Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 100 of 117
Found at i:17719417 original size:712 final size:716
Alignment explanation
Indices: 17718041--17719525 Score: 2128
Period size: 712 Copynumber: 2.1 Consensus size: 716
17718031 CCCAGTCTAA
* * * * * * *
17718041 GCATACGGAGTTCTTTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCACATGCTGGC
* * * * *
17718106 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCACTGAGGCACCATCGTCGGTGCATCGATGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGACGAAGA
* * * *
17718171 ACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTACGCACATGATGTG
131 ACCTAACCAACAGCATTCGGGTTCCGACGATC-GGGGGGCCGAGGGGGTGTACGCACATGATGTG
* *
17718236 CAATGGGTGCTAGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CAATGGGTGCTAGTACTTGGCCCTTATACTGACCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
17718301 ACCCCCTTTAATGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTTAAAGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
17718366 GGGGACACTTTTTTTGAAATGGTCACAAAATCTCGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 GCGGACACTTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
17718431 ATGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAGCA
390 ATACAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAGAA
** **
17718496 AAATTTTAAAAAATTTCAAACATCAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCATC
455 AAATTTTAAAAAATCCCAAACATCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATC
*
17718561 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
520 TTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
17718626 CATTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACGACCCTATCGATCCTCAGCTTA
585 CATTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACACTATCGATCCTCAGCTTA
* * * * *
17718691 TGCATCCTGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTT
650 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCACTCATTTCATCGGTTGGCTT
17718756 AG
715 AG
** * *
17718758 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTACGGCAGCACATGTTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCACATGCTGGC
* * *
17718823 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTACCGGGGCACCATCGTCGGAGCATC-ACCGAAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGA-CGAAG
* * *
17718887 AACCTGACCAACAGCATTCGGG-TCTCGACGATC-GGGGGCC-AGGGGGTGTGCTCACATGATGT
130 AACCTAACCAACAGCATTCGGGTTC-CGACGATCGGGGGGCCGAGGGGGTGTACGCACATGATGT
* * * * *
17718949 GCGATGGGTGCTGGTATTTGGCCCTTATACTGGCCCCC-ACTCCCTCATCAAACCTCGAGATCTC
194 GCAATGGGTGCTAGTACTTGGCCCTTATACTGACCCCCTA-TCCCTCATCAAACCTCGAGAACTC
* *
17719013 ACACTCCC-TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
258 ACACCCCCTTTAAAG-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
17719077 AATGCGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTTT
322 AATGCGGACACTTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGAGTTTTTAGCTGAATTTT
*
17719141 TTTGTACAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
387 TTTATACAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
* * * *
17719206 -AAAAATTTTAAACAATCCCGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
452 GAAAAATTTTAAAAAATCCC-AAACATCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGT
** * *
17719269 TGTCTTGCCATGAAACTTCACGTTAAAGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAA
516 CATCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
17719334 ATGGCATTGGCA-AGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACACTATCGATCCAT-
581 ATGGCATTGGCACA-CAAAAATATGAAGATGTACCTAAACCCACCTACCACACTATCGATCC-TC
* * * *
17719397 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGGCCACTCATTTCGTCGGT
644 AGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCACTCATTTCATCGGT
17719462 TGGCTTAG
709 TGGCTTAG
* *
17719470 GTATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCA
17719526 GGATCGTCAG
Statistics
Matches: 681, Mismatches: 80, Indels: 19
0.87 0.10 0.02
Matches are distributed among these distances:
711 1 0.00
712 277 0.41
713 120 0.18
714 139 0.20
715 7 0.01
716 3 0.00
717 134 0.20
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26
Consensus pattern (716 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCACATGCTGGC
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGACGAAGA
ACCTAACCAACAGCATTCGGGTTCCGACGATCGGGGGGCCGAGGGGGTGTACGCACATGATGTGC
AATGGGTGCTAGTACTTGGCCCTTATACTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTTAAAGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
CGGACACTTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
TACAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAGAAA
AATTTTAAAAAATCCCAAACATCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCT
TGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACACTATCGATCCTCAGCTTAC
GCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCACTCATTTCATCGGTTGGCTTA
G
Found at i:17719667 original size:26 final size:26
Alignment explanation
Indices: 17719631--17719683 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17719621 GTTAACTTAG
*
17719631 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
17719657 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
17719683 G
1 G
17719684 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:17721508 original size:867 final size:861
Alignment explanation
Indices: 17718726--17725495 Score: 8288
Period size: 864 Copynumber: 7.7 Consensus size: 861
17718716 AGTGCCTGCC
* * * * * *
17718726 CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCGGA
* * * * * **
17718791 CCGGACCAAGGGTTACGGCAGCACATGTTGGCCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTA
66 CCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG
* ** * *
17718856 CCGGGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCAACAGCATTCGGG-TCTCGACGATC
131 TCGGGGCACCATCGTC---G-------G-AGAACCTGACCGGCGGCATTGGGGTTC-CGACGATC
** * * * *
17718920 -GGGGGCCAGGGGG-TGTGCTCACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATACTGGC
184 GGGGGGCGGGGGGGCTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
17718983 CCCC-ACTCCCTCATCAAACCTCGAGATCTCACACTCCCTTAAAGAGCATTTGAGATTTTATAGG
249 CCCCTA-TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
17719047 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGCGGACACTTTTTTCAAATGGTCACAAAATCT
313 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
17719112 TGTATACTTCGAGTTTTTAGCTGAATTTTTTTGTACAAGCCAACAAAAATACAAGGATCACGTCT
378 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCT
* *
17719177 ACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAACAATCCCGAACCGTAAAAAGTTTC
443 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
* * *
17719242 AAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTTAAAGCTTAAGGGAC
508 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
17719307 CATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCAAGTAGAAATATGAAGATGTGCCTAAA
573 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * *
17719372 CCCACTTACCACACTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGC
638 CCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * *
17719437 CCGCCCGGCCACTC-ATTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCTAGTCTAAG-ATC
703 CCGCCC-GCCGCTCTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAAT-
** * * * *
17719500 AGACCGGACCAAGGGTTGCGGCAGCAGGATCGTCAGCACGTAGA-GGGGACGGGCGGACGCGAT-
766 AGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGAC---CAG-C-CGATC
* *
17719563 CCCGACTTGCGCATCCTC-CCCCTTTGGCCGACTGAG
826 CCCGACTTGCGCATCC-CGCCCCTCTGGCCGGCTGAG
* *
17719599 CGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAG-AT-C-
* *
17719664 GAGTTCATTCACAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGCACATGCTGGGCTCGAGA
63 G-G---------A--C------CGGA-C---C-GAGGGTTGCGGCAGCACATGCTGGGCTCGAGC
* * *
17719729 ATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGAACCTGACCGACGGCATTG
105 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGCGGCATTG
* * * * *
17719794 GGGTTCCGACGATCGGGGGGGCGAGAGGGG-TGTACGCACATCATGTGCAATAGGTGCTGGTACT
170 GGGTTCCGACGATC-GGGGGGCG-GGGGGGCTGTGCGCACATAATGTGCGATGGGTGCTGGTACT
* * * * *
17719858 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTACACCCCTTTTAAGGGTAT
233 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
17719923 TTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAA
298 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
17719988 ATGGTCACAAAATCTCGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAAT
363 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAAT
* * *
17720052 ACAAGGATCATGTCTACCTAGTTTGGGGGGCCAAAACTCCTTCCGAAAAAATTTTAAACAATCCC
428 ACAAGGATCACGTCTACCAAGTTT--GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* *
17720117 GAACCGTAAAAAGTTTCAAAAATCGTG-AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
491 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
17720181 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCACGTAGAAAT
556 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* *
17720246 ATGAAGATGTGCCTAAACCCACTTACCACACTATCGATCCATGGCTTGCGCATCCCGTCTCTCTG
621 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTG
* * * *
17720311 GCCGGCGTAGTGCCCGCCCTCCCGCCCGCTC-ATTTCGTCGGTTGGCTTAGGCATATGAAGTTCA
686 GCCGGCGTAGTGCCCGCCCGCCCG-CCGCTCTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* *
17720375 TTCCTAGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGGGG
750 TTCCTAGTCTAAGAAT-AGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGG
* * * ** *
17720439 GACCTGCCCGATCCCCGGCTTGCGTATCCAACCCCTCTGGCCGGTTGAG
814 GACCAG-CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * * *
17720488 CGCCCGAATGCTCGTTTCGTGGGTTGTCTTTGGCATACGGAGTTCATTTTCAGTCTAAGATCCGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCGGA
* * * *
17720553 TCGGACCGAGGGTTGTGGCAGCACACGTTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG
66 CCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG
* *
17720618 TCGGGGCACCATCGTCGGAGAACTTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGAGCTGGG
131 TCGGGGCACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GC-GGG
* * *
17720683 GGGGCTGTGCACACATAATGTGTGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCC
194 GGGGCTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
17720748 TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAG
259 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
17720813 TAGCCACTAAAGTGCCTAAAATGGGGACACTTTTTTCAAAT-GTCACAAAATCTTGTACACTTCG
324 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
17720877 GGTTTTTAGCTGAATGTTTTGGTACATGCCAACAAAAATACAAGGATCTCGTCTACCAAGTTTGG
389 AGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* *
17720942 GGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGA
454 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
* * *
17721007 AAAATAGAAAACGAGTCGTCTTGTCATGAAACCTCACGTGAAGGCTTAAGGGACCATTTTATGAA
519 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *
17721072 TTTACAAGCCATAAAAATTGCACTGAG-ATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
584 TTTACAAGCCATAAAAATGGCATTG-GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
17721136 ACCCTATCGATCCATGACTTGTGCATCCTGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGTCC
648 ACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CC
* *
17721201 GCTAACTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT-CTCAGTCTATGAATAGACCGG
712 GCT--C-TGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCT-AGTCTAAGAATAGACCGG
* *
17721265 ACTGAGGGTTACGGCAGCAGGATCGGCAGCATGCAGAGGGGGAGCCAGTCGATCCCCGACTTGCG
773 ACTGAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGA-CCAGCCGATCCCCGACTTGCG
* *
17721330 CATCTCGCCCCTCTGGCCGGTTGAG
837 CATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
17721355 CGCCAGCACGCTCGTTTCGTGGGTTGACTTTGGCATACAGAGTTAATTTCCAGTCCAAGATCGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCGGA
** * * * *
17721420 TAGGACCGAGTGTTGCGGCAGCACATGCTGGGCTCGGGCATCTGCTGGTGCCGTATTTTTCTTCG
66 CCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG
* *
17721485 TCGGGGCACCATCGTCGGAGAACTTGACCGGCGGCATTGGGGTTCCGATGATCGGGAGGGCCAGG
131 TCGGGGCACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGG-C-GG
* * * * * ** * * *
17721550 GGGGGCTATGCGGACATAATGTGTGATGGGTGGTGGTACATGGAACTCATATTGGCTCCCTATCT
193 GGGGGCTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
17721615 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTACTGCCA
258 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
17721680 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
323 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* ** *
17721745 GAGTTTTTAGCTGAATATTTTTGTGTATGCCAACAAAAATACAAGGATCACGTCTACCAAGTATG
388 GAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
** ** *
17721810 GGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAATCTTGAACC-------G--T-AAAAATCGTG
453 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
*
17721865 AAAAATAGAAAACGAGTCGTCGTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
518 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
17721930 ATTGACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACC
583 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
17721995 ATCCTATCGATCTACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CCG
648 ACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCG
* * * *** *
17722057 CTC-GTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCACTCTAAGACCGGACCAGACTGA
713 CTCTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAATAGACCGGACTGA
* * * * * * *
17722121 GGGTTTACGGCAACAGGATCAGG-AACACGTAGAGGGGGACCCAGCCGAT-CCCTAGCTTACGCA
778 GGG-TTGCGGCAGCAGGATC-GGCAGCATGCAGAGGGGGA-CCAGCCGATCCCCGA-CTTGCGCA
*
17722184 TCCCGCCCCTCTGGCAGGCTGAG
839 TCCCGCCCCTCTGGCCGGCTGAG
* * * * * * * * * *
17722207 TGCCCGAACGTTCATTTCGTGGGTTGGCTTGGGCAAACGAAGTTCA-TTCTCAATCTAAGATCAG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTC-CAGTCTAAGATCGG
* * * ** * *
17722271 ACCAGACCAAAGGTTGCGATAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGCATTTATCTTC
65 ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTC
*
17722336 GTCGGGGCACCATCGTCGGAGCATCGCCAGAGTATTGCCGGAGAAGCTGACTGGCGGCATTGGGG
130 GTCGGGGCACCATCGTC---G----G--AGA--A----C-------CTGACCGGCGGCATTGGGG
* * * * * ** *
17722401 TTCCGATGATCGGAGCGGCTGGGGGGGGTGTACGCACATGATGTGTAATGGGTGATGGTACTTGG
173 TTCCGACGATCGG-GGGGC-GGGGGGGCTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGG
* *
17722466 CCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCGTCTG
236 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
17722530 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAATGGGGACACTTTTTTCAAATG
301 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
17722595 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAAAAAAAATACA
366 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACA
* * * * *
17722660 AGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTCCCGAAAAAATTTTAAAAAATCTCAAACC
431 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
* * * *
17722725 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCTTGCCATGAAGCTTCTCATGAA
496 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
17722790 GGCTTAAGGTACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCATGCAGAAATATGAA
561 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* * * * *
17722855 GATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCGTCTCTCTTGTCTG
626 GATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * *
17722919 TGTAGTACACGCCCACCCGTCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
691 CGTAGTGCCCGCCCGCCCG-CCG-CT-CT-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * * *
17722984 CCTAGTCTAAG-ATCAGATCAGA-TCGAGGGTTGTGGCAGCAGGATTGGTAGCACGTAGAGTGGG
752 CCTAGTCTAAGAAT-AGACCGGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGG
* * * * * *
17723047 ATCC-GACAGATCCTCGGCTTGCGCATCCCGCCCGTCTGGCCAGCAGAG
815 A-CCAG-CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
17723095 CGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGAAGTTCATCCCCAAGCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG--G----------AG-T-----T-C-
* * * * * *
17723160 AAATTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCAGTAGCACATGCTGGGCTCGGGC
46 --A-T--TT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGC
* * * * *
17723225 ATGTCCTGGTGTCGTATTTTTCTTCGTCGAGGCACCATCATCGGAGCATTACCGGAGAACCTGAT
105 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-C--CATC---G---T--CGGAGAACCTGAC
* * * * * *
17723290 CGGAGGAATTGGGGTTCTGACGATTGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGT
159 CGGCGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGGCTGTGCGCACATAATGTGCGATGGGT
*
17723354 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
224 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
17723419 AAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGAGACAC
289 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
17723484 TTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATATTTTTT-TGCATGC
354 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTACATGC
* * **
17723548 CAACAAAAAAACAAGTATCACGTCTACCAAGTTTGGGGCCAAAAAGCCTTCCGAAAAAATTTTAA
418 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *
17723613 AAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
483 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
17723678 AACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCAC
548 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
** * * *
17723743 ATAGAAATATGAAGATGTGCCTAAACCCACTTACCACACTATCGATCCATAGCTTGCGCATCCCG
613 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCG
* * * * *
17723808 TCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCACCTGCTC-ATTTCGTCAGTTGCCTTAGGCATAC
678 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC-GCTCTGTTTCGTCGGTTGGCTTAGGCATAC
* * * * *
17723872 GGAGTTCATTCCTAGTCTAAGATTAGATCGGA-TCGGGGGTTACGGTAGCAGGATCGGCAGCATG
742 GGAGTTCATTCCTAGTCTAAGAATAGACCGGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCATG
** * ** *
17723936 CAGAGGGGGACTTGCCCGTTCCCC-AGCTTGCGCATCCAACCCCTCTGGCCGGTTGAG
806 CAGAGGGGGACCAG-CCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
17723993 CGCCCGAACGCTCGTTTCGTGGGTTGTCTTTGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCGGA
* * * *
17724058 CCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCAAGTGCTGGTGCCGCATTTTTCTTTG
66 CCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG
*
17724123 TCGGGGCACCATCGTCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGAGCCGGG
131 TCGGGGCACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-G-CGGG
* **
17724188 GGGGCTGTGCGCACATAATGTGTGATGGGTGCTGGTACTTGGCCCACATATTGGCCCCCTATCCC
194 GGGGCTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
17724253 TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCTAG
259 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
17724318 TAGCCATTAAAGTGCCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
324 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
17724383 AGTTTTTAGCTGAATTTTTTGGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
389 AGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * *
17724448 GGTCAAAATTCCTTCCGAAAAAATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGA
454 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
*
17724513 AAAATAGAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAA
519 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
17724578 TTTACAAGCCATAAAAATGGCACTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
584 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* ** * *
17724643 CCCTATCGATCCACGGCTTGCGCATCTTGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCTGCCCA
649 CCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CC-
* * * * * * * *
17724708 CCAACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTATGAATAGATCGCAC
712 GC-TCT-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAATAGACCGGAC
* * ** * *
17724773 CGAGGGTTGC-GCTAGCAGGATCGGCAGCATACAGAGGCAGACCCGACCGATCCCC-AGTTTGCG
775 TGAGGGTTGCGGC-AGCAGGATCGGCAGCATGCAGAGGGGGACCAG-CCGATCCCCGA-CTTGCG
* *
17724836 CATCCCG-CCCTCTAGCCGGCTAAG
837 CATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
17724860 TGCCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATATCCAGTCCAAGATCGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCGGA
* * * * * *
17724925 CTGGACCGAGTGTTGCGGCAGCACATGCTGGGCTTGAGCATCTGCTGGTGCCGTATTTTTCTTCA
66 CCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * *
17724990 CCGGGGCACCATCATCGGAGAACTTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGTTGGGG
131 TCGGGGCACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CGGGG
*
17725055 GGGCTGTGCGGACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
195 GGGCTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
17725120 CATCAAACGTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
260 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
17725185 AGCCATTAAAGAGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAA
325 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
17725250 ATTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGG
390 GTTTTTAGCTGAA-TTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
** * * * * *
17725315 GGTGAAAACTCCTTCCAAAAAAATTTTTAAAAAATCCCAAACCGCAAAAGGTTTCAAAAATCGTG
454 GGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
* *
17725380 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATCA
518 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
17725445 ATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
583 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
17725496 AGTAGCCATT
Statistics
Matches: 5145, Mismatches: 590, Indels: 329
0.85 0.10 0.05
Matches are distributed among these distances:
851 60 0.01
852 179 0.03
853 3 0.00
855 6 0.00
857 1 0.00
858 1 0.00
859 181 0.04
860 1 0.00
861 42 0.01
862 69 0.01
863 336 0.07
864 658 0.13
865 4 0.00
866 202 0.04
867 539 0.10
868 420 0.08
869 123 0.02
871 1 0.00
872 302 0.06
873 102 0.02
874 34 0.01
875 2 0.00
876 3 0.00
877 1 0.00
879 2 0.00
880 1 0.00
881 25 0.00
882 152 0.03
883 1 0.00
885 5 0.00
886 5 0.00
887 5 0.00
888 126 0.02
889 143 0.03
890 51 0.01
891 461 0.09
892 71 0.01
894 4 0.00
895 1 0.00
896 2 0.00
897 1 0.00
898 151 0.03
899 65 0.01
900 48 0.01
901 397 0.08
902 37 0.01
903 25 0.00
906 1 0.00
907 1 0.00
910 2 0.00
914 78 0.02
915 2 0.00
916 3 0.00
917 4 0.00
918 1 0.00
920 1 0.00
922 1 0.00
923 1 0.00
925 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (861 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCGGA
CCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG
TCGGGGCACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCGGGGG
GGCTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
CTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCTC
TGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAATAGACCGGACTGAGGG
TTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCAGCCGATCCCCGACTTGCGCATCCCGCC
CCTCTGGCCGGCTGAG
Found at i:17726130 original size:26 final size:26
Alignment explanation
Indices: 17726091--17726143 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17726081 GTTGACTTAG
17726091 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
17726117 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
17726143 G
1 G
17726144 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:17727046 original size:26 final size:26
Alignment explanation
Indices: 17727010--17727062 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17727000 GTTGACTTAG
*
17727010 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17727036 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17727062 G
1 G
17727063 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17727676 original size:920 final size:919
Alignment explanation
Indices: 17725897--17727724 Score: 2689
Period size: 920 Copynumber: 2.0 Consensus size: 919
17725887 CCGGCATAAT
* *
17725897 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCATTGGCATACAGAGTTCATTCCCAGTCTAAGATG
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCATTGGCATACAGAGTTCATTCCCAATCTAAGATC
*
17725962 GGACCAGACCGAGGGTTGCAGCAGCAGGATAGGTAGCACGTAGAGGGGGACCCGACCGATCCCCG
66 GGACCAGACCGAGGGTTGCAGCAGCAGGATAGGTAGCACATAGAGGGGGACCCGACCGATCCCCG
* * *
17726027 CCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGG
131 CCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGG
* *
17726092 CATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACC
196 CATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACC
* * * * * ***
17726157 GAGGGTTGCGACAGCACATTCTGGGCTCTGGCATGTGCTGGTACGGCATTTTTCTTCACCGGGGC
261 AAGGGTTACGACAGCACATGCTAGGCTCGGGCATGTGCTGGTACAAAATTTTTCTTCACCGGGGC
* * * * *
17726222 ACCATCGCCGGAGCATCGCTGGAGAACCTGATCGGTGACGTTGGGGTTCCAGCGATTGAGGGGGT
326 ACCATCACCGGAGCATCGCTGGAGAACCTGACCGGTGACATTGGGGTTCCAGCGATCGAGGGGGG
*
17726287 CCGGGGGGTGTGCACACATGATGTGCGATGGGCGCTGATACTTGGCCCTTATATTGGCCCCCATC
391 CCGGGGGGTGTGCACACATGATGTGCGATAGGCGCTGATACTTGGCCCTTATATTGGCCCCCATC
* *
17726352 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
456 CCTCATCAAACCTCAAGAACGCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCC
17726417 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
521 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
17726482 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
586 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* *
17726547 GGGGCCAAAAATCCTTCCAAAAAAATTTAAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATTAT
651 GGGGCCAAAAATCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
* * *
17726612 GAAAAATAGAAGATGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTCTATG
716 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATG
* * ** * * * *
17726677 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATTTGCCTAAACCCACCTAT
781 AATTTACAAGCCATAAAAATGGCAGTGACACATAGAAATATGAAGATGTACCGAAACCCACCTAC
*
17726742 CACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT-GATGCCCACCCGCCCGT
846 CACCCTATCAATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAG-TGCCCACCCGCCCGT
17726806 CCGCCCGTCC
910 CCGCCCGTCC
*
17726816 GCCCGCCTGCCCGCTCGTTTCGTCGGTTGGC-TTAGGCATACAGAGTTCATTCCCAATCTAAGAT
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCATT-GGCATACAGAGTTCATTCCCAATCTAAGAT
* *** * ** * * * * *
17726880 CTGATTGGACTGAGGGTTGTGGCAGCAGGATCGGTAGCACATAGTGGGTGACCCGATCGATCCTC
65 CGGACCAGACCGAGGGTTGCAGCAGCAGGATAGGTAGCACATAGAGGGGGACCCGACCGATCCCC
* * * *
17726945 GGCTTGCGCATCCCGCCCCTCTAGCTGGTTGAGCACCTGCACGCTC-TTTTCGTGGGTTGACTTA
130 GCCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCACCCGCACGCTCGTTTT-GTGGGTTGACTTA
* *
17727009 GGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGA
194 GGCATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGA
* * **
17727074 CCAAGGGTTACGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCAAAATTTTTCTTCGTC-GG
259 CCAAGGGTTACGACAGCACATGCTAGGCTCGGGCATGTGCTGGTACAAAATTTTTCTTCACCGGG
* * * * *
17727138 GCACCATCACCGGAGCATCG-TCGGAGAACTTGACCTGGTGGCATTTGGGTTTCGGCGATCG-GG
324 GCACCATCACCGGAGCATCGCT-GGAGAACCTGACC-GGTGACATTGGGGTTCCAGCGATCGAGG
* * * *
17727201 GGGGCCGGGGGGGTGTGCGCACATGATGTGTGATAGGTGCTGGTACTTGGCCCTTATATTGGCCC
387 GGGGCC-GGGGGGTGTGCACACATGATGTGCGATAGGCGCTGATACTTGGCCCTTATATTGGCCC
* ** * *
17727266 CCTATCTCTCATCAAACCTTGAGAACGCACACGCCCTTAAAGAGAATTTGAGATTTTATAGGTTT
451 CC-ATCCCTCATCAAACCTCAAGAACGCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTT
* *
17727331 GCTGTCGGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
515 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
17727396 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGTATGCCAACAAAAATACAAGGATCACTTTTACC
580 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* * * * * **
17727461 AAGTTTTGGGCCAAAACTCTTTCCGAAAAAATTGT-AAAAAATCCCGAACCGTAAAAAGTTTTGA
645 AAGTTTGGGGCCAAAAATCCTTCCAAAAAAATT-TAAAAAAATCCCGAACCGCAAAAAGTTTCAA
* * *
17727525 AAATCGTGAGAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
709 AAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
17727590 TTGTATGAATTTACAAGCCATAAAAATGGCAGTGACACATAGAAATATGAAGATGTACCGAAACC
774 TTCTATGAATTTACAAGCCATAAAAATGGCAGTGACACATAGAAATATGAAGATGTACCGAAACC
* *
17727655 CACCTACCACCCTATCAATCCACGGCTTGCGCATCCCATCTCTCTGGTCGGCGTAGTGCCCGCCC
839 CACCTACCACCCTATCAATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCC
17727720 GCCCG
904 GCCCG
17727725 CTCGTTTCGT
Statistics
Matches: 807, Mismatches: 94, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
917 1 0.00
918 45 0.06
919 347 0.43
920 412 0.51
921 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (919 bp):
GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCATTGGCATACAGAGTTCATTCCCAATCTAAGATC
GGACCAGACCGAGGGTTGCAGCAGCAGGATAGGTAGCACATAGAGGGGGACCCGACCGATCCCCG
CCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGG
CATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACC
AAGGGTTACGACAGCACATGCTAGGCTCGGGCATGTGCTGGTACAAAATTTTTCTTCACCGGGGC
ACCATCACCGGAGCATCGCTGGAGAACCTGACCGGTGACATTGGGGTTCCAGCGATCGAGGGGGG
CCGGGGGGTGTGCACACATGATGTGCGATAGGCGCTGATACTTGGCCCTTATATTGGCCCCCATC
CCTCATCAAACCTCAAGAACGCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAAATCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATG
AATTTACAAGCCATAAAAATGGCAGTGACACATAGAAATATGAAGATGTACCGAAACCCACCTAC
CACCCTATCAATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGTC
CGCCCGTCC
Found at i:17728830 original size:725 final size:729
Alignment explanation
Indices: 17727747--17729123 Score: 2086
Period size: 725 Copynumber: 1.9 Consensus size: 729
17727737 GTTGGCTTAG
* *
17727747 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGCTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * * **
17727812 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCGCCATCGCTGGAGCATCTCTGGAGA
66 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCTCTGGAGA
* *
17727877 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCGCATGATATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-----G-GTGCGCACATGATATGCG
* *
17727942 ATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATTCCTCATCAAACCTCAAGAACTCACAC
190 ATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACATCAAGAACTCACAC
* * *
17728007 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTAGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
255 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTAGCTGCCAGTAGCCATTAAAGTGTCTAAAATAG
* *
17728072 GGACACTTTTTTCAAATCATCACAAAGTCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
320 GGACACTTTTTTCAAATCATCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTG
* * *** * *
17728137 CCTGCCAACAAAAATACAGGGATCACGTCTAGCAAGTTTGGGGCCAAAACTCCTT-TCGAAAAAA
385 CATGCCAAAAAAAATACAACCATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCT-GAAAAAA
* * * *
17728201 TTTTAAAAAATCCCGAACCATAAAAAGTTTAAAAAATGGTGGAAAATAGAAAACAAGTTGTCTTG
449 TTTTAAAAAATCACGAACCACAAAAAGTTTAAAAAATGGTGAAAAATAGAAAACAAGTCGTCTTG
* * *
17728266 -CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGACTTTACACGCCAT-AAAATGGCAT
514 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGACATAAAAATGGCAT
* *
17728329 TGGCACT-CAAAAATATGAGGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCC
579 TGGCA-TGCAAAAATATGAAGACGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCC
17728393 CATCTCGTTTCTCCGGCCGACCTAGCGCCCGCCCGCCCTCTCATTTTGTCGGTTGGCTTAGGCAT
643 CATCTCGTTTCTCCGGCCGACCTAGCGCCCGCCCGCCCTCTCATTTTGTCGGTTGGCTTAGGCAT
17728458 ACGAAGTTCATTCTCAGTCTAA
708 ACGAAGTTCATTCTCAGTCTAA
* ** *
17728480 GCATACGGTGCTCATTCCCAGTCTAAGATCAGATTGGACTGAGGGTTAC-AGCAGCACATGCTGG
1 GCATACGGAGCTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGA-CAGCACATGCTGG
*
17728544 GCTCGGGCATGTGCTGGTGTCATATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCATC-GGA
65 GCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCACCAGAGCATC-TCTGGA
* ** *
17728608 GAACCTGACCGACGGCATTGGGGTTCTGGTGATCGGGGGG-C-GTGCGCACATGATGTGCGATGG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGTGCGCACATGATATGCGATGG
** * **
17728671 GTGCTGGTACTTGGCCTTTATATTGTCCCCCTATCCCTCATCAAACATGGAGAACTCACACCCCC
194 GTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACATCAAGAACTCACACCCCC
*
17728736 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGAC
259 TTAAAGAGCATTTGAGATTTTACAGGTTAGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGAC
* *
17728801 ATTTTTTTCAAATTATCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATG
324 ACTTTTTTCAAATCATCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATG
17728866 CCAAAAAAAATACAACCATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTA
389 CCAAAAAAAATACAACCATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTA
* * * * *
17728931 AAAAATCACGAACCGCAAAAATTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
454 AAAAATCACGAACCACAAAAAGTTTAAAAAATGGTGAAAAATAGAAAACAAGTCGTCTTGCCATG
17728996 AAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGACATAAAAATGGCATTGGCA
519 AAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGACATAAAAATGGCATTGGCA
* * * *
17729061 TGTAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
584 TGCAAAAATATGAAGACGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCCCATC
17729124 CCGTCTCTTG
Statistics
Matches: 580, Mismatches: 58, Indels: 18
0.88 0.09 0.03
Matches are distributed among these distances:
725 306 0.53
726 52 0.09
727 70 0.12
732 2 0.00
733 148 0.26
734 2 0.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (729 bp):
GCATACGGAGCTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCTCTGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGTGCGCACATGATATGCGATGGGT
GCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACATCAAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTAGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACAC
TTTTTTCAAATCATCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AAAAAAAATACAACCATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAA
AAATCACGAACCACAAAAAGTTTAAAAAATGGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGACATAAAAATGGCATTGGCATG
CAAAAATATGAAGACGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCCCATCTCGT
TTCTCCGGCCGACCTAGCGCCCGCCCGCCCTCTCATTTTGTCGGTTGGCTTAGGCATACGAAGTT
CATTCTCAGTCTAA
Found at i:17729382 original size:26 final size:26
Alignment explanation
Indices: 17729346--17729398 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17729336 GTTGACTTAG
17729346 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17729372 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17729398 G
1 G
17729399 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17731146 original size:26 final size:26
Alignment explanation
Indices: 17731110--17731160 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17731100 TGACTTAGGC
*
17731110 ATACAGAGTTCATTCATAGTCTAAGT
1 ATACAGAGTTCATTCACAGTCTAAGT
* *
17731136 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCACAGTCTAAG
17731161 ATCGGATCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCACAGTCTAAGT
Found at i:17732035 original size:26 final size:26
Alignment explanation
Indices: 17732005--17732057 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17731995 GTTGACTGAG
*
17732005 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
*
17732031 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
17732057 G
1 G
17732058 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAATCTAA
Found at i:17732177 original size:894 final size:895
Alignment explanation
Indices: 17730279--17742609 Score: 14517
Period size: 903 Copynumber: 13.7 Consensus size: 895
17730269 AATTGAACCA
* * * **
17730279 AGGGTTATGGCAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCA
1 AGGGTTAGGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * * *
17730344 CCATTGTCGGAGCATCGCCGGAGAACCTAACTGGCGGCATTGGGGTTCCGACGATC-GGGAGGCC
66 CCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
* *
17730408 GGGAAAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTAT
131 GGG--GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
** ** * *
17730473 CCCTCATCAAACCTCTCGAACTCACACCCAGTTAAAAAGCATTTGAGATTTTACAGGTTTGCTAC
194 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
17730538 CAGTAGCCATTAAAGTGTCTAAAATAGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACT
259 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
17730603 TTGAATTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCCCGTCTACCAAGTT
324 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * **
17730668 TGGGGCCACAACTCCTTTCGAAAAAAA-TTTAAAAAATCTTGAACCGCAAAAGGTTTTGAAAATC
389 TGGGGCCAAAACTCC-TTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATC
*
17730732 GTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
453 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
17730797 TGAATTTACAAGCCATAAAAATGGCATCGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
518 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
17730862 ACCACCCTATCGATCCACGGCTTGCACATCCCGTTTCTCTGGCCGGCGTAGTG--C-CC-GCCCG
583 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCG
* * * *
17730923 CCCGCTCTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAAC
648 CCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAAC
* * * *** *** * *
17730988 CGAGGGTTGCGGCAGTAGGATC-GACAGCATGCAGAGGGGAGCTTGGCCGATCCTCGGCTTGTGC
713 CGAGGGTTGTGGTAGCAGGATCAG-CAGCACATAGAGGGGA-CCCAGCCGATCCCCGGCTTGCGC
* * * * *
17731052 ATCCCGCCCCTCTGGCCGACTGAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
776 ATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
** *
17731117 GTTCATTCATAGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAACG
841 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGG---G
*
17731175 AGGGTT-GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TCTGCCGGGG
1 AGGGTTAG-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GTCGGGG
* * *
17731238 CACCATCGTCGGAGCATCATCGGAGAACCTGACCGGTGGCATTGGGGTT-CTAGCGATCGGGGGG
64 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGG
* * * * *
17731302 GCTGGGGGGTGTGCACGCATGATGTGCGATGGGTGCTGGTACTTGGCCTTTTTATTGGCCCCCTA
128 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
17731367 TCCCTCATCAAACCAT-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
193 TCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
17731431 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAGAATCTTGTACA
257 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
17731496 CTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAGAAAAATACAAGGATCACATCTACCAAG
322 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
** * ** * * *
17731561 TTTGGACCCAAAACT-CTTTCAAAAAAATAATAAAAAATCCCAAACCGTAAAAAGTTTCAAAAAT
387 TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT
* * * *
17731625 CTTGAAAAATAGAAAACGTGTCATCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
452 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
17731690 ATGAATTTACAAGCCATAAAAATGGAAATGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
517 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * **
17731755 TACCACCCTATCGATCCA-GAGCTTACGCATCCCGTCTCTC-AGCCGACGTTGTGTCAACCTGCC
582 TACCACCCTATCGATCCACG-GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCC
*
17731818 CGCCCACTCCTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA
646 CGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA
* * * *
17731883 ACCAAGGGTTGTGGAAGTAGGATCAGCAGCACATAGAGTGGGACCCAGCCGATCCCCGGCTTGCA
711 ACCGAGGGTTGTGGTAGCAGGATCAGCAGCACATAGAG-GGGACCCAGCCGATCCCCGGCTTGCG
* * *
17731948 CATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTGAGGCATACGG
775 CATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * *
17732013 AGTTCATTCCCAATCTAAGCATACGGAGTTAATTCCCAGTCTAAGATTGGATCGGG
840 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGG
* *
17732069 AGGGTTAGGGCAGCACATGCTGTGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCA
1 AGGGTTAGGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
** * * * * * * * ** *
17732134 CCATCACCGGAGCATCGTTGTAGAACTTGACCGGCGACATTGGGGTTCGGATGATAGGGGCAGCT
66 CCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * * *
17732199 GGGGGGTGTGCGCACATGATGTGCAATTGGTGCTAGTACTTGGCCCTTATATTGGCCCCTTATCC
131 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * **
17732264 CTCATGAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTATCA
196 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
17732329 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
261 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * *
17732394 GAGTTTTTAGCTGAAATTTTTTATGCATGCCAAGAAAAATACAAGGATCATGCCTACCAAGTTTG
326 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * * * **
17732459 GGACCAAAAATTCTTTCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTTAAAATCGTG
391 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTG
* * *
17732524 AAAAATAGAAGATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGA
456 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
17732589 ATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATTTGCCTAAACCCACCTACC
521 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* ** *
17732654 ACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGTGTAGTGCCTGCCCT-CCCGCC
586 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCTGCCCGCC
* * * * * *
17732718 CGCTCGTTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGATCG
650 CACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCG
** * * ** ** *
17732783 AGGGTTGTGACAGCAAGAT-AGGCAGCACATAGAGGTGGACCCGGTAGATCTTCGGCTTGCGCTT
715 AGGGTTGTGGTAGCAGGATCA-GCAGCACATAGAGG-GGACCCAGCCGATCCCCGGCTTGCGCAT
* * ** * *
17732847 CCCGCCCCTCTGGCCAGCTGATAGCCCGCACGCACGTTTCGTGGGTTGACTTAGGTATACGGAGT
778 CCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * *
17732912 TCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCG
843 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-G--GG
*** * * * * * *
17732968 AGGGTTTCTGCAGCACATGCTAGGTTCAAGG-ATGTGCTGGTGCCGTATTTTTCTCCGTCGAGG-
1 AGGGTTAGGGCAGCACATGCTGGGCTC-GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * *
17733031 --CA----C----CATCGTCGGAGAACCTGACCGACGGCATTGGCGTTCC-AGTGATCGGGCGGG
65 ACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGG
* * **
17733085 TCGGGGGTGTGTGCGCACATGATGTGCAATGGGCACTGGTACTTGGCCCTTATATTGGCCCCCTA
129 CCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
** *
17733150 TCCCTCATCAAACCTCGCA-AACTCACATACCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCT
193 TCCCTCATCAAACCTCG-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
17733214 GCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGGCACAAAATCTTGTACA
257 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
17733279 CTTCGAGTTTTTAGCTGAAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAA
322 CTTCGAGTTTTTAGCTG-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * *
17733344 GTTTGGGCCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAA
386 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAA
* * * * * *
17733409 TCTTGAAAAATAAAAAACAAGTCATCTTGCCTTGAAACTTCACGTGAAGGCTTGAGGGACCATTG
451 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
17733474 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTATACCCAC
516 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * ** * * *
17733539 CTACCACCCTATCGATCGACGGCTTGCGTATCTCGTATCTCTGGGAGCCATAGTGCCCGCCCGTC
581 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTG-C
** * * * *
17733604 CC-CCCACTCGCTCTTTTCGTCGGTCAGCTTTGGCGTACGAAGTTCATTCCCAGTCTAAGATCGG
645 CCGCCCACTCG----TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* ** * * * * *
17733668 ACC-AGATCGAGGGTTAAGGTAGCAGGATCGGTAGCACACAAAGGGTGACCCAGCCGATCCCTGG
706 ACCGA-ACCGAGGGTTGTGGTAGCAGGATCAGCAGCACATAGAGGG-GACCCAGCCGATCCCCGG
* * * * * *
17733732 CTTGCGCATCCCACCCTTCTGGCCGGCTGAGCACCTGCACTCTCATTTCGTGAGTTGACTTAGGC
769 CTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * * *
17733797 ATACGTAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTGCCAGTCTAAGATTGGACTGGACCG
834 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-T---C-GGATC-
17733862 AGGG
893 -GGG
*
17733866 TTATGGTAGTAGGACCGAACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
1 --A-GG--GT-----------TA-GG--GC---AGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * * **
17733931 CGTATTTTTCTTCGCCGAGGCACCATCGTCAGAGCAGCGTCGGAGAACCTGACCGATGGCATTGG
44 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
* * * * * * *
17733996 GGTTTCGGCGATCGGAGGGGCCGGGGGGTGTGTGTACATGATGTGCGATGGGTGTTGGTGCTTGG
109 GGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
17734061 CCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
174 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
17734126 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
239 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
17734191 GTCACAAAATCTTGTACACTTCGAGTATTTAGCT-AAGTTTTTTTGTGCATGCCAAAAAAAATAC
304 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATAC
*
17734255 AAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAAC
368 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAAC
* *
17734320 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
433 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
17734385 AGGCTTAAGGGACCATTGTATGAGTTTATAAGCCAT-AAAATGGCATTGGCATGCAGAAATATGA
498 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * ** * *
17734449 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATGACGTCTTTCTAGCCG
563 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * *
17734514 ACATAGTGCCCGCCAGCCCGCCCGCACGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCAT
628 ACGTAGTGCCCGCCTGCCCG-CC-CA--CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
** * * * ** * * * *
17734579 TTTCAGTATAAGATCAGACTGGATAGAGGGTTGGGGTAGTAGCATCGGCAGCA-AGTAGAGGGGG
689 TCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGTAGCAGGATCAGCAGCACA-TAGA-GGGG
** * * *
17734643 ACCCAGTTGATCCTCGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAGCACCCGCACGCTCGTTT
752 ACCCAGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * * * *
17734708 CATGGGTTGACTTAGGCATACAGAGTTCATTCCAAGTCTAAGCATATGGAGTTCATTCCTAGTGT
817 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* *
17734773 AAGATCGGACCGAACTG
882 AAGATCGGATCG---GG
* * * ** *
17734790 AGGGTT-GCGGCAGCACATCCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGC
1 AGGGTTAG-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
** * * *
17734854 ACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGATTCCGATGATC-GGGGGGC
65 ACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
* * *
17734918 CGGGGGGTGTGTGCGCACATGATGTCCGATGGGTACTGGCACTTGGCCCTTATATTGGCCCCCTA
130 C-GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
17734983 TCCGTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
193 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
17735048 CCAGTAGCCATTAAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
258 CCAGTAGCCATT-AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
17735113 CTTCGAGTATTTAGCTGAAATTTTTTT-TGCATGCCAACAAAAATACAAGGATCATGTCTACCAA
322 CTTCGAGTTTTTAGCTG-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * *
17735177 GTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTAAAAA
386 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAA
*
17735242 TCATGAAAAATAGAAAAC-AGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
451 TCGTGAAAAATAGAAAACGA-GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
17735306 GTATGATTTTACAAGCCATAAAAATGGCATTGTCATGCAGAAATATGAAGACGT-CACTAAACCC
515 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC-CTAAACCC
**
17735370 ACCTACCACCCTATCGATCCACGGCTTGCGCATCTTGTCTCTCTGGCC-AGCGTAGTGCCCGCCC
579 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGT----GCCC
** * * *
17735434 GCCTGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTTCCAGTATAAGATC
639 GCCTGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * ** * * ** * ** *
17735499 AGACTGGATAGAGGGTTGCGGCAGCAGGATTGGCAGCA-AGTAGAGGGGGACCCGGTTGATCCTC
704 AGACCGAACCGAGGGTTGTGGTAGCAGGATCAGCAGCACA-TAGA-GGGGACCCAGCCGATCCCC
* *
17735563 GGCTTGCGCATCTCACCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
767 GGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
17735628 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTGTAAGATCGGACCGAAC
832 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCG---
*
17735693 TG
894 GG
* * * * ** *
17735695 AGGGTTACGGCAGCACATCCTGGG-TCCAGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGC
1 AGGGTTAGGGCAGCACATGCTGGGCT-CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * *
17735759 ACCATCGTCGGAGCATCGCCGGAGAACCTGACTGGCGGTATTGGGGTTCCGACGATC-AGGGGGC
65 ACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
* * * **
17735823 CAGGGGGGTGTGTGCGCACATTATGTCCGATGGGTACTGGTACTTGGCCCTTATATTGGTGCCCT
130 C--GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
17735888 ATCCGTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
192 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
17735953 GCCAGTAGCCATTAAAAGTGTTTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
257 GCCAGTAGCCATT-AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
17736018 ACTTCGAGTATTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
321 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * *
17736083 GTTTGGGGCCAAAAATCC-T--AAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTAAAAA
386 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAA
*
17736145 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTG
451 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
17736210 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
516 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
17736275 CTACCACCCTATCGATCCACGGCTTACGCATCCTGTTTCTCTGGTCGGCGTA------G--TGCC
581 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCC
* *
17736332 CGCCCATTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-A
646 CGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA
* * * * * ** * *
17736396 GATCGGGGGTTGTGGCAGCAGGATCAACAACACGCAGACGGGGACCCAACCGATCCCTGGCTTGC
711 -ACCGAGGGTTGTGGTAGCAGGATCAGCAGCACATAGA-GGGGACCCAGCCGATCCCCGGCTTGC
* * * * *
17736461 GCCTCTCACCCTTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACA
774 GCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * *
17736526 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAATATC-AAACTGGATAG
839 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GG---G
* *
17736585 AGGGTT-GTGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTC-ACTGGGG
1 AGGGTTAG-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGG
* * ** * * **
17736648 CACCATCGTCGAAGCATCGACGTTGAGCCTGACCGGCGACATTGGGGTTCCGGTGATCGGGGGGG
64 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
* *
17736713 CCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTAT
129 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
17736778 CCTTCATCAAACCT-TAGGAACT--CACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTG
194 CCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
17736840 CTAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
258 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
17736905 TTCGAGTTTTTAGCTGAAGTTTTTTGTGCAAGCCAACAAAAATACAAGAATCACGTCTACCAAGT
323 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * ** * *
17736970 TTGGGGCCAAAAGTCCTTCCGAAAAAATTTT-AAAAATCCCGAACCTTAAATAGTTTTAAAAATC
388 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATC
* *
17737034 GTGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
453 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * *
17737099 TGAAATTACAAGCCATAAAAATGGCATTGGCACAG-AGAAATATGAAGGTGTGCTTAAACCCACC
518 TGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
17737163 TACCACCCTATCGATCCACGACTTGCGCATCCCATCTCTCTGGCCGGCATAGTGCCCGCCCGCTC
582 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-CT-
* * * **
17737228 GCACGCCCACTCATTTTGTCGGTTGGCTTAGG--TA---AG--CA---GGA-TC---GAT-AG--
643 GCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * ***** * ** * * * ** *
17737276 C-ACACAGAGGG-GGACCCGGC-CGATCCCCAG--C-T--TGTGCATCCC-GCCCCTCTGGCCGG
708 CGA-ACCGAGGGTTGTGGTAGCAGGATCAGCAGCACATAGAGGGGA-CCCAGCCGATC--CCCGG
* * * * ** * * * ** ** * ***** *
17737332 CTGAGCGC--CCGCACGCTTGTTTCATGGGTTGA-CTTG-GCATACG-AAG-TTCATTCCCAGTC
769 CT-TGCGCATCC-CACCCCTCTGGC--CGGCTGAGC--GCCCGCACGCTCGTTTCGTGGGTTGAC
*
17737391 -TAAGCATATC-GAGTTCATTCCCAG--T---C-TA---AG---A-T--C-G---AA-A-CGGAT
828 TTAGGCATA-CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
*
17737433 --TG
892 CGGG
* *
17737435 AGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
1 AGGGTTAGGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * * *
17737500 CCATCGTCGAAGCATC-ACTTGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGAGGGGC
66 CCATCGTCGGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
* * * *
17737564 CGGGGGGGGGTGTGTGCATATGATGTGCGATGGTTGCTGGTACTTGACCCTTATATTGGCCCCCT
130 C---GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
17737629 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
192 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * * *
17737694 ACCAGTAGCCTTTAATGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACA
257 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
17737759 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATGCAAGGATCACGCCTACCAAT
322 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
17737824 TTTGGAGCCAAAACTCCTTCCGAAAAAAA-TTTAAAGAAATCTCGAACTGCAAAAGGTTTCAAAA
387 TTTGGGGCCAAAACTCCTTCC-AAAAAAATTTTAAA-AAATCTCGAACCGCAAAAAGTTTCAAAA
* *
17737888 ATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
450 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * *** *
17737953 GTATAAATTTACAAGGCTTAAAAATGGCATTGGCACATAGAAAAATGAAGATGTGCCTAAACCCA
515 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * ***
17738018 CCAACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCAA
580 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGC
* * * *
17738083 CCACCCGCTCTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCG
645 CCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* **** * * *
17738148 AACCGAGGGTTGTGGTAGCAGGATCGGCAGCGTGCAGATGGGGACCC-GATCGATCCCTGACTTG
710 AACCGAGGGTTGTGGTAGCAGGATCAGCAGCACATAGA-GGGGACCCAG-CCGATCCCCGGCTTG
* * *
17738212 CGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATAC
773 CGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
17738277 AGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATACCCAATCTAAGATCGGATCGGACCG
838 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGG---G
* * * * ** * *
17738338 AGGGTTACGGCAGCACATGCTGGGCTTGGGCATTTGCTGGTGTCATATTTTTCTTCATCGAGGCA
1 AGGGTTAGGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * ** * *
17738403 CCATCGCCGGAGCATCGCCGGAGAAACTGACTAGCGGCATTGGCGTTCCGACGATCGGGGGGCCC
66 CCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
*
17738468 AAGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTA
131 --GGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
17738533 TCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
193 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
17738597 CCAGTAGCCATTAAAGTGTCTGAAATGGGAATAGTTTTTTCAAATGGTCACAAAATCTTGGTACA
258 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT-GTACA
* *
17738662 CTTCGAGTTTTTATCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
322 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * **
17738727 TTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCAT-GAACCCCAAAAAGTTTTGAAAA
387 TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC-TCGAACCGCAAAAAGTTTCAAAAA
** * * *
17738791 TCGTGAAAAATAGAAAACGAGTCACCTTGCCATGAAACTTCACGTGAAAGTTTAAAGGACCATTG
451 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* ** * *
17738856 TATGAATTTACAAGCCATAAAAATGGCATTGCCACACTGAAATTTGAAGATGTGCCTAAACCCAC
516 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* *
17738921 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTGTCCCTGGCCGACGTAGTGCCCGCCTGCC
581 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCC
* * *
17738986 CGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTTCCAGTCTAAGATCAGA
646 CG-CC-CAC--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * ** * ** * * *
17739051 TCAAACTGAGGGTTGCGGTAACAGGATCAAAAGTAGGTAGAGGGGGACCCGGCTGATCCCCAGCT
707 CCGAACCGAGGGTTGTGGTAGCAGGATCAGCAGCACATAGA-GGGGACCCAGCCGATCCCCGGCT
* * * * *
17739116 TGCGCGTCCCGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCAT
771 TGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
** * * * * *
17739181 ACGGAGTTCATTCCTTGTCTAAGCGTACGGAGTTCATTCCCGGTCTAAGATTGGATTAGACCG
836 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCG--GG
* * * *
17739244 AGGGTT-GCGGCAGCACATG-TCGGGCTCGAGCATGCGCTGGTGTCACATTTTTCTTCGTCGGGG
1 AGGGTTAG-GGCAGCACATGCT-GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
17739307 CACCA---TC---G---C--CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG
64 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
* * *
17739360 CCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTAGGCCCTTATATT-G-CCCTTAT
129 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
17739423 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCCTTTGAGATTTTACAGGTTTGCTAC
194 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
17739488 CAGTAGCCATTAAAGTGTCT-AGAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTCTACAC
259 CAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
17739552 TTCAAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGT
323 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
** *
17739617 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC
388 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATC
* *
17739682 GTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGACGGCTTAAGGGACCATTGTA
453 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
17739747 TGAATCTACAAGCCATAAAAATGGCATTGGCATGGAGAAATATGAAGATGTGCCTAAACCCAGCT
518 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
17739812 ACCACCCTTTCGATCCACGGCTTACGTATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTG
583 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCTG
** * * *
17739877 CCCGCCCGTTCATTTGGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
644 CCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* **** * ** *
17739942 -AGACTGAGGGTTGCAACAGCATGAT-AGGCAGCATGTAGAGGGGGACCC-GACCGATCCTCGGC
709 GA-ACCGAGGGTTGTGGTAGCAGGATCA-GCAGCACATAGA-GGGGACCCAG-CCGATCCCCGGC
* * * * *
17740004 TTACGCATCCCGCCTCTCTGGCCGGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCA
770 TTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
** * * * *
17740069 TACAAAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGA-CTGAACCG
835 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-G---GG
* * * *
17740133 AGGGTT-GCGACAGCACATGCTGCGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGC
1 AGGGTTAG-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * ** *
17740197 ACCATCATCGGAGCATCGTCGGAGAACCTGACCGACAGCATT-GGGTTTCGGTGATC-GGGGGGT
65 ACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
* *
17740260 CGGGAGGTGTGTGCGCACATGATGTGTGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTA
130 CGGG-GG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
17740325 TCCCTCATTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
193 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
17740390 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACAC
258 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
17740455 TTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAG
323 TTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* *
17740520 TTTGGGGCTAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT
387 TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT
*
17740585 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTGAGGGACCATTGT
452 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
**
17740650 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
517 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * * * * *
17740715 TACCACCCTATCGATCCATGGCGTACGTATCCCATCTCTCTAGG-CGCCATAGTGCCCGCCCGCC
582 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGCCGACGTAGTGCCCGCCTGCC
* * * * * * * *
17740779 CACCCGCTCTTTTTGTCGGTTGGCTTAGGCGTATGGAGTTCATTCCTAGTCTAAGATCGGACC-A
646 CGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA
* * * * * * *
17740843 GACCGAGGGTTATGGTAGCAGGATCGGTAGCACACAAAGGGTGACTC-GACCGATCCCTGGCTTG
711 -ACCGAGGGTTGTGGTAGCAGGATCAGCAGCACATAGAGGG-GACCCAG-CCGATCCCCGGCTTG
* * * * * * *
17740907 CACATCCCACCCTTCTGGCCAGCTGAGCACCTGCACGCTCGTTTCATGAGTTGACTTAGGCATAC
773 CGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
17740972 GAAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTACCAGTCTAAGATTGGACCGGACCAAGGG
838 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-T----CGGATC--GGG
* *
17741037 TTATGGTAGTAGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGC
1 --A-GG--GT-----------TA-GG--GC---AGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * ***
17741102 CGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCAGCGTTGGAGAACCTGACCAATGGCATTGG
44 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
* * * * *
17741167 GGTTTCGATGATCGGGGGGGCCGGGGGCTGTGTGCACATGATGTGCGATGGGTGCTGGTGCTTGG
109 GGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
17741232 CCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
174 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
17741297 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
239 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
17741362 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAGTTTTTTTGTGCATGCCAACAAAAATAC
304 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATAC
* *
17741426 GAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAAC
368 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAAC
* *
17741491 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
433 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
17741556 AGGCTTAAGGGACCACTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCAGGCAGAAATATGA
498 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * *
17741620 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCCGTCTCTCTGGTCG
563 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * *
17741685 ACGTAGTGCCCGCCAGCCCGCCTGCACGCTTGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCAT
628 ACGTAGTGCCCGCCTGCCCGCC--CA--CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * ** * * * *
17741750 TCCCAGTCTAAGATCTGACCAAATTGAGGGTTGCGGTAGTAGGATC-GCCAGCACACAGAAGGGA
689 TCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGTAGCAGGATCAG-CAGCACATAG-AGGGG
* * * * * *
17741814 ACCCGGTCGATCCCCGGCTTGCGCTTCCCGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCATTT
752 ACCCAGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
*
17741879 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCT
817 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
*
17741944 AAGATCGGACCGGACCG
882 AAGATCGGATCGG---G
* * * *
17741961 AGGGTT-GCGGCAGCCCATGTTAGGGCTCGGCCATGTGCTGGTGCCGCATTTTTCTTTG-CTGGG
1 AGGGTTAG-GGCAGCACATGCT-GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGG
* * * *
17742024 GCACCATTGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGG
63 GCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
* * * * *
17742089 GCGGGGGGGTGTGCGCACATGATGTGCGATGTGTGCTGGAAATTGGCCCCTATATTGGCCCCCTA
128 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
17742154 TCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCA-TTCAGATTTTACAGGTTTGCTG
193 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * * * *
17742218 CCGGTAGCTATTAAAGTGTCTGAAATGCGGACATTTTTTTCAAATGGTCACAAAATCTTGAACAC
258 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
17742283 TTCGAGTTTTTAGCTGAATTGTGTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
323 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * *
17742348 TTGGGGCCAAAACTCCTACCGAAAAAATTTTAAAAAATCTCG-ACCGTAAAAGGTTTCAAAAATC
388 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATC
*
17742412 GTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
453 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * *
17742477 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAATCGACCT
518 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * ** * *
17742542 ACCACCCTATCGATCCACGGGTTGCACATCCCGTCTCTCTGGTCGGGGTAGTGCCCGCCCGCCTG
583 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCG
17742607 CCC
648 CCC
17742610 GTCCGCTAAG
Statistics
Matches: 9917, Mismatches: 1194, Indels: 644
0.84 0.10 0.05
Matches are distributed among these distances:
849 2 0.00
850 114 0.01
851 1 0.00
853 100 0.01
854 2 0.00
855 180 0.02
856 10 0.00
857 192 0.02
858 2 0.00
860 3 0.00
861 1 0.00
862 1 0.00
863 2 0.00
864 2 0.00
866 2 0.00
867 3 0.00
868 2 0.00
869 2 0.00
870 9 0.00
871 4 0.00
872 7 0.00
873 2 0.00
874 17 0.00
875 30 0.00
876 38 0.00
877 33 0.00
878 16 0.00
879 2 0.00
880 6 0.00
881 4 0.00
882 8 0.00
883 2 0.00
884 2 0.00
885 129 0.01
886 53 0.01
887 195 0.02
888 130 0.01
889 775 0.08
890 481 0.05
891 259 0.03
892 11 0.00
893 37 0.00
894 731 0.07
895 487 0.05
896 333 0.03
897 233 0.02
898 14 0.00
899 104 0.01
900 236 0.02
901 153 0.02
902 684 0.07
903 956 0.10
904 521 0.05
905 462 0.05
906 525 0.05
907 8 0.00
908 2 0.00
909 14 0.00
917 2 0.00
919 6 0.00
920 44 0.00
921 8 0.00
922 3 0.00
923 16 0.00
924 104 0.01
925 187 0.02
926 279 0.03
927 23 0.00
928 481 0.05
929 190 0.02
930 188 0.02
931 48 0.00
932 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
AGGGTTAGGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
CCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCC
ACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGA
GGGTTGTGGTAGCAGGATCAGCAGCACATAGAGGGGACCCAGCCGATCCCCGGCTTGCGCATCCC
ACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGG
Found at i:17733832 original size:26 final size:26
Alignment explanation
Indices: 17733795--17733847 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
17733785 GTTGACTTAG
17733795 GCATACGTAGTTCATT-CCTAGTCTAA
1 GCATACGTAGTTCATTGCC-AGTCTAA
17733821 GCATACAG-AGTTCATTGCCAGTCTAA
1 GCATAC-GTAGTTCATTGCCAGTCTAA
17733847 G
1 G
17733848 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGTAGTTCATTGCCAGTCTAA
Found at i:17734753 original size:26 final size:26
Alignment explanation
Indices: 17734723--17734775 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17734713 GTTGACTTAG
17734723 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
** * *
17734749 GCATATGGAGTTCATTCCTAGTGTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
17734775 G
1 G
17734776 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:17735664 original size:26 final size:26
Alignment explanation
Indices: 17735628--17735680 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17735618 GTTGACTTAG
17735628 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
17735654 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17735680 G
1 G
17735681 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17736549 original size:26 final size:25
Alignment explanation
Indices: 17736519--17736569 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
17736509 GTTGACTTAG
17736519 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATT-CCAGTCTAA
*
17736545 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
17736570 TATCAAACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:17737397 original size:26 final size:26
Alignment explanation
Indices: 17737368--17737420 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17737358 GGTTGACTTG
17737368 GCATA-CGAAGTTCATTCCCAGTCTAA
1 GCATATCG-AGTTCATTCCCAGTCTAA
17737394 GCATATCGAGTTCATTCCCAGTCTAA
1 GCATATCGAGTTCATTCCCAGTCTAA
17737420 G
1 G
17737421 ATCGAAACGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATATCGAGTTCATTCCCAGTCTAA
Found at i:17738307 original size:26 final size:26
Alignment explanation
Indices: 17738271--17738323 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17738261 GTTGACTTAG
* *
17738271 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATACCCAATCTAA
*
17738297 GCATACGGAGTTCATACCCAATCTAA
1 GCATACAGAGTTCATACCCAATCTAA
17738323 G
1 G
17738324 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAATCTAA
Found at i:17739210 original size:26 final size:26
Alignment explanation
Indices: 17739180--17739229 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17739170 GACTTAGGCA
**
17739180 TACGGAGTTCATTCCTTGTCTAAGCG
1 TACGGAGTTCATTCCCGGTCTAAGCG
17739206 TACGGAGTTCATTCCCGGTCTAAG
1 TACGGAGTTCATTCCCGGTCTAAG
17739230 ATTGGATTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCGGTCTAAGCG
Found at i:17740095 original size:26 final size:26
Alignment explanation
Indices: 17740066--17740118 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17740056 GTTGACTTAG
17740066 GCATACAAAGTTCATTCCCAATCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
** * *
17740092 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
17740118 G
1 G
17740119 ATCAGACTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAATCTAA
Found at i:17740996 original size:26 final size:26
Alignment explanation
Indices: 17740966--17741018 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17740956 GTTGACTTAG
*
17740966 GCATACGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
*
17740992 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
17741018 G
1 G
17741019 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAGTCTAA
Found at i:17741070 original size:26 final size:26
Alignment explanation
Indices: 17741022--17741071 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
17741012 GTCTAAGATT
*
17741022 GGACCGGACCAAGGGTTATGGTAGTA
1 GGACCGGACCAAGGGTTACGGTAGTA
* *
17741048 GGACCGGACCGAGGGTTGCGGTAG
1 GGACCGGACCAAGGGTTACGGTAG
17741072 CACATGCTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.22, C:0.18, G:0.44, T:0.16
Consensus pattern (26 bp):
GGACCGGACCAAGGGTTACGGTAGTA
Found at i:17741930 original size:26 final size:26
Alignment explanation
Indices: 17741894--17741946 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17741884 GTTGACTTAG
*
17741894 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17741920 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17741946 G
1 G
17741947 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17744817 original size:870 final size:873
Alignment explanation
Indices: 17742624--17744887 Score: 3314
Period size: 895 Copynumber: 2.6 Consensus size: 873
17742614 GCTAAGATTG
* * * *
17742624 GACCAGACCGAGGGTTGCGACAGCACATGTTGGGCTCGGGCATCTGCTGGTGCCGCATTTTTCTT
1 GACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTT
* * * * *
17742689 TGCTGGGGCACCATCGTCGGAGCATCACCAGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGAT
66 CGC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA-CGACGGCATTGGGGTTCCGGCGAT
*
17742754 CGGGGGGTC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
129 CGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
17742818 CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGT
194 CCCCCTATCCCTCATCAAACCTTGAGAACTCACACACCTTAAAGAGCATTTGAGATTTTACAGGT
* *
17742883 TTGCTACCAAAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
259 TTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
17742948 GTACACTTCGAGTTTTTAGCT-AAGTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
324 GTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * *
17743012 ACCAAATTTGGGGCCAAAACTCCTTCCAAAAAAATTTT-AAAAAAT-CTCGAACCGTAAAAAGTT
388 ACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAAATCCT-GAACCGTAAAAAGTT
*
17743075 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGG
452 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGG
*
17743140 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
517 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTA
* * ** *
17743205 AACCGACCTACCACCCTATCGATCCACGGCTTGCGCATCCTATCTCTCTGGCCGATGTGGTGCCT
582 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACATGGTGCCC
* * * *
17743270 GTCCGTCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
647 GCCCGCCCGCTTGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGAC
* *
17743335 CAGACCGAAGGTTGTGGCAGCAGGTTCGTCGCACGCAGAGGGGGACCCGACCGATCCCCGACTTA
712 CAGACCGAAGGTTGTGGCAGCAGGATCGACGCACGCAGAGGGGGACCCGACCGATCCCCGACTTA
* * * *
17743400 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAT
777 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATAC
17743465 GGAGTTCATTCCCAGTCTAAGCATACGCAGTTCATTCCCAGTCTAA
842 GGAGTTCATTCCCAG-CT-AG-ATA--CAG--------CAGTC-AA
* * * *
17743511 GATCGGATCGGACCGAGGGTTGCGGCAGCACATACTGGGCTTGGGCATGTGCTGGTGCCGTTTTT
1 GA-C----CGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTT
* * *
17743576 TTCTTCGCCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCCG
61 TTCTTCG-CGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACGA-CGGCATTGGGGTTCCG
*
17743641 ACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
124 GCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
17743706 ATTGGCCCCCTATCCTTCATCAAACCTTGAGAATTCACACACCCTTAAAGAGCATTTGAGATTTT
189 ATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACA-CCTTAAAGAGCATTTGAGATTTT
* * *
17743771 TCAGGTTTGCTGCCACTAGCCATTAAAGTGTCTGAAAATGGGGACACTTTTTTCAAATTGTCACA
253 ACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACA
* * *
17743836 AAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAGAATACAAGGTTC
317 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* **
17743901 ATGTCTACCAAGTTTGGTTCCAAAACTCCTTCCGAAAAAA-TTTAAAAAAATCCTGAACCGTAAA
382 ACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAAATCCTGAACCGTAAA
* * *
17743965 AAGTTTCAAAAATCATAAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTTACGTGAAGGCTT
447 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* **
17744030 AAGGGACCATTGTATGAATTTACAAGCCATAGGAATGGCATTGGCATGCAAAAATATGAAGATGT
512 AAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGT
* *
17744095 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATGG
577 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACATGG
* *
17744160 TGCCCGCCCGCCCGCTTGTTTCGTCGATTGGCTTAGGCATA-GAGGGTTCATTCCCAGTCTAAAA
642 TGCCCGCCCGCCCGCTTGTTTCATCGATTGGCTTAGGCATACG-GAGTTCATTCCCAGTCTAAAA
* * * * **
17744224 TCAGATCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCC
706 TCAGACCAGACCGAAGGTTGTGGCAGCAGGATCGAC-GCACGCAGAGGGGGACCCGACCGATCCC
* * * * *
17744289 CGGCTTGCGCATCCCGCCTCTTTGGCCGGCTGAGCACCCGCACGCTTGTTTCATGGGTTAACTTA
770 CGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTAACTTA
17744354 GGCATACGGAGTTCATTCCCAG-T-G-TA-AG-A-TC-A
835 GGCATACGGAGTTCATTCCCAGCTAGATACAGCAGTCAA
*
17744386 GACCGGACCGAGGGTTGCGACAGCACATGCTGGGCACGGGCATGTGCTGGTGCCGTATTTTTCTT
1 GACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTT
17744451 CGTCGGGGCACCATCG-CTGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGGCGA
66 CG-CGGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGAC-GACGGCATTGGGGTTCCGGCGA
*
17744515 TCGGGGCGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATT
128 TCGGGG-GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
17744580 GGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACACCTTAAAGAGCATTTGAGATTTTACGG
192 GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACACCTTAAAGAGCATTTGAGATTTTACAG
* *
17744645 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATC
257 GTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
17744710 ATGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTA
322 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * * * *
17744775 TACCATGTTTGGGACCAAAAATCCTTTCGAAAAAATTTTAAAAGAATCCCGATCCGTAAAAAGTT
387 TACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTT
* * *
17744840 TAAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATTAAACTTC
452 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
17744888 TCCCGAACCG
Statistics
Matches: 1246, Mismatches: 112, Indels: 55
0.88 0.08 0.04
Matches are distributed among these distances:
869 122 0.10
870 240 0.19
871 93 0.07
874 1 0.00
875 3 0.00
877 2 0.00
878 1 0.00
887 4 0.00
888 1 0.00
890 2 0.00
891 1 0.00
892 115 0.09
893 89 0.07
894 58 0.05
895 407 0.33
896 107 0.09
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (873 bp):
GACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTT
CGCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACGACGGCATTGGGGTTCCGGCGATCG
GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTTGAGAACTCACACACCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
AAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAA
AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCA
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACC
CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACATGGTGCCCGCCC
GCCCGCTTGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCAGA
CCGAAGGTTGTGGCAGCAGGATCGACGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACGCA
TCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAG
TTCATTCCCAGCTAGATACAGCAGTCAA
Found at i:17745972 original size:26 final size:26
Alignment explanation
Indices: 17745942--17745994 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17745932 GTTGACTTAG
* *
17745942 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
17745968 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
17745994 G
1 G
17745995 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:17746890 original size:26 final size:26
Alignment explanation
Indices: 17746853--17746905 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17746843 GTTAACTTAG
* *
17746853 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17746879 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17746905 G
1 G
17746906 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17746980 original size:898 final size:887
Alignment explanation
Indices: 17745083--17747934 Score: 3426
Period size: 885 Copynumber: 3.2 Consensus size: 887
17745073 GATGACTTAG
* * * * * *
17745083 GCATACGAAGTTTATTTCCAGTCTAAGATCGGA-CAGGATCGAGGGTTGTGGCAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAATCTAAGATCAGATCA-GACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
17745147 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTAGAGCATCACCGGAG
65 GCTCAGGCATCTGCTGGTGCCACA--TTTCTTCGT-----C-TCGTCG---GAGCATCGCCGGAG
*
17745212 AACCTGACCGACGGCGTTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
119 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
17745277 AGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
184 AGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
17745342 GCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAATAGCCATT-AAGTGTTTGAAAT
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
17745406 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
17745471 TGCATGCCAATAAAAATACAAGGATCATGTCTA-C---------CAAAACTCCTTCTAAAAAAAG
379 TGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGCAAAACTCCTTCCAAAAAAAT
* * **
17745526 TTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
444 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
17745591 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGCATT
509 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
17745656 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCA
574 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * **
17745721 TCCTGACTCTCTGGATGGCATAGTGGCCGCC-CG-CCCGCCCGCTTG-T-TTTGTCA--GTT-GC
639 TCCCGTCTCTCTGGACGGCATAGTGCCCGCCTCGCCCCGCCCGCCAGCTCTTT-TCATCGTTGGC
* *
17745779 TTTAGGCATACGGAGTTCATTCCTAATCTAAGATCTGACCAGACC-AAGGTTGTGGTAGCAGGAT
703 -TTAGGCATACGGAGTTCATTCCTCATCTAAGAT-TGACCAGACCGAAGG-T-TGATAGCAGGAT
* * *
17745843 CGGTAGTACGCAGAGTGGCACCCGATCGATCGCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
764 CGGTAGCACGCAGAG-GGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * * *
17745908 AGCGCCCGCATGTTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAA
828 AGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
17745968 GCATACGGAGTTCATTCCCAATCTAAGATCAGATC-GAACCGAGGGTTGAGGCAGCACATGCTAG
1 GCATACGAAGTTCATTCCCAATCTAAGATCAGATCAG-ACCGAGGGTTGCGGCAGCACATGCTGG
* *
17746032 G-TCAGGCATGTGCTGGTGCCAAATTTTTCTTCGCTGGCACACCATCGTCGGAGCATCGCCGGAG
65 GCTCAGGCATCTGCTGGTGCCACA--TTTCTTCG-T-------C-TCGTCGGAGCATCGCCGGAG
17746096 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
119 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * *
17746161 GCGATGGGTGCTGGTACTTGGCCTTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCA
183 GAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
17746226 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
17746291 TGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTACGATTTTTTAGTTGAATTTGTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
17746356 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAACTCCTTCCAAAAA
378 GTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTT-GGGC-AAAACTCCTTCCAAAAA
* *
17746421 AATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCT
441 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * * *
17746486 TGCCTTGAAAGTTCACATGATGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGC
506 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * * * *
17746551 ATTGGCACACAGAAATATGAAGGTATGCCTAAACCTACCTATCACCCTATCAATCCACGGCTTGC
571 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
17746616 ACATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCACTCGCACACCTGCCCGCCAGCTCTTTTCA
636 GCATCCCGTCTCTCTGGACGGCATAGTGCCCG--C-CTCGC-C-CC-GCCCGCCAGCTCTTTTCA
* * * *
17746681 TCTGTTGGCTCAGGCATACGGAGTTCATTCCCCATCTAAGATTAGACCAGACCGAGGGTTACGAC
695 TC-GTTGGCTTAGGCATACGGAGTTCATTCCTCATCTAAGATT-GACCAGACCGAAGGTT--GAT
* * * *
17746746 AGCAGGATCGTTAGCACGCAGAGGGGAACCCGACCGATCCCCGGCTTGCGCATCCTGTCCCTCTG
756 AGCAGGATCGGTAGCACGCAGAGGGG-ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
*
17746811 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCATTC
820 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTC
17746876 TAA
885 TAA
* * * *
17746879 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
17746944 CTCGGGCATCTGCTGGTGCCACATTT-TTC-T-TCGTCGGGGCACCATCGCCGGAG---C--ATC
66 CTCAGGCATCTGCTGGTGCCACATTTCTTCGTCTCGTC--GG-AGCATCGCCGGAGAACCTGACC
* ** * * * *
17747001 G-C--C---GGAGAACC--TGATC-GGGGGACCGCGGGG-GTACGCACATGATGTGAGATGGGTG
128 GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGAGATGGGTG
* *
17747056 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCAAGAACTCACACCCCCTTA
193 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
17747121 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGATACT
258 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * * *
17747186 TTTTTCAAATGGTAACAAAATATTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGGGCATGGCA
323 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
17747251 ATAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAAATCCTT-CAGAAACAATTTTAAA
388 ATAAAAATACAAGGATCATGTCTACCAAG-TTTGGG-CAAAACTCCTTCCA-AAAAAATTTTAAA
* *
17747315 AAATCCCGAGCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
450 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
17747380 ACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCAAAAAAATGGCATTGGCATG
515 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
17747445 CAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATGGATCCATGGCTTGCGCATCCCGT
580 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
17747510 CTCTCTAGTCGGCATAGTGCCCGTC-CG-CCCG--C-CCA-CTCGTTTCATCGGTTGGCTTAGGC
645 CTCTCTGGACGGCATAGTGCCCGCCTCGCCCCGCCCGCCAGCTCTTTTCATC-GTTGGCTTAGGC
* * * * *
17747569 ATACGGAGTTCATT-CTCAGTCTAAGATCGGATCGGACTGAAAGTTGTAGTAGCAGGATCGGTAG
709 ATACGGAGTTCATTCCTCA-TCTAAGAT-TGACCAGACCGAAGGTTG-A-TAGCAGGATCGGTAG
* * * *
17747633 CACACAAAGAGGGGACCCGATCGATCCCCCGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGC
770 CACGC--AGAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
17747698 CCACACGCTTGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 CCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** *
17747753 GCAAACGGAGTTCATTCCCAATCTTAGATCGGATTGGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
**
17747818 CTCAGGCA-CGTGCTGGTGTCGCATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGCCGGAG
66 CTCAGGCATC-TGCTGGTG-C-CACATTTCTTCGT--------C-TCGTCGGAGCATCGCCGGAG
* * *
17747882 AACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGGCTGGGGGGTGTGC
119 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGC
17747935 CCGCTCGTTT
Statistics
Matches: 1684, Mismatches: 201, Indels: 149
0.83 0.10 0.07
Matches are distributed among these distances:
871 1 0.00
872 4 0.00
873 72 0.04
874 169 0.10
875 9 0.01
876 5 0.00
877 4 0.00
878 3 0.00
879 1 0.00
881 2 0.00
882 1 0.00
884 86 0.05
885 640 0.38
886 115 0.07
887 15 0.01
888 10 0.01
890 8 0.00
891 1 0.00
893 2 0.00
895 1 0.00
896 7 0.00
897 1 0.00
898 226 0.13
899 11 0.01
900 6 0.00
901 13 0.01
902 2 0.00
904 1 0.00
905 2 0.00
906 7 0.00
907 5 0.00
908 3 0.00
909 5 0.00
910 48 0.03
911 178 0.11
912 20 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
GCATACGAAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATCTGCTGGTGCCACATTTCTTCGTCTCGTCGGAGCATCGCCGGAGAACCTGACCGAC
GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATA
AAAATACAAGGATCATGTCTACCAAGTTTGGGCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGACGGCATAGTGCCCGCCTCGCCCCGCCCGCCAGCTCTTTTCATCGTTGGCTTAGGCATACGGA
GTTCATTCCTCATCTAAGATTGACCAGACCGAAGGTTGATAGCAGGATCGGTAGCACGCAGAGGG
GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
TCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17748231 original size:159 final size:158
Alignment explanation
Indices: 17747949--17748299 Score: 413
Period size: 159 Copynumber: 2.2 Consensus size: 158
17747939 TCGTTTCGTT
* * ** *
17747949 GGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAATCGGATCAAGGGTTGCTGTAG
1 GGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCAAATCAAGGGTTGCAGTAG
* * * *
17748014 CAGGATCGATAGCGCACAGCGAGGGACCCGGTCGATCCCTGGGTTACGCATCTCGCCCTTCTAGC
66 CAGGATCGATAGCACACAGAGAGGGACCCGGCCGATCCCTGGCTTACGCATCTCGCCC-TCTAGC
* * *
17748079 CGGTTGAGCGCCCGTACGCTCGTTTAATG
130 CGGCTGAGCGCCCGCACGCTCGTTTAATA
** * * * *
17748108 GGTTGACTTAGGCATACAGAGTTCATTCTCAGTCTAAGATCAGACCAAA-CTGAGGGTTTCAGTA
1 GGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCAAATC-AAGGGTTGCAGTA
* *
17748172 GTAGGATCGGTAGCACACAGAG-GTGGACCCGGCCGAT-CCTCGGCTTACGCATC-CTGCCCTCT
65 GCAGGATCGATAGCACACAGAGAG-GGACCCGGCCGATCCCT-GGCTTACGCATCTC-GCCCTCT
** *
17748234 AGCCGGCTGAGCGTTCGCACGCTCGTTTCATA
127 AGCCGGCTGAGCGCCCGCACGCTCGTTTAATA
*
17748266 GGTTGACTTAGGCATATGGAGTTCATTCCTAGTC
1 GGTTGACTTAGGCATATGGAGTTCATTCCCAGTC
17748300 AAAGCATACG
Statistics
Matches: 161, Mismatches: 27, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
158 65 0.40
159 96 0.60
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (158 bp):
GGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCAAATCAAGGGTTGCAGTAG
CAGGATCGATAGCACACAGAGAGGGACCCGGCCGATCCCTGGCTTACGCATCTCGCCCTCTAGCC
GGCTGAGCGCCCGCACGCTCGTTTAATA
Found at i:17749036 original size:26 final size:26
Alignment explanation
Indices: 17749007--17749060 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
17748997 TGGGTTGACT
17749007 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
17749033 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
17749059 TA
1 TA
17749061 AGATCGGACC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:17749948 original size:26 final size:26
Alignment explanation
Indices: 17749919--17749971 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17749909 GTTGACTTAG
* *
17749919 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17749945 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17749971 G
1 G
17749972 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17750863 original size:26 final size:26
Alignment explanation
Indices: 17750823--17750873 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17750813 TTGACTTAGG
*
17750823 CATACGGAGTCCATTCCCAGTCTAAA
1 CATACGAAGTCCATTCCCAGTCTAAA
*
17750849 CATACGAAGTTCATTCCCAGTCTAA
1 CATACGAAGTCCATTCCCAGTCTAA
17750874 GATCAGATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (26 bp):
CATACGAAGTCCATTCCCAGTCTAAA
Found at i:17751544 original size:16 final size:16
Alignment explanation
Indices: 17751523--17751553 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
17751513 GTCGGCGTAG
17751523 TGCCCGCCCACCCGCC
1 TGCCCGCCCACCCGCC
*
17751539 TGCCCGCCCGCCCGC
1 TGCCCGCCCACCCGC
17751554 TCGTTTCGTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.03, C:0.68, G:0.23, T:0.06
Consensus pattern (16 bp):
TGCCCGCCCACCCGCC
Found at i:17751764 original size:26 final size:26
Alignment explanation
Indices: 17751734--17751786 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17751724 GTTGACTTTG
*
17751734 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17751760 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17751786 G
1 G
17751787 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17752290 original size:909 final size:905
Alignment explanation
Indices: 17748938--17753440 Score: 6224
Period size: 909 Copynumber: 5.0 Consensus size: 905
17748928 CCACCCTATT
* * * * *
17748938 GATCCCCGGCTTGCGCATCTCGCCCATCTGGCCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTT
1 GATCCCCAGCTTGCGCATCTCGCCCCTCTAGCC-AATGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
17749003 GACTTAGGCATACGGAGTTCATTCCCAGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
65 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * *
17749068 ACCGAACCAAGGATTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTC
130 ACCGGACCGAGG-TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * *
17749133 GTCGGGGCAGCATCGTCAGAGCATCACCGGAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGG
194 GCCGGGGCACCATCGTCGGAGCAT---C---G--TCGT---AGAACCTGACTGGCAGCATT-GGG
* ** * *
17749198 TTCCGACGATCGGGGGCGGGGGGGGGTGTGCGCACATGATGTGCTATGGGTGATGGTACTTGGCC
247 TTTCGACGATCGGGGGC-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
17749263 CTTATATTGGCCTCCTATCCCTCATCAAACCGCGAGAACTCACACCCCCTTAATGAGCATTTGAG
311 CTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCA-ACCCCCTTAAAGAGCATTTGAG
* * *
17749328 ATTTTACAGCTTTGCTGCCAGTAGCCAGTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGT
375 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * * *
17749393 CACAAAAT-TTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTACATACCAACAAAGATTCAA
440 CACAAAATCTTT-TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * * *
17749456 GGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG
504 GGATCACGTCTACCAAGGTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCA
* * *
17749521 CAAAAAGTTTCAAAAATTATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCATGTGAAG
569 CAAAAA-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*** *
17749586 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGTAG
633 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
*
17749651 ATGTGCCTAAACCCACGTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
698 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * *
17749716 GTATTACCCGCCCACCCG--T----------CCGCTCGTTTCGTTGGTTGGCTTAGGCATATGGA
763 GTAGTGCCCGCCCACCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGA
* * * ** * * ** *
17749769 GTTCATTCCTAGTCTAAGATCGGACCGAACGGAGGGTTGCAGTAGCAGGATCGACAAAACATAGA
828 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGA
* **
17749834 GGGGGACTCGGCC
893 GGGGGACCCGATC
* * * * * * *
17749847 GATCACCAGCTTGCGCATC-CTGCCCCTCT-GACCGACTGAGCACACGCATGCTTGCTTCGTGGG
1 GATCCCCAGCTTGCGCATCTC-GCCCCTCTAG-CC-AATGAGCGCCCGCACGCTCGTTTCGTGGG
* *
17749910 TTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
63 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
17749975 AGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCT
128 GGACCGGACCGA-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* *
17750040 TCGTCGGGGCACCATCGTCGGAGCATCG-C-TACAGAACCTGA-TCGGC-GACATTGGGGTTC--
192 TCGCCGGGGCACCATCGTCGGAGCATCGTCGT--AGAACCTGACT-GGCAG-CATTGGGTTTCGA
* **
17750099 CGATCGGTGGGGCCGGGGGGTGTGTACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
253 CGATCGG-GGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
17750164 TTGGCCTCCTATCCCTCATCAAACCTCGAGAACTC-ACACCCCTTAAAGAGCATTTGAGATTTTA
317 TTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCAAC-CCCCTTAAAGAGCATTTGAGATTTTA
*
17750228 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAA
381 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * * * *
17750293 ATCTTGTACACTTTGATTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAACACCAGGATCAC
446 ATCTTTTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* ** * ** * * * * *
17750358 GTCCACTTA-GTTTGGGAAAAAAATGCCTTCCGAAAAAGTTTTAAAAAATCTCAAACCATAAAAA
511 GTCTACCAAGGTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAA
**
17750422 GTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
575 -TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
17750487 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
639 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
* *
17750552 CTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
704 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * * * *
17750617 CCTG----CCCGCAC-GCCCGCACGCCCGCTCATTTTGTCAGTTGGCTTAGGCATATGGAGTTCA
769 CCCGCCCACCCGC-CTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCA
* * * * * * * *
17750677 TTCCAAGCCTAAGATTGGATCAGATCGAGGGTTGTGGCAGCAGGATGGGCAGCACGCAGAGGGGG
833 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGG
**
17750742 ACTTGA-C
898 ACCCGATC
** * * ** *
17750749 TGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAACGCCCGCACGCTCGTTTCGTGGGT
1 -GATCCCCAGCTTGCGCATCTCGCCCCTCTAGCC-AATGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * *
17750814 TGACTTAGGCATACGGAGTCCATTCCCAGTCTAAACATACGAAGTTCATTCCCAGTCTAAGATCA
64 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * *
17750879 GATCGGACCGAAGGTTGCGGCAGCACATGCTGGGCTCGCGCATGTGCTGGTGCTGTATTTTTCTT
129 GACCGGACCG-AGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * *
17750944 CGCCGGGGCACCATCGTCGGAGCATCG-CTGGAGAACCTAACCGGCGGCATTGGGGTTCTGACGA
193 CGCCGGGGCACCATCGTCGGAGCATCGTC-GTAGAACCTGACTGGCAGCATTGGGTTTC-GACGA
*
17751008 TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
256 TC--GGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
17751073 GGCCCCCTATCCCTCATCAGACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
319 GGCCTCCTATCCCTCATCAAACCTCGAGAACTCA-ACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
17751138 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCATATGGTCACAAAAT
383 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
17751203 CTTTTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAGAAGGATCACCT
448 CTTTTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
* * ** * * * *
17751268 CTACCAAGTTTAGGGCCAAAAAACCTTCCGAAAAAATTTAAAAAAATCCCAAACCGTCAAAAGTT
513 CTACCAAGGTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-ACAAAAATT
**
17751333 TTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
577 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
17751398 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
642 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* *
17751463 AACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCC
707 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* * *
17751528 GCCCACCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGGTTAGGCATATGGAGTTTACTCC
772 GCCCACCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCC
* * *
17751593 CAGTCTAAGACCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGGCAGCACGTAGAGGGGGACCC
837 CAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCC
17751658 GATC
902 GATC
* *
17751662 GATCCCCAGCTTGCGCATCTCGCCCCTCTAGCCAATAGAGCGCTCGCACGCTCGTTTCATGGGTT
1 GATCCCCAGCTTGCGCATCTCGCCCCTCTAGCCAAT-GAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * *
17751727 GACTTTGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTGG
65 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * *
17751792 ACCGGACCGAGTGTTGTGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTT
130 ACCGGACCGAG-GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * **
17751857 GCCAGGGCACCATCGTCGGAGCATCGTCGTAGAACCTGACTGACAGCATTGGTGTTTCGGTGATC
194 GCCGGGGCACCATCGTCGGAGCATCGTCGTAGAACCTGACTGGCAGCATTGG-GTTTCGACGATC
17751922 GGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
258 GGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
17751987 TCCTATCCCTCATCAAACCTCGAGAACTCAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
323 TCCTATCCCTCATCAAACCTCGAGAACTCAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
17752052 GCTGCCAATAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTTT
388 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTT
* *
17752117 ACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCATGTCTACC
453 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
*
17752182 AAGGTTGGGGCCAAAACTCCTTCGGAAAAAATTTTAAAAAATCCCGAACCACAAAACATTTCAAA
518 AAGGTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAA-ATTTCAAA
* *
17752247 AATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCAT
582 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
17752312 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTAACC-AAACC
647 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT-GCCTAAACC
* *
17752376 CACCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCC
711 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * *
17752441 ACCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGGTTAGGCATATGGAGTTTACTCCCAGT
776 ACCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGT
* * *
17752506 CTAAGACCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGGCAGCACGTAGAGGGGGACCCGATC
841 CTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATC
* *
17752571 GATCCCCAGCTTGCGCATCTCGCCCCTCTAGCCAATAGAGCGCTCGCACGCTCGTTTCATGGGTT
1 GATCCCCAGCTTGCGCATCTCGCCCCTCTAGCCAAT-GAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * *
17752636 GACTTTGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTGG
65 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * *
17752701 ACCGGACCGAGTGTTGTGGAAGTACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC
130 ACCGGACCGAG-GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * *
17752766 GCCAGGGCACCATCGTCGGAGCATCGTCGTAGAACCTGACTGACAGCATTGGTGTTTCGATGATC
194 GCCGGGGCACCATCGTCGGAGCATCGTCGTAGAACCTGACTGGCAGCATTGG-GTTTCGACGATC
* **
17752831 GGGGGCCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTCATACTTGGCCCTTATATTGGCC
258 GGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
17752896 CCCTATCCCTCATCAAACCTCGAGAACTCAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
323 TCCTATCCCTCATCAAACCTCGAGAACTCAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
17752961 GCTGCCAATAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTTT
388 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTT
*
17753026 ACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
453 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
*
17753091 AAGGTTGGGGCCAAAACTCCTTCGGAAAAAATTTTAAAAAATCCCGAACCACAAAACATTTCAAA
518 AAGGTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAA-ATTTCAAA
*
17753156 AATCATGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
582 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * * *
17753221 TGTATAAATTTACAAGCCATAAAAATGGGATTGGCACGTAGAAATATGAAGATGTACCTAAACCC
647 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * * * *
17753286 ACCTACCACCCTATCAATCCACGACATGTGCATCCTGTCTCTCTGGCCGACGTAGTGCCCG----
712 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCA
* * *
17753347 --C-CC-GCCCGCCCGCCCACTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
777 CCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTC
* *
17753408 TAAGATCGGACTGGACCGAGGGTTGTGACAGCA
842 TAAGATCGGACCGGACCGAGGGTTGTGGCAGCA
17753441 CATGCTGGGC
Statistics
Matches: 3266, Mismatches: 275, Indels: 114
0.89 0.08 0.03
Matches are distributed among these distances:
891 4 0.00
893 2 0.00
894 120 0.04
895 343 0.11
896 3 0.00
897 6 0.00
898 17 0.01
899 1 0.00
900 1 0.00
901 80 0.02
902 3 0.00
903 305 0.09
904 4 0.00
906 6 0.00
907 86 0.03
908 384 0.12
909 1475 0.45
910 96 0.03
911 4 0.00
912 320 0.10
913 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (905 bp):
GATCCCCAGCTTGCGCATCTCGCCCCTCTAGCCAATGAGCGCCCGCACGCTCGTTTCGTGGGTTG
ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CCGGACCGAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGC
CGGGGCACCATCGTCGGAGCATCGTCGTAGAACCTGACTGGCAGCATTGGGTTTCGACGATCGGG
GGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCC
TATCCCTCATCAAACCTCGAGAACTCAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
GTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAATTTCAAAAATC
ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCG
CCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAG
ATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATC
Found at i:17752453 original size:16 final size:16
Alignment explanation
Indices: 17752432--17752462 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
17752422 GTCGGCGTAG
17752432 TGCCCGCCCACCCGCC
1 TGCCCGCCCACCCGCC
*
17752448 TGCCCGCCCGCCCGC
1 TGCCCGCCCACCCGC
17752463 TCGTTTCGTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.03, C:0.68, G:0.23, T:0.06
Consensus pattern (16 bp):
TGCCCGCCCACCCGCC
Found at i:17752673 original size:26 final size:26
Alignment explanation
Indices: 17752643--17752695 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17752633 GTTGACTTTG
*
17752643 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17752669 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17752695 G
1 G
17752696 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17754278 original size:25 final size:26
Alignment explanation
Indices: 17754242--17754293 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
17754232 GTTGACTTAG
17754242 GCATACGAAGTTCATTCC-AGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
*
17754267 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
17754293 G
1 G
17754294 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:17755179 original size:26 final size:26
Alignment explanation
Indices: 17755143--17755195 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17755133 GTTGACTTAG
17755143 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17755169 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17755195 G
1 G
17755196 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17755521 original size:902 final size:899
Alignment explanation
Indices: 17753385--17761257 Score: 9714
Period size: 902 Copynumber: 8.9 Consensus size: 899
17753375 GTTGGCTTAG
**
17753385 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTGTGACAGCACATGCTGG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGATC-GGA-CGAGGGTTACGACAGCACATGCTGG
* ** * *
17753449 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACAATCGCCAGAGCATCACTGGAG
63 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAG
* * *
17753514 AACTTGATCGACGACATTGGGGTTCCGACGA--------TC-GGGGGGGTGTGCGCACATGATGT
128 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGGTGTGCGCACATGATGT
* *
17753570 GCGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * * * *
17753635 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACGAGTAGCCGTTAAATTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
17753700 TGGGGACAGTTTTTTCAAATGGTCACAAAACCTTGTACAGTTCGAGTTTTTAGCTGAATTTGTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
17753765 GTGCATGCTAACAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
*
17753830 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
17753895 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTTTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
17753960 ATTGGCATGCAGAAATATGAAGATGGGCCTAAACCCACGTACCACCCTATTGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
17754025 GCATCCAGTCTCTCTGGCCGACGTAGT--------G--CCCACCCGCTTGTTTCGTTGGTTGGCT
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCT
* ** * * *
17754080 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCAGATCGGGGGTTGCGGTAGCAGGATCG
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCG
* * *** * * * *
17754145 ACAGCATGCAAAGGGGGACCCGGTTGAACCCTGGCTTGCGCATCGCGCCCCCCTGGCTAG-TTGA
778 ACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC--GCTTGA
** *
17754209 GCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGAAGTTCATT-CCAGTCTAA
841 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
17754267 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGGATCGGA-CGAGGGTTACGACAGCACATGCTGGG
* * * *
17754332 CTCGAGCAAGTG-TCGGTGCCGCATTTTTCTTCGTCAGGGCACCATCG-TCGGAGCAACGCCGGA
64 CTCGAGCATGTGCT-GGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGCCGGA
* * * * *
17754395 GAACCTAACCTG-CGGCATTGGGGTTTCGATGATCGAGGGGGTCGAGGGTGGTGTGCGCACATGA
127 GAACCTGACC-GACGGCATTGGGGTTCCGACGATCG-GGGGGTCGGGGGGGGTGTGCGCACATGA
* *
17754459 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAAC
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
* *
17754524 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTG
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
17754589 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
17754654 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAGCAAGTTTGGGGCCAAAACTCCTAT-GA
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCA
*
17754718 AAAAAATTTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
449 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
17754783 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTAT-AAGTTTACAAGCCATAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAA
*
17754847 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGG
578 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
17754912 CTTGTGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCTACCCGCCCACTCGTTTCGTCG
643 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC--CCCGCCCGCTCGTTTCGTCG
*
17754977 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTGCGGCAGC
706 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGC
* *
17755042 AGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGC-
771 AGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCG
* *
17755106 CTTG-GCGCCCGCTCGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 CTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
17755169 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCACGGGTTACAACAGTACATGCTAGG
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGGATCGGACGA-GGGTTACGACAGCACATGCTGGG
*
17755234 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGA
64 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGA
* * * * * *
17755299 ACCTGACCGACGACTTTGGGGTTCCGGCGATTGAGGGAGTCGGGGGGGGTGTGGGCACATGATGT
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGTCGGGGGGGGTGTGCGCACATGATGT
* *
17755364 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* *
17755429 CACCTCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
17755494 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
17755559 ATGCATGCCAACAAGAATAGAAGGATCATGTCTAACAAGTTTGGGGCCAAAACTCCTTCCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * * **
17755624 AATTTTAAAAAATCTCGAATCGCAAAAAGTTTTC-AAAACCGTGAAAAATAGAAAACTCGT-GTC
453 AATTTTAAAAAATCCCGAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
17755687 TTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
17755752 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
17755817 CGCATCCCGTCTCTCTAGCCGGCGTAGTGCACGCCCG--CCCGCCCGCTCGTTTCGTCGATTGGC
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ** *
17755880 TTAGGCATACGGAGTTCATTCGCAGTCTAAGATCAGACCGGATAGAGGGTTGTGGCAGCAGGATC
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATC
* * * * *
17755945 -AGTAGCACGTAGAGGGGGACTCTG-CCGATCCCCGGCTTGTGCATCCCACCCCTCTGGCGGGC-
777 GA-CAGCACGCAGAGGGGGAC-CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC--GCT
* * *
17756007 TGAGCGCCTGCACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC--TGT--
838 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
17756065 -C-TA---AG---A-T-C-G---AA-A-CGGA-C---CGAGTGTTGCGGCAGCACATGCTGGGCT
1 GCATACGGAGTTCATTCCAGTCTAAGATCGGATCGGACGAGGGTTACGACAGCACATGCTGGGCT
* * * * * * *
17756110 CGGGCATGTGCTGGTACCATAATTTTCTTCGTCGGGGTACCATCG-TCGGAGTATCGTCGGAGAA
66 CGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGCCGGAGAA
* * * *
17756174 CCCGACC-AGCGGTATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTG
130 CCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGGTGTGCGCACATGATGTG
* **
17756237 CGATGGGTGCTGGCACTTGGCCCTTATATTCACCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
*
17756302 ACCCCCTTAAAGAGCATTTGCGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
17756367 GGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTGTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
17756431 TGCATGCCAACAAAAATACAAGGATCATGTCTACTAAGTTTGGGGCCAAAAATCCTTTCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * *
17756496 ATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
17756561 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGGCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
17756626 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAATCACCCTATCGATCCACAGCTTACG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * * * * *
17756691 CATCCCGTCTCTCTGGCAGTTGTAGTGCCCGCCCGTCCGGCCACCCACTCGTTTCGTTGGTTAGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC-CCCGCCCGCTCGTTTCGTCGGTTGGC
* ** * * *
17756756 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACAAGACCGAGGGTTGTGACAGTAGGATC
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATC
* * * * ** * *
17756821 AACAGCATGCAGAGGGGGACTCGATCGATCCCCGGCTTATGCATACCGACCCTCTGGC-CTGCTG
777 GACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCGCT--TG
* * * * *
17756885 AACGCCCGCACGCTCATTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
840 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
17756945 GCATACAGAGTTCATTCCCGGTCTAAGATCAGACCGGACTGAGGGTTACGACAGTACATGCTGGG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGATCGGAC-GAGGGTTACGACAGCACATGCTGGG
* * * **
17757010 CTCGAGCATGTGCTGTTGCTGCATTTTTCTTCGTCATGGCACCAT--C----G--T---CGGAGA
64 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGA
* * * * * * *
17757064 ACCTGACCGGCGGTATTAGGCTTCCGACGATC-GGGGGTC-CGAGGGGTGTACGCACATGATGTG
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGGTGTGCGCACATGATGTG
* * * *
17757127 CGATTGGTGCTGGTAGTTGGCCCTTATATTGGCCCCTTAGCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* *
17757192 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
17757257 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
17757322 TGCATTCCAAAAAAAAAAAACAAGGATCACGTCTACCAGGTTTTGGGCCAAAACTCTTTCCAAAA
389 TGCATGCC--AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * *
17757387 AAATTTTAAAAAATCCCGAACCGTAAGAAGTTTCAAAAATCATGAAAAATAGAAAACCAGTCATC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
17757452 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
17757517 CATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *** * * *
17757582 CGCATCCCATCACTCTGGCCGATATAGTGCCCG-CCG-GCCCGTCCGCTTGTTTCGTCGGTTGGC
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * * *
17757645 TTAGGTATACGAAGTTCATTCCCATTCTAAGGTCAGA-TCAGACTGAGGGTTACGGCAGCAGGAT
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGGCAGCAGGAT
* * * ** * *
17757709 CGGCAGCACCCAGA-AGGGATGC-AGCCGATCCCCGACTTGTGCATCCCGCCCCTCTGGTCGGC-
776 CGACAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-C-GCT
* * * *
17757771 TAAGCGCCCGCACGCTCGTTTCATTGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAA
838 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
17757833 GCATATGGAGTTCATTCCTAGTCTAAGATTGGATCGGACTGAGGTTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGGATCGGAC-GAGGGTTACGACAGCACATGCTGGG
* * *
17757898 CTCGAGCATGTGCTGGTGCCGTATTTTTTTTTGTCGAGGCACCAT--C----GC-T----GGAGA
64 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGA
* * * ** * *
17757952 ACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCTAGGGGGGTGTACGCACATGATGCG
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGGTGTGCGCACATGATGTG
* * *
17758017 CGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCTTATCTCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
*
17758082 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* ** *
17758147 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTATTTGAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
17758212 TGCATCCCAACAAAGATACAATGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * *
17758276 AGTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
17758340 GCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGATTTTACATGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
17758405 TTGGCATGCATAAATAAGAAGATGTGCCCAAACCCACCTACCACCATATCGATACACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
17758470 CATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCG--CCCGCCCACTCGTTTCGTCGGTTGGTTT
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * *
17758533 GGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGA--GTTGTGGCAGCAGGATCGA
714 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * ** *
17758596 CAGCTCACAGAGGGGGTCTCGACCGATCCTTGCCTTGCGCATCCCGCCCCTCTGGCTGGC-TGAG
779 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC--GCTTGAG
* * * *
17758660 TGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCGAA
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
17758718 G-AT-C-G-G---A---C---C--AGA-C----C-GA-G-GGTTTTA-G-TAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCAGTCTAAGATCGGATCGGACGAGG-GTTACGACAGCACATGCTGGGC
* * * ** *
17758758 TCGAGCATGTGCTGGTACCATTTTTTTCTTCACCGGGGCACCATCG-TCGGAGCATCGCCAGAGA
65 TCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGCCGGAGA
* * *
17758822 ACCTGACCGGCGGCATTGGGGTACCGACGGCATTGGGGTTCTGGCGATCGGGGGGCCGAGGGGGG
129 ACCTGACCGACGGCATTGGGGTTCCGAC-G-A-TCGGG----GG-G-TC-----G--G-GGGGGG
* *
17758887 TGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATC
177 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
17758952 AAACCTTGAGAACTGACACCCGCTTAAAGAGCATTTCAGATTTTATAGGTTTGCTGCCAGTAGCC
242 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC
17759017 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
307 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
17759082 TTAGCTGAATTTTTTTTTGCAT-CCAAGAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
372 TTAGCTGAATTTTTTTGTGCATGCCAA-CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * *
17759146 AAAACTCCTTCCAAACAAATTTTAAAAAATCACAAACCGTAAAAAGTTTCAAAAATCATGAAAAA
436 AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAA
*
17759211 TAGAAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
501 TAG-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
17759276 ACAAGCCATAAAAATGACATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
565 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * * *
17759341 TATCGATCCATGGGTTACGCATCCCATCTCTCTGGCCAGTGTAGTGCCC-ACCG---CCG---GC
630 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCCCGC
* * * *
17759399 TTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGG
695 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGG
** * * * * * *
17759464 GTTGCGATAGCAGGATGGGCAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGTGCATCCTG
760 GTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
* * * *
17759529 TCCCTGTGGTCGGC-TGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
825 CCCCTCTGG-C-GCTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
*
17759593 TTCCAAGTCTAA
888 TTCCCAGTCTAA
* * * ** *
17759605 GCATATGGAGTTCATTCCCAATCTAAGATCGGATCAGACTGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGATCGGAC-GAGGGTTACGACAGCACATGCTGGG
** * ** * * *
17759670 CT-GAGCATGTGCTGGTGCCGCGTTTTACTTCACCGGGGCACTATC-ATCGGAGCATCGTCGGAG
64 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGCCGGAG
* * *
17759733 AACTTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGGCCGGAGAGGGGGTGTGCGCACATGA
128 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGTCGG-G-GGGGGTGTGCGCACATGA
*
17759798 TATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
17759863 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
17759928 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACGTCGAGTTTTTATCTAAATTTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
*** * * * *
17759993 TTTACCCATGCCAACGAAAATACAAGGATCATGTCTACAAATTTTGGGGCCAAAACTCCTTCC-A
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* * *
17760057 AAAAAGTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCG
450 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
17760122 TCTTGCCATTAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** ** **
17760187 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACGGTATCGAGACACGGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
17760252 TGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCCCGACCGTCCGCCCGTTCGTTTCGTCGGT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC-CCCGCCCGCTCGTTTCGTCGGT
* * *
17760317 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGTAG
708 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAG
* * * * * *
17760382 GATCTG-CAACACGCAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCACCCATCTTGCCG
773 GATC-GACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC-TGGC-
* * * *
17760446 GC-TGAGCGCCTGCACGCTCGTTTCGTGGGCTGAATTAGGCATACGGAGTTCATTTCCAGTCTAA
835 GCTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
17760510 G-AT-C-G-G---A--CC-G-----GA-C---T-----GAGTGTTGCGACAGCACATGCTGGGCT
1 GCATACGGAGTTCATTCCAGTCTAAGATCGGATCGGACGAGGGTTACGACAGCACATGCTGGGCT
* * * * *
17760551 CGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACTGGAGCTTTGTCGGAGAAC
66 CGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGAAC
* * * * *
17760616 CTGACCGACGGCATTGAGGTTCCGGCGATCGTGGGGGT-TGGGGGGGTGTGCGCTCATGATGTCC
131 CTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGTCGGGGGGGGTGTGCGCACATGATGTGC
* * *
17760680 GGTGGGTGGTGGTGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTTGAGAACTCAC
195 GATGGGTGCTGGT-ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * *
17760745 GCGCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * *
17760810 GGGGACACTTTTCTCGAGTGGACAC-AAATCTTGTACACTTCGCGTTTTTAGCTGATTTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * ** *
17760874 CGCATGCCAACAAAAATACAAGGATCACGTCTTCTAAGTTTGGCACCAAAACTCCATCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
** * ** *
17760939 ATTTTAAAAAATCTTGAACCGTAAAACA-TTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 ATTTTAAAAAATCCCGAACCGCAAAA-AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
17761003 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
17761068 ATCGG-ATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGACTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
17761132 GCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCATCCGCCCGCCCGCTCATTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-GCC-CCCGCCCGCTCGTTTCGTCGGTTGG
* *
17761197 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCA
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCA
17761258 CATGTTGGGC
Statistics
Matches: 6115, Mismatches: 688, Indels: 381
0.85 0.10 0.05
Matches are distributed among these distances:
859 50 0.01
860 3 0.00
861 5 0.00
863 2 0.00
864 1 0.00
865 2 0.00
866 1 0.00
869 3 0.00
870 34 0.01
871 160 0.03
872 310 0.05
873 12 0.00
874 97 0.02
875 4 0.00
876 169 0.03
877 284 0.05
878 264 0.04
879 32 0.01
880 84 0.01
881 8 0.00
882 135 0.02
883 2 0.00
884 29 0.00
885 152 0.02
886 260 0.04
887 394 0.06
888 284 0.05
889 131 0.02
890 525 0.09
891 102 0.02
892 476 0.08
893 256 0.04
894 4 0.00
895 5 0.00
896 158 0.03
897 188 0.03
898 262 0.04
899 7 0.00
900 50 0.01
901 210 0.03
902 531 0.09
903 9 0.00
904 131 0.02
905 177 0.03
906 5 0.00
908 1 0.00
909 3 0.00
910 4 0.00
911 4 0.00
912 80 0.01
913 15 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGATCGGACGAGGGTTACGACAGCACATGCTGGGCT
CGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCGCTTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17756949 original size:26 final size:26
Alignment explanation
Indices: 17756919--17756971 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17756909 GTTGACTTAG
* *
17756919 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17756945 GCATACAGAGTTCATTCCCGGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17756971 G
1 G
17756972 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17758852 original size:17 final size:17
Alignment explanation
Indices: 17758827--17758860 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
17758817 AGAGAACCTG
*
17758827 ACCGGCGGCATTGGGGT
1 ACCGACGGCATTGGGGT
17758844 ACCGACGGCATTGGGGT
1 ACCGACGGCATTGGGGT
17758861 TCTGGCGATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.15, C:0.24, G:0.44, T:0.18
Consensus pattern (17 bp):
ACCGACGGCATTGGGGT
Found at i:17759105 original size:887 final size:879
Alignment explanation
Indices: 17755169--17761257 Score: 6908
Period size: 890 Copynumber: 6.9 Consensus size: 879
17755159 CCCAGTCTAA
* * ** * * *
17755169 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCAGACC-ACGGGTTACAACAGTACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGGTTTTAGCAGCACATGCTGG
* * **
17755233 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAG
65 GCTCGAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCTC-GGAGCATCGTC-GAG
* * * * * * *
17755298 AACCTGACCGACGACTTTGGGGTTCCGGCGATTGAG-GGAGTC-----G-G-GGGGGGTGTGGGC
128 AACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGTGGCGTCGGGGGGCGAGGGGGGTGTGCGC
* *
17755355 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTC
193 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT
* *
17755420 GAGAACTCACACCTCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAG
258 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAG
17755485 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
323 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * *
17755550 AATTTTTTTATGCATGCCAACAAGAATAGAAGGATCATGTCTAACAAGTTTGGGGCCAAAACTCC
388 AATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * *
17755615 TTCCAAAAAAATTTTAAAAAATCTCGAATCGCAAAAAGTTTTC-AAAACCGTGAAAAATAGAAAA
453 TTCC-AAAAAATTTTAAAAAATCTCGAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAA
** *
17755679 CTCGT-GTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
516 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
17755743 TAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
581 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* *
17755808 CACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCACGCCCGCCCGCCCGCTCGTTTCGTC
646 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * *
17755873 GATTGGCTTAGGCATACGGAGTTCATTCGCAGTCTAAGATCAGACCGGA-TAGAGGGTTGTGGCA
711 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACT-GA-GGTTGCGGCA
* * * *
17755937 GCAGGATC-AGTAGCACGTAGAGGGGGACTCTG-CCGATCCCCGGCTTGTGCATCCCACCCCTCT
774 GCAGGATCGA-CAGCACGCAGAGGGGGAC-CCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCT
* * *
17756000 GGCGGGCTGAGCGCCTGCACTCTCGTTTCGTGGGTTGACTTAG
837 GGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * ***
17756043 GCATACGGAGTTCATTCCCTGTCTAAGATCGAAACGGACCGAGTGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTTTAGCAGCACATGCTGGG
* * * * *
17756108 CTCGGGCATGTGCTGGTACCATAATTTTCTTCGTCGGGGTACCATCGTCGGAGTATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATC-TCGGAGCATCGTC-GAGA
* * * *
17756173 ACCCGACCAGCGGTATTGGGGTTCCGACGA-----T--CG--GGGGGGC-CGGGGGGTGTGCGCA
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGTGGCGTCGGGGGGCGAGGGGGGTGTGCGCA
* **
17756228 CATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTCACCCCCTATCCCTCATCAAACCTTG
194 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
*
17756293 AGAACTCACACCCCCTTAAAGAGCATTTGCGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGT
259 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
17756358 GTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTGTAGCTGA
324 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
17756422 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACTAAGTTTGGGGCCAAAAATCCT
389 ATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-
* * *
17756487 TTCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATG
453 TTCCAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* *
17756552 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGGCATA
518 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
17756617 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAATCACCCTATCGATCCA
583 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * ** * *
17756682 CAGCTTACGCATCCCGTCTCTCTGGCAGTTGTAGTGCCCGCCCGTCCGGCCACCCACTCGTTTCG
648 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C--CCGCCCGCTCGTTTCG
* * * ** * * *
17756747 TTGGTTAGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACAAGACCGAGGGTTGTGAC
709 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGA-GGTTGCGGC
* * * * * * * *
17756812 AGTAGGATCAACAGCATGCAGAGGGGGACTCGATCGATCCCCGGCTTATGCATACCGACCCTCTG
773 AGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTG
* * * *
17756877 GCCT-GCTGAACGCCCGCACGCTCATTTCATGAGTTGACTTAG
838 G-CTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
17756919 GCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCGGTCTAAGATCAGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A--------C------CAGACC-GA-
* * * *** **
17756984 TGAGG-GTTACGACAGTACATGCTGGGCTCGAGCATGTGCTGTTGCTGCATTTTTCTTCGTCATG
43 -G-GGTTTTA-G-CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGG
* * * *
17757048 GCACCA--TC---G--TCG--GAGAACCTGACCGGCGGTATTAGGCTTCCGACGA-TCGG-GG-G
104 GCACCATCTCGGAGCATCGTCGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGTGGCG
* * *
17757101 TC------CGA--GGGGTGTACGCACATGATGTGCGATTGGTGCTGGTAGTTGGCCCTTATATTG
169 TCGGGGGGCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
17757158 GCCCCTTAGCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
234 GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAG
*
17757223 GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
299 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * *
17757288 TTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATTCCAAAAAAAAAAAACAAGGATCACG
364 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC--AACAAAAATACAAGGATCACG
* * * * * *
17757353 TCTACCAGGTTTTGGGCCAAAACTCTTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAGAAGT
427 TCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGT
* *
17757418 TTCAAAAATCATGAAAAATAGAAAACCAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
491 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*
17757483 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCT
556 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * * ***
17757548 AAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCATCACTCTGGCCGATATAGTGCC
621 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* * * * * * *
17757613 CGCCGGCCCGTCCGCTTGTTTCGTCGGTTGGCTTAGGTATACGAAGTTCATTCCCATTCTAAGGT
686 CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * **
17757678 CAGA-TCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCACCCAGA-AGGGATGC-AGCCGATCC
751 CAGACT-GGACTGA-GGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CCGATCC
* * * *
17757740 CCGACTTGTGCATCCCGCCCCTCTGG-TCGGCTAAGCGCCCGCACGCTCGTTTCATTGGTTGACT
813 CCGGCTTGTGCATCCCGCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
17757804 TAG
877 TAG
* * * *
17757807 GTATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATTGGATCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG---ATCG-G---A--CC-AGAC--CGA---G---GG--
* * * *
17757872 TGAGGTTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTTTTTGTCGAGG
46 T----TTTA--GCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGG
*
17757937 CACCA--TC---GC-T-G--GAGAACCTGACCGGCGGCATTAGGGTTCCGACGA-----T--CG-
105 CACCATCTCGGAGCATCGTCGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGTGGCGT
* * * *
17757985 -GGGGGGCTAGGGGGGTGTACGCACATGATGCGCGATGGGTGCTGGTACTTAGCCCTTATATTGG
170 CGGGGGGCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
17758049 CCCCTTATCTCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
235 CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGG
17758114 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
300 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* ** * * *
17758179 TGTACACTTTGAGTTTTTATTTGAATTTTTTTATGCATCCCAACAAAGATACAATGATCACGTCT
365 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCT
* *
17758244 ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAGTTTAAAAAATC-CGAACCGTAAAAAGTTTCA
430 ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCA
* * *
17758308 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACC
495 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * * *
17758373 ATTGTATGATTTTACATGCCATAAAAATGGCATTGGCATGCATAAATAAGAAGATGTGCCCAAAC
560 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * *
17758438 CCACCTACCACCATATCGATACACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCC
625 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * * *
17758503 CGCCCGCCCACTCGTTTCGTCGGTTGGTTTGGGCATATGGAGTTCATTCCCAGTCTAAGATCAGA
690 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * ** *
17758568 CTGGACTGA-GTTGTGGCAGCAGGATCGACAGCTCACAGAGGGGGTCTCGACCGATCCTTGCCTT
755 CTGGACTGAGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* *
17758632 GCGCATCCCGCCCCTCTGGCTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
820 GTGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
17758692 GCATATGGAGTTCATTCCCAATCGAAGATCGGACCAGACCGAGGGTTTTAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTTTAGCAGCACATGCTGGG
* * ** *
17758757 CTCGAGCATGTGCTGGTACCATTTTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCAGAGA
66 CTCGAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATC-TCGGAGCATCGTC-GAGA
*
17758822 ACCTGACCGGCGGCATTGGGGTACCGACGGCATTGGGGTTCTGGCGATCGGGGGGCCGAGGGGGG
129 ACCTGACCGGCGGCATTGGGGTTCCGAC-G-ATT-GGG---TGGCG-TCGGGGGG-CGAGGGGGG
* *
17758887 TGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATC
186 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
17758952 AAACCTTGAGAACTGACACCCGCTTAAAGAGCATTTCAGATTTTATAGGTTTGCTGCCAGTAGCC
251 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC
17759017 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
316 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
17759082 TTAGCTGAATTTTTTTTTGCAT-CCAAGAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
381 TTAGCTGAATTTTTTTATGCATGCCAA-CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
17759146 AAAACTCCTTCCAAACAAATTTTAAAAAATCACAAACCGTAAAAAGTTTCAAAAATCATGAAAAA
445 AAAACTCCTTCCAAA-AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAA
*
17759211 TAGAAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
509 TAG-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
17759276 ACAAGCCATAAAAATGACATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
573 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * * * *
17759341 TATCGATCCATGGGTTACGCATCCCATCTCTCTGGCCAGTGTAGTGCCC-ACCG-CCG---GCTT
638 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTC
* *
17759401 GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGT
703 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGA-GGT
** * * * * * *
17759466 TGCGATAGCAGGATGGGCAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGTGCATCCTGTC
767 TGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCC
* *
17759531 CCTGTGG-TCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
832 CCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----T--AG
* * *
17759587 AGTTCATTCCAAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGATCAGACTGAGGGTT
1 -G-------C-A---T-A-C----GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
* * *** * ** *
17759652 GTGGCAGCACATGCTGGGCT-GAGCATGTGCTGGTGCCGCGTTTTACTTCACCGGGGCACTATCA
48 TTAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATC-
* * * * **
17759716 TCGGAGCATCGTCGGAGAACTTGACCGACGGTATTGGGGTTCCGACGA-TCGG-GG-G--GGCCG
112 TCGGAGCATCGTC-GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGTGGCGTCGGGGG
* *
17759776 GAGA-GGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
176 GCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
17759840 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
241 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
17759905 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
306 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * ** * * * *
17759970 CGTCGAGTTTTTATCTAAATTTTTTTACCCATGCCAACGAAAATACAAGGATCATGTCTACAAAT
371 CTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
*
17760035 TTTGGGGCCAAAACTCCTTCCAAAAAAGTTTAAAAAATC-CAGAACCGCAAAAAGTTTCAAAAAT
436 TTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAAT
* * *
17760099 CTTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGTTTAAGGGACCATTGT
500 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* **
17760164 ATGAATTTACAAGCCATGAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
565 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
** ** * *
17760229 TACCACGGTATCGAGACACGGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCCCGACC
630 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C
* *
17760294 GTCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
693 --CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * *
17760359 TGGA-TCGAGGGTTGCGGCAGTAGGATCTG-CAACACGCAGAGGGGGACCCGACCGATCCCCGAC
756 TGGACT-GA-GGTTGCGGCAGCAGGATC-GACAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
** * * * * * * *
17760422 TTACGCATCCCACCCATCTTGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGCTGAATTAG
818 TTGTGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * **
17760484 GCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGACTGAGTG-TTGCGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTTTAG-CAGCACATGCTGG
* * * * *
17760548 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACTGGAGCTTTGTCGGAG
65 GCTCGAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCTC-GGAGCATCGTC-GAG
* * * **
17760613 AACCTGACCGACGGCATTGAGGTTCCGGCGA-----T--CGT-GGGGGTTG-GGGGGGTGTGCGC
128 AACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGTGGCGTCGGGGGGCGAGGGGGGTGTGCGC
* * * * *
17760669 TCATGATGTCCGGTGGGTGGTGGTGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTT
193 ACATGATGTGCGATGGGTGCTGGT-ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
17760734 TGAGAACTCACGCGCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGGCAGTAGCCATTAAA
257 TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAA
* * * * *
17760799 GTGTCTGAAATGGGGACACTTTTCTCGAGTGGACAC-AAATCTTGTACACTTCGCGTTTTTAGCT
322 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* ** * * **
17760863 GATTTTTTTTGCGCATGCCAACAAAAATACAAGGATCACGTCTTCTAAGTTTGGCACCAAAACTC
387 GAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * ** *
17760928 CATCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAACA-TTTTGAAAATCGTGAAAAATAGAAA
452 CTTCC-AAAAAATTTTAAAAAATCTCGAACCGCAAAA-AGTTTCAAAAATCATGAAAAATAGAAA
*
17760992 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
515 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
17761057 ATAAAAATGGCATCGG-ATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
580 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
17761121 CTACGACTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCATCCGCCCGCCCGCTCATT
645 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C--CCGCCCGCCCGCTCGTT
* * *
17761186 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTAC
706 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGA-GGTTGC
17761251 GGCAGCA
770 GGCAGCA
17761258 CATGTTGGGC
Statistics
Matches: 4486, Mismatches: 542, Indels: 371
0.83 0.10 0.07
Matches are distributed among these distances:
859 50 0.01
861 4 0.00
862 2 0.00
865 3 0.00
866 1 0.00
867 3 0.00
868 1 0.00
870 35 0.01
871 157 0.03
872 313 0.07
873 2 0.00
874 130 0.03
875 6 0.00
876 181 0.04
877 285 0.06
878 264 0.06
879 56 0.01
880 76 0.02
881 7 0.00
882 5 0.00
883 4 0.00
884 27 0.01
885 150 0.03
886 270 0.06
887 368 0.08
888 252 0.06
889 123 0.03
890 517 0.12
891 92 0.02
892 3 0.00
893 256 0.06
894 3 0.00
895 3 0.00
896 159 0.04
897 56 0.01
898 260 0.06
899 9 0.00
900 5 0.00
901 2 0.00
902 50 0.01
903 2 0.00
904 5 0.00
905 149 0.03
906 1 0.00
907 1 0.00
908 3 0.00
909 1 0.00
910 1 0.00
911 1 0.00
912 77 0.02
913 55 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (879 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTTTAGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCTCGGAGCATCGTCGAGAAC
CTGACCGGCGGCATTGGGGTTCCGACGATTGGGTGGCGTCGGGGGGCGAGGGGGGTGTGCGCACA
TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
AACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGT
CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
CAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGTTGCGGCAGCAGGAT
CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCTGGCTG
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:17762144 original size:720 final size:718
Alignment explanation
Indices: 17760480--17762670 Score: 3295
Period size: 720 Copynumber: 3.0 Consensus size: 718
17760470 GTGGGCTGAA
* * * * * * *
17760480 TTAGGCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGACTGAGTGTTGCGACAGCACATGC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGT
* * * * * * ** * *
17760545 TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACTGGAGCTTTG-TC
66 TGGGCTCGGGCATGTGCTGGTGCAGCATTTATCTTTGTCGAGGCACCATCGCCAGAGCATCGCT-
* * * * * *** *
17760609 GGAGAACCTGACCGACGGCATTGAGGTTCCGGCGATC-GTGGGGGTTGGGGGGGTGTGCGCTCAT
130 GGAGAACCTGACCGGCGGTATTGGGGTTCCGGAGATCGGGGGGGGCCAGGAGGGTGTGCGCTCAT
* * * *
17760673 GATGTCCGGTGGGTGGTGGTGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTTGAG
195 GATGTGCGATGGGTGCTGGT-ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
* * *
17760738 AACTCACGCGCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGGCAGTAGCCATTAAAGTGT
259 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * * * *
17760803 CTGAAATGGGGACACTTTTCTCGAGTGGACAC-AAATCTTGTACACTTCGCGTTTTTAGCTGATT
324 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * ** *
17760867 TTTTTTGCGCATGCCAACAAAAATACAAGGATCACGTCTTCTAAGTTTGGCACCAAAACTCCATC
389 TTTTTT-CGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTC
** *
17760932 CAAAAAAATTTTAAAAAATCTTGAACCGTAAAACA-TTTTGAAAATCGTGAAAAATAGAAAACGA
453 CAAAAAAATTTTAAAAAATCCAGAACCGTAAAA-AGTTTTAAAAATCGTGAAAAATAGAAAACGA
* *
17760996 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
517 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGA
* ** *
17761061 AAATGGCATCGG-ATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTAC
582 AAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAAC-AC
*
17761125 GACTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCC-ATCCGCCCGCCCGCTCATTTCG
646 GACTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGA-CCGCCCGCCCGTTCATTTCG
17761189 TCGGTTGGC
710 TCGGTTGGC
17761198 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGT
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGT
17761263 TGGGCTCGGGCATGTGCTGGTGCAGCATTTATCTTTGTCGAGGCACCATCGCCAGAGCATCGCTG
66 TGGGCTCGGGCATGTGCTGGTGCAGCATTTATCTTTGTCGAGGCACCATCGCCAGAGCATCGCTG
17761328 GAGAACCTGACCGGCGGTATTGGGGTTCCGGAGATCGGGGGGGGCCAGGAGGGTGTGCGCTCATG
131 GAGAACCTGACCGGCGGTATTGGGGTTCCGGAGATCGGGGGGGGCCAGGAGGGTGTGCGCTCATG
17761393 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
196 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
17761458 CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
261 CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
17761523 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACGTCGAGTTTTTATCTAAATTT
326 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
17761588 TTTTACCCATGCCAACGAAAATACAAGGATCATGTCTACAAATTTTGGGGCCAAAACTCCTTCC-
391 TTTT-CGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCA
* * * * *
17761652 AAAAAAGTTTAAAAAATCCAGAACTGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTC
455 AAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
* *
17761717 GTCTTGCCATTAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAA
520 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAA
* ** *
17761782 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACGGTATCGAGACACGGC
585 TGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA-ACACGAC
* * *
17761847 TTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCCCGACCGTCCGCCCGTTCGTTTCGTCGG
649 TTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGACCGCCCGCCCGTTCATTTCGTCGG
17761912 TTGGC
714 TTGGC
17761917 TTAGGCATACGGAGTTCATTCCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATG
1 TTAGGCATACGGAGTTCATT-CCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATG
17761982 TTGGGCTCGGGCATGTGCTGGTGCAGCATTTATCTTTGTCGAGGCACCATCGCCAGAGCATCGCT
65 TTGGGCTCGGGCATGTGCTGGTGCAGCATTTATCTTTGTCGAGGCACCATCGCCAGAGCATCGCT
17762047 GGAGAACCTGACCGGCGGTATTGGGGTTCCGGAGATCGGGGGGGGCCAGGAGGGTGTGCGCTCAT
130 GGAGAACCTGACCGGCGGTATTGGGGTTCCGGAGATCGGGGGGGGCCAGGAGGGTGTGCGCTCAT
*
17762112 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
195 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
* *
17762177 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTC
260 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * * *
17762242 TGAAATGGGGACACTTTTTTCAAATGGTGACAAAAACTTATACACTTTGATTTTTTAGCTGAATT
325 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
17762307 TTTTTTGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
390 TTTTTCGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCA
* *
17762372 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGGAAACGAGTC
455 AAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
* *
17762437 GTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCTA-GAAAA
520 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATG-AAA
* * **
17762501 ATGGCATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACCT
584 ATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA-ACACGA
* * * *
17762566 CTTGCGCATCCCGTCTCTCTGGCCGGCGT-GCTGCCCGCCTGCCCGGCCGCCCGTTCATTTCGTC
648 CTTGCGCATCCCGTCTCTCTGGTCGGCGTAG-TGCCCGCCCGACCGCCCGCCCGTTCATTTCGTC
*
17762630 GATTAGG-
712 GGTT-GGC
17762637 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
17762671 AGACCAGACC
Statistics
Matches: 1341, Mismatches: 120, Indels: 23
0.90 0.08 0.02
Matches are distributed among these distances:
717 1 0.00
718 400 0.30
719 321 0.24
720 617 0.46
721 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (718 bp):
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGT
TGGGCTCGGGCATGTGCTGGTGCAGCATTTATCTTTGTCGAGGCACCATCGCCAGAGCATCGCTG
GAGAACCTGACCGGCGGTATTGGGGTTCCGGAGATCGGGGGGGGCCAGGAGGGTGTGCGCTCATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
TTTTCGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCAA
AAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAAT
GGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACACGACTT
GCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGACCGCCCGCCCGTTCATTTCGTCGGTT
GGC
Found at i:17762830 original size:26 final size:26
Alignment explanation
Indices: 17762800--17762852 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17762790 GTTGACTTAG
17762800 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
17762826 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17762852 G
1 G
17762853 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17763736 original size:26 final size:26
Alignment explanation
Indices: 17763700--17763752 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17763690 GTCGACTTAG
*
17763700 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17763726 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17763752 G
1 G
17763753 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17766299 original size:26 final size:26
Alignment explanation
Indices: 17766269--17766321 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17766259 GTTGACTTAG
17766269 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17766295 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17766321 G
1 G
17766322 TTCAAACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17766758 original size:903 final size:899
Alignment explanation
Indices: 17764642--17766905 Score: 3242
Period size: 903 Copynumber: 2.5 Consensus size: 899
17764632 CGCATACGGA
* * * * *
17764642 GTTCCGACGAACGGGGGGCCGGGGGGGTGTGCGCACATGATGTACAATGGGTGCTGGTAATTGGC
1 GTTCCGATGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
17764707 CCTTAAATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
66 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
17764772 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACATTTTTTTCAAATGG
131 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
17764837 TGACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAA
196 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTTTGCATGCCAACAAAAATACAA
* * * * * *
17764902 GGATCACGTATACCAAGTTTAGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAATCA
261 GGATCACGTATACCAAGTTTGGGGCCAAAAATCTTTCCGAAAAAATTTTAAAAAATCCCGAATCG
* * *
17764967 TAAAAAGTTTTCGAAAATCGTGAAAAATAGAAAACGCGTCGTCTTGCCATGAAACTTCATGTGAA
326 TAAAAAG-TTTCGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * *
17765032 GGCTTAAAGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAAAAATATGAA
390 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAA
*
17765097 GATGTGCCTAAACCCACCTACCACCCTACCCATCCTCCGCTTGCGCATCCCGTCTCTCTGGCCGA
455 GATGTGCCTAAACCCACCTACCACCCTACCAATCCTCCGCTTGCGCATCCCGTCTCTCTGGCCGA
* * ** * *
17765162 CGTAGTGCCCGCCTGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
520 CATAGTGCCCACCCACCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATAAGGAGTTCATTCCCA
* *** * * *
17765227 GTGTAAGATTGGACCGGATCGAGGGTTGCGGCTATAGGATCAGCAGCACACAGAGGAGGACCCGA
585 GTCTAAGATCAAACCGGACCGAGGGTTGCGGATACAGGATCAGCAGCACACAGAGGAGGACCCGA
*** *** * * **
17765292 CCGATTTTCGGCTTGCGCATCCCGCCCCGCTGGTTGGCTGAGCGCCCGCACGCTCGTTTTGTGGG
650 CCGATCCCCGGCTTGCGCATCCCGCCCCGCTGGCCAGCTAAGCGCCCCCACGCTCGTTTCATGGG
*
17765357 TTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCAATCCCAATATAAGATC
715 TTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAATCCCAATATAAGATC
* * *
17765422 AGACTCGACCGAGGGTTACGGCAGCACATGCTGGCCTCGGGCATGTGCTGGTGCTGCATTTTTCT
780 AAACTCGACCGAGGGTTACGGCAGCACATGCTGGCCTCGAGAATGTGCTGGTGCTGCATTTTTCT
*
17765487 TCGCCAAGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTAGC
845 TCGCCAAGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGGCAGCATTAGC
*
17765542 GTTCCGATGATCGGGGGGGCC-GGGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGG
1 GTTCCGATGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
17765606 CCCTTATATTGGCCCCCTAT-CCTCATCAAA-CTCGAGAACTCACACCCCCTTAAAAGAGCATTT
65 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAAGAGCATTT
* **
17765669 GAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAACCGGGACACTTTTTTCAAAT
129 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
17765734 GGTCACAAAATCTTGTGCACTTCGAGTTTTTGGCTGAATT-TTTTTGTGCATGCCAACAAAAATA
194 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTT-TGCATGCCAACAAAAATA
* * *
17765798 CAAGGATCGCGTCTACCAAGTTTGGGGCCAAAAAT-TCTTCC-AAAAATATTCTTAAAAAATCTC
258 CAAGGATCACGTATACCAAGTTTGGGGCCAAAAATCT-TTCCGAAAAA-ATT-TTAAAAAATCCC
* * *
17765861 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCAC
320 GAATCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
* * *
17765926 GTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAGAATGGCATTGGCATGTAGAAAT
385 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAAT
* * *
17765991 ATGAAGATGTGCCTTAACCCACCTACCACCCTATCAATCCAT-GGCTTGCGCATCCCGTCTCTCT
450 ATGAAGATGTGCCTAAACCCACCTACCACCCTACCAATCC-TCCGCTTGCGCATCCCGTCTCTCT
* * * * * *
17766055 GGCCGGCATGGTTCCCACCCACCCGTCTGCCTGTTCGTTTCATCGGTTGGCTTAGGCATAAGTAG
514 GGCCGACATAGTGCCCACCCACCCG-C--CC-GCTCATTTCATCGGTTGGCTTAGGCATAAGGAG
* * * *
17766120 TTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTG-TGATACCAGGAT-TGACAGCACGCAT
575 TTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGATA-CAGGATCAG-CAGCACACAG
* ** * * * *
17766183 AGGGGGACCCGGTCGATCCCCGGCTTGGGCATCCCGCCCCTCTGGCCAGCTAAGCGCCCCCCCGT
638 AGGAGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCGCTGGCCAGCTAAGCGCCCCCACGC
* * *
17766248 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
703 TCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAATCC
* * * **
17766313 CAGTCTAAGTTCAAAC-CGGACCGAGGGTTGTGGCAGCACATGCTGGCCTCGAGAATGTGCTGGT
768 CAATATAAGATCAAACTC-GACCGAGGGTTACGGCAGCACATGCTGGCCTCGAGAATGTGCTGGT
* ** ** *
17766377 G-TGGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTC-CCGGAGAACCTGACCGGCAGCA
832 GCT-GCATTTTTCTTCGCCAAGGCACCATCACCGGAGCA-TCGCCAGAGAACCTGACCGGCAGCA
17766440 TTGAG-
895 TT-AGC
**
17766445 GTTCC-AGTGATCGGGGGGTTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
1 GTTCCGA-TGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
17766509 CCCTTATACTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTG
65 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
17766574 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
130 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
17766639 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTTTGCATGCCAAAAAAAATACA
195 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTTTGCATGCCAACAAAAATACA
* * *
17766704 GGGATCATGTATACCATGTTTGGGGCCAAAAATCTTTCCGAAAAAATTTTAAAAAATCCCGAATC
260 AGGATCACGTATACCAAGTTTGGGGCCAAAAATCTTTCCGAAAAAATTTTAAAAAATCCCGAATC
* *
17766769 GTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAA
325 GTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
17766834 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
390 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAA
17766899 GATGTGC
455 GATGTGC
17766906 TGGTGCCACC
Statistics
Matches: 1213, Mismatches: 127, Indels: 45
0.88 0.09 0.03
Matches are distributed among these distances:
898 29 0.02
899 354 0.29
900 91 0.08
901 8 0.01
902 15 0.01
903 506 0.42
904 179 0.15
905 31 0.03
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (899 bp):
GTTCCGATGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTTTGCATGCCAACAAAAATACAA
GGATCACGTATACCAAGTTTGGGGCCAAAAATCTTTCCGAAAAAATTTTAAAAAATCCCGAATCG
TAAAAAGTTTCGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTACCAATCCTCCGCTTGCGCATCCCGTCTCTCTGGCCGAC
ATAGTGCCCACCCACCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATAAGGAGTTCATTCCCAG
TCTAAGATCAAACCGGACCGAGGGTTGCGGATACAGGATCAGCAGCACACAGAGGAGGACCCGAC
CGATCCCCGGCTTGCGCATCCCGCCCCGCTGGCCAGCTAAGCGCCCCCACGCTCGTTTCATGGGT
TAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAATCCCAATATAAGATCA
AACTCGACCGAGGGTTACGGCAGCACATGCTGGCCTCGAGAATGTGCTGGTGCTGCATTTTTCTT
CGCCAAGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGGCAGCATTAGC
Found at i:17767691 original size:26 final size:26
Alignment explanation
Indices: 17767661--17767711 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17767651 TGACTTGGGT
17767661 ATACGAAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
* *
17767687 ATACGGAGTTCATTCTCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
17767712 ATTAGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:17769062 original size:856 final size:862
Alignment explanation
Indices: 17767685--17769306 Score: 2211
Period size: 856 Copynumber: 1.9 Consensus size: 862
17767675 CCCAGTCTAA
* * *
17767685 GCATACGGAGTTCATTCTCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATGAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* *
17767750 CTCGAACATTTTCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTGAAGCATCGCCGGACA
66 CTCGAACATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG--CCA-C-C---A-CATCGCCGGACA
*** * *
17767815 ACCTGACCGACGGTGTTGGGGTTTCGACGATCGGGGGGGCCGGGGGGCCGAGGGGTTGTGCGCAC
123 ACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCC---GGG-CGAGGGGGTGTGCGCAC
17767880 ATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATACCTCATCAAACCTCAA
184 ATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATACCTCATCAAACCTCAA
* *
17767945 GAACTCACACCCCCTTAAAGAGCATTTGAGAATTTATAGGTTTGCTGCCAGTAGCCATTAAAGCG
249 GAACTCACACCCCCTTAAAGAGCATTTGAGAATTTACAGGTTTGCTACCAGTAGCCATTAAAGCG
*
17768010 TCTGAAATGCAGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTCTTTTTTTTGT
314 TCTGAAATGCAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTCTTTTTTTTGT
* * *
17768075 GCATGCCAACAAAAATACAAGGATCACGTCTACCCAGTTTGGGGCCAAAAATCCTTCCCAAAAAA
379 GCATGCCAACAAAAATACAAGGATCACCTCTACCAAGTTTGCGGCCAAAAATCCTTCCCAAAAAA
* * * *
17768140 TTTTAAAAAATTACGAACCGCAAAAAGTTTTGAAAATCGTGAAAATTAGAAAACGAGTCATCTTG
444 TATTAAAAAATTACGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCATCTTG
* * *
17768205 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
509 CCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCACAAAAATGGCAG
* * * * *
17768270 TGGCACACT-TAAATATGAAGATATGCCTAAACCCACCTGCCACCCAATAGATCAATGGCTTGCG
574 TGGCAC-CTAGAAATATGAAGATATACCTAAACCCACCTACCACCCAATAGATCAACGACTTGCG
* * * * **
17768334 CATCCC-CTCTCT-TTGGACG-A-CGC-AG-T-GCCCGCCCGCCCGTTCGTTTTGTCGGTTGGCT
638 CATCCCACTCTCTGGTCGACGTAGCGCTAGCTCGCCCACCCGCCCGCTCGTTTCATCGGTTGGCT
* *
17768392 TAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCAGCATCAGGATCG
703 TAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGCATCAGGATCG
17768457 ACAGCACGTAGAGGAGAACCCAGTCGATCCCTCGCGTGCGCATCCCGCCCCTCTGGCCGACTGAG
768 ACAGCACGTAGAGGAGAACCCAGTCGATCCCTCGCGTGCGCATCCCGCCCCTCTGGCCGACTGAG
17768522 CGCCTACGCTTGTTTCATGGGTTGACTTAG
833 CGCCTACGCTTGTTTCATGGGTTGACTTAG
17768552 GCATACAGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCGGTAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGAT-GAGACCAGACCGAGGGTTGCGGTAGCACATGCTGG
* * * *
17768616 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTTGTTGGGG-CA-C-CATCGCCGGAGAACCTGAC
65 GCTCGAACATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCCACCACATCGCCGGACAACCTGAC
** * *
17768678 CGGTGACATTGGGGTTCC-AGCGATC-GGTGGG-C-TG-GAGGGGGTGTGCGCACATGATGTGCG
130 CGACGACATTGGGGTTCCGA-CGATCGGGGGGGCCGGGCGAGGGGGTGTGCGCACATGATGTGCG
* * * *
17768738 ATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCGCAC
194 ATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATACCTCATCAAACCTCAAGAACTCACAC
* * * *
17768802 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAATGG
259 CCCCTTAAAGAGCATTTGAGAATTTACAGGTTTGCTACCAGTAGCCATTAAAGCGTCTGAAATGC
* *
17768867 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGTG
324 AGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG----T--C---TTTTTTTTGTG
* **
17768932 CATGCCAACAAAAATACAAGGATCACCTCTACCAAGTTTGCGGCCAAAACTCCTTCTGAAAAAAT
380 CATGCCAACAAAAATACAAGGATCACCTCTACCAAGTTTGCGGCCAAAAATCCTTCCCAAAAAAT
* * *
17768997 ATTAAAAAATCT-TGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
445 ATTAAAAAAT-TACGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCATCTTG
* **
17769061 CCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATTAATTTACAAGCCACAAATTTGGCAG
509 CCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCACAAAAATGGCAG
* * * * * *
17769126 TGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGGTCCACGACTTGCGC
574 TGGCACCTAGAAATATGAAGATATACCTAAACCCACCTACCACCCAATAGATCAACGACTTGCGC
* * *
17769191 ATCCCATCTCTCTGGTCGACGTAGCGCTTGCTCGCCCACCCGCCTGCTCGTTTCATTGGTTGGCT
639 ATCCCA-CTCTCTGGTCGACGTAGCGCTAGCTCGCCCACCCGCCCGCTCGTTTCATCGGTTGGCT
* *
17769256 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
703 TAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTG
17769307 GGGCAGCACA
Statistics
Matches: 660, Mismatches: 74, Indels: 45
0.85 0.09 0.06
Matches are distributed among these distances:
847 130 0.20
848 54 0.08
850 1 0.00
851 1 0.00
853 1 0.00
854 1 0.00
855 7 0.01
856 276 0.42
857 1 0.00
858 6 0.01
859 5 0.01
860 1 0.00
861 4 0.01
862 1 0.00
863 1 0.00
864 75 0.11
867 94 0.14
868 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (862 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATGAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCGAACATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCCACCACATCGCCGGACAACCTGACC
GACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGCGAGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATACCTCATCAAACCTCAAGAACTCACACCC
CCTTAAAGAGCATTTGAGAATTTACAGGTTTGCTACCAGTAGCCATTAAAGCGTCTGAAATGCAG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTCTTTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACCTCTACCAAGTTTGCGGCCAAAAATCCTTCCCAAAAAATATTAAAAAATT
ACGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTC
ACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCACAAAAATGGCAGTGGCACCTAGAA
ATATGAAGATATACCTAAACCCACCTACCACCCAATAGATCAACGACTTGCGCATCCCACTCTCT
GGTCGACGTAGCGCTAGCTCGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGCATCAGGATCGACAGCACGTAGAG
GAGAACCCAGTCGATCCCTCGCGTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCTACGCTTGT
TTCATGGGTTGACTTAG
Found at i:17769730 original size:26 final size:26
Alignment explanation
Indices: 17769699--17769751 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17769689 GTTAACTTAG
*
17769699 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17769725 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17769751 G
1 G
17769752 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17771489 original size:26 final size:26
Alignment explanation
Indices: 17771460--17771512 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17771450 GTTGACTTTG
*
17771460 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17771486 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17771512 G
1 G
17771513 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17772384 original size:26 final size:26
Alignment explanation
Indices: 17772355--17772406 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17772345 TTGACTTAGA
* * *
17772355 CATACGGAGTTCATTCCTACTCTAAG
1 CATACAGAGTTCATTCCCAATCTAAG
17772381 CATACAGAGTTCATTCCCAATCTAAG
1 CATACAGAGTTCATTCCCAATCTAAG
17772407 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAATCTAAG
Found at i:17772456 original size:894 final size:896
Alignment explanation
Indices: 17769488--17810356 Score: 38641
Period size: 903 Copynumber: 45.7 Consensus size: 896
17769478 AAACCTGTCG
* * * *
17769488 CTCTGGCCGACGTAGTGCCCGTCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
1 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * * * *
17769553 TTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCTGTAGAAGGATTGACAGTACGTAGAGAGGG
66 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGG
* * * * * * * *
17769618 ACCCGACCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCTGACTGAGCGCCCGCACGTTCATTT
131 ACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * *
17769683 CATTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATC
196 C-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * * *
17769748 TAAGATCGAACTGGACCGAGGGTTACGGTAGCACACGCTGGGCTTGGGCATGTGCTGGTGCCGCA
260 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * * *
17769813 TTTTTCTTCGTTGGGGCACCATTGC-CGGACCATCGCCGGAGAACCTGACTGGAGGCATTGGGGT
325 TTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
* * * * *
17769877 TCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGTTACTAGTACATGGCC
390 TCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
17769942 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAG
454 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * ** *
17770007 ATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGCGTCTGTAATAAGGACACTTTTTTCAAAAGGT
519 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * *
17770072 CACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGAATGCCAAAAAAAATAGAAG
584 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * *
17770137 GATCATC-TCTACCATGTTTGGGGCCACAACTCCTAT-CGAAAAAATTTTCAAAAATCTCGAACC
649 GATCA-CGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCGAAAAAATTTTAAAAAATCCCGAACC
** *
17770200 GT-AAAAGTTTTGAAAATCGTGAAAAATAGAAAACCAGTCGTCTTGCCATGAAACTTCACGTGAA
712 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * * *
17770264 GGCTTAAGGGCCCATTGTATGAAATTACAAGCCATAAAAATGGCATTTGCACACAGAAATATGAA
777 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
17770329 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
842 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
** *
17770384 CTCTGGCCCACGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCAGTTGGCTTAGGCATAC
1 CTCTGGCCGGCGTAGT----GCCCGCCCG--C-C-CGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * ** * *
17770449 AGAGCTCATTCCCAGTCTGAGATTGGACC-GAACTGAGGGTTTCGGTGGTAGGATCGGCAGCACG
58 GGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGACAGCACG
* * ** * *
17770513 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGATTGAACGCTCGTC
122 CAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG-C
* *
17770578 -CGCTCCTTTCGTGGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCT----AT-----G---A
186 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * *
17770630 -T--C-G-----GATC--A---GACGGAGGGTTGCGGTAGCACATGCTAGGCTCGGCCATGTGTT
251 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * * *
17770681 GGTGCTGCATTTTTCTTCGTCAGGGCACCATCG-TCGGAG-A--ACCTG-G---CTGA----CAG
316 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGG
* * *
17770734 CATTGGAGTTCCGACGATCGGGGCGCCCTTGGGGGGTGTGCGCACATGATGTGC-ATGGGTGCTG
381 CATTGGGGTTCCGACGATCGGGG-GGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
17770798 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-ACGAACTCACATCCCCTTAAA
444 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAA
*
17770862 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACAC-TT
508 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * *
17770926 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTTTTATGCACGCCAAA
573 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
17770991 AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
638 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * ** *
17771056 TCCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
703 TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * *
17771121 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGTAG
768 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
** * * * * *
17771186 AAATATGAAGATGTGCCTAAACCCTTCTACCACCTTATCGATCAATGGCTTGCACATCCTGTCT
833 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
17771250 CTCTGGCCGACGTAGTGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGACATATGGAGTTCA
1 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
** ** ** * * **
17771315 TTCCCAGTCTAAGATCTCACTGGATTGAGGGTTGTGGCAGAAGGATCGGTAGCACGCAGAGGGGG
66 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGG
* * * * * * *
17771380 ACCC-GATCGATCCCTGGCTTACACATCCTGCCCCTCTGGCCGGCTGAGCGCCCGGACGGTCGTT
131 ACCCGGCT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* *
17771444 TCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTC
195 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * ** *
17771509 TAAGATCAGATCAGACCGAGGGTTGTTGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCA
260 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * *
17771574 TTTTTCCTCATCGGGGCACCATCGCT-GGAGCTTCGCCGGAGAACCTGACCGGCGGCATTAGGGT
325 TTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
* * * * *
17771638 TCTGACGATCGGCGGGCCGGGGGGGTGTGTGCAGATGATGTGCCATGGGTGCTGGTACTTGGCCC
390 TCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
17771703 TTATATTGGCCCCCTATCCCTCTTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCGTTTGAGA
455 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
17771768 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
520 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * * * * *
17771833 ACAAAATCTTATACTCTTCGAGGTTTTAGCTGAATTTTTTTGTGCACGCAAAAAAAAATACAAGG
585 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * *
17771898 ATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAACTTTTAAAAAATCTCGAACCGTA
650 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTA
*
17771963 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
715 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
17772028 TTAAGGGACCATTGTATGAATTTACAAGCCA-AAAAATGGCATTGGCACGTAAAAATATGAAGAT
780 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
* * *
17772092 GTGCCTAAACCCACCTAACACCCTATCGATCCACAGCTTGCGCATACCGTCT
845 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* *
17772144 CTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCA
1 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
** * **
17772209 TTCCCAGTCTAAGATTAGACCAGACCGAGGGTTACGATAGCAGGATCGACAGCACGCAGAGGGGG
66 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGG
** * * * * * *
17772274 ACTTGGCTGATCCCCGGCTTTCGCATCCCGCCCATCTGGTCGGCTGAGTGCCCGCACACTCGTTC
131 ACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * * *
17772339 CGTGGGTTGACTTAGACATACGGAGTTCATTCCTACTCTAAGCATACAGAGTTCATTCCCAATCT
196 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * * * **
17772404 AAGATCAGACCGGACTGAGGGATGTGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGTTGCAT
261 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-
* * * * **
17772469 TTTTTCTTCGTCGGGGCACCATCAC-CGAAGCATCGTCGGAGAACCTAACCGGCCTCATTGGGGT
325 TTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
* * * * * *
17772533 TTCGACTATCGGGGGGGTCGGGGGGGTGTACGAACAT-ATGTACGATGGGTGCTGGTACTTGGCC
390 TCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
17772597 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACGCCCCCTTAAAGGGCATTTGAG
454 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
17772662 ATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
519 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
17772727 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAACAAAAATACAAG
584 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * ** * * *
17772792 GATCATGTCTACCAAGTTTAGCACCAACACTCCTTCCGAAAAATTTTTAAAACATCCCGAACCGT
649 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
* * * *
17772857 AAAAAGTTTCAAACATCGTGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCAGGTGAAAG
714 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* ** * *
17772922 CTTAAAGGACCATTGTATGAATTTACAATTCAT-AAAATGGCATTGACACACAGAAATATGAAGA
779 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* *
17772986 TGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGCGTATCCCGTCT
844 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * *
17773039 CTCTGGCCGACGAAGTGCCTGCCCACCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCA
1 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * *
17773104 TTCCCAGTCCAAGATCAGACCAAACTGAGGGTTGCAGCAGCAGGATCGGCTGCA-GCTAGA-GGG
66 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC-AGAGGGG
* * * ** * ** * *
17773167 GACCCGAC-G-TCCCCCCGCTAGCATAT-TCG-CCC-AAGGTCGGCTGAATGCGCCCTGTAACGC
130 GACCCGGCTGAT-CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG-A-GCGCCC-G-CACGC
*
17773227 TCGTTTCGT-GGTTG----A--CAT-TGG-G--CA-T---A--C---G----C-GAGTT-ATTCC
190 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
** *
17773266 CA-TCTAAGAT-GGACCATA-CGA-GGTTGCGGCAGCACACGCTGGGCTCGGGCATGTTGCTGGT
255 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG-TGCTGG-
* * * * *
17773327 TGCCGTATGTTTTCTTCGTCAGGGCACCAATCAC-CGGAGCATCACCAGAGGAACCTGACCGGCG
318 TGCCGCAT-TTTTCTTCGTCGGGGCACC-ATCGCTCGGAGCATCGCCGGA-GAACCTGACCGGCG
* *
17773391 GCATTGCGCTTGCCGACGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGAATGGGCTG
380 GCATTGGGGTT-CCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCG-ATGGG-TG
* *
17773455 CTTGGTA-TTGG-CCTTATATTGG-CCCCTAATCCCTCATCAAACCTTGAGAAACTGCACA-CAC
441 C-TGGTACTTGGCCCTTATATTGGCCCCCT-ATCCCTCATCAAACCTCGAG-AACT-CACACCCC
*
17773516 CTTAAAGAGCATTTGAAGATTTCAC-GGTTTGCTGCCAGCTAGCCATTAAAGTGTCTGAAATGTG
502 CTTAAAGAGCATTTG-AGATTTTACAGGTTTGCTGCCAG-TAGCCATTAAAGTGTCTGAAATG-G
* * * *
17773580 GGACA-TTTTTTCAAAATGATGCACAAAATCTTGTACACTTTGA-TTTTTAGCTAGAATTGTTTG
564 GGACACTTTTTTC-AAATGGT-CACAAAATCTTGTACACTTCGAGTTTTTAGCT-GAATTTTTTT
* * * *
17773643 GTGGCATGCCAACGCAAAATACAAAGGATCACATCTACCAAATTTGGGGCCAAAAACT-CTATTC
626 GT-GCATGCCAAC-AAAAATAC-AAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCT-TCC
* * *
17773707 GAAAAAA-TTT--AAAATCCAGAATCGTAAATAAGTTTCAAAAATCGTGAAAAATAAAAAAACGA
686 GAAAAAATTTTAAAAAATCCCGAACCGTAAA-AAGTTTCAAAAATCGTGAAAAAT-AGAAAACGA
* *
17773769 GTCATC-TGCCAATGAAACTTAACGTGAAGGCTTAAAGGGACCATTGTATGAATTTAACAA-CCA
749 GTCGTCTTGCC-ATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTT-ACAAGCCA
* * * *
17773832 TAAAAATTGCAATTGGCAGCACAGAAACATGAAGATATG-CTAAA-CCACCTACGC-CCCTATCG
811 TAAAAATGGC-ATTGGCA-CGCAGAAATATGAAGATGTGCCTAAACCCACCTAC-CACCCTATCG
* * * * *
17773894 ATCCATGGCTTGTGCGTCCTGCCT
873 ATCCACGGCTTGCGCATCCCGTCT
** * * *
17773918 CTCTGGCCGATGTAGTGCCCGCCCGCCCTGCTTGTTTCGTCGATTGGCTTAGGCGTACGGAGTTC
1 CTCTGGCCGGCGTAGTGCCCGCCCGCCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * ** *
17773983 ATTCCCGGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCCGGATTGGTAGCACGTAGAGGGG
65 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGG
* * * *
17774048 GACCC-GATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGTCCGCACGCTCGT
130 GACCCGGCT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
17774112 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A----C---
194 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * *
17774163 C----A---GA-C--A--GA-GG--GCAGCAGAACATTCTGGGCTCGGCCATGTGCTGGTGCTGC
259 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * * * **
17774213 ATTTTTCTTC-TCCGGGGCAGCATC-ATCAGAGCATCGTCGGAGAACTTGACCGATGGCATTGGG
324 ATTTTTCTTCGT-CGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
** * *
17774276 GTTTAGACGATCAGGGAGGCC-GGGGGGTGTGCGCACATGATG-GATGATGGGTGCTGGTACTTG
388 GTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG-CGATGGGTGCTGGTACTTG
* * *
17774339 GCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAAATTCACACCCCCTTAAAGAGTATT
451 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG-AACTCACACCCCCTTAAAGAGCATT
* *
17774404 TGAGATTTTACATGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
515 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
17774469 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTCTTTGTGCATGACAA-AAAAAT
580 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT-TTTGTGCATGCCAACAAAAAT
* * * *
17774532 ACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCTTTACGAAAAAATTTTAAAAAATCTCGA
644 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* *
17774597 ACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
709 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
17774662 GAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
774 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
* * * * **
17774727 AAAGATGTGCCTAAACGCACCTGCCACCCTATTGATCCATAGCTTGCGCATCCCGTCT
839 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
17774785 CTCTGGTCGACGTAGAGCTCGCCCACCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
1 CTCTGGCCGGCGT--AG-T-G----CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * * *
17774850 AGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGCAGCAGCAAGATGGACAGCACGT
58 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * * * * *
17774915 AGAGGGGGGCCCGACCT-ATCCTCGACTTGCGCATCCCGCCCCTCTGGCCTGCTTAGCGCCCGTA
123 AGAGGGGGACCCG-GCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
17774979 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG--T---C-TA---AG---A-
187 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
17775031 T--C-G-----GATCGGACC--A---AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
252 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * *
17775083 GTGCCGTATTTTTCTTTGTC---G----A--G---GCAGCATCGCCGGAGAACCTGACCGGCGGC
317 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* *
17775136 ATTTGGGTTCCGACGATCGGGGGGGCC-GGAGGG-GT----AC-T--TG-GC------TG-T--T
382 ATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
17775182 A---------T-T-TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
446 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
17775236 CATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-CTTGAAATTGGGACACTTTTT
511 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATGGGGACACTTTTT
* * * *
17775300 TCAATTGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAA
575 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * * * *
17775365 AAATACAAGGATCACGTCTACCTAGATTGGGGCCAAAACTCTTTTCAAAAAAATTTAAAAAAATC
640 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * ** * *
17775430 CTGAACCGTAAAAATTTTTGAAAACCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTC
705 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * * ** *
17775495 ACGTGAAGGCTTAAGGGACCAATGTATGAATTGAAAAGCCATAAAAATGGCATTGCCACATAAAA
770 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * * *
17775560 ATAGGAAGATGTGCCTGAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCTTCT
835 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
17775622 CTCTGGCCGACGTAGTGCCCGCTCGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAG
1 CTCTGGCCGGCGTAGTG--C-C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* ** * ** * * * ** *
17775687 TTCTTTCCTGGTCTAAGATCAGACTGGACCGAGGGTTACAGTAGCAGGATCGGTAGCACGTAGAG
62 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAG
* ** * * ** *
17775752 GGGTACCCGGCCAATCCCCGGCTTGTGCATCCCACCCCTCTGGCCAACTGAGCGCCCGCACACTC
127 GGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * *
17775817 GTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCGTACGGAGCTCATTCCTA
192 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* ** ** * *
17775882 GTCTAAGATCAGATTGGACCGAGGGTTGCGATAGCACATGCTGGGCTCGAGCATGTCCTGGTGCC
257 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * *
17775947 GTATTTTTCTTCATCGGGGCACCATCG-TCGGAGCGTCGTCGGAGAACCTGACCGACGGCATTGG
322 GCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGG
* *
17776011 GGTTCC-AGCAAT--------CGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTG
387 GGTTCCGA-CGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* ** * *
17776067 GCCCTTGTATTTACCCCCTATCCCTCATCAAACCTCAAGAACTCACGCCCCCTTAAAGAGCATTT
451 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
17776132 GAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
516 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
17776197 GGTCACAAAATCTTGTAAACTTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-ATAAATT
581 GGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA-AAAAT
* * * * ** *
17776261 GCAAGGATCATGTCTACCAGGTTT-GGGCGAAAACTCCTTTTGAAAAAATTTTAAAAAATCTCGA
644 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* * *
17776325 ACCGCAAAAAGTTTCAAAAATCATGAAAAATTGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
709 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
17776390 GAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATAT
774 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
* * *
17776455 GAAGATGTTCCTAAAGCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCT
839 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
17776513 CTCTGGCTGGCGTAGTGCCCGCCCGCCTGTCTGCCTGCCCGCTCGTTTCATCAGTTGGCTTAGGC
1 CTCTGGCCGGCGTAGT----G--C-CC-G-C--CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
17776578 ATACGGAGTTCATTCCCAGTTTAAGATCGGATC-GAACTGAAGGTTGCGGTAGCAGGTTCGACAG
54 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGACAG
* ** * *
17776642 CACGCAGAGGGGGACCC-GATCGATCCCCGGCTTGCGCATCCCATCCTTCCT-GTCGGCTGAGCG
118 CACGCAGAGGGGGACCCGGCT-GATCCCCGGCTTGCGCATCCCGCCCCT-CTGGCCGGCTGAGCG
**
17776705 CCCGCACGCTTATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
181 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * *
17776770 GTTCATTCCCAGTCTAAGATCGTATCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCAT
246 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * *
17776835 GTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATC-ATCGGAGCATCGTCGGAGAACCTGACC
311 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACC
* * * * *
17776899 GACGGCGTTGGGGTT-CGGCCATCAGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGT
376 GGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
17776963 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACCTCGAGAACTCACACCCCCT
440 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAACTCACACCCCCT
* * * *
17777028 TAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAACTGTCTAAAATGGGGACA
504 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
17777093 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTCGCTGAATTTTTTTGTACATGC
569 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* *
17777158 CACCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCC-AAAATAATTTTA
634 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTA
* * * ** *
17777222 AAAAATACTGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATG
698 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
17777287 AAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATGAAAATGGCATTGGCA
763 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
17777352 TGCAAAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCTTGCTCATCCG
828 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
17777417 GTCT
893 GTCT
* * * *
17777421 CTCTGGTCGGCGTAGT----GCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTTA
1 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * *
17777482 TTTCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAACACGCACAGGGGG
66 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGG
* * * * * *
17777547 ACCC-GATCGATCCCCCGCTTGCGCATCCCACCCCTCTGGCCGGTTGAACGCCCGCACGCTCATT
131 ACCCGGCT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
*
17777611 TCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
195 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * * *
17777676 TAAGATCAGACCGGATCAAGGGTTGTGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCA
260 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
*
17777741 TTTTTCTTCGTCGGGGCACCATCGC-CGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGT
325 TTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
17777805 TCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
390 TCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * **
17777869 TT-TTTCTGGCCCCCTATCCTTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAG
455 TTATAT-TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
17777933 -TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGT
519 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
17777997 CACAAAATCTTGCACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
584 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * * * *
17778062 AATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCTAAAAAATTTTAAAAAAT-CTGAATCGC
649 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
* * *
17778126 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGCCGTCTTGCCATAAAACTTCACGTGAAGG
714 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * **
17778191 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCGCATAGAAATATGAAGA
779 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* * *
17778256 TGTGCCTAAACTCACCTACCACCTTATCGATCCACGGCTTGCGCTTCCCGTCT
844 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * *
17778309 CTCTGGTCAGCGTAGT----GCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCA
1 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * ** ** * * * ** *
17778370 TTCCCAGTCTAAGATAGAACTGGATTGAGGGTTGCGACAGTAGGATTGGTAGCACGCAGATGGGG
66 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGG
* * * * * *
17778435 ACCTGG-TCGATCCCCGGCATACGCATCCCGCCCCTCTAGCCGGTTGAGTGCCCGCACGCTCGTT
131 ACCCGGCT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
17778499 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A---
195 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * *
17778548 T----T-GGACC--A---AGGGTCGCTGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACA
260 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
** *
17778603 TTTTTCTTCACCGGGGCACCATCG-TCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGT
325 TTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
* ** * * *
17778667 TTCGGTGATCGGGGGGTCGTGGGGCCATGGGGTGTGCCCAAATGATGTGCGATGGGTGCTGGTAC
390 TCCGACGATCGGGGGG-C--CGGG----GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
17778732 TTGGCCCTTATATTAGCCCCTTATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCA
448 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
17778797 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
513 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* ** * * *
17778862 AATGGACACAAAATCTTGTACTGTTCAAGTTTTTAGCTGAATTGTTTTGGGCATGCCAACAAAAA
578 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * * *
17778927 CACAAGGATCATGTCTACCAAGTTTCGAGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCA
643 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
** *
17778992 AACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCACG
708 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
17779057 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCACACAGAAATA
773 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* * * *
17779122 TGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCATGGCTTGCGTATCTCGTCT
838 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * *
17779181 CTCTGGCCGGCGTGGTGGCCGCTCGCTCGTCCGCCCGCTTGTTTCGTCAGTTGGCTTAGGTATAT
1 CTCTGGCCGGCGTAGT-G-C-C-CG--C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* ** * * * ** *
17779246 GGAGTTCATTCTCAGTCTAAGATTAGACCAGACCAAGGGTTACGGTAGCAGGATCGGTAGCACGT
58 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
*
17779311 AGTGGGGGA-CC--C-GA-------C---CG-AT-------C-C---CCGGCTGAGCGCCCGCAC
123 AGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * * * *
17779350 ACTCATTTCATGGGTTGACTTAGGCCTACAGATTTCATTCCCAGTCTAAGCATACGGAGTTCATT
188 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * * * * *
17779415 CCCAATCTAAGATCGGACCAGACCAAGGGTTGCGACAGCACATGCT----T-----TTTTTCTCC
253 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT-G
** *
17779471 G-GCCATATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATCGCCAGAGAACCTGACCGGCGGC
317 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* * *
17779534 ATTGGGGTTTCGACGAT----------GGGGGGTGTGCGCACATGATGTGCGACGGGTGCTAGTA
382 ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
17779589 CTTGGCCCTTATATTGGCCCCCTAGCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGC
447 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
**
17779653 ATTTGAGATTTTACAGGTTTGCTGGTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
512 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
17779718 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTCCATGCCAAAAAAA
577 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
17779783 ATACAATGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCT
642 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
***
17779848 GAACAACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT-GTCTTGCCATGAAACTTCAC
707 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * * *
17779912 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATGAAAATTGCATTGGCATGCAGAAAT
772 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
*
17779977 ATGAAGATGTGCC-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
837 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
17780036 CTCTGGCCGGTGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAG
1 CTCTGGCCGGCGTAGTGCCCGCCCG--C-C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * *
17780101 TTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTT------------TCGACAGCATGCAAAG
62 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAG
* ** * * * ** * *
17780154 GGGGATCC-AATCGATCCTCGACTTGTGCATCCTACCCCTCTGGCCGGTTGGGCGCCCGCACGCT
127 GGGGACCCGGCT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * * * ** *
17780218 CGTTCCATGGGTTGACTTAGGTAGACGGAGTTCATTCCCAATCTAATTATACGGAGTTCATTCTC
191 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * *
17780283 AGTCTAAGACCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
256 AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
** * * *
17780348 CATATTTTTCTTCGTCGGGGCACCATCG-TCAGAGCATCGCTGGAGAACCTGACCGGTGGCATTG
321 CGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* *
17780412 GGGTTCCGGCGATCGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTA
386 GGGTTCCGACGATCGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
17780477 GGCACTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
450 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
17780542 TGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
515 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
17780607 TGGTCACAAAATCTTGTACACTACGAGTTTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
580 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * *
17780672 CAAGGATCACGTCTACCAAGTTTGGGTCCAAAACTCCTTCTGAAAAAATTTTAAGAAATCCTGAA
645 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
* * ** * *
17780737 CCGTAAAAAGTTTCAAAAATCTTGAAAAATAAAAAATAAGTCATCTTGCCATGAAACTTCACATG
710 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* ** *
17780802 AAGGCTTAAGGTACCATTGTATGAATTTACAAGCTGTAAAAATGGCATTGGCATGCAGAAATATG
775 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * *
17780867 AAGATGTGCTTAAACCAACCTACCACGCTATCGATCCACGGCTTGCGCATCCCGTCT
840 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
17780924 CAT-TGGCCGACGTAGTGCCCGCCCACCCGCCCGCTCGCTCATTTCGTCGGTAGGCTTAGACATA
1 C-TCTGGCCGGCGTAGTGCCCG----CCCGCCCGCTCG----TTTCGTCGGTTGGCTTAGGCATA
* * ** * * * * *
17780988 CGAAGTTCATTCCCAGCCTAAGATCGGATTAGGCTGAGGGCTGCAGCAGCAAGATC-AGCAGCAC
57 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCAC
* * * * * * *
17781052 -TAGAGGGGGACCCGGCCGATCCTCGGCTTACGCATCCCGCCCCTCTAGCCGACTGAGCACCCGC
121 GCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
*
17781116 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCA
186 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
** * * * * * *
17781181 TTCCCAGTCTAAGATCAAACTGGACCGAGGGTTGCGGCAGCATATGCTAGGCTCGGGAATTTGTT
251 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * ** * * * *
17781246 GGTGCCTCAATTTTCTTCACCGGGGCATCATCG-TCGAAGCATCGTCAGAGAACCTGACCGGCGG
316 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGG
* *
17781310 CATTGGGGTTCCGACGATCGGAGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGA
381 CATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
17781375 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACTCCCTTAAAGA
445 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
17781440 GCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGTACACTTTTT
510 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
17781505 TCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
575 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * * ** *
17781570 AAATACAAGGATCACCTCTGCCAAGTTTGGGGCCAAAAATCATTCAAAAAAAATTTAAAAAAATC
640 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
** * * * *
17781635 TTGAACCGCAAAAAGTTTCAAAAATCATGAAAAAGAGAAAACGAGTCATCTTGCCATGAAACTTC
705 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
17781700 ACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
770 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
** *
17781765 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATTGCTTGCGCATCCCATCT
835 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* *
17781827 CTCCGACCGGCGTAGTGCCCGTCCGTCCGCCCGCCCGGTCGTTTCGTCGGTTGGCTTAGGCATAC
1 CTCTGGCCGGCGTAGTGCCCG--C--CCGCCCG--C--TCGTTTCGTCGGTTGGCTTAGGCATAC
17781892 GGAG-TCATTCCCAGTCTAACGCATACGGAGTTCATTCCCAGTCTACGATCAGACCGAACCGAGG
58 GGAGTTCATTCCCAGTCTAA-G-AT-C---G----------G---AC---C--A--G-ACCGAGG
** * * * * *** *
17781956 GTTATGGCAGCAGGATCGCGATAGCTCGTAGAGGGGGACCC-GATCGATTGTCGGCTTGCTCATC
96 GTTGCGGCAGCAGGAT--CGACAGCACGCAGAGGGGGACCCGGCT-GATCCCCGGCTTGCGCATC
* * * * *
17782020 CCGCCCCTCTAGCCGACTGAGCTCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTT
158 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * * * *
17782085 CATTCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAATCGGATCGAGGGCTGCAG
223 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG
* ** *
17782150 CAGCACATGCTGGGCTTGGGCATGTGCTGGTGTAGCATTTTTCTTCATCGGGGCACCATCGC-CG
288 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCG
* * * *
17782214 GAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGTCGGGGGGGTA
353 GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTG
* * *
17782279 TACGCACATGATGTGCGATGGGTGC-GACTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCA
417 TGCGCACATGATGTGCGATGGGTGCTG-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
17782343 AACCTCGATATCTGACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
481 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * * * *
17782408 TTAAAGTGTTTGAAATGGAGACACTCTTTCCAAATGGTCACAAAATCTTGTAAACTTTGAGTTTT
546 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
17782473 TAGC-GAAATTTTTTTATGCACGCCAACAAAGATACAAGGATCACGTCTACCAAGTTTGGGGCCA
611 TAGCTG-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * *
17782537 AAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTTTC-AAAATCATGAAAAAT
675 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
17782601 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
740 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
17782666 AAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
805 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
*
17782731 TCGATCCACGGCTTGCACATCCCGTCT
870 TCGATCCACGGCTTGCGCATCCCGTCT
* * *
17782758 CTCTGGCCAGCATAGTGCCCGCCCGTCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
1 CTCTGGCCGGCGTAGT----GCCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * *
17782823 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGTAGGATCGGCAACATGC
58 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* ** * * * *
17782888 TGAGGGGGACCC-TTTCGATCCCCGACTTGCGCATCCCACCTCTCTGGCCGGCTGAGCGTCCGCA
123 AGAGGGGGACCCGGCT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
17782952 CGCTCGTTTCGTTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA-GGAGTCCAT
187 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * *
17783016 TCCCAGTCTAAGATCGGACCTGACCGAGGGTTGCAGCAGCACATGCTAGGCTCGGGCATGTGCTG
252 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * ** **
17783081 GTGCCGCATTTTTCTTCGCCTGGGCACAATC-ATCGGAGCATCATCGGAGAACCTGACCGTTGGC
317 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
** * **
17783145 ATTGGGGTTTTGGCGATCGGGGGGCC-GGGGGGTGTGCGCATGTGATGTGCGATGGGTGCTGGTA
382 ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
17783209 GTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
447 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * *
17783274 ATTTGAGATTTTACAGGATTGCTACCAGTAGCCATTAAAGTGTTTGAAATGGGGGCACTTTTTTC
512 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
17783339 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTATGCATACCAACAAAA
577 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *** ** *
17783404 ATACAAGGATCACCTATACGTGGTTTGGGG-CAAAACTCCTTTTGAAAAAATTTTAAAAAATCTC
642 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * * * * * * *
17783468 GAACCGCAAAAAGTTTCGAAAATCATGAAATATAAAAAATGAGACATCTTGCCATGAAACTTCAC
707 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
17783533 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-------AA----A-T---------AAAT
772 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* * * *
17783577 ATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCATGTCTTGCGCATCCCATCT
837 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
** * * * * *
17783637 CTCTAACTGACGTAGTGCTTGTCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACAGAG
1 CTCTGGCCGGCGTAGTGC----CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * *
17783702 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGGAGGATCGGCAGCATGGAGAG
62 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAG
* ** * * * * * * * *
17783767 GTGGACCCAACCGATCCCTGGCTTGCGCATCTCACCCCTCTGGCCGGCTAAGTGTCCGCACGCTA
127 GGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * *
17783832 GTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAGGGAGTTCATTCCCA
192 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * *
17783897 GTCGAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTTGAGCATGTG-TCGGTGC
257 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT-GGTGC
* * * * * * *
17783961 CGTATTTTTCTTCGCCTGGGCACCATCGC-CTGATCATCGCCAGAGAACCTGATCGGCGGCATTG
321 CGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* **
17784025 GTGTTCCGACGATCGGGAGGGGTTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
386 GGGTTCCGACGATC-GG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
17784090 TGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCAT
449 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * *
17784155 TTGAGATTTTATAGGTTTGCTACCAGTAGCCAATAAAATGTCTGAAATGGGGACACTTTTTTCAA
514 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
** *
17784220 ATGGTCACAAAATCTTGTACACTTTAATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
579 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* *
17784285 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAA
644 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
*
17784350 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTCACGT
709 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * * * *
17784415 GAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGTCATTGGCATGTAGAAATAG
774 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
* *
17784480 GAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCT
839 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
17784538 CTCTGGCCGGCATAGTGCCCGCCCGTCCGCCCGCCCGATCGTTTCATTGGTTGGCTTAGGCATAC
1 CTCTGGCCGGCGTAGTGCCCG--C--CCGCCCG--C--TCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * * * * * *
17784603 GGAGTTCATTCCCACTCTAAGATCAGATCGGGCTGATGGTTACGGTAGAAGGATCAACAGCACGC
58 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* *
17784668 AGAGGGGGACCCGG-TCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCA
123 AGAGGGGGACCCGGCT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
**
17784732 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCAT
187 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * *
17784797 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAAATACTGGGCTCGGCCATGTGCTG
252 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* ** * * * * * *
17784862 GTGTCGCATTTTTCTTCACCGGGGTACCATCG-TCGGAGCATCACCGGAGAATCTAACCGACAGC
317 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* * * *
17784926 ATTGGGGTTCCGGCGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTG
382 ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * * *
17784991 CTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTTGATAACTCACACCCCCTTAAAGTGC
447 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
17785056 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACACTTTTTTC
512 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
17785121 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGGCAGA-AAA
577 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-ACAAA
* * * *
17785184 AATACTAGGATCATGTCTACCAAGTTTTGAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
641 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
*
17785249 CGAACCATAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
706 CGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
17785314 ATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-G---GC----
770 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* ** * *
17785371 --------ATGTGCCCAAACCCACCTACCACCCTATTTATTCACAGCTTGCGCATCCCGTCT
835 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
17785425 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGATGGCCTAGGCATAGGGAGTTCA
1 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* ** ** * * * * * *
17785490 TTCCTAGTCTAAGATCGGACTGGATTGAGGATTACGGCAGTAAGATCGGCAGCACGTAGAGGGGG
66 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGG
** * * * * * * * *
17785555 ACCTAGCCGATCCTCGGGTTACGCATCCCGCCCCTCTGACCGCCTGAGCACCCACACGCTCGTTT
131 ACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * * *
17785620 CGTTGGTTTAGTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAATCT
196 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
** * *
17785685 AAGATCGGACCGGACCGAGGGTTATGGCAGCACATGCTGGGCTTGGACATGTGCTGGTGCCGCAT
261 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * *
17785750 TTTTCTTCGTCGGGGCACCATCG-TCGGAGCATCACCGGAGAACCTGACCGACGGTATTGGGATT
326 TTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTT
* * * * * **
17785814 -CGGCAATCGGGGGGGCCAGGGGGGTGTGCGCACATGAAGTGCGATGGGTGCTGGAACTTGGTGC
391 CCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*** * ** ** * * * * * * * *
17785878 TTATATTGGCCTAGGTAT-ACGGAGTTC-ATTC-CAAG-TCTAAGACCGGACC-GAATCGAGGAT
455 TTATATTGGCC-CCCTATCCCTCA--TCAAACCTCGAGAACTCACACC--CCCTTAA-AGAGCAT
* *** ** * **** ** **
17785938 TACGGTAGTAGGATTGGTAGCACGTAGAAGGGGGCC--TAGCTGATCCCCG-G-CTTGTGCATCC
514 T----T-G-A-GATT-TTA-CA-G--GTTTGCTGCCAGTAGC-CATTAAAGTGTC-TG-AAATGG
* * * ** * * ** ** * ** * * * * ***
17785999 CGTCCCTTTGGTCGACTGAG-CACCCGCACGCTCGT-TTCGT-GGGTTGACTTAG--GCA-TACG
564 GGACACTTTTTTCAAATG-GTCA--CAAAATCTTGTACACTTCGAGTT--TTTAGCTGAATTTTT
** * * * * * * * * * *
17786058 GAGTTCATTCCCAGTCTAAGATTGGAC-CGGACCGAGGGTTGCAACAGCACA-TGCT-GGGCTCG
624 TTGTGCA-TGCCA-AC-AAAAAT--ACAAGGATC-A-CG-T-CTAC--CA-AGT-TTGGGGC-C-
** * *** **** ****** ** * * **** ** *** * *
17786120 AGAATGTGCTGGTG-TCGTATTTTTCTTTGTCGGGGCACCATCGCCAG-AGC-ATCGTCGGGGAA
674 A-AAACTCCTTCCGAAAAAATTTTAAAAAATC-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
** ** ** * ** *** *
17786182 CCTA-ACCGACG-GCATCGGGGTT-CC--G--AC--GATCGTGGGGGCGGGAGTGTGTGCACATG
737 AATAGA-AAACGAG--TC-GTCTTGCCATGAAACTTCA-CGTGAAGGCTTAAG-G-G-AC-CAT-
** * ** * * * * * ** * ** *
17786238 ATGTAATTTTTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCA-AACCACG-AG
792 -TGT-A----TG-AAT-TTAC-AAGCCATAAAAATGG---CAT-TGGCACG-CAGAAATATGAAG
** * ** * * * * ** * *
17786301 AACT--C-ACACCC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
843 ATGTGCCTAAACCCACC-T-ACCACCCTAT-CGA-TCCAC-GGCTTGC-G-CA-T--CC-----C
*
17786362 GTGT
893 GTCT
* * ** * ** * ***** ** * *
17786366 CTGAAATGG--GGACACTTTTTTCAAATTGTCACAAAATCTCGTACACTTCGAGTT--TTTAGCT
1 CT---CTGGCCGG---CGTAGTGC---CCG-CCCGCCCGCTCGT-TTCGTCG-GTTGGCTTAG--
* ***** * * * * * * * * *
17786427 GAATTTTTTTGTGCATGCCAAG--AAAAATACAAGGATCACGTCTACC-AAGTTTGGGGC--CAA
52 GCA-TACGGAGTTCATTCCCAGTCTAAGAT-C--GGACCA-G---ACCGAGGGTTGCGGCAGC-A
** ** *** * **** * **** * ** ** ***** *
17786487 AAATC--CTTCCAAAAAAAATCTCGAACC-GC--A--AAAAG-TTTCAAAAATCGTG-AAAAATA
108 GGATCGAC-AGC-ACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGC--GCATCCCGCCCCTCTG
**** ** * ** * * *
17786543 GAAAAC-GAGTCGTCTTGCCATGAAAC-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
169 GCCGGCTGAG-CG-CCCG-CACG-CTCGTT-TCGTG--GG-TT----GA-C--T-TAGGCA--TA
* ** * * * * ** * ** *
17786606 C-AAGCCATAAAATGGCATTGGCA-TGT-AGAAATATGAAGATGTGCCAAAACCCA-CCTACCAC
216 CGGAG---T----T--CATTCCCAGTCTAAG-CATACG--GA-GT-TC-ATTCCCAGTCTAAGAT
** * * * * * * * * *
17786667 CCTATC-GATCC-ACGGCTTGC-GCATCCCGT-CT---CTCTGGCCA-GCG-TAGTGCC-CGTCT
266 CGGACCGGA-CCGA-GGGTTGCGGCAGCACATGCTGGGCTC-GGGCATGTGCTGGTGCCGCAT-T
** ** * * *
17786722 GCTCGTTTCGTCGGTTGGC-TTA-GGCATACGGAGTTCATTC-CC----AATCTAAGATCGGACC
327 TTTC--TTCGTCGG--GGCACCATCGC-T-CGGAG--CA-TCGCCGGAGAACCT--GACCGG--C
* * * ** * * * *
17786780 AG-ATTGAGGGTTGCAACAGCAGGATTGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCAGCTT
379 GGCATTG-GGGTT-C--C-G-ACGATCGG--G-GGGC--CGGGGG----GGT-G-TGCGCA-CAT
* ** * ** * * * *** * ** *
17786844 GCGCATCTCGCCCCTCTGGCTGGCTGAGCGCCT-GCACACTCATTTCGTGGGTTGACTTAAGCAT
426 --G-ATGT-G---CGATGGGT-GCTG-GTACTTGGC-C-CTTATAT--T-GG-CCCCCTATCCCT
** * ** * ** ** * * **
17786908 ACAGAGTTCATTCTCGGTCTAAGCATACAGAGTTCATTCCCAGTCTA-AG-ATTGGACATGAT-C
476 -C--A--TCAAAC-C--TC-GAG-A-ACTCA---CA-CCCCCTTAAAGAGCATTTGAGATTTTAC
* * * ** * *** *
17786970 GAGGGTTGC-GGCAGCA--CATGCT-GGGCTCGGGCATGTGCTGGTGTCG-CATTTTTCTTCACC
526 -AGGTTTGCTGCCAGTAGCCAT--TAAAG-T--GTC-TGAAATGG-G--GACACTTTT-TTCA--
* * * * ** *
17787030 GGGGCACCATCGCCGGAGCATCGTAGGAGAA-CCTG-ACCAGCGGCATTGGGGTTTCGACGATCG
578 -----A--AT----GG-TCA-C--A--A-AATCTTGTA-CA----C-TTCGAGTTTTTA-G--CT
********* * ** * ** * * ** * * *
17787093 GGGGGGCCGGGGGGGTGCGC-ACATGATGTGCAATGGGTGCTGGTATTTGGCCCTTA-TATT-GG
616 GAATTTTTTTGTGCATGC-CAACA-AAAATACAA-GGAT-CACG--TCT--ACC-AAGT-TTGGG
* *** * ** ** **** * ** * * *
17787155 CCCCCTA-TCCCT-C-ATCAAACCTCGTGAACTCGCAC-CCCCTTAAAGAGCATTTGAGATTTTA
671 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-C-CGAACCGTAAAAAG--TTTCA-A----A
* ** * * * * *
17787216 CAGGTTTACTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACGCTTTTTTCAAATGGTCACAAA
727 -A-----A-T--C-GT-G--A--AAAA--T-AGAAAACGAGTCG--TCTTGC-CAT-G-----AA
* *** * * * * ***
17787281 ATCTTGTACACTTCG-ACTTTTTAGCTGA--ATTGT-T---TTGTGCATGCCA-AGAAAAACACA
765 A-C-T-T-CACGT-GAAGGCTTAAG-GGACCATTGTATGAATT-TACAAGCCATA-AAAATGGCA
* * * ** ** * * * * ** *** ***
17787338 -AGG-A-TCACATCTACCAAGTTTGGGGCCAAAACTCCTACCGAAAAAATTTTAAAAAATCC-C-
822 TTGGCACGCAGAAATATGAAG-AT-GTGCCTAAAC-CC-ACC--TACCACCCT-ATCGATCCACG
** ****
17787398 GC-ACCGCAAAAAGT-T
880 GCTTGCGCATCCCGTCT
**** * ******* **** ** * * * ** *
17787413 -T-T-G--AAAATTGTGAAAAATAG--AAAACGAGTCATC--TTGCCATGAAACTTCACGTGAAG
1 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC-TTAGGCAT-ACG-G-A-
* *** * ** * * *** * * * **
17787469 GCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAAAAATGGCATTGTCATGCAGAAATAT-GA
61 G-TTCA-TTCCCA--GTCT-AAGAT-CGGA-CCAGACCGA-GG-GTTG-C-GGCAGCAGGATCG-
* * * ***** * * * *
17787532 AGATGTAC-CTAAACCCACCTACCAC-CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
114 ACA-GCACGC-AGA--GGGGGACC-CGGC--T-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * *
17787595 CGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTAAGGCATACGGAGTTCATTCCCAG
171 CGGC-T-GAG--CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * * * * **
17787660 TCTAAGATCAGACCAGACCGAGGGTT-GTGGCAGCAGGATCAGCAACATGCAGAGGGGGACC-AG
232 TCTAAG--CATA-C-G---GA--GTTCAT-TC-CCA-G-TC--TAAGAT-CGGA-CCGGACCGAG
** * * * ** * * * **
17787723 GTCGATCCT-CGGTTTGCTCATCCCGCCCCTCTGG--TCG-ACTGAGCGCACGCA-CGTTCGTTT
280 G--G-T--TGCGG-CAGCACATGCTG-GGCTCGGGCAT-GTGCTG-GTGC-CGCATTTTTC--TT
* * *** * * * *
17787783 CGT-GGGTTG-A-CTTAGGCATACGGAGTTCATTC-CCAGTCTAAGCAT-A-CGGAGTTCATTCC
333 CGTCGGG--GCACCAT-CGC-T-CGGAG--CA-TCGCC-GGAGAA-CCTGACCGGCG-GCATT-G
** * * * ** * * ** * ***
17787842 CAG-T-CTAAGATCGGACCGGATCGAGGGTTGCG-GT-AGCACATCTTGGGCTCGGGCATGTGCT
386 GGGTTCCGACGATCGG--GGGGCCG-GGG--GGGTGTGCGCACATGATGTGCGATGG---GTGCT
* ** * * * * * * * * *
17787903 GGTGC--GGCATTTTTCTTCGTCGGGGCACC-AT-CGTCGGAGC-ATCGTCGGAGAACCTGAC-C
443 GGTACTTGGCCCTTAT-AT--T--GGCCCCCTATCCCTC--ATCAAACCTC-GAGAA-CTCACAC
** ** * * **** * *
17787962 GACGGTATTAG-G-GTTTCGACGATCGGGGGGCCGCGTGGGTGTG-TGCGCA-CATG--ATGTGC
499 CCCCTTA-AAGAGCATTT-GA-GAT---TTTACAG-GT---T-TGCTGC-CAGTA-GCCAT-T--
* * * * * * * * ** ** * ** *
17788021 GATGGGTGCTGGTACT-TGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
548 AAAGTGT-CT-GAAATGGGGACACTT-T-TT----TCAAAT-GGTCA-CAAA-ATCTTGTA--CA
** *** *** * * *
17788084 CACCCCCTTAAAGAGCATTTGACATTTTATAGGTT-TGC-TACCAGTAGCCATTAAAGTGTCTGA
600 CTTCGAGTT-TTTAGC---TGA-ATTTT-T---TTGTGCATGCCA--A--CA--AAAAT-AC---
* * ** * *
17788147 AATGGGGA-CACTTTTTTCAA--AT-GGTCACAAAATCTTGTACACTT-CGAGTTTTTAGCTGAA
646 AA---GGATCACGTCTACCAAGTTTGGGGC-CAAAA-C---T-C-CTTCCGA------A----AA
** ** * * * * * *
17788207 TTTTTTTATGCATGCCAAAAAAAATACAATGATCATGTCAACCATGTTTGGGGCCAAAACTCCTT
691 ---AATT-T---T-----AAAAAAT-C-CCGAAC-CGT-AA-AAAGTTT-----CAAAAAT-CGT
**
17788272 CCGAAAAAATTTTAAAAAATCACGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGA
733 --G-AAAAA-TAGAAAA---------------------------------------------CGA
*
17788337 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTA
749 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
17788402 AAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCAC
814 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
*
17788467 TGCTTGCGCATCCCGTCT
879 GGCTTGCGCATCCCGTCT
* * *
17788485 CTCTGGCCGGAGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGTTTAGGCATATGGAG
1 CTCTGGCCGGCGTAGTGCCCGCCCGCCCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * * * * *
17788550 TTCATTCCCAGTCTAAGATTGGATCAAACCGAGGGATGCGGTAGCAGGATTGGCAGCTCACAGAA
62 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAG
* * * * * * * * *
17788615 AGGGACCCGACCGATCCCCAGCTTGCACATCCCACCCTTCTGGTCGGTTGAGCGCCCGCACGCTC
127 GGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * *
17788680 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCACTCCCAGTCTAACCATACGGAGTTCATTCCCA
192 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* ** ** * * * * *
17788745 GTCTAAAATCAAATTGGACTGATGGTTACGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCC
257 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * *
17788810 GCATTTTTCTTCATCGGGGCACCA----TC--A-C-T----GGAGAACCTGAACGACGGCATTGG
322 GCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGG
** * *
17788863 GGTTCCGACGATCGAGGGCACCGGTGAGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTT
387 GGTTCCGACGATCG-GGGGGCCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
17788928 -GCCCTTATATTGGCCCCTTATCCCTCTTCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
450 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * *
17788992 TGAGATTTTAGAAGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
515 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * *
17789057 TGGTCACGAAATCTTGTACACTACGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATA
580 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * *
17789122 CAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTAAAAAAATCCC-AA
645 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
* ** * *
17789186 ACAAAAAAAGTTTCAAAAATCATGAAGAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
710 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
** *
17789251 AAGGCTTAAGGGACCATTGTATGAATTTACAAGGAATAAAAATGGCATTGGCATGCAGAAATATG
775 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* **
17789316 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTAAGCATCCCGTCT
840 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
17789373 CTCTGGCCGGCGTAGTGCCCGCCCGTCCGCTCGTTTCTTCGGTTCGCTTAGGCATACGAAGTTCA
1 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * * *
17789438 TTCCCAGTCTAAGATCGGACC-GAACCGAGGGTTACGGTAGCAAGATTGGCAACACGTAGAAGGG
66 TTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGG
* * * * ** * * * * *
17789502 GACCCGACCGATCCCTGGCTTTCGCATCTTGCCCCTCTGGCTGGCTGAGTGACCGCATGCTTGTT
130 GACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
*
17789567 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C---G---A-----A--C
195 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * ** *
17789617 -----T------GGACCGAGGGTTGCGACAGTAAATGCTGGGCTCGATCATGTGCTGGTGCCACA
260 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* *
17789671 TTTTCCTTCGTCGGGGCACCATCG-TCGGAGCATC-CTCGGAGAACCTGACCAGCGGCATTGGGG
325 TTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGC-CGGAGAACCTGACCGGCGGCATTGGGG
*
17789734 TTCC-AGCGATCGGGGGGCC-GGGGGGTGTCCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
389 TTCCGA-CGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * * * * *
17789797 CCTTATATTGGCCCCCTATGCCTCATCAAACCTTGATAACTCACTCCCCCTTAATGGGCATTTCA
453 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * *
17789862 GATTTTATAGGTTTGCTGCCAGTAGCCATTAAATTGTTTGAAATGGGGACACTTTTTTCAAATGG
518 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
17789927 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
583 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * ** * * * **
17789992 GGATCACTTCTACCAACTTTGGGG-CAAAACTCCTTTTGAAAAAATTTCAAAAAATCTCAAATTG
648 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* *
17790056 TAAAATA-TTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
713 TAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * * *
17790120 GGCTTAA-GGACCCTTGTATGAATTTACAAGCCATAAAAATGGCATCGGCACACAAAAATATGAA
777 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
*
17790184 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCT
842 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* ** *
17790239 CTCTGGCCGACGTAGTGCCTTCCCGCCCGCCCGCAGGCTAATTTCGTCGGTTGGCTTAGGCATAT
1 CTCTGGCCGGCGTAGTG----CCCGCCCG-CC-C--GCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * *
17790304 GGAGTTCA-TCCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATC-AGTAGCAC
58 GGAGTTCATTCCC-AGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCAC
* * * * * * *
17790367 GCAAAGGGGGACCC-GATCGTTCCTCGACTTGGGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCG
121 GCAGAGGGGGACCCGGCT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
17790431 TACGCTCGTTTCATGGGTTGACTTAGGCAGACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
185 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * *
17790496 ATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGACATGTGC
250 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * * * * *
17790561 TGGTGCCACATTTTTCTTCGCCAGGGCACCAACG-TCGGAGCATCGTCGGAGAACCTAACCGACG
315 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCG
* * *
17790625 GCATTAGGGGTTCCGACGATCGGGGGGCCGGCGGGGTGTGTGCACATGATGTGCGATGGGTACTG
380 GCATT-GGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
17790690 GTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
444 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
17790755 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTT
509 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
17790820 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
574 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * *
17790885 AAAATACCAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
639 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * ** * * * * *
17790950 CCCGAACCATAAAAATTTTTGAAAATCATGATAAATAAAAAACGATTTGTCTTGCCATGAAACTT
704 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * **
17791015 CACGTGAAGGTTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATACAGA
769 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
*
17791080 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCCGTCT
834 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCCGTCT
* * ** *
17791144 CTCTGGCCGGCGAAGTGCCCGCCTGCCCACCCGCTCGTTTCGTTAGTTGGCTTAGGCATACAGAG
1 CTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * *
17791209 TTCATTCCCAGTCTAAGGTCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGACAGCACACAGAG
62 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAG
* * * * *
17791274 GGGGACCC-ACTCGATCCCCGACTTGTGCATCCCGTCCCTCTGGCCGGCTGAGCGCCCGCACGCC
127 GGGGACCCGGCT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
** * * * *
17791338 CACTTCGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGCGTACGGAGTGCACTCCC
191 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * *
17791403 AGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCACGTGCTGGTGC
256 AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * *** *
17791468 TGCATTTTTCATCATCGGGGCACCATCG-TCGGAGCATCGTC-GAGGAACCTGACCAATGGAATT
321 CGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGA-GAACCTGACCGGCGGCATT
* * * *
17791531 -GGGTTCCGATGATCGGGGGGGCCCGAGGGGGTGTGCGTACATGGTGTGCGATGGGTGCTGGTAC
385 GGGGTTCCGACGATC-GGGGGG-CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
17791595 TTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
448 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC-
*
17791660 ATTT-AGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
512 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
17791724 AAATGGTCACAAAATCTTGTACACTTAGAGTTTTTATCTGAATTTTTTTGTGCATGCCAAAAAAA
577 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAA
* * *
17791789 AATACAAGGATCACGTCTACGAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCT
641 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* ** **
17791854 TGAACCACAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
706 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
17791919 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
771 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* *
17791984 TATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCT
836 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * **** *
17792045 TTTTGGCAAATGTAGTGCCCGCCCGCCCGCCCTCCCACTCGTTTCGTCAGTTGGCTTAGGCATAC
1 CTCTGGCCGGCGTAGTGCCCGCCCGCCCG--------CTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * ** * * *
17792110 GAAGTTTATTCCCAGTCTAAGATTGGACCGGATTGAGGGTTGCAGCAGCAGGATCGGCAGCACGT
58 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
** * * *
17792175 AG-GGGGGACCCGG-TCGATCCCCAACTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGTA
123 AGAGGGGGACCCGGCT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * *
17792238 TGGTCATTTCATGGGTTGAC-T-----TA--G-G--------CA---T----AT--GGAGTTCAT
187 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * *
17792277 TCCCAGTCTAAGATCGGACCGGACCAACGTTTGTGGCAGCACATGCTGGGCTCAGGCATGTGCTG
252 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * ** * *
17792342 GTGCCGTATTTTTCTTCGTCAGGGCACCATCG-TCGGAGCATCATCGGAGAACCTGACCGACGAC
317 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* * * * *
17792406 ATTAGGGTTCCGACGATCGGGGGGGCTTGGGGGGGTTTGCGCACATGGTGTACGATGGGTGCTGG
382 ATTGGGGTTCCGACGATC-GGGGGGC-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
17792471 TACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCACACCCCCTTGAAGT
445 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * * *
17792536 GCATTTTAGATTTTACAGGTTTGCTGCTACTAGCCATTAAAGTGTCAGAAATGGGGACATTTTTT
510 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
17792601 TCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAA
575 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
** * *
17792666 AAATACAAGGATCACACCTACCAAGTTTGGGGCCAAAAGTCCTTCCTAAAAAATTTTAAAAAATC
640 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * *
17792731 TCGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
705 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
17792796 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCGTTGGCATGCAGAA
770 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
*
17792861 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCCGTCT
835 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* *
17792923 CTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATAT
1 CTCTGGCCGGCGTAGT----GCCCGCCCG--C-C-CGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * *
17792988 GGAGTTCATTCCTAGTCTAAGA-CTGGACCAGACTGACGATTGCGGCCGCAGGATTGACAGCACG
58 GGAGTTCATTCCCAGTCTAAGATC-GGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACG
* * * *
17793052 CAGAGAGGGACCCGACCGATCCCCTGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
122 CAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
17793117 CGCTCATTTCGTGGGTTGACTT-GGCATGCGGAGTTCATTCCCAGCCTAAGCATACGGAGTTCAT
187 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * *
17793181 TCCCAATCTAAGATCGGACCGGAATCAAGGGTTGCTGCAACACATGCTAGGCTCGGGCATGTGCT
252 TCCCAGTCTAAGATCGGACCGG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * * *
17793246 GGTGCTGCATTTTTCTTCGTCGGGGCACCATCTC-CGGAGCATCGTCGGAGAACCTAACCGACGG
316 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGG
* * * * *
17793310 CATTGGGGTTCCGACTATCGGGGGGGTCGGGTGGGTGTGCACTCATGATGTGCGATGGGTGCTGG
381 CATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
17793375 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCACACCCTCTTAAAGA
445 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * *
17793440 GCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTCTTT
510 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
17793505 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTATGCATGCCAACAA
575 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
** * * **
17793570 AAATACGGGGATCAGGTCTACCAGGTTTGGGGTGAAAACTCCTTCCGAAAAAATTTTAAAAAATC
640 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
*
17793635 TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT-AAACTTC
705 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * ** * *
17793699 ACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCACAAAAATATCATTGGCATGGAGAA
770 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * *
17793764 ATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTACGCATCCTGTCT
835 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * **
17793826 CTCTGGCTGACGTAGTGCCCTCCTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGGGTAGGCATAC
1 CTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCG----CTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * ** *
17793891 GGAGTTCATTCCC-GATCTAGGATCGGACCAAACCAAGGGTTGTGGCAGCAGGATCGGTAGTACG
58 GGAGTTCATTCCCAG-TCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACG
* * * * * * * *
17793955 TAGAGGGGGACCCGACCGATCCCCAGCTTGCGTATCCCACCCCTCTGGCCGGCTGAGTGCCCACA
122 CAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * *
17794020 CGCTTGTTTCGTGGGTTTACTTAGGCAAACAGAGTTCATTCCCAGTCTAAGTATACGGAGTTCAT
187 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * *
17794085 TCCCAGTCTAAGATCAGATCGGACTGAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTG
252 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * *
17794150 GTGCCGGATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCAAT-GCCGGAGAACCTGACCGGTGA
317 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGC-ATCGCCGGAGAACCTGACCGGCGG
* **
17794213 CATTGGGGTTCCGACGAT--------C----GGGTGTGCGCACATGATGTGCAATGGGTGCTAAT
381 CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
17794266 ACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTTGAGTACTCACA-CCCCTTAAAGAG
446 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
17794330 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
511 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
*
17794395 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
576 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * ** * *
17794460 AATTCAAGGATCATGTCTACCAAGTTTGGGGCAAAAAAACCTCCCAAAAAAATTTTAAAAAATCC
641 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
** * * *
17794525 CGAATAGTAAAAAGATTCAAAAATCGTGAAAAATAGAAAACGAGTCGTATTGCCATGATACTTCA
706 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
17794590 CGTGAAGCCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAA
771 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* * * *
17794655 TATGAAGATATGCCTAAACACACCTACCACCCTATCAATCCACGGCTTACGCATCCCGTCT
836 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* **
17794716 CTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAATCATAC
1 CTCTGGCCGGCGTAGT----GCCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* ** * * * * *
17794781 GAAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGTGGCAGCAAGATCG-CAGCACGT
58 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * ** * * * * *
17794845 AGTGGGAGACTTGGCCGATCCCCGTCTTACGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTAC
123 AGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
17794910 TCTCGTTTCGTGTGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
188 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * *
17794975 CCCAGTCTAAGATTGGATCGGACTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG
253 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * *
17795040 TGCCGTATTTTTCTTCGTCGGGGCACCATCG-TCAGAGCAACACCGGAGAACCTGACCGGTGGCA
318 TGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCA
* * * * * * *
17795104 TTAGGGTTTCGGCGGTCGGGGGAGCCGGGGGGGTGTGCACACATGATGTACGATGTGTG-TAGGT
383 TTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GGT
*
17795168 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-TAGGAACTCACACCCCCTTAAAGA
446 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGA
* *
17795232 GCATTTGAGATTTTACAGGTTTGTTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
510 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
17795297 TCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAA
575 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* *
17795362 AAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAGCTCCTTCCGAAAAAATTTTAAAAAATC
640 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * * ** * * * *
17795427 CCAAACTGCAAAAATTTTTGAAAATCATGATAAATA-AAAAGCGATTTGTCTTGCCATGAAACTT
705 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA-CGAGTCGTCTTGCCATGAAACTT
* * * * *
17795491 CACGTGAAGGCTTCAGGGACCACTGTATGAATTTACAAGCCATGAAAATGACATTGGCATGCAGA
769 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
*
17795556 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCT
834 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
*
17795619 CTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAG
1 CTCTGGCCGGCGTAGTG----CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * ** * * * * ** *
17795684 TTCATTCCCAGTCTAAGATCAGATCAGACAAAGGCTTGTGGCAGTAAGATCGGGAGCATGCAGAG
62 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAG
** * * * * * *
17795749 GGGGATTCGGTTGATCCCCGGCCTGCGCATCCCGCTCCTCTGCCCGACTGAGCGCACGCACGCTC
127 GGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
*
17795814 GTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---------A
192 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * *
17795861 ---T----T-GGACCAGACTGAGGGTTGCGGCAGCTCATGCTGGGCTCAGGCACGTGCTGGTGCC
257 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * * * **
17795918 GCATATTTCTTCGTCGGGGCACTATCAC-CGGAGCATCGCCGGCGAACCTGACTGACGGCATTTT
322 GCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGG
* * * *
17795982 GGTTCCGACGATCGGAGGGGTCGGGGTGGTGTGCGCACGTGATGTGCGATGGGCGCTGGTACTTG
387 GGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
17796047 GCCCTTATATTGGCCCCATATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
451 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
17796112 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
516 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * **
17796177 GGTCACAAAAGCTTGTACACTTCGAGTTCTTAGCTGAATGCTTTTGTGCATGCCAACAAAAATAC
581 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
** * * * *
17796242 AAGGATCATTTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAAAATTTGAAAAAATCCCTAAC
646 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* * * * *
17796307 CGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAGCGAGTCGTCTTGCCATGGAATTTCATGTGA
711 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * * *
17796372 AGGCATAAGGGACCATTGTATGAATTTAAAAGTCATAAAAATGGCATTAGCACGCAGAAATAAGA
776 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* *
17796437 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGTATCCCGTCT
841 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * *
17796493 CTCTAGCCGGCATAGTGCCCGCCCACACGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
1 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * *
17796558 TTCCCAGTCTAAGATGGGA-CAGACCGAGGGTTGTGACAGCAGGATCGGCAGCACACAGAGGGGG
66 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGG
** * **
17796622 ACCCGGAC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTAGCTGAGTGCCCATACGCTCGTT
131 ACCCGG-CTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * * *
17796686 TCGTGGGTTGACTTAGGCATACGGAGTTCAATCCGAATCTAAGCATACAGAGTTCATTCCCAGTC
195 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * * * *
17796751 TAAGATTGGATCGGATCGAGGGTTACGGCAACACATGCTAGGCTCGAGCATGTGCTGGTGCCGCA
260 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
**
17796816 TTTTTCTTCGTCGGGGCACCA----TC---G--T---CGGAGAACCTGACCGGCGAAATTGGGGT
325 TTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
** *
17796869 TCCGGTGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGAGCGATGGGTGCTGGTACTTGGCC
390 TCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
** * * *
17796933 CTTATATTGGGTCCCTATCCCTCATCCAACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGAG
454 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * *
17796998 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAATGGGGATATTTTTTTCAAATGG
519 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGG
* *
17797063 TCACAAAATCTTCTACACTTCGAGCTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
583 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * **
17797128 GGATCACGTCTACCAAGTTTGGGGCCATAACTCCTTTCGAAAAAATTTAAAAAAATCAGGAACCG
648 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* * * * * * * *
17797193 CAAAAAGTTTCAAAAATAGTGAAAAATCGAAAACGATTCATTTTGCCATGAAACTTGATGTGAAG
713 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
17797258 GCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCATGCAGAAATATGAAG
778 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* *
17797323 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCATCT
843 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
*
17797377 CTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
1 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * *
17797442 TTCCC-GATCTCAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGG
66 TTCCCAG-TCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGG
* * * * * * * * *
17797506 GACCCGGCCGAACCACGGCTTGCTCATCTCGCCCCTCTGGCCGACTGAGCACTCGTACGCTCGTT
130 GACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
17797571 TCGT-GG--G---T-----T---GA---C-TT---AG-----GCATACGGAGTTCATTCCCAGTC
195 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* ** *
17797610 TAAGATCGGACCGGACTGAGGGTTGCAACAGCACATGCTGGGCTGGGGCATGTGCTGGTGCCGCA
260 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* *
17797675 TTTTTCTTCGTCGGGGCACCATCGC-CAGAGCATCGCCGGAGAACCTGACCGGTGGCATTGGGG-
325 TTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
*
17797738 TCC-AGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGTTGCTGGTA-TCT-G
390 TCCGA-CGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT-TGG
* * *
17797799 CCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAAAGCATTTG
452 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
17797864 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGATACGGGGACAGTTTTTTCAAATG
517 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
17797929 GTCACAAAATCTTCTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCAT-CCAAAGAAAAATAC
582 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATAC
* * * *
17797993 AAGGATCACGTATACCATGTTTGGAGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAAC
646 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* * *
17798058 TGTAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
711 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
17798123 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-AAAAATGGCATTGGCACGTAGAAATATGA
776 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* * **
17798187 AGATATGCCTGAACCCACCTACCACTTTATCGATCCACGGCTTGCGCATCCCGTCT
841 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
17798243 CTCTGGCAGGCGTAGCGCCTGGCTGCCCACCCGCCGTTCGTTTCATCGGTTGGCTTAGGCATACG
1 CTCTGGCCGGCGTAGTGCC---C-GCCCGCCCG-C--TCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * * * *
17798308 GAGTTGATTCTCAGTCTAAGATAGGACCAGACCAAGGGATGCGGCTGCAGGATCGGCAGCATGCA
59 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * ** * *
17798373 GAGGGGGACCCGACCGA-CCCCTGGCTTGCGCATCCCATCCCTCTGGCCGACTGAGCGCCCGTAC
124 GAGGGGGACCCGGCTGATCCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * * *
17798437 GCTCGTTGCATGAGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATACGGAGTTTCAT
188 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG-TTCAT
* * * ** *
17798502 TCCTAGTCTAAGATCAGACCGGACCGAGGGTTG-GGCAGCACATGCTGGGCTCGAGCACATGCTA
252 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * * * * *
17798566 GTGTCGCATTTTTGTTCGTCGGGGCAGCATC-ATCGAAGCATCACAGGAGAACCTGATCGACGGC
317 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* *
17798630 ATTGGGGTTCCGACGATCGGGGGAGCC-GGGGGGTGTGCGCACATGATGTGAGATGTGTGCTGGT
382 ATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * *
17798694 ACTTGGCCCATATATTGGCCCCCTGTCCTTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
446 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
17798759 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
511 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
17798824 CAAACGGTCACAAAATCTCGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCACGCCAACAAA
576 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
17798889 AATACAAGGATCACGTCTACCATGTTTTGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCC
641 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * * * *
17798954 CTAACCGTAAAAAGGTTT-GAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGGAATTTC
706 CGAACCGTAAAAA-GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
17799018 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACATGCAGAA
770 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * *
17799083 ATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCATCCCGTCT
835 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * *
17799145 CTCTAGCCGGCGTAGTGCTCGCCCGCACGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTGA
1 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * * * *
17799210 TTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACAGTAGCAGAATTGATAGCACACAGAGGAGG
66 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGG
* * **
17799275 ACCC-GATCGACCCCCGGCTTGCGCATCCCATCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
131 ACCCGGCT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * *
17799339 TCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTC
195 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
** * * *
17799404 TAAGATCACATCGGACCGATGGTTG-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCA
260 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * * * *
17799468 TTTTTCTTCGTCGGGGCAGCATC-ATCGGAGCATCACAGGAGAACCTGATCGACGGCATTGGGGT
325 TTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
* *
17799532 TCCGACGATCGGGGGAGCC-GGGGGGTGTGCGCACATGATGTGAGATGTGTGCTGGTACTTGGCC
390 TCCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * *
17799596 CGTATATTGGCCCCCTGTCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
454 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
17799661 ATTTTACGGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGT
519 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * * *
17799726 CACAAAATCTCGTACACTACGAGTTTTTAGCTGAATTCTTTTGTGTACGCCAACAAAAATACAAG
584 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * * *
17799791 AATCACGTCTACCATGTTTCGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGC
649 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
* * * *
17799856 AAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACTTAAAGG
714 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
17799921 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
779 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
*
17799986 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCT
844 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
17800039 CTCTAGCTGACGTAGTGCCCGCCCACCCGTCCGCATGCTCGTTTCGT-TGTCTGGCTTAGGCATA
1 CTCTGGCCGGCGTAGTGCCCG----CCCG-CC-C--GCTCGTTTCGTCGGT-TGGCTTAGGCATA
* * * * * **
17800103 CGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTACGGTAGTAGGATCGGTAGCACG
57 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACG
* ** * * * *
17800168 CAGAGGGGGACCC-GATCGATCCTTGGCTTGCGCAT-----CCTTCTAGCCGACTGAGCACCCGC
122 CAGAGGGGGACCCGGCT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * *
17800227 ACGCTGGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAAGCATACGGAGTTCA
186 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * ** *
17800292 TTCCAAGTCTAAGATAGGACCGGACCGAGGGTTGCCACAGCACATGCTAGGCTCGGGCATGTGCT
251 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* *
17800357 GCTGCCGCATTTTTCTTCGTTGGGGCACCA----TC---G--T---CGGAGAACCTGACCGGCGG
316 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGG
* *
17800410 CATTGGGGTTCCGACGA-C-GGGGGCC-GGGGGGTGTG-TCACTACTGGATGTTCGATGGGCTGC
381 CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCAC-A-T-GATGTGCGATGGG-TGC
*
17800471 TGGTACTTGGCCCTTATCTTGGCCCCCCTATCCCTCATCAAACCTCGAGCAACTCACACCCCCTT
442 TGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAG-AACTCACACCCCCTT
* * *
17800536 AAAGAGCATTTGAGATTTGTA-TGG-TTGCTGCGCACGTAGCCATTAAAAGTGTTTGAAATGAGG
505 AAAGAGCATTTGAGATTT-TACAGGTTTGCTGC-CA-GTAGCCATT-AAAGTGTCTGAAATGGGG
* *
17800599 ACAGTTTTTTCCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGC
566 ACACTTTTTT-CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
17800664 ATGCCAACAAAAATAAAAGGATCACGTCTACCCAGTTTGGGGCCAAAAATCCTTTCGAAAAAATT
630 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * *
17800729 TTAAAACATCCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCC
695 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
**
17800794 ATGAAACTTCACAAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
760 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * * * * **
17800859 GCACATAGAAATATGAAGATGTGCCAAAACCCACCTACCACTCTATCGATCCATGGCTTACTTAT
825 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
17800924 CCCGTCT
890 CCCGTCT
* * * * * *
17800931 CTCTGGCCAGCATAGCGCCTGCCCGCCCGCTCATTTCGTCGGTTGGTTTAGGCATACGGAGTTCA
1 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * *
17800996 TTCCTAGTCTAAGATTGGACCAGACCGA-GGTTGTGGCAGCAGGATC-AGCAGCATGCAGAGGGG
66 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGG
* * * * * **
17801059 GACCCAGCTGATCCTCGGCTTGTGCATCTCGCCCCTCTGGCCGGTTGAGCGCCCGCACATTCGTT
130 GACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * * *
17801124 TCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCGAAGCATTCCGAGTTCATTCCCAGTC
195 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* ** * * * *
17801189 TAAGATCAGATAGGATCGAGGGTTGCGACAGCACATACTGGGCTCGGGCATGTGCTGGTGCCACA
260 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * *
17801254 TTTTT-TTCGTCGGGGTACCATCG-TAGGAGCATCACCGGAGAACCTGACCGGCGGTATTGGGGT
325 TTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
* * * * * *
17801317 TTCGGCGAT----------GGGGGGTGTGTGCACATTATGTGCGATAGGTGCTGCTACTTGGCCC
390 TCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
17801372 TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
455 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
17801437 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGTGGACACTTTTTTCAAATGGTC
520 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
17801502 ACAAAATCTTGTACAC-TCTGAGTTTTTAGCTGAATTTTTTTTATGCGTGCCAACAAAAATACAA
585 ACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAA
* * * *
17801566 GGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAACATCCCGAATCG
648 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
17801631 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
713 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
17801696 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAG
778 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * *
17801761 ATGGGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCCTCT
843 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
** * * *
17801815 CTCTGGCCAACGTAGTGCTCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCA
1 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * *
17801880 TTCCTAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAGGATCGACAGGACGCAGAGGGGG
66 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGG
**
17801945 ACCCGATTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
131 ACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * * * *
17802010 CGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGCCAAAGCATACAGAGTTCATTCCTAGTCT
196 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * *
17802075 AAGATCGGATCGGACTGAGGGTTGCAGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCAT
261 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * * * * *
17802140 TTTTCTTCGTCAGGGCACCATCG-TCAGAGCATCGTCGAAGAACTTGAACAGCGACATTGGGGTT
326 TTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTT
* * * *
17802204 CTGGCGATCGGGGGGCC-AGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
391 CCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
17802268 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCACTTAAAGAGCATTTGAGAT
456 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
17802333 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAT-GGGACACTTTTTTCAAATGGTC
521 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTC
** *
17802397 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGTAAAAATACAGGG
585 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * *
17802462 ATCACATCCACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCA
650 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTA
17802527 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
715 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * * *
17802592 TTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGTAGAAATATGAAGAT
780 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
** *
17802657 GCACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCT
845 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* *
17802709 CTTTGGCCGGCATAGTGCCCGACCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
1 CTCTGGCCGGCGTAGTG--C--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
**** * * * *
17802774 TTCATTCCCAGTCTAAGATCGGTTTGGACC-ATGGGTTGAGGTAGCAGGATCGACAGGACGTAGA
62 TTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGGTTGCGGCAGCAGGATCGACAGCACGCAGA
* * * * * *
17802838 GGGGGACCCGACTGATCCCTGACTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGTACGCT
126 GGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * *
17802903 CGTTTCGTGGGTTAACATAGGCATACGGAGTTCATTCCCAGACTAAGCATATGGAGTTCATTCCC
191 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* *** * * * * *
17802968 AGTCTAAGATTGGATTAGACTGAGGGTTACGACAGCACATGCTCGGCTCGGGCATATGCTGGTGC
256 AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * *
17803033 GGAATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATCGCCAGAGAACCTGACCGACGGCATTG
321 CGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* *
17803097 GGGTTCCTACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
386 GGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
17803162 GGCCCTTATATTGGCCTCCTATCCCTCATCAAGCCTCAAGAACTCACACCCCCTTAAAGAGCATT
450 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
** * *
17803227 TCTGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAA
515 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * *
17803292 TGGTTACAACATCTTCTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
580 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * *
17803357 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CTGTCTGAAAAAATTTTAAAAAATCCCAA
645 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCGAAAAAATTTTAAAAAATCCCGA
* * *
17803421 ACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACAT
709 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * *
17803486 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAGAAAAAT
774 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
*
17803551 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCT
839 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
17803609 CTCTGGCCGGCATAGCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGCCATACGGAGTTCA
1 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * ** *
17803674 TTCCCAGTCTAAGATTGGACCAGACTGA-GGTTATGGCAGCAGGATCGGCAGCACGCAGAGGGGG
66 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGG
* * * * * *
17803738 ACCCGACTGATCCTCGGCTTGTGCATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCATTT
131 ACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
*
17803803 CATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GATGTTCATTCCCAGTC
196 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA-GTTCATTCCCAGTC
* *
17803867 TAAGATCGGACCGGACCGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CGCA
260 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
** *
17803931 TTTTTCTTCACCGGGGCACCA----TC---G--T---CGGAGAACCTGACAGGCGGCATTGGGGT
325 TTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
* * * *
17803984 TCCG-CGATCGGCGGGGCC-GGGGGGTGTGCGCGCATGATGTTCGATGGGTGCTGGTACTTCGCT
390 TCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
17804047 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
454 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
17804112 ATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
519 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * *
17804177 CACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATATTTTTGTGCGTGCCAACAAAAATACAAG
584 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * * *
17804242 GATCACGTCTACCAAGATTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCTCGAACCGC
649 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
17804307 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
714 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * **
17804372 CTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGGCACATAGAAATATGAAGA
779 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* *
17804437 TGTTCCTAAACCCACCTACCACCCTATCGATCCACGACTTG-GCATCCCGTCT
844 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* *
17804489 CTCTGGCCGGCGTAGTGCCCGCCTGCCCATCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAG
1 CTCTGGCCGGCGTAGTGCCCGCC--CGC--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * *
17804554 TTCATTCCCAGTCTAAGATTGGACC-GAACCGAGGTTTGCGGTAGCAGGATCGATAGCACACAGA
62 TTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGA
* * * * * *
17804618 GGGGGACCC-GATCGATTCTCGGCTTGCGCATCCCACCCCTCTAGCCGGCTGAGCGCCCGCGCGC
126 GGGGGACCCGGCT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
** * *
17804682 TCCATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACAGAGTTCATTCC
190 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * *
17804747 CAGTCTAAGATCGGACAGGACCGAGGGTTGCAGCAGCACATGCTAGGCTCGGGCATGTGCTGGTG
255 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * *
17804812 CCGTATTTTTCTTCGTCGGGGCACCA----T-------T-GCCAGAGAACCCGACCGGCGG-AGT
320 CCGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCA-T
* * *
17804864 TGGGGTTCCGACGATCAGGGGGGCCGGGGGAGTGAGAGCACATGATGTGCGATGGGTGCTGGTAC
384 TGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
17804929 TTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
448 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
17804994 TTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
513 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
17805059 AATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTGCATGCCAAAAAAA
578 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAA
* * * * * *
17805124 ATACAAGGATCACATCTACTAAGTTTGGGGCCAAAAATCCTTTCGAAAAAAATTTAACAAATCCC
642 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * *
17805189 GAACTGCAAAAAGTTTCAAATATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
707 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
17805254 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACGTAGAAAT
772 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* *
17805319 ATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTCGCGCATCCCGTCT
837 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
17805379 CTCTGGCTGGTGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGTCTTAGGCATACGGAG
1 CTCTGGCCGGCGTAGTGCCCGCCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * ** *
17805444 TTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGAGT-GGTAGCACACAGA
62 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGA-TCGACAGCACGCAGA
* * * * * * * * * *
17805508 AGGGGACTCGACCGATCACCGGCTTGCGCTTCCCACCCTTCTGGCCGGATGAGCGCCTGCACGCT
126 GGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
17805573 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-T---GAG---A-T--C
191 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * *
17805623 -G-----GAT-----CGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGT
256 AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* ** * * * * *
17805677 CACATTTTTCTTCACCGAGGCACCATCG-TCGGAGCGTCGTCGAAGAACCTGACCGGCGGTATTG
321 CGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * * * ** * *
17805741 GGGTTCTGGCGATCAGGGGGACCAGGGGGGGTATGCTTACATGATGTGTGATGGGTGCTGCTACT
386 GGGTTCCGACGATC-GGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
17805806 TAGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGTA-AACTCACACCCCCTTAAAAAGCA
449 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-AGAACTCACACCCCCTTAAAGAGCA
*
17805870 TTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
513 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * * *
17805935 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTCCAAGCCAAAAAAAA
578 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * * *
17806000 TACAAGGATCACATCTGCTATGTTTGGCGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCG
643 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* * * *
17806065 AACCGCAAAAAATTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACG
708 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
17806130 TGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAGAAATGGCATTGGCACGCAGAAATA
773 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* *
17806195 TGAAGCTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCT
838 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* *
17806254 CTCTGGCCGGCGTAGTGCCAGCCCGTCCGCCCGCCTGCTCGCTCATTTCGTCTGTTGG-TTAGGC
1 CTCTGGCCGGCGTAGT----G--C--CCGCCCG-C--C-CGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
17806318 ATACGGAGTTCATTCCCAATCTAAGATTGGATCGGACCGAAGGTTGCGACAGCAGGATCGACAGC
54 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGC
* * * * * *
17806383 ACGCATAGGGGGACCCGACCGATCCCCAGCTTGCCCATCCCGCCCCTCTGGTCGGCTGAGCGCCC
119 ACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * *
17806448 GCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTT
184 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
*
17806513 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCCGCAGCACATGCTGGGCTCGGGCATGTG
249 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * ** * * ***
17806578 CTAGTGTCACTTTTTTCTTCACCAGGGCACCATCG-TCAGAGCATCATTGGAGAACCTGACCGGC
314 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGC
* * * *
17806642 AGCATTGGGGTTCTGGCGATCGGGAGGGCC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
379 GGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
17806706 GCTACTTGGCCCTTATATTGGCCCCCTGTCCCACATCAAACCTCGAGAAGTCACA---CCTT-AA
443 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* ** *
17806767 GAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAACTGTCTGAAAT-GTAAGAC--T
508 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
** * * * *
17806828 TGGC-AATGGCTC-C--ATTCTTGTACA--TCGAG-----AGCTGAA---CTTTGTTCGTG-C--
573 TTTCAAATGG-TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * * * *
17806876 C---AATACCAGGA-C-TGTCTACCCAGTGTGGGGCC---ACT-C--GCGAAGAAATTTT-AAGA
637 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * ** * * *
17806929 ATGCTCGGACCGGT---GTGCTTT--GAAGTCACTGAAAAATAGAAAGAAC-AGTCGATCTTG-C
702 AT-CCCGAACC-GTAAAAAG-TTTCAAAAATC-GTGAAAAATAG-AA-AACGAGTCG-TCTTGCC
* * * * **
17806987 ATGAAA-TTCAATCGTCAATGCCTAAGGGACCATTGTAAT-TATTT--GGGCC--AAAAATGGCA
760 ATGAAACTTC-A-CGTGAAGGCTTAAGGGACCATTGT-ATGAATTTACAAGCCATAAAAATGGCA
* *
17807046 TTGGCACGTA-AAATATGGACAGATG-GCGT---CCC-CCTA--ACCCTATCGATCCACGGCTTG
822 TTGGCACGCAGAAATAT-GA-AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
17807103 TGCATCCCGTCT
885 CGCATCCCGTCT
* * * * * * * * * *
17807115 CTCTGGCCGGCGTAGTACTCGCTCGTCCGTTCATTTCATCGATTAGCTTAGGCATACAGAGTTCA
1 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * *** * * ** * * * *
17807180 TTCGCAGTCTAAGATCAGAATGGACCAAAGGTTGCTACAGCAAGATCGATAGCATGCAGAGGTGG
66 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGG
* * ** * * ** * *
17807245 ACCCAGCCGATCCCCAACTTGTGCATCCCGCCCCTCTGGCTGGCTGAATGCCCGCATGCTCATTT
131 ACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
17807310 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A--C-
196 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * * *
17807359 -----C--A---GACTGAGGGTTGTGGCAGCACATGCTGGCCTCTGGCTTGTGCTGGTGCCACAT
261 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * *
17807414 TTTTCTTCGCCGGGGCACCATCAC-CGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGAGGTT
326 TTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTT
** *
17807478 CCGACGATCGGGGGGGCCGGGGGGGTGTAAGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCC
391 CCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
17807543 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATACCCCCTTAAAGTGCATTTGAGA
455 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
17807608 TTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-TCTTTTTCAAATGGT
520 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT-TTTTTCAAATGGT
* * * * * *
17807672 CACAAAATCTTGTACACTTTGAGTTTTTAGCCGAATGTTTTTGTGCATGCCAATAGAGATACAAG
584 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * *
17807737 GATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTAAAAAAATCCCGAACC-T
649 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
* * * * *
17807801 CAAAAAGTTTCTAAAATCGTGAAAAATTGAAAACGAGTCGTCTTGCCGTGAAAGTTCACATGAAG
714 -AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * * *
17807866 GCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGTATTGCCATGCAGAAATATGAAG
778 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * *
17807931 ATGTGCCTAAACCCACCTACGACCCTATCGATCCATGGCTTGCGCATCCCATCT
843 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* *
17807985 CTGTGGCCGGTGTAGTGCCCGCCCACTTGTTCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
1 CTCTGGCCGGCGTAGTGCCCG-CC-C--G----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * *
17808050 GAAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTACGGTAGCAGGATC-AGCAGCACG
58 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACG
* * * * * * * *
17808114 TAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCACGCCCCTCTGGTCGGCTGAGCACCTGCA
122 CAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * *
17808179 CGCTCGTTTCGTGGGTTGACGTAGGCATACGGAGTTTAGTCCCAGTCTAAGCATATGGAGTTCTT
187 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * *
17808244 TCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAAGTGCTG
252 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * *
17808309 GTGACGCATTTCTCTTCGCCGGGGCACCATCG-TCGGAGCATCACCGGAGAACCTGACCGACGGC
317 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* * * *
17808373 ATTAGGGTTCTGGCGAT--------C-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
382 ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
17808429 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACTCCCCCTTAAAGCGC
447 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
17808494 ATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
512 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
17808559 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGTATGCCAAAAAAA
577 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * * * *
17808624 ATACAAGGATCTCATCTACCAAATTTGGGTCCAAAAATCCTACCAAAAAAATTTTAAAAAATCCC
642 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * * * * *
17808689 AAACCGTAAAAAGTTTTAAAAATCGTGAAAAA-AAAAAATGAGTCATCTTGCCGTGAAACTTCAC
707 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
17808753 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGCAG-AAT
772 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* *
17808817 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTCGCGCATCCCGTCT
837 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* ** * *
17808877 CTCTGG-CGG-GCACCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGTTTAGGCATACGGAGTTC
1 CTCTGGCCGGCGTA-GTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * * * * **
17808940 ATTGCTAGTCTAGGATCAGACCAGATCGAGGGTTACGGTAGCAAGATC-AGCAGCACACAGAGAT
65 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGG
* ** * * * * * *
17809004 GGAACCGGCCAATCCACGGCTTGCGCATCCCACCCCGCTGGCCGACTGAGCGCCCACACGCTCAT
129 GGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * * * *
17809069 TTCGTGGGTTGACTTAGGCATACGGAGTTTATTCTCAATCTAAGCATTA-GGAGCTCATTCTC-G
194 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA-TACGGAGTTCATTCCCAG
* *
17809132 ATCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
258 -TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* ** * * * * * * * *
17809197 GTATTTTTCTTAATCGGGGCACCATGGC-CAGTGCACCGTCGAAGAACCTGACCAGCAGCATT-G
322 GCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGG
* * * *
17809260 GGTTCCGATGATCGGGGGTGCCGAAGGGGGGGTGTACGCCCATGATGTGCGATTGGTGCTGGTAC
387 GGTTCCGACGATCGGGGG-GCC---GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
17809325 TTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCA
448 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
17809390 TTTCAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCT-AGAATGGGGACACTTTTTTC
513 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTC
* * *
17809454 AAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAA
577 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
17809519 ATACAAGGATCACGTTTACCAAGTATGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCC
642 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * ** **
17809584 CAACCTTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACTTGTCGTCTTGCCATGAAACTTCAC
707 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
17809649 GTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAA
772 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG-AAA
* **
17809714 TATGAAGATGTGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTAAGCATCCCGTCT
836 TATGAAGA--TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
17809777 CTCTGCCCGGCGTAGTGCCCGCCCGTCTGCTTGCTCGCTCGTTTCATCGGTTGGCTTAGGCTTAT
1 CTCTGGCCGGCGTAGTGCCCG-CC--C-GC---C-CGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * * * **
17809842 AGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGAGTTGTGGTAGCAGGATC-AGTAGCATA
58 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACG
* * * * * * *
17809906 CAGAAGGAGACCC-GATCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGCCAGC
122 CAGAGGGGGACCCGGCT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * * *
17809970 ACGCTTGTTTCGTGGGTTGACATAGGCATACGGAGTTTATTCCCAGTCTAAGCATACGAAGTTCC
186 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* ** * * * *
17810035 TTCCCAGTCTAAGATCGGACCAGACCGAGCATTTC-GCAGCACATGCAGGGCTTGGGCATGTGTT
251 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * * *
17810099 GGTGTCACTTTTTTCTTCGTCGGGG---CA-----C----CATCGCCGGAGAACCTGATCGACGG
316 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGG
** * *
17810152 CATTAAGGTTCCGACGATCGGGGGGCC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGT
381 CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
**
17810216 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATACCCTTAAAGAG
446 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
17810281 CATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATTGGGGACGCTTTTTT
511 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
*
17810346 TAAATGGTCAC
576 CAAATGGTCAC
17810357 GAACCAAAAA
Statistics
Matches: 33281, Mismatches: 4930, Indels: 3527
0.80 0.12 0.08
Matches are distributed among these distances:
824 110 0.00
825 83 0.00
827 1 0.00
828 4 0.00
829 29 0.00
830 24 0.00
831 5 0.00
832 2 0.00
833 183 0.01
834 7 0.00
835 5 0.00
836 139 0.00
837 273 0.01
838 6 0.00
839 18 0.00
840 2 0.00
842 2 0.00
843 8 0.00
845 1 0.00
846 11 0.00
847 4 0.00
848 3 0.00
849 19 0.00
850 166 0.00
851 66 0.00
852 9 0.00
853 8 0.00
854 25 0.00
855 56 0.00
856 92 0.00
857 236 0.01
858 376 0.01
859 156 0.00
860 49 0.00
861 77 0.00
862 153 0.00
863 17 0.00
864 120 0.00
865 273 0.01
866 710 0.02
867 667 0.02
868 230 0.01
869 300 0.01
870 367 0.01
871 284 0.01
872 268 0.01
873 197 0.01
874 1073 0.03
875 701 0.02
876 403 0.01
877 214 0.01
878 701 0.02
879 1087 0.03
880 272 0.01
881 494 0.01
882 248 0.01
883 599 0.02
884 1272 0.04
885 623 0.02
886 397 0.01
887 298 0.01
888 1028 0.03
889 953 0.03
890 576 0.02
891 502 0.02
892 841 0.03
893 318 0.01
894 1744 0.05
895 1809 0.05
896 205 0.01
897 163 0.00
898 476 0.01
899 571 0.02
900 1133 0.03
901 1023 0.03
902 1046 0.03
903 2074 0.06
904 851 0.03
905 555 0.02
906 81 0.00
907 135 0.00
908 495 0.01
909 206 0.01
910 5 0.00
911 9 0.00
913 2 0.00
914 2 0.00
915 1 0.00
916 1 0.00
918 1 0.00
919 1 0.00
920 1 0.00
921 1 0.00
926 4 0.00
927 6 0.00
928 7 0.00
929 18 0.00
930 8 0.00
931 219 0.01
932 541 0.02
933 10 0.00
934 7 0.00
935 14 0.00
936 2 0.00
937 2 0.00
938 6 0.00
941 5 0.00
942 2 0.00
943 5 0.00
944 5 0.00
945 4 0.00
946 1 0.00
948 2 0.00
949 22 0.00
950 12 0.00
951 10 0.00
952 16 0.00
953 8 0.00
954 4 0.00
955 13 0.00
956 9 0.00
957 2 0.00
958 2 0.00
960 1 0.00
961 2 0.00
963 1 0.00
964 4 0.00
965 3 0.00
966 3 0.00
968 1 0.00
970 5 0.00
971 12 0.00
972 8 0.00
973 21 0.00
974 19 0.00
975 9 0.00
976 28 0.00
977 21 0.00
978 15 0.00
979 3 0.00
980 4 0.00
982 2 0.00
983 3 0.00
984 5 0.00
985 4 0.00
986 6 0.00
987 1 0.00
988 8 0.00
989 3 0.00
992 6 0.00
993 7 0.00
994 4 0.00
995 6 0.00
996 3 0.00
997 4 0.00
998 5 0.00
999 1 0.00
1002 10 0.00
1003 10 0.00
1004 11 0.00
1005 10 0.00
1006 5 0.00
1007 5 0.00
1008 9 0.00
1009 4 0.00
1010 4 0.00
1011 7 0.00
1012 9 0.00
1013 17 0.00
1014 28 0.00
1015 15 0.00
1016 17 0.00
1017 9 0.00
1018 19 0.00
1019 14 0.00
1020 10 0.00
1021 37 0.00
1022 20 0.00
1023 8 0.00
1024 106 0.00
1025 214 0.01
1026 235 0.01
1027 196 0.01
1028 129 0.00
1029 139 0.00
1030 230 0.01
1031 95 0.00
1032 124 0.00
1033 90 0.00
1034 61 0.00
1035 51 0.00
1036 75 0.00
1037 64 0.00
1038 195 0.01
1039 74 0.00
1040 124 0.00
1041 114 0.00
1042 78 0.00
1043 51 0.00
1044 59 0.00
1045 56 0.00
1046 56 0.00
1047 243 0.01
1048 245 0.01
1049 30 0.00
1050 26 0.00
1051 50 0.00
1052 22 0.00
1053 162 0.00
1054 23 0.00
1055 25 0.00
1056 14 0.00
1057 11 0.00
1058 17 0.00
1059 14 0.00
1060 97 0.00
1061 37 0.00
1062 36 0.00
1063 19 0.00
1064 43 0.00
1065 8 0.00
1066 21 0.00
1067 16 0.00
1068 44 0.00
1069 94 0.00
1070 61 0.00
1071 76 0.00
1072 148 0.00
1073 99 0.00
1074 44 0.00
1075 126 0.00
1076 26 0.00
1077 22 0.00
1078 22 0.00
1079 19 0.00
1080 6 0.00
1081 11 0.00
1082 2 0.00
1083 8 0.00
1084 6 0.00
1085 80 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGG
ACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
TTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTT
CCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAA
AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
Found at i:17776771 original size:26 final size:26
Alignment explanation
Indices: 17776735--17776787 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17776725 GTTGACTTAG
17776735 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17776761 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17776787 G
1 G
17776788 ATCGTATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17777663 original size:26 final size:26
Alignment explanation
Indices: 17777627--17777679 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17777617 GTTGACTTAG
*
17777627 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17777653 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17777679 G
1 G
17777680 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17781177 original size:26 final size:26
Alignment explanation
Indices: 17781141--17781193 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17781131 GTTGACTTAG
17781141 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17781167 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17781193 G
1 G
17781194 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17781922 original size:26 final size:27
Alignment explanation
Indices: 17781886--17781936 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
17781876 GTTGGCTTAG
17781886 GCATACGGAG-TCATTCCCAGTCTAAC
1 GCATACGGAGTTCATTCCCAGTCTAAC
17781912 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
17781937 CGATCAGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 10 0.42
27 14 0.58
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (27 bp):
GCATACGGAGTTCATTCCCAGTCTAAC
Found at i:17782110 original size:26 final size:26
Alignment explanation
Indices: 17782073--17782125 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17782063 GTTGACTTAG
17782073 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
17782099 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
17782125 G
1 G
17782126 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:17785671 original size:26 final size:26
Alignment explanation
Indices: 17785635--17785687 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17785625 GTTTAGTTAG
* *
17785635 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17785661 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17785687 G
1 G
17785688 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17786937 original size:26 final size:26
Alignment explanation
Indices: 17786901--17786956 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
17786891 TGGGTTGACT
* *
17786901 TAAGCATACAGAGTTCATTCTCGGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
17786927 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
17786953 TAAG
1 TAAG
17786957 ATTGGACATG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:17787834 original size:26 final size:26
Alignment explanation
Indices: 17787798--17787850 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17787788 GTTGACTTAG
17787798 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17787824 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17787850 G
1 G
17787851 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17788736 original size:26 final size:26
Alignment explanation
Indices: 17788700--17788750 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17788690 TTGACTTAGG
17788700 CATACAGAGTTCACTCCCAGTCTAAC
1 CATACAGAGTTCACTCCCAGTCTAAC
* *
17788726 CATACGGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCACTCCCAGTCTAA
17788751 AATCAAATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCACTCCCAGTCTAAC
Found at i:17793191 original size:26 final size:26
Alignment explanation
Indices: 17793140--17793192 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17793130 GGTTGACTTG
* *
17793140 GCATGCGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
*
17793166 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
17793192 G
1 G
17793193 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAACCTAA
Found at i:17794969 original size:26 final size:26
Alignment explanation
Indices: 17794933--17794985 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17794923 GTTCACTTAG
17794933 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17794959 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17794985 G
1 G
17794986 ATTGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17796752 original size:26 final size:26
Alignment explanation
Indices: 17796702--17796754 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17796692 GTTGACTTAG
* *
17796702 GCATACGGAGTTCAATCCGAATCTAA
1 GCATACAGAGTTCAATCCCAATCTAA
* *
17796728 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAATCTAA
17796754 G
1 G
17796755 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAATCTAA
Found at i:17797166 original size:884 final size:884
Alignment explanation
Indices: 17795833--17810356 Score: 17171
Period size: 894 Copynumber: 16.4 Consensus size: 884
17795823 GTTGACTTAG
* * * *
17795833 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCTCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
17795898 CTCAGGCACGTGCTGGTGCCGCATATTTCTTCGTCGGGGCACTATCACCGGAGCATCGCCGGCGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG------CA-C----CATCGTCGGAGA
* * ** * * *
17795963 ACCTGACTGACGGCATTTTGGTTCCGACGATCGGAGGGGTCGGGGTGGTGTGCGCACGTGATGTG
120 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTG
* * *
17796028 CGATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTTGAGAACTCAC
184 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
17796093 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * **
17796158 GGGGACACTTTTTTCAAATGGTCACAAAAGCTTGTACACTTCGAGTTCTTAGCTGAATGCTTTTG
314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** *
17796223 TGCATGCCAACAAAAATACAAGGATCATTTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAAA
379 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * *
17796288 ATTTGAAAAAATCCCTAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAGCGAGTCGTCTT
444 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * * * *
17796353 GCCATGGAATTTCATGTGAAGGCATAAGGGACCATTGTATGAATTTAAAAGTCATAAAAATGGCA
509 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
17796418 TTAGCACGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
574 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
17796483 TATCCCGTCTCTCTAGCCGGCATAGTGCCCGCCCACACGCTCATTTCGTCGGTTGGCTTAGGCAT
639 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* *
17796548 ACGGAGTTCATTCCCAGTCTAAGATGGGA-CAGACCGAGGGTTGTGACAGCAGGATCGGCAGCAC
704 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCAC
* ** * *
17796612 ACAGAGGGGGACCCGGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTAGCTGAGTGCCCA
769 GCAGAGGGGGACCC-GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * *
17796676 TACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAATCCGAATCTAA
833 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
17796728 GCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTACGGCAACACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
17796793 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGC
** ** *
17796858 GAAATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGAGCGATGGGTGCTG
131 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
** * * *
17796923 GTACTTGGCCCTTATATTGGGTCCCTATCCCTCATCCAACCTTGAGAACTCACACCCCCTTAAAA
196 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
17796988 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAATGGGGATATTTT
261 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTT
* *
17797053 TTTCAAATGGTCACAAAATCTTCTACACTTCGAGCTTTTAGCTGAATTTTTTTGTGCATGCCAAC
325 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
17797118 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCATAACTCCTTTCGAAAAAATTTAAAAAAA
390 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAA
** * * * * * *
17797183 TCAGGAACCGCAAAAAGTTTCAAAAATAGTGAAAAATCGAAAACGATTCATTTTGCCATGAAACT
455 TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
17797248 TGATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCATGCAG
520 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* *
17797313 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCATCTC
585 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
*
17797378 TCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
650 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * *
17797443 TCCC-GATCTCAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGG
715 TCCCAG-TCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* * * * * * * * *
17797507 ACCCGGCCGAACCACGGCTTGCTCATCTCGCCCCTCTGGCCGACTGAGCACTCGTACGCTCGTTT
779 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
17797572 CGT-GG--G---T-----T---GA---C-TT---AG-----
844 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
17797587 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
17797652 CTGGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---G--T---CGGAGA
*
17797717 ACCTGACCGGTGGCATTGGGG-TCC-AGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
120 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
17797780 CGATGGTTGCTGGTA-TCT-GCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCA
184 CGATGGGTGCTGGTACT-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
17797843 CACCCCTTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGATA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
17797908 CGGGGACAGTTTTTTCAAATGGTCACAAAATCTTCTACACTTCAAGTTTTTAGCTGAATTTTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
17797973 GTGCAT-CCAAAGAAAAATACAAGGATCACGTATACCATGTTTGGAGCCAAAACTCCTTTCGAAA
378 GTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * *
17798037 AAATTTTAAAAAATCCCGAACTGTAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCGTC
442 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
17798102 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-AAAAATGG
507 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * **
17798166 CATTGGCACGTAGAAATATGAAGATATGCCTGAACCCACCTACCACTTTATCGATCCACGGCTTG
572 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
17798231 CGCATCCCGTCTCTCTGGCAGGCGTAGCGCCTGGCTGCCCACCCGCCGTTCGTTTCATCGGTTGG
637 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCC---C-GCCCGCCCG-C--TCGTTTCGTCGGTTGG
* * * * * * *
17798296 CTTAGGCATACGGAGTTGATTCTCAGTCTAAGATAGGACCAGACCAAGGGATGCGGCTGCAGGAT
695 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGAT
* ** *
17798361 CGGCAGCATGCAGAGGGGGACCCGACCGA-CCCCTGGCTTGCGCATCCCATCCCTCTGGCCGACT
760 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * * *
17798425 GAGCGCCCGTACGCTCGTTGCATGAGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAA
824 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
17798486 GCATACGGAGTTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTG-GGCAGCACATGCTGG
1 GCATACGGAG-TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* ** * * *
17798550 GCTCGAGCACATGCTAGTGTCGCATTTTTGTTCGTCGGGGCAGCATCATCGAAGCATCACAGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-C--CATC---G--T--C-GGAG
* * *
17798615 AACCTGATCGACGGCATTGGGGTTCCGACGATCGGGGGAGCCGGGGGGTGTGCGCACATGATGTG
119 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * * *
17798680 AGATGTGTGCTGGTACTTGGCCCATATATTGGCCCCCTGTCCTTCATCAAACCTCAAGAACTCAC
184 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
17798745 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
17798810 GGGGACACTTTTTTCAAACGGTCACAAAATCTCGTACACTTCGAGTTTTTAGCTGAATTCTTTTG
314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
17798875 TGCACGCCAACAAAAATACAAGGATCACGTCTACCATGTTTTGGGCCAAAACTCCTTTCGAAAAA
379 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * *
17798940 ATTTTAAAAAATCCCTAACCGTAAAAAGGTTT-GAAAATCATGAAAAATAGAAAATGAGTCGTCT
444 ATTTTAAAAAATCCCGAACCGTAAAAA-GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
17799004 TGCCATGGAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
17799069 ATTGACATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTAC
573 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
17799134 GCATCCCGTCTCTCTAGCCGGCGTAGTGCTCGCCCGCACGCTTGTTTCGTCGGTTGGCTTAGGCA
638 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * *** * * * **
17799199 TACGGAGTTGATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACAGTAGCAGAATTGATAGCA
703 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCA
* * * * **
17799264 CACAGAGGAGGACCCGATCGACCCCCGGCTTGCGCATCCCATCCCTCTGGCCGGCTGAGCGCCCG
768 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* *
17799329 CACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
833 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
17799381 GCATACGGAGTTCATTCCTAGTCTAAGATCACATCGGACCGATGGTTG-GGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
17799445 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCAGCATCATCGGAGCATCACAGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-C--CATC---G--T--C-GGAGA
* * * *
17799510 ACCTGATCGACGGCATTGGGGTTCCGACGATCGGGGGAGCCGGGGGGTGTGCGCACATGATGTGA
120 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
17799575 GATGTGTGCTGGTACTTGGCCCGTATATTGGCCCCCTGTCCCTCATCAAACCTCAAGAACTCACA
185 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
17799640 CCCCCTTAAAGAGCATTTGAGATTTTACGGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
250 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
17799705 GGGACACTTTTTTCAAACGGTCACAAAATCTCGTACACTACGAGTTTTTAGCTGAATTCTTTTGT
315 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
17799770 GTACGCCAACAAAAATACAAGAATCACGTCTACCATGTTTCGGGCCAAAACTCCTTTCGAAAAAA
380 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* * *
17799835 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
445 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
17799900 CCATGAAACTTCACTTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
510 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
17799965 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
575 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
17800030 ATCCTGTCTCTCTAGCTGACGTAGTGCCCGCCCACCCGTCCGCATGCTCGTTTCGT-TGTCTGGC
640 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCG-CC-C--GCTCGTTTCGTCGGT-TGGC
* * ** * *
17800094 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTACGGTAGTAGGATC
696 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATC
* * ** * * *
17800159 GGTAGCACGCAGAGGGGGACCCGATCGATCCTTGGCTTGCGCAT-----CCTTCTAGCCGACTGA
761 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
17800219 GCACCCGCACGCTGGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAA
826 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
17800278 GCATACGGAGTTCATTCCAAGTCTAAGATAGGACCGGACCGAGGGTTGCCACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
17800343 CTCGGGCATGTGCTGCTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAGAACCTGACCGGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGC
* *
17800408 GGCATTGGGGTTCCGACGA-C--GGGGGCCGGGGGGTGTG-TCACTACTGGATGTTCGATGGGCT
131 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCAC-A-T-GATGTGCGATGGG-T
*
17800469 GCTGGTACTTGGCCCTTATCTTGGCCCCCCTATCCCTCATCAAACCTCGAGCAACTCACACCCCC
192 GCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAG-AACTCACACCCCC
* * *
17800534 TTAAAGAGCATTTGAGATTTGTA-TGG-TTGCTGCGCACGTAGCCATTAAAAGTGTTTGAAATGA
255 TTAAAGAGCATTTGAGATTT-TACAGGTTTGCTGC-CA-GTAGCCATT-AAAGTGTCTGAAATGG
* *
17800597 GGACAGTTTTTTCCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGT
316 GGACACTTTTTT-CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
17800662 GCATGCCAACAAAAATAAAAGGATCACGTCTACCCAGTTTGGGGCCAAAAATCCTTTCGAAAAAA
380 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* * * *
17800727 TTTTAAAACATCCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTG
445 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
**
17800792 CCATGAAACTTCACAAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
510 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*** * * * * **
17800857 TGGCACATAGAAATATGAAGATGTGCCAAAACCCACCTACCACTCTATCGATCCATGGCTTACTT
575 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
17800922 ATCCCGTCTCTCTGGCCAGCATAGCGCCTGCCCGCCCGCTCATTTCGTCGGTTGGTTTAGGCATA
640 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *
17800987 CGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGA-GGTTGTGGCAGCAGGATCAGCAGCATG
705 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACG
* * * * *
17801051 CAGAGGGGGACCC-AGCTGATCCTCGGCTTGTGCATCTCGCCCCTCTGGCCGGTTGAGCGCCCGC
770 CAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
** * *
17801115 ACATTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCGAA
834 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * *
17801166 GCATTCCGAGTTCATTCCCAGTCTAAGATCAGATAGGATCGAGGGTTGCGACAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
17801231 CTCGGGCATGTGCTGGTGCCACATTTTT-TTCGTCGGGGTACCATCGTAGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC------G--T---CGGAGA
* * * * *
17801295 ACCTGACCGGCGGTATTGGGGTTTCGGCGAT----------GGGGGGTGTGTGCACATTATGTGC
120 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
17801350 GATAGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
185 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
17801415 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
250 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
17801480 TGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCTGAGTTTTTAGCTGAATTTTTTTT
315 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAA-TTTTTTT
* * * * *
17801544 ATGCGTGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
378 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* *
17801609 AATTTTAAAACATCCCGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
443 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
17801674 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
17801739 ATTGGCATGCAAAAATATGAAGATGGGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
573 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * * *
17801804 GCATCCCCTCTCTCTGGCCAACGTAGTGCTCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCA
638 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
17801869 TACGGAGTTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAGGATCGACAGGA
703 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCA
**
17801934 CGCAGAGGGGGACCCGATTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
768 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * *
17801999 CACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGCCAAA
833 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
17802051 GCATACAGAGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
17802116 CTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCAGGGCACCATCGTCAGAGCATCGTCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC---G--TCG--G-AGA
* * * * * * * *
17802181 ACTTGAACAGCGACATTGGGGTTCTGGCGATC-GGGGGGCCAGGGGGTGTGCACACATGATGTGC
120 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
17802245 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
185 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
17802310 CCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAT
250 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAAT
17802375 -GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * * * *
17802439 TGCATGCCAGTAAAAATACAGGGATCACATCCACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
379 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* *
17802504 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
444 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
17802569 GCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
509 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * ** *
17802634 TTGCCATGTAGAAATATGAAGATGCACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
574 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
17802699 CATCCCGTCTCTTTGGCCGGCATAGTGCCCGACCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
639 CATCCCGTCTCTCTGGCCGGCGTAGTG--C--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
**** * * *
17802764 GCATACGGAGTTCATTCCCAGTCTAAGATCGGTTTGGACC-ATGGGTTGAGGTAGCAGGATCGAC
700 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGGTTGTGGCAGCAGGATCGGC
* * * * * * *
17802828 AGGACGTAGAGGGGGACCCGACTGATCCCTGACTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCG
764 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
17802893 CCCGTACGCTCGTTTCGTGGGTTAACATAGGCATACGGAGTTCATTCCCAGACTAA
829 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *** * * * *
17802949 GCATATGGAGTTCATTCCCAGTCTAAGATTGGATTAGACTGAGGGTTACGACAGCACATGCTCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
17803014 CTCGGGCATATGCTGGTGCGGAATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC---G--TCG---GAGA
* *
17803079 ACCTGACCGACGGCATTGGGGTTCCTACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
120 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
* * *
17803144 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAGCCTCAAGAACTCAC
184 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
** *
17803209 ACCCCCTTAAAGAGCATTTCTGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
17803274 GGGGACATTTTTTTCAAATGGTTACAACATCTTCTACACTTCGATTTTTTAGCTGAATTTTTTTG
314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
17803339 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CTGTCTGAAAA
379 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAA
* * *
17803403 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCT
443 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
17803468 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
17803533 ATTGGCATGCAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
573 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
17803598 GCATCCCGTCTCTCTGGCCGGCATAGCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGCCA
638 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * *
17803663 TACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGA-GGTTATGGCAGCAGGATCGGCAGCA
703 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCA
* * * * *
17803727 CGCAGAGGGGGACCCGACTGATCCTCGGCTTGTGCATCCCGCCCCTCTAGCCGACTGAGCGCCCG
768 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* *
17803792 CACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
17803844 GCATAC-GATGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCACATGCTGG
1 GCATACGGA-GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
** *
17803908 GCTCGGGCATGTGCTGGTG-CGCATTTTTCTTCACCGGGGCACCATCGTCGGAGAACCTGACAGG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGG
* * *
17803972 CGGCATTGGGGTTCCG-CGATCGGCGGGGCCGGGGGGTGTGCGCGCATGATGTTCGATGGGTGCT
130 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
17804036 GGTACTTCGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
195 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
17804101 GAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
17804166 TTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATATTTTTGTGCGTGCCAAC
325 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
17804231 AAAAATACAAGGATCACGTCTACCAAGATTGGGGCCAAAACTCC-TTCTGAAAAAATTTAAAAAA
390 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAA
* *
17804295 ATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
454 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * ***
17804360 TTCACGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGGCACATA
519 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* *
17804425 GAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGACTTG-GCATCCCGTCT
584 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* *
17804489 CTCTGGCCGGCGTAGTGCCCGCCTGCCCATCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAG
649 CTCTGGCCGGCGTAGTGCCCGCC--CGC--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * ** *
17804554 TTCATTCCCAGTCTAAGATTGGACC-GAACCGAGGTTTGCGGTAGCAGGATCGATAGCACACAGA
710 TTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGA
* * * * * *
17804618 GGGGGACCCGATCGATTCTCGGCTTGCGCATCCCACCCCTCTAGCCGGCTGAGCGCCCGCGCGCT
774 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
**
17804683 CCATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
17804729 GCGTACAGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
17804794 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATTGCCAGAGAACCCGACCGGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGC
* * *
17804859 GG-AGTTGGGGTTCCGACGATCAGGGGGGCCGGGGGAGTGAGAGCACATGATGTGCGATGGGTGC
131 GGCA-TTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGC
* *
17804923 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCCCCTTAA
194 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
17804988 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGAAATGGGGACACTT
259 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
17805053 TTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTGCATGCCA
324 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCA
* * * * * *
17805118 AAAAAAATACAAGGATCACATCTACTAAGTTTGGGGCCAAAAATCCTTTCGAAAAAAATTTAACA
388 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAA
* * *
17805183 AATCCCGAACTGCAAAAAGTTTCAAATATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
453 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
17805248 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACGT
518 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
17805313 AGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTCGCGCATCCCGTC
583 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
17805378 TCTCTGGCTGGTGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGTCTTAGGCATACGGA
648 TCTCTGGCCGGCGTAGTGCCCGCCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * *
17805443 GTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGAGT-GGTAGCACACAG
709 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGA-TCGGCAGCACGCAG
* * * * * * * *
17805507 AAGGGGACTCGACCGATCACCGGCTTGCGCTTCCCACCCTTCTGGCCGGATGAGCGCCTGCACGC
773 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
17805572 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
838 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
17805615 -C-T---GAG---A-T--C-G-----GAT-----CGGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
17805658 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCACCGAGGCACCATCGTCGGAGCGTCGTCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---T-----CGTCG--G-AGA
* * * * * * **
17805723 ACCTGACCGGCGGTATTGGGGTTCTGGCGATCAGGGGGACCAGGGGGGGTATGCTTACATGATGT
120 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGT
* * * *
17805788 GTGATGGGTGCTGCTACTTAGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGTA-AACTC
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-AGAACTC
* *
17805852 ACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAA
247 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
17805917 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
312 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * * * * *
17805982 TTTCCAAGCCAAAAAAAATACAAGGATCACATCTGCTATGTTTGGCGCCAAAACTCCTTCCGAAA
377 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * * * *
17806047 AAATTTTAAAAAATCTCGAACCGCAAAAAATTTCAAAAATCATGAAAAATAGAAAACAAGTCGTC
442 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
17806112 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAGAAATGG
507 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
17806177 CATTGGCACGCAGAAATATGAAGCTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
572 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
17806242 CGCATCCCATCTCTCTGGCCGGCGTAGTGCCAGCCCGTCCGCCCGCCTGCTCGCTCATTTCGTCT
637 CGCATCCCGTCTCTCTGGCCGGCGTAGT----G--C--CCGCCCG-C--C-CGCTCGTTTCGTCG
* * * * * * *
17806307 GTTGG-TTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGATCGGACCGAAGGTTGCGACAGC
690 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGC
* * * * *
17806371 AGGATCGACAGCACGCATAGGGGGACCCGACCGATCCCCAGCTTGCCCATCCCGCCCCTCTGGTC
755 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
17806436 GGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
820 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
17806501 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCCGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** *
17806566 CTCGGGCATGTGCTAGTGTCACTTTTTTCTTCACCAGGGCACCATCGTCAGAGCATCATTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC---G--TC---GGAGA
* * * * *
17806631 ACCTGACCGGCAGCATTGGGGTTCTGGCGATCGGGAGGGCCAGGGGGTGTGCGCACATGATGTGC
120 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
17806696 GATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTGTCCCACATCAAACCTCGAGAAGTCACA
185 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
17806761 ---CCTT-AAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAACTGTCTGAAAT-
250 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
** * ** * *
17806820 GTAAGAC--TTGGC-AATGGCTC-C--ATTCTTGTACA--TCGAG-----AGCTGAA---CTTTG
315 GGGACACTTTTTTCAAATGG-TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * * *
17806869 TTCGTG-C--C---AATACCAGGA-C-TGTCTACCCAGTGTGGGGCC---ACT-C--GCGAAGAA
379 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * ** * * *
17806920 ATTTT-AAGAATGCTCGGACCGGT---GTGCTTT--GAAGTCACTGAAAAATAGAAAGAAC-AGT
444 ATTTTAAAAAAT-CCCGAACC-GTAAAAAG-TTTCAAAAATC-GTGAAAAATAG-AA-AACGAGT
* * * * **
17806978 CGATCTTG-CATGAAA-TTCAATCGTCAATGCCTAAGGGACCATTGTAAT-TATTT--GGGCC--
503 CG-TCTTGCCATGAAACTTC-A-CGTGAAGGCTTAAGGGACCATTGT-ATGAATTTACAAGCCAT
* * *
17807036 AAAAATGGCATTGGCACGTA-AAATATGGACAGATG-GCGT---CCC-CCTA--ACCCTATCGAT
564 AAAAATGGCATTGGCATGCAGAAATAT-GA-AGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * * * * *
17807093 CCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTACTCGCTCGTCCGTTCATTTCATCGAT
627 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * *** * * *
17807158 TAGCTTAGGCATACAGAGTTCATTCGCAGTCTAAGATCAGAATGGACCAAAGGTTGCT-ACAGCA
692 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG-TGGCAGCA
* ** * * ** * *
17807222 AGATCGATAGCATGCAGAGGTGGACCC-AGCCGATCCCCAACTTGTGCATCCCGCCCCTCTGGCT
756 GGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
** * *
17807286 GGCTGAATGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
820 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
17807351 G-AT-C--AG---------A--C------C--A---GACTGAGGGTTGTGGCAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
17807390 CTCTGGCTTGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG------CA-C----CATCGTCGGAGA
* * **
17807455 ACCTGACTGGCGGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTAAGCACATGATGTG
120 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
17807520 CGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAT
184 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
17807585 ACCCCCTTAAAGTGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
17807650 GGGGACA-TCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCCGAATGTTTTT
314 GGGGACACT-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
17807714 GTGCATGCCAATAGAGATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTTCAAAAA
378 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * *
17807779 AATTTAAAAAAATCCCGAACC-TCAAAAAGTTTCTAAAATCGTGAAAAATTGAAAACGAGTCGTC
443 AATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
17807843 TTGCCGTGAAAGTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGG
507 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
17807908 TATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCATGGCTTG
572 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
17807973 CGCATCCCATCTCTGTGGCCGGTGTAGTGCCCGCCCACTTGTTCACCCGCTCGTTTCGTCGGTTG
637 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-C--G----CCCGCTCGTTTCGTCGGTTG
* * * ** *
17808038 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTACGGTAGCAGGA
694 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGA
* * * * *
17808103 TCAGCAGCACGTAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCACGCCCCTCTGGTCGGCT
759 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
17808168 GAGCACCTGCACGCTCGTTTCGTGGGTTGACGTAGGCATACGGAGTTTAGTCCCAGTCTAA
824 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
17808229 GCATATGGAGTTCTTTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
17808294 CTCGGGCAAGTGCTGGTGACGCATTTCTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC---G--T---CGGAGA
* * * * *
17808359 ACCTGACCGACGGCATTAGGGTTCTGGCGAT---------CAGGGGGTGTGCGCACATGATGTGC
120 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
17808415 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACT
185 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
17808480 CCCCCTTAAAGCGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
250 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
17808545 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGT
315 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * * * ** *
17808610 GTATGCCAAAAAAAATACAAGGATCTCATCTACCAAATTTGGGTCCAAAAATCCTACCAAAAAAA
380 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* * * * *
17808675 TTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAA-AAAAAATGAGTCATCTTG
445 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
17808739 CCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCAT
510 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
17808804 TGGCATGCAG-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTCGCGC
575 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* ** * *
17808868 ATCCCGTCTCTCTGG-CGG-GCACCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGTTTAGGCAT
640 ATCCCGTCTCTCTGGCCGGCGTA-GTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * ** * * *
17808931 ACGGAGTTCATTGCTAGTCTAGGATCAGACCAGATCGAGGGTTACGGTAGCAAGATCAGCAGCAC
704 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCAC
* ** * * * * * * * *
17808996 ACAGAGATGGAACCGGCCAATCCACGGCTTGCGCATCCCACCCCGCTGGCCGACTGAGCGCCCAC
769 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * *
17809061 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCTCAATCTAA
834 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
17809112 GCATTA-GGAGCTCATTCTC-GATCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTG
1 GCA-TACGGAGTTCATTCCCAG-TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
* **
17809175 GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTAATCGGGGCACCATGGCCAGTGCACCGTCGAA
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C-GT----CG--G-A
* * * * * *
17809240 GAACCTGACCAGCAGCATT-GGGTTCCGATGATCGGGGGTGCCGAAGGGGGGGTGTACGCCCATG
118 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC----GGGGGGTGTGCGCACATG
* *
17809304 ATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAA
179 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
17809369 CTCACACCTCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCT
244 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
17809434 -AGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATT
309 GA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * * *
17809498 GTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTTTACCAAGTATGGGGCCAAAAATCCTTCC
373 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* * ** **
17809563 GAAAAAATTTTAAAAAATCCCCAACCTTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACTTGT
438 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
17809628 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAA
503 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
17809693 ATGGCATTGGCATGCAGAAAATATGAAGATGTGTGCCTAAACCCACCTACCACCCTATCGATCCA
568 ATGGCATTGGCATGCAG-AAATATGAAGA--TGTGCCTAAACCCACCTACCACCCTATCGATCCA
* ** * *
17809758 CAGCTTAAGCATCCCGTCTCTCTGCCCGGCGTAGTGCCCGCCCGTCTGCTTGCTCGCTCGTTTCA
630 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC--C-GC---C-CGCTCGTTTCG
* ** * * * * *
17809823 TCGGTTGGCTTAGGCTTATAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGAGTTGTGGT
687 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGC
* * ** * * * * *
17809888 AGCAGGATCAGTAGCATACAGAAGGAGACCCGATCGATCCCCGACTTGTGCATCCCGCCCCTCTG
752 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * *
17809953 GCCGGCTGAGTGCCAGCACGCTTGTTTCGTGGGTTGACATAGGCATACGGAGTTTATTCCCAGTC
817 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
17810018 TAA
882 TAA
* * * ** * *
17810021 GCATACGAAGTTCCTTCCCAGTCTAAGATCGGACCAGACCGAGCATTTC-GCAGCACATGCAGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
17810085 CTTGGGCATGTGTTGGTGTCACTTTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGATCGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGC
** * *
17810150 GGCATTAAGGTTCCGACGATC-GGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTA
131 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
**
17810214 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATACCCTTAAAG
196 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
17810279 AGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATTGGGGACGCTTTT
261 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
17810344 TTTAAATGGTCAC
326 TTCAAATGGTCAC
17810357 GAACCAAAAA
Statistics
Matches: 11829, Mismatches: 1393, Indels: 816
0.84 0.10 0.06
Matches are distributed among these distances:
824 97 0.01
825 80 0.01
827 3 0.00
828 4 0.00
829 30 0.00
830 26 0.00
831 4 0.00
832 2 0.00
833 5 0.00
834 6 0.00
835 3 0.00
836 10 0.00
837 1 0.00
838 4 0.00
843 6 0.00
846 10 0.00
847 1 0.00
848 1 0.00
849 17 0.00
850 162 0.01
852 8 0.00
853 6 0.00
854 16 0.00
855 1 0.00
857 3 0.00
858 2 0.00
859 100 0.01
860 47 0.00
861 69 0.01
862 17 0.00
863 13 0.00
864 89 0.01
865 7 0.00
866 101 0.01
867 253 0.02
868 114 0.01
869 74 0.01
870 102 0.01
871 55 0.00
872 9 0.00
873 142 0.01
874 9 0.00
875 308 0.03
876 190 0.02
877 19 0.00
878 167 0.01
879 16 0.00
880 38 0.00
881 443 0.04
882 194 0.02
883 569 0.05
884 926 0.08
885 522 0.04
886 152 0.01
887 126 0.01
888 407 0.03
889 292 0.02
890 231 0.02
891 53 0.00
892 372 0.03
893 257 0.02
894 1223 0.10
895 981 0.08
896 163 0.01
897 143 0.01
898 452 0.04
899 106 0.01
900 606 0.05
901 362 0.03
902 243 0.02
903 8 0.00
904 91 0.01
905 4 0.00
906 80 0.01
908 166 0.01
909 208 0.02
910 1 0.00
911 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (884 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGC
GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAT
CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17798496 original size:26 final size:27
Alignment explanation
Indices: 17798460--17798513 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
17798450 GTTGACTTAG
*
17798460 GCATATGGAG-TTCATTCCTAGTCTAA
1 GCATACGGAGTTTCATTCCTAGTCTAA
17798486 GCATACGGAGTTTCATTCCTAGTCTAA
1 GCATACGGAGTTTCATTCCTAGTCTAA
17798513 G
1 G
17798514 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.33
Consensus pattern (27 bp):
GCATACGGAGTTTCATTCCTAGTCTAA
Found at i:17799385 original size:26 final size:26
Alignment explanation
Indices: 17799355--17799407 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17799345 GTTGACTTAG
*
17799355 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17799381 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17799407 G
1 G
17799408 ATCACATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17800288 original size:26 final size:26
Alignment explanation
Indices: 17800252--17800304 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17800242 GTTGACTTAG
* *
17800252 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
17800278 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
17800304 G
1 G
17800305 ATAGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:17802952 original size:26 final size:26
Alignment explanation
Indices: 17802923--17802975 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17802913 GTTAACATAG
17802923 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
* *
17802949 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
17802975 G
1 G
17802976 ATTGGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:17803848 original size:26 final size:26
Alignment explanation
Indices: 17803818--17803870 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17803808 GTTGACTTAG
17803818 GCATACGGA-GTTCATTCCCAGTCTAA
1 GCATAC-GATGTTCATTCCCAGTCTAA
17803844 GCATACGATGTTCATTCCCAGTCTAA
1 GCATACGATGTTCATTCCCAGTCTAA
17803870 G
1 G
17803871 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGATGTTCATTCCCAGTCTAA
Found at i:17806505 original size:26 final size:26
Alignment explanation
Indices: 17806475--17806527 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17806465 GTTGACTTAG
* *
17806475 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17806501 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17806527 G
1 G
17806528 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17808232 original size:26 final size:26
Alignment explanation
Indices: 17808203--17808255 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17808193 GTTGACGTAG
17808203 GCATACGGAGTT-TAGTCCCAGTCTAA
1 GCATACGGAGTTCT-GTCCCAGTCTAA
* *
17808229 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCTGTCCCAGTCTAA
17808255 G
1 G
17808256 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCTGTCCCAGTCTAA
Found at i:17810024 original size:26 final size:26
Alignment explanation
Indices: 17809995--17810047 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17809985 GTTGACATAG
* *
17809995 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
17810021 GCATACGAAGTTCCTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17810047 G
1 G
17810048 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17810795 original size:26 final size:26
Alignment explanation
Indices: 17810759--17810810 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17810749 TGACTTAGGC
* *
17810759 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCAAAGA
17810785 ATACAGAGTTCATTCCCAGTCAAAGA
1 ATACAGAGTTCATTCCCAGTCAAAGA
17810811 TCGGACCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCAAAGA
Found at i:17810918 original size:185 final size:185
Alignment explanation
Indices: 17810606--17811023 Score: 719
Period size: 185 Copynumber: 2.3 Consensus size: 185
17810596 AGGCATACGA
** * * * *
17810606 AGTTCATTCCTTGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACACAA
1 AGTTCATTCCCAGTCAAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACACAA
* * *
17810671 AAAGGGACCCGATCGATCACCGACTTGCGGATCACGCCCCTCTGGCCGGCTGAGCGCCCCCACAC
66 AAAGGGACCCAACCGATCACCGACTTACGGATCACGCCCCTCTGGCCGGCTGAGCGCCCCCACAC
17810736 TGGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATACAG
131 TGGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATACAG
*
17810791 AGTTCATTCCCAGTCAAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACACAG
1 AGTTCATTCCCAGTCAAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACACAA
* *
17810856 AAGGGGACCCAACCGATCACCGACTTACGGATCACGCCCCTCTGGCCGGCTGAGCGCCCCCACGC
66 AAAGGGACCCAACCGATCACCGACTTACGGATCACGCCCCTCTGGCCGGCTGAGCGCCCCCACAC
17810921 TGGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATACAG
131 TGGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATACAG
*
17810976 AGTTCATTCCCAGTCAAAGATCGGACCAGACCGAGGGTTGCAGCAGCA
1 AGTTCATTCCCAGTCAAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
17811024 CATGCTGGGC
Statistics
Matches: 220, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
185 220 1.00
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.19
Consensus pattern (185 bp):
AGTTCATTCCCAGTCAAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACACAA
AAAGGGACCCAACCGATCACCGACTTACGGATCACGCCCCTCTGGCCGGCTGAGCGCCCCCACAC
TGGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATACAG
Found at i:17810980 original size:26 final size:26
Alignment explanation
Indices: 17810944--17810995 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17810934 TGACTTAGGC
* *
17810944 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCAAAGA
17810970 ATACAGAGTTCATTCCCAGTCAAAGA
1 ATACAGAGTTCATTCCCAGTCAAAGA
17810996 TCGGACCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCAAAGA
Found at i:17816514 original size:26 final size:26
Alignment explanation
Indices: 17816483--17816535 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17816473 GTTGACTTAG
17816483 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17816509 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17816535 G
1 G
17816536 ATCGAATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17816896 original size:902 final size:897
Alignment explanation
Indices: 17815103--17817462 Score: 3135
Period size: 902 Copynumber: 2.6 Consensus size: 897
17815093 TTGTACACCA
* * *
17815103 AAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAA
1 AAAAAAATACAAGGATCA-ATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * *
17815168 AATC-CTGAACCGTAAAAAGTTTTGAAAATCATGGAAAATAGAAAAC-AGTCGTCTTGCCCTGAA
65 AATCTC-GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
17815231 ACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATG
129 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* *
17815296 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
194 CAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
17815361 CTCTCTGGCCGACGTAGAGCCCGCCCGTCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCAT
259 CTCTCTGGCCGACGTAGTGCCCGCACGCCCGCCCGCCCGCTAGTTTCATCGGTTGGCTTAGGCAT
* * ** *
17815426 ACCGAGTTCATTCTCAGTCTAAGATCGCATCGGA-CAAAGTATTGCGGTAGCAGGATCGGCAGCA
324 ACGGAGTTCATTCACAGTCTAAGATCAAATCGGATC-AAG-GTTGCGGTAGCAGGATC-GCAGCA
* * * * * * * *
17815490 CATAGAAGGGGACTCGTTCGATGCACGGCTTACGCCTTCCGCCCCTCTGGCAGGCTGAGCACCTG
386 CAAAG-A-GGGACCCGATCGATCCACGGCTTACGCATCCCGCCCCTCTGGCAGGCTGAGCGCCCG
* *
17815555 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAAGTCTAAGCATACGGAGTT
449 CACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCCAA-TCTAAGCATACGGAGTT
* * * * * *
17815619 CATTCCCAGTCGAAGATCGAA-CCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTTGACCATGT
513 CATTCCCAGTCTAAGATCGAATCGA-ACCAAGGGTTACGGCAGCACATGATAGGCTCGACCATGT
* * * * *
17815683 GCTGGTGTCGCATTTTTGTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCTGC
577 ACTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGAAAAACCTGACCTGC
* * * * *
17815748 AGCATTGGGGTTTCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATTACGATGGGTGCTGG
642 AGCATTGGGGTTCCAGCAATCGCGGGGGCCGGGGGGTGTGCACACATGATTACAATGGGTGCTGG
** *
17815813 TACTTGGCCCTTATATTTTCCCCCTATCCCTCATCAAACCTTGAGAACCCACACCCCCTTAAAGA
707 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACCCACACCCCCCTAAAGA
*
17815878 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
772 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTT
* *
17815943 TCAAATGGTGACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTTGTGCACGAC
837 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGATTTTTTTGTGCACGAC
* * ** *
17816004 AACAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAACACCTTTTTGAAAAAATTTTTA
1 AA-AAAAATACAAGGATCA-ATCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAA
** * *
17816069 AAAATCTCGAACCCCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTGTTGCCATGA
63 AAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
17816134 AACTTCACGTGAAGGCTTAAGGGACCATTGTATG-ATTTCACAAGCCATAAAAATGGCATTGGCA
128 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT-ACAAGCCATAAAAATGGCATTGGCA
* *
17816198 GGCAGAAATACGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCATCCC
192 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCATCCC
* * *
17816263 GTCTCTCTGGCCGATGTAGTGCCCGCTCGCCCGCCCGCCCGCTAGTTTCGTCGGTTGGCTTAGGC
257 GTCTCTCTGGCCGACGTAGTGCCCGCACGCCCGCCCGCCCGCTAGTTTCATCGGTTGGCTTAGGC
* * * * * *
17816328 ATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGATGGTTGTGGCAGTAGGATCGCAGCA
322 ATACGGAGTTCATTCACAGTCTAAGATCAAATCGGATC-AAGGTTGCGGTAGCAGGATCGCAGCA
* ** ** * *
17816393 TGCAAAGAGGGACCC-AGTCGA-CCCCAACTTATACATCCCGCCCCTCTGGCTGGCTAAGCGCCC
386 --CAAAGAGGGACCCGA-TCGATCCACGGCTTACGCATCCCGCCCCTCTGGCAGGCTGAGCGCCC
* *
17816456 ACGCGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTT
448 GCACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTT
* *
17816521 CATTCCCAGTCTAAGATCGAATCGAACCTAGGGTTACGGCAGCACATGATAGGCTCG-GCATGTA
513 CATTCCCAGTCTAAGATCGAATCGAACCAAGGGTTACGGCAGCACATGATAGGCTCGACCATGTA
* *
17816585 CTGGTG-CTGTATTTTTCTTCGTCGGGGCACCGTCATCGGAGCATCGCCGAAAAACCTGACC-GA
578 CTGGTGTC-GCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGAAAAACCTGACCTG-
* *
17816648 CGGCATTGGGGTTCC-GACAATC-CGGGGG-CGAGAGGGGTGTGCACACATGATGTGCAATGGGT
641 CAGCATTGGGGTTCCAG-CAATCGCGGGGGCCG-G-GGGGTGTGCACACATGAT-TACAATGGGT
* *
17816710 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACTCCCCCCT
702 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACCCACACCCCCCT
*
17816775 AAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACAC
767 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACAC
* *
17816840 TTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTTTTGCATG
832 -TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGATTTTTTTGTGCACG
*
17816904 CC
896 AC
*
17816906 AAAAAAATAAAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
1 AAAAAAATACAAGGATCAA-TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
*
17816971 AATCTCGAACCGTAAAAATTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
65 AATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
17817036 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
130 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * *
17817101 AAAAATATGAAGATGTGCCTAAACCCACCTACC-ACCTTATCGATCC-CGGCTTACGCATCCCAT
195 AGAAATATGAAGATGTGCCTAAACCCACCTACCAACC-TATCGATCCACGGCTTGCGCATCCCGT
* * * * * *
17817164 CTCTCTGGCCGGCCTAGT----GCACGCCTGCCCGCCCACTTGTTTCATCGATTGGCTTAGGCAT
259 CTCTCTGGCCGACGTAGTGCCCGCACGCCCGCCCGCCCGCTAGTTTCATCGGTTGGCTTAGGCAT
* * * *
17817225 ACGGAGTTCATTCACAGTCTAAGATCAAATCAGATCAAGGTTTGCGGTAGCAGGATAGGAAACAC
324 ACGGAGTTCATTCACAGTCTAAGATCAAATCGGATCAAGG-TTGCGGTAGCAGGAT-CGCAGCAC
* * * * * * * * * *
17817290 ACAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGACCGCTCGT
387 A-A-AGAGGGACCCGATCGATCCACGGCTTACGCATCCCGCCCCTCTGGCAGGCTGAGCGCCCGC
* * *
17817355 ACGCTCGTTTCA-TGTGTTGACTTAGGCATACGAAGATCATTCCCAGTCTAAGCATACGGAGTTC
450 ACGCTCGTTTCATTG-GTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTC
* * * * *
17817419 ATTCCCAGTCTTAGATTGGATCGGACCAAGGGTTACAGCAGCAC
514 ATTCCCAGTCTAAGATCGAATCGAACCAAGGGTTACGGCAGCAC
17817463 TTGCCCGGCT
Statistics
Matches: 1277, Mismatches: 154, Indels: 60
0.86 0.10 0.04
Matches are distributed among these distances:
894 5 0.00
895 83 0.06
896 18 0.01
897 126 0.10
899 35 0.03
900 184 0.14
901 137 0.11
902 320 0.25
903 126 0.10
904 236 0.18
905 7 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (897 bp):
AAAAAAATACAAGGATCAATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGACGTAGTGCCCGCACGCCCGCCCGCCCGCTAGTTTCATCGGTTGGCTTAGGCATAC
GGAGTTCATTCACAGTCTAAGATCAAATCGGATCAAGGTTGCGGTAGCAGGATCGCAGCACAAAG
AGGGACCCGATCGATCCACGGCTTACGCATCCCGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTC
GTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCGAATCGAACCAAGGGTTACGGCAGCACATGATAGGCTCGACCATGTACTGGTGTC
GCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGAAAAACCTGACCTGCAGCATTGGG
GTTCCAGCAATCGCGGGGGCCGGGGGGTGTGCACACATGATTACAATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACCCACACCCCCCTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGATTTTTTTGTGCACGAC
Found at i:17817409 original size:26 final size:26
Alignment explanation
Indices: 17817380--17817429 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17817370 GTTGACTTAG
17817380 GCATACGAAGATCATTCCCAGTCTAA
1 GCATACGAAGATCATTCCCAGTCTAA
* *
17817406 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGAAGATCATTCCCAGTCT
17817430 TAGATTGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACGAAGATCATTCCCAGTCTAA
Found at i:17817776 original size:26 final size:26
Alignment explanation
Indices: 17817739--17817791 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17817729 GTTGACTTAG
*
17817739 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17817765 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17817791 G
1 G
17817792 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17817779 original size:359 final size:359
Alignment explanation
Indices: 17817114--17817821 Score: 890
Period size: 359 Copynumber: 2.0 Consensus size: 359
17817104 AATATGAAGA
* * * *
17817114 TGTGCCTAAACCCACCTACCACCTTATCGATCCCGGCTTACGCATCCCATCTCTCTGGCCGGCCT
1 TGTGCCTAAACCCACCTACAACCTTATCGATCCCGACTTACGCATCCCATCTCTCTGGCCGACAT
* * *
17817179 AGTGCACGCCTGCCCGCCCACTTGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCACAGTC
66 AGTGCACGCCCGCCCGCCCACTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCACAGTC
* * **
17817244 TAAGATCAAATCAGATCAAGGTTTGCGGTAGCAGGATAGGAAACACACAGAGGGGGACCCGACCG
131 TAAGATCAAACCAGACCAAGGTTTGCGACAGCAGGATAGGAAACACACAGAGGGGGACCCGACCG
* * * * * * * *
17817309 ATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGACCGCTCGTACGCTCGTTTCATGTGTTG
196 ATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAACGCCCGCACGCTCATTTCATGGGTTG
* * **
17817374 ACTTAGGCATACGAAGATCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTTAGATTGGA
261 ACTTAGGCATACGAAGATCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
*
17817439 TCGGACCAAGGGTTACAGCAGCACTTGCCCGGCT
326 CCGGACCAAGGGTTACAGCAGCACTTGCCCGGCT
** * *
17817473 TGTGCCTAAACCCACCTA-AACCTTATCGATCCACGACTTGTGCATCCCGTCTCTCTGGCCGATA
1 TGTGCCTAAACCCACCTACAACCTTATCGATCC-CGACTTACGCATCCCATCTCTCTGGCCGACA
* * *
17817537 TAGTGC-CTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTTC-TA
65 TAGTGCAC-GCCCGCCCGCCCACTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCA-TTCACA
** * * * * *
17817600 GTCTAAGATCGGACC-GAACCGAGGGTTAT-C-ACAGTAGGAT-TGACAGCACACAGAGTGGGAC
128 GTCTAAGATCAAACCAG-ACC-AAGGTT-TGCGACAGCAGGATAGGA-AACACACAGAGGGGGAC
** * *
17817661 CCGATTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCATTTCG
189 CCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAACGCCCGCACGCTCATTTCA
* *
17817726 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
254 TGGGTTGACTTAGGCATACGAAGATCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
* *
17817791 GATCAGACCGGACCGAGGGTTACGGCAGCAC
319 GATCAGACCGGACCAAGGGTTACAGCAGCAC
17817822 ATGCTAGGCT
Statistics
Matches: 296, Mismatches: 46, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
358 17 0.06
359 269 0.91
360 9 0.03
361 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.24, T:0.24
Consensus pattern (359 bp):
TGTGCCTAAACCCACCTACAACCTTATCGATCCCGACTTACGCATCCCATCTCTCTGGCCGACAT
AGTGCACGCCCGCCCGCCCACTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCACAGTC
TAAGATCAAACCAGACCAAGGTTTGCGACAGCAGGATAGGAAACACACAGAGGGGGACCCGACCG
ATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAACGCCCGCACGCTCATTTCATGGGTTG
ACTTAGGCATACGAAGATCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
CCGGACCAAGGGTTACAGCAGCACTTGCCCGGCT
Found at i:17817886 original size:11 final size:11
Alignment explanation
Indices: 17817872--17817904 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
17817862 ATCGGGGCAC
17817872 CATCGCCAGAG
1 CATCGCCAGAG
17817883 CATCGCCAGAG
1 CATCGCCAGAG
17817894 CATCGCCAGAG
1 CATCGCCAGAG
17817905 AACCTGACCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.27, C:0.36, G:0.27, T:0.09
Consensus pattern (11 bp):
CATCGCCAGAG
Found at i:17819556 original size:26 final size:26
Alignment explanation
Indices: 17819517--17819569 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17819507 GCTGACTCTG
17819517 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
* * *
17819543 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
17819569 G
1 G
17819570 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:17820428 original size:26 final size:26
Alignment explanation
Indices: 17820399--17820448 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17820389 GCTCGTTCTG
17820399 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
* *
17820425 TACGGAGTTCATTTCTAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
17820449 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:17821327 original size:26 final size:26
Alignment explanation
Indices: 17821298--17821350 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17821288 GTTGACTTAG
* *
17821298 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17821324 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17821350 G
1 G
17821351 ACCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17822730 original size:905 final size:897
Alignment explanation
Indices: 17818636--17823099 Score: 6006
Period size: 903 Copynumber: 5.0 Consensus size: 897
17818626 TGGGTTGACT
* *
17818636 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCACATGCT
* * * * *
17818701 GGGCTCAGGCATGGGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGA
66 GGGCTCGGGCATGAGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGG
* * ** * **
17818766 AGAACCTAACCGGCCGCATTGGGGTTCCGACGATCGGGGGGGTTGGGGGTGATGTGTACACATGA
131 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GGTGTGCGCACATGA
*
17818831 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAAC
195 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
17818896 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCCG
260 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
17818961 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTT
325 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
17819026 TTTATGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTTCGAA
390 TTTATGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** * *
17819091 AAAATTTAAAAAAATCCCGAACCT-CAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTAG
455 AAAATTTTAAAAAATCCCGAA-CTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* **
17819155 TCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGTATAAAAAT
519 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
17819220 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTCGATCCACGGCT
584 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
17819285 TGCACATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTAGTTTCGTCGGT
649 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-CCCG-CCGCCCGCTCGTTTCGTCGGT
* * * * *
17819350 AGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGA-CTGGATCGAGGGTTACAGCAGTA
711 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGGCT-GAGGGTTACAGCAGCA
* * *
17819414 GGATCGACAGCACGCAGAGTAGGACCCGGTCGATCCCCAGCTTGCGCATCTTGCCCCTCTGGCCG
775 GGATCGACAGCACGCAGAGGAGGACCCGATCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCG
* * * *
17819479 GCTGAGCGCCCGCACGCTCGTTCCATGGGCTGACTCTGGCATACGAAATTCATTCCCAGTC
840 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT-TGGCATA-G-AATTCATTCCCAGTC
* * *
17819540 TAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGA-TCAGACCGAGGGTTGCAGTAGCACATGC
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCGAGGGTTGCGGCAGCACATGC
* ** *
17819604 TGGGCTCGGGCATGTA-CTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCC
65 TGGGCTCGGGCATG-AGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCC
** * **
17819668 AAAGAACCTGACCGACGGTGTTGGGGTTCCTG-CGATCGGGGGGGCC-GGGGGGTGTGCGCACAT
129 GGAGAACCTGACCGGCGGCATTGGGGTTCC-GACGATCGGGGGGGCCGGGGGGGTGTGCGCACAT
* * *
17819731 GATGTGCGATTGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
193 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
17819796 ACTCACACCCCCTTAAAGAGCCTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
258 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
17819861 TGAAACGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGTTGAAT
323 TGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
17819926 TTTTTTATGCATGCCAAAGAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAACACACCTTC
387 TTTTTTATGCATGCCAAA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * ***
17819991 CAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
451 CGAAAAAATTTTAAAAAATCCCGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
*
17820056 TCGTCTTGCCATGAAACTTAACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAA
516 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
17820120 AATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCAAG
581 AATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
17820185 GCTTGTGCATCCCATCTCTCTGGCCGGCGTAGTGCCCG----C-CCGCCCGCTCGTTTCGTCGAT
646 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCGCCGCCCGCTCGTTTCGTCGGT
* * ** *
17820245 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGATTGAGGATTACAGCAGCAG
711 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGGCTGAGGGTTACAGCAGCAG
* * ** * *
17820310 GATCGGCAGCATGCAGAGTG-GGACCCGATCGATCGTCGGCTTGCACATAC-CGCCCCTCTGGCC
776 GATCGACAGCACGCAGAG-GAGGACCCGATCGATCCCCAGCTTGCGCAT-CTCGCCCCTCTGGCC
* *
17820373 -AGCTGAGTGCCTGCACGCTCG-TTC-T--G-T-AC--GG---AG--TTCATTCCCAGTC
839 GA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTGGCATAGAATTCATTCCCAGTC
* * *
17820419 TAAGCATACGGAGTTCATTTCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCACATGCT
* * *
17820484 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGAGCACCATCGCCGGAGCATTGCCGG
66 GGGCTCGGGCATGAGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGG
* * * * *
17820549 AGAACCTGACCGGCCGCATTGGGGTTCC-AGTGATCGGGGTGG-CTGGGGGGTGTGCACACATGA
131 AGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGA
* *
17820612 TGTGCAATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
195 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
17820677 TCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTG
260 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
17820742 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTAGAATTTTTGGCTGAATTTT
325 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * * * *
17820807 TTTGTGCAAGCCAAAAAAAATACAAGGATCACATCTACAAAGTTTGGGACCAAAAATCCTTTCAA
390 TTTATGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
*
17820872 AAAAATTTTAAAAAATCCCGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCG
454 AAAAATTTTAAAAAATCCCGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
17820937 TCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
519 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
17821002 GGCATTGTCATGTAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCACGGCT
584 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
17821067 TGCGCATCCCGTCTCTCCGGCCGACGTAGTGCCTGCCTGCCCGTCCGCTCGCTCGTTTCATCGGT
649 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC--CCCG-CCGCCCGCTCGTTTCGTCGGT
* ** * * * *
17821132 TGGCTTAGGCATACGAAGTGAATTCCCAGTCTAAGATTGAACCGGACTGAGGGTTGCAGCAGCAA
711 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGGCTGAGGGTTACAGCAGCAG
* * * * **
17821197 GA-CTGACAGTACACAGAGGGGGACCCGA-CTGATCCCCAG-TTGCGCATCCCGCTTCTCTGGCC
776 GATC-GACAGCACGCAGAGGAGGACCCGATC-GATCCCCAGCTTGCGCATCTCGCCCCTCTGGCC
* * *
17821259 GACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTC
839 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT-GGCATA--GAATTCATTCCCAGTC
* * * * *
17821321 TAAGCATACAGAGTTCATTCCCAGTCTAAGACCAGACTGGACCAAGGATTGCGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCACATGCT
* * * *
17821386 GGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTGTCGG
66 GGGCTCGGGCATGAGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGG
* * *
17821451 AGAACCTGACCGACGGCATTGGGGTTCC-AGTGATCGAGGGGGCCGGGGGGGTGTGCGCACATGA
131 AGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGA
* * *
17821515 TGTGTGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
195 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
17821580 TCACTCCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
260 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
17821645 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
325 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * ** *
17821710 TTTGTGCATGCCAAAAAAAATACAAGGATCACTTTTACCAAGTTTAGGGCCAGAACTTTTTCTGA
390 TTTATGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* ** *
17821775 AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
454 AAAAATTTTAAAAAATCCCGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
17821840 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAAT
519 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* ** * * * *
17821905 GGCAGTGGCATGTAGAAATACAAAGATGTGCCTAAACCCACCTATCACTCTATCAATCAACGGCT
584 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
17821970 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCCGCACGCCCGCTCGTTTCGTCGGT
649 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--CCCCCGC-CGCCCGCTCGTTTCGTCGGT
* * *
17822035 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGGCTGAGGGTTGC-GATAGTA
711 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGGCTGAGGGTTACAG-CAGCA
* * * *
17822099 GGGTCGGCAGCACGTAGAGGAGGACCCGATCGATCCCC-GTCTTGCGCTTCTCGCCCCTCTGGCC
775 GGATCGACAGCACGCAGAGGAGGACCCGATCGATCCCCAG-CTTGCGCATCTCGCCCCTCTGGCC
* * * *
17822163 GACTAAGTGCCCGCACGCTCGTTTTGTGGGTTAACTTAGGCATATTGAATTCATTCCCAGTC
839 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT-GGCATA--GAATTCATTCCCAGTC
* * * * *
17822225 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGA-CGAAGGGTTGCGTCAACACATGT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCG-AGGGTTGCGGCAGCACATGC
* ** * * * **
17822289 TGGGTTCGGGCATGAGCTGGTGCTACTTTTTTCTTCATCGGGGCACCATCACCGGAGCATCATCG
65 TGGGCTCGGGCATGAGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCG
*
17822354 GAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGCGGGTGTGCGCACATG
130 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGGTGTGCGCACATG
* * *
17822419 ATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCTCCTATCCGTCATCAAACCTCGAGAA
194 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * * *
17822484 ATCACACCCCTTTAAAGAGCATTTGAAATTTTACAGGTTTGTTGCCAATAGCCATTAAAGTGTCT
259 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
17822549 GAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
324 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
17822614 TTTTATGCATGCGAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
389 TTTTATGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * * *
17822679 AAAAAATTTTAAAAAATCTCGGACTACAAAATGTTTCGAAAATGGTGAAAAATAGAAAACGAGTC
453 AAAAAATTTTAAAAAATCCCGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
17822744 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
518 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
17822809 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGC
583 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * ** * *
17822874 TTGCGCATCCCATCTCTCTGGTCGGCGTAGTGCCAGCCCGC-CCTTCTGCTCGTTTCGTCGATTG
648 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCGCCGCCCGCTCGTTTCGTCGGTTG
** * * *
17822938 GCTTAGGCATACGGAGTTCATTCCCCA-TCTAAGATCAGACCGGGCCGAGGGTTTCAGCAGCAAG
713 GCTTAGGCATACGGAGTTCATT-CCCAGTCTAAGATTGGACCGGGCTGAGGGTTACAGCAGCAGG
* ** **** * *
17823002 ATTGGTAGTTTACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC-CTGCCCCTC-GGCC-A
777 ATCGACAGCACGCAGAGGAGGACCCGATCGATCCCCAGCTTGCGCATCTC-GCCCCTCTGGCCGA
* * *
17823064 GCTGAGCGCCTGCACGCTCTTTTCGGGGGTTGACTT
841 -CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
17823100 AGGCTTACGG
Statistics
Matches: 3141, Mismatches: 355, Indels: 132
0.87 0.10 0.04
Matches are distributed among these distances:
878 189 0.06
879 439 0.14
882 1 0.00
883 1 0.00
885 2 0.00
886 39 0.01
887 103 0.03
888 1 0.00
889 2 0.00
890 2 0.00
891 2 0.00
892 2 0.00
893 1 0.00
894 2 0.00
895 142 0.05
896 4 0.00
897 1 0.00
898 1 0.00
899 1 0.00
900 34 0.01
901 111 0.04
902 325 0.10
903 767 0.24
904 506 0.16
905 463 0.15
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (897 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCACATGCT
GGGCTCGGGCATGAGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGG
AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
TTATGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
AAATTTTAAAAAATCCCGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCGCCGCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGGCTGAGGGTTACAGCAGCAGGATCG
ACAGCACGCAGAGGAGGACCCGATCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGACTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTGGCATAGAATTCATTCCCAGTC
Found at i:17824856 original size:26 final size:26
Alignment explanation
Indices: 17824820--17824870 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17824810 TGATGTAGGA
*
17824820 ATACGGAGTTCATTCCCATTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
17824846 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
17824871 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:17825747 original size:26 final size:26
Alignment explanation
Indices: 17825717--17825769 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17825707 GTTGACTTAG
*
17825717 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17825743 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17825769 G
1 G
17825770 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17827055 original size:432 final size:436
Alignment explanation
Indices: 17826227--17827068 Score: 1097
Period size: 432 Copynumber: 1.9 Consensus size: 436
17826217 GAAAATCTGG
* * *
17826227 TGAAAAATAGAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGTTAAGGGACCATGTATG
1 TGAAAAATAGAAAAACGAGTCATCTTGCCATAAAACTTCACATGAAAGTTAAGGGACCATGTATG
* * * *
17826292 AATTAACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
66 AATTAACAAGCCATAAAAATGGCATTGGCACGCAGAAAGATAAAGATGTGCCTAAACACACCTAC
* *
17826357 CACCCAATCGATCCACGGCTTGCGCATCCTCGTCTCTCTGGTCAGCGTAGTGCCCGCTCACCCGC
131 CACCCAATCGATCCACGGCTTGCGCATCCTCGTCTCTCTGGCCAGCGTAGCGCCCG--C-CCCGC
* * *
17826422 CAGCCAGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCG
193 CA-CCAGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
** * * * * * * * *
17826487 GATTGAGGGTTGCGGTAGCAAGATCGGCAGCATGTAGAGGGGGACCCGATCGATCGCCAGGTTGC
257 GACCGAAGGTTGCAGTAGCAAGATCGACAGCACGTAGAGGGGGACCCAACCGATCCCCAGCTTGC
* * ** * * ** *
17826552 GCATCCTGCCATTCTGGCCATTTGAGCGCCTGCACTCTCGTTTTGTGCGTTGACTTAGGCATACG
322 GCATCCCGCCACTCTGGCCAGCTGAGCGCCTGCACGCTAGTTTCATGCGTTGACTTAGGCATACA
17826617 GAGTTCATTCCCAGTCTAAGATCGGACCGAGCAAAAAGTTTTAAAATCAT
387 GAGTTCATTCCCAGTCTAAGATCGGACCGAGCAAAAAGTTTTAAAATCAT
* *
17826667 TGAAAAATA-TAAAACGAGTCATCTTGCCATAAAACTTCACATGAAGGCTTAAGGGACCATTGTA
1 TGAAAAATAGAAAAACGAGTCATCTTGCCATAAAACTTCACATGAAAG-TTAAGGGACCA-TGTA
* * *
17826731 TGAATTTACAAGCCATAAAAATGGCATTGGCACGGAGAGAGATAAAGATGTGCCTAAACACACCT
64 TGAATTAACAAGCCATAAAAATGGCATTGGCACGCAGAAAGATAAAGATGTGCCTAAACACACCT
*
17826796 ACCACCCTATCGATCCACGGCTTGCGCATCC-CGTCTCTCTGGCC-GACGTAGCGCCCG-CCCG-
129 ACCACCCAATCGATCCACGGCTTGCGCATCCTCGTCTCTCTGGCCAG-CGTAGCGCCCGCCCCGC
* *
17826857 C-TCA-CTCGTTTCGTCGGTTTGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
193 CACCAGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * *
17826920 ACCGAAGGTTGCAGTAGCAGGATCGACAGCACGTAGAGGGGGACTCAACCGATCCCC-GACTTGT
258 ACCGAAGGTTGCAGTAGCAAGATCGACAGCACGTAGAGGGGGACCCAACCGATCCCCAG-CTTGC
* * * * * * * * *
17826984 TCATCCCGCCCCTCTGGTCGGCTGAGTGTCTGTACGCTAGTTTCATGGGTTGACTTAGGCCTACA
322 GCATCCCGCCACTCTGGCCAGCTGAGCGCCTGCACGCTAGTTTCATGCGTTGACTTAGGCATACA
17827049 GAGTTCATTCCCAGTCTAAG
387 GAGTTCATTCCCAGTCTAAG
17827069 CATACGGAGT
Statistics
Matches: 347, Mismatches: 51, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
431 1 0.00
432 171 0.49
433 2 0.01
435 1 0.00
436 4 0.01
439 34 0.10
440 42 0.12
441 92 0.27
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (436 bp):
TGAAAAATAGAAAAACGAGTCATCTTGCCATAAAACTTCACATGAAAGTTAAGGGACCATGTATG
AATTAACAAGCCATAAAAATGGCATTGGCACGCAGAAAGATAAAGATGTGCCTAAACACACCTAC
CACCCAATCGATCCACGGCTTGCGCATCCTCGTCTCTCTGGCCAGCGTAGCGCCCGCCCCGCCAC
CAGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
GAAGGTTGCAGTAGCAAGATCGACAGCACGTAGAGGGGGACCCAACCGATCCCCAGCTTGCGCAT
CCCGCCACTCTGGCCAGCTGAGCGCCTGCACGCTAGTTTCATGCGTTGACTTAGGCATACAGAGT
TCATTCCCAGTCTAAGATCGGACCGAGCAAAAAGTTTTAAAATCAT
Found at i:17828351 original size:882 final size:866
Alignment explanation
Indices: 17827068--17829930 Score: 3422
Period size: 899 Copynumber: 3.2 Consensus size: 866
17827058 CCCAGTCTAA
* * * * *
17827068 GCATACGGAGTTCATTCCTTGTCTAAGATCGGACCAAATCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTGGCGGCAGCACATGCTGGG
* * * * * **
17827133 CTCAGGCATGTAGTGGTGCCGCATTTTT-TTCGTTGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTACTGGTGCC-TATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* ** * *
17827197 ACCTGACCGACGGTATTGGGTTTATGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTA
130 ACCTGACCGACGGTATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
17827261 CGATGGGTGCTGGTA-----C----TTGGCCCCTTATCCCTCATCAAACCTCAGGAACTCACACC
194 CGATGGGTGCTGGTACTGGCCTTATTTGGCCCCCTATCCCTCATCAAACCTCA-GAACTCACACC
* * * *
17827317 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTTGCCATTAAAGTGTTTGAAATGGG
258 TCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
17827382 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACGTT-GAGTTTTTAGCTGAATTTTTTTGTG
323 GACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTG
* ** *
17827446 CATGCCAAAAAAAAAACAAGGATCATGTCTACCAAGTTTGGGGCCAAGTGTCCTTCTGAAAAAAT
387 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAGTCCTTCCGAAAAAAT
* **
17827511 TTTAAAAAATCCCGAACCAAAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGC
452 TTTAAAAAATCCCGAACCGAAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGC
*
17827576 CATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
517 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
17827641 GGCATGCAGAAATATGAACATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCA
582 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCA
* *
17827706 TCCCGTCTCTCTGGCCGGCGTAGTAACCGCCCGCCCGTTAGCCAGCTCGTTTCATCGATTGGCTT
647 TCCCGTCTCTCTGGCCGGCGTAGT-ACCGCCCGCCCG--AACCAGCTCGTTTCGTCGATTGGCTT
* * * *
17827771 AGGCATACGAAGTTCATTCCCAATCTAAGATCAAACCGGGCCGAGGGTTGCAGCAGCAGGATCGG
709 AGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACAGCAGCAGGATCGG
*
17827836 CAGCACGTAGAGGGGGACCCGACCGATCGCCAGCTTGTGCATCCCGCCCTTCCAGCCAGTTGAGC
774 CAGCACGTAGAGGGGGACCCGACCGATC-CCAGCTTGCGCATCCCGCCCTTCC-GCC-GTTGAGC
* ** *
17827901 GCCTGCACGCTCGTTTCGTGCATTGACTTTG
836 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
17827932 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTGGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTGGCGGCAGCACATGCTGGG
* *
17827997 CTCGGGCATGTACTGGTGCCATATTTTTCTTCATCAGGTCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTACTGGTGCC-TATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
17828062 ACCTGACTGACGATATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGGTGTGTGCGCACATGATG
130 ACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGCC--GGGGGG-GTGTGCGCACATGATG
*
17828127 TGCGATGGGTGCTGGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCTAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACT-GG-CCTTAT-TTGGCCCCCTATCCCTCATCAAACCTC-AGAACTC
* *
17828192 ACACCTCATTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
253 ACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
17828257 ATGGGGATACGTTTTTCAAATGGTCAGAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
318 ATGGGGACACTTTTTTCAAATGGTCA-CAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTT
* * *
17828322 TTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTCGGGCCAAAACTCCTTCCAA
381 TTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAGTCCTTCCGA
* * * *
17828387 AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAGAATCGTGAAAAATAGAAAATGAGTCG
446 AAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCG
* * * *
17828452 TCTCGCCATGAAACGTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAAT
511 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
17828517 GGCATTGGCACACAAAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCT
576 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCT
* * * * *
17828582 TGTGCATCTCGTCTCTCTGACCGGCGTAGTGCCTGCCCGCCCG-CCCA--T--TTT-GTCGATTG
641 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTACC-GCCCGCCCGAACCAGCTCGTTTCGTCGATTG
* *
17828641 GCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACAACAGCAGGA
705 GCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACAGCAGCAGGA
* *
17828706 TCGGCAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTCGCCGGTT
770 TCGGCAGCACGTAGAGGGGGACCCGACCGATCC-CAGCTTGCGCATCCCGCCCTTC-CGCC-GTT
*
17828771 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
832 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
17828806 GCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGGATCGGACCGGAC
1 GCATACGGAGTTCATTCCTAGTCTAAG-AT-C--AG---A----C---C-A-GATC-GA---G--
* * * *
17828871 CGAGTGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCCGGTGTCTCATTTTTCTTCCTCGGGG
44 -G-GTG--GCGGCAGCACATGCTGGGCTCGGGCATGTACTGGTGCCT-ATTTTTCTTCATCGGGG
* * * *
17828936 CACCATCGTCGGAGCGTCGGCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGTGC
104 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGC
* * *
17829001 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTTCTTGGACCTTATGTTGGCCCCCTCT
169 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC-TGG-CCTTAT-TTGGCCCCCTAT
* *
17829066 CCCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGT
231 CCCTCATCAAACCTC-AGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
17829131 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACT
295 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
17829196 TCGAGTTTTTAGCTGAATTTTTTTATGCAAT-CCAACAAAAATACAAAGATCATGTCTACCAAAT
360 TCGAGTTTTTAGCTGAATTTTTTTGTGC-ATGCCAAAAAAAATACAAGGATCATGTCTACCAAGT
* * *
17829260 TTGGTGTG-CAAACG-CCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAA
424 TTGG-G-GCCAAAAGTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTTGAAAA
*
17829323 TCATGAAAAATAGAAAATGAGCCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
487 TCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
17829388 TATGAATTTACAAGCCATAAAAATGGCATTGACACGTAGAAATATGAAGATGTGCCTAAACCCAC
552 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * * * *
17829453 CTACCACCCAATCGGTCCATGACTTGCGCATCCCGTCTCTCTGGCCAGTGTAGTGCCCGCCCGGC
617 CTACCACCCAATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-ACCGCCCGCC
* * *
17829518 C-AACC-GCTCG-TTCTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
681 CGAACCAGCTCGTTTC-GTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGAC
* * * * * * * * *
17829580 CGGACTGTGGGTTACGGTAGCAGGATCAGCAGCACGCAGAGGAGGACCCGATCGATCCCCGACTT
745 CGGACCGAGGGTTACAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCAG-CTT
* * * * * *
17829645 ACGTATCCTGCCCTTCTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
809 GCGCATCCCGCCCTTC-CGCCG-TTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
17829705 GCATACGGGGTTCATTTCTAGTTTCAGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCGGAC
1 GCATACGGAGTTCATTCCTAG--T---C-TA---AG---A-T--CAGAC-CAGATC-GA--GG--
* * * * ** *
17829770 CATGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTAGTGTCGC-ATTTTTCTTCCCCTGG
45 -GT-GG---CGGCAGCACATGCTGGGCTCGGGCATGTACTGGTG-C-CTATTTTTCTTCATCGGG
*
17829834 GCACCATCGCCGGAGCATCGGT-GGAGAACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGG
103 GCACCATCGTCGGAGCATC-GTCGGAGAACCTGACCGACGGTATTGGGGTTCCGACGATC-GGGG
17829898 GGCC-GGGGGGTGTGCGCACATGATGTGCGATGG
166 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
17829931 ATAAAAATGG
Statistics
Matches: 1721, Mismatches: 190, Indels: 141
0.84 0.09 0.07
Matches are distributed among these distances:
864 90 0.05
865 56 0.03
867 5 0.00
868 32 0.02
873 1 0.00
874 178 0.10
875 7 0.00
876 1 0.00
877 1 0.00
878 2 0.00
879 3 0.00
880 116 0.07
881 33 0.02
882 275 0.16
885 1 0.00
888 1 0.00
889 1 0.00
890 4 0.00
891 2 0.00
894 1 0.00
895 261 0.15
896 42 0.02
897 162 0.09
898 16 0.01
899 299 0.17
900 117 0.07
901 2 0.00
903 1 0.00
904 1 0.00
905 2 0.00
908 2 0.00
910 4 0.00
911 1 0.00
912 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (866 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTGGCGGCAGCACATGCTGGG
CTCGGGCATGTACTGGTGCCTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
CCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTGGCCTTATTTGGCCCCCTATCCCTCATCAAACCTCAGAACTCACACCTCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAGTCCTTCCGAAAAAATTTTA
AAAAATCCCGAACCGAAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTACCGCCCGCCCGAACCAGCTCGTTTCGTCGATTGGCTTAGGCATA
CGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACAGCAGCAGGATCGGCAGCACG
TAGAGGGGGACCCGACCGATCCCAGCTTGCGCATCCCGCCCTTCCGCCGTTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAG
Found at i:17828836 original size:26 final size:26
Alignment explanation
Indices: 17828806--17828856 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17828796 GTTGACTTAG
*
17828806 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17828832 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
17828857 GGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17829492 original size:895 final size:890
Alignment explanation
Indices: 17826649--17829930 Score: 4125
Period size: 882 Copynumber: 3.7 Consensus size: 890
17826639 CGGACCGAGC
* * * *
17826649 AAAAAGTTTT-AAAATCATTGAAAAATATAAAACGAGTCATCTTGCCATAAAACTTCACATGAAG
1 AAAAAGTTTTGAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * * *
17826713 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGAGAGAGATAAAG
65 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * *
17826778 ATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
130 ATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * * * * * *
17826843 GTAGCGCCCGCCCGCTCACTCGTTTCGTCGGTTTGCTTAGGCATACGGAGTTCATTCCCAGTCTA
195 GTAGTGCCCGCCCGCCCGCCCATTTTGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTA
* * * * * *
17826908 AGATCAGACCGGACCGAAGGTTGCAGTAGCAGGATCGACAGCACGTAGAGGGGGACTCAACCGAT
260 AGATCAGACCGGACCGAGGGTTACAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGAT
** * * * * * * *
17826973 CCCCGACTTGTTCATCCCGCCCCTCTGGTCGGCTGAGTGTCTGTACGCTAGTTTCATGGGTTGAC
325 CCCCGACTTGCGCATCCCGCCCCTCTCGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
* **
17827038 TTAGGCCTACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTTGTCTAAGATCGGACC
390 TTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
** * * * *
17827103 AAATCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTAG-TGGTGCCGCATTTTT-TTCGT
455 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT-GCTGGTGCCGCATTTTTCTTCCT
* * * * ** *
17827166 TGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGTATTGGGTTTATGGCGATCGG
519 CGGGGCACCATCGCCGGAGCATCGGCGGAGAACCTGACCGACGGTATTGGGGTTCCGACGATCGG
* * *
17827231 GGGGGCCGGGGGGTGTGCGCACATGATGTACGAT-GG-G-TG-C-TGG---TA-CTTGGCCCCTT
584 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGTCTTGGCCTTATATTGGCCCCCT
* * *
17827287 ATCCCTCATCAAACCTCAGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
649 ATCCCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
17827352 GCCAGTTGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
714 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
17827417 CGTT-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAAACAAGGATCATGTCTACCAA
779 C-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAA
** * *
17827481 GTTTGGGGCCAAGTGTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCAA
843 GTTTGGGG-CAAACG-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGA
* *
17827531 AAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAAG
1 AAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
17827596 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAACA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
17827661 TGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
131 TGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
** * * *
17827726 TAGTAACCGCCCGCCCGTTAGCCAGCTCGTTTCATCGATTGGCTTAGGCATACGAAGTTCATTCC
196 TAGTGCCCGCCCGCCCG---CCCA--T--TTT-GTCGATTGGCTTAGGCATACGGAGTTCATTCC
* * *
17827791 CAATCTAAGATCAAACCGGGCCGAGGGTTGCAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCC
253 CAATCTAAGATCAGACCGGACCGAGGGTTACAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCC
* * * * * * *
17827856 GACCGATCGCC-AGCTTGTGCATCCCGCCCTTC-CAGCCAGTTGAGCGCCTGCACGCTCGTTTCG
318 GACCGATCCCCGA-CTTGCGCATCCCGCCCCTCTC-GCCGGCTGAGCGCCCGCACGCTCGTTTCA
** * *
17827919 TGCATTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A----C---C--A
381 TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * **
17827968 GATC-GA--GG---G-TGG-T--GGCAGCACATGCTGGGCTCGGGCATGTACTGGTGCCATATTT
446 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * * * *
17828023 TTCTTCATCAGGTCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGACGATATTGGGGTTCCG
511 TTCTTCCTCGGGGCACCATCGCCGGAGCATCGGCGGAGAACCTGACCGACGGTATTGGGGTTCCG
*
17828088 ACGATC-GGGGGGCCGAGGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTCGGCCC
576 ACGATCGGGGGGGCC---GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCT-GT-CTTGG-CC
* * * *
17828152 TTATATTGGCCCCCTATCCCTCATCTAACCTCGAGAACTCACACCTCATTAATGAGCATTTGAGA
634 TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGAGCATTTGAGA
* *
17828217 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACGTTTTTCAAATGGTC
699 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
17828282 AGAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAAAAAAAATACAA
764 A-CAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAATACAA
* * * *
17828347 GGATCATGTCTACCAAGTTTCGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCG
827 GGATCATGTCTACCAAGTTT-GGGGC-AAACGCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
*
17828412 C
890 A
* * * * * *
17828413 AAAAAGTTTTGAGAATCGTGAAAAATAGAAAATGAGTCGTCTCGCCATGAAACGTCACGCGAAGG
1 AAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
17828478 CTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCACACAAAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* * * * *
17828543 TGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCTCGTCTCTCTGACCGGCG
131 TGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
*
17828608 TAGTGCCTGCCCGCCCGCCCATTTTGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAA
196 TAGTGCCCGCCCGCCCGCCCATTTTGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAA
* *
17828673 GATCAGACCAGACCGAGGGTTACAACAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATC
261 GATCAGACCGGACCGAGGGTTACAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATC
* * *
17828738 CTCGGCTTGCGCATCCCGCCCCTCTCGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
326 CCCGACTTGCGCATCCCGCCCCTCTCGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* *
17828803 TAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGGATCGGACCG
391 TAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * *
17828868 GACCGAGTGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCCGGTGTCTCATTTTTCTTCCTCG
456 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCG
* * *
17828933 GGGCACCATCGTCGGAGCGTCGGCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGG
521 GGGCACCATCGCCGGAGCATCGGCGGAGAACCTGACCGACGGTATTGGGGTTCCGACGATCGGGG
* *
17828997 GTGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTTCTTGGACCTTATGTTGGCCCC
586 GGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT-G-TCTTGG-CCTTATATTGGCCCC
* *
17829062 CTCTCCCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGGGCATTTGAGATTTTACAGGTTTG
647 CTATCCCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
17829127 CTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTA
712 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
17829192 CACTTCGAGTTTTTAGCTGAATTTTTTTATGCAAT-CCAACAAAAATACAAAGATCATGTCTACC
777 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGC-ATGCCAAAAAAAATACAAGGATCATGTCTACC
* * *
17829256 AAATTTGGTGTGCAAACGCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGT
841 AAGTTTGG-G-GCAAACGCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGA
* *
17829308 AAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGCCGTCTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
17829373 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACACGTAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* * * * *
17829438 TGTGCCTAAACCCACCTACCACCCAATCGGTCCATGACTTGCGCATCCCGTCTCTCTGGCCAGTG
131 TGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * * *
17829503 TAGTGCCCGCCCGGCCAACCGCTCGTTCTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
196 TAGTGCCCGCCC-G-C--CCGCCCATTTTGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAAT
* * * * * * * * *
17829568 CTAAGATCAGATCGGACTGTGGGTTACGGTAGCAGGATCAGCAGCACGCAGAGGAGGACCCGATC
257 CTAAGATCAGACCGGACCGAGGGTTACAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACC
* * * * * * * *
17829633 GATCCCCGACTTACGTATCCTGCCCTTCTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTT
322 GATCCCCGACTTGCGCATCCCGCCCCTCTCGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* * * * * * * *
17829698 GACTTAGGCATACGGGGTTCATTTCTAGTTTCAGCATACGGAGTTCATTCCCAGTCAAAGATCAG
387 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * *
17829763 ACCGGACC-ATGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTAGTGTCGCATTTTTCTT
452 ACCGGACCGA-GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * *
17829827 CCCCTGGGCACCATCGCCGGAGCATCGGTGGAGAACCTGACCGACGGTATTGGGGTTCCGACGAT
516 CCTCGGGGCACCATCGCCGGAGCATCGGCGGAGAACCTGACCGACGGTATTGGGGTTCCGACGAT
17829892 CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
581 CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
17829931 ATAAAAATGG
Statistics
Matches: 2074, Mismatches: 254, Indels: 127
0.84 0.10 0.05
Matches are distributed among these distances:
864 46 0.02
865 56 0.03
866 1 0.00
867 7 0.00
868 22 0.01
869 2 0.00
870 1 0.00
871 1 0.00
872 1 0.00
873 2 0.00
874 183 0.09
875 8 0.00
876 2 0.00
877 1 0.00
878 2 0.00
879 5 0.00
880 116 0.06
881 30 0.01
882 453 0.22
883 13 0.01
885 2 0.00
886 2 0.00
887 1 0.00
888 2 0.00
889 5 0.00
890 172 0.08
891 2 0.00
893 2 0.00
894 2 0.00
895 262 0.13
896 36 0.02
897 159 0.08
898 9 0.00
899 352 0.17
900 114 0.05
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (890 bp):
AAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
TAGTGCCCGCCCGCCCGCCCATTTTGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAA
GATCAGACCGGACCGAGGGTTACAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATC
CCCGACTTGCGCATCCCGCCCCTCTCGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
TAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCG
GGGCACCATCGCCGGAGCATCGGCGGAGAACCTGACCGACGGTATTGGGGTTCCGACGATCGGGG
GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGTCTTGGCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTT
TGGGGCAAACGCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGA
Found at i:17832932 original size:26 final size:26
Alignment explanation
Indices: 17832896--17832948 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17832886 GTTGACTTAG
17832896 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17832922 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17832948 G
1 G
17832949 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17833071 original size:901 final size:905
Alignment explanation
Indices: 17831242--17833078 Score: 2639
Period size: 901 Copynumber: 2.0 Consensus size: 905
17831232 AGCATTACCA
* * * * *
17831242 AAGAACCTGACCGGCGGTATTTGGGTTCCGGCGATCGAGGGAGCCGAGGGGGCTGTGCACACATG
1 AAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGAGGGAGCCGAGGGGGCTGTGCACACATG
*
17831307 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAA
66 ATGTGCGATGGGTGCTGGTACTGGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAA
*
17831372 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCGAGTAGCCATTAAAGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
17831437 GAAATGGGGACAGTTTTTTCAAATTGTCCCAAAATCTAGTACACTTCGAGTTTTTAGCTGAATTT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTAGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
17831502 TTTTGTGCGCACCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCA
261 TTTTGTGCACACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCA
* * **
17831567 AAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
326 AAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
17831632 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAA
391 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* **
17831697 TGGCATTGCCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCCGTGGC
456 TGGCATTGCCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
17831762 TTGAGCATCCCGTCTCTTTGGTCGGCGTAGTGCCCGCCCACCCGTCCGCCTGCTCGTTTCATCGG
521 TTGAGCATCCCGTCTCTCTGGTCGACATAGTGCCCGCCCACCCGCCCGCCTGCTCGTTTCATCGA
* *
17831827 TTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGATAGAGGGTTGCGGCAGCA
586 TTGGCTTAGGCATACAGAGTTCATTCCCAATCCAAGATCAGACCGGATAGAGGGTTGCGGCAGCA
* * * * *
17831892 GGATCGACATCACACAAAGGGGGACCCAACCGATCCCCGACTTGCGCTTCTCGCCCCTTTGCCCG
651 GGATCGACAGCACACAAAGGGGGACCCAACCGATCCCCGACTTGCGCATCCCACCCCTCTGCCCG
* * * *
17831957 GCTGATCGCCCGTACGCTCTTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCCAAG
716 GCTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCCAAG
* * * *
17832022 CATACCGAGTTCATTCTCAGTCTAACATCAGAACGAACCGAGGGTTGTGGCAGCATATGCTGGGC
781 CATACCGAGTTCATTCCCAGTCTAACATCAGAACGAACAGAGGGTTGCGGCAGCACATGCTGGGC
* ** *
17832087 TTGGACATATGCTGGCACCACATTTTTCTTCGTCGAGGCACCATCGCCGAACCATCGTCG
846 TCGGACATATGCTGGCACCACATTTTTCTTCACCGAGGCACCATCGCCGAACCATCGCCG
* * * *
17832147 AAGAACCTGACCGACGACATTGGGGTTTCGACGATCGGGGGGGCCG-GGGGGGTGTGCACACATG
1 AAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGAGGGAGCCGAGGGGGCTGTGCACACATG
*
17832211 ATGTGCGGTGGGTG-TGGTACTGGGCCCTTATATTGGCC-CCTTATCCCTCATCAAACCTCGAGA
66 ATGTGCGATGGGTGCTGGTACTGGGCCCTTATATTGGCCTCC-TATCCCTCATCAAACCTCGAGA
17832274 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
130 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
17832339 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
195 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTAGTACACTTCGAGTTTTTAGCTGAATT
* ** * *
17832404 TTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAACTCCTTCC
260 TTTTTGTGCACACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
* * * *
17832469 GAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCGTGAAAAA-A-AAAATGAGT
325 AAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
17832532 CGTCTTGCCATGAAGA-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
390 CGTCTTGCCATGAA-ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * * *
17832596 AATGGTATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACG
454 AATGGCATTGCCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * **
17832661 GCTTGCGCATCCCGTCTCTCTGGTCGACATAGTGCCCGCCCGCCCGCCCGTCTGTTCGTTTTGTC
519 GCTTGAGCATCCCGTCTCTCTGGTCGACATAGTGCCCGCCCACCCGCCCGCCTGCTCGTTTCATC
* * * * * **
17832726 GATTGGCTTAGGCATACGGAGTTCATTCCTAGTCCAAGATCAGACCGGATCGGGGGTTGCTTCAG
584 GATTGGCTTAGGCATACAGAGTTCATTCCCAATCCAAGATCAGACCGGATAGAGGGTTGCGGCAG
* * * * ** *
17832791 CAGGATCGGCAGCACGCAGAGGGGGACCCAACCGATCCCCGGCTTGTTCATCCCACCCCTCTGGC
649 CAGGATCGACAGCACACAAAGGGGGACCCAACCGATCCCCGACTTGCGCATCCCACCCCTCTGCC
* *
17832856 CGGTTGAGCGCCCGCACGCT-TGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCT
714 CGGCTGAGCGCCCGCACGCTCT-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCC
* * * *
17832920 AAGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACTGGAA-AGAGGGTTGCGGTAGCACATGC
778 AAGCATACCGAGTTCATTCCCAGTCTAACATCAGAAC--GAACAGAGGGTTGCGGCAGCACATGC
* * ** * * * * *
17832983 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCG
841 TGGGCTCGGACATATGCTGGCACCACATTTTTCTTCACCGAGGCACCATCGCCGAACCATCGCCG
**
17833048 TTGAACCTGACCGACGGCATTGGGGTTTCGA
1 AAGAACCTGACCGACGGCATTGGGGTTTCGA
17833079 AAAATTTTAA
Statistics
Matches: 823, Mismatches: 104, Indels: 14
0.87 0.11 0.01
Matches are distributed among these distances:
900 4 0.00
901 472 0.57
902 7 0.01
903 272 0.33
904 30 0.04
905 38 0.05
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (905 bp):
AAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGAGGGAGCCGAGGGGGCTGTGCACACATG
ATGTGCGATGGGTGCTGGTACTGGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTAGTACACTTCGAGTTTTTAGCTGAATTT
TTTTGTGCACACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCA
AAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGCCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGAGCATCCCGTCTCTCTGGTCGACATAGTGCCCGCCCACCCGCCCGCCTGCTCGTTTCATCGA
TTGGCTTAGGCATACAGAGTTCATTCCCAATCCAAGATCAGACCGGATAGAGGGTTGCGGCAGCA
GGATCGACAGCACACAAAGGGGGACCCAACCGATCCCCGACTTGCGCATCCCACCCCTCTGCCCG
GCTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCCAAG
CATACCGAGTTCATTCCCAGTCTAACATCAGAACGAACAGAGGGTTGCGGCAGCACATGCTGGGC
TCGGACATATGCTGGCACCACATTTTTCTTCACCGAGGCACCATCGCCGAACCATCGCCG
Found at i:17835549 original size:894 final size:900
Alignment explanation
Indices: 17834284--17835993 Score: 2555
Period size: 893 Copynumber: 1.9 Consensus size: 900
17834274 GCTGGCCTCA
*
17834284 GGCATGTGCTGCTATCGCATTTTTCTTCATCGGGGCACCATCGCTGAAGCATCGTCGGAGAACCT
1 GGCATGTGCTGCTATCGCATTTTTCTTCATCGGGGCACCATCGCTGAAGCATCATCGGAGAACCT
* *
17834349 GACCGACAGTATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATG
66 GACCGACAGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCACACATGATGTGCGATG
*
17834414 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCC
131 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
17834479 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTATAAAATGGGGA
196 CTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATAAAATGGGGA
* * * *
17834544 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCGAATTTTTTTTTGCAT
261 CACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAACCGAATGTTTTTGTGCAT
* *
17834609 GCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCCCAAAAAAATTT
326 GCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGACCAAAAATCCTT-CCAAAAAAATTT
*
17834674 AAAAAAATCCCGAACCGCAAAAGGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCA
390 AAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCA
*
17834739 TGAAACTTCACGTGA-AGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTG
455 TGAAACTTCACGTGACA-GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
17834803 GCACATAGAAATATGAAGATGTGCCTAGACCCACCAACCACCCTATCGATCCACGGCTTGCGCAT
519 GCACAGAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCACAT
* * *
17834868 CCCATCTCTTTGGCCGGCGTAGTG-CCCGCCCG-CCA-G-CTC-T-TTTCGTCGGTTGGCTTAGG
584 CCCATCTCTCTGGCCGGCGTAGTGCCCCGCCCGCCCACGCCGCTTGTTTCGTCAGTTGGCTTAGG
* ** * *
17834927 CATACGGAGTTCATTCCCAGTCTAATATCAGACCAGACTGAGGGTTACGACAGTAGGATCGACAG
649 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCAAGATCGACAG
* ** * * *
17834992 CATACAGA-TGAGGACCCGACCGATCCCCGGGTTGGGCATCCTGCCCCTCTGGCAGATTGAGCGC
714 CATACAGAGTG-GGACCCAACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCAGATTGAGCAC
*
17835056 CCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCAAATGGAGT
778 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCAAATGGAGT
17835121 TCATTCTCGATCTAAGATTGGATCGGATCGAGGGTTGCGGTAGTACATGTTAGGCTCG
843 TCATTCTCGATCTAAGATTGGATCGGATCGAGGGTTGCGGTAGTACATGTTAGGCTCG
* * ** * *
17835179 GGCATGTGCTGGTGTCGCATTTTTCTTTGTCGGGGCGCCATCG-TCGGAGCATCATCGGAGAACC
1 GGCATGTGCTGCTATCGCATTTTTCTTCATCGGGGCACCATCGCT-GAAGCATCATCGGAGAACC
* * **
17835243 TGACC-AGCGGCATTGGGGTTTCGGTGATC-GGGGGGCCAGGGGGGTGTGCACACATGATGTGCG
65 TGACCGA-CAGCATTGGGGTTCCGACGATCGGGGGGGCCA-GGGGGTGTGCACACATGATGTGCG
17835306 AT-GGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACAA
128 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-A
* *
17835369 CCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
192 CCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATAAAATG
*
17835434 GGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAACTGAATGTTTTTGT
257 GGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAACCGAATGTTTTTGT
* ***
17835499 GCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAAATCCTTTTGAAAAAA
322 GCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGACCAAAAATCCTTCCAAAAAAA
* * * * *
17835564 TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTG
387 TTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
17835629 CCATGAAACTTCACGTGACAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
452 CCATGAAACTTCACGTGACAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * *
17835694 TGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCAC
517 TGGCACAGAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCAC
* * *
17835759 ATCCCGTCTCTCTGGCTGGCGTAGTGCCCACCCGCCCGCCCACTCGCCCGCTTGTTTGGTCAGTT
582 ATCCCATCTCTCTGGCCGGCGTAGTG--C-CCCGCCCGCCCA--CG-CCGCTTGTTTCGTCAGTT
* * *
17835824 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAAG
641 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCAAG
* * * * * *
17835889 ATCGATAGCATGCAGAGTGGGACCTAATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGT
706 ATCGACAGCATACAGAGTGGGACCCAACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCAGAT
* * *
17835954 TGAGCACCCGCATGGTCGTTTCGTGGGTTGACTTGGGCAT
771 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
17835994 GTTGGTGCCA
Statistics
Matches: 724, Mismatches: 73, Indels: 26
0.88 0.09 0.03
Matches are distributed among these distances:
893 241 0.33
894 212 0.29
895 102 0.14
897 8 0.01
898 3 0.00
901 1 0.00
903 2 0.00
904 1 0.00
905 152 0.21
906 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
GGCATGTGCTGCTATCGCATTTTTCTTCATCGGGGCACCATCGCTGAAGCATCATCGGAGAACCT
GACCGACAGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCACACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATAAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAACCGAATGTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGACCAAAAATCCTTCCAAAAAAATTTA
AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGACAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACAGAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCACATCC
CATCTCTCTGGCCGGCGTAGTGCCCCGCCCGCCCACGCCGCTTGTTTCGTCAGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCAAGATCGACAGCA
TACAGAGTGGGACCCAACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCAGATTGAGCACCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCAAATGGAGTTCA
TTCTCGATCTAAGATTGGATCGGATCGAGGGTTGCGGTAGTACATGTTAGGCTCG
Found at i:17836828 original size:26 final size:25
Alignment explanation
Indices: 17836790--17836841 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
17836780 GTTGACTTAG
17836790 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
*
17836815 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
17836841 G
1 G
17836842 ATCGAATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:17838036 original size:872 final size:864
Alignment explanation
Indices: 17836036--17838573 Score: 3405
Period size: 889 Copynumber: 2.9 Consensus size: 864
17836026 ATCGCCGGAG
* *** * *
17836036 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTTAGCGATCGGGGGACCGGGGGGGGGTGTG
1 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGCC-GGGGGGGGTGTG
*
17836101 CGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAAC
65 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
17836165 CTCTAGAACTCACACCCCCTTAAAGATCATTTGAGATTTTACAGGTATGCTGCCAGTAGCCATTA
130 CTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
17836230 AAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGATTTTAG
195 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * **
17836295 CTGAATTTTTTATGCATGCCAACAAAAATAGAAGGATCACGTCTACCTTGTTTGGGGCCAAAACT
260 CTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
*
17836360 CCTTCCGAAAAAATTTTAAAAAAT-CAAAACCACAAAAAGTTTCAAAAATTGTGAAAAATAGAAA
325 CCTTCCGAAAAAATTTTAAAAAATCCAAAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAA
* * *
17836424 AGGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTCACGGACCATTGTATGAATTTACAAGCC
390 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
17836489 ATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCCAAACCACCTACACCCTATCGATCC
455 ATAAAAATGGTATTGGCACATAGAAATATGAAGATGTGCCTAAACCACCTACACCCTATCGATCC
* * * * *
17836554 ACGGCTTACGCATCCCGTCTCTTTGGTCGGCGTGGCGCCCGTCCGCCCGTCTGCCCGCTCATTTT
520 ACGGCTTGCGCATCCCGTCTCTTTGG-CGGCGTAGTG-CC-TCCG-CC--C-GCCC-CTCGTTTC
* *
17836619 GTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTGCGGC
577 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGTTGCGGC
** * * * * *
17836684 AATAGGATCGACCGCACGTAGAGGGGGACCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGG
642 AGCAGGATCGACAGCACGCAGAGGGGGACCCGCCGATCCCCGACTTGCGCATCC-GCCCCTCTGG
* *
17836749 TCGGTTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCT
706 TCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
17836813 AAGCATACGGAGTTCATTTCCAGTCTAAGATCGAATCGAACTGAAGGTTGCGGCAGCACATGCTG
771 AAGCATAC-GAG-T-A--TCCAG----AGATC--A-C-AAC--AAGGTTACGACAGCACATGCTA
* **
17836878 GGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCAGGGCAC
821 GGCTCGAGCATGTGCTGGTGCCATATTTTTCTTCACCAGGGCAC
* *
17836922 CATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGTGATCGGGGTGGCCAGGGGGGGTGTG
1 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGG-GGCCGGGGGGGGTGTG
* * * *
17836987 CACTCATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAAC
65 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * *
17837052 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTACTAGTAGCCATTA
130 CTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * *
17837117 AAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAG
195 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
17837182 CTAAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGAGCCAAAAC
260 CTGAAT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* *
17837247 TCTTTCCGAAAAAATTTTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAA
324 TCCTTCCGAAAAAATTTTAAAAAATCCAAAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAA
* * *
17837312 AACGAGTCGTCTTGCCGTGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGC
389 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
17837377 CATAAAAATGGTATTGGCACACAGAAATATGAAGATGTGCCTAAATACACCTACTACCCTATCGA
454 CATAAAAATGGTATTGGCACATAGAAATATGAAGATGTGCCTAAA-CCACCTAC-ACCCTATCGA
* * *
17837442 TCCACGGCTTGCGCATCCCGTCTCTCTGGCAGACGTAGTGCCAACCCGCCCGCCCACTCGTTTCG
517 TCCACGGCTTGCGCATCCCGTCTCTTTGGC-GGCGTAGTGCC--TCCGCCCGCCC-CTCGTTTCG
* * * *
17837507 TCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGAT-TGAACCAGACTGAGTGTTGCGG
578 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACTGAG-GTTGCGG
** * *
17837571 CAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGCCGATCCCCGACTTGAGCATCTCACCCCTCT
641 CAGCAGGATCGACAGCACGCAGAGGGGGACCC-GCCGATCCCCGACTTGCGCATC-CGCCCCTCT
* * *
17837636 GGCCGGTTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATTCCCAGT
704 GGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
17837701 CTAAG-AT-C-AG-A-CC-G-GA-C-C-A-AAGGTTACGACAGCACATGCTAGGCTCGAGCATGT
769 CTAAGCATACGAGTATCCAGAGATCACAACAAGGTTACGACAGCACATGCTAGGCTCGAGCATGT
* *
17837755 GCTGGTGCCGTATTTTTCTTCACCGGGGCAC
834 GCTGGTGCCATATTTTTCTTCACCAGGGCAC
* * *
17837786 AATATCGAAGCATCACCGGAGAACCTGACCGGTGGCATTCGGGTTCCGGTGATCGGGGGGCC-GG
1 --CATC---G--T---CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGCCGGG
* *
17837850 GGGGGTGTGCGCACAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCC
56 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
17837915 TCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
121 TCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
17837980 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCG
186 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
17838045 AGTTTTTAGTTGAATTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
251 AGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * ** * * ** *
17838110 GCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGTAAAAATTTTTGAAAATTATGAA
316 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAAAACCGCAAAAAGTTTCAAAAATTGTGAA
17838175 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG-TTAAGGGACCATTGTATGAAT
381 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
**
17838239 TTACAAGCCATAAAAATGGTATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
446 TTACAAGCCATAAAAATGGTATTGGCACATAGAAATATGAAGATGTGCCTAAA-CCACCTA-CAC
* * *
17838304 TCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTG--TCCGTCTG---CTCG
509 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGG-CGGCGTAGTGCCTCCGCCCGCCCCTCG
*
17838364 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-TCGAGGGT
573 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GA-GGT
* * * *
17838428 TGTGGTAGCAGGATCGACAGCATGCAGAGGGTGACCCGACCGATCCCC-AGCTTGCGCATCCCGC
636 TGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCG-CCGATCCCCGA-CTTGCGCAT-CCGC
* *
17838492 CCCTCTAGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
698 CCCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
*
17838557 CCCAATCTAAGCATACG
763 CCCAGTCTAAGCATACG
17838574 GAGTTCATTC
Statistics
Matches: 1468, Mismatches: 150, Indels: 89
0.86 0.09 0.05
Matches are distributed among these distances:
861 3 0.00
862 177 0.12
863 5 0.00
864 59 0.04
866 8 0.01
867 1 0.00
869 2 0.00
870 122 0.08
871 145 0.10
872 196 0.13
873 5 0.00
874 41 0.03
879 1 0.00
880 2 0.00
883 1 0.00
886 95 0.06
887 207 0.14
888 109 0.07
889 210 0.14
890 33 0.02
891 46 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (864 bp):
CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCGAAAAAATTTTAAAAAATCCAAAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGTATTGGCACATAGAAATATGAAGATGTGCCTAAACCACCTACACCCTATCGATCCA
CGGCTTGCGCATCCCGTCTCTTTGGCGGCGTAGTGCCTCCGCCCGCCCCTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGTTGCGGCAGCAGGATC
GACAGCACGCAGAGGGGGACCCGCCGATCCCCGACTTGCGCATCCGCCCCTCTGGTCGGTTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
GTATCCAGAGATCACAACAAGGTTACGACAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCATA
TTTTTCTTCACCAGGGCAC
Found at i:17838577 original size:26 final size:26
Alignment explanation
Indices: 17838541--17838619 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
17838531 GTTGACTTAG
17838541 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17838567 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17838593 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17838619 G
1 G
17838620 ATCGGATCGG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17838717 original size:7 final size:7
Alignment explanation
Indices: 17838664--17838702 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
17838654 TGGGCTCGAG
17838664 AAAATAA
1 AAAATAA
17838671 AAAATAA
1 AAAATAA
** *
17838678 TGAATCA
1 AAAATAA
17838685 AAAATAA
1 AAAATAA
17838692 AAAATAA
1 AAAATAA
17838699 AAAA
1 AAAA
17838703 AGACAAAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (7 bp):
AAAATAA
Found at i:17840881 original size:17 final size:17
Alignment explanation
Indices: 17840845--17840886 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
17840835 AAATTTATGA
* *
17840845 AAATATAAATAAAGAAAG
1 AAATA-AAAAAAAAAAAG
17840863 AAATAAAAAAAAAAAAG
1 AAATAAAAAAAAAAAAG
17840880 AAA-AAAA
1 AAATAAAA
17840887 TATTAAAGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 4 0.18
17 13 0.59
18 5 0.23
ACGTcount: A:0.83, C:0.00, G:0.07, T:0.10
Consensus pattern (17 bp):
AAATAAAAAAAAAAAAG
Found at i:17840948 original size:20 final size:21
Alignment explanation
Indices: 17840901--17840954 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 21
17840891 AAAGCAAAAC
*
17840901 AAAAAATATAAAATATAAAGT
1 AAAAAATAAAAAATATAAAGT
*
17840922 AAGAAAATAAAAAATATGAA-T
1 AA-AAAATAAAAAATATAAAGT
*
17840943 CAAAAATAAAAA
1 AAAAAATAAAAA
17840955 TAAAAAAAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 10 0.34
21 4 0.14
22 15 0.52
ACGTcount: A:0.74, C:0.02, G:0.06, T:0.19
Consensus pattern (21 bp):
AAAAAATAAAAAATATAAAGT
Found at i:17841597 original size:16 final size:15
Alignment explanation
Indices: 17841572--17841611 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
17841562 AAAAATTTAT
* *
17841572 GAAAATATAAATAAA
1 GAAAAAATAAAAAAA
17841587 GAAAGAAATAAAAAAA
1 GAAA-AAATAAAAAAA
17841603 GAAAAAATA
1 GAAAAAATA
17841612 TTAAAGCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.78, C:0.00, G:0.10, T:0.12
Consensus pattern (15 bp):
GAAAAAATAAAAAAA
Found at i:17841644 original size:22 final size:24
Alignment explanation
Indices: 17841619--17841662 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
17841609 ATATTAAAGC
*
17841619 AAAA-CAA-AAAATATAAAATATA
1 AAAAGCAAGAAAATAAAAAATATA
*
17841641 AAAAGTAAGAAAATAAAAAATA
1 AAAAGCAAGAAAATAAAAAATA
17841663 ATGAATCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 4 0.22
23 2 0.11
24 12 0.67
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (24 bp):
AAAAGCAAGAAAATAAAAAATATA
Found at i:17841660 original size:7 final size:7
Alignment explanation
Indices: 17841619--17841687 Score: 59
Period size: 7 Copynumber: 9.6 Consensus size: 7
17841609 ATATTAAAGC
*
17841619 AAAACAA
1 AAAATAA
17841626 AAAATATA
1 AAAATA-A
17841634 AAATATAA
1 AAA-ATAA
*
17841642 AAAGTAA
1 AAAATAA
17841649 GAAAATAA
1 -AAAATAA
17841657 AAAATAA
1 AAAATAA
** *
17841664 TGAAT-C
1 AAAATAA
17841670 AAAATAA
1 AAAATAA
17841677 AAAATAA
1 AAAATAA
17841684 AAAA
1 AAAA
17841688 GACAAAAATG
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
6 3 0.06
7 29 0.59
8 14 0.29
9 3 0.06
ACGTcount: A:0.77, C:0.03, G:0.04, T:0.16
Consensus pattern (7 bp):
AAAATAA
Found at i:17841994 original size:724 final size:730
Alignment explanation
Indices: 17840502--17848704 Score: 13297
Period size: 738 Copynumber: 11.3 Consensus size: 730
17840492 NNNNNNNNNT
17840502 AAAATAAAAAATCCAAGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCGAA
1 AAAATAAAAAATCCAAGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCGAA
17840567 AAAAATTAGAAAAACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGA
66 AAAAATTAGAAAAACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGA
17840632 AAAAATGTTTTGTAGAAA-TTTTAAAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGC
131 AAAAATGTTTTGTAGAAATTTTTAAAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGC
17840696 ACATGAAAAAATAAGTAAAAAAAAAA-AAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATA
196 ACATGAAAAAATAAG-AAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATA
17840760 AAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATAAAAAAATCCAA
260 AAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATAAAAAAATCCAA
17840825 AACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAAAAAAAGAAAAAAATAT
325 AACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAAT-----AAAAAAAG-AAAAAATAT
17840890 TAAAGCAAAACAAAAAATATAAAATAT--AAAGTAAGAAAATAAAAAAT-ATGAATCAAAA-ATA
384 TAAAGCAAAACAAAAAATATAAAATATAAAAAGTAAGAAAATAAAAAATAATGAATCAAAATA-A
17840951 AAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAAATATTTGAAAAAATACA
448 AAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAG-AAAAAAATATTTGAAAAAATACA
17841016 AAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAA-G--AAAAAATTAA
512 AAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAGGACAAAAAATTAA
17841078 AAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAAAAAACTA
577 AAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAAAAAACTA
17841143 TAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAATTAAGAAAAGAATAAA
642 TAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAATTAAGAAAAGAATAAA
17841208 AATGAAAAGACAAAAGATTTATGA
707 AATGAAAAGACAAAAGATTTATGA
17841232 AAAATAAAAAATCCAAGGAAGTGTG-AAAAAAAATGGAAACAAGAAA-AAAAAGAATTTTGCGAA
1 AAAATAAAAAATCCAAGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCGAA
17841295 AAAAATTAGAAAAACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGA
66 AAAAATTAGAAAAACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGA
17841360 AAAAATGTTTTGTAGAAATTTTTAAAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGC
131 AAAAATGTTTTGTAGAAATTTTTAAAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGC
17841425 ACATGAAAAAATAAGAAAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATA
196 ACATGAAAAAATAAG-AAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATA
17841490 AAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAAT-AAAAAATCCAA
260 AAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATAAAAAAATCCAA
17841554 AACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAAGAAAAAATATTAAAGC
325 AACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAAGAAAAAATATTAAAGC
17841619 AAAACAAAAAATATAAAATATAAAAAGTAAGAAAATAAAAAATAATGAATCAAAATAAAAAAT-A
390 AAAACAAAAAATATAAAATATAAAAAGTAAGAAAATAAAAAATAATGAATCAAAATAAAAAATAA
17841683 AAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAATATTTGAAAAAATACAAAAAATTG
455 AAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAATATTTGAAAAAATACAAAAAATTG
17841748 AAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAGGACAAAAAATTAAAAAAGAGA
520 AAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAGGACAAAAAATTAAAAAAGAGA
17841813 AAAGTTAATGCAAAATAAAAATGAAAACG-AAAAAGAAAATGCAACAAAAAAAAACTATAAGAAT
585 AAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAAC-AAAAAAAACTATAAGAAT
17841877 TTAAAAATGAAAATAAAAAAT-AAAAGAAATTTGTG-AAAAATTAAGAAAAGAATAAAAATG-AA
649 TTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAATTAAGAAAAGAATAAAAATGAAA
17841939 AGACAAAAGATTTATGA
714 AGACAAAAGATTTATGA
17841956 AAAATAAAAAATCCAAGGAAGTGTG-AAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCG-A
1 AAAATAAAAAATCCAAGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCGAA
17842019 AAAAATTAGAAAAACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAAT-AAATAAAAAGA
66 AAAAATTAGAAAAACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGA
*
17842083 AAAAATGTTTTGTAGAAAATTTTAAAACGAAG-AAAAAAGTGAAAACAAAAGAAAATATGAAAGC
131 AAAAATGTTTTGTAGAAATTTTTAAAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGC
17842147 ACATGAAAAAATAAGTAAAAAAAAAAAGAAAAATTTAAAAGG-AAAAGAGTTAATG-AAAATTAT
196 ACATGAAAAAATAAG--AAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTAT
17842210 -AAAATACAATAG-AAATAAGAAACAACGATAAATAAAAAAA-AGAAAGAAAAATAAAAAAATCC
259 AAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGA-AAAGAAAAATAAAAAAATCC
17842272 AAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAAT-AAAAAAGAAAAAAATATTAA
323 AAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAAG-AAAAAATATTAA
*
17842336 AGCAAAACAAAAAATAT-AAATATAAAAAGTAAGAAAAT-AAAAATGATGAATCAAAAT--AAAA
387 AGCAAAACAAAAAATATAAAATATAAAAAGTAAGAAAATAAAAAATAATGAATCAAAATAAAAAA
17842397 T-AAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAATATTTGAAAAAATACAAAAAA
452 TAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAATATTTGAAAAAATACAAAAAA
17842461 TTG-AAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAGGAC-AAAAATTAAAAAAG
517 TTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAGGACAAAAAATTAAAAAAG
17842524 AGAAAAGTTAATGCAAAATAAAAATGAAAACG-AAAAAGAAAATGCAACAAAAAAAA--ACTAAG
582 AGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAAAAAACTA-TAAG
*
17842586 AATTTAAAAATGAAAAT-AAAAATAAAAAGGAATTTGTGAAAAAATTAAGAAAAGAATAAAAATG
646 AATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAATTAAGAAAAGAATAAAAATG
17842650 AAAAGACAAAAGATTTATGA
711 AAAAGACAAAAGATTTATGA
17842670 AAAATAAAAAATCCAAGGAAGTGTG-AAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCGAA
1 AAAATAAAAAATCCAAGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCG-A
17842734 AAAAAATTAGAAAAACAAG-AAAAATAAAAAATGAAGAGGC-AAAATATGAAAT-AAATAAAAAG
65 AAAAAATTAGAAAAACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAG
17842796 -AAAAATGTTTTGTAGAAATTTTTAAAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAG
130 AAAAAATGTTTTGTAGAAATTTTTAAAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAG
*
17842860 CACATGAAAAAATAAGTAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATA
195 CACATGAAAAAATAAGAAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATA
17842925 AAAATACAATAGAAAATAAGAAACAACGATAAAT-AAAAAAGAAAAGAAAAATAAAAAAATCCAA
260 AAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATAAAAAAATCCAA
*
17842989 AACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAAT------A-AAAAAA-ATTGAAG-
325 AACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAAGAAAAAATATTAAAGC
* * *
17843045 -TAA-AAAATATATAAAATATAAAAAGTAAGAAAATAAAAAATGATGAATCAGAAATAAAAAAT-
390 AAAACAAAAAATATAAAATATAAAAAGTAAGAAAATAAAAAATAATGAATCA-AAATAAAAAATA
* *
17843107 -AAAAAGTCAAAAATGAAATGAAACTAGAAAATAGAAAAAAATATTTGAAAAAATACAAAAAATT
454 AAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAATATTTGAAAAAATACAAAAAATT
* * *
17843171 GAAAAACATAAAAGATATAATAAG-AAACAATATAAAAATTCAAAGACAAAAAATTAAAAAAAAG
519 GAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAGGACAAAAAATTAAAAAAGAG
17843235 AAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAAAAAAACTATAAGAA
584 AAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAAC-AAAAAAAACTATAAGAA
* *
17843300 TTTACAAATGAAAATAAAAAATAAAAAGAAATTTGTGGAAAAATTAAGAAAAGAATAAAAATGAA
648 TTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAATTAAGAAAAGAATAAAAATGAA
17843365 AAGACAAAAGATTTATGA
713 AAGACAAAAGATTTATGA
*
17843383 AAAATAAAAAATCTAAGGAAGTGTTG-AAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCG-
1 AAAATAAAAAATCCAAGGAAGTG-TGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCGA
17843446 AAAAAATTAGAAAAAACAAGAAAAAATAAAAAATGAAGAGGCGAAAAATATGAAATAAAATAAAA
65 AAAAAATTAG-AAAAACAAGAAAAAATAAAAAATGAAGAGGC-AAAAATATGAAATAAAAT-AAA
17843511 AAGAAAAAATGTTTTGTAGAAATTTTTAAAACGAAGAAAAAAAGTG-AAACAAAAGAAAATATGA
127 AAGAAAAAATGTTTTGTAGAAATTTTTAAAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGA
*
17843575 AAGCACATGAAAAAATAAGTAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATT
192 AAGCACATGAAAAAATAAGAAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATT
17843640 ATAAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATAAAAAAATC
257 ATAAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATAAAAAAATC
*
17843705 CAAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAAGAAAAATAAAAAATGAAAAAA
322 CAAAACATTATAAAAATTTATGAAAATATAAAT----AAAGAAAG--AAATAAAAAAAGAAAAAA
* * *
17843770 AATTAAAGAAAAACAAAAAATATAAAATATAAAAAGTAAGAAAATAAAAAATGATGAATCAAAA-
381 TATTAAAGCAAAACAAAAAATATAAAATATAAAAAGTAAGAAAATAAAAAATAATGAATCAAAAT
17843834 ATAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAATATTTGAAAAAATA
446 A-AAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAATATTTGAAAAAATA
17843899 CAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGGACAAAAAAT
510 CAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTC-AAGGACAAAAAAT
17843964 TAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAAAAAA
574 TAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAAC-AAAAAAA
17844029 ACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTG-AAAAATTAAGAAAAGAA
638 ACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAATTAAGAAAAGAA
17844093 TAAAAATGAAAAGACAAAAGATTTATGA
703 TAAAAATGAAAAGACAAAAGATTTATGA
*
17844121 AAAATAAAAAATCCAAGGAAGTGTG-AAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGCGAA
1 AAAATAAAAAATCCAAGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCGAA
17844185 AAAAATTAGAAAAACAAG-AAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGA
66 AAAAATTAGAAAAACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGA
17844249 AAAAATGTTTTGTAGAAATTTTTAAAACGAAG-AAAAAAGTGAAAACAAAAGAAAATATGAAAGC
131 AAAAATGTTTTGTAGAAATTTTTAAAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGC
*
17844313 ACATGAAAAAATAAGTAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAA
196 ACATGAAAAAATAAGAAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAA
17844378 AAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAG-AAAGAAAAATAAAAAAATCCAAA
261 AAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATAAAAAAATCCAAA
*
17844442 ACATTATAAAAATTTTTGAAAATATAAATAAAGAAAGAAAT-AAAAAAGAAAAAA-ATTAAAGCA
326 ACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAAGAAAAAATATTAAAGCA
*
17844505 AAACAAAAAATATAAAATATAAAAAGTAAAAAAATAAAAAATAATGAATCAAAAATAAAAAATAA
391 AAACAAAAAATATAAAATATAAAAAGTAAGAAAATAAAAAATAATGAATC-AAAATAAAAAATAA
*
17844570 AAAAAGGCAAAAATGAAATGAAACGAGAAAATAGAAAAAAATATTTG-AAAAATACAAAAAATTG
455 AAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAATATTTGAAAAAATACAAAAAATTG
17844634 AAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCGAA-GACAAAAAATTAAAAAAGAG
520 AAAAACATATAAGATATAATAAGAAAACAATATAAAAATTC-AAGGACAAAAAATTAAAAAAGAG
* *
17844698 AAAAGTTAATGCAAAATAAAAATGATAACGAAAAAAGAAAATGCAACAAAAAAAACTATAAAAAT
584 AAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAAAAAACTATAAGAAT
17844763 TTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAATTAAGAAAAGAATAAAAA-GACA
649 TTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAATTAAGAAAAGAATAAAAATG--A
17844827 AAAGACAAAAGATTTATGA
712 AAAGACAAAAGATTTATGA
* * *
17844846 AAAATAAAAAATCCAAGGGAGTGTGAAAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGTGAA
1 AAAATAAAAAATCCAAGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCGAA
17844911 AAAAATTAGAAAAACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAAT-AAAAGA
66 AAAAATTAGAAAAACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGA
*
17844975 AAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGC
131 AAAAATGTTTTGTAGAAATTTTTAAAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGC
*
17845040 ACATGAAAAAATAAGTAAAAAAAAAAGGAAAAATTTAAAAGGAAAAGGAG-TAATG-AAAATTAT
196 ACATGAAAAAATAAG-AAAAAAAAAA-GAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTAT
* *
17845103 AAAAATACAATAGAAAATAAGAAACAACGATAAATAAGAAAAGAAAAGAAAATTAAAAAAATCCA
259 AAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATAAAAAAATCCA
* * *
17845168 AAACATTATACAAATTTATTAAAATATAAATAAAGAAAGAAATAAAAAATTAAAAAAAAATATTA
324 AAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAAT-AAAAA--AAGAAAAAATATTA
* *
17845233 AAGCAAAA-TAAAAAT-TAATGAAT-CAAAAA-TAA-AAAAT-AAAAA-AA-G-A-CAAAAATGA
386 AAGCAAAACAAAAAATATAA--AATATAAAAAGTAAGAAAATAAAAAATAATGAATC-AAAAT-A
** * * * *** * * * *
17845288 AATGAAACGAGAAAATAGAAAAA--AAAT-ATTTGA-AAAA-ATACAAAAA-ATTGGAAAACATA
447 AA--AAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAATATTTGAAAAAATA
* * * * * *
17845347 TAAGATATAATAAGAAAAAAATATAA-A-A-ATTCAAGGATAAA-AA-ATTAAAA---AA-GAGA
510 CAA-A-A-AAT-TGAAAAACATATAAGATATAAT-AA-GA-AAACAATATAAAAATTCAAGGACA
** * ** *
17845403 AAAGTTAATGCAAA-A-----------------TAAAAATGAAAAGGAAAAAAGAAAATGCAACA
568 AAAAATTA-AAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACA
*
17845450 AAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAGTAAAAAGAAATTTGTGAAAAAATTAAGA
632 AAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAATTAAGA
*
17845515 AAAGAAAAAAAATGAAAAGACAAAAGATTTATGA
697 AAAGAATAAAAATGAAAAGACAAAAGATTTATGA
* *
17845549 AAAATAAAAAATCCAAGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAGAAAGAATTTTGTGAA
1 AAAATAAAAAATCCAAGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCGAA
17845614 AAAAATTAGAAAAACAAG-AAAAAT-AAAAATGAAGAGGC-AAAATATGAAATAAAATAAAAAGA
66 AAAAATTAGAAAAACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGA
*
17845676 AAAAATG-TTTGTAGAAAATTTT-AAACGAAG-AAAAAAGTGAAAACAAAAGAAAATATGAAAGC
131 AAAAATGTTTTGTAGAAATTTTTAAAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGC
*
17845738 ACATGAAAAAATAAG-TAAAAAAAAGAAAAATTT-AAAGGAAAAAGAGTTAATGAAAAAATTATA
196 ACATGAAAAAATAAGAAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATG-AAAAATTATA
* *
17845801 AAAATACAATAGAAAATAAGAAACAACAATAAAT--AAAAA-AAAAG------AAAAAAATCGAA
260 AAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATAAAAAAATCCAA
*
17845857 AACATTATAAAATTTTATGAAAATATAAATAAAGAAAGAAGTAAAAAACTAAAAAAAGAAAAAAA
325 AACATTATAAAAATTTATGAAAATATAAATAAAG--A-AAG----AAA-TAAAAAAAG-AAAAAA
* * * * * *
17845922 TATTAACGCAAAACAAAAAATAT-AAATA-AAATACAATAA-AATATAAAATATAA-AAAGTAAG
381 TATTAAAGCAAAACAAAAAATATAAAATATAAA-A-AGTAAGAAAATAAAAAATAATGAA-T--C
*
17845983 AAAATAAAAAATAAAAAAAGGCAAAAATGAAATGAAACGAGAAAATAGAAAAAAATATTTGAAAA
441 AAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAATATTTGAAAA
* * * *
17846048 AATACAAAAAATTGAAAAACATATAAGATATACTAGGAAAAAAATATAAAAATTCAAAGACAAAA
506 AATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAGGACAAAA
17846113 AATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAAA
571 AATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAAA
*
17846178 AAACTATAAGAATTTACAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAATTAAGAAAAG
636 AAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAATTAAGAAAAG
17846243 AATAAAAATGAAAAGACAAAAGATTTATGA
701 AATAAAAATGAAAAGACAAAAGATTTATGA
* *
17846273 AAAGTAAAAAATCCAAGGAAGTGTGAAAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGCGAA
1 AAAATAAAAAATCCAAGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCGAA
17846338 AAAAATTAGAAAAACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGA
66 AAAAATTAGAAAAACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGA
*
17846403 AAAAATGTTTTGTAGAAAATTTTAAAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGC
131 AAAAATGTTTTGTAGAAATTTTTAAAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGC
* *
17846468 ACATGAAAAAATAAG-TAAAAAAAAGAAAAATTTAAAAGGAAAAAGATTTAATGAAAAATTATAA
196 ACATGAAAAAATAAGAAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAA
*
17846532 AAATAGAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATAAAAAAATCCAAA
261 AAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATAAAAAAATCCAAA
* *
17846597 ACATTATAAAAATTTATGAAAATATAAATAACGAAAGAAATAAAAAATAAAAAAAGAAAAAAAAT
326 ACATTATAAAAATTTATGAAAATATAAAT----AAAG--A-AAGAAATAAAAAAAGAAAAAATAT
*
17846662 TAAAGCAAAACAAAAAATATAAAATATAAAAAGTAAGAAAATAAAAAATGATGAATCAAAAATAA
384 TAAAGCAAAACAAAAAATATAAAATATAAAAAGTAAGAAAATAAAAAATAATGAATC-AAAATAA
*
17846727 AAAATAAAAAAAGTCAAAAATGAAATGAAACGAGAAAATAGAAAAAAAATATTTGAAAAAATACA
448 AAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAG-AAAAAAATATTTGAAAAAATACA
17846792 AAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAGGACAAAAAATTAA
512 AAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAGGACAAAAAATTAA
* *
17846857 AAAAGAGAAAAATTAATGCAAAATAAAAATGAAAACAAAAAAAGAAAATGCAACAAAAAAAACTA
577 AAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAAAAAACTA
17846922 TAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAATTAAGAAAAGAATAAA
642 TAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAATTAAGAAAAGAATAAA
17846987 AATGAAAAGACAAAAGATTTATGA
707 AATGAAAAGACAAAAGATTTATGA
* * *
17847011 AAAATAAAAAATCCAAGGGAGTGTGAAAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGTGAA
1 AAAATAAAAAATCCAAGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCGAA
17847076 AAAAATTAGAAAAACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGA
66 AAAAATTAGAAAAACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGA
*
17847141 AAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGC
131 AAAAATGTTTTGTAGAAATTTTTAAAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGC
*
17847206 ACATGAAAAAATAAGTAAAAAAAAAAAGAAAAATTTAAAAGGAAAAGGAGTTAATGAAAAATTAT
196 ACATGAAAAAATAAG--AAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTAT
* * *
17847271 AAAAATATAATAGAAAATAAGAAACAACAATAAATAAAAAAAGAAAAGAAATATAAAAAAATCCA
259 AAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATAAAAAAATCCA
* *
17847336 AAACATTAGAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAATAAAAAAACAAAAAAA
324 AAACATTATAAAAATTTATGAAAATATAAATAAAGAAAG-------AAATAAAAAAA-GAAAAAA
*
17847401 TATTAAAGCAAAATAAAAAAATATAAAATATAAAAAGTAAGAAAATAAAAAATAATGAATCAAAA
381 TATTAAAGCAAAA-CAAAAAATATAAAATATAAAAAGTAAGAAAATAAAAAATAATGAATC-AAA
* *
17847466 ATAAAAAATAAAAAAAAGAAAAAAATGAAATGAAACGAGACAATAGAAAAAAAATATTTGAAAAA
444 ATAAAAAAT-AAAAAAAGACAAAAATGAAATGAAACGAGAAAATAG-AAAAAAATATTTGAAAAA
*
17847531 ATACAAAAATTTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAGGACAAAAA
507 ATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAGGACAAAAA
* *
17847596 ATTAAAAAAGAGAAAAATTAATGCAAAATAAAAATGAAAACAAAAAAAGAAAATGCAACAAAAAA
572 ATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAAAA
17847661 AACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAATTAAGAAAAGA
637 AACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAATTAAGAAAAGA
*
17847726 AAAAAAATGAAAAGACAAAAGATTTATGA
702 ATAAAAATGAAAAGACAAAAGATTTATGA
* * *
17847755 AAAATAAAAAATCCAAGGGAGTGTGAAAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGTGAA
1 AAAATAAAAAATCCAAGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCGAA
17847820 AAAAATTAGAAAAACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGA
66 AAAAATTAGAAAAACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGA
*
17847885 AAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGC
131 AAAAATGTTTTGTAGAAATTTTTAAAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGC
*
17847950 ACATGAAAAAATAAGTAAAAAAAAAAGAAAAATTTAAAAGGAAAAGGAGTTAATGAAAAATTATA
196 ACATGAAAAAATAAG-AAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATA
* *
17848015 AAAATATAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAATATAAAAAAATCCAA
260 AAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATAAAAAAATCCAA
* *
17848080 AACATTAGAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAATAAAAAAACAAAAAAAT
325 AACATTATAAAAATTTATGAAAATATAAATAAAGAAAG-------AAATAAAAAAA-GAAAAAAT
*
17848145 ATTAAAGCAAAATAAAAAAATATAAAATATAAAAAGTAAGAAAATAAAAAATAATGAATCAAAAA
382 ATTAAAGCAAAA-CAAAAAATATAAAATATAAAAAGTAAGAAAATAAAAAATAATGAATC-AAAA
*
17848210 TAAAAAATAAAAAAAGA-AAAAATGAAATGAAACGAGACAATAGAAAAAAAATATTTGAAAAAAT
445 TAAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAG-AAAAAAATATTTGAAAAAAT
17848274 ACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAGGACAAAAAAT
509 ACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAGGACAAAAAAT
* *
17848339 TAAAAAAGAGAAAAATTAATGCAAAATAAAAATGAAAACAAAAAAAGAAAATGCAACAAAAAAAA
574 TAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAAAAAA
*
17848404 CTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAATTAAGAAAAGAAA
639 CTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAATTAAGAAAAGAAT
17848469 AAAAATGAAAAGACAAAAGATTTATGA
704 AAAAATGAAAAGACAAAAGATTTATGA
*
17848496 AAAATAAAAAATCCAAGGAAGTGTG-AAAAAAAATGGAAACAAGAAATAAAAAAAATTTTGCGAA
1 AAAATAAAAAATCCAAGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCGAA
17848560 AAAAATTAGAAAAACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGA
66 AAAAATTAGAAAAACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGA
*
17848625 AAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGC
131 AAAAATGTTTTGTAGAAATTTTTAAAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGC
17848690 ACATGAAAAAATAAG
196 ACATGAAAAAATAAG
17848705 CTTAAGGGAC
Statistics
Matches: 7086, Mismatches: 186, Indels: 392
0.92 0.02 0.05
Matches are distributed among these distances:
688 42 0.01
690 1 0.00
691 3 0.00
693 8 0.00
694 36 0.01
695 34 0.00
696 17 0.00
697 46 0.01
698 49 0.01
699 21 0.00
700 31 0.00
701 49 0.01
702 22 0.00
703 113 0.02
704 122 0.02
705 37 0.01
706 20 0.00
707 19 0.00
708 91 0.01
709 71 0.01
710 17 0.00
711 15 0.00
712 88 0.01
713 174 0.02
714 280 0.04
715 149 0.02
716 124 0.02
717 4 0.00
718 145 0.02
719 168 0.02
720 94 0.01
721 19 0.00
722 67 0.01
723 181 0.03
724 503 0.07
725 286 0.04
726 240 0.03
727 275 0.04
728 204 0.03
729 188 0.03
730 232 0.03
731 24 0.00
732 30 0.00
733 86 0.01
734 170 0.02
735 30 0.00
736 67 0.01
737 214 0.03
738 561 0.08
739 170 0.02
740 181 0.03
741 439 0.06
742 27 0.00
743 318 0.04
744 484 0.07
ACGTcount: A:0.67, C:0.04, G:0.11, T:0.17
Consensus pattern (730 bp):
AAAATAAAAAATCCAAGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCGAA
AAAAATTAGAAAAACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGA
AAAAATGTTTTGTAGAAATTTTTAAAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGC
ACATGAAAAAATAAGAAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAA
AAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATAAAAAAATCCAAA
ACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAAGAAAAAATATTAAAGCA
AAACAAAAAATATAAAATATAAAAAGTAAGAAAATAAAAAATAATGAATCAAAATAAAAAATAAA
AAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAATATTTGAAAAAATACAAAAAATTGA
AAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAGGACAAAAAATTAAAAAAGAGAA
AAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAAAAAACTATAAGAATTT
AAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAATTAAGAAAAGAATAAAAATGAAAAG
ACAAAAGATTTATGA
Found at i:17842263 original size:23 final size:23
Alignment explanation
Indices: 17842210--17842268 Score: 57
Period size: 23 Copynumber: 2.6 Consensus size: 23
17842200 TGAAAATTAT
* *
17842210 AAAATACAATAGAAATAAGAAACA
1 AAAATA-AATAAAAAAAAGAAACA
** *
17842234 ACGATAAATAAAAAAAAGAAAGA
1 AAAATAAATAAAAAAAAGAAACA
17842257 AAAATAAA-AAAA
1 AAAATAAATAAAA
17842269 TCCAAAACAT
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
22 4 0.14
23 20 0.71
24 4 0.14
ACGTcount: A:0.76, C:0.05, G:0.08, T:0.10
Consensus pattern (23 bp):
AAAATAAATAAAAAAAAGAAACA
Found at i:17842322 original size:15 final size:16
Alignment explanation
Indices: 17842293--17842331 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
17842283 AAAATTTATG
*
17842293 AAAATATAAATAAAGA
1 AAAAAATAAATAAAGA
*
17842309 AAGAAATAAA-AAAGA
1 AAAAAATAAATAAAGA
17842324 AAAAAATA
1 AAAAAATA
17842332 TTAAAGCAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.79, C:0.00, G:0.08, T:0.13
Consensus pattern (16 bp):
AAAAAATAAATAAAGA
Found at i:17843755 original size:18 final size:18
Alignment explanation
Indices: 17843724--17843780 Score: 64
Period size: 18 Copynumber: 3.1 Consensus size: 18
17843714 ATAAAAATTT
17843724 ATGAAAATATAAATAAAGAA
1 ATGAAAA-A-AAATAAAGAA
17843744 A-GAAAGAAAAATAAA-AA
1 ATGAAA-AAAAATAAAGAA
17843761 ATGAAAAAAAATTAAAGAA
1 ATGAAAAAAAA-TAAAGAA
17843780 A
1 A
17843781 AACAAAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
17 8 0.24
18 15 0.45
19 8 0.24
20 2 0.06
ACGTcount: A:0.75, C:0.00, G:0.11, T:0.14
Consensus pattern (18 bp):
ATGAAAAAAAATAAAGAA
Found at i:17843762 original size:7 final size:7
Alignment explanation
Indices: 17843750--17843847 Score: 58
Period size: 7 Copynumber: 13.7 Consensus size: 7
17843740 AGAAAGAAAG
17843750 AAAAATA
1 AAAAATA
17843757 AAAAATGA
1 AAAAAT-A
17843765 AAAAA-A
1 AAAAATA
* *
17843771 ATTAAAGA
1 A-AAAATA
17843779 AAAACA-A
1 AAAA-ATA
17843786 AAAATATA
1 AAAA-ATA
*
17843794 AAATATA
1 AAAAATA
*
17843801 AAAAGTA
1 AAAAATA
17843808 AGAAAATA
1 A-AAAATA
*
17843816 AAAAATG
1 AAAAATA
** *
17843823 ATGAATC
1 AAAAATA
17843830 AAAAAT-
1 AAAAATA
17843836 AAAAATA
1 AAAAATA
17843843 AAAAA
1 AAAAA
17843848 AGACAAAAAT
Statistics
Matches: 71, Mismatches: 13, Indels: 14
0.72 0.13 0.14
Matches are distributed among these distances:
6 8 0.11
7 44 0.62
8 19 0.27
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (7 bp):
AAAAATA
Found at i:17843805 original size:28 final size:28
Alignment explanation
Indices: 17843746--17843803 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
17843736 ATAAAGAAAG
* *
17843746 AAAGAAAAATAAAAAATGAAAAAAAATT
1 AAAGAAAAACAAAAAATGAAAAAAAATA
* *
17843774 AAAGAAAAACAAAAAAT-ATAAAATATA
1 AAAGAAAAACAAAAAATGAAAAAAAATA
17843801 AAA
1 AAA
17843804 AGTAAGAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 10 0.38
28 16 0.62
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.14
Consensus pattern (28 bp):
AAAGAAAAACAAAAAATGAAAAAAAATA
Found at i:17844430 original size:22 final size:23
Alignment explanation
Indices: 17844376--17844435 Score: 61
Period size: 22 Copynumber: 2.6 Consensus size: 23
17844366 GAAAAATTAT
17844376 AAAAATACAATAGAAAATAAGAAAC
1 AAAAATA-AATA-AAAATAAGAAAC
** *
17844401 AACGATAAATAAAAA-AAGAAAG
1 AAAAATAAATAAAAATAAGAAAC
17844423 AAAAATAAA-AAAA
1 AAAAATAAATAAAA
17844436 TCCAAAACAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 13 0.43
23 4 0.13
24 4 0.13
25 5 0.17
ACGTcount: A:0.77, C:0.05, G:0.08, T:0.10
Consensus pattern (23 bp):
AAAAATAAATAAAAATAAGAAAC
Found at i:17844489 original size:15 final size:16
Alignment explanation
Indices: 17844460--17844497 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
17844450 AAAATTTTTG
*
17844460 AAAATATAAATAAAGA
1 AAAAAATAAATAAAGA
*
17844476 AAGAAATAAA-AAAGA
1 AAAAAATAAATAAAGA
17844491 AAAAAAT
1 AAAAAAT
17844498 TAAAGCAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.79, C:0.00, G:0.08, T:0.13
Consensus pattern (16 bp):
AAAAAATAAATAAAGA
Found at i:17844513 original size:60 final size:59
Alignment explanation
Indices: 17844405--17844545 Score: 128
Period size: 60 Copynumber: 2.4 Consensus size: 59
17844395 AGAAACAACG
* * * ** * * *
17844405 ATAAATAAAAAAAGAAA-GAAAAATAAAAAAATCCAAAACATTATAAAAATTTTTGAAAAT
1 ATAAATAAAGAAAGAAATAAAAAAGAAAAAAATCCAAAACAAAACAAAAA-ATAT-AAAAT
* *
17844465 ATAAATAAAGAAAGAAATAAAAAAGAAAAAAAT-TAAAGCAAAACAAAAAATATAAAAT
1 ATAAATAAAGAAAGAAATAAAAAAGAAAAAAATCCAAAACAAAACAAAAAATATAAAAT
*
17844523 AT-AA-AAAGTAAAAAAATAAAAAA
1 ATAAATAAAG-AAAGAAATAAAAAA
17844546 TAATGAATCA
Statistics
Matches: 68, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
56 4 0.06
57 15 0.22
58 7 0.10
59 2 0.03
60 27 0.40
61 13 0.19
ACGTcount: A:0.74, C:0.04, G:0.06, T:0.17
Consensus pattern (59 bp):
ATAAATAAAGAAAGAAATAAAAAAGAAAAAAATCCAAAACAAAACAAAAAATATAAAAT
Found at i:17844543 original size:7 final size:7
Alignment explanation
Indices: 17844504--17844573 Score: 68
Period size: 7 Copynumber: 9.6 Consensus size: 7
17844494 AAATTAAAGC
*
17844504 AAAACAA
1 AAAATAA
17844511 AAAATATA
1 AAAATA-A
17844519 AAATATAA
1 AAA-ATAA
*
17844527 AAAGTAAA
1 AAAAT-AA
17844535 AAAATAA
1 AAAATAA
17844542 AAAATAA
1 AAAATAA
** *
17844549 TGAATCA
1 AAAATAA
17844556 AAAATAA
1 AAAATAA
17844563 AAAATAA
1 AAAATAA
17844570 AAAA
1 AAAA
17844574 AGGCAAAAAT
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
7 34 0.67
8 14 0.27
9 3 0.06
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.16
Consensus pattern (7 bp):
AAAATAA
Found at i:17844574 original size:15 final size:15
Alignment explanation
Indices: 17844460--17844573 Score: 72
Period size: 16 Copynumber: 7.4 Consensus size: 15
17844450 AAAATTTTTG
* * *
17844460 AAAATATAAATAAAG
1 AAAAAATAAAAAAAT
17844475 AAAGAAATAAAAAAGA-
1 AAA-AAATAAAAAA-AT
*
17844491 AAAAAATTAAAGCAAAAC
1 AAAAAA-TAAA--AAAAT
*
17844509 AAAAAATATAAAATAT
1 AAAAAATA-AAAAAAT
*
17844525 AAAAAGTAAAAAAAT
1 AAAAAATAAAAAAAT
**
17844540 AAAAAAT-AATGAAT
1 AAAAAATAAAAAAAT
*
17844554 CAAAAAT-AAAAAAT
1 AAAAAATAAAAAAAT
17844568 AAAAAA
1 AAAAAA
17844574 AGGCAAAAAT
Statistics
Matches: 79, Mismatches: 13, Indels: 15
0.74 0.12 0.14
Matches are distributed among these distances:
14 21 0.27
15 18 0.23
16 25 0.32
17 4 0.05
18 11 0.14
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (15 bp):
AAAAAATAAAAAAAT
Found at i:17845969 original size:7 final size:7
Alignment explanation
Indices: 17845956--17846000 Score: 54
Period size: 7 Copynumber: 6.3 Consensus size: 7
17845946 AATAAAATAC
17845956 AATAAAA
1 AATAAAA
*
17845963 TATAAAA
1 AATAAAA
*
17845970 TATAAAA
1 AATAAAA
*
17845977 AGTAAGAA
1 AATAA-AA
17845985 AATAAAA
1 AATAAAA
17845992 AATAAAA
1 AATAAAA
17845999 AA
1 AA
17846001 AGGCAAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
7 27 0.82
8 6 0.18
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (7 bp):
AATAAAA
Found at i:17846644 original size:19 final size:18
Alignment explanation
Indices: 17846630--17846665 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
17846620 ATAAATAACG
17846630 AAAGAAATAAAAAATAAAA
1 AAAGAAA-AAAAAATAAAA
*
17846649 AAAGAAAAAAAATTAAA
1 AAAGAAAAAAAAATAAA
17846666 GCAAAACAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.83, C:0.00, G:0.06, T:0.11
Consensus pattern (18 bp):
AAAGAAAAAAAAATAAAA
Found at i:17846646 original size:7 final size:7
Alignment explanation
Indices: 17846634--17846737 Score: 61
Period size: 7 Copynumber: 14.4 Consensus size: 7
17846624 ATAACGAAAG
17846634 AAATAAA
1 AAATAAA
17846641 AAATAAA
1 AAATAAA
17846648 AAA-AGAA
1 AAATA-AA
17846655 AAA-AAA
1 AAATAAA
*
17846661 TTAAAGCAAA
1 --AAA-TAAA
17846671 ACAA-AAA
1 A-AATAAA
*
17846678 ATATAAA
1 AAATAAA
*
17846685 ATATAAA
1 AAATAAA
*
17846692 AAGTAAGA
1 AAATAA-A
17846700 AAATAAA
1 AAATAAA
* *
17846707 AAATGAT
1 AAATAAA
* *
17846714 GAATCAA
1 AAATAAA
17846721 AAATAAA
1 AAATAAA
17846728 AAATAAA
1 AAATAAA
17846735 AAA
1 AAA
17846738 AGTCAAAAAT
Statistics
Matches: 78, Mismatches: 11, Indels: 16
0.74 0.10 0.15
Matches are distributed among these distances:
6 4 0.05
7 59 0.76
8 10 0.13
9 2 0.03
10 3 0.04
ACGTcount: A:0.77, C:0.03, G:0.06, T:0.14
Consensus pattern (7 bp):
AAATAAA
Found at i:17846898 original size:19 final size:18
Alignment explanation
Indices: 17846882--17846917 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
17846872 ATGCAAAATA
17846882 AAAATGAAAACAAAAAAAG
1 AAAATG-AAACAAAAAAAG
*
17846901 AAAATGCAACAAAAAAA
1 AAAATGAAACAAAAAAA
17846918 ACTATAAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.78, C:0.08, G:0.08, T:0.06
Consensus pattern (18 bp):
AAAATGAAACAAAAAAAG
Found at i:17846901 original size:738 final size:741
Alignment explanation
Indices: 17845237--17848704 Score: 6101
Period size: 744 Copynumber: 4.7 Consensus size: 741
17845227 ATATTAAAGC
*
17845237 AAAATAAAAATTAATGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAA
1 AAAATAAAAAATAATGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAA
* *
17845302 ATAGAAAAAAAATATTTGAAAAAATACAAAAAATTGGAAAACATATAAGATATAATAAGAAAAAA
66 ATAGAAAAAAAATATTTGAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACA
* * **
17845367 ATATAAAAATTCAAGGATAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAAGG
131 ATATAAAAATTCAAGGACAAAAAATTAAAAAAGAGAAAAATTAATGCAAAATAAAAATGAAAACA
*
17845432 AAAAAAGAAAATGCAACAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAGTAAAAAGAAA
196 AAAAAAGAAAATGCAACAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAA
17845497 TTTGTGAAAAAATTAAGAAAAGAAAAAAAATGAAAAGACAAAAGATTTATGAAAAATAAAAAATC
261 TTTGTGAAAAAATTAAGAAAAGAAAAAAAATGAAAAGACAAAAGATTTATGAAAAATAAAAAATC
* *
17845562 CAAGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAGAAAGAATTTTGTGAAAAAAATTAGAAAA
326 CAAGGAAGTGTGAAAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGTGAAAAAAATTAGAAAA
17845627 ACAAG-AAAAAT-AAAAATGAAGAGGC-AAAATATGAAATAAAATAAAAAGAAAAAATG-TTTGT
391 ACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGT
* *
17845688 AGAAAATTTT-AAACGAAG-AAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAATA
456 AGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAATA
*
17845751 AGT-AAAAAAAAGAAAAATTT-AAAGGAAAAAGAGTTAATGAAAAAATTATAAAAATACAATAGA
521 AGTAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATG-AAAAATTATAAAAATATAATAGA
* * *
17845814 AAATAAGAAACAACAATAAAT--AAAAA-AAAAG------AAAAAAATCGAAAACATTATAAAAT
585 AAATAAGAAACAACAATAAATAAAAAAAGAAAAGAAATATAAAAAAATCCAAAACATTAGAAAAA
* * *
17845870 TTTATGAAAATATAAATAAAGAAAGAAGTAAAAAACTAAAAAAAGAAAAAAATATTAACGCAAAA
650 TTTATGAAAATATAAATAAAGAAAGAAATAAAAAA-TAAAAAAACAAAAAAATATTAAAGCAAAA
* *
17845935 -CAAAAAATAT-AAATA-AAATACAATAA-
714 TAAAAAAATATAAAATATAAA-A-AGTAAG
* * * * *
17845961 AATATAAAATATAA-AAAGTAAGAAAATAAAAAATAAAAAAAGGCAAAAATGAAATGAAACGAGA
1 AAAATAAAAAATAATGAA-TCA-AAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGA
* *
17846025 AAATAG-AAAAAAATATTTGAAAAAATACAAAAAATTGAAAAACATATAAGATATACTAGGAAAA
64 AAATAGAAAAAAAATATTTGAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAA
* * *
17846089 AAATATAAAAATTCAAAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAA
129 CAATATAAAAATTCAAGGACAAAAAATTAAAAAAGAGAAAAATTAATGCAAAATAAAAATGAAAA
* *
17846154 CGAAAAAAGAAAATGCAACAAAAAAAACTATAAGAATTTACAAATGAAAATAAAAAATAAAAAGA
194 CAAAAAAAGAAAATGCAACAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGA
* *
17846219 AATTTGTGAAAAAATTAAGAAAAGAATAAAAATGAAAAGACAAAAGATTTATGAAAAGTAAAAAA
259 AATTTGTGAAAAAATTAAGAAAAGAAAAAAAATGAAAAGACAAAAGATTTATGAAAAATAAAAAA
*
17846284 TCCAAGGAAGTGTGAAAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGCGAAAAAAATTAGAA
324 TCCAAGGAAGTGTGAAAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGTGAAAAAAATTAGAA
17846349 AAACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTT
389 AAACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTT
* *
17846414 GTAGAAAATTTTAAAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAA
454 GTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAA
* *
17846479 TAAGT-AAAAAAAAGAAAAATTTAAAAGGAAAAAGATTTAATGAAAAATTATAAAAATAGAATAG
519 TAAGTAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATATAATAG
* * *
17846543 AAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATAAAAAAATCCAAAACATTATAAAA
584 AAAATAAGAAACAACAATAAATAAAAAAAGAAAAGAAATATAAAAAAATCCAAAACATTAGAAAA
* *
17846608 ATTTATGAAAATATAAATAACGAAAGAAATAAAAAATAAAAAAAGAAAAAAA-ATTAAAGCAAAA
649 ATTTATGAAAATATAAATAAAGAAAGAAATAAAAAATAAAAAAACAAAAAAATATTAAAGCAAAA
*
17846672 -CAAAAAATATAAAATATAAAAAGTAAG
714 TAAAAAAATATAAAATATAAAAAGTAAG
* *
17846699 AAAATAAAAAATGATGAATCAAAAATAAAAAATAAAAAAAGTCAAAAATGAAATGAAACGAGAAA
1 AAAATAAAAAATAATGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAA
17846764 ATAGAAAAAAAATATTTGAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACA
66 ATAGAAAAAAAATATTTGAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACA
17846829 ATATAAAAATTCAAGGACAAAAAATTAAAAAAGAGAAAAATTAATGCAAAATAAAAATGAAAACA
131 ATATAAAAATTCAAGGACAAAAAATTAAAAAAGAGAAAAATTAATGCAAAATAAAAATGAAAACA
17846894 AAAAAAGAAAATGCAACAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAA
196 AAAAAAGAAAATGCAACAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAA
*
17846959 TTTGTGAAAAAATTAAGAAAAGAATAAAAATGAAAAGACAAAAGATTTATGAAAAATAAAAAATC
261 TTTGTGAAAAAATTAAGAAAAGAAAAAAAATGAAAAGACAAAAGATTTATGAAAAATAAAAAATC
*
17847024 CAAGGGAGTGTGAAAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGTGAAAAAAATTAGAAAA
326 CAAGGAAGTGTGAAAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGTGAAAAAAATTAGAAAA
17847089 ACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGT
391 ACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGT
17847154 AGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAATA
456 AGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAATA
*
17847219 AGTAAAAAAAAAAAGAAAAATTTAAAAGGAAAAGGAGTTAATGAAAAATTATAAAAATATAATAG
521 AGT--AAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATATAATAG
17847284 AAAATAAGAAACAACAATAAATAAAAAAAGAAAAGAAATATAAAAAAATCCAAAACATTAGAAAA
584 AAAATAAGAAACAACAATAAATAAAAAAAGAAAAGAAATATAAAAAAATCCAAAACATTAGAAAA
17847349 ATTTATGAAAATATAAATAAAGAAAGAAATAAAAAATAAAAAAACAAAAAAATATTAAAGCAAAA
649 ATTTATGAAAATATAAATAAAGAAAGAAATAAAAAATAAAAAAACAAAAAAATATTAAAGCAAAA
17847414 TAAAAAAATATAAAATATAAAAAGTAAG
714 TAAAAAAATATAAAATATAAAAAGTAAG
* *
17847442 AAAATAAAAAATAATGAATCAAAAATAAAAAATAAAAAAAAGAAAAAAATGAAATGAAACGAGAC
1 AAAATAAAAAATAATGAATCAAAAATAAAAAAT-AAAAAAAGACAAAAATGAAATGAAACGAGAA
*
17847507 AATAGAAAAAAAATATTTGAAAAAATACAAAAATTTGAAAAACATATAAGATATAATAAGAAAAC
65 AATAGAAAAAAAATATTTGAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAAC
17847572 AATATAAAAATTCAAGGACAAAAAATTAAAAAAGAGAAAAATTAATGCAAAATAAAAATGAAAAC
130 AATATAAAAATTCAAGGACAAAAAATTAAAAAAGAGAAAAATTAATGCAAAATAAAAATGAAAAC
17847637 AAAAAAAGAAAATGCAACAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAA
195 AAAAAAAGAAAATGCAACAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAA
17847702 ATTTGTGAAAAAATTAAGAAAAGAAAAAAAATGAAAAGACAAAAGATTTATGAAAAATAAAAAAT
260 ATTTGTGAAAAAATTAAGAAAAGAAAAAAAATGAAAAGACAAAAGATTTATGAAAAATAAAAAAT
*
17847767 CCAAGGGAGTGTGAAAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGTGAAAAAAATTAGAAA
325 CCAAGGAAGTGTGAAAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGTGAAAAAAATTAGAAA
17847832 AACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTG
390 AACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTG
17847897 TAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAAT
455 TAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAAT
*
17847962 AAGTAAAAAAAAAAGAAAAATTTAAAAGGAAAAGGAGTTAATGAAAAATTATAAAAATATAATAG
520 AAGT-AAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATATAATAG
*
17848027 AAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAATATAAAAAAATCCAAAACATTAGAAAA
584 AAAATAAGAAACAACAATAAATAAAAAAAGAAAAGAAATATAAAAAAATCCAAAACATTAGAAAA
17848092 ATTTATGAAAATATAAATAAAGAAAGAAATAAAAAATAAAAAAACAAAAAAATATTAAAGCAAAA
649 ATTTATGAAAATATAAATAAAGAAAGAAATAAAAAATAAAAAAACAAAAAAATATTAAAGCAAAA
17848157 TAAAAAAATATAAAATATAAAAAGTAAG
714 TAAAAAAATATAAAATATAAAAAGTAAG
*
17848185 AAAATAAAAAATAATGAATCAAAAATAAAAAATAAAAAAAGA-AAAAATGAAATGAAACGAGACA
1 AAAATAAAAAATAATGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAA
17848249 ATAGAAAAAAAATATTTGAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACA
66 ATAGAAAAAAAATATTTGAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACA
17848314 ATATAAAAATTCAAGGACAAAAAATTAAAAAAGAGAAAAATTAATGCAAAATAAAAATGAAAACA
131 ATATAAAAATTCAAGGACAAAAAATTAAAAAAGAGAAAAATTAATGCAAAATAAAAATGAAAACA
17848379 AAAAAAGAAAATGCAACAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAA
196 AAAAAAGAAAATGCAACAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAA
17848444 TTTGTGAAAAAATTAAGAAAAGAAAAAAAATGAAAAGACAAAAGATTTATGAAAAATAAAAAATC
261 TTTGTGAAAAAATTAAGAAAAGAAAAAAAATGAAAAGACAAAAGATTTATGAAAAATAAAAAATC
* * *
17848509 CAAGGAAGTGTG-AAAAAAAATGGAAACAAGAAATAAAAAAAATTTTGCGAAAAAAATTAGAAAA
326 CAAGGAAGTGTGAAAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGTGAAAAAAATTAGAAAA
17848573 ACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGT
391 ACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGT
17848638 AGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAATA
456 AGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAATA
17848703 AG
521 AG
17848705 CTTAAGGGAC
Statistics
Matches: 2648, Mismatches: 67, Indels: 42
0.96 0.02 0.02
Matches are distributed among these distances:
723 2 0.00
724 325 0.12
725 53 0.02
726 14 0.01
727 31 0.01
728 15 0.01
729 8 0.00
730 107 0.04
731 18 0.01
732 5 0.00
733 5 0.00
737 72 0.03
738 476 0.18
739 61 0.02
740 181 0.07
741 460 0.17
742 21 0.01
743 309 0.12
744 485 0.18
ACGTcount: A:0.68, C:0.04, G:0.11, T:0.17
Consensus pattern (741 bp):
AAAATAAAAAATAATGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAA
ATAGAAAAAAAATATTTGAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACA
ATATAAAAATTCAAGGACAAAAAATTAAAAAAGAGAAAAATTAATGCAAAATAAAAATGAAAACA
AAAAAAGAAAATGCAACAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAA
TTTGTGAAAAAATTAAGAAAAGAAAAAAAATGAAAAGACAAAAGATTTATGAAAAATAAAAAATC
CAAGGAAGTGTGAAAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGTGAAAAAAATTAGAAAA
ACAAGAAAAAATAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGT
AGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAATA
AGTAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATATAATAGAA
AATAAGAAACAACAATAAATAAAAAAAGAAAAGAAATATAAAAAAATCCAAAACATTAGAAAAAT
TTATGAAAATATAAATAAAGAAAGAAATAAAAAATAAAAAAACAAAAAAATATTAAAGCAAAATA
AAAAAATATAAAATATAAAAAGTAAG
Done.