Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 97 of 402
Found at i:13462592 original size:158 final size:159
Alignment explanation
Indices: 13462118--13462620 Score: 538
Period size: 158 Copynumber: 3.2 Consensus size: 159
13462108 CCTAGTCTAA
* * * * *
13462118 GCATACGGAGTTCATTCCCA-ATCTAAGATCAGACCGGACCAAGGGTTACGGCAGCAGGATCGAT
1 GCATACGGAGTTCATTCCTATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
13462182 AGCACACAGGGGGGACCGAGCCAATCTCCGGCTTGCGCATTCTGCCTC-TCTGATCGGCTGAA-C
66 AGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGA-CGGCT-AAGC
** *
13462245 GCCGGCACGCCCGTTTCGTGGGTTGGCTTAG
129 GCCCTCACGCTCGTTTCGTGGGTTGGCTTAG
* ** ** * * *
13462276 GCATAGGGAGTTCATTCC-ATGTCTAAGCCCCAG-CCGGATAGAGGGTTGTGGTAGCGGGATCGA
1 GCATACGGAGTTCATTCCTATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA
* ** * * * * *
13462339 CAACTTGTAGAGGGGAATCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGACGGCTCAGC
65 CAGCACGCAG-GGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGACGGCTAAGC
*
13462404 GCCCAT-ACGCTCGTTTCGTGGGTTGACTTAG
129 GCCC-TCACGCTCGTTTCGTGGGTTGGCTTAG
* *
13462435 GCATACGGAGTTCATTCCTA-GTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATTGAC
1 GCATACGGAGTTCATTCCTATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
13462499 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTC-AACCGACTAAGCG
66 AGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGA-CGGCTAAGCG
* *
13462563 CCCTCATGCTCGTTTCATGGGTTGGCTTAG
130 CCCTCACGCTCGTTTCGTGGGTTGGCTTAG
13462593 GCATACGGAGTTCATT-CTATGTCTAAGA
1 GCATACGGAGTTCATTCCTATGTCTAAGA
13462621 ATAGGAGTTC
Statistics
Matches: 279, Mismatches: 55, Indels: 22
0.78 0.15 0.06
Matches are distributed among these distances:
157 6 0.02
158 147 0.53
159 121 0.43
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCTATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
AGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGACGGCTAAGCGC
CCTCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13463001 original size:26 final size:26
Alignment explanation
Indices: 13462972--13463024 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13462962 GTTGACTTAG
13462972 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
13462998 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
13463024 G
1 G
13463025 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:13463629 original size:26 final size:26
Alignment explanation
Indices: 13463593--13463671 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
13463583 GTTGACTTAG
* *
13463593 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATATGGAGTTCATTC-CCAATCTAA
13463619 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
*
13463645 GCATATGGAGTTCATTCCCAAGCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
13463671 G
1 G
13463672 ATTGGACCGG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 47 0.96
27 2 0.04
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAATCTAA
Found at i:13463939 original size:158 final size:156
Alignment explanation
Indices: 13463681--13464144 Score: 502
Period size: 158 Copynumber: 2.9 Consensus size: 156
13463671 GATTGGACCG
* * * * *
13463681 GATCGAGGGTTGCGACAGCAGGATCGACTGCACGCAGGGGGGACCAGGCCGATCCCTGGCTTGCG
1 GATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCAAGCCGATCCCCGGCTTGCG
* * * * * *
13463746 CATTCTGCCTCTCCAGTCGGCTGAGCGACCGCACGCCCGTTTCGTGGGTTGGCTTAGGTATAGGG
66 CATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
*
13463811 AGTTCATTCCATGTCTAACCCCAGTCA
131 AGTTCATTCCATGTCTAACCCCAAT-A
* * * *
13463838 GATCGAGGGTTATGGCAGCAGGACCGACAGCACGCAGAGGGGGACCAAGTCGATCCCCGTCTTGC
1 GATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGACCAAGCCGATCCCCGGCTTGC
* * * *
13463903 GCATTATGCCTCTTCGGTCGGCTCG-GCGCCCGCACGCTTGTTTCGTGGGTTGACTTATGCATAC
65 GCATTCTGCCTCTTCGGTCGGCT-GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * ** *
13463967 GAAGTTCATTCCCA-GTCTAAGATCGGAATG
129 GGAGTTCATT-CCATGTCT-A-ACCCCAATA
* ** * * * * *
13463997 GATTGAGGGTTGTGGTTGCGGGATCGACAGCACGTAGGGGGGACCGAGCCAATCCCCGGCTTGTG
1 GATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCAAGCCGATCCCCGGCTTGCG
* * * *
13464062 CATTCTACCT-TTCCGGTCGACTGAGCGCCCGTACGCTCGTTTCGCGGGTTGGCTTAGGCATACG
66 CATTCTGCCTCTT-CGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
*
13464126 GAGTTTATTCCATGTCTAA
130 GAGTTCATTCCATGTCTAA
13464145 GCATACGGAG
Statistics
Matches: 252, Mismatches: 47, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
156 1 0.00
157 39 0.15
158 173 0.69
159 35 0.14
160 4 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (156 bp):
GATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCAAGCCGATCCCCGGCTTGCG
CATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAACCCCAATA
Found at i:13464148 original size:26 final size:26
Alignment explanation
Indices: 13464119--13464171 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13464109 GTTGGCTTAG
*
13464119 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13464145 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13464171 G
1 G
13464172 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13465228 original size:26 final size:26
Alignment explanation
Indices: 13465192--13465243 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13465182 GTTGACTTAG
13465192 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
13465218 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13465244 CATCAGACCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13465580 original size:159 final size:157
Alignment explanation
Indices: 13465218--13465584 Score: 378
Period size: 159 Copynumber: 2.3 Consensus size: 157
13465208 CCTAGTCTAA
* * * * * *
13465218 GCATACGGAGTTCATTCCCAGTCTAACATCAGACCAAACTGAGGGTTGCGATAGCAGGATCGGCA
1 GCATA-GGAGTTCATTCCCAGTCTAAGATCAGATCGAACTGAGGGTTGCGACAGCAAGACCGGCA
* * * * * *
13465283 GCACGCAGGGGGGACCGAGCCTATCCTCGGCTTACGCATTTTGCCTCTCCGATCGACTAAGTGCC
65 GCACGCAGGGGGGACCGAGCCGATCCTCGGCTCACACATTATGCCTCTCCGACCGACTAAGCGCC
* *
13465348 CGCACGCCCGTTTCATGCGTTGGCTTAG
130 CACACGCCCGTTTCATGCGTTGACTTAG
* ** * * * *
13465376 GTATAGTGAGTTCATT-CCATGTCTAAGCCCTAG-TTGAACCGAGGGTTGTGGCAGCAAGACCGG
1 GCATAG-GAGTTCATTCCCA-GTCTAAGATC-AGATCGAACTGAGGGTTGCGACAGCAAGACCGG
* * * * * * *
13465439 TAGCACGTAGAGGGGGATCGGGCCGATCCTCGGCTCGCACATTATGCCTCTCCGACCGGCTCAGC
63 CAGCACGCAG-GGGGGACCGAGCCGATCCTCGGCTCACACATTATGCCTCTCCGACCGACTAAGC
* *
13465504 GCCCACACGCTCGTTTCATGGGTTGACTTAG
127 GCCCACACGCCCGTTTCATGCGTTGACTTAG
* *
13465535 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCG
1 GCATA-GGAGTTCATTCCCAGTCTAAGATCAGATCGAACTGAGGGTTGCG
13465585 GTAGCAGGAT
Statistics
Matches: 164, Mismatches: 38, Indels: 13
0.76 0.18 0.06
Matches are distributed among these distances:
157 4 0.02
158 50 0.30
159 106 0.65
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATAGGAGTTCATTCCCAGTCTAAGATCAGATCGAACTGAGGGTTGCGACAGCAAGACCGGCAG
CACGCAGGGGGGACCGAGCCGATCCTCGGCTCACACATTATGCCTCTCCGACCGACTAAGCGCCC
ACACGCCCGTTTCATGCGTTGACTTAG
Found at i:13466102 original size:26 final size:26
Alignment explanation
Indices: 13466072--13466124 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13466062 GTTGACTTAG
*
13466072 GCATACGAAGTTCATCCCCTGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13466098 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13466124 G
1 G
13466125 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13466610 original size:26 final size:27
Alignment explanation
Indices: 13466572--13466625 Score: 85
Period size: 26 Copynumber: 2.0 Consensus size: 27
13466562 GTTGGCTTAT
13466572 GCATACTGGAGTTCATT-CCACGTCTAA
1 GCATACTGGAGTTCATTCCCA-GTCTAA
13466599 GCATAC-GGAGTTCATTCCCAGTCTAA
1 GCATACTGGAGTTCATTCCCAGTCTAA
13466625 G
1 G
13466626 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (27 bp):
GCATACTGGAGTTCATTCCCAGTCTAA
Found at i:13466736 original size:185 final size:184
Alignment explanation
Indices: 13466414--13466784 Score: 530
Period size: 185 Copynumber: 2.0 Consensus size: 184
13466404 GTTGACTGTG
* * * * * *
13466414 GCATACTGAGTTCATTTCTAGTCTAAGATCAAACCGGATCGAGGGTTACGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTACGGCAGCAGGATCGACA
** *
13466479 GTACGCAGGGGGGACCAGACCGATCCCCAGCTTGTGCATTCTGCCTCTCCAACCGACTGAGCGCC
66 ACACGCAGGGGGGACCAGACCGATCCCCAGCTTGTGCATTCTGCCTCTCCAACCGACTGAGCACC
*
13466544 TGCACGCTCGTTTCGTGGGTTGGCTTATGCATACTGGAGTTCATTCCACGTCTAA
131 TGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GGAGTTCATTCCACGTCTAA
*
13466599 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * ** *
13466664 ACATGCAGGGGGGACCGGATCGAT-CCCTGACTTGTGCATTCTGCCTCTCCGGCTGACTGAGCA-
66 ACACGCAGGGGGGACCAGACCGATCCCCAG-CTTGTGCATTCTGCCTCTCCAACCGACTGAGCAC
*
13466727 CTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CT-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAA
13466783 GC
1 GC
13466785 CCCAACCGGA
Statistics
Matches: 165, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
184 27 0.16
185 138 0.84
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTACGGCAGCAGGATCGACA
ACACGCAGGGGGGACCAGACCGATCCCCAGCTTGTGCATTCTGCCTCTCCAACCGACTGAGCACC
TGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAA
Found at i:13467059 original size:868 final size:863
Alignment explanation
Indices: 13465179--13468123 Score: 3152
Period size: 868 Copynumber: 3.4 Consensus size: 863
13465169 GCTCGTTTGG
*
13465179 TGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13465244 CATCAGACCA-AACTGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGGGGGGACCGAGCCT-AT
66 GATCAGACCAGATC-GAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGATCGAG-CTGAT
** * ** * * *
13465307 -CCTCGGCTTACGCATTTTGCCTCTCCGA-TCGACTAAGTGCCCGCACGCCCGTTTCATGCGTTG
129 CCCT-GGCTTGTGCATTCTGCCTCTCCGACT-GACTAAGCACCCACACGCCCGTTTCGTGGGTTG
* * ** * * **
13465370 GCTTAGGTATAGTGAGTTCATTCCATGTCTAAGCCCTAGTTGAACCGAGGGTTGTGGCAGCAAGA
192 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAACGGGA
* * * * * *
13465435 CCGGTAGCACGTAGAGGGGGATCGGGCCGAT-CCTCGGCTCGCACATTATGCCTCTCCGACCGGC
257 -CTGCAGCATGCAGAGGGGGATCGGGCCGATCCCT-GGCTTGCGCATTATGCCTCTCCGACCGGC
* *
13465499 TCAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATA-TGGAGTTCATTCCCAGTCTAAGA
320 TCAGCGCCGA-ACGCTCGTTTCGTGGGTTGACTTAGGCATACT-GAGTTCATTCCCAGTCTAAGA
* * * * ** * * *
13465563 TCGGATCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCATACAGGGGGGATCAGGATGGTACCC
383 TCAGATCGGACTGAGGGTTACGGTAGTAGGATCGACAGTACGCAGGGGGGATCA-GACGATCCCC
* * * *
13465628 GACTTGTGCATTCTGCCTCTCCGGCCTGCTGAGCGCCCGCACGTTCGTTTTATGGGTTGGCTTAG
447 G-CTTGTGCATTCTGCCTCTCCGACC-GCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAA
* * *
13465693 GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTAAAAGATCAAATCGGAC
510 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCAGATCGGAC
* * *
13465758 TGATGGTTGTGGCAGCAGGACCAGTAGCAGGATTGGCA-GCACGCAGGGGGACCGGGTCGATCCC
575 CGAAGGTTGTGGCAGCAGGATC-GTAGCA-GA----CATGCA-GC-GGGGGACC-GGTCGAT-CC
* * * *
13465822 CAGCTTGTGCATTCTGCCTCTCCAGTTGACTTAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTA
630 CAACTTGTGCATTCTGCCTCTCCGGCTGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTA
* * *
13465887 GGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCAGGACCGGT
695 GGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-CGAGGGTTGTGGCAGCAGGACCGGT
** * * * * * **
13465952 AGAAAGATCGGCAGTAAGTAGAAGGGGATC-AGGCTGAACCCCGGCTCGCACATTATACCT-TTC
759 A-AGGGATCGACAGCAAGTAGAGGGGGATCGA-GCTGATCCCCGGCTTGTGCATTATACCTCTT-
* * * * *
13466015 TGACCGACCTTTCTGGCCGACTGAGTGCCCGCAC-ACTTGTTTCA
821 TGA-CGACCTCTCTGGTCGGCTGAGTGCCCGTACGA-TCGTTTCA
* *
13466059 TGGGTTGACTTAGGCATACGAAGTTCATCCCCTGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
13466124 GATCAGACCGGACCGAGGTTTGCGATAGCAGGATTGACAGCACGCAGGGGGGATCGGGCTTATCC
66 GATCAGACCAGATCGAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGATCGAGCTGATCC
* * * **
13466189 CTGGCTTGTGCATTCTGCCTCTCCGACTGGCTGAGCACCCGCACGTTCGTTTCGTGGGTTGGCTT
131 CTGGCTTGTGCATTCTGCCTCTCCGACTGACTAAGCACCCACACGCCCGTTTCGTGGGTTGGCTT
* *
13466254 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAAGGCTGTGGCAACGGGACTAG
196 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAACGGGACT-G
** * * * * *
13466319 CATTATGCAGAAGAGGATCGAGCCGATCCCTGGATTGCGCATTATGCCTCT-CGATCGGCTCAGC
260 CAGCATGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGC
* * * * *
13466383 ACCTGAACGTTCGTTTCGTGGGTTGACTGT-GGCATACTGAGTTCATTTCTAGTCTAAGATCAAA
325 GCC-GAACGCTCGTTTCGTGGGTTGACT-TAGGCATACTGAGTTCATTCCCAGTCTAAGATCAGA
* *
13466447 CCGGA-TCGAGGGTTACGGTAGTAGGATCGACAGTACGCAGGGGGGACCAGACCGATCCCCAGCT
388 TCGGACT-GAGGGTTACGGTAGTAGGATCGACAGTACGCAGGGGGGATCAGA-CGATCCCC-GCT
* * * *
13466511 TGTGCATTCTGCCTCTCCAACCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTATGCAT
450 TGTGCATTCTGCCTCTCCGACCG-CTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAAGCAT
* * *
13466576 ACTGGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
514 AC-GGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCAGATCGGACCGA
* ** *
13466641 GGGTTACGGCAGCAGGATCG-A-CA-ACATGCAG-GGGGGACCGGATCGATCCCTGACTTGTGCA
578 AGGTTGTGGCAGCAGGATCGTAGCAGACATGCAGCGGGGGACCGG-TCGATCCC-AACTTGTGCA
*
13466702 TTCTGCCTCTCCGGCTGACTGAGCACTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
641 TTCTGCCTCTCCGGCTGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
* * *
13466767 TTCATTCCATGTCTAAGCCCCAACCGGACGAGGGTTGTGGCAGTAGGACCGATAATGGGATCGAC
706 TTCATTCCATGTCTAAGCCCCAGCCGGACGAGGGTTGTGGCAGCAGGACCGGTAA-GGGATCGAC
* * * * *
13466832 AGCATGCAGAGGGGGATCGAGCTGATCCCCGGCTTGTGCATTATGCCTCTTTGATCGGCCTCTCC
770 AGCAAGTAGAGGGGGATCGAGCTGATCCCCGGCTTGTGCATTATACCTCTTTGA-CGACCTCTCT
*
13466897 GGTCGGCTGAGTGCCCGTGCGATCGTTTCA
834 GGTCGGCTGAGTGCCCGTACGATCGTTTCA
* * ** *
13466927 TAGGTTGACTTAGGCATACGGAGTTCGTCCCCAGTCTAAGCATTTGGAGTTCATTCCTAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
13466992 AATCATATCAGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGTAAGGGGGATCGAGCTGATCC
66 GATCAGACCAGATCGAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGATCGAGCTGATCC
* * * * * * * *
13467057 CTGACTTCTGCATTCTGCCTCTGCGACTGGA-TGAGCACCTACACGTCCGTTTCGTCGATTGGCT
131 CTGGCTTGTGCATTCTGCCTCTCCGACT-GACTAAGCACCCACACGCCCGTTTCGTGGGTTGGCT
* * * * *
13467121 TAGGCATTGGGAGTTTATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTATGGCAACGGGACCT
195 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAACGGGA-CT
* * * *
13467186 GCAGCATGCAGAGGGGGACCGGGTCGATCCCTGGCTTACGCATTATGCCTCTCCAACCGGCTCAG
259 GCAGCATGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTCAG
* *
13467251 CGCCCGAACACTCATTTCGTGGGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCAGA
324 CG-CCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCAGA
* * * * *
13467316 TCAGACTGAGGGTTACAGTAGTAGGATCGATAGCT-CGCA-GGGGGATCAGGTCGATCCTCGGCT
388 TCGGACTGAGGGTTACGGTAGTAGGATCGACAG-TACGCAGGGGGGATCA-GACGATCC-CCGCT
** * * * *
13467379 TACGCATTCAGCCTCTACGACCGGTTGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAAGCAT
450 TGTGCATTCTGCCTCTCCGACC-GCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAAGCAT
* *
13467444 ACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTATAAGATCGGATCGGACCGAA
514 ACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCAGATCGGACCGAA
* * *** * * *
13467509 GGTTGTGGTAGCAGGACTAGTAGCAGGTTTGGCAGCACGTAGGGGCATCGGGCTAATCCCCAACT
579 GGTTGTGGCAGCAGGA-TCGTAGCAGACAT-GCAG--CG--GGGG-ACCGGTC-GAT-CCCAACT
* * ** * *
13467574 TAG-GCATTCTGCCTCTCCGACTGACTGATCACCCGCACTTTTGTTTCATGGGTTGGCTTAGGCA
635 T-GTGCATTCTGCCTCTCCGGCTGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
* * *
13467638 TACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTGAGGGTTGTGGCAGCAGGATCGGTAGCG
699 TACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC-GAGGGTTGTGGCAGCAGGACCGGTA-AG
* * * * * * * **
13467703 GGATCAACAACACGTAGAGGGGGACCGAGCTGATCCCTGACTTGTGCACTATACCTCTCCGACTG
762 GGATCGACAGCAAGTAGAGGGGGATCGAGCTGATCCCCGGCTTGTGCATTATACCTCTTTGAC-G
** *
13467768 ACCTCTCTGGTCGGCTGAGCACCCGTACGCTCGTTTCA
826 ACCTCTCTGGTCGGCTGAGTGCCCGTACGATCGTTTCA
* *
13467806 TGGGTTGACTTAGGCATA-TGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
13467870 GATC-GAACCAGATCGAGGGTTGCGGTAGCAGGATCAACAGCACGTAGGGGGGATCGGGCCGATC
66 GATCAG-ACCAGATCGAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGATCGAGCTGATC
* * * * * * *
13467934 ACC-GGCTTGTGCATTATGCCTCTCTGGCCGACTAAACGCCCACACGCCCGTTTCGTGGG-TGAC
130 -CCTGGCTTGTGCATTCTGCCTCTCCGACTGACTAAGCACCCACACGCCCGTTTCGTGGGTTGGC
* * * * ***
13467997 TTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCTAACCGGACCGAGGGTTGCGGTAGTAGGATC
194 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAACGGGA-C
* * * * * * * *
13468062 GGTAGCATGCAGAGGGGGACCGGGCTGAT-CCTCGGCTTGCACTTTCTGCCTCTCCCACCGGC
258 TGCAGCATGCAGAGGGGGATCGGGCCGATCCCT-GGCTTGCGCATTATGCCTCTCCGACCGGC
13468124 CTCTCCGACC
Statistics
Matches: 1727, Mismatches: 286, Indels: 107
0.81 0.13 0.05
Matches are distributed among these distances:
867 71 0.04
868 441 0.26
869 211 0.12
870 6 0.00
871 4 0.00
872 7 0.00
875 2 0.00
876 3 0.00
877 113 0.07
878 236 0.14
879 301 0.17
880 323 0.19
881 9 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (863 bp):
TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCAGACCAGATCGAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGATCGAGCTGATCC
CTGGCTTGTGCATTCTGCCTCTCCGACTGACTAAGCACCCACACGCCCGTTTCGTGGGTTGGCTT
AGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAACGGGACTGC
AGCATGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCG
CCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCAGATCG
GACTGAGGGTTACGGTAGTAGGATCGACAGTACGCAGGGGGGATCAGACGATCCCCGCTTGTGCA
TTCTGCCTCTCCGACCGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAAGCATACGGAGT
TCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCAGATCGGACCGAAGGTTGTG
GCAGCAGGATCGTAGCAGACATGCAGCGGGGGACCGGTCGATCCCAACTTGTGCATTCTGCCTCT
CCGGCTGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
GTCTAAGCCCCAGCCGGACGAGGGTTGTGGCAGCAGGACCGGTAAGGGATCGACAGCAAGTAGAG
GGGGATCGAGCTGATCCCCGGCTTGTGCATTATACCTCTTTGACGACCTCTCTGGTCGGCTGAGT
GCCCGTACGATCGTTTCA
Found at i:13467492 original size:26 final size:26
Alignment explanation
Indices: 13467437--13467492 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
13467427 TGGGTTGGCT
*
13467437 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCATGTA
*
13467463 TAAGCATATGGAGTTCATTCCCA-GTA
1 TAAGCATACGGAGTTCATT-CCATGTA
13467489 TAAG
1 TAAG
13467493 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCATGTA
Found at i:13468047 original size:366 final size:355
Alignment explanation
Indices: 13467616--13468277 Score: 821
Period size: 355 Copynumber: 1.8 Consensus size: 355
13467606 CCGCACTTTT
* * *
13467616 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTGAGGGT
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGT
* *
13467681 TGTGGCAGCAGGATCGGTAGCGGGATCAACAACACGTAGAGGGGGACCGAGCTGATCC-CTGACT
66 TGCGGCAGCAGGATCGGTAGC---AT---------GCAGAGGGGGACCGAGCTGATCCTC-GAC-
* * * ** *
13467745 TGTGCAC-TATACCTCTCCGACTGACCTCTCTGGTCGGCTGAGCACCCGTACGCTCGTTTCATGG
117 T-TGCACTTATACCTCTCCCACCGACCTCTCCGACCGACTGAGCACCCGTACGCTCGTTTCATGG
* *
13467809 GTTGACTTAGGCATAT-GAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
181 GTTGACTTAGGCATATAAAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGAT
* * *
13467873 C-GAACCAGATCGAGGGTTGCGGTAGCAGGATCAACAGCACGTAGGGGGGATCGGGCCGATCACC
246 CAG-ACCAGACCGAGGGTTGCGGCAGCAGGATCAACAGCACGCAGGGGGGATCGGGCCGATCACC
13467937 GGCTTGTGCATTATGCCTCTCTGGCCGACTAAACGCCCACACGCCC
310 GGCTTGTGCATTATGCCTCTCTGGCCGACTAAACGCCCACACGCCC
* * * * *
13467983 GTTTCGTGGG-TGACTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCTAACCGGACCGAGGGT
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGT
* * * * * *
13468047 TGCGGTAGTAGGATCGGTAGCATGCAGAGGGGGACCGGGCTGATCCTCGGCTTGCACTTTCTGCC
66 TGCGGCAGCAGGATCGGTAGCATGCAGAGGGGGACCGAGCTGATCCTCGACTTGCAC-TTATACC
* ** *
13468112 TCTCCCACCGGCCTCTCCGACCGACTGAGTGCCCGTATGCTCGTTTCATGGGTTGACTTAGGCAT
130 TCTCCCACCGACCTCTCCGACCGACTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCAT
* *
13468177 ATAAAGTTCATCCTCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAG
195 ATAAAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAG
* *
13468242 GGTTGTGGCAGCAGGATCAATAGCACGCAGGGGGGA
260 GGTTGCGGCAGCAGGATCAACAGCACGCAGGGGGGA
13468278 CTGGGCTGAT
Statistics
Matches: 255, Mismatches: 35, Indels: 22
0.82 0.11 0.07
Matches are distributed among these distances:
352 5 0.02
353 1 0.00
354 84 0.33
355 88 0.35
356 1 0.00
363 2 0.01
366 65 0.25
367 9 0.04
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (355 bp):
GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGT
TGCGGCAGCAGGATCGGTAGCATGCAGAGGGGGACCGAGCTGATCCTCGACTTGCACTTATACCT
CTCCCACCGACCTCTCCGACCGACTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATA
TAAAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGG
GTTGCGGCAGCAGGATCAACAGCACGCAGGGGGGATCGGGCCGATCACCGGCTTGTGCATTATGC
CTCTCTGGCCGACTAAACGCCCACACGCCC
Found at i:13468703 original size:26 final size:26
Alignment explanation
Indices: 13468673--13468725 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13468663 GTTGCCTTAG
13468673 GCATACAGAGTTCATACCATGTCTAA
1 GCATACAGAGTTCATACCATGTCTAA
* *
13468699 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATACCATGTCTAA
13468725 G
1 G
13468726 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATACCATGTCTAA
Found at i:13468898 original size:26 final size:26
Alignment explanation
Indices: 13468869--13468921 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13468859 GTTGGCTTAG
13468869 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTGCCA-GTCTAA
*
13468895 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
13468921 G
1 G
13468922 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:13468907 original size:196 final size:196
Alignment explanation
Indices: 13468616--13469092 Score: 527
Period size: 196 Copynumber: 2.4 Consensus size: 196
13468606 CCAGCTTGCA
* * * * * * *
13468616 CATTCTACCTCTCTGACCGGCTGAGCACCC-CTACG-CTCGTTTCATGGGTTGCCTTAGGCATAC
1 CATTCTGCCTCTCCGACCGACTGAGCGCCCAC-ACGTC-CGTTCCATCGGTTGGCTTAGGCATAC
* * *
13468679 AGAGTTCATACCATGTCTAAGCATACGGAGTTCATT-CCATGTCTAAGATTGGATCGGACCGAGG
64 GGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTGCCA-GTCTAAGATTGGACCGGACCGAGG
* * * * * *
13468743 GTTAC-G-ATAGTAGGACT-AGTAGCAGGATTGGCAGCACATAAGAGGGATCGAATCGATCCCCG
128 GTTACAGCA-A-CAGGA-TGAGCAGCAGGATCGACAGCACACAAGAGGGACCGAATCGATCCCCG
13468805 GCTTACG
190 GCTTACG
* * ** * * * *
13468812 CATTCTGCCTCTCTGATCGGTTGAGCGCTCGCACG-CTCGTTCCGTCTGTTGGCTTAGGCATACG
1 CATTCTGCCTCTCCGACCGACTGAGCGCCCACACGTC-CGTTCCATCGGTTGGCTTAGGCATACG
*
13468876 GAGTTCATTCCATGTCTAAGCATATGGAGTTCATTGCCAGTCTAAGATTGGACCGGACCGAGGGT
65 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTGCCAGTCTAAGATTGGACCGGACCGAGGGT
* * * * ** *
13468941 TGCAGCAACAGGATGAGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCTGCTTA
130 TACAGCAACAGGATGAGCAGCAGGATCGACAGCACACAAGAGGGACCGAATCGATCCCCGGCTTA
13469006 CG
195 CG
* *
13469008 CATTCTGCCTCTCCGACCGACTGAGCGCCCACACGTCCGTTCCATGGGTTGGCTTAGGCATAGGG
1 CATTCTGCCTCTCCGACCGACTGAGCGCCCACACGTCCGTTCCATCGGTTGGCTTAGGCATACGG
*
13469073 TGTTCATTCCATGTCTAAGC
66 AGTTCATTCCATGTCTAAGC
13469093 CCCAGCCGGA
Statistics
Matches: 237, Mismatches: 38, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
195 1 0.00
196 228 0.96
197 7 0.03
198 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (196 bp):
CATTCTGCCTCTCCGACCGACTGAGCGCCCACACGTCCGTTCCATCGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCATACGGAGTTCATTGCCAGTCTAAGATTGGACCGGACCGAGGGTT
ACAGCAACAGGATGAGCAGCAGGATCGACAGCACACAAGAGGGACCGAATCGATCCCCGGCTTAC
G
Found at i:13469372 original size:158 final size:157
Alignment explanation
Indices: 13468971--13469399 Score: 450
Period size: 159 Copynumber: 2.7 Consensus size: 157
13468961 CAGGATCGAC
* * * * *
13468971 AGCACGCAGGGGGGACCGGGTCGATCCCCTGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGC
1 AGCACGCAGGGGGGACC-GGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGC
* * * * *
13469036 CCACACG-TCCGTTCCATGGGTTGGCTTAGGCATAGGGTGTTCATTCCATGTCTAAGCCCCAGCC
65 CCGCACGCT-CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCC
* * ** *
13469100 GGATCGAGGGTTGTGGCAGCGGGACTGGT
129 AGATCAAGGGTTGTGAAAGCAGGACTGGT
* * * * * *
13469129 AGCACGCAGAGGGGGACCGAGCTGATCCCCAGCTTGCACATTATGCTTCTTCGATCGGCTCAGCG
1 AGCACGCAG-GGGGGACCG-GCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCG
* * * * * * *
13469194 CCCGCACACGCGTTTCATGGGTTGACTTATGCATACAGAGTTCATT-CGTAGTCTAAG-ATCAGA
64 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAG-
*
13469257 CCAGATCAAGGGTTGTGAAAGCAGGATTGGT
127 CCAGATCAAGGGTTGTGAAAGCAGGACTGGT
* * * * * * *
13469288 AGCATGTAGGGGGGACCGGCCCGATCCCCGGCTTGCGCATTCTACCTCTTCGGCCGGTTGAGCAC
1 AGCACGCAGGGGGGACCGG-CCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGC
13469353 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
65 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
13469400 CAGTGTAAAA
Statistics
Matches: 217, Mismatches: 47, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 98 0.45
159 118 0.54
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
AGCACGCAGGGGGGACCGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAG
ATCAAGGGTTGTGAAAGCAGGACTGGT
Found at i:13470563 original size:26 final size:26
Alignment explanation
Indices: 13470511--13470563 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13470501 CCCGGCTTGG
* *
13470511 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTATAA
13470537 GCATACAGAGTTCATTCCCA-GTATAA
1 GCATACAGAGTTCATT-CCATGTATAA
13470563 G
1 G
13470564 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTATAA
Found at i:13471018 original size:26 final size:26
Alignment explanation
Indices: 13470982--13471032 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13470972 GTTGACTTAG
*
13470982 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*
13471008 GCATACAAAGTTCATTCCCAGTCTA
1 GCATACAAAGTTCATCCCCAGTCTA
13471033 GGATCGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:13471298 original size:159 final size:157
Alignment explanation
Indices: 13471049--13471510 Score: 502
Period size: 159 Copynumber: 2.9 Consensus size: 157
13471039 AATAGGACTG
* * * * * * *
13471049 AGGGTTGCGACAGCAGGATCGGTAGCACGCAGTGGGGATCGGGTCGATTCCCGACTTACGCATTC
1 AGGGTTGCGGCAGCAGGATCGGCAGCACGTAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTA
* * *
13471114 TGCCTCTCCGGTCGGCTGAGCGCCCGCACGC-CTGTTTCATGGGTTGGCATAGGCATAGGGAGTT
66 TGCCTCTCCGGTC-GCTGAGCGCCCGAACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAGTT
*
13471178 CATTCCATGTCTAAGCCCTAG-CC-GAACTA
129 CATTCCATGTCTAAGCCC-AGACCAG-ACCA
* * *
13471207 AGGGTTGTGGTAGCGGGATCGGCAGCACGTAGAGGGGGATCGGGTCGATCCCCGACTTGCGCATT
1 AGGGTTGCGGCAGCAGGATCGGCAGCACGTAG-GGGGGATCGGGTCGATCCCCGACTTGCGCATT
* * * * * * * *
13471272 ATGCCTCTCTGGCCAGCTCAGTGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATATGGAATT
65 ATGCCTCTCCGGTC-GCTGAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
* ** *
13471337 AATTCCCA-GTCTAAGATCAGATCAGACCA
129 CATT-CCATGTCTAAGCCCAGACCAGACCA
* * * * *
13471366 AGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGGACCGGATCGATCCTCGACTTGTGCATTA
1 AGGGTTGCGGCAGCAGGATCGGCAGCACGTAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTA
* * *
13471431 TGCCTCTCCGGTCGACTGAGC-CCCCATACGCTCGTTTCATAGGTTGGCTTAGGCATACGAAGTT
66 TGCCTCTCCGGTCG-CTGAGCGCCCGA-ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
13471495 CATTCCATGTCTAAGC
129 CATTCCATGTCTAAGC
13471511 ATACGGAGTT
Statistics
Matches: 249, Mismatches: 47, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
157 8 0.03
158 113 0.45
159 123 0.49
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
AGGGTTGCGGCAGCAGGATCGGCAGCACGTAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTA
TGCCTCTCCGGTCGCTGAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
TTCCATGTCTAAGCCCAGACCAGACCA
Found at i:13471514 original size:26 final size:26
Alignment explanation
Indices: 13471483--13471534 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13471473 GTTGGCTTAG
13471483 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
13471509 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13471535 TATCAAACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13471722 original size:26 final size:26
Alignment explanation
Indices: 13471692--13471769 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
13471682 GTTGACTTAG
13471692 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13471718 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13471744 GCATACGGAGTTCATTCCCA-TCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13471769 G
1 G
13471770 ATCAAACCAG
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
25 6 0.12
26 43 0.88
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13472090 original size:26 final size:26
Alignment explanation
Indices: 13472060--13472112 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13472050 GTTGGCTTAG
**
13472060 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13472086 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13472112 G
1 G
13472113 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13472822 original size:26 final size:26
Alignment explanation
Indices: 13472793--13472845 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13472783 GTTGACTTAG
13472793 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13472819 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13472845 G
1 G
13472846 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13473180 original size:159 final size:158
Alignment explanation
Indices: 13472819--13473226 Score: 419
Period size: 159 Copynumber: 2.6 Consensus size: 158
13472809 CCCAGTCTAA
* *
13472819 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGACCGACA
* * * * *
13472884 GCACGTAGGGGGGATCGAGCCGATCCTCGACTAGCGCATTCTGCCTCTCCGACCTGCTGAGTGCC
66 GCACGTAGAGGGGATCGAGCCGATCCCCGACTAGCGCATTATGCCTCTCCGACCGGCTCAGTGCC
* ** *
13472949 TGCATGCCCATTTCGTGGGTTGGCTTAG
131 CGCACACCCATTTCGTGGGTTGACTTAG
* * ** * * *
13472977 GTATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGC-GAGACCT
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACTGAGGGTTGCGGCAGCAG-GACCG
* * * * * * *
13473039 ATAGCACGTAGAAGGGGATCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCGTCCGGCTCAG
63 ACAGCACGTAG-AGGGGATCGAGCCGATCCCCGACTAGCGCATTATGCCTCTCCGACCGGCTCAG
**
13473104 TGCCCGCACACTTATTTCGTGGGTTGACTTAG
127 TGCCCGCACACCCATTTCGTGGGTTGACTTAG
* * * * * * *
13473136 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGACCGACA
* *
13473201 GCACATAG-GTGGGATCGAGTCGATCC
66 GCACGTAGAG-GGGATCGAGCCGATCC
13473227 TCGGCTTACG
Statistics
Matches: 200, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
157 5 0.03
158 71 0.35
159 120 0.60
160 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGACCGACA
GCACGTAGAGGGGATCGAGCCGATCCCCGACTAGCGCATTATGCCTCTCCGACCGGCTCAGTGCC
CGCACACCCATTTCGTGGGTTGACTTAG
Found at i:13473344 original size:26 final size:26
Alignment explanation
Indices: 13473294--13473346 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13473284 GTTGGCTTAC
*
13473294 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
13473320 GCATACGAAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
13473346 G
1 G
13473347 ATCAAATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:13474155 original size:158 final size:158
Alignment explanation
Indices: 13473773--13474191 Score: 459
Period size: 159 Copynumber: 2.6 Consensus size: 158
13473763 GGGACCAAGC
*
13473773 CGATCCTCGAC-TAGCGCATTCTGCCTCTCCGGCCTGCTGAGTGCCCGCACGCCCATTTCGTGGG
1 CGATCCTCGACTTA-CGCATTCTGCCTCTCCGG-CTGCTGAGTGCCCGCACGCTCATTTCGTGGG
* ** * * ** *
13473837 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACTGAGGGTTGTGGCAGCG
64 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTACGGCAGCA
*** *
13473902 GGACCTGTAGCACGTAGAGGGGGATCGGGT
129 GGACCAACAGCACGCAGAGGGGGATCGGGT
* * * * * * * * * *
13473932 CGATCCCCGACTTGCACATTATGCCTCTCCGTTCGGCTCAGTGCCCGTACGCTCGTTTTGTGGGT
1 CGATCCTCGACTTACGCATTCTGCCTCTCCG-GCTGCTGAGTGCCCGCACGCTCATTTCGTGGGT
* ** * *
13473997 TGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACCGAACCGAGGGTTACGGTAGC
65 TGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGAACCGAGGGTTACGGCAGC
* *
13474060 AGGATCAACAGCACGCAG-GGGGGATGGGGT
128 AGGACCAACAGCACGCAGAGGGGGATCGGGT
** *
13474090 CGATCCTCGACTTACGCATTCTGCCTCTCCGGCTGACTGAACGCCCGCACGCTCATTTCATGGGT
1 CGATCCTCGACTTACGCATTCTGCCTCTCCGGCTG-CTGAGTGCCCGCACGCTCATTTCGTGGGT
13474155 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
13474192 TACGGAGTTC
Statistics
Matches: 208, Mismatches: 45, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
157 5 0.02
158 92 0.44
159 107 0.51
160 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.25
Consensus pattern (158 bp):
CGATCCTCGACTTACGCATTCTGCCTCTCCGGCTGCTGAGTGCCCGCACGCTCATTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTACGGCAGCAGG
ACCAACAGCACGCAGAGGGGGATCGGGT
Found at i:13475427 original size:26 final size:26
Alignment explanation
Indices: 13475398--13475450 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13475388 GTTGACTTAG
*
13475398 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
* *
13475424 GCATATGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
13475450 G
1 G
13475451 ATCGAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAGTCTAA
Found at i:13475559 original size:184 final size:185
Alignment explanation
Indices: 13475249--13475596 Score: 449
Period size: 184 Copynumber: 1.9 Consensus size: 185
13475239 GCATACAGAG
* *
13475249 TTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGACGGTAGGATCGACAGCACACAGGG
1 TTCATTCCCAGTCTAAGATCGAACTAGACCAAGGGTTACGACGGTAGGATCGACAGCACACAGGG
* * * * *
13475314 GGGGACTGGATCGATCCCCGGCTTGTGCATTCTACCTCTCTGATCGGCTGAGCGCCCGTACGCTC
66 GGGGACGGGATCGATCCCCGACTTGCGCATTCTACCTCTCTGATCGGCTGAACGCCCGTACGCCC
*
13475379 GTTTCGTGGGTT-GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAC
131 GTTTCGTGGGTTCG-CTTAGGCATACGGACTTCATCCCCAGTCTAAGCATATGGAC
* * * *
13475434 TTCATTCCCAGTCTAAGATCGAACTAGACCGAGGG-T-C-ACGGTAACAGGATTGGCAGCACATA
1 TTCATTCCCAGTCTAAGATCGAACTAGACCAAGGGTTACGACGGT---AGGATCGACAGCACACA
* * *
13475496 -GGGGGGACCGGGA-CGATCCCCGACTTGCGTATTCTGCCTCTCTGA-CTTGCTGAACGCCCGTA
63 GGGGGGGA-CGGGATCGATCCCCGACTTGCGCATTCTACCTCTCTGATC-GGCTGAACGCCCGTA
*
13475558 CGCCCGTTTCGTGGGTTCGCTTAGGCATAGGGACTTCAT
126 CGCCCGTTTCGTGGGTTCGCTTAGGCATACGGACTTCAT
13475597 TCCATGTTTA
Statistics
Matches: 141, Mismatches: 16, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
182 5 0.04
183 2 0.01
184 83 0.59
185 51 0.36
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (185 bp):
TTCATTCCCAGTCTAAGATCGAACTAGACCAAGGGTTACGACGGTAGGATCGACAGCACACAGGG
GGGGACGGGATCGATCCCCGACTTGCGCATTCTACCTCTCTGATCGGCTGAACGCCCGTACGCCC
GTTTCGTGGGTTCGCTTAGGCATACGGACTTCATCCCCAGTCTAAGCATATGGAC
Found at i:13476008 original size:316 final size:317
Alignment explanation
Indices: 13475435--13476242 Score: 976
Period size: 316 Copynumber: 2.6 Consensus size: 317
13475425 CATATGGACT
* * * * * * * ** **
13475435 TCATTCCCAGTCTAAGATCGAA-CTAGACCGAGGGTCACGGTAACAGGATTGGCAGCACATAGGG
1 TCATTCCAAGTCTAAGATCGAATC-CGACTGAGGGTTACAGTAGCAGGATCGATAGCACGCAGGG
* * * * * * *
13475499 GGGACCGGGA-CGATCCCCGACTTGCGTATTCTGCCTCT-CTGACTTGCTGAACGCCCGTACGCC
65 GGGACC-GGATCGATCCCCGACTTGCATATTCTGCCTCTCCCGTC-AGCTGAGCGCCCGCACGCT
* * * * *
13475562 CGTTTCGTGGGTTCGCTTAGGCATAGGGACTTCATTCCATGTTTAAGCCCCAGCTGGACCGAGGG
128 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAGGG
* * * **
13475627 TTGTGGCAGCGGGATCGGCAGCACGCAGAAGGCGACTGGGCCGATCCCTGGCTTGCGCATTATGC
193 GTGTGGCAGCAGGATCGACAGCACGCAGAAGGCGACTGGGCCGATCCCCAGCTTGCGCATTATGC
* ** * * *
13475692 CTCTCCGGTCGGCTCAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATAC-GAGC
258 CTCACCGACCGGCTCAGCACCCGCACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGC
** *
13475751 TCATTCCAAGTCTAAGATCGAATCCGACTGAGGGTTATGGTAGTAGGATCGATAGCACGCAGGGG
1 TCATTCCAAGTCTAAGATCGAATCCGACTGAGGGTTACAGTAGCAGGATCGATAGCACGCAGGGG
* * *
13475816 GGACCGGATCGATCCCCGCCTTGCATATTCTGCCTCTCCCGTCGGCTGAGCGCCCGCACACTCGT
66 GGACCGGATCGATCCCCGACTTGCATATTCTGCCTCTCCCGTCAGCTGAGCGCCCGCACGCTCGT
* * *
13475881 TTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCTAGATCGAGGGGTG
131 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAGGGGTG
* * * *
13475946 TGGCAGCAGGATCGATAGCACGCAGAGGGGGACTGGGTCGATCCCCAGCTTGCGCATTATGCCTC
196 TGGCAGCAGGATCGACAGCACGCAGAAGGCGACTGGGCCGATCCCCAGCTTGCGCATTATGCCTC
* *
13476011 ACCGACCGGCTCAGCACCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGT
261 ACCGACCGGCTCAGCACCCGCACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGC
* * * * * * *
13476068 TCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGCAGTAGCAGGATTGATAGCACGCAGGGT
1 TCATTCCAAGTCTAAGATCGAATCCGACTGAGGGTTACAGTAGCAGGATCGATAGCACGCAGGGG
* * * * * * *
13476133 GGATCGGGTCGATCCCTGGCTTGCACATTCTGCCTTTCCCGTCAGCTGAGCGCCCGCACGCTCAT
66 GGACCGGATCGATCCCCGACTTGCATATTCTGCCTCTCCCGTCAGCTGAGCGCCCGCACGCTCGT
* *
13476198 TTCGGGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
131 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13476243 ATACGGAGTT
Statistics
Matches: 419, Mismatches: 69, Indels: 7
0.85 0.14 0.01
Matches are distributed among these distances:
315 3 0.01
316 257 0.61
317 159 0.38
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (317 bp):
TCATTCCAAGTCTAAGATCGAATCCGACTGAGGGTTACAGTAGCAGGATCGATAGCACGCAGGGG
GGACCGGATCGATCCCCGACTTGCATATTCTGCCTCTCCCGTCAGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAGGGGTG
TGGCAGCAGGATCGACAGCACGCAGAAGGCGACTGGGCCGATCCCCAGCTTGCGCATTATGCCTC
ACCGACCGGCTCAGCACCCGCACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGC
Found at i:13476251 original size:26 final size:26
Alignment explanation
Indices: 13476215--13476267 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13476205 GTTGCCTTAG
13476215 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13476241 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13476267 G
1 G
13476268 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13476369 original size:184 final size:183
Alignment explanation
Indices: 13476057--13478145 Score: 1295
Period size: 184 Copynumber: 11.0 Consensus size: 183
13476047 GTTGACTTAG
** * * * * * *
13476057 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGCAGTAGCAGGATTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * *** * ** * *
13476122 GCACGCAGGGTGGATCGGGTCGATCCCTGGCTTGCACATTCTGCCTTTCCCGTCAGCTGAGCGCC
66 GCACGCAGGG-GGATCGGGCCGATCCCCGACTTATGCATTCTGCCTCTCTGGCCGGCTGAGCGCC
* ** *
13476187 CGCACGCTCATTTCGGGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * **
13476241 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
13476306 GCACGTAGGGTAGACCGGACCGATCCTCGACTTATGCATTCTGCCTCTCTGGCCGGTTGAGCGCC
66 GCACGCAGGG-GGATCGGGCCGATCCCCGACTTATGCATTCTGCCTCTCTGGCCGGCTGAGCGCC
* * * * *
13476371 CGTACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
130 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
13476425 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCAGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGG---A-T-
* * * *
13476490 GCAGGATCGAAGCACGCAAGGGGGGATTGGGCCGATCCCTGGCTTGCGTATTCTGCCTCTCCGAT
61 -C--GA-C--AGCACGC-A-GGGGGATCGGGCCGATCCCCGAC-T---TA---TGCAT-T-C--T
* * * * *
13476555 CAGCCTCTCTGGTCGACTGAGCACCTGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
107 --GCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
*
13476620 CATCCCCA-GTCTAA
170 CAT-TCCATGTCTAA
13476634 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * ** * * *
13476699 GCACGCAGGGAGGATCGGGTCGATCCTCAACTTGCGCATTCTGCCTCTCCGGCTGACTGAGCGCC
66 GCACGCAGGG-GGATCGGGCCGATCCCCGACTTATGCATTCTGCCTCTCTGGCCGGCTGAGCGCC
* * * *
13476764 CGCACGCTCATTTCATGGGTTGGCTTAGCCATACGGAGTTCATTCCATATCTAA
130 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * * *
13476818 GCCTACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCAAAGGTTGTGGTAGCATGACAAGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC-GAGG--GT--T-GC--G----GCA
* * *
13476883 GCAAGATCGACAGCACGTAGAGGGGA-CTGGGTCGATCCCCGACTT-TCGCATTCTACCTTTTCG
54 GCAGGATCGACAGCACGCAG-GGGGATC-GGGCCGATCCCCGACTTAT-GCA-T-T--C---T-G
* * * *
13476946 ACCGGCCTCTTCGGCCGGCTGAGCGCTCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAG
108 -CC--TCTC-T-GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
* *
13477011 TTCATCCCCA-ATCTAA
168 TTCAT-TCCATGTCTAA
* * * *
13477027 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTGTGG-ATCCCCGGATGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCA--GCAGGATCG
* * * * **
13477090 ATAGCACGCAGGGGGGATCGAGTCGATCCCCGGCTTATGCATTCTGCCTCT-TCGATCGGCTGAG
63 ACAGCACGCA-GGGGGATCGGGCCGATCCCCGACTTATGCATTCTGCCTCTCT-GGCCGGCTGAG
* * *
13477154 CGCCCGTATGCTCGTTTCGTGGGTTCG-CTTAGGCATACGGAGTTCATTCCATGTCTAA
126 CGCCCGCACGCTCGTTTCATGGGTT-GACTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
13477212 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGCGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
13477277 GCACGCATGGGTGATCGGGCTGATCCCTGACTTATGCATTTTGCCTCTTCGATCGGCCTCTCCGG
66 GCACGCA-GGGGGATCGGGCCGATCCCCGACTTATGCATTCTGCCTC-TC--T-GG------C--
* * * ** *
13477342 TCGGCTGAGCTCCCGCACGTTCGATTCATGGGTTGACTTAGGCATACAAAGTTCA-TCCTTAGTC
118 -CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTC
13477406 TAA
181 TAA
* * * * * * **
13477409 GCATACAGACTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCAAGATCCCCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * **
13477474 GCAGGCAGGGGGCATCGGGCCGGTCCCCGACTTACGCATTCTGCCTCTCCGACTGACTGAATGCC
66 GCACGCAGGGGG-ATCGGGCCGATCCCCGACTTATGCATTCTGCCTCTCTGGCCGGCTGAGCGCC
* *
13477539 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
130 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
** * ** *
13477593 GCATACAAAGTTCATTCCCAGCCTAAGATCAGACTAGACTGAGGGTTGTGGCAGCAGGAGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG-T-T----GC--G-GCAGC-
* * * * ** * **
13477658 GTAGGATTGGCAGCACGCAGAGGGGACCGGGCCGATCCCCGGCTTGCGTATTCTGCCTCTCCAGC
56 --AGGATCGACAGCACGCAG-GGGGATCGGGCCGATCCCCGACTTATGCATTCTGCCTCTCTGGC
* * * *
13477723 CGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCCTACGGAGTTTATTCCATGTCTA
118 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTA
13477788 A
183 A
* * * * * * * * * ** * **
13477789 GC---C-----CCAAT--CGGACTGAGGGT-TG--TGG-CAGTAGGACT--GACAGTGGGATCGA
1 GCATACGGAGTTCATTCCCAGTCT-AAGATCAGACCGGACCG-AGGGTTGCGGCAGCAGGATCGA
* ** * * *
13477838 CAGCACACCGAGGGGGATCGGGCTAATCCCC-AGCTTGTGCATTATGCCTCTCTGGCCGGTTGAG
64 CAGCAC-GC-AGGGGGATCGGGCCGATCCCCGA-CTTATGCATTCTGCCTCTCTGGCCGGCTGAG
** * ** *
13477902 CATCCACACGCTCGTTTTTTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
126 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAA
* * *
13477960 GCATATGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTGCGACACCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* ** * * * ** * * *
13478024 AGCATGCAAGAAGGA-CCGGCCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCTGG-TTATGC
65 AGCACGC-AGGGGGATCGGGCC-GATCCCCGACTTATGCATTCTGCCTCTCTGGCCGGCTGA-GC
* * * * ** * * *
13478087 GCCCGTACACCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAA
127 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
13478144 GC
1 GC
13478146 CCTAGCCAAA
Statistics
Matches: 1499, Mismatches: 281, Indels: 250
0.74 0.14 0.12
Matches are distributed among these distances:
170 11 0.01
171 88 0.06
172 5 0.00
173 3 0.00
174 1 0.00
179 3 0.00
180 4 0.00
181 4 0.00
182 1 0.00
183 20 0.01
184 529 0.35
185 127 0.08
186 10 0.01
187 9 0.01
188 8 0.01
189 4 0.00
190 8 0.01
191 1 0.00
192 3 0.00
193 8 0.01
194 1 0.00
195 7 0.00
196 180 0.12
197 169 0.11
198 44 0.03
199 3 0.00
200 4 0.00
201 3 0.00
203 7 0.00
204 3 0.00
205 4 0.00
206 3 0.00
207 4 0.00
208 4 0.00
209 210 0.14
210 6 0.00
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGATCGGGCCGATCCCCGACTTATGCATTCTGCCTCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:13476436 original size:26 final size:26
Alignment explanation
Indices: 13476399--13476451 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13476389 GTTGGCTTAG
13476399 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
*
13476425 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
13476451 G
1 G
13476452 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:13476638 original size:26 final size:26
Alignment explanation
Indices: 13476608--13476660 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13476598 GTTGACTTAG
13476608 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13476634 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13476660 G
1 G
13476661 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13476829 original size:26 final size:27
Alignment explanation
Indices: 13476790--13476844 Score: 87
Period size: 26 Copynumber: 2.1 Consensus size: 27
13476780 GGGTTGGCTT
13476790 AGCCATACGGAGTTCATTCCATA-TCTA
1 AGCCATACGGAGTTCATTCC-TAGTCTA
13476817 AGCC-TACGGAGTTCATTCCTAGTCTA
1 AGCCATACGGAGTTCATTCCTAGTCTA
13476843 AG
1 AG
13476845 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
25 2 0.07
26 21 0.78
27 4 0.15
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (27 bp):
AGCCATACGGAGTTCATTCCTAGTCTA
Found at i:13476994 original size:393 final size:388
Alignment explanation
Indices: 13476177--13477622 Score: 1589
Period size: 393 Copynumber: 3.7 Consensus size: 388
13476167 TTTCCCGTCA
* ** * *
13476177 GCTGAGCGCCCGCACGCTCATTTCGGGGGTTGCCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
1 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
* * * **
13476241 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGTAGGATCGGTA
65 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * **
13476306 GCACGTAGGGTA-GACCGGACCGATCCTCGACTTATGCATTCTGCCTCTCTGGCCGGTTGAGCGC
130 GCACGCAGGG-AGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGCTGACTGAGCGC
* * * * *
13476370 CCGTACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAG
194 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAG
* * * * * * * *
13476435 TTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCAGTAGCAGGATCGA
259 TTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGTGGTAGCA-GA-CAGTAGCAAGATCGA
* * * * *
13476500 -AGCACGCAAGGGGGGATTGGGCCGATCCCTGGCTTGCGTATTCTGCCTCTCCGATCAGCCTC-T
322 CAGCACG-AA-GGGGGA-TGGG-CGATCCCTGACTTTCGCATTCTGCCTCTTCGATCGGCCTCTT
13476563 CTGGTCG
383 C-GGTCG
* * * *
13476570 ACTGAGCACCTGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
13476635 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
* * * *
13476700 CACGCAGGGAGGATCGGGTCGATCCTCAACTTGCGCATTCTGCCTCTCCGGCTGACTGAGCGCCC
131 CACGCAGGGAGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGCTGACTGAGCGCCC
* * * * *
13476765 GCACGCTCATTTCATGGGTTGGCTTAGCCATACGGAGTTCATTCCATATCTAAGCCTACGGAGTT
196 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTT
* *
13476830 CATTCCTAGTCTAAGATCGGATCGGACCAAAGGTTGTGGTAGCATGACAAGTAGCAAGATCGACA
261 CATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGTGGTAGCA-GAC-AGTAGCAAGATCGACA
* * * * *
13476895 GCACGTAGAGGGGACTGGGTCGATCCCCGACTTTCGCATTCTACCTTTTCGACCGGCCTCTTCGG
324 GCACGAAG-GGGGA-TGGG-CGATCCCTGACTTTCGCATTCTGCCTCTTCGATCGGCCTCTTCGG
*
13476960 CCG
386 TCG
* * * *
13476963 GCTGAGCGCTCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* * * *
13477028 CATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTGTGG-ATCCCCGGATGGA
66 CATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCA--GCAGGATCGA
* * * * * * * * *
13477091 TAGCACGCAGGGGGGATCGAGTCGATCCCCGGCTTATGCATTCTGCCTCTTC-GATCGGCTGAGC
128 CAGCACGCAGGGAGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGCT-GACTGAGC
* * * *
13477155 GCCCGTATGCTCGTTTCGTGGGTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGA
192 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGA
*
13477220 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAA-G--GT--T-GC-G---GCAGCAAGATCGA
257 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGTGGTAGCAGACAGTAGCAAGATCGA
* * * *
13477275 CAGCACGCATGGGTGATCGGGCTGATCCCTGACTTAT-GCATTTTGCCTCTTCGATCGGCCTCTC
322 CAGCACG-AAGGGGGAT-GGGC-GATCCCTGACTT-TCGCATTCTGCCTCTTCGATCGGCCTCTT
13477339 CGGTCG
383 CGGTCG
* * * ** **
13477345 GCTGAGCTCCCGCACGTTCGATTCATGGGTTGACTTAGGCATACAAAGTTCATCCTTAGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* * * * * * **
13477410 CATACAGACTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCAAGATCCCCAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
* * * **
13477475 CAGGCAGGG-GGCATCGGGCCGGTCCCCGACTTACGCATTCTGCCTCTCCGACTGACTGAATGCC
131 CACGCAGGGAGG-ATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGCTGACTGAGCGCC
* *
13477539 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAAAGT
195 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGT
*
13477604 TCATTCCCAGCCTAAGATC
260 TCATTCCCAGTCTAAGATC
13477623 AGACTAGACT
Statistics
Matches: 895, Mismatches: 140, Indels: 48
0.83 0.13 0.04
Matches are distributed among these distances:
380 2 0.00
381 132 0.15
382 164 0.18
383 4 0.00
386 1 0.00
388 2 0.00
389 1 0.00
391 2 0.00
392 5 0.01
393 425 0.47
394 157 0.18
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.24
Consensus pattern (388 bp):
GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGGGAGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGCTGACTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTT
CATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGTGGTAGCAGACAGTAGCAAGATCGACAGC
ACGAAGGGGGATGGGCGATCCCTGACTTTCGCATTCTGCCTCTTCGATCGGCCTCTTCGGTCG
Found at i:13477037 original size:26 final size:26
Alignment explanation
Indices: 13477001--13477053 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13476991 GTTGACTTAG
13477001 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
13477027 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
13477053 G
1 G
13477054 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:13477223 original size:26 final size:26
Alignment explanation
Indices: 13477186--13477238 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13477176 GTTCGCTTAG
*
13477186 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
13477212 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13477238 G
1 G
13477239 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13477618 original size:26 final size:26
Alignment explanation
Indices: 13477567--13477619 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13477557 GTTGGCTTAG
* *
13477567 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAAAGTTCATTCCATGCCTAA
13477593 GCATACAAAGTTCATTCCCA-GCCTAA
1 GCATACAAAGTTCATT-CCATGCCTAA
13477619 G
1 G
13477620 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCATGCCTAA
Found at i:13477682 original size:775 final size:781
Alignment explanation
Indices: 13476177--13477698 Score: 1926
Period size: 775 Copynumber: 2.0 Consensus size: 781
13476167 TTTCCCGTCA
* * *
13476177 GCTGAGCGCCCGCACGCTCATTTCGGGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 GCTGAGCGCCCGCACGCTCATTTCGGGGGTTGACTTAGGCATACGGAGTTCATCCCATATCTAAG
13476242 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGTAGGATCGGTAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGTAGGATCGGTAG
* * * * *
13476307 CACGTAGGGTAGACCGGACCGATCCTCGACTTATGCATTCTGCCTCTCTGGCCGGTTGAGCGCCC
131 CACGCAGGGGAGACCGGACCGATCCCCGACTTATGCATTCTGCCTCTCTGACCGGCTGAGCGCCC
* *
13476372 GTACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTT
196 GTACACTCGTTTCGTGGGTTCGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTT
* *
13476437 CATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCAGTAGCAGGATCGAAG
261 CATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAGC--GA-CAGTAGCA-GATC-AAG
* * * * *
13476502 CACGCAAGGGGGGATTGGGCCGATCCCTGGCTTGCGTATTCTGCCTCTCCGATCAGCCTCTCTGG
321 CACGCAAGGGGGGATCGGGCCGATCCCTGACTTACGCATTCTGCCTCTCCGATCAGCCTCTCCGG
* * * **
13476567 TCGACTGAGCACCTGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
386 TCGACTGAGCACCCGCACGCTCGATTCATGGGTTGACTTAGGCATACAAAGTTCATCCCCAGTCT
* * * *
13476632 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA
451 AAGCATACAGACTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCCA
* * * * *
13476697 CAGCACGCAGGGAGGATCGGGTCGATCCTCAACTTGCGCATTCTGCCTCTCCGGCTGACTGAGCG
516 CAGCACGCAGGGAGGATCGGGCCGATCCCCAACTTACGCATTCTGCCTCTCCGACTGACTGAACG
* * **
13476762 CCCGCACGCTCATTTCATGGGTTGGCTTAGCCATACGGAGTTCATTCCATATCTAAGCCTACGGA
581 CCCGCACGCTCATTTCATGGGTTGGCTTAGCCATACAGAGTTCATTCCATATCTAAGCATACAAA
* * * * * * *
13476827 GTTCATTCCTAGTCTAAGATCGGATCGGACCAAAGGTTGTGGTAGCATGACAAGTAGCAAGATCG
646 GTTCATTCCCAGCCTAAGATCAGATCAGACCAAAGGTTGTGGCAGCAGGACAAGCAGCAAGATCG
* * *
13476892 ACAGCACGTAGAGGGGACTGGGTCGATCCCCGACTTTCGCATTCTACCTTTTCGACCGGCCTCTT
711 ACAGCACGCAGAGGGGACCGGGCCGATCCCCGACTTTCGCATTCTACCTTTTCGACCGGCCTCTT
13476957 CGGCCG
776 CGGCCG
* ** *
13476963 GCTGAGCGCTCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-ATCTAA
1 GCTGAGCGCCCGCACGCTCATTTCGGGGGTTGACTTAGGCATACGGAGTTCAT-CCCATATCTAA
* * * *
13477027 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTG-TGGA-TCCCCGGAT-
65 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCAGCAGT---AGGATC
* * * * *
13477088 GGATAGCACGCAGGGGGGATC-GAGTCGATCCCCGGCTTATGCATTCTGCCTCT-TCGATCGGCT
126 GG-TAGCACGCAGGGGAGACCGGA-CCGATCCCCGACTTATGCATTCTGCCTCTCT-GACCGGCT
** *
13477151 GAGCGCCCGTATGCTCGTTTCGTGGGTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
188 GAGCGCCCGTACACTCGTTTCGTGGGTTCGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCAT
* * * *
13477216 ACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGCGGCAGC-A-AG-ATC-GA-C
253 ACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCGACAGTAGCAGATC
* * * * * * *
13477276 -AGCACGC-ATGGGTGATCGGGCTGATCCCTGACTTATGCATTTTGCCTCTTCGATCGGCCTCTC
318 AAGCACGCAAGGGGGGATCGGGCCGATCCCTGACTTACGCATTCTGCCTCTCCGATCAGCCTCTC
* * * **
13477339 CGGTCGGCTGAGCTCCCGCACGTTCGATTCATGGGTTGACTTAGGCATACAAAGTTCATCCTTAG
383 CGGTCGACTGAGCACCCGCACGCTCGATTCATGGGTTGACTTAGGCATACAAAGTTCATCCCCAG
* * *
13477404 TCTAAGCATACAGACTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCAAGAT
448 TCTAAGCATACAGACTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGAT
* * * *
13477469 CCCCAGCAGGCAGGG-GGCATCGGGCCGGTCCCCGACTTACGCATTCTGCCTCTCCGACTGACTG
513 CCACAGCACGCAGGGAGG-ATCGGGCCGATCCCCAACTTACGCATTCTGCCTCTCCGACTGACTG
* * * *
13477533 AATGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATA
577 AACGCCCGCACGCTCATTTCATGGGTTGGCTTAGCCATACAGAGTTCATTCCATATCTAAGCATA
** * *
13477598 CAAAGTTCATTCCCAGCCTAAGATCAGA-CTAGACTGAGGGTTGTGGCAGCAGGAGC-AGCAGTA
642 CAAAGTTCATTCCCAGCCTAAGATCAGATC-AGACCAAAGGTTGTGGCAGCAGGA-CAAGCAGCA
* * *
13477661 GGATTGGCAGCACGCAGAGGGGACCGGGCCGATCCCCG
705 AGATCGACAGCACGCAGAGGGGACCGGGCCGATCCCCG
13477699 GCTTGCGTAT
Statistics
Matches: 630, Mismatches: 95, Indels: 33
0.83 0.13 0.04
Matches are distributed among these distances:
774 3 0.00
775 346 0.55
776 8 0.01
778 1 0.00
779 2 0.00
781 2 0.00
782 2 0.00
784 2 0.00
785 3 0.00
786 103 0.16
787 158 0.25
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (781 bp):
GCTGAGCGCCCGCACGCTCATTTCGGGGGTTGACTTAGGCATACGGAGTTCATCCCATATCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGTAGGATCGGTAG
CACGCAGGGGAGACCGGACCGATCCCCGACTTATGCATTCTGCCTCTCTGACCGGCTGAGCGCCC
GTACACTCGTTTCGTGGGTTCGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTT
CATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCGACAGTAGCAGATCAAGCACGC
AAGGGGGGATCGGGCCGATCCCTGACTTACGCATTCTGCCTCTCCGATCAGCCTCTCCGGTCGAC
TGAGCACCCGCACGCTCGATTCATGGGTTGACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCA
TACAGACTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCCACAGCA
CGCAGGGAGGATCGGGCCGATCCCCAACTTACGCATTCTGCCTCTCCGACTGACTGAACGCCCGC
ACGCTCATTTCATGGGTTGGCTTAGCCATACAGAGTTCATTCCATATCTAAGCATACAAAGTTCA
TTCCCAGCCTAAGATCAGATCAGACCAAAGGTTGTGGCAGCAGGACAAGCAGCAAGATCGACAGC
ACGCAGAGGGGACCGGGCCGATCCCCGACTTTCGCATTCTACCTTTTCGACCGGCCTCTTCGGCC
G
Found at i:13477935 original size:171 final size:170
Alignment explanation
Indices: 13477629--13477945 Score: 384
Period size: 171 Copynumber: 1.9 Consensus size: 170
13477619 GATCAGACTA
* * * *
13477629 GACTGAGGGTTGTGGCAGCAGGAGCAGCAGTAGGATTGGCAGCACGCAGAGGGGACCGGGCCGAT
1 GACTGAGGGTTGTGGCAGCAGGAGCAGCAGTAGGATCGACAGCACACAGAGGGGACCGGGCCAAT
* * * * * *
13477694 CCCCGGCTTGCGTATTCTGCCTCTCCAGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGC
66 CCCCAGCTTGCGCATTATGCCTCTCCAGCCGACTGAGCACCCACACGCTCGTTTCATGGGTTGAC
*
13477759 TTAGGCCTACGGAGTTTATTCCATGTCTAAGCCCCAATCG
131 TTAGGCATACGGAGTTTATTCCATGTCTAAGCCCCAATCG
* * * * * *
13477799 GACTGAGGGTTGTGGCAGTAGGA-CTGACAGTGGGATCGACAGCACACCGAGGGGGATCGGGCTA
1 GACTGAGGGTTGTGGCAGCAGGAGCAG-CAGTAGGATCGACAGCACACAGA-GGGGACCGGGCCA
* ** ** * **
13477863 ATCCCCAGCTTGTGCATTATGCCTCTCTGGCCGGTTGAGCATCCACACGCTCGTTTTTTGGGTTG
64 ATCCCCAGCTTGCGCATTATGCCTCTCCAGCCGACTGAGCACCCACACGCTCGTTTCATGGGTTG
13477928 ACTTAGGCATACGGAGTT
129 ACTTAGGCATACGGAGTT
13477946 CATCCCCAGT
Statistics
Matches: 120, Mismatches: 25, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
169 2 0.02
170 40 0.33
171 78 0.65
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.23
Consensus pattern (170 bp):
GACTGAGGGTTGTGGCAGCAGGAGCAGCAGTAGGATCGACAGCACACAGAGGGGACCGGGCCAAT
CCCCAGCTTGCGCATTATGCCTCTCCAGCCGACTGAGCACCCACACGCTCGTTTCATGGGTTGAC
TTAGGCATACGGAGTTTATTCCATGTCTAAGCCCCAATCG
Found at i:13477970 original size:26 final size:26
Alignment explanation
Indices: 13477934--13477986 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13477924 GTTGACTTAG
13477934 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13477960 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13477986 G
1 G
13477987 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13478485 original size:25 final size:26
Alignment explanation
Indices: 13478438--13478487 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13478428 TTGGCTTAGG
13478438 CATACGGAGTTCATTCCATGTCTAAC
1 CATACGGAGTTCATTCCATGTCTAAC
13478464 CATACGGAGTT-ATTCCCA-GTCTAA
1 CATACGGAGTTCATT-CCATGTCTAA
13478488 GATTTTGAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATGTCTAAC
Found at i:13479197 original size:26 final size:26
Alignment explanation
Indices: 13479168--13479220 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13479158 GTTGACTTAG
*
13479168 GCATACGGATTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13479194 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13479220 G
1 G
13479221 ATTGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13480610 original size:159 final size:157
Alignment explanation
Indices: 13480146--13480613 Score: 454
Period size: 159 Copynumber: 2.9 Consensus size: 157
13480136 GATCAGATCG
* * * *
13480146 GACCAAGGGTTACGACAGCAGGATCGGCGACACGCA-AGGGGGACCAGGCCGATCCCCAGCTTGC
1 GACCGAGGGTTACGACAGCAGGATCGACAACACGCAGAGGGGGACCAGGCCAATCCCCA-CTTGC
* * * * * *
13480210 ACATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCATTTCGTGAGTTGGCTTAGGCATAGG
65 GCATTCTGCCTCTCCGGTCGGCTGAGCGCCAGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
13480275 GAGTTCATTCCATGTCTAAGCCCCAGCCA
130 GAGTTCATT-CATGTCTAAGCCCCAGCCA
** ** * * * * * *
13480304 GACCGAGGGTTGTGGTAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCCATTCCTCTACTTGC
1 GACCGAGGGTTACGACAGCAGGATCGACAACACGCAGAGGGGGACCAGGCCAATCC-CCACTTGC
* * * * * * * * * * *
13480369 GCATTATGCCTTTTCAGCCGGCTCAGGGCCAGCATGCTCATTTCATGGGTTGACTTATGCATACG
65 GCATTCTGCCTCTCCGGTCGGCTGAGCGCCAGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
* ** *
13480434 GAGTTCATTCCTAGTCTAAG-ATCGGACCA
130 GAGTTCATTCAT-GTCTAAGCCCCAG-CCA
* * * ** * *
13480463 GACTGGGGGTTACGACAACAGGATCGACAACACATAGGGGGGGACCAGGCCAATCCCCGACTTAC
1 GACCGAGGGTTACGACAGCAGGATCGACAACACGCAGAGGGGGACCAGGCCAATCCCC-ACTTGC
* * *
13480528 GCATTCTGCCTCTCCGGTCGACTGAGCACCAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
65 GCATTCTGCCTCTCCGGTCGGCTGAGCGCCAGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
13480593 GAGTTCATTCAATGTCTAAGC
130 GAGTTCATTC-ATGTCTAAGC
13480614 ATACGGAGTT
Statistics
Matches: 236, Mismatches: 67, Indels: 12
0.75 0.21 0.04
Matches are distributed among these distances:
158 32 0.14
159 201 0.85
160 3 0.01
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (157 bp):
GACCGAGGGTTACGACAGCAGGATCGACAACACGCAGAGGGGGACCAGGCCAATCCCCACTTGCG
CATTCTGCCTCTCCGGTCGGCTGAGCGCCAGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
AGTTCATTCATGTCTAAGCCCCAGCCA
Found at i:13481932 original size:26 final size:26
Alignment explanation
Indices: 13481902--13481954 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13481892 ATTGACTTAG
13481902 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
13481928 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13481954 G
1 G
13481955 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13488439 original size:24 final size:25
Alignment explanation
Indices: 13488403--13488479 Score: 95
Period size: 24 Copynumber: 3.1 Consensus size: 25
13488393 CGCTCGTTTC
13488403 ATACGGAGTTCATCCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
*
13488428 AT-TGGAGTTCATTCCCC-GTCTAAG
1 ATACGGAGTTCA-TCCCCAGTCTAAG
* *
13488452 CATACGAAGTTCATTCCCAGTCTAAG
1 -ATACGGAGTTCATCCCCAGTCTAAG
13488478 AT
1 AT
13488480 CAGACCAGAC
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
24 15 0.34
25 15 0.34
26 14 0.32
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (25 bp):
ATACGGAGTTCATCCCCAGTCTAAG
Found at i:13488465 original size:26 final size:26
Alignment explanation
Indices: 13488402--13488477 Score: 95
Period size: 26 Copynumber: 3.0 Consensus size: 26
13488392 ACGCTCGTTT
13488402 CATACGGAGTTCA-TCCCCAGTCTAAG
1 CATACGGAGTTCATTCCCC-GTCTAAG
*
13488428 -AT-TGGAGTTCATTCCCCGTCTAAG
1 CATACGGAGTTCATTCCCCGTCTAAG
* *
13488452 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCCGTCTAAG
13488478 ATCAGACCAG
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
24 15 0.35
25 9 0.21
26 19 0.44
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCCGTCTAAG
Found at i:13488919 original size:158 final size:157
Alignment explanation
Indices: 13488451--13488952 Score: 459
Period size: 158 Copynumber: 3.2 Consensus size: 157
13488441 CCCCGTCTAA
* * *
13488451 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACC-AGACTGAGTGTTACGGCAGCAGGATCG-T
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACTGAGGGTTACGGCAGTAGGATCGAT
* * * **
13488514 CAGCACGCAGGGGGGATCAGGCTGATCCTCGGCTTGCGCATTCTACCTCTCCGGCCAACTGAGCG
65 -AGCACGCAGGGGGGATCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCC-GACGGCTGAGCG
13488579 CCCGCACGC-C-CATTTCGTGGGTT-AGCTTAG
128 -CC-CACGCTCTCATTTCGTGGGTTGA-CTTAG
* * ** ** * ** *
13488609 GTATAGGGAGTTCATTCCGTGTCTAAGCCCCA-ACCGGACTGAGGGTTGTGGCAGT-GGTACCGA
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGAACTGAGGGTTACGGCAGTAGG-ATCGA
* * * * * * *
13488672 CAGCACGCAGAGGGGGATCAGGCCGATCCTCAGCTTACGCATTATGCCTCTTCGGTCGGCTCAGC
64 TAGCACGCAG-GGGGGATCAGGCCGATCCTCGGCTTGCGCATTCTGCCTC-TCCGACGGCTGAGC
* *
13488737 G-CC-CGCATGCTCACTTCGTGGGTTGACTTAT
127 GCCCACGC-T-CTCATTTCGTGGGTTGACTTAG
* *
13488768 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGTAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTACGGCAGTAGGATCGATA
* * * * *
13488833 ACACGTAGGGGGGA-CGGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACTGGCTGAGCGC
66 GCACGCAGGGGGGATC-AGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGAC-GGCTGAGCGC
* * *
13488897 CCACGCTCTCATTTCATTGGTTGGCTTAG
129 CCACGCTCTCATTTCGTGGGTTGACTTAG
13488926 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
13488953 CATATGGAGT
Statistics
Matches: 272, Mismatches: 54, Indels: 36
0.75 0.15 0.10
Matches are distributed among these distances:
155 3 0.01
156 1 0.00
157 11 0.04
158 134 0.49
159 115 0.42
160 8 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTACGGCAGTAGGATCGATA
GCACGCAGGGGGGATCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACGGCTGAGCGCCC
ACGCTCTCATTTCGTGGGTTGACTTAG
Found at i:13488961 original size:26 final size:26
Alignment explanation
Indices: 13488926--13488978 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13488916 GTTGGCTTAG
13488926 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCACA-GTCTAA
*
13488952 GCATATGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
13488978 G
1 G
13488979 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:13489677 original size:26 final size:26
Alignment explanation
Indices: 13489647--13489699 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13489637 GTTGACTTAG
*
13489647 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
13489673 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
13489699 G
1 G
13489700 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:13490504 original size:13 final size:13
Alignment explanation
Indices: 13490464--13490504 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
13490454 TACGCATTAT
13490464 GCCTCTCCGGTCG
1 GCCTCTCCGGTCG
* *
13490477 ACCTCTTCGGTCG
1 GCCTCTCCGGTCG
*
13490490 GCCTCTCCGGCCG
1 GCCTCTCCGGTCG
13490503 GC
1 GC
13490505 TGAGCGCCCG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.02, C:0.46, G:0.29, T:0.22
Consensus pattern (13 bp):
GCCTCTCCGGTCG
Found at i:13491056 original size:158 final size:158
Alignment explanation
Indices: 13490826--13491203 Score: 399
Period size: 158 Copynumber: 2.4 Consensus size: 158
13490816 CGACTGGCTC
* * **
13490826 AGCGCCCGA-ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGAT
1 AGCGCCC-ACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCC
* * * * *
13490889 CGAACCGGACCAAGGGTTGCAGCAGCAGGA-TCGGCAACATGCAG-GGGGGA-CATGGTCGATGC
64 CCAACCGGACCAAGGGTTGCAGCAGCAGGACT-GGCAACACGCAGAGGGGGATC-GGGCCAAT-C
* * *
13490951 CT-GGCTTGCGCATTCTGCCTCTCCGGTCGGCT
126 CTCGGCTTGCACATTCTGCCTCTCCAGTCGACT
* *
13490983 GAGCGCCCACATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
1 -AGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
** ** * * *
13491048 CAGTCGGACCAAGGGTTGTGGCGGCAGGACTGGCAGCACGTAGAGGGGGATCGGGCCAATCCTCG
65 CAACCGGACCAAGGGTTGCAGCAGCAGGACTGGCAACACGCAGAGGGGGATCGGGCCAATCCTCG
* *
13491113 GCTTGCATATTCTGCCTCTCCATTCGACT
130 GCTTGCACATTCTGCCTCTCCAGTCGACT
* * ** * *
13491142 AGCGCTCGCACGTTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 AGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13491204 ATACGGAGTT
Statistics
Matches: 183, Mismatches: 31, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
157 4 0.02
158 141 0.77
159 37 0.20
160 1 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
AGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
AACCGGACCAAGGGTTGCAGCAGCAGGACTGGCAACACGCAGAGGGGGATCGGGCCAATCCTCGG
CTTGCACATTCTGCCTCTCCAGTCGACT
Found at i:13491928 original size:26 final size:26
Alignment explanation
Indices: 13491898--13491950 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13491888 GTTGACTTAG
*
13491898 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
13491924 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13491950 G
1 G
13491951 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13492230 original size:159 final size:158
Alignment explanation
Indices: 13492048--13492423 Score: 405
Period size: 158 Copynumber: 2.4 Consensus size: 158
13492038 CTGACTGAGT
* * * ***
13492048 GCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCTGC
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAAC
* * * * * * *
13492113 CGAACCGAGGGTTGTGGCAGCGGGATCGGTAGCATGCAGAGGGGGATCCAGTCGATCCCCGACTT
66 CGAACCAAGGGTCGCGGCAGCAGGATCGATAGCACGCAG-GGGGGATCCAGTCGATCCCCGAATT
* * * *
13492178 GCGCATTATGCTTCTCC-GATCGGCTTAAC
130 ACGCATTATGCCTCTCCAG-TAGGCTGAAC
* ** * * **
13492207 GCCCGCACGCTCATTTCGTGGGTTGATTTAGGCATACAGAGTTCATTCCCA-ATCTAAGATCAAA
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAAA
* ** * *
13492271 CCGCACCAAGGGTCGCGGCAGCAGGATCGATAGCACGCAGGGGGGATCGGGTCGGTCCCTGAATT
65 CCGAACCAAGGGTCGCGGCAGCAGGATCGATAGCACGCAGGGGGGATCCAGTCGATCCCCGAATT
* *
13492336 ACGCATTCTGCCTCTCCAGTAGGCTGAGC
130 ACGCATTATGCCTCTCCAGTAGGCTGAAC
* * *
13492365 GCCCGCTCACTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13492424 ATACGGAGTT
Statistics
Matches: 174, Mismatches: 40, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
157 3 0.02
158 87 0.50
159 81 0.47
160 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAAC
CGAACCAAGGGTCGCGGCAGCAGGATCGATAGCACGCAGGGGGGATCCAGTCGATCCCCGAATTA
CGCATTATGCCTCTCCAGTAGGCTGAAC
Found at i:13492432 original size:26 final size:26
Alignment explanation
Indices: 13492396--13492448 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13492386 GTTGGCTTAG
*
13492396 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13492422 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13492448 G
1 G
13492449 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13492899 original size:159 final size:158
Alignment explanation
Indices: 13492687--13493099 Score: 435
Period size: 159 Copynumber: 2.6 Consensus size: 158
13492677 TCGGGCTAAA
* * * *
13492687 CCCTGACTTGCGCATTATGCCT-TTCCAGCCGACTGAGCACCCGCACGCCCGTTTTGTGGGTTGG
1 CCCTGACTTGCGCATTATGCCTCTT-CGGTCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGG
* * * *
13492751 CTTAGGCATAGGGAGTTCATTCCATGTCTAA-ACCCCAG-TCAGACAGAGGGTTATGGTAGTGGG
65 CTTAGGCATACGGAGTTCATTCCATGTCTAAGA--CCAGATCAGACAGAGGGTTACGGCAGTAGG
* * ** *
13492814 A-CTGACCGCACGCAGAGGGGGAA-CAGTTCGAT
128 ATC-GACAGCACGC--AGGGCGAACCAGGCCAAT
* * * * *
13492846 -CCTCGACTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGA
1 CCCT-GACTTGCGCATTATGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGG
* * *
13492910 CTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGTAGGA
65 CTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGATCAGACAGAGGGTTACGGCAGTAGGA
*
13492974 TCGACAGCACGCAGGGCGAACCGGGCCAAT
129 TCGACAGCACGCAGGGCGAACCAGGCCAAT
* ** * * * * *
13493004 CCCTGGCTTATGCATTCTGCCTCTCCGATCGGTTGAGCACCCGCACGCTCATTTTGTGGGTTGGC
1 CCCTGACTTGCGCATTATGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGGC
13493069 TTAGGCATACGGAGTTCATTCCATGTCTAAG
66 TTAGGCATACGGAGTTCATTCCATGTCTAAG
13493100 CATACGGAGT
Statistics
Matches: 210, Mismatches: 35, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
157 10 0.05
158 86 0.41
159 107 0.51
160 7 0.03
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
CCCTGACTTGCGCATTATGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGGC
TTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGATCAGACAGAGGGTTACGGCAGTAGGATC
GACAGCACGCAGGGCGAACCAGGCCAAT
Found at i:13493124 original size:26 final size:26
Alignment explanation
Indices: 13493073--13493125 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13493063 GTTGGCTTAG
*
13493073 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
13493099 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
13493125 G
1 G
13493126 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:13493295 original size:677 final size:680
Alignment explanation
Indices: 13491985--13494002 Score: 2092
Period size: 677 Copynumber: 2.9 Consensus size: 680
13491975 CAGGATTGGC
* * * * * * *
13491985 AGCACGCAG-GGGGGATCGGGCTGATCCCTGGCTTGCACATTCTACCTTTCTGGCTGACTGAGTG
1 AGCACGCAGAGGGGGATCGGGCTAAACCCTGGCTTGCGCATTCTGCCTTTC-CGCCGACTGAGCG
* * * *
13492049 CCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCTGCC
65 CCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCA
* * * * *
13492114 GAACCGAGGGTTGTGGCAGCGGGATCGGTA-GCATGCAGAGGGGGATCCAGTCGATCCCCGACTT
130 G-ACCGAGGGTTGTGGCAGTGGGA-CCG-ACGCACGCAGAGGGGGA-ACAGTCGATCCTCGACTT
* * * * * *
13492178 GCGCATTATGCTTCTCCGATCGGCTTAACGCCCGCACGCTCATTTCGTGGGTTGATTTAGGCATA
191 GCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * *
13492243 CAGAGTTCATTCCCAATCTAAGATCA-AACCGCACCAAGGGTCGCGGCAGCAGGATCGATAGCAC
256 CGGAGTTCATTCCCAATCTAAGATCAGATCAG-ACCGAGGGTCGCGGCAGTAGGATCGATAGCAC
* * * * * *
13492307 GCAGGGGGGATCGGGTCGGTCCCTGAATTACGCATTCTGCCTCTCC-AGTAGGCTGAGCGCCCGC
320 GCAGGGGGGACCGGGCCGGTCCCTGACTTACGCATTCTGCCTCTCCGA-TCGGTTGAGCACCCGC
* *
13492371 TCACTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCA
384 ACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCA
* *** * * * *
13492436 TTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTTGTAGCAGCAGGACCAGTAGCAGGATCGACAG
449 TTCCCAGTCTAAGATCAGACCGAACT-GAGGGTTACGGTAGTAGGACTAGCAGCAGGATCGACAG
* * * ** * *
13492500 CATGCAGGGGGGACCGAACCGATCCCCGGCTTGCGCATTCTACCTCTCCTACTGGATGAGTGCCC
513 CATGCAGGGGGGACAG-GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCCGCCGGATGAGCGCCC
* *
13492565 GCACGCTCATTTCACGGGTTGGCTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCCCTAGCTGA
577 GCACGCTCGTTTC-GGGGTTGGCTTAGGCATACGA-AGTTCATTCCATGTCTAAGCCCTAGCTGA
** * *
13492629 A-CCA-TGGCAG-C-AGGAT-C-GG-CAGCGGGAT-CGG-T
640 AGCCATTCCCAGTCTAAGATACTGGACAGAGGGATACGGTT
* * *
13492661 AGCACGCAGAGGGGGATCGGGCTAAACCCTGACTTGCGCATTATGCCTTTCCAGCCGACTGAGCA
1 AGCACGCAGAGGGGGATCGGGCTAAACCCTGGCTTGCGCATTCTGCCTTTCC-GCCGACTGAGCG
* * *
13492726 CCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGTC
65 CCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-C
* * * *
13492791 AGACAGAGGGTTATGGTAGTGGGACTGACCGCACGCAGAGGGGGAACAGTTCGATCCTCGACTTG
129 AGACCGAGGGTTGTGGCAGTGGGACCGA-CGCACGCAGAGGGGGAACAG-TCGATCCTCGACTTG
* *
13492856 CGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATAC
192 CGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
13492921 GGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGC
257 GGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTCGCGGCAGTAGGATCGATAGCACGC
* * ** * * *
13492986 AGGGCGAACCGGGCCAATCCCTGGCTTATGCATTCTGCCTCTCCGATCGGTTGAGCACCCGCACG
322 AGGGGGGACCGGGCCGGTCCCTGACTTACGCATTCTGCCTCTCCGATCGGTTGAGCACCCGCACA
* *
13493051 CTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
387 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
* * * *
13493116 CCAGCCTAAGATCAGACCGAACTGAGGGTTACGGTAGTAGAACTAGCAGTAGGATCGATAGCATG
452 CCAGTCTAAGATCAGACCGAACTGAGGGTTACGGTAGTAGGACTAGCAGCAGGATCGACAGCATG
* * * * * *
13493181 CAGGGTGGATCAGGTCGATCCCTGGCTTGCGCATTCTGCCTTTCCCGCCGGTTGAGCGCCCGCAT
517 CAGGGGGGA-CAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCCGCCGGATGAGCGCCCGCAC
* * *
13493246 GCTCGTTTCGGAGGTTGACTTAGGCATACGAAGTTCATCTCCA-GTCTAAG-CATA--TGAAGTT
581 GCTCGTTTCGG-GGTTGGCTTAGGCATACGAAGTTCAT-TCCATGTCTAAGCCCTAGCTGAAG-C
* *
13493307 CATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGTATT
643 CATTCCCAGTCTAAGAT---ACTGGACAGAGGGATACGG--TT
* * ** * ** *
13493350 AGGATCGAAAACACGTAGGGGG-TCCGAGC-CGATCCTCGGCTCACGCATTCTGCCTCTCCGACC
1 AGCA-CG----CA-G-AGGGGGAT-CGGGCTAAACCCT-GGCTTGCGCATTCTGCCTTTCCG-CC
* *
13493413 GGCTGAGCGCCCGCATGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
56 GACTGAGCGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * * * *
13493478 GCCCCAGCCGGACCGAGAGTTGTAGCAGCT-GGACCGGCAGCACGCAGAGGGGGATCGAGCCGAA
121 GCCCCAG-CAGACCGAGGGTTGTGGCAG-TGGGACCGAC-GCACGCAGAGGGGGAAC-AGTCG-A
* * * *
13493542 TTCT-GACTTACGCATTATCCCTCTCCGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGA
181 TCCTCGACTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * * * *
13493606 CTTAGGCATACGGAGTTCATTCCCAATCTAAGAACGGAAT-GGACCGAGGGTCACGGTAGTAGGA
246 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAG-ATCAGACCGAGGGTCGCGGCAGTAGGA
* * * * * ** * *
13493670 TCGATAGCACGCAGGGGGGACTGGGCCGGTGCCTAACTTGCGCATTCTACCTCTCCGGCCAGTTA
310 TCGATAGCACGCAGGGGGGACCGGGCCGGTCCCTGACTTACGCATTCTGCCTCTCCGATCGGTTG
* * * *
13493735 AGCACTCACACACTCGTTTCGTGGGTTGGCTTAGGAATACAGAGTTCATTCCATGTCTAAGCATA
375 AGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
* * *
13493800 CGGAGTTCATTCCCAGTCTAAGTTCAGACC-AGACTGAGGGTTACGGTA-TCAGGCCTAGCAACA
440 CGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACTGAGGGTTACGGTAGT-AGGACTAGCAGCA
* * * * ** * * *
13493863 GGATCGGCAGC-TCGTAGGGGGGACCGGGCCGATCCCCGACTTATGCATTCTGTCTCTCCGGTCG
503 GGATCGACAGCAT-GCAGGGGGGA-CAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCCGCCG
* * * * *
13493927 GCTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAG
566 GATGAGCGCCCGCACGCTCGTTTCG-GGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
13493992 CCCTAGCTGAA
630 CCCTAGCTGAA
13494003 TCGAGGGTTG
Statistics
Matches: 1105, Mismatches: 186, Indels: 79
0.81 0.14 0.06
Matches are distributed among these distances:
674 4 0.00
675 1 0.00
676 20 0.02
677 510 0.46
678 15 0.01
679 4 0.00
683 1 0.00
684 2 0.00
685 6 0.01
686 3 0.00
689 4 0.00
690 2 0.00
694 2 0.00
695 15 0.01
696 499 0.45
697 13 0.01
699 4 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (680 bp):
AGCACGCAGAGGGGGATCGGGCTAAACCCTGGCTTGCGCATTCTGCCTTTCCGCCGACTGAGCGC
CCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAG
ACCGAGGGTTGTGGCAGTGGGACCGACGCACGCAGAGGGGGAACAGTCGATCCTCGACTTGCGCA
TTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
TTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTCGCGGCAGTAGGATCGATAGCACGCAGGG
GGGACCGGGCCGGTCCCTGACTTACGCATTCTGCCTCTCCGATCGGTTGAGCACCCGCACACTCG
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCGAACTGAGGGTTACGGTAGTAGGACTAGCAGCAGGATCGACAGCATGCAGG
GGGGACAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCCGCCGGATGAGCGCCCGCACGCTCG
TTTCGGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCTAGCTGAAGCCATTCCCA
GTCTAAGATACTGGACAGAGGGATACGGTT
Found at i:13493298 original size:26 final size:26
Alignment explanation
Indices: 13493269--13493321 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13493259 GTTGACTTAG
13493269 GCATACGAAGTTCA-TCTCCAGTCTAA
1 GCATACGAAGTTCATTC-CCAGTCTAA
*
13493295 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13493321 G
1 G
13493322 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13493299 original size:196 final size:196
Alignment explanation
Indices: 13492965--13493347 Score: 502
Period size: 196 Copynumber: 2.0 Consensus size: 196
13492955 GAGGGTTGCG
* *
13492965 GCAGTAGGATCGACAGCACGCAGGGCGAACCGGGCCAATCCCTGGCTTATGCATTCTGCCTCTCC
1 GCAGTAGGATCGACAGCACGCAGGGCGAACCAGGCCAATCCCTGGCTTACGCATTCTGCCTCTCC
* * * *
13493030 GATCGGTTGAGCACCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 GACCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGT
* *
13493095 CTAAGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGAACTGAGGGTTACGGTAGTAGAACT
131 CTAAGCATACGAAGTTCATTCCCAGCCTAAGATCAGACCGAACCGAGGGTTACGGTAGTAGAACT
13493160 A
196 A
* * * * * * * * *
13493161 GCAGTAGGATCGATAGCATGCAGGGTGGATCAGGTCGATCCCTGGCTTGCGCATTCTGCCTTTCC
1 GCAGTAGGATCGACAGCACGCAGGGCGAACCAGGCCAATCCCTGGCTTACGCATTCTGCCTCT-C
* * *
13493226 CG-CCGGTTGAGCGCCCGCATGCTCGTTTCG-GAGGTTGACTTAGGCATACGAAGTTCATCTCCA
65 CGACCGGTTGAGCACCCGCACGCTCATTTCGTG-GGTTGACTTAGGCATACGAAGTTCAT-TCCA
* * * *
13493289 -GTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGTA
128 TGTCTAAGCATACGAAGTTCATTCCCAGCCTAAGATCAGACCGAACCGAGGGTTACGGTA
13493348 TTAGGATCGA
Statistics
Matches: 160, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
195 1 0.01
196 152 0.95
197 7 0.04
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (196 bp):
GCAGTAGGATCGACAGCACGCAGGGCGAACCAGGCCAATCCCTGGCTTACGCATTCTGCCTCTCC
GACCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGT
CTAAGCATACGAAGTTCATTCCCAGCCTAAGATCAGACCGAACCGAGGGTTACGGTAGTAGAACT
A
Found at i:13493679 original size:159 final size:158
Alignment explanation
Indices: 13493303--13493795 Score: 430
Period size: 159 Copynumber: 3.1 Consensus size: 158
13493293 AAGCATATGA
* * * *
13493303 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGTATTAGGATCGAAAACACG--T
1 AGTTCATTCCCAGTCTAAGAACAGACTGGACCGAGGGTTACGGTAGTAGGATCGAAAGCACGCAG
* * * * * *
13493366 AGGGGG-TCCGAGCCGATCCTCGGCTCACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCATG
66 AGGGGGAT-CGAGCCGATCCT-GACTTACGCATTCTACCTCTCCGGCCGGCTAAGCGCCCGCACG
*
13493430 C-CTGTTTCGTGGGTTGGCTTAGGCATAGGG
129 CTC-GTTTCGTGGGTTGGCTTAGGCATACGG
** * * *** * * **
13493460 AGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGAGTTGTAGCAGCT-GGACCGGCAGCACG
1 AGTTCATTCCCA-GTCTAAG-AACAGACTGGACCGAGGGTTACGGTAG-TAGGATCGAAAGCACG
* * * *
13493522 CAGAGGGGGATCGAGCCGAATTCTGACTTACGCATTATCCCTCTCCGGCCGGCTCAGCGCCCGCA
63 CAGAGGGGGATCGAGCCG-ATCCTGACTTACGCATTCTACCTCTCCGGCCGGCTAAGCGCCCGCA
*
13493587 CGCTCGTTTCGTGGGTTGACTTAGGCATACGG
127 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * * *
13493619 AGTTCATTCCCAATCTAAGAACGGAATGGACCGAGGGTCACGGTAGTAGGATCGATAGCACGCAG
1 AGTTCATTCCCAGTCTAAGAACAGACTGGACCGAGGGTTACGGTAGTAGGATCGAAAGCACGCAG
* * * * * * * * * *
13493684 -GGGGGA-CTGGGCCGGTGCCTAACTTGCGCATTCTACCTCTCCGGCCAGTTAAGCACTCACACA
66 AGGGGGATC-GAGCCGAT-CCTGACTTACGCATTCTACCTCTCCGGCCGGCTAAGCGCCCGCACG
* *
13493747 CTCGTTTCGTGGGTTGGCTTAGGAATACAG
129 CTCGTTTCGTGGGTTGGCTTAGGCATACGG
13493777 AGTTCATT-CCATGTCTAAG
1 AGTTCATTCCCA-GTCTAAG
13493796 CATACGGAGT
Statistics
Matches: 265, Mismatches: 57, Indels: 27
0.76 0.16 0.08
Matches are distributed among these distances:
156 3 0.01
157 44 0.17
158 93 0.35
159 116 0.44
160 9 0.03
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGAACAGACTGGACCGAGGGTTACGGTAGTAGGATCGAAAGCACGCAG
AGGGGGATCGAGCCGATCCTGACTTACGCATTCTACCTCTCCGGCCGGCTAAGCGCCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGG
Found at i:13493807 original size:26 final size:26
Alignment explanation
Indices: 13493771--13493821 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13493761 TGGCTTAGGA
13493771 ATACAGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
*
13493797 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
13493822 TTCAGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:13494160 original size:26 final size:26
Alignment explanation
Indices: 13494124--13494176 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13494114 GTTAGCTTAG
*
13494124 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13494150 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13494176 G
1 G
13494177 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13495535 original size:25 final size:26
Alignment explanation
Indices: 13495484--13495535 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13495474 GTTGACTTAG
13495484 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13495510 GCATATGGAGTTCAT-TCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13495535 G
1 G
13495536 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13495703 original size:26 final size:26
Alignment explanation
Indices: 13495667--13495719 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13495657 GTCGGCTTAG
13495667 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
13495693 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13495719 G
1 G
13495720 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13495804 original size:184 final size:183
Alignment explanation
Indices: 13495464--13495878 Score: 514
Period size: 184 Copynumber: 2.3 Consensus size: 183
13495454 CTAGTACGCT
* * *
13495464 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATTCC
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCC
* * *
13495528 AGTCTAAGATCAGACCAGATCGAAGGTTGCGACAGAAGGTTCGGCAGCACGCAGAAGGGATCGGG
65 AGTCTAAGATCAGACCAGATCGAAGGTTGCGACAGAAGGATCGGCAGCACGCAGAAGGGACCGGC
* *
13495593 CTGATCCTCGACTTAAGCATTCTGCCTCTCCGGCCAGCTT-AGCACCCGCACGA-C
130 CTGATCCCCGACTTAAGCATTCTGCCTCTCCGACC-GCTTGAGCACCCGCAC-ACC
* *
13495647 CGTTTCGTGGGTCGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCT
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC-
* * * ** ** *
13495712 AGTCTAAGATCAGATCAGATCGAAGGTTGCGGCAGTAGGATCGGCAGCACGTTGGGGGGCCCAGG
65 AGTCTAAGATCAGACCAGATCGAAGGTTGCGACAGAAGGATCGGCAGCACGCAGAAGGGACC-GG
* ** * * * *
13495777 CCT-ATCCCCGGCTTGTGCATTCTGCCTCTTCGATCGGTTGAGCGCCCGCACACC
129 CCTGATCCCCGACTTAAGCATTCTGCCTCTCCGACCGCTTGAGCACCCGCACACC
* *
13495831 CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13495879 CCCAGCCGGA
Statistics
Matches: 198, Mismatches: 29, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
182 3 0.02
183 59 0.30
184 132 0.67
185 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (183 bp):
CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCA
GTCTAAGATCAGACCAGATCGAAGGTTGCGACAGAAGGATCGGCAGCACGCAGAAGGGACCGGCC
TGATCCCCGACTTAAGCATTCTGCCTCTCCGACCGCTTGAGCACCCGCACACC
Found at i:13496076 original size:159 final size:159
Alignment explanation
Indices: 13495833--13496197 Score: 380
Period size: 159 Copynumber: 2.3 Consensus size: 159
13495823 CGCACACCCA
* * *
13495833 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTT
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCAAGGGTT
* * * * *
13495898 ATGGCAGCGGGACCGATAGCATGCAA-AGAGGGATCGGATCAATCCCTGACTTACACATTATGCC
66 ACGGCAGCAGGACCGATAGCAAGCAAGAGA-GGATCGGATCAATCCCCGACTTACACATTATACC
* * ** *
13495962 T-TTTCGGCCAACTCAGTGCCTGCACGCTCG
130 TCTCT-GACCAACTCAGCACCCGCACGCTCG
* * * * **
13495992 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAA-TATCAGATCGGACTGAGGG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCGGACCAAGGG
* * * * * * *
13496055 TTGCGGCAGCAGGATCGATAGCAAGCAGGCGAGGATCGGATCGATCCCCGACTTACGCATTCTAC
64 TTACGGCAGCAGGACCGATAGCAAGCAAGAGAGGATCGGATCAATCCCCGACTTACACATTATAC
** * *
13496120 CTCTCTGACCGGCTGAGCACCCGCACGCTTG
129 CTCTCTGACCAACTCAGCACCCGCACGCTCG
13496151 TTTCATGGGTT-ACCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TTTCATGGGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13496198 TACGGAGTTC
Statistics
Matches: 167, Mismatches: 32, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
158 7 0.04
159 152 0.91
160 8 0.05
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (159 bp):
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCAAGGGTT
ACGGCAGCAGGACCGATAGCAAGCAAGAGAGGATCGGATCAATCCCCGACTTACACATTATACCT
CTCTGACCAACTCAGCACCCGCACGCTCG
Found at i:13496199 original size:26 final size:26
Alignment explanation
Indices: 13496169--13496221 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13496159 GTTACCTTAG
13496169 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
13496195 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13496221 G
1 G
13496222 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13496475 original size:515 final size:496
Alignment explanation
Indices: 13495517--13496710 Score: 1285
Period size: 515 Copynumber: 2.4 Consensus size: 496
13495507 TAAGCATATG
* * * * ** *
13495517 GAGTTCATT-CCAGTCTAAGATCAGACCAGATCGAAGGTTGCGACAGAAGGTTCGGCAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGATAGCACACA
* * * * * * *
13495581 -GAAGGGATCGG-GCTGATCCTCGACTTAAGCATTCTGCCTCTCCGGCCAGCTTAGCACCCGCAC
66 GGGA-GGATCGGATC-GATCCCCGACTTACGCATTCTGCCTCT-CGACCGGCTGAGCACCCGCAC
* *
13495644 GAC-CGTTTCGTGGGTCGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
128 G-CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
* * ** *
13495708 TCCTAGTCTAAGATCAGATCAGATCGAAGGTTGCGGCAGTAGGATCGGCAGCACGTTGGGGGGCC
192 TCCTAGTCTAAGATCAGATCAGACCGAAGGTTGCGGCAGTAGGATCGACAGCACGAAGGGGGGAC
* * *
13495773 CAGGCCTATCCCCGGCTTGTGCATTCTGCCTCTTCGATCGGTTGAGCGCCCGCACACCCATTTCA
257 CAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGACCGGTTGAGAGCCCGCACACCCATTTCA
* *
13495838 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTATGGC
322 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACCAAGGGTTATGGC
* * * * *
13495903 AGCGGGACCGATAGCATGCAAAGAGGGATCGGATCAATCCCTGACTTACACATTATGCCT-TTTC
387 AAC-GAACCGATAGCA-GCAAAGAGGGA--GGACCAACCCCTGACTTACACATTATGCCTCTCT-
* *** * * *
13495967 GGCCAACTCAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
447 GGCCAACTCAATGCCCAAACGCTCATTTCATGGGTTGACTTAGGCATACA
* * *
13496017 GAGTTCATTCCCAGTCTAATATCAGATCGGA-CTGAGGGTTGCGGCAGCAGGATCGATAGCA-AG
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGACAGCAGGATCGATAGCACA-
*
13496080 CAGGCGAGGATCGGATCGATCCCCGACTTACGCATTCTACCTCTCTGACCGGCTGAGCACCCGCA
64 CAGG-GAGGATCGGATCGATCCCCGACTTACGCATTCTGCCTCTC-GACCGGCTGAGCACCCGCA
* **
13496145 CGCTTGTTTCATGGGTTACCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
127 CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
* *
13496210 TCCTAGTCTAAGATCAGATCGGACCGAGGGTTACGACAACAGGACCAGCAGTAGGATCGACAGCA
192 TCCTAGTCTAAGATCAGATCAGACCGAAGGTT--G----C--G----GCAGTAGGATCGACAGCA
* *** * *
13496275 TGCAAGGGGGGATTGGGTCGATCCTCGGCTTGTGCATTCTGCCTC-TCTGACCGGTTGAGAGCCC
245 CG-AAGGGGGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTC-GACCGGTTGAGAGCCC
** * * * *
13496339 GCATGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTAGGA
308 GCACACCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCAGGA
*** * *
13496404 TTGAGGGTTATGGCAAC-AACGTCGGTAGCA-CATAGAGGG-GGACCAAGCCGATCCTCGACTTA
373 CCAAGGGTTATGGCAACGAAC--CGATAGCAGCAAAGAGGGAGGACCAA-CC---CCT-GACTTA
** * *
13496466 CGTATTATGCCTCTCTGGCCGATTCAATGCCCAAACGCTCATTTCATGGGTTGACTTAGGCATAC
431 CACATTATGCCTCTCTGGCCAACTCAATGCCCAAACGCTCATTTCATGGGTTGACTTAGGCATAC
13496531 A
496 A
* * *
13496532 GAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGTAGGATCGATAGCACATA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGATAGCACACA
* * * * * * *
13496597 GGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCAGCTGGCTGAGCGCCCGCATGC
66 GGGAGGATCGGATCGATCCCCGACTTACGCATTCTGCCTCTCGA-CCGGCTGAGCACCCGCACGC
*
13496662 TCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
130 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13496711 CCTAACCGGA
Statistics
Matches: 575, Mismatches: 86, Indels: 52
0.81 0.12 0.07
Matches are distributed among these distances:
500 10 0.02
501 44 0.08
502 135 0.23
503 2 0.00
504 1 0.00
508 1 0.00
510 7 0.01
511 1 0.00
513 11 0.02
514 121 0.21
515 238 0.41
516 4 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (496 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGATAGCACACA
GGGAGGATCGGATCGATCCCCGACTTACGCATTCTGCCTCTCGACCGGCTGAGCACCCGCACGCT
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCT
AGTCTAAGATCAGATCAGACCGAAGGTTGCGGCAGTAGGATCGACAGCACGAAGGGGGGACCAGG
CCGATCCCCGGCTTGTGCATTCTGCCTCTTCGACCGGTTGAGAGCCCGCACACCCATTTCATGGG
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACCAAGGGTTATGGCAACG
AACCGATAGCAGCAAAGAGGGAGGACCAACCCCTGACTTACACATTATGCCTCTCTGGCCAACTC
AATGCCCAAACGCTCATTTCATGGGTTGACTTAGGCATACA
Found at i:13496686 original size:158 final size:157
Alignment explanation
Indices: 13496258--13497511 Score: 751
Period size: 158 Copynumber: 7.8 Consensus size: 157
13496248 ACAGGACCAG
* ** * *
13496258 CAGTAGGATCGACAGCATGCA-AGGGGGGATTGGGTCGATCCTCGGCTTGTGCATTCTGCCTCTC
1 CAGTAGGATCGATAGCA--CATAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTC
* * * * *
13496322 TGACCGGTTGAGAGCCCGCATGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATG
64 CG-CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
** * ** *
13496387 TCTAAGCCCCAGTA--GGATTGAGGGTTATGGCAA
128 TCTAAG-ATC-GGACCGGACCGAGGG-T-T-GCGA
* * ** * * * * * *
13496420 CA--ACG-TCGGTAGCACATAGAGGGGGACCAAGCCGATCCTCGACTTACGTATTATGCCTCTCT
1 CAGTAGGATCGATAGCACATAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTC-
* ** * ** ** * * *
13496482 GGCCGATTCAATGCCCAAACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-G
64 CGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATG
*
13496546 TCTAAGATCGGACCGGATCGAGGGTTGCGA
128 TCTAAGATCGGACCGGACCGAGGGTTGCGA
* *
13496576 CAGTAGGATCGATAGCACATAGGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCA
1 CAGTAGGATCGATAGCACATAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC-
* * *
13496641 GCTGGCTGAGCGCCCGCATGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
65 GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
** ** * * *
13496706 TAAGCCCTAACCGGACCGATGGTTGTGG
130 TAAGATCGGACCGGACCGAGGGTTGCGA
** * * * ** *
13496734 CAGTAGGATCGATAGCACGCAGAAGGGGACCGGGTTGAT-CCCAGCTTGCGCATTAGGTCTCTCC
1 CAGTAGGATCGATAGCACATAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC
* * * * * * * * *
13496798 GGCTGGCTCAACACCCGAATGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-G
65 -GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATG
* * *
13496862 TCTAAGATCAGACCAGACCGAGGGTTGCGG
128 TCTAAGATCGGACCGGACCGAGGGTTGCGA
* * * ** * * * * * *
13496892 TAATAAGATCGATAGCACGCAGGGGGCATCGAGTCGATCCCCGACTTGGGCATTCTACCTCTCCG
1 CAGTAGGATCGATAGCACATAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
* * *
13496957 ACCGTCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GT
66 -CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGT
* * * *
13497021 CTAAGATCAGATCAGACTGAGGGTAGCGGTAGCAGGAA
129 CTAAGATCGGACCGGACCGAGGGT-----T-GC--G-A
* * * * **
13497059 CAGTAGTA-GGATTGGCAGCAT-GTAGGGGGA-CGGGGCTGATCCCCGGCTTATGCATTCTGCCT
1 CAGTAGGATCGA-TAGCA-CATAG--GGGGGACCGGGTC-GATCCCCGGCTTGCGCATTCTGCCT
** * * * *
13497121 CTTTGACCGGCTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
61 CTCCG-CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
* ** * * * ** * *
13497186 ATGTCTAAG-CCCCAGCTGAATCGAGCATTGTGG
125 ATGTCTAAGATCGGA-CCGGACCGAGGGTTGCGA
** * * * * * *
13497219 CAGCGGGACCGATAGCACGCATA-GGGGGACCTGGCCGATCCCTGGCTTGCGCATTATGCCTGTC
1 CAGTAGGATCGATAGCA--CATAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTC
* * * * * * *
13497283 CGGTCGGCTCAACGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAA
64 C-GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CC-A
* * * *
13497348 T-T-TAAGATTGGACCAGACCAAGGGTTGTGA
126 TGTCTAAGATCGGACCGGACCGAGGGTTGCGA
* * * * * * ** * *
13497378 CAGCAGGATTGACAGCACACAGAGGGGACCAGGTCGATCCCCAACTTGCTCGTTCTGCCTCTCCG
1 CAGTAGGATCGATAGCACATAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC-
* * * *
13497443 GTCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTTATTCCATGTC
65 GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
13497508 TAAG
130 TAAG
13497512 CATGCGAAGT
Statistics
Matches: 838, Mismatches: 212, Indels: 88
0.74 0.19 0.08
Matches are distributed among these distances:
156 7 0.01
157 26 0.03
158 417 0.50
159 232 0.28
160 24 0.03
161 9 0.01
162 2 0.00
163 2 0.00
164 3 0.00
166 3 0.00
167 9 0.01
168 10 0.01
169 94 0.11
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
CAGTAGGATCGATAGCACATAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGATCGGACCGGACCGAGGGTTGCGA
Found at i:13496933 original size:316 final size:317
Alignment explanation
Indices: 13496264--13497025 Score: 886
Period size: 316 Copynumber: 2.4 Consensus size: 317
13496254 CCAGCAGTAG
* * * * * *
13496264 GATCGACAGCATGCAAGGGGGGATTGGGTCGATCCTCGGCTTGTGCATTCTGCCTCTCTGACCGG
1 GATCGATAGCACGC-AGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGG
* *
13496329 TTGAGAGCCCGCATGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 CTGAGCGCCCGCATGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
** ** * * *
13496394 CCCAGTAGGATTGAGGGTTATGGCAACAACGTCGGTAGCACATAGAGGGGGACCAAGCCGATCCT
130 CCCAACAGGACCGAGGGTTATGGCAACAACGTCGATAGCACACAGAAGGGGACCAAGCCGATCCT
* * * * ** *
13496459 CGACTTACGTATTATGCCTCTCTGGCCGATTCAATGCCCAAACGCTCATTTCATGGGTTGACTTA
195 CGACTTACGCATTAGGCCTCTCCGGCCGACTCAACACCCAAACGCCCATTTCATGGGTTGACTTA
* * * * *
13496524 GGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGTAG
260 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAATAA
** * *
13496582 GATCGATAGCACATAGGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCC-AGCTGG
1 GATCGATAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CCGG
13496646 CTGAGCGCCCGCATGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 CTGAGCGCCCGCATGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * * ** * * ** **
13496711 CCTAACCGGACCGATGGTTGTGGC-AGTAGGATCGATAGCACGCAGAAGGGGACCGGGTTGATCC
130 CCCAACAGGACCGAGGGTTATGGCAACAACG-TCGATAGCACACAGAAGGGGACCAAGCCGATCC
* * * * * *
13496775 -C-AGCTTGCGCATTAGGTCTCTCCGGCTGGCTCAACACCCGAATGCCCATTTCATGGGTTGACT
194 TCGA-CTTACGCATTAGGCCTCTCCGGCCGACTCAACACCCAAACGCCCATTTCATGGGTTGACT
* **
13496838 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAATAA
258 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAATAA
* * * * * *
13496898 GATCGATAGCACGCAGGGGGCATCGAGTCGATCCCCGACTTGGGCATTCTACCTCTCCGACCGTC
1 GATCGATAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGC
** * *
13496963 TGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
66 TGAGCGCCCGCATGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
13497026 ATCAGATCAG
Statistics
Matches: 373, Mismatches: 66, Indels: 12
0.83 0.15 0.03
Matches are distributed among these distances:
315 1 0.00
316 212 0.57
317 150 0.40
318 10 0.03
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (317 bp):
GATCGATAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGC
TGAGCGCCCGCATGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
CCAACAGGACCGAGGGTTATGGCAACAACGTCGATAGCACACAGAAGGGGACCAAGCCGATCCTC
GACTTACGCATTAGGCCTCTCCGGCCGACTCAACACCCAAACGCCCATTTCATGGGTTGACTTAG
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAATAA
Found at i:13497454 original size:486 final size:485
Alignment explanation
Indices: 13496598--13497511 Score: 1142
Period size: 486 Copynumber: 1.9 Consensus size: 485
13496588 TAGCACATAG
* * * *
13496598 GGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCAGCTGGCTGAGCGCCCGCATGCT
1 GGGGGATCGGGGCGATCCCCGGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCC
* * * *
13496663 CGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAACCGGACCGATGG
66 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGATGA
* * ** *
13496728 TTGTGGCAGTAGGATCGATAGCACGCAGAAGGGGACCGGGTTGATCCCAGCTTGCGCATTAGGTC
131 TTGTGGCAGCAGGACCGATAGCACGCAGAAGGGGACCGGGCCGATCCCAGCTTGCGCATTAGGCC
*
13496793 TCTCCGGCTGGCTCAACACCCGAATGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
196 TCTCCGGCTGGCTCAACACCCGAACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
* * ** * * * *
13496858 CCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAATAAGATCGATAGCACGCAGGGGGCATCG
261 CCAATCTAAGATCAGACCAGACCAAGGGTTGCGACAACAAGATCGACAGCACACAGGGGGCACCG
* * * *
13496923 AGTCGATCCCCGACTTGGGCATTCTACCTCTCCGACCGTCTGAGCGCCCGCACACTCGTTTCGTG
326 AGTCGATCCCCAACTTGCGCATTCTACCTCTCCGACAGTCTGAGCGCCCGCACACTCGTTTCATG
*
13496988 GGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCAGACTGAGGGTAGCGGTA
391 GGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGATCAGATCAGACTGAGGGTAGCGGTA
13497052 GCAGGAACAGTAGTAGGATTGGCAGCATGTA
455 GCAGGAACAGTAGTAGGATTGGCAGCATGTA
* ** *
13497083 GGGGGA-CGGGGCTGATCCCCGGCTTATGCATTCTGCCTCT-TTGACCGGCTGAGTGCCCGCACG
1 GGGGGATCGGGGC-GATCCCCGGCTTACGCATTCTGCCTCTCCAG-CCGGCTGAGCGCCCGCACG
* * * * *
13497146 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGAATCGA-
64 CCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAT
* * * * *
13497210 GCATTGTGGCAGCGGGACCGATAGCACGCATAGGGGGACCTGGCCGATCCCTGGCTTGCGCATTA
129 G-ATTGTGGCAGCAGGACCGATAGCACGCAGAAGGGGACCGGGCCGATCCC-AGCTTGCGCATTA
* * * * * * *
13497275 TGCCTGTCCGG-TCGGCTCAACGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCTTACGGAGTT
192 GGCCTCTCCGGCT-GGCTCAACACCCGAACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTT
* ** * * * *
13497339 CATTCCCAATTTAAGATTGGACCAGACCAAGGGTTGTGACAGCAGGATTGACAGCACACAGAGGG
256 CATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGCGACAACAAGATCGACAGCACACAG-GGG
* * * * *
13497404 G-ACC-AGGTCGATCCCCAACTTGCTCGTTCTGCCTCTCCGGTCAG-CTGAGCGCCCGCACGCTC
320 GCACCGA-GTCGATCCCCAACTTGCGCATTCTACCTCTCC-GACAGTCTGAGCGCCCGCACACTC
*
13497466 GTTTCATGGGTTGGCTTAGGCATACAGAGTTTATTCCATGTCTAAG
383 GTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
13497512 CATGCGAAGT
Statistics
Matches: 359, Mismatches: 61, Indels: 17
0.82 0.14 0.04
Matches are distributed among these distances:
484 7 0.02
485 148 0.41
486 197 0.55
487 7 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (485 bp):
GGGGGATCGGGGCGATCCCCGGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCC
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGATGA
TTGTGGCAGCAGGACCGATAGCACGCAGAAGGGGACCGGGCCGATCCCAGCTTGCGCATTAGGCC
TCTCCGGCTGGCTCAACACCCGAACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
CCAATCTAAGATCAGACCAGACCAAGGGTTGCGACAACAAGATCGACAGCACACAGGGGGCACCG
AGTCGATCCCCAACTTGCGCATTCTACCTCTCCGACAGTCTGAGCGCCCGCACACTCGTTTCATG
GGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGATCAGATCAGACTGAGGGTAGCGGTAG
CAGGAACAGTAGTAGGATTGGCAGCATGTA
Found at i:13497714 original size:26 final size:26
Alignment explanation
Indices: 13497680--13497734 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
13497670 GGGTTGACTA
13497680 AAGCATATGGAGTTCATCCCCAGTCT
1 AAGCATATGGAGTTCATCCCCAGTCT
*
13497706 AAGCATATGGAGTTCATTCCCAGTCT
1 AAGCATATGGAGTTCATCCCCAGTCT
13497732 AAG
1 AAG
13497735 ATCAGACCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
AAGCATATGGAGTTCATCCCCAGTCT
Found at i:13497801 original size:197 final size:196
Alignment explanation
Indices: 13497453--13497946 Score: 563
Period size: 197 Copynumber: 2.5 Consensus size: 196
13497443 GTCAGCTGAG
* * * * *
13497453 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTTAT-TCCATGTCTAAGCAT-G
1 CGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCA-GTCTAAGCATAG
* * * * **
13497516 CGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGTAGGATCGGCAACACA
65 -G-AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGTAGGACCAACAACACA
* * * * *
13497581 CAGGAGGGACCGAATCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCCTTTTCGATCGAT
128 CAGGAGGGACCGAATCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCCTCTCCGACCGAT
13497646 TGAA
193 TGAA
* * *
13497650 CGCCCGCACGCTCCTTTCATGGGTTGACTAAAGCATATGGAGTTCATCCCCAGTCTAAGCATATG
1 CGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATA-G
* * * *
13497715 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGAGTTACGGTAGTAGGACCAACAACACGCA
65 GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGTAGGACCAACAACACACA
* ** * * *
13497780 GGGGGGATTGGATCAATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCCTCTCCGACCGATTG
130 GGAGGGACCGAATCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCCTCTCCGACCGATTG
*
13497845 AG
195 AA
** * * *
13497847 CATCCGTACACTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCT-A-C--A-G
1 CGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATAGG
*
13497907 AGTTCATTCCCTA-TCTAATATCAGACCAGATCGAGGGTTA
66 AGTTCATTCCC-AGTCTAAGATCAGACCAGATCGAGGGTTA
13497947 TGACAGCAGG
Statistics
Matches: 252, Mismatches: 41, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
191 36 0.14
192 1 0.00
193 1 0.00
195 1 0.00
196 1 0.00
197 207 0.82
198 4 0.02
199 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (196 bp):
CGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATAGG
AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGTAGGACCAACAACACACAG
GAGGGACCGAATCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCCTCTCCGACCGATTGA
A
Found at i:13498403 original size:26 final size:26
Alignment explanation
Indices: 13498373--13498425 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13498363 GTTGGCTTAG
* *
13498373 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTCCATTCCCA-GTCTAA
13498399 GCATACGAAGTCCATTCCCAGTCTAA
1 GCATACGAAGTCCATTCCCAGTCTAA
13498425 G
1 G
13498426 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTCCATTCCCAGTCTAA
Found at i:13499050 original size:11 final size:11
Alignment explanation
Indices: 13499034--13499059 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
13499024 CCCGGGGCAC
13499034 CATCGTCGGAG
1 CATCGTCGGAG
13499045 CATCGTCGGAG
1 CATCGTCGGAG
13499056 CATC
1 CATC
13499060 ACCGGAGAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:13499678 original size:26 final size:26
Alignment explanation
Indices: 13499648--13499700 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13499638 GTTGACTTAG
13499648 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
** *
13499674 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13499700 G
1 G
13499701 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13501241 original size:26 final size:26
Alignment explanation
Indices: 13501198--13501248 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13501188 TGACTTAGGA
*
13501198 ATACGGAGTTAATCCCCAGTCTAAGC
1 ATACGGAGTTAATCCCCAATCTAAGC
* *
13501224 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTAATCCCCAATCTAAG
13501249 ATTGAATCGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTAATCCCCAATCTAAGC
Found at i:13501527 original size:159 final size:158
Alignment explanation
Indices: 13501273--13501714 Score: 405
Period size: 159 Copynumber: 2.8 Consensus size: 158
13501263 AGTGTTGCGA
* * * * * *
13501273 CAGTAGGATTGACAGCACGCAGGGGGGATCAGGTCGATCCTCGGCTTATGCATTCTGCCTCTCTG
1 CAGTAGGACTGACAGCACGCAGGGGGGACCAGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCG
*
13501338 GCCGACTGAACGCCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGT
66 ACCGACTGAACGCCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCCA-GT
13501402 CTAAACCCTAGTCGGACCGAGGGTTGTGG
130 CTAAACCCTAGTCGGACCGAGGGTTGTGG
* * * * *
13501431 CAGTAGGACTGACAGCACGTAGAGGGGTACCGGGTCGATCCCCAGCTTGCGCATTTTGCCTCTCC
1 CAGTAGGACTGACAGCACGCAG-GGGGGACCAGGTCGATCCCCAGCTTACGCATTCTGCCTCTCC
* ** *
13501496 GACCGGCTGAGTGCCCGCACG-CTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCCAG
65 GACCGACTGAACGCCCGCACGCCT-GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCCAG
* * * * *
13501560 TCTAAGA-TC-AGACCAGACCGAGGGTTGCGT
129 TCTAA-ACCCTAG-TCGGACCGAGGGTTGTGG
* * * * * * * *
13501590 TAGCAAGA-TCGATAGCACGCAGGGGGGATC-GGACCAGTCCCC-GACTTGCGCATTCTGCCTCT
1 CAGTAGGACT-GACAGCACGCAGGGGGGACCAGGTCGA-TCCCCAG-CTTACGCATTCTGCCTCT
* * * * ** * * *
13501652 TCGATCGACTGAGCGCTCATACG-CTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCC
63 CCGACCGACTGAACGCCCGCACGCCT-GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCC
13501715 ATGCCTAAGC
Statistics
Matches: 235, Mismatches: 41, Indels: 16
0.80 0.14 0.05
Matches are distributed among these distances:
157 5 0.02
158 106 0.45
159 120 0.51
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CAGTAGGACTGACAGCACGCAGGGGGGACCAGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCG
ACCGACTGAACGCCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTC
TAAACCCTAGTCGGACCGAGGGTTGTGG
Found at i:13501923 original size:26 final size:26
Alignment explanation
Indices: 13501893--13501945 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13501883 GTTAGCTTAG
*
13501893 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13501919 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13501945 G
1 G
13501946 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13501975 original size:196 final size:197
Alignment explanation
Indices: 13501627--13502117 Score: 628
Period size: 196 Copynumber: 2.5 Consensus size: 197
13501617 ATCGGACCAG
* * * * * ** * * *
13501627 TCCCCGACTTGCGCATTCTGCCTCTTCGATC-GACTGAGCGCTCATACGCTCGTTTCGTGGGTTG
1 TCCCCGACTTGCGCATTCTACCTCTTCGACCAGTC-GAGCACCCGCACACCCGTTTCATGGGTTG
* *
13501691 GCTTAGGCATACGAAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
65 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* *
13501756 CCAGACTGAGGGTTGCAGTAGCAGGACCAGCAGCAGGATCGACAGCACGTAAGAGG-GG-TCAGG
130 CCAGACTGAGAGTTGCAGTAGCAGGACCAGCAACAGGATCGACAGCACGTAAG-GGAGGATCAGG
13501819 CCGA
194 CCGA
* * * *
13501823 TCCCTGGCTTGCGCATTCTACCTCTTCGATCAGTCGAGCACCCGCACACCCGTTTCATGGGTTAG
1 TCCCCGACTTGCGCATTCTACCTCTTCGACCAGTCGAGCACCCGCACACCCGTTTCATGGGTTGG
* * *
13501888 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
66 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
** ** * * *
13501953 TGGACTGAGAGTTGTGGTAGCAGGACCAGTAACAGGATCGACAGCACGTAAGGGAGGATCGGGCT
131 CAGACTGAGAGTTGCAGTAGCAGGACCAGCAACAGGATCGACAGCACGTAAGGGAGGATCAGGCC
13502018 GA
196 GA
* * * * * * *
13502020 TCCCCGACTTGCTCATTCTGCCTCTTCGGCCAGTTGAGCACCCGCACGCTCATTTCATGGGTTGG
1 TCCCCGACTTGCGCATTCTACCTCTTCGACCAGTCGAGCACCCGCACACCCGTTTCATGGGTTGG
13502085 CTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 CTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13502118 CCCAGCCAGA
Statistics
Matches: 254, Mismatches: 38, Indels: 5
0.86 0.13 0.02
Matches are distributed among these distances:
195 2 0.01
196 157 0.62
197 95 0.37
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.25
Consensus pattern (197 bp):
TCCCCGACTTGCGCATTCTACCTCTTCGACCAGTCGAGCACCCGCACACCCGTTTCATGGGTTGG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACTGAGAGTTGCAGTAGCAGGACCAGCAACAGGATCGACAGCACGTAAGGGAGGATCAGGCC
GA
Found at i:13502304 original size:26 final size:26
Alignment explanation
Indices: 13502274--13502326 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13502264 GTTGACTTAG
13502274 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
13502300 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
13502326 G
1 G
13502327 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:13502657 original size:26 final size:26
Alignment explanation
Indices: 13502621--13502670 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
13502611 GAGTTAGGCA
13502621 TACGGAGTTCATTCCCAA-TCTAAGCC
1 TACGGAGTTCATT-CCAAGTCTAAGCC
13502647 TACGGAGTTCATTCCAAGTCTAAG
1 TACGGAGTTCATTCCAAGTCTAAG
13502671 ACGAGACAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCAAGTCTAAGCC
Found at i:13502839 original size:26 final size:26
Alignment explanation
Indices: 13502803--13502855 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13502793 GTTAGCTTAG
13502803 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
13502829 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13502855 G
1 G
13502856 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13503573 original size:26 final size:26
Alignment explanation
Indices: 13503524--13503576 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13503514 GTTGACTTAG
*
13503524 GCATACAGAGTTCATCCATGGTCTAA
1 GCATACAGAGTTCATCCATAGTCTAA
*
13503550 GCATACGGAGTTCATTCC-TAGTCTAA
1 GCATACAGAGTTCA-TCCATAGTCTAA
13503576 G
1 G
13503577 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCATAGTCTAA
Found at i:13504075 original size:26 final size:26
Alignment explanation
Indices: 13504025--13504075 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13504015 GTTGGCTTAG
*
13504025 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
* *
13504051 GCATACGGAGTTCATTCCCTATCTA
1 GCATACAGAGTTCATTCCATATCTA
13504076 TGATCAGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:13504412 original size:26 final size:26
Alignment explanation
Indices: 13504382--13504434 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13504372 GTTTACTTAG
13504382 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13504408 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13504434 G
1 G
13504435 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13504743 original size:342 final size:339
Alignment explanation
Indices: 13503975--13505475 Score: 1209
Period size: 355 Copynumber: 4.3 Consensus size: 339
13503965 GCACATTCTA
* * * * *
13503975 CCTCTTCGGTTGGCTGAGCGCCGGCACGCTCGTTTCGTGTGTTGGCTTAGGCATACAGAGTTCAT
1 CCTCTTCGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
13504040 -TCCATGTCTAAGCATACGGAGTTCATTCCCTA-TCTATGATCAGACCAGACCGAGGGTTACGAC
66 CCCCA-GTCTAAGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCGGACTGAGGGTT--G-C
* * *
13504103 AGTAATACCAGCAGCAGGATCGGTAGCACGCAGGAGGGGACCGGGCCGAT-CCTCGACTTGCGCA
126 -G----A-CA--A-CAGGATCGATAGCACGCA-GA-GGGATCGGG-CGATCCCT-GGCTTGCGCA
* ** * * * * * * * * * *
13504167 TTCTACCTCTCTAGTCGACTGAGCGCCTGTACGCTCGTTTCATGGGTTTGCTTAGGCATACGAAG
178 TTCTGCCTCTCCGGCCGACTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAG
* * *
13504232 TTCATTCCATGTCTAA-GCCCCAGCCGGATCGAGGGTTGTGGCAGC---A-CG-CAG-----AG-
243 TTCATTCCATGTCTAAGGCCCC--CCGGACCAAGGGTTGTGGTAGCGGGACCGACAGCACATAGA
* * *
13504285 -GGGGACTGGGCTGATGCC-CGGCTTACGCATTATGCCTG
306 AGGGGA-TCGGCCGAT-CCTCGACTTACGCATTA----TG
* * * * *
13504323 TCCAGCTAGCCTCTCCGGCCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTTACTTAGGCATAC
1 --C--CT---CT-T-CGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
13504388 GGAGTTCATCCCCAGTCTAAGCATACGTAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
57 GGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
* * * *
13504453 TTGCGACAGCAGGATCGATAGCACGCAGAGGGAACTGGGCTGATCCCCGGCTTACGCATTCTGCC
122 TTGCGACAACAGGATCGATAGCACGCAGAGGGATC-GGGC-GATCCCTGGCTTGCGCATTCTGCC
* * *
13504518 TCTCCGGCCGACTGAGTGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAG-TCATTT
185 TCTCCGGCCGACTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTC
*
13504582 CATGTCTAAGGTCCCCCCGGACCAAGGGTTGTGGTAGCGGGACCGACAGCACGTAGAAGGGGATC
250 CATGTCTAAGG-CCCCCCGGACCAAGGGTTGTGGTAGCGGGACCGACAGCACATAGAAGGGGATC
* * **
13504647 GGACCGATCCCCGGCTTTTGCATTATG
314 GG-CCGATCCTCGACTTACGCATTATG
* * *
13504674 CCTCTTCGGCTGGCTCAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGAT
1 CCTCTTCGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* *
13504739 CCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACTGGA-TCGAGGGTTGCGACA
66 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGACA
* * * *
13504803 ATAGGATCGGTAGCACGCAGAGGGGATCAGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGT
130 ACAGGATCGATAGCACGCAGA-GGGATC-GGGCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGC
** * * *
13504868 CGGTTGAGTGCTCGCACGCCCATTTCGTTGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTA
193 CGACTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
*
13504933 A-GCCCCAACCGGACTGAA-GGTTGTGGTAGCAGGACTGACAGCGGGATCGACAGCACATA-AAG
258 AGGCCCC--CCGGAC-CAAGGGTTGTGGTAGC-GG---G--A-C-----CGACAGCACATAGAA-
* * * *
13504995 GGGGACCGGGCTGATCCTCGACTTACGTACTATG
307 GGGGATC-GGCCGATCCTCGACTTACGCATTATG
* * * *
13505029 CCTCTTCGG-TCGGCTGAGCGCCTGTACGCTCGTTTCGTGGGTTGACTTAAGCATAAGGAGTTCA
1 CCTCTTCGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * * ** * * * *
13505093 TCTCTAGTCTAAGCTTACAGAGTTCATTCCCAATCTAAGATTGGACCAGACCGAGGGTTGTGGCA
65 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACA
* * * * * *
13505158 ACAGGATTGACAGCACACAGGAAGGATCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCTGGC
130 ACAGGATCGATAGCACGCA-GAGGGATCGGG-CGATCCCTGGCTTGCGCATTCTGCCTCTCCGGC
* * *
13505223 C-AGCAGAGCGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
193 CGA-CTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
*** ** ** *
13505287 AAGCGCCAGTC-GACTGAGGGTTGTGGTAGCGGGACCGGTAGCACATAGAGGGGGGATCAGGCC-
257 AAG-GCCCCCCGGACCAAGGGTTGTGGTAGCGGGACCGACAGCACATAGA-AGGGGATC-GGCCG
* *
13505350 ATTCCTCGACTTGCGCATTCTG
319 A-TCCTCGACTTACGCATTATG
* * ** * * *
13505372 CCTCTTCGACCGATTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGTCATACGGAGTTCAT
1 CCTCTTCGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* **
13505437 TCCTTGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
66 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
13505476 GTTTGAGCCA
Statistics
Matches: 941, Mismatches: 150, Indels: 127
0.77 0.12 0.10
Matches are distributed among these distances:
341 5 0.01
342 212 0.23
343 192 0.20
344 75 0.08
345 23 0.02
346 1 0.00
347 6 0.01
348 6 0.01
349 3 0.00
350 3 0.00
351 2 0.00
352 2 0.00
353 6 0.01
354 26 0.03
355 271 0.29
356 6 0.01
357 99 0.11
358 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (339 bp):
CCTCTTCGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAA
CAGGATCGATAGCACGCAGAGGGATCGGGCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGA
CTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGG
CCCCCCGGACCAAGGGTTGTGGTAGCGGGACCGACAGCACATAGAAGGGGATCGGCCGATCCTCG
ACTTACGCATTATG
Found at i:13504760 original size:26 final size:26
Alignment explanation
Indices: 13504724--13504776 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13504714 GTTGACTTAG
* *
13504724 GCATACGGAGTTGATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
*
13504750 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
13504776 G
1 G
13504777 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:13505459 original size:26 final size:26
Alignment explanation
Indices: 13505423--13505474 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13505413 TTGGCTTAGT
**
13505423 CATACGGAGTTCATTCCTTGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
13505449 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
13505475 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:13505968 original size:26 final size:26
Alignment explanation
Indices: 13505938--13505990 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13505928 GTTGAATTAG
13505938 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
13505964 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13505990 G
1 G
13505991 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13506488 original size:26 final size:26
Alignment explanation
Indices: 13506439--13506491 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13506429 GTTGGCTTAG
* **
13506439 GCATACAGAGTTCATTTCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
13506465 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13506491 G
1 G
13506492 ATTGCACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13507028 original size:26 final size:26
Alignment explanation
Indices: 13506988--13507043 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
13506978 TGGGTTGGCT
**
13506988 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACAAAGTTCATTCCCA-GTC
13507014 TAAGCATACAAAGTTCATTCCCAGTC
1 TAAGCATACAAAGTTCATTCCCAGTC
13507040 TAAG
1 TAAG
13507044 AGTTTGAGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACAAAGTTCATTCCCAGTC
Found at i:13508035 original size:159 final size:157
Alignment explanation
Indices: 13507796--13508243 Score: 463
Period size: 159 Copynumber: 2.8 Consensus size: 157
13507786 TTGCAACAGT
* * * *
13507796 AGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGTTTACGCATTCTGCCTCTCCGGCCG
1 AGGATCGACAGCACGCA-GGGGGACCGGGTCGATCCCCGGCTTATGCATTCTGCCTCTCCGGCCG
* ** * * * *
13507861 ACTGAGCGCTAGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
65 GCTGAGCGCCCGCACGCACATTTCGTGGGTTGGCTTAGGCATACGGATTTCATTCCATGTCTAAG
* * *
13507926 CCCCCG-CCGGACCGAGGGTTG-TCGTAGT
130 CACCCGACCGGACCGA-GGTTGCT-GCAGC
* * *
13507954 GGGATCGACAGCACACAGAAGGGGACCGGGTCGATCCCCGGCTTATGCATTATGCCTCTCCGGCC
1 AGGATCGACAGCACGCAG--GGGGACCGGGTCGATCCCCGGCTTATGCATTCTGCCTCTCCGGCC
* * * * *
13508019 GGCTTAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGATTTCATTCCCA-GTCTA
64 GGCTGAGCGCCCGCACGCACATTTCGTGGGTTGGCTTAGGCATACGGATTTCATT-CCATGTCTA
* * *
13508083 AG-ATCGGACCGGACTGAGGTTGCTGCAGC
128 AGCACCCGACCGGACCGAGGTTGCTGCAGC
* * * * * * * *
13508112 AGGATCGACAGCACGCAGGGGAGATCAGGTCGATCCTCGACTTGTGCATTCTCCCTCTCTGGCTG
1 AGGATCGACAGCACGCAGGGG-GACCGGGTCGATCCCCGGCTTATGCATTCTGCCTCTCCGGCCG
* ** * *
13508177 GCTGAGCACCCGCACGCATGTTTTGTGGGTTGGCTTAGGCATACGGATTTGATTCCATGTCTAAG
65 GCTGAGCGCCCGCACGCACATTTCGTGGGTTGGCTTAGGCATACGGATTTCATTCCATGTCTAAG
13508242 CA
130 CA
13508244 TACGGAGTTC
Statistics
Matches: 238, Mismatches: 44, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
156 6 0.03
157 86 0.36
158 42 0.18
159 101 0.42
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
AGGATCGACAGCACGCAGGGGGACCGGGTCGATCCCCGGCTTATGCATTCTGCCTCTCCGGCCGG
CTGAGCGCCCGCACGCACATTTCGTGGGTTGGCTTAGGCATACGGATTTCATTCCATGTCTAAGC
ACCCGACCGGACCGAGGTTGCTGCAGC
Found at i:13508208 original size:157 final size:157
Alignment explanation
Indices: 13507741--13508241 Score: 397
Period size: 159 Copynumber: 3.2 Consensus size: 157
13507731 CCCAGTCAAA
* * * * ** *
13507741 GCATACAGAGTTCATTTCCA-GTCTAAGATTGGACTGGA-TCGATGGTTGCAACAGTAGGATCGA
1 GCATACGGATTTCA-TTCCATGTCTAAGATCGGACCGGACT-GA-GGTTGCTGCAGCAGGATCGA
* * * ** * * * * *
13507804 CAGCACGCAGGGGGGACC-GAGCCGATCCCCGGTTTACGCATTCTGCCTCTCCGGCCGACTGAGC
63 CAGCACACAGAGGGGACCAG-GTCGATCCCCGACTTATGCATTATCCCTCTCCGGCCGGCTGAAC
* ** * * *
13507868 GCTAGCACGCCCATTTCATGGGTTGGCTTAG
127 ACCCGCACGCTCATTTCGTGGGTTGACTTAG
* * ** * * * **
13507899 GCATAGGGAGTTCATTCCATGTCTAAGCCCCCG-CCGGACCGAGGGTTG-TCGTAGTGGGATCGA
1 GCATACGGATTTCATTCCATGTCTAAG-ATCGGACCGGACTGA-GGTTGCT-GCAGCAGGATCGA
* * * *
13507962 CAGCACACAGAAGGGGACCGGGTCGATCCCCGGCTTATGCATTATGCCTCTCCGGCCGGCTTAAC
63 CAGCACACAG-AGGGGACCAGGTCGATCCCCGACTTATGCATTATCCCTCTCCGGCCGGCTGAAC
*
13508027 GCCCGCACGCTCATTTCGTGGGTTGACTTAG
127 ACCCGCACGCTCATTTCGTGGGTTGACTTAG
*
13508058 GCATATGGATTTCATTCCCA-GTCTAAGATCGGACCGGACTGAGGTTGCTGCAGCAGGATCGACA
1 GCATACGGATTTCATT-CCATGTCTAAGATCGGACCGGACTGAGGTTGCTGCAGCAGGATCGACA
* * * * * * * *
13508122 GCACGCAG-GGGAGATCAGGTCGATCCTCGACTTGTGCATTCTCCCTCTCTGGCTGGCTGAGCAC
65 GCACACAGAGGG-GACCAGGTCGATCCCCGACTTATGCATTATCCCTCTCCGGCCGGCTGAACAC
* * *
13508186 CCGCACGCAT-GTTTTGTGGGTTGGCTTAG
129 CCGCACGC-TCATTTCGTGGGTTGACTTAG
*
13508215 GCATACGGATTTGATTCCATGTCTAAG
1 GCATACGGATTTCATTCCATGTCTAAG
13508242 CATACGGAGT
Statistics
Matches: 277, Mismatches: 54, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
156 6 0.02
157 90 0.32
158 76 0.27
159 101 0.36
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGATTTCATTCCATGTCTAAGATCGGACCGGACTGAGGTTGCTGCAGCAGGATCGACAG
CACACAGAGGGGACCAGGTCGATCCCCGACTTATGCATTATCCCTCTCCGGCCGGCTGAACACCC
GCACGCTCATTTCGTGGGTTGACTTAG
Found at i:13508244 original size:26 final size:26
Alignment explanation
Indices: 13508215--13508267 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13508205 GTTGGCTTAG
* *
13508215 GCATACGGATTTGATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
13508241 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGGAGTTCATTCCATGTCTAA
13508267 G
1 G
13508268 ATTGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:13508426 original size:185 final size:184
Alignment explanation
Indices: 13508058--13508611 Score: 631
Period size: 185 Copynumber: 3.0 Consensus size: 184
13508048 GTTGACTTAG
* *
13508058 GCATATGGATTTCATTCCCA-GTCTAAGATCGGACCGGACTG-AGGTTGCTG-CAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACTGAAGGTTGC-GACAGCAGGATCGA
* * * * * *
13508120 CAGCACGCAGGGGAGATCAGGTCGATCCTCGACTTGTGCATTCTCCCTCTCTG-GCTGGCTGAGC
64 CAGCACGCAGGGGGGATCGGGTCGATCCTCGACTTGTGCATTCTGCCTCTCCGATC-GACTGAGC
* * *
13508184 ACCCGCACGCAT-GTTTTGTGGGTTGGCTTAGGCATACGGATTTGATTCCATGTCTAA
128 ACCCGCACGC-TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
13508241 GCATACGGAGTTCATTCCATGTGTAAGATTGGACCGAACCGAAGGTTGCGACAGCAGGA-CCAGC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACTGAAGGTTGCGACAGCAGGATCGA-C
* *
13508305 AGCACGTCAGGGGGGACCGGGTCGATTCC-CGACTTATGCATTCTGCCTCTCCGATCGACTGAGC
65 AGCACG-CAGGGGGGATCGGGTCGA-TCCTCGACTTGTGCATTCTGCCTCTCCGATCGACTGAGC
* * *
13508369 ACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA-TCCTTAGTCTAA
128 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAA
** * * *
13508426 GCATACGGAGTTCATTCC-TGGTCTAAGATCAAACTGGACTGAGGGTTGCGATAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGGACCGGACTGAAGGTTGCGACAGCAGGATCGAC
* * * * *
13508490 AGCACGCATGGGGGATCGAGCCGATCCTCGACTTGGGCATTCTGCCTCTCCGATCGACTGAGCGC
65 AGCACGCAGGGGGGATCGGGTCGATCCTCGACTTGTGCATTCTGCCTCTCCGATCGACTGAGCAC
* * *** *
13508555 CCGCACGCCCATTTCGTATTTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
13508610 GC
1 GC
13508612 CCCAGCCGGA
Statistics
Matches: 311, Mismatches: 47, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
182 3 0.01
183 37 0.12
184 119 0.38
185 146 0.47
186 6 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACTGAAGGTTGCGACAGCAGGATCGACA
GCACGCAGGGGGGATCGGGTCGATCCTCGACTTGTGCATTCTGCCTCTCCGATCGACTGAGCACC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:13508885 original size:158 final size:157
Alignment explanation
Indices: 13508466--13508928 Score: 500
Period size: 158 Copynumber: 2.9 Consensus size: 157
13508456 AAACTGGACT
* * *
13508466 GAGGGTTGCGATAGCAGGATCGACAGCACGCATGGGGGA-TCGAGCCGATCCTCGACTTGGGCAT
1 GAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGACT-GAGCCGATCCCCGACTTGCGCAT
* * ***
13508530 TCTGCCTCTCCGATCGACTGAGCGCCCGCACGCCCATTTCGTATTTTGGCTTAGGCATAAGGAGT
65 TCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAA-GAGT
* *
13508595 TCATTCCATGTCTAAGCCCCAGCCGGATC
129 TCATTCCATGTCTAAGCCCCAGCCAGACC
* ** ** * * ** *
13508624 GAGGGTTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGACCGAGTTGATCCCCGGCTTGCGCAT
1 GAGGGTTGCGATAGCAGGATCGACAGCACGCAG-GGGGGACTGAGCCGATCCCCGACTTGCGCAT
* * * * ** * * * *
13508689 TATGCCTCTCCGACCGGCTCAGTGCGTGAATGCTCATTTCGTGGGTTGACTTAGGCATACAGACT
65 TCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA-AGAGT
** *
13508754 TCATTACCA-GTCTAAG-ATCGGACCAGACC
129 TCATT-CCATGTCTAAGCCCCAG-CCAGACC
* * * *
13508783 GAGGGTTGCGATAGCAGGATCGACAGGATGCAGGGGGGACTGGGCCGATCCCCAACTTGCGCATT
1 GAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGACTGAGCCGATCCCCGACTTGCGCATT
*
13508848 CTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCATAGGCATATAGAGTT
66 CTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA-AGAGTT
13508913 CATTCCATGTCTAAGC
130 CATTCCATGTCTAAGC
13508929 ATATGGAGTT
Statistics
Matches: 239, Mismatches: 59, Indels: 13
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.01
158 118 0.49
159 114 0.48
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGACTGAGCCGATCCCCGACTTGCGCATT
CTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAAGAGTTC
ATTCCATGTCTAAGCCCCAGCCAGACC
Found at i:13508937 original size:26 final size:26
Alignment explanation
Indices: 13508901--13508953 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13508891 GTTGGCATAG
13508901 GCATATAGAGTTCATT-CCATGTCTAA
1 GCATATAGAGTTCATTCCCA-GTCTAA
*
13508927 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
13508953 G
1 G
13508954 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:13509150 original size:196 final size:195
Alignment explanation
Indices: 13508798--13509516 Score: 769
Period size: 196 Copynumber: 3.7 Consensus size: 195
13508788 TTGCGATAGC
* * * *
13508798 AGGATCGACAGGATGCAGGGGGGA-CTGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGACC
1 AGGATCGACAGCACGCAGGGGGGATC-GGGTCGATCCCCGACTTGCGCATTCTGCCTCTCC-ACC
* * * * **
13508862 GACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCATAGGCATATAGAGTTCATTCCATGTCTAA
64 GGCTAAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
** *
13508927 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGACCAGTA
129 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGCAGGACCAGCA
13508992 GA
194 GA
* * *
13508994 AGGATCAACAGCATGCAGGGGGGCTCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCTACCG
1 AGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCC-ACCG
** * * * * *
13509059 GCTAAATGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAG
65 GCTAAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * *
13509124 CATACGGAATTCATTCCCAATCTAAGATCGGA-CTGGACCGAGGGTTGCGACAGCAGGACCAGCA
130 CATATGGAGTTCATTCCCAGTCTAAGATCGGATC-GGATCGAGGGTTGCGACAGCAGGACCAGCA
13509188 -A
194 GA
* ** * * * * * *
13509189 CAGGATTGGTAGCACGTAAGGGGGATCGGGTTGATCCCCGACTTTCGTATTCTGCCTTTCCAGCC
1 -AGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCA-CC
* * * * *
13509254 GGCTAAGTGCCCGTACACTCATTTTGTGGGTTGGTTTAGGCATATGGAGTTCATTCCATGTCTAA
64 GGCTAAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
13509319 GCATATAGAGTTCATTCCCAGTCTAGGATCAGATCGGATCGAGGGTTGCGACAGTAGGACCAACA
129 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGCAGGACCAGCA
*
13509384 GT
194 GA
* ** * * * * * * * *
13509386 AGGATTGGTAGCACACCGGGGGGATCGAGTCGATCCTCGGCTTTCGTATTCTGCCTCTCCAACCA
1 AGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCC-ACCG
* * * * ** *
13509451 GCTGAGCGCCCGCACACTCGTTTCGTAGGTTGGTTTAGGCATACGGAGTTTGTTCCATCTCTAAG
65 GCTAAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
13509516 C
130 C
13509517 CCCAGTCGGA
Statistics
Matches: 440, Mismatches: 76, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
195 3 0.01
196 434 0.99
197 3 0.01
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (195 bp):
AGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCACCGG
CTAAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGCAGGACCAGCAGA
Found at i:13509178 original size:685 final size:676
Alignment explanation
Indices: 13507686--13509170 Score: 1632
Period size: 685 Copynumber: 2.2 Consensus size: 676
13507676 AGCTGAGCGT
* * * ** * * *
13507686 CCGCACGCTCGTTTCATGGGTTGACTTAGGCTTATGGAGTTCATCCCCAGTCAAAGCATACAGAG
1 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-CTTAGTCTAAGCATACGGAA
* * *** * *
13507751 TTCATTTCCAGTCTAAGATTGGACTGGATCGATGGTTGCAACAGTAGGATCGACAGCACGCAGGG
65 TTCATTCCCAATCTAAGATCAAACTGGACCGAGGGTT------GTA-GA-CGACAGCACGCAGGG
** * *
13507816 GGGACCGAGCCGATCCCCGGTTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCTAGCACGCCCA
122 GGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCAGCACGCCCA
* * *
13507881 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCCGCCGGACCGAGGGTT
187 TTTCATAGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
* * * *
13507946 GTCGTAGTGGGATCGACAGCACACAGAAGGGGACCGGGTCGATCCCCGGCTTATGCATTATGCCT
252 GTCGCAGTGGGACCGACAGCACACAGAAGGGGACCGAGTCGATCCCCGGCTTACGCATTATGCCT
* * * ** * *
13508011 CTCCGGCCGGCTTAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGATTTCATTCC
317 CTCCGACCGGCTCAACGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACAGACTTCATTAC
* *
13508076 CAGTCTAAGATCGGACCGGACTGAGGTTGCTGCAGCAGGATCGACAGCACGCAGGGGAGATCAGG
382 CAGTCTAAGATCGGACCAGACCGAGGTTGCTGCAGCAGGATCGACAGCACGCAGGGGAGATCAGG
* * * * * * * * * *
13508141 TCGATCCTCGACTTGTGCATTCTCCCTCTCTGGCTGGCTGAGCACCCGCACGCATGTTTTGTGGG
447 CCGATCCCCAACTTGCGCATTCTCCCTCTCCGACCGACTGAGCACCCGCACGCATATTTCGTGGG
* * * * * *
13508206 TTGGCTTAGGCATACGGATTTGATTCCATGTCTAAGCATACGGAGTTCATTCCATGTGTAAGATT
512 TTGGCATAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCATGTCTAAGATC
* *
13508271 GGACCGAACCGAAGGTTGCGACAGCAGGACCAGCAGCACGTCAGGGGGGACCGGGTCGATTCCCG
577 GGACCGAACCGAAGGTTGCGACAGCAGGACCAGAAGCACGTCAGGGGGGACCGGGTCGATCCCCG
* * * *
13508336 ACTTATGCATTCTGCCTCTCCGATCGACTGAGCAC
642 ACTTACGCATTCTGCCTCTCCGACCGACTAAACAC
* *
13508371 CCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCTTAGTCTAAGCATACGGAG
1 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-CTTAGTCTAAGCATACGGAA
*** * *
13508436 TTCATTCCTGGTCTAAGATCAAACTGGACTGAGGGTTGCGATAGCAGGATCGACAGCACGCATGG
65 TTCATTCCCAATCTAAGATCAAACTGGACCGAGGGTT--G-T---A-GA-CGACAGCACGCAGGG
* * ** * *
13508501 GGGATCGAGCCGATCCTCGACTTGGGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCCCA
122 GGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCAGCACGCCCA
* ** *
13508566 TTTCGTATTTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTT
187 TTTCATAGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
* * * * *
13508631 GTGGCAGTGGGACCGACAGCACGCAGAGGGGGACCGAGTTGATCCCCGGCTTGCGCATTATGCCT
252 GTCGCAGTGGGACCGACAGCACACAGAAGGGGACCGAGTCGATCCCCGGCTTACGCATTATGCCT
** ** *
13508696 CTCCGACCGGCTCAGTGCGTGAATGCTCATTTCGTGGGTTGACTTAGGCATACAGACTTCATTAC
317 CTCCGACCGGCTCAACGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACAGACTTCATTAC
* * * *
13508761 CAGTCTAAGATCGGACCAGACCGAGGGTTGC-GATAGCAGGATCGACAGGATGCAGGGGGGA-CT
382 CAGTCTAAGATCGGACCAGACCGA-GGTTGCTG-CAGCAGGATCGACAGCACGCAGGGGAGATC-
* * *
13508824 GGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGC-TCATTTCG
444 AGGCCGATCCCCAACTTGCGCATTCTCCCTCTCCGACCGACTGAGCACCCGCACGCAT-ATTTCG
* *
13508888 TGGGTTGGCATAGGCATATAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCA-GTCTA
508 TGGGTTGGCATAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT-CCATGTCTA
* * * * **
13508952 AGATCGGATCGGATCGAGGGTTGCGGTAGCAGGACCAGTAGAAGGATCAACAGCATGCAGGGGGG
572 AGATCGGACCGAACCGAAGGTTGCGACAGCAGGACC---AGAA-G--C-AC-G--T-CAGGGGGG
* * * **
13509017 -CTCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCTACCGGCTAAATGC
626 AC-CGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGACTAAACAC
*
13509068 CTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TTCATGTCTAAGCATACGGA
1 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCTT-A-GTCTAAGCATACGGA
**
13509132 ATTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTG
64 ATTCATTCCCAATCTAAGATCAAACTGGACCGAGGGTTG
13509171 CGACAGCAGG
Statistics
Matches: 666, Mismatches: 111, Indels: 36
0.82 0.14 0.04
Matches are distributed among these distances:
681 1 0.00
682 1 0.00
685 351 0.53
686 161 0.24
687 3 0.00
689 3 0.00
690 1 0.00
692 1 0.00
693 2 0.00
694 1 0.00
695 3 0.00
696 3 0.00
697 135 0.20
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (676 bp):
CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCTTAGTCTAAGCATACGGAAT
TCATTCCCAATCTAAGATCAAACTGGACCGAGGGTTGTAGACGACAGCACGCAGGGGGGACCGAG
CCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCAGCACGCCCATTTCATAGG
TTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTCGCAGTG
GGACCGACAGCACACAGAAGGGGACCGAGTCGATCCCCGGCTTACGCATTATGCCTCTCCGACCG
GCTCAACGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACAGACTTCATTACCAGTCTAAG
ATCGGACCAGACCGAGGTTGCTGCAGCAGGATCGACAGCACGCAGGGGAGATCAGGCCGATCCCC
AACTTGCGCATTCTCCCTCTCCGACCGACTGAGCACCCGCACGCATATTTCGTGGGTTGGCATAG
GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCATGTCTAAGATCGGACCGAAC
CGAAGGTTGCGACAGCAGGACCAGAAGCACGTCAGGGGGGACCGGGTCGATCCCCGACTTACGCA
TTCTGCCTCTCCGACCGACTAAACAC
Found at i:13509702 original size:26 final size:26
Alignment explanation
Indices: 13509673--13509725 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13509663 GTTGACTTAG
13509673 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13509699 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13509725 G
1 G
13509726 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13510204 original size:26 final size:26
Alignment explanation
Indices: 13510174--13510252 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
13510164 GTTGGCTTAG
*
13510174 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13510200 GCATACGGAGTTCATTCCATATCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13510226 GCATACGGAGTTCATTCC-TAATCTAA
1 GCATACGGAGTTCATTCCAT-ATCTAA
13510252 G
1 G
13510253 ATCGGACCGG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
25 1 0.02
26 50 0.98
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13510773 original size:26 final size:26
Alignment explanation
Indices: 13510743--13510792 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
13510733 GGCTTAGGCG
13510743 TACGGAGTTCATTCC-ATGTCTAAGCA
1 TACGGAGTTCATTCCTA-GTCTAAGCA
13510769 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCTAGTCTAAG
13510793 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCTAGTCTAAGCA
Found at i:13510884 original size:11 final size:11
Alignment explanation
Indices: 13510870--13510904 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
13510860 CCATCGTTGA
13510870 AGCATCGCCGG
1 AGCATCGCCGG
*
13510881 AGCATCACCGG
1 AGCATCGCCGG
13510892 AGCATCGCCGG
1 AGCATCGCCGG
13510903 AG
1 AG
13510905 AGCCTAACCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.23, C:0.34, G:0.34, T:0.09
Consensus pattern (11 bp):
AGCATCGCCGG
Found at i:13511528 original size:25 final size:26
Alignment explanation
Indices: 13511484--13511535 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
13511474 GTTGACTTAG
13511484 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
13511510 GCATACG-AGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13511535 G
1 G
13511536 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13512074 original size:26 final size:26
Alignment explanation
Indices: 13512044--13512096 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13512034 GTTGGCTTAG
13512044 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13512070 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13512096 G
1 G
13512097 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13513578 original size:184 final size:186
Alignment explanation
Indices: 13513244--13513656 Score: 466
Period size: 184 Copynumber: 2.2 Consensus size: 186
13513234 TGTCTAAACG
* ** * * *
13513244 TACAGAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAAGG-T-TACGATAGCAAGACTAGCAG
1 TACAGAGTTCATCCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTACGATAACAAGACTAGCAG
* ** * *
13513307 TAGGATCGGTAGCATGCAGGGGTGGATCGAGCTGATCCCCGAGTTTTACATTCTGCCTCTCCAGC
66 CAGGATCGACAGCATGCAGGGGTGGACCGAGCTGATCCCCGAGTTTCACATTCTGCCTCTCCAGC
* ** * *
13513372 TGGCCTCTCTGGCCTACTGAGCACTCGTACGCTT-GTTTCGTGGGTTGACTTAGGCA
131 CGGCCTCTCCAGCCTACTGAGCACCCGCACG-TTCGTTTCGTGGGTTGACTTAGGCA
*
13513428 TACAGAGTTCATCCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTA-G-TAACAGGACTAGCAG
1 TACAGAGTTCATCCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTACGATAACAAGACTAGCAG
* * *
13513491 CAGGATCGACAGCAT-CTAGGGGTGGACCGAGCTGATCCCTG-GCTTTCGCATTCTGCCTCTTC-
66 CAGGATCGACAGCATGC-AGGGGTGGACCGAGCTGATCCCCGAG-TTTCACATTCTGCCTCTCCA
* *
13513553 GACCGGGCTCTCCAGCCTGCTGAGCACCCGCACGTTCGTTTCGTGGGTTGACTTAGGCA
129 G-CCGGCCTCTCCAGCCTACTGAGCACCCGCACGTTCGTTTCGTGGGTTGACTTAGGCA
** * * * *
13513612 TATGGAGCTCATCCCCAATCTAAGATTGGA-CCGAGCCGAGGGTTG
1 TACAGAGTTCATCCCCAGTCTAAGATCGGATCGGA-CCGAGGGTTG
13513657 CGATAGCAGG
Statistics
Matches: 194, Mismatches: 28, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
183 8 0.04
184 182 0.94
185 2 0.01
186 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (186 bp):
TACAGAGTTCATCCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTACGATAACAAGACTAGCAG
CAGGATCGACAGCATGCAGGGGTGGACCGAGCTGATCCCCGAGTTTCACATTCTGCCTCTCCAGC
CGGCCTCTCCAGCCTACTGAGCACCCGCACGTTCGTTTCGTGGGTTGACTTAGGCA
Found at i:13513804 original size:26 final size:26
Alignment explanation
Indices: 13513768--13513820 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13513758 GTTGACTTAG
13513768 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
13513794 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
13513820 G
1 G
13513821 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:13515182 original size:26 final size:25
Alignment explanation
Indices: 13515147--13515204 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 25
13515137 TGGGTTGACT
13515147 TAGGCATACGGAGTTCATCCCCAATC
1 TAGG-ATACGGAGTTCATCCCCAATC
* *
13515173 TAAGGATACGGAGTTCATTCCCAGTC
1 T-AGGATACGGAGTTCATCCCCAATC
13515199 TAGGAT
1 TAGGAT
13515205 CGGGCCAGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 5 0.17
26 21 0.72
27 3 0.10
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (25 bp):
TAGGATACGGAGTTCATCCCCAATC
Found at i:13515470 original size:159 final size:160
Alignment explanation
Indices: 13515303--13515838 Score: 501
Period size: 160 Copynumber: 3.4 Consensus size: 160
13515293 TCGGGTGAGT
*
13515303 GCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
1 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * *
13515368 CTGACCGAGGGTTGTGGCAGCTGGA-CCAGCAGCACGCAGAAGGGGATCGGGCCGATCCCCGACT
66 CGGACCGAGGGTTGTGGCAGCGGGATCCAGCAGCACGCAGAAGGGGACCGGGCCGATCCCCGACT
* * *
13515432 TGCGCATTATGCCTCTTCAGCT-TGCTCAAC
131 TGCACATTATACCTCTTC-GCTCGGCTCAAC
* * * * *
13515462 GCCTGCACGTCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAACCCCAGC
1 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* *** * * * *
13515527 CGGACCGAGGGTTGTTGCAGCGGGATTGGGCAGCACGCAGAGGGGGACCGGGTCGATCCTCGGCT
66 CGGACCGAGGGTTGTGGCAGCGGGATCCAGCAGCACGCAGAAGGGGACCGGGCCGATCCCCGACT
*
13515592 TGCACATTATACCTCTTCGGTCGGCTCAAC
131 TGCACATTATACCTCTTCGCTCGGCTCAAC
* * * * * ****
13515622 GCCCGTACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATTGG
1 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG
* * * * ** * * *
13515685 ACCAGACTGAGGGTTGTGGCAGCAGGATCGA-CAGCACATAG-GGGGGACAGGGTCGATCCCCCG
65 -CCGGACCGAGGGTTGTGGCAGCGGGATCCAGCAGCACGCAGAAGGGGACCGGGCCGAT-CCCCG
* * * * * * * **
13515748 -CTTACGCATTCTGCCTCTCCGGTCGGCTGAGT
128 ACTTGCACATTATACCTCTTCGCTCGGCTCAAC
* * * ** *
13515780 GCCCGCACACTCGTTTCGTGGGTTGGCTTAAGCATACAGAGTTAATTCCATGTCTAAGC
1 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
13515839 ATACGGAGTT
Statistics
Matches: 311, Mismatches: 59, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
157 3 0.01
158 87 0.28
159 96 0.31
160 123 0.40
161 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (160 bp):
GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
CGGACCGAGGGTTGTGGCAGCGGGATCCAGCAGCACGCAGAAGGGGACCGGGCCGATCCCCGACT
TGCACATTATACCTCTTCGCTCGGCTCAAC
Found at i:13515665 original size:160 final size:159
Alignment explanation
Indices: 13515228--13515836 Score: 595
Period size: 159 Copynumber: 3.8 Consensus size: 159
13515218 GTATTGCGAT
** * *
13515228 AGCAGGATCGGCAGCACGCAG-GGGGGATTGGG-CTGATCCCTGGCTTGCGCAATT-TGCCTCTC
1 AGCAGGATCGGCAGCACGCAGAGGGGGACCGGGTC-GATCCCCGGCTTGCGC-ATTATGCCTCTT
* * ** * * *
13515290 CGGTCGGGTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
64 CGGTCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* *
13515355 TCTAAGCCCCAGCCTGACCGAGGGTTGTGGC
129 TCTAAACCCCAGCCAGACCGAGGGTTGTGGC
* * * * * * * *
13515386 AGCTGGACCAGCAGCACGCAGAAGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCA
1 AGCAGGATCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCG
* * * * *
13515451 G-CTTGCTCAACGCCTGCACG-TCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTG
66 GTC-GGCTCAACGCCCGCACGCT-CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* *
13515514 TCTAAACCCCAGCCGGACCGAGGGTTGTTGC
129 TCTAAACCCCAGCCAGACCGAGGGTTGTGGC
* * * * *
13515545 AGCGGGATTGGGCAGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGCACATTATACCTCTTC
1 AGCAGGA-TCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTC
* * *
13515610 GGTCGGCTCAACGCCCGTACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-G
65 GGTCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATG
**** *
13515674 TCTAAGATTGGA-CCAGACTGAGGGTTGTGGC
129 TCTAA-ACCCCAGCCAGACCGAGGGTTGTGGC
* ** * * * * *
13515705 AGCAGGATCGACAGCACATAG-GGGGGACAGGGTCGATCCCCCGCTTACGCATTCTGCCTCTCCG
1 AGCAGGATCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCG
* ** * * * *
13515769 GTCGGCTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAAGCATACAGAGTTAATTCCATGTC
66 GTCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
13515834 TAA
131 TAA
13515837 GCATACGGAG
Statistics
Matches: 369, Mismatches: 71, Indels: 22
0.80 0.15 0.05
Matches are distributed among these distances:
157 3 0.01
158 112 0.30
159 125 0.34
160 123 0.33
161 6 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
AGCAGGATCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCG
GTCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAACCCCAGCCAGACCGAGGGTTGTGGC
Found at i:13515784 original size:158 final size:159
Alignment explanation
Indices: 13515178--13515837 Score: 538
Period size: 158 Copynumber: 4.2 Consensus size: 159
13515168 CAATCTAAGG
* * ** * ** * ** *
13515178 ATACGGAGTTCATTCCCAGTCTAGGA-TCGGGCCAGAGCGAGTATTGCGATAGCAGGATCGGCAG
1 ATACGGAGTTCATTCCCAGTCTAAGACCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGACAG
* ** * * **
13515242 CACGCAG-GGGGGATTGGG-CTGATCCCTGGCTTGCGCAATT-TGCCTCTCCGGTCGGGTGAGTG
66 CACGCAGAGGGGGA-CGGGTC-GATCCCCCGCTTGCGC-ATTATGCCTCTCCGGTCGGCTCAACG
* *
13515304 CCCGCACGCCCATTTCGTGGGTTGGCTTAGGC
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * * *
13515336 ATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCTGACCGAGGGTTGTGGCAGCTGGA-CCAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGACCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGA-C
* * * * *
13515398 AGCACGCAGAAGGGGATCGGGCCGAT-CCCCGACTTGCGCATTATGCCTCTTCAG-CTTGCTCAA
64 AGCACGCAGAGGGGGA-CGGGTCGATCCCCCG-CTTGCGCATTATGCCTCTCCGGTC-GGCTCAA
* *
13515461 CGCCTGCACG-TCCGTTTCATGGGTTGGCTTAGGC
126 CGCCCGCACGCT-CGTTTCGTGGGTTGGCTTAGGC
* ** * * * * *
13515495 ATAGGGAGTTCATTCCTTGTCTAA-ACCCCAGCCGGACCGAGGGTTGTTGCAGCGGGATTGGGCA
1 ATACGGAGTTCATTCCCAGTCTAAGACCCCAGCCAGACCGAGGGTTGTGGCAGCAGGA-TCGACA
* * * * *
13515559 GCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGCACATTATACCTCTTCGGTCGGCTCAACGC
65 GCACGCAGAGGGGGA-CGGGTCGATCCCCCGCTTGCGCATTATGCCTCTCCGGTCGGCTCAACGC
* * *
13515624 CCGTACGCTCGTTTCGTGGGTTGACTTATGC
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
**** *
13515655 ATACGGAGTTCATTCCCAGTCTAAGATTGGA-CCAGACTGAGGGTTGTGGCAGCAGGATCGACAG
1 ATACGGAGTTCATTCCCAGTCTAAGACCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGACAG
** * * * **
13515719 CACATAG-GGGGGACAGGGTCGATCCCCCGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGTGCC
66 CACGCAGAGGGGGAC-GGGTCGATCCCCCGCTTGCGCATTATGCCTCTCCGGTCGGCTCAACGCC
* *
13515783 CGCACACTCGTTTCGTGGGTTGGCTTAAGC
130 CGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* *
13515813 ATACAGAGTTAATT-CCATGTCTAAG
1 ATACGGAGTTCATTCCCA-GTCTAAG
13515838 CATACGGAGT
Statistics
Matches: 400, Mismatches: 83, Indels: 38
0.77 0.16 0.07
Matches are distributed among these distances:
157 8 0.02
158 146 0.37
159 118 0.29
160 121 0.30
161 7 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
ATACGGAGTTCATTCCCAGTCTAAGACCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGCAGAGGGGGACGGGTCGATCCCCCGCTTGCGCATTATGCCTCTCCGGTCGGCTCAACGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAGGC
Found at i:13515965 original size:11 final size:11
Alignment explanation
Indices: 13515933--13515958 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
13515923 CCCGAGGCAC
13515933 CATCACCGGAG
1 CATCACCGGAG
13515944 CATCACCGGAG
1 CATCACCGGAG
13515955 CATC
1 CATC
13515959 GTCGGAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.38, G:0.23, T:0.12
Consensus pattern (11 bp):
CATCACCGGAG
Found at i:13518746 original size:158 final size:159
Alignment explanation
Indices: 13518416--13518883 Score: 457
Period size: 158 Copynumber: 2.9 Consensus size: 159
13518406 NNNNNNNNNN
* * * * * *
13518416 CCAGATCGAGGGTTGCGATAGCAGGATCG-CTAGCACACA-GAGGGATCGGAGCCGATCCTCGGC
1 CCAGACCGAAGGTTGCGACAGCAGGATCGAC-AGCACACAGGGGGGATCAG-GTCGATCCTCGGC
* * * * *
13518479 TTGTGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCCCGTTTCATGTGTTGGCTTAGGTA
64 TTGTACATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCA
* * *
13518544 TAGGGAGTTCATT-CCATGTCTAAGCCCCAG
129 TACGGAGTTCATTCCCATGTCTAAGACCCAA
* * * * ** ** *
13518574 CCGGATCGAGGGTTGTGGTAGTGGGA-CTGACAGCACGCAGAGGGGGATC-GG-CTGATCCTCGG
1 CCAGACCGAAGGTTGCGACAGCAGGATC-GACAGCACACAG-GGGGGATCAGGTC-GATCCTCGG
* * * *
13518636 CTTGTACATTCTGCCTCTCCGATCGACTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGC
63 CTTGTACATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* *
13518701 ATACGGAGTTCATTCCCA-GTCTAAGATCGAA
128 ATACGGAGTTCATTCCCATGTCTAAGACCCAA
* * *
13518732 CCAGACCGAAGGTTGCGACAGCAGGATCGACAGCATATAGGGGGGATCAGGTCGATCCTCGACTT
1 CCAGACCGAAGGTTGCGACAGCAGGATCGACAGCACACAGGGGGGATCAGGTCGATCCTCGGCTT
* * * * * *
13518797 GCACATTCTGCCTCTCCGACCGGCTGACCGCCCAGACGCACACTCGTTTCGTGGGTTGGCTTAGG
66 GTACATTCTGCCTCTCCGATCGACTGAGCG-CC---CGCACGCTCGTTTCATGGGTTGGCTTAGG
13518862 CATACGGAGTTCATT-CCATGTC
127 CATACGGAGTTCATTCCCATGTC
13518884 GAAGCATACG
Statistics
Matches: 253, Mismatches: 43, Indels: 24
0.79 0.13 0.08
Matches are distributed among these distances:
157 10 0.04
158 181 0.72
159 9 0.04
160 7 0.03
161 3 0.01
162 43 0.17
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
CCAGACCGAAGGTTGCGACAGCAGGATCGACAGCACACAGGGGGGATCAGGTCGATCCTCGGCTT
GTACATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
CGGAGTTCATTCCCATGTCTAAGACCCAA
Found at i:13519257 original size:26 final size:26
Alignment explanation
Indices: 13519228--13519280 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13519218 GTTGACTTAG
*
13519228 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13519254 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13519280 G
1 G
13519281 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13519547 original size:158 final size:158
Alignment explanation
Indices: 13519261--13519756 Score: 483
Period size: 158 Copynumber: 3.1 Consensus size: 158
13519251 TAAGCATATA
* * * * * ** *
13519261 GAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGTAGCTGGATCGGTAGCACG
1 GAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTAGTGGCAACAGGATCGACAACACG
* * *
13519324 --GAGGGGGAACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGC-CGAGCACCCG
65 CAGAGGGGG-ACCGGGCCGATCCCC-GCTTGCGCATTCTGCCTCTCGGA-CGGCTC-AGCACCTG
* ** *
13519386 CACGCCCGTTTTGTGGGTTGGCTTAGGCATAGG
126 CACGCTCGTTTCATGGGTTGGCTTAGGCATACG
* ** *
13519419 GAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTAGTGGCAATGGGA-CTGGC-ACACG
1 GAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTAGTGGCAACAGGATC-GACAACACG
* * **
13519481 CAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCTGGGCGGCTCAGTGCCTGCA
65 CAGAGGGGGACCGGGCCGATCCCC-GCTTGCGCATTCTGCCTCTC-GGACGGCTCAGCACCTGCA
* *
13519546 CGCTCGTTTCATGGGTTGACTTATGCATACG
128 CGCTCGTTTCATGGGTTGGCTTAGGCATACG
* * * * *
13519577 GAGTTCATTCC-TAGTCTAAG-ATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGACAACATG
1 GAGTTCATTCCAT-GTCTAAGCACCAGACCGGACCGAGGGTAGTGGCAACAGGATCGACAACACG
* * * * *
13519640 CAG-GGGGGACCAGGCCGATCCCCGATTTGCGCATTCTACCTCTCCGACTGGCTGAGCACCTGCA
65 CAGAGGGGGACCGGGCCGATCCCCG-CTTGCGCATTCTGCCTCTCGGAC-GGCTCAGCACCTGCA
* *
13519704 CGCTCGTTTCCTGGGTTGGCTTAGGCATATG
128 CGCTCGTTTCATGGGTTGGCTTAGGCATACG
13519735 GAGTTCATTCCATGTCTAAGCA
1 GAGTTCATTCCATGTCTAAGCA
13519757 TACGAAGTTC
Statistics
Matches: 278, Mismatches: 45, Indels: 29
0.79 0.13 0.08
Matches are distributed among these distances:
157 15 0.05
158 241 0.87
159 22 0.08
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTAGTGGCAACAGGATCGACAACACGC
AGAGGGGGACCGGGCCGATCCCCGCTTGCGCATTCTGCCTCTCGGACGGCTCAGCACCTGCACGC
TCGTTTCATGGGTTGGCTTAGGCATACG
Found at i:13520941 original size:158 final size:157
Alignment explanation
Indices: 13520475--13520977 Score: 555
Period size: 158 Copynumber: 3.2 Consensus size: 157
13520465 CCCAGTCTAA
* **
13520475 GCATACGAAGTTCATTTCCA-GTCTAAGATCAAACAGAACCGAGGGTTGCAGCAGCAGGATCGAC
1 GCATACGAAGTTCA-TTCCATGTCTAAGATCGAACAG-ACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
13520539 AGCACGTAGGAGGGACTGGGTCGATCCCCGACTTGCGCATTCTACCTCTTCGACCGGTTGAGCGC
64 AGCACGTAGGGGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* * * *
13520604 CCGTACACCCGTTTCATCGGTTGGCTTAG
129 CCGTACGCTCATTTCATGGGTTGGCTTAG
* * * * * * * * * *
13520633 GCATAGGGAGTTCATTCCATGTCTAATCA-CCAGTCGGACCAAGGGTTGTGGCAGCGGGACCGAT
1 GCATACGAAGTTCATTCCATGTCTAA-GATCGA-ACAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
13520697 AGCACGCAGAAGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCA
64 AGCACGTAG-GGGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
*
13520762 CCCGTACGCTCATTTCATGGGTTGACTTAG
128 CCCGTACGCTCATTTCATGGGTTGGCTTAG
* *
13520792 GCATACGAAGTTCATTCCCA-GTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGAAGTTCATT-CCATGTCTAAGATC-GAACAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * *
13520856 AGCACGTTGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGC
64 AGCACGTAGGGGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* *
13520921 CCGCACGCTCATTTCGTGGGTTGGCTTAG
129 CCGTACGCTCATTTCATGGGTTGGCTTAG
*
13520950 GCATA-TAGAGTTCATTCCATGTCTAAGA
1 GCATACGA-AGTTCATTCCATGTCTAAGA
13520978 ATACGGAGTT
Statistics
Matches: 281, Mismatches: 55, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
157 9 0.03
158 144 0.51
159 124 0.44
160 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCGAACAGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGTAGGGGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
GTACGCTCATTTCATGGGTTGGCTTAG
Found at i:13521853 original size:157 final size:156
Alignment explanation
Indices: 13521376--13521853 Score: 415
Period size: 157 Copynumber: 3.0 Consensus size: 156
13521366 CATTCCCAAC
* * ** * *
13521376 CTAAGATCAAACCGGACCGACGGTTGCGGTAGCAGGATCGGTAGCACATAGGGGGGATCGGAACG
1 CTAAGATCAAACCGGACCGAGGGTTGTGGTAGCAGGATCGACAACACATAGGGGGG-TCGG-CCG
** * * ** * * *
13521441 ATCCCTAACTTGCGTATTCTGCCTCTCTGGCCGGTTGAGTACCCGCACGC-CTGTTTCGTGGGTT
64 ATCCCCGACTTGCGCATTCTGCCTCTCCGGTAGGCTGAGCACCCGCACGCTC-GTTTCTTGGGTT
* *
13521505 GGCTTAGGCA-AGGGAGTTCATTCCATAT
128 GGCTTAGGCATACGGAGTTCATTCCATGT
** * ** * * * * * * * * *
13521533 CTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGCGGGACCGACAGCATACAGAGAGGGATCGGGCT
1 CTAAGATCAAACCGGACCGAGGGTTGTGGTAGCAGGATCGACA--ACACATAGGGGGGTC-GGCC
* * * * * * * *
13521598 GATCCCCGGCTTGCGCATTATGCCTCTTCAGTTGGCTCAGCGCCCGCACGCTCCTTT-TGTGGGT
63 GATCCCCGACTTGCGCATTCTGCCTCTCCGGTAGGCTGAGCACCCGCACGCTCGTTTCT-TGGGT
* * *
13521662 TGACTTATGCATACGGAGTTCATTCCCA-GC
127 TGGCTTAGGCATACGGAGTTCATT-CCATGT
* * *
13521692 CTAAGATCGAACCGGATCGAGGGTTGTGGTAGCAGGATCGACAACACATAGGGGGGTCGAGCCAA
1 CTAAGATCAAACCGGACCGAGGGTTGTGGTAGCAGGATCGACAACACATAGGGGGGTCG-GCCGA
* * *
13521757 TCCCCGACTTGCGCATTCTACCTCTCCGGTAGACTGAGCACCCGCATGCTCGTTTCTTGGGTTGG
65 TCCCCGACTTGCGCATTCTGCCTCTCCGGTAGGCTGAGCACCCGCACGCTCGTTTCTTGGGTTGG
13521822 CTTAGGCATACGGAGTTCATTCCATGT
130 CTTAGGCATACGGAGTTCATTCCATGT
13521849 CTAAG
1 CTAAG
13521854 CATACGGAGT
Statistics
Matches: 240, Mismatches: 71, Indels: 20
0.73 0.21 0.06
Matches are distributed among these distances:
156 4 0.02
157 121 0.50
158 57 0.24
159 55 0.23
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
CTAAGATCAAACCGGACCGAGGGTTGTGGTAGCAGGATCGACAACACATAGGGGGGTCGGCCGAT
CCCCGACTTGCGCATTCTGCCTCTCCGGTAGGCTGAGCACCCGCACGCTCGTTTCTTGGGTTGGC
TTAGGCATACGGAGTTCATTCCATGT
Done.