Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 98 of 402
Found at i:13521856 original size:26 final size:26
Alignment explanation
Indices: 13521827--13521879 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13521817 GTTGGCTTAG
13521827 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13521853 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13521879 G
1 G
13521880 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13522245 original size:26 final size:26
Alignment explanation
Indices: 13522216--13522268 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13522206 GTTGACTTAG
13522216 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
13522242 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13522268 G
1 G
13522269 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13522400 original size:888 final size:859
Alignment explanation
Indices: 13520377--13524505 Score: 3205
Period size: 866 Copynumber: 4.7 Consensus size: 859
13520367 GCACCTATTC
** * * * *
13520377 GATCCCCGGCTTACGCATCCTGCCTCTCAGGTCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTACGCATTATGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCATTTTGTGGGTT
* * * * * * *
13520442 GACTTAGGCATTCGGAGTTTATCCCCAGTCTAAGCATACGAAGTTCATTTCCAGTCTAAGATCAA
66 GACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAG
* * * ** * *
13520507 ACAGAACCGAGGGTTGCAGCAGCAGGATCGACAGCACGTAGGAGGGA-CTGGGTCGATCCCCGAC
131 ACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACATAGGGGGGATC-GGGTCGAT-CCCGAC
* * * * * * * *
13520571 TTGCGCATTCTACCTCT-TCGACCGGTTGAGCGCCCGTACACCCGTTTCATCGGTTGGCTTAGGC
194 TTGCGAATTCTACCTCTCT-GA-CGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGC
* * * *
13520635 ATAGGGAGTTCATTCCATGTCTAATCACCAGTCGGACCAAGGGTTGTGGCAGCGGGACCGATAGC
257 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGC
** * * * *
13520700 ACGCAGA-AGGGGA-CTGGGCCGATCCCCGGCTTGCGCATTATGCCTC-TCCGATCGGCTCAGCA
322 ATACAGAGA-GGGATC-GGGCTGATCCCCGACTTGCGCATTATGCCTCTTCCGCT-GGCTCAGCG
* ** * *
13520762 CCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACC
384 CCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GACC
* * * ** * * *
13520827 AGACTGAGGGTTGTGGCAGCAGGATCGACAGCACG-TTGGGGGGACCGGGTCGATCCCCGACTTG
448 GGACCGAGGGTTG-GGTAGCAGGATCGACA--ACGCAAGGGGGG-TCGAGCCGATCCCCGACTTG
* ** ** *
13520891 CGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA-
509 CGCATTCTACCTCTCCGGT-GATTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * * * *
13520955 TAGAGTTCATTCCATGTCTAAGAATACGGAGTTCATTCACAGTCTAAGA-TCGGACCAGATCGAG
573 GA-AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTCAGACCGGACCGAG
* * * ** * *
13521019 GGTTGCAGTAGCAGGACTAGCAGCAGGATCGACAGCACGCAGGGGGGACCGG-GTCGATCC-CTG
637 GGTTGCGGTAGCAGGACCAGCACCAGGATCGACAGCACGCAGGAAGCACCGGCG--GAGCCTC-G
* * * ** * * ** ** * * * * *
13521082 GCTTGTGTATTCTACCTCTCTGGCCGACTAAGCACCCACACGCTCGTT-AGTGGGTTGGCTTAGG
699 ACTTGCGCATTCCGCATCTCGGGCCGACGGAGTGCCCGCACGATCATTGCGTGGGATGGCTTAGG
* * * * * * *
13521146 CATACGGAGTTCA-TCCATGTCTAAGCCCTAGTCGAATCGAAGGTTGTGGCAGCAGGACTGGTAG
764 CATACAGAGTTCATTCCATGTCTAAGCCCCA--CGAATCGAGGGTTGTGGCAGAAAGACCGGAAG
* * * * * * * *
13521210 CGGGATCGGCAGCATGTAAAGGGGGATCGGGCT
827 CGAGATCGACAGCACGCAGAGGGGGACCAGACT
* * *
13521243 GATCTCCGGCTTGCGCATTATGCCTCTTCGGTCGGCCTCTCCGGTCGACTGAGCGCCCGCACGCT
1 GATCCCCGGCTTACGCATTATGCCTC-TC---CGG-----CC---AG-CTGAGCGCCCGCACGCT
* * * *
13521308 CATTTTATGGGTTGACATAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGAAGTTCATTCCC
53 CATTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCC
** * * * *
13521373 AACCTAAGATCAAACCGGACCGACGGTTGCGGTAGCAGGATCGGTAGCACATAGGGGGGATCGGA
118 AGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACATAGGGGGGATCGGG
* * * * * * * **
13521438 ACGATCCCTAACTTGCGTATTCTGCCTCTCTGGCCGGTTGAGTACCCGCACGCCTGTTTCGTGGG
183 TCGATCCC-GACTTGCGAATTCTACCTCTCT-GACGGCTGAGCACCCGCACGCCCATTTCGTGGG
* *
13521503 TTGGCTTAGGCA-AGGGAGTTCATTCCATATCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGCG
246 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCG
* * *
13521567 GGACCGACAGCATACAGAGAGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCAGTTG
311 GGACCGACAGCATACAGAGAGGGATCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTCCGCTG
** * * *
13521632 GCTCAGCGCCCGCACGCTCCTTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGCCTAAG
376 GCTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
13521697 ATCGAACCGGATCGAGGGTTGTGGTAGCAGGATCGACAACACATAGGGGGGTCGAGCCAATCCCC
441 ATCG-ACCGGACCGAGGGTTG-GGTAGCAGGATCGACAACGCA-AGGGGGGTCGAGCCGATCCCC
* * *
13521762 GACTTGCGCATTCTACCTCTCCGGTAGACTGAGCACCCGCATGCTCGTTTCTTGGGTTGGCTTAG
503 GACTTGCGCATTCTACCTCTCCGGT-GATTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
13521827 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCAC
567 GCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA--TTCAG--AC
* * * * * * ****** *
13521892 GGTGCACATGCTGGGCTTG-GGCATGTGCTGGTGCCA-CATTTTTTTCGCCTAGGGCAC-CATCG
628 CG-G-AC-CG-AGGG-TTGCGG--T-AGCAGG-ACCAGCACCAGGATCGAC-A--GCACGCA--G
* * * *
13521954 TCGAAGCATCGTCGGAGAGCCTAACCGACGGCATTGCG-AGTTCCGACGAT-TGGGGGGGCCG-G
679 --GAAGCACCGGC-G-GAGCCT---CGA---C-TTGCGCA-TTCCG-C-ATCT---CGGGCCGAC
* ** * *
13522016 GGGGTGTGCGCAC-ATCATGTGCGAT-GGAT-GC-T-GGTATACGGAGTTCATTCCATGTCTAAG
727 GGAGTGCCCGCACGATCAT-TGCG-TGGGATGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
*
13522076 CCCC-CGAATCGAGGGTTGTGGCA-AAAGATCGGAAGCGAGATCGACAGCACGCAGAGGGGGACC
790 CCCCACGAATCGAGGGTTGTGGCAGAAAGACCGGAAGCGAGATCGACAGCACGCAGAGGGGGACC
13522139 AGACT
855 AGACT
* * * * *
13522144 GATCCCCGGCTTGCGCATTTTGCCTCTCCGGCCAGCTGAGCGCTCGCATGCTCATTTCGTGGGTT
1 GATCCCCGGCTTACGCATTATGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCATTTTGTGGGTT
13522209 GACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAG
66 GACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAG
* * *
13522274 ATCGGACCGAGGGTTGGGGCAGCAGGATCGGTAGCACATTGGGGGGATCGGGTCGATCCTCGACT
131 ACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACATAGGGGGGATCGGGTCGATCC-CGACT
* * * * *
13522339 TACGCATTCTACCTCTCTGATCGACTGAGCACCCGCGCGCCCATTTCGCGGGTTGGCTTAGGCAT
195 TGCGAATTCTACCTCTCTGA-CGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCAT
* * * * * *
13522404 AGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACTGAGGGTTGTGGCAGCCGGACTGGCA-CAT
259 AGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCAT
* * ** * *
13522468 ACAGAGTGGGATCGGG-TCGGTCCCCTTCTTGCGCATTATGCCT-TTCCGCTAGCTCAGTGCCCG
324 ACAGAGAGGGATCGGGCT-GATCCCCGACTTGCGCATTATGCCTCTTCCGCTGGCTCAGCGCCCG
*
13522531 CACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGAAC
388 CACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGAC
* ** ** * *
13522596 CGAAGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCGTCCCGATCCCTGGCTTGCGCA
452 CGAGGGTTG-GGTAGCAGGATCGACA--ACGCA-AGGGGGGTCGAGCCGATCCCCGACTTGCGCA
* * * *
13522661 TTCTACCTTTTCGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAG
513 TTCTACCTCTCCGGT-GATTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAG
** * *
13522726 TTCATTCCATGTCTAAGCATATAGAGTTCATTCCTAGTCTAACA-TCAGACCGGACCGAGGGTTG
577 TTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTCAGACCGGACCGAGGGTTG
** * *
13522790 CGGTAGCAGGACCAGCACCAGGATCGACAGCACGCAGGGGGGACCGGCGGATCCTCGACTTGCGC
642 CGGTAGCAGGACCAGCACCAGGATCGACAGCACGCAGGAAGCACCGGCGGAGCCTCGACTTGCGC
* * * * * * * *
13522855 ATTCTGCCTCTCTGGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGA
707 ATTCCGCATCTCGGGCCGACGGAGTGCCCGCACGATCATTGCGTGGGATGGCTTAGGCATACAGA
* * * * * *
13522920 GTTCATTCCATGTCTAAGCCCCAATCGGATCGAGGGTTGTGGTAGTAGGACCGGCAGCGGGATCG
772 GTTCATTCCATGTCTAAGCCCC-A-CGAATCGAGGGTTGTGGCAGAAAGACCGGAAGCGAGATCG
* *
13522985 ACAGCACGTAGAGGGGGACCGGACT
835 ACAGCACGCAGAGGGGGACCAGACT
* ** * *
13523010 GATCCCCGGCTTACGCATTATGCATCTCCGGCCAATTGAGCACCCGCACGCTCGTTTTGTGGGTT
1 GATCCCCGGCTTACGCATTATGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCATTTTGTGGGTT
* * * *
13523075 GACTTAGGCATAC-AGAGTTCAACTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
66 GACTTAGGCATACGA-AGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCA
* * * ** * * *
13523139 GACCGGACTGAGGGTTGCGACAACAGGATCGGTAGCACGCAGGGGGGATCGGGTTGGTCCCCGGC
130 GACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACATAGGGGGGATCGGGTCGAT-CCCGAC
* * * * *
13523204 TTGTGAATTTTACCTCTCTGACTGGCTGAGCGCCCGCATGCCCTTTTCGTGGGTTGGCTTAGGCA
194 TTGCGAATTCTACCTCTCTGAC-GGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCA
* *
13523269 TAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGATGTTGTGGCAGCGAGACC-AGCAG
258 TAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAG-GGTTGTGGCAGCGGGACCGA-CAG
* * * * * * * *
13523333 CATGCCGAAAGGGATCAGGCCGATCCCTGACTTGCGCATTATGCCTC-TCCGACCGGCTCAACGC
321 CATACAGAGAGGGATCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTCCG-CTGGCTCAGCGC
* *
13523397 CCGAACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCG
385 CCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCG
* * * * **
13523462 GACCGAGGGTTGCG-A-C---A--G-C-ACGC-AGGGGGGATCGGGCCGGTCCTCGACTTGCATA
449 GACCGAGGGTTGGGTAGCAGGATCGACAACGCAAGGGGGG-TCGAGCCGATCCCCGACTTGCGCA
** * *
13523517 TTCTGTCTCTCCGGCTGATTGAGCACCCGCACGCTCGTTTCGTGGATTGGCTGAGGCATACGAAG
513 TTCTACCTCTCCGG-TGATTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAG
* * * *
13523582 TTCATTCTATGTCTAAGCATACGAAGTTCATT--CAGTCTAAGA-TCGGACTGGACCGAGGGTTG
577 TTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTCAGACCGGACCGAGGGTTG
* * * * * * * ** * * * * * *
13523644 CAGCAGTAGGACTAGCAGCAGGATTGGCAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGTG
642 CGGTAGCAGGACCAGCACCAGGATCGACAGCACGCAGGAAGCACC-GGCGGAGCCTCGACTTGCG
* * * * * * * * * * *
13523709 CATTCTGCCTCTCCGGCCTG-CTGAGTGCCCGTACGCTCGTTTCGTGGGTTAGCTTAGGCATACT
706 CATTCCGCATCTCGGGCC-GACGGAGTGCCCGCACGATCATTGCGTGGGATGGCTTAGGCATACA
* * * * * * * * * * *
13523773 TAGTTCTTTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGACAGCAGGATCGGCAGCGGGAT
770 GAGTTCATTCCATGTCTAAGCCCCA--CGAATCGAGGGTTGTGGCAGAAAGACCGGAAGCGAGAT
* * * * *
13523838 CGATAGCATGCATAGGAGGACCAGGCT
833 CGACAGCACGCAGAGGGGGACCAGACT
** * ** * * *
13523865 GATCCTTGGCTTACGCGTTATGCCTCTCCGGTCGGCCTCTCTGATCGGCTAAGCGCTGCATGCTT
1 GATCCCCGGCTTACGCATTATGCCTCT-C---CGGCC-AGCTGA---GC---GC-CCGCACGCTC
* * * * * *
13523930 GTTTCGTGGGTTGGCTTAGGCAAATGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCA
54 ATTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCA
* * * * * * ** * *
13523995 ATCTAAGAT-GGAACCGGATCGATGGTTGCGGCTGCAAGATCGGTAGCACGCAGAGGGGATCGAG
119 GTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACATAGGGGGGATCGGG
* * * * * * * *
13524059 TCGATCCTC-AGCTTGCGCATTCTGCCTCT-TCGATCGGTTGAGCGCCCGCACACTCGTTTTGTG
183 TCGATCC-CGA-CTTGCGAATTCTACCTCTCT-GA-CGGCTGAGCACCCGCACGCCCATTTCGTG
* ** * * * *
13524122 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAACCAGATCGAGGGTTATGGTAG
244 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAG
** ** * * ** * * * *
13524187 CGGGACCGGTAGCACGCAGAGGGGGATTGGGCCAATCCCCGTCTTGCGCATTTTGCCTC-TCTGG
309 CGGGACCGACAGCATACAGAGAGGGATCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTCCGC
* * * ** * * *
13524251 TCGGCTCAGCGTCCACACACTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCTAGTCT
374 T-GGCTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* ** * * * * * *
13524316 AAGATCGAACCGGACTGAGGGTTGTGACAGCTGGATCGATAGCCCGC-AGGGGGGACTGGGCCAA
438 AAGATCG-ACCGGACCGAGGGTTG-GGTAGCAGGATCGACA--ACGCAAGGGGGGTC-GAGCCGA
* * ** ** * ** **
13524380 TCCCCGACTTGTGCATTCTACCTCTCCAGCTGGCTGAGCTTCCGCACGGTTATTTTTTGGGTTGG
498 TCCCCGACTTGCGCATTCTACCTCTCC-GGTGATTGAGCACCCGCACGCTCGTTTCGTGGGTTGG
* * * *
13524445 CTTGGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATT
562 CTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
13524506 TTGAGCCACG
Statistics
Matches: 2632, Mismatches: 493, Indels: 261
0.78 0.15 0.08
Matches are distributed among these distances:
854 65 0.02
855 177 0.07
856 100 0.04
857 5 0.00
858 6 0.00
859 20 0.01
860 10 0.00
861 4 0.00
862 39 0.01
863 5 0.00
865 20 0.01
866 453 0.17
867 226 0.09
868 42 0.02
869 86 0.03
870 3 0.00
871 6 0.00
872 1 0.00
873 1 0.00
874 5 0.00
875 3 0.00
876 6 0.00
877 128 0.05
878 301 0.11
879 192 0.07
880 19 0.01
881 2 0.00
882 4 0.00
883 2 0.00
884 4 0.00
885 1 0.00
886 7 0.00
887 101 0.04
888 233 0.09
889 189 0.07
890 3 0.00
891 2 0.00
892 6 0.00
893 1 0.00
895 5 0.00
896 4 0.00
897 4 0.00
899 1 0.00
900 3 0.00
901 56 0.02
902 20 0.01
903 7 0.00
904 16 0.01
905 20 0.01
906 8 0.00
907 9 0.00
908 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (859 bp):
GATCCCCGGCTTACGCATTATGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCATTTTGTGGGTT
GACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAG
ACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACATAGGGGGGATCGGGTCGATCCCGACTT
GCGAATTCTACCTCTCTGACGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCATAC
AGAGAGGGATCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTCCGCTGGCTCAGCGCCCGCAC
GCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAG
GGTTGGGTAGCAGGATCGACAACGCAAGGGGGGTCGAGCCGATCCCCGACTTGCGCATTCTACCT
CTCCGGTGATTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCA
TGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTCAGACCGGACCGAGGGTTGCGGTAGCAG
GACCAGCACCAGGATCGACAGCACGCAGGAAGCACCGGCGGAGCCTCGACTTGCGCATTCCGCAT
CTCGGGCCGACGGAGTGCCCGCACGATCATTGCGTGGGATGGCTTAGGCATACAGAGTTCATTCC
ATGTCTAAGCCCCACGAATCGAGGGTTGTGGCAGAAAGACCGGAAGCGAGATCGACAGCACGCAG
AGGGGGACCAGACT
Found at i:13523088 original size:171 final size:170
Alignment explanation
Indices: 13522742--13523110 Score: 449
Period size: 171 Copynumber: 2.2 Consensus size: 170
13522732 CCATGTCTAA
* *
13522742 GCATATAGAGTTCATTCC-TAGTCTAA-CATCAGACCGGACCGAGGGTTGCGGTAGCAGGACCAG
1 GCATACAGAGTTCATTCCAT-GTCTAAGCACCAGACCGGACCGAGGGTTGCGGTAGCAGGACCAG
* * * * *
13522805 CACCAGGATCGACAGCACGCAGGGGGGACCGGCGGATCCTCGACTTGCGCATTCTGCCTCTCTGG
65 CACCAGGATCGACAGCACGCAGGGGGGACCGGCGGATCCCCGACTTACGCATTATGCATCTCCGG
* ** *
13522870 CCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCAACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
13522911 GCATACAGAGTTCATTCCATGTCTAAGCCCCA-ATCGGATCGAGGGTTGTGGTAGTAGGACCGGC
1 GCATACAGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGTAGCAGGACCAGC
* * * * *
13522975 AGCGGGATCGACAGCACGTAGAGGGGGACCGGACTGATCCCCGGCTTACGCATTATGCATCTCCG
66 ACCAGGATCGACAGCACGCAG-GGGGGACCGG-CGGATCCCCGACTTACGCATTATGCATCTCCG
* *
13523040 GCCAATTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAG
129 GCCAACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
13523082 GCATACAGAGTTCAACTCCA-GTCTAAGCA
1 GCATACAGAGTTC-ATTCCATGTCTAAGCA
13523111 TACGGAGTTC
Statistics
Matches: 169, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
169 68 0.40
170 14 0.08
171 82 0.49
172 5 0.03
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (170 bp):
GCATACAGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGTAGCAGGACCAGC
ACCAGGATCGACAGCACGCAGGGGGGACCGGCGGATCCCCGACTTACGCATTATGCATCTCCGGC
CAACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:13523118 original size:26 final size:26
Alignment explanation
Indices: 13523082--13523134 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13523072 GTTGACTTAG
13523082 GCATACAGAGTTCAACT-CCAGTCTAA
1 GCATACAGAGTTC-ACTCCCAGTCTAA
* *
13523108 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
13523134 G
1 G
13523135 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:13523608 original size:26 final size:24
Alignment explanation
Indices: 13523572--13523622 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 24
13523562 ATTGGCTGAG
13523572 GCATACGAAGTTCATTCTATGTCTAA
1 GCATACGAAGTTCATTC-A-GTCTAA
13523598 GCATACGAAGTTCATTCAGTCTAA
1 GCATACGAAGTTCATTCAGTCTAA
13523622 G
1 G
13523623 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 7 0.28
25 1 0.04
26 17 0.68
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (24 bp):
GCATACGAAGTTCATTCAGTCTAA
Found at i:13524296 original size:159 final size:159
Alignment explanation
Indices: 13524035--13524405 Score: 367
Period size: 159 Copynumber: 2.3 Consensus size: 159
13524025 GCTGCAAGAT
* * * * * *
13524035 CGGTAGCACGCAGA-GGGGATCGAGTCGATCCTCAGCTTGCGCATTCTGCCTCT-TCGATCGGTT
1 CGGTAGCACGCAGAGGGGGATTGGGCCAATCC-CCGCTTGCGCATTCTGCCTCTCTCGATCGGCT
* * * ** * * * *
13524098 GAGCGCCCGCACACTCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC-ATGTTTAAGCC
65 CAGCGCCCACACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTA-GTCTAAGAC
**
13524162 CCAACCAGA-TCGAGGGTTATGGTAGCGGGAC
129 CCAACCAGACT-GAGGGTTATGACAGCGGGAC
* *
13524193 CGGTAGCACGCAGAGGGGGATTGGGCCAATCCCCGTCTTGCGCATTTTGCCTCTCT-GGTCGGCT
1 CGGTAGCACGCAGAGGGGGATTGGGCCAATCCCCG-CTTGCGCATTCTGCCTCTCTCGATCGGCT
* * *
13524257 CAGCGTCCACACACTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCTAGTCTAAGATC
65 CAGCGCCCACACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGACC
* * * * *
13524322 GAACCGGACTGAGGGTTGTGACAGCTGGAT
130 CAACCAGACTGAGGGTTATGACAGCGGGAC
* * * * *
13524352 CGATAGCCCGCAG-GGGGGACTGGGCCAATCCCCGACTTGTGCATTCTACCTCTC
1 CGGTAGCACGCAGAGGGGGATTGGGCCAATCCCCG-CTTGCGCATTCTGCCTCTC
13524406 CAGCTGGCTG
Statistics
Matches: 174, Mismatches: 34, Indels: 10
0.80 0.16 0.05
Matches are distributed among these distances:
158 52 0.30
159 119 0.68
160 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
CGGTAGCACGCAGAGGGGGATTGGGCCAATCCCCGCTTGCGCATTCTGCCTCTCTCGATCGGCTC
AGCGCCCACACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGACCC
AACCAGACTGAGGGTTATGACAGCGGGAC
Found at i:13524500 original size:26 final size:26
Alignment explanation
Indices: 13524450--13524502 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13524440 GTTGGCTTGG
* *
13524450 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13524476 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13524502 G
1 G
13524503 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13531402 original size:159 final size:158
Alignment explanation
Indices: 13531093--13531587 Score: 487
Period size: 159 Copynumber: 3.1 Consensus size: 158
13531083 CCCAGTCTAA
* * *** * * * * *
13531093 GCATATGGAGTTCATTCC-CAGTCTAAGATTGGATCGGACTGAGGGTTGTGGTAGTAGGATCGAC
1 GCATACGGAGTTCATTCCATAGTCTAAGACCAGACCGAACCGAGGGTTGTGGCAGCAGGATCGAC
** * * ** *
13531157 AGCACGTAGGGGGGACGGGGCAATCCCTAGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCC
66 AGCACGTAGGGGGGACGGACCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
* * *
13531222 CGTACGCCCGTTTCATGGGTTGGCTTAG
131 CGTACGCTCATTTCGTGGGTTGGCTTAG
* * * *
13531250 GCATAGGGAGTTCATTCCAT-TTCTAAGGCCCA-ATCGAACCGAGGGTTGTGGCAGCAGGA-CTG
1 GCATACGGAGTTCATTCCATAGTCTAA-GACCAGACCGAACCGAGGGTTGTGGCAGCAGGATC-G
* * * * * * *
13531312 GCAGCACGTAGAGGGGGATCGGATCGATCCCCGGCTTGCGTATTATGCCTCTCTGGCCGGCTCAG
64 ACAGCACGTAG-GGGGGA-CGGACCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
* *
13531377 CGCCCGTACGCTCATTTCGTTGGTTGACTTAG
127 CGCCCGTACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * *
13531409 GCATACAGAGTTCATTCC-TAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGTATCGAC
1 GCATACGGAGTTCATTCCATAGTCTAAGACCAGACCGAACCGAGGGTTGTGGCAGCAGGATCGAC
* * *
13531473 AGCACGCAGGGGGGGACTGGACCGATCCCCAGCTTGCGCATTCTGCCTTTCCGGCCGACTGAGCG
66 AGCACGTA-GGGGGGAC-GGACCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
*
13531538 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
129 CCCGTACGCTCATTTCGTGGGTTGGCTTAG
* *
13531568 GCATATGGAGTCCATTCCAT
1 GCATACGGAGTTCATTCCAT
13531588 GTTTAAGCAT
Statistics
Matches: 271, Mismatches: 56, Indels: 19
0.78 0.16 0.05
Matches are distributed among these distances:
156 1 0.00
157 56 0.21
158 12 0.04
159 199 0.73
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATAGTCTAAGACCAGACCGAACCGAGGGTTGTGGCAGCAGGATCGAC
AGCACGTAGGGGGGACGGACCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
CGTACGCTCATTTCGTGGGTTGGCTTAG
Found at i:13531965 original size:26 final size:26
Alignment explanation
Indices: 13531935--13531987 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13531925 ATTGACTTAG
13531935 GCATAC-GAAGTTCATCCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
* *
13531961 GCATACAGAGTTCATTCTCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
13531987 G
1 G
13531988 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:13532675 original size:26 final size:26
Alignment explanation
Indices: 13532639--13532688 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
13532629 GTTGACTTAG
13532639 GCATACAGAGTTCATACCTAGTCTAA
1 GCATACAGAGTTCATACCTAGTCTAA
* * *
13532665 GCATACGGAGTTCATTCTTAGTCT
1 GCATACAGAGTTCATACCTAGTCT
13532689 GAGATCAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATACCTAGTCTAA
Found at i:13533170 original size:26 final size:26
Alignment explanation
Indices: 13533141--13533191 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13533131 GTTGGCTTAG
13533141 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
13533167 GCATACGGAGTTCATTCTCAGTCTA
1 GCATACGGAGTTCATTCTCAGTCTA
13533192 TGATCGGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:13533545 original size:26 final size:26
Alignment explanation
Indices: 13533509--13533561 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13533499 GTTGACTTAG
*
13533509 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13533535 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13533561 G
1 G
13533562 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13533911 original size:367 final size:355
Alignment explanation
Indices: 13533280--13534122 Score: 1001
Period size: 367 Copynumber: 2.3 Consensus size: 355
13533270 CTGGACTTAC
* * * *
13533280 GCATTCTGCCTC-TCTGACCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGTATAC
1 GCATTCTGCCTCTTC-GACCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
* * *
13533344 GGAGTTCATTCCATGTATAAGCACCAGCCGGACCGAGGGTTGTGGTTGCAGGACCGACAGCAGGA
65 GGAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGGTTGTGGTAGCAGGACCGACAGCAGGA
* * * * * *
13533409 TCGACAGCACGCAGAGGGTGATCGGGTTGATCCCTAACATGCACCTTATGCCTCTCCAGCCGACT
130 TCGACAGCACGCAGAGGGAGACCAGGCTAATCCCTAACATGCACATTATGCCTCTCCAGCCGACT
* * * * *
13533474 GAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
195 GAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACCGAGTTCATCCCCAATCTAAGCAT
* * *
13533539 ACAGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGACAGTAGGATCGATAGCAC
260 ACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCAC
* * * * *
13533604 GCAGGGGGGACCGAGCCGATCCCCTGCCTGT
325 GCAAGAGGAACCGAGCCAATCCCCGGCCTGT
* *
13533635 GCATTCTGCCTCTTCGACCGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTCGGCATAGG
1 GCATTCTGCCTCTTCGACCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
* ** * *
13533700 GAGTTCATT-CATGTCTAAGCTCCAGTTAGACCAAGGGTTGTGGTAGCAGGACCGACAGCGGGAT
66 GAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGGTTGTGGTAGCAGGACCGACAGCAGGAT
* *
13533764 CGACAGCACGTAGAGGGAGACCAGGCTAAT-CCTCAGCATGCACATTATGCCTCTCCGACTAGCC
131 CGACAGCACGCAGAGGGAGACCAGGCTAATCCCT-AACATGCACATTATGCCTCT-C--C-AG--
* *
13533828 TCTCTAGTCGGCTGAATGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACCGAGTTCATCC
189 ---C----CGACTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACCGAGTTCATCC
* ** ** *
13533893 CCAATCTAAGCGTACAGAGTTCATTCCTTGTCTAAGATTGGACTGGACCGAGGGTTGTGACAGCA
247 CCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCA
* * * *
13533958 GGATCGACAGCACGCAAGAGGAACCGCGCTAATCCTCGGCTTGT
312 GGATCGACAGCACGCAAGAGGAACCGAGCCAATCCCCGGCCTGT
* * * * * * **
13534002 GCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCAAGCCCATTCCACGGGTTGGCTTAGGCATAGG
1 GCATTCTGCCTCTTCGACCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
* *
13534067 GAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGTAGC-GAGACCGA
66 GAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGGTTGTGGTAGCAG-GACCGA
13534123 TAGTACGTAG
Statistics
Matches: 409, Mismatches: 62, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
353 3 0.01
354 89 0.22
355 66 0.16
356 2 0.00
357 1 0.00
358 2 0.00
363 1 0.00
367 206 0.50
368 39 0.10
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (355 bp):
GCATTCTGCCTCTTCGACCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGGTTGTGGTAGCAGGACCGACAGCAGGAT
CGACAGCACGCAGAGGGAGACCAGGCTAATCCCTAACATGCACATTATGCCTCTCCAGCCGACTG
AACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACCGAGTTCATCCCCAATCTAAGCATA
CAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACG
CAAGAGGAACCGAGCCAATCCCCGGCCTGT
Found at i:13534379 original size:158 final size:157
Alignment explanation
Indices: 13533909--13534403 Score: 478
Period size: 158 Copynumber: 3.1 Consensus size: 157
13533899 TAAGCGTACA
* ** * *
13533909 GAGTTCATTCCTTGTCTAAGATTGGACTGGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCATGTCTAAGATTGGACCAGACCGAGGGTTGTGACAG-AGGATCGATAGCACGTA
* * * * ** * *
13533974 -AGAGGAACCGCG-CTAATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCAA
65 GGGAGG-ACCGGGTC-GATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCTGCAC
* * ** *
13534037 GCCCATTCCACGGGTTGGCTTAGGCATAGG
128 GCTCATTTCGTGGGTTGGCTTAGGCATACG
**** * ** * * *
13534067 GAGTTCATTCCATGTCTAAG-CCCCAGCCAGATCGAGGGTTGTGGTAGCGAGACCGATAGTACGT
1 GAGTTCATTCCATGTCTAAGATTGGA-CCAGACCGAGGGTTGTGACAGAG-GATCGATAGCACGT
* * ** * * * * * *
13534131 AGAGGGGGACCAGGTCGATCCCCAACTTACACATTATGCCTCTTCGATCGGCTCAGCTCCTGAAC
64 AG-GGAGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCTGCAC
* *
13534196 GCTCGTTTCGTGGGTTGACTTAGGCATACG
128 GCTCATTTCGTGGGTTGGCTTAGGCATACG
*
13534226 GAGTTCATTCCCA-GTCTAAGATTGGACCAGACCGAGGGTTGCGACAGTAGGATCGATAGCACGT
1 GAGTTCATT-CCATGTCTAAGATTGGACCAGACCGAGGGTTGTGACAG-AGGATCGATAGCACGT
* * *
13534290 AGGGAGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCC-AGTCGACAGAGCGCTTGCAC
64 AGGGAGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGA-TCGGCTGAGCGCCTGCAC
13534354 GCTCATTTCGTGGGTTGGCTTAGGCATACG
128 GCTCATTTCGTGGGTTGGCTTAGGCATACG
13534384 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
13534404 CATATGGAGT
Statistics
Matches: 261, Mismatches: 66, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
157 6 0.02
158 137 0.52
159 109 0.42
160 9 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GAGTTCATTCCATGTCTAAGATTGGACCAGACCGAGGGTTGTGACAGAGGATCGATAGCACGTAG
GGAGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCTGCACGCT
CATTTCGTGGGTTGGCTTAGGCATACG
Found at i:13534413 original size:26 final size:26
Alignment explanation
Indices: 13534377--13534429 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13534367 GTTGGCTTAG
13534377 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13534403 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13534429 G
1 G
13534430 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13534540 original size:13 final size:13
Alignment explanation
Indices: 13534522--13534547 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13534512 TGCGCATTCT
13534522 GCCTCTCCGACCG
1 GCCTCTCCGACCG
13534535 GCCTCTCCGACCG
1 GCCTCTCCGACCG
13534548 ACTGAGCACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.54, G:0.23, T:0.15
Consensus pattern (13 bp):
GCCTCTCCGACCG
Found at i:13534622 original size:26 final size:26
Alignment explanation
Indices: 13534586--13534638 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13534576 GTTGAATTAG
13534586 GCATATAGAGTTAATCCCCAGTCTAA
1 GCATATAGAGTTAATCCCCAGTCTAA
* * *
13534612 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTAATCCCCAGTCTAA
13534638 G
1 G
13534639 ATCGGACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATAGAGTTAATCCCCAGTCTAA
Found at i:13534966 original size:26 final size:26
Alignment explanation
Indices: 13534930--13534980 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13534920 TTGGCCTAGG
*
13534930 CATACGGAGTTCATTCCATGTCTAAA
1 CATACGGAGTTCATTCCAAGTCTAAA
*
13534956 CATACGGAGTTGATTCCAAGTCTAA
1 CATACGGAGTTCATTCCAAGTCTAA
13534981 GAGTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCAAGTCTAAA
Found at i:13535688 original size:26 final size:26
Alignment explanation
Indices: 13535658--13535708 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13535648 GTTGACTTAG
* *
13535658 GCATACTGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
13535684 GCATACAGAGTTCATTCCCAATCTA
1 GCATACAGAGTTCATCCCCAATCTA
13535709 TGATTGGACA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:13536043 original size:26 final size:27
Alignment explanation
Indices: 13536008--13536062 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
13535998 CGTGGGTTGA
*
13536008 CTTAGGCATACGGAGTTCATCCCCAGT
1 CTTAGGCATACAGAGTTCATCCCCAGT
*
13536035 CTTA-GCATACAGAGTTCATTCCCAGT
1 CTTAGGCATACAGAGTTCATCCCCAGT
13536061 CT
1 CT
13536063 AAGATCAGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (27 bp):
CTTAGGCATACAGAGTTCATCCCCAGT
Found at i:13536392 original size:26 final size:26
Alignment explanation
Indices: 13536355--13536407 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13536345 GTTAGCTTAG
13536355 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
* *
13536381 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
13536407 G
1 G
13536408 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:13537104 original size:26 final size:26
Alignment explanation
Indices: 13537067--13537119 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13537057 GTTGACTTAG
*
13537067 GCATACAGAGTTCATCCCCATTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13537093 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
13537119 G
1 G
13537120 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13537420 original size:159 final size:159
Alignment explanation
Indices: 13537093--13537586 Score: 539
Period size: 159 Copynumber: 3.1 Consensus size: 159
13537083 CCCATTCTAA
* * * *
13537093 GCATACGAAGTTCATTCCCAGTCTAAG-ATCGAACCGGATCGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCA-CCAACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * *
13537157 AGCACGTA-AGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTACCTCTCCGGCCGACTGAGCA
65 AGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCA
** * *
13537221 CCCGCACGCCCGTTTCATTGATTGGCTTAG
130 CCCGCACGTTCGTTTCATGGGTTGGCTTAG
* * * *
13537251 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGCACCAACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * *
13537315 AGCACGTAGAGGGGGACCAGACCGTTCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCG
65 AGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCA
* * *
13537380 CCCGCACGTTCATTTCGTGGGTTGACTTAG
130 CCCGCACGTTCGTTTCATGGGTTGGCTTAG
* * * * *
13537410 GCATACGGAGTTCATTCCCAGTCTAAG-ATCATATCGGACTGAGGGTTGCGGTAGCAGGATAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCACCA-ACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * ** * *
13537474 AGCATGCAG-GGGGTGATCGGGTCGATCCCCGACTTATGCATTCTGCCTCTTCGGTTGGCTGAGC
65 AGCACGTAGAGGGG-GACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
* *
13537538 ACCTGCACGTTCGTTTCTTGGGTTGGCTTAG
129 ACCCGCACGTTCGTTTCATGGGTTGGCTTAG
*
13537569 GCATACGGAGTTTATTCC
1 GCATACGGAGTTCATTCC
13537587 ATGTGTAAGC
Statistics
Matches: 275, Mismatches: 55, Indels: 11
0.81 0.16 0.03
Matches are distributed among these distances:
157 3 0.01
158 65 0.24
159 204 0.74
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCACCAACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCAC
CCGCACGTTCGTTTCATGGGTTGGCTTAG
Found at i:13537880 original size:292 final size:292
Alignment explanation
Indices: 13537340--13537914 Score: 700
Period size: 292 Copynumber: 2.0 Consensus size: 292
13537330 ACCAGACCGT
* * ** * * *
13537340 TCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGTTCATTTCGTGGGTTGA
1 TCCCCGGCTTACGCATTATGCCTCTCCGCTCGGCTCAGCAACCACACGCTCATTTCATGGGTTGA
* * * * *
13537405 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATATCGGACTGAGGGTTGCGGTAGCAGGAT
66 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCATACCAGACCGAGGGTTGCGGTAGAAGGAT
* * * * * *
13537470 AGACAGCATGCAGGGGGTGATCGGGTCGATCCCCGACTTATGCATTCTGCCTCTTCGGTTGGCTG
131 AGACAGCACGCAGGAGGTGATCGGGTCGATCCCCGACATACGCATTCTGCCTCTCCGGCTGGCTG
* * *
13537535 AGCACCTGCACGTTCGTTTCTTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTGTAAGCATA
196 AGCACCTGCACGTTCGTTTCTTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATA
13537600 CAGAGTTCATTCCCAATCTAAGATCGAGCCGA
261 CAGAGTTCATTCCCAATCTAAGATCGAGCCGA
* * *
13537632 TCCCCGGCTTACGTATTATGCCTCTCCAGCT-GGCTGAGCAACCACACGCTCGTTTCATGGGTTG
1 TCCCCGGCTTACGCATTATGCCTCTCC-GCTCGGCTCAGCAACCACACGCTCATTTCATGGGTTG
* * * *
13537696 GCTTAGGCATGCGGAGTTCATT-CCATGTCTAAGGCCCA-ACCAGACCGAGGGTTGTGGTAGAAG
65 ACTTAGGCATACGGAGTTCATTCCCA-GTCTAA-GACCATACCAGACCGAGGGTTGCGGTAGAAG
* * * * *
13537759 GACT-GGCAGCACGTAGAGAGG-GATCGGGTCGATCCTCGGCATGCGCATTCTGCCTCTCCGGCT
128 GA-TAGACAGCACGCAG-GAGGTGATCGGGTCGATCCCCGACATACGCATTCTGCCTCTCCGGCT
13537822 GGCTGAGCGACC-GCACGCTT-GTTT-TGTGGGTTGGCTTCA-GCATACAGAGTTCATTCCATGT
191 GGCTGAGC-ACCTGCACG-TTCGTTTCT-TGGGTTGGCTT-AGGCATACAGAGTTCATTCCATGT
*
13537883 CTAAGCATACAGAGTTCATTCCCAGTCTAAGA
252 CTAAGCATACAGAGTTCATTCCCAATCTAAGA
13537915 GTTTGAGCCA
Statistics
Matches: 240, Mismatches: 34, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
291 4 0.02
292 221 0.92
293 15 0.06
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.27
Consensus pattern (292 bp):
TCCCCGGCTTACGCATTATGCCTCTCCGCTCGGCTCAGCAACCACACGCTCATTTCATGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCATACCAGACCGAGGGTTGCGGTAGAAGGAT
AGACAGCACGCAGGAGGTGATCGGGTCGATCCCCGACATACGCATTCTGCCTCTCCGGCTGGCTG
AGCACCTGCACGTTCGTTTCTTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATA
CAGAGTTCATTCCCAATCTAAGATCGAGCCGA
Found at i:13537896 original size:26 final size:26
Alignment explanation
Indices: 13537860--13537913 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
13537850 GGTTGGCTTC
13537860 AGCATACAGAGTTCATT-CCATGTCTA
1 AGCATACAGAGTTCATTCCCA-GTCTA
13537886 AGCATACAGAGTTCATTCCCAGTCTA
1 AGCATACAGAGTTCATTCCCAGTCTA
13537912 AG
1 AG
13537914 AGTTTGAGCC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (26 bp):
AGCATACAGAGTTCATTCCCAGTCTA
Found at i:13539090 original size:26 final size:25
Alignment explanation
Indices: 13539054--13539105 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
13539044 GTTGGCTTAG
13539054 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
13539080 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
13539105 G
1 G
13539106 ATCAGACTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:13539454 original size:159 final size:160
Alignment explanation
Indices: 13539217--13539599 Score: 409
Period size: 159 Copynumber: 2.4 Consensus size: 160
13539207 GCCGGTTGAG
* * * * *
13539217 CACCCGCATGCCCGTTTCGTGGGTTGGCTTAGGTATAGGGAGTTCA-TTCCATGTCTAAGCCCCA
1 CACCCGCATGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTTCCATATCGAAGCACCA
* ** * * *
13539281 ACCGGACTGAGGGTTGTGGCAACGGGATCGACAGCATGCAGA-AGGGGACCGAATCGATCCCCGG
66 ACCGGACCGAGGGTTGCAGCAACAGGATCGACAGCATGCAGAGA-GAGACCGAACCGATCCCCGG
13539345 CTTGTGCATTATGCCTC-TCATGCCGGCTCAA
130 CTTGTGCATTATGCCTCTTCA-GCCGGCTCAA
* * * *
13539376 CACCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCA-ATCGAAG-ATCA
1 CACCCGCATGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTTCCATATCGAAGCACCA
** * ** **
13539439 GACCGGACCGAGGGTTGCAGCAGTAGGATCGACAGCATGCAGTGAGAGACCGGGCCGATCCTTGG
66 -ACCGGACCGAGGGTTGCAGCAACAGGATCGACAGCATGCAGAGAGAGACCGAACCGATCCCCGG
* * *
13539504 TTTGTGCATTCTGCCTCTTCAGCCGGCTGAA
130 CTTGTGCATTATGCCTCTTCAGCCGGCTCAA
* * *
13539535 CACCCGCACGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCA-TTCCATGTCTAAGC
1 CA--C-C-CGCATGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTTCCATATCGAAGC
13539599 A
62 A
13539600 TAAAGAGTTC
Statistics
Matches: 183, Mismatches: 31, Indels: 15
0.80 0.14 0.07
Matches are distributed among these distances:
158 2 0.01
159 121 0.66
160 9 0.05
161 1 0.01
162 6 0.03
163 43 0.23
164 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (160 bp):
CACCCGCATGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTTCCATATCGAAGCACCA
ACCGGACCGAGGGTTGCAGCAACAGGATCGACAGCATGCAGAGAGAGACCGAACCGATCCCCGGC
TTGTGCATTATGCCTCTTCAGCCGGCTCAA
Found at i:13539979 original size:26 final size:26
Alignment explanation
Indices: 13539950--13540002 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13539940 GTTGACTTAT
*
13539950 GCATACGAAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
13539976 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13540002 G
1 G
13540003 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13540307 original size:159 final size:158
Alignment explanation
Indices: 13539983--13540478 Score: 425
Period size: 159 Copynumber: 3.1 Consensus size: 158
13539973 TAAGCATATG
**** * * *
13539983 GAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCA-ACAGCAGGATCGACAGCACGC
1 GAGTTCATT-CCAGTCTAAGCCCAGACCGGACCGAGGGTTG-AGGCAGCAGGACCGACAGCACGC
* * * * * * * ** * *
13540047 --AGGGGGA-CTGGGCCAATCC-CCAGCTTGCGCATTCTGCGTCTTCGGTCGGTTGAGCACCCGC
64 AGAGGGGGATC-GGGTCAGTCCTCGA-CTTGCGCATTATGCCTCTCCGATCGACTCAGCACCCGA
* * * **
13540108 ACTCCCGTTTCATGGGTTGGCTTAGGCATAGG
127 ACGCTCGTTTCATGGGTTGACTTAGGCATACA
* *
13540140 GAGTTCATTCCATGTCTAAGCCCTAG-CCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCATGC
1 GAGTTCATTCCA-GTCTAAGCCC-AGACCGGACCGAGGGTTGAGGCAGCAGGACCGACAGCACGC
* * * * *
13540204 AGAGGGGGATTAC-GTTGA-TCCTCGACTTGCGTATTATGCCTCTCCGA-CTGGCTCAGCACCTG
64 AGAGGGGGA-T-CGGGTCAGTCCTCGACTTGCGCATTATGCCTCTCCGATC-GACTCAGCACCCG
* *
13540266 AATGCTCGTTTCATGGGTTGACTTAGGTATACA
126 AACGCTCGTTTCATGGGTTGACTTAGGCATACA
* ** * * **
13540299 GAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGAGGTAGCAGGATTGACAGCACGCA
1 GAGTTCATT-CCAGTCTAAGCCCAGACCGGACCGAGGGTTGAGGCAGCAGGACCGACAGCACGCA
** * * *
13540364 TCGGGGGATCGGGTCAGTCCTCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCCGCACG
65 GAGGGGGATCGGGTCAGTCCTCGACTTGCGCATTATGCCTCTCCGATCGACTCAGCACCCGAACG
13540429 CTCGTTTCATGGGTTGACTTAGGCATACA
130 CTCGTTTCATGGGTTGACTTAGGCATACA
*
13540458 GAGTTCATCCCCAGTCTAAGC
1 GAGTTCAT-TCCAGTCTAAGC
13540479 ATACGGAGTT
Statistics
Matches: 270, Mismatches: 53, Indels: 30
0.76 0.15 0.08
Matches are distributed among these distances:
156 3 0.01
157 49 0.18
158 7 0.03
159 202 0.75
160 8 0.03
162 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCAGTCTAAGCCCAGACCGGACCGAGGGTTGAGGCAGCAGGACCGACAGCACGCAG
AGGGGGATCGGGTCAGTCCTCGACTTGCGCATTATGCCTCTCCGATCGACTCAGCACCCGAACGC
TCGTTTCATGGGTTGACTTAGGCATACA
Found at i:13540481 original size:26 final size:26
Alignment explanation
Indices: 13540451--13540503 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13540441 GTTGACTTAG
13540451 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
13540477 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13540503 G
1 G
13540504 ATCGAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13540628 original size:184 final size:184
Alignment explanation
Indices: 13540294--13540662 Score: 420
Period size: 184 Copynumber: 2.0 Consensus size: 184
13540284 TGACTTAGGT
* * * *
13540294 ATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGAGGTAGCAGGATTGACAGC
1 ATACAGAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTGAGGCAGCAGGATCGACAGC
* * *
13540359 ACGCATCGGGGGATCGGGTCAGTCCTCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCC
66 ACG-ATAGGGGGATCGGGTCAGTCCCCGACTTGCGCATTCTGCCCCTCCGATCGACTGAGCACCC
* *
13540424 GCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGC
130 GCACGCCCGTTTCATGGGTTGACTGAGGCATACAGAGTTCAT-CCCATGTCTAAGC
* * * * * * *
13540479 ATACGGAGTTCTTTCCCAGTCTAAGATCGAACTAGACCGAGGGTTGCGGCAGTAGTATCGACAGC
1 ATACAGAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTGAGGCAGCAGGATCGACAGC
* ** * **
13540544 ACG-TAGAGGGGATCGGGTC-GATCCCCGACTTGCGCTTTCTGCCCCTTTGGTCGGTTGAGCACC
66 ACGATAG-GGGGATCGGGTCAG-TCCCCGACTTGCGCATTCTGCCCCTCCGATCGACTGAGCACC
* ** * ** *
13540607 CGCATGCCCGTTTTGTGGGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGC
129 CGCACGCCCGTTTCATGGGTTGACTGAGGCATACAGAGTTCATCCCATGTCTAAGC
13540663 CCCAGCCGAT
Statistics
Matches: 152, Mismatches: 29, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
183 6 0.04
184 89 0.59
185 57 0.38
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (184 bp):
ATACAGAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTGAGGCAGCAGGATCGACAGC
ACGATAGGGGGATCGGGTCAGTCCCCGACTTGCGCATTCTGCCCCTCCGATCGACTGAGCACCCG
CACGCCCGTTTCATGGGTTGACTGAGGCATACAGAGTTCATCCCATGTCTAAGC
Found at i:13540713 original size:158 final size:158
Alignment explanation
Indices: 13540515--13540978 Score: 624
Period size: 158 Copynumber: 2.9 Consensus size: 158
13540505 TCGAACTAGA
* * * * * *
13540515 CCGAGGGTTGCGGCAGTAGTATCGACAGCACGTAGA-GGGGATCGGGTCGATCCCCGACTTGCGC
1 CCGAGGGTTGTGGCAGTGGGATCGACAGCAC-CAGAGGGGGATCGGGTCGATCCTCGGCTTGCGC
* * * * * ** * ** * * *
13540579 TTTCTGCCCCTTTGGTCGGTTGAGCACCCGCATGCCCGTTTTGTGGGTTGGCTGAGGCATAGGGA
65 ATTCTGCCTCTTCGATCGGCTGAGTGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGA
13540644 GTTCATTCCATGTCTAAGCCCCAGCCGAT
130 GTTCATTCCATGTCTAAGCCCCAGCCGAT
* * * *
13540673 CTGAGGGTTGTGGCAGCGGGATCGACAGCACCAGAGGGGGACCGGGTCGATCCTCGGCTTACGCA
1 CCGAGGGTTGTGGCAGTGGGATCGACAGCACCAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCA
* *
13540738 TTCTGCCTCTCCGATCGGCTGAGTGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAG
66 TTCTGCCTCTTCGATCGGCTGAGTGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAG
13540803 TTCATTCCATGTCTAAGCCCCAGCCGAT
131 TTCATTCCATGTCTAAGCCCCAGCCGAT
* *
13540831 CCGAGGGTTGTGGCAATGGGACCGACAGCACCAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCA
1 CCGAGGGTTGTGGCAGTGGGATCGACAGCACCAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCA
* * * * *
13540896 TTCTACCTCTTCGACCGGCTGAGTGCCCACACACTTGTTTCGTAGGTTGGCTTAGGCATACGGAG
66 TTCTGCCTCTTCGATCGGCTGAGTGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAG
13540961 TTCATTCCATGTCTAAGC
131 TTCATTCCATGTCTAAGC
13540979 ATACGGAGTT
Statistics
Matches: 267, Mismatches: 38, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
157 3 0.01
158 264 0.99
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (158 bp):
CCGAGGGTTGTGGCAGTGGGATCGACAGCACCAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCA
TTCTGCCTCTTCGATCGGCTGAGTGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCCCCAGCCGAT
Found at i:13540987 original size:26 final size:26
Alignment explanation
Indices: 13540951--13541003 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13540941 GTTGGCTTAG
13540951 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13540977 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13541003 G
1 G
13541004 AGTGTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13542081 original size:158 final size:157
Alignment explanation
Indices: 13541700--13542199 Score: 512
Period size: 158 Copynumber: 3.2 Consensus size: 157
13541690 TCCAATCTAA
* * *
13541700 GCATAC-GAAGTTCATTCCCA-GTCTAAGATCGGATCAGATCGAGGGTTACGACAGTAAGATCGA
1 GCATACAG-AGTTCATT-CCATGTCTAAGATCGGATCGGATCGAGGGTTGCG-CAGTAGGATCGA
* *
13541763 CAGCACGCAGGAGGGACCGAG-TCGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGTTGAGC
63 CAGCACGCAGGGGGGACCGGGCT-GATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGTTGAGC
* * *
13541827 GCCCGTACGCCCATTTCGTGGGTTGGCTTAG
127 GCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
** * * ** * **
13541858 GCATAGGGAGCTCATT-CATGTCTAAG-CCCCAGTCGGACCGAGGGATGTG-GCAGCGGGATCGA
1 GCATACAGAGTTCATTCCATGTCTAAGATCGGA-TCGGATCGAGGG-T-TGCGCAGTAGGATCGA
* * * * * * * *
13541920 CAGCATGCAGAGGGGGACCGGGCTGATCCCCGGCTTACG-ATTATGCCTCTTCGATCGGCTCAGT
63 CAGCACGCAG-GGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGTTGAGC
*
13541984 GCCCGAACGCTCGTTTCGTGGGTTGACTTAG
127 GCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
*
13542015 GCATACAGAGTTCATTCCCTGTCTAAGATCGGATCGGATCGAGGGTTGCAGCAGTAGGATCGACA
1 GCATACAGAGTTCATTCCATGTCTAAGATCGGATCGGATCGAGGGTTGC-GCAGTAGGATCGACA
* * * * * ** *
13542080 GCACGTAGGGGGGACCAGGGCAG-CCCCCAGCTTGGGCATTCTACCTCTCCGGCCAGTTGAGCGC
65 GCACGCAGGGGGGACC-GGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGTTGAGCGC
* * *
13542144 CCGCACGCTCGTTTCATGGGTTGGCTTAA
129 CCGAACGCTCGTTTCGTGGGTTGGCTTAG
13542173 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
13542200 CATACGGAGT
Statistics
Matches: 273, Mismatches: 56, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
156 6 0.02
157 112 0.41
158 150 0.55
159 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCGGATCGGATCGAGGGTTGCGCAGTAGGATCGACAG
CACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGTTGAGCGCCC
GAACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13542223 original size:26 final size:26
Alignment explanation
Indices: 13542170--13542225 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
13542160 TGGGTTGGCT
*
13542170 TAAGCATACAGAGTTCATTCCATGTC
1 TAAGCATACAGAGTTCATTCCATATC
*
13542196 TAAGCATACGGAGTTCATTCCCA-ATC
1 TAAGCATACAGAGTTCATT-CCATATC
13542222 TAAG
1 TAAG
13542226 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCATATC
Found at i:13542556 original size:26 final size:26
Alignment explanation
Indices: 13542526--13542581 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
13542516 TGGGTTGGCT
13542526 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
13542552 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
13542578 TAAG
1 TAAG
13542582 ATCGAATCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:13542693 original size:356 final size:355
Alignment explanation
Indices: 13541920--13542740 Score: 1040
Period size: 356 Copynumber: 2.3 Consensus size: 355
13541910 GCGGGATCGA
* * * ** * *
13541920 CAGCATGCAGAGGGGGACCGGGCTGATCCCCGGCTT--ACGATTATGCCTCTTCGATCGGCTCAG
1 CAGCACGCAGGGGGGGACCGGGCTGATCCCCGGCTTGCAC-ATTCTGCCTCCCCGGTCGGCTGAG
* * * * * * *
13541983 TGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAAGATCGGA
65 CGCCCGAACGCCCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGACCAGA
* * * * * *
13542048 TCGGATCGAGGGTTGCAGCAGTAGGATCGACAGCACGTAGGGGGGACCAGGGCAGCCCCCAGCTT
130 CCGGACCGAGGGATGCAGCAGCAGGATCGACAGCACATAGGGGGGACCAGGCCAGCCCCCAGCTT
*
13542113 GGGCATTCTACCTCTCCGGCCAGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAAGCATA
195 GGGCATTCTACCTCTCCGACCAGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAAGCATA
*
13542178 CAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCAAGG
260 CAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAATCGGACCAAGG
* * * *
13542243 GTTGCGGTCGCAGGACTAGCAGCAGGATCGG
325 GTTGCGGCCACAGGACTAGCAACAGGATCAG
* * * *
13542274 CAGCACGCAGGGGGGGATCGAGCTAATCCCCGGCTTGCACATTCTGCCTCCCC-GACTGGCTGAG
1 CAGCACGCAGGGGGGGACCGGGCTGATCCCCGGCTTGCACATTCTGCCTCCCCGGTC-GGCTGAG
* * ** *
13542338 CGCCCGTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
65 CGCCCGAACGCCCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG-ACCAG
* ** * * * *
13542403 -CCGGACCGATGGATGTGGTAGCGGGATCGATAGCACATAGAGGGGGACCAGGCCAGTCCCC-GA
129 ACCGGACCGAGGGATGCAGCAGCAGGATCGACAGCACATAG-GGGGGACCAGGCCAGCCCCCAG-
* *
13542466 CTTGGGCATTCTACCTCTCCGACCAGTTGAGCGGCCTCACGCTCGTTTCATGGGTTGGCTTAAGC
192 CTTGGGCATTCTACCTCTCCGACCAGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAAGC
* *
13542531 ATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCA
257 ATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAATCGGACCA
*
13542596 AGGGTTGCGGCCATAGGACTAGCAACAGGATCAG
322 AGGGTTGCGGCCACAGGACTAGCAACAGGATCAG
*
13542630 CAGCACGCAGGGGGGGACCGGGCTGATCCCCTGCTTGCACATTCTGCCTCCCCGGTCGGCTGAGC
1 CAGCACGCAGGGGGGGACCGGGCTGATCCCCGGCTTGCACATTCTGCCTCCCCGGTCGGCTGAGC
* * * * * * * ** *
13542695 ACTCGCACACTCGTTTCATGGGTTGACTGAGAAATACGGAGTTCAT
66 GCCCGAACGCCCATTTCATGGGTTGACTTAGGCATACAGAGTTCAT
13542741 CCCCAGTCTA
Statistics
Matches: 397, Mismatches: 63, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
354 32 0.08
355 96 0.24
356 267 0.67
357 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (355 bp):
CAGCACGCAGGGGGGGACCGGGCTGATCCCCGGCTTGCACATTCTGCCTCCCCGGTCGGCTGAGC
GCCCGAACGCCCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGACCAGAC
CGGACCGAGGGATGCAGCAGCAGGATCGACAGCACATAGGGGGGACCAGGCCAGCCCCCAGCTTG
GGCATTCTACCTCTCCGACCAGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAAGCATAC
AGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAATCGGACCAAGGG
TTGCGGCCACAGGACTAGCAACAGGATCAG
Found at i:13542758 original size:26 final size:26
Alignment explanation
Indices: 13542728--13542778 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13542718 TGACTGAGAA
*
13542728 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGAAGTTCATCCCCAGTCTAAGC
*
13542754 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
13542779 ATCTAATCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGC
Found at i:13543769 original size:26 final size:26
Alignment explanation
Indices: 13543740--13543792 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13543730 GTTGACTTAG
*
13543740 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
13543766 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13543792 G
1 G
13543793 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13544142 original size:159 final size:158
Alignment explanation
Indices: 13543896--13544266 Score: 334
Period size: 158 Copynumber: 2.3 Consensus size: 158
13543886 GCGGAGCACT
* * * * * ** * ***
13543896 CGCACGCCCG-TTCGTGGGTTGGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCAG
1 CGCACGCTCGTTTCATGGGATGACTTAGGCATACGGAGTTCATTCCATGTCTAAG-ATTGGATTG
* * * * ** * * * *
13543960 -ATTGAGGGTTGTGGTAGCGAGACCGGCAACACGTAGAGAGGGATCGAACCGATCCCTGGCTTGC
65 AATCGAGGGTTGCGATAGCAAGACCAACAACACGCAG-GAGGGATCGAACCGATCCCCGACTTCC
** * *
13544024 GTATTATGCCTTTTCGCCCGGCTCAGTGCC
129 ACATTATGCCTCTCCGCCCGGCTCAGTGCC
* * *
13544054 CGCATGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAGATTGGATTG
1 CGCACGCTCGTTTCATGGGATGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATTGGATTG
* * ** * *
13544118 AATCGAGGGTTGCGATAGCAAGACCAACAGCACGCAGGGGGGATCGGGCTGGTCCCCGACTTCCA
65 AATCGAGGGTTGCGATAGCAAGACCAACAACACGCAGGAGGGATCGAACCGATCCCCGACTTCCA
* * * *
13544183 CATTCTGCCTCTCCGGCCGGTTGAGTGCC
130 CATTATGCCTCTCCGCCCGGCTCAGTGCC
* *
13544212 CGCACGCTCGTTTCGTGGGATGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CGCACGCTCGTTTCATGGGATGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
13544267 CATACGGAGT
Statistics
Matches: 168, Mismatches: 41, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.02
158 98 0.58
159 64 0.38
160 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
CGCACGCTCGTTTCATGGGATGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATTGGATTGA
ATCGAGGGTTGCGATAGCAAGACCAACAACACGCAGGAGGGATCGAACCGATCCCCGACTTCCAC
ATTATGCCTCTCCGCCCGGCTCAGTGCC
Found at i:13544742 original size:158 final size:158
Alignment explanation
Indices: 13544326--13544946 Score: 532
Period size: 159 Copynumber: 3.8 Consensus size: 158
13544316 ACAGCAGGAC
* * * *
13544326 CAGCAGCA-AGATCGACAGCACGCAGGAGGGGACCGGACTGATCCCCGACTTGCACATTTTGCCT
1 CAGCAG-AGAGATCGACAGCACGCAGG-GGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCT
* * * * *
13544390 CT-TCGGCCGGCTGAGCGTCGACACGCCCATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTC
64 CTCT-GGCCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
* *
13544454 CATGTCTAAACCCCAATCGGACTGAGGGTTG
128 CATGTCTAAACCCCAATCAGACCGAGGGTTG
** * * * * * *
13544485 TGGCAGCGAGACCGACAGCACGCAGAGGGGGATCGAGCCGATCCCCGGCTTGTGCATTATGCCTC
1 CAGCAGAGAGATCGACAGCACGCAG-GGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTC
* * * * *
13544550 TCTGGCCGGTTTAGCGCCCACATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
65 TCTGGCCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CC
* **
13544615 A-GTCTAAGA-TCTTATCAGACCGAGGGTTG
129 ATGTCTAA-ACCCCAATCAGACCGAGGGTTG
* * * * * * *
13544644 CAGCA-ATAGGATCGATAGCACACAGGGGGGACCGGGTTGATCCTCGGCTTACGCATTCTGCCTC
1 CAGCAGAGA-GATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTC
* * * * *
13544708 TCTGGCCGGCTGAGCGGCCACACGCTCATTTCGTGTGTTGGCTTAGGCATACGAAGTTCCTTCTA
65 TCTGGCCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* * ** * *
13544773 TGTCTAAGCCCTAGCCGGACTGAGGGTTGTGGTAG
130 TGTCTAAACCCCAATCAGACCGA-GG--GT--T-G
* ** * *
13544808 CAGGACAGACAGCAGGATTGGTAGCACGCAGAGAGGGATCGGGCTGATCCCCGGCTTGCGCATTA
1 CA-G-CAG--AG-A-GATCGACAGCACGCAG-GGGGGACCGGGCTGATCCCCGGCTTGCGCATTA
* * * * *
13544873 TACCTTTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCACACGGAGTTC
59 TGCCTCTCTGGCCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
13544938 ATTCCATGT
124 ATTCCATGT
13544947 TTAAGCATAC
Statistics
Matches: 362, Mismatches: 79, Indels: 30
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 99 0.27
159 139 0.38
160 6 0.02
161 2 0.01
163 1 0.00
164 3 0.01
165 1 0.00
166 2 0.01
169 1 0.00
170 15 0.04
171 91 0.25
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
CAGCAGAGAGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCT
CTGGCCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
GTCTAAACCCCAATCAGACCGAGGGTTG
Found at i:13545256 original size:159 final size:159
Alignment explanation
Indices: 13545051--13545454 Score: 400
Period size: 159 Copynumber: 2.5 Consensus size: 159
13545041 CTCAGCATGC
* * * * * * * *
13545051 GCATTCTGCCTCTCTGACTGACTGAGCACCCGTACGCCCGTTTCGTGGGTTGACTTAGGCATAAG
1 GCATTATGCCTCTCCGACTGGCTCAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATAAG
* * * * *
13545116 GAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGCA
66 GAGTTCATTCCATGTCTAAGCCCAAACCGGACCGAGGGTTGCGACAGCAGGACTGGCAGCACGCA
*
13545181 GAAG-GGGACCAAGCCGATCCCCGGCTTGA
131 -AAGAGGGACCAAGCCGATCCCCGACTTGA
* * *
13545210 GCATTATGCCTCTTCGACTGGCTCAGGGCCAGCACGCTCGTTTCGTGGGTTGACTTATGCA-AAC
1 GCATTATGCCTCTCCGACTGGCTCAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATAA-
** * * **
13545274 GGAGTTCATTCCCA-GTCTAAGATCAAACCGGATCGAGGGTTGCGACAGCAGGATTGGCAGCATT
65 GGAGTTCATT-CCATGTCTAAGCCCAAACCGGACCGAGGGTTGCGACAGCAGGACTGGCAGCACG
* * * ** *
13545338 TATAGAGGGATCGCGCCGATCCCCGACTTGT
129 CAAAGAGGGACCAAGCCGATCCCCGACTTGA
* * * * * * * * * *
13545369 GCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGTACACTCATTTCGTAGGTTGGCTTAGGCATACG
1 GCATTATGCCTCTCCGACTGGCTCAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATAAG
*
13545434 GAGTTCATTCAATGTCTAAGC
66 GAGTTCATTCCATGTCTAAGC
13545455 ATACGGAGTT
Statistics
Matches: 196, Mismatches: 44, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
158 6 0.03
159 186 0.95
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
GCATTATGCCTCTCCGACTGGCTCAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATAAG
GAGTTCATTCCATGTCTAAGCCCAAACCGGACCGAGGGTTGCGACAGCAGGACTGGCAGCACGCA
AAGAGGGACCAAGCCGATCCCCGACTTGA
Found at i:13546202 original size:25 final size:26
Alignment explanation
Indices: 13546157--13546208 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
13546147 GTTGACTTAG
*
13546157 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGATCATCCCCAGTCTAA
*
13546183 GCATAC-GAGATCATTCCCAGTCTAA
1 GCATACAGAGATCATCCCCAGTCTAA
13546208 G
1 G
13546209 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGATCATCCCCAGTCTAA
Found at i:13546671 original size:26 final size:26
Alignment explanation
Indices: 13546640--13546692 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13546630 GTTGGCTTAG
*
13546640 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
13546666 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13546692 G
1 G
13546693 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13547047 original size:26 final size:26
Alignment explanation
Indices: 13547017--13547072 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
13547007 TGGGTTGACT
13547017 TAAGCATACGGAGTTCA-TCCCTAGTC
1 TAAGCATACGGAGTTCATTCCC-AGTC
13547043 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
13547069 TAAG
1 TAAG
13547073 ATCAGACCAG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:13547542 original size:158 final size:156
Alignment explanation
Indices: 13547045--13547535 Score: 476
Period size: 159 Copynumber: 3.1 Consensus size: 156
13547035 CCCTAGTCTA
*
13547045 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGAC
1 AGCATACGGAGTTCATTCCCAGTCT-AGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCAAC
* * * *
13547110 AGCACGCAGGGGGGACCGGGTCGAT-CCTAGGCTTGCACATTCTGCCTCTCCGGCCAGCTAAGCG
65 AGCACGCAGGGGGGACCGGGCCGATCCCCA-GCTTGCGCATTCTGCCTCTCCGGTCAGCTAAGCG
* * *
13547174 CCCACACGCCCGTTTTGTGGGTTGGCTT
129 CCCGCACGCTCGTTTCGTGGGTTGGCTT
* * * * * *
13547202 --CGTAGGGAGTTCATT-CCATGTCTA-ATCCCCAG-CCAGACCGAGGGTTGTGGCAGTGGGACC
1 AGCATACGGAGTTCATTCCCA-GTCTAGAT---CAGACCAGACCGAGGGTTGCGACAGTAGGATC
** * * * * * * * * *
13547262 AGTAGCACGCAGAGGGGGACCAGGCTGATCCCCTA-CTTACGCATTATGGCTCTTCGATCGGCTC
62 AACAGCACGCAG-GGGGGACCGGGCCGATCCCC-AGCTTGCGCATTCTGCCTCTCCGGTCAGCTA
*
13547326 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
125 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
* * * * * *
13547358 ATGCATACGAAATTCATTCCCAGTCTATGATCGGACCAGACTGAGGGTTGCGACAGCAAGATCAA
1 A-GCATACGGAGTTCATTCCCAGTCTA-GATCAGACCAGACCGAGGGTTGCGACAGTAGGATCAA
* * * * *
13547423 CAGCACGCAGTGGTGGACCGGGCCGATCCCCAGCTTGTGCATTCTTCCTCTCCGGTC-GATGAGC
64 CAGCACGCAG-GGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCAGCTAAGC
*
13547487 GCCCGCACGCTCATTTCGTGGGTTGGCTT
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTT
13547516 AGGCATACGGAGTTCATTCC
1 A-GCATACGGAGTTCATTCC
13547536 ATGTCTACGC
Statistics
Matches: 261, Mismatches: 58, Indels: 29
0.75 0.17 0.08
Matches are distributed among these distances:
153 2 0.01
154 4 0.02
155 50 0.19
156 64 0.25
157 2 0.01
158 53 0.20
159 81 0.31
160 3 0.01
161 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (156 bp):
AGCATACGGAGTTCATTCCCAGTCTAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCAACA
GCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCAGCTAAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTT
Found at i:13554549 original size:159 final size:158
Alignment explanation
Indices: 13554124--13554665 Score: 499
Period size: 159 Copynumber: 3.4 Consensus size: 158
13554114 TGCCTCTCTG
* * * *
13554124 GTCGG-TGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATAAGGAGTTCATTCCCA-AT
1 GTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATT-CCATGT
* * * * * * * * *
13554187 ATAAGATTGGACCAGACCGAGCGTTGAGGCAACAGGATCAACAGCATGCAG-GGGGGACCAGGCC
65 CTAAGATCGGACCAGA-CGAGGGTTGTGGCAGCAGGATCGATAGCATGCAGAGGGGGATCGGGCC
**
13554251 AATCCCCGACTGGCGCATTCTACCTCTCC-
129 AATCCCCGACTTTCGCATTCTACCTCTCCA
* * * * * *
13554280 GATCGGCTGAGCGCCCGTA-AGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATG
1 G-TCGGCTGAGCGCCCGCACA-CTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCATG
* ** * * * * * *
13554344 TCTAAG-CCCTAGCCAGACTGAGGGTTATGGCAGTAGGACCGGTAGCACGCAGAGGTGGATCGGG
64 TCTAAGATCGGA-CCAGAC-GAGGGTTGTGGCAGCAGGATCGATAGCATGCAGAGGGGGATCGGG
*** * *
13554408 TTGATCCCCGACTTTCGCATTATGCCTCTCCA
127 CCAATCCCCGACTTTCGCATTCTACCTCTCCA
* * *
13554440 GTCGGCTCAACGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCC-TAGT
1 GTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCAT-GT
* *
13554504 CTAAGATCGGACCGGATCGAGGGTTGTGGTAGCAGGATCGATAGCATGCA-AGGGGGATCGGGCC
65 CTAAGATCGGACCAGA-CGAGGGTTGTGGCAGCAGGATCGATAGCATGCAGAGGGGGATCGGGCC
* * *
13554568 AATCCCTGGCTTTCGCATTCCACCTCTCCA
129 AATCCCCGACTTTCGCATTCTACCTCTCCA
* * * * * * *
13554598 AT-AGCTGAGCACCCACACGCTTGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTC
1 GTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCATGTC
13554662 TAAG
66 TAAG
13554666 CATACGGAGT
Statistics
Matches: 301, Mismatches: 72, Indels: 25
0.76 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 63 0.21
158 115 0.38
159 117 0.39
160 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCATGTC
TAAGATCGGACCAGACGAGGGTTGTGGCAGCAGGATCGATAGCATGCAGAGGGGGATCGGGCCAA
TCCCCGACTTTCGCATTCTACCTCTCCA
Found at i:13555056 original size:26 final size:26
Alignment explanation
Indices: 13555018--13555069 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
13555008 GTTGACTTAG
* *
13555018 GCATACGATGTTCATCCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
* *
13555044 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
13555070 CATCGGACCG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.27
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:13555428 original size:158 final size:157
Alignment explanation
Indices: 13555077--13555458 Score: 466
Period size: 158 Copynumber: 2.4 Consensus size: 157
13555067 TAACATCGGA
* * * *
13555077 CCGGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGGGAGGATCGGGCCGATCCCCGACTT
1 CCGGACCGAGGGTTGTGGCAGC-GGATCGGTAGCACGCAGGGAGGATCGGGTCGATCCCCGGCTT
* * * ** * *
13555142 GCGCATTTTGCCTCTTTGGCCGGCTGAGCGCCCGCACACCCTTTTCATGGGTTGGCTTAGGCATA
65 ACGCATTCTACCTCTTCCGACGGATGAGCGCCCGCACACCCTTTTCATGGGTTGGCTTAGGCATA
13555207 GGGAGTTCATTCCATGTCTAAGCCCCAG
130 GGGAGTTCATTCCATGTCTAAGCCCCAG
* * * *
13555235 CTGGATCAAGGGTTGTGGCAGCGGGATCGATAGCACGCAGGGAGGATCGGGTCGATCCCCGGCTT
1 CCGGACCGAGGGTTGTGGCAGC-GGATCGGTAGCACGCAGGGAGGATCGGGTCGATCCCCGGCTT
**
13555300 ACGCATTCTACCTC-TCCGACGGATGAGCGCCCGCAC-GTCTGTTT-AGTGGGTTGGCTTAGGCA
65 ACGCATTCTACCTCTTCCGACGGATGAGCGCCCGCACACCCT-TTTCA-TGGGTTGGCTTAGGCA
13555362 TAGGGAGTTCATTCCATGTCTAAGCCCCCAG
128 TAGGGAGTTCATTCCATGTCTAAG-CCCCAG
* * * * *
13555393 CCGGACCGAGGGTTGTGGCAGCGTGACCGGCAGCACGTAGAGG-GGTACCGGGTCGATCCCTGGC
1 CCGGACCGAGGGTTGTGGCAGCG-GATCGGTAGCACGCAG-GGAGG-ATCGGGTCGATCCCCGGC
13555457 TT
63 TT
13555459 GCGTATTATG
Statistics
Matches: 191, Mismatches: 27, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
156 3 0.02
157 62 0.32
158 106 0.55
159 20 0.10
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.21
Consensus pattern (157 bp):
CCGGACCGAGGGTTGTGGCAGCGGATCGGTAGCACGCAGGGAGGATCGGGTCGATCCCCGGCTTA
CGCATTCTACCTCTTCCGACGGATGAGCGCCCGCACACCCTTTTCATGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAG
Found at i:13556434 original size:26 final size:26
Alignment explanation
Indices: 13556398--13556450 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13556388 GTTGACTTAG
13556398 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13556424 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13556450 G
1 G
13556451 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13556776 original size:159 final size:157
Alignment explanation
Indices: 13556476--13556916 Score: 397
Period size: 159 Copynumber: 2.8 Consensus size: 157
13556466 GGGTTACGAC
* *
13556476 AGCATGCAGGGGGATCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACC
1 AGCATGCAGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTCAGCACC
* * *
13556541 CGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCCGG
66 CGCACGCCCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCATCCGG
13556606 ACCGAGCGTTGTGGCAGCGGGACTAAT
131 ACCGAGCGTTGTGGCAGCGGGACTAAT
* * * * * *
13556633 AGCATGCAGAGGGGGATCGGGTCGATCCCCGACTTGTGCGTTCTGCCTTTTCGATCGGCTCAGCA
1 AGCATGC--AGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTCAGCA
* *** * * **
13556698 CCTGCACGCTGGTTTCTTGGGTTGACTTAGGCATACGAAGTTCATTCC-TAGTCTAAGATCGGAT
64 CCCGCACGCCCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCAT-GTCTAAG-CCCCAT
** * * ** * *
13556762 -CGGGTCGAGGGTTGTGGCTGCAAGA-TCGAC
127 CCGGACCGAGCGTTGTGGCAGCGGGACT-AAT
* * * * * * * * *
13556792 AGCACGCAGGGGGATCGGGTCGGTCCCTGGCTTGCACATTTTGCCTCTCCGATCGGCTGAG-AGC
1 AGCATGCAGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTCAGCA-C
* * *
13556856 CCGCACACACGCTCGTTTCGTGGGTTTG-CTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 CCG----CACGCCCATTTCGTGGG-TTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGC
13556917 ATACGAAGTT
Statistics
Matches: 229, Mismatches: 43, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
156 1 0.00
157 54 0.24
158 2 0.01
159 121 0.53
160 3 0.01
161 44 0.19
162 4 0.02
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.25
Consensus pattern (157 bp):
AGCATGCAGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTCAGCACC
CGCACGCCCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCATCCGG
ACCGAGCGTTGTGGCAGCGGGACTAAT
Found at i:13556940 original size:26 final size:26
Alignment explanation
Indices: 13556889--13556941 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13556879 GTTTGCTTAG
* * *
13556889 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCAGGACTAA
*
13556915 GCATACGAAGTTCATTCCCGGACTAA
1 GCATACGAAGTTCATTCCAGGACTAA
13556941 G
1 G
13556942 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAGGACTAA
Found at i:13558294 original size:329 final size:330
Alignment explanation
Indices: 13557586--13558294 Score: 740
Period size: 328 Copynumber: 2.2 Consensus size: 330
13557576 CAATGCTTGG
* * * * *
13557586 ACGCTTGTTTCGTGGGTTGACTTATGCATATGGAGTTCATT--ACTAGTCAAAGATCGGATCGGA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCACTAGTCTAAGATCAGATCGGA
* * * *
13557649 CCAAGGGTTGTGGCAGCAAGATCGACAACACCAGAGGGGATCGGACTGATCCCTGGCTTGCACAT
66 CCAAGGGTTGCGGCAGCAAGATCAACAACACCAGAGGGGATCGGACTGATCACTAGCTTGCACAT
* * *
13557714 TCTGCCTCTCCGACGGGCAGGGAGCCCGCACGCTCATTTCGTGGGTTGTCTTAGGCATACGGAGT
131 TCTGCCTCTCCGACCGGCAGAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
* * * * * **
13557779 TCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCAAGACCGGTAGCAGGATCGGT
196 TCATTCCATGTCTAAACCCCAGCCGGACCGAAGGTTGCGGCAGCAAGACCAGTAGCAGGATCGAC
* * * *
13557844 AGCACGCAGAGCGGGATCGAGCTGATCCCTGACTTGCTCATTATGCCTTTTCGATCGGCTGAGCG
261 AGCACGCAGAGCGGGACCGAGCTGATCCCAGACTTGCGCATTATGCCTTTTCGACCGGCTGAGCG
*
13557909 CCCAA
326 ACCAA
* * *
13557914 ACCCTCGTTTCATGGATTGACTTAGGCATACGGAGTTCA-TCC-CTAGTCTAAGATCAGATCGGA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCACTAGTCTAAGATCAGATCGGA
** * * * * **
13557977 CTGAGGGTTGCGGCAGCATGATCAACAGCACGCAG-GGGG-TCCTGGGCTGGTCACTAGCTTGTG
66 CCAAGGGTTGCGGCAGCAAGATCAACAACAC-CAGAGGGGAT-C-GGACTGATCACTAGCTTGCA
* * * * * * *
13558040 CATTCTGCCTCTCTGGCCGGCTGAGCGCTCTCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
128 CATTCTGCCTCTCCGACCGGCAGAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
** * * * * * * *
13558105 AGTTCATTCC-TAGTCTAAA-ATCGGATCGGACCGAAGGTTGCGGCAGTAGGATCAGTAGTATGA
193 AGTTCATTCCAT-GTCTAAACCCCAG-CCGGACCGAAGGTTGCGGCAGCAAGACCAGTAGCAGGA
* * * *
13558168 TCGACAGCATGCAG-GGGGGACCGAGCTGATCCTCAG-CTTGCGCATTCTGCCTCTTT-GGCCGG
256 TCGACAGCACGCAGAGCGGGACCGAGCTGATCC-CAGACTTGCGCATTATGCCT-TTTCGACCGG
* **
13558230 TTGAGCGACCGC
319 CTGAGCGACCAA
*
13558242 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACT-GTCTAAG
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCACTAGTCTAAG
13558295 CATACGGAGT
Statistics
Matches: 308, Mismatches: 62, Indels: 21
0.79 0.16 0.05
Matches are distributed among these distances:
327 2 0.01
328 162 0.53
329 142 0.46
330 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (330 bp):
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCACTAGTCTAAGATCAGATCGGA
CCAAGGGTTGCGGCAGCAAGATCAACAACACCAGAGGGGATCGGACTGATCACTAGCTTGCACAT
TCTGCCTCTCCGACCGGCAGAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAACCCCAGCCGGACCGAAGGTTGCGGCAGCAAGACCAGTAGCAGGATCGAC
AGCACGCAGAGCGGGACCGAGCTGATCCCAGACTTGCGCATTATGCCTTTTCGACCGGCTGAGCG
ACCAA
Found at i:13558305 original size:27 final size:26
Alignment explanation
Indices: 13558267--13558320 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 26
13558257 GTTGGCTTAG
*
13558267 GCATACGGAGTTCATTCCACTGTCTAA
1 GCATACGGAGTTCATTCCA-TGCCTAA
13558294 GCATACGGAGTTCATTCCATGCCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
13558320 G
1 G
13558321 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 7 0.27
27 19 0.73
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:13559331 original size:159 final size:158
Alignment explanation
Indices: 13558969--13559390 Score: 442
Period size: 159 Copynumber: 2.7 Consensus size: 158
13558959 CCCAGTCTCA
* * *
13558969 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGTACCGAGGGTTGAGGCAGCAGGATC-AGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGTGGCAGCAGGATCGA-C
** * * * *
13559033 AGCATGCAGGGGGGACCGAGCTGATCCCTGGCTTGCGCATTCTGCCTCTTTGGCCAGCTGAGCAC
65 AGCACACAAGGGGGACCGAGCTGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCAGCTCAGCAC
*
13559098 CCGCACACCCGTTTCATGGGTTGGCTTAG
130 CCGCACACCCGTTTCATGGGTTGACTTAG
* ** * * * * *
13559127 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCAAGGGTTGTGGCAACGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGAACCGAGGGTTGTGGCAGCAGGATCGA
* * *
13559190 CAGCACACAAAGGGGGACCG-GGTCGATCCCTGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAG
64 CAGCACAC-AAGGGGGACCGAGCT-GATCCCTGGCTTGCGCATTATGCCTCTTCGGCCAGCTCAG
** *
13559254 TGCCCGCACGCTCC-TTTCATGGGTTGACTTAG
127 CACCCGCACAC-CCGTTTCATGGGTTGACTTAG
* * *
13559286 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACTGAGGGTTGTAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGTGGCAGCAGGATCGACA
** * * * *
13559351 GCAC-GTAGGGGGAATCGAGCCGATCCCCGTCTTGCGCATT
66 GCACACAAGGGGG-ACCGAGCTGATCCCTGGCTTGCGCATT
13559391 CTACCTTTCT
Statistics
Matches: 214, Mismatches: 40, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
157 9 0.04
158 74 0.35
159 126 0.59
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGTGGCAGCAGGATCGACA
GCACACAAGGGGGACCGAGCTGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCAGCTCAGCACC
CGCACACCCGTTTCATGGGTTGACTTAG
Found at i:13559478 original size:26 final size:26
Alignment explanation
Indices: 13559448--13559507 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
13559438 GTTCGTTTAG
13559448 GCATACGGATTTCATT-CCATGTCTAA
1 GCATACGGATTTCATTCCCA-GTCTAA
*
13559474 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGATTTCATTCCCAGTCTAA
13559500 G-AT-CGGAT
1 GCATACGGAT
13559508 CGGATTGAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 4 0.13
25 2 0.06
26 22 0.71
27 3 0.10
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGATTTCATTCCCAGTCTAA
Found at i:13560518 original size:301 final size:302
Alignment explanation
Indices: 13559976--13560572 Score: 821
Period size: 301 Copynumber: 2.0 Consensus size: 302
13559966 GCGCCTGCAC
* *
13559976 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAACGA
1 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAGAACAA
* ** * * **
13560041 GGGTTGTGGCAGCGGGACCGGCAGTAGGTAGAGAGGGATCGGATTGATCCTCGGCTTGCGCATTA
66 GGGTTATGGCAGCGGGACCGGCAACACGCAGAGAGGGATCGGACCGATCCTCGGCTTGCGCATTA
* **
13560106 TGCCTCTCTGGCAGGCTCAATGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
131 TGCCTCTCTGGCAGACTCAACCCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
13560171 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCATGCAA-GGGG
196 ATTCCCAGTCTAAGATCAGACCAGACCCAGGGTTGCGACAGCAGGATCGACAGCACGCAAGGGGG
* *
13560235 GACCG-GGTCGATCCCCAGCTTATGCATTCTGCCTCTTCGGAT
261 GACCGAGCT-GATCCCCAGCTTACGCATTCTGCCTCTTCGGAT
* * *
13560277 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCTAGCCGGATCAA
1 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAGAACAA
* *
13560342 GGGTTATGGTAGCGGGACCGGCAACACGCAGA-AGGGGA-CTGGGCCGATCC-CTGGCTTGCGCA
66 GGGTTATGGCAGCGGGACCGGCAACACGCAGAGA-GGGATC-GGACCGATCCTC-GGCTTGCGCA
* * * * *
13560404 TTATGCCT-TTTCGGCCGACTCAGCCCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGA
128 TTATGCCTCTCT-GGCAGACTCAACCCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *
13560468 GTTCATTCCTAGTCTAAGATC-GAACCGGACCCAGGGTTGCGATAGCAGGATTGACAGCACGCAA
192 GTTCATTCCCAGTCTAAGATCAG-ACCAGACCCAGGGTTGCGACAGCAGGATCGACAGCACGCAA
13560532 GGGGGGACCGAGCTGATCCCCAGCTTACGCATTCTGCCTCT
256 GGGGGGACCGAGCTGATCCCCAGCTTACGCATTCTGCCTCT
13560573 CCAACCGGTT
Statistics
Matches: 259, Mismatches: 30, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
300 6 0.02
301 216 0.83
302 35 0.14
303 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (302 bp):
GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAGAACAA
GGGTTATGGCAGCGGGACCGGCAACACGCAGAGAGGGATCGGACCGATCCTCGGCTTGCGCATTA
TGCCTCTCTGGCAGACTCAACCCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCAGACCCAGGGTTGCGACAGCAGGATCGACAGCACGCAAGGGGG
GACCGAGCTGATCCCCAGCTTACGCATTCTGCCTCTTCGGAT
Found at i:13561263 original size:343 final size:339
Alignment explanation
Indices: 13560366--13562002 Score: 1260
Period size: 343 Copynumber: 4.8 Consensus size: 339
13560356 GGACCGGCAA
* ** * * * * * *
13560366 CACGCAGAAGGGGA-CTGGGCCGATCCCTGGCTTGCGCATTATGCCTTTTCGGCCGACTCAGCCC
1 CACGCAG-AGGGGATC-GGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* * * ** * *
13560430 CCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAAGATCGAACC
64 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT-GTCTAAGCCCCAGCC
* * ** * ** * * *
13560494 GGACCCAGGGTTGCGATAGCAGGATTGACAGCACGCA-AGGGGGGACCGAG-CTGATCCCCAGCT
128 GGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGA-GGGGGACCGGGCCTGATCCCCGGCT
* * *** ** * * * * * * *
13560557 TACGCATTCTGCCTCTCCAACCGGTTGAACGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCAT
192 TGCGCATTATGCCTCTCTGGCCGACTCAATGCCCGCACACTCGTTTCGTGGGTTGACTAAGGCAT
* * * * * * * *
13560622 ACGAAATTCA-TACCATGTCTAAGCATACAGAATTCATTCCCAGTCTAAGATCGGTCTGGACCAA
257 ACGGAGTTCATTCCCA-GTCTAAGCATA-TGCAGTCATTCCCAGTCT-AGATC-GAC--GACCGA
* *
13560686 GGGTTGCGGCAGCAGGA-CAAGCAG
316 GGGTTGTGGCAGCAGGATCGA-CAG
* * * * * * *
13560710 CTGGATCTATAGCACGCATGGGGGACCAGGCCGATCCTCAGCTTGCGTATTCTGCCTCTTCGGCA
1 C---A-C----GCA-G-A--GGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCC
* *
13560775 GGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
54 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
** * * ** ** *
13560840 GCCTTAGCCGGACTGAGGGTTGTGACAGTAGGACCGATAGCACGCAGCGGGGGACCGGG-CTGAT
119 GCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCCTGAT
* * * * * * * * **
13560904 ACTCGACTTACGCATTATGCCTCTCAGGCCGACTGAGTGCCCGCACACTCATTTTATGGGTTGAC
184 CCCCGGCTTGCGCATTATGCCTCTCTGGCCGACTCAATGCCCGCACACTCGTTTCGTGGGTTGAC
*
13560969 TAAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGCAGTTCATTCCCAGTCTAGGATCAGATC
249 TAAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGCAG-TCATTCCCAGTCTA-GATC-GA-C
* * **
13561034 AAACCGAGGGTTGCGGCAGCATTATCGACAG
310 -GACCGAGGGTTGTGGCAGCAGGATCGACAG
*
13561065 CACGCAGAGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCC
1 CACGCAGAGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCC
* *
13561130 GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
66 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
* ** * *
13561195 CCAAGGGTTGTGGCAATGGGACCGGCAGCACGCAGAGGGGGATC-GGCCTGATCCTCGGCTTGCG
131 CCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCCTGATCCCCGGCTTGCG
* * * * *
13561259 CATTATGCCTCT-TCGG-CTAGCTCAACGCCCGCACGCTCGTCTCGTGGGTTGACTTATGG-ATA
196 CATTATGCCTCTCT-GGCCGA-CTCAATGCCCGCACACTCGTTTCGTGGGTTGAC-TAAGGCATA
13561321 CGGAGTTCATTCCCAGTCTAAG---AT-CAG---------G-C-----CG--GACCGAGGGTTGT
258 CGGAGTTCATTCCCAGTCTAAGCATATGCAGTCATTCCCAGTCTAGATCGACGACCGAGGGTTGT
* *
13561365 GGCAGCAGGATTGACAC
323 GGCAGCAGGATCGACAG
* * * * * ** * * *
13561382 CACGTAGGAGGGGATCAGGCCGA-CCCTAGCTTGAGCATTCAACCTCTCCGACTGGCTAAGCGCC
1 CACGCA-GAGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
* ** * *
13561446 CGGAATCTCGTTCCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
65 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
** * * * * * * *
13561511 ACCGAGGGTTGTGGCAGCGGGACCACCCGTAGGAAGAGGGGGACCGGGCC-CATCCCCAGCTTGT
130 ACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCCTGATCCCCGGCTTGC
* *
13561575 GCATTATGCCTCTCTGGCCTG-CTCAATGCCCGCACACTTGTTTCGTGGGTTGACTTAGGCATAC
195 GCATTATGCCTCTCTGGCC-GACTCAATGCCCGCACACTCGTTTCGTGGGTTGACTAAGGCATAC
* *
13561639 GGAGTTCATTCCCAATCTAAGCATATGGAGTGCATTCCCAGTCTAAGATCCGACCGGACCGAGGG
259 GGAGTTCATTCCCAGTCTAAGCATATGCAGT-CATTCCCAGTCT-AGAT-CGA-C-GACCGAGGG
* * *
13561704 TTATAGTAGCAGGATCGACAG
319 TTGTGGCAGCAGGATCGACAG
* * * * * * * *
13561725 CACGCAGGGGGGATCGAGTCGATCCCC-GACTTACGCAATCTGCCTATCTGGCCGACTGAGCACC
1 CACGCAGAGGGGATCGGGTCGATCCCCAG-CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
* * *
13561789 TGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGG
65 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * ** * * * * *
13561854 ATCGAGGGTTGTCGCAGCGGGATTGGTAGCAGGTAGAAGGGGACTGGG-CTGATCCCCGGCTTGC
130 ACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCCTGATCCCCGGCTTGC
* ** * * *
13561918 GTATTATGCCTCTCTGGTAGGCTCAATGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACT
195 GCATTATGCCTCTCTGGCCGACTCAATGCCCGCACACTCGTTTCGTGGGTTGACTAAGGCATACG
*
13561983 GAGTTCATTCCAAGTCTAAG
260 GAGTTCATTCCCAGTCTAAG
13562003 ATCGAACCAA
Statistics
Matches: 1036, Mismatches: 198, Indels: 119
0.77 0.15 0.09
Matches are distributed among these distances:
316 3 0.00
317 233 0.22
318 20 0.02
320 2 0.00
321 3 0.00
322 1 0.00
328 1 0.00
329 1 0.00
331 1 0.00
332 1 0.00
339 5 0.00
340 2 0.00
342 19 0.02
343 457 0.44
344 5 0.00
345 1 0.00
346 1 0.00
347 4 0.00
348 1 0.00
351 1 0.00
352 4 0.00
353 2 0.00
354 3 0.00
355 257 0.25
356 8 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (339 bp):
CACGCAGAGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
CCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCCTGATCCCCGGCTTGCG
CATTATGCCTCTCTGGCCGACTCAATGCCCGCACACTCGTTTCGTGGGTTGACTAAGGCATACGG
AGTTCATTCCCAGTCTAAGCATATGCAGTCATTCCCAGTCTAGATCGACGACCGAGGGTTGTGGC
AGCAGGATCGACAG
Found at i:13561291 original size:159 final size:159
Alignment explanation
Indices: 13561036--13561650 Score: 577
Period size: 159 Copynumber: 3.9 Consensus size: 159
13561026 ATCAGATCAA
* *** * * * *
13561036 ACCGAGGGTTGCGGCAGCATTATCGACAGCACGCAGA-GGGGATCGGGTCGATCCCCGGCTTGCG
1 ACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCAGGCCGATCCCCAGCTTGCG
* * * * * * *
13561100 CATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
66 CATTATGCCTCTCCGGCTGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
13561165 AGTTCATTCCATGTCTAAGCCCCAGTCGG
131 AGTTCATTCCATGTCTAAGCCCCAGCCGG
* ** * * *
13561194 ACCAAGGGTTGTGGCAATGGGACCGGCAGCACGCAGAGGGGGATC-GGCCTGATCCTCGGCTTGC
1 ACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCAGGCC-GATCCCCAGCTTGC
* * *
13561258 GCATTATGCCTCTTCGGCTAGCTCAACGCCCGCACGCTCGTCTCGTGGGTTGACTTATGG-ATAC
65 GCATTATGCCTCTCCGGCTGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTA-GGCATAC
**
13561322 GGAGTTCATTCCCA-GTCTAAG-ATCAGGCCGG
129 GGAGTTCATT-CCATGTCTAAGCCCCA-GCCGG
* ** * * * *
13561353 ACCGAGGGTTGTGGCAGCAGGATTGACACCACGTAG-GAGGGGATCAGGCCGA-CCCTAGCTTGA
1 ACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAG-GGGGATCAGGCCGATCCCCAGCTTGC
* * * ** * *
13561416 GCATTCA-ACCTCTCCGACTGGCT-AAGCGCCCGGAATCTCGTTCCGTGGGTTGGCTTAGGCATA
65 GCATT-ATGCCTCTCCGGCTGGCTCAA-CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* *
13561479 GGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
128 CGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * * * * * * *
13561511 ACCGAGGGTTGTGGCAGCGGGACC-ACCCGTAGGAAGAGGGGGACCGGGCCCATCCCCAGCTTGT
1 ACCGAGGGTTGTGGCAGCGGGACCGA-CAGCACGCAGAGGGGGATCAGGCCGATCCCCAGCTTGC
* * * *
13561575 GCATTATGCCTCTCTGGCCT-GCTCAATGCCCGCACACTTGTTTCGTGGGTTGACTTAGGCATAC
65 GCATTATGCCTCTCCGG-CTGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
13561639 GGAGTTCATTCC
129 GGAGTTCATTCC
13561651 CAATCTAAGC
Statistics
Matches: 364, Mismatches: 75, Indels: 35
0.77 0.16 0.07
Matches are distributed among these distances:
157 8 0.02
158 145 0.40
159 198 0.54
160 13 0.04
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (159 bp):
ACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCAGGCCGATCCCCAGCTTGCG
CATTATGCCTCTCCGGCTGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTCCATGTCTAAGCCCCAGCCGG
Found at i:13561582 original size:317 final size:317
Alignment explanation
Indices: 13561007--13561659 Score: 803
Period size: 317 Copynumber: 2.1 Consensus size: 317
13560997 AAGCATATGC
* * ** *
13561007 AGTTCATTCCCAGTCTAGGATCAGATCAAACCGAGGGTTGCGGCAGCATTATCGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCAGGATCGACACCACGCAG
* * * * ** * * *
13561072 AGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCC
66 AGGGGATCAGGCCGATCCCCAGCTTGAGCATTCAACCTCTCCGACCGGCTAAGCGCCCGCAAGCC
* * *
13561137 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGG
131 CGTTCCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGG
* ** * * * * *
13561202 TTGTGGCAATGGGACCGGCAGCACGCAGAGGGGGATCGGCCTGATCCTCGGCTTGCGCATTATGC
196 TTGTGGCAACGGGACCACCAGCACGAAGAGGGGGACCGGCCTCATCCCCAGCTTGCGCATTATGC
*
13561267 CTCT-TCGG-CTAGCTCAACGCCCGCACGCTCGTCTCGTGGGTTGACTTATGG-ATACGG
261 CTCTCT-GGCCT-GCTCAACGCCCGCACACTCGTCTCGTGGGTTGACTTA-GGCATACGG
* ** * * *
13561324 AGTTCATTCCCAGTCTAAGATCAGGCCGGACCGAGGGTTGTGGCAGCAGGATTGACACCACGTAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCAGGATCGACACCACGCA-
* * * *
13561389 GAGGGGATCAGGCCGA-CCCTAGCTTGAGCATTCAACCTCTCCGACTGGCTAAGCGCCCGGAATC
65 GAGGGGATCAGGCCGATCCCCAGCTTGAGCATTCAACCTCTCCGACCGGCTAAGCGCCCGCAAGC
* *
13561453 TCGTTCCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
130 CCGTTCCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGG
* * * * *
13561518 GTTGTGGCAGCGGGACCACCCGTAGGAAGAGGGGGACCGGGCC-CATCCCCAGCTTGTGCATTAT
195 GTTGTGGCAACGGGACCACCAGCACGAAGAGGGGGACC-GGCCTCATCCCCAGCTTGCGCATTAT
* * *
13561582 GCCTCTCTGGCCTGCTCAATGCCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACGG
259 GCCTCTCTGGCCTGCTCAACGCCCGCACACTCGTCTCGTGGGTTGACTTAGGCATACGG
*
13561641 AGTTCATTCCCAATCTAAG
1 AGTTCATTCCCAGTCTAAG
13561660 CATATGGAGT
Statistics
Matches: 284, Mismatches: 47, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
316 2 0.01
317 261 0.92
318 21 0.07
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (317 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCAGGATCGACACCACGCAG
AGGGGATCAGGCCGATCCCCAGCTTGAGCATTCAACCTCTCCGACCGGCTAAGCGCCCGCAAGCC
CGTTCCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGG
TTGTGGCAACGGGACCACCAGCACGAAGAGGGGGACCGGCCTCATCCCCAGCTTGCGCATTATGC
CTCTCTGGCCTGCTCAACGCCCGCACACTCGTCTCGTGGGTTGACTTAGGCATACGG
Found at i:13561669 original size:26 final size:26
Alignment explanation
Indices: 13561633--13561685 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13561623 GTTGACTTAG
*
13561633 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTGCATTCCCAATCTAA
* *
13561659 GCATATGGAGTGCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAATCTAA
13561685 G
1 G
13561686 ATCCGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTGCATTCCCAATCTAA
Found at i:13562106 original size:660 final size:660
Alignment explanation
Indices: 13560775--13562161 Score: 1698
Period size: 660 Copynumber: 2.1 Consensus size: 660
13560765 CTCTTCGGCA
* ** *
13560775 GGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 GGCTGAGCGCCCGGAATCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
** * * * * * * **
13560840 GCCTTAGCCGGACTGAGGGTTGTGACAGTAGGACCGATAGCACGCAGCGGGGGACCGGGCTGATA
66 GCCCCAGCCAGACCGAGGGTTGTGACAGCAGGACCGACAGCACGAAGAGGGGGACCGGGCCCATA
* * * *
13560905 CTCGACTTACGCATTATGCCTCTCAGGCCGACTGAGTGCCCGCACACTCATTTTATGGGTTGACT
131 CCCGACTTACGCATTATGCCTCTCAGGCCGACTCAATGCCCGCACACTCATTTCATGGGTTGACT
* * * *
13560970 AAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGCAGTTCATTCCCAGTCTAGGATCAGATCA
196 AAGGCATACGGAGTTCATCCCCAATCTAAGCATATGCAGTGCATTCCCAGTCTAAGATCAGACCA
* * ** * * *
13561035 AACCGAGGGTTGCGGCAGCATTATCGACAGCACGCAGAGGGGATCGGGTCGATCCCCGGCTTGCG
261 AACCGAGGGTTACAGCAGCAGGATCGACAGCACGCAGAGGGGATCGAGTCGATCCCCGACTTACG
* * * *
13561100 CATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
326 CAATCTGCCTATCCGGCCGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
* * *
13561165 AGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAATGGGACCGGCAGCACGCAG
391 AGTTCATTCCATGTCTAAGCCCCAGACGGACCAAGGGTTGTCGCAACGGGACCGGCAGCACGCAG
* * *
13561230 AGGGGGATCGGCCTGATCCTCGGCTTGCGCATTATGCCTCTTCGGCTAGCTCAACGCCCGCACGC
456 AAGGGGATCGGCCTGATCCCCGGCTTGCGCATTATGCCTCTTCGGCTAGCTCAACGCCCGCACAC
* * **
13561295 TCGTCTCGTGGGTTGACTTATGGATACGGAGTTCATTCCCAGTCTAAGATCAGGCCGGACCGAGG
521 TCGTCTCGTGGGTTGACTTATGGATACGGAGTTCATTCCAAGTCTAAGATCAGACCAAACCGAGG
* * * * *
13561360 GTTGTGGCAGCAGGATTGACACCACGTAGGAGGGGATCAGGCCGACCCTAGCTTGAGCATTCAAC
586 GTTGCGACAGCAGGATCGACAACACGCAGGAGGGGATCAGGCCGACCCTAGCTTGAGCATTCAAC
* *
13561425 CTCTCCGACT
651 CTATCCGACC
* * *
13561435 GGCTAAGCGCCCGGAATCTCGTTCCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
1 GGCTGAGCGCCCGGAATCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
13561500 GCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACC-ACCCGTAGGAAGAGGGGGACCGGGCCCAT
66 GCCCCAGCCAGACCGAGGGTTGTGACAGCAGGACCGA-CAGCACGAAGAGGGGGACCGGGCCCAT
* ** * ** *
13561564 -CCCCAGCTTGTGCATTATGCCTCTCTGGCCTG-CTCAATGCCCGCACACTTGTTTCGTGGGTTG
130 ACCCGA-CTTACGCATTATGCCTCTCAGGCC-GACTCAATGCCCGCACACTCATTTCATGGGTTG
* * * *
13561627 ACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATATGGAGTGCATTCCCAGTCTAAGATCCGA
193 ACTAAGGCATACGGAGTTCATCCCCAATCTAAGCATATGCAGTGCATTCCCAGTCTAAGATCAGA
** * * *
13561692 CCGGACCGAGGGTTATAGTAGCAGGATCGACAGCACGCAGGGGGGATCGAGTCGATCCCCGACTT
258 CCAAACCGAGGGTTACAGCAGCAGGATCGACAGCACGCAGAGGGGATCGAGTCGATCCCCGACTT
* * * *
13561757 ACGCAATCTGCCTATCTGGCCGACTGAGCACCTGCATGCTCGTTTCGTGGGTTGGCTTAGGCATA
323 ACGCAATCTGCCTATCCGGCCGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
* * * ** * *
13561822 GGGAGTTCATTCCATGTCTAAGCCCCAGACGGATCGAGGGTTGTCGCAGCGGGATTGGTAGCAGG
388 GGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCAAGGGTTGTCGCAACGGGACCGGCAGCACG
* * * *
13561887 TAGAAGGGGA-CTGGGCTGATCCCCGGCTTGCGTATTATGCCTC-TCTGG-TAGGCTCAATGCCC
453 CAGAAGGGGATC-GGCCTGATCCCCGGCTTGCGCATTATGCCTCTTC-GGCTA-GCTCAACGCCC
* *
13561949 GCACACTCGTTTCGTGGGTTGACTTA-GGCATACTGAGTTCATTCCAAGTCTAAGATC-GAACCA
515 GCACACTCGTCTCGTGGGTTGACTTATGG-ATACGGAGTTCATTCCAAGTCTAAGATCAG-ACCA
* * * *
13562012 AACTGAGGGTTGCGACAGCAGGATCGACAACACGCAGG-GGGGATCGGGTCGATCCCTGGCTT-A
578 AACCGAGGGTTGCGACAGCAGGATCGACAACACGCAGGAGGGGATCAGGCCGA-CCCTAGCTTGA
**
13562075 TGCATTCTGCCTATCCGACC
642 -GCATTCAACCTATCCGACC
* * *
13562095 GGCTGAGCGCCCGGACGT-TCGTTTCGTGGGTTGGCTTCGGCATACAGAGTTCATTCCATGTCTA
1 GGCTGAGCGCCCGGA-ATCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
13562159 AGC
65 AGC
13562162 ATACAGAGTT
Statistics
Matches: 613, Mismatches: 103, Indels: 22
0.83 0.14 0.03
Matches are distributed among these distances:
659 25 0.04
660 586 0.96
661 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (660 bp):
GGCTGAGCGCCCGGAATCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCCCCAGCCAGACCGAGGGTTGTGACAGCAGGACCGACAGCACGAAGAGGGGGACCGGGCCCATA
CCCGACTTACGCATTATGCCTCTCAGGCCGACTCAATGCCCGCACACTCATTTCATGGGTTGACT
AAGGCATACGGAGTTCATCCCCAATCTAAGCATATGCAGTGCATTCCCAGTCTAAGATCAGACCA
AACCGAGGGTTACAGCAGCAGGATCGACAGCACGCAGAGGGGATCGAGTCGATCCCCGACTTACG
CAATCTGCCTATCCGGCCGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
AGTTCATTCCATGTCTAAGCCCCAGACGGACCAAGGGTTGTCGCAACGGGACCGGCAGCACGCAG
AAGGGGATCGGCCTGATCCCCGGCTTGCGCATTATGCCTCTTCGGCTAGCTCAACGCCCGCACAC
TCGTCTCGTGGGTTGACTTATGGATACGGAGTTCATTCCAAGTCTAAGATCAGACCAAACCGAGG
GTTGCGACAGCAGGATCGACAACACGCAGGAGGGGATCAGGCCGACCCTAGCTTGAGCATTCAAC
CTATCCGACC
Found at i:13562184 original size:26 final size:26
Alignment explanation
Indices: 13562134--13562186 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13562124 GTTGGCTTCG
*
13562134 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
13562160 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
13562186 G
1 G
13562187 ATTAGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:13562875 original size:26 final size:26
Alignment explanation
Indices: 13562846--13562897 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13562836 TTCGCTTAGA
13562846 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
13562872 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
13562898 ATTGGATTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:13562951 original size:711 final size:715
Alignment explanation
Indices: 13561945--13563534 Score: 1794
Period size: 711 Copynumber: 2.2 Consensus size: 715
13561935 TAGGCTCAAT
* * * * * *
13561945 GCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACTGAGTTCATTCCAAGTCTAAGATCG-AA
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG-CCGCAG
** * * * * * ** * * *
13562009 CCAAACTGAGGGTTGCGACAGCAGGATCGACAACACGCAG-GGGGGATCGGGTCGATCCCTGGCT
65 CCGGACCGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGGGGGATCGGGTCGATCCCCGACT
* * * * * * * * *
13562073 TATGCATT-CTGCCTATCCGACCGGCTGAGCGCCCGGACGTTCGTTTCGTGGGTTGGCTTCGGCA
130 TACGCATTAC-GCCTCTCCGACCAGCTCAGCACCCGGACGCTCGTTTCGTGGGTTCGCTTAGACA
*
13562137 TACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATTAGACCAAACCGA
194 TACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATTAGACCAAACCAA
*
13562202 GGGTTACATCAGCAAGACCAGTAGCAAGATCAGCAGCATGCAGG-GGTGGACCGAGCCAATCCCC
259 GGGTTACATCAGCAAGACCAGCAGCAAGATCAGCAGCATGCAGGAGG-GGACCGAGCCAATCCCC
* * * ** *
13562266 GACTTGTGCATTCTGCCTCTCCGGCTGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
323 GACTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAG
* *
13562331 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC-GAACCGAGGGTTGTGGTAGCAGGATCGAC
388 ACATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAG-ACCGAGGGTTGTGGTAGCAGGATCGAA
* **
13562395 AGCGGGCTCGACAGCACGCAGAGGGGGA-CTGGG-TCGATCCCCGGGTGGCACATTATGCCTCTC
452 AGCGGGATCGACAGCACGCAGAGGGGGATC-GGGCT-GATCCCCGACTGGCACATTATGCCTCTC
* * *
13562458 -T-G-G-CCGG-T-TGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTAT
515 ATCGCGACCGGCTCTGAGCGCCTACACGCTCGTTTCATGGGTAGACTTAGGCATACGGAGTTCAT
* * * * *
13562517 CCCTAGTCTAAGTATACGGAGTTCATTTCCAGTCTAAGATCGGACTGGACCGAGGGTCGCGGTAG
580 CCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTCGCAGTAG
* * * *
13562582 CAGGATC-AGCAGCATGCAGGGGGGATC-GAGTCGATCCCCGGCTTACACATTCTACCTCT-CTG
645 CAGGATCGA-CACCACGCA--GGGGACCAG-GTCGATCCCCGACTTACACATTCTACCTCTCCT-
** *
13562644 GTCGGTTGAGC
705 ACCGATTGAGC
* ** *
13562655 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCGCAGC
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCGCAGC
* *
13562720 CGGACCGAGGGTTGTGGCAGCGGGACCGGTAGCATGCAGAGGGGGATCGGGTCAATCCCCGACTT
66 CGGACCGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTT
* *
13562785 ACGCATTACGCCTCTCC-AGCCAGCTCAGCACCCGTACGCTCTTTTCGTGGGTTCGCTTAGACAT
131 ACGCATTACGCCTCTCCGA-CCAGCTCAGCACCCGGACGCTCGTTTCGTGGGTTCGCTTAGACAT
* * * * ** *
13562849 ACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTAGACCAAG
195 ACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATTAGACCAAACCAAG
* * * * * *
13562914 GGTTGCGA-CAGCAGGACCAGCAGCAGGATCGGCAGCATGCAGGAGGGGATCGGGCCAATCCCCG
260 GGTTAC-ATCAGCAAGACCAGCAGCAAGATCAGCAGCATGCAGGAGGGGACCGAGCCAATCCCCG
* * *
13562978 GCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCACACGCTTGTTTCATGGGTTGGCTTAGA
324 ACTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGA
* * *
13563043 CATACGGAGTTCATTCGATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGTAGCAGGATTGAAAG
389 CATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGATCGAAAG
* * *
13563108 CGGGATCGACAGTACGCAGAGGGGGATCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCTGAT
454 CGGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCGACTGGCACATTATGCCTCTC--AT
* *
13563173 CGGCCTCTCCGACCGGCATCTCCGGCCGACTGAGCGCCTACATGCTTGTTTCATGGGTAGACTTA
517 C-G------CGACCGG---CT--------CTGAGCGCCTACACGCTCGTTTCATGGGTAGACTTA
*
13563238 GGCATACGGAGTTCATCCCTTGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGA
564 GGCATACGGAGTTCATCCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * ** * ***
13563303 TCGAGGGTTGCAGTAGCAGGATCGATACCACGCAGGGGACCAGGTCGATCCTTGATTTGTGCATT
629 CCGAGGGTCGCAGTAGCAGGATCGACACCACGCAGGGGACCAGGTCGATCCCCGACTTACACATT
*
13563368 CTGCCTCTCCTACCGATTGAGC
694 CTACCTCTCCTACCGATTGAGC
* * *
13563390 GCCCGCAAGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGC
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCGCAGC
* * * *
13563455 CGGACCGAGGGTTGTGGCAGCGGGACCAGTAGCACGCAGAGGGGGACCGGGCCGATCCCCGACCT
66 CGGACCGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTT
* *
13563520 GCGCATTATGCCTCT
131 ACGCATTACGCCTCT
13563535 TCAATCGGCT
Statistics
Matches: 730, Mismatches: 112, Indels: 51
0.82 0.13 0.06
Matches are distributed among these distances:
709 2 0.00
710 82 0.11
711 345 0.47
712 7 0.01
714 1 0.00
716 1 0.00
723 1 0.00
724 4 0.01
728 1 0.00
735 166 0.23
736 3 0.00
737 116 0.16
738 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (715 bp):
GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCGCAGC
CGGACCGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTT
ACGCATTACGCCTCTCCGACCAGCTCAGCACCCGGACGCTCGTTTCGTGGGTTCGCTTAGACATA
CAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATTAGACCAAACCAAGG
GTTACATCAGCAAGACCAGCAGCAAGATCAGCAGCATGCAGGAGGGGACCGAGCCAATCCCCGAC
TTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGACA
TACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGATCGAAAGCG
GGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCGACTGGCACATTATGCCTCTCATCGCG
ACCGGCTCTGAGCGCCTACACGCTCGTTTCATGGGTAGACTTAGGCATACGGAGTTCATCCCTAG
TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTCGCAGTAGCAGGAT
CGACACCACGCAGGGGACCAGGTCGATCCCCGACTTACACATTCTACCTCTCCTACCGATTGAGC
Found at i:13563288 original size:26 final size:26
Alignment explanation
Indices: 13563239--13563291 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13563229 GTAGACTTAG
* *
13563239 GCATACGGAGTTCATCCCTTGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
13563265 GCATACAGAGTTCATTCCC-AGTCTAA
1 GCATACAGAGTTCA-TCCCTAGTCTAA
13563291 G
1 G
13563292 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:13564821 original size:159 final size:157
Alignment explanation
Indices: 13564465--13564841 Score: 364
Period size: 159 Copynumber: 2.4 Consensus size: 157
13564455 AAGTATATGG
* * * * *
13564465 AGTTCATTCCCAGTCTAAGATCGGACCAGATCAAGGGTTGCGACAGCAGGATCGACAGCACGCAT
1 AGTTCATTCCCAGTCTAAGATCGGACGA-ATCAAGGGTTGAGGCAGCAGGACCGACAGCACGCAA
** * * * * * *
13564530 GGGGGACTGGGTCGATCCCCGGCTTCCGCATTTTGCCTCTTTGGCCAGCTGAGCGCCCGCATGCC
65 GGGGGACCAGATCGATCCCCGGCTTCCGCATTATGCCTCTTTGACCAGCTCAGCGCCAGCACGCC
* * *
13564595 CGTTTCGTGGGTTTACTTAGGCATAGGG
130 CGTTTCGTGGGTTGACTTAGGCATACGA
** * * * * * *
13564623 AGTTCATT-CCATGTCTAAGCCCCAGCCGAACCGAA-GGTTGTGGCAGCGGGACCGATAGCACGC
1 AGTTCATTCCCA-GTCTAAG-ATCGGACGAATC-AAGGGTTGAGGCAGCAGGACCGACAGCACGC
* * * *
13564686 AGAGGGGGACCAGATCGGTCCCTGGCTTGCGCATTATGCCT-TTTCGACCGGCTCAGCGCCAGCA
63 A-AGGGGGACCAGATCGATCCCCGGCTTCCGCATTATGCCTCTTT-GACCAGCTCAGCGCCAGCA
* * *
13564750 CGCTCGTTTCGTGGGTTGATTTAGGTATACGA
126 CGCCCGTTTCGTGGGTTGACTTAGGCATACGA
* * *
13564782 AGTTCATTCCCAATCTAAGATCGGATCGAATCAAGGGTTGAGGCAGCATGATCGACAGCA
1 AGTTCATTCCCAGTCTAAGATCGGA-CGAATCAAGGGTTGAGGCAGCAGGACCGACAGCA
13564842 TGTAGGAGCC
Statistics
Matches: 170, Mismatches: 41, Indels: 15
0.75 0.18 0.07
Matches are distributed among these distances:
157 3 0.02
158 48 0.28
159 116 0.68
160 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAAGATCGGACGAATCAAGGGTTGAGGCAGCAGGACCGACAGCACGCAAG
GGGGACCAGATCGATCCCCGGCTTCCGCATTATGCCTCTTTGACCAGCTCAGCGCCAGCACGCCC
GTTTCGTGGGTTGACTTAGGCATACGA
Found at i:13565133 original size:26 final size:26
Alignment explanation
Indices: 13565097--13565149 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13565087 GTTGACTTAG
13565097 GCATACAGAGTCCATCCCCAGTCTAA
1 GCATACAGAGTCCATCCCCAGTCTAA
* * *
13565123 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTCCATCCCCAGTCTAA
13565149 G
1 G
13565150 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTCCATCCCCAGTCTAA
Found at i:13565680 original size:26 final size:26
Alignment explanation
Indices: 13565644--13565693 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13565634 GTTAACTTAG
13565644 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
13565670 GCATATGGAGTTCATTCCCAGTCT
1 GCATATGGAGTTCATCCCCAGTCT
13565694 GAGCGCCCGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:13566085 original size:26 final size:26
Alignment explanation
Indices: 13566049--13566098 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
13566039 AGCTTAGGCT
13566049 TACGGAGTTCATT-CCATGTCTAAGCA
1 TACGGAGTTCATTCCCA-GTCTAAGCA
13566075 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
13566099 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:13567163 original size:159 final size:158
Alignment explanation
Indices: 13566838--13567295 Score: 386
Period size: 159 Copynumber: 2.9 Consensus size: 158
13566828 AGATAGAGTG
* * * *** * *
13566838 TTGCGATAGCAGGATCGACAGCACACAGGGGGGACCGGGCCGATCCTTGACTTGTGCATTCTGCC
1 TTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCCACTTGCGCATTATGCC
* * *** *** * * *
13566903 TCTCCGACTGGCTGAGCACCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTC
66 TCTCCGACCGGCTCAATGCCCGTACGTTTGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTC
* *
13566968 CATGTCTAAGCCCCAGCTGGACCGAGGG
131 CATGTCTAAGCCCCAGCTGAACCGAGGA
* ** * * * *
13566996 TTGTGACAGTGGGATCGGCAGCACGCAGATGGGGATCGGGCTGATCCCCCACTTGCGGATTATGC
1 TTGCGACAGCAGGATCGACAGCACGCAG-GGGGGACCGGGCTGATCCCCCACTTGCGCATTATGC
13567061 CTCTCCGACCGGCTCAATGCCCGTACGTTTGTTTCATAGGTTGACTTAGGCATACGGAGTTCATT
65 CTCTCCGACCGGCTCAATGCCCGTACGTTTGTTTCATAGGTTGACTTAGGCATACGGAGTTCATT
** * * *
13567126 CCCA-GTCTAAG-ATCGGATCGAACTGAGGA
130 -CCATGTCTAAGCCCCAGCT-GAACCGAGGA
* * ** * *
13567155 TTGCGACAGCAGGATCGATAGCATGCAGGGGGGACCGGGCTGATCCCCGGCTTGTGCATTCTGCC
1 TTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCCACTTGCGCATTATGCC
* * * * * * * * *
13567220 TCTCCGGCCAGCT-GA-GCACCGGCATGTTCAG-TTCATGGGTTGGCTTAGGCATACAGAGTTCA
66 TCTCCGACCGGCTCAATGC-CC-GTACGTT-TGTTTCATAGGTTGACTTAGGCATACGGAGTTCA
*
13567282 TTTCATGTCTAAGC
128 TTCCATGTCTAAGC
13567296 GTACGGAGTT
Statistics
Matches: 236, Mismatches: 56, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
156 2 0.01
157 5 0.02
158 108 0.46
159 118 0.50
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
TTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCCACTTGCGCATTATGCC
TCTCCGACCGGCTCAATGCCCGTACGTTTGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTC
CATGTCTAAGCCCCAGCTGAACCGAGGA
Found at i:13567267 original size:158 final size:156
Alignment explanation
Indices: 13566800--13567283 Score: 451
Period size: 158 Copynumber: 3.1 Consensus size: 156
13566790 TAAGCTTATA
* * * *
13566800 GAGTTCATTCCCAGTCTAGGATCAGACCAGA-TAGAGTGTTGCGATAGCAGGATCGACAGCACAC
1 GAGTTCATTCCCAGTCTAAGATCAGACGA-ACT-GAG-GTTGCGACAGCAGGATCGACAGCACGC
* ** *
13566864 AGGGGGGACCGGGCCGATCCTTGACTTGTGCATTCTGCCTCTCCGACTGGCTGAGCACCCGTACG
63 AGGGGGGACCGGGCTGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGGCTGAGCA-CCGTACG
* * *
13566929 -CCCGTTTCATGGGTTGGCTTAGGCATAGG
127 TTCAGTTTCATGGGTTGGCTTAGGCATACG
** * * * ** *
13566958 GAGTTCATT-CCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGACAGTGGGATCGGCAGCACG
1 GAGTTCATTCCCA-GTCTAAG-ATCAGAC-GAACTGA-GGTTGCGACAGCAGGATCGACAGCACG
* * * * * * *
13567021 CAGATGGGGATCGGGCTGATCCCCCACTTGCGGATTATGCCTCTCCGACCGGCTCAATGC-CCGT
62 CAG-GGGGGACCGGGCTGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGGCT-GA-GCACCGT
* * *
13567085 ACGTT-TGTTTCATAGGTTGACTTAGGCATACG
124 ACGTTCAGTTTCATGGGTTGGCTTAGGCATACG
* * *
13567117 GAGTTCATTCCCAGTCTAAGATCGGATCGAACTGAGGATTGCGACAGCAGGATCGATAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATCAGA-CGAACTGAGG-TTGCGACAGCAGGATCGACAGCACGCA
* * * * *
13567182 GGGGGGACCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCAGCTGAGCACCGGCATGT
64 GGGGGGACCGGGCTGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGGCTGAGCACC-GTACGT
*
13567247 TCAG-TTCATGGGTTGGCTTAGGCATACA
128 TCAGTTTCATGGGTTGGCTTAGGCATACG
13567275 GAGTTCATT
1 GAGTTCATT
13567284 TCATGTCTAA
Statistics
Matches: 255, Mismatches: 55, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
156 2 0.01
157 6 0.02
158 122 0.48
159 118 0.46
160 5 0.02
161 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
GAGTTCATTCCCAGTCTAAGATCAGACGAACTGAGGTTGCGACAGCAGGATCGACAGCACGCAGG
GGGGACCGGGCTGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGGCTGAGCACCGTACGTTCA
GTTTCATGGGTTGGCTTAGGCATACG
Found at i:13568365 original size:159 final size:158
Alignment explanation
Indices: 13567746--13568365 Score: 466
Period size: 159 Copynumber: 3.9 Consensus size: 158
13567736 CAGCATGTAG
* * * *
13567746 GGGGGACCGAGCCGATCCTCAGCTTGTGCATTCTGCCTC-TCTGGCCGACTGAGTGCCCGCACGC
1 GGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTTC-GGCCGACTCAGTGCCCGCACGC
* * ** * * ** * *
13567810 CCTTTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCTCTAGTCGGAACGAGG
65 CCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGATC-AACCGGATCAAGG
* *
13567875 GTTGTGGCAGCGGGACTGGCAGCACACAGA
129 GTTGTGGCAGCAGGACTGGCAGCACGCAGA
* * * * ** * *
13567905 GGGGGACC-AGGTCGA-CCCGC-GCTTGCGCATTATGCCTCTTCTGTCGGCTCAGCACCCACACA
1 GGGGGACCGA-GCCGATCCC-CAGCTTGCGCATTATGCCTCTTCGGCCGACTCAGTGCCCGCACG
* * * * * * *
13567967 CTCATTTCATGGGTTGACTTATGTATACAAAGTTCATTCCCA-GTCTAAGATCAGATCGGACCAA
64 CCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCTAAGATCA-ACCGGATCAA
* * * * * *
13568031 GGGTTGCGGTAGCAGGA-TCGACAGCCCGCTGG
127 GGGTTGTGGCAGCAGGACT-GGCAGCACGCAGA
* * ** * * * * * *
13568063 GGGGGATCGAGCCGATCCCCAGCTTACATATTCTGCCTCTCCGACCGGCTGAGTGCCCGCATGCC
1 GGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCGACTCAGTGCCCGCACGCC
* ** * * ** *
13568128 CGTTTCATGGGTTGGCTTAGGCATAGGGTGTTGATTCCATGTCTAAGCCCCAACCGGATCGAGGG
66 CGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG-ATCAACCGGATCAAGGG
* * * *
13568193 CTGTGCCAACAGGACTGGCAGCACGCCGA
130 TTGTGGCAGCAGGACTGGCAGCACGCAGA
* * * *
13568222 AGGGGACC-AGGCCGATCCCC-GACTTGTGCATTATGCCTCTTCGGCTGACTCAGTGCCCGTACG
1 GGGGGACCGA-GCCGATCCCCAG-CTTGCGCATTATGCCTCTTCGGCCGACTCAGTGCCCGCACG
* * *
13568285 CTCGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCC-TAGTCTAAGATCGAACCAGATCAA
64 CCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCAT-GTCTAAGATC-AACCGGATCAA
*
13568349 GGGTTGTAGCAGCAGGA
127 GGGTTGTGGCAGCAGGA
13568366 TCGATAGTAC
Statistics
Matches: 343, Mismatches: 102, Indels: 32
0.72 0.21 0.07
Matches are distributed among these distances:
157 2 0.01
158 118 0.34
159 220 0.64
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCGACTCAGTGCCCGCACGCC
CGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGATCAACCGGATCAAGGGT
TGTGGCAGCAGGACTGGCAGCACGCAGA
Found at i:13569194 original size:26 final size:26
Alignment explanation
Indices: 13569157--13569208 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13569147 GTTGGCTTAG
*
13569157 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
13569183 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13569209 TATTTTAAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13570343 original size:158 final size:159
Alignment explanation
Indices: 13569990--13570364 Score: 387
Period size: 158 Copynumber: 2.4 Consensus size: 159
13569980 CGGCTAAACG
* * *
13569990 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCG
1 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACCG
* ** * ** * * * *
13570055 GATCGAGGGTTGTGGCAGTGGGACCGGTAGCACGTAGAGGGGGACCGGGTCGATCCCTGACTTAC
66 GACCGAGGGTTACGGCAGTAGGACCGACAACACGTAAAGGGGGACCGGGCCCATCCCTGACTTAC
* * * ** *
13570120 GCATTATGCCTCTTCGGTAGGCTCAGCAC
131 ACATTATACCTCTCCGACAGACTCAGCAC
* * * * * * *
13570149 CTGTACGCTCGTTTCATGGGGTGACTTATGTATACGGAGTTCATTCC-TAGTCTAAG-ATCAGAC
1 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCA-AC
* *
13570212 CGGACCGAGGGTTACGGCAGTAGGATCGACAACACG-AAAGGGGGACCGGGCCCATCCCTGGCTT
64 CGGACCGAGGGTTACGGCAGTAGGACCGACAACACGTAAAGGGGGACCGGGCCCATCCCTGACTT
* * * * *
13570276 GCACATTCTACCTCTCCGACCGACTGAGCGC
129 ACACATTATACCTCTCCGACAGACTCAGCAC
* * *
13570307 CCGCACGCTCGTTTCATGGATTGGCTTAGGCGTACGGAGTTCATTCCATGTCCAAGCA
1 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13570365 TACTGAGTTC
Statistics
Matches: 170, Mismatches: 42, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
158 92 0.54
159 78 0.46
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACCG
GACCGAGGGTTACGGCAGTAGGACCGACAACACGTAAAGGGGGACCGGGCCCATCCCTGACTTAC
ACATTATACCTCTCCGACAGACTCAGCAC
Found at i:13571204 original size:26 final size:26
Alignment explanation
Indices: 13571168--13571220 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13571158 GTTGACTTAG
13571168 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13571194 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13571220 G
1 G
13571221 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13572328 original size:26 final size:26
Alignment explanation
Indices: 13572292--13572342 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13572282 TAGCTTAGGC
13572292 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACGGAGTTCATTCCCA-GTCTAAGT
13572318 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
13572343 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:13573044 original size:26 final size:26
Alignment explanation
Indices: 13573014--13573066 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13573004 GTTGACTTAG
13573014 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
13573040 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
13573066 G
1 G
13573067 ATTGGACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:13573327 original size:157 final size:158
Alignment explanation
Indices: 13573040--13573539 Score: 409
Period size: 157 Copynumber: 3.2 Consensus size: 158
13573030 CCCAATCTAA
* **** * * * *
13573040 GCATATGGAGTTCATTCCCA-GTCTAAGATTGGACAGGACCGAGGGTTGCGACAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCGGACCGAGGGTTGCGACAGCAAGACCGAC
* * * * * * * * *** * *
13573104 AGCACGCAAGGGGGACCGGGTC-GATCCCCAGCTTGCGCATTCTGCCTCACCGGTCAGCTGAGTG
65 AGCATGGAGGGGGGACCGAGTCGGA-CCCCAGCTTACACATTATGCCTCTCCAACCGGCTCAGTG
* ** * *
13573168 CCCACACACCCATTTCGTGGGGTAGCTTAG
129 CCCGCATGCTCGTTTCGTGGGGTAGCTTAG
* * * * **
13573198 GCATAGGGAGTTCATTCCATGTCTAAGCCCAG-TCGGACCGAGGGTTGTGATAGCAAGACCGGTA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCAGACCGGACCGAGGGTTGCGACAGCAAGACCGACA
* * ** *
13573262 GCATGGAGGGGGGACCG-GTGGGATCCCCGGCTTGTACATTATGCCTCTCCAATCGGCTCAGTGC
66 GCATGGAGGGGGGACCGAGTCGGA-CCCCAGCTTACACATTATGCCTCTCCAACCGGCTCAGTGC
* *
13573326 CCGCATGTTCGTTTCGT-GGGTTGACTTAG
130 CCGCATGCTCGTTTCGTGGGGTAG-CTTAG
* ** * * * *
13573355 GCATACGGAGTTCATTCCA-GTTTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCAGACCGGACCGAGGGTTGCGACAGCAAGACCGACA
* * * * * *
13573419 GCATGTAGGGGGGACCGAGTCGGACCCCAGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCC
66 GCATGGAGGGGGGACCGAGTCGGACCCCAGCTTACACATTATGCCTCTCCAACCGGCTCAGTGCC
* * *
13573484 CGCATGCTCGTTTCATGGGTTGGCTTAG
131 CGCATGCTCGTTTCGTGGGGTAGCTTAG
*
13573512 GCATACGGAGTTCATACCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
13573540 ATACGAAGTT
Statistics
Matches: 270, Mismatches: 65, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
156 15 0.06
157 217 0.80
158 38 0.14
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCAGACCGGACCGAGGGTTGCGACAGCAAGACCGACA
GCATGGAGGGGGGACCGAGTCGGACCCCAGCTTACACATTATGCCTCTCCAACCGGCTCAGTGCC
CGCATGCTCGTTTCGTGGGGTAGCTTAG
Found at i:13573758 original size:26 final size:26
Alignment explanation
Indices: 13573722--13573774 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13573712 GTTGACTTTG
*
13573722 GCATACGGAGTTCATCTCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
13573748 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
13573774 G
1 G
13573775 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:13574230 original size:159 final size:156
Alignment explanation
Indices: 13574067--13574368 Score: 358
Period size: 157 Copynumber: 1.9 Consensus size: 156
13574057 AGTCAGACCG
** *
13574067 AGGGTTGTGGCAGCAAGACCGGTAGCA-CATAGAGGGGGATCAGGCCGAT-CCTCGGCTTGCGCA
1 AGGGTTGTGGCAGCAAGACCGACAGCAGCA-AG-GGGGG-TCAGGCCGATCCCT-GGCTTGCACA
* * * * *
13574130 TTAAGCCTCTCCGATCGGCTCAGTGCCCGAACGCTCGTTTCATGGATTGACTTAGGCATACGGAG
62 TTAAGCCCCT-CGACCAGCTAAGCGCCCGAACGCTCGTTTCATGGATTGACTTAGGCATACGGAG
13574195 TTCATTCCC-AGTCTAAGATTGGACCGAACCA
126 TTCATTCCCTA-TCTAAGATTGGACCGAACCA
* * *
13574226 AGGGTTGTGGCAGCAGGATCGACAGCATGCAAGGGGGGTCAGGCCGATCCCTGGCTTGCACATTT
1 AGGGTTGTGGCAGCAAGACCGACAGCA-GCAAGGGGGGTCAGGCCGATCCCTGGCTTGCACATTA
* * * * * * *
13574291 TGCCCCTCGGCCAGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCA
65 AGCCCCTCGACCAGCTAAGCGCCCGAACGCTCGTTTCATGGATTGACTTAGGCATACGGAGTTCA
13574356 TTCCCTATCTAAG
130 TTCCCTATCTAAG
13574369 CATATGGAGT
Statistics
Matches: 121, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
157 59 0.49
158 27 0.22
159 31 0.26
160 2 0.02
161 2 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
AGGGTTGTGGCAGCAAGACCGACAGCAGCAAGGGGGGTCAGGCCGATCCCTGGCTTGCACATTAA
GCCCCTCGACCAGCTAAGCGCCCGAACGCTCGTTTCATGGATTGACTTAGGCATACGGAGTTCAT
TCCCTATCTAAGATTGGACCGAACCA
Found at i:13574360 original size:157 final size:159
Alignment explanation
Indices: 13574003--13574370 Score: 392
Period size: 159 Copynumber: 2.3 Consensus size: 159
13573993 CCGGTTGAGT
* * * *
13574003 GCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCAGACCG
1 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCACCAGACAGACCA
** *
13574067 AGGGTTGTGGCAGCAAGACCGGTAGCACATAGAGGGGGATCAGGCCGATCCTCGGCTTGCGCATT
65 AGGGTTGTGGCAGCAAGACCGACAGCACATAGAGGGGGATCAGGCCGATCCTCGGCTTGCACATT
* * * * *
13574132 AAGCCTCTCCGATCGGCTCAGTGCCCGAAC
130 AAGCCCCTCCGACCAGCTAAGCGCCCGAAC
* * * *** *
13574162 GCTCGTTTCATGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATTGGACCGAACCA
1 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAGACAG-ACCA
* *
13574226 AGGGTTGTGGCAGCAGGATCGACAGCATGCA-AG-GGGGG-TCAGGCCGATCC-CTGGCTTGCAC
65 AGGGTTGTGGCAGCAAGACCGACAGCA--CATAGAGGGGGATCAGGCCGATCCTC-GGCTTGCAC
** * *
13574287 ATTTTGCCCCT-CGGCCAGCTAAGCGCCCGCAC
127 ATTAAGCCCCTCCGACCAGCTAAGCGCCCGAAC
*
13574319 GCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCCTA-TCTAAGCA
1 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCA
13574371 TATGGAGTTC
Statistics
Matches: 173, Mismatches: 29, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
157 60 0.35
158 33 0.19
159 73 0.42
160 5 0.03
161 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAGACAGACCAA
GGGTTGTGGCAGCAAGACCGACAGCACATAGAGGGGGATCAGGCCGATCCTCGGCTTGCACATTA
AGCCCCTCCGACCAGCTAAGCGCCCGAAC
Found at i:13574378 original size:26 final size:26
Alignment explanation
Indices: 13574342--13574394 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13574332 GTTGGCTTAG
13574342 GCATATGGAGTTCATTCCCTA-TCTAA
1 GCATATGGAGTTCATT-CCTAGTCTAA
13574368 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCTAGTCTAA
13574394 G
1 G
13574395 AGTTTTAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 4 0.15
26 22 0.85
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCTAGTCTAA
Found at i:13575098 original size:26 final size:26
Alignment explanation
Indices: 13575062--13575114 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13575052 GTTGACTTAG
*
13575062 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
13575088 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
13575114 G
1 G
13575115 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:13575562 original size:158 final size:156
Alignment explanation
Indices: 13575088--13575589 Score: 526
Period size: 158 Copynumber: 3.2 Consensus size: 156
13575078 CCCAGTCTAA
* * *
13575088 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCCGTA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCAGGATCAGTA
* * * * * * *
13575153 GTACGCAAGGGGGACTGGACCGATCCCCGGCTTGTGCATTC-GACCTCTCCGGCCGGCTGAGCGC
65 GCACG-TAGGGGGACCGGGCCGATCCCCGGCTTATGCATTCTG-CCTCTCCGGTCGGCTAAGCGC
13575217 CCGCACGC-CTGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * ** * ** *
13575246 GCATAGGGATTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTATGGCAGTGGGA-CTGG
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTATGGCAGCAGGATC-AG
* * * * * * *
13575309 TAGCACGTAGAGGGGGATCGGGTCGATCCCCGGCTTACGCATTATGCCTCTTCGGTCGGCTCAGT
63 TAGCACGT--AGGGGGACCGGGCCGATCCCCGGCTTATGCATTCTGCCTCTCCGGTCGGCTAAGC
* *
13575374 GCCCGCACGCTCATTTCGTGGGTTGACTTAG
126 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
13575405 GCATACGGTGTTCATTCCTAGTCTAAGATCAGACTGGTCAGAGGGTTGTGGCAGCAGGATCAATA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCAGGATCAGTA
* *
13575470 GCACGTAGGAGGGACCGGGCCGATCCCCGGCTTATGCATTCTGCCTCTCCGGTTGACTAAGCGCC
65 GCACGTAGG-GGGACCGGGCCGATCCCCGGCTTATGCATTCTGCCTCTCCGGTCGGCTAAGCGCC
* *
13575535 CGAACGCTCGTTTAGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
13575563 GCATACGGAGTTCATTTCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
13575590 CATACGAAGT
Statistics
Matches: 278, Mismatches: 54, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
157 8 0.03
158 145 0.52
159 121 0.44
160 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCAGGATCAGTAG
CACGTAGGGGGACCGGGCCGATCCCCGGCTTATGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13575600 original size:26 final size:25
Alignment explanation
Indices: 13575563--13575614 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
13575553 GTTGGCTTAG
* *
13575563 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGAAGTTCATTCCA-GTCTAA
13575589 GCATACGAAGTTCATTCCAGTCTAA
1 GCATACGAAGTTCATTCCAGTCTAA
13575614 G
1 G
13575615 ATTGGATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAGTCTAA
Found at i:13575883 original size:13 final size:13
Alignment explanation
Indices: 13575865--13575890 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13575855 TGCGTATTAT
13575865 GCCTCTCCGGTCG
1 GCCTCTCCGGTCG
13575878 GCCTCTCCGGTCG
1 GCCTCTCCGGTCG
13575891 ACTGAGCGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.46, G:0.31, T:0.23
Consensus pattern (13 bp):
GCCTCTCCGGTCG
Found at i:13575979 original size:26 final size:26
Alignment explanation
Indices: 13575929--13575979 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
13575919 GTTGACTTAG
* **
13575929 GCATACGGAGTTCATCCCCGGTCTAT
1 GCATACGAAGTTCATCCCCAATCTAT
*
13575955 GCATACGAAGTTCATTCCCAATCTA
1 GCATACGAAGTTCATCCCCAATCTA
13575980 AGATCAAATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAT
Found at i:13577213 original size:26 final size:26
Alignment explanation
Indices: 13577177--13577229 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13577167 GTTGCCTTAG
*
13577177 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
13577203 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
13577229 G
1 G
13577230 ATCGAATCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:13577422 original size:26 final size:26
Alignment explanation
Indices: 13577386--13577436 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13577376 GTTGACTTAG
13577386 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13577412 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
13577437 GGATCTAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13577759 original size:26 final size:26
Alignment explanation
Indices: 13577729--13577781 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13577719 GTTGGCTTAG
*
13577729 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13577755 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13577781 G
1 G
13577782 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13578488 original size:24 final size:26
Alignment explanation
Indices: 13578455--13578505 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13578445 GTTGACTTTG
13578455 GCATACGGAGTT-A-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13578479 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13578505 G
1 G
13578506 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 11 0.46
25 1 0.04
26 12 0.50
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13578964 original size:158 final size:156
Alignment explanation
Indices: 13578479--13578969 Score: 466
Period size: 158 Copynumber: 3.1 Consensus size: 156
13578469 CCCAGTCTAA
* * * *
13578479 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCAGTA
1 GCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGTAGGATCA-TA
* * * * * *
13578544 GCACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTTCCTTTCCGACCGGCTGAGCACC
65 GCACGTAGGGGGGACTGGGCCAATCCCCGACTTGCGCATTCTT-CTCTCCGATCGGCTGAGCACC
** * *
13578609 CATATGCCTGTTTCATGGGTTGGCTTAG
129 CGCACGCTTGTTTCATGGGTTGGCTTAG
* ** * * * * *
13578637 GCATAGGGAGTTCATT-CCATGACTAAGCCCCAG-TCGGACCGAAGGTTGTGGCAGTGGGACCTA
1 GCATAGGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGACAGTAGGATC-A
* * * ** * * * * *
13578700 CAGCACGTAAAGGGGGA-TCAGGCCAATCCTTGGCTTGTGCATTATGCCTCTCCGATCGGCTCAG
63 TAGCACGT-AGGGGGGACT-GGGCCAATCCCCGACTTGCGCATTCT-TCTCTCCGATCGGCTGAG
** ** * *
13578764 TGCCCGCACGCTCATTTCGTGGATTGGCTTAG
125 CACCCGCACGCTTGTTTCATGGGTTGGCTTAG
* *
13578796 GTATAGGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGTAGGATCGATA
1 GCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGTAGGATC-ATA
* * *
13578861 GCACGTAGGGGGGACTGGGCCTATCCCCGACTTGCGCTTTCTATCTCTCCGGTCGGCTGAGCACC
65 GCACGTAGGGGGGACTGGGCCAATCCCCGACTTGCGCATTCT-TCTCTCCGATCGGCTGAGCACC
13578926 CGCACGCTTGTTTCATGGGTTGGCTTAG
129 CGCACGCTTGTTTCATGGGTTGGCTTAG
* *
13578954 GCATACGGAGTACATT
1 GCATAGGGAGTTCATT
13578970 TCATGTCTAA
Statistics
Matches: 252, Mismatches: 72, Indels: 18
0.74 0.21 0.05
Matches are distributed among these distances:
157 3 0.01
158 129 0.51
159 117 0.46
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGTAGGATCATAG
CACGTAGGGGGGACTGGGCCAATCCCCGACTTGCGCATTCTTCTCTCCGATCGGCTGAGCACCCG
CACGCTTGTTTCATGGGTTGGCTTAG
Found at i:13580043 original size:159 final size:157
Alignment explanation
Indices: 13579854--13580301 Score: 400
Period size: 157 Copynumber: 2.8 Consensus size: 157
13579844 CGCATGCCCG
*
13579854 TTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CAGGACCGAGGGT
* * * * **
13579918 TGTGGCAGCGGGACCGACAGCTA-GTAGAGGGGGATCGAGACTATCCCCGGCTTGCGCATTATGC
65 TGTGGCAGCAGGACCGACAGC-ACGCAG-GGGGGACCGAGACGATCCCCAACTTGCGCATTATGC
* * *
13579982 CTCTCCGATCGGCTTAGCACCCAAACACTCA
128 CTCTCCGAT-GACTGAGCACCCAAACACGCA
* * * * ** * * * **
13580013 TTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCTCA-GTCTAAGATCGAACTGGATTGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTC-CATGTCTAAGCCCCAGCAGGACCGAGGGT
* * * * * *
13580077 TGTGACAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCTCAACTTGTGCATTCTGCCT
65 TGTGGCAGCAGGACCGACAGCACGCAGGGGGGACCGAGACGATCCCCAACTTGCGCATTATGCCT
* ** ** * *
13580142 CTCCGGTGACTGAGCGTCCGCACGCGCC
130 CTCCGATGACTGAGCACCCAAACACGCA
*
13580170 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACCGAAGGTT
1 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACCGAGGGTT
* ** * * * * * * *
13580235 GTGGTAGTTGGACC-AGTAGCACGTAGAGGGGGACTGGGCCGATCCTCAGCTTGCGCATTATGCC
66 GTGGCAGCAGGACCGA-CAGCACGCAG-GGGGGACCGAGACGATCCCCAACTTGCGCATTATGCC
13580299 TCT
129 TCT
13580302 TTGGCCAGCT
Statistics
Matches: 226, Mismatches: 57, Indels: 13
0.76 0.19 0.04
Matches are distributed among these distances:
156 3 0.01
157 79 0.35
158 73 0.32
159 69 0.31
160 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (157 bp):
TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACCGAGGGTT
GTGGCAGCAGGACCGACAGCACGCAGGGGGGACCGAGACGATCCCCAACTTGCGCATTATGCCTC
TCCGATGACTGAGCACCCAAACACGCA
Found at i:13580235 original size:157 final size:154
Alignment explanation
Indices: 13579751--13580301 Score: 424
Period size: 159 Copynumber: 3.5 Consensus size: 154
13579741 ATCAGACCGA
* ** * * * *
13579751 ACCGAGGGTTGGGGTAGTAGGATCGGCAGCACGCAGGAGGGACCGGGCCGATCCCAGACTTGCGC
1 ACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCA-ACTTGCGC
* ** ** * * *
13579816 ATTTTGCCTCTTTGGCCAGCTGAGTGCCCGCATGCCCGTTTCGTGGGTTGGCTTAAGCATAGGGA
65 ATTATGCCTCTCCGGTGA-CTGAGCGCCCGCACGCCC-TTTCGTGGGTTGGCTTAGGCATAGGGA
13579881 GTTCATTCCATGTCTAAGCCCCAGTCGG
128 GTTCATTCCATGTCTAAGCCCCAG-CGG
* * * * * * * **
13579909 ACCGAGGGTTGTGGCAGCGGGACCGACAGCTA-GTAGAGGGGGATCGAGACTATCCCCGGCTTGC
1 ACCGAGGGTTGTGACAGCAGGATCGACAGC-ACGCAG-GGGGGACCGAGCCGAT-CCCAACTTGC
* * * * ** * * * * *
13579973 GCATTATGCCTCTCCGATCGGCTTAGCACCCAAACACTCATTTTGTGGGTTGACTTAGGCATACG
63 GCATTATGCCTCTCCGGT-GACTGAGCGCCCGCACGC-CCTTTCGTGGGTTGGCTTAGGCATAGG
* ** * *
13580038 AAGTTCATTCTCA-GTCTAAGATCGAACTGG
126 GAGTTCATTC-CATGTCTAAGCCCCAGC-GG
** *
13580068 ATTGAGGGTTGTGACAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCTCAACTTGTGC
1 ACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCC-CAACTTGCGC
* *
13580133 ATTCTGCCTCTCCGGTGACTGAGCGTCCGCACGCGCCTTTCGTGGGTTGGCTTAGGCATAGGGAG
65 ATTATGCCTCTCCGGTGACTGAGCGCCCGCACGC-CCTTTCGTGGGTTGGCTTAGGCATAGGGAG
13580198 TTCATTCCATGTCTAAGCCCCAGCAGG
129 TTCATTCCATGTCTAAGCCCCAGC-GG
* ** ** * * * * * *
13580225 ACCGAAGGTTGTGGTAGTTGGA-CCAGTAGCACGTAGAGGGGGACTGGGCCGATCCTCAGCTTGC
1 ACCGAGGGTTGTGACAGCAGGATCGA-CAGCACGCAG-GGGGGACCGAGCCGATCC-CAACTTGC
13580289 GCATTATGCCTCT
63 GCATTATGCCTCT
13580302 TTGGCCAGCT
Statistics
Matches: 296, Mismatches: 85, Indels: 24
0.73 0.21 0.06
Matches are distributed among these distances:
156 4 0.01
157 80 0.27
158 98 0.33
159 108 0.36
160 6 0.02
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (154 bp):
ACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCAACTTGCGCA
TTATGCCTCTCCGGTGACTGAGCGCCCGCACGCCCTTTCGTGGGTTGGCTTAGGCATAGGGAGTT
CATTCCATGTCTAAGCCCCAGCGG
Found at i:13580289 original size:316 final size:316
Alignment explanation
Indices: 13579769--13580461 Score: 756
Period size: 316 Copynumber: 2.2 Consensus size: 316
13579759 TTGGGGTAGT
* * * * * **
13579769 AGGATCGGCAGCACGCAGGAGGGACCGGGCCGATCCCAGACTTGCGCATTTTGCCTCTTTGGCCA
1 AGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCA-ACTTGTGCATTCTGCCTCTCCGGCCA
* *
13579834 GCTGAGTGCCCGCATGCCCGTTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAG
65 GCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAG
* *
13579899 CCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCTAGTAGAGGGGGATCGAGACTATCC
130 CCCCAGTCGGACCGAAGGTTGTGGCAGCGGGACCGACAGCTAGTAGAGGGGGATCGAGACGATCC
* * * * * *
13579964 CCGGCTTGCGCATTATGCCTCTCCGATCGGCTTAGCACCCAAACACTCATTTTGTGGGTTGACTT
195 CCAGCTTGCGCATTATGCCTCTCCGACCAGCTCAACACCCAAACACTCATTTCGTGGGTTGACTT
* * *** *
13580029 AGGCATACGA-AGTTCATTCTCAGTCTAAGATCGAA-CTGGATTGAGGGTTG-TGACAGC
260 AGGCATAC-ATAGTTCACTCCCAGTCTAAGATCGAATC-GGACCAAGGGTTGCAG-CAGC
**
13580086 AGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCTCAACTTGTGCATTCTGCCTCTCCGGTGA
1 AGGATCGACAGCACGCAGGGGGGACCGAGCCGATCC-CAACTTGTGCATTCTGCCTCTCCGGCCA
* *
13580151 -CTGAGCGTCCGCACGCGCC-TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
65 GCTGAGCGCCCGCACGC-CCGTTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAA
* ** * * *
13580214 GCCCCAG-CAGGACCGAAGGTTGTGGTAGTTGGACC-AGTAGC-ACGTAGAGGGGGA-CTGGGCC
129 GCCCCAGTC-GGACCGAAGGTTGTGGCAGCGGGACCGA-CAGCTA-GTAGAGGGGGATC-GAGAC
* ** * ** ** * *
13580275 GATCCTCAGCTTGCGCATTATGCCTCTTTGGCCAGCTCAATGCCCGGACGCTCGTTTCGTGGGTT
190 GATCCCCAGCTTGCGCATTATGCCTCTCCGACCAGCTCAACACCCAAACACTCATTTCGTGGGTT
* * *
13580340 GACTTATGCATACATAGTTCACTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCAGTAGC
255 GACTTAGGCATACATAGTTCACTCCCAGTCTAAGATCGAATCGGACCAAGGGTTGCAGCAGC
* * * * *
13580402 AGGATCGACAGCACACAGGGGAGGACCGAGTCAATCCCCGACTTGTGCATTCTACCTCTC
1 AGGATCGACAGCACGCAGGGG-GGACCGAGCCGAT-CCCAACTTGTGCATTCTGCCTCTC
13580462 GACCGATTGA
Statistics
Matches: 314, Mismatches: 51, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
315 5 0.02
316 217 0.69
317 88 0.28
318 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (316 bp):
AGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCAACTTGTGCATTCTGCCTCTCCGGCCAG
CTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGC
CCCAGTCGGACCGAAGGTTGTGGCAGCGGGACCGACAGCTAGTAGAGGGGGATCGAGACGATCCC
CAGCTTGCGCATTATGCCTCTCCGACCAGCTCAACACCCAAACACTCATTTCGTGGGTTGACTTA
GGCATACATAGTTCACTCCCAGTCTAAGATCGAATCGGACCAAGGGTTGCAGCAGC
Found at i:13581227 original size:488 final size:484
Alignment explanation
Indices: 13580090--13581565 Score: 1569
Period size: 488 Copynumber: 3.0 Consensus size: 484
13580080 GACAGCAGGA
* * ** **
13580090 TCGACAGCACGCAGGGGGGACCGAGCCGATCCTCAACTTGTGCATTCTGCCTCTCCGGTGACTGA
1 TCGACAGCACGCAGGGGGGACCGAGCCGATCCT-GACTTGTGCTTTCTGCCTCTCCGCCGGTTGA
*
13580155 GCGTCCGCACGCGCCTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
65 GCGCCCGCACGC-CCTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
* * * * * *
13580220 G-CAGGACCGAAGGTTGTGGTAGTTGGA-CCAGTAGCACGTAGAGGGGGACTGGGCCGAT-CCTC
129 GTCA-GACCGAAGGTTGTGGCAGTAGGACCCA-CAGCATGTAGAGGGGGAC-CGGCTGATCCCT-
* * * * *
13580282 AGCTTGCGCATTATGCCTCTTT-GGCCAGCTCAATGCCCGGACGCTCGTTTCGTGGGTTGACTTA
190 GGCTTGCGCATTATG-CTTTTTCGACCAGCTCAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTA
** * *
13580346 TGCATACATAGTTCACTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCAGTAGCAGGATCGAC
254 TGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGTAGCAGGATCGAC
* * * * ** * **
13580411 AGCACACAGGGGAGGACCGAGTCAATCCCCGACTTGTGCATTCTACCTCT-CGACCGATTGAGCG
319 AGCACGCAGGGG-GGATCGGGTCGATCCCCGACTTGCACATTCTGCCTCTCCGACCGGCTGAGCG
* * * *
13580475 CCCGTACACTCGTTTCATGGGTTGACTTAGGC-GTACGGACTTCATCCCCAGTCTAAGCATACAG
383 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCAG-ACGGAGTTCATCCCCAGTCTAAGCATACGG
* *
13580539 AGTTCATTCCTAATCTAAGATCAGACCGGACTGAGGGTTACGACAGTAGGA
447 AGTTCATTCCTAATCTAAGAT-----CGGACT---GG--AC--C-GAAGGT
* * *
13580590 TCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGTGCATTT-TGTCTCTCTGGCCGGTT
1 TCGACAGCACGCAGGGGGGACCGAGCCGAT-CCTGACTTGTGC-TTTCTGCCTCTC-CGCCGGTT
*
13580654 GAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGGCC
63 GAGCGCCCGCACGCCC-TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
* ** * *
13580719 CAGTCGGACCGAAGGTTGTGGCAGCGGGACCCACAGCATGCAGAGGGAGACCAGGCTGATCCCTG
127 CAGTCAGACCGAAGGTTGTGGCAGTAGGACCCACAGCATGTAGAGGGGGACC-GGCTGATCCCTG
** * * * *
13580784 GCTTGCGCATTATGCTTTTTCGTTCGGCTCAGCGCCCGTACGGTCGTTTCATGGGTTGACTTATG
191 GCTTGCGCATTATGCTTTTTCGACCAGCTCAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTATG
* * *
13580849 CATTA-GGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTT-CAGCAGGAAGATCGAC
256 CA-TACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCAGTAGCAGGATCGAC
* * * *** *
13580911 AGCATGCAGGAGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGTTGGCTGAGTGC
319 AGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCACATTCTGCCTCTCCGACCGGCTGAGCGC
* * * *
13580976 CTGCACGCTCGTTTCATGGGTTAACTTAGGCAGACAGAGTTCATCCCCAATCTAAGCATACGGAG
384 CCGCACGCTCGTTTCATGGGTTGACTTAGGCAGACGGAGTTCATCCCCAGTCTAAGCATACGGAG
* *
13581041 TTCATTTCTAGTCTAAGATCGGACTGGACCGAAGGT
449 TTCATTCCTAATCTAAGATCGGACTGGACCGAAGGT
* * * *
13581077 TACGACAGCACGCAGGGGAGACCGGGCCGATCTCTGGCTTGCGCTTTCTGCCTCTCCGACCGGTT
1 T-CGACAGCACGCAGGGGGGACCGAGCCGATC-CTGACTTGTGCTTTCTGCCTCTCCG-CCGGTT
* * *
13581142 GAGCGGCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
63 GAGCGCCCGCACGCCC-TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
** *
13581207 CAGTCAGACCG-AGTGTTGTGGCAGTAGGACCGGCAGCATGTAGAGGGGGACCGGGTCGATGCCC
127 CAGTCAGACCGAAG-GTTGTGGCAGTAGGACCCACAGCATGTAGAGGGGGACCGGCT-GAT-CCC
* * * * * * *
13581271 -GGCTTACGTATTATGCCTCTCCGACCTGCTCAGTGCCCGTACGCTCATTTCGTGGGTTGACTT-
189 TGGCTTGCGCATTATGCTTTTTCGACCAGCTCAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTA
* * *
13581334 TGGCATACGGAGTTCATTCCCAGTCTAAGATC-GATCGAACCGAGGGTTGCGGTAGCAGGATCAA
254 T-GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGTAGCAGGATCGA
* * * * *
13581398 TAACACGCAGGGGGGATCAGGTCGATCCCTGACTTGCACATTCTGCCTCTCCGACCGGCTAAGCG
318 CAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCACATTCTGCCTCTCCGACCGGCTGAGCG
** * * * * *
13581463 CCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATATGGAGTTCAT-TCCATGTCTAAGCAGACGG
383 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCAGACGGAGTTCATCCCCA-GTCTAAGCATACGG
* * * *
13581527 AGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGT
447 AGTTCATTCCTAATCTAAGATCGGACTGGACCGAAGGT
13581565 T
1 T
13581566 GTGGCAGCAG
Statistics
Matches: 818, Mismatches: 133, Indels: 62
0.81 0.13 0.06
Matches are distributed among these distances:
487 34 0.04
488 378 0.46
489 3 0.00
490 2 0.00
492 2 0.00
495 6 0.01
499 30 0.04
500 156 0.19
501 198 0.24
502 9 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (484 bp):
TCGACAGCACGCAGGGGGGACCGAGCCGATCCTGACTTGTGCTTTCTGCCTCTCCGCCGGTTGAG
CGCCCGCACGCCCTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
CAGACCGAAGGTTGTGGCAGTAGGACCCACAGCATGTAGAGGGGGACCGGCTGATCCCTGGCTTG
CGCATTATGCTTTTTCGACCAGCTCAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTATGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGC
AGGGGGGATCGGGTCGATCCCCGACTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACG
CTCGTTTCATGGGTTGACTTAGGCAGACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
CTAATCTAAGATCGGACTGGACCGAAGGT
Found at i:13582377 original size:26 final size:26
Alignment explanation
Indices: 13582341--13582393 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13582331 GTTGGCTTAG
*
13582341 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
* *
13582367 GCATATGGAGTTCATTCCCTATCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13582393 G
1 G
13582394 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13589530 original size:159 final size:159
Alignment explanation
Indices: 13589265--13589763 Score: 567
Period size: 159 Copynumber: 3.1 Consensus size: 159
13589255 GATCAGACCA
* ** * * *
13589265 GACCGAGGGTTGCGGCAATAGGATCGACAAG-ACGTA-AGGGGGACCGGGCCAATCCCCGACTTA
1 GACCGAGGGTTGTGGCAGCAGGATCGAC-AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTA
* * * * *
13589328 CGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
65 TGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
*
13589393 GGAGTTCATTCCTTGTCTAAGCCCCAGCCG
130 GGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * * * *
13589423 AACAGAGGGTTGTGGCAG-TGGAATCGGCAGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTG
1 GACCGAGGGTTGTGGCAGCAGG-ATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTA
* * * * * * *
13589487 TGCATTATGCCTCTCCGGTCGGCTCAGTGCCCGCAGGCTCGTTTCATGGGTTGACGTAGGCATAC
65 TGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
** * *
13589552 GGAGTTCATTCCCA-GTCTAAG-ATCGGATCG
130 GGAGTTCATT-CCATGTCTAAGCCCCAG-CCG
*** * * *
13589582 GACCGAGGGTTGCATCAGCAGGATCGACAGCACGCAGGGGGGGACTGGGTCGATCCCCGGCTTAT
1 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTAT
* * *
13589647 GCATTCTGCCTCTTCGGTCGATTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
66 GCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
*
13589712 GAGTTCATTCCATGTCTAAGCCCCAGCTG
131 GAGTTCATTCCATGTCTAAGCCCCAGCCG
*
13589741 GACCGAGGGTTGTGGTAGCAGGA
1 GACCGAGGGTTGTGGCAGCAGGA
13589764 CCAACAACGT
Statistics
Matches: 274, Mismatches: 59, Indels: 15
0.79 0.17 0.04
Matches are distributed among these distances:
157 4 0.01
158 28 0.10
159 236 0.86
160 6 0.02
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.22
Consensus pattern (159 bp):
GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTAT
GCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAGCCG
Found at i:13590212 original size:158 final size:158
Alignment explanation
Indices: 13589922--13590573 Score: 478
Period size: 158 Copynumber: 4.1 Consensus size: 158
13589912 TAAGCATACA
* * * *
13589922 GAGTTCATTCCCA-GTCTAAGATCAAATCGGACCGAGGGTTGTGACAGCAGGATCGACAGCATGC
1 GAGTTCATT-CCATGTCTAAGCTCCAATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGAATGC
* ** * * *
13589986 AGGGGGGGCCGAGCCGATTCTTGACTAGCGCATTCTGCCTCTCTGACCGACTGAGGGCCCGCACG
65 AGGGGGGGCCGAGCCGATCCCCGACTAGCGCATTCTGCCTCTCGGACCGACTGAGCGCCCACACG
*
13590051 CCCGTTTCATGGGTTGGCTTAGGCATAGG
130 CCCGTTTCATGGGTTGGCTTAGGCATAAG
* * * * *
13590080 GAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGTAGCGGGATCGACAGAATGCA
1 GAGTTCATTCCATGTCTAAGCTCCAATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGAATGCA
* * * * * *
13590145 GGGGGGGCC-AGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGA-TGAGCGCCCACAT
66 GGGGGGGCCGA-GCCGATCCCCGACTAGCGCATTCTGCCTCT-CGGACCGACTGAGCGCCCACAC
13590208 GCCCGTTTCATGGGTTGGCTTAGGCATAAG
129 GCCCGTTTCATGGGTTGGCTTAGGCATAAG
* * ** * * *
13590238 GAGTTCATTCCATGTGTAAGCTCCAACCGGACCGAGGGTTGTGGCAGTGGGA-CTGGCAGCATGT
1 GAGTTCATTCCATGTCTAAGCTCCAATCGGACCGAGGGTTGTGGCAGCAGGATC-GACAGAATGC
* * * * * *** * ***
13590302 AGAGGGGGACCGACCCGATCCCCGACTTGCGTATTATGCCTCTACGGTTAG-CTTAGCAG-TTGC
65 AG-GGGGGGCCGAGCCGATCCCCGACTAGCGCATTCTGCCTCT-CGGACCGACTGAGC-GCCCAC
* * * *
13590365 ACGCTCGTTTCGTGGGTTGACTTAGGCATACG
127 ACGCCCGTTTCATGGGTTGGCTTAGGCATAAG
* * ** * * * * * * *
13590397 GAGTTCATTCCCA-GTGTAAGATCGGACCGGACCGAGGGTTGCGG-TGCAGGATCAATAGCACGC
1 GAGTTCATT-CCATGTCTAAGCTCCAATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGAATGC
** * * * * * * * * * ** **
13590460 -GGGGGGATCGGGTCAATCCTCTG-CTCGTGCATTCTACCTCTCCGATCGACTGAGCTTCCGTAC
65 AGGGGGGGCCGAGCCGATCC-CCGACTAGCGCATTCTGCCTCTCGGACCGACTGAGCGCCCACAC
* * * *
13590523 TCTCGTTTCGTGGGTTGGCTTAGGCATATG
129 GCCCGTTTCATGGGTTGGCTTAGGCATAAG
13590553 GAGTTCATTCCATGTCTAAGC
1 GAGTTCATTCCATGTCTAAGC
13590574 ATACGGAGTT
Statistics
Matches: 394, Mismatches: 86, Indels: 30
0.77 0.17 0.06
Matches are distributed among these distances:
155 7 0.02
156 76 0.19
157 8 0.02
158 187 0.47
159 111 0.28
160 5 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCATGTCTAAGCTCCAATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGAATGCA
GGGGGGGCCGAGCCGATCCCCGACTAGCGCATTCTGCCTCTCGGACCGACTGAGCGCCCACACGC
CCGTTTCATGGGTTGGCTTAGGCATAAG
Found at i:13590582 original size:26 final size:26
Alignment explanation
Indices: 13590546--13590598 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13590536 GTTGGCTTAG
*
13590546 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13590572 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13590598 G
1 G
13590599 ATCGTGCCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13592036 original size:26 final size:26
Alignment explanation
Indices: 13592000--13592052 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13591990 GTTGACTTAG
13592000 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13592026 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13592052 G
1 G
13592053 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13592327 original size:26 final size:26
Alignment explanation
Indices: 13592298--13592350 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13592288 GTCAACTTAG
*
13592298 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
13592324 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13592350 G
1 G
13592351 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13592517 original size:298 final size:298
Alignment explanation
Indices: 13591965--13592558 Score: 809
Period size: 298 Copynumber: 2.0 Consensus size: 298
13591955 TTGGCTGGCA
* * **
13591965 GAGCACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
1 GAGCACCCGCACACTAGTTTCGTGGGTCAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
* **
13592030 ATGGAGTTCATTCCCAGTCTAAGATCAGACTGAATCGAGGGTTGCCGTAGCAAGATTGACAGCAC
66 ACGGAGTTCATTCCCAGTCTAAGATCAGACTGAATCGAGGGTTGCCGTAGCAAGATCAACAGCAC
* * * * * * *
13592095 GCAGGGTGGATCGGGTCGATCCCCGGCTCACGCATTCTGCCTCTCTGGTCGGTCGAGCACCTGCA
131 GCAGGGGGGACCGGGCCGATCCCCGACTAACGCATTCTGCCTCTCCGGTCGGTCGAGCACCCGCA
*
13592160 CGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-CT
196 CGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTACATTCCATGTCTAAGCCCCAGCCGGATC-
* *
13592224 GAGGGTTGTGGCAGTGGGACCGGTAGCACGCAGAGGGTT
260 GAGGGTTATGGCAGTGGGACCGGCAGCACGCAGAGGGTT
* * *
13592263 GAGCGCCCGCACACTAGTTTCGTGGGTCAACTTAGGCATATGGAGTTCATCCCTAGTCTAAGCAT
1 GAGCACCCGCACACTAGTTTCGTGGGTCAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
* * * * *
13592328 ACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGATCGAGGGTTG-TGATAGCAGGATCAATAGC
66 ACGGAGTTCATTCCCAGTCTAAGATCAGACT-GAATCGAGGGTTGCCG-TAGCAAGATCAACAGC
* * * * * *
13592391 ATGCAGGGGGGACCTGGCCGATTCTCGACTAACGTATTCTGCCTCTCCGGTTGG-CTGAGCACCC
129 ACGCAGGGGGGACCGGGCCGATCCCCGACTAACGCATTCTGCCTCTCCGGTCGGTC-GAGCACCC
* *
13592455 GCACGCCCGTTTCATGGGTTGGTTTAGGCATAGGGAGTACATTCCATGTCTAAGCCCCAGCCGGA
193 GCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTACATTCCATGTCTAAGCCCCAGCCGGA
* *
13592520 TCGAGGGTTATGGCAGTGGGACCGGCAGCATGTAGAGGG
258 TCGAGGGTTATGGCAGTGGGACCGGCAGCACGCAGAGGG
13592559 GGACCGGGTC
Statistics
Matches: 257, Mismatches: 35, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
297 3 0.01
298 253 0.98
299 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (298 bp):
GAGCACCCGCACACTAGTTTCGTGGGTCAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACTGAATCGAGGGTTGCCGTAGCAAGATCAACAGCAC
GCAGGGGGGACCGGGCCGATCCCCGACTAACGCATTCTGCCTCTCCGGTCGGTCGAGCACCCGCA
CGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTACATTCCATGTCTAAGCCCCAGCCGGATCG
AGGGTTATGGCAGTGGGACCGGCAGCACGCAGAGGGTT
Found at i:13592665 original size:159 final size:158
Alignment explanation
Indices: 13592448--13592826 Score: 355
Period size: 158 Copynumber: 2.4 Consensus size: 158
13592438 CGGTTGGCTG
* * * ** * * * * * *
13592448 AGCACCCGCACGCCCGTTTCATGGGTTGGTTTAGGCATAGGGAGTACATTCCATGTCTAAGCCCC
1 AGCACCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCAAAGTCTAAG-ACC
* *** * * *
13592513 AG-CCGGATCGAGGGTTATGGCAGTGGGACCGGCAGCATGTAGAGGGGGACCGGGTCGATCCTCG
65 AGACCAGATCGAGGGTTATGGCAGCAAGACCGACAGCACGTAG-GGGGGACCGGGTCGATCCCCG
* * *
13592577 GCTTGTGCATTATACCTCTTCGACCGGCTC
129 GCTTGCGCATTATACCTCTCCGACCGGCAC
* * * * * *
13592607 AGCGCCCGCATGCTCATTTCATGGGTTGACTTATGCATACGAAGTTTATTCATAGTCTAAGATCG
1 AGCACCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCAAAGTCTAAGACCA
* * * ** *
13592672 GATCAGATCGAGGGTTGTGGTAGCAAGATTGACAGCACGTAGGGGGGACCTGGTCGATCCCCGGC
66 GACCAGATCGAGGGTTATGGCAGCAAGACCGACAGCACGTAGGGGGGACCGGGTCGATCCCCGGC
* * *
13592737 TTGCGCATTCTGCCTCTCCGACCGGCAG
131 TTGCGCATTATACCTCTCCGACCGGCAC
* * * * * *
13592765 AGCACCTGCATGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCAAAGTCTAAGA
1 AGCACCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCAAAGTCTAAGA
13592827 TTTTGAGCCA
Statistics
Matches: 173, Mismatches: 46, Indels: 3
0.78 0.21 0.01
Matches are distributed among these distances:
158 97 0.56
159 76 0.44
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
AGCACCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCAAAGTCTAAGACCA
GACCAGATCGAGGGTTATGGCAGCAAGACCGACAGCACGTAGGGGGGACCGGGTCGATCCCCGGC
TTGCGCATTATACCTCTCCGACCGGCAC
Found at i:13594330 original size:26 final size:26
Alignment explanation
Indices: 13594294--13594348 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
13594284 TGGGTTGGCT
*
13594294 TAAGGATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
13594320 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
13594346 TAA
1 TAA
13594349 AAGTTTAAGC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:13595440 original size:159 final size:155
Alignment explanation
Indices: 13595014--13595614 Score: 474
Period size: 158 Copynumber: 3.8 Consensus size: 155
13595004 GTAGCGGGAT
* * * * *
13595014 CGGTAGCATGCAGAGGGGGATCGTGCCGATCCTTGGCTTGCGCATTATGCCTCTCCGGCCGGCTC
1 CGGTAGCACGCAGA-GGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCC-GCTGGCTC
*
13595079 AGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
64 AG-GCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGACCA
** * *
13595144 GACTGGACTGAGGGTTATGGCAGTAGGAT
127 GACTGGACCAAGGGTTATCGCAGTAGGAC
* * * * * * *
13595173 CGATAGCACGCAGAGGGGACCGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGTCAG-TCG
1 CGGTAGCACGCAGAGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGCT-GGCTC-
* * * * * *
13595237 AGGACTCGCATGCCCATTTTGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAGGCCCC
64 AGG-CCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAG-ACC
* *
13595302 AGTC-GGACCAAGGGTTGTCGCAGTAGGAC
126 AGACTGGACCAAGGGTTATCGCAGTAGGAC
* *
13595331 CGGTAGCACGCAGAGGGGAACCGGGCAGATCCTCGGCTTACGCATTATGCCTCTCCGACTGGCTC
1 CGGTAGCACGCAGAGGGG-ACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCG-CTGGCTC
* * ** * *
13595396 AGTGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCA
64 AG-GCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGACCA
*** * * *
13595461 GACCAAACCGAA-GGTT-GCGGCAGCAGGAT
127 GACTGGACC-AAGGGTTATC-GCAGTAGGAC
* * * ** * * * * * * *
13595490 CGATAGCACACAAGAGGTGATTGGGCCGGT-CTCGGCTTGTGCATTCTACCTCTTCGATCGGCTG
1 CGGTAGCACGC-AGAGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGCT-GGCTC
* * * * * * *
13595554 AGCACCCGTAAGCTCGTTTCGTGCGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
64 AG-GCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAG
13595615 CATACGAAGT
Statistics
Matches: 353, Mismatches: 73, Indels: 33
0.77 0.16 0.07
Matches are distributed among these distances:
157 11 0.03
158 202 0.57
159 125 0.35
160 15 0.04
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (155 bp):
CGGTAGCACGCAGAGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGCTGGCTCAG
GCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGACCAGACT
GGACCAAGGGTTATCGCAGTAGGAC
Found at i:13595589 original size:317 final size:317
Alignment explanation
Indices: 13595014--13595612 Score: 770
Period size: 317 Copynumber: 1.9 Consensus size: 317
13595004 GTAGCGGGAT
* * * * * * * *
13595014 CGGTAGCATGCAGAGGGGGATCGTGCCGATCCTTGGCTTGCGCATTATGCCTCTCCGGCCGGCTC
1 CGGTAGCACGCAGAGGGGAACCGGGCAGATCCTCGGCTTACGCATTATGCCTCTCCGACCGGCTC
**
13595079 AGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
66 AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
*** * * * * *
13595144 GACTGGACTGAGGGTTATGGCAGTAGGATCGATAGCACGCAGAGGGGACCGGGCCGATCCCCGAC
131 GACCAAACCGAAGGTTACGGCAGCAGGATCGATAGCACACAGAGGGGACCGGGCCGATCCCCGAC
* * * * * *
13595209 TTGCGCATTCTACCTCTCCGGTCAGTCGAGGACTCGCATGCCCATTTTGTGGGTTGACTTAGGCA
196 TTGCGCATTCTACCTCTCCGATCAGTCGAGCACCCGCAAGCCCATTTCGTGCGTTGACTTAGGCA
*
13595274 TAGGGAGTTCATTCCATGTCTAGGCCCCAGTCGGACCAAGGGTTGTCGCAGTAGGAC
261 TACGGAGTTCATTCCATGTCTAGGCCCCAGTCGGACCAAGGGTTGTCGCAGTAGGAC
*
13595331 CGGTAGCACGCAGAGGGGAACCGGGCAGATCCTCGGCTTACGCATTATGCCTCTCCGACTGGCTC
1 CGGTAGCACGCAGAGGGGAACCGGGCAGATCCTCGGCTTACGCATTATGCCTCTCCGACCGGCTC
* * * *
13595396 AGTGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCA
66 AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * ** * * *
13595461 GACCAAACCGAAGGTTGCGGCAGCAGGATCGATAGCACACAAGAGGTGATTGGGCCGGT-CTCGG
131 GACCAAACCGAAGGTTACGGCAGCAGGATCGATAGCACAC-AGAGGGGACCGGGCCGATCCCCGA
* * * * * * *
13595525 CTTGTGCATTCTACCTCTTCGATC-GGCTGAGCACCCGTAAGCTCGTTTCGTGCGTTGGCTTAGG
195 CTTGCGCATTCTACCTCTCCGATCAGTC-GAGCACCCGCAAGCCCATTTCGTGCGTTGACTTAGG
13595589 CATACGGAGTTCATTCCATGTCTA
259 CATACGGAGTTCATTCCATGTCTA
13595613 AGCATACGAA
Statistics
Matches: 236, Mismatches: 44, Indels: 4
0.83 0.15 0.01
Matches are distributed among these distances:
316 2 0.01
317 220 0.93
318 14 0.06
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (317 bp):
CGGTAGCACGCAGAGGGGAACCGGGCAGATCCTCGGCTTACGCATTATGCCTCTCCGACCGGCTC
AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
GACCAAACCGAAGGTTACGGCAGCAGGATCGATAGCACACAGAGGGGACCGGGCCGATCCCCGAC
TTGCGCATTCTACCTCTCCGATCAGTCGAGCACCCGCAAGCCCATTTCGTGCGTTGACTTAGGCA
TACGGAGTTCATTCCATGTCTAGGCCCCAGTCGGACCAAGGGTTGTCGCAGTAGGAC
Found at i:13595639 original size:26 final size:26
Alignment explanation
Indices: 13595588--13595640 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
13595578 GTTGGCTTAG
* *
13595588 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGCCTAA
*
13595614 GCATACGAAGTTTATTCCCA-GCCTAA
1 GCATACGAAGTTCATT-CCATGCCTAA
13595640 G
1 G
13595641 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGCCTAA
Found at i:13595813 original size:26 final size:26
Alignment explanation
Indices: 13595783--13595835 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13595773 GTTGACTTAG
*
13595783 GCATACAGAGTTCATCCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13595809 GCATACAGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13595835 G
1 G
13595836 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13596804 original size:26 final size:26
Alignment explanation
Indices: 13596775--13596827 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13596765 GTTGACTTAG
*
13596775 GCATACGAAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13596801 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13596827 G
1 G
13596828 ATCAAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13597184 original size:159 final size:157
Alignment explanation
Indices: 13596801--13597293 Score: 422
Period size: 159 Copynumber: 3.1 Consensus size: 157
13596791 CCCAGTCTAA
*
13596801 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGACAGCAGGATCGACA
* * * * * *
13596866 GCACGTAGGGGGATCGAGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGGTTGGTTGAGCGCCC
66 GCAAGCAGGGGGATCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTTGGCTCAGCGCCC
* * *
13596931 GCACGCCCTTTTCATGGGTTGGCTTAG
131 GCACACCATTTTCATGGGTTGACTTAG
* ** * * * * *
13596958 GCATACGAAGTTCATT-CCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGGCAGCGGGACTTG-
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCGGATCGAGGGTTGCGACAGCAGGA-TCGA
* * * * *
13597021 CAGCAAGCAGATGGGGTTCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGTTGGCTCAGC
64 CAGCAAGCAG--GGGGATCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTTGGCTCAGC
* * *
13597086 GTCCGTACACTCATTTT-GTGGGTTGACTTAG
127 GCCCGCACAC-CATTTTCATGGGTTGACTTAG
* * * * * * *
13597117 GCATACGGAGTTCATTCCCAGTCTATGATCGAACCGGACCAAAGGTTACGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * *** * * *
13597182 GCACA-CAGGGGGGGACCGGGCCGATCCTC-GACTTACGCATTCTACCTCTCCGACCGACTGAGT
66 GCA-AGCA--GGGGGATCGAGCCGATCCCCAG-CTTGCGCATTATGCCTCTCCGGTTGGCTCAGC
* *
13597245 GCCCGCACGCTCA-TTTCATGGGTTGGCTTAG
127 GCCCGCACAC-CATTTTCATGGGTTGACTTAG
*
13597276 GCATACGGAGTTAATTCC
1 GCATACGGAGTTCATTCC
13597294 ATGTCTATGC
Statistics
Matches: 264, Mismatches: 60, Indels: 22
0.76 0.17 0.06
Matches are distributed among these distances:
156 3 0.01
157 55 0.21
158 8 0.03
159 188 0.71
160 9 0.03
161 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGACAGCAGGATCGACA
GCAAGCAGGGGGATCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTTGGCTCAGCGCCC
GCACACCATTTTCATGGGTTGACTTAG
Found at i:13598202 original size:26 final size:26
Alignment explanation
Indices: 13598172--13598227 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
13598162 TGGGTTGGCT
* *
13598172 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACAGAGTTAATTGCCA-GTC
*
13598198 TAAGCATTCAGAGTTAATTGCCAGTC
1 TAAGCATACAGAGTTAATTGCCAGTC
13598224 TAAG
1 TAAG
13598228 ATTGGATCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACAGAGTTAATTGCCAGTC
Found at i:13598678 original size:353 final size:354
Alignment explanation
Indices: 13597917--13598750 Score: 835
Period size: 353 Copynumber: 2.4 Consensus size: 354
13597907 GCAGTGGGAC
* * * * *
13597917 CGACAGCATGTAGAGGGGGACCG-GACCGATCCCCGACTTGCGCATTATGCCTCTCCG-GTCGGC
1 CGACAGCACGTAGA-GGGGACCGAG-CTGATCCTCGACTTACGCATTATGCCTCTCCGACT-GGC
* * * * * *
13597980 TCAACGCTC-GAATGCTTGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
63 TCAGCAC-CAGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** * * *
13598044 TCAGACTGAACCAAGGGTTGCGATAGCAGGATCGATAGCACACAGTGGGGGACCGGGAAGCTCCC
127 TCAGACCAAACCAAGGGTTGCGACAACAGGATCGATAGCACACAG-GGGGGACCGGGAAGATCCC
** * *
13598109 TGACTTGTGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCCCACACTCGTTTCATGGGTTGGCTTA
191 TGACTTGCACATTCTGCCTCTCCGGCCAGCTGAGCGCCCCCACACTCATTTCATGGATTGGCTTA
* * ** *
13598174 AGCATACGGAGTTCATTCCATGTCTAAGCATTCAGAGTTAATTGCCAGTCTAAGATTGGATCAAA
256 AGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTAATTGCCAGTCTAAGATCAGACCAAA
** * * * *
13598239 TTGATGGTTGCGGTAGTAGAACCAGCAGCAGGAT
321 CCGAGGGTTGCGGCAGCAGAACAAGCAGCAGGAT
* * * *
13598273 CGATAGCACGTAGAGGGGACCGGGCTGATCCTCGACTTACGCATTATGCCTCTCTGA-TCGGTTC
1 CGACAGCACGTAGAGGGGACCGAGCTGATCCTCGACTTACGCATTATGCCTCTCCGACT-GGCTC
* ** *
13598337 AGCACCCGTGCGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA
65 AGCACCAGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * ** * *
13598402 GACCAAACCGAGGGTTGTGGCAACAGGATCGATAGCACGCA-GGGGGATCGGGCCGAT-CTTCGG
130 GACCAAACCAAGGGTTGCGACAACAGGATCGATAGCACACAGGGGGGACCGGGAAGATCCCT-GA
* * * ** * *
13598465 CTTGCACATTCTGCCTCTCCGGTC-GACTGAGTGCCCGCATGCTCATTTCGTGGATTGGCTTAGG
194 CTTGCACATTCTGCCTCTCCGGCCAG-CTGAGCGCCCCCACACTCATTTCATGGATTGGCTTAAG
* * * * **
13598529 CATATAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT-CCTAGTCTGAGATCAGACCGGAC
258 CATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTAATTGCC-AGTCTAAGATCAGACCAAAC
* *
13598593 CGAGGGTTGCGGCAGCAGGACAAGTAGCAGGAT
322 CGAGGGTTGCGGCAGCAGAACAAGCAGCAGGAT
* * * * *
13598626 CGACAGTACGTA-AGGGGGACC-AGATCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACTGGCT
1 CGACAGCACGTAGA-GGGGACCGAGCT-GATCCTCGACTTACGCATTATGCCTCTCCGACTGGCT
* * * *
13598689 GAGCGCCAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
64 CAGCACCAGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
13598751 CCCCAGCCGA
Statistics
Matches: 392, Mismatches: 76, Indels: 23
0.80 0.15 0.05
Matches are distributed among these distances:
352 11 0.03
353 236 0.60
354 2 0.01
355 130 0.33
356 13 0.03
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (354 bp):
CGACAGCACGTAGAGGGGACCGAGCTGATCCTCGACTTACGCATTATGCCTCTCCGACTGGCTCA
GCACCAGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCAAACCAAGGGTTGCGACAACAGGATCGATAGCACACAGGGGGGACCGGGAAGATCCCTGACT
TGCACATTCTGCCTCTCCGGCCAGCTGAGCGCCCCCACACTCATTTCATGGATTGGCTTAAGCAT
ACAGAGTTCATTCCATGTCTAAGCATACAGAGTTAATTGCCAGTCTAAGATCAGACCAAACCGAG
GGTTGCGGCAGCAGAACAAGCAGCAGGAT
Found at i:13598938 original size:26 final size:26
Alignment explanation
Indices: 13598908--13598960 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
13598898 GTTGACTTAG
13598908 GCATAC-AGAGTTCA-TCGCCAGTCTAA
1 GCATACGA-AGTTCATTC-CCAGTCTAA
13598934 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13598960 G
1 G
13598961 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13599582 original size:26 final size:26
Alignment explanation
Indices: 13599552--13599601 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
13599542 GGCTTAGGCA
13599552 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGGAGTTCATTCCCA-GTCTAAGCG
13599578 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
13599602 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:13599883 original size:456 final size:456
Alignment explanation
Indices: 13599000--13599887 Score: 1415
Period size: 457 Copynumber: 1.9 Consensus size: 456
13598990 GGATCGGCAC
* * * *
13599000 CACGCAGAGGGGATCGGGCTGATCCCCCGCTGTGCATTCTACCTCTCCGGTCGGCTGAGCGCCTG
1 CACGCAGAGGGGATCGGGCCGATCCCCAGCTGCGCATTATACCTCTCCGGTCGGCTGAGCGCCTG
* * * * *
13599065 CACGGTCCGTTTCGTGGGTTGGCCTAGGCATAGGGAGTTCATTCCATGTTTAAGCGTATGGAGTT
66 CACGCTCCGTTTCATGGGTTGGCCTAGGCATACGGAGTTCATTCCATGTCTAAGCGTACGGAGTT
* *
13599130 CATTCCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGTGCTGGAGCCATA
131 CATTCCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGCCATGTGCTGGAGCCACA
*
13599195 TCTTTTTCACCCAAGGCACCATCACCAGAGAGCCTAACCGGTGGCGTTGGGGGTTCCGATAATTG
196 TCTTTTTCACCCAAGGCACCATCACCAGAGAGCCTAACCGGTGGCATTGGGGGTTCCGATAATTG
* * * *
13599260 GAGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGTGTCACAGGCTCCA
261 GAGGGGGCCGAGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGTGTCACAGGCTCCA
*
13599325 ACCTTAGACTCAGAAACCGTGCAGCTTGAGGCTTGGAATCTCCTCTTTTATGCCTAAGTCAGCCT
326 ACCTTAGACTCAGAAACCGTGCAGCCTGAGGCTTGGAATCTCCTCTTTTATGCCTAAGTCAGCCT
*
13599390 AAAACACAAGCGTACGGGCACTAGAACAACGGAAAGGGCTGAAGGTTGTGGCAGCGAGATCAGTA
391 AAAACACAAGCGTACGGGCACTAGAACAACAGAAAGGGCTGAAGGTTGTGGCAGCGAGATCAGTA
13599455 G
456 G
* *
13599456 CACGCAGAGGGGGATCGGGCCGATCCCTAGCTTGCGCATTATGCCTCTCCGG-CTGGCTGAGCG-
1 CACGCAGA-GGGGATCGGGCCGATCCCCAGC-TGCGCATTATACCTCTCCGGTC-GGCTGAGCGC
*
13599519 CTCGCACGCT-CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCGTACGG
63 CT-GCACGCTCCGTTTCATGGGTTGGCCTAGGCATACGGAGTTCATTCCATGTCTAAGCGTACGG
*
13599583 AGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGCCATGTGCTGGTGC
127 AGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGCCATGTGCTGGAGC
* * ** ** * *
13599648 CGCATTTTTTTCACCCGGGGCACCATCGTCGGAGAGCCTAACCGGTGGCATTGGGGGTTCCGATG
192 CACATCTTTTTCACCCAAGGCACCATCACCAGAGAGCCTAACCGGTGGCATTGGGGGTTCCGATA
* *
13599713 ATTGG-GGGGGCCGAGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGTGTGACGGGC
257 ATTGGAGGGGGCCGAGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGTGTCACAGGC
*
13599777 TCCAACCTTAGACTCAGAAACCGTGCGGCCTGAGGCTTGGAATCTCCTCTTTTATGCCTAAGTCA
322 TCCAACCTTAGACTCAGAAACCGTGCAGCCTGAGGCTTGGAATCTCCTCTTTTATGCCTAAGTCA
13599842 GCCTAAAACACAAGCGTACGGGCACTAGAACAACAGAAAGGGCTGA
387 GCCTAAAACACAAGCGTACGGGCACTAGAACAACAGAAAGGGCTGA
13599888 TTACACAAGT
Statistics
Matches: 395, Mismatches: 33, Indels: 8
0.91 0.08 0.02
Matches are distributed among these distances:
456 169 0.43
457 194 0.49
458 32 0.08
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (456 bp):
CACGCAGAGGGGATCGGGCCGATCCCCAGCTGCGCATTATACCTCTCCGGTCGGCTGAGCGCCTG
CACGCTCCGTTTCATGGGTTGGCCTAGGCATACGGAGTTCATTCCATGTCTAAGCGTACGGAGTT
CATTCCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGCCATGTGCTGGAGCCACA
TCTTTTTCACCCAAGGCACCATCACCAGAGAGCCTAACCGGTGGCATTGGGGGTTCCGATAATTG
GAGGGGGCCGAGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGTGTCACAGGCTCCA
ACCTTAGACTCAGAAACCGTGCAGCCTGAGGCTTGGAATCTCCTCTTTTATGCCTAAGTCAGCCT
AAAACACAAGCGTACGGGCACTAGAACAACAGAAAGGGCTGAAGGTTGTGGCAGCGAGATCAGTA
G
Found at i:13602224 original size:191 final size:190
Alignment explanation
Indices: 13601887--13602269 Score: 739
Period size: 191 Copynumber: 2.0 Consensus size: 190
13601877 TTAACTCCTC
13601887 CAACTCTGGTGGAGACATTCGGTAAGGGGCTCTAGCTGGTGGCTTAGCCTCGGACACCAGCTTGA
1 CAACTCTGGTGGAGACATTCGGTAAGGGGCTCTAGCTGGTGGCTTAGCCTCGGACACCAGCTTGA
13601952 TCTTGTGGTCACCTCTCTCTTAGGTGGTAGCTTGCTAGGTAGCTTTGCAGGCATCACATCACTAA
66 TCTTGTGGTCACCTCTCTCTTAGGTGGTAGCTTGCTAGGTAGCTTTGCAGGCATCACATCACTAA
13602017 AGGTCTTCAGCACCTTTAACACCTCCAAGGGTGACTCGATCTACTTCTCCCTCGGCTCAT
131 AGGTCTTCAGCACCTTTAACACCTCCAAGGGTGACTCGATCTACTTCTCCCTCGGCTCAT
* *
13602077 CAACTCTGGTGGAGACATTCGGTAAGGTGCTCTAGCTGGTGGCTTGGCCTCGGACACCAGCTTGA
1 CAACTCTGGTGGAGACATTCGGTAAGGGGCTCTAGCTGGTGGCTTAGCCTCGGACACCAGCTTGA
13602142 TCTTGTGGTCCACCTCTCTCTTAGGTGGTAGCTTGCTAGGTAGCTTTGCAGGCATCACATCACTA
66 TCTTGTGGT-CACCTCTCTCTTAGGTGGTAGCTTGCTAGGTAGCTTTGCAGGCATCACATCACTA
13602207 AAGGTCTTCAGCACCTTTAACACCTCCAAGGGTGACTCGATCTACTTCTCCCTCGGCTCAT
130 AAGGTCTTCAGCACCTTTAACACCTCCAAGGGTGACTCGATCTACTTCTCCCTCGGCTCAT
13602268 CA
1 CA
13602270 TATTTTAGGG
Statistics
Matches: 190, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
190 72 0.38
191 118 0.62
ACGTcount: A:0.19, C:0.28, G:0.24, T:0.28
Consensus pattern (190 bp):
CAACTCTGGTGGAGACATTCGGTAAGGGGCTCTAGCTGGTGGCTTAGCCTCGGACACCAGCTTGA
TCTTGTGGTCACCTCTCTCTTAGGTGGTAGCTTGCTAGGTAGCTTTGCAGGCATCACATCACTAA
AGGTCTTCAGCACCTTTAACACCTCCAAGGGTGACTCGATCTACTTCTCCCTCGGCTCAT
Found at i:13604631 original size:26 final size:26
Alignment explanation
Indices: 13604595--13604647 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13604585 GTTGGCTTAG
*
13604595 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13604621 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13604647 G
1 G
13604648 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Done.