Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 96 of 402
Found at i:13381295 original size:26 final size:26
Alignment explanation
Indices: 13381266--13381318 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13381256 GTTGGCTTAG
*
13381266 GCATACGGTGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
*
13381292 GCATACGGAGTTTATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
13381318 G
1 G
13381319 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:13382039 original size:26 final size:24
Alignment explanation
Indices: 13381998--13382050 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 24
13381988 TAGGCAAACG
13381998 GAGTTCATCCCTAGTCTAAGCATACA
1 GAGTTCATCCCTAGTCTAAG-ATA-A
13382024 GAGTTCATTCCC-AGTCTAAGATAA
1 GAGTTCA-TCCCTAGTCTAAGATAA
13382048 GAG
1 GAG
13382051 CGGACCGAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
24 4 0.15
25 3 0.12
26 15 0.58
27 4 0.15
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (24 bp):
GAGTTCATCCCTAGTCTAAGATAA
Found at i:13382316 original size:157 final size:157
Alignment explanation
Indices: 13382017--13382357 Score: 434
Period size: 157 Copynumber: 2.2 Consensus size: 157
13382007 CCTAGTCTAA
* * *
13382017 GCATACAGAGTTCATTCCCAGTCTAAGATAAGAGCGGACCGAGGGTTGCGGTAGCAGGATCAGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATAAGACCAGACCGAGGGTTACGGTAGCAGGATCAGCA
* * * *
13382082 GCACGCAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCACCC
66 GCACGCAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTCCGACCGGCTCAGCACCC
** *
13382147 GTATGCTTGTTTCATGGGCTGACTTAG
131 ACACGCTTGTTTCATGGGCTGACTTAG
* *
13382174 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATC-GAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATAAGACCAGACCGAGGGTTACGGTAGCAGGATCAG-C
* * * * * * *
13382238 AGCACGTAGGGGGACCTGGCCGGTCCCCGACTTGTGCATTCTACCTCTCCGACCGGCTGAGCGCC
65 AGCACGCAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTCCGACCGGCTCAGCACC
* * *
13382303 CACACG-TTCGTTTCGTGGGTTGGCTTAG
130 CACACGCTT-GTTTCATGGGCTGACTTAG
**
13382331 GCATACAGAGTTCATTCCTTGTCTAAG
1 GCATACAGAGTTCATTCCCAGTCTAAG
13382358 CATATGGAGT
Statistics
Matches: 157, Mismatches: 25, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
156 3 0.02
157 154 0.98
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATAAGACCAGACCGAGGGTTACGGTAGCAGGATCAGCA
GCACGCAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTCCGACCGGCTCAGCACCC
ACACGCTTGTTTCATGGGCTGACTTAG
Found at i:13383613 original size:26 final size:26
Alignment explanation
Indices: 13383583--13383635 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13383573 GTTGGCTTAG
13383583 GCATACGGAGTTCATT-CTATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
13383609 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13383635 G
1 G
13383636 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13384284 original size:158 final size:159
Alignment explanation
Indices: 13383891--13384295 Score: 408
Period size: 159 Copynumber: 2.6 Consensus size: 159
13383881 CCCCGACTTA
* * * * * *
13383891 CACATTCTGCCTCTCTGATCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTAGCTTAGGCATAG
1 CACATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * * *
13383956 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGT
66 GGAGTTCATTCCATGTCTAAGCACCAGTCGGACCGAGGGTTGCGACAGCAGGACCGACAGCACGC
* *
13384021 AGAGGAGGATCGGGCCGATCCCTAGCTTG
131 AGAGGAGGACCAGGCCGATCCCTAGCTTG
* * * ** ** *
13384050 CACATTATGCCTCTCCGG-CTGGCTCAGCGTCCGCACGCTTATTTCGTGCATTGACTTAGGCATA
1 CACATTCTGCCTCTCCGGTC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* * * * ** *
13384114 CGGAGCTCATTCC-TAGTTTAAG-ATCAGATCGGACCGAGGGTTGCGATAGCAGGATTGACAGTA
65 CGGAGTTCATTCCAT-GTCTAAGCACCAG-TCGGACCGAGGGTTGCGACAGCAGGACCGACAGCA
* *
13384177 CGCACG-GG-GGACCAGGCCGGTCCCT-GACTTT
128 CGCA-GAGGAGGACCAGGCCGATCCCTAG-CTTG
* * * *
13384208 CGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGGAAGCTCGTTTCATGGGTTGGCTTAGGCATAC
1 CACATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
*
13384273 GGAGTTTATTCCATGTCTAAGCA
66 GGAGTTCATTCCATGTCTAAGCA
13384296 TACGGAGTTC
Statistics
Matches: 193, Mismatches: 45, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
157 1 0.01
158 89 0.46
159 102 0.53
160 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
CACATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCACCAGTCGGACCGAGGGTTGCGACAGCAGGACCGACAGCACGC
AGAGGAGGACCAGGCCGATCCCTAGCTTG
Found at i:13384317 original size:26 final size:26
Alignment explanation
Indices: 13384267--13384319 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13384257 GTTGGCTTAG
* *
13384267 GCATACGGAGTTTATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13384293 GCATACGGAGTTCATTCC-TAATCTAA
1 GCATACGGAGTTCATTCCAT-ATCTAA
13384319 G
1 G
13384320 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13384672 original size:26 final size:26
Alignment explanation
Indices: 13384633--13384685 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13384623 GTTGACTTAG
*
13384633 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
*
13384659 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
13384685 G
1 G
13384686 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAGTCTAA
Found at i:13385367 original size:197 final size:196
Alignment explanation
Indices: 13385057--13385531 Score: 576
Period size: 197 Copynumber: 2.4 Consensus size: 196
13385047 CCCGACTTGT
* * *
13385057 GCATTCTGCCTCTCCAGTCGGTTGAGCACCCGAACGCTCGTTTTATGGGTTGGCTTAGGCATACG
1 GCATTCTGCCTCTCCGGTCGGCTGAGCACCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACG
* * *
13385122 GAGTTAATTCCATGTCTCAGCATACGGAGTTCATTCATAGTCTAAGATC-AGATCGGACAGA-GG
66 GAGTTAATTCCATGTCTAAGCATACGGAGTTCATTCATAGTCTAAGATCGA-ACCAGACAGAGGG
* ** * * *
13385185 CTTGTGGTAGCAAGACCAGTAGCAGGATCGGTAGCACACAGGAAGGGACCGGATCGATCCCCGGC
130 CTT-CGACAGCAAGACCAGCAGCAGGATCGGCAGCACACAGG-AGGGACCGGATCGATCCCCAGC
13385250 TTAC
193 TTAC
* * * * *
13385254 GCATTCTACCTCTCCGGCCGGCTGAGCACCCGGATGCTCGTTTCATGGGTTGGCTTAGGCATACA
1 GCATTCTGCCTCTCCGGTCGGCTGAGCACCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACG
* * * * *
13385319 GAGTTCATTACATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGG
66 GAGTTAATTCCATGTCTAAGCATACGGAGTTCATTCATAGTCTAAGATCGAACCAGACAGAGGGC
* * * * *
13385384 TTCGACAGTAAGACCAGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTG
131 TTCGACAGCAAGACCAGCAGCAGGATCGGCAGCACACAGGAGGGACCGGATCGATCCCCAGCTTA
13385449 C
196 C
* * ** ** * * *
13385450 ACATTCTGCCTCTCCGATCGGCTGAGTGCCCCCACACCCGTTTCATGCGTTGGCTTAGGCATACG
1 GCATTCTGCCTCTCCGGTCGGCTGAGCACCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACG
*
13385515 GAGTTTATTCCATGTCT
66 GAGTTAATTCCATGTCT
13385532 GAGCCCCAGC
Statistics
Matches: 234, Mismatches: 42, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
196 89 0.38
197 140 0.60
198 5 0.02
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (196 bp):
GCATTCTGCCTCTCCGGTCGGCTGAGCACCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACG
GAGTTAATTCCATGTCTAAGCATACGGAGTTCATTCATAGTCTAAGATCGAACCAGACAGAGGGC
TTCGACAGCAAGACCAGCAGCAGGATCGGCAGCACACAGGAGGGACCGGATCGATCCCCAGCTTA
C
Found at i:13386010 original size:26 final size:26
Alignment explanation
Indices: 13385980--13386032 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13385970 GTCGACTTAG
13385980 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
13386006 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13386032 G
1 G
13386033 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13386307 original size:343 final size:343
Alignment explanation
Indices: 13385663--13386377 Score: 931
Period size: 343 Copynumber: 2.1 Consensus size: 343
13385653 GTTGACTTAG
* * * * *
13385663 GCATACGGATTTCATTCCCCA-TCTAAGATCAGACCAGATCGAGGGTTGCAGCAGTAGGATTGGC
1 GCATACGGAGTTCATT-CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGAC
* * * *
13385727 AGCATGCAAGAGGGACCAGGTTGATCCCCGGCTTGCATATTCTGCCTCTCCGACCAGCTGAGCGC
65 AGCACGCAAGAGGGACCAGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCGACCAGCTAAGCGC
*
13385792 CCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
130 CCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
* * * * *
13385857 GATCGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGATCGAGTCAGTCCTCGGCTTAC
195 AACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGAGTCAGTCCCCGGCTTAC
* * *
13385922 GCATTTTGCCTCTCCGACCGGCTGAGCGCTCGCACACTTGTTTCATGGGTCGACTTAGGCATACG
260 GCATTCTGCCTCTCCGACCGGCTGAGCCCTCACACACTTGTTTCATGGGTCGACTTAGGCATACG
13385987 GAGTTCATCCC-TAGTCTAA
325 GAGTTCATCCCAT-GTCTAA
* * * * *
13386006 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * ** **
13386071 GCACGGAGGGGGGACC-GAGCTGATCCCGGGCTTGTGCATTCTGCCTCTCCGGTC-GACTAAGCG
66 GCACGCAAGAGGGACCAG-GCTGATCCCCGGCTTGCACATTCTGCCTCTCCGACCAG-CTAAGCG
*
13386134 CCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTT
129 CCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * *
13386199 GAACCGAGGGTTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGATCG-GGCTGATCCCCGGCTT
194 GAACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGAGTCAG-TCCCCGGCTT
* * * * * * *
13386263 GCGCATTCTGCTTCTCC-AGTCGGCTGAGCTCCT-ACACGCTTGTTTCGTGGGTTGGCTTAGGCA
258 ACGCATTCTGCCTCTCCGA-CCGGCTGAGC-CCTCACACACTTGTTTCATGGGTCGACTTAGGCA
*
13386326 TACGGAGTTCATTCCATGTCTAA
321 TACGGAGTTCATCCCATGTCTAA
13386349 GCATACGGAGTTCATTCCCAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
13386378 TTTGAGCCAG
Statistics
Matches: 321, Mismatches: 44, Indels: 14
0.85 0.12 0.04
Matches are distributed among these distances:
342 10 0.03
343 308 0.96
344 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (343 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACA
GCACGCAAGAGGGACCAGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCGACCAGCTAAGCGCC
CGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGA
ACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGAGTCAGTCCCCGGCTTACG
CATTCTGCCTCTCCGACCGGCTGAGCCCTCACACACTTGTTTCATGGGTCGACTTAGGCATACGG
AGTTCATCCCATGTCTAA
Found at i:13386318 original size:159 final size:158
Alignment explanation
Indices: 13386043--13386350 Score: 427
Period size: 159 Copynumber: 1.9 Consensus size: 158
13386033 ATCGGATCGG
* * * *
13386043 ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGGAGGGGGGACCGAGCTGATCCCGGGCTTGTGC
1 ACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGGGGGGACCGAGCTGATCCCCGGCTTGCGC
* * * *
13386108 ATTCTGCCTCTCCGGTCGACTAAGCGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGA
66 ATTCTGCCTCTCCAGTCGACTAAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGA
13386173 GTTCATTCCATGTCTAAGCCCCAGTTGA
131 GTTCATTCCATGTCTAAGCCCCAGTTGA
* ** * *
13386201 ACCGAGGGTTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCG
1 ACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAG-GGGGGACCGAGCTGATCCCCGGCTTGCG
* * * * * **
13386266 CATTCTGCTTCTCCAGTCGGCTGAGCTCCTACACGCTTGTTTCGTGGGTTGGCTTAGGCATACGG
65 CATTCTGCCTCTCCAGTCGACTAAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGG
13386331 AGTTCATTCCATGTCTAAGC
130 AGTTCATTCCATGTCTAAGC
13386351 ATACGGAGTT
Statistics
Matches: 129, Mismatches: 20, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
158 31 0.24
159 98 0.76
ACGTcount: A:0.17, C:0.27, G:0.33, T:0.23
Consensus pattern (158 bp):
ACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGGGGGGACCGAGCTGATCCCCGGCTTGCGC
ATTCTGCCTCTCCAGTCGACTAAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCCCCAGTTGA
Found at i:13386359 original size:26 final size:26
Alignment explanation
Indices: 13386323--13386375 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13386313 GTTGGCTTAG
13386323 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13386349 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13386375 G
1 G
13386376 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13388210 original size:158 final size:158
Alignment explanation
Indices: 13387804--13388211 Score: 403
Period size: 159 Copynumber: 2.6 Consensus size: 158
13387794 TGATCCTTAG
* ** * * * *
13387804 CTTGCGCATTCTGCCTCTCCGGCCATCTGAGAGCCCGCACGCCCGTTTCGTGCGTTGGCTGAGGC
1 CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* ** * * *
13387869 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACCGATAGC
66 ATACGGAGTTCATTCCATG-CTAAGCCCCAGCCAGACCGAGGATTGTGACAGCAGGACCGATAGC
* *
13387934 ATGCAGAGGGGGACTGGGCCAATCCCCGA
130 ATGCAGAGGGGGACTAGACCAATCCCCGA
* * * * * * *
13387963 CTTGCGCATTATGCCTCTCCGACTGGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGC
1 CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* ** * *
13388028 ATTCGGAGTTCATTCCCAAT-CTAAG-TTCAGACCAGACCGAGGATTGTGACAGTAGGATCGATA
66 ATACGGAGTTCATT-CC-ATGCTAAGCCCCAG-CCAGACCGAGGATTGTGACAGCAGGACCGATA
* * ** *
13388091 GC-TCGTAG-GGGGGA-TCAGATCGGTCCTCGA
128 GCAT-GCAGAGGGGGACT-AGACCAATCCCCGA
**
13388121 CTTGCTTATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
*
13388186 ATACGGAGTTTATTCCATGCCTAAGC
66 ATACGGAGTTCATTCCATG-CTAAGC
13388212 ATACAGAGTT
Statistics
Matches: 198, Mismatches: 43, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
156 2 0.01
157 3 0.02
158 91 0.46
159 98 0.49
160 2 0.01
161 2 0.01
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (158 bp):
CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGCTAAGCCCCAGCCAGACCGAGGATTGTGACAGCAGGACCGATAGCA
TGCAGAGGGGGACTAGACCAATCCCCGA
Found at i:13388605 original size:159 final size:162
Alignment explanation
Indices: 13388274--13389048 Score: 490
Period size: 159 Copynumber: 4.9 Consensus size: 162
13388264 CAGGACCAGT
* * * * * * * *
13388274 AGCAGGATCGACAACACGTA-CGGG-GGACCAGGTCGAT-CCTTGACTTGTGCATTCTGCCTCTT
1 AGCAGGATCGACAGCACGTAGAGGGCGGACCGGGCCGATCCCTAG-CTTGCGCATTATGCCTCTC
* * * * * * * *
13388336 CGG-TCGGTTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTGGGCATAGGGAGTTCATT-CCA
65 CGGCTCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* ** *
13388399 TGTCTAAG-CCCCAGTC-GGA-CGAAGGGTTATGGC
130 -GTCTAAGATCGGA-TCTGGATCG-AGGGTTACGGC
* * * * *
13388432 AGCGGGACCGACAGCACGTAGAGAG-GGATCGGGCTGATCCCTAGCTTGCGCATTATGCCTCTCC
1 AGCAGGATCGACAGCACGTAGAGGGCGGACCGGGCCGATCCCTAGCTTGCGCATTATGCCTCTCC
* * * *
13388496 GGCT-GGCTCAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGGTCATTCCCAG
66 GGCTCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
13388560 TCTAAGATCGGATCT-GATCGAGGGTTACGGC
131 TCTAAGATCGGATCTGGATCGAGGGTTACGGC
* * * * * * * *
13388591 AGTAGGATCAACAGCATGCAG-GGGTGGACCGGGCCGAT-CTTCGACTTGCGCATTCTGCCTCTC
1 AGCAGGATCGACAGCACGTAGAGGGCGGACCGGGCCGATCCCTAG-CTTGCGCATTATGCCTCTC
* * * * * * * *
13388654 C-GATCGACTGAGCACCCGCACG-TCCATTTCGTGGGTTGGCTAAGGCGTATGGAGTTTATT-CC
65 CGGCTCGGCTCAGCACCCGCACGCT-CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* ** * **
13388716 ATGTCTAAG-CCCCAGT-TGGACCGAGGGTTGTGGC
129 A-GTCTAAGATCGGA-TCTGGATCGAGGGTTACGGC
* * * *
13388750 AGCGGGA-CTGACAGCACGTAGA-GGCTGACCGGGTCGATCCC-AGGCTTGCGTATTATGCCTCT
1 AGCAGGATC-GACAGCACGTAGAGGGCGGACCGGGCCGATCCCTA-GCTTGCGCATTATGCCTCT
* * * * * * * *
13388812 TCAG-TCGGC-CAAGCGCCCTCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCT
64 CCGGCTCGGCTC-AGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * ** *
13388875 CAGTCTAAGATC--AGCTGGATTGAAGGTTGTGAC
128 CAGTCTAAGATCGGATCTGGATCGAGGGTTACGGC
* * * * ** * ** *
13388908 AGCAGGATTGATAGCACATA-AGGG-GGATCACGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCC
1 AGCAGGATCGACAGCACGTAGAGGGCGGACCGGGCCGATCCCTAGCTTGCGCATTATGCCTCTCC
* * * * * *
13388971 GACT-GGCTGAACACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCAAG
66 GGCTCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
13389035 TCTAAGATCGGATC
131 TCTAAGATCGGATC
13389049 AGACTGAGGG
Statistics
Matches: 469, Mismatches: 117, Indels: 61
0.72 0.18 0.09
Matches are distributed among these distances:
157 86 0.18
158 65 0.14
159 299 0.64
160 19 0.04
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (162 bp):
AGCAGGATCGACAGCACGTAGAGGGCGGACCGGGCCGATCCCTAGCTTGCGCATTATGCCTCTCC
GGCTCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCGGATCTGGATCGAGGGTTACGGC
Found at i:13389419 original size:26 final size:26
Alignment explanation
Indices: 13389361--13389410 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
13389351 TCATGGGTTG
*
13389361 GCTTAGGCATACGGAGTTAATTCCAT
1 GCTTAAGCATACGGAGTTAATTCCAT
*
13389387 GCTTAAGCATACGGAGTTCATTCC
1 GCTTAAGCATACGGAGTTAATTCC
13389411 CAGTCTAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (26 bp):
GCTTAAGCATACGGAGTTAATTCCAT
Found at i:13389591 original size:25 final size:26
Alignment explanation
Indices: 13389563--13389614 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13389553 GTTGGCTTAG
13389563 GCATAC-GAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13389588 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13389614 G
1 G
13389615 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 6 0.24
26 16 0.64
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13389770 original size:195 final size:196
Alignment explanation
Indices: 13389344--13389783 Score: 611
Period size: 194 Copynumber: 2.3 Consensus size: 196
13389334 GAGCCGGCAA
*
13389344 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTAATTCCATG-CTTAAGCATACGGAGTTCAT
1 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC-TAAGCATACGGAGTTCAT
* * * * * * *
13389408 TCCCAGTCTAAGATCGGACTGGACTGAAGGTTACAGCAGTAGGACTAGTAGTAGGATCGGCAGCA
65 TCCCAGTCTAAGATCGAACCGGACTGAAGGTTACAGCAGCAGGACCAGCAGCAGGATCGACAGCA
** *
13389473 CGAAGGGGGGAACGGGCTGATCCCCGACTTACACATTCTGCCTCTCCGGCCTGTTGAGCGCCCGC
130 CGAAGGGGGGAACGGGCCAATCCACGACTTACACATTCTGCCTCTCCGGCCTGTTGAGCGCCCGC
*
13389538 AT
195 AC
* * *
13389540 GCCCGTTTCCTAGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
*
13389604 CCCAGTCTAAGATCGAACCGGACTGAGGGTTAC-GACAGCAGGACCAGCA-CAGGATCGACAGCA
66 CCCAGTCTAAGATCGAACCGGACTGAAGGTTACAG-CAGCAGGACCAGCAGCAGGATCGACAGCA
* * * * *
13389667 CGTAGGGGGGATCGGGCCAATCCACGGCTTGCGCATTCTGCCTCTCCGGCC-GATTGAGCGCCCG
130 CGAAGGGGGGAACGGGCCAATCCACGACTTACACATTCTGCCTCTCCGGCCTG-TTGAGCGCCCG
13389731 CAC
194 CAC
* *
13389734 GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
13389784 ACCCAGCCAG
Statistics
Matches: 215, Mismatches: 25, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
193 1 0.00
194 94 0.44
195 93 0.43
196 27 0.13
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (196 bp):
GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCGAACCGGACTGAAGGTTACAGCAGCAGGACCAGCAGCAGGATCGACAGCAC
GAAGGGGGGAACGGGCCAATCCACGACTTACACATTCTGCCTCTCCGGCCTGTTGAGCGCCCGCA
C
Found at i:13389919 original size:171 final size:171
Alignment explanation
Indices: 13389588--13390215 Score: 535
Period size: 171 Copynumber: 3.8 Consensus size: 171
13389578 CCATGTCTAA
* * * * * ** *
13389588 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTACGACAGCAGGACC-AGC
1 GCATACGGAGTTCATTCCCAGTCTAAGACCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCGA-C
* * * * * *
13389652 -ACAGGATCGACAGCACGTAG-GGGGGATCGGGCCAATCCACGGCTTGCGCATTCTGCCTCTCCG
65 AACGGGATCGACAGCACGCAGAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCG
* *
13389715 GCCGATTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
130 GCCGACTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAG
13389757 GCATACGGAGTTCATT-CCATGTCTAAGACCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGACCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCGAC
** * *
13389821 AACGGGATCGGTAGCACGCAGAGGGGGATCAGACCGATCCCCGGCTTGTGCATTATGCCTCTCCG
65 AACGGGATCGACAGCACGCAGAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCG
* * * * *
13389886 GCCGACTCAACGCCCGTACGTTCATTTCGTGGGTTGACTTAT
130 GCCGACTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAG
* * * * *
13389928 GCATATGGAGTTCATTCCCAGTCTAAGA-TCGGACCAGACCGAGCG-T-T-GC-G-A-TA--G--
1 GCATACGGAGTTCATTCCCAGTCTAAGACCCAG-CCAGACCGAGGGTTGTGGCAGCAGGACCGAC
* * * * * * * *
13389982 TA--GGATCGACAGCACGTAGGGGGGGA-CTAGGTCGAACCCCGACTTGCACATTCTGCCTCTCC
65 AACGGGATCGACAGCACGCAGAGGGGGATC-AGGCCGATCCCCGGCTTGCGCATTATGCCTCTCC
** *
13390044 GGTAGACTGAGCGCCC-TCACGCTCGTTTCGTGGGTTGGCTTAG
129 GGCCGACTGAGCGCCCGT-ACGCTCATTTCGTGGGTTGGCTTAG
* * ** * ** *
13390087 GCATACGAAGATCATT-CCATGTCTAA-ACCCCAGCTGGACTGAGGGTTGTGGTGGCAGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGA-CCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCGA
* * * * **
13390150 CAGCGGGATC-AGCTGCATGCAGAGGGGGATCAGGCTGATCCCCGGCTTATGCATTATGCCTCTC
64 CAACGGGATCGA-CAGCACGCAGAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTC
13390214 CG
128 CG
13390216 ATTGGCCTCT
Statistics
Matches: 359, Mismatches: 75, Indels: 48
0.74 0.16 0.10
Matches are distributed among these distances:
158 6 0.02
159 107 0.30
160 3 0.01
161 2 0.01
162 1 0.00
163 2 0.01
164 1 0.00
165 2 0.01
166 1 0.00
167 2 0.01
168 5 0.01
169 51 0.14
170 21 0.06
171 151 0.42
172 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (171 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCGACA
ACGGGATCGACAGCACGCAGAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGG
CCGACTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAG
Found at i:13390077 original size:330 final size:329
Alignment explanation
Indices: 13389654--13391093 Score: 982
Period size: 330 Copynumber: 4.2 Consensus size: 329
13389644 GGACCAGCAC
* * * * *
13389654 AGGATCGACAGCACGTA-GGGGGGATCGGGCCAATCCACGGCTTGCGCATTCTGCCTCTCCGGCC
1 AGGATCGACAGCACGTAGGGGGGGATAGGTCGAA-CCCCGACTTGCGCATTCTGCCTCTCCGGCC
*
13389718 GATTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
65 GACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
13389783 GACCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCGACAACGGGATCGGTAGCACGCAGAGGGGG
130 GACCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCGACAACGGGATCGGTAGCATGCAGAGGGGG
* *
13389848 ATCAGACCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGACTCAACGCCCGTACGTTCATTT
195 ATCAGACCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGACTCAACGCCCGCACGCTCATTT
* *
13389913 CGTGGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGCGTTGCG
260 CGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGCGTTGCG
13389978 ATAGT
325 ATAGT
* **
13389983 AGGATCGACAGCACGTAGGGGGGGACTAGGTCGAACCCCGACTTGCACATTCTGCCTCTCCGGTA
1 AGGATCGACAGCACGTAGGGGGGGA-TAGGTCGAACCCCGACTTGCGCATTCTGCCTCTCCGGCC
* * * *
13390048 GACTGAGCGCCCTCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGATCATTCCATGTCTAA
65 GACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
** * ** * * *
13390113 -ACCCCAGCTGGACTGAGGGTTGTGGTGGCAGGACCGGCAGCGGGATCAGCT-GCATGCAGAGGG
130 GA-CCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCGACAACGGGATC-GGTAGCATGCAGAGGG
* * * * *
13390176 GGATCAGGCTGATCCCCGGCTTATGCATTATGCCTCTCCGATTGGCCTCTACGGCCGACTGAGCG
193 GGATCAGACCGATCCCCGGCTTGTGCATTATG-----CC---T---CTC--CGGCCGACTCAACG
* * * * *
13390241 CCCGCACACTCATTTCTTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGA
245 CCCGCACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG-AT-CAGA
* ** * *
13390306 GTTCATTCCCAGTCTAAGATTG-GATGGGACT
308 --CCAGACCGAG-C---G-TTGCGAT---AGT
* ** * * *
13390337 GAGGGTTGCGACAGCATGATTCGTAGCACGCAGGGGGGAATCTGACTGATCCCCGACTTGTGCAT
1 -A-GGAT-CGACAGC---A--CGT---A-G--GGGGGG-ATAGGTC-GAACCCCGACTTGCGCAT
* * * ** *
13390402 TCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTCACGGGTTGGCTTAGGCATAGGGAGT
50 TCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
* * * * ** * *
13390467 TCATTCCATGTGTAAGCCCCAGTCGGATTGAGGGCTGCGGCAGCA-GA---ATC-A----A-C--
115 TCATTCCATGTCTAAGACCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCGA-CAACGGGATCGG
* * * * * * * * * * * *
13390520 -AGCATACAG-GGGGGACCGGGCCGGTCCCCGGCTTGTGCATTTTGCCTTTTCGACCGGCTGAGC
179 TAGCATGCAGAGGGGGATCAGACCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGACTCAAC
13390583 GCCCGCACGCTCATTTCGTGGGTTGGCTGAGGCATACGGAGTTCATTTCGTGTCTAACCATACGG
244 GCCCGCACGCTCATTTCGTGGG-T---T---G---AC----TT-A-----TG------CATACGG
* * **
13390648 AGTTCATTCCCAGTCTAAGATCAGACC-GATCCAAGGGTTGCGGCAGT
283 AGTTCATTCCCAGTCTAAGATCAGACCAGA-CCGAGCGTTGCGATAGT
* * * * *
13390695 AGGACCAAGACAGGATCGACAGCACGCAGGGGGGAT-CGTGCCAATCCACCG-CTTGCGTATTCT
1 AGGATC--GACA-G--C-AC-GTA-G--GGGGGGATAGGT-CGAA-CC-CCGACTTGCGCATTCT
* * * * *
13390758 ACCTCTCCGGTCGATTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCTTACGGAGTTCA
53 GCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
* *
13390823 TTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCGGCAACGGGATCGGTAGC
118 TTCCATGTCTAAGACCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCGACAACGGGATCGGTAGC
* * ** * *
13390888 ATGCAGAAGGTGATC-GAACCGATCCCCGGCTTGCACATTATGCCTCTCTGGCCGGCTCAACGCC
183 ATGCAGAGGGGGATCAG-ACCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGACTCAACGCC
* * * *
13390952 CGCACGTTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGG
247 CGCACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * *
13391017 ACCGAGAGTTGTGGTAGT
312 ACCGAGCGTTGCGATAGT
* * *
13391035 AGGATCGACAGCACATA-GGGGGGACCAGGTCGAACCCCGACTTGCACATTCTGCCTCTC
1 AGGATCGACAGCACGTAGGGGGGGA-TAGGTCGAACCCCGACTTGCGCATTCTGCCTCTC
13391094 GATCATGGGT
Statistics
Matches: 855, Mismatches: 152, Indels: 208
0.70 0.13 0.17
Matches are distributed among these distances:
328 3 0.00
329 43 0.05
330 173 0.20
331 10 0.01
333 1 0.00
334 2 0.00
335 3 0.00
337 1 0.00
338 5 0.01
340 51 0.06
341 5 0.01
343 92 0.11
344 3 0.00
345 4 0.00
346 2 0.00
347 7 0.01
348 2 0.00
350 1 0.00
351 7 0.01
352 7 0.01
353 106 0.12
354 18 0.02
355 2 0.00
356 38 0.04
357 23 0.03
358 6 0.01
359 1 0.00
360 6 0.01
361 4 0.00
362 5 0.01
363 1 0.00
365 16 0.02
366 60 0.07
367 4 0.00
368 13 0.02
369 130 0.15
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (329 bp):
AGGATCGACAGCACGTAGGGGGGGATAGGTCGAACCCCGACTTGCGCATTCTGCCTCTCCGGCCG
ACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
ACCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCGACAACGGGATCGGTAGCATGCAGAGGGGGA
TCAGACCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGACTCAACGCCCGCACGCTCATTTC
GTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGCGTTGCGA
TAGT
Found at i:13390307 original size:26 final size:26
Alignment explanation
Indices: 13390271--13390323 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13390261 GTTGACTTAG
13390271 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13390297 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13390323 G
1 G
13390324 ATTGGATGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13390663 original size:26 final size:26
Alignment explanation
Indices: 13390615--13390665 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13390605 TTGGCTGAGG
* **
13390615 CATACGGAGTTCATTTCGTGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
13390641 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
13390666 GATCAGACCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:13391214 original size:26 final size:26
Alignment explanation
Indices: 13391112--13391216 Score: 113
Period size: 26 Copynumber: 4.0 Consensus size: 26
13391102 GTTGGCTTAG
* *
13391112 GCATACGGAGTTCATT-CCATGGCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13391138 GCATACAGAGTTCATTCCCAGTCTAG
1 GCATACAGAGTTCATTCCCAGTCTAA
* * * *
13391164 GCATTCAAAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
13391190 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13391216 G
1 G
13391217 ATCGGATCAG
Statistics
Matches: 64, Mismatches: 14, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
26 61 0.95
27 3 0.05
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13391585 original size:159 final size:159
Alignment explanation
Indices: 13391190--13391692 Score: 525
Period size: 159 Copynumber: 3.2 Consensus size: 159
13391180 CCCAATCTAA
* *
13391190 GCATACGGAGTTCATTCCTA-GTCTAAGATCGGATCAGACCGAGGGTTGCGGGAGCAAGATCGAC
1 GCATACGGAGTTCATTCCTAGGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAAGATCGAC
* * * * *
13391254 AGCACGCA-GGGGGGAATGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCA
66 AGCACGCAGGGGGGGACT-GGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCG
* * * * *
13391318 CCCGCATGCCCGTTTCGTGGGTTGGCTTAG
130 CCCGTACGCTCGTTTCATGGGTTGACTTAG
* * ** * * ** *
13391348 GCATAGGGAGTTCATT-TTAGGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCTAGGTCTAAG-ATCAGATCAGACCGAGGGTTGCGGCAGCAAGATCGA
* ** * * *
13391411 CAGCACGCAGAGGGGGACTGCGTCGATCCCCGACTTAAGCATTATGCCTTTTCGGTCGGCTCAGC
65 CAGCACGCAGGGGGGGACTG-GTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGCTGAGC
*
13391476 GCCCGTACGCTCGTTTCATGGGTTGACTTAT
129 GCCCGTACGCTCGTTTCATGGGTTGACTTAG
* * * *
13391507 GCATACGGAGTTCATTCCTA-GTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAAGATCGAC
1 GCATACGGAGTTCATTCCTAGGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAAGATCGAC
* * * * ** *
13391571 AGCACGAAGGGGGGGACCAGGCCGATCCCCGACTTGCCCATTCTGCCTCTTCGACCGGTTGAGCG
66 AGCACGCAGGGGGGGA-CTGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCG
* * *
13391636 CTCGTACGCTAGTTTCATTGGTTAGA-TTAG
130 CCCGTACGCTCGTTTCATGGGTT-GACTTAG
*
13391666 GCATACGGAGTTCATTCC-ATGTCTAAG
1 GCATACGGAGTTCATTCCTAGGTCTAAG
13391693 CATACGGAGT
Statistics
Matches: 278, Mismatches: 58, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 60 0.22
159 210 0.76
160 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCTAGGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAAGATCGAC
AGCACGCAGGGGGGGACTGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGC
CCGTACGCTCGTTTCATGGGTTGACTTAG
Found at i:13392417 original size:26 final size:26
Alignment explanation
Indices: 13392387--13392439 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13392377 GTTGACTTAG
*
13392387 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
*
13392413 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
13392439 G
1 G
13392440 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:13392911 original size:157 final size:153
Alignment explanation
Indices: 13392413--13392911 Score: 475
Period size: 157 Copynumber: 3.2 Consensus size: 153
13392403 CCCAGTCTAA
* *
13392413 GCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGGACTGAGGGTTGCTGCAGTAGGACCGGCA
1 GCATACGGAGTTCATT-CCAGCCTAAGATCAGACCGGACCGAGGGTTGC-GTAGTAGGA-CGGCA
* * *
13392478 GCACACAGGGGGGATCGGGTCGATCCCGACTTGCGCTTTCTACCTCTCC-AGCCGACTGAGTGCC
63 GCACGCA-GGGGGATCGGGTCGATCCCGGCTTGCGCATTCTACCTCTCCGA-CCGACTGAGTGCC
*
13392542 CGCACGCCCGTTTCGTGGGTTGGCTTAG
126 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** ** * **
13392570 GCATAGGGAGTTCATTCCATGTCTATGCCCCAG-CTAGACCGAGGGTTGTGGTAACAGGACTGGC
1 GCATACGGAGTTCATTCCA-GCCTAAG-ATCAGACCGGACCGAGGGTTG-CGTAGTAGGAC-GGC
* * * * *
13392634 AGCACGCAGAGGGGGA-CTGGGCCGATCCCCGG-TTGCGCATTATGCCTCTCCGACCGGCTCAGT
62 AGCACGC--AGGGGGATC-GGGTCGAT-CCCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGT
** * *
13392697 GCCCTTACGCTCGTTTCATGGGTTGACTTAG
123 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * **
13392728 GCTTACGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGTAGGATCGATA
1 GCATACGGAGTTCA-TTCCAGCCTAAGATCAGACCGGACCGAGGGTTGCG-TAGTAGGA-CGGCA
* * * * *
13392793 GCACGCAGGGGGATCAGGTTGGTCCTCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGCTC
63 GCACGCAGGGGGATCGGGTCGATCC-CGGCTTGCGCATTCTACCTCTCCGACCGACTGAGTGCCC
*
13392858 GCACGCTCATTTCGTGGGTTGGCTTAG
127 GCACGCTCGTTTCGTGGGTTGGCTTAG
*
13392885 GCATAGGGAGTTCATTCCATGCCTAAG
1 GCATACGGAGTTCATTCCA-GCCTAAG
13392912 CATATGGAGT
Statistics
Matches: 269, Mismatches: 56, Indels: 34
0.75 0.16 0.09
Matches are distributed among these distances:
155 2 0.01
156 23 0.09
157 121 0.45
158 111 0.41
159 12 0.04
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (153 bp):
GCATACGGAGTTCATTCCAGCCTAAGATCAGACCGGACCGAGGGTTGCGTAGTAGGACGGCAGCA
CGCAGGGGGATCGGGTCGATCCCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGTGCCCGCAC
GCTCGTTTCGTGGGTTGGCTTAG
Found at i:13393578 original size:159 final size:159
Alignment explanation
Indices: 13393369--13393780 Score: 395
Period size: 159 Copynumber: 2.6 Consensus size: 159
13393359 GGCCAATTCT
* * * * * * *
13393369 CGGCTTACGCATTCTGCCTCTCC-AGCCAACTAAGCACCCGCACGCCCGTTTTGTGGGTTGGCTT
1 CGGCTTGCGCATTATGCCTCTCCGA-CCGACTAAGCGCCTGCACGCTCGTTTTGTGGGTTGACTT
* * *
13393433 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-TCAGA-CTGAGGGTTGTGGCAGCGGGATC
65 AGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGACCAGATC-GAGGGTTGTGGCAGCAGGATC
** * *
13393496 GGTAGCACGCA-GAGGAGGACCGAGCCGATCCT
128 GACAGCACGCACGAGG-GGACCGAGCCGAACCC
* * * **
13393528 CGGCTTGCGCATTATGCCTCTTCGATCGGCTCAA-CGCCTGCACGCTCGTTTAATGGGTTGACTT
1 CGGCTTGCGCATTATGCCTCTCCGACCGACT-AAGCGCCTGCACGCTCGTTTTGTGGGTTGACTT
* * * **
13393592 ATGCATACAGAGTACATTCCCA-GTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAGGATCG
65 AGGCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCAGATCGAGGGTTGTGGCAGCAGGATCG
* * * **
13393656 ACAGCACGTACGAGGGGATCGGGTTGAACCC
129 ACAGCACGCACGAGGGGACCGAGCCGAACCC
* * * * * * *
13393687 CGGCTTGTGCATTCTGCCTCTCCGGCCGACTAAGCGCCTGAACACTCATTTTGTGGGTTGACCTA
1 CGGCTTGCGCATTATGCCTCTCCGACCGACTAAGCGCCTGCACGCTCGTTTTGTGGGTTGACTTA
*
13393752 GGCATATGGAGTTCATTCCATGTCTAAGC
66 GGCATACGGAGTTCATTCCATGTCTAAGC
13393781 ATACGGAGTT
Statistics
Matches: 199, Mismatches: 46, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
158 7 0.04
159 181 0.91
160 11 0.06
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (159 bp):
CGGCTTGCGCATTATGCCTCTCCGACCGACTAAGCGCCTGCACGCTCGTTTTGTGGGTTGACTTA
GGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAGATCGAGGGTTGTGGCAGCAGGATCGAC
AGCACGCACGAGGGGACCGAGCCGAACCC
Found at i:13393789 original size:26 final size:26
Alignment explanation
Indices: 13393753--13393805 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13393743 GTTGACCTAG
*
13393753 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13393779 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13393805 G
1 G
13393806 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13394875 original size:159 final size:158
Alignment explanation
Indices: 13394513--13394897 Score: 409
Period size: 159 Copynumber: 2.4 Consensus size: 158
13394503 CACAGTCTAA
* * *
13394513 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCGATAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACA
* * * * * * *
13394578 GCATGCAGGAGGGACTGGGCCGATCCTCGGCATGCGCATTCTGCCTCTCTAGCGTGCTGAGCGCC
66 GCATGCAGGAGGGACTAGGCCGATCCCCAGCATGCGCATTATGCCTCTCCAGCGTGCTCAGCACC
* *
13394643 CACACACCCATTTCGTGGGTTGGCTTAG
131 CACACACCCATTTCATGGGTTGACTTAG
* *** * *
13394671 GCATAGGGAGTTCATT-CCATGTCTAATCCCTAG-CCGGACCGAGGGTTGTGATAGCAGGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCGAGGGTTGCGATAGCAGGATCGA
* * * *
13394734 TAGCATGCAGAGGGGGA-TCAGGCCGATCCCCAGCTTGCGCATTATGCGTCTCCAGTCG-GCTCA
64 CAGCATGCAG-GAGGGACT-AGGCCGATCCCCAGCATGCGCATTATGCCTCTCCAG-CGTGCTCA
* * *
13394797 GCACCCGCACGCTCATTTCATGGGTTGACTTAG
126 GCACCCACACACCCATTTCATGGGTTGACTTAG
* * * * * * *
13394830 GCATACAGAGTTCATTCCCAGTTTAAGATCGGACCAGACCAAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACA
13394895 GCA
66 GCA
13394898 CGTAGGGGGT
Statistics
Matches: 181, Mismatches: 39, Indels: 13
0.78 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 59 0.33
159 115 0.64
160 5 0.03
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACA
GCATGCAGGAGGGACTAGGCCGATCCCCAGCATGCGCATTATGCCTCTCCAGCGTGCTCAGCACC
CACACACCCATTTCATGGGTTGACTTAG
Found at i:13395636 original size:157 final size:157
Alignment explanation
Indices: 13395210--13395688 Score: 475
Period size: 158 Copynumber: 3.0 Consensus size: 157
13395200 CCCAATCTAA
* *** * *
13395210 GCATATGGAGTTCATTCCCAATCCCAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATAGGGAGTTCATTCCCAATTTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * * * *
13395275 GCATGCAGGGGGGACCAGACCGATCCCTAGCTTACGAATTCTGCCTCTCCGACTGGCTAAGCGCC
66 GCACGCAGGGGGGACCAGGCTGATCCCCAGCTTGCGCATTCTTCCTCTTCGACCGACTAA-CGCC
* * *
13395340 CGTATGCCCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * * *
13395368 GCATAGGGAGTTCATT-CC-ATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGCGGGACCG
1 GCATAGGGAGTTCATTCCCAAT-T-TAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCG
* *
13395430 ACAGCACGCAGAGGGGGACCAGGCTGATCCCCAGTTTGCGCATTATTCCTCTTCGACCGACTCAA
63 ACAGCACGCAG-GGGGGACCAGGCTGATCCCCAGCTTGCGCATTCTTCCTCTTCGACCGACT-AA
* *
13395495 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
13395527 GCATA-GGAGTTCATTCCCAATTTAAGATCAGACCGGACAGATGGTTGCGGTAGTAGGATCGAGA
1 GCATAGGGAGTTCATTCCCAATTTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *
13395591 GCACACAGGGGGGACCGGGCTGATCCCC-GACTTGCGCATTCTTCCTCTTCGACC-AGCTGAGCG
66 GCACGCAGGGGGGACCAGGCTGATCCCCAG-CTTGCGCATTCTTCCTCTTCGACCGA-CT-AACG
* * *
13395654 CCTGCACGCTCGCTTCGTCGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
13395684 GCATA
1 GCATA
13395689 CAAAGTTCAT
Statistics
Matches: 260, Mismatches: 51, Indels: 21
0.78 0.15 0.06
Matches are distributed among these distances:
156 4 0.02
157 81 0.31
158 94 0.36
159 77 0.30
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATAGGGAGTTCATTCCCAATTTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCAGGCTGATCCCCAGCTTGCGCATTCTTCCTCTTCGACCGACTAACGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13396444 original size:26 final size:26
Alignment explanation
Indices: 13396393--13396445 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13396383 GTTGACTTAG
*
13396393 GCATACGGAGTTCATCCCCAGGCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* * *
13396419 GCATGCGGAGTTCATTCTCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
13396445 G
1 G
13396446 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:13396772 original size:26 final size:26
Alignment explanation
Indices: 13396743--13396834 Score: 132
Period size: 26 Copynumber: 3.5 Consensus size: 26
13396733 AGGCATACGA
**
13396743 AGTTCATCCCCAGTTTCAACATACAG
1 AGTTCATCCCCAGTTTCAACATATGG
13396769 AGTTCATCCCCAGTTTCAACATATGG
1 AGTTCATCCCCAGTTTCAACATATGG
*
13396795 AGTTCATCCCTAGTTT-AAGCATATGG
1 AGTTCATCCCCAGTTTCAA-CATATGG
*
13396821 AGTTCATTCCCAGT
1 AGTTCATCCCCAGT
13396835 CTAAGATCGG
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
25 2 0.03
26 58 0.97
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (26 bp):
AGTTCATCCCCAGTTTCAACATATGG
Found at i:13398820 original size:27 final size:27
Alignment explanation
Indices: 13398782--13398838 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
13398772 CAATTACCTG
13398782 AAGAAGGGCAAACTGGCTGCTGTAGAC
1 AAGAAGGGCAAACTGGCTGCTGTAGAC
13398809 AAGAAGGGCAAACTGGCTGCTGTAGAC
1 AAGAAGGGCAAACTGGCTGCTGTAGAC
13398836 AAG
1 AAG
13398839 GGCAGCAAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.35, C:0.18, G:0.33, T:0.14
Consensus pattern (27 bp):
AAGAAGGGCAAACTGGCTGCTGTAGAC
Found at i:13403757 original size:158 final size:158
Alignment explanation
Indices: 13403483--13403790 Score: 402
Period size: 158 Copynumber: 1.9 Consensus size: 158
13403473 GATCAGACTA
* *
13403483 GACTGAGGGTTGTGGTAGCAGGATCGGTAGCACGCAGAGGGGACCAGGCCAATCCCCGACTTGCG
1 GACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGACCAGGCCAATCCCCGACTTGCG
* * * * *
13403548 CATTCTACCTCTCCGATCGAGTGAGCGCCCGCACGCCCGTTTCGTGTGTTGGCTTAGGCATAGGG
66 CATTCTACCTCTCCGATCAACTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGG
13403613 AGTTCATTCCATGTCTAAGCCCCAACCG
131 AGTTCATTCCATGTCTAAGCCCCAACCG
* * * * * * *
13403641 GACTGAGGGTTGTGGCAGCGGGATTGGCAGCACGCAGAGGGGGACCGGGTCGATCCCTGGCTTGC
1 GACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGA-GGGGACCAGGCCAATCCCCGACTTGC
* * * ** ** *
13403706 GCATTCTGCCTTTCCGGTCAACTGAGCGCCCG-TTGCTTATTTTGTGGGTTGGCTTAGGCATACG
65 GCATTCTACCTCTCCGATCAACTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACG
13403770 GAGTTCATTCCATGTCTAAGC
130 GAGTTCATTCCATGTCTAAGC
13403791 ATACGGAGTT
Statistics
Matches: 127, Mismatches: 22, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
158 79 0.62
159 48 0.38
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (158 bp):
GACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGACCAGGCCAATCCCCGACTTGCG
CATTCTACCTCTCCGATCAACTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCCCCAACCG
Found at i:13403799 original size:26 final size:26
Alignment explanation
Indices: 13403763--13403814 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13403753 GTTGGCTTAG
13403763 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
13403789 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
13403815 TAGTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:13404860 original size:26 final size:26
Alignment explanation
Indices: 13404824--13404873 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13404814 GTTGGTTTAG
13404824 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
13404850 GCATACGGAGTTCATTCCATGTCT
1 GCATACAGAGTTCATTCCATGTCT
13404874 GAGCGCCCGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:13405795 original size:26 final size:26
Alignment explanation
Indices: 13405765--13405817 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13405755 GTTGGCTTAG
13405765 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13405791 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13405817 G
1 G
13405818 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13406182 original size:26 final size:26
Alignment explanation
Indices: 13406145--13406197 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13406135 GCTGACTTAG
13406145 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
13406171 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
13406197 G
1 G
13406198 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13406625 original size:158 final size:156
Alignment explanation
Indices: 13406171--13406670 Score: 490
Period size: 158 Copynumber: 3.2 Consensus size: 156
13406161 CCCAGTCTAA
* * *
13406171 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATTGACA
1 GCATA-AGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATTGACA
* * *
13406236 GCTCGCA-GGGGGACCAGG-CTGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCGC
65 GCACGCAGGGGGGACCAGGTC-GAT-CCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGC
*
13406299 CCGCATGCCCGTTTCGTGGGTTGGCTTAG
128 CCGCATGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
13406328 CCATAGGGAGTTCATT-CCATGTCTACG-TCCCA-ATCGGACCGAGGGTTGTGGTAGCGGGATTG
1 GCATA-AGAGTTCATTCCCA-GTCTAAGAT--CAGACCGGACCGAGGGTTGCGGTAGCAGGATTG
* * * * * * *
13406390 ACAGCACGCAGAGGGGGACCGGGTCGATCCCAGACTTACGCATTATGCCTCTCCGACTGGCTCAA
62 ACAGCACGCAG-GGGGGACCAGGTCGATCCCAG-CTTGCGCATTCTGCCTCTCCGACCGACTGAG
* *
13406455 CG-CCGAATGCTCGTTTCGTGGGTTGACTTAG
125 CGCCCGCATGCTCGTTTCGTGGGTTGGCTTAG
* * * *
13406486 GCATATAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACC
1 GCATA-AGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATTGACA
* * * * * * * **
13406551 GAACGTAGGGGGGATCTGGTCGGTACCCAGCTTGCGCGTTCTACCTCTTTGACCGACTGAGCGCC
65 GCACGCAGGGGGGACCAGGTCGAT-CCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCC
* * *
13406616 CGCACGCTCGTTTCGCGGGTTGGTTTAG
129 CGCATGCTCGTTTCGTGGGTTGGCTTAG
* *
13406644 GCATACGAAGTTCATTCCAAGTCTAAG
1 GCATAAG-AGTTCATTCCCAGTCTAAG
13406671 CAAACGGAGT
Statistics
Matches: 274, Mismatches: 56, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
156 4 0.01
157 91 0.33
158 135 0.49
159 43 0.16
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATAAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATTGACAG
CACGCAGGGGGGACCAGGTCGATCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCG
CATGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13407233 original size:26 final size:26
Alignment explanation
Indices: 13407183--13407234 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13407173 GTTGGCTTAG
*
13407183 GCAAACGGAGTTCATTCCATGTCTAA
1 GCAAACGGAGTTCATTCCATATCTAA
13407209 GCAAACGGAGTTCATTCCCA-ATCTAA
1 GCAAACGGAGTTCATT-CCATATCTAA
13407235 TAGTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (26 bp):
GCAAACGGAGTTCATTCCATATCTAA
Found at i:13407940 original size:26 final size:26
Alignment explanation
Indices: 13407903--13407955 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13407893 GTTGACTTAG
*
13407903 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13407929 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13407955 G
1 G
13407956 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13408443 original size:25 final size:26
Alignment explanation
Indices: 13408403--13408454 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
13408393 GTTGGCTTAG
13408403 GCATACGAAATTCATT-CCATGTCTAA
1 GCATACGAAATTCATTCCCA-GTCTAA
*
13408429 GCATAC-AAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
13408454 G
1 G
13408455 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:13410554 original size:26 final size:26
Alignment explanation
Indices: 13410518--13410570 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13410508 GTTGACTTAG
13410518 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
13410544 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13410570 G
1 G
13410571 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13410589 original size:368 final size:343
Alignment explanation
Indices: 13410084--13410887 Score: 899
Period size: 368 Copynumber: 2.3 Consensus size: 343
13410074 GGTCGATCTC
* * * * * * *
13410084 CGGCATACGGATTCTGCCTCTCCGACCGGCTAAGCGCCTGTTCGCTCGTTTCGTGGGTTGGCTTA
1 CGGCTTACGCATTATGCCTCTCCGACCGGCTAAGCGCCCGTACACTCGTTTCGTGGGTTGACTTA
* * * *
13410149 GGCATACAGAGTTCATTCC-ATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATTGG
66 GGCATACGGAGTTCATTCCTA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAG
* * *
13410213 ATCGAGGGTTACGGTAGCAGGACCAGCAGTAGGATCGGTAACACGTAGGTGGGGATCGGGCCAAT
130 ACCGAGGGTTACGGTAGCA-G----G-A-T----T-GGTAACACGCAGGT-GGGATCGAGCCAAT
* * * * * *
13410278 CCCCGGCTTGCACATTTTACCTTTCTGGCGGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGC
182 CCCCGGCTTGCACATTCTACCTCTCCGGCCGACTGAGCACCCGCACACTCGTTTCATGGGTTGGC
* * *
13410343 TTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCCAGGGTTGTGGTAGCAGGACC
247 TTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAGC-GG---
* *
13410408 AGTAACGGAATCGACAGCATGCAGAGGGGGACCGGGCTGATCCT
308 -G--AC---AT-G-CAGCACGCAGAAGGGGACCGGGCTGATCCT
* * *
13410452 CGGCTTACGCATTATGCCTCTCCGACCGACTGAGCACCCGTACACTCGTTTCGTGGGTTGACTTA
1 CGGCTTACGCATTATGCCTCTCCGACCGGCTAAGCGCCCGTACACTCGTTTCGTGGGTTGACTTA
* *
13410517 GGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGA
66 GGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGA
* * * **
13410582 CCGAGGGTTGCGGTAGCAGGATTGGTAGCACGCAGGTTGGATCGAGCTGATCCCCGGCTTGCACA
131 CCGAGGGTTACGGTAGCAGGATTGGTAACACGCAGGTGGGATCGAGCCAATCCCCGGCTTGCACA
** * *
13410647 TTCTACCTCTCCGGCCGACTGAGCACCCGCACTTTCGTTTCGTGGGTTGGCTTAGGCATAGGGAG
196 TTCTACCTCTCCGGCCGACTGAGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* * *
13410712 TTCATTCCATGTCTAAGCCCCAGCCGGATCAAGGGTTGTGGCAGCGGGACCTGCAGCACGCAGAA
261 TTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAGCGGGACATGCAGCACGCAGAA
* *
13410777 GGGGATCGGGCTGATCGT
326 GGGGACCGGGCTGATCCT
* * ** * *
13410795 CGGCTTGCGCATTATGCCTCTTCGGTCGGCTTAGTGCCCGTACACTCGTTTCGTGGGTTGACTTA
1 CGGCTTACGCATTATGCCTCTCCGACCGGCTAAGCGCCCGTACACTCGTTTCGTGGGTTGACTTA
**
13410860 TCCATACGGAGTTCATTCCTAGTCTAAG
66 GGCATACGGAGTTCATTCCTAGTCTAAG
13410888 ATCAGACCAG
Statistics
Matches: 380, Mismatches: 55, Indels: 27
0.82 0.12 0.06
Matches are distributed among these distances:
343 108 0.28
344 1 0.00
345 1 0.00
348 2 0.01
350 1 0.00
354 2 0.01
355 119 0.31
356 12 0.03
357 1 0.00
361 1 0.00
362 1 0.00
363 1 0.00
367 1 0.00
368 128 0.34
369 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (343 bp):
CGGCTTACGCATTATGCCTCTCCGACCGGCTAAGCGCCCGTACACTCGTTTCGTGGGTTGACTTA
GGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGA
CCGAGGGTTACGGTAGCAGGATTGGTAACACGCAGGTGGGATCGAGCCAATCCCCGGCTTGCACA
TTCTACCTCTCCGGCCGACTGAGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAGCGGGACATGCAGCACGCAGAA
GGGGACCGGGCTGATCCT
Found at i:13410853 original size:159 final size:160
Alignment explanation
Indices: 13410544--13411048 Score: 477
Period size: 159 Copynumber: 3.2 Consensus size: 160
13410534 CCTAGTCTAA
* * * * * * ** *
13410544 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACTAGACCGAGGGTTGCGGTAGCAGGATTGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCAAGGGTTGTGGCAGCAGGACCGA
* * * * * * * *
13410607 TAGCACGCAG--GTTGGATCGAGCTGATCCCCGGCTTGCACATTCTACCTCTCCGGCCGACTGAG
65 CAGCACGCAGAAG-GGGATCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTGAG
* * **
13410670 CACCCGCACTTTCGTTTCGTGGGTTGGCTTAG
129 CGCCCGTACACTCGTTTCGTGGGTTGGCTTAG
* * * * *
13410702 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGATCAAGGGTTGTGGCAGCGGGACCTG-
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTGTGGCAGCAGGACC-GA
* * ** * * * * *
13410765 CAGCACGCAGAAGGGGATCGGGCTGATCGTCGGCTTGCGCATTATGCCTCTTCGGTCGGCTTAGT
65 CAGCACGCAGAAGGGGATCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGC
* *
13410830 GCCCGTACACTCGTTTCGTGGGTTGACTTAT
130 GCCCGTACACTCGTTTCGTGGGTTGGCTTAG
* * * *
13410861 CCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAGACCAAGGGTTGTGGCAGCAGGACCGA
* ** * *
13410924 CAGCACGTAGTGGGGGATCGAGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGC
65 CAGCACGCAGAAGGGGATCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGC
* * *
13410989 GCCCGTACCCTCATTTCATGGGTTGGCTTAG
130 GCCCGTACACTCGTTTCGTGGGTTGGCTTAG
13411020 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
13411049 TACGGAGTTC
Statistics
Matches: 276, Mismatches: 61, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 55 0.20
159 215 0.78
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTGTGGCAGCAGGACCGAC
AGCACGCAGAAGGGGATCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCG
CCCGTACACTCGTTTCGTGGGTTGGCTTAG
Found at i:13411069 original size:26 final size:26
Alignment explanation
Indices: 13411020--13411069 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
13411010 GTTGGCTTAG
*
13411020 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAGGTCTAA
*
13411046 GCATACGGAGTTCATTCCCGGTCT
1 GCATACGGAGTTCATTCCAGGTCT
13411070 GAGATTTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAGGTCTAA
Found at i:13411771 original size:26 final size:26
Alignment explanation
Indices: 13411741--13411793 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13411731 GTTGACTTAG
*
13411741 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
13411767 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
13411793 G
1 G
13411794 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:13412440 original size:159 final size:156
Alignment explanation
Indices: 13412275--13412625 Score: 355
Period size: 157 Copynumber: 2.2 Consensus size: 156
13412265 CGCACACCCG
* * *
13412275 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAA-GGT
1 TTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCA-GTCTAAGACCAAACCGGACC-AAGGGT
* * * * ** *
13412339 TATGGCAACGAGACCGATAGCATGCAGAGAGGGACCGGGCCGATCCCCGGCTTACGTATTATGCC
64 TACGGCAACAACACCGACAGCACCCAG-G-GGGACCGAGCCGATCCCCGGCTTACGTATTATGCC
* * *
13412404 TCTCCGATCGGCTCAATGCCTGAACGCTCA
127 TCTCCGACCGGCTCAACGCCCGAACGCTCA
* * * *
13412434 TTTCGTGGGTTGAG-TTAGGCATAAAGAGTTCATTCCCAGTCTAAGATCAAACTGGATCAAGGGT
1 TTTCGTGGGTTG-GCTTAGGCATAAGGAGTTCATT-CCAGTCTAAGACCAAACCGGACCAAGGGT
* * * * *
13412498 TGCGGCAGCAACATCGACAGCACCCAGGGGGACCGAGCCGATCCCCGGCTTGCGTATTCTGCCTC
64 TACGGCAACAACACCGACAGCACCCAGGGGGACCGAGCCGATCCCCGGCTTACGTATTATGCCTC
* * * * * *
13412563 TTCGACCGGCTGAGCGCCCGCATGCTCG
129 TCCGACCGGCTCAACGCCCGAACGCTCA
* * *
13412591 TTTCATGGGTTGGCTTAGGCGTACGGAGTTCATTC
1 TTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTC
13412626 AATACCTAAG
Statistics
Matches: 156, Mismatches: 32, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
156 2 0.01
157 81 0.52
158 3 0.02
159 66 0.42
160 4 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (156 bp):
TTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCAGTCTAAGACCAAACCGGACCAAGGGTTA
CGGCAACAACACCGACAGCACCCAGGGGGACCGAGCCGATCCCCGGCTTACGTATTATGCCTCTC
CGACCGGCTCAACGCCCGAACGCTCA
Found at i:13412600 original size:157 final size:158
Alignment explanation
Indices: 13412135--13412625 Score: 488
Period size: 159 Copynumber: 3.1 Consensus size: 158
13412125 CCCAGTCTAA
* * * * * *
13412135 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGGTA
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCAAGGGTTGCGGCAGCAAGATCGATA
* * * * * *
13412200 GCACACAGGAGGGATCGGGCCGATCCTCGGCTTGCGCATTCTACCTC-TCTGGCCGGTTGAGTGC
66 GCACACAGGAGGGACCGGGCCGATCCCCGGCTTGCGTATTCTGCCTCTTC-GACCGGCTGAGTGC
* *
13412264 CCGCACACCCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * ** * * *
13412293 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCGAA-GGTTATGGCAACGAGACCGA
1 GCATAAGGAGTTCATTCCCA-GTCTAAGATCAAACTGGACC-AAGGGTTGCGGCAGCAAGATCGA
** * * * * * *
13412356 TAGCATGCAGAGAGGGACCGGGCCGATCCCCGGCTTACGTATTATGCCTCTCCGATCGGCTCAAT
64 TAGCACACAG-GAGGGACCGGGCCGATCCCCGGCTTGCGTATTCTGCCTCTTCGACCGGCTGAGT
* * *
13412421 GCCTGAACGCTCATTTCGTGGGTTGAG-TTAG
128 GCCCGCACGCTCGTTTCGTGGGTTG-GCTTAG
* * * *
13412452 GCATAAAGAGTTCATTCCCAGTCTAAGATCAAACTGGATCAAGGGTTGCGGCAGCAACATCGACA
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCAAGGGTTGCGGCAGCAAGATCGATA
* * *
13412517 GCACCCAGG-GGGACCGAGCCGATCCCCGGCTTGCGTATTCTGCCTCTTCGACCGGCTGAGCGCC
66 GCACACAGGAGGGACCGGGCCGATCCCCGGCTTGCGTATTCTGCCTCTTCGACCGGCTGAGTGCC
* *
13412581 CGCATGCTCGTTTCATGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
13412609 GCGTACGGAGTTCATTC
1 GCATAAGGAGTTCATTC
13412626 AATACCTAAG
Statistics
Matches: 259, Mismatches: 66, Indels: 17
0.76 0.19 0.05
Matches are distributed among these distances:
156 1 0.00
157 85 0.33
158 53 0.20
159 115 0.44
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATAAGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCAAGGGTTGCGGCAGCAAGATCGATA
GCACACAGGAGGGACCGGGCCGATCCCCGGCTTGCGTATTCTGCCTCTTCGACCGGCTGAGTGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13413732 original size:26 final size:26
Alignment explanation
Indices: 13413695--13413750 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
13413685 TAGGTTGACT
* *
13413695 TAAGCATGCAGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAATC
*
13413721 TAAGCATACAGAGTTCATTCCCAATC
1 TAAGCATACAGAGTTCATCCCCAATC
13413747 TAAG
1 TAAG
13413751 ATCAAACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAATC
Found at i:13414081 original size:159 final size:159
Alignment explanation
Indices: 13413724--13414133 Score: 382
Period size: 159 Copynumber: 2.6 Consensus size: 159
13413714 CCCAGTCTAA
* * * * *
13413724 GCATACAGAGTTCATTCCCAATCTAAGATCAAACCGGATCGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACA
* * * * *
13413789 GCACGCAGA-GGGGA-TCGAGTCGATCCCCGGCTTGCGTATTCTACCTCTCCGGTCAACTGAGCG
66 GCACGCAGAGGGGGACTCG-GCCGATCCCCGGCTTGCGTATTATACCTCTCCGGCCAACTCAACG
** * * *
13413852 CCTGCATACCCGTTTCATCGGTTGGCTTAG
130 CCCACACACCCATTTCATCGGTTGACTTAG
* ** * * *
13413882 GCATAGGGA-TTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAACAGGACCG
1 GCATACGGAGTTT-ATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCG
* * * * * **
13413944 GCAGCACGCAGAGGGGGACTCGGCCGATCCCTGGCTTGTGTATTATGCCTCTTCGGCCGGCTCAA
63 ACAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGTATTATACCTCTCCGGCCAACTCAA
** ** *
13414009 CGCCCACACAGTCATTTTGTGGGTTGACTTAG
128 CGCCCACACACCCATTTCATCGGTTGACTTAG
* * * * * *
13414041 GCATACGGAGTTTATTCCCAGTCTAAGATCAGATCGGACCGAGGGCTGCGATAGTAGGATCAACA
1 GCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACA
*
13414106 GCACGCAG-GGGGGACTAGGCCGATCCCC
66 GCACGCAGAGGGGGACTCGGCCGATCCCC
13414134 ATGCTTTTGG
Statistics
Matches: 196, Mismatches: 48, Indels: 16
0.75 0.18 0.06
Matches are distributed among these distances:
157 5 0.03
158 73 0.37
159 109 0.56
160 9 0.05
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACA
GCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGTATTATACCTCTCCGGCCAACTCAACGC
CCACACACCCATTTCATCGGTTGACTTAG
Found at i:13415301 original size:26 final size:26
Alignment explanation
Indices: 13415272--13415324 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13415262 GTTGACTTAG
*
13415272 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGAAGTTCATTC-CCAGTCTAA
13415298 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13415324 G
1 G
13415325 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13415760 original size:158 final size:158
Alignment explanation
Indices: 13415298--13415799 Score: 507
Period size: 158 Copynumber: 3.2 Consensus size: 158
13415288 TCCAGTCTAA
* * * * * *
13415298 GCATACGAAGTTCATTCCCA-GTCTAAGATCGGACTGGACCGAGGGTTATGGCAGCAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATTGGACTGAGGGTTGTGGTAGCAGGATCGGT
* * * * * * *
13415362 AGCACGCAGGGGGGATCGGGCCAATCCCTAGCTTGCGCATTCTGCCTTTTCGATCGGCTGAGCAC
65 AGCACGAAGGGGGGACCGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
*
13415427 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** *
13415456 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ATCGGA-TCGAGGGTTGTGGCTA-C-GAGA-C
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATTGGACT-GAGGGTTGTGG-TAGCAG-GATC
* * * * * * * *
13415516 AGGCAGCATGCAAAGGGGGACTGGGCCGATCCCCAGCTTGTGCATTGTGCCTC-CCTGGCCGGCT
62 -GGTAGCACG-AAGGGGGGACCGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCC-GACCGGCT
* * *
13415580 CAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
124 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** *
13415615 GCATACGGAGTTCATTTCCA-GTCTAAGATCAGATTGGACTGAGAGTTGCAGTAGCAGGATCGAT
1 GCATACGGAGTTCA-TTCCATGTCTAAGATCAGATTGGACTGAGGGTTGTGGTAGCAGGATCGGT
* * * *
13415679 AGCACGTAGGGGGGACCGAGCCAATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGC
65 AGCACGAAGGGGGGACCGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * *
13415744 CCGTACACTCATTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
13415773 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13415800 CATACGGAGT
Statistics
Matches: 273, Mismatches: 55, Indels: 32
0.76 0.15 0.09
Matches are distributed among these distances:
157 10 0.04
158 140 0.51
159 115 0.42
160 8 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATTGGACTGAGGGTTGTGGTAGCAGGATCGGTA
GCACGAAGGGGGGACCGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13415809 original size:26 final size:26
Alignment explanation
Indices: 13415773--13415825 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13415763 GTTGGCTTAG
13415773 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13415799 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13415825 G
1 G
13415826 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13416167 original size:26 final size:26
Alignment explanation
Indices: 13416138--13416191 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
13416128 CAGGATGACT
13416138 TAGGCATAC-GAAGTTCATCCCCAATC
1 TAGGCATACAG-AGTTCATCCCCAATC
* *
13416164 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATCCCCAATC
13416190 TA
1 TA
13416192 AGATCGGACC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATCCCCAATC
Found at i:13416513 original size:26 final size:26
Alignment explanation
Indices: 13416484--13416536 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13416474 GTTGGCTTAG
13416484 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
13416510 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
13416536 G
1 G
13416537 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:13417241 original size:26 final size:26
Alignment explanation
Indices: 13417205--13417257 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13417195 GTTGAATTAG
*
13417205 GCATACGGAGTT-AATCCCTAGTCTAA
1 GCATACAGAGTTCAATCCC-AGTCTAA
*
13417231 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
13417257 G
1 G
13417258 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:13417519 original size:185 final size:183
Alignment explanation
Indices: 13417292--13417931 Score: 553
Period size: 185 Copynumber: 3.5 Consensus size: 183
13417282 CAGCAGGATC
* * * *
13417292 GGTCCCCGGCTTGTGCATTCTGCCTCTCCGA-TCGACTGAGCACCCGCACGCCCGCTTCGTGGGT
1 GGTCCCCGGCTTGCGCATTCTGCCTCTCCGACT-GGCTGAGCACCCGCACGCCCGTTTCATGGGT
* * *
13417356 TGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCA
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ATACAGAGTTCATTCCCAGTCTAAGATCG
*
13417421 GATCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGGGGGGGACCGGGCC
129 GATCGGACCGAGGGTTG-GGCAGCAGGATCGGCAGCACGTAGGGGGGGACCGGGCT
* * * * *
13417477 GATCCCCGGCTTGTGCATTCTGCTTCTCCGACTGGCTGAGCACCTGCACG-CTGATTTCATGGGT
1 GGTCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCACCCGCACGCCCG-TTTCATGGGT
* * ** ** * ** *
13417541 TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG--CCCCAG-TCAGACCGAGGGT-TG-T-GG
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATACAGAGTTCATTCCCAGTCTAAGATCGG
* *** * * *
13417600 CTGCAGGACCGA--------CAGC-GAGATCAATAGCATGTAGAGGGGGATCGGGCT
130 AT-C-GGACCGAGGGTTGGGCAGCAG-GATCGGCAGCACGTAGGGGGGGACCGGGCT
* * * * * * * *
13417648 GGTCCCCGGCTTGCACATTATGCCTCTCCGATTGGTTGAGTACCCGCACGCTCATTTCATGGGCT
1 GGTCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCACCCGCACGCCCGTTTCATGGGTT
* * * *
13417713 GACTTAGGGATACGGAGTTCATCCTCA-GTATAAGCATACAGAGTTCATTCCCAGTCTAAGATCG
66 GGCTTAGGCATACGGAGTTCATTC-CATGTCTAAG-ATACAGAGTTCATTCCCAGTCTAAGATCG
* * * * *
13417777 GACCAGACCGAGGGTTACGGGCAACAGGATCGGCAGCACGCA-GGGGGCACCGGGCT
129 GATCGGACCGAGGGTT--GGGCAGCAGGATCGGCAGCACGTAGGGGGGGACCGGGCT
** * *
13417833 GGTCCCTAGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTT
1 GGTCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCACCCGCACGCCCGTTTCATGGGTT
** * *
13417898 GGCTTAGGTGTAGGGAGTTCATTCCCTGTCTAAG
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
13417932 CCCCAGTCAG
Statistics
Matches: 344, Mismatches: 85, Indels: 52
0.72 0.18 0.11
Matches are distributed among these distances:
170 1 0.00
171 104 0.30
172 2 0.01
174 3 0.01
175 8 0.02
176 7 0.02
177 2 0.01
178 4 0.01
179 2 0.01
180 8 0.02
181 8 0.02
182 3 0.01
184 3 0.01
185 174 0.51
186 14 0.04
187 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (183 bp):
GGTCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCACCCGCACGCCCGTTTCATGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATACAGAGTTCATTCCCAGTCTAAGATCGGA
TCGGACCGAGGGTTGGGCAGCAGGATCGGCAGCACGTAGGGGGGGACCGGGCT
Found at i:13417788 original size:356 final size:355
Alignment explanation
Indices: 13417292--13417956 Score: 895
Period size: 356 Copynumber: 1.9 Consensus size: 355
13417282 CAGCAGGATC
** * * * *
13417292 GGTCCCCGGCTTGTGCATTCTGCCTCTCCGATCGACTGAGCACCCGCACGCCCGCTTCGTGGGTT
1 GGTCCCCGGCTTGCACATTATGCCTCTCCGATCGACTGAGCACCCGCACGCCCACTTCATGGGCT
* * * * * *
13417357 GGCTTAGGCATATGGAGTTCATTCCATGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCAG
66 GACTTAGGCATACGGAGTTCATCCCATGTATAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG
* * * * * *
13417422 ATCGGACCGAGGGTT-GTGGCAGCAGGATCGGCAGCACGTAGGGGGGGACCGGGCCGATCCCCGG
131 ACCAGACCGAGGGTTAG-GGCAACAGGATCGGCAGCACGCA-GGGGGCACCGGGCCGATCCCCAG
* * * *
13417486 CTTGTGCATTCTGCTTCTCCGACTGGCTGAGCACCTGCACG-CTGATTTCATGGGTTGGCTTAGG
194 CTTGCGCATTCTGCCTCTCCGACTGGCTGAGCACCCGCACGCCCG-TTTCATGGGTTGGCTTAGG
13417550 CATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCTGCAGGACCGACAG
258 CATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCTGCAGGACCGACAG
13417615 CGAGATCAATAGCATGTAGAGGGGGATCGGGCT
323 CGAGATCAATAGCATGTAGAGGGGGATCGGGCT
* ** * * *
13417648 GGTCCCCGGCTTGCACATTATGCCTCTCCGATTGGTTGAGTACCCGCACGCTCATTTCATGGGCT
1 GGTCCCCGGCTTGCACATTATGCCTCTCCGATCGACTGAGCACCCGCACGCCCACTTCATGGGCT
* *
13417713 GACTTAGGGATACGGAGTTCATCCTCA-GTATAAGCATACAGAGTTCATTCCCAGTCTAAGATCG
66 GACTTAGGCATACGGAGTTCATCC-CATGTATAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
* * *
13417777 GACCAGACCGAGGGTTACGGGCAACAGGATCGGCAGCACGCAGGGGGCACCGGGCTGGTCCCTAG
130 GACCAGACCGAGGGTTA-GGGCAACAGGATCGGCAGCACGCAGGGGGCACCGGGCCGATCCCCAG
* * *
13417842 CTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGT
194 CTTGCGCATTCTGCCTCTCCGACTGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGC
* ** * *
13417907 GTAGGGAGTTCATTCCCTGTCTAAGCCCCAGTCAGACTGAGGGTTGTGGC
259 ATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGC
13417957 AATGGGACCT
Statistics
Matches: 264, Mismatches: 41, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
356 238 0.90
357 25 0.09
358 1 0.00
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (355 bp):
GGTCCCCGGCTTGCACATTATGCCTCTCCGATCGACTGAGCACCCGCACGCCCACTTCATGGGCT
GACTTAGGCATACGGAGTTCATCCCATGTATAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG
ACCAGACCGAGGGTTAGGGCAACAGGATCGGCAGCACGCAGGGGGCACCGGGCCGATCCCCAGCT
TGCGCATTCTGCCTCTCCGACTGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCAT
ACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCTGCAGGACCGACAGCGA
GATCAATAGCATGTAGAGGGGGATCGGGCT
Found at i:13418627 original size:26 final size:26
Alignment explanation
Indices: 13418598--13418650 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13418588 GTTGACTTAG
13418598 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
13418624 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
13418650 G
1 G
13418651 ATCGGTCCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:13419201 original size:344 final size:343
Alignment explanation
Indices: 13418548--13419247 Score: 935
Period size: 344 Copynumber: 2.0 Consensus size: 343
13418538 CTCTGATCGA
*
13418548 CCTCTCCGATCGGCTGAGCACCCCTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
1 CCTCTCCGACCGGCTGAGCACCCCTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
*
13418613 CCCCAATCTAAGCATACGGAGTTCATTCCTAATCTAAGATCGGTCCGGACCGAGAGTTGCGATAG
66 CCCCAATCTAAGCATACGGAGTTCATTCCTAATCTAAGATAGGTCCGGACCGAGAGTTGCGATAG
* * * * * *
13418678 TAGGATCGATAGCACATAGGAGGGACCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGGCC
131 CAGGATCGACAGCACATAGGAGGGACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTACGGCC
* *
13418743 GGTTAAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
196 GGCTAAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * * * *
13418808 GCTCCAACCGAATCGAGGGTTGTGGCAGCGGGATCGACAGCGCGCAGAGGAGGATCGGGTTGATC
261 GCCCCAACCGAATCAAAGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGAGGACCGGGCTGATC
* * *
13418873 CCTAGCTTTCGTATTAAG
326 CCCAGCTTGCGCATTAAG
** *
13418891 CCTCTCCGACCGGCTGAGTGCCCCGTACGCTCTTTTCGTGGGTTGACTTAGGCATAC-ATAGTTC
1 CCTCTCCGACCGGCTGAGCACCCC-TACGCTCATTTCGTGGGTTGACTTAGGCATACGA-AGTTC
* * * * *
13418955 ATCCCCAGTCTAAGCATACGGAGTTCATTCGC-AGTCTAAGATTAGG-CCGGACTGAGGGTTGTG
64 ATCCCCAATCTAAGCATACGGAGTTCATTC-CTAATCTAAGA-TAGGTCCGGACCGAGAGTTGCG
* ** * *
13419018 ATAGCAGGATCGACAGCACGTAGGAGGGGTCGAGTC-ATTCCCCGGCTTACGCATTCTACGT-TG
127 ATAGCAGGATCGACAGCACATAGGAGGGACCGAGCCGA-TCCCCGGCTTACGCATTCTACCTCT-
* *
13419081 ACGGTCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
190 ACGGCCGGCTAAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
* * *
13419146 GTCTAAGCCCCAACCGGATCAAAGGTTGTGGCAGCGGGA-CTGACAGCATGCAGAGGGGGACCGG
255 GTCTAAGCCCCAACCGAATCAAAGGTTGTGGCAGCGGGATC-GACAGCACGCAGAGGAGGACCGG
* *
13419210 GCTGATCCCCGGCTTGCGCATTATG
319 GCTGATCCCCAGCTTGCGCATTAAG
*
13419235 CCTCTTCGACCGG
1 CCTCTCCGACCGG
13419248 TTTAGGCATA
Statistics
Matches: 310, Mismatches: 40, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
343 25 0.08
344 281 0.91
345 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (343 bp):
CCTCTCCGACCGGCTGAGCACCCCTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
CCCCAATCTAAGCATACGGAGTTCATTCCTAATCTAAGATAGGTCCGGACCGAGAGTTGCGATAG
CAGGATCGACAGCACATAGGAGGGACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTACGGCC
GGCTAAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
GCCCCAACCGAATCAAAGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGAGGACCGGGCTGATC
CCCAGCTTGCGCATTAAG
Found at i:13419289 original size:26 final size:26
Alignment explanation
Indices: 13419253--13419305 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13419243 ACCGGTTTAG
13419253 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13419279 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13419305 G
1 G
13419306 ATCAGGCCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13419480 original size:26 final size:26
Alignment explanation
Indices: 13419450--13419502 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13419440 GTTGGCTTAG
13419450 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
* *
13419476 GCATAGAGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13419502 G
1 G
13419503 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13419672 original size:26 final size:26
Alignment explanation
Indices: 13419642--13419694 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13419632 GTTGGCTTAG
13419642 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
13419668 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
13419694 G
1 G
13419695 ATTGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:13419680 original size:192 final size:195
Alignment explanation
Indices: 13419249--13419923 Score: 711
Period size: 197 Copynumber: 3.5 Consensus size: 195
13419239 TTCGACCGGT
* * * *
13419249 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGG-C
1 TTAGGCATACAGAGTTCATTCCAAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT-TGGAC
* * * * * * * * ***
13419313 CGGACCAAAGGTTGTGACAGCAGAACCAGCAGCCGGATTGGTAGCAAGTAG-GGGTGGATCG-GA
65 CGGACCGATGGTTGCGACAGCAGGACCAGCAACAGGATCGATAGCATCCAGAGGG-GGATCGAG-
* * * * ** * * * * * * *
13419376 CCGATCCCTGGCTTGCGTATTCTACCTCTTCGG-CTGGCTGAGCACCCGCATGCTCGTTTCATGG
128 CTGATCCCCGACTTACACATTATGCCTCTCCGGAC-GAC--AGCGCCCACACGCTCGTTTCATGG
13419440 GTTGGC
190 GTTGGC
* * *
13419446 TTAGGCATACAGAGTTCATTCCATGTCTAAGCATAGAGAGTTCGTTCCCAGTCTAAGATTGGACC
1 TTAGGCATACAGAGTTCATTCCAAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACC
* **
13419511 GGACCGATGGTTGTGGTAGCAGGACCAGCAACAGGATCGATAGCATCCAGAGGGGGATC-AGGCT
66 GGACCGATGGTTGCGACAGCAGGACCAGCAACAGGATCGATAGCATCCAGAGGGGGATCGA-GCT
* *
13419575 GATCCCCGACTTACGCATTATGCCTCTCC-GACGA-AGC-TCCACACGCTCGTTTCATGGGTTGG
130 GATCCCCGACTTACACATTATGCCTCTCCGGACGACAGCGCCCACACGCTCGTTTCATGGGTTGG
13419637 C
195 C
13419638 TTAGGCATACAGAGTTCATTCCAAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACC
1 TTAGGCATACAGAGTTCATTCCAAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACC
** * * *
13419703 AAACCGATGGTTGCGACAGTAGGACCAGCAACAGGATCGGTAGCATGCAGAGGGGGATCGAGCTG
66 GGACCGATGGTTGCGACAGCAGGACCAGCAACAGGATCGATAGCATCCAGAGGGGGATCGAGCTG
* * *
13419768 ATCCCCGACTTACACATTATGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
131 ATCCCCGACTTACACATTATGCCTCTCCGGACGAC--AGCGCCCACACGCTCGTTTCATGGGTTG
*
13419833 AC
194 GC
* * * * * * *
13419835 TTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATAGAGCTT-ATTCCCAATGTAAGATCGGAC
1 TTAGGCATACAGAGTTCATTCCAAGTCTAAGCATACAGAG-TTCATTCCCAGTCTAAGATTGGAC
* *
13419899 CGGACCGAGGGTTACGACAGCAGGA
65 CGGACCGATGGTTGCGACAGCAGGA
13419924 TCGACAGCAC
Statistics
Matches: 408, Mismatches: 58, Indels: 24
0.83 0.12 0.05
Matches are distributed among these distances:
192 167 0.41
193 8 0.02
196 7 0.02
197 220 0.54
198 6 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.23
Consensus pattern (195 bp):
TTAGGCATACAGAGTTCATTCCAAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACC
GGACCGATGGTTGCGACAGCAGGACCAGCAACAGGATCGATAGCATCCAGAGGGGGATCGAGCTG
ATCCCCGACTTACACATTATGCCTCTCCGGACGACAGCGCCCACACGCTCGTTTCATGGGTTGGC
Found at i:13420371 original size:26 final size:26
Alignment explanation
Indices: 13420333--13420382 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
13420323 GGCTTAGGCA
13420333 TACGGAGTCCA-TTCCATGTCTAAGCG
1 TACGGAGTCCATTTCCA-GTCTAAGCG
*
13420359 TACGGAGTTCATTTCCAGTCTAAG
1 TACGGAGTCCATTTCCAGTCTAAG
13420383 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTCCATTTCCAGTCTAAGCG
Found at i:13421088 original size:26 final size:26
Alignment explanation
Indices: 13421052--13421104 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13421042 GTTGAATTAG
13421052 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13421078 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13421104 G
1 G
13421105 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13421591 original size:26 final size:26
Alignment explanation
Indices: 13421555--13421607 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13421545 GTTGGCTTAG
13421555 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13421581 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13421607 G
1 G
13421608 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13421744 original size:192 final size:195
Alignment explanation
Indices: 13421527--13421961 Score: 644
Period size: 192 Copynumber: 2.2 Consensus size: 195
13421517 AGTGCCCGCA
* *
13421527 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
1 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACAGAGT
* **
13421592 TCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGACCAGCAATC-GGATTGG
66 TCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGACCAG-AAGCAGGATCAG
* * *
13421656 TAGCATGCAG-GGGGGACCGGGCTGATCCCCGACTTGCGCATTCTACCTCT-C-CGACTGAGCGC
130 TAGCATGCAGAGAGGGACCGGGCTGATCCCCGACTTACGCATTATACCTCTCCGCGACTGAGCGC
13421718 C
195 C
*
13421719 CGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACAGAGT
1 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACAGAGT
** * * *
13421784 TCATTCCCAGTCTAAGATTGGACCGGATCGATGGTTGTGGCAGCAGGACCAGTAGCAGGATCAGT
66 TCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGACCAGAAGCAGGATCAGT
* * * *
13421849 AGCATGCAGAGAGGGATCGGGCTGATCCCCGTCTTACGCATTATGCCTGTCCGGTCGACTGAGCG
131 AGCATGCAGAGAGGGACCGGGCTGATCCCCGACTTACGCATTATACCTCTCC-G-CGACTGAGCG
13421914 CC
194 CC
*
13421916 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
1 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
13421962 CAATGTAAGA
Statistics
Matches: 217, Mismatches: 20, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
191 2 0.01
192 125 0.58
193 33 0.15
194 1 0.00
197 56 0.26
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (195 bp):
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACAGAGT
TCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGACCAGAAGCAGGATCAGT
AGCATGCAGAGAGGGACCGGGCTGATCCCCGACTTACGCATTATACCTCTCCGCGACTGAGCGCC
Found at i:13421776 original size:26 final size:26
Alignment explanation
Indices: 13421747--13421799 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13421737 GTTGGCTTAG
*
13421747 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
13421773 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
13421799 G
1 G
13421800 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:13422439 original size:26 final size:26
Alignment explanation
Indices: 13422409--13422461 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13422399 GTTGGCTTAG
*
13422409 GCGTACGGAGTTCATT-CTATGTCTAA
1 GCGTACAGAGTTCATTCCTA-GTCTAA
13422435 GCGTACAGAGTTCATTCCTAGTCTAA
1 GCGTACAGAGTTCATTCCTAGTCTAA
13422461 G
1 G
13422462 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCGTACAGAGTTCATTCCTAGTCTAA
Found at i:13423589 original size:158 final size:159
Alignment explanation
Indices: 13423270--13423624 Score: 392
Period size: 158 Copynumber: 2.2 Consensus size: 159
13423260 TTGCCTCCTC
* * * **
13423270 GGTTGGCTGAGGCATAGGGAGTTCATTCCATGGCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAG
1 GGTTGGCAGAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGCTGGACCGAGGGTTGCAGCAG
* * * * * *
13423335 CGGGACCGGTAGCACGCAAAGGGGGACCAAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGT
66 CGGGACCGGTAGCACGCAAAGAGGGACCAAGCCGATCCCCGACTTGCACATTATACCTCTCCAGC
* * *
13423400 TGGCTGAGTGCCCGTACGCTCCTTTCATG
131 TGGATCAGTGCCCGCACGCTCCTTTCATG
13423429 GGTTGGCAGAGGCATAGGGA-TTCATTCCTTGTCTAAGCCCCAG-TCGGACCGAGGGTTGCAGCA
1 GGTTGGCAGAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGCT-GGACCGAGGGTTGCAGCA
* * * * * * * ** * *
13423492 GTGGGACTGGTAGCACGCAGATAGGGATCAGGTCGATCCCTTACTTGCACATTATGCCTCTCTAG
65 GCGGGACCGGTAGCACGCAAAGAGGGACCAAGCCGATCCCCGACTTGCACATTATACCTCTCCAG
* *
13423557 CTGGATCAGTGCCCGCACGCTCGTTTCGTG
130 CTGGATCAGTGCCCGCACGCTCCTTTCATG
* * * *
13423587 GGTT-GAATTAGGCATACGGAGTTCATTCCTAGTCTAAG
1 GGTTGGCA-GAGGCATAGGGAGTTCATTCCTTGTCTAAG
13423625 ATCGGACCAG
Statistics
Matches: 162, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
157 3 0.02
158 124 0.77
159 35 0.22
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
GGTTGGCAGAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGCTGGACCGAGGGTTGCAGCAG
CGGGACCGGTAGCACGCAAAGAGGGACCAAGCCGATCCCCGACTTGCACATTATACCTCTCCAGC
TGGATCAGTGCCCGCACGCTCCTTTCATG
Found at i:13423796 original size:26 final size:25
Alignment explanation
Indices: 13423756--13423807 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
13423746 GTTCGCTTAG
13423756 GCATACGAATTCATTCC-ATGTCTAA
1 GCATACGAATTCATTCCTA-GTCTAA
*
13423781 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATAC-GAATTCATTCCTAGTCTAA
13423807 G
1 G
13423808 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 6 0.25
26 17 0.71
27 1 0.04
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (25 bp):
GCATACGAATTCATTCCTAGTCTAA
Found at i:13424171 original size:26 final size:26
Alignment explanation
Indices: 13424135--13424184 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
13424125 GTTGACTTAG
*
13424135 GCATATGGAGTTCATCCCCAGTCTAC
1 GCATACGGAGTTCATCCCCAGTCTAC
*
13424161 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
13424185 TAGATCGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAC
Found at i:13424349 original size:26 final size:26
Alignment explanation
Indices: 13424319--13424371 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13424309 GTTGACTTAG
*
13424319 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13424345 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13424371 G
1 G
13424372 ATCGGATCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13424530 original size:185 final size:184
Alignment explanation
Indices: 13424095--13424531 Score: 538
Period size: 184 Copynumber: 2.4 Consensus size: 184
13424085 CCTCTACGAT
* * *
13424095 CGGCTGAGCACCCGCACACTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTA
1 CGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * * * * *
13424160 CGCATACGGAGTTCATTCCCAGTCTTAGATCGGACCGGATCGAGGTTTGCGGTAGCAGGATCGGC
66 AGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGTTTGCGGCAACAGGATCGAC
* * * * *
13424225 AGCACGCAGGGGGGACCGGGCTAATCCTCAGCTTACGCATTATGCCTCTTCGGT
131 AGCACGCAGGGGGGACCGAGCCAATCCCCAGCTTACGCATTATGCCTCTCCGGC
* ** * * *
13424279 CGGCTCAGTGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * *
13424344 AGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGTACCGAAGG-TTGTGGCAACAGGATCGA
66 AGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG-AGGTTTGCGGCAACAGGATCGA
* * *
13424408 CAGCACGCAGGGGGGCACCGAGCCGATCCCCTGCTTACGCATTTTGCCTCTCCGGC
130 CAGCACGCAGGGGGG-ACCGAGCCAATCCCCAGCTTACGCATTATGCCTCTCCGGC
* * * *
13424464 CTGCTGAGCACCCGCACG-TCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTC
1 CGGCTGAGCACCCGCACGCT-CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTC
13424527 TAAGC
64 TAAGC
13424532 CCCAGCTGGA
Statistics
Matches: 212, Mismatches: 37, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
184 125 0.59
185 87 0.41
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (184 bp):
CGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
AGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGTTTGCGGCAACAGGATCGAC
AGCACGCAGGGGGGACCGAGCCAATCCCCAGCTTACGCATTATGCCTCTCCGGC
Found at i:13424708 original size:159 final size:158
Alignment explanation
Indices: 13424345--13424730 Score: 356
Period size: 159 Copynumber: 2.4 Consensus size: 158
13424335 CCCAGTCTAA
*
13424345 GCATACAGAGTTCATTCCCAGTCTAAGATCGGAT-CGTACCGAA-GGTTGTGGCAACAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGG-TCCG-ACC-AAGGGTTGTGGCAACAGGATCGA
** * * *
13424408 CAGCACGCAGGGGGGCACCGAGCCGATCCCCTGCTTACGCATTTTGCCTCTCCGGCCTGCTGAGC
63 CAGCACGCAAAGGGGCACCGAGCCGATCCCCTGCTTACGCATTATGCCTCTCCGGCCGGCTCAGC
*
13424473 ACCCGCACGTCCATTTCGTGGGTTGGCTTAG
128 ACCCGCACGTCCATTTCGTGGGTTGACTTAG
* ** * * ** * *
13424504 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CTGGACTGAGGGTTGTGGCAGCCGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGTC-CGACCAAGGGTTGTGGCAACAGGATC-G
* * * * * *
13424566 ATAGCACGCATAAGGGG-ATCGGGCTGAT-CCCTAGCTTGCGCATTATGCCTCTCCGGCCGGTTC
62 ACAGCACGCA-AAGGGGCACCGAGCCGATCCCCT-GCTTACGCATTATGCCTCTCCGGCCGGCTC
** * *
13424629 AGTGCCCGTACG-CTCATTTCGTTGGTTGACTTAG
125 AGCACCCGCACGTC-CATTTCGTGGGTTGACTTAG
** *
13424663 GCATACGGAGTTCATTCCCAGTCTAAGATCGGTCCAGACCAAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGTCC-GACCAAGGGTTGTGGCAACAGGATCGACA
13424728 GCA
65 GCA
13424731 TGCAGGGGGG
Statistics
Matches: 177, Mismatches: 37, Indels: 26
0.74 0.15 0.11
Matches are distributed among these distances:
158 12 0.07
159 154 0.87
160 11 0.06
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGTCCGACCAAGGGTTGTGGCAACAGGATCGACAG
CACGCAAAGGGGCACCGAGCCGATCCCCTGCTTACGCATTATGCCTCTCCGGCCGGCTCAGCACC
CGCACGTCCATTTCGTGGGTTGACTTAG
Found at i:13425898 original size:159 final size:158
Alignment explanation
Indices: 13425538--13425940 Score: 386
Period size: 159 Copynumber: 2.5 Consensus size: 158
13425528 CAGTCGAGGT
* * * *
13425538 ATACGGAGTTCATTCCCAGTCTAAGAT-GGAACCGGACCGAGGATTGCGGCAGCAGGATCGACAA
1 ATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCGGACCGAGGGTTGCGGCAGCAGGACCGACAA
* * * *
13425602 CACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTTTCCGACTGGCTGAGCACCC
65 CACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGACTGGCTCAGCACCC
* * ** *
13425667 GCATGCCCATTTTGTGGGTTGGCTTAGGC
130 GAACGCCCATTTCATGGGTTGACTTAGGC
* ** * * * *
13425696 ATAGGGAGTTCATT-CCATGTCTAAGCCCTAGCT-AGACCGAGGGTTGTGGCAGC-GAGACCGGC
1 ATACGGAGTTCATTCCCA-GTCTAAGATC-AGATCGGACCGAGGGTTGCGGCAGCAG-GACCGAC
* * * **
13425758 AGCACGTAGAGGGGGACTGGGCCGATCCCTGGCTTGCACATTATGCCTCTCCGA-TCGGCTCAG-
63 AACACGCAG-GGGGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGACT-GGCTCAGC
* *
13425821 AGCCCGAACGCTCGTTTCATGGGTTGACTTAGGC
126 A-CCCGAACGCCCATTTCATGGGTTGACTTAGGC
* * * * * *
13425855 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTACGACAGCAGGATCGATAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGACCGACAAC
*
13425920 ATGCATGGGGGGACCGGGCCG
66 ACGCA-GGGGGGACCGGGCCG
13425941 GTTCCTGGCT
Statistics
Matches: 192, Mismatches: 42, Indels: 21
0.75 0.16 0.08
Matches are distributed among these distances:
157 4 0.02
158 54 0.28
159 128 0.67
160 6 0.03
ACGTcount: A:0.21, C:0.27, G:0.32, T:0.21
Consensus pattern (158 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGACCGACAAC
ACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGACTGGCTCAGCACCCG
AACGCCCATTTCATGGGTTGACTTAGGC
Found at i:13426048 original size:26 final size:26
Alignment explanation
Indices: 13426012--13426064 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13426002 GTTGGCTTAG
13426012 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13426038 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13426064 G
1 G
13426065 ATCTAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13426879 original size:26 final size:26
Alignment explanation
Indices: 13426843--13426895 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13426833 GTTGGCTTAG
**
13426843 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13426869 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13426895 G
1 G
13426896 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13427259 original size:26 final size:26
Alignment explanation
Indices: 13427223--13427327 Score: 167
Period size: 26 Copynumber: 4.0 Consensus size: 26
13427213 GTTGACTTAG
13427223 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
13427249 GCATACGGAGTTCAT-CCTCAGTCTAA
1 GCATACGGAGTTCATCCCT-AGTCTAA
*
13427275 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
13427301 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
13427327 G
1 G
13427328 ATTGGACCTG
Statistics
Matches: 73, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
25 3 0.04
26 68 0.93
27 2 0.03
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:13427489 original size:26 final size:26
Alignment explanation
Indices: 13427459--13427511 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13427449 GTTGGCTTAG
*
13427459 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13427485 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13427511 G
1 G
13427512 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13428735 original size:26 final size:26
Alignment explanation
Indices: 13428684--13428736 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13428674 GTTGGCTTAG
* *
13428684 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGCCTAA
13428710 GCATACGAAGTTCATTCCCA-GCCTAA
1 GCATACGAAGTTCATT-CCATGCCTAA
13428736 G
1 G
13428737 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGCCTAA
Found at i:13430294 original size:26 final size:26
Alignment explanation
Indices: 13430258--13430336 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
13430248 GTTGACTTAG
*
13430258 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
13430284 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
13430310 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
13430336 G
1 G
13430337 ATCGGATCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:13430787 original size:26 final size:26
Alignment explanation
Indices: 13430757--13430809 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13430747 CTCTGCTTAG
*
13430757 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13430783 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13430809 G
1 G
13430810 ATAGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13431116 original size:26 final size:26
Alignment explanation
Indices: 13431086--13431138 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13431076 GTTGACTTAG
13431086 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13431112 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13431138 G
1 G
13431139 ATCGAACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13431348 original size:26 final size:26
Alignment explanation
Indices: 13431270--13431339 Score: 124
Period size: 26 Copynumber: 2.7 Consensus size: 26
13431260 GTTGGCTTAG
13431270 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
13431296 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
13431322 GCATACGGA-TTGCATTCC
1 GCATACGGAGTT-CATTCC
13431340 CAGTATAAGA
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
25 2 0.05
26 41 0.95
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:13432049 original size:26 final size:26
Alignment explanation
Indices: 13432019--13432071 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13432009 GTTGACTTAG
*
13432019 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13432045 GCATACGAAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13432071 G
1 G
13432072 ATCAAAATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13432967 original size:26 final size:26
Alignment explanation
Indices: 13432938--13432990 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13432928 GTTGACTTAG
13432938 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13432964 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13432990 G
1 G
13432991 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13433065 original size:368 final size:354
Alignment explanation
Indices: 13432209--13433168 Score: 1003
Period size: 368 Copynumber: 2.6 Consensus size: 354
13432199 TTCGAAATAT
* * * *
13432209 GGAGTTCAT-TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
1 GGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACAGAGG
* * * *
13432273 GTTGCGGCAGCATGACCAGCAGCAGGATCGACAGCACGTAGGGGGGATCGGGTCGATCCTCGATT
65 GTT-----A-C--GA-CAGCA--A-GATCGACAGTACGCAGGGGGGATCGGGTCGATCCCCGACT
* * * *
13432338 TGTGCATTCTACCTCTTCAGACGGTTGAGCACCCGCATGCTCGTTTCGTGAGTTGGCTTAGGCAT
118 TGCGCATTCTACCTCTTC-GACGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
* * * * * *
13432403 ACAAAGTTCATTCCATGCCTAAGCCCCAACCAGACCCAGGGTTGGGGTAGCATGATCGGCAGCGG
182 ACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGGGGTAGCAGGATCGGCAGCGG
** * * * *
13432468 GATCGGCAGCACGCAGAGGGGGACCGGGCTGATCCCCAGCTTGCTCATTATGCCTCTTCGATCGG
247 GATCAACAGCACGCAGAGGGGGACCGGGCTGATCCCCAACTTACGCATTATGCCTCTCCGATCGG
* * **
13432533 CTGAGCCCCCGCACGCTCGTTTCGTGGGTTGACCTAGGCATAC
312 CTGAGCACCCACACGCTCGTTTCACGGGTTGACCTAGGCATAC
* *
13432576 GGAGTTCATCCCCAGTCTAAGCATACATAGTTCATTCCTAGTCTAAGATCAGACCGAACAGAGGG
1 GGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACAGAGGG
* * * * * * *
13432641 TTATGGCAGTAGGATCGACAGTACGCAGGGGGGATCAGGTCGATCCCTGACTTGCGCATTCTCCC
66 TTACGACAGCAAGATCGACAGTACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTACC
* * * *
13432706 TCTTCGATCGGCTGAACACCCGCACGCTCGTTTCATGGGTTGGATTAGGCACACAGAGTTCATTC
131 TCTTCGA-CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTC
* *
13432771 CATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGTAGCAGGA-CTGGCAGCGGGATCAACAGCAT
195 CATGTCTAAGCCCCAGCCAGATCGAGGGTTGGGGTAGCAGGATC-GGCAGCGGGATCAACAGCAC
**
13432835 GCAGAGGGGGGTCGGGCTGATCCCCAACTTACGCATTATGCCTCTCCGACGGGCCTTTCCGGTCG
259 GCAGAGGGGGACCGGGCTGATCCCCAACTTACGCATTATGCCTCTCCGA--------T-C-G--G
*
13432900 ACTGAGCACCCACACGCTCGTTTCACGGGTTGACTTAGGCATAC
312 -CTGAGCACCCACACGCTCGTTTCACGGGTTGACCTAGGCATAC
* * *
13432944 GGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATC-GAGG
1 GGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC-CGAACAGAGG
* * *
13433008 GTTACGACAGCAAGATCGAC-G-ACATGCTGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCT
65 GTTACGACAGCAAGATCGACAGTAC--GCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCT
* * * * * * * * ** *
13433071 GCCTCTCCGGCCGACTGAGCGCCCACACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGGTCA
128 ACCTCTTC-GACGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCA
**
13433136 TTCCATGTCTAAGCCCCAGCTGGATCGAGGGTT
192 TTCCATGTCTAAGCCCCAGCCAGATCGAGGGTT
13433169 ATGGCAACGG
Statistics
Matches: 496, Mismatches: 77, Indels: 39
0.81 0.13 0.06
Matches are distributed among these distances:
354 3 0.01
355 195 0.39
358 4 0.01
359 1 0.00
362 1 0.00
363 1 0.00
364 1 0.00
365 1 0.00
366 2 0.00
367 59 0.12
368 224 0.45
369 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (354 bp):
GGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACAGAGGG
TTACGACAGCAAGATCGACAGTACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTACC
TCTTCGACGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCC
ATGTCTAAGCCCCAGCCAGATCGAGGGTTGGGGTAGCAGGATCGGCAGCGGGATCAACAGCACGC
AGAGGGGGACCGGGCTGATCCCCAACTTACGCATTATGCCTCTCCGATCGGCTGAGCACCCACAC
GCTCGTTTCACGGGTTGACCTAGGCATAC
Found at i:13434191 original size:26 final size:26
Alignment explanation
Indices: 13434161--13434213 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13434151 GTTAACTTAG
13434161 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13434187 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13434213 G
1 G
13434214 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13434490 original size:159 final size:158
Alignment explanation
Indices: 13434248--13434690 Score: 401
Period size: 159 Copynumber: 2.8 Consensus size: 158
13434238 CAATAGGATT
* * * * * * * *
13434248 GACAGCACGCAGGGGGAATCGGGTCGATCCCTGGCTTGCGCATTCTGCTTTTCTGGCCGGCTGAG
1 GACAGCACACAGGGGGGACCAGATCGATCCCCGGCTTGTGCATTCTGCTCTTC-GGCCGGCTGAG
* * * * * * *
13434313 CACCCGGATGCCCATTTCGTGGGTTGGCTTAGGCAGAGGGAGTTCATTCCATGTCTAAGCCCCAG
65 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAG
*
13434378 -TCAGACCGAGGGTTGTGGCAGC-GAGACC
130 ACCAGACCGAGGGTTGTGGCAGCAG-GACC
* * *
13434406 GACAGCACACAGAGGGGGACTAGATCGATCCCCGGCTTGTGCATTATGCCTCTTCGGCCGGCTCA
1 GACAGCACACAG-GGGGGACCAGATCGATCCCCGGCTTGTGCATTCTG-CTCTTCGGCCGGCTGA
* * * *
13434471 GTGCCCGCACGCTCATTTCG-GGGCTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-AT
64 GCGCCCGCACGCTCATTTCGTGGG-TTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAC
** * * *
13434533 TGGACCGGATCGAGGGTTGTGGCAGCAGGATC
127 CAGACCAGACCGAGGGTTGTGGCAGCAGGACC
* ** * ** * * * * * *
13434565 GATAGCATGCAGGGGGGACCGGGCCAATCCCCAGCTTGTGCATTCTATCTCTCCGGTCGGTTGAG
1 GACAGCACACAGGGGGGACCAGATCGATCCCCGGCTTGTGCATTCT-GCTCTTCGGCCGGCTGAG
* * *
13434630 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATTCGGAGTTCATTCCATGTCTAAGCA
65 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13434691 TACGGAGTTC
Statistics
Matches: 226, Mismatches: 49, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 100 0.44
159 114 0.50
160 9 0.04
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GACAGCACACAGGGGGGACCAGATCGATCCCCGGCTTGTGCATTCTGCTCTTCGGCCGGCTGAGC
GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
CCAGACCGAGGGTTGTGGCAGCAGGACC
Found at i:13434696 original size:26 final size:26
Alignment explanation
Indices: 13434662--13434740 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
13434652 GTTGGCTTAG
*
13434662 GCATTCGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
13434688 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
13434714 GCATACGGAGTTCATTCC-TAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
13434740 G
1 G
13434741 ATTTTGAGCC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
25 1 0.02
26 48 0.98
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:13435737 original size:159 final size:156
Alignment explanation
Indices: 13435528--13435936 Score: 403
Period size: 156 Copynumber: 2.6 Consensus size: 156
13435518 GGCCAATCCT
** * ** * * * * *
13435528 CGGCTTGTGCATTCTGCCTCTCTGGTCGGCTGAGTGCCTGCACCCCCGTTTCGTGGGTTGGCTTA
1 CGGCTTGCACATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
* * * ** * * **
13435593 GGTATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGTGGGATCG
66 GGCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCAAACC-AAGG--GTGACAGCAGGATCG
* * *
13435656 GTAGCAC-ATAGAGGGGGACTGGGTCGATC-C
126 ATAGCACGA-AGAGGGGGACCGGGCCGATCAC
* * *
13435686 TTGGCTTGCACATTCTGCCTCTTCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
1 -CGGCTTGCACATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
* *
13435751 AGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTGACAGCAGGATCGATAG
65 AGGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAAACCAAGGGTGACAGCAGGATCGATAG
*
13435816 CACGAAGGGGGGGACCGGGCCGATCAC
130 CACGAAGAGGGGGACCGGGCCGATCAC
* * ** * * *
13435843 CGGGTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCTTAGGTTGGCTAA
1 CGGCTTGCACATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
*
13435908 AGCATACGGAGTTCATTCCCAGTCTAAGA
66 GGCATACGGAGTTCATTCCCAGTCTAAGA
13435937 GTTTGAGCCA
Statistics
Matches: 206, Mismatches: 40, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
156 117 0.57
157 2 0.01
158 6 0.03
159 78 0.38
160 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (156 bp):
CGGCTTGCACATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAAACCAAGGGTGACAGCAGGATCGATAGC
ACGAAGAGGGGGACCGGGCCGATCAC
Found at i:13443203 original size:26 final size:26
Alignment explanation
Indices: 13443167--13443219 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13443157 GTTGACTTAG
*
13443167 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13443193 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13443219 G
1 G
13443220 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13443525 original size:159 final size:157
Alignment explanation
Indices: 13443193--13443695 Score: 389
Period size: 159 Copynumber: 3.2 Consensus size: 157
13443183 CCCAGTCTAA
* * **
13443193 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCGGCAGCAGGATTGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCAGACCGGACCGAAGGTTGCGGCAGCAGGACCGACA
* * * * * * ** * *
13443258 GCACGCAGTGGGGACCGAGTCGATCCCCGACTTGCCCATTCTGCCTCTCCGGTTGACTGAGCGCC
65 GCACGCAGGGGGGACCGAGCCAATCCCCGACTTGCACATTATGCCTCTCCAGTCCACTCAACGCC
*
13443323 CGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CGCACGCCCGTTTCGTGGGTTGACTTAG
* * * * * * * *
13443351 GCTTAGGGAATTCATTCCATGTCTAAGCCCCA-ACCGGACTGAAGGTTGTGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCA-GTCTAAG-ACCAGACCGGACCGAAGGTTGCGGCAGCAGGACCGAC
* * * *
13443415 AGCACGCAGAGGGGGACCGGGCCAATCCTCGACTTGCACATTATGGCTCTTCAGTCCACTCAACG
64 AGCACGCAG-GGGGGACCGAGCCAATCCCCGACTTGCACATTATGCCTCTCCAGTCCACTCAACG
* * *
13443480 CCCGCACGCTCGTTTGGTGGGTTGACTTAT
128 CCCGCACGCCCGTTTCGTGGGTTGACTTAG
* *** * * ** * **
13443510 GCATACGGAGTTCATTCCTAATCTAAGATTGGACCAGACCGAGGGTTGTAGCAGCAGGATCGGTA
1 GCATACGGAGTTCATTCC-AGTCTAAGACCAGACCGGACCGAAGGTTGCGGCAGCAGGACCGACA
* * * * * * * * ** * *
13443575 ACACGCAGGGGGAGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC-GGCTGGCTGAGCG
65 GCACGCAGGGGG-GACCGAGCCAATCCCCGACTTGCACATTATGCCTCTCCAGTC-CACTCAACG
* * * * * *
13443639 CCCGCACACTCATTTTGTTGGTTGGCTTAG
128 CCCGCACGCCCGTTTCGTGGGTTGACTTAG
13443669 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
13443696 CATACAGAGT
Statistics
Matches: 271, Mismatches: 66, Indels: 15
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.01
158 61 0.23
159 206 0.76
160 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGACCAGACCGGACCGAAGGTTGCGGCAGCAGGACCGACAG
CACGCAGGGGGGACCGAGCCAATCCCCGACTTGCACATTATGCCTCTCCAGTCCACTCAACGCCC
GCACGCCCGTTTCGTGGGTTGACTTAG
Found at i:13443705 original size:26 final size:26
Alignment explanation
Indices: 13443669--13443721 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13443659 GTTGGCTTAG
*
13443669 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTACCA-GTCTAA
13443695 GCATACAGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
13443721 G
1 G
13443722 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAGTCTAA
Found at i:13444426 original size:26 final size:26
Alignment explanation
Indices: 13444389--13444441 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13444379 GTTGACTTAG
*
13444389 GCATACGGAGTTCATCTCC-AGTCTAA
1 GCATACGAAGTTCAT-TCCTAGTCTAA
13444415 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
13444441 G
1 G
13444442 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:13444723 original size:159 final size:158
Alignment explanation
Indices: 13444455--13444957 Score: 498
Period size: 159 Copynumber: 3.2 Consensus size: 158
13444445 GGACCGAACC
* * ** * * *
13444455 GAGGGTTGTGGCAGTAGGATCGGTAGCACGCAGA-GGGGACCGGGCCGATCCTCGGCTTGCTCAT
1 GAGGGTTGTGGCAGCAGGACCGACAGCACGCAAAGGGGGATCGGGCCGATCCTCGGCTTGCGCAT
* * * * ** * *
13444519 TCTGCCTCTCCAGCCGACTGAGCACCCGCACG-TCCGTTTTGTGGGTTGGCTTAGGCATAGGGAG
66 TCTGCCTCTCCGGTCGGCTAAGTGCCCGCACGCT-CGTTTTATGGGTTGGCTTAGGCATACGGAG
*
13444583 TTCATTCCATGTATAAGCCCCAGTCAGACT
130 TTCATTCCATGTCTAAGCCCCAGTC-GACT
* * *
13444613 GAGGGATGTGGCAG-TGAGACCGACAGCACGCAAAGGGGGATCGGGCCGATCCTCGACTTGCGCA
1 GAGGGTTGTGGCAGCAG-GACCGACAGCACGCAAAGGGGGATCGGGCCGATCCTCGGCTTGCGCA
* * * * * * *
13444677 TTATGCCTCTCTGGTCGGCTCAGTGCCTGCACGCTCATTTTATGGGTTGACTTAGGCATACGAAG
65 TTCTGCCTCTCCGGTCGGCTAAGTGCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAG
** * *
13444742 TTCATTCCCA-GTCTAAG-ATCAGACCGGACC
130 TTCATT-CCATGTCTAAGCCCCAG-TC-GACT
** * * * * * *
13444772 GAGGGTTACGGTAGCAGGATCGACCGCATGC-AAGGGCAGATCGGGCCTATCC-CTGGCTTGCGC
1 GAGGGTTGTGGCAGCAGGACCGACAGCACGCAAAGGG-GGATCGGGCCGATCCTC-GGCTTGCGC
* * *
13444835 ATTCTGCCTCTCCGGTCGGCTAAGTGCCCGCACACTTGTTTCATGGGTTGGCTTAGGCATACGGA
64 ATTCTGCCTCTCCGGTCGGCTAAGTGCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGA
*
13444900 GTTCATTCTATGTCTAAGCCCCAGTCGAACT
129 GTTCATTCCATGTCTAAGCCCCAGTCG-ACT
13444931 GAGGGTTGTGGCAGCAGGACCGACAGC
1 GAGGGTTGTGGCAGCAGGACCGACAGC
13444958 GGGATCGGCA
Statistics
Matches: 274, Mismatches: 60, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 38 0.14
159 227 0.83
160 8 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GAGGGTTGTGGCAGCAGGACCGACAGCACGCAAAGGGGGATCGGGCCGATCCTCGGCTTGCGCAT
TCTGCCTCTCCGGTCGGCTAAGTGCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCAGTCGACT
Found at i:13445104 original size:26 final size:26
Alignment explanation
Indices: 13445075--13445127 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13445065 GTTGACTTAG
*
13445075 GCATACGGAGGTCA-TCCCTAGTCTAA
1 GCATACGAAGGTCATTCCC-AGTCTAA
*
13445101 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGGTCATTCCCAGTCTAA
13445127 G
1 G
13445128 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGGTCATTCCCAGTCTAA
Found at i:13445455 original size:26 final size:26
Alignment explanation
Indices: 13445418--13445470 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13445408 GTTGGCTTAG
13445418 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
13445444 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13445470 G
1 G
13445471 ATCGAACTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13445832 original size:171 final size:171
Alignment explanation
Indices: 13445444--13445842 Score: 385
Period size: 171 Copynumber: 2.3 Consensus size: 171
13445434 CCATGTCTAA
* * * * * *
13445444 GCATACGGAGTTTATTCCCAGTCTAAGATCGAACTGAACCGAGGGTTGCGGTAGCAGGACTAGCA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCGAACTGGACCGAGGGTTACGGCAGCAGGACCAGCA
* * * *
13445509 GCAGGATCGACAGCACACAGAGGGGACCAAGTCGATCCCCTAGCTTGCACGTTCTACCTCTCCGA
66 GCAGGATCGACAACACACAGAGGGGACCAACTCGATCCCCTAGCTTGCACATTATACCTCTCCGA
* * * * *
13445574 CCGGTTGAGCACTCGCACGCTCGTTTCGTGGGTTAGCTCAG
131 CCAGCTCAGCACCCGAACGCTCGTTTCGTGGGTTAGCTCAG
* * * ** * * *
13445615 GCATATGGAGTTCA-TCCAATGCCTAAG-CCCCAGTCGGACCGAGGGTTATGGCAGCAGGACCGG
1 GCATACGGAGTTCATTCCAA-GTCTAAGATCGAACT-GGACCGAGGGTTACGGCAGCAGGACCAG
** * ** *
13445678 CAGTGGGATCGACAACACGCAGAGGGGGACCGAACT-GATCCCC-AGCTTGGGCATTATGCCTCT
64 CAGCAGGATCGACAACACACAGA-GGGGACC-AACTCGATCCCCTAGCTTGCACATTATACCTCT
**
13445741 CCGACCAGCTCAGTGCCCGAACGCTCGTTTCGTGGGTT-GACTCAG
127 CCGACCAGCTCAGCACCCGAACGCTCGTTTCGTGGGTTAG-CTCAG
* * * * * *
13445786 GTATACGGACTTCATTCCAAGTCTAAGATCGGACTGGACTGAGGGTTGCGACAGCAG
1 GCATACGGAGTTCATTCCAAGTCTAAGATCGAACTGGACCGAGGGTTACGGCAGCAG
13445843 AATTGATAGC
Statistics
Matches: 178, Mismatches: 43, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
170 8 0.04
171 145 0.81
172 22 0.12
173 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (171 bp):
GCATACGGAGTTCATTCCAAGTCTAAGATCGAACTGGACCGAGGGTTACGGCAGCAGGACCAGCA
GCAGGATCGACAACACACAGAGGGGACCAACTCGATCCCCTAGCTTGCACATTATACCTCTCCGA
CCAGCTCAGCACCCGAACGCTCGTTTCGTGGGTTAGCTCAG
Found at i:13446190 original size:26 final size:26
Alignment explanation
Indices: 13446153--13446205 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13446143 GTTGGCTTAG
*
13446153 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
13446179 GCATAC-GTAGTTCATTCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
13446205 G
1 G
13446206 ATCGATCCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:13449136 original size:26 final size:26
Alignment explanation
Indices: 13449106--13449158 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13449096 GTTGACTTAG
* *
13449106 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
*
13449132 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
13449158 G
1 G
13449159 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCAAGTCTAA
Found at i:13449278 original size:355 final size:342
Alignment explanation
Indices: 13448569--13449475 Score: 901
Period size: 355 Copynumber: 2.6 Consensus size: 342
13448559 CCCGCACAAT
* * ** * *
13448569 CATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTACCA-GTCTAAGATCAAACTGGATC-GAG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGA-CAGAG
* * * * * * * * *
13448632 GGTTGCGGCAGCAGGATCGACAGCACGTAG-GGGGGATCGGGTCGGTCCTCGGCTTGCACATTCT
64 GGTTGTGGCAGCAGGACCGGCAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTAT
* * ** * * * * * *
13448696 GTCTCTCCGGCCGATTGAACGCCCGGATGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAG
129 GCCTCTCTGGCCGGCTCAGCGCCC----GCACACTCATTTCGTGGGTTGACTTAGGCATACGAAG
* * * * * *
13448761 TTCATTCCATATCGAAGCATACGGAGTTCATTCCAGTCTAAGATCGGATCAGACCGAGGGTTGCG
190 TTCATCCCA-GTCTAAGCATACGAAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
* * *
13448826 ACAACAGGATCGGCAGCACGTAGGGGGGGACCGAGCTGATCCCTGACTTACGCATTCTACCTCTC
254 ACAACAGGATCGGCAGCACGCAGAGGGGGACCGAGCTAATCCCTGACTTACGCATTCTACCTCTC
** * *
13448891 CGATCGACTGAGTGCCCGTACGCT
319 CGATCGACTGAGCACCCGCACGCC
* *
13448915 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACAGAGGG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACAGAGGG
* * *
13448980 TTGTGGCAGCAGGACCGGCAGCGAGATCGGTAGCACGTAGAGAGGGACTGGGCTGATCCTCGGCT
66 TTGTGGCAGCAGGACCGGCAGC---A-C-GT---A-G-AG-G-GGGACCGGGCCGATCCCCGGCT
* * *
13449045 TAG-GCATTATGCCTCTCTGGCCGGTTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCA
119 T-GCGCATTATGCCTCTCTGGCCGGCTCAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCA
* * *
13449109 TACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCAAGTCTAAGATCAGACCGGACTGA
183 TACGAAGTTCAT-CCCAGTCTAAGCATACGAAGTTCATTCC-AGTCTAAGATCAGACCAGACCGA
** * * * * **
13449174 GGGTTGCGGTAGCAGGATCGGCAGCACGCA-AGGGGGATCGGGCTAAT-CCTCGGCTTGTGCATT
246 GGGTTGCGACAACAGGATCGGCAGCACGCAGAGGGGGACCGAGCTAATCCCT-GACTTACGCATT
* * *
13449237 CTGCCTCTCTGATCG-GTCGAGCACCCGCACGCC
310 CTACCTCTCCGATCGACT-GAGCACCCGCACGCC
* * *
13449270 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACAGAGGG
*
13449335 TTGTGGCAGCGGGACCGGCAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGC
66 TTGTGGCAGCAGGACCGGCAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGC
* * * * * *
13449400 CTCTCTGGCCGGCTCAGTGCCCGTACGCTCGTTTCGTTGGTTGACTTATGCATACGAAGTTCATT
131 CTCTCTGGCCGGCTCAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCA-T
*
13449465 CCTAGTCTAAG
195 CCCAGTCTAAG
13449476 ATCGGACCAG
Statistics
Matches: 465, Mismatches: 74, Indels: 47
0.79 0.13 0.08
Matches are distributed among these distances:
342 1 0.00
343 92 0.20
344 2 0.00
345 6 0.01
346 71 0.15
347 1 0.00
349 1 0.00
350 3 0.01
351 3 0.01
352 1 0.00
354 5 0.01
355 185 0.40
356 48 0.10
357 1 0.00
358 1 0.00
359 43 0.09
360 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (342 bp):
CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACAGAGGG
TTGTGGCAGCAGGACCGGCAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGC
CTCTCTGGCCGGCTCAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATC
CCAGTCTAAGCATACGAAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAACAG
GATCGGCAGCACGCAGAGGGGGACCGAGCTAATCCCTGACTTACGCATTCTACCTCTCCGATCGA
CTGAGCACCCGCACGCC
Found at i:13449612 original size:158 final size:154
Alignment explanation
Indices: 13449132--13449635 Score: 489
Period size: 158 Copynumber: 3.2 Consensus size: 154
13449122 CCCAGTCTAA
*
13449132 GCATACGAAGTTCATTCCAAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGGCA
1 GCATACGAAGTTCATTCC-AGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * * *
13449197 GCACGCAAGGGGGA-TCGGGCTAATCCTCGGCTTGTGCATTCTGCCTCTCTGATCGGTCGAGCAC
65 GCACAC-AGGGGGACTCGGGC-GATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGCT-GAGCAG
13449261 CCGCACGC-CCATTTCGTGGGTTGGCTTAG
127 CC-CACGCTCC-TTTCGTGGGTTGGCTTAG
* * ** * * * *
13449290 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGGC
1 GCATACGAAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGC
* * * *
13449354 AGCACGTAGAGGGGGAC-CGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCTGGCCGGCTCAG-
64 AGCAC--ACAGGGGGACTCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTC-GCTGAGC
* * * * *
13449417 TGCCCGTACGCTCGTTTCGTTGGTTGACTTAT
125 AGCCC--ACGCTCCTTTCGTGGGTTGGCTTAG
* * * *
13449449 GCATACGAAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCATGATCGACA
1 GCATACGAAGTTCATTCC-AGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * *
13449514 GCACACAGGGGGCACTAGGGCGATCCCCGGCTTGCACATTCTGCCTCTTTGGTCGACTGAGCAGC
65 GCACACAGGGGG-ACTCGGGCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCG-CTGAGCAGC
*
13449579 CACATGCTCCTTTCGTGGGTTGGCTTAG
128 C-CACGCTCCTTTCGTGGGTTGGCTTAG
13449607 GCATAC-AGAGTTCATTCCCAGTCTAAGAT
1 GCATACGA-AGTTCATT-CCAGTCTAAGAT
13449636 TTTGAGCGAT
Statistics
Matches: 277, Mismatches: 50, Indels: 38
0.76 0.14 0.10
Matches are distributed among these distances:
157 11 0.04
158 138 0.50
159 122 0.44
160 6 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (154 bp):
GCATACGAAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAG
CACACAGGGGGACTCGGGCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGCTGAGCAGCCCA
CGCTCCTTTCGTGGGTTGGCTTAG
Found at i:13450311 original size:26 final size:26
Alignment explanation
Indices: 13450281--13450333 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13450271 GTTGACTTAG
*
13450281 GCATAGGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
13450307 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13450333 G
1 G
13450334 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13451375 original size:25 final size:27
Alignment explanation
Indices: 13451340--13451393 Score: 85
Period size: 25 Copynumber: 2.1 Consensus size: 27
13451330 CATGGGTTGA
13451340 CTTAGGCATACGGAGTTC-TCCCCAGT
1 CTTAGGCATACGGAGTTCATCCCCAGT
*
13451366 CTTA-GCATACGGAGTTCATTCCCAGT
1 CTTAGGCATACGGAGTTCATCCCCAGT
13451392 CT
1 CT
13451394 AAGATCGGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (27 bp):
CTTAGGCATACGGAGTTCATCCCCAGT
Found at i:13451688 original size:159 final size:158
Alignment explanation
Indices: 13451502--13451902 Score: 463
Period size: 158 Copynumber: 2.5 Consensus size: 158
13451492 GAGCGCCCGT
* * *
13451502 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTCCAGTCGGACC
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCTCCAGTCGGACC
*
13451567 GAGGGTTGTGGCAG-AGGGATCGGCAACACGCAGAGGGGGATCAGG-TCGATCCCCAGCTTGCAC
66 GAGGGTTGTGGCAGCA-GGATCGACAACACGCAG-GGGGGATCAGGCT-GATCCCCAGCTTGCAC
* * * *
13451630 GTTATGCCTCTTC-GGCTGGCTCAACGCCTGA
128 ATTATGCCTCTCCAGTC-AGCTCAACGCCTGA
* * * * *
13451661 ATGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTTTAAGAT-CAGATCGGA
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAAGCTCCAG-TCGGA
* * * **
13451724 CTGAGGGTTGTGACAGCAGGATCGACAGCACGCAGGGGGGATCAGGCTGATCCCTGGCTTGCACA
64 CCGAGGGTTGTGGCAGCAGGATCGACAACACGCAGGGGGGATCAGGCTGATCCCCAGCTTGCACA
* * * *
13451789 TTCTGCCTCTCCAGTCAGCTGAGCGCTTGA
129 TTATGCCTCTCCAGTCAGCTCAACGCCTGA
* * *
13451819 ACGTTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAG-CTGGAC
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCTCCAGTC-GGAC
*
13451883 CGAGGGTTGTGGTAGCAGGA
65 CGAGGGTTGTGGCAGCAGGA
13451903 CCGGTAGCGA
Statistics
Matches: 201, Mismatches: 33, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
157 4 0.02
158 111 0.55
159 82 0.41
160 4 0.02
ACGTcount: A:0.20, C:0.24, G:0.31, T:0.25
Consensus pattern (158 bp):
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCTCCAGTCGGACC
GAGGGTTGTGGCAGCAGGATCGACAACACGCAGGGGGGATCAGGCTGATCCCCAGCTTGCACATT
ATGCCTCTCCAGTCAGCTCAACGCCTGA
Found at i:13451843 original size:158 final size:157
Alignment explanation
Indices: 13451366--13452041 Score: 499
Period size: 159 Copynumber: 4.2 Consensus size: 157
13451356 TCTCCCCAGT
* * * ** * ** *
13451366 CTTA-GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAAGGTCATGAAAGCAGGAT
1 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGACAGCAGGAT
* * ** * *
13451430 CGACAGCACGCA-GGGGGACCGGGC-GAATCCCTGATTTGCGCATTCTGCCTTTTCGACCGGCTG
66 CGACAGCACGCAGGGGGGATCAGGCTG-ATCCCTGGCTTGCACATTCTGCCTCTTCG-CCGGCTG
* * *
13451493 AGCGCCCGTACGCCCGTTTCGTGGGTTGG
129 AGCGCCTGAACGCTCGTTTCGTGGGTTGG
* * * *
13451522 CTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCTCCAG-TCGGACCGAGGGTTGTGGCAG-AGG
1 CTTAGGCATACGAAGTTCATTCCCA-GTCTAAGAT-CAGATCGGACCGAGGGTTGTGACAGCA-G
* * ** * * *
13451584 GATCGGCAACACGCAGAGGGGGATCAGG-TCGATCCCCAGCTTGCACGTTATGCCTCTTCGGCTG
63 GATCGACAGCACGCAG-GGGGGATCAGGCT-GATCCCTGGCTTGCACATTCTGCCTCTTC-GCCG
* * * * *
13451648 GCTCAACGCCTGAATGCTCGTTTTGTGGGTTGA
125 GCTGAGCGCCTGAACGCTCGTTTCGTGGGTTGG
* *
13451681 CTTAGGCATACGAAGTTCATTCCCAGTTTAAGATCAGATCGGACTGAGGGTTGTGACAGCAGGAT
1 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGACAGCAGGAT
* * *
13451746 CGACAGCACGCAGGGGGGATCAGGCTGATCCCTGGCTTGCACATTCTGCCTCTCCAGTCAGCTGA
66 CGACAGCACGCAGGGGGGATCAGGCTGATCCCTGGCTTGCACATTCTGCCTCTTC-GCCGGCTGA
* * *
13451811 GCGCTTGAACGTTCGTTTCATGGGTTGG
130 GCGCCTGAACGCTCGTTTCGTGGGTTGG
** *
13451839 CTTAGGCATACGAAGTTCATT-CCATGTCTAAGCCCCAGCT-GGACCGAGGGTTGTGGTAGCAGG
1 CTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGT-G-A-CA-G
* * * * * * *
13451902 ACCGGTAGCGAGATCGACAGCACACAGAGAGGGACCAGGCTGATCCCCGACTTGCGCATTATGCC
60 --C---A--G-GATCGACAGCACGCAG-GGGGGATCAGGCTGATCCCTGGCTTGCACATTCTGCC
* * * * * * **
13451967 TCTCCAGCCTGCTGAGCGCCCGCATGCTCGTTTCATGGGTTAA
116 TCTTC-GCCGGCTGAGCGCCTGAACGCTCGTTTCGTGGGTTGG
*
13452010 CTTAGGCATAC-AGAGTTCATCCCCAGTCTAAG
1 CTTAGGCATACGA-AGTTCATTCCCAGTCTAAG
13452042 CATATGGAGT
Statistics
Matches: 411, Mismatches: 79, Indels: 45
0.77 0.15 0.08
Matches are distributed among these distances:
156 8 0.02
157 53 0.13
158 106 0.26
159 122 0.30
160 7 0.02
161 2 0.00
162 1 0.00
164 1 0.00
167 1 0.00
169 1 0.00
170 16 0.04
171 90 0.22
172 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (157 bp):
CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGACAGCAGGAT
CGACAGCACGCAGGGGGGATCAGGCTGATCCCTGGCTTGCACATTCTGCCTCTTCGCCGGCTGAG
CGCCTGAACGCTCGTTTCGTGGGTTGG
Found at i:13452045 original size:26 final size:26
Alignment explanation
Indices: 13452022--13452093 Score: 135
Period size: 26 Copynumber: 2.8 Consensus size: 26
13452012 TAGGCATACA
13452022 GAGTTCATCCCCAGTCTAAGCATATG
1 GAGTTCATCCCCAGTCTAAGCATATG
13452048 GAGTTCATCCCCAGTCTAAGCATATG
1 GAGTTCATCCCCAGTCTAAGCATATG
*
13452074 GAGTTCATTCCCAGTCTAAG
1 GAGTTCATCCCCAGTCTAAG
13452094 ATCGAATCAG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GAGTTCATCCCCAGTCTAAGCATATG
Found at i:13452619 original size:26 final size:26
Alignment explanation
Indices: 13452541--13452610 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
13452531 GTTGGCTTAG
13452541 GCATACGGAGTTCATTCCATTACTAA
1 GCATACGGAGTTCATTCCATTACTAA
13452567 GCATACGGAGTTCATTCCATTACTAA
1 GCATACGGAGTTCATTCCATTACTAA
*
13452593 GCATACGGAGATCATTCC
1 GCATACGGAGTTCATTCC
13452611 CAGTCTAAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATTACTAA
Found at i:13452639 original size:526 final size:523
Alignment explanation
Indices: 13451912--13453119 Score: 1336
Period size: 526 Copynumber: 2.3 Consensus size: 523
13451902 ACCGGTAGCG
* * * * *
13451912 AGATCGACAGCACACAGAGAGGGACC-AGGCTGATCCCCGACTTGCGCATTATGCCTCTCCAGCC
1 AGATCGACAGAACGCAG-GGGGGACCGA-GCTGAT-CCCGACTTGCGCATTCTGCCTCTCCGGCC
* * ** * * *
13451976 TGCTGAGCGCCCGCA-TGCTCGTTTCATGGGTTAACTTAGGCATACAGAGTTCATCCCCAGTCTA
63 GGCTGAGCGCCCGCACT-CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATTCTA
* * * * * *
13452040 AGCATATGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAATCAGA
126 AGCATATGGAGTTCAT-TCCATTCTAAGCATACGGAGATCATTCCCAGTCTAAGATAGAACCAGA
* * * * * *
13452105 CTGAGGGTTACTG-TAGTAGGATCGGTAGCACGTAGGGGGGATCGGGCCAATCCCCGGCTTACGC
190 CCGAGGGTTAC-GATAGTAGGATCGATAGCACGCAGGGGGGACCGAGCCAATCCCCGGCTTACAC
* * * ** * ** * *
13452169 ATTCTGTCTCTCTGGTCGGTTGAGAGTCCGTACGCCCGTTTCGAT-AGTTGGCTTAGGCATAGGT
254 ATTCTGCCTCTCCGGCCGGCGGAGAGCCCACACGCCCATTTC-ATGAGTTGGCTTAGGCATAGGG
** *
13452233 AGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGTGGGACCGGCAGCACGCAG
318 AGTTCATTCCATGTCTAAGCCCCAGTCAAATCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAG
* * ** *
13452298 AGGGGGATCGGGCCGATCC-CCAACTTGTGCATTATGCCTCTTCGACCGACTCA-TCACCCACAC
383 AGGGGGATCGAGCCGA-CCTCCAACTTGCGCATTACACCTCTCCGACCGACTCAGT-ACCCACAC
* * * *
13452361 ACTCATTCCGTGGGTTGACTTATGCATATGAAGTTCATTCCGAGTCTAAGATCAGACCGAACCGA
446 ACTCATTCCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCAA
*
13452426 GGGTTGCGGTAGC
511 GGGTTGCGGCAGC
** * * **
13452439 AGGATCGGTAGCACGCAGGGGGGACCGAGCTGATCCCGACTTACGCATTCTGCCTCTTTGGCCGG
1 A-GATCGACAGAACGCAGGGGGGACCGAGCTGATCCCGACTTGCGCATTCTGCCTCTCCGGCCGG
*
13452504 CTGAGCGCCCGCACTCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATTACTAAGC
65 CTGAGCGCCCGCACTCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATT-CTAAGC
* *
13452569 ATACGGAGTTCATTCCATTACTAAGCATACGGAGATCATTCCCAGTCTAAGATTAG-ACCGGACC
129 ATATGGAGTTCATTCCATT-CTAAGCATACGGAGATCATTCCCAGTCTAAGA-TAGAACCAGACC
*
13452633 GAGGGTTACGATAGTAGGATCGATAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTACACATT
192 GAGGGTTACGATAGTAGGATCGATAGCACGCAGGGGGGACCGAGCCAATCCCCGGCTTACACATT
* * * *
13452698 CTGCCTCTCCGGCCGGCGGAGCGCCCACACTCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTT
257 CTGCCTCTCCGGCCGGCGGAGAGCCCACACGCCCATTTCATGAGTTGGCTTAGGCATAGGGAGTT
* * * *
13452763 CGTTTCATGTCTAAGCCCTAGTCAAATCGAGGGTTGTGGTAGCGGGACCGGCAGCACGCAGAGGG
322 CATTCCATGTCTAAGCCCCAGTCAAATCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGG
* ***** * * **
13452828 GGATCGAGTCGACCTTTGGTTTGCGCATTACACCTCTCCGACCGGCTCAGTGCCTGCACACTCAT
387 GGATCGAGCCGACCTCCAACTTGCGCATTACACCTCTCCGACCGACTCAGTACCCACACACTCAT
* * * * * *
13452893 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCGGATCGGACCAAGGGTTG
452 TCCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTG
13452958 CGGCAGC
517 CGGCAGC
* * * * * * * *
13452965 AGATTGACAGAACGTAGGGGGGATCG-GGTCGGTCCCTAGCTTGCGCATTCTACCTCTCCGACCG
1 AGATCGACAGAACGCAGGGGGGACCGAGCT-GATCCCGA-CTTGCGCATTCTGCCTCTCCGGCCG
* * * *
13453029 GTTGAGCGCCCAG-ACGCTCATTTCGTGGGGTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
64 GCTGAGCGCCC-GCACTCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-TCTAA
*
13453093 GCATATGGAGCTCATTCCCATTCTAAG
127 GCATATGGAGTTCATT-CCATTCTAAG
13453120 ATCGGACTGG
Statistics
Matches: 566, Mismatches: 100, Indels: 31
0.81 0.14 0.04
Matches are distributed among these distances:
524 2 0.00
525 38 0.07
526 487 0.86
527 25 0.04
528 14 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (523 bp):
AGATCGACAGAACGCAGGGGGGACCGAGCTGATCCCGACTTGCGCATTCTGCCTCTCCGGCCGGC
TGAGCGCCCGCACTCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATTCTAAGCAT
ATGGAGTTCATTCCATTCTAAGCATACGGAGATCATTCCCAGTCTAAGATAGAACCAGACCGAGG
GTTACGATAGTAGGATCGATAGCACGCAGGGGGGACCGAGCCAATCCCCGGCTTACACATTCTGC
CTCTCCGGCCGGCGGAGAGCCCACACGCCCATTTCATGAGTTGGCTTAGGCATAGGGAGTTCATT
CCATGTCTAAGCCCCAGTCAAATCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGAT
CGAGCCGACCTCCAACTTGCGCATTACACCTCTCCGACCGACTCAGTACCCACACACTCATTCCG
TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGC
AGC
Found at i:13453107 original size:26 final size:26
Alignment explanation
Indices: 13453067--13453119 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13453057 GGTGGCTTAG
*
13453067 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCAT-TCTAA
*
13453093 GCATATGGAGCTCATTCCCATTCTAA
1 GCATACGGAGCTCATTCCCATTCTAA
13453119 G
1 G
13453120 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCATTCTAA
Found at i:13453774 original size:26 final size:26
Alignment explanation
Indices: 13453745--13453797 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13453735 GTTGGCTTAG
* *
13453745 GCATACGGAGTTTATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
13453771 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
13453797 G
1 G
13453798 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:13454161 original size:26 final size:26
Alignment explanation
Indices: 13454125--13454177 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13454115 GTTGACTTAG
13454125 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
13454151 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
13454177 G
1 G
13454178 ATAGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:13454458 original size:159 final size:158
Alignment explanation
Indices: 13454289--13454653 Score: 364
Period size: 157 Copynumber: 2.3 Consensus size: 158
13454279 CCCCCACGTC
* * * *
13454289 CGTTTTGTGGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAG-ACCGAGG
1 CGTTTCGTGGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAAGCACCAGACAGAACCGAGG
** * ** ** * *
13454353 GTTGTGGCAGTGGGACCGGTAGCACGTAGAGAGGGACCG-GGTCGATCCCCGGCTTGCGCATTAT
66 GTTACGACAGCAGGACCGACAGCACGTAG-G-GGGACCGAGCT-GATCCCCGGCTTACGCATTAT
* *
13454417 GCCTTTCTGATCGACTCAACGCTCGAACACT
128 GCCTCTCTGATCGACTCAACGCCCGAACACT
* * * * *
13454448 CGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACCGAG
1 CGTTTCGTGGGTTGGCTTAGTCATACGGAGTTCATT-CCATGTCTAAGCACCAGACAGAACCGAG
* * * *
13454511 GGTTACGACAGCAGGATCGACAGCACGTAGGGGGACCGAGCTGGTCCTCGGCTTACGCATTCTGC
65 GGTTACGACAGCAGGACCGACAGCACGTAGGGGGACCGAGCTGATCCCCGGCTTACGCATTATGC
* * * * *
13454576 CTCTCTGGTCGACTGAGCGCCCGGACGCT
130 CTCTCTGATCGACTCAACGCCCGAACACT
*
13454605 CGTTTCATGGGTTGG-TTGAGGT-ATACGGAGTTCATTCCATGTCTAAGCA
1 CGTTTCGTGGGTTGGCTT-A-GTCATACGGAGTTCATTCCATGTCTAAGCA
13454654 TATAGAGTTC
Statistics
Matches: 167, Mismatches: 32, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
156 5 0.03
157 82 0.49
158 10 0.06
159 67 0.40
160 3 0.02
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
CGTTTCGTGGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAAGCACCAGACAGAACCGAGG
GTTACGACAGCAGGACCGACAGCACGTAGGGGGACCGAGCTGATCCCCGGCTTACGCATTATGCC
TCTCTGATCGACTCAACGCCCGAACACT
Found at i:13455175 original size:881 final size:870
Alignment explanation
Indices: 13453505--13455562 Score: 2259
Period size: 881 Copynumber: 2.3 Consensus size: 870
13453495 CATGCATAAG
* * * * *
13453505 GGGACCGGGCTGATCCCTGGCTTCGCATTATGCCTCTCCGACCGACTCAACACCCGAATGCTCGT
1 GGGACCGGGC-GATCCCTGGCTTCGCATTATGCCTTTCAGATCGACTCAACGCCCGAACGCTCGT
* * * *
13453570 TTCGTGGGTTGACTTAGGCATACGGAGTTTATTTCCAGTCTAAGATCGGACCGAATCGAGGGTTA
65 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTA
** * * * * * *
13453635 CGGTAGCAAGATTGACAGCACATAGGGGCGATTG-GGTCAATCCTCGGCTTGCACATTCTGCCTC
130 CGACAGCAGGATCGACAGCACGTAGGGG-GA-CGAGCT-AATCCTCGGCTTGCGCATTCTGCCTC
** *
13453699 TCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCA
192 TCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* * * * * *
13453764 TGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTACGGCCGCAAG
257 TGTCTAAGCATAAG-AGTTCATTCCCAATCTAAGATCGAACAGGACAGAGGGTTACGGCCGCAAG
* * * *** * *
13453829 ACCAGCAGTAGCATCAACAGCATGTAGGGGGGATCGGGTCGATCCCAGGCTTGCACATTTTGCCT
321 ACCAGCAGCAGCATCAACAGCACGTAGGAGGGATCGAACCGATCCCAGGCTTACACATTTTGCAT
* ** *** * *
13453894 CTCCTGCCGGCCTCTCGCCTGGACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCC
386 CTCCTGCCGGACTAGCGCCCACACGCTAGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCC
** ** *
13453959 ATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGTAGCAGGACCAGTAGCGAGATTGACAGCACGT
451 ATGTCTAAGCCCCAACCAAACCAAGGGTTGTGGCAGCAGG--CAGTA-C--GA-TGACAGCACGT
* * * * * * * * *
13454024 AGAGTGGGATCGGGCTGATCCCTGACTTGCGCGTCATGCCTCTTCAGTTGGCTTCTCTGGCCGAC
510 AAAGGGGGATCGGGCTGATCCCCGACTTACGCATCATGCCTCTTCAGTAGGCTTCTCCGACAGAC
*
13454089 TGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCA
575 TGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCAAACGGAGTTCATCCCTAGTCTAAGCA
* * * * * ** * *
13454154 TACGGAGTTCATTCCTAGTCTAAGATAGGATCGGATAGAGGGTTACGGTAGTAGGATCGACAGCA
640 TACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACAGAGGGTTAAGCCAGCAAGATCGACAGCA
* * * *
13454219 CGTAGGGGGGACCGGGCGGATCCCCGACTTGCGCATTCTACCTCTCCAACCGGTTGAGTGCCCCC
705 CGCAGGGGGGACCGGGCGGATCCCCGACTTGCACATTCTACCTCTCCAACCGGCTGAGCGCCCCC
** *
13454284 ACGTCCGTTTTGTGGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACC
770 ACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACC
* * * ** *
13454349 GAGGGTTGTGGCAGTGGGACCGGTAGCACGTAGAGA
835 GAGGGTTATGGCAGCGGGACCGGTAACACACAGAAA
* * * *
13454385 GGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTTTCTGATCGACTCAACGCTCGAACACTCG
1 GGGACCGGG-CGATCCCTGGCTT-CGCATTATGCCTTTCAGATCGACTCAACGCCCGAACGCTCG
*
13454450 TTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTT
64 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTT
** *
13454515 ACGACAGCAGGATCGACAGCACGTAGGGGGACCGAGCTGGTCCTCGGCTTACGCATTCTGCCTCT
129 ACGACAGCAGGATCGACAGCACGTAGGGGGA-CGAGCTAATCCTCGGCTTGCGCATTCTGCCTCT
* * * * *
13454580 CTGGTCGACTGAGCGCCCGGACGCTCGTTTCATGGGTTGG-TTGAGGTATACGGAGTTCATTCCA
193 CCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT-AGGCATACGGAGTTCATTCCA
*
13454644 TGTCTAAGCATATAGAGTTCATTCCCAATCTAAGATCGAATCAGGATAGAGGGTTACGGCAGCAA
257 TGTCTAAGCATA-AGAGTTCATTCCCAATCTAAGATCGAA-CAGGACAGAGGGTTACGGC--C--
* * * *
13454709 GATCGGTAGCAGGACCAGCAGCAGGATCGATAGCACGTAGGAGGGA-CTGAACCGGA-CCCCGGC
316 G--C---A--A-GACCAGCAGCAGCATCAACAGCACGTAGGAGGGATC-GAACC-GATCCCAGGC
* * *
13454772 TTACGCATTTTGCATCT-CTGGCC-GATTGAGCGCCCACACGCTAGTTTCATTGGTTGGCTTAGG
371 TTACACATTTTGCATCTCCT-GCCGGACT-AGCGCCCACACGCTAGTTTCATGGGTTGGCTTAGG
* *
13454835 CATAC-AGAGTTCATTCCATGTCTAAGCCCTAACCAAACCGAGGGTTGTGGCAGCAGG-A-T-C-
434 CATACGA-AGTTCATTCCATGTCTAAGCCCCAACCAAACCAAGGGTTGTGGCAGCAGGCAGTACG
* * * *
13454895 A-G-CAGCACGTAAAGGGGGATTGGGCTGATCCCCGGCTTACGCATTATGCCT-TTCCGGTAGGC
498 ATGACAGCACGTAAAGGGGGATCGGGCTGATCCCCGACTTACGCATCATGCCTCTT-CAGTAGGC
* * * * ** *
13454957 TTCTCCGATAGACTGAGCGCTCGTATGCTCGTTTCGTGGGTTGACTTAGGCAAATGGAGTTCATC
562 TTCTCCGACAGACTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCAAACGGAGTTCATC
13455022 CCTAGTCTAAGCATACGGAGTTCATTCCCAGTCT-AGAATCA-GACCAGACCA-AGGGTTATAGC
627 CCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-AGGACCAGA-CAGAGGGTTA-AGC
* * * * *
13455084 CA-CAAGATCGGCCA-CACGCAGGGGGGACCGGGCTGATCCTCGACTTGCACATTCTGCCTCTTC
688 CAGCAAGATC-GACAGCACGCAGGGGGGACCGGGCGGATCCCCGACTTGCACATTCTACCTCTCC
** **
13455147 GGCCGGCTGAGCGCCCGTACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
752 AACCGGCTGAGCGCCCCCACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
13455212 CTAAGCCCCAGTCAGACCGAGGGTTATGGCAGCGGGACCGGTAACACACAGAAA
817 CTAAGCCCCAGTCAGACCGAGGGTTATGGCAGCGGGACCGGTAACACACAGAAA
* * * * * * *
13455266 GGGATCGAGCCAATCCCTGACTTACGCATTATGCCTCTTCAG-TCGGCTCAGCGCCCGCACGCTC
1 GGGACCG-GGCGATCCCTGGCTT-CGCATTATGCCT-TTCAGATCGACTCAACGCCCGAACGCTC
* * *
13455330 GTTTCGTGGGTTAACTTATGCATACGAAGTTCATTCCCAGTCTAAGATCAGACC-AGACCGAGGG
63 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGG
*** * * * *
13455394 TCGTGACAGCAGGATCGACAGCACGTAGAGAGGGACTAGGCCAATCCTCGACTTGCGTATTCTGC
127 TTACGACAGCAGGATCGACAGCACGTAG-G-GGGACGA-GCTAATCCTCGGCTTGCGCATTCTGC
* *
13455459 CTCTCCGGTTGGCTGAGGGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
189 CTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
*
13455524 CCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGAT
254 CCATGTCTAAGCATA-AGAGTTCATTCCCAATCTAAGAT
13455563 TTTGAGCCAC
Statistics
Matches: 985, Mismatches: 157, Indels: 69
0.81 0.13 0.06
Matches are distributed among these distances:
879 2 0.00
880 138 0.14
881 566 0.57
882 16 0.02
883 117 0.12
884 3 0.00
885 1 0.00
887 2 0.00
889 1 0.00
890 2 0.00
892 7 0.01
893 128 0.13
894 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (870 bp):
GGGACCGGGCGATCCCTGGCTTCGCATTATGCCTTTCAGATCGACTCAACGCCCGAACGCTCGTT
TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTAC
GACAGCAGGATCGACAGCACGTAGGGGGACGAGCTAATCCTCGGCTTGCGCATTCTGCCTCTCCG
GTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCATAAGAGTTCATTCCCAATCTAAGATCGAACAGGACAGAGGGTTACGGCCGCAAGACCAG
CAGCAGCATCAACAGCACGTAGGAGGGATCGAACCGATCCCAGGCTTACACATTTTGCATCTCCT
GCCGGACTAGCGCCCACACGCTAGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTC
TAAGCCCCAACCAAACCAAGGGTTGTGGCAGCAGGCAGTACGATGACAGCACGTAAAGGGGGATC
GGGCTGATCCCCGACTTACGCATCATGCCTCTTCAGTAGGCTTCTCCGACAGACTGAGCACCCGC
ACACTCGTTTCGTGGGTTGACTTAGGCAAACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATAGGACCAGACAGAGGGTTAAGCCAGCAAGATCGACAGCACGCAGGGGGGA
CCGGGCGGATCCCCGACTTGCACATTCTACCTCTCCAACCGGCTGAGCGCCCCCACACCCGTTTT
GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTATGG
CAGCGGGACCGGTAACACACAGAAA
Found at i:13455339 original size:159 final size:160
Alignment explanation
Indices: 13455119--13455536 Score: 459
Period size: 159 Copynumber: 2.6 Consensus size: 160
13455109 GACCGGGCTG
* * * * * * *
13455119 ATCCTCGACTTGCACATTCTGCCTCTTCGGCCGGCTGAGCGCCCGTACACCCGTTTTGTGGGTTG
1 ATCCTCGACTTACGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * * * *
13455184 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGACCGAGGGTTATGGCAGCGGG
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTCATGACAGCAGG
**
13455248 ACCGGTAACACACAGAAAGGGATCGA-GCCA
131 ACCGACAACACACAGAAAGGGA-CGAGGCCA
* * *
13455278 ATCC-CTGACTTACGCATTATGCCTCTTCAGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTT
1 ATCCTC-GACTTACGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
** * * * *
13455342 AACTTATGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTCGTGACAGCA
65 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTCATGACAGCA
* * ** * *
13455405 GGATCGACAGCACGTAGAGAGGGACTAGGCCA
129 GGACCGACAACACACAGAAAGGGACGAGGCCA
* * * * *
13455437 ATCCTCGACTTGCGTATTCTGCCTCTCCGGTTGGCTGAGGGCCCGCACGCTCGTTTCGTGGGTTG
1 ATCCTCGACTTACGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
13455502 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13455537 TACGGAGTTC
Statistics
Matches: 210, Mismatches: 42, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
158 9 0.04
159 196 0.93
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (160 bp):
ATCCTCGACTTACGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTCATGACAGCAGG
ACCGACAACACACAGAAAGGGACGAGGCCA
Found at i:13455558 original size:26 final size:26
Alignment explanation
Indices: 13455508--13455560 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13455498 GTTGGCTTAG
*
13455508 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13455534 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13455560 G
1 G
13455561 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13462142 original size:26 final size:26
Alignment explanation
Indices: 13462089--13462144 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
13462079 TGGGATGACT
* *
13462089 TAAGCTTACAGAGTTCATCCCTAGTC
1 TAAGCATACAGAGTTCATCCCTAATC
*
13462115 TAAGCATACGGAGTTCATTCCC-AATC
1 TAAGCATACAGAGTTCA-TCCCTAATC
13462141 TAAG
1 TAAG
13462145 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCTAATC
Done.