Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 99 of 402
Found at i:13605079 original size:159 final size:158
Alignment explanation
Indices: 13604818--13605120 Score: 408
Period size: 159 Copynumber: 1.9 Consensus size: 158
13604808 AGATCAGACT
* * * * * *
13604818 GAGGGTTGTGGTAGCAGGATCAACAGCACGCAAGGGGGATTGGGCCGATCCCCGTCTTGGGCATT
1 GAGGGTTGTGGCAGCAGGACCAACACCACGCAAGGGGGACTGGGCCGATCCCCGGCTTGCGCATT
* * * * * *
13604883 CTTCCTCTTTGACCGACTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
66 CTGCCTCTCTGACCGACTGAGCACACACACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTT
13604948 CATTCCATGTCTAATCCCCAGCCGAACC
131 CATTCCATGTCTAATCCCCAGCCGAACC
* *
13604976 GAGGGTTGTGGCAGCGGGACCAACACCACGCAGAGGGGGACTGGGTCGATCCCCGGCTTGCGCAT
1 GAGGGTTGTGGCAGCAGGACCAACACCACGCA-AGGGGGACTGGGCCGATCCCCGGCTTGCGCAT
* ** ** * *
13605041 TCTGCCTCTCTGGCCGGTTGAGCACATGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGT
65 TCTGCCTCTCTGACCGACTGAGCACACACACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGT
13605106 TCATTCCATGTCTAA
130 TCATTCCATGTCTAA
13605121 GCATACGGAG
Statistics
Matches: 123, Mismatches: 21, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
158 28 0.23
159 95 0.77
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GAGGGTTGTGGCAGCAGGACCAACACCACGCAAGGGGGACTGGGCCGATCCCCGGCTTGCGCATT
CTGCCTCTCTGACCGACTGAGCACACACACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTT
CATTCCATGTCTAATCCCCAGCCGAACC
Found at i:13605132 original size:26 final size:26
Alignment explanation
Indices: 13605095--13605147 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13605085 GTTGGCTTAG
13605095 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
13605121 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13605147 G
1 G
13605148 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13605824 original size:24 final size:26
Alignment explanation
Indices: 13605797--13605847 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
13605787 GTTGACTTAG
*
13605797 GCATACGGAG-TCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
13605821 GCATGCGGGGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13605847 G
1 G
13605848 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 8 0.36
25 3 0.14
26 11 0.50
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13606333 original size:26 final size:26
Alignment explanation
Indices: 13606297--13606347 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13606287 TGGCTTAGCC
13606297 ATACGGAGTTCATT-CCATGTCTAAGG
1 ATACGGAGTTCATTCCCA-GTCTAAGG
13606323 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
13606348 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:13607158 original size:159 final size:158
Alignment explanation
Indices: 13606845--13607295 Score: 471
Period size: 159 Copynumber: 2.8 Consensus size: 158
13606835 GGGTTGCAGT
* * * *
13606845 AGCAAGATCGACAGCACCCA-AGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTTCCTCTCCG
1 AGCAGGATCGACAGCACGCAGAGGGGGACCGGG-CGATCCCCGGCTTGCGCATTCTACCTCTCCG
* * * * * * *
13606909 ATTGGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTTTGGCATAGGGAGTTCATTCCATGTC
65 GTCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* *
13606974 TAAGCACCATCCGGACTGAGGGTTGTGGC
130 TAAGCACCATCCGGACCGAGAGTTGTGGC
* * * * * * *
13607003 AGCGGGATTGGCAGGACGCAGAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCG
1 AGCAGGATCGACAGCACGCAGAGGGGGACCGGG-CGATCCCCGGCTTGCGCATTCTACCTCTCCG
* * * * *
13607068 GTCGGCTCAATGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GT
65 GTCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGT
* * *
13607132 CTAAG-ATCAGAT-CGGACCGATAGTTGTGGT
129 CTAAGCA-C-CATCCGGACCGAGAGTTGTGGC
* * * * *
13607162 AGCAGGATCGATAGCACGTAGGGGGGGACCGGGCTGATCCCCGGCTTGTGCATTCTACCTTTCC-
1 AGCAGGATCGACAGCACGCAGAGGGGGACCGGGC-GATCCCCGGCTTGCGCATTCTACCTCTCCG
* * * *
13607226 GACTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGCCATATGGAGTTCATTCCATGT
65 GTC-GGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
13607291 CTAAG
129 CTAAG
13607296 GATATGGAGT
Statistics
Matches: 237, Mismatches: 49, Indels: 13
0.79 0.16 0.04
Matches are distributed among these distances:
158 21 0.09
159 211 0.89
160 5 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
AGCAGGATCGACAGCACGCAGAGGGGGACCGGGCGATCCCCGGCTTGCGCATTCTACCTCTCCGG
TCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCACCATCCGGACCGAGAGTTGTGGC
Found at i:13607307 original size:26 final size:26
Alignment explanation
Indices: 13607271--13607321 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13607261 TGGCTTAGCC
13607271 ATATGGAGTTCATT-CCATGTCTAAGG
1 ATATGGAGTTCATTCCCA-GTCTAAGG
13607297 ATATGGAGTTCATTCCCAGTCTAAG
1 ATATGGAGTTCATTCCCAGTCTAAG
13607322 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (26 bp):
ATATGGAGTTCATTCCCAGTCTAAGG
Found at i:13607676 original size:26 final size:26
Alignment explanation
Indices: 13607646--13607699 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
13607636 TGGGTTGACT
*
13607646 TAGGCATACGTAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
*
13607672 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
13607698 TA
1 TA
13607700 AGATCGGATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:13608199 original size:26 final size:26
Alignment explanation
Indices: 13608149--13608201 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13608139 GTTGGCTTAG
*
13608149 GCATATAGAGTTCATTCCATGTCTAA
1 GCATATAGAGTTCATTCCATATCTAA
*
13608175 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATATAGAGTTCATT-CCATATCTAA
13608201 G
1 G
13608202 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCATATCTAA
Found at i:13608873 original size:26 final size:26
Alignment explanation
Indices: 13608844--13608896 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13608834 TTTGGCTTAG
13608844 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13608870 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13608896 G
1 G
13608897 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13609938 original size:26 final size:26
Alignment explanation
Indices: 13609908--13609960 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13609898 GTTGGCTTAG
*
13609908 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13609934 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13609960 G
1 G
13609961 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13610302 original size:367 final size:343
Alignment explanation
Indices: 13609527--13610328 Score: 906
Period size: 367 Copynumber: 2.3 Consensus size: 343
13609517 TCTCTGGTTG
* * *
13609527 GCTGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCA-GTCTAA
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCAT-TCCATGTCTAA
* * * *
13609591 GCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAACGATTGCGGTAGCAGGATCGGCA
65 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAACGATAGCGGTAGCAGGATCGACA
* * * * * *
13609656 GCACGCAGGGGGGACCAGGTCGATCCTCGATTTACGCATTCTGCCTCTCCGATCTACTGAGCTCC
130 GCACGCAGGGGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCAGATCGACTGAGCGCC
* * * * * *
13609721 CGTATGCCTGTTTCATGGGTTGGCTAAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
195 CGCACGCCTATTTCATGGGTTGGCTAAGGCATACGGAGTTAATTCCATGTCTAAGCCCCAGCCAG
* * * *
13609786 ACTGAGGGTTATGGCAGTGGGATCGGCAGGACGTAGAGGGGGACCGGGCCAATCCCCAGCTTGCG
260 ACTGAGGGTTATGGCAGCGAGATCGGCAGCACGTAGAGGGGAACCGGGCCAATCCCCAGCTTGCG
* * *
13609851 CATTTTGCCTCTCCGGTCG
325 CATTATGCCTCTCCGGCCA
* *
13609870 GCTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
* *
13609935 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGTAGCAGGACTAGTAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACC-A-----ACGATAGC--G----GTAG
* * * * *
13610000 CAGGATCGACAGCATGCAGGGGGGACCTGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCAGGTC
119 CAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCAGATC
** **
13610065 GGTTGAGCGCCCGCACG-CTCATTTCATGGGTTGGCTTTGGCATACGGAGTTAATTCCATGTCTA
184 GACTGAGCGCCCGCACGCCT-ATTTCATGGGTTGGCTAAGGCATACGGAGTTAATTCCATGTCTA
*
13610129 AGCCCCAGCTAGACTGAGGATTGTGGTAGCAGGACTGGCAGCGAGATCGGCAGCACGTAGAGGGG
248 AGCCCCAGCCAGACTGAGG---GT--T------A-TGGCAGCGAGATCGGCAGCACGTAGAGGGG
* ** * * *
13610194 AATCGGGCTGATCCCCGGCTTGCGCATTATGCCTTTCTGGCCA
301 AACCGGGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGGCCA
***
13610237 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
*
13610302 CATACGGAGTGCATTCCCAGTCTAAGA
66 CATACGGAGTTCATTCCCAGTCTAAGA
13610329 GTTTGAGCCA
Statistics
Matches: 381, Mismatches: 52, Indels: 28
0.83 0.11 0.06
Matches are distributed among these distances:
342 3 0.01
343 92 0.24
344 1 0.00
349 6 0.02
351 1 0.00
354 2 0.01
355 126 0.33
358 2 0.01
360 1 0.00
366 1 0.00
367 146 0.38
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (343 bp):
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAACGATAGCGGTAGCAGGATCGACAG
CACGCAGGGGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCAGATCGACTGAGCGCCC
GCACGCCTATTTCATGGGTTGGCTAAGGCATACGGAGTTAATTCCATGTCTAAGCCCCAGCCAGA
CTGAGGGTTATGGCAGCGAGATCGGCAGCACGTAGAGGGGAACCGGGCCAATCCCCAGCTTGCGC
ATTATGCCTCTCCGGCCA
Found at i:13611362 original size:159 final size:158
Alignment explanation
Indices: 13610990--13611531 Score: 427
Period size: 158 Copynumber: 3.4 Consensus size: 158
13610980 TTTTGTGAGG
* * * * ** * * *
13610990 TGACTTAAGCATACAGAGTTCATTCCCA-ATCTAAAATCAGACCAGACCGAGGGTTGCAGCAGTA
1 TGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATTGGACTAGACTGAGGGTTGCAGCAGCA
* ** * * * * *
13611054 GGATCGACATCACGTAGGGGGGACC-AGGTCGATCCTCGACTTACGCATTCTACCTCTTCGACCG
65 GGATCGACAGCACACAGGGGGGACCGA-GCCGATCATCGACTTACGCATTATGCCTCTCCGACCG
* ** * * *
13611118 AC-CGAGTGCCCGCACAC-CTGTTTCGTGGGT
129 GCTC-AGCACCCGCACGCTC-ATTTCATGGGT
* * * **** ** * **
13611148 TGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAG-CCCCAGCCGGA-TCGACGGTTGTGGCAGC
1 TGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATTGGA-CTAGACT-GAGGGTTGCAGCAGC
*
13611211 GGGA-CTGACAGCACACAGAGGGGGACC-AGGCCGATCATCGACTTACGCATTATGCCTCTCCGA
64 AGGATC-GACAGCACACAG-GGGGGACCGA-GCCGATCATCGACTTACGCATTATGCCTCTCCGA
13611274 CCGGCTCAGCACCCGCACGCTCATTTCATGGGT
126 CCGGCTCAGCACCCGCACGCTCATTTCATGGGT
*
13611307 TGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATTGGACTAGACTGAGGGTTGCAGTAGCA
1 TGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATTGGACTAGACTGAGGGTTGCAGCAGCA
* ** * * * * **
13611371 GGATCGATAGCATGCAGGGGGGACCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTTCGGTCGG
65 GGATCGACAGCACACAGGGGGGACCGAGCCGATCATCGACTTACGCATTATGCCTCTCCGACCGG
* * *
13611436 CTGAGTACCCGCACGCTCATTTCGTGGGT
130 CTCAGCACCCGCACGCTCATTTCATGGGT
* * ** ** *
13611465 TGGCTTAGGCTTACGGAGTTCATTCCATGTCTAAGATAAGACCGGATTGAGGGTTGCAGCAGCAG
1 TGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATTGGACTAGACTGAGGGTTGCAGCAGCAG
13611530 GA
66 GA
13611532 CCAGCCGCAG
Statistics
Matches: 306, Mismatches: 65, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
157 9 0.03
158 172 0.56
159 117 0.38
160 8 0.03
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
TGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATTGGACTAGACTGAGGGTTGCAGCAGCAG
GATCGACAGCACACAGGGGGGACCGAGCCGATCATCGACTTACGCATTATGCCTCTCCGACCGGC
TCAGCACCCGCACGCTCATTTCATGGGT
Found at i:13611450 original size:158 final size:164
Alignment explanation
Indices: 13611220--13611669 Score: 463
Period size: 158 Copynumber: 2.7 Consensus size: 164
13611210 CGGGACTGAC
* * * * * *
13611220 AGCACACAGAGGGGGACC-AGGCCGATCATCGACTTACGCATTATGCCTC-TCCGACCGGCTCAG
1 AGCACGCAG-GGGGGACCGA-GCCGATCCTCGGCTTACGCATTCTGCCTCTTCGGA-CGGCTGAG
* **
13611283 CACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATTGG
63 CACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGATAAG
* * *
13611347 ACTAGACTGAGGGTTGCAGTAGCAGG-A-TC-G-A-T
128 ACCAGACTGAGGGTTGCAGCAGCAGGCACGCAGAAGT
* * *
13611379 AGCATGCAGGGGGGACCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTTCGGTCGGCTGAGTAC
1 AGCACGCAGGGGGGACCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTTCGGACGGCTGAGCAC
* *
13611444 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCTTACGGAGTTCATT-CCATGTCTAAGATAAGACC
66 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGATAAGACC
* *
13611508 GGATTGAGGGTTGCAGCAGCAGGACCAGCCGCAGGATCAGT
131 AGACTGAGGGTTGCAGCAGCAGG--CA--CGCA-GA--AGT
* * * * *
13611549 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTTTTC-GACAGGCTGAGCA
1 AGCACGCAGGGGGGACCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTTCGGAC-GGCTGAGCA
* * * * *
13611613 CCCGAACGCTCGTTTCAAGGGTTGGTTTAGGCATACGGAGTTCATT-CTATGTCTAAG
65 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAG
13611670 CCCCAGCCGA
Statistics
Matches: 241, Mismatches: 34, Indels: 21
0.81 0.11 0.07
Matches are distributed among these distances:
157 3 0.01
158 117 0.49
159 11 0.05
161 1 0.00
164 1 0.00
166 1 0.00
169 3 0.01
170 104 0.43
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (164 bp):
AGCACGCAGGGGGGACCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTTCGGACGGCTGAGCAC
CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGATAAGACC
AGACTGAGGGTTGCAGCAGCAGGCACGCAGAAGT
Found at i:13611699 original size:170 final size:170
Alignment explanation
Indices: 13611368--13611703 Score: 408
Period size: 170 Copynumber: 2.0 Consensus size: 170
13611358 GGTTGCAGTA
* * * *
13611368 GCAGGATCGATAGCATGCAGGGGGGACCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTTCGGT
1 GCAGGATCGATAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTTCGGA
* * ** *
13611433 CGGCTGAGTACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCTTACGGAGTTCATTCCATGTCTA
66 CGGCTGAGCACCCGAACGCTCATTTCAAGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * ** *
13611498 AGATAAGACCGGATTGAGGGTTGCAGCAGCAGGACCAGCC
131 AGACAAGACCGAACCGAAGGTTGCAGCAGCAGGACCAGCC
* * *
13611538 GCAGGATC-AGTAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTTTTC-G
1 GCAGGATCGA-TAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTTCGG
* * *
13611601 ACAGGCTGAGCACCCGAACGCTCGTTTCAAGGGTTGGTTTAGGCATACGGAGTTCATTCTATGTC
65 AC-GGCTGAGCACCCGAACGCTCATTTCAAGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* * **
13611666 TAAGCCCCAG-CCGAACCGAAGGTTGTGGCAGCAGGACC
129 TAAG-ACAAGACCGAACCGAAGGTTGCAGCAGCAGGACC
13611704 GGTAGCAAGA
Statistics
Matches: 139, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
169 3 0.02
170 134 0.96
171 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (170 bp):
GCAGGATCGATAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTTCGGA
CGGCTGAGCACCCGAACGCTCATTTCAAGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
AGACAAGACCGAACCGAAGGTTGCAGCAGCAGGACCAGCC
Found at i:13612141 original size:159 final size:159
Alignment explanation
Indices: 13611968--13612342 Score: 387
Period size: 158 Copynumber: 2.4 Consensus size: 159
13611958 CGGTTGAGTG
* * * *
13611968 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-C
1 CCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGAC
* * * * * * *
13612032 CGGATAGAGGGTTGTGGCAGCGGGA-CAGGCAGCACGCAGAGGGGGATCGAGTCGATCCCTGACT
66 CGGACAGAGGGTTGTGGCAGCAGCATC-GACAGCACGCAG-GGGGGACCGAATCGATCCCCGACT
* * * * *
13612096 TGCGCATTATGCCTTTCCCACTGGCTCAGCA
129 TCCGCAATATGCCTCTCCCACCGACTCAGCA
* * * * * * *
13612127 CCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCAAGTCTAAG-ATTGGAC
1 CCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGAC
* * * * *
13612191 TGGACCGAGGGTTGTGGCAGCAGCATCGACAGCACGTAGGGGGGACCGAATCGGTCCCCGGCTTC
66 CGGACAGAGGGTTGTGGCAGCAGCATCGACAGCACGCAGGGGGGACCGAATCGATCCCCGACTTC
* * * *
13612256 CGCAATCTGCCTCTCCGACCGACTGAGCG
131 CGCAATATGCCTCTCCCACCGACTCAGCA
* * * *
13612285 CCTGCACGCTCGTTTCATGGTTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 CCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13612343 GTCCAGAGTT
Statistics
Matches: 172, Mismatches: 41, Indels: 6
0.79 0.19 0.03
Matches are distributed among these distances:
158 91 0.53
159 80 0.47
160 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
CCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGAC
CGGACAGAGGGTTGTGGCAGCAGCATCGACAGCACGCAGGGGGGACCGAATCGATCCCCGACTTC
CGCAATATGCCTCTCCCACCGACTCAGCA
Found at i:13613414 original size:159 final size:158
Alignment explanation
Indices: 13613060--13613433 Score: 396
Period size: 159 Copynumber: 2.4 Consensus size: 158
13613050 TAGCACATGG
* * * * *
13613060 AGTTCATTCCTAGTCTAAGATTGGACCGAACTGAGGGTTACGACAGCAGGATCGGCAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCGACAGCAGGACCGACAGCACGCAG
* * * *
13613125 GGGGGACTGGACCGATCCCCGGCTTCCACATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACGCC
66 GGGGGACTGGACCGATCCCCGACTTACACATTATGCCTCTCCGACCGGCTCAGTGCCCGCACGCC
* * *
13613190 CGTTTCGTGGGTTGGCTTAGGCATAGGG
131 CATTTCGTGGGTTGACTTAGGCATAGGA
* ** * * * *
13613218 AGTTCATT-CCATGTCTAA-ACCACAACCAGATC-GAGGGTTGTGGCAGCGGGACCGACAGCACG
1 AGTTCATTCCCA-GTCTAAGATC-GGACC-GAACTGAGGGTTGCGACAGCAGGACCGACAGCACG
* * * * *
13613280 TAGAGGGGG-CTCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGGCTGGCTCAGTGCCCGC
63 CAG-GGGGGACT-GGACCGATCCCCGACTTACACATTATGCCTCTCCGACCGGCTCAGTGCCCGC
* ** *
13613344 ATGCTTATTTCGTGGGTTGACTTAGGCATATGA
126 ACGCCCATTTCGTGGGTTGACTTAGGCATAGGA
* * *
13613377 AGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCAATAGCAGGATCGACA
1 AGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCGACAGCAGGACCGACA
13613434 ACACAAAGGG
Statistics
Matches: 170, Mismatches: 38, Indels: 15
0.76 0.17 0.07
Matches are distributed among these distances:
157 3 0.02
158 48 0.28
159 114 0.67
160 5 0.03
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCGACAGCAGGACCGACAGCACGCAG
GGGGGACTGGACCGATCCCCGACTTACACATTATGCCTCTCCGACCGGCTCAGTGCCCGCACGCC
CATTTCGTGGGTTGACTTAGGCATAGGA
Found at i:13613578 original size:26 final size:26
Alignment explanation
Indices: 13613528--13613580 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13613518 GTTGGCTTAG
* *
13613528 GCATACGGTGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13613554 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13613580 G
1 G
13613581 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13613946 original size:26 final size:26
Alignment explanation
Indices: 13613896--13613948 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13613886 GTTGACTTAG
* *
13613896 GCATACGGAGTTCATCTCCAGTCTAA
1 GCATACGAAGTTCATCTCCAATCTAA
13613922 GCATACGAAGTTCAT-TCCCAATCTAA
1 GCATACGAAGTTCATCT-CCAATCTAA
13613948 G
1 G
13613949 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCTCCAATCTAA
Found at i:13614115 original size:159 final size:162
Alignment explanation
Indices: 13613643--13614122 Score: 379
Period size: 159 Copynumber: 2.9 Consensus size: 162
13613633 ACGCAAGGGG
* * **
13613643 GGACCGGGCCAATCCCTGGCTTGTGCATTCTGCCTCTCCGATTGGTCGAGCACCCGTACGCTCAT
1 GGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGTCGAGCACCCGTACGCTCAT
* * * *
13613708 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAACCCCTAGCTGGACCGATGGTTG
66 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCTGGACC-AAGGTTG
** *
13613773 TGGCAGTAGGACTAGCAGCGGGATCGACAGCACGCAAA
130 TGGCAACAGGACT-GGAGCGGGATCGA-A-CACG--AA
* * * ** * * * * * *
13613811 GGGGGACCGGGCTGATCCTCAGCTTACGCGTTATGCCTCTCCGGCCGGTTGAGAACCCGCACGCT
1 ---GGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGTCGAGCACCCGTACGCT
* *
13613876 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCA-GTCTAAG--C-A--T--ACGAA-G
63 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCCCTAGCTGGACCAAGG
* ** * * **** *
13613932 TTCATTCCCAATCTAAGA-TCGGA-CTGGATCGAGGGTTGAT
127 TT--GTGGCAA-C-AGGACT-GGAGCGGGATCGA-ACACGAA
* *
13613972 CGAGCCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGACCGGTCGAGCACCCGTACGCTCA
1 GGA-CCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGTCGAGCACCCGTACGCTCA
*
13614037 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGCCCTAGCTGGACCAAGGGTT
65 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCTGGACCAA-GGTT
13614102 GTGGCAACAGGACTGGCAGCG
129 GTGGCAACAGGACTGG-AGCG
13614123 AGATTGGTAG
Statistics
Matches: 233, Mismatches: 57, Indels: 43
0.70 0.17 0.13
Matches are distributed among these distances:
158 6 0.03
159 87 0.37
161 2 0.01
162 4 0.02
163 2 0.01
164 19 0.08
165 6 0.03
166 13 0.06
168 4 0.02
169 1 0.00
171 86 0.37
172 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (162 bp):
GGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGTCGAGCACCCGTACGCTCAT
TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCTGGACCAAGGTTGT
GGCAACAGGACTGGAGCGGGATCGAACACGAA
Found at i:13614252 original size:330 final size:330
Alignment explanation
Indices: 13613646--13614280 Score: 900
Period size: 330 Copynumber: 1.9 Consensus size: 330
13613636 CAAGGGGGGA
* **
13613646 CCGGGCCAATCCCTGGCTTGTGCATTCTGCCTCTCCGATTGGTCGAGCACCCGTACGCTCATTTC
1 CCGGGCCAATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGTCGAGCACCCGTACGCTCATTTC
* * * *
13613711 ATGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAACCCCTAGCTGGACCGATGGTTGTGG
66 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAACCCCTAGCTGGACCAAGGGTTGTGG
** * ** * *
13613776 CAGTAGGACTAGCAGCGGGATCGACAGCACGCAAAGGGGGACCGGGCTGATCCTCAGCTTACGCG
131 CAACAGGACTAGCAGCGAGATCGACAGCACGCAAAAAGGGACCGGGCCGATCCTCAGCTTACACG
* * *
13613841 TTATGCCTCTCCGGCCGGTTGAGAACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
196 TTATGCCTCTCCGGCCGGCTGAGAACCCGCACGCTCATTTCGTGGGTTGACATAGGCATACCGAG
13613906 TTCATCTCCAGTCTAAGCATAC-GAAGTTCATTCCCAATCTAAGATCGGACTGGATCGAGGGTTG
261 TTCATCTCCAGTCTAAGCATACAG-AGTTCATTCCCAATCTAAGATCGGACTGGATCGAGGGTTG
13613970 ATCGAG
325 ATCGAG
* *
13613976 CCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGACCGGTCGAGCACCCGTACGCTCATTTC
1 CCGGGCCAATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGTCGAGCACCCGTACGCTCATTTC
* *
13614041 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGCCCTAGCTGGACCAAGGGTTGTGG
66 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAACCCCTAGCTGGACCAAGGGTTGTGG
* * ** * * * *
13614106 CAACAGGACTGGCAGCGAGATTGGTAGCATGCAAAAAGGGATCGGGCCGATCC-CTGACTTGCAC
131 CAACAGGACTAGCAGCGAGATCGACAGCACGCAAAAAGGGACCGGGCCGATCCTCAG-CTTACAC
** * * *
13614170 GTTATGCCTCTCCGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTT-ACCATAGGCATGCCG
195 GTTATGCCTCTCCGGCCGGCTGAGAACCCGCACGCTCATTTCGTGGGTTGA-CATAGGCATACCG
13614234 AGTTCAT-TCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGAT
259 AGTTCATCTCCA-GTCTAAGCATACAGAGTTCATTCCCAATCTAAGAT
13614281 TTTGAGCCAC
Statistics
Matches: 267, Mismatches: 34, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
329 7 0.03
330 259 0.97
331 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.25
Consensus pattern (330 bp):
CCGGGCCAATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGTCGAGCACCCGTACGCTCATTTC
ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAACCCCTAGCTGGACCAAGGGTTGTGG
CAACAGGACTAGCAGCGAGATCGACAGCACGCAAAAAGGGACCGGGCCGATCCTCAGCTTACACG
TTATGCCTCTCCGGCCGGCTGAGAACCCGCACGCTCATTTCGTGGGTTGACATAGGCATACCGAG
TTCATCTCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACTGGATCGAGGGTTGA
TCGAG
Found at i:13614985 original size:26 final size:26
Alignment explanation
Indices: 13614949--13615001 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13614939 GTTGACTTTG
13614949 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13614975 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13615001 G
1 G
13615002 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13615285 original size:159 final size:159
Alignment explanation
Indices: 13615070--13615634 Score: 508
Period size: 159 Copynumber: 3.6 Consensus size: 159
13615060 CGATCCATGG
* * * * *
13615070 CTTGCGCATTCTGCCTCTCCAGCCGGCTGAACGCCCGCACGC-CTGCTTT-GTTGGTTGGCTTAG
1 CTTGCGCATTATGCCTCTCC-GGCGGCTCAGCGCCCGCACGCTC-G-TTTCGTGGGTTGGCTTAG
* *
13615133 GCATAGGGAGTTCATT-CCATGTCTAAGCCTC-AGCCGGACCAAGGGTTGTGGCAACGGGTCCGG
63 GCATAAGGAGTTCATTCCCA-GTCTAAGCCTCTAGCCGGACCAAGGGTTATGGCAACGGGTCCGG
*
13615196 CAGCACGTAGAGGGGGATCGGGCTGATCCTCGA
127 CAGCACGTAGAGGGGGATCGGGCCGATCCTCGA
* * * *
13615229 CTTGCTCATTATGCCTCTCCGGTCGGCTCAGGGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
1 CTTGCGCATTATGCCTCTCCGG-CGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * * * *** * * * * * *
13615294 GTACGGAGTTCATTCCCAGTCTAAG-TTCTAACCGGATTGAGGATTACGACAGCAGGAT-CGACA
65 ATAAGGAGTTCATTCCCAGTCTAAGCCTCTAGCCGGACCAAGGGTTATGGCAAC-GGGTCCGGCA
* *
13615357 G--CGTACAGGGGGGATCGGGCCGATCTTCGA
129 GCACGTAGA-GGGGGATCGGGCCGATCCTCGA
* * * * * * * * * *
13615387 CTTACGCATTCTGCCTCTTCGGCCGGTTGAGCACCCGCATGCCCATTTTGTGGGTTGGCTTAGGC
1 CTTGCGCATTATGCCTCTCCGG-CGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * * * *
13615452 ATAAGGAGTTCATT-CTATGTCTAAGCC-CTAGCCAGACCATGGGTTATGGCAACAGGACCGGCA
65 ATAAGGAGTTCATTCCCA-GTCTAAGCCTCTAGCCGGACCAAGGGTTATGGCAACGGGTCCGGCA
* * * *
13615515 GCACGCAGAGGGCGATCGGGCCAATCC-CTAA
129 GCACGTAGAGGGGGATCGGGCCGATCCTC-GA
13615546 CTTGCGCATTATGCCTCTCCGGCTGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGAG-TTA-G
1 CTTGCGCATTATGCCTCTCCGGC-GGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTG-GCTTAGG
*
13615609 CATATGGAGTTCATTCCCAGTCTAAG
64 CATAAGGAGTTCATTCCCAGTCTAAG
13615635 ATCAGACCAG
Statistics
Matches: 313, Mismatches: 77, Indels: 33
0.74 0.18 0.08
Matches are distributed among these distances:
157 8 0.03
158 140 0.45
159 153 0.49
160 12 0.04
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
CTTGCGCATTATGCCTCTCCGGCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
TAAGGAGTTCATTCCCAGTCTAAGCCTCTAGCCGGACCAAGGGTTATGGCAACGGGTCCGGCAGC
ACGTAGAGGGGGATCGGGCCGATCCTCGA
Found at i:13615558 original size:317 final size:316
Alignment explanation
Indices: 13614974--13615637 Score: 870
Period size: 317 Copynumber: 2.1 Consensus size: 316
13614964 CCCCAGTCTA
*
13614974 AGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAAGGTTACGACAGCAGGATCGAC
1 AGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAAGGTTACGACAGCAGGATCGAC
* * * * *
13615039 AGCACGCAGGGAGGACCGGGTCGATCCATGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAACGC
66 AGCACACAGGGAGGACCGGGCCGATCCATGACTTACGCATTCTGCCTCTCCAGCCGGCTGAACAC
** * * *
13615104 CCGCACGCCTGCTTTGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAGCCG
131 CCGCACGCCCACTTTGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCTCAGCCA
* * * * * ** *
13615169 GACCAAGGGTTGTGGCAACGGGTCCGGCAGCACGTAGAGGGGGATCGGGCTGATCCTCGACTTGC
196 GACCAAGGGTTATGGCAACAGGACCGGCAGCACGCAGAGGGCGATCGGGCCAATCCTCAACTTGC
* *
13615234 TCATTATGCCTCTCCGG-TCGGCTCAGGGCCCGCACGCTCGTTTCATGGGTTGACTT
261 GCATTATGCCTCTCCGGCT-GGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
* * * *
13615290 AGGCGTACGGAGTTCATTCCCAGTCTAAGTTCTAACCGGATTG-AGGATTACGACAGCAGGATCG
1 A-GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAAGG-TTACGACAGCAGGATCG
** * * * * * * *
13615354 ACAGCGTACAGGGGGGATCGGGCCGAT-CTTCGACTTACGCATTCTGCCTCTTCGGCCGGTTGAG
64 ACAGCACACAGGGAGGACCGGGCCGATCCAT-GACTTACGCATTCTGCCTCTCCAGCCGGCTGAA
* * *
13615418 CACCCGCATGCCCATTTTGTGGGTTGGCTTAGGCATAAGGAGTTCATTCTATGTCTAAGCC-CTA
128 CACCCGCACGCCCACTTTGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCTC-A
*
13615482 GCCAGACCATGGGTTATGGCAACAGGACCGGCAGCACGCAGAGGGCGATCGGGCCAATCC-CTAA
192 GCCAGACCAAGGGTTATGGCAACAGGACCGGCAGCACGCAGAGGGCGATCGGGCCAATCCTC-AA
* *
13615546 CTTGCGCATTATGCCTCTCCGGCTGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGAGTT
256 CTTGCGCATTATGCCTCTCCGGCTGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
*
13615607 AGCATATGGAGTTCATTCCCAGTCTAAGATC
1 AGCATACGGAGTTCATTCCCAGTCTAAGATC
13615638 AGACCAGACA
Statistics
Matches: 299, Mismatches: 43, Indels: 12
0.84 0.12 0.03
Matches are distributed among these distances:
316 35 0.12
317 263 0.88
318 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (316 bp):
AGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAAGGTTACGACAGCAGGATCGAC
AGCACACAGGGAGGACCGGGCCGATCCATGACTTACGCATTCTGCCTCTCCAGCCGGCTGAACAC
CCGCACGCCCACTTTGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCTCAGCCA
GACCAAGGGTTATGGCAACAGGACCGGCAGCACGCAGAGGGCGATCGGGCCAATCCTCAACTTGC
GCATTATGCCTCTCCGGCTGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
Found at i:13615654 original size:158 final size:159
Alignment explanation
Indices: 13614975--13615792 Score: 565
Period size: 158 Copynumber: 5.1 Consensus size: 159
13614965 CCCAGTCTAA
* * * * * *
13614975 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGATC-GAAGGTTACGACAGCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCAGAGGGTTATGACAACAGGACCGA
* * * * * * * *
13615038 CAGCACGCAGGGAGGACCGGGTCGATCCAT-GGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAAC
65 CAGCACGCAGGGGGGATCGGGCCGATCC-TCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAGC
*
13615102 GCCCGCACGC-CTGCTTT-GTTGGTTGGCTTAG
129 GCCCGCACGCTC-G-TTTCGTGGGTTGGCTTAG
* * * * * *
13615133 GCATAGGGAGTTCATT-CCATGTCTAAGCCTCAG-CCGGACCA-AGGGTTGTGGCAACGGGTCCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCAGAGGGTTATGACAACAGGACCG
* * * * *
13615195 GCAGCACGTAGAGGGGGATCGGGCTGATCCTCGACTTGCTCATTATGCCTCTCCGGTCGGCTCAG
64 ACAGCACGCAG-GGGGGATCGGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAG
* * *
13615260 GGCCCGCACGCTCGTTTCATGGGTTGACTTAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
13615292 GCGTACGGAGTTCATTCCCAGTCTAAGTTCTA-ACCGGA-TTGAGGATTACGACAGCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGACCAGAGGGTTATGACAACAGGACCGA
*** * * * * * * *
13615355 CAGCGTACAGGGGGGATCGGGCCGATCTTCGACTTACGCATTCTGCCTCTTCGGCCGGTTGAGCA
65 CAGCACGCAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAGCG
* * * *
13615420 CCCGCATGCCCATTTTGTGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * *
13615450 GCATAAGGAGTTCATT-CTATGTCTAAGCCCTAG-CCAGACCA-TGGGTTATGGCAACAGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCAGAGGGTTATGACAACAGGACCG
* * * * *
13615512 GCAGCACGCAGAGGGCGATCGGGCCAATCC-CTAACTTGCGCATTATGCCTCTCCGGCTGGCTCA
64 ACAGCACGCAG-GGGGGATCGGGCCGATCCTC-GACTTGCGCATTATGCCTCTCCGGCCGGCTCA
13615576 GCGCCCGCACGCTCGTTTCGTGGGTTGAG-TTA-
127 GCGCCCGCACGCTCGTTTCGTGGGTTG-GCTTAG
* *
13615608 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CAGAGGGTTATGATAGCAGGACCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAGAGGGTTATG--A-C---A--A-C
* * * **** * * * *
13615672 AGTAGGATCGACGGCATGCAGGGGGGATCAATACGATACC-CGGCTTGTGCATTTTGCCTCTCCA
57 ---AGGACCGACAGCACGCAGGGGGGATCGGGCCGAT-CCTCGACTTGCGCATTATGCCTCTCCG
* * *
13615736 GCCGGCTGAGCTCCCGCACGCTTGTTTCGTGGGTTGGCTTAG
118 GCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
13615778 GCATACGGAGTTCAT
1 GCATACGGAGTTCAT
13615793 ACCATGTCTA
Statistics
Matches: 501, Mismatches: 123, Indels: 60
0.73 0.18 0.09
Matches are distributed among these distances:
157 9 0.02
158 210 0.42
159 177 0.35
160 6 0.01
161 1 0.00
164 1 0.00
166 1 0.00
167 1 0.00
168 1 0.00
169 63 0.13
170 31 0.06
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAGAGGGTTATGACAACAGGACCGAC
AGCACGCAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13616012 original size:26 final size:26
Alignment explanation
Indices: 13615963--13616013 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
13615953 TGACTTAGGG
* * *
13615963 ATACGGAGTTCATCCCCAGCCTAAGC
1 ATACGAAGTTCATACCCAACCTAAGC
*
13615989 ATACGAAGTTCATACCCAATCTAAG
1 ATACGAAGTTCATACCCAACCTAAG
13616014 ATCGAACCGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (26 bp):
ATACGAAGTTCATACCCAACCTAAGC
Found at i:13616492 original size:26 final size:26
Alignment explanation
Indices: 13616462--13616513 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13616452 GTTGGCTTAG
13616462 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13616488 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13616514 CATTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13617156 original size:159 final size:158
Alignment explanation
Indices: 13616803--13617181 Score: 388
Period size: 159 Copynumber: 2.4 Consensus size: 158
13616793 TCTGAAATGA
* * *
13616803 GGACCGCACCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGGGGGGACCGGGCCAATCCCCGA
1 GGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCAATCCCCAA
* * * * ** *
13616868 CTTGCATATTCTACCTCTCCGGCCGACTGAGCACCCGTGCGCCCGTTTCGTGGGTTGGCTTAGGC
66 CTTGCACATTATACCTCTCCGGCCGACTCAACACCCGCACGCCCGTTTCGTGGGTTGACTTAGGC
* *
13616933 ATAGGGAGTTCATTCCATGTCTAAGCCC
131 ATACGGAGTTCATTCCATGTCTAAGACC
** * * * * *
13616961 CAACCAGACCAAGGGTTGTGGCAGC-GTGACCGACAGCACGCAGAGGGGGA-CGTGGCCGATCCC
1 GGACCGGACCGAGGGTTGCGGCAGCAG-GATCGACAGCACGCAG-GGGGGACCG-GGCCAATCCC
* * * * * *
13617024 CAACTTGCGCATTATGCCTCTCCGGTCTG-CTCAACGCTCGCACGCTCGTTTCGTGGGTTGACTT
63 CAACTTGCACATTATACCTCTCCGG-CCGACTCAACACCCGCACGCCCGTTTCGTGGGTTGACTT
*
13617088 AGGCATACGGAGTTCATTCCCA-GTCTAAGATC
127 AGGCATACGGAGTTCATT-CCATGTCTAAGACC
* * * * * *
13617120 GGACCGGACCGAGGGTTGCAGCAGCAGGATCAACAGCACACGGGAGGGGACTGGGCCGATCC
1 GGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGG-GGGGACCGGGCCAATCC
13617182 TTGACTTGCG
Statistics
Matches: 176, Mismatches: 37, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
157 1 0.01
158 36 0.20
159 132 0.75
160 7 0.04
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.18
Consensus pattern (158 bp):
GGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCAATCCCCAA
CTTGCACATTATACCTCTCCGGCCGACTCAACACCCGCACGCCCGTTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATTCCATGTCTAAGACC
Found at i:13618119 original size:26 final size:26
Alignment explanation
Indices: 13618090--13618142 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
13618080 GTTGGCTTAG
*
13618090 GCATACAGAGTTC-TTTCCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
13618116 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13618142 G
1 G
13618143 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13618452 original size:842 final size:842
Alignment explanation
Indices: 13616917--13618475 Score: 2048
Period size: 842 Copynumber: 1.9 Consensus size: 842
13616907 CGCCCGTTTC
*
13616917 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCAAGGGTTGTGG
1 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAGGTCTAAGCCCCAACCAGACCAAGGGTTGTGG
* * * * *
13616982 CAGCGTGACCGACAGCACGCAGAGGGGGACGTGGCCGATCCCCAACTTGCGCATTATGCCTCTCC
66 CAGCGGGACCAACAACACGCAGAGAGGGACGTAGCCGATCCCCAACTTGCGCATTATGCCTCTCC
* * ** *
13617047 GGTCTGCTCAACGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
131 GGTCGGCTCAACGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAAAATTCATTCCCAGT
* * *
13617112 CTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCAACAGCACACGGGAGGGGACTGGGCC
196 CTAAGATCGGACCGGACCGACGGTTGCAGCAGCAAGATCAACAGCACACAGGAGGGGACTGGGCC
** * * *
13617177 GATCCTTGACTTGCGCCTTCTGCCTCTTCGACCGGTTGAGTGCCCACACCCTCGTTTCGTGGGTT
261 GATCCCAGACTTGCACATTCTGCCTCTTCGACCGGTTGAGCGCCCACACCCTCGTTTCGTGGGTT
* *
13617242 GGCTTAGGCATATGAAGTTTATTACATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
326 GGCTTAGGCATAAGAAGTTTATTACATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * *
13617307 ACCGGACCAAGGGTTGCGACAGCAAGACCAGCAGTAGGATCGGCAACATGCAGGGGGGACCGGCC
391 ACCGGACCAAGGGTTGCGACAACAAGACCAACAGCAGGATCGGCAACACGCAGGGGGGACCGGCC
* *
13617372 CAGTCCCCGGCTTGCGCATTCTACCTCTCTGGTCGGTTGAGCACCCGCACGCTCATTTCATGGGT
456 CAGTCCCCGGCTTGCGCATTCTACCTCTCTGATCGGTTGAGCACCCGCACACTCATTTCATGGGT
* * * * *
13617437 TGACTTAGGCATACGGAGTTCTTTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTATGGTAGCAG
521 TGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTATAGCAGCAG
*
13617502 GACCAGCAGCAGGATCGACAACACGTAGAGAGGGACCGGGCTGATCCTCGGCTTATGCATTATGA
586 GACCAGCAGCAGGATCGACAACACGTAGAGAGGGACCGAGCTGATCCTCGGCTTATGCATTATGA
13617567 CTCTCCGGCCAGCTGAACGCCCGCACACTCATTTCGAGGGTTGACTTAGGCATACGGAGTTCATC
651 CTCTCCGGCCAGCTGAACGCCCGCACACTCATTTCGAGGGTTGACTTAGGCATACGGAGTTCATC
13617632 CCCACTCTAAGATCAGATCGACTGAGGGTTACGACAGTAGGATCGATAGCACGCAGAAGGGACCA
716 CCCACTCTAAGATCAGATCGACTGAGGGTTACGACAGTAGGATCGATAGCACGCAGAAGGGACCA
13617697 GGCCGATCCTTGGCTTGTGTATTTTGCCTCTCCGACTGACTGAACGCTCGCATGCTCATTTT
781 GGCCGATCCTTGGCTTGTGTATTTTGCCTCTCCGACTGACTGAACGCTCGCATGCTCATTTT
* ** * *
13617759 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAGGTCTAAGCCCCAGCTGGATCGAGGGTTGTGG
1 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAGGTCTAAGCCCCAACCAGACCAAGGGTTGTGG
* * * *
13617824 CAGCGGGACCAACAACACGTAGAGAGGGATCG-AGTCGATCCCCGACTTGCGCATTATGCCTCTT
66 CAGCGGGACCAACAACACGCAGAGAGGGA-CGTAGCCGATCCCCAACTTGCGCATTATGCCTCTC
* * *
13617888 CGGTCGGTTCAGAAC-C-CGCACGCTCATTTCGTGGGTTTACTTATGCATACAAAATTCATTCCC
130 CGGTCGGCTC--AACGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAAAATTCATTCCC
* * * * *
13617951 AGTCTAAGATCGGACCGGACCGACGGTTGCGGTAGCAAGATCCACAGCACGCAGG-GGTGACTGG
193 AGTCTAAGATCGGACCGGACCGACGGTTGCAGCAGCAAGATCAACAGCACACAGGAGGGGACTGG
* * ** ** **
13618015 GTCGATCCCCAG-CTTGTACATTCTGCCTC-TCTGGTCGGTTGAGCGCCTGCATGCTCGTTTCGT
258 GCCGAT-CCCAGACTTGCACATTCTGCCTCTTC-GACCGGTTGAGCGCCCACACCCTCGTTTCGT
* *
13618078 GGGTTGGCTTAGGCATACAG-AGTTCT-TTCCATGTCTAAGCATAGGGAGTTCATTCCCAGTCTA
321 GGGTTGGCTTAGGCATA-AGAAGTT-TATTACATGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* *
13618141 AGATCAGACCGGATCC-AGGGTTGC-AGCAACAGGACCAACAGCAGGATCGGCAGCACGCAGGAG
384 AGATCAGACCGGA-CCAAGGGTTGCGA-CAACAAGACCAACAGCAGGATCGGCAACACGCAGG-G
* * * *
13618204 GGGACTGGGCC-GATCCCCGGCTTGCGCATTCTGCCTCT-TCGATCGGTTGAGCGCCCGCACACT
446 GGGACCGGCCCAG-TCCCCGGCTTGCGCATTCTACCTCTCT-GATCGGTTGAGCACCCGCACACT
* * * * * *
13618267 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTATGCCCTAGCCGAATCGAGGG
509 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGG
* * * * ** * * * *
13618332 TTGTAGCAGCAGGACCGGTAGCTGGATCGGTAGCATGTAGAGGGGGACCGAGCTGATCCTCTG-T
574 TTATAGCAGCAGGACCAGCAGCAGGATCGACAACACGTAGAGAGGGACCGAGCTGATCCTCGGCT
* * * * * * * ** ** *
13618396 TTTCGTATTATGCCTCTTCGGTCGGGTGAGTGCCCGCATGCTCGTTTC-ATGGGTTGACTTAGGC
639 TAT-GCATTATGACTCTCCGGCCAGCTGAACGCCCGCACACTCATTTCGA-GGGTTGACTTAGGC
13618460 ATACGGAGTTCATCCC
702 ATACGGAGTTCATCCC
13618476 TGATCTAAGC
Statistics
Matches: 609, Mismatches: 94, Indels: 28
0.83 0.13 0.04
Matches are distributed among these distances:
840 3 0.00
841 162 0.27
842 438 0.72
843 3 0.00
844 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (842 bp):
GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAGGTCTAAGCCCCAACCAGACCAAGGGTTGTGG
CAGCGGGACCAACAACACGCAGAGAGGGACGTAGCCGATCCCCAACTTGCGCATTATGCCTCTCC
GGTCGGCTCAACGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAAAATTCATTCCCAGT
CTAAGATCGGACCGGACCGACGGTTGCAGCAGCAAGATCAACAGCACACAGGAGGGGACTGGGCC
GATCCCAGACTTGCACATTCTGCCTCTTCGACCGGTTGAGCGCCCACACCCTCGTTTCGTGGGTT
GGCTTAGGCATAAGAAGTTTATTACATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCGGACCAAGGGTTGCGACAACAAGACCAACAGCAGGATCGGCAACACGCAGGGGGGACCGGCC
CAGTCCCCGGCTTGCGCATTCTACCTCTCTGATCGGTTGAGCACCCGCACACTCATTTCATGGGT
TGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTATAGCAGCAG
GACCAGCAGCAGGATCGACAACACGTAGAGAGGGACCGAGCTGATCCTCGGCTTATGCATTATGA
CTCTCCGGCCAGCTGAACGCCCGCACACTCATTTCGAGGGTTGACTTAGGCATACGGAGTTCATC
CCCACTCTAAGATCAGATCGACTGAGGGTTACGACAGTAGGATCGATAGCACGCAGAAGGGACCA
GGCCGATCCTTGGCTTGTGTATTTTGCCTCTCCGACTGACTGAACGCTCGCATGCTCATTTT
Found at i:13619713 original size:26 final size:26
Alignment explanation
Indices: 13619677--13619729 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13619667 GTTGACTTAG
13619677 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13619703 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13619729 G
1 G
13619730 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13620150 original size:159 final size:160
Alignment explanation
Indices: 13619753--13620363 Score: 466
Period size: 159 Copynumber: 3.9 Consensus size: 160
13619743 GAGGGTGCAA
* * * * * *
13619753 CAGCAGGATCGACAGCATGCAG-GGGGGACCAGGTCGATCCTCGGCTTGCACATTCTACCTCTTC
1 CAGCGGGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTTC
* * ** ** *
13619817 GGCCCGTTGAGCACCCGTACGCCC-ATTTCGTGGGTTGGAATAGGCATAGGGAGTTCATTTCATG
66 GGCCAGTTGAGCGCCCACACGCCCGATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* * * ** **
13619881 TCTAATCACTAGCCAGAGTGATTGTTGTGG
131 TCTAAGCACCAACCAGACCGAGGGTTGTGG
* *
13619911 CAGCGGGACCGACAGCACGCAGAGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTC-TC
1 CAGCGGGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTTC
* * * *
13619975 TGACCGGTTGAGCGCCCACATGCCCGATTT-GTGGGCTGGCTTAGGCATAGGGAGTTCATTCCAT
66 -GGCCAGTTGAGCGCCCACACGCCCGATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
* **
13620039 GTCTAAGCCCCAACTGGACCGAGGGTTGTGG
130 GTCTAAGCACCAACCAGACCGAGGGTTGTGG
*** * *
13620070 CAGCGGGACCGGTGGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTGCACATTATGCCTCTTC
1 CAGCGGGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTTC
* * * ** * * *
13620135 GGCCAGCTCAACGCCCACACGCTTG-TTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-
66 GGCCAGTTGAGCGCCCACACGCCCGATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCAT
* *** * * *
13620198 GTCTAAG-ATCAGATTGGACTGTGGGTTGGGG
130 GTCTAAGCACCA-ACCAGACCGAGGGTTGTGG
* * * * * * * ** * * ** *
13620229 TAGCAGGATCAACAGCACACAGTGCGGGATTGGGTCGGTCCCCGACTTGTGCATTCTGCCTCTCC
1 CAGCGGGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTTC
** * ** * * * * *
13620294 GATC-GACTGAGCGCCCGTACGCTCG-TTTCGTGGGTTGGCCTATGCATACGAAGTTCATTCCAT
66 GGCCAG-TTGAGCGCCCACACGCCCGATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
13620357 GTCTAAG
130 GTCTAAG
13620364 TATATGAAGT
Statistics
Matches: 364, Mismatches: 80, Indels: 17
0.79 0.17 0.04
Matches are distributed among these distances:
158 30 0.08
159 325 0.89
160 9 0.02
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (160 bp):
CAGCGGGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTTC
GGCCAGTTGAGCGCCCACACGCCCGATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
TCTAAGCACCAACCAGACCGAGGGTTGTGG
Found at i:13621102 original size:26 final size:26
Alignment explanation
Indices: 13621072--13621124 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13621062 ATTGACTTAG
* *
13621072 GCATACGGAGTTCATCCCCGGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13621098 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13621124 G
1 G
13621125 ATCGGATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13621426 original size:159 final size:157
Alignment explanation
Indices: 13621138--13621599 Score: 511
Period size: 159 Copynumber: 2.9 Consensus size: 157
13621128 GGATTGGACA
* * * * * *
13621138 AGGGTTACGGCAGCAAGATCGACAGCACGCAGGGGGGGTCGGGTCGATCCCCGGCCTACGCATTC
1 AGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTC
* * **
13621203 TACCTCTCCGA-TCGACTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGTCATAGGGAGTT
66 TGCCTCTCCGACT-GACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG-CATACAGAGTT
* * **
13621267 CATTACATGTCTAAGCCCCA-ACTGAA-CT
129 CATTCCATGTCTAAG-ACCAGACCAAACCT
* * *
13621295 GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGATCGGGTCGATCCCCAACTTGCGCAT
1 -AGGGTTGCGGCAGCAGGATCGACAGCACGCAG-GGGGGATCGGGTCGATCCCCGACTTGCGCAT
* * * * * * *
13621360 TATGCCTCTTCGACTGGCTCAGCGCCCGCACACTCGTTTCGTGGGTTGACTTATGCATACAGAGT
64 TCTGCCTCTCCGACTGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTA-GCATACAGAGT
*
13621425 TCATTCCCA-GTCTAAGATCAGACCAAACCT
128 TCATT-CCATGTCTAAGACCAGACCAAACCT
* * * * * *
13621455 AGGGTTGCGGCAGCAGGGTCGACAGCACACAGGGGGGGACCGAGCCAATCCCCGACTTGCGCATT
1 AGGGTTGCGGCAGCAGGATCGACAGCACGCA-GGGGGGATCGGGTCGATCCCCGACTTGCGCATT
13621520 CTGCCTCTCCGACCT-ACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTACGCATACAGAGT
65 CTGCCTCTCCGA-CTGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTA-GCATACAGAGT
*
13621584 TCATTCCATGCCTAAG
128 TCATTCCATGTCTAAG
13621600 TATACGGAGT
Statistics
Matches: 252, Mismatches: 43, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
158 33 0.13
159 210 0.83
160 9 0.04
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.21
Consensus pattern (157 bp):
AGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTC
TGCCTCTCCGACTGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGCATACAGAGTTCA
TTCCATGTCTAAGACCAGACCAAACCT
Found at i:13622325 original size:26 final size:26
Alignment explanation
Indices: 13622296--13622348 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13622286 GTTGACTTAG
*
13622296 GCATACGGAGTTC-TTCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
13622322 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13622348 G
1 G
13622349 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13622665 original size:159 final size:159
Alignment explanation
Indices: 13622322--13622666 Score: 401
Period size: 159 Copynumber: 2.2 Consensus size: 159
13622312 TCCAGTCTAA
* * **
13622322 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGAGTTGCGACAGAAGGGTCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGAACCGAGAGTTGCGACAGAAGGATCAACA
* * * * * *
13622387 GCACGTAGAGGGGGATCGGGCTGATCCCCGACTTGCGCATTATGCTTTTCCAGCCGGCTCAACGC
66 GCACGCAGAGGGGGACCAGGCTGATCCCCGACTTGCGCATTATACCTCTCCAGCCGGCTCAACGC
*
13622452 CCGCACGCTCATTTCGTGGGTTAACTTAG
131 CCGCACGCTCATTTCATGGGTTAACTTAG
* * * ** *
13622481 GCATACAGAGTTCATTCCCAATCTAAGATCGGACTAG-ACCGAGGGTTGCGGTAGTAGGATCAAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGAC-AGAACCGAGAGTTGCGACAGAAGGATCAAC
* * * * * *
13622545 AGCACGCAGCGGGGGACCAGGCTGGA-CCCCGGCTTGTGCATTCTACCTCTCC-GACCGGCTGAG
65 AGCACGCAGAGGGGGACCAGGCT-GATCCCCGACTTGCGCATTATACCTCTCCAG-CCGGCTCAA
**
13622608 CGCCCGCACGCTCATTTCATGGGTTGGCTTAG
128 CGCCCGCACGCTCATTTCATGGGTTAACTTAG
13622640 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACAGAGTTCATTCCCA-GTCTAAG
13622667 CATACGGAGT
Statistics
Matches: 156, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
158 4 0.03
159 149 0.96
160 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (159 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGAACCGAGAGTTGCGACAGAAGGATCAACA
GCACGCAGAGGGGGACCAGGCTGATCCCCGACTTGCGCATTATACCTCTCCAGCCGGCTCAACGC
CCGCACGCTCATTTCATGGGTTAACTTAG
Found at i:13622670 original size:26 final size:26
Alignment explanation
Indices: 13622640--13622692 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13622630 GTTGGCTTAG
13622640 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13622666 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13622692 G
1 G
13622693 AGCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13622843 original size:184 final size:185
Alignment explanation
Indices: 13622481--13622849 Score: 515
Period size: 184 Copynumber: 2.0 Consensus size: 185
13622471 GTTAACTTAG
* * *
13622481 GCATACAGAGTTCATTCCCAATCTAAGATCGGACTAGACCGAGGGTTGCGGTAGTAGGATCAACA
1 GCATACAGAGTTCATTCCCAATCTAAGAGCAGACTAGACCGAGGGTTGCGGCAGTAGGATCAACA
* * *
13622546 GCACGCAGCGGGGGACCAGGCTGGACCCCGGCTTGTGCATTCTACCTCTCCGACCGGCTGAGCGC
66 GCACGCAGCGGGGGACCAGGCCGGACCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCAC
*
13622611 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
131 CCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * * * * * *
13622666 GCATACGGAGTTCATTCCCAGTCTAAGAGCAGATTGGATCGAGGGTTGCGGCAGTAGGATCGATA
1 GCATACAGAGTTCATTCCCAATCTAAGAGCAGACTAGACCGAGGGTTGCGGCAGTAGGATCAACA
* * * * * * *
13622731 GCACGCAG-GGGGGACTAGGCCGGTCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGTTGAGCAC
66 GCACGCAGCGGGGGACCAGGCCGGACCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCAC
* * *
13622795 CCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAA
131 CCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
13622850 ACCCCAGCCA
Statistics
Matches: 160, Mismatches: 24, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
184 97 0.61
185 63 0.39
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (185 bp):
GCATACAGAGTTCATTCCCAATCTAAGAGCAGACTAGACCGAGGGTTGCGGCAGTAGGATCAACA
GCACGCAGCGGGGGACCAGGCCGGACCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCAC
CCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:13623365 original size:26 final size:26
Alignment explanation
Indices: 13623313--13623365 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13623303 GTTGGCTTAG
*
13623313 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
*
13623339 GCATATGGAGTTCATTCCCA-GTATAA
1 GCATACGGAGTTCATT-CCATGTATAA
13623365 G
1 G
13623366 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:13623545 original size:26 final size:26
Alignment explanation
Indices: 13623509--13623561 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13623499 GTTGACTTAG
*
13623509 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
13623535 GCATATGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
13623561 G
1 G
13623562 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:13623841 original size:158 final size:158
Alignment explanation
Indices: 13623535--13623877 Score: 411
Period size: 158 Copynumber: 2.2 Consensus size: 158
13623525 CCCAGTCTAA
* * *
13623535 GCATATGGAGTTCATTCCCAGCCTAAGATCAAACCGGATCGAGGGTTACGGTAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAATCGAGGGTTACGGTAGCAAGATCGACA
*
13623600 GCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCTCATTCTACCTCTATGATCGGCTCAGCGCC
66 GCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCTCATTCTACCTCTACGATCGGCTCAGCGCC
* *
13623665 CGCACCCTCATTTTGTGGGTTGACTTAG
131 CACACCCTCATTTCGTGGGTTGACTTAG
** * * * * *
13623693 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAATTGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAATCGAGGGTTACGGTAGCAAGATCGACA
* * * * * * * * *
13623758 GCACGCAGGGGGGATCGGGCCGATCCTTGGCTTGCGT-ATTTTGCCTCTCCGGTTGGCTGAGTGC
66 GCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGC-TCATTCTACCTCTACGATCGGCTCAGCGC
** * *
13623822 CCACACGTTCGTTTCGTGGGTTGGCTTAG
130 CCACACCCTCATTTCGTGGGTTGACTTAG
*
13623851 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
13623878 CATACGAAGT
Statistics
Matches: 156, Mismatches: 27, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
157 3 0.02
158 152 0.97
159 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAATCGAGGGTTACGGTAGCAAGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCTCATTCTACCTCTACGATCGGCTCAGCGCC
CACACCCTCATTTCGTGGGTTGACTTAG
Found at i:13623883 original size:184 final size:184
Alignment explanation
Indices: 13623693--13624257 Score: 521
Period size: 184 Copynumber: 3.0 Consensus size: 184
13623683 GTTGACTTAG
* *
13623693 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAATTGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTTGCGGCAGCAGGATCGATA
* * * * *
13623758 GCACGCAGGGGGGATCGGGCCGATCCTTGGCTTGCGTATTTTGCCTCTCCGGTTGGCTGAGTGCC
66 GCACGCAGGGGGGACCAGGCCGATCCTTGGCTTGCGTATTCTGCCTCTCCAGTTGGCTGAGCGCC
* * *
13623823 CACACGTTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
131 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAA
* * * * * *
13623877 GCATACGAAGTTCATTCTCAGTTTAAGATCGGATCGGACCAAGGGTTGCGGCAGCAGG-TCCAGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTTGCGGCAGCAGGAT-C-G-
* * * * *
13623941 AGTAGGACCGACAGTACGCAGGGGGGACCAAGCCGATCCCTGACTTACGCATTCTGCCTCTCCAG
63 A-T---A--G-C---ACGCAGGGGGGACCAGGCCGATCCTTGGCTTGCGTATTCTGCCTCTCCAG
* * * * ** *
13624006 TCGGTTGAGCGCCCGCACACTCGTCTCGTGGGTTGACTTAGGCATATGGAGTTCA-TCCCTAGTC
118 TTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCAT-GTC
13624070 TAA
182 TAA
* * * * * * *
13624073 GCATATGGAGTTCATTCCCAGCCTAAGAT-TGAACCAGATCGAGGGTTGCAGCAGCAAGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGA-ATCGAGGGTTGCGGCAGCAGGATCGAT
* * * * *
13624137 AGCACGAAGGGGGGACCAGGCTGAT-CTCCGGCTTGC-TCATTCTGCCTCTCCAGCTGGCTCAGC
65 AGCACGCAGGGGGGACCAGGCCGATCCT-TGGCTTGCGT-ATTCTGCCTCTCCAGTTGGCTGAGC
* ** * *
13624200 GCCTGCACGCTCGTTTTATGGGTTGACTTAGGCATCCAAAGTTCATTCCCA-GTCTAA
128 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCTAA
13624257 G
1 G
13624258 ATCGGATCAG
Statistics
Matches: 298, Mismatches: 63, Indels: 40
0.74 0.16 0.10
Matches are distributed among these distances:
183 2 0.01
184 139 0.47
185 2 0.01
186 3 0.01
187 2 0.01
188 1 0.00
190 2 0.01
192 1 0.00
193 2 0.01
194 1 0.00
195 8 0.03
196 134 0.45
197 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTTGCGGCAGCAGGATCGATA
GCACGCAGGGGGGACCAGGCCGATCCTTGGCTTGCGTATTCTGCCTCTCCAGTTGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:13624088 original size:538 final size:537
Alignment explanation
Indices: 13623070--13624416 Score: 1732
Period size: 538 Copynumber: 2.5 Consensus size: 537
13623060 GTAAATCACA
* * * * * * * ** *
13623070 GGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCTGACCCACTCAACGCCCGCACACTC
1 GGGGACCGGGCCGATCCTCGGCTTGCTCATTCTGCCTCTATGATCGGCTCAGCGCCCGCACACTC
* * * * * **
13623135 ATTTCGTGGGTTGACTTAGGCATACGGAGATCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
66 ATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAATTGAGGGT
** * * *
13623200 TGCGACAGCACGATCGACAGCACGCAGGGGGGGACCGGGTCGGTCCCTGGCTTACGCATTTTGCC
131 TGCGGTAGCAGGATCGACAGCACGCA-GGGGGGA-CGGGACGGTCCCTGGCTTGCGCATTTTGCC
* *
13623265 TCTCCGGTGGGTTGAGTGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
194 TCTCCGGTGGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * *
13623330 CATGTCTAAGCATATGGAGTTCATTCCCAGTATAAGATTGGATCAGACCGAGGGTTGCGGTAGTA
259 CATGTCTAAGCATACGAAGTTCATTCCCAGTATAAGATCGGATCAGACCAAGGGTTGCGGCAGCA
* * * * *
13623395 GGTCCAGTAGCAGCATCAGCAGCATGCAGGAGGGACCAGGCTGATCCCTAACTTATGCATTCTGC
324 GGTCCAGTAGCAGCACCAGCAGCACGCAGGAGGGACCAAGCCGATCCCTAACTTACGCATTCTGC
* * *
13623460 CTCTCCGGTCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATC
389 CTCTCCAGTCGGTTGAGCGCCCGCACACTCATCTCGTGGGTTGACTTAGGCATACGGAGTTCATC
* * *
13623525 CCCAGTCTAAGCATATGGAGTTCATTCCCAGCCTAAGATCAAACCGGATCGAGGGTTACGGTAGC
454 CCCAGTCTAAGCATATGGAGTTCATTCCCAGCCTAAGATCAAACCAGATCGAGGGTTACAGCAGC
*
13623590 AAGATCGACAGCACGCAGG
519 AAGATCGACAGCACGAAGG
* *
13623609 GGGGACCGGGCCGATCCTCGGCTTGCTCATTCTACCTCTATGATCGGCTCAGCGCCCGCACCCTC
1 GGGGACCGGGCCGATCCTCGGCTTGCTCATTCTGCCTCTATGATCGGCTCAGCGCCCGCACACTC
13623674 ATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAATTGAGGGT
66 ATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAATTGAGGGT
* * * * *
13623739 TGCGGTAGCAGGATCGATAGCACGCAGGGGGGATCGGGCCGATCCTTGGCTTGCGTATTTTGCCT
131 TGCGGTAGCAGGATCGACAGCACGCAGGGGGGA-CGGGACGGTCCCTGGCTTGCGCATTTTGCCT
* * * *
13623804 CTCCGGTTGGCTGAGTGCCCACACGTTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCC
195 CTCCGGTGGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
* * *
13623869 ATGTCTAAGCATACGAAGTTCATTCTCAGTTTAAGATCGGATCGGACCAAGGGTTGCGGCAGCAG
260 ATGTCTAAGCATACGAAGTTCATTCCCAGTATAAGATCGGATCAGACCAAGGGTTGCGGCAGCAG
* * * * *
13623934 GTCCAGTAGTAGGACC-GACAGTACGCAGGGGGGACCAAGCCGATCCCTGACTTACGCATTCTGC
325 GTCCAGTAGCAGCACCAG-CAGCACGCAGGAGGGACCAAGCCGATCCCTAACTTACGCATTCTGC
* *
13623998 CTCTCCAGTCGGTTGAGCGCCCGCACACTCGTCTCGTGGGTTGACTTAGGCATATGGAGTTCATC
389 CTCTCCAGTCGGTTGAGCGCCCGCACACTCATCTCGTGGGTTGACTTAGGCATACGGAGTTCATC
* ** *
13624063 CCTAGTCTAAGCATATGGAGTTCATTCCCAGCCTAAGATTGAACCAGATCGAGGGTTGCAGCAGC
454 CCCAGTCTAAGCATATGGAGTTCATTCCCAGCCTAAGATCAAACCAGATCGAGGGTTACAGCAGC
*
13624128 AAGATCGATAGCACGAAGG
519 AAGATCGACAGCACGAAGG
* * * * *
13624147 GGGGACCAGGCTGAT-CTCCGGCTTGCTCATTCTGCCTCTCCA-GCT-GGCTCAGCGCCTGCACG
1 GGGGACCGGGCCGATCCT-CGGCTTGCTCATTCTGCCTCT--ATGATCGGCTCAGCGCCCGCACA
* * * **
13624209 CTCGTTTTATGGGTTGACTTAGGCATCCAAAGTTCATTCCCAGTCTAAGATCGGATC-AGATTGA
63 CTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGA-ATTGA
* * * * * * * * *
13624273 GGGTTTCAGTAGCAGGATCGACAACAAGCAGGGGGGACTTGAATGGTCCCTGGCTTGCACATTCT
127 GGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGAC-GGGACGGTCCCTGGCTTGCGCATTTT
* * * * ***
13624338 ACCTCTCTGGTGGGCTGAGCGCCCGTACGCTCGTTTTAAGGGTTGGCTTAGGCATACGGAGTTCA
191 GCCTCTCCGGTGGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
13624403 TTCCATGTCTAAGC
256 TTCCATGTCTAAGC
13624417 CCCAGTCGAA
Statistics
Matches: 698, Mismatches: 104, Indels: 13
0.86 0.13 0.02
Matches are distributed among these distances:
537 5 0.01
538 557 0.80
539 135 0.19
540 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (537 bp):
GGGGACCGGGCCGATCCTCGGCTTGCTCATTCTGCCTCTATGATCGGCTCAGCGCCCGCACACTC
ATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAATTGAGGGT
TGCGGTAGCAGGATCGACAGCACGCAGGGGGGACGGGACGGTCCCTGGCTTGCGCATTTTGCCTC
TCCGGTGGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
TGTCTAAGCATACGAAGTTCATTCCCAGTATAAGATCGGATCAGACCAAGGGTTGCGGCAGCAGG
TCCAGTAGCAGCACCAGCAGCACGCAGGAGGGACCAAGCCGATCCCTAACTTACGCATTCTGCCT
CTCCAGTCGGTTGAGCGCCCGCACACTCATCTCGTGGGTTGACTTAGGCATACGGAGTTCATCCC
CAGTCTAAGCATATGGAGTTCATTCCCAGCCTAAGATCAAACCAGATCGAGGGTTACAGCAGCAA
GATCGACAGCACGAAGG
Found at i:13624098 original size:26 final size:26
Alignment explanation
Indices: 13624047--13624099 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13624037 GTTGACTTAG
*
13624047 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATATGGAGTTCATCCCTAGCCTAA
13624073 GCATATGGAGTTCATTCCC-AGCCTAA
1 GCATATGGAGTTCA-TCCCTAGCCTAA
13624099 G
1 G
13624100 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCTAGCCTAA
Found at i:13624120 original size:196 final size:196
Alignment explanation
Indices: 13623760--13624128 Score: 434
Period size: 196 Copynumber: 1.9 Consensus size: 196
13623750 GATCGATAGC
* ** * * * * * * * *
13623760 ACGCAGGGGGGATCGGGCCGATCCTTGGCTTGCGTATTTTGCCTCTCCGGTTGGCTGAGTGCCCA
1 ACGCAGGGGGGACCAAGCCGATCCCTGACTTACGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCA
** * * *
13623825 CACGTTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGAAGTTC
66 CACACTCGTCTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATACGAAGTTC
* ** * * * *
13623890 ATTCTCAGTTTAAGATCGGATCGGACCAAGGGTTGCGGCAGCAGGTCCAGTAGTAGGACCGACAG
131 ATTCCCAGCCTAAGATCGAACCAGACCAAGGGTTGCAGCAGCAGGTCCAGTAGTAGGACCGACAG
13623955 T
196 T
* *
13623956 ACGCAGGGGGGACCAAGCCGATCCCTGACTTACGCATTCTGCCTCTCCAGTCGGTTGAGCGCCCG
1 ACGCAGGGGGGACCAAGCCGATCCCTGACTTACGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCA
** * *
13624021 CACACTCGTCTCGTGGGTTGACTTAGGCATATGGAGTTCATCCC-TAGTCTAAGCATATGGAGTT
66 CACACTCGTCTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCAT-GTCTAAGCATACGAAGTT
* * *
13624085 CATTCCCAGCCTAAGATTGAACCAGATCGAGGGTTGCAGCAGCA
130 CATTCCCAGCCTAAGATCGAACCAGACCAAGGGTTGCAGCAGCA
13624129 AGATCGATAG
Statistics
Matches: 140, Mismatches: 32, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
195 1 0.01
196 139 0.99
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (196 bp):
ACGCAGGGGGGACCAAGCCGATCCCTGACTTACGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCA
CACACTCGTCTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATACGAAGTTC
ATTCCCAGCCTAAGATCGAACCAGACCAAGGGTTGCAGCAGCAGGTCCAGTAGTAGGACCGACAG
T
Found at i:13624369 original size:158 final size:158
Alignment explanation
Indices: 13624081--13624415 Score: 361
Period size: 158 Copynumber: 2.1 Consensus size: 158
13624071 AAGCATATGG
* * * * *
13624081 AGTTCATTCCCAGCCTAAGATTGAACCAGATCGAGGGTTGCAGCAGCAAGATCGATAGCACGAAG
1 AGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTGCAGCAGCAAGATCGACAACAAGAAG
** * * *
13624146 GGGGGACCAGGCTGATCTCCGGCTTGCTCATTCTGCCTCTCCAGCTGGCTCAGCGCCTGCACGCT
66 GGGGGACCAGAATGATCTCCGGCTTGCACATTCTACCTCTCCAGCTGGCTCAGCGCCCGCACGCT
* *
13624211 CGTTTTATGGGTTGACTTAGGCATCCAA
131 CGTTTTAAGGGTTGACTTAGGCATACAA
* * * * * * *
13624239 AGTTCATTCCCAGTCTAAGATCGGATCAGATTGAGGGTTTCAGTAGCAGGATCGACAACAAGCAG
1 AGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTGCAGCAGCAAGATCGACAACAAGAAG
** * * * * *
13624304 GGGGGACTTGAATGGTC-CCTGGCTTGCACATTCTACCTCT-CTGGTGGGCTGAGCGCCCGTACG
66 GGGGGACCAGAATGATCTCC-GGCTTGCACATTCTACCTCTCCAGCT-GGCTCAGCGCCCGCACG
* **
13624367 CTCGTTTTAAGGGTTGGCTTAGGCATACGG
129 CTCGTTTTAAGGGTTGACTTAGGCATACAA
13624397 AGTTCATT-CCATGTCTAAG
1 AGTTCATTCCCA-GTCTAAG
13624416 CCCCAGTCGA
Statistics
Matches: 145, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
157 8 0.06
158 137 0.94
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTGCAGCAGCAAGATCGACAACAAGAAG
GGGGGACCAGAATGATCTCCGGCTTGCACATTCTACCTCTCCAGCTGGCTCAGCGCCCGCACGCT
CGTTTTAAGGGTTGACTTAGGCATACAA
Found at i:13624976 original size:26 final size:26
Alignment explanation
Indices: 13624940--13624992 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13624930 GTTGACTTGG
*
13624940 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13624966 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13624992 G
1 G
13624993 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13625328 original size:159 final size:158
Alignment explanation
Indices: 13624966--13625467 Score: 363
Period size: 158 Copynumber: 3.2 Consensus size: 158
13624956 CCCAGTCTAA
* * * * **
13624966 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTGGCAGCAGGATTGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGTGGCAGCAGGACTGACA
* * * * * * * * *
13625031 GCACGCAGGGGGGACCGAGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCC
66 GCACGCAAGGGGGACCGAGCCAATCCCCAGCTTGCGCATTATCCCTCTCCGACCGGCTCAACACC
* * **
13625096 CGTACGCCCGTTTCGTGGGTTGGTTTAG
131 CGAACGCCCATTTCGTGGGTTGACTTAG
* ** *
13625124 GCATA-GAGAGTTCATT-CCATGTCTAAG-CCCTAGTCGGATCGAAGGTTGTGGCAGC-GAGACC
1 GCATACG-GAGTTCATTCCCA-GTCTAAGATCGGA-TCGGACCGAAGGTTGTGGCAGCAG-GA-C
* * *
13625185 T-ACAGCACGCAAAGGGGGACCGGGTCAATCCCCAGCTTGCGCATTATCCCTCTTCGACCGGCTC
61 TGACAGCACGC-AAGGGGGACCGAGCCAATCCCCAGCTTGCGCATTATCCCTCTCCGACCGGCTC
* * * * *
13625249 AACATCTGAATGCTCATTTTGTGGGTTGACTTAG
125 AACACCCGAACGCCCATTTCGTGGGTTGACTTAG
** * *
13625283 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGCAGCAGTAGGA-TCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGTGGCAGCAGGACT-GAC
* * * ** * * * * ** * *****
13625347 AGCACAC-AGAGGGGATCAAGCCGGTCCCCGGCTTGCACATTTTGCCTCTCCGGTCGGTTGGGTG
65 AGCACGCAAG-GGGGACCGAGCCAATCCCCAGCTTGCGCATTATCCCTCTCCGACCGGCTCAACA
* * * *
13625411 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCCGAACGCCCATTTCGTGGGTTGACTTAG
13625441 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
13625468 CATACGGAGT
Statistics
Matches: 264, Mismatches: 66, Indels: 28
0.74 0.18 0.08
Matches are distributed among these distances:
157 12 0.05
158 130 0.49
159 115 0.44
160 7 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGTGGCAGCAGGACTGACA
GCACGCAAGGGGGACCGAGCCAATCCCCAGCTTGCGCATTATCCCTCTCCGACCGGCTCAACACC
CGAACGCCCATTTCGTGGGTTGACTTAG
Found at i:13625477 original size:26 final size:26
Alignment explanation
Indices: 13625441--13625493 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13625431 GTTGGCTTAG
13625441 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13625467 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13625493 G
1 G
13625494 ATAGGACAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13626179 original size:26 final size:26
Alignment explanation
Indices: 13626149--13626201 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13626139 GTTGACATCG
*
13626149 GCATACGGAGTTCATCCCCAGTATAA
1 GCATACGGAGTTAATCCCCAGTATAA
* *
13626175 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTATAA
13626201 G
1 G
13626202 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTATAA
Found at i:13626556 original size:26 final size:26
Alignment explanation
Indices: 13626520--13626572 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13626510 TTGAACTTTG
13626520 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13626546 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13626572 G
1 G
13626573 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13626624 original size:20 final size:22
Alignment explanation
Indices: 13626581--13626628 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 22
13626571 AGATTGGATC
13626581 GGATCGAGGGATTGAGACAGCT
1 GGATCGAGGGATTGAGACAGCT
*
13626603 GGAT-GAGGGGTTGAGA-AGCT
1 GGATCGAGGGATTGAGACAGCT
13626623 GGATCG
1 GGATCG
13626629 GTACCGAACG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 8 0.33
21 12 0.50
22 4 0.17
ACGTcount: A:0.25, C:0.10, G:0.46, T:0.19
Consensus pattern (22 bp):
GGATCGAGGGATTGAGACAGCT
Found at i:13627787 original size:26 final size:26
Alignment explanation
Indices: 13627751--13627803 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13627741 GTTGACATAG
13627751 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
13627777 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
13627803 G
1 G
13627804 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:13628155 original size:26 final size:26
Alignment explanation
Indices: 13628119--13628171 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13628109 GTTGACTTGG
13628119 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13628145 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13628171 G
1 G
13628172 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13628282 original size:368 final size:354
Alignment explanation
Indices: 13627422--13628488 Score: 954
Period size: 368 Copynumber: 3.0 Consensus size: 354
13627412 GTTGACTTAG
* * * * * * * *
13627422 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTTGC-AGTAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAAGGTTACGA-CAGCAGGATCGAC
* * * * * * * * *
13627486 A-AAAGCAGGGGGGACTGGGCTGGTCCTCGGCTTGCGTATTCTGCCTCTCCAGCCGACTGAGCGC
65 AGCACGCAGGGGGGACTGGGCCGATCCTCGGCTTGCGAATTCTG-CTCTTCAACTGGCTGAGCGC
13627550 CCGCACGA-TCGTTTCGTGGGTTGGCTTAGGCATAACGGAGTTCATTCCATGTCTAAGCCTCAGT
129 CCGCAC-ACTCGTTTCGTGGGTTGGCTTAGGCAT-ACGGAGTTCATTCCATGTCTAAGCCTCAGT
* * * * *
13627614 CGGACCGAGGGTTGTGGCAGCAGGACCAACAGTGGGATCAGCAGCATGCAGAAGGGGATCGGGCT
192 CGGATCGAGGGTTATGGCAGCAGGACCAACAGCGGGATCAACAGCACGCAGAAGGGGATCGGGCT
* * * * * *
13627679 GATCCCTAGCTTGCGCATTATGCCTCTCCGACCGGTTGAGCACCCGCACGCTCGTTTTGTGGGTT
257 GATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCACCCACACACTCATTTCGTGGGTT
*
13627744 GACATAGGCATACGGAGTTCATCCCTAGTCTAA
322 GACATAGGCATACGGAGTTCATCCCCAGTCTAA
* * *
13627777 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAAATCGAAGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAAGGTTACGACAGCAGGATCGACA
* * * * * * *
13627842 GCACGCAGGAGGGACCGGGCCGATCC-CTGGCTTACGCATTCTGTCTCTCCAACTGGTTGAGTGC
66 GCACGCAGGGGGGACTGGGCCGATCCTC-GGCTTGCGAATTCTG-CTCTTCAACTGGCTGAGCGC
* * * * ** * *
13627906 CTGCACACTCGTTTTGTGGGTTGACCTAGGTGTACGGAGTTCATTTCATGTCCAAGCCTCAGTTC
129 CCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAG-TC
* **** *
13627971 -GATCGAGGGTTATGGCAGTAGGACTGGTAGCGGGATCAACAGCACGTAG-AGGAGGATCGGGCT
193 GGATCGAGGGTTATGGCAGCAGGACCAACAGCGGGATCAACAGCACGCAGAAGG-GGATCGGGCT
*
13628034 GATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCCTCTCCTGCTGGCTGAGCACCCACACACT
257 GATCCCCAGCTTGCGCATTATGCCTCTCCGA----------C--C-GGCTGAGCACCCACACACT
* *
13628099 CATTTCGTGGGTTGACTTGGGCATACGGAGTTCATCCCCAGTCTAA
309 CATTTCGTGGGTTGACATAGGCATACGGAGTTCATCCCCAGTCTAA
* ** ** * **
13628145 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGA-CTGAGGGTTACGACAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATC-GAAGGTTACGACAGCAGGATCGAC
* * *
13628209 AGCACGCAGGGGGGACTGGGCCGATCCTCGACTTGCAAATTCTGCGTCTTCGACTGGCTGAGCGC
65 AGCACGCAGGGGGGACTGGGCCGATCCTCGGCTTGCGAATTCTGC-TCTTCAACTGGCTGAGCGC
* * * *
13628274 CGGCACACTCGTTTCATGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGCC-CTAGTC
129 CCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTC-AGTC
* * * * * *
13628338 GGATCGAGGGTTGTGGTAGC--G------A----GATCGATAGCATGCAG-AGAGGGATCGGGCC
193 GGATCGAGGGTTATGGCAGCAGGACCAACAGCGGGATCAACAGCACGCAGAAG-GGGATCGGGCT
* * * * * * * *
13628390 GATCCCCGGCTTGCGCATTATCCCTCTTCGGCTGGCTCAGCATCCTA-ACGCTCATTTCGTGGGT
257 GATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCA-CCCACACACTCATTTCGTGGGT
* * *
13628454 TGACTTAGGCATACGGTGTTCATTCCCAGTCTAA
321 TGACATAGGCATACGGAGTTCATCCCCAGTCTAA
13628488 G
1 G
13628489 ATCAGACCAG
Statistics
Matches: 584, Mismatches: 102, Indels: 64
0.78 0.14 0.09
Matches are distributed among these distances:
343 56 0.10
344 3 0.01
346 1 0.00
354 3 0.01
355 161 0.28
356 125 0.21
357 1 0.00
360 1 0.00
365 1 0.00
366 1 0.00
367 6 0.01
368 224 0.38
369 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (354 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAAGGTTACGACAGCAGGATCGACA
GCACGCAGGGGGGACTGGGCCGATCCTCGGCTTGCGAATTCTGCTCTTCAACTGGCTGAGCGCCC
GCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAGTCGGA
TCGAGGGTTATGGCAGCAGGACCAACAGCGGGATCAACAGCACGCAGAAGGGGATCGGGCTGATC
CCCAGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCACCCACACACTCATTTCGTGGGTTGACA
TAGGCATACGGAGTTCATCCCCAGTCTAA
Found at i:13628646 original size:158 final size:158
Alignment explanation
Indices: 13628145--13628636 Score: 483
Period size: 158 Copynumber: 3.1 Consensus size: 158
13628135 CCCAGTCTAA
* ** * ** * *
13628145 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACGACAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGATA
* * * * *
13628210 GCACGCAGGGGGGA-CTGGGCCGATCCTCGACTTGCAAATTCTGCGTCTTCGACTGGCTGAGCGC
66 GCACGCAAGGGGGATC-GGGCCGATCCCCGACTTGCACATTCTACCTCTTCGACTGGCTGAGCGC
* *
13628274 CGGCACACTCGTTTCATGGGTTGGCTTAG
130 CCGCACACTCATTTCATGGGTTGGCTTAG
* * ** * * *
13628303 ACATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-TCGGATCGAGGGTTGTGGTAGC-GAGATCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCGAGGGTTGTGGCAGCAG-GATCG
* * * * * * * *
13628365 ATAGCATGCAGAGAGGGATCGGGCCGATCCCCGGCTTGCGCATTATCCCTCTTCGGCTGGCTCAG
63 ATAGCACGCA-AGGGGGATCGGGCCGATCCCCGACTTGCACATTCTACCTCTTCGACTGGCTGAG
** ** * * *
13628430 CATCCTAACGCTCATTTCGTGGGTTGACTTAG
127 CGCCCGCACACTCATTTCATGGGTTGGCTTAG
* * *
13628462 GCATACGGTGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGATA
* * *
13628527 GCACGTAAGGGGGATCGGGCC-AGTCCCCGACTTGCACATTCTACCTCTCCGA-TCGGTTGAGCG
66 GCACGCAAGGGGGATCGGGCCGA-TCCCCGACTTGCACATTCTACCTCTTCGACT-GGCTGAGCG
*
13628590 CCCGCACACTTATTTCATGGGTTGGCTTAG
129 CCCGCACACTCATTTCATGGGTTGGCTTAG
13628620 GCATACGGAGTTCATTC
1 GCATACGGAGTTCATTC
13628637 TATGTCTAAG
Statistics
Matches: 259, Mismatches: 65, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
157 6 0.02
158 132 0.51
159 116 0.45
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGATA
GCACGCAAGGGGGATCGGGCCGATCCCCGACTTGCACATTCTACCTCTTCGACTGGCTGAGCGCC
CGCACACTCATTTCATGGGTTGGCTTAG
Found at i:13628780 original size:184 final size:181
Alignment explanation
Indices: 13628462--13628831 Score: 442
Period size: 184 Copynumber: 2.0 Consensus size: 181
13628452 GTTGACTTAG
* * * **
13628462 GCATACGGTGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAGGATCGACA
* * *
13628527 GCACGTAAGGGGGATCGGGCCAGTCCCCGACTTGCACATTCTACCTCTCCGATCGGTTGAGCGCC
66 ACACGTAAGGGGGACCGGGCCAGTCCCCGACTTGCACATTCTACCTCTCCGATCGCTT--G-GCC
* * *
13628592 CGCACACTTATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAA
128 CGCACACTCATTTCATGGGTCGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
13628646 GCATATGGAGTTCATTCCCAATCTAAGATCAGACC-GAATCAAGGGTTACGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAG-ACCAAGGGTTACGGCAGCAGGATCGAC
* * * *
13628710 AACACG-CAGGGGAGACCGGGCC-GATCCCCGGCTTGCACATTCTGCCTCTTCAGCCGATCTCTT
65 AACACGTAAGGGG-GACCGGGCCAG-TCCCCGACTTGCACATTCTACCTC-T---CCGATCGCTT
* * *
13628773 -GCCCGCACGCTCATTTCCTGGGTCGGCTTAGGCATACGGAGTTTATTCCATGTCTAA
124 GGCCCGCACACTCATTTCATGGGTCGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
13628830 GC
1 GC
13628832 CCTAGCCAAA
Statistics
Matches: 159, Mismatches: 20, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
183 7 0.04
184 143 0.90
185 1 0.01
188 8 0.05
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24
Consensus pattern (181 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAGGATCGACA
ACACGTAAGGGGGACCGGGCCAGTCCCCGACTTGCACATTCTACCTCTCCGATCGCTTGGCCCGC
ACACTCATTTCATGGGTCGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:13628960 original size:159 final size:159
Alignment explanation
Indices: 13628772--13629139 Score: 416
Period size: 159 Copynumber: 2.3 Consensus size: 159
13628762 GCCGATCTCT
* * * * *
13628772 TGCCCGCACGCTCATTTCCTGGGTCGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCCCTAG
1 TGCCCGAACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCCCCAG
* * *
13628837 CCAAACCGAGAGTTGTCGCAGTGGGACCTG-CAGCACGCAAAGGGGGACC-GAGTCGATCCCCGG
66 CCAAACCGAGAGTTGTCGCAGCGAGACC-GACAGCACGCAAAGGGGGACCGGA-TCGATCCCCGA
** *
13628900 CTTATGCATTATGCCTCTTCGGTCAGCTCAG
129 CTTACACAGTATGCCTCTTCGGTCAGCTCAG
* * * * *
13628931 TGCTCGTATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
1 TGCCCGAACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCCCCAG
* ** * * * *
13628996 TCGGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAAAGGGGGATCGGATCGATCCCTGACT
66 CCAAACCGAGAGTTGTCGCAGCGAGACCGACAGCACGCAAAGGGGGACCGGATCGATCCCCGACT
* * * *
13629061 TGCACAGTATTCCTCTTCGGTCGGTTCAG
131 TACACAGTATGCCTCTTCGGTCAGCTCAG
* * * * *
13629090 TGCCCGAACGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTTATTCC
1 TGCCCGAACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCC
13629140 CAGTTTAAGA
Statistics
Matches: 171, Mismatches: 36, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
158 1 0.01
159 168 0.98
160 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
TGCCCGAACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCCCCAG
CCAAACCGAGAGTTGTCGCAGCGAGACCGACAGCACGCAAAGGGGGACCGGATCGATCCCCGACT
TACACAGTATGCCTCTTCGGTCAGCTCAG
Found at i:13629011 original size:501 final size:501
Alignment explanation
Indices: 13628083--13629148 Score: 1150
Period size: 501 Copynumber: 2.1 Consensus size: 501
13628073 TCCTGCTGGC
* * * *
13628083 TGAGCACCCACACACTCATTTCGTGGGTTGACTTGGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTAAGCA
* ** * * ** *
13628148 TATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACGACAGCAGGATCGGTAGCA
65 TATGGAGTTCATTCCCAATCTAAGATCAGACCGAACTAAGGGTTACGACAGCAGGATCGACAACA
* * * * *
13628213 CGCAGGGGGGACTGGGCCGATCCTCGACTTGCAAATTCTGCGTCTTCGACTGGCTGAGCGCCGGC
130 CGCAGGGGAGACCGGGCCGATCCCCGACTTGCAAATTCTGCCTCTTCGACCGGCTGAGCGCCGGC
* * * * ** *
13628278 ACACTCGTTTCATGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGATC
195 ACACTCATTTCATGGGTCGGCTTAGACATACGGAGTTCATTCCATGTCTAAGCCCTAGCCAAACC
* * * * * * * * * *
13628343 GAGGGTTGTGGTAGCGAGATCGATAGCATGCAGAGAGGGATCGGGCCGATCCCCGGCTTGCGCAT
260 GAGAGTTGTCGCAGCGAGACCGACAGCACGCAAAGAGGGACCGAGCCGATCCCCGGCTTACGCAT
* * * *
13628408 TATCCCTCTTCGGCTGGCTCAGCATCCTAACGCTCATTTCGTGGGTTGACTTAGGCATACGGTGT
325 TATCCCTCTTCGGCTAGCTCAGCATCCTAACGCCCATTTCATGGGTTGACTTAGGCATACGGAGT
* * *
13628473 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGC-AGGATCGACAGCACG-TAAG
390 TCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTGTGGCAGCGA-GACCGACAGCACGCAAAG
* * *
13628536 GGGGATCGGGCC-AGTCCCCGACTTGCACATTCTACCTCTCCGATCGGT
454 GGGGATCGGACCGA-TCCCCGACTTGCACAGTATACCTCTCCGATCGGT
* * * *
13628584 TGAGCGCCCGCACACTTATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCA
1 TGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCA
*
13628649 TATGGAGTTCATTCCCAATCTAAGATCAGACCGAA-TCAAGGGTTACGGCAGCAGGATCGACAAC
65 TATGGAGTTCATTCCCAATCTAAGATCAGACCGAACT-AAGGGTTACGACAGCAGGATCGACAAC
* * * **
13628713 ACGCAGGGGAGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTTC-AGCCGATCTCTTGC-C
129 ACGCAGGGGAGACCGGGCCGATCCCCGACTTGCAAATTCTGCCTCTTCGA-CCG-GCT-GAGCGC
* * * *
13628776 C-GCACGCTCATTTCCTGGGTCGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCCCTAGCCA
191 CGGCACACTCATTTCATGGGTCGGCTTAGACATACGGAGTTCATTCCATGTCTAAGCCCTAGCCA
* * * *
13628840 AACCGAGAGTTGTCGCAGTGGGACCTG-CAGCACGCAAAGGGGGACCGAGTCGATCCCCGGCTTA
256 AACCGAGAGTTGTCGCAGCGAGACC-GACAGCACGCAAAGAGGGACCGAGCCGATCCCCGGCTTA
* * * * *
13628904 TGCATTATGCCTCTTCGG-TCAGCTCAGTGC-TCGT-ATGCCCATTTCATGGGTTGGCTTAGGCA
320 CGCATTATCCCTCTTCGGCT-AGCTCA--GCATCCTAACGCCCATTTCATGGGTTGACTTAGGCA
* * * *
13628966 TAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGAGACCGACAG
382 TACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCAGACCGAGGGTTGTGGCAGCGAGACCGACAG
* * * * *
13629029 CACGCAAAGGGGGATCGGATCGATCCCTGACTTGCACAGTATTCCTCTTCGGTCGGT
445 CACGCAAAGGGGGATCGGACCGATCCCCGACTTGCACAGTATACCTCTCCGATCGGT
* * * * * * * *
13629086 TCAGTGCCCGAACGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTTATTCCCAGTTTAAG
1 TGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAG
13629149 ATCGGACTAG
Statistics
Matches: 462, Mismatches: 88, Indels: 29
0.80 0.15 0.05
Matches are distributed among these distances:
500 8 0.02
501 346 0.75
502 101 0.22
503 7 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (501 bp):
TGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCAT
ATGGAGTTCATTCCCAATCTAAGATCAGACCGAACTAAGGGTTACGACAGCAGGATCGACAACAC
GCAGGGGAGACCGGGCCGATCCCCGACTTGCAAATTCTGCCTCTTCGACCGGCTGAGCGCCGGCA
CACTCATTTCATGGGTCGGCTTAGACATACGGAGTTCATTCCATGTCTAAGCCCTAGCCAAACCG
AGAGTTGTCGCAGCGAGACCGACAGCACGCAAAGAGGGACCGAGCCGATCCCCGGCTTACGCATT
ATCCCTCTTCGGCTAGCTCAGCATCCTAACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTT
CATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAAAGGG
GGATCGGACCGATCCCCGACTTGCACAGTATACCTCTCCGATCGGT
Found at i:13629749 original size:26 final size:26
Alignment explanation
Indices: 13629713--13629765 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13629703 GTTGACTTAG
*
13629713 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
13629739 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
13629765 G
1 G
13629766 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:13630086 original size:26 final size:26
Alignment explanation
Indices: 13630056--13630108 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13630046 GTTGACTTAG
13630056 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
13630082 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
13630108 G
1 G
13630109 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:13630895 original size:158 final size:157
Alignment explanation
Indices: 13630607--13630942 Score: 462
Period size: 158 Copynumber: 2.1 Consensus size: 157
13630597 TAAGCATACA
* * *
13630607 GAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGTGACAGCAGGATCGACAGCACG-A
** * * *
13630672 AGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTCAACGCCCGTACGC
65 AGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTCAACGCCCGCACGC
*
13630737 TCGTTTCGTGGGTTGACTTAGGCACACG
130 TCGTTTCATGGGTTGACTTAGGCACACG
*
13630765 GAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGT-ACTAGCAGGATCGACAGCAC-A
1 GAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGTGAC-AGCAGGATCGACAGCACGA
* * * *
13630828 CAGGGGGCACCAGGCTGATCCCCGGCTTGCGTATTCTGCCTCTCCGACCGACTGAGCGCCCGCAC
65 -AGGGGG-ACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTCAACGCCCGCAC
* *
13630893 GCTCGTTTCATGGGTTGGCTTAGGCATACG
128 GCTCGTTTCATGGGTTGACTTAGGCACACG
13630923 GAGTTCATT-CCATGTCTAAG
1 GAGTTCATTCCCA-GTCTAAG
13630943 CATACGGAGT
Statistics
Matches: 158, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
156 1 0.01
157 10 0.06
158 147 0.93
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGTGACAGCAGGATCGACAGCACGAA
GGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTCAACGCCCGCACGCT
CGTTTCATGGGTTGACTTAGGCACACG
Found at i:13630946 original size:26 final size:26
Alignment explanation
Indices: 13630916--13630967 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13630906 GTTGGCTTAG
13630916 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13630942 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13630968 TATTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13631680 original size:26 final size:26
Alignment explanation
Indices: 13631641--13631693 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13631631 GTTGACTTAG
*
13631641 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAATTCACT-CCCAGTCTAA
*
13631667 GCATATGGAATTCACTCCCAGTCTAA
1 GCATACGGAATTCACTCCCAGTCTAA
13631693 G
1 G
13631694 ATTGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAATTCACTCCCAGTCTAA
Found at i:13632005 original size:157 final size:159
Alignment explanation
Indices: 13631708--13632167 Score: 387
Period size: 157 Copynumber: 2.9 Consensus size: 159
13631698 GATTGGATCG
* * * * * ** * *
13631708 AGGGTTTCGGCAGCAGGATCTACAGCACGCA-G-GGGGACCGGGCTAATCCTCGGCTTGCGCATT
1 AGGGTTGCGACAGCAGGACCGACAGCACACACGAGGGGACCGGGCCGATCCCCAGCTTGCGCATT
* ** * * * * * **
13631771 CTGTCTCTCCGGCCGGCTAAGTGCCCGCACGCC-CGTTTCATGGGTTGGCTTAGGCATAGGGAGT
66 ATACCTCTCCGGTCAGCTCAGTGCCCGCAC-CCTTGTTTCGTGGGTTGGCTTAGGCATACAGAGT
** ** * *
13631835 TTGTTCCATGTCTAAGCCCCAGCCGGACCG
130 TCATTCCATGTCTAAGCCCCAAACAGACCA
* * ** * * * *
13631865 AGGGTTGTGGCAGTGGGACCGGCAGCA-ATA-GAGGGGGACCGGGCCGAT-CCCTGATTTGCGCA
1 AGGGTTGCGACAGCAGGACCGACAGCACACACGA-GGGGACCGGGCCGATCCCCAG-CTTGCGCA
* * * *
13631927 TTATGCCTCT-TGGTCAGCTCAGTGCCCGCACCCTTGTTTCGTGGCTTGACTTAGGCATACAGAG
64 TTATACCTCTCCGGTCAGCTCAGTGCCCGCACCCTTGTTTCGTGGGTTGGCTTAGGCATACAGAG
****
13631991 TTCATTCCCA-GTCTAAGATTGAAACAGACCA
129 TTCATT-CCATGTCTAAGCCCCAAACAGACCA
* * *
13632022 AGGGTTGCGACAGCAGGATCGACAGCACACACGAGGGGATCGGGTCGATCCCCAGCTTGCGCATT
1 AGGGTTGCGACAGCAGGACCGACAGCACACACGAGGGGACCGGGCCGATCCCCAGCTTGCGCATT
* * * * *
13632087 CTACCTCTCCGGTCGGCTGAGTGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATATAGAGTT
66 ATACCTCTCCGGTCAGCTCAGTGCCCGCACCCTTGTTTCGTGGGTTGGCTTAGGCATACAGAGTT
13632152 CATTCCATGTCTAAGC
131 CATTCCATGTCTAAGC
13632168 ATATGGAGTT
Statistics
Matches: 236, Mismatches: 57, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
156 4 0.02
157 102 0.43
158 64 0.27
159 66 0.28
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
AGGGTTGCGACAGCAGGACCGACAGCACACACGAGGGGACCGGGCCGATCCCCAGCTTGCGCATT
ATACCTCTCCGGTCAGCTCAGTGCCCGCACCCTTGTTTCGTGGGTTGGCTTAGGCATACAGAGTT
CATTCCATGTCTAAGCCCCAAACAGACCA
Found at i:13632176 original size:26 final size:26
Alignment explanation
Indices: 13632140--13632192 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13632130 GTTGGCTTAG
13632140 GCATATAGAGTTCA-TTCCATGTCTAA
1 GCATATAGAGTTCATTTCCA-GTCTAA
*
13632166 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATATAGAGTTCATTTCCAGTCTAA
13632192 G
1 G
13632193 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATATAGAGTTCATTTCCAGTCTAA
Found at i:13633704 original size:159 final size:156
Alignment explanation
Indices: 13633411--13633717 Score: 366
Period size: 159 Copynumber: 1.9 Consensus size: 156
13633401 GATCAGATCA
* *
13633411 GACCGAGTGTTGTGGTAGCAGGATCGACAGCACGTAGGGGGAATGGGCTGATCCCCAACTTGTGA
1 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGGGAATGGGCTGATCCCCAACTTGTGA
* ** * *** * * * **
13633476 TTCTGCCTCTCCGGTCGGCTGAACGTTCGCACGCCCGTTTCATGGGTTGGGTTAGGCATAGGGAG
66 TTATGCCTCTCCGACCGACTGAACACCCGCACACCCGTTTCATAGGTTGGCTTAGGCATACAGAG
*
13633541 TTCATTCCATGTCTAAGCCCTAGCCG
131 TTCATTCCACGTCTAAGCCCTAGCCG
* *
13633567 GACCGAGGGTTGTGGCAGCAGGATCGATAGCACGTAGAAGGGG-ATCGGG-TCGATCCCCATCTT
1 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAG--GGGGAAT-GGGCT-GATCCCCAACTT
* **
13633630 GTGCATTATGCCTCTCCGACCGACTGAGCACCCGCACACTTGTTTCATAGGTTGGCTTAGGCATA
62 GTG-ATTATGCCTCTCCGACCGACTGAACACCCGCACACCCGTTTCATAGGTTGGCTTAGGCATA
*
13633695 CAGAGTTCATTTCACGTCTAAGC
126 CAGAGTTCATTCCACGTCTAAGC
13633718 ATACAGAGTT
Statistics
Matches: 125, Mismatches: 21, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
156 34 0.27
157 3 0.02
158 21 0.17
159 67 0.54
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (156 bp):
GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGGGAATGGGCTGATCCCCAACTTGTGA
TTATGCCTCTCCGACCGACTGAACACCCGCACACCCGTTTCATAGGTTGGCTTAGGCATACAGAG
TTCATTCCACGTCTAAGCCCTAGCCG
Found at i:13633739 original size:26 final size:26
Alignment explanation
Indices: 13633690--13633742 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13633680 GTTGGCTTAG
*
13633690 GCATACAGAGTTCATTTCACGTCTAA
1 GCATACAGAGTTCATTCCACGTCTAA
13633716 GCATACAGAGTTCATTCC-CAGTCTAA
1 GCATACAGAGTTCATTCCAC-GTCTAA
13633742 G
1 G
13633743 ATTTTGAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCACGTCTAA
Found at i:13634899 original size:26 final size:26
Alignment explanation
Indices: 13634870--13634923 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
13634860 GTTGGCTTAG
* *
13634870 GAATGCGGAGTTCATT-CCATGTCTAA
1 GAATACGGAGTGCATTCCCA-GTCTAA
*
13634896 GAATATGGAGTGCATTCCCAGTCTAA
1 GAATACGGAGTGCATTCCCAGTCTAA
13634922 GA
1 GA
13634924 TCAGACTGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
GAATACGGAGTGCATTCCCAGTCTAA
Found at i:13635280 original size:26 final size:26
Alignment explanation
Indices: 13635250--13635302 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13635240 GTTGACTTAG
13635250 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13635276 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13635302 G
1 G
13635303 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13635793 original size:26 final size:26
Alignment explanation
Indices: 13635743--13635794 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13635733 CTTGGCTTAG
* *
13635743 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
13635769 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
13635795 CATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:13636347 original size:26 final size:26
Alignment explanation
Indices: 13636310--13636362 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13636300 GTTGACTTAG
*
13636310 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
13636336 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13636362 G
1 G
13636363 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13637033 original size:26 final size:26
Alignment explanation
Indices: 13637003--13637058 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
13636993 TGGGTTGGCT
13637003 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
*
13637029 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
13637055 TAAG
1 TAAG
13637059 ATTTTGTGTC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:13639923 original size:55 final size:55
Alignment explanation
Indices: 13639856--13639964 Score: 173
Period size: 55 Copynumber: 2.0 Consensus size: 55
13639846 CCACCCAAGT
* *
13639856 CCCTTGCAGGACTAGCATGATGGTTGGTGTCAACCATGCATGCGGGCGGCTGGTC
1 CCCTTGCAGGACTAGCATAAAGGTTGGTGTCAACCATGCATGCGGGCGGCTGGTC
* * *
13639911 CCCTTGCGGGACTAGCATAAAGGTTGGTGTCAACCTTGCGTGCGGGCGGCTGGT
1 CCCTTGCAGGACTAGCATAAAGGTTGGTGTCAACCATGCATGCGGGCGGCTGGT
13639965 ATGCTACAAC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.16, C:0.25, G:0.36, T:0.24
Consensus pattern (55 bp):
CCCTTGCAGGACTAGCATAAAGGTTGGTGTCAACCATGCATGCGGGCGGCTGGTC
Found at i:13640659 original size:26 final size:26
Alignment explanation
Indices: 13640623--13640682 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
13640613 GTTGACTTAG
13640623 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13640649 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13640675 G-AT-CGGAG
1 GCATACGGAG
13640683 CAGACCGAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
24 5 0.15
25 2 0.06
26 26 0.79
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13641499 original size:26 final size:26
Alignment explanation
Indices: 13641470--13641522 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13641460 GTTGACTTAG
13641470 GCATACAGAGATCA-TCCTCAGTCTAA
1 GCATACAGAGATCATTCC-CAGTCTAA
*
13641496 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
13641522 G
1 G
13641523 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGATCATTCCCAGTCTAA
Found at i:13643271 original size:26 final size:26
Alignment explanation
Indices: 13643242--13643294 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13643232 GTTGGCTTAG
* *
13643242 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13643268 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13643294 G
1 G
13643295 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13643943 original size:159 final size:158
Alignment explanation
Indices: 13643678--13643978 Score: 367
Period size: 159 Copynumber: 1.9 Consensus size: 158
13643668 CCGGATCAAG
* * * * *
13643678 GGTTGCGGTAGCAGGATCGGTAGTACGTAGGGGGGATCAGGCCGATCCCTAGCTTGCGCATTCTG
1 GGTTGCGGTAGCAGGATCGGTAGCACGCAGGGGGGATCAGGCCGAACCCCAGCTTGCGCATTATG
* * * * *
13643743 CCTCTCCAGTCGGTCGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCAT
66 CCTCTCCAGCCGGTCGAGCGCCCGCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
13643808 T-CCATGTCTAAGCCCCAGCTTAACCGAA
131 TCCCA-GTCTAAGCCCCAGCTTAACCGAA
* * *
13643836 GGTTGTGGTAGC-GAGATCGGTAGCACGCAGAGGGGGATCGGGCTGAACCCCAGCTTGCGCATTA
1 GGTTGCGGTAGCAG-GATCGGTAGCACGCAG-GGGGGATCAGGCCGAACCCCAGCTTGCGCATTA
* * * *
13643900 TGCCTCTTC-GACCGGCTC-AGCGCCCGTACACTCGTTTCATGGGTTGACTTATGCATACGGAGT
64 TGCCTCTCCAG-CCGG-TCGAGCGCCCGCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGT
*
13643963 TTATTCCCAGTCTAAG
127 TCATTCCCAGTCTAAG
13643979 ATCAGACGGA
Statistics
Matches: 120, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
157 1 0.01
158 26 0.22
159 88 0.73
160 5 0.04
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.25
Consensus pattern (158 bp):
GGTTGCGGTAGCAGGATCGGTAGCACGCAGGGGGGATCAGGCCGAACCCCAGCTTGCGCATTATG
CCTCTCCAGCCGGTCGAGCGCCCGCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCCCCAGCTTAACCGAA
Found at i:13645169 original size:159 final size:159
Alignment explanation
Indices: 13644993--13645351 Score: 384
Period size: 159 Copynumber: 2.3 Consensus size: 159
13644983 CGCACGTCCC
* * * * *
13644993 TTTCGTGGGATGGCTTAGGCATAAAGAGTTCATTCCATGTCGAAGCCCTAG-CCGGACCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCGAAG-ACTAGACCAGACCAAGGGT
* * * *
13645057 TATGGCGGCGGGATCGACAGCACGCAGTGAGG-GATCAGGTCGATCCCCAGCTTGCGCATTATGC
65 TATGACAGCAGGATCGACAGCACACAG-GAGGCGATCAGGTCGATCCCCAGCTTGCGCATTATGC
*
13645121 CTCTCCGA-TCGGCTCAACACCCGCACACTCA
129 CTCTCCGACT-AGCTCAACACCCGCACACTCA
* * * * * *
13645152 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATTGGATCAGACCAAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCGAAGACTAGACCAGACCAAGGGT
* * * * *
13645216 TATGACAGTAGGATCGACAGCACACAGGGGGCGATCGGGTCGATCTCCAGCTTGCGCATTCTGCC
65 TATGACAGCAGGATCGACAGCACACAGGAGGCGATCAGGTCGATCCCCAGCTTGCGCATTATGCC
* * * ** * *
13645281 TCTCCGACTAGCTGAGCGCTTGCACGCTCG
130 TCTCCGACTAGCTCAACACCCGCACACTCA
* *
13645311 TTTCATGGGTTGGCTTAGGCATACCGAGTTCATTCCATGTC
1 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
13645352 TAAGTATACA
Statistics
Matches: 164, Mismatches: 31, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
158 8 0.05
159 152 0.93
160 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCGAAGACTAGACCAGACCAAGGGTT
ATGACAGCAGGATCGACAGCACACAGGAGGCGATCAGGTCGATCCCCAGCTTGCGCATTATGCCT
CTCCGACTAGCTCAACACCCGCACACTCA
Found at i:13645353 original size:159 final size:159
Alignment explanation
Indices: 13645067--13645355 Score: 386
Period size: 159 Copynumber: 1.8 Consensus size: 159
13645057 TATGGCGGCG
* *
13645067 GGATCGACAGCACGCAGTGAGGGATCAGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCG
1 GGATCGACAGCACACAGTGAGGGATCAGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCA
* *
13645132 GCTCAACACCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
66 GCTCAACACCCGCACACTCATTTCATGGGTTGACTTAGGCATACCGAGTTCATTCCCAGTCTAAG
13645197 ATTGGATCAGACCAAGGGTTATGACAGTA
131 ATTGGATCAGACCAAGGGTTATGACAGTA
* * * *
13645226 GGATCGACAGCACACAG-GGGGCGATCGGGTCGATCTCCAGCTTGCGCATTCTGCCTCTCCGA-C
1 GGATCGACAGCACACAGTGAGG-GATCAGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGATC
* * * ** * * *
13645289 TAGCTGAGCGCTTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACCGAGTTCATT-CCATGTCT
65 -AGCTCAACACCCGCACACTCATTTCATGGGTTGACTTAGGCATACCGAGTTCATTCCCA-GTCT
13645353 AAG
128 AAG
13645356 TATACAAAGT
Statistics
Matches: 111, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
158 7 0.06
159 104 0.94
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (159 bp):
GGATCGACAGCACACAGTGAGGGATCAGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCA
GCTCAACACCCGCACACTCATTTCATGGGTTGACTTAGGCATACCGAGTTCATTCCCAGTCTAAG
ATTGGATCAGACCAAGGGTTATGACAGTA
Found at i:13646262 original size:26 final size:26
Alignment explanation
Indices: 13646211--13646263 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13646201 GTTGGCTTAG
*
13646211 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
13646237 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
13646263 G
1 G
13646264 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:13648817 original size:24 final size:20
Alignment explanation
Indices: 13648761--13648806 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
13648751 AATAGGTAAT
13648761 GGCACCAAGTGCACAAGCAG
1 GGCACCAAGTGCACAAGCAG
*
13648781 GGCACCAAGTGCATAAGCAG
1 GGCACCAAGTGCACAAGCAG
13648801 GGCACC
1 GGCACC
13648807 CAAGCAGTGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.33, C:0.30, G:0.30, T:0.07
Consensus pattern (20 bp):
GGCACCAAGTGCACAAGCAG
Found at i:13653219 original size:159 final size:159
Alignment explanation
Indices: 13653050--13653414 Score: 385
Period size: 158 Copynumber: 2.3 Consensus size: 159
13653040 CCGCACGCCT
* * **
13653050 ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCCGACCGAGGG
1 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCGAGGG
* * * * * * * * *
13653114 TTATGGTAGCGGGACCAACAGCACGCAGAGGGGGATCGGGCTGAT-CCTCAGCTTGCGCATTATG
66 TTATGGCAGCAGGACCAACAGCACACAGA-AGAGATCGGACCGATCCCT-AGCTTACGCATTATA
* **
13653178 CCTCTCCGGCCAGCTCAGCACCCGTACGCTC
129 CCTCTCCGACCAGCTCAGCACCCACACGCTC
* * * * * *
13653209 GTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCTGTCTAAG-ATCAGACCAAATCGAGGG
1 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCGAGGG
* * * * * * * *
13653273 TTGTGGCAGCAGGATCGACGGCACACAGAAGAGATCGGACCGGTCCCTGGCTTACGGATTCTACC
66 TTATGGCAGCAGGACCAACAGCACACAGAAGAGATCGGACCGATCCCTAGCTTACGCATTATACC
* *
13653338 TCTCCGACCAGTTGAGCACCCACACGCTC
131 TCTCCGACCAGCTCAGCACCCACACGCTC
* *
13653367 ATTTCATGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13653415 TACGGAGTTC
Statistics
Matches: 166, Mismatches: 37, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
158 89 0.54
159 77 0.46
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (159 bp):
ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCGAGGG
TTATGGCAGCAGGACCAACAGCACACAGAAGAGATCGGACCGATCCCTAGCTTACGCATTATACC
TCTCCGACCAGCTCAGCACCCACACGCTC
Found at i:13653386 original size:158 final size:157
Alignment explanation
Indices: 13652912--13653412 Score: 501
Period size: 159 Copynumber: 3.2 Consensus size: 157
13652902 CCCAGTCCAA
* * * *
13652912 GCATACAGAGTTCATTCCCA-GTC-AAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
13652975 AGCATGCAGGGGGGATCAGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCC-AGCCGGTTGAGCG
65 AGCACGCAGAGGGGATC-GGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGA-CCAGTTGAGCA
13653039 CCCGCACGC-CTATTTCGTGGGTTGGCTTAG
128 CCCGCACGCTC-ATTTCGTGGGTTGGCTTAG
* ** * * * * * *
13653069 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCCGACCGAGGGTTATGGTAGCGGGACCAAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
13653133 AGCACGCAGAGGGGGATCGGGCTGAT-CCTCAGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGC
65 AGCACGCAGA-GGGGATC-GGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGACCAGTTGAGC
* * *
13653197 ACCCGTACGCTCGTTTCGTGGGTTGACTTAG
127 ACCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * *
13653228 GCATATGGAGTTCATTCCCTGTCTAAGATCAGACCAAATCGAGGGTTGTGGCAGCAGGATCGACG
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * *
13653293 GCACACAGAAGAGATCGGACCGGTCCCTGGCTTACGGATTCTACCTCTCCGACCAGTTGAGCACC
66 GCACGCAGAGGGGATCGG-CCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCAGTTGAGCACC
* * *
13653358 CACACGCTCATTTCATGGGTTGGTTTAG
130 CGCACGCTCATTTCGTGGGTTGGCTTAG
13653386 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13653413 CATACGGAGT
Statistics
Matches: 272, Mismatches: 62, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
156 3 0.01
157 19 0.07
158 123 0.45
159 126 0.46
160 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGAGGGGATCGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCAGTTGAGCACCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:13653416 original size:26 final size:26
Alignment explanation
Indices: 13653386--13653438 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13653376 GTTGGTTTAG
13653386 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13653412 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13653438 G
1 G
13653439 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13653576 original size:185 final size:184
Alignment explanation
Indices: 13653228--13653596 Score: 465
Period size: 185 Copynumber: 2.0 Consensus size: 184
13653218 GTTGACTTAG
* * * * * *
13653228 GCATATGGAGTTCATTCCCTGTCTAAGATCAGACCAAATCGAGGGTTGTGGCAGCAGGATCGACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCAAGATCGACA
* * * * *
13653293 GCACACAGAAGAGATCGGACCGGTCCCTGGCTTACGGATTCTACCTCTCCGACCAGTTGAGCACC
66 GCACACAGAAGAGATCGGACCGATCCCCGACTTACGCATTCTACCTCTCCGACCAGCTGAGCACC
*
13653358 CACACGCTCATTTCATGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CACACGCTCATTTCATGGGTTGGTTTAGGCATACAGAGTTCATTCCATGTCTAA
* * *
13653412 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCAAGATCGACA
* ** * * *
13653477 GCACGCAAGGGGGGATC-GAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACC-GACTGAGC
66 GCACAC-AGAAGAGATCGGA-CCGATCCCCGACTTACGCATTCTACCTCTCCGACCAG-CTGAGC
* * *
13653540 ACCCGCATGCTCATTTCATGGGTTGGCTTT-GGCATACAGAGTTCGTTCCATGTCTAA
128 ACCCACACGCTCATTTCATGGGTTGG-TTTAGGCATACAGAGTTCATTCCATGTCTAA
13653597 ACCCCAGTCG
Statistics
Matches: 157, Mismatches: 24, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
184 64 0.41
185 90 0.57
186 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCAAGATCGACA
GCACACAGAAGAGATCGGACCGATCCCCGACTTACGCATTCTACCTCTCCGACCAGCTGAGCACC
CACACGCTCATTTCATGGGTTGGTTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:13653987 original size:366 final size:368
Alignment explanation
Indices: 13653336--13654003 Score: 842
Period size: 366 Copynumber: 1.8 Consensus size: 368
13653326 ACGGATTCTA
* * ** *
13653336 CCTCTCCGACCAGTTGAGCACCCACACGCTCATTTCATGGGTTGGTTTAGGCATACGGAGTTCAT
1 CCTCTCCGACCAGCTGAGCACCCACACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCAT
* * *
13653401 TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAG
66 TCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
* * * *
13653466 CAAGATCGACAGCACGCAAGGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGAC
131 CAAGATCGACACCACGCAAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTACCTCTCCAAC
* * * *
13653531 CGACTGAGCACCCGCATGCTCATTTCATGGGTTGGCTTTGGCATACAGAGTTCGTTCCATGTCTA
196 CGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
*
13653596 AACCCCAGTCGGACTGAGGGTTGTGGCAGCAGGACCAGCAGCGGGATCGACAGCACACAAGGGGG
261 AACCCCAGTCAGACTGAGGGTTGTGGCAGCAGGACCAGCAGCGGGATCGACAGCACACAAGGGGG
13653661 ACCGGGTTGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGG
326 ACCGGGTTGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGG
* * * ** *
13653704 CCTCTCTGACCGGCTGAGCGCCCACACACTTGTTTCATGGGTTGACTTAGGCGTACAGAGTTCAT
1 CCTCTCCGACCAGCTGAGCACCCACACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCAT
* * *
13653769 CTCCA-GTCTAAGCATACGGAGTTCATT-CCAATCTAAGATCGGACCGGACTGAGGGTTGCGGCA
66 -TCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCA
** * * * * *
13653832 GCAAGATCGGTACCATGC-AGGGGGGACCGGGCCGGTCCCTGACTTGCGCATTCTACCTCTTCAA
130 GCAAGATCGACACCACGCAAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTACCTCTCCAA
** * * ** * * * * ** *
13653896 TTGGCTGCGTGCCCTCACGCCCGTTTCGTGGGTTGGCTTAGTCATAGGGAGTTCATTCCTTGTCT
195 CCGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
* *
13653961 AAGCCCCA-TCCAGA-TCGAGGGTTGTGGCAGCAGGACCGGCAGC
260 AAACCCCAGT-CAGACT-GAGGGTTGTGGCAGCAGGACCAGCAGC
13654004 ACGCAGGGGG
Statistics
Matches: 249, Mismatches: 48, Indels: 8
0.82 0.16 0.03
Matches are distributed among these distances:
365 2 0.01
366 123 0.49
367 44 0.18
368 76 0.31
369 4 0.02
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (368 bp):
CCTCTCCGACCAGCTGAGCACCCACACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCAT
TCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
CAAGATCGACACCACGCAAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTACCTCTCCAAC
CGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
AACCCCAGTCAGACTGAGGGTTGTGGCAGCAGGACCAGCAGCGGGATCGACAGCACACAAGGGGG
ACCGGGTTGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGG
Found at i:13654088 original size:158 final size:159
Alignment explanation
Indices: 13653819--13655230 Score: 1093
Period size: 158 Copynumber: 8.9 Consensus size: 159
13653809 GGACCGGACT
* * ** * * * * *
13653819 GAGGGTTGCGGCAGCAAGATCGGTACCATGCAGGGGGGACCGGGCCGGTCCCTGACTTGCGCATT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATT
* * **** * * * * * * *
13653884 CTACCTCTTCAATTGGCTGC-GTGCCCTCACGCCCGTTTCGTGGGTTGGCTTAGTCATAGGGAGT
66 ATGCCTCTTCGGCCGGCT-CAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
*
13653948 TCATTCCTTGTCTAAGCCCCA-TCCAGATC
130 TCATTCCTTGTCTAAGCCCCAGTCCGGATC
* * * * *
13653977 GAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGGGGGGACCGTGCCGATCCCTGGCTTGTGCATT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATT
* * * * **
13654042 ATGCCTCTTCGGCCAGCTCAGCACCTGCACGCTCATTTTGTGGGTTGACTTATACATACGGAGTT
66 ATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
* ** * *
13654107 CATT-CTCAGTCTAAG-ATCAGACCGGACC
131 CATTCCT-TGTCTAAGCCCCAGTCCGGATC
** * * *
13654135 GAGGGTTAAGGCAGTAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCTGGCTTGCGCATT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATT
* * * * * * * * * *
13654200 CTGCCTCTTCGACCGACTGAGCACCCGCACGCCCGTTTTGGTGGGTTGGCTTAGGCATAGGGAGT
66 ATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTC-ATTTCGTGGGTTGACTTAGGCATACGGAGT
* * *
13654265 TTATTCCATGTTTAAGCCCCAGT-CGGATC
130 TCATTCCTTGTCTAAGCCCCAGTCCGGATC
* * * * *
13654294 GAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGAATCGGGCCGATCCCCGGCTTGTGCAT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGATCGGGCCGATCCCTGGCTTGCGCAT
** * ** * **
13654359 TATGCCTCTTCGGCTAGCTCAGCGCCCGCACACTTGTTTCGTGGGTTGACTTATGCATACAAAGT
65 TATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
** * *
13654424 TCATT--TTCGATCTAAG-ATCAGAT-TGGATT
130 TCATTCCTT-G-TCTAAGCCCCAG-TCCGGATC
* * * * * *
13654453 GAGGGTTATGGCAGTAGGATCAACAGCACGCAAGGGGGATCGGGCCGATCCCCGACTTGCGCATT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATT
* * * * * * * * * *
13654518 CTGCCTCTTCGGTCGGTTGAGCACCTGCACGC-CTATTTCATTGGTTGGCTTAGGCATAGGGAGT
66 ATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTC-ATTTCGTGGGTTGACTTAGGCATACGGAGT
* *
13654582 TCTTTCCATGTCTAAGCCCCAGT-CGGATC
130 TCATTCCTTGTCTAAGCCCCAGTCCGGATC
* * * * * ** *
13654611 GAGGGTTGTGGCAACGGGACCGATAGCACGCAGAGGGGGATCGGGTCGATCCCCAGCTTGTGCAT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGATCGGGCCGATCCCTGGCTTGCGCAT
* * * *
13654676 TATGCCTCTTCGACCGGCTCAGTGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGT
65 TATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
** **** * *
13654741 TCATTCCCAGTCTAAG-ATTGGACCAGATC
130 TCATTCCTTGTCTAAGCCCCAGTCCGGATC
** * * * *
13654770 GAGGGTTACGGTAGCAGGATCGACAGCACGCA-GAGGGACCGGGCCGAT-CCTCGGCTTACGCAT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCT-GGCTTGCGCAT
* * * * * * * *
13654833 TCTGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCGA-TTCATGGGTTGGCTTAGGCATAGGGAG
65 TATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTC-ATTTCGTGGGTTGACTTAGGCATACGGAG
* * * * *
13654897 TTCATTCCATGTATAAGCCCTAG-CTGTATC
129 TTCATTCCTTGTCTAAGCCCCAGTCCGGATC
* * * ** ** *
13654927 GATGGTTGTGGCAGCGGGATC-AGCAGCATGCAGAGGCAGATCAAGCCGATCCC-GGCTTGCGTA
1 GAGGGTTGTGGCAGCAGGATCGA-CAGCACGCAG-GGGGGATCGGGCCGATCCCTGGCTTGCGCA
* * * *
13654990 TTATGCCTCTTCGGCCGGTTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTAATGCATACGGAG
64 TTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
* ** *
13655055 TTCATTCCTAGTCTAAG-ATCAGACCGGA-C
129 TTCATTCCTTGTCTAAGCCCCAGTCCGGATC
* * *
13655084 TGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTACGCAT
1 -GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCAT
* * ** * * * * *
13655149 TCTACCT-TTCCGATCGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAA
65 TATGCCTCTT-CGGCCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
* *
13655213 TTCATTCCATGTCAAAGC
129 TTCATTCCTTGTCTAAGC
13655231 ATACGGAGTT
Statistics
Matches: 972, Mismatches: 251, Indels: 61
0.76 0.20 0.05
Matches are distributed among these distances:
156 3 0.00
157 143 0.15
158 500 0.51
159 266 0.27
160 60 0.06
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATT
ATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCTTGTCTAAGCCCCAGTCCGGATC
Found at i:13654979 original size:316 final size:315
Alignment explanation
Indices: 13653780--13655230 Score: 1635
Period size: 316 Copynumber: 4.6 Consensus size: 315
13653770 TCCAGTCTAA
* * * * **
13653780 GCATACGGAGTTCATT-CCAATCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAAGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTACGGCAGCAGGATCGACA
* * * * * * * *
13653844 CCATGCAGGGGGGACCGGGCCGGTCCCTGACTTGCGCATTCTACCTCTTCAATTGGCTGCGTGCC
65 GCACGCA-GGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGTGCC
* * * * * *
13653909 CTCACGCCCGTTTCGTGGGTTGGCTTAGTCATAGGGAGTTCATTCCTTGTCTAAGCCCCA-TCCA
129 CGCACGCCCGATTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT-CG
* * * * *
13653973 GATCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAG-GGGGGACCGTGCCGATCCCTGGCTTGT
193 GATCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGT
* * *
13654037 GCATTATGCCTCTTCGGCCAGCTCAGCACCTGCACGCTCATTTTGTGGGTTGACTTAT
258 GCATTATGCCTCTTCGGCCAGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAT
* * * *
13654095 ACATACGGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTAAGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTACGGCAGCAGGATCGACA
* * **
13654160 GCACGCAAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGACTGAGCACC
65 GCACGC-AGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGTGCC
* ** * *
13654225 CGCACGCCCGTTTTGGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTTTAAGCCCCAGTCG
129 CGCACGCCCG-ATTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
*
13654290 GATCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGAATCGGGCCGATCCCCGGCTTGT
193 GATCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGT
* * **
13654355 GCATTATGCCTCTTCGGCTAGCTCAGCGCCCGCACACTTGTTTCGTGGGTTGACTTAT
258 GCATTATGCCTCTTCGGCCAGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAT
** ** ** * * * *
13654413 GCATACAAAGTTCATTTTC-GATCTAAGATCAGATTGGATTGAGGGTTATGGCAGTAGGATCAAC
1 GCATACGGAGTTCATTCCCAG-TCTAAGATCAGACCGGA-CGAGGGTTACGGCAGCAGGATCGAC
* * * * * **
13654477 AGCACGCAAGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGTTGAGCAC
64 AGCACGC-AGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGTGC
* * * *
13654542 CTGCACG-CCTATTTCATTGGTTGGCTTAGGCATAGGGAGTTCTTTCCATGTCTAAGCCCCAGTC
128 CCGCACGCCCGA-TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * ** * *
13654606 GGATCGAGGGTTGTGGCAACGGGACCGATAGCACGCAGAGGGGGATCGGGTCGATCCCCAGCTTG
192 GGATCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTG
* * * * *
13654671 TGCATTATGCCTCTTCGACCGGCTCAGTGCCTGCACGCTCATTTCGTGGGTTGACTTAG
257 TGCATTATGCCTCTTCGGCCAGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAT
* ** * *
13654730 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTACGGCAGCAGGATCGACA
* * * *
13654795 GCACGCAGAGGGACCGGGCCGAT-CCTCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGTGCC
65 GCACGCAGGGGGACCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGTGCC
* * *
13654859 CGCACGCTCGATTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCCTAG-CTG
129 CGCACGCCCGATTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-G
* * * * ** ** *
13654923 TATCGATGGTTGTGGCAGCGGGATCAGCAGCATGCAGAGGCAGATCAAGCCGAT-CCCGGCTTGC
193 GATCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGT
* * * * *
13654987 GTATTATGCCTCTTCGGCCGGTTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTAAT
258 GCATTATGCCTCTTCGGCCAGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAT
* ** *
13655045 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTACGGCAGCAGGATCGACA
* * * *
13655110 GCACGCAGGGGGGATCGGGTCGATCCCTGGCTTACGCATTCTACCT-TTCCGATCGGCTGAGTGC
65 GCACGCA-GGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTT-CGATCGGCTGAGTGC
* * * *
13655174 CCGCACGCTC-ATTTCATGGGTTGGCTTAGGCATACGGAATTCATTCCATGTCAAAGC
128 CCGCACGCCCGA-TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
13655231 ATACGGAGTT
Statistics
Matches: 966, Mismatches: 153, Indels: 33
0.84 0.13 0.03
Matches are distributed among these distances:
314 1 0.00
315 143 0.15
316 329 0.34
317 301 0.31
318 192 0.20
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (315 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAGGGTTACGGCAGCAGGATCGACAG
CACGCAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGTGCCCG
CACGCCCGATTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAT
CGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGTGCA
TTATGCCTCTTCGGCCAGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAT
Found at i:13655965 original size:26 final size:26
Alignment explanation
Indices: 13655929--13655979 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13655919 TGACTTAGGT
13655929 ATACGGAGTTCA-TCTCCAATCTAAGC
1 ATACGGAGTTCATTC-CCAATCTAAGC
13655955 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
13655980 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGC
Found at i:13656602 original size:184 final size:183
Alignment explanation
Indices: 13656268--13656636 Score: 483
Period size: 184 Copynumber: 2.0 Consensus size: 183
13656258 GTTGACATAG
* * * *
13656268 GCATATAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGTTGCGATAGCAGGATCGATAT
1 GCATATAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGTTGCGACAACAGGATCGACAG
* * * *
13656333 CACGTAGGGGGGACCGGGCCGATCACCGGCTTGCGCATTCTACCTCTCCGATCGACTGAGCACCC
66 CACCTAGGGGGGACCGAGCCGATCACCGGCTCGCGCATTCTACCTCTCCGACCGACTGAGCACCC
* * * *
13656398 ATACGCTCGTTTCATGGGTTGGCTTAGGCGTACGGAGTTCATTCCACGTCTAA
131 ACACGCTCATTCCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAA
* * * *
13656451 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGGCAACAGGATCGACA
1 GCATATAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GGTTGCGACAACAGGATCGACA
* * *
13656516 GCACACT-GGGGGGATCGAGCCGATC-CTCGGCTCGCGCATTCTGCCTCTCCGGCCTG-CTGAGC
65 GCAC-CTAGGGGGGACCGAGCCGATCAC-CGGCTCGCGCATTCTACCTCTCCGACC-GACTGAGC
* * *
13656578 GCCCACACGCTCATTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
127 ACCCACACGCTCATTCCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAA
13656635 GC
1 GC
13656637 CCCAACCGGA
Statistics
Matches: 160, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
183 40 0.25
184 118 0.74
185 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (183 bp):
GCATATAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGTTGCGACAACAGGATCGACAG
CACCTAGGGGGGACCGAGCCGATCACCGGCTCGCGCATTCTACCTCTCCGACCGACTGAGCACCC
ACACGCTCATTCCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAA
Found at i:13656822 original size:26 final size:26
Alignment explanation
Indices: 13656793--13656845 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13656783 GTTGACTTAG
* *
13656793 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13656819 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13656845 G
1 G
13656846 ATTAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13658393 original size:26 final size:26
Alignment explanation
Indices: 13658344--13658396 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13658334 GTTGGCTTAG
*
13658344 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
13658370 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
13658396 G
1 G
13658397 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:13658568 original size:197 final size:197
Alignment explanation
Indices: 13658233--13658596 Score: 457
Period size: 197 Copynumber: 1.8 Consensus size: 197
13658223 CCGAAGGTTG
* *
13658233 CAATAGCAGGATCGACAGCATGTAGGGGGGGATCGGGCTGATCCCCGGCTTACGCATTCTACCAC
1 CAATAGCAGGATCGACAGCACGTAGGGGGGGATCGGGCTGATCCCCAGCTTACGCATTCTACCAC
* * * * * * * * **
13658298 TCCGATCGGTTGAGCGCCCAGATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTGCA
66 TCAGATCGGCTGAACGCCCAGACGCTCATTTCATGGGATGACATAGGCATACAGAGTTCATCCCA
*
13658363 TGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAACAGCAGG
131 TGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAACAGCAGG
13658428 AC
196 AC
* * * ** * *
13658430 CAATAGCAGGATCGATAGCACGTAGGTGGGGATCGAG-TCGATCCCCAGCTTGTGCATTCTGCCT
1 CAATAGCAGGATCGACAGCACGTAGGGGGGGATCGGGCT-GATCCCCAGCTTACGCATTCTACCA
* *
13658494 CTCTAG-TCGGCTGAACGCCC-GCACGCTCGTTTCGTGGGATGACATAGGCATACAGAGTTCATC
65 CTC-AGATCGGCTGAACGCCCAG-ACGCTCATTTCATGGGATGACATAGGCATACAGAGTTCAT-
*
13658557 CCCA-GTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATC
127 CCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
13658597 AAACTGGATC
Statistics
Matches: 140, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
196 2 0.01
197 135 0.96
198 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.23
Consensus pattern (197 bp):
CAATAGCAGGATCGACAGCACGTAGGGGGGGATCGGGCTGATCCCCAGCTTACGCATTCTACCAC
TCAGATCGGCTGAACGCCCAGACGCTCATTTCATGGGATGACATAGGCATACAGAGTTCATCCCA
TGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAACAGCAGG
AC
Found at i:13658577 original size:26 final size:26
Alignment explanation
Indices: 13658541--13658593 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13658531 GATGACATAG
13658541 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13658567 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13658593 G
1 G
13658594 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13659641 original size:26 final size:26
Alignment explanation
Indices: 13659591--13659643 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13659581 GTTGACTTAG
* *
13659591 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCGAATCTAA
* *
13659617 GCATATGGAGTTCATTCCGAATCTAA
1 GCATACGGAGTTCATCCCGAATCTAA
13659643 G
1 G
13659644 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCGAATCTAA
Found at i:13661359 original size:26 final size:26
Alignment explanation
Indices: 13661323--13661375 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13661313 GTTGACGTAG
13661323 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13661349 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13661375 G
1 G
13661376 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13661676 original size:26 final size:26
Alignment explanation
Indices: 13661640--13661691 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13661630 TTGACTTAGA
*
13661640 CATACGAAGTTCATCCCCAGTCTAAG
1 CATACAAAGTTCATCCCCAGTCTAAG
*
13661666 CATACAAAGTTCATTCCCAGTCTAAG
1 CATACAAAGTTCATCCCCAGTCTAAG
13661692 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.25
Consensus pattern (26 bp):
CATACAAAGTTCATCCCCAGTCTAAG
Found at i:13662182 original size:26 final size:26
Alignment explanation
Indices: 13662134--13662184 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13662124 TTGGCTTAGG
*
13662134 CATACGGAGTTCATTCGATGTCTAAT
1 CATACGGAGTTCATTCCATGTCTAAT
13662160 CATACGGAGTTCATTCCCA-GTCTAA
1 CATACGGAGTTCATT-CCATGTCTAA
13662185 GATTAGACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATGTCTAAT
Found at i:13663275 original size:26 final size:26
Alignment explanation
Indices: 13663223--13663275 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13663213 GTTAGCTTAG
* *
13663223 GCATACGAAGTTCATTCCATGTTTAA
1 GCATACAAAGTTCATTCCATGTCTAA
13663249 GCATACAAAGTTCATTCCCA-GTCTAA
1 GCATACAAAGTTCATT-CCATGTCTAA
13663275 G
1 G
13663276 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCATGTCTAA
Found at i:13663513 original size:142 final size:142
Alignment explanation
Indices: 13663257--13663528 Score: 490
Period size: 142 Copynumber: 1.9 Consensus size: 142
13663247 AAGCATACAA
13663257 AGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGC
1 AGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGC
* * * *
13663322 CTCTTTGTTTTCGCTCGGGGCACCATCGAAGGAGCATCACTGGAGAGCCTAACCGACGGCATTGG
66 CTCTTTGTTTTCGCCCGAGGCACCATCAAAGGAGCATCACTGGAGAGCCTAACCAACGGCATTGG
13663387 TGGTGTATACGG
131 TGGTGTATACGG
*
13663399 AGTTCATTCCTAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGC
1 AGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGC
*
13663464 CTCTTTGTTTTCGCCCGAGGCACCATCAAAGGAGCATCACTGGAGAGCCTAACCAATGGCATTGG
66 CTCTTTGTTTTCGCCCGAGGCACCATCAAAGGAGCATCACTGGAGAGCCTAACCAACGGCATTGG
13663529 GGGTTCCGGC
Statistics
Matches: 124, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
142 124 1.00
ACGTcount: A:0.19, C:0.24, G:0.29, T:0.27
Consensus pattern (142 bp):
AGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGC
CTCTTTGTTTTCGCCCGAGGCACCATCAAAGGAGCATCACTGGAGAGCCTAACCAACGGCATTGG
TGGTGTATACGG
Found at i:13669543 original size:26 final size:26
Alignment explanation
Indices: 13669507--13669585 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
13669497 GTTGACTTAG
* *
13669507 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
13669533 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
*
13669559 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
13669585 G
1 G
13669586 ATCGGACCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:13669879 original size:159 final size:160
Alignment explanation
Indices: 13669559--13670379 Score: 678
Period size: 159 Copynumber: 5.2 Consensus size: 160
13669549 CCTAGTCTAA
* * * * * *
13669559 GCATACAGAGTTCATTCC-TAGTCTAAG-ATCGGACCGGA-CTGAGGGTTGTGGCAGCAGGATCG
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAGATC-GAGGGTTGCGACAGCAGGATCG
* ** * * *
13669621 ACAG--CAC-GTAGGGGGATCAAGCCGATCCCTGGCTTGCGTATTCTGCCTCTCCGGCTGGCTGA
64 ACAGCACACAG-AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGA
*
13669683 GTC-CCCGCACG-TCCGTTTCATGGGTTGGCTTAG
128 G-CGCCCGCACGCT-CGTTTCGTGGGTTGGCTTAG
* * * * * * *
13669716 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGGATCGAGGGTTGTGGCAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGATCGAGGGTTGCGACAGCAGGATC-GA
* * * * * * * *
13669779 CAGCACGCAGAGTGGGACCGGGTCGATCCTCGGCTTGCTCATTATGCCTCTTCGGCTGGCTCAGA
65 CAGCACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGC
* * *
13669844 GCCCGGACGCTCGTTTCGTGGGTTGACTTAT
130 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
13669875 GCATACGGATTTCATTCCCA-GTCTAAG-ATCAGATCAGA-CTGAGGGTTGCGACAGCAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGATC-GAGGGTTGCGACAGCAGGATCG
* * *
13669937 ACAGCACACA-AGGGGGACCGGGTTGATCCCCGGCTTGCGCATTCTGTCTCTCCGG-TCGACTGA
64 ACAGCACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCT-GGCTGA
* * *
13670000 GCGCTCACACGC-CTGTTTTGTGGGTTGGCTTAG
128 GCGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * * * * * ** * *
13670033 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGAGTTATGGCAGC-GAGACTGG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGATCGAGGGTTGCGACAGCAG-GA-TCG
* * * * * ** * *
13670096 A-AGCATGA-AGAAGGGGACCGGGTCGATCCTCGACTTGCGCATTATGCCTCTTTGGCCGGCTCA
64 ACAGCA-CACAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGA
* * * *
13670159 GCGCCCGTACGCTCATTTCGTGGGTTGACTTAT
128 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
13670192 GCATACGGATTTCATTCCCA-GTCTAAG-ATCAGACCAGATTGAGGGTTGCGACAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGATCGAGGGTTGCGACAGCAGGATCGA
* * * * * * *
13670255 CAGCACATAGGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCGGCCTCTCCAGCCGGCTGAGC
65 CAGCACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGC
* * *
13670320 GCCTGCACGCTCGTTTCATGGGTTGGTTTAG
130 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
13670351 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
13670380 TACAGGGTTC
Statistics
Matches: 518, Mismatches: 115, Indels: 59
0.75 0.17 0.09
Matches are distributed among these distances:
156 1 0.00
157 57 0.11
158 125 0.24
159 323 0.62
160 12 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGATCGAGGGTTGCGACAGCAGGATCGAC
AGCACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13670143 original size:317 final size:315
Alignment explanation
Indices: 13669559--13670378 Score: 1108
Period size: 317 Copynumber: 2.6 Consensus size: 315
13669549 CCTAGTCTAA
* * * * * * *
13669559 GCATACAGAGTTCATTCCTAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGATTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGACA
** ** * * *
13669624 GCAC-GTAGGGGGATCAAGCCGATCCCTGGCTTGCGTATTCTGCCTCTCCGGCTGGCTGAGTCCC
66 GCACACAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGC-GGCTGAG-CGC
13669688 CGCACGTCC-GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCG
129 CGCACG-CCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCG
* * * * * * *
13669752 GATCGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGTGGGACCGGGTCGATCCTCGGCTTGC
193 GACCGAGAGTTATGGCAGCGAGACTGGAAGCACGAAGAGTGGGACCGGGTCGATCCTCGACTTGC
* * *
13669817 TCATTATGCCTCTTCGGCTGGCTCAGAGCCCGGACGCTCGTTTCGTGGGTTGACTTAT
258 GCATTATGCCTCTTCGGCCGGCTCAGAGCCCGGACGCTCATTTCGTGGGTTGACTTAT
*
13669875 GCATACGGATTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGATTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGACA
* ** * *
13669940 GCACACAAGGGGGACCGGGTTGATCCCCGGCTTGCGCATTCTGTCTCTCCGGTCGACTGAGCGCT
66 GCACACAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG-CGGCTGAGCGC-
* ** **
13670005 CACACGCCTGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
129 CGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGG
*
13670070 ACCGAGAGTTATGGCAGCGAGACTGGAAGCATGAAGAAG-GGGACCGGGTCGATCCTCGACTTGC
194 ACCGAGAGTTATGGCAGCGAGACTGGAAGCACGAAG-AGTGGGACCGGGTCGATCCTCGACTTGC
* * *
13670134 GCATTATGCCTCTTTGGCCGGCTCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAT
258 GCATTATGCCTCTTCGGCCGGCTCAGAGCCCGGACGCTCATTTCGTGGGTTGACTTAT
*
13670192 GCATACGGATTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGATTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGACA
* * * *
13670257 GCACATAGGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCGGCCTCTCCAGCCGGCTGAGCGC
66 GCACACA-AGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC-GGCGGCTGAGCGC
* *
13670322 CTGCACG-CTCGTTTCATGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGC
129 C-GCACGCCT-GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
13670379 ATACAGGGTT
Statistics
Matches: 440, Mismatches: 55, Indels: 16
0.86 0.11 0.03
Matches are distributed among these distances:
316 65 0.15
317 277 0.63
318 97 0.22
319 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (315 bp):
GCATACGGATTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGACA
GCACACAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCGGCTGAGCGCCG
CACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGAC
CGAGAGTTATGGCAGCGAGACTGGAAGCACGAAGAGTGGGACCGGGTCGATCCTCGACTTGCGCA
TTATGCCTCTTCGGCCGGCTCAGAGCCCGGACGCTCATTTCGTGGGTTGACTTAT
Found at i:13670381 original size:26 final size:26
Alignment explanation
Indices: 13670351--13670403 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
13670341 GTTGGTTTAG
13670351 GCATAC-GGAGTTCATT-CCATGTCTAA
1 GCATACAGG-GTTCATTCCCA-GTCTAA
13670377 GCATACAGGGTTCATTCCCAGTCTAA
1 GCATACAGGGTTCATTCCCAGTCTAA
13670403 G
1 G
13670404 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGGGTTCATTCCCAGTCTAA
Found at i:13670493 original size:11 final size:11
Alignment explanation
Indices: 13670474--13670506 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
13670464 CTCGGGGCAT
13670474 CATCGTCGGAG
1 CATCGTCGGAG
*
13670485 CATCATCGGAG
1 CATCGTCGGAG
13670496 CATCGTCGGAG
1 CATCGTCGGAG
13670507 AGCCTAACAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:13671779 original size:26 final size:26
Alignment explanation
Indices: 13671743--13671795 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13671733 GTTGACTTAG
*
13671743 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
*
13671769 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
13671795 G
1 G
13671796 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAATCTAA
Found at i:13672090 original size:159 final size:158
Alignment explanation
Indices: 13671810--13672273 Score: 377
Period size: 159 Copynumber: 2.9 Consensus size: 158
13671800 GATCAGACTG
* * * *
13671810 AGGGTTGCGGCAGTTGGATCGGCAGCACGCAGGGGGGACCGGGTCGATCTTCGACTTGCGTATTC
1 AGGGTTGCGGCAGTGGGATCGGCAGCACGCAGGGGGGACCGGGTCAATCCTCGACTTGCGCATTC
* * * * *
13671875 TGCCTCTCCGGTCGGCTGAATGCCCGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTC
66 TGCCTCTCCGATCGGCTCAATGCCCGCACGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
13671940 ATT-CCATGTCTAAGCCCCAACTGGACCA
131 ATTCCCA-GTCTAAGCCCCAACTGGACCA
* *
13671968 AGGGTTGTGGCAGTGGGA-CTGGCAGCACGCAGAGGGGGATCGGGTCAATCCTC-AGCTTGCGCA
1 AGGGTTGCGGCAGTGGGATC-GGCAGCACGCAG-GGGGGACCGGGTCAATCCTCGA-CTTGCGCA
* * * ** * *
13672031 TTGTGCCTCTTCGATCGGTTCAACT-TTCGCACGCTCATTTCGTGGGTTGACTTATGCATACGGA
63 TTCTGCCTCTCCGATCGGCTCAA-TGCCCGCACGCCCATTTCGTGGGTTGACTTAGGCATACGGA
** ** *
13672095 GTTCATTCCCAGTCTAAG-ATCAGACCAGACCG
127 GTTCATTCCCAGTCTAAGCCCCA-ACTGGACCA
*** * * * * * **
13672127 AGGGTTGCGGCAGCAAGATCGACAGCACG-ATGGGGGGGACTGGGCCGATCC-CCAGCTTGCGGG
1 AGGGTTGCGGCAGTGGGATCGGCAGCACGCA--GGGGGGACCGGGTCAATCCTCGA-CTTGCGCA
* * * * * * *** * *
13672190 TTCTGCCTCTCAGATCGGTTGAGTTGCCTGCACACTTGTTTTGTGGGTTGGCTTAGGCATACGGA
63 TTCTGCCTCTCCGATCGGCTCA-ATGCCCGCACGCCCATTTCGTGGGTTGACTTAGGCATACGGA
13672255 GTTCATT-CCATGTCTAAGC
127 GTTCATTCCCA-GTCTAAGC
13672274 ATACGGAGTT
Statistics
Matches: 244, Mismatches: 48, Indels: 25
0.77 0.15 0.08
Matches are distributed among these distances:
157 1 0.00
158 33 0.14
159 160 0.66
160 50 0.20
ACGTcount: A:0.18, C:0.25, G:0.32, T:0.25
Consensus pattern (158 bp):
AGGGTTGCGGCAGTGGGATCGGCAGCACGCAGGGGGGACCGGGTCAATCCTCGACTTGCGCATTC
TGCCTCTCCGATCGGCTCAATGCCCGCACGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCCCCAACTGGACCA
Found at i:13672282 original size:26 final size:26
Alignment explanation
Indices: 13672246--13672298 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13672236 GTTGGCTTAG
13672246 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13672272 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13672298 G
1 G
13672299 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13672673 original size:26 final size:26
Alignment explanation
Indices: 13672644--13672696 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13672634 GTTGAGTTAG
* *
13672644 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAATCTAA
*
13672670 GCATACGGAGCTCATTCCCAATCTAA
1 GCATACGGAGCTCATCCCCAATCTAA
13672696 G
1 G
13672697 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAATCTAA
Found at i:13678856 original size:26 final size:26
Alignment explanation
Indices: 13678827--13678879 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13678817 GTTGGCTTAG
13678827 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13678853 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13678879 G
1 G
13678880 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13679443 original size:157 final size:159
Alignment explanation
Indices: 13679156--13679706 Score: 494
Period size: 158 Copynumber: 3.5 Consensus size: 159
13679146 TCTTCGGCCA
* * *
13679156 GCCTCTCCGGTCAGCTGAGCACCCGCACTCTCGTTTCATGGATTGGCTTAGACATAGGGAGTTCA
1 GCCTCTCCGATCAGCTGAGCACCCGCACGCTCATTTCATGGATTGGCTTAGACATAGGGAGTTCA
* * *
13679221 TTCCATGTCTAAGCCCCAACCAGACTGAGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGG
66 TTCCATGTCTAAACCCCAAACAGACTGAGGGTTGTGGCAGCGGGACCAGCAGCACACAGAGGGGG
* * *
13679286 ATTGGACCGATCCCCGGCTTG-GCATTCT
131 ACTGGACCGATCCCCGACTTGCGCATTAT
* * *
13679314 GCCTCTCCGATC-GACTGAGCACCCGCACGC-CATTTTATGGGTTGGCTTAGGCATAGGGAGTTC
1 GCCTCTCCGATCAG-CTGAGCACCCGCACGCTCATTTCATGGATTGGCTTAGACATAGGGAGTTC
**
13679377 ATTCCATGTCTAAACCCCAAAGGGACTGAGGGTTGTGGCAGCGGGACCAGCAGCACACAGAGGGG
65 ATTCCATGTCTAAACCCCAAACAGACTGAGGGTTGTGGCAGCGGGACCAGCAGCACACAGAGGGG
*
13679442 GACTGGGCCGATCCCCGACTTGCGCATTAT
130 GACTGGACCGATCCCCGACTTGCGCATTAT
* * * * ** * * * * * *
13679472 GCCTCTTCGGTCGGCTCAGTGCCCGCACGCTCATTTCCTGGGTTGACTATTG-CATACGAAGTTC
1 GCCTCTCCGATCAGCTGAGCACCCGCACGCTCATTTCATGGATTGGCT-TAGACATAGGGAGTTC
* * * * * ** * * **
13679536 ATTCCCA-GTCTAAGA--TCAGACCAGAATGAGAGTTGCGGCAGTAGGATC-GATAGCACGTAG-
65 ATT-CCATGTCTAA-ACCCCA-AACAGACTGAGGGTTGTGGCAGCGGGACCAG-CAGCACACAGA
* * **
13679596 GGGGGACCGGGCCGATCCCC-AGCTTGCGCATCCT
126 GGGGGACTGGACCGATCCCCGA-CTTGCGCATTAT
* ** * * * * * *
13679630 GCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCCTAGG-TTGGCTTAGGCATACGGAGTTC
1 GCCTCTCCGATCAGCTGAGCACCCGCACGCTCATTTCAT-GGATTGGCTTAGACATAGGGAGTTC
13679694 ATTCCATGTCTAA
65 ATTCCATGTCTAA
13679707 GCATACGGAG
Statistics
Matches: 329, Mismatches: 51, Indels: 26
0.81 0.13 0.06
Matches are distributed among these distances:
157 115 0.35
158 145 0.44
159 63 0.19
160 6 0.02
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (159 bp):
GCCTCTCCGATCAGCTGAGCACCCGCACGCTCATTTCATGGATTGGCTTAGACATAGGGAGTTCA
TTCCATGTCTAAACCCCAAACAGACTGAGGGTTGTGGCAGCGGGACCAGCAGCACACAGAGGGGG
ACTGGACCGATCCCCGACTTGCGCATTAT
Found at i:13679717 original size:26 final size:26
Alignment explanation
Indices: 13679681--13679733 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13679671 GTTGGCTTAG
13679681 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13679707 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13679733 G
1 G
13679734 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13680929 original size:159 final size:158
Alignment explanation
Indices: 13680480--13680932 Score: 387
Period size: 159 Copynumber: 2.9 Consensus size: 158
13680470 GGGTTGCGGT
* * * *
13680480 AGCAGGATCGACAGCACGCA-GGAGGGATCGGGTCGATCCCC-GACTTGCGCATTCTACCTCTCC
1 AGCAGGATCGACAGCACGCAGGGGGGGACCGGCT-GATCCCCAG-CTTGCGCATTCTGCCTCTCC
* * *
13680543 GGTCGGCTGATCGCCCGCACGC-CTGTTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATG
64 GGTCGGCTGAGCGCCCGTACGCTC-GTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATG
* * * * ***
13680607 TTTAAGCCCCAGTCAGACCGAGGGTTGTGGC
128 TCTAAGCACCAGCCAAACCGAGGGTTACAGC
* * * ** * * * * * * **
13680638 AGCGGGACCGGCAGCACATAGAGGGGGACCGGGTTGATCCTCAGCTTGCGTATTATGCCTTTTTG
1 AGCAGGATCGACAGCACGCAGGGGGGGACC-GGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCG
** * * * * * * ** * * *
13680703 ACCAGCTCAGTGTCCGTACGCTCATTTCATGGGTTGATTTATGCATATGGAGTTCATTCCCA-AT
65 GTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATT-CCATGT
* *
13680767 CTAAG-ATCAGACCAAATCGAGGGTTACAGC
129 CTAAGCACCAG-CCAAACCGAGGGTTACAGC
*
13680797 AAG-AGGATCGACAGCACGCAGGGGGGGACCAGGCTGATCCCCAGCTTGCACATTCTGCCTCTCC
1 -AGCAGGATCGACAGCACGCAGGGGGGGACC-GGCTGATCCCCAGCTTGCGCATTCTGCCTCTCC
* *
13680861 GGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGT
64 GGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGT
13680926 CTAAGCA
129 CTAAGCA
13680933 TACAGAGTTC
Statistics
Matches: 217, Mismatches: 69, Indels: 16
0.72 0.23 0.05
Matches are distributed among these distances:
158 20 0.09
159 186 0.86
160 11 0.05
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
AGCAGGATCGACAGCACGCAGGGGGGGACCGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGG
TCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCT
AAGCACCAGCCAAACCGAGGGTTACAGC
Found at i:13680953 original size:26 final size:26
Alignment explanation
Indices: 13680904--13680956 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13680894 GTTGGCTTAG
* *
13680904 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
13680930 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
13680956 G
1 G
13680957 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:13681467 original size:26 final size:26
Alignment explanation
Indices: 13681429--13681482 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
13681419 TGGGTTGACT
*
13681429 TAGGGATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
* * *
13681455 TAGGCATATGGAGTTCATTCCTAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
13681481 TA
1 TA
13681483 AGATCAGACC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:13681938 original size:158 final size:157
Alignment explanation
Indices: 13681455--13681947 Score: 499
Period size: 158 Copynumber: 3.1 Consensus size: 157
13681445 ATCCCCAGTC
* * * *
13681455 TAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGAT-T
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCA-GATCT
* * * *
13681519 AGCAGCACGTAGGAGGGATCAGATCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAG
65 A-CAGCACGTAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAG
** * *
13681584 CATCTGCACGCCCGTTTCGTGGGTTGGCT
129 CGCCCGCACGCTCGTTTCGTGGGTTGGCT
* * ** ** * * *
13681613 TAGGCATAGGGAGTTCATT-ACATGTCTAAGCCCTA-ACCGGATCGAGGGTTATGGCAGCGGGAC
1 TAGGCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCGGATCGAGGGTTGCGACAGC-AGAT
** * ** * * *
13681676 CGGCAGCACGTAGAGGGGGATCGGGTCGATCCCTGACTTATGCATTATGCCTCTCCGGTCAGTTC
63 CTACAGCACGTAG-GGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTG
* * * * * *
13681741 AACGCCCGCACACTCATTTAGTCGGTTGACT
127 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* * *
13681772 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGATAGCTAGATCT
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGC-AGATCT
* * * * *
13681837 ACAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTTGGTTGAGC
65 ACAGCACGTAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGC
*
13681902 GCCCGCATGCTCGTTTCGTGGGTTGGCT
130 GCCCGCACGCTCGTTTCGTGGGTTGGCT
13681930 TAGGCATAC-GAGTTCATT
1 TAGGCATACGGAGTTCATT
13681948 TCGTGTCTAA
Statistics
Matches: 261, Mismatches: 67, Indels: 15
0.76 0.20 0.04
Matches are distributed among these distances:
157 10 0.04
158 129 0.49
159 120 0.46
160 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (157 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGATCTA
CAGCACGTAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCT
Found at i:13681981 original size:26 final size:25
Alignment explanation
Indices: 13681933--13681984 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
13681923 GTTGGCTTAG
* **
13681933 GCATACGAGTTCATTTCGTGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
13681958 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
13681984 G
1 G
13681985 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:13682630 original size:159 final size:159
Alignment explanation
Indices: 13682367--13682841 Score: 537
Period size: 159 Copynumber: 3.0 Consensus size: 159
13682357 AGTCTATGAT
* * * ** * *
13682367 CAGACCGGATCGAAGGTTGCGGCAGCAGGATCGGTAGCATGCAGGGGGGACCAGGCCGATCCCCG
1 CAGACCGAATCGAGGGTTGTGGCAGCAGGATCGACAGCATGTAGGGGGGACCGGGCCGATCCCCG
* ** * * *
13682432 GCTTATGCATTCTGCCTCTTCGACCGGCTGAGCATCCGCACGCCCGTTTCATTGGTTGGCTTAGG
66 GCTTACGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* *
13682497 CATAGGGAGTTCATTCCATGTCTAAGCCC
131 CATACGGAGTTCATTCCATGTCTAAGCAC
* *
13682526 CAG-CCGAATCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGACCGGGCCGATCCTC
1 CAGACCGAATCGAGGGTTGTGGCAGCAGGATCGACAGCATGTAG-GGGGGACCGGGCCGATCCCC
* * * * * * *
13682590 GGCTTACGCATTATGCCTCTTCGACCGGCTCAGTGCCCGCACGCTCATTACGTGGGTTGACTTAT
65 GGCTTACGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
13682655 GCAAATGGAGTTCATTCCCA-GTCTAAG-AT
130 GCATACGGAGTTCATT-CCATGTCTAAGCAC
* * * ** *
13682684 CAGACTGGATCAAGGGTTGTGGCTA-CAGGATCGACAGCATGTAGGGGGGATTGGGCCAATCCCC
1 CAGACCGAATCGAGGGTTGTGGC-AGCAGGATCGACAGCATGTAGGGGGGACCGGGCCGATCCCC
* * * * *
13682748 GGCTTGCACATTCTGCC-CCTCTGATCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTA
65 GGCTTACGCATTCTGCCTCTTC-GACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
13682812 GGCATACGGAGTTCATTCCATGTCTAAGCA
129 GGCATACGGAGTTCATTCCATGTCTAAGCA
13682842 TATGGAGTTC
Statistics
Matches: 261, Mismatches: 48, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
157 6 0.02
158 122 0.47
159 129 0.49
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
CAGACCGAATCGAGGGTTGTGGCAGCAGGATCGACAGCATGTAGGGGGGACCGGGCCGATCCCCG
GCTTACGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGCAC
Found at i:13682823 original size:158 final size:158
Alignment explanation
Indices: 13682338--13682839 Score: 548
Period size: 158 Copynumber: 3.2 Consensus size: 158
13682328 CCCAGTCTAA
* * * * *
13682338 GCATACAGAGTTCATTCTGA-GTCTATGATCAGACCGGATCGAA-GGTTGCGGCAGCAGGATCGG
1 GCATACGGAGTTCATTC-CATGTCTAAGATCAGACCGGATC-AAGGGTTGTGGCAGCAGGATCGA
* * * * *
13682401 TAGCATGCAGGGGGGACCAGGCCGATCCCCGGCTTATGCATTCTGCCTCTTCGACCGGCTGAGCA
64 CAGCATGTAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGACCGGCTGAGCG
* * * *
13682466 TCCGCACGCCCGTTTCATTGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * *
13682496 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGAATCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGATCAAGGGTTGTGGCAGCAGGATCGAC
* * * * *
13682560 AGCACGTAGAGGGGGACCGGGCCGATCCTCGGCTTACGCATTATGCCTCTTCGACCGGCTCAGTG
65 AGCATGTAG-GGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGACCGGCTGAGCG
* * * *
13682625 CCCGCACGCTCATTACGTGGGTTGACTTAT
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
13682655 GCAAATGGAGTTCATTCCCA-GTCTAAGATCAGACTGGATCAAGGGTTGTGGCTA-CAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGATCAAGGGTTGTGGC-AGCAGGATCGA
** * * * * *
13682718 CAGCATGTAGGGGGGATTGGGCCAATCCCCGGCTTGCACATTCTGCC-CCTCTGATCGGCTGAGC
64 CAGCATGTAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTC-GACCGGCTGAGC
*
13682782 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
13682813 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13682840 CATATGGAGT
Statistics
Matches: 281, Mismatches: 54, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
157 8 0.03
158 141 0.50
159 128 0.46
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGATCAAGGGTTGTGGCAGCAGGATCGACA
GCATGTAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGACCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13683582 original size:26 final size:26
Alignment explanation
Indices: 13683531--13683586 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
13683521 TGGGTTCATT
* *
13683531 TAAGCATACGGAGTTCATCCATAGTC
1 TAAGCAGACGGAGTTCATCCACAGTC
*
13683557 TAAGCAGATGGAGTTCATTCC-CAGTC
1 TAAGCAGACGGAGTTCA-TCCACAGTC
13683583 TAAG
1 TAAG
13683587 ATCAAATCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
TAAGCAGACGGAGTTCATCCACAGTC
Done.