ATCAGACTTTAGTTTTGAACAATTATGGGCATAA
196 AAGTTATAAAGGATTTTGA-AGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAA
* **
13334070 AA-CTCATTCGCACAATTATCGCATGATTTTAATTTTTTACTGTGTTTCATACTTATTGGCTTTT
260 AACCT-ATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTT
* * *
13334134 AGATATATTTTTAGGTGCTCTAAGTAACTTGTGAGCTTACATTTGAATGATCTTGATATTTGGAT
324 AGATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGAT
* *
13334199 ATTATTTGTGAAGTTGTTATTCGCGCTTGAAGTGATTAGCTGTCTGCTAACTTGTTTTAGCAGTT
389 ATTATTTGTGAAGTTGTTATTGGCGCTTGATGTGATTAGCTGTCTGCTAACTTGTTTTAGCAGTT
*
13334264 TATAGAATGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTC
454 TATAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTC
* * *
13334329 TCAATAGTCCAGCTTTAAAATATGAAAGAATTGTTTTAGAAGG-TTTTAAATGAAAATGAATTTT
519 TCTATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGAAAATGAATTTG
13334393 AATATATTGAATCG
584 AATATATTGAATCG
* *
13334407 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTCAA-TTTTACACAGTTTTA
1 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTTTA
* * * *
13334471 AGCGTAACCTAGAAAGGATCTTGAAGCTCAAAATATTAGACTTTTTACTCGAACAATTCTGGGCA
66 AGCGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCAGACTTTGTATTCGAACAATTCTGGGCA
* *
13334536 AAAAAAACATTCGAACAATTTTCGAGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
131 TAAAAAACATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
*
13334601 AAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTATGGGCATAAA
196 AAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAAA
13334666 ACCTATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTAG
261 ACCTATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTAG
*
13334731 ATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGCATAT
326 ATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATAT
13334796 TATTTGTGAAGTTGTTATTGGCGCTTGATGTGATTAGCTGTCTGCTAACTTGTTTTAGCAGTTTA
391 TATTTGTGAAGTTGTTATTGGCGCTTGATGTGATTAGCTGTCTGCTAACTTGTTTTAGCAGTTTA
*
13334861 TAGAAGGAGCACTAAAAGCCTAATGCTTTTAAAATTTTATGTTTTTCTTCGAATATGATTTTCTC
456 TAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCTC
*
13334926 TATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATTAAAATGAATTTGAA
521 TATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGAAAATGAATTTGAA
*
13334991 TGTATTGAATCG
586 TATATTGAATCG
*
13335003 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTCTA
1 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTTTA
**
13335068 AGCGTAACCTAGAAATAATTTTGAAGCTCAAAATATCAGACTTTGTATTCGAACAATTCTGGGCA
66 AGCGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCAGACTTTGTATTCGAACAATTCTGGGCA
*
13335133 TAAAAAATATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
131 TAAAAAACATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
* *
13335198 AAGTTATAAAGGATTTTAAAGTTTAAAAACATCAGACTTTGGTTTTTAACAATTCTGGGCATAAA
196 AAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAAA
**
13335263 ACCTATTCGCACAATTATCGCACGATTTTAATTTTTTACTGTGTTTCATACTTATTGGCTTTTAG
261 ACCTATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTAG
13335328 ATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATAT
326 ATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATAT
*
13335393 TATTTGTGAAGTTGTTATTGGCGCTTGATGTGATTAGCTGTCTGCTAACGTGTTTTAGCAGTTTA
391 TATTTGTGAAGTTGTTATTGGCGCTTGATGTGATTAGCTGTCTGCTAACTTGTTTTAGCAGTTTA
**
13335458 TAGAAAAAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCTC
456 TAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCTC
* *
13335523 TATAGTCCAATTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATTAAAATGAATTTGAA
521 TATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGAAAATGAATTTGAA
*
13335588 TGTATTGAATCG
586 TATATTGAATCG
* * * * *
13335600 AATGTTTTAAACCTACTCAAACAATGAAACAAATAGCATTGGCTTTTAATTTTTCCGCAATTCTA
1 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTTTA
*
13335665 AGCGTAACCTAGAAAGGATTTTGAAGCTTAAAATATCAGACTTTGT-TTCGAACAATTCTGGGCA
66 AGCGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCAGACTTTGTATTCGAACAATTCTGGGCA
13335729 TAAAAAACATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
131 TAAAAAACATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
13335794 AAGTTATAAAGGATTTTGAAGTTT-AAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAAA
196 AAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAAA
13335858 ACCTATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTAG
261 ACCTATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTAG
13335923 ATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATAT
326 ATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATAT
*
13335988 TATTTGTGAAGTTGTTATTGGTGCTTGATGTGATTA--TGTCTGCTAACTTGTTTTAGCAGTTTA
391 TATTTGTGAAGTTGTTATTGGCGCTTGATGTGATTAGCTGTCTGCTAACTTGTTTTAGCAGTTTA
13336051 TAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCTC
456 TAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCTC
13336116 TATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATG-AAATGAATTTGAA
521 TATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGAAAATGAATTTGAA
13336180 TATATTGAATCG
586 TATATTGAATCG
*
13336192 AATATTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTTTA
1 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTTTA
*
13336257 AGTGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCAGACTTTGTATTCGAACAATTCTGGGCA
66 AGCGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCAGACTTTGTATTCGAACAATTCTGGGCA
*
13336322 TAAAAAATATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
131 TAAAAAACATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
13336387 AAGTTATAAAGGATTTTGAAGTTT-AAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAAA
196 AAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAAA
13336451 ACC-ATTCGCACAATTATCGCACGATTTTAATTTTT--CTGTGTTTCATACTTATTGGCTTTTAG
261 ACCTATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTAG
13336513 ATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATAT
326 ATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATAT
*
13336578 TATTTGTGAAGTTGTTATTGTGC-CTTGAAGTGATTAGCTGTCTGCTAACTTGTTTTAGCAGTTT
391 TATTTGTGAAGTTGTTATTG-GCGCTTGATGTGATTAGCTGTCTGCTAACTTGTTTTAGCAGTTT
13336642 ATAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCT
455 ATAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCT
*
13336707 CTATAGTCCAGCTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATG-AAATGAATTTGA
520 CTATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGAAAATGAATTTGA
13336771 ATATATTGAATCG
585 ATATATTGAATCG
13336784 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGG-TTTTAATTTTTCCACAGTTTTA
1 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTTTA
* *
13336848 AGCGTAACCTAGAAAGGA-TTTGAAGCTCAAAATATTCAGACTTTTTACTCGAACAATTCTGGGC
66 AGCGTAACCTAGAAAGGATTTTGAAGCTCAAAATA-TCAGACTTTGTATTCGAACAATTCTGGGC
*
13336912 ATAAAAAACATTCGAACAATTTTCGTGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTG
130 ATAAAAAACATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTG
13336977 TAAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAA
195 TAAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAA
*
13337042 AACCCATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTA
260 AACCTATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTA
13337107 GATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATA
325 GATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATA
*
13337172 TTATTTGTGAAGTTGTTATTTGCGCTTGATGTGATTAGCTGTCTGCTAACTTGTTTTAGCAGTTT
390 TTATTTGTGAAGTTGTTATTGGCGCTTGATGTGATTAGCTGTCTGCTAACTTGTTTTAGCAGTTT
*
13337237 AT---AGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTTTTCGAATATGATTTTCT
455 ATAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCT
* *
13337299 CTATAGTTCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATTAAAATGAATTTGA
520 CTATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGAAAATGAATTTGA
*
13337364 ATGTATTGAATCG
585 ATATATTGAATCG
13337377 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAG-TTTA
1 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTTTA
13337441 AGCGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCAGACTTTGT-TTCGAACAATTCTGGGCA
66 AGCGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCAGACTTTGTATTCGAACAATTCTGGGCA
*
13337505 TAAAAAATATTCGAACAATTTTCGCGTGATTTTAA-TTTTT-TTGTTTTTCATAGTGTCAAGTGT
131 TAAAAAACATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
13337568 AAGTTATAAAGGATTTTGAAGTTT-AAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAAA
196 AAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAAA
13337632 ACC-ATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTAG
261 ACCTATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTAG
13337696 ATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATAT
326 ATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATAT
*
13337761 TATTTGTGAAGTTGTTATT-GCGCTTGATGTGATTAGATGTCTGCTAACTTGTTTTAGCAGTTTA
391 TATTTGTGAAGTTGTTATTGGCGCTTGATGTGATTAGCTGTCTGCTAACTTGTTTTAGCAGTTTA
13337825 TAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCTC
456 TAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCTC
13337890 TATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAAT-AAAATGAATTTGAA
521 TATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGAAAATGAATTTGAA
13337954 TATATTGAATCG
586 TATATTGAATCG
*
13337966 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTCTA
1 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTTTA
*
13338031 AGCGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCTGACTTTGTATTCGAACAATTCTGGGCA
66 AGCGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCAGACTTTGTATTCGAACAATTCTGGGCA
* *
13338096 TAAAAAATATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTCTTTTTCATAGTGTCAAGTGT
131 TAAAAAACATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
* *
13338161 TAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCAGGGCATAAA
196 AAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAAA
* *
13338226 ACCTATTCGCACAATTATCGCACGATTTTAATTTTTTGCCGTGTTTCATACTTATTGGCTTTTAG
261 ACCTATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTAG
*
13338291 ATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTAATATTTGGATAT
326 ATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATAT
* * *
13338356 TATTTGTGAAGTTGTTATTCGTGCTTGAAGTGATTAGCTGTCTGCTAACTTGTTTTAGCAGTTTA
391 TATTTGTGAAGTTGTTATTGGCGCTTGATGTGATTAGCTGTCTGCTAACTTGTTTTAGCAGTTTA
*
13338421 TAGAATGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCTC
456 TAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCTC
*
13338486 TATAGTCCAGCTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGAAAATGAATTTGAA
521 TATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGAAAATGAATTTGAA
*
13338551 TATATTAAATCG
586 TATATTGAATCG
* ** *
13338563 ATTGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTCCAATTTTTGCACAGTTTTA
1 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTTTA
* * * *
13338628 AGCGTAACCTAGAAAGGATCTCT-AAGCTCAAAATATTAGACTTTTTACTCGAACAATTCTGGGC
66 AGCGTAACCTAGAAAGGAT-TTTGAAGCTCAAAATATCAGACTTTGTATTCGAACAATTCTGGGC
* * * *
13338692 ATAAAAAACATTCGAACAATTTTTGTGTGATTTTAATTTTTTTTTGCTTTTCATAGTGTCAAGTG
130 ATAAAAAACATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTG
*
13338757 TAAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCTGGGTATAA
195 TAAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAA
*
13338822 AACCCATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTA
260 AACCTATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTA
* * *
13338887 GATACATTTTTAGGTGCTCTAAGAAACTTGTCAGATTACATTTTAATGATCTTGATATTTGGATA
325 GATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATA
* * * *
13338952 TTATTTGTGAAGTTCTTATTGGTGCTTGATGTGATTACCTGTCTACTAACTTGTTTTAGCAGTTT
390 TTATTTGTGAAGTTGTTATTGGCGCTTGATGTGATTAGCTGTCTGCTAACTTGTTTTAGCAGTTT
13339017 ATAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCT
455 ATAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCT
* *
13339082 CTATAGTTCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATTAAAATGAATTTGA
520 CTATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGAAAATGAATTTGA
*
13339147 ATGTATTGAATCG
585 ATATATTGAATCG
* *
13339160 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTAGTTTTTAATTTTTCCACAGTTCTA
1 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTTTA
* * *
13339225 AGCGTAACTTAGAAAGGATTTTGAAGCTCAAAATATCAAACTATGTATTCGAACAATTCTGGGCA
66 AGCGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCAGACTTTGTATTCGAACAATTCTGGGCA
* *
13339290 TAAAAAATATTCGAACAATTTTCGCGTGATTTTAATTTTTTATTGTTTTTCATAGTGTCAAGTGT
131 TAAAAAACATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
*
13339355 AAGTTATAAAGGATTTTGAAGTTTAAAAACATTAGACTTTGGTTTTGAACAATTCTGGGCATAAA
196 AAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAAA
*
13339420 A-CTCATTTGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTA
261 ACCT-ATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTA
*
13339484 GATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTCGGATA
325 GATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATA
*
13339549 TTATTTGTGAAGTTGTTATTCGCGCTTGATGTGATTAGCTGTCTGCTAACTTGTTTTAGCAGTTT
390 TTATTTGTGAAGTTGTTATTGGCGCTTGATGTGATTAGCTGTCTGCTAACTTGTTTTAGCAGTTT
* *
13339614 ATAAAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTGCTTCGAATATGATTTTCT
455 ATAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCT
*
13339679 CTATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATTAAAATGAATTTGA
520 CTATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGAAAATGAATTTGA
*
13339744 ATGTATTGAATCG
585 ATATATTGAATCG
* *
13339757 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTACACAGTTCTA
1 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTTTA
13339822 AGCGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCAGACTTTGTATTCGAACAATTCTGGGCA
66 AGCGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCAGACTTTGTATTCGAACAATTCTGGGCA
* *
13339887 TAAAAAATATTCGAACAATTTTCACGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
131 TAAAAAACATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
13339952 AAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAAA
196 AAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAAA
* *
13340017 ACCTATTCGCACAATTATCGAACGATTTTAATTTTTTGCTGTGTTTCATACTTATTGGCTTTTAG
261 ACCTATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTAG
13340082 ATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATAT
326 ATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATAT
* * * * *
13340147 TATTTGTGAAGTTGTTATTTGTGCTTGATGTGATTTAGATTTCTGCGAACTTGTTTTAGCAGTTT
391 TATTTGTGAAGTTGTTATTGGCGCTTGATGTGA-TTAGCTGTCTGCTAACTTGTTTTAGCAGTTT
13340212 ATAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCT
455 ATAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCT
* *
13340277 CTATAGTCCAATTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGGAAATGAATTTGA
520 CTATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGAAAATGAATTTGA
13340342 ATATATTGAATCG
585 ATATATTGAATCG
* *
13340355 AATGTTTTAAACCTGCTCAAACAATGAAATAAATAGCATTGGTTTTTCATTTTTCCACAGTTTTA
1 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTTTA
* * * *
13340420 AGTGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCAAACTTTGTATTTGAACAATACTGGGCA
66 AGCGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCAGACTTTGTATTCGAACAATTCTGGGCA
*
13340485 TAAAAAACATTCGAACAATTTTCACGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
131 TAAAAAACATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
* * *
13340550 AAGTTATAAAGGATTTTGCAGTTT-AAAACATCAGACTTTGCTTTTGAACAATTATGGGCATAAA
196 AAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAAA
13340614 A-CTCATTCGCACAATTATCGCACGATTTTAA-TTTTCGCTGTGTTTCATACTTATTGGCTTTTA
261 ACCT-ATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTA
*
13340677 GATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTATATTTGAATGATCTTGATATTTGGATA
325 GATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATA
* * *
13340742 TTATTTGTGAAGTTGTTATTCGCGCTTGAAGTGATTAGCTATCTGCTAACTTGTTTTAGCAGTTT
390 TTATTTGTGAAGTTGTTATTGGCGCTTGATGTGATTAGCTGTCTGCTAACTTGTTTTAGCAGTTT
*
13340807 ATAGAATGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCT
455 ATAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCT
*
13340872 CTATAGTCCAGCTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGAAAATGAATTTGA
520 CTATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGAAAATGAATTTGA
*
13340937 ATATATTGAATGG
585 ATATATTGAATCG
* * ** *
13340950 ATTGTTTTAAACATGCTCAAACAATGAAACAAATAGCATTGGTTTCCAATTTTTACACAGTTTTA
1 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTTTA
* * * *
13341015 AGCGTAACCTAGAAAGGATCTTGAAGCTCAAAATATTAGACTTTTTACTCGAACAATTCTGGGCA
66 AGCGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCAGACTTTGTATTCGAACAATTCTGGGCA
* *
13341080 TAAAAAACATTCGAACAATTTTCGTGTGATTTTAATTTTTTCTTGTTTTTCATAGTGTCAAGTGT
131 TAAAAAACATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
*
13341145 AAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACTATTCTGGGCATAAA
196 AAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAAA
* *
13341210 ACCTATTCGTACAATTATCGCACGATTTTAATTTTTTGCTGTGTTTCATACTTATTGGCTTTTAG
261 ACCTATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTAG
13341275 ATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATAT
326 ATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATAT
* * *
13341340 TATTTGTGAAGTTGTTATTGGTGCTTGATGTGATTTAGATGTCTGCGAACTTGTTTTAGCAGTTT
391 TATTTGTGAAGTTGTTATTGGCGCTTGATGTGA-TTAGCTGTCTGCTAACTTGTTTTAGCAGTTT
13341405 ATAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCT
455 ATAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCT
* * *
13341470 ATATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGGAAATTAATTTGA
520 CTATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGAAAATGAATTTGA
*
13341535 ATATATTTAATCG
585 ATATATTGAATCG
*
13341548 AATGTTTTAAACCTGCTCAAAGAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTTTA
1 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTTTA
* * *
13341613 AGTGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCAGACTTTGTATTTGAACAATTCTGGGTA
66 AGCGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCAGACTTTGTATTCGAACAATTCTGGGCA
13341678 TAAAAAACATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
131 TAAAAAACATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
* *
13341743 AAGTTATAAAGGATTTTGCAGTTT-AAAACATCAGACTTTGGTTTTGAACAATTATGGGCATAAA
196 AAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAAA
* *
13341807 ACTTATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTGTTAG
261 ACCTATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTAG
13341872 ATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATAT
326 ATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATAT
* * *
13341937 TATTTGTGAAGTTGTTATTCGCGCTTGAAGTGATTAGCTGTCTACTAACTTGTTTTAGCAGTTTA
391 TATTTGTGAAGTTGTTATTGGCGCTTGATGTGATTAGCTGTCTGCTAACTTGTTTTAGCAGTTTA
** * * *
13342002 TAGATTGAGCACTAAAAGCTTAATGCTTTTGAAATTTTACGTTTTTCTTCGAATATTATTTTCTC
456 TAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCTC
* *
13342067 TATAGTGCAGCTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGAAAATGAATTTGAA
521 TATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGAAAATGAATTTGAA
13342132 TATATTGAATCG
586 TATATTGAATCG
* * *
13342144 ATTGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTCAATTTTTACACAGTTTTA
1 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTTTA
* * * * *
13342209 AGCGTAACCTAGAAAGGATCTTGAAGCTCAAAATATTAGACTTTTTACTCAAACAATTCTGGGCA
66 AGCGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCAGACTTTGTATTCGAACAATTCTGGGCA
* *
13342274 TAAAAAACATTCGAACAATTTTCGTGTGATTTTAATTTTTTGTTTTTTTTCATAGTGTCAAGTGT
131 TAAAAAACATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
13342339 AAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAAA
196 AAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAAA
* * *
13342404 ACCCATTCGGACAATTATCGCACGATTTTAATTTTTCGCTGTGCTTCATACTTATTGGCTTTTAG
261 ACCTATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTAG
13342469 ATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATAT
326 ATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATAT
13342534 TATTTGTGAAGTTGTTATTGGCGCTTGATGTGATTAGCTGTCTGCTAACTTGTTTTAGCAGTTTA
391 TATTTGTGAAGTTGTTATTGGCGCTTGATGTGATTAGCTGTCTGCTAACTTGTTTTAGCAGTTTA
13342599 TAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCTC
456 TAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCTC
* *
13342664 TGTAGTCCAGCTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGAAAATGAATTTGAA
521 TATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGAAAATGAATTTGAA
13342729 TATATTGAATCG
586 TATATTGAATCG
* *
13342741 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTCAATTTTTACACAGTTTTA
1 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTTTA
* * * * * *
13342806 AGCGTAACCTAGAAAAGATCTTGAAGCTCAAAATATTATACTTTTTACTCGAACAATTCTGGGCA
66 AGCGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCAGACTTTGTATTCGAACAATTCTGGGCA
** *
13342871 TAAAAAACATTCGAACAATTTTCATGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTTAAGTGT
131 TAAAAAACATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
* *
13342936 AAGTTATAAAGGATTTTGAAGTTTAAAAACATCAAACTTTGGTTTTGAACAATTCTGGGAATAAA
196 AAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAAA
13343001 A-CTCATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTA
261 ACCT-ATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTA
13343065 GATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATA
325 GATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATA
*
13343130 TTATTTGTGAAGTTGTTATTGGCGCTTGATGTGATTAGCTGTCTGCTAACTTGTTTTAACAGTTT
390 TTATTTGTGAAGTTGTTATTGGCGCTTGATGTGATTAGCTGTCTGCTAACTTGTTTTAGCAGTTT
13343195 ATAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCT
455 ATAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCT
*
13343260 CTATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGGAAATGAATTTGA
520 CTATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGAAAATGAATTTGA
13343325 ATATATTGAATCG
585 ATATATTGAATCG
13343338 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTTTA
1 AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTTTA
* * *
13343403 AGTGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCAGTCTTTGTATTTGAACAATTCTGGGCA
66 AGCGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCAGACTTTGTATTCGAACAATTCTGGGCA
13343468 TAAAAAACATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
131 TAAAAAACATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
* *
13343533 AAGTTATAAAGGATTTTGCAGTTT-AAAACATCAGACTTTGGTTTTGAACAATTATGGGCATAAA
196 AAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAAA
13343597 A-CTCATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTA
261 ACCT-ATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTA
13343661 ATTTTTCGAT
Statistics
Matches: 8830, Mismatches: 383, Indels: 81
0.95 0.04 0.01
Matches are distributed among these distances:
587 45 0.01
588 145 0.02
589 128 0.01
590 344 0.04
591 213 0.02
592 573 0.06
593 462 0.05
594 235 0.03
595 1231 0.14
596 1003 0.11
597 3706 0.42
598 745 0.08
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (597 bp):
AATGTTTTAAACCTGCTCAAACAATGAAACAAATAGCATTGGTTTTTAATTTTTCCACAGTTTTA
AGCGTAACCTAGAAAGGATTTTGAAGCTCAAAATATCAGACTTTGTATTCGAACAATTCTGGGCA
TAAAAAACATTCGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGT
AAGTTATAAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGTTTTGAACAATTCTGGGCATAAA
ACCTATTCGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTGGCTTTTAG
ATACATTTTTAGGTGCTCTAAGGAACTTGTGAGATTACATTTGAATGATCTTGATATTTGGATAT
TATTTGTGAAGTTGTTATTGGCGCTTGATGTGATTAGCTGTCTGCTAACTTGTTTTAGCAGTTTA
TAGAAGGAGCACTAAAAGCCTAATGCTTTTGAAATTTTATGTTTTTCTTCGAATATGATTTTCTC
TATAGTCCAGTTTTAAAATATGAAAGAATTGTTTTAGAAGGTTTTTAAATGAAAATGAATTTGAA
TATATTGAATCG
Found at i:13340003 original size:126 final size:124
Alignment explanation
Indices: 13339834--13340066 Score: 317
Period size: 126 Copynumber: 1.9 Consensus size: 124
13339824 CGTAACCTAG
* *
13339834 AAAGGATTTTGAAGCTCAAAATATCAGACTTTGTATTCGAACAATTCTGGGCATAAAAAATATTC
1 AAAGGATTTTGAAGCTAAAAACATCAGACTTTGTATTCGAACAATTCTGGGCATAAAAAATATTC
* * *
13339899 GAACAATTTTC-ACGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGTAAGTTAT
66 GAACAATTATCAAC--GATTTTAATTTTTTGCTGTGTTTCATAGTGTCAAGTGTAAGTTAT
* * **
13339959 AAAGGATTTTGAAGTTTAAAAACATCAGACTTTGGT-TTTGAACAATTCTGGGCATAAAACCTAT
1 AAAGGATTTTGAAG-CTAAAAACATCAGACTTT-GTATTCGAACAATTCTGGGCATAAAAAATAT
*
13340023 TCGCACAATTATCGAACGATTTTAATTTTTTGCTGTGTTTCATA
64 TCGAACAATTATC-AACGATTTTAATTTTTTGCTGTGTTTCATA
13340067 CTTATTGGCT
Statistics
Matches: 94, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
125 14 0.15
126 76 0.81
127 2 0.02
128 2 0.02
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (124 bp):
AAAGGATTTTGAAGCTAAAAACATCAGACTTTGTATTCGAACAATTCTGGGCATAAAAAATATTC
GAACAATTATCAACGATTTTAATTTTTTGCTGTGTTTCATAGTGTCAAGTGTAAGTTAT
Found at i:13341834 original size:125 final size:125
Alignment explanation
Indices: 13341625--13341856 Score: 304
Period size: 125 Copynumber: 1.9 Consensus size: 125
13341615 TGTAACCTAG
* * *
13341625 AAAGGATTTTGAAGCTCAAAATATCAGACTTTGTATTTGAACAATTCTGGGTATAAAAAACATTC
1 AAAGGATTTTGAAGCTCAAAACATCAGACTTTGTATTTGAACAATTATGGGCATAAAAAACATTC
* ** * * *
13341690 GAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGTAAGTTAT
66 GAACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATAGTGTCAAGTGTAAGTTAT
* * * ***
13341750 AAAGGATTTTGCAGTTTAAAACATCAGACTTTGGT-TTTGAACAATTATGGGCATAAAACTTATT
1 AAAGGATTTTGAAGCTCAAAACATCAGACTTT-GTATTTGAACAATTATGGGCATAAAAAACATT
*
13341814 CGCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATA
65 CGAACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATA
13341857 CTTATTGGCT
Statistics
Matches: 90, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
125 88 0.98
126 2 0.02
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.40
Consensus pattern (125 bp):
AAAGGATTTTGAAGCTCAAAACATCAGACTTTGTATTTGAACAATTATGGGCATAAAAAACATTC
GAACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATAGTGTCAAGTGTAAGTTAT
Found at i:13343548 original size:125 final size:125
Alignment explanation
Indices: 13343415--13343646 Score: 313
Period size: 125 Copynumber: 1.9 Consensus size: 125
13343405 TGTAACCTAG
* * *
13343415 AAAGGATTTTGAAGCTCAAAATATCAGTCTTT-GTATTTGAACAATTCTGGGCATAAAAAACATT
1 AAAGGATTTTGAAGCTCAAAACATCAGACTTTGGT-TTTGAACAATTATGGGCATAAAAAACATT
* ** * * *
13343479 CGAACAATTTTCGCGTGATTTTAATTTTTTGTTGTTTTTCATAGTGTCAAGTGTAAGTTAT
65 CGAACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATAGTGTCAAGTGTAAGTTAT
* * * **
13343540 AAAGGATTTTGCAGTTTAAAACATCAGACTTTGGTTTTGAACAATTATGGGCATAAAACTCATTC
1 AAAGGATTTTGAAGCTCAAAACATCAGACTTTGGTTTTGAACAATTATGGGCATAAAAAACATTC
*
13343605 GCACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATA
66 GAACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATA
13343647 CTTATTGGCT
Statistics
Matches: 91, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
125 89 0.98
126 2 0.02
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.39
Consensus pattern (125 bp):
AAAGGATTTTGAAGCTCAAAACATCAGACTTTGGTTTTGAACAATTATGGGCATAAAAAACATTC
GAACAATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATAGTGTCAAGTGTAAGTTAT
Found at i:13344190 original size:158 final size:158
Alignment explanation
Indices: 13343779--13344705 Score: 691
Period size: 158 Copynumber: 5.8 Consensus size: 158
13343769 GCGGGATGAG
* * * * * * *
13343779 CAGCACGTAGA-GGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGTCGGTTAAGC
1 CAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGAGCATTCTGCCTCTCC-GTCGGCTGAGC
* * *
13343843 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATATGGAGCTCATTCCATGTCTAAGCCCTAG-
65 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGA
* * ** *
13343907 CCGGACTGAGTGTTGTGGCAGCGGGA-CTGG
129 TCGGACTGAGGGTTGTGGCAGCAAGATC-GA
* * * * * * * * *
13343937 CAGCACACAGAGGGGGATTGGGCCGATCCCCGACTTGTGCATTATGCCTCTCCGACCAGCTCAGC
1 CAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGAGCATTCTGCCTCTCCG-TCGGCTGAGC
* * * * **
13344002 ACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCAGA
65 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAGA
* * *
13344066 TCGGACTGAGTGTTGTGGTAGCAAGATCAA
129 TCGGACTGAGGGTTGTGGCAGCAAGATCGA
* * * *
13344096 CAGTACGCAG-GGGGGATCGGGTCTG-TCTCCGGCTTGAGCATTCTGCCTCTCTGGCAGGCTGAG
1 CAGCACGCAGAGGGGGATCGGG-CTGATCCCCGGCTTGAGCATTCTGCCTCTCCGTC-GGCTGAG
* *
13344159 CGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCA-
64 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAG
* * * *
13344223 ACCGGA-TCGAGGGTTATGGCAGTAGGACCGACAGCGGGATTGG
128 ATCGGACT-GAGGGTTGTGGC---A-G--C-A-A----GATCGA
* *
13344266 CAGCACGCAGAGGGGGA-CTGGGCTGATCCCCGGCTT-ACGCATTAC-GCCTCTCCGACCGACTG
1 CAGCACGCAGAGGGGGATC-GGGCTGATCCCCGGCTTGA-GCATT-CTGCCTCTCCG-TCGGCTG
* * * * **
13344328 AGTGCCCGCACGCTCGTTTCGTGGGATGACTTAGTCATACGGAGTTCATTCCCA-GTCTAAGATC
62 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCC
* * * * * * *
13344392 GGATCGGACCGAAGGTTGCGACAGTAGGATCGA
126 AGATCGGACTGAGGGTTGTGGCAGCAAGATCGA
* * * *
13344425 CAGCATGCAG-GGGGGATCGGG-TCGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGACTGAG
1 CAGCACGCAGAGGGGGATCGGGCT-GATCCCCGGCTTGAGCATTCTGCCTCTCCG-TCGGCTGAG
* * *
13344488 TGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
64 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAG
* * *
13344553 -TCGGACTGAGGGTTGTGGCAGCGAGACCGG
128 ATCGGACTGAGGGTTGTGGCAGCAAGATCGA
* * * * * ** * * * *
13344583 CATCACGTAGAAGAGGAT-TGAATGGATCCCCAGCTTGTGCATTATGCCTCTCCGATCGGCTCAG
1 CAGCACGCAGAGGGGGATCGGGCT-GATCCCCGGCTTGAGCATTCTGCCTCTCCG-TCGGCTGAG
* * * * *
13344647 TGCCCGAACGCTCATTTCGTGGGTTGACTTAGACATACGGAGTTCATTCCCA-GTCTAAG
64 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
13344706 ATCAGATTAG
Statistics
Matches: 610, Mismatches: 119, Indels: 79
0.75 0.15 0.10
Matches are distributed among these distances:
157 10 0.02
158 235 0.39
159 228 0.37
160 7 0.01
161 1 0.00
162 1 0.00
164 2 0.00
165 1 0.00
166 1 0.00
167 1 0.00
168 1 0.00
170 18 0.03
171 99 0.16
172 5 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
CAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGAGCATTCTGCCTCTCCGTCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGATC
GGACTGAGGGTTGTGGCAGCAAGATCGA
Found at i:13344360 original size:329 final size:329
Alignment explanation
Indices: 13343682--13344573 Score: 929
Period size: 329 Copynumber: 2.7 Consensus size: 329
13343672 GAGCATCTGC
* * * * *
13343682 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATAGAGTTCA
1 ACGCTCGTTTCGTGGGATGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-AT-CAGA--TC-
* ** * * * * * * *
13343747 GACCAGACCGAGGGTTGCGACAGCGGGATGAGCAGCACGTAGAGGGGACCGGGCCGATCCCTGGC
61 G----GACCGAAGGTTGCGACAGCAAGATCAACAGCACGCAGGGGGGATCGGGTCGATCCCCGGC
* * ** * *
13343812 TTGCGCATTCTGCCTCTCC-AGTCGGTTAAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGC
122 TTGAGCATTCTACCTCTCCGAG-CGACTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGC
* * * * * *
13343876 ATATGGAGCTCATTCCATGTCTAAGCCCTAGCCGGACTGAGTG-T-T----GT--G---G-CAGC
186 ATACGAAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTATGGCAGTAGGACCGACAGC
* ** *
13343929 GGGACTGGCAGCACACAGAGGGGGATTGGGCCGATCCCCGACTTGTGCATTATGCCTCTCCGACC
251 GGGACTGGCAGCACACAGAGGGGGACTGGGCCGATCCCCGACTTACGCATTACGCCTCTCCGACC
13343994 AGCTCAGCACCCGA
316 AGCTCAGCACCCGA
* *
13344008 ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACT
1 ACGCTCGTTTCGTGGGATGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACC
* ** * *
13344073 G-AGTGTTGTGGTAGCAAGATCAACAGTACGCAGGGGGGATCGGGTCTG-TCTCCGGCTTGAGCA
66 GAAG-GTTGCGACAGCAAGATCAACAGCACGCAGGGGGGATCGGGTC-GATCCCCGGCTTGAGCA
* * * *
13344136 TTCTGCCTCTCTG-GCAGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGAA
129 TTCTACCTCTCCGAGC-GACTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATACGAA
*
13344200 GTTCATTCCATGTCTAAGCCCCAACCGGA-TCGAGGGTTATGGCAGTAGGACCGACAGCGGGATT
193 GTTCATTCCATGTCTAAGCCCCAACCGGACT-GAGGGTTATGGCAGTAGGACCGACAGCGGGACT
* * * *
13344264 GGCAGCACGCAGAGGGGGACTGGGCTGATCCCCGGCTTACGCATTACGCCTCTCCGACC-GACTG
257 GGCAGCACACAGAGGGGGACTGGGCCGATCCCCGACTTACGCATTACGCCTCTCCGACCAG-CTC
** *
13344328 AGTGCCCGC
321 AGCACCCGA
* * *
13344337 ACGCTCGTTTCGTGGGATGACTTAGTCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACC
1 ACGCTCGTTTCGTGGGATGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACC
* * * * *
13344402 GAAGGTTGCGACAGTAGGATCGACAGCATGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATT
66 GAAGGTTGCGACAGCAAGATCAACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGAGCATT
* * * * *
13344467 CTACCTCTCCGATCGACTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTT
131 CTACCTCTCCGAGCGACTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATACGAAGTT
** *
13344532 CATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAG
196 CATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTATGGCAG
13344574 CGAGACCGGC
Statistics
Matches: 473, Mismatches: 71, Indels: 41
0.81 0.12 0.07
Matches are distributed among these distances:
316 3 0.01
317 130 0.27
318 2 0.00
319 1 0.00
321 1 0.00
322 2 0.00
323 2 0.00
324 3 0.01
325 3 0.01
326 49 0.10
328 3 0.01
329 270 0.57
330 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (329 bp):
ACGCTCGTTTCGTGGGATGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACC
GAAGGTTGCGACAGCAAGATCAACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGAGCATT
CTACCTCTCCGAGCGACTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATACGAAGTT
CATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTATGGCAGTAGGACCGACAGCGGGACTGGCA
GCACACAGAGGGGGACTGGGCCGATCCCCGACTTACGCATTACGCCTCTCCGACCAGCTCAGCAC
CCGA
Found at i:13344990 original size:26 final size:26
Alignment explanation
Indices: 13344961--13345013 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13344951 GATGACTTAG
*
13344961 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13344987 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13345013 G
1 G
13345014 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13345295 original size:159 final size:159
Alignment explanation
Indices: 13345072--13345490 Score: 475
Period size: 159 Copynumber: 2.6 Consensus size: 159
13345062 GGACCGGGTC
* * * * * *
13345072 GATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCCCGTTTCTTGGGTT
1 GATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTT
* ** * **
13345137 GGCTTAGGCATA-GAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAA
66 GGCTTAGGCATACG-GAGTTCATTCCATGTCTAAGCACCAACCGGACCAAGGGTTACGGCAGC-A
**
13345201 G-ATCGGTAGCACGCAGAAGGGGATCGAGCA
129 GTATCGACAGCACGCAGAAGGGGATCGAGCA
* * * * * * *
13345231 GATCTCTGACTTGTGCATTATGCCTCTCCGGTCGGCTCAGTGCCCGAATGCTCGTTTCGTGGGTT
1 GATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTT
* * * * * **
13345296 GACTTAGACATACGGAGTTCATTGCCA-GTCTAAGAACGAACCGGACCAAGTGTTACGGTTGCAG
66 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAACCGGACCAAGGGTTACGGCAGCAG
** *
13345360 TATCGACAGCACGCAGGGGGGGATCGAGCC
130 TATCGACAGCACGCAGAAGGGGATCGAGCA
* * * *
13345390 GATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTT
1 GATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTT
13345455 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13345491 TACAGAGTTC
Statistics
Matches: 211, Mismatches: 45, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
158 5 0.02
159 202 0.96
160 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
GATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACCGGACCAAGGGTTACGGCAGCAGT
ATCGACAGCACGCAGAAGGGGATCGAGCA
Found at i:13345491 original size:26 final size:26
Alignment explanation
Indices: 13345462--13345513 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13345452 GTTGGCTTAG
*
13345462 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
13345488 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
13345514 TATCGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:13345701 original size:26 final size:26
Alignment explanation
Indices: 13345671--13345749 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
13345661 GTTGACTTAG
13345671 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13345697 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13345723 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13345749 G
1 G
13345750 ATCGGCCAGA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13346074 original size:26 final size:26
Alignment explanation
Indices: 13346038--13346090 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13346028 GTTGGCTTAG
13346038 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
13346064 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
13346090 G
1 G
13346091 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:13346283 original size:26 final size:26
Alignment explanation
Indices: 13346247--13346299 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13346237 GTTGACTTAG
*
13346247 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13346273 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13346299 G
1 G
13346300 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13347648 original size:159 final size:158
Alignment explanation
Indices: 13347467--13347830 Score: 394
Period size: 158 Copynumber: 2.3 Consensus size: 158
13347457 CCGCACGCCT
* * * * *
13347467 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCAAAGCCCCAGCC-AGACCGAGGG
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCGA-ACCGAAGG
* * ** * *
13347531 TTGTGGCAGTGGGA-CAGACAGCACGCAGAGGGGGACCATGCCGATCCCTGCCTTTCGCATTATG
65 TTGCGACAGTAAGATCA-ACAGCACGCAG-GGGGGACCAGGCCGATCCCTGCCTTGCGCATTATG
*
13347595 CCTCCCCGACCGACTCAACGCTCG-AACGCTC
128 CCTCCCCGACCGACTCAACGCCCGTAA-GCTC
* * ** *
13347626 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCAAACCGAACTGAAGG
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCAAACCGAACCGAAGG
* * * * * * * *
13347690 TTGCGACAGTAAGATCAATAGCACGCAGGGGGGATCGGGTCGGTCCTTGGCTTGCGCATTCTGCC
65 TTGCGACAGTAAGATCAACAGCACGCAGGGGGGACCAGGCCGATCCCTGCCTTGCGCATTATGCC
* * *
13347755 TCTCCGACCGACTGAGCGCCCGTAAGCTC
130 TCCCCGACCGACTCAACGCCCGTAAGCTC
*
13347784 GTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13347831 ATACATAGTT
Statistics
Matches: 168, Mismatches: 32, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
158 92 0.55
159 73 0.43
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCGAACCGAAGGT
TGCGACAGTAAGATCAACAGCACGCAGGGGGGACCAGGCCGATCCCTGCCTTGCGCATTATGCCT
CCCCGACCGACTCAACGCCCGTAAGCTC
Found at i:13347795 original size:158 final size:158
Alignment explanation
Indices: 13347391--13347829 Score: 422
Period size: 159 Copynumber: 2.8 Consensus size: 158
13347381 TCAGGATCAG
* * * * * * * *
13347391 CAGCACGTAGA-GGGGATCGGGCCGATCCCCGACTTGCGTATTCTACCTCTCCGACTGACTGAGC
1 CAGCACGCAGAGGGGGACCAGGCCGATCCCTGCCTTGCGCATTCTGCCTCTCCGACCGACTGAGC
* * * * * * *
13347455 ACCCGCACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCAAAGCCCCAG
66 GCCCG-AAGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAA
* * * **
13347519 CCAGACCGAGGGTTGTGGCAGTGGGACAGA
129 CCAGACCGAAGGTTGCGACAGTAAGACAGA
* * * * * *
13347549 CAGCACGCAGAGGGGGACCATGCCGATCCCTGCCTTTCGCATTATGCCTCCCCGACCGACTCAAC
1 CAGCACGCAGAGGGGGACCAGGCCGATCCCTGCCTTGCGCATTCTGCCTCTCCGACCGACTGAGC
* * * *
13347614 GCTCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCAAA
66 GCCCGAA-GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCAAA
*
13347678 CC-GAACTGAAGGTTGCGACAGTAAGATCA-A
129 CCAG-ACCGAAGGTTGCGACAGTAAGA-CAGA
* * * * * * *
13347708 TAGCACGCAG-GGGGGATCGGGTCGGTCCTTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGC
1 CAGCACGCAGAGGGGGACCAGGCCGATCCCTGCCTTGCGCATTCTGCCTCTCCGACCGACTGAGC
*
13347772 GCCCGTAAGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
66 GCCCG-AAGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
13347830 CATACATAGT
Statistics
Matches: 225, Mismatches: 48, Indels: 16
0.78 0.17 0.06
Matches are distributed among these distances:
158 104 0.46
159 118 0.52
160 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (158 bp):
CAGCACGCAGAGGGGGACCAGGCCGATCCCTGCCTTGCGCATTCTGCCTCTCCGACCGACTGAGC
GCCCGAAGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAACC
AGACCGAAGGTTGCGACAGTAAGACAGA
Found at i:13348047 original size:26 final size:26
Alignment explanation
Indices: 13347999--13348051 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13347989 GTTGACTTAG
*
13347999 GCATACGGAGTTCATCACTAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
13348025 GCATACGGAGTTCATTC-CCAGTCTAA
1 GCATACGGAGTTCA-TCACCAGTCTAA
13348051 G
1 G
13348052 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:13348372 original size:26 final size:26
Alignment explanation
Indices: 13348342--13348394 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13348332 GTTGGCTTAG
13348342 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13348368 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13348394 G
1 G
13348395 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13349379 original size:159 final size:157
Alignment explanation
Indices: 13349170--13349592 Score: 426
Period size: 159 Copynumber: 2.7 Consensus size: 157
13349160 TGCGCGTTCG
* * *
13349170 ACCTCTCCGGTCGGCTGAGCACCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATA-GTGAGTTC
1 ACCTCTCC-GTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG-GAGTTC
** * * *
13349234 ATTCCATGTCTAACCACCAGCCGGATCGAGGGTTGTGGCAGTGGGATCGGCAATATGCAGAGGGG
64 ATTCCATGTCTAACCACCAGCCGGATCGAGGGTTGTGGCAGCAGGATCGACAACACGCA-AGGGG
13349299 GA-CTGGACCGATCCTCAGCTTT-CGCATTAT
128 GATC-GGACCGATCC-CAGCTTTGCGCATTAT
* * * * *
13349329 GCCTCTCCAGTCGGCTTAGCACACGCACGCTCGTTTCATGGTTTGACTTAGGCATACGGAGTTCA
1 ACCTCTCC-GTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * * *
13349394 TTCCCA-GTCTAA-GATCGGACTGGATTGAGGGTTGTGGTAGCAGGATCGACAGCACGTAAGGGG
65 TT-CCATGTCTAACCACCAG-CCGGATCGAGGGTTGTGGCAGCAGGATCGACAACACGCAAGGGG
* * *
13349457 GATCGGACCGATCCCTGGTTTGCGCATTCT
128 GATCGGACCGATCCCAGCTTTGCGCATTAT
* ** * *
13349487 ACCTTTCCGATCGGCTGAGTGCCCACACGCTCGTTCCATGGGTTGGCTTAGGCATACGGAGTTCA
1 ACCTCTCCG-TCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
* * * *
13349552 TTCCATGTCTAACC-CCAACCGAACCGAGGGTTGTGGTAGCA
65 TTCCATGTCTAACCACCAGCCGGATCGAGGGTTGTGGCAGCA
13349593 AGACCGGCAA
Statistics
Matches: 213, Mismatches: 43, Indels: 18
0.78 0.16 0.07
Matches are distributed among these distances:
157 28 0.13
158 89 0.42
159 92 0.43
160 4 0.02
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
ACCTCTCCGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAACCACCAGCCGGATCGAGGGTTGTGGCAGCAGGATCGACAACACGCAAGGGGGAT
CGGACCGATCCCAGCTTTGCGCATTAT
Found at i:13349751 original size:26 final size:26
Alignment explanation
Indices: 13349721--13349772 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13349711 GTTGACTTAG
13349721 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
13349747 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13349773 AATCATACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13350028 original size:183 final size:183
Alignment explanation
Indices: 13349797--13350186 Score: 588
Period size: 183 Copynumber: 2.1 Consensus size: 183
13349787 AAGGGTTACG
* * * *
13349797 ACAGCACGCAGAGGGGGACCGAG-CTGATCCCCAACTTACGCATTCTGCCTTTTCGGTCGGCTGA
1 ACAGCACGC--AGGGGGACCGGGTC-GATCCCCAACTTACGCATTCTGCCTCTCCGATCGGCTGA
*
13349861 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATA
63 GCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA-TCCATAGTCTAAGCATA
13349925 CGGAGTTCA-TTCTGAGTCTAAGATCGCACCGGACCGAGGGTTACGGCAGCAGGATCA
127 CGGAGTTCATTTC-GAGTCTAAGATCGCACCGGACCGAGGGTTACGGCAGCAGGATCA
* * *
13349982 ACAGCACGCAGGGGGATCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGTTGAGCG
1 ACAGCACGCAGGGGGACCGGGTCGATCCCCAACTTACGCATTCTGCCTCTCCGATCGGCTGAGCG
*
13350047 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGA
66 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCATAGTCTAAGCATACGGA
* * * * *
13350112 GTTCATTTCGAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCAGGATCG
131 GTTCATTTCGAGTCTAAGATCGCACCGGACCGAGGGTTACGGCAGCAGGATCA
13350165 ACAGCACGCAGGGGGACCGGGT
1 ACAGCACGCAGGGGGACCGGGT
13350187 TGACTTAGGC
Statistics
Matches: 187, Mismatches: 15, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
182 4 0.02
183 170 0.91
184 4 0.02
185 9 0.05
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (183 bp):
ACAGCACGCAGGGGGACCGGGTCGATCCCCAACTTACGCATTCTGCCTCTCCGATCGGCTGAGCG
CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCATAGTCTAAGCATACGGA
GTTCATTTCGAGTCTAAGATCGCACCGGACCGAGGGTTACGGCAGCAGGATCA
Found at i:13350125 original size:26 final size:26
Alignment explanation
Indices: 13350077--13350129 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13350067 GTTGGCTTAG
*
13350077 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCGAGTCTAA
**
13350103 GCATACGGAGTTCATTTCGAGTCTAA
1 GCATACGGAGTTCATCCCGAGTCTAA
13350129 G
1 G
13350130 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCGAGTCTAA
Found at i:13350297 original size:118 final size:118
Alignment explanation
Indices: 13350065--13350280 Score: 319
Period size: 118 Copynumber: 1.8 Consensus size: 118
13350055 CCCGTTTCGT
* * * *
13350065 GGGTTGGCTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTTCGAGTCTAAG
1 GGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCACACGGAGTTCATTCCCAGTCTAAG
* * *
13350130 ATCGGATCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGACC
66 ATCGGACCAGATCGAAGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGACC
**
13350183 GGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCACGTGGAGTTCATTCCCAGTCTAA
1 GGGTTGACTTAGGCATACGGAGTTCA-TCCCTAGTCTAAGCACACGGAGTTCATTCCCAGTCTAA
13350247 GATCGGACCAGA-CAGAAGGTTGCGGCAGCAGGAT
65 GATCGGACCAGATC-GAAGGTTGCGGCAGCAGGAT
13350281 TGGCAGGATG
Statistics
Matches: 87, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
117 1 0.01
118 82 0.94
119 4 0.05
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (118 bp):
GGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCACACGGAGTTCATTCCCAGTCTAAG
ATCGGACCAGATCGAAGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGACC
Found at i:13350583 original size:159 final size:158
Alignment explanation
Indices: 13350295--13350722 Score: 360
Period size: 159 Copynumber: 2.7 Consensus size: 158
13350285 AGGATGCAGG
* * * *
13350295 GGGGACCAAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGCGCACCCGCATGCCC
1 GGGGACCAAGCCGATCCCCGGCTTGCGCATTATGCCTCTCTCGACGGCTGCGCACCCGCACGCCC
* * * *
13350360 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAGCTGGACTGAGGGTT
66 TTTCATGGGTTGACTTAGGCATAGGGAGTTCAGTCCATGTCTAAGACCCAACTGGACCGAGGGTT
13350425 GTGGTAGCGGGACCAATAGCACGTAGAC
131 GTGGTAGCGGGACCAATAGCACGTAGAC
* * * *
13350453 GGGGACCGAGCCGATCCCTGGCTTGCTCATTATGCCTCT-TCGACTGGCT-CAGCGCCCGCACGC
1 GGGGACCAAGCCGATCCCCGGCTTGCGCATTATGCCTCTCTCGAC-GGCTGC-GCACCCGCACGC
* * * * * * * *
13350516 TCGTTTTATGGGTTGACTTATGCATATGGAGTTCATTCCTAT-TCTAATATCGAACTGGACCGAG
64 -CCTTTCATGGGTTGACTTAGGCATAGGGAGTTCAGTCC-ATGTCTAAGACCCAACTGGACCGAG
* * * * * * * **
13350580 GGTTGCGATAGTGGGATCGACAGCACGCAGGG
127 GGTTGTGGTAGCGGGACCAATAGCACGTAGAC
* ** * * * * * * *
13350612 GGGGATCGGGACGATCCCCGGCTTGTGCATTCTGCCTCTCT-GGCTGGCCGAGCACCCGCACACT
1 GGGGACCAAGCCGATCCCCGGCTTGCGCATTATGCCTCTCTCGAC-GGCTGCGCACCCGCACGC-
* * * ** * *
13350676 CATTTCGTGGGTTGGCTTAGGCATACAGAGTTCAATCCATGCCTAAG
64 CCTTTCATGGGTTGACTTAGGCATAGGGAGTTCAGTCCATGTCTAAG
13350723 CATACGGAAT
Statistics
Matches: 212, Mismatches: 51, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
157 4 0.02
158 51 0.24
159 154 0.73
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
GGGGACCAAGCCGATCCCCGGCTTGCGCATTATGCCTCTCTCGACGGCTGCGCACCCGCACGCCC
TTTCATGGGTTGACTTAGGCATAGGGAGTTCAGTCCATGTCTAAGACCCAACTGGACCGAGGGTT
GTGGTAGCGGGACCAATAGCACGTAGAC
Found at i:13351450 original size:26 final size:26
Alignment explanation
Indices: 13351419--13351493 Score: 123
Period size: 26 Copynumber: 2.9 Consensus size: 26
13351409 GTTGACTTAG
*
13351419 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13351445 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13351471 GCATACGGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATCCCCAGTC
13351494 AAACATCGGA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13351844 original size:158 final size:159
Alignment explanation
Indices: 13351505--13351974 Score: 471
Period size: 159 Copynumber: 3.0 Consensus size: 159
13351495 AACATCGGAT
* * * * * * *
13351505 CGGACTGAAGGTTGTGGTAGCAGGATCGATC-GCACGCATAG-GGGACCGGGCCGATCCCCGGCT
1 CGGACCGAGGGTTGTGGCAGCGGGACCGA-CAGCACGCAGAGAGGGACCGGGCCGATCCCCAGCT
* * * * ** ** * * * *
13351568 TGCACATTCTGCCTCTCCGACCGACTGAG-AGCCTGCATGCTCATTTCATGGGTTCGTTTAGGCA
65 TGCGCATTCTACCTCTCCGACCGGCTAAGCA-CCCCCACACCCGTTTCATGGGTTGGCTTAGGCA
*
13351632 TAGGGGAGTTCATTCCATGTCTAAGCCCCAGT
129 TA-GGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * *
13351664 CGGACCGAGGGTTGTGGCAGC-GGACCGGCAGCACGCAGAGGGGGATCGGGTCGATCCTCAGCTT
1 CGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGAGGGACCGGGCCGATCCCCAGCTT
* * * *
13351728 GTGCATTCTACCTCTCCGGCCGGTTGAGCACCCCCACACCCGTTTCATGGGTTGGCTTAGGCATA
66 GCGCATTCTACCTCTCCGACCGGCTAAGCACCCCCACACCCGTTTCATGGGTTGGCTTAGGCATA
*
13351793 GGGAGTTCATTCTATGTCTAAGCCCCAGC
131 GGGAGTTCATTCCATGTCTAAGCCCCAGC
** * * *
13351822 CGGATTGATGGTTGTGGCAGCGGGACCGACAGCACGTAGAGAGGGACCGGGCCGATCCCCGGCTT
1 CGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGAGGGACCGGGCCGATCCCCAGCTT
* * * * ** * * * *
13351887 GCGTATTCTGCCTCTCCGATCGGCTAAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTACGCATA
66 GCGCATTCTACCTCTCCGACCGGCTAAGCACCCCCACACCCGTTTCATGGGTTGGCTTAGGCATA
*
13351952 CGGAGTTCATTCCATGTCTAAGC
131 GGGAGTTCATTCCATGTCTAAGC
13351975 ATACGGAGTT
Statistics
Matches: 255, Mismatches: 52, Indels: 8
0.81 0.17 0.03
Matches are distributed among these distances:
157 1 0.00
158 59 0.23
159 194 0.76
160 1 0.00
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (159 bp):
CGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGAGGGACCGGGCCGATCCCCAGCTT
GCGCATTCTACCTCTCCGACCGGCTAAGCACCCCCACACCCGTTTCATGGGTTGGCTTAGGCATA
GGGAGTTCATTCCATGTCTAAGCCCCAGC
Found at i:13351983 original size:26 final size:26
Alignment explanation
Indices: 13351947--13351999 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13351937 GTTGGCTTAC
13351947 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13351973 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13351999 G
1 G
13352000 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13352710 original size:26 final size:26
Alignment explanation
Indices: 13352670--13352722 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13352660 GTTGACCTAG
*
13352670 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGCTCATCCCCAGTCTAA
* *
13352696 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATCCCCAGTCTAA
13352722 G
1 G
13352723 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGCTCATCCCCAGTCTAA
Found at i:13352909 original size:184 final size:184
Alignment explanation
Indices: 13352596--13353261 Score: 462
Period size: 184 Copynumber: 3.5 Consensus size: 184
13352586 TACCACCCGT
* ** * * *
13352596 TCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTAAGCGTTCGCACGCTCGTTTTATGGG
1 TCGATCCCCGGCTTGCGCATCCTGCCTCTCCGGTCGGCTAAGCGCCCGCAAGCTCATTTCATGGG
*
13352661 TTGACCTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGCTCATTCCCAGTCTAAGATC
66 TTGACCTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGCTCATTCCCAGTCTAAGATC
*
13352726 AGA-CTGGACTGAGGGTTACGGCAACAGGATCGACAGCATGCAGGGGGGACCGGA
131 AGATC-GAACTGAGGGTTACGGCAACAGGATCGACAGCATGCAGGGGGGACCGGA
* * *
13352780 TCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAA-CGCCCGCAAGCTCATTTCATGG
1 TCGATCCCCGGCTTGCGCATCCTGCCTCTCCGGTCGGCT-AAGCGCCCGCAAGCTCATTTCATGG
* * * * * *
13352844 GTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCATACGAAGTTCATTCCTAGTGTAAGA
65 GTTGACCTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATACGAAGCTCATTCCCAGTCTAAGA
* * ** * * * * *
13352908 TCGGATCGAACTGAGGGTTGCGGCAGTAGGATCTG-CATCACGCACGAGGGATC-GA
129 TCAGATCGAACTGAGGGTTACGGCAACAGGATC-GACAGCATGCAGGGGGGACCGGA
* * * * * * * * *
13352963 GCCGATCCCCGGCTTACGCATTCTCCTTCTTCGGTCAACCTCTCCGGCCGGTTGAGTGGCCGTAC
1 -TCGATCCCCGGCTTGCGCA---T-C--C-T--G----CCTCTCCGGTCGGCTAAGCGCCCGCAA
** ** * * * *
13353028 GCTTGTTTTGTGGGTTGACTTAGGCATACAGGGTTCATCCCCAGTCTAAGCATATGAAGTTCATT
52 GCTCATTTCATGGGTTGACCTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGCTCATT
* * * * * * * * * *
13353093 CCCAGTTTAAGATCAAACTGGATC-GAGGGTTACAGTAGCAGGATCGACAGCACGCAGAGCGGAC
117 CCCAGTCTAAGATCAGA-TCGAACTGAGGGTTACGGCAACAGGATCGACAGCATGCAGGGGGGAC
*
13353157 CGGG
181 CGGA
* * * * ** * * * * * * *
13353161 CCAATCCCCAGCTTGCTCATTTTGCCTCTCCGATCGACTAAGCGCCCGTACGCCCGTTTCGTGGG
1 TCGATCCCCGGCTTGCGCATCCTGCCTCTCCGGTCGGCTAAGCGCCCGCAAGCTCATTTCATGGG
* * ** * *
13353226 TTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAG
66 TTGACCTAGGCATACAGAGTTCATCCCCAGTCTAAG
13353262 GCCCAACCGG
Statistics
Matches: 374, Mismatches: 85, Indels: 46
0.74 0.17 0.09
Matches are distributed among these distances:
183 5 0.01
184 220 0.59
185 4 0.01
187 1 0.00
188 1 0.00
190 2 0.01
191 1 0.00
193 1 0.00
194 1 0.00
196 2 0.01
197 128 0.34
198 8 0.02
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (184 bp):
TCGATCCCCGGCTTGCGCATCCTGCCTCTCCGGTCGGCTAAGCGCCCGCAAGCTCATTTCATGGG
TTGACCTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGCTCATTCCCAGTCTAAGATC
AGATCGAACTGAGGGTTACGGCAACAGGATCGACAGCATGCAGGGGGGACCGGA
Found at i:13353342 original size:26 final size:26
Alignment explanation
Indices: 13353313--13353365 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13353303 GTTGACTTAG
13353313 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
13353339 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13353365 G
1 G
13353366 ATCTAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13353490 original size:262 final size:262
Alignment explanation
Indices: 13353006--13353528 Score: 694
Period size: 262 Copynumber: 2.0 Consensus size: 262
13352996 GTCAACCTCT
* * * *
13353006 CCGGCCGGTTGAGTGGCCGTACGCTTGTTTTGTGGGTTGACTTAGGCATACAGGGTTCATCCCCA
1 CCGGCCGGCTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGGGTTCATCCCCA
* * *
13353071 GTCTAAGCATATGAAGTTCATTCCCAGTTTAAGATCAAACTGGATCGAGGGTTACAGTAGCAGGA
66 GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTACAGTAGCAGGA
* * * * *
13353136 TCGACAGCACGCAGAGCGGACCGGGCCAATCCCCAGCTTGCTCATTTTGCCTCTCCGATCGACTA
131 TCGACAGCACGCAGAGCGGACCGAGCCAATCCCCAGCTTGCGCATTCTACCTCTCAGATCGACTA
* * * * *
13353201 AGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGGCCC
196 AGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCAAGTCTAAGCCCC
13353266 AA
261 AA
* *
13353268 CCGGTCGGCTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GGAGTTCATCCCT
1 CCGGCCGGCTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGG-GTTCATCCCC
* * * *
13353332 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCTAACCGGA-CTGAGGGTTGC-GATAGTA
65 AGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGATC-GAGGGTTACAG-TAGCA
* * * ** * * *
13353395 GGATCGATAGCACGCAGGGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTATCTCTCTAGCT-G
128 GGATCGACAGCACGCAGAGCGGACCGAGCCAATCCCCAGCTTGCGCATTCTACCTCTC-AGATCG
*
13353459 ACTAAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAG
192 ACTAAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCAAGTCTAAG
13353524 CCCCA
257 CCCCA
13353529 GCCAGACCGA
Statistics
Matches: 225, Mismatches: 32, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
261 4 0.02
262 219 0.97
263 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.25
Consensus pattern (262 bp):
CCGGCCGGCTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGGGTTCATCCCCA
GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTACAGTAGCAGGA
TCGACAGCACGCAGAGCGGACCGAGCCAATCCCCAGCTTGCGCATTCTACCTCTCAGATCGACTA
AGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCAAGTCTAAGCCCC
AA
Found at i:13353629 original size:158 final size:158
Alignment explanation
Indices: 13353414--13353831 Score: 453
Period size: 158 Copynumber: 2.6 Consensus size: 158
13353404 GCACGCAGGG
* * * * * *
13353414 GGGACCGAGCTGATCCCCGGCTTGCGCATTCTATCTCT-CTAGCTGACTAAGCACCCGCACGCCC
1 GGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGA-C-CACTAAGCGCCCGCACGCCC
*
13353478 GTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
64 GTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGGT
* * * *
13353543 TGTGGTAACGGGACCGACAGCACGCAGAAA
129 TGTGGCAACGAGACCGACAACACACAGAAA
*
13353573 GGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCACTGAGCGCCCGCACGCCCGT
1 GGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCACTAAGCGCCCGCACGCCCGT
* * * ** **
13353638 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCTAGCTGGATTGAAGGTTG
66 TTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTG
* ** **
13353703 TGGCAGCGAGACCGGGAACACACAGAGG
131 TGGCAACGAGACCGACAACACACAGAAA
* * * * ** * * *
13353731 GGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGGTCAGCTCAA-CGTCCGAACGCTC
1 GGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCA-CT-AAGCGCCCGCACGCCC
* ** *
13353795 ATTTCATGGGTTAACTTAGGCATACGGAGTTCATTCC
64 GTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCC
13353832 CAGTCCAAGA
Statistics
Matches: 218, Mismatches: 38, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
158 134 0.61
159 81 0.37
160 3 0.01
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.22
Consensus pattern (158 bp):
GGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCACTAAGCGCCCGCACGCCCGT
TTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTG
TGGCAACGAGACCGACAACACACAGAAA
Found at i:13354001 original size:26 final size:26
Alignment explanation
Indices: 13353972--13354024 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
13353962 GTTGGATTAG
13353972 GCATACAG-AGTTCATT-CCATGTCTAA
1 GCATA-AGAAGTTCATTCCCA-GTCTAA
*
13353998 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
13354024 G
1 G
13354025 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTAA
Found at i:13354212 original size:26 final size:26
Alignment explanation
Indices: 13354182--13354234 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13354172 GTTGAGTTAG
13354182 GCATACGAAGTTCA-TCGCTAGTCTAA
1 GCATACGAAGTTCATTC-CTAGTCTAA
13354208 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
13354234 G
1 G
13354235 ATCTAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:13354544 original size:26 final size:26
Alignment explanation
Indices: 13354514--13354566 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13354504 GTTATCTTAG
13354514 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13354540 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13354566 G
1 G
13354567 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13355261 original size:26 final size:26
Alignment explanation
Indices: 13355211--13355263 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13355201 GTTGACTTGG
* *
13355211 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
13355237 GCATACAGAGTTCATTCCC-AATCTAA
1 GCATACAGAGTTCA-TCCCTAATCTAA
13355263 G
1 G
13355264 ATCGAAATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:13355786 original size:26 final size:25
Alignment explanation
Indices: 13355751--13355801 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 25
13355741 GTTGGCTTAG
13355751 GCATAGGAGTTCATTCCATGTCTAA
1 GCATAGGAGTTCATTCCATGTCTAA
13355776 GCATACGGAGTTCATTCCATGTCTAA
1 GCATA-GGAGTTCATTCCATGTCTAA
13355802 AAGTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (25 bp):
GCATAGGAGTTCATTCCATGTCTAA
Found at i:13356511 original size:26 final size:26
Alignment explanation
Indices: 13356481--13356539 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
13356471 GTTGACTTAG
*
13356481 GCATACAGATTTCA-TCCCAAGTCTAA
1 GCATACAGAGTTCATTCCCAA-TCTAA
*
13356507 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
13356533 -CAT-CAGA
1 GCATACAGA
13356540 CCGGACCAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 17 0.59
27 6 0.21
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:13356803 original size:158 final size:158
Alignment explanation
Indices: 13356507--13357160 Score: 557
Period size: 158 Copynumber: 4.2 Consensus size: 158
13356497 CCAAGTCTAA
* * * * ** *
13356507 GCATACGGAGTTCATTCCCA-ATCTAACATCAGACCGGACCAAGGGTTGCGGTAGCAGGATCGGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGGC
** * *
13356571 AGCACGCAGGGGGGA-TGGGCCGATCCCC-GACTTGCGCATTTTGCCTCTCCAACCGACTGAGCA
65 AGCACGCAGGGGGGACCAGGCCGATCCCCAG-CTTGCGCATTCTGCCTCTCCGACCGACTGAGCA
*
13356634 TCCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
* * * **
13356664 CCATAGGGAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTGTGACAGTTGGATCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGGCA
* * ** *
13356729 GCATGCAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGTCGACTGAGCGCC
66 GCACGCAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACC
* *
13356794 CGCACGCCCGTTTCGTGGGTTGGTTTAG
131 CGCACGCCCGTTTCATGGGTTGGCTTAG
* * ** * ** * *
13356822 GCATAGGGAGTTCATTCCATGTTTAAGCCCCAG-TCGGACCGAGGGTTGTGGTAGCGGGATAGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGGC
* * * * * * *
13356886 AGCATGCAGAGGGGGACCAGACCGAT-CCGAGGCTTGTGCATTATGCCTCTCCGACCGGCTCAGT
65 AGCACGCAG-GGGGGACCAGGCCGATCCCCA-GCTTGCGCATTCTGCCTCTCCGACCGACT--GA
* *
13356950 GC-CCCGCACGCTCGGTT--TGTGGTTGGACTTAG
126 GCACCCGCACGCCCGTTTCATG-GGTTGG-CTTAG
** * * * *
13356982 TTTATACGG-TTTC-TCCCA-GTCTAAGATCAGACAGGACC-A--GTCTGT-ACAGCAGGATCGA
1 -GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGT-TGTGACAGCAGGATCGG
* * * * * *
13357040 C-GCACGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCAACTGACCA
64 CAGCACGCAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCA
* * * * **
13357104 TCCGTACGCTCGTTTCATGGATTACCTTAG
129 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
13357134 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13357161 CCCTAGCCGG
Statistics
Matches: 392, Mismatches: 85, Indels: 43
0.75 0.16 0.08
Matches are distributed among these distances:
151 8 0.02
152 20 0.05
153 45 0.11
154 17 0.04
155 11 0.03
156 6 0.02
157 66 0.17
158 139 0.35
159 52 0.13
160 20 0.05
161 8 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGGCA
GCACGCAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACC
CGCACGCCCGTTTCATGGGTTGGCTTAG
Found at i:13357715 original size:158 final size:158
Alignment explanation
Indices: 13357331--13357726 Score: 363
Period size: 158 Copynumber: 2.5 Consensus size: 158
13357321 CCCAATCTAA
* * * * * *
13357331 GCATACGGAGTTCATTCCCAGTTTAAGATCAGACTAGACTGAGGGTTACGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-GGACTGAGGGTTGCGGCAGCAGGAACGACA
* * * * *
13357396 GCACGTAG-GGGGGACCGACCCAATCCCCGACTTTCGCATTCTACCTCTCCGGCCAGCTGAACGC
65 GCACGCAGAGGGGGACCGACCCAATCCCCGACTTGCGCATTATACCTCTCCGACCAGCTCAACGC
* * *
13357460 CTGCACGCCCTTTTTATGGGTTGGCTTAG
130 CTGCACGCCCATTTCATGGGTTGACTTAG
* * * * * * * *
13357489 GCATAAGGAGTTCATT-CCATGTCTAAGACCCAGGA-GGACCGAGGGTTGTGGCAACGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGA-TC-GGACGGACTGAGGGTTGCGGCAGCAGGAACGA
* * ** * * ** * *
13357552 TAGCACGCAGAGGGGGACTGGGCCGATCCCC-AGCTTGCGCATTATGCCTCTTTGACCGGCTCAG
63 CAGCACGCAGAGGGGGACCGACCCAATCCCCGA-CTTGCGCATTATACCTCTCCGACCAGCTCAA
* * * *
13357616 CGGC-GCACGCTCATTTCGTGGGTTGACTTAT
127 CGCCTGCACGCCCATTTCATGGGTTGACTTAG
13357647 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGAACGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACTGAGGGTTGCGGCAGCAGGAACGACA
13357712 GCACGCA-AGGTGGGA
65 GCACGCAGAGG-GGGA
13357727 TCGGCCTCTC
Statistics
Matches: 185, Mismatches: 44, Indels: 18
0.75 0.18 0.07
Matches are distributed among these distances:
156 3 0.02
157 7 0.04
158 128 0.69
159 45 0.24
160 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACGGACTGAGGGTTGCGGCAGCAGGAACGACAG
CACGCAGAGGGGGACCGACCCAATCCCCGACTTGCGCATTATACCTCTCCGACCAGCTCAACGCC
TGCACGCCCATTTCATGGGTTGACTTAG
Found at i:13358541 original size:26 final size:26
Alignment explanation
Indices: 13358505--13358557 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13358495 GTTGACTTAG
13358505 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
13358531 GCATACTGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13358557 G
1 G
13358558 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13359077 original size:26 final size:26
Alignment explanation
Indices: 13359029--13359081 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13359019 GTTGACTTAG
*
13359029 GCATACAGAGCTCATCCATAGTCTAA
1 GCATACAGAGCTCATCCACAGTCTAA
*
13359055 GCATACAGAGTTCATTCC-CAGTCTAA
1 GCATACAGAGCTCA-TCCACAGTCTAA
13359081 G
1 G
13359082 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATCCACAGTCTAA
Found at i:13359439 original size:159 final size:158
Alignment explanation
Indices: 13359055--13359439 Score: 368
Period size: 159 Copynumber: 2.4 Consensus size: 158
13359045 CATAGTCTAA
* * * * *
13359055 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTACGGTAGAAGGATCGACA
1 GCATAAAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATCGACA
** * * * *
13359120 GCATACAGGGGGGACCAAGTTGATCCCTGTCTCACACATTTTGCCTCTCCGGCCAGCTGAGCGCC
66 GCATACAGGGGGGACCAAGTCAATCCCTGACTCACACATTATGCCTCTCCAGCCAGCTCAGCGCC
**
13359185 CGCACACCAGTTTTGTGGGTTGGCTTAG
131 CGCACACCAGTTTCATGGGTTGGCTTAG
** * ** * ** * *
13359213 GCATAGGGAGTTCATT-CCATGTCTATGCCCAAACCGGATCGAGGGTTGTGGCAGCGGGA-CTAG
1 GCATAAAGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATCGA-
** **** **
13359276 CAGCATACAGAGGGGGACCGGGTCAATCTCC-GACTTGTGCATTATGCCTCTCCAGCTGGCTCAG
64 CAGCATACAG-GGGGGACCAAGTCAATC-CCTGACTCACACATTATGCCTCTCCAGCCAGCTCAG
* *
13359340 CGCCCGTACGCTC-GTTTCATGGG-TGGACTTAG
127 CGCCCGCACAC-CAGTTTCATGGGTTGG-CTTAG
13359372 GCATAAAGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CTGAGGGTTACGGCAGCAGGATCGAC
1 GCATAAAGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTACGGCAGCAGGATCGAC
13359436 AGCA
65 AGCA
13359440 CGTAGGGGGG
Statistics
Matches: 176, Mismatches: 42, Indels: 17
0.75 0.18 0.07
Matches are distributed among these distances:
157 5 0.03
158 56 0.32
159 107 0.61
160 8 0.05
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATAAAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATCGACA
GCATACAGGGGGGACCAAGTCAATCCCTGACTCACACATTATGCCTCTCCAGCCAGCTCAGCGCC
CGCACACCAGTTTCATGGGTTGGCTTAG
Found at i:13359581 original size:26 final size:26
Alignment explanation
Indices: 13359531--13359583 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13359521 GTTGGCTTCG
**
13359531 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13359557 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13359583 G
1 G
13359584 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13360147 original size:157 final size:157
Alignment explanation
Indices: 13359861--13360240 Score: 447
Period size: 157 Copynumber: 2.4 Consensus size: 157
13359851 CTCCGATCGG
* * * * * * *
13359861 CCTCTCCGGCCGGCTGAGCACCCGCACACTCGTTTCGTGGGTAGACTTAGGCATACGAAGTTCAT
1 CCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
13359926 TTCCAGTCTAAGATAGGGCTAGACTGAGGGTTGCGGTAGCAGGATCAACAACACGTAGGAGGATC
66 TCCCAGTCTAAGATAGAGCTAGACCGAGGGTTGCGGCAGCAGGATCAACAACACATAGGAGGATC
* *
13359991 AGGCCGATCCCCGGCTTGCGCATTATG
131 AGGCCGATCCCCGGCTTACGCATTATA
** *
13360018 CCTCTCCGACCGGCTCAGCGCTTGCACGCTTATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * * *
13360083 TCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGTGGCAGCAGGATCTACAGCACATGGGGGGAT
66 TCCCAGTCTAAGAT-AGAGCTAGACCGAGGGTTGCGGCAGCAGGATCAACAACACATAGGAGGAT
* * *
13360147 CGGGCCGATCCCTGGCTTACGCATTCTA
130 CAGGCCGATCCCCGGCTTACGCATTATA
* ** * * *
13360175 TCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
13360240 T
66 T
13360241 TCATGTCAAA
Statistics
Matches: 186, Mismatches: 36, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
157 183 0.98
158 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
CCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATAGAGCTAGACCGAGGGTTGCGGCAGCAGGATCAACAACACATAGGAGGATC
AGGCCGATCCCCGGCTTACGCATTATA
Found at i:13360412 original size:185 final size:183
Alignment explanation
Indices: 13360068--13360437 Score: 474
Period size: 185 Copynumber: 2.0 Consensus size: 183
13360058 GTTGACTTAG
* * * *
13360068 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCTACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGAACCGAGGGTTGCGGCAGCAGGATCGACA
** ** * * *
13360133 GCACATGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTATCTCTCCGGTCGGCTGAGCGCCC
66 GCACAACGGGGGATCGGGCCGATCCCTAACTTACGCATTCTACCTCTCCGCTCGACTGAGCGCCC
* *
13360198 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCAAA
131 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAA
* * *
13360251 GCATACGGAGTTCATTCCCAATCTAAGATCGGA-CTGAACTGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGATC-GAACCGAGGGTTGCGGCAGCAGGATCGAC
* * ** *
13360315 AGCACGCAACGGTGGATCGGGCCGATCTCTAACTTGTGCATTCTGCCTCTCCAGCT-GACTGAGC
65 AGCA--CAACGGGGGATCGGGCCGATCCCTAACTTACGCATTCTACCTCTCC-GCTCGACTGAGC
* * *
13360379 GCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAA
127 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAA
13360436 GC
1 GC
13360438 CCCAGTTGAA
Statistics
Matches: 159, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
182 1 0.01
183 59 0.37
185 97 0.61
186 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGAACCGAGGGTTGCGGCAGCAGGATCGACA
GCACAACGGGGGATCGGGCCGATCCCTAACTTACGCATTCTACCTCTCCGCTCGACTGAGCGCCC
GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAA
Found at i:13360538 original size:683 final size:688
Alignment explanation
Indices: 13359309--13360620 Score: 1604
Period size: 683 Copynumber: 1.9 Consensus size: 688
13359299 CAATCTCCGA
* * * *
13359309 CTTGTGCATTATGCCTCTCCAGCTGGCTCAGCGCCCGTACGCTCGTTTCATGGGTGGACTTAGGC
1 CTTGCGCATTATGCCTCTCCAGCCGGCTCAGCGCCCGCACGCTCATTTCATGGGTGGACTTAGGC
*
13359374 ATAAAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGACAGC
66 ATAAAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGC
* * * *
13359439 ACGTAGGGGGGGAACTGGCTGAGCCCCGACTTACACATTCTGCCTCTCCGATCGGTTGAGCGCCC
131 ACG-AGGGGGGGAACGGGCCGAGCCCCGACTTACACATTCTACCTCTCCGATCGGCTGAGCGCCC
* * * *
13359504 GCATGCTCGTTTGATGGGTTGGCTTCGGCATACGGAGTTCATTCCCTGTCTAAGCATACGGAGTT
195 GCACGCTCGTTTGATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAAGCATACGGAGTT
* * **
13359569 CATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGTGATAATAGGACCAAGACCACGATCGGTA
260 CATTCCCAATCTAAGATCAGACCGAATCGAGGGTTGCG--AATAGGA-CAAG----CGATCGACA
* * * * * *
13359634 GCACGCAGGGGGGGTCGAGCCGATCCCCAGCTTGCACATTTTGCCTCTCCGGCCAGCTGAGCTCC
318 GCACGCACGGGGGATCGAGCCGATCCCCAACTTGCACATTCTGCCTCTCCAGCCAGCTGAGCGCC
*
13359699 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCAATGTCTAAGCCCCAACCAG
383 CGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCAATGTCTAAGCCCCAACCAG
* * * *
13359764 ACTGAGGGCTATGGCAGCAGGACCGGCAGTGGGATCGGCACCACGCAGAGGGGGATCGGGCTGAT
448 ACCGAGGGCTATGGCAGCAGGACCGGCAGTAGGATCGGCACCACGCAGAGAGGGATAGGGCTGAT
* * * * * *
13359829 CCCCGACTTGCGCATTATGCCTCTCCGATCGGCCTCTCCGGCCGGCTGAGCACCCGCACACTCGT
513 CCCCGACTTGCACAATATGCCTCTCCGATCGGACTCTCCGACCGACTGAGCACCCACACACTCGT
**
13359894 TTCGTGGGTAGACTTAGGCATAC-GAAGTTCATTTCCAGTCTAAGATAGGGCTAGACTGAGGGTT
578 TTCGTGGGTAGACTTAGGCATACAG-AGTTCATCCCCAGTCTAAGATAGGGCTAGACTGAGGGTT
13359958 GCGGTAGCAGGATCAACAACACGTAGGAGGATCAGGCCGATCCCCGG
642 GCGGTAGCAGGATCAACAACACGTAGGAGGATCAGGCCGATCCCCGG
** * * *
13360005 CTTGCGCATTATGCCTCTCC-GACCGGCTCAGCGCTTGCACGCTTATTTCGTGGGTTGACTTAGG
1 CTTGCGCATTATGCCTCTCCAG-CCGGCTCAGCGCCCGCACGCTCATTTCATGGGTGGACTTAGG
** * ** *
13360069 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCTACAG
65 CATAAAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAG
* * * * * * * *
13360134 CAC-ATGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTATCTCTCCGGTCGGCTGAGCGCCC
130 CACGAGGGGGGGAACGGGCCGAGCCCCGACTTACACATTCTACCTCTCCGATCGGCTGAGCGCCC
*
13360198 GCACGCTCGTTTCG-TGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCAAAGCATACGGAGT
195 GCACGCTCGTTT-GATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAAGCATACGGAGT
* * *
13360262 TCATTCCCAATCTAAGATCGGACTGAA-CTGAGGGTTGCG-GTA-G-C-AG-GATCGACAGCACG
259 TCATTCCCAATCTAAGATCAGACCGAATC-GAGGGTTGCGAATAGGACAAGCGATCGACAGCACG
* * * * ** * *
13360321 CAACGGTGGATCGGGCCGATCTCTAACTTGTGCATTCTGCCTCTCCAG-CTGACTGAGCGCCCGT
323 C-ACGGGGGATCGAGCCGATCCCCAACTTGCACATTCTGCCTCTCCAGCCAG-CTGAGCGCCCGC
* * * * ***
13360385 ACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCCCC-AGTTGAAC
386 ACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCAATGTCTAAGCCCCAACCAG-AC
* * * **
13360449 CGAGGGTTATGGCAGCAGGACTGGTAGTAGGATCGGCGTCACGCAGAGAGGGATAGGGCTGATCC
450 CGAGGGCTATGGCAGCAGGACCGGCAGTAGGATCGGCACCACGCAGAGAGGGATAGGGCTGATCC
* ** * * * * *
13360514 TCGGGTTGCACAATATGCCTCTCCGGTCGGACTCTCTGACTGACTGAGCATCCACACATTCGTTT
515 CCGACTTGCACAATATGCCTCTCCGATCGGACTCTCCGACCGACTGAGCACCCACACACTCGTTT
* *
13360579 CGTGGGTTGATTTAGGCATACAGAGTTCATCCCCAGTCTAAG
580 CGTGGGTAGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
13360621 CATATAGAGT
Statistics
Matches: 520, Mismatches: 89, Indels: 27
0.82 0.14 0.04
Matches are distributed among these distances:
682 16 0.03
683 241 0.46
684 1 0.00
687 2 0.00
688 1 0.00
690 1 0.00
691 2 0.00
693 1 0.00
694 139 0.27
695 2 0.00
696 114 0.22
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (688 bp):
CTTGCGCATTATGCCTCTCCAGCCGGCTCAGCGCCCGCACGCTCATTTCATGGGTGGACTTAGGC
ATAAAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGC
ACGAGGGGGGGAACGGGCCGAGCCCCGACTTACACATTCTACCTCTCCGATCGGCTGAGCGCCCG
CACGCTCGTTTGATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAAGCATACGGAGTTC
ATTCCCAATCTAAGATCAGACCGAATCGAGGGTTGCGAATAGGACAAGCGATCGACAGCACGCAC
GGGGGATCGAGCCGATCCCCAACTTGCACATTCTGCCTCTCCAGCCAGCTGAGCGCCCGCACGCT
CATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCAATGTCTAAGCCCCAACCAGACCGAGGG
CTATGGCAGCAGGACCGGCAGTAGGATCGGCACCACGCAGAGAGGGATAGGGCTGATCCCCGACT
TGCACAATATGCCTCTCCGATCGGACTCTCCGACCGACTGAGCACCCACACACTCGTTTCGTGGG
TAGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGATAGGGCTAGACTGAGGGTTGCGGTAGCA
GGATCAACAACACGTAGGAGGATCAGGCCGATCCCCGG
Found at i:13360630 original size:26 final size:26
Alignment explanation
Indices: 13360594--13360646 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13360584 GTTGATTTAG
13360594 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13360620 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13360646 G
1 G
13360647 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13361074 original size:157 final size:157
Alignment explanation
Indices: 13360627--13361120 Score: 494
Period size: 158 Copynumber: 3.1 Consensus size: 157
13360617 TAAGCATATA
* * * * * * * *
13360627 GAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGTAGGATTGACAGCACGCA
1 GAGTTCATTCTCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCA
* **
13360692 GGGGGGATCGAGCCGAT-CCTCGGCTCACGCATTCTGCCTCTCCGGCC-AGCTGAGCGCCCGCAC
66 GGGGGGATCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCC-GCCGA-CTGAGCGCCCGCAC
* * * *
13360755 GCCCGTTTCGTGTGTTGGCTTAGGCATAGG
128 GCTCGTTTCATGGGTTGGCTTAGGCATACG
** * * * * * ** *
13360785 GAGTTCATTCT-ATGTCTAAGCCCCGGTCGGACAGAGGATTGTGGCAGCGAGATCGGTAGCATGC
1 GAGTTCATTCTCA-GTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGC
* * * * ** * * ** * *
13360849 AGAGGGGGATCGGGCTGATCCCCGGCTTGCACATTATGCCTCTTTGGCCGGCTCAGCATCGGCGC
65 AG-GGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTC-TCCGCCGACTGAGCGCCCGCAC
* *
13360914 GCTCGTTTTATGGGTTGGCTTATGCATACG
128 GCTCGTTTCATGGGTTGGCTTAGGCATACG
*
13360944 GAGTTCATTCTCAGTC-AAAATCAGATCGGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCA
1 GAGTTCATTCTCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCA
* * *
13361008 GGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTTCCTCTCCGATCGACTGAGCGCCCACACGC
66 GGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCG-CCGACTGAGCGCCCGCACGC
13361073 TCGTTTCATGGGTTGGCTTAGGCATACG
130 TCGTTTCATGGGTTGGCTTAGGCATACG
13361101 GAGTTCATTC-CATGTCTAAG
1 GAGTTCATTCTCA-GTCTAAG
13361121 CACACAGAGT
Statistics
Matches: 260, Mismatches: 67, Indels: 18
0.75 0.19 0.05
Matches are distributed among these distances:
156 4 0.02
157 86 0.33
158 87 0.33
159 79 0.30
160 4 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
GAGTTCATTCTCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCA
GGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGCCGACTGAGCGCCCGCACGCT
CGTTTCATGGGTTGGCTTAGGCATACG
Found at i:13362223 original size:159 final size:157
Alignment explanation
Indices: 13361846--13362231 Score: 387
Period size: 159 Copynumber: 2.4 Consensus size: 157
13361836 TAAGCATAGA
* ** * ** **
13361846 GAGTGCATTCCCAGTCTGGGATCAGACTGAAATGAGGGTTGCAACAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGAC-GGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCA
* **** * * ** *
13361911 AGGGTGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGC
65 AGGGGGACCAAACCGATCCCCAGCTTGCGCATTATACCTCTCCGACCGGCTCAGCGCCCGCACGC
* ** *
13361976 CCGTTTCGTGGGTTGGTTTAGGCATAGG
130 CCGTTTCATGGGTTGACTTAGGCATACG
* ** * ** * * *
13362004 GAGTTCATT-CCATGTTTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGGGATAGGCAGCACGC
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACGGACCGAGGGTTGTGACAGCAGGATCGACAGCACGC
* * *
13362068 AGAGGGGGACCAAACCGATCCTCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGTGCCCGCAC
64 A-AGGGGGACCAAACCGATCCCCAGCTTGCGCATTATACCTCTCCGACCGGCTCAGCGCCCGCAC
* * *
13362133 GCTCGTTTTATGGGTTGACTTAGTCATACG
128 GCCCGTTTCATGGGTTGACTTAGGCATACG
13362163 GAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGAC-GGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCA
13362228 AGGG
65 AGGG
13362232 AGTTCATTCC
Statistics
Matches: 177, Mismatches: 46, Indels: 10
0.76 0.20 0.04
Matches are distributed among these distances:
157 3 0.02
158 47 0.27
159 124 0.70
160 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.21
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAGATCAGACGGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAA
GGGGGACCAAACCGATCCCCAGCTTGCGCATTATACCTCTCCGACCGGCTCAGCGCCCGCACGCC
CGTTTCATGGGTTGACTTAGGCATACG
Found at i:13362577 original size:26 final size:26
Alignment explanation
Indices: 13362540--13362605 Score: 114
Period size: 26 Copynumber: 2.5 Consensus size: 26
13362530 GTTGGCTTAG
*
13362540 GCATACGAAGTTCATTCCATGTCTAC
1 GCATACGGAGTTCATTCCATGTCTAC
13362566 GCATACGGAGTTCATTCCATGTCTAC
1 GCATACGGAGTTCATTCCATGTCTAC
*
13362592 ACATACGGAGTTCA
1 GCATACGGAGTTCA
13362606 CTCCTAGTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAC
Found at i:13363324 original size:26 final size:26
Alignment explanation
Indices: 13363290--13363340 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13363280 TGACTTAGGC
*
13363290 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACAGAGTTCATCCCCAGTCTAAGT
*
13363316 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
13363341 ATCTGACTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGT
Found at i:13363793 original size:158 final size:156
Alignment explanation
Indices: 13363316--13363799 Score: 438
Period size: 159 Copynumber: 3.1 Consensus size: 156
13363306 CAGTCTAAGT
* * * *
13363316 ATACAGAGTTCATTCCCAGTCTAAGATCTG-ACTAGATCGAAGGTTGCGACAGCAGGATCGACAG
1 ATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGAT-GAGGGTTGCGGCAGCAGGATCGACAG
* * * * * * * * * *
13363380 CACGTA-AGGGGATCAGGTCGATCCCCGGCTTGCACATTCTGCTTGTCTAGCCGGTTGAGCCCCC
64 CACGTAGGGGGGATCGGGCCGATTCCCGACTTGCACATTCTGCCTCTCGA-TCGGTTGAGCGCCC
*
13363444 ACACGCCCATTTCATGGGTTGGCTTAGGC
128 ACACGCTCATTTCATGGGTTGGCTTAGGC
* * ** * * * * *
13363473 ATAGGGAGGTCATT-CCATGTCTAAGCCCCAGCCGGATTGAGGGTTGTGGCAGC-GAGACCGACA
1 ATACGGAGTTCATTCCCA-GTCTAAGATCGAACCAGA-TGAGGGTTGCGGCAGCAG-GATCGACA
* * * * * * * ** * *
13363536 GCACGCAGAGGGGGATCGGGCC-AATCCCCAGCTTGCTCATTATGCGTCTTCGGTCGCCTCAGTG
63 GCACGTAG-GGGGGATCGGGCCGATTCCCGA-CTTGCACATTCTGCCTC-TCGATCGGTTGAGCG
* *
13363600 CCCACATGCTCATTTCAGGGGTTGGCTTAGGC
125 CCCACACGCTCATTTCATGGGTTGGCTTAGGC
* *
13363632 ATACGGAGTTCATTCCCAATCTAAGATCGAACCAGACTGAGGGTTGCGGTAGCAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGA-TGAGGGTTGCGGCAGCAGGATCGACAGC
* * *
13363697 ACGTAGGGGGGATCGGGCCGATTCCCGATTTACACATTCTGCCTCTCCGATCGGTTGAGCGCCCG
65 ACGTAGGGGGGATCGGGCCGATTCCCGACTTGCACATTCTGCCTCT-CGATCGGTTGAGCGCCCA
* *
13363762 CACGCTCGTTTCATGGGTTGGCTTAGTC
129 CACGCTCATTTCATGGGTTGGCTTAGGC
13363790 ATACGGAGTT
1 ATACGGAGTT
13363800 TATGCCATGT
Statistics
Matches: 249, Mismatches: 66, Indels: 23
0.74 0.20 0.07
Matches are distributed among these distances:
156 4 0.02
157 48 0.19
158 76 0.31
159 115 0.46
160 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (156 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATGAGGGTTGCGGCAGCAGGATCGACAGCA
CGTAGGGGGGATCGGGCCGATTCCCGACTTGCACATTCTGCCTCTCGATCGGTTGAGCGCCCACA
CGCTCATTTCATGGGTTGGCTTAGGC
Found at i:13363837 original size:26 final size:26
Alignment explanation
Indices: 13363789--13363840 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13363779 TTGGCTTAGT
* *
13363789 CATACGGAGTTTATGCCATGTCTAAG
1 CATACGGAGTTCATCCCATGTCTAAG
13363815 CATACGGAGTTCATTCCCA-GTCTAAG
1 CATACGGAGTTCA-TCCCATGTCTAAG
13363841 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATCCCATGTCTAAG
Found at i:13364028 original size:26 final size:26
Alignment explanation
Indices: 13363998--13364050 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13363988 GTTGACTTAG
*
13363998 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
*
13364024 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
13364050 G
1 G
13364051 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:13364318 original size:159 final size:159
Alignment explanation
Indices: 13364150--13364685 Score: 556
Period size: 159 Copynumber: 3.4 Consensus size: 159
13364140 CCAACTGAAC
* * *
13364150 GCCCGCACGCCCGTTTCGTGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
1 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * *
13364215 CAGACCAAGGGTTGTGGCAGAAGGACCGGCAGCACGTAGAAGGGGATCGGGCCGATCCCTGGCTT
66 CAGACCGAGGGTTGTGGCAGAAGGACCGACAGCACGTAGAAGGGGACCGGGCCGATCCCCGGCTT
13364280 GTGCATTATGCCTCTCCGGCCGGCTGAGT
131 GTGCATTATGCCTCTCCGGCCGGCTGAGT
** * * ** * *
13364309 GATCACACGCCCGTTCCATAAGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGC
1 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
* ** * * * *
13364374 CGGACCGAGGGTTGTGGCAGCGGGACTGACAGCACGTAGAGGGGGACCGGCCCGATCCCCAGCTT
66 CAGACCGAGGGTTGTGGCAGAAGGACCGACAGCACGTAGAAGGGGACCGGGCCGATCCCCGGCTT
* * * * **
13364439 GCGCATTATGCCTCTACGACCGGCTCAAC
131 GTGCATTATGCCTCTCCGGCCGGCTGAGT
* * * * * ** *
13364468 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCGG
1 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG
* ** ** * * * * * *
13364531 ACCAAATTGAGGGTTACGACA-ATAGGATCGACAGCACGCAGACGGGCACCGGGCCGATCCCCGA
65 -CCAGACCGAGGGTTGTGGCAGA-AGGACCGACAGCACGTAGAAGGGGACCGGGCCGATCCCCGG
* *
13364595 CTTGTGCATTCTGCCTCTCCGGCCGACTGAGT
128 CTTGTGCATTATGCCTCTCCGGCCGGCTGAGT
* * *
13364627 GCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGC
1 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13364686 ATACGGGGTT
Statistics
Matches: 299, Mismatches: 73, Indels: 9
0.78 0.19 0.02
Matches are distributed among these distances:
158 5 0.02
159 291 0.97
160 3 0.01
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (159 bp):
GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
CAGACCGAGGGTTGTGGCAGAAGGACCGACAGCACGTAGAAGGGGACCGGGCCGATCCCCGGCTT
GTGCATTATGCCTCTCCGGCCGGCTGAGT
Found at i:13365075 original size:26 final size:26
Alignment explanation
Indices: 13365039--13365091 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13365029 GTTGACTTAG
*
13365039 GCATACGGAGTTCCTCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13365065 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13365091 G
1 G
13365092 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13365581 original size:26 final size:26
Alignment explanation
Indices: 13365543--13365592 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
13365533 TGGCTTAGGC
*
13365543 ATACGGAGGTCATTCC-ATGTCTAAGT
1 ATACAGAGGTCATTCCTA-GTCTAAGT
*
13365569 ATACAGAGTTCATTCCTAGTCTAA
1 ATACAGAGGTCATTCCTAGTCTAA
13365593 CATCAGACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (26 bp):
ATACAGAGGTCATTCCTAGTCTAAGT
Found at i:13366076 original size:26 final size:26
Alignment explanation
Indices: 13366037--13366092 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
13366027 TGGGTTGGCT
* *
13366037 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCAGACAGAGTTCATTCCCA-GTC
13366063 TAAGCAGACAGAGTTCATTCCCAGTC
1 TAAGCAGACAGAGTTCATTCCCAGTC
13366089 TAAG
1 TAAG
13366093 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCAGACAGAGTTCATTCCCAGTC
Found at i:13366184 original size:499 final size:500
Alignment explanation
Indices: 13365214--13366190 Score: 1221
Period size: 499 Copynumber: 2.0 Consensus size: 500
13365204 GTTTCATTTG
* *
13365214 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGGCAGCG
1 TTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTATGGCAGCG
* * * * * *
13365279 AGACCGATAGCACGTAGAGGAGAATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTTCGATCG
66 AGACCGACAGCACGTAGAGGAGAACCGGGCCGATCCCCAGCTTACACATTATGCCTCTCCGACCG
* * * *** *
13365344 ACTCAACGCCCGCACGTTCGTTTCATGGATTGATTTATGCATATGGAGTTCATTCCCAGTCTATG
131 ACTCAACGCCCGCACGCTCGTTTCATGGATTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAG
* ** *
13365409 ATTAGACTGGACCGAGGGTTGCGACAACAAGATCGACAGCACGTAAGGGGGCACCGAGTTGATCC
196 ATCAGACTGGACCGAAAGTTGCGACAACAAGATCGACAGCACGTAAGGGGGCACCGAGTCGATCC
* * * * *
13365474 CCGGCTTACGCATTCTGCCTCTTCGGCTGGCTGAACGCCTGCATGCTCGTTTCGTGGGTTGGCTT
261 CCAGCTTACGCATTCTACCTCTCCGGCTGGCTGAACGCCTGCATACTCGTTTCATGGGTTGGCTT
* * * *
13365539 AGGCATACGGAGGTCATTCCATGTCTAAGTATACAGAGTTCATTCCTAGTCTAACATCAGACCAG
326 AAGCATACGGAGGTCATTCCATGTCTAAGCAGACAGAGTTCATTCCCAGTCTAACATCAGACCAG
* * * *
13365604 ACCGAGGGTTGCGACTGTAGGACCAGTAGCAAGATCGATAGCACTCAGGGGGGATCGGGCCGATC
391 ACCGAGGGTTACGACAGTAGGACCAGTAGCAAGATCGATAGCACTCAGGGAGGACCGGGCCGATC
* * *
13365669 CTTGAATTGTGCATTCTGGCTCTGCCCGCACGCTCGTTTCATGGC
456 CGTGAATTGCGCATTCTGCCTCTGCCCGCACGCTCGTTTCATGGC
* *
13365714 TTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTATGGCAGTG
1 TTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTATGGCAGCG
* * * * *
13365779 GGATCGACAGCACGTAGAGG-GAGACCGGGCCGATCCCTAGCTTACGCATTATGCCTCTCCGGCC
66 AGACCGACAGCACGTAGAGGAGA-ACCGGGCCGATCCCCAGCTTACACATTATGCCTCTCCGACC
* ** * *
13365843 GGCTCAGTGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAA
130 GACTCAACGCCCGCACGCTCGTTTCATGGATTGACTTAGGCATACAAAGTTCATTCCCAGTCTAA
* * * * * * * *
13365908 GATCAGA-TCGGA-CTAAAGTTGC-AGTAGCAGGATCGACAGCATG-CAGGGGTTCACCGGGTCG
195 GATCAGACT-GGACCGAAAGTTGCGA-CAACAAGATCGACAGCACGTAAGGGG-GCACCGAGTCG
* * ** * *
13365969 GTCCTCAGCTTGTGCATTCTACCTCTCC-GATCGGCTGAGCGCCTGCATACTCGTTTCATGGGTT
257 ATCCCCAGCTTACGCATTCTACCTCTCCGGCT-GGCTGAACGCCTGCATACTCGTTTCATGGGTT
* *
13366033 GGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCAGACAGAGTTCATTCCCAGTCTAAGATCAG
321 GGCTTAAGCATACGGAGGTCATTCCATGTCTAAGCAGACAGAGTTCATTCCCAGTCTAACATCAG
* * * *
13366098 ATCGGACTGAGGGTTACGACAGTAGGACCAGTAGCAAGATCGGTAGCA-TGCAGGGAGGACCGGG
386 ACCAGACCGAGGGTTACGACAGTAGGACCAGTAGCAAGATCGATAGCACT-CAGGGAGGACCGGG
* **
13366162 TCGATCCGTGGCTTGCGCATTCTGCCTCT
450 CCGATCCGTGAATTGCGCATTCTGCCTCT
13366191 CCGGCCGACT
Statistics
Matches: 401, Mismatches: 70, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
498 9 0.02
499 219 0.55
500 173 0.43
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (500 bp):
TTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTATGGCAGCG
AGACCGACAGCACGTAGAGGAGAACCGGGCCGATCCCCAGCTTACACATTATGCCTCTCCGACCG
ACTCAACGCCCGCACGCTCGTTTCATGGATTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAG
ATCAGACTGGACCGAAAGTTGCGACAACAAGATCGACAGCACGTAAGGGGGCACCGAGTCGATCC
CCAGCTTACGCATTCTACCTCTCCGGCTGGCTGAACGCCTGCATACTCGTTTCATGGGTTGGCTT
AAGCATACGGAGGTCATTCCATGTCTAAGCAGACAGAGTTCATTCCCAGTCTAACATCAGACCAG
ACCGAGGGTTACGACAGTAGGACCAGTAGCAAGATCGATAGCACTCAGGGAGGACCGGGCCGATC
CGTGAATTGCGCATTCTGCCTCTGCCCGCACGCTCGTTTCATGGC
Found at i:13366902 original size:158 final size:159
Alignment explanation
Indices: 13366594--13366946 Score: 426
Period size: 158 Copynumber: 2.2 Consensus size: 159
13366584 CATTTCATTT
* * * *
13366594 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGTCGGACCGAGGGTTGTGACAAC
* * * *
13366659 AGGACCGACAGCACGTAGAGGGGGACCAGGCCGATCCTCAGCTTGCGCATAATGCCTCTTCAGTC
66 AAGACCGACAGCACGTAGAGGGGGACCAGGCCGATCCCCAGCTTGCGCATAATGCCTCTCCAGCC
*
13366724 GGCTCAGCGCCCGCACGCTCGTTTCGTGG
131 GACTCAGCGCCCGCACGCTCGTTTCGTGG
* * * * * *
13366753 GTTGACTTATGCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGGCCGAGGTTTGTGACA
1 GTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-TCGGACCGAGGGTTGTGACA
* * ** *
13366816 ACAAGATCGACAGCACGTAG-GGGGGACCAGGCCGATCCCCGGCTTGCGCATTTTTCCTCTCC-G
64 ACAAGACCGACAGCACGTAGAGGGGGACCAGGCCGATCCCCAGCTTGCGCATAATGCCTCTCCAG
* * *
13366879 ACCGATTGAGCGCCCGCATGCTCGTTTCGTGG
129 -CCGACTCAGCGCCCGCACGCTCGTTTCGTGG
* *
13366911 GTTGGCTTAGGCATACAGAGTTCATTTCATGTCTAA
1 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
13366947 ACGTGTGGAG
Statistics
Matches: 163, Mismatches: 27, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
157 3 0.02
158 93 0.57
159 64 0.39
160 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGTCGGACCGAGGGTTGTGACAAC
AAGACCGACAGCACGTAGAGGGGGACCAGGCCGATCCCCAGCTTGCGCATAATGCCTCTCCAGCC
GACTCAGCGCCCGCACGCTCGTTTCGTGG
Found at i:13367674 original size:26 final size:26
Alignment explanation
Indices: 13367644--13367696 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13367634 GTTAACTTAG
13367644 GCATACGGACTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
* *
13367670 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
13367696 G
1 G
13367697 ATTTTGTGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAGTCTAA
Found at i:13368236 original size:723 final size:723
Alignment explanation
Indices: 13366953--13368421 Score: 2251
Period size: 723 Copynumber: 2.0 Consensus size: 723
13366943 CTAAACGTGT
* *
13366953 GGAGTTCATTTCGAGTCTAAGATTTTGAGCCACGATGCACATGCTGGGCTCGGGCATGTGCTGGT
1 GGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGATGCACATGCTGGGCTCGGGCATGTGCTGGT
* ** * * *
13367018 GTCGTATTTTTTTGGCCCGGGGCACCATCGCCAGAGCATCGTCGGAGAGCCTAACCGACGACATT
66 GCCAAATTTTTTTCGCCCAGGGCACCATCGCCAGAGCATCGTCGGAAAGCCTAACCGACGACATT
* *
13367083 GGGGGTTCCGGTGACTGGGGGGGCCGGGGGGTGTGCACACATGATGTGCAATGGGTGCACGTACT
131 GGGGGTTCCGGCGACTGGGGGGGCCGGGGGCTGTGCACACATGATGTGCAATGGGTGCACGTACT
* * * * *
13367148 TGGCCTTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACACCCCCTTAAAGAGCAT
196 TGGCCCTCATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
*
13367213 TTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
261 TTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
13367278 ATGGTCACAAAATCTTCTCCACTTCGAGTTTTTTGCTGAATTTGTTTGTGCATGCCAACAAAAAT
326 ACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTGTTTGTGCATGCCAACAAAAAT
* * *
13367343 GCAAGGATCACCTCTACCAAATTTAGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGA
391 ACAAGGATCACCTCTACCAAATTTAGGAACAAAAATCTTTCTAAAAAAATTTTAAAAAATCCCGA
** *
13367408 ACCGTAAAAAGTTTTGAAAATCGTGAAACATAGAAAACAGATCATCTTGCCACGAAACTTCACAT
456 ACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAGATCATCTTGCCACGAAACTTCACAT
*
13367473 GAAGGCTTAGGGGACAATTGTATGAATTTACAACCCATAAAAATGGCATTGGAATGGCAGAAATA
521 GAAGGCTTAGGGGACAATTGTATGAATTTACAACCCATAAAAATGGCATTAGAATGGCAGAAATA
* * * *
13367538 TGAAGATGTGCTTGAACCCA-CTTACCACCCGTTCGATCCCCGGCTTGCGTATCCTGCCTCTTTG
586 TGAAGATGTGCTTGAACCCACCTT-CCACCCGTTCGATCCCCAGCTTACGCATCCTGCCTCTCTG
* * *
13367602 GTCGGCTGAGCGTCCGCACGCCCGTTTCATGCGTTAACTTAGGCATACGGACTTCATCCCCAGTC
650 GTCGACTGAGCGTCCACACGCCCATTTCATGCGTTAACTTAGGCATACGGACTTCATCCCCAGTC
13367667 TAAGCATAC
715 TAAGCATAC
* *
13367676 GGAGTTCATTCCCAGTCTAAGATTTTGTGCCACGGTGCACATGCTGGGCTCGGGCATGTGCTGGT
1 GGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGATGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * * *
13367741 GCCAAATTTTTTTCGCCCAGGGCACCATCGTCGGAGCATCGTTGGAAAGCCTAACGGGCGGCATT
66 GCCAAATTTTTTTCGCCCAGGGCACCATCGCCAGAGCATCGTCGGAAAGCCTAACCGACGACATT
* * ** * ** **
13367806 TGGGGTTCCGGCGATTGGGGGGGCCGGGGGCTGTGTGCAGATGATGTGGGATGGGTGCTGGTACT
131 GGGGGTTCCGGCGACTGGGGGGGCCGGGGGCTGTGCACACATGATGTGCAATGGGTGCACGTACT
13367871 TGGCCCTCATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
196 TGGCCCTCATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
13367936 TTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
261 TTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
13368001 ACGGTCACAATATCTTCTCCACTTTGAGTTTTTAGCTGAA-TTGTTTTTTGCATGCCAACAAAAA
326 ACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTG-TTTGTGCATGCCAACAAAAA
* *
13368065 TACAAGGATCACCTTTACCAAATTT-GGAAACAAAAATCTTTCTAAAAAAATTTTAAAAAATCCT
390 TACAAGGATCACCTCTACCAAATTTAGG-AACAAAAATCTTTCTAAAAAAATTTTAAAAAATCCC
* * * * *
13368129 GAACCACAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCAC
454 GAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAGATCATCTTGCCACGAAACTTCAC
* * *
13368194 ATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCATGGCAGAAA
519 ATGAAGGCTTAGGGGACAATTGTATGAATTTACAACCCATAAAAATGGCATTAGAATGGCAGAAA
* *
13368259 TATGAAGATGTGCTTGAACCGACCTTCCACCCGTTTGATCCCCAGCTTACGCATCCTGCCTCTCT
584 TATGAAGATGTGCTTGAACCCACCTTCCACCCGTTCGATCCCCAGCTTACGCATCCTGCCTCTCT
* * * * * *
13368324 GGTCGACTGAGCGTCTACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
649 GGTCGACTGAGCGTCCACACGCCCATTTCATGCGTTAACTTAGGCATACGGACTTCATCCCCAGT
13368389 CTAAGCATAC
714 CTAAGCATAC
*
13368399 GGAGTTCATTCCTAGTCTAAGAT
1 GGAGTTCATTCCCAGTCTAAGAT
13368422 CGAACTGGAC
Statistics
Matches: 672, Mismatches: 71, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
722 5 0.01
723 664 0.99
724 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (723 bp):
GGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGATGCACATGCTGGGCTCGGGCATGTGCTGGT
GCCAAATTTTTTTCGCCCAGGGCACCATCGCCAGAGCATCGTCGGAAAGCCTAACCGACGACATT
GGGGGTTCCGGCGACTGGGGGGGCCGGGGGCTGTGCACACATGATGTGCAATGGGTGCACGTACT
TGGCCCTCATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTGTTTGTGCATGCCAACAAAAAT
ACAAGGATCACCTCTACCAAATTTAGGAACAAAAATCTTTCTAAAAAAATTTTAAAAAATCCCGA
ACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAGATCATCTTGCCACGAAACTTCACAT
GAAGGCTTAGGGGACAATTGTATGAATTTACAACCCATAAAAATGGCATTAGAATGGCAGAAATA
TGAAGATGTGCTTGAACCCACCTTCCACCCGTTCGATCCCCAGCTTACGCATCCTGCCTCTCTGG
TCGACTGAGCGTCCACACGCCCATTTCATGCGTTAACTTAGGCATACGGACTTCATCCCCAGTCT
AAGCATAC
Found at i:13368403 original size:26 final size:26
Alignment explanation
Indices: 13368367--13368419 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13368357 GTTGACTTAG
13368367 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13368393 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13368419 G
1 G
13368420 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13368658 original size:22 final size:21
Alignment explanation
Indices: 13368606--13368659 Score: 90
Period size: 21 Copynumber: 2.5 Consensus size: 21
13368596 TTCTGGCAGC
*
13368606 GGGACCGACTGCATGCGGAGG
1 GGGACCGACTGCATGCAGAGG
13368627 GGGACCGACTGCATGCAGAGG
1 GGGACCGACTGCATGCAGAGG
13368648 GGGACCGGACTG
1 GGGACC-GACTG
13368660 ATCCCCGGCT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 26 0.84
22 5 0.16
ACGTcount: A:0.20, C:0.24, G:0.46, T:0.09
Consensus pattern (21 bp):
GGGACCGACTGCATGCAGAGG
Found at i:13368936 original size:158 final size:158
Alignment explanation
Indices: 13368659--13369231 Score: 623
Period size: 158 Copynumber: 3.6 Consensus size: 158
13368649 GGACCGGACT
* ** * * * *
13368659 GATCCCCGGCTTGCGTGTTATGCCTCTCCGGCCGACTGAGCGCCCACACGCTCATTTTGTAGGTT
1 GATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTT
* * * *
13368724 -AGCTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCGGATCAGACCGAAGGTTGCAACAGCA
66 GA-CTTAGGCATACGAAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCA
* * * *
13368787 GGATTGACAGCATGTAGGGGGGACCGGGTC
129 GGATCGACAGCAAGCAGGGGGGATCGGGTC
* * * * *
13368817 GATACCCGTCTTACGCATTCTGCCTCTCTGGCCGACTGAACGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTT
* *
13368882 GACTTATGCATACGAAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCAGCAACAG
66 GACTTAGGCATACGAAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAG
* * *
13368946 GATCGATAGCACGCAGGGGGGATCGGGCC
130 GATCGACAGCAAGCAGGGGGGATCGGGTC
* * * *
13368975 GATCCCCGGCTTACGCATTCTGCCTCTCTGGTCGACTGAGCACCCGCACGCCCATTTCGTGGGTT
1 GATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTT
* * * * ** * **
13369040 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCCACCTGGACCGAGGGTTGTGGCAGCAG
66 GACTTAGGCATACGAAGTTCATTCCATGTCTAAGATCAGACC-AGACCGAGGGTTGCAGCAGCAG
13369104 GATCGACAGCAAGCAGGGGGGATCGGGTC
130 GATCGACAGCAAGCAGGGGGGATCGGGTC
* * * * * * * ** *
13369133 GATCCCCGGCTTACACATTCTACCTTTCCGACCGGCTGAGCGCCCGAACACTTGTTTCATGGGTT
1 GATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTT
* * *
13369198 GGCTTAGGCATACGAATTTCAGTCCATGTCTAAG
66 GACTTAGGCATACGAAGTTCATTCCATGTCTAAG
13369232 CATACGGAGT
Statistics
Matches: 349, Mismatches: 63, Indels: 6
0.83 0.15 0.01
Matches are distributed among these distances:
157 7 0.02
158 341 0.98
159 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (158 bp):
GATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTT
GACTTAGGCATACGAAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGG
ATCGACAGCAAGCAGGGGGGATCGGGTC
Found at i:13369244 original size:26 final size:26
Alignment explanation
Indices: 13369205--13369257 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
13369195 GTTGGCTTAG
*
13369205 GCATACGAATTTCAGT-CCATGTCTAA
1 GCATACGAAGTTCAGTCCCA-GTCTAA
* *
13369231 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAGTCCCAGTCTAA
13369257 G
1 G
13369258 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCAGTCCCAGTCTAA
Found at i:13369938 original size:26 final size:26
Alignment explanation
Indices: 13369902--13369954 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13369892 GTTGACTTAG
13369902 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
**
13369928 GCATACGGAGTTCATTTCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
13369954 G
1 G
13369955 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:13370327 original size:159 final size:158
Alignment explanation
Indices: 13369928--13370430 Score: 383
Period size: 159 Copynumber: 3.2 Consensus size: 158
13369918 CCTAGTCTAA
* * * *
13369928 GCATACGGAGTTCATTTCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCAGGATCGACA
1 GCATAGGGAGTTCA-TTCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * * * * ***
13369993 GCACGCAGGGGGGA-CCGACTCGATCCCCGGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCGC
65 GCACGTAAGGGGGATCGGGCTCAATCACCGGCTTACACATTATGCCTCTCCGACCAACTGAGCGC
* *
13370057 CCGCACGCCTGTTTCGTGAGTTGGCTTAG
130 CCGCACGCCTGTTTCATGAGTTGACTTAG
* * * ** * * * * * *
13370086 GTATAGGGCGTTAATTCCACGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGA-CCAGC
1 GCATAGGGAGTTCATTCCA-GTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGA-C
* * * *
13370150 AGCATGTAGAGGGGGATCGGGC-CAATCATCGGCTTACACATTATGCCTCTCTGGCCAACTCGA-
64 AGCACGTA-AGGGGGATCGGGCTCAATCACCGGCTTACACATTATGCCTCTCCGACCAACT-GAG
* *
13370213 CGCCCGTACG-CTCGTTTCATGGGTTGACTTAG
127 CGCCCGCACGCCT-GTTTCATGAGTTGACTTAG
* *
13370245 GCATAGGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGTAGGATCGATA
1 GCATAGGGAGTTCATT-CCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
** * * * * * ***
13370310 GCACGTAAGGGGAGATCGGG-TCGGTC-CTCGGCTTGCGCATTCTGCATCACCGACCGGTTGAGC
65 GCACGTAAGGGG-GATCGGGCTCAATCAC-CGGCTTACACATTATGCCTCTCCGACCAACTGAGC
* *
13370373 GCCCGCACG-CTCGTTTCATGGGTTGGCTTAG
128 GCCCGCACGCCT-GTTTCATGAGTTGACTTAG
* * * *
13370404 ACATACGGAGTTTATACCATGTCTAAG
1 GCATAGGGAGTTCATTCCA-GTCTAAG
13370431 CATACGGTGT
Statistics
Matches: 265, Mismatches: 67, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
157 6 0.02
158 59 0.22
159 190 0.72
160 10 0.04
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATAGGGAGTTCATTCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGACAG
CACGTAAGGGGGATCGGGCTCAATCACCGGCTTACACATTATGCCTCTCCGACCAACTGAGCGCC
CGCACGCCTGTTTCATGAGTTGACTTAG
Found at i:13370595 original size:184 final size:185
Alignment explanation
Indices: 13370245--13370615 Score: 474
Period size: 184 Copynumber: 2.0 Consensus size: 185
13370235 GTTGACTTAG
* * * * *
13370245 GCATAGGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGAACGAACCGGACCAAGGGTTACGGTAGCAGGATCGATA
* * * * * ** * *
13370310 GCACGTAAGGGGAGATCGGGTCGGTCCTCGGCTTGCGCATTCTGCATCACCGACCGGTTGAGCGC
66 GCACATAAGGGGAGATCGAGCCGATCCCCAACTTGCGCATTCTACATCACCGACCGGCTGAGCGC
* *
13370375 CCGCACGCTCGTTTCATGGGTTGGCTTAGACATACGGAGTTTATACCATGTCTAA
131 CCGCACACTCGTTTCATGGGTTGGCTTAGACATACGGAGTTCATACCATGTCTAA
* * *
13370430 GCATACGGTGTTCATTCCCAGTCTAAGAACGGACTGGACCAAGGGTTACGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGAACGAACCGGACCAAGGGTTACGGTAGCAGGATCGATA
* * * * * * *
13370495 GCACAT-AGGGGGGATCGAGCCGATCCCCAACTTGCTCATTCTACCTCTCCGATCGGCTGGGTGC
66 GCACATAAGGGGAGATCGAGCCGATCCCCAACTTGCGCATTCTACATCACCGACCGGCTGAGCGC
* * *
13370559 CCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CCGCACACTCGTTTCATGGGTTGGCTTAGACATACGGAGTTCATACCATGTCTAA
13370614 GC
1 GC
13370616 CTGAACCTGA
Statistics
Matches: 157, Mismatches: 29, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
184 95 0.61
185 62 0.39
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGAACGAACCGGACCAAGGGTTACGGTAGCAGGATCGATA
GCACATAAGGGGAGATCGAGCCGATCCCCAACTTGCGCATTCTACATCACCGACCGGCTGAGCGC
CCGCACACTCGTTTCATGGGTTGGCTTAGACATACGGAGTTCATACCATGTCTAA
Found at i:13370768 original size:26 final size:26
Alignment explanation
Indices: 13370732--13370784 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13370722 GTTGACTTAG
*
13370732 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
* *
13370758 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
13370784 G
1 G
13370785 ATCGGATCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGCCTAA
Found at i:13371219 original size:158 final size:158
Alignment explanation
Indices: 13370758--13371258 Score: 546
Period size: 158 Copynumber: 3.2 Consensus size: 158
13370748 CCCAGCCTAA
* * *
13370758 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGATCAAACCGAGGGTTGCAGCAGCAGGATCGAC
1 GCATACAGAGTTCATTCCCATGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * *
13370822 AGCACGTTGAGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGC
66 AGCACGTAG-GGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGC
* *
13370887 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGAGTTGGCTTAG
** * ** * * * *
13370916 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCGAACCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACAGAGTTCATTCCCATGTCTAAGATCGGA-CCGAACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * *
13370979 CCGCACGTAGAGGGGGGACTGGGCCGATCCCCGGCTTGCGAATTATGCCTCTTCGATCGGCTCAG
65 CAGCACGT--A-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAG
* * *
13371044 CGCCCGCACGCTTGTTTCGTGAGTTGACTTAT
127 CGCCCGCACGCTCGTTTCGTGAGTTGGCTTAG
* * **
13371076 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGCGGTGGCAGGATCGAC
1 GCATACAGAGTTCATTCCCATGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGAC
* ** * * *
13371140 GGCACGTAGGGGAGACCACGCCGATCCCCAGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGCGA
66 AGCACGTAGGGG-GACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGC
13371205 CCGCACGCTCGTTTCGT-AGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGA-GTTGGCTTAG
13371234 GCATACAGAGTTCA-TCCCATGTCTA
1 GCATACAGAGTTCATTCCCATGTCTA
13371259 CGCACACAGA
Statistics
Matches: 278, Mismatches: 55, Indels: 20
0.79 0.16 0.06
Matches are distributed among these distances:
157 15 0.05
158 136 0.49
160 121 0.44
161 6 0.02
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCATGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGAC
AGCACGTAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCGTTTCGTGAGTTGGCTTAG
Found at i:13372506 original size:26 final size:26
Alignment explanation
Indices: 13372456--13372508 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13372446 GTTGGCTTAG
* *
13372456 GCATACGGTGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13372482 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13372508 G
1 G
13372509 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13372902 original size:26 final size:26
Alignment explanation
Indices: 13372824--13372890 Score: 125
Period size: 26 Copynumber: 2.6 Consensus size: 26
13372814 GTTGACTTAG
*
13372824 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
13372850 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
13372876 GCATATGGAGTTCAT
1 GCATATGGAGTTCAT
13372891 TCTCAATCTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:13373183 original size:159 final size:159
Alignment explanation
Indices: 13373008--13373378 Score: 358
Period size: 158 Copynumber: 2.3 Consensus size: 159
13372998 GAGCACCCAC
* * * * *
13373008 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCGGAC
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGACCAGAC
* * * *
13373072 CGAGGGTTATGGCAGCGGGACCGACAGCACGTAGAGGGGGA-TCGAGCCGATCCTTGACTTACGC
66 CGAGGGTTACGGCAACAGGACCGACAGCACGTAG-GGGGGACT-GAGCCGATCCTCGACTTACGC
*
13373136 ATTATGCCTCT-TCAACCGGCTCATCG-CCTGA
129 ATTATGCCTCTCT-AACCGGCTCAGCGTCC-GA
* * ** * *
13373167 ACGCTCGTTTCGTGGGTTGACTTATGCATATAGAGTTCATTCC-TAGTCTAAG-ATTAGATCAGA
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACTAGACCAGA
* * * * * * *
13373230 CCGAGGGTTACGGCAATAGGATCGACAGCAGGTAGGGGGGACTGGGTCGATCCTCGGCTTATGCA
65 CCGAGGGTTACGGCAACAGGACCGACAGCACGTAGGGGGGACTGAGCCGATCCTCGACTTACGCA
* *** * *
13373295 TTCTGCCTCTCTGGTCGGCTGAGCGTCCGC
130 TTATGCCTCTCTAACCGGCTCAGCGTCCGA
* ** *
13373325 ACGCTCGTTTCGTGGGTTAGCCAAGGCAGACGGAGTTCATTCCATGTCTAAGCA
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13373379 TACAGAGTTC
Statistics
Matches: 169, Mismatches: 36, Indels: 14
0.77 0.16 0.06
Matches are distributed among these distances:
158 87 0.51
159 82 0.49
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (159 bp):
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGACCAGAC
CGAGGGTTACGGCAACAGGACCGACAGCACGTAGGGGGGACTGAGCCGATCCTCGACTTACGCAT
TATGCCTCTCTAACCGGCTCAGCGTCCGA
Found at i:13374119 original size:26 final size:26
Alignment explanation
Indices: 13374083--13374132 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13374073 GACTTAGGCT
13374083 TACGGAGTTCATTCCTAGCCTAAGCA
1 TACGGAGTTCATTCCTAGCCTAAGCA
*
13374109 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCTAGCCTAAG
13374133 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCTAGCCTAAGCA
Found at i:13374616 original size:26 final size:26
Alignment explanation
Indices: 13374580--13374632 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13374570 GTTGGCTTAG
*
13374580 GCATACTGAGTTAATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
*
13374606 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
13374632 G
1 G
13374633 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:13376147 original size:159 final size:158
Alignment explanation
Indices: 13375839--13376341 Score: 511
Period size: 157 Copynumber: 3.2 Consensus size: 158
13375829 CCCAGTCTCA
* * * * *
13375839 GCATACGGCGTTCATTCCCA-GTCTAAG-ATCGGATCAGACCGAGGGTTGCGACAGCAAGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCAGACCGAGGGTTGTG-CAGCAGGATCGG
* * * ** *
13375902 TAGCACGCAGGAGGGATCGGGCCGATCCCTAGCTTGCACATTCTGCCTCTCC-AGCCGGCTGAGC
64 CAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGA-TCGGCTGAGC
* *
13375966 GCCCGTATGCCCGTTTCATGGGTTGGCTTAG
128 GCCCGCATGCTCGTTTCATGGGTTGGCTTAG
* * * *
13375997 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGTCCGAGGGTTGTGGCAGCGGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGACCGAGGGTTGT-GCAGCAGGATCGGC
* * * * * *
13376061 ACCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCGATCGGCTCAGTG
65 AGCACGCAG-GGGGGATCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCG
* * * *
13376126 CCGGCATGCTCGTTTCGTGGGTTGACTTAA
129 CCCGCATGCTCGTTTCATGGGTTGGCTTAG
** * * * *
13376156 GCATACAAAGTTCATTCCCA-GTCTAAG-ATCAGAGCAGACCGAGGGTTAGT--AGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCAGACCGAGGGTT-GTGCAGCAGGATCGG
* * * * *
13376217 CAGCACGCATGGGGGGA-CTGGGCCGGTCCCCAACTTGTGCATTCTGCCTTTCTGATCGACTGAG
64 CAGCACGCA-GGGGGGATC-GGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGATCGGCTGAG
*
13376281 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
127 CGCCCGCATGCTCGTTTCATGGGTTGGCTTAG
13376313 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
13376342 TACGGAGTTC
Statistics
Matches: 278, Mismatches: 55, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
156 4 0.01
157 108 0.39
158 58 0.21
159 102 0.37
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGACCGAGGGTTGTGCAGCAGGATCGGCA
GCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCC
CGCATGCTCGTTTCATGGGTTGGCTTAG
Found at i:13376363 original size:26 final size:26
Alignment explanation
Indices: 13376313--13376365 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13376303 GTTGGCTTAG
*
13376313 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13376339 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13376365 G
1 G
13376366 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13377144 original size:26 final size:26
Alignment explanation
Indices: 13377108--13377160 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13377098 GTTGACTTTG
13377108 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13377134 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13377160 G
1 G
13377161 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13377519 original size:159 final size:159
Alignment explanation
Indices: 13377195--13377565 Score: 370
Period size: 159 Copynumber: 2.3 Consensus size: 159
13377185 TAGTAGGATT
* * * * ** * ** *
13377195 GACAGCACACA-GGGGAGACCGAGCCGATCCCGGGCTTGCATATTCTGCCTCTCCGGCCGGCTGA
1 GACAGCACGCATGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTAGCTCA
** * * * * * *
13377259 GCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
66 GCGGTCGTATGCCCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCAAGTCTAAACCCCA
* * * *
13377324 GCTGGATCGAGGGTTGTGGCAGCGGGACC
131 GCTGGACCGAGAGTTGCGGCAGCAGGACC
* * * *
13377353 GATAGCACGTA-GAGGGGGATCGGGCCGATCCCCGGTTTGCGCATTATGCCTCTCCGGCTAGCTC
1 GACAGCACGCATG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTAGCTC
* **
13377417 AGCGGTCGTATGCCCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCAAGTCTAAA-ATC
65 AGCGGTCGTATGCCCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCAAGTCTAAACCCC
* * * * *
13377481 GGATTGGACCGAGAGTTGCGTCAGTAGGATC
130 AG-CTGGACCGAGAGTTGCGGCAGCAGGACC
* * *
13377512 GACAGCACGCATGGGGGGACCGGGCTGGTCCCCGGCTTGCGCATTCTGCCTCTC
1 GACAGCACGCATGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTC
13377566 GGTCGGTTGA
Statistics
Matches: 169, Mismatches: 41, Indels: 5
0.79 0.19 0.02
Matches are distributed among these distances:
158 11 0.07
159 157 0.93
160 1 0.01
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.22
Consensus pattern (159 bp):
GACAGCACGCATGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTAGCTCA
GCGGTCGTATGCCCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCAAGTCTAAACCCCA
GCTGGACCGAGAGTTGCGGCAGCAGGACC
Found at i:13377639 original size:26 final size:26
Alignment explanation
Indices: 13377609--13377661 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13377599 GTTGGCTTAG
*
13377609 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
13377635 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
13377661 G
1 G
13377662 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:13378018 original size:26 final size:26
Alignment explanation
Indices: 13377988--13378037 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
13377978 GGTGACTTAG
*
13377988 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13378014 GCATACAGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATCCCCAGTCT
13378038 CAGATAGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13378323 original size:158 final size:159
Alignment explanation
Indices: 13378014--13378673 Score: 589
Period size: 158 Copynumber: 4.2 Consensus size: 159
13378004 CCCAGTCTAA
* * * * * * * *
13378014 GCATACAGAGTTCATTCCCAGTCTCAGAT-AGGACCGGATCGAAGGATGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAAGTCTAAGATCA-GACCGGACCGAGGGTTACGGCAGCAGGATCGAC
* ** * * * * * * * *
13378078 AGCACGCA-AGACGGATTAGGTCGATCCCCGGCTTGC-GCATTCTGCCACTCCGGTCGACTGAGC
65 AGCACACAGAGGGGGATCAGGCCGATCCCTGGCTT-CTACATTATGCCTCTCCGATCGACTCAGC
* *
13378141 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * * ** *
13378172 GCATAGGGAGTTCATTCCAAGTCTAAGCCCTAG-CTGAACCGAGGGTTGTGGCAGCAGGACCGAC
1 GCATACGGAGTTCATTCCAAGTCTAAGATC-AGACCGGACCGAGGGTTACGGCAGCAGGATCGAC
* * *
13378236 AGCACGCAGAGGGGGACCAGGCCGAT-CCTCGGCTTACT-CATTATGCCTCTTCGATCGACTCAG
65 AGCACACAGAGGGGGATCAGGCCGATCCCT-GGCTT-CTACATTATGCCTCTCCGATCGACTCAG
* *
13378299 CGCCCGCACGCTCGTTTCCT-GGTTGACTTAT
128 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
** * * * * *
13378330 GCATACAAAGTTCATTCCCAGTGTAAGATCAGACCGGACCAAGGGTTCCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACA
* ** * * * * * *
13378395 ACACACAGAGGGGGATGGGGCCGATCCCTGACTTGTAGATTATGCCTCTTCGATCGGCTCAGTGC
66 GCACACAGAGGGGGATCAGGCCGATCCCTGGCTTCTACATTATGCCTCTCCGATCGACTCAGCGC
* * * *
13378460 CCGTACGCTCATTTTGTGGGTTGACTTAT
131 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
13378489 GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGATACGGTAGTAGGATTGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * * *
13378554 GCATACAG-GGGGGATCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGACTGAGCGC
66 GCACACAGAGGGGGATCAGGCCGATCCCTGGCTTCTACATTATGCCTCTCCGATCGACTCAGCGC
* * *
13378618 CCGTATGCTCGTTTCGTGGGTTGGCTTAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAG
*
13378647 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCAAGTCTAAG
13378674 CATACGGAGT
Statistics
Matches: 406, Mismatches: 87, Indels: 18
0.79 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 273 0.67
159 129 0.32
160 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACA
GCACACAGAGGGGGATCAGGCCGATCCCTGGCTTCTACATTATGCCTCTCCGATCGACTCAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:13378697 original size:26 final size:26
Alignment explanation
Indices: 13378647--13378699 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13378637 GTTGGCTTAG
* *
13378647 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCATATCTAA
13378673 GCATACGGAGTTCACTCCCA-ATCTAA
1 GCATACGGAGTTCA-TCCCATATCTAA
13378699 G
1 G
13378700 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATATCTAA
Found at i:13379394 original size:26 final size:26
Alignment explanation
Indices: 13379358--13379410 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13379348 GTTGACTTAG
* *
13379358 GCATACGGAGTTCATCCCCGGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13379384 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13379410 G
1 G
13379411 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13380097 original size:26 final size:26
Alignment explanation
Indices: 13380061--13380114 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
13380051 TGGGTTGACT
*
13380061 TAGGTATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
* *
13380087 TAGGCATACGGAGTTCATTCCCATTC
1 TAGGCATACGGAGTTCATCCCCAGTC
13380113 TA
1 TA
13380115 AGATCGAACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Done.