Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 101 of 117
Found at i:17847387 original size:7 final size:7
Alignment explanation
Indices: 17847356--17847480 Score: 74
Period size: 7 Copynumber: 16.9 Consensus size: 7
17847346 AAAATTTATG
*
17847356 AAAATAT
1 AAAAAAT
*
17847363 AAATAAAG
1 AAA-AAAT
17847371 AAAGAAAT
1 AAA-AAAT
17847379 AAAAAAT
1 AAAAAAT
17847386 AAAAAA-
1 AAAAAAT
*
17847392 ACAAAA-
1 AAAAAAT
* *
17847398 AAATATT
1 AAAAAAT
17847405 AAAGCAAAAT
1 -AA--AAAAT
17847415 AAAAAAAT
1 -AAAAAAT
17847423 ATAAAATAT
1 A-AAAA-AT
*
17847432 AAAAAGT
1 AAAAAAT
17847439 AAGAAAAT
1 AA-AAAAT
17847447 AAAAAAT
1 AAAAAAT
**
17847454 AATGAAT
1 AAAAAAT
*
17847461 CAAAAAT
1 AAAAAAT
17847468 AAAAAAT
1 AAAAAAT
17847475 AAAAAA
1 AAAAAA
17847481 AAGAAAAAAA
Statistics
Matches: 92, Mismatches: 18, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
6 8 0.09
7 43 0.47
8 32 0.35
9 3 0.03
10 6 0.07
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (7 bp):
AAAAAAT
Found at i:17847437 original size:29 final size:29
Alignment explanation
Indices: 17847381--17847435 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
17847371 AAAGAAATAA
*
17847381 AAAATAAAAAAACAAAAAAATATTAAAGC
1 AAAATAAAAAAACAAAAAAATATAAAAGC
* *
17847410 AAAATAAAAAAA-TATAAAATATAAAA
1 AAAATAAAAAAACAAAAAAATATAAAA
17847436 AGTAAGAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 11 0.48
29 12 0.52
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.16
Consensus pattern (29 bp):
AAAATAAAAAAACAAAAAAATATAAAAGC
Found at i:17847642 original size:19 final size:18
Alignment explanation
Indices: 17847626--17847661 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
17847616 ATGCAAAATA
17847626 AAAATGAAAACAAAAAAAG
1 AAAATG-AAACAAAAAAAG
*
17847645 AAAATGCAACAAAAAAA
1 AAAATGAAACAAAAAAA
17847662 ACTATAAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.78, C:0.08, G:0.08, T:0.06
Consensus pattern (18 bp):
AAAATGAAACAAAAAAAG
Found at i:17848180 original size:29 final size:29
Alignment explanation
Indices: 17848124--17848178 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
17848114 AAAGAAATAA
*
17848124 AAAATAAAAAAACAAAAAAATATTAAAGC
1 AAAATAAAAAAACAAAAAAATATAAAAGC
* *
17848153 AAAATAAAAAAA-TATAAAATATAAAA
1 AAAATAAAAAAACAAAAAAATATAAAA
17848179 AGTAAGAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 11 0.48
29 12 0.52
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.16
Consensus pattern (29 bp):
AAAATAAAAAAACAAAAAAATATAAAAGC
Found at i:17848236 original size:8 final size:7
Alignment explanation
Indices: 17848099--17848223 Score: 74
Period size: 7 Copynumber: 16.9 Consensus size: 7
17848089 AAAATTTATG
*
17848099 AAAATAT
1 AAAAAAT
*
17848106 AAATAAAG
1 AAA-AAAT
17848114 AAAGAAAT
1 AAA-AAAT
17848122 AAAAAAT
1 AAAAAAT
17848129 AAAAAA-
1 AAAAAAT
*
17848135 ACAAAA-
1 AAAAAAT
* *
17848141 AAATATT
1 AAAAAAT
17848148 AAAGCAAAAT
1 -AA--AAAAT
17848158 AAAAAAAT
1 -AAAAAAT
17848166 ATAAAATAT
1 A-AAAA-AT
*
17848175 AAAAAGT
1 AAAAAAT
17848182 AAGAAAAT
1 AA-AAAAT
17848190 AAAAAAT
1 AAAAAAT
**
17848197 AATGAAT
1 AAAAAAT
*
17848204 CAAAAAT
1 AAAAAAT
17848211 AAAAAAT
1 AAAAAAT
17848218 AAAAAA
1 AAAAAA
17848224 AGAAAAAATG
Statistics
Matches: 92, Mismatches: 18, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
6 8 0.09
7 43 0.47
8 32 0.35
9 3 0.03
10 6 0.07
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (7 bp):
AAAAAAT
Found at i:17848383 original size:19 final size:18
Alignment explanation
Indices: 17848367--17848402 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
17848357 ATGCAAAATA
17848367 AAAATGAAAACAAAAAAAG
1 AAAATG-AAACAAAAAAAG
*
17848386 AAAATGCAACAAAAAAA
1 AAAATGAAACAAAAAAA
17848403 ACTATAAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.78, C:0.08, G:0.08, T:0.06
Consensus pattern (18 bp):
AAAATGAAACAAAAAAAG
Found at i:17849078 original size:26 final size:26
Alignment explanation
Indices: 17849038--17849093 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
17849028 TGGGTTGACT
*
17849038 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
*
17849064 TAAGCATATGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
17849090 TAAG
1 TAAG
17849094 ATCGGATCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:17849969 original size:26 final size:26
Alignment explanation
Indices: 17849940--17849995 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
17849930 TGGGTTGACT
* *
17849940 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
17849966 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
17849992 TAAG
1 TAAG
17849996 ATCAGATAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:17850449 original size:902 final size:899
Alignment explanation
Indices: 17848704--17854041 Score: 7535
Period size: 902 Copynumber: 5.9 Consensus size: 899
17848694 GAAAAAATAA
* **
17848704 GCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
* * *
17848769 ATGTGCCTAAACCCACCTACCACCCTACCTATCCACGGCTTGCGCATCCCGTTTCTCTGGCCGGC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* *
17848834 GTAGTGCTCGCCCACCCG-CCCGCTCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT
131 GTAGTCCT-GCCCGCCCGCCCCGCTCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT
* * * *
17848898 CCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGTAGGATCGACAGCATGCAGAGGGGGAC
195 -CCA-TCTAAGATCGGACC-GAACAAGGGTTGCGGTAGCAGGATCGACAGCATGCAGAGGGGGAC
* * *
17848963 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGGGCGCCTGCACGCTCGTTTCG
257 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
*
17849028 TGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAA
322 TGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCCAGTCTAA
* * *
17849093 GATCGGATCGGACCGCGTGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
386 GATCAGATCGGACCGAGTGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGGCGCATTT
** * * *
17849158 TTCTTCATCGGGGCACCATCGTCGGAGCATCGTAGGAGAACCTGA-CTGGCGGCATTAGGGTTTC
451 TTCTTCGCCGGGGCACCATCATCGGAGCATCGTAGGAGAACCTGATC-GGCGGCATTGGGGTTCC
* * *
17849222 GACGATC-GAGGGGTCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTAGTACTTGGCCCTTA
515 GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTA
* * **
17849286 TATTGGCCCCCTATCCCTCATTAAACCTTGAGAACTTGCACCCCCTTAAAGAGCATTTGAGATTT
580 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
17849351 TACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
645 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
17849416 AAATCTTGTTCACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAAATACAAGGAT
710 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCC-AACAAAAATACAAGGAT
* * * * *
17849481 CACGTCTACCAAGTTTGGGGCCAAAACTCCTACCGAAAAATTTTTTAAAAATCCCGCACCGTAAA
774 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAA
*
17849546 AAGTTTTAAAAATTGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC-TGAAG
839 AAGTTTTAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
17849606 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
* *
17849671 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCAGC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
*
17849736 GTAGTACCTGCCCGCCCGTCCGCCTGCTCGCTTGTTTCGTCAGTTGGCTTAGGCATACGGAGTTC
131 GTAGT-CCTGCCCGCCCG-CC-CC-GCTCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTC
* * * *
17849801 ATT-C-TCTAAGATCGGACCGGATCAAGGGTTGTGGCAGCAGGATCAACAGCATGCAGAGGGGGA
192 ATTCCATCTAAGATCGGACC-GAACAAGGGTTGCGGTAGCAGGATCGACAGCATGCAGAGGGGGA
* * ** *
17849864 CCCGGTCGATCCCCGGCTTGCGCATCCCGTCCCTCTGGCCGGCTGAGCGCTTGTACGCTCGTTTC
256 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
*
17849929 GTGGGTTGACTTAAGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTA
321 GTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTA
* * * * * *
17849994 AGATCAGATAGGACAGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGATGGCGTATT
385 AGATCAGATCGGACCGAGTGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGGCGCATT
* * * *
17850059 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTAGGAGAACCTGA-CTGGCGGCATTGAGGTTT
450 TTTCTTCGCCGGGGCACCATCATCGGAGCATCGTAGGAGAACCTGATC-GGCGGCATTGGGGTTC
17850123 CGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCT
514 CGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCT
*
17850188 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGAT
578 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
17850253 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCA
643 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
17850317 CAAAATCTTGTACACATCGACTTTTTAGCTGAATTGTTTTGTGCACGCCAACAAAAATACAAGGA
708 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGA
* * * *
17850382 TCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACTGTAA
773 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAA
* *
17850447 AAAGTTTTGAAAATCGTAAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
838 AAAGTTTTAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
17850509 GCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
* *
17850574 ATGTACCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * * * * *
17850639 ATAGTGCCCGCCCTCCTGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTC
131 GTAGT-CCTGCCCGCCCGCCC-CGC-T-CGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTC
* * * * * *
17850704 ATTCCCAGTCTAAGATCGGTCCAAACTAAGGGTTGAGGTAGCAGGATCGGCAGCACGCAGAGGAG
192 ATT-CCA-TCTAAGATCGGACCGAAC-AAGGGTTGCGGTAGCAGGATCGACAGCATGCAGAGGGG
* * * * * *
17850769 GACCCGACCGATCCTCGGCTTGCTCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGCACGATCGTT
254 GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
*
17850834 TCGTGGGTTGACTTAGGCATACGGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
319 TCGTGGGTTGACTTAAGCATACGG-AGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGT
* * * * * *
17850899 CAAAGATCAGATCGGACCGCGTGTTGCGGCAGCACATGCTAGGCTCGTGCTTGTGCTGGTGTCGC
382 CTAAGATCAGATCGGACCGAGTGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGGCGC
* * *** *
17850964 ATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACTTGATCGGCGGCATTGGGGT
447 ATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGTAGGAGAACCTGATCGGCGGCATTGGGGT
** * *
17851029 TCCGGTGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCTATGGGTGCTGGTACTTGGCCC
512 TCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCC
*
17851094 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAGGAGCATTTGAGA
577 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
17851159 TTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTC
642 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
17851224 ACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGG
707 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGG
* *
17851289 ATCACGTCTACCAAGTTT-GTGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACTGTA
772 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTA
*** *
17851353 AAAAGTTTTAAAAATAAAAAAAAATAGAAAACGAGCCGTCTTGCCATGAAACTTCACGTGAAG
837 AAAAGTTTTAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
17851416 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
*
17851481 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCCGGC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * *
17851546 GTAG---TGCCCGCCCG-CCCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTC
131 GTAGTCCTGCCCGCCCGCCCCGCTCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT-
* * * * * *
17851607 CCAGTCTAAGATCAGACCGAGCCGAGGGTTGCGGCAGCAGGATCGAGAGC-T-CATAGAGGTGGA
195 CCA-TCTAAGATCGGACCGA-ACAAGGGTTGCGGTAGCAGGATCGACAGCATGC--AGAGGGGGA
* * * * *
17851670 CCCGGTCGATCCCCGGCTTGATGCATCCCGCCCCTCTGGCCGACTGAGCCCCCGCATGCTCGTTT
256 CCCGATCGATCCCCGGCTTG-CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* *
17851735 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCAAAG-AT-C-AG---A----C---C--
320 CGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTA
* * * * *
17851785 -G----GATC-G--CGA--GTTGCGGTAGCACATGCTGGGCTCGTGCTTGTGCTGGTGCCTCATT
385 AGATCAGATCGGACCGAGTGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGGCGCATT
* * * * *
17851840 TTTCTTCACCGGGGCACCATCACCGGAGCATCACT-GGAGAACCTGATCGACGACATTGGGGTTC
450 TTTCTTCGCCGGGGCACCATCATCGGAGCATC-GTAGGAGAACCTGATCGGCGGCATTGGGGTTC
* *
17851904 CGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
514 CGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTT
*
17851969 ATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
579 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
17852034 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCT-AGAATGGGGACACTTTTTTCAAATGGTCA
644 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCA
* * *
17852098 CAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGA
708 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * * * *
17852163 TCATGTCTACTAAGTATGGGGCCAAAAC-CCATCCAAAAAAATTTTAAAAAATCTCAAATCGTAA
773 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAA
* * *
17852227 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTGCACGTGAAG
838 AAAGTTTTAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
17852289 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
* *
17852354 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCATCCCGTCTCTCTGGCCGGC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * * *
17852419 GTAGTGCCTGCCGGCCCG-TCCGCCCGTTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
131 GTAGT-CCTGCCCGCCCGCCCCGCTCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT
* * * **
17852483 CCCAATCTAAGATCGGATCGGATCAAGGGTTGCGGTAGCAGGATCAACAGCATGCAGATAGGGAC
195 -CC-ATCTAAGATCGGA-CCGAACAAGGGTTGCGGTAGCAGGATCGACAGCATGCAGAGGGGGAC
* *
17852548 CCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCG
257 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
*
17852613 TGGGTTGACTTAAGCATACGGAGTTCATTCCCACTCTAAGCATACGAAGTTCATTCCCAGTCTAA
322 TGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCCAGTCTAA
* * * * *
17852678 GATCAGACCAGACCGAG-GATTACGGCAGCACATGCTGGGCTCGGGCATCTGCTGGTGAG-GTAT
386 GATCAGATCGGACCGAGTG-TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-GCGCAT
* * * *
17852741 TTTTCTTCGCCAGGGCACCATCGTTGGAGCATCGTAAGAGAACCTGA-CTGGCGGCATTGGGGTT
449 TTTTCTTCGCCGGGGCACCATCATCGGAGCATCGTAGGAGAACCTGATC-GGCGGCATTGGGGTT
* ** *
17852805 TCGACGATCGGGGGATCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGACCCT
513 CCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCT
* * *
17852870 TATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCGCACCCCCTTAAAAAGCATTTGAGAT
578 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
17852935 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
643 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
17853000 CAAAATCTTGGACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAGAAATACAAGGA
708 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGA
* * *
17853065 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTACCGAAAAAATTTTAAAAAATCCCGCACCGTAA
773 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAA
* * *
17853130 AAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAG
838 AAAGTTTTAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
17853192 GCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAACGGCATTGGTACGTAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
* *
17853257 ATGTACCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* *
17853322 GTAG---TGCCCGCCCG-CCCG-TCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
131 GTAGTCCTGCCCGCCCGCCCCGCT-CGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * *
17853382 CTCAGTCTAAGATTGGTCCAAACTAAGGGTTGAGGTAGCAGGATCGGCAGCACGTAGA-GGGGAC
195 C-CA-TCTAAGATCGGACCGAAC-AAGGGTTGCGGTAGCAGGATCGACAGCATGCAGAGGGGGAC
* * * * * *
17853446 CCGGTCGATCCTCGGCTTGCTCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGATTGTTTCG
257 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* *
17853511 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCAAA
322 TGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAA
* * * * * ** * * *
17853576 GATCGGACCGGACCGCGTGTTGCGACAGCACATGTTGGGCTCATGCTTGTGCTGGTGCCACATTT
386 GATCAGATCGGACCGAGTGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGGCGCATTT
*** *
17853641 TTCTTCGCCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGATCGACGGCATTGGGGTTCCG
451 TTCTTCGCCGGGGCACCATCATCGGAGCATCGTAGGAGAACCTGATCGGCGGCATTGGGGTTCCG
** * *
17853706 GTGATCGGGGGGGCCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
516 ACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTAT
* * * *
17853771 ATTGGCCCCGTATCCCTCATCAAACCTTGAGAACTCACATCCCCTTAAGGAGCATTTGAGATTTT
581 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
17853836 ATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
646 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
17853901 AATCTTGTACACTTCGAGTTTTTAGCTGAATAT-TTTTGTGCATGCCAACAAAAATACAAGGATC
711 AATCTTGTACACTTCGAGTTTTTAGCTGAAT-TGTTTTGTGCATGCCAACAAAAATACAAGGATC
* *
17853965 ACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAA
775 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* *
17854030 TGTTTCAAAAAT
840 AGTTTTAAAAAT
17854042 ATGAAGATGT
Statistics
Matches: 3983, Mismatches: 378, Indels: 154
0.88 0.08 0.03
Matches are distributed among these distances:
872 1 0.00
873 575 0.14
874 9 0.00
875 2 0.00
876 78 0.02
877 114 0.03
878 10 0.00
879 1 0.00
880 2 0.00
882 1 0.00
883 1 0.00
885 1 0.00
887 1 0.00
888 1 0.00
890 1 0.00
892 1 0.00
893 1 0.00
895 2 0.00
897 5 0.00
898 543 0.14
899 213 0.05
900 63 0.02
901 7 0.00
902 918 0.23
903 477 0.12
904 149 0.04
905 3 0.00
906 44 0.01
907 498 0.13
908 260 0.07
909 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
GTAGTCCTGCCCGCCCGCCCCGCTCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
CATCTAAGATCGGACCGAACAAGGGTTGCGGTAGCAGGATCGACAGCATGCAGAGGGGGACCCGA
TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCA
GATCGGACCGAGTGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGGCGCATTTTTCTT
CGCCGGGGCACCATCATCGGAGCATCGTAGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGAT
CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGG
CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTT
AAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
Found at i:17852663 original size:26 final size:26
Alignment explanation
Indices: 17852623--17852678 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
17852613 TGGGTTGACT
*
17852623 TAAGCATACGGAGTTCATTCCCACTC
1 TAAGCATACGAAGTTCATTCCCACTC
*
17852649 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCACTC
17852675 TAAG
1 TAAG
17852679 ATCAGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCACTC
Found at i:17854356 original size:26 final size:26
Alignment explanation
Indices: 17854320--17854372 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17854310 GTTGACTTAG
17854320 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
17854346 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17854372 G
1 G
17854373 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17855237 original size:26 final size:26
Alignment explanation
Indices: 17855206--17855284 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
17855196 GTTGACTTAG
17855206 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17855232 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
17855258 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17855284 G
1 G
17855285 ATCGGACCGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17857077 original size:26 final size:26
Alignment explanation
Indices: 17857002--17857080 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
17856992 GTTGACTTAG
* *
17857002 GCATACGAAGTTCATTCCCAGTCCAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*** *
17857028 GCATGTAGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17857054 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17857080 G
1 G
17857081 ATCAGACCAG
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17858779 original size:26 final size:26
Alignment explanation
Indices: 17858743--17858795 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17858733 GTTGACTTAG
17858743 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
* *
17858769 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
17858795 G
1 G
17858796 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:17859660 original size:26 final size:26
Alignment explanation
Indices: 17859631--17859683 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17859621 GTTAACTTAG
*
17859631 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17859657 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17859683 G
1 G
17859684 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17861830 original size:26 final size:26
Alignment explanation
Indices: 17861780--17861830 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17861770 GTTGACTTAG
**
17861780 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17861806 GCATGCGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATTCCCAATCTA
17861831 TGATTGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17862083 original size:395 final size:398
Alignment explanation
Indices: 17861342--17862136 Score: 1129
Period size: 395 Copynumber: 2.0 Consensus size: 398
17861332 GTCGGCTGAA
* *
17861342 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCACTCTAAGCATATG
1 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCACTCTAAGCATACG
* ** * *
17861407 AAGTTCATTCCCAGTCTAAGATCGACCAGACCGAGGGTTGTGACGGCACATACTGGGCTCGTGCA
66 AAGTTCATTCCCAATCTAAGATCGACCAGACCGAGGGTTCCGACAGCACATACTAGGCTCGTGCA
* *
17861472 CGTGCTGGTGCCACATTTTTCATCGTCGGGGCACCATCGCCGGAGCATCGTCGGGGAACCTGATC
131 CGTGCTGGTGCCACATTTTTCATCGTCGGGGCACCATCACCGGAGCA---TC---G--CCTGACC
* * *
17861537 GGTGGACTTGGGGTTCTGACGATCGGGGGGCCCGAGGGGGTGTGCGCACATGATGTGCGATGGGT
188 GGCGGACTTGGGGTTCCGACGATCGGGGGGCCCGAGGGGGTGTGCGCACATGATGTGCGATAGGT
* *
17861602 GCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
253 GCTAGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTT
*
17861667 AAAGAGCATTTTAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
318 AAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
17861732 TTTTTTCAAACCCGCT
383 TTTTTTCAAACCCGCT
* * *
17861748 CGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-CGTCTAAGCATGC
1 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCAC-TCTAAGCATAC
* * * *
17861812 GGAGTTCATTCCCAATCTATGATTGGACCAGACCGAGGGTTCCGACAGCACATGCTAGGCTCAG-
65 GAAGTTCATTCCCAATCTAAGA-TCGACCAGACCGAGGGTTCCGACAGCACATACTAGGCTC-GT
* * *
17861876 GCATGTGCTGGTG-CAGTATTTTTCTTCGTCGGGGCACCATCACCGGAG-A-C-CCTGACCGGCG
128 GCACGTGCTGGTGCCA-CATTTTTCATCGTCGGGGCACCATCACCGGAGCATCGCCTGACCGGCG
* * * *
17861937 G-CATTGGTGTTCCGGCGATCGGGGGGCCGGA-GGGGTGTGCGCACATGATGTGCGCTAGGTGCT
192 GAC-TTGGGGTTCCGACGATCGGGGGGCCCGAGGGGGTGTGCGCACATGATGTGCGATAGGTGCT
*
17862000 GGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAAA
256 AGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAAA
* *
17862065 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTT
321 GAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
17862130 TTTCAAA
386 TTTCAAA
17862137 TGGTCACAAA
Statistics
Matches: 352, Mismatches: 32, Indels: 21
0.87 0.08 0.05
Matches are distributed among these distances:
395 162 0.46
396 34 0.10
402 1 0.00
405 1 0.00
406 79 0.22
407 74 0.21
408 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.26
Consensus pattern (398 bp):
CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCACTCTAAGCATACG
AAGTTCATTCCCAATCTAAGATCGACCAGACCGAGGGTTCCGACAGCACATACTAGGCTCGTGCA
CGTGCTGGTGCCACATTTTTCATCGTCGGGGCACCATCACCGGAGCATCGCCTGACCGGCGGACT
TGGGGTTCCGACGATCGGGGGGCCCGAGGGGGTGTGCGCACATGATGTGCGATAGGTGCTAGTAC
GTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AACCCGCT
Found at i:17862704 original size:26 final size:26
Alignment explanation
Indices: 17862668--17862746 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
17862658 GTTGAGTTAG
17862668 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17862694 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
17862720 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17862746 G
1 G
17862747 ATCAGACCGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17863620 original size:26 final size:26
Alignment explanation
Indices: 17863584--17863636 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17863574 GTTAACTTAG
* *
17863584 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17863610 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17863636 G
1 G
17863637 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17864477 original size:893 final size:890
Alignment explanation
Indices: 17861748--17879968 Score: 8523
Period size: 903 Copynumber: 19.9 Consensus size: 890
17861738 CAAACCCGCT
* * * *
17861748 CGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCCGTCTAAGCATGCG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* ** * * * * *
17861813 GAGTTCATTCCCAATCTATGATTGGACCAGACCGAGGGTTCCGACAGCACATGCTAGGCTCAGGC
66 GAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * *
17861878 ATGTGCTGGTGCAGTATTTTTCTTCGTCGGGGCACCATC-ACCGGAGACCCTGACCGGCGGCATT
131 ATGTGCTGGTGCCGTATTTTTCTTCG-CGGGGCACCATCGTCCGGAGAACCTGACCGACGGCATT
* * * *
17861942 -GGTGTTCCGGCGATCGGGG-GGCCGGAGGGGTGTGCGCACATGATGTGCGCTAGGTGCTGGTAC
195 GGGT-TTCCGACGATCGGGGAGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
17862005 GTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAAAGAGCA
259 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
17862070 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCA
324 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
17862135 AATGGTCACAAAATCTTGTACAGTTCGAGATTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAA
389 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * * *
17862200 TACAAGGATCACGTGTACCAAGTTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAAATCCCA
454 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCG
** * * * *
17862265 AACCACAAAAAGATTCTAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
519 AACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
17862330 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTCGCATGCAGAAATA
584 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * *
17862395 TGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGTATCCTGTCTCTCTGG
649 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * *
17862460 CCGACGTATTGCCCGCCCGCCTACCTG---CTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTC
714 CCGGCGTAGTGCCCGCCCG-CTGCCCGCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* ** * * * *
17862522 ATTCCCAATCTAAGATCAGACTGGATCGAGGGTTGCGGCAGCAAGATCAGCAGCACACTGAGGGG
778 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGG
* * *
17862587 GACGCGA-TCGATCCCCGGCTTGTGCATCT-CACCCTTCTAGCCGGTTGAG
843 GACCCGACT-GATCCCCGGCTTGCGCATCTGC-CCC-TCTGGCCGGTTGAG
* * *
17862636 CACTCGCACGCTCGTTTCGTGGGTTGAGTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
*
17862701 GAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGACGGT
66 GAGTTCA-T-----TC----C----------CA-----A-TCTAAGATCAGACCGGACCGAGGGT
* * * *
17862766 TGCGGTAGCACATGCTAGTCTCGGGCATGTGCTGGCGCCGTATTTTTCTTCGCGGGGGCACCATC
105 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGC-GGGGCACCATC
* * * * * * * * *
17862831 -CCCGGAGAACCTGACAGGCGGCATTGAGTTTCTGGCGATCGGGGACGCC-AGGGGGTGAGCGCA
169 GTCCGGAGAACCTGACCGACGGCATTGGGTTTCCGACGATCGGGGAGGCCGGGGGGGTGTGCGCA
* * * *
17862894 CATGATGTGTGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCA
234 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * *
17862959 AGCACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGT
299 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
17863024 GTCTGAAATGGTGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGA
364 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
17863089 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC-AGCCAAGTTTGGGGTCAAAACTCC
429 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCC
* * *
17863153 TTTCGAAAAAA-TTAAAAAAATCCCGAACC-GAAAAAGTTTCAAAAATCATGAAAAAGAGAAAAC
493 TTTCGAAAAAATTTTAAAAAATCCCGAACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
17863216 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
558 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * **
17863281 AAAAATGGCATTGGAATGTAGAAATATGAACATGTGCCTAAACCCACCTACCACAATATCGATCC
623 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * *
17863346 ACGGCTTGCGCATCCCGTCTTTCTGGCTGACGTAGAGCTCGCCTGCCCG-TTCACCG-C-CTCGT
688 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT--AG-T-GCCCGCCCGCTGC-CCGCCACTCGT
* * ** *
17863408 TTCGTCGGTTAGCTTAGGCATATGGAGTTCATTCATAGTCTAAGATCAGACCAGACCGAGGGTTA
748 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
* * * * ** * * * *
17863473 CGGTAACAAGATCGGTAGCATGCAGAGGGGGACCCAACCGATCCTCGGCTTGCGCATCTCGCCCT
813 CGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCT-GCCCC
* * *
17863538 TCTGGCTGGCTGAA
877 TCTGGCCGGTTGAG
* * * *
17863552 CGCCCGCACGCTCGTTTCGTGAGTTAACTTAGGCATACGGAGTTCTTTCCCAGTCTAAGCATACA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
17863617 GAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
17863682 ATGTGATGGTGCCGTATTTTTCTTCGCGGGGGCACCATC-TCCGGAGAACCTGACTGACGGCATT
131 ATGTGCTGGTGCCGTATTTTTCTTCGC-GGGGCACCATCGTCCGGAGAACCTGACCGACGGCATT
* *
17863746 GGGTTTCCGACGATCGGGGACGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTATT
195 GGGTTTCCGACGATCGGGGAGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * * *
17863811 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTGGAGCACTCACACCCCTTTAAAGAGCAT
260 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
17863876 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
325 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
17863941 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
390 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
* * * **
17864006 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTGCGAAAAAATTTCAAAAAATCTTGA
455 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGA
* *
17864071 ACTGGAAAACA-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACG
520 ACCGGAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
17864135 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
584 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
*
17864200 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGG
649 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * *
17864265 CCAGTGTAGTGCCCGCCCGTCTGCCCGCCAACTCGTTTTGTCAGCTGGCTTAGGCATACAGAGTT
714 CCGGCGTAGTGCCCGCCCG-CTGCCCGCC-ACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * **
17864330 CATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCGGGATCGGCAGCACGTAGAGGG
777 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGG
* * * * * *
17864395 GGACCTGACTGATCCTCGGCTTACGCATGCTGCCCCTTTGGCCGGCTGAA
842 GGACCCGACTGATCCCCGGCTTGCGCAT-CTGCCCCTCTGGCCGGTTGAG
*
17864445 CGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
17864510 GAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGAGC
66 GAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
17864575 ATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGAC
131 ATGTGCTGGTGCCGTATTTTTCTTCG-CGGGGCACCAT---C---G--TC--CGGAGAACCTGAC
* * * *
17864640 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGTGCACATGATGTGCAATGGG
185 CGACGGCATTGGGTTTCCGACGATCGGGGAGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
*
17864704 TGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
250 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
17864769 TTAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGACA
315 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
17864834 CTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGC
380 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * **
17864899 CAACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCTTTTAAAAAAATTTTAA
445 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAA
* * * * *
17864964 ACAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAAATAGAAAACGAGTCATCTTGCCATG
510 AAAATCCCGAACCGGAAAAAGTTTCAAAAATCGTG-AAAAATAGAAAACGAGTCGTCTTGCCATG
*
17865029 AAACTTCACGTGACGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
574 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*** ** * *
17865094 CATAGAAATATGAAGATGTAACTAAACCCACTTACCACACTATCGATCCACGGCTTGCGCATCCC
639 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
** * * **
17865159 GTCTCTCTGGCCGGCGTAGTGCATG--C-CTGCCCGCCCGCTCATTTAATCGGTTGGCTTAGGCA
704 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTGCCCG-CCACTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
17865221 TACGAAGTTCATTCCTAGTCTAAGATCAGA-CTGAACCGAGGGTTCCGGCAGCAGGATCGGAAGC
768 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * ** * * *
17865285 ACGCCGAGGGGGACCTGGCTGATCCCCAGCTTGCGCATCCAACCCGTCTGACCGATTGAG
832 ACACAGAGGGGGACCCGACTGATCCCCGGCTTGCGCAT-CTGCCCCTCTGGCCGGTTGAG
* * *
17865345 CGCCCGAACGCTCGTTT--T--G-TGAGTT--G--T-C-----T--TT----G-----GCATATG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
*
17865384 GAGTTCATTCCCAATCTAAGATC-GAACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGG
66 GAGTTCATTCCCAATCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * * *
17865448 CATGTGCTGGTGCCGTATTTTTCTTTGTCGGGGTACCATCGT-CAGAAAACTTGACCGACGGTAT
130 CATGTGCTGGTGCCGTATTTTTCTTCG-CGGGGCACCATCGTCCGGAGAACCTGACCGACGGCAT
* * * *
17865512 TAGGG-TTCCGACGATCGGGG-GAGTCGGGGGGGCTGTGGGCACATAATGTGTGATGGGTGCTGG
194 T-GGGTTTCCGACGATCGGGGAG-GCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
17865575 TGCTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGA
256 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
17865640 GCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGCCTGAAATAGGGACACTTTTT
321 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
17865705 TCAAATGGTCA-ACAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTACATGCCAAAA
386 TCAAATGGTCACA-AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAA
* *
17865769 AAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAA
449 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAA
* * * *
17865834 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACC
514 TCCCGAACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
17865899 TCACGTGAAGGCGTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGCAG
579 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* *
17865964 AAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTGCGCATCCTGTCAC
644 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
** * *
17866028 TCTGGCCGATGTAGTGCCCG-CC-C-G--C-CAACTCGTTTCGTCGGTTGGCTTAGGCATATGGA
709 TCTGGCCGGCGTAGTGCCCGCCCGCTGCCCGCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * **
17866087 GTTCATTCCCAATCTAAGAAT-GGATCAGACCGAGGGTTACGACAGCAGGATCGATAGCACACAG
774 GTTCATTCCCAGTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAG
* * ** *
17866151 AGGGGGACCCGACCGATCCCTC-GCGTGCGCATCCCACCCCTCTGGCCGGCTGAG
838 AGGGGGACCCGACTGATCCC-CGGCTTGCGCAT-CTGCCCCTCTGGCCGGTTGAG
* * * *
17866205 CGCCAGCACGCTCATTTCGTAGGTTGATTTAGGCATACGGAGTTCATTCCCAGTC----C--A--
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* *
17866262 -AG----------ATC--AGAT-----CGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCAGGC
66 GAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * *
17866309 ATCTGCTGATGTCGTATTTTTCTTCACCGGGGCACCATCGT-CGGAGAACTTGACCGACGGTATT
131 ATGTGCTGGTGCCGTATTTTTCTTC-GCGGGGCACCATCGTCCGGAGAACCTGACCGACGGCATT
* * * * * * * *
17866373 GGGGTTCTGACGATCGGGGGGGTCGGGAGGGCTGTGCACACGTAATGTGCGATGGGTGCTGGTAC
195 GGGTTTCCGACGATCGGGGAGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
17866438 ATGGCCCTCATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
259 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
17866503 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCA
324 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
17866568 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATGCCAACAAAAA
389 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* *
17866633 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCTG
454 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCG
*
17866698 AACC-------G--T-AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGCAACTTCACG
519 AACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
17866753 TGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
584 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* *
17866818 TGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGAG-TTGCGCATCCCATCTCTCTG
649 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG-GCTTGCGCATCCCGTCTCTCTG
17866882 GCCGGCGTAGTGCCCG-CC-C-G--C-CCACTCGATTT-GTCGGTTGGCTTAGGCATACGGAGTT
713 GCCGGCGTAGTGCCCGCCCGCTGCCCGCCACTCG-TTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * *
17866940 CATTCCCAGTCTAAGA-CGGACCGGACCGAGGGTTGTGGCAACAGGATTGGCAGCACACAGAGGG
777 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGG
* * *
17867004 GGACCCGA-TCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGTTAAA
842 GGACCCGACT-GATCCCCGGCTTGCGCAT-CTGCCCCTCTGGCCGGTTGAG
* * *
17867054 CGCTCGCACTCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
17867119 GAGTTTATTCCCAATCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** * * * ** *
17867184 ATGTGCTGGTGCCACATTTTTCTTCTTCGAGGCACCATCG-CCGGAGAACCTGACAGGTGGTATT
131 ATGTGCTGGTGCCGTATTTTTCTTC-GCGGGGCACCATCGTCCGGAGAACCTGACCGACGGCATT
* * * *
17867248 AGGG-TTGCGACGATCGGGGGGGCCGTGGGGGTGTGCGCACATGGTGTGCGATGGGTGCTGGTAC
195 -GGGTTTCCGACGATCGGGGAGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
17867312 TTGGCCCTTAGATTTGCCCCCTATCCCTCATCAAACCTC-AGGAAATCACACCCCCTTAAAGAGC
259 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGC
* *
17867376 ATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
323 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
17867441 AAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAATAAAA
388 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* *
17867506 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CTTTCCGAAGAAATTTTAAAAAAATC
453 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CGAAAAAATTTT-AAAAAATC
* *
17867570 CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
516 CCGAACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
17867635 ACGTTAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
581 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * * *
17867700 ATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACAGTTTGTGCATCCCGTCTCTC
646 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
17867765 TGGCCGGCGTAGTGCCTGCCCGCCCGCCTGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
711 TGGCCGGCGTAGTGCCCGCCCG-CTGCCCGCC-ACTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * * * *
17867830 GTTCATTCCCAGTCTAAGATTAGACCGGATCGATGGTTGCAGCAGTAAGATCGGTAGCACACCGA
774 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGA
* * * *
17867895 AGGGGATCCGA-TCGATCCCCGTCTTGCGCATCTCGGCCCTCTGGCCGGTTGAG
839 GGGGGACCCGACT-GATCCCCGGCTTGCGCATCT-GCCCCTCTGGCCGGTTGAG
* * *
17867948 CACCCACACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
** * * * * * *
17868013 GAGTTCATTCCCAGCCTAAGATCGGACCAGACTGAGGGTTGCAGCAGAACATGCTGGGCTCGGCC
66 GAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * *
17868078 ATGAGCTGGTGTCGCATTTCTCTTCGCGGGGCATCATCGT-CGGAGCATCACCGGAGAACCTGAT
131 ATGTGCTGGTGCCGTATTTTTCTTCGCGGGGCACCATCGTCCGGAG-A--ACC--TG-ACC-GA-
** *
17868142 CGGCAGCATTAGGGTTT-CGGTGATCTGGGG-GGCCGAGGGGGGTGTGTGCGCACATGATGTGTG
188 C-G--GCATT-GGGTTTCCGACGATC-GGGGAGGCC--GGGGGG-GTGTGCGCACATGATGTGCG
17868205 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
245 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
** *
17868270 TGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGG
310 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
** ** * * ** * * * **
17868335 AAACAC-TTTGCCACATTTTGCTTTGTCGGGGCACCATCGTCGAAGCATCGTCTCAGGACCTGAT
375 GGACACTTTTTTCA-A--ATG----GTC---ACAAAATC-TTGTA-CA-C-T-TC--GA-GTTTT
** * * **** * * ******* *** * * * * * **
17868399 CGGCGGCATTGGGGT-TCCGATGATC-GGGGGGGTAGGGGGTGTGTGCACTTGATGTGCGATGGG
422 TAGCTGAATTTTTTTGTGC-ATG-CCAAAAAAAATA-CAAG-G-AT-CAC--G-TCTACCAAGTT
* **** * * ***** * * ** ** ****
17868462 TGCTGGGACTTGGCTCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTC--ACACCCC
478 TG--GGGCCAAAACTC--CT-TTCG-AAAAAAT---T-TTAAAAAATCCCGAAC-CGGA-AAAAG
* * * * * *** * *** * * * * * *
17868525 CTT-AGAGAGCATTTGAGATTTTACA-G-GT-TTGC-TGCCA-GTAGC--CA-TTAAAGTGTCTC
531 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT-CTTGCCATGAAACTTCACGTGAAG-G-CT-
* * * * * * *** ** *
17868581 AAATGGGGA-CACTTTTTTCAAATGGT-C-A-CGA-AATCTTGTGCACTTCGAGTTTTTAGCTGA
592 TAA--GGGACCA-TTGTAT-GAAT-TTACAAGCCATAAAAATG-GCA-TT-G-G--CAT-GCAGA
* * *** ** ** * *** * * * * ***
17868641 ATTTTTTTG-TGCATGCC--AACAAAAATACAAGGATCA-CG-TCTACCAAGTTTGGGGCTAAAA
645 AATATGAAGATG--TGCCTAAACCCACCTACCACCCT-ATCGATCCA-C-GGCTT-GCGC-ATCC
* ***** * ********* * * * * * **** *
17868701 C-AC-CT-T--CCAAAAAAATTTTAAAAAATCTTGAACCACAAAAT-GTTTAGAAAATCATGAAA
703 CGTCTCTCTGGCC-GGCGTAGTGCCCGCCCGC-TG-CCCGC-CACTCGTTTCGTCGGT--TG--G
** * * * * * * ** * *
17868760 AATA-GAAAAC-AAGTCGTC-TTGCCA-T-GAAAATTC--ACGTGA---AGGCTTAAGCGACCAT
760 CTTAGGCATACGGAGT--TCATTCCCAGTCTAAGA-TCAGACCAGACCGAGGGTT--GCG-GCA-
* * *** * * ** * *** ***** * *
17868815 TGTAAGAATTTACAAGC-CATAAAAATGGCATTGGCACATAGAAATAGGAAGATGTGC-CTAAAC
818 -G-CAGGATCGGC-AGCACA-CAGAGGGGGACCCG-AC-T-G--ATCCCCGGCT-TGCGC--ATC
*** ** * *
17868878 --CCACCTACCATCCTATCGAT
871 TGCC-CCT-CTGGCCGGTTGAG
* * * * * *
17868898 C-CACGACTTGCGCATCCTGTCTCTC-TGGCG--GACGTAGTGCCCGTCCGCCCGTCTACCCGCT
1 CGCCCG-C--ACGC-T-C-GT-T-TCGTGG-GTTGACTTAG-G--CATACG---G---A---GTT
* * * * * * * * *
17868959 CGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT-TGAATCGGATCGAGG
45 C-ATTC-CCAG-T--C-TAAGCATACGGAGTTCATTCCCAATCTAAGATCAG-ACCGGACCGAGG
* * * * * * * * ****
17869023 GTTACAGTAGCAGGAT-C-GGTAGCAC--GCATAAGGGGACTCG-ACCG-ATCCCCGGCTTGCGC
103 GTTGCGGCAGCA-CATGCTGG--GCTCGGGCAT---GTG-CTGGTGCCGTAT--TTTTCTT-CGC
*** * * ** * * * * ** ** *
17869082 ATCCCGC-CCCTCTGGCCAGCTG-AGC-GCCCGCACGCTCGTTTCGTTTGTTGAC-ATAGGCATA
158 --GGGGCACCATC-GTCC-GGAGAACCTGACCG-ACG-GCATTGGGTTT-CCGACGATCGG----
* ******* * ** * * * * * ** ** * *** *
17869143 CGGAGTTCATTCCCAGTCTAAGCATACGAAGTTC-AT---TCCCAGT-CTAAG--ATCGGACTGG
212 -GGAG-GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*** * ** * ** * * **** ** * ***
17869201 ACCGAGGGT-TACGACAGCACATGCT-G-G-GCTCGGGCATGTGC-TAGTGCTGCATTT-TTCTT
275 -CC--CCCTATCCCTCATCA-AACCTCGAGAACTC--ACACCCCCTTAAAG-AGCATTTGAGATT
* * * * * ** *** * * * *
17869260 CGT-CTGGGCATTAT-C-GTC-GGAGCATCGTTGGAGAACCTGACCA-GCGG-CA-TTGGGGTTC
333 -TTAC-AGG--TT-TGCTGCCAGTAGC--CATTAAAGTGTCTGA-AATGGGGACACTT---TTTT
* **** * * * * *** *
17869318 CAACGATCGGGGGGGC-CGGGGGGGTGTGCGCACATGATGTGCGA-TGGGT-GCTGGCACTTGGC
387 CAA--AT-----GGTCAC---AAAATCT-TGTACA--CT-T-CGAGTTTTTAGCT-G-AATT---
* ** * * *
17869380 CCTTATATTG-GCCCCCTATCCCTCATCAAAACT-CAAGAACTCACACCCCGT-TA-AAGAGCAT
432 --TT-T-TTGTG----C-AT-GC-CAAAAAAAATACAAGGA-T--CA---CGTCTACCA-AG--T
**** * ** * * * *** ****
17869441 TTGAGATTTTACAGGT-TTGTTGCCAGTAGCCATTAAAGTGTTT--GAAATTGGGACACTTTTTT
477 TTG-G-GGCCAAAACTCCT-TT--C-G-A---A--AAAAT-TTTAAAAAATCCCGA-AC--CGGA
* * * * ** ** * * * *
17869503 CAAA-TGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGTA-TTGTTTTGCGCATGCCAAC-
526 AAAAGT-TTCA-AAAATCGTG-AAAAAT--A-G--AAAAC-G-AGTCGTCTTGC-CATG-AAACT
** ** * * * * ** ** ** *** * **
17869565 AAAAATACAAGGATCATGTCTACCAAGTT-TGGGGCCAAAACT-CCTTCCAAAAAAATTTTAAAA
579 TCACGT-GAAGGCTTAAG-GGACC-A-TTGT-ATG---AATTTACAAGCCATAAAAA---T--GG
* * * * * * * *** *** * ** *
17869628 AATCTCGAATCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGTGTCA-TCT-T-G--CCA
631 CAT-TGGCAT-GCAGAAA-TAT-GAAGAT-GTGCCTAA-A-CCCACCTACCACCCTATCGATCCA
* * * *** * ** * * * *** **** * ** * ****
17869688 TGATACTT-CACATGAAGGCT-TAAGG--GAC-CATTGTATG-AATTTACAAG-CAATAAAAAT-
689 CG--GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTGCCCGCCACT-CGTTTC
* * * ** * * ** * ** ** *
17869745 GGC-ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCA-CCTACCATCCTATC-GATCC-AT
751 GTCGGTTGG--CTTAGGCATACG--GA-GT-TC-ATTCCCAGTCTAAGATCAGACCAGA-CCGA-
* * ** ** * * * * * * * * *
17869806 GGCTTGC-GCATCCCG-TCTCTCTG-GC-CGGCGTAGTG-CCCGCCTG---CTC-G-TTTCG--T
807 GGGTTGCGGCAGCAGGATC-GGCAGCACACAGAG-GGGGACCCGACTGATCCCCGGCTTGCGCAT
*
17869859 C-G---GT-TGG-C--TT-AG
870 CTGCCCCTCTGGCCGGTTGAG
* * * * *** * *
17869871 -GCATACGGA-GTTC-ATTC-CCAG-T-A--TAAGCATATGGA--T--TT--CA-T-T---C---
1 CGC--CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * ** * *
17869914 C-CAG-----------TCTAAGATCAGACCGGATCGAGGGTTATGGCAGCACATGCTGGGCTTGA
64 CGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
*
17869967 GCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACTTG
129 GCATGTGCTGGTGCCGTATTTTTCTTCG-CGGGGCACCA---TC---G--T--CCGGAGAACCTG
* * *
17870032 ACCGGCGGCATTGGGGTTCCAACGATCGGGGA-GCC--GGGGG-GTGCGCACATGATGTGCGATG
183 ACCGACGGCATTGGGTTTCCGACGATCGGGGAGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* * * *
17870093 GGT-CTAGTACTTGGCCTTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAATTCACACCCC
248 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
17870157 CTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGA
313 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
17870222 TACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTAG-GCA
378 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-GTGCA
* * * *
17870286 TGCCAACAAAAAATACAATGATCAAGTCTACAAAGTTTGGGGCCAAAACTCGTTTCGAAAAAATT
442 TGCCAA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
* * ** * *
17870351 TTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCC
506 TTAAAAAATCCCGAACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * * * *
17870416 ATGAAACTTTACATCAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGTATTG
571 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
17870481 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGAAT
636 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * * * * * *
17870546 CTCATCTCT-TCAGCCGACGTAGTGCCCGCCCGCCCGCCCGTGCGCTCGTTTTGTTGGTTGGCAT
701 CCCGTCTCTCT-GGCCGGCGTAGTGCCCGCCCG-CTGCCCG-CCACTCGTTTCGTCGGTTGGCTT
** * * *
17870610 AGGCATATAGAGTTCATTCCCAGTCTAAGAT-AGGACCAGATCGAGGGTTGCAGCAGCAAGATCG
763 AGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACCGAGGGTTGCGGCAGCAGGATCG
** ** ** * * * * * * *
17870674 ATAGCATGCAGAGGGGGAATCG-GTCAATCTCCGACTTGCGCATCCCGCCCCTCCGGCCGGGCTG
827 GCAGCACACAGAGGGGGACCCGACT-GATCCCCGGCTTGCGCAT-CTGCCCCTCTGGCC-GGTTG
17870738 AG
889 AG
* * * *
17870740 CGCTCGCACGTTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
17870805 GAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCCAAGATTGGACCAGACTGAGGGT
66 GAGTTCATTCCCAATCTAAG-AT-C--AG---------A--CC------GGA-C---C-GAGGGT
* * * * * * **
17870870 TGTGGCAGCACATACTGGGCTCAGGCATGTGCT-GTGTCGCATTTCTCTTCGCGGGGCATAATCG
105 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCGGGGCACCATCG
** * * *
17870934 T-CGGAGCATCATCGGAGAACCTGACCGACATTAGGGTTT-CGGCGAT-GGGGGGGCCGGGGGGT
170 TCCGGAG-A--A-C-CTG-ACC-GA-CGGCATT-GGGTTTCCGACGATCGGGGAGGCCGGGGGG-
* * *
17870996 GTGTGCGCACATGATGTGCGATGGATGCTGGTACTTTGCCCTTATATTGTCCCCCTATCCCTCAT
225 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * * *
17871061 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACTAGTAGC
290 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
17871126 CATTAAAGAGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTT
355 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
17871191 TTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCC
420 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * * *
17871256 AAAACTCCTTCCGAAAAAATTTTCAAAAATCTCGAGCCGTAAACAGTTTCAAAAATCGTGAAAAA
485 AAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGGAAAAAGTTTCAAAAATCGTGAAAAA
* * * *
17871321 TAGAAAACGAGTCGTATTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATCATTTTA
550 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
17871386 AAAGCCATAAAAATTGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCT
615 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * * *
17871451 ATCGATCTACGGCTTGCGCATCCCGTCTCTCTAGTCGACGTAGTGCCCACCCGCCCGCCCGTCCG
680 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CTGCCCG-CCA
* * * ** * *
17871516 CTCGTTTCATCAGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAGATTAGGCTGAG
743 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * * * *
17871581 GGTTACGGCAACAGGATCGACAGCACGCAGAGGTGGACCCGACCGATCCCCGGCTTGCGCATCCC
808 GGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACTGATCCCCGGCTTGCGCAT-CT
*
17871646 GCCCCTCTGGCCGGCTGAG
872 GCCCCTCTGGCCGGTTGAG
* *
17871665 TGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * * * * *
17871730 GAGTTCATTCCCAGTCTAAGACCGGACCAGACCGAGGGTTGCAGTAGCACATGCTAGGCTCGGGT
66 GAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
*
17871795 ATGTGCTGGTGCCGTATTTTTTTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGAC
131 ATGTGCTGGTGCCGTATTTTTCTTCG-CGGGGCACCAT---C---G--TC--CGGAGAACCTGAC
* * ** * * ***
17871860 CGACGGTATTGGGGTTCCGGTGATCGGGGGGGTC-GGGGGGTGTGCGCACATGATACACGATGGG
185 CGACGGCATTGGGTTTCCGACGATCGGGGAGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
*
17871924 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCCT
250 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
17871989 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
315 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
17872054 CTTTTTTCAAATGGTCACAAAATCTTCTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGC
380 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
17872119 CAACAAAAATACAAGGATCACGTCTACCAA-TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
445 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT-A
** *
17872183 AAAAATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
509 AAAAATCCCGAACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
** * *
17872248 AAACTTCACGTGTCGGCTTAAGGGACCATTCTATGAATTTACATGCCATAAAAATGGCATTGGCA
574 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
17872313 TGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCC
639 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * * *
17872378 GTCTCTCTGGTCGGCGTAGTGCCCGTCGGCCCGCCCGCCCGCTCGTTTGGTCAGTTGGCTTAGGC
704 GTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CTGCCCG-CCACTCGTTTCGTCGGTTGGCTTAGGC
* ** * * **
17872443 ATACAGAGTTCATTCCCAGTCTAAGATTGGACCTGATCGAGGGTTGCGATAGCAGGATCGGCAGC
767 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* *
17872508 AGGATCGACAGCATGCAGAAGGGACCCAACTGATCCCCGGCTTGCACATCTCGCCCCTCTGGCCG
832 ---A-C-ACAG-A-G--G--GGGACCCGACTGATCCCCGGCTTGCGCATCT-GCCCCTCTGGCCG
*
17872573 GCTGAG
885 GTTGAG
* * * * * * * *
17872579 TG-CCGCATGCTCATTTCGTGGGTTCACTTAGGCATACGGAGTTAATACCCAAGTCTAAGCACAT
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCATAC
* ** * * *
17872643 GGAGTTCATTCCCAGTCTAAGATC-GAAAAGAACCGAAGGGTTGCGGAAGCACATGCTAGGCTCG
65 GGAGTTCATTCCCAATCTAAGATCAG-ACCGGACCG-AGGGTTGCGGCAGCACATGCTGGGCTCG
* *
17872707 GGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATTGCCGGAGAACCT
128 GGCATGTGCTGGTGCCGTATTTTTCTTCG-CGGGGCA-C--CATC---G---T-CCGGAGAACCT
* * ** *
17872772 GACTGACGGTATTAAAGTTT-CGACGATCGAGG-GGCC-GGGGGGTGTGCGCACATGATGTGCGA
182 GACCGACGGCATT-GGGTTTCCGACGATCGGGGAGGCCGGGGGGGTGTGCGCACATGATGTGCGA
**
17872834 TGGGTGCTCTTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTTC-AGAACTCACAC
246 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACAC
* *
17872897 CCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGG
310 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
17872962 GG-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTG
375 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
17873025 CAAGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCTGAAAAAA
440 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAA
* ** * * *
17873089 ATTTAAAAAAT-TTGAAACCGTAAAAATTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
504 TTTTAAAAAATCCCG-AACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
17873153 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTA
568 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
17873218 TTGGAACAT--AGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
633 TTGG--CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
17873281 CGCATCTCGTCTCTCTAGCTGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
696 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CTGCCCG-CCACTCGTTTCGTCGGTTG
** * *
17873346 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAATTGAGGGTTGTGGTAGCAGG
759 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGG
* ** * **
17873410 ATCAGCAGCACGTAGAGGGGGACCC-AGTCGATCCCCGGCTTATGCATCTCGCCCCTCTGGCCGG
823 ATCGGCAGCACACAGAGGGGGACCCGACT-GATCCCCGGCTTGCGCATCT-GCCCCTCTGGCCGG
17873474 TTGAG
886 TTGAG
* * * * * * *
17873479 CGCCCGCATGCTCATTTCGTGAGTTGACTTAGGCATACGAAGTTTATTCCCAGTCTAAGCGTACA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * **
17873544 GAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCCAGGCTCGGGC
66 GAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** * * *
17873609 ATGTGCTGGTGCCACATTTTTCTTTGTC--GG-AGCATCGT-CGGAGAACCTGACCGGACCG-A-
131 ATGTGCTGGTGCCGTATTTTTCTTCG-CGGGGCACCATCGTCCGGAGAACCTGACC-GACGGCAT
* * * * * *
17873668 -GGGTTACGGCAGCAGGATCGACAGCATGCAGATGGGGACCCGACCGATACCCGGCTTGCGCATC
194 TGGGTTTC--C-G-ACGATCG--GGGAGGCCG--GGGG----G---G-T-----G--TGCGCA-C
* * * * * ** * ** * ** **
17873732 CTGCCCTTTTGGCCGGCTGAGTGCCCGCACTCTAGTTTCGTGGGT-TGACTTAGGCATACGGAGT
235 ATG---ATGT-G-C-GATGGGTGCTGGTACT-T-G-GCCCT---TAT-A-TT-GGC-CCCCTA-T
* * * ** * ** ** * **
17873796 ---TCATTCCAA-GTCTAAGCATACGGAGTTCATTCCCAGTCTA-AG-A-TCG-GATTGGACCGA
283 CCCTCA-TCAAACCTC-GAG-A-ACTCA---CA-CCCCCTTAAAGAGCATTTGAGATTTTA-C-A
* * * *** * * * ***
17873853 GGATTGC-GGCAGCA--CA-TGCTGGGCTCT-AGCATGTGCTGGTACCGCATTTTTCTTCACCGG
338 GGTTTGCTGCCAGTAGCCATTAAAGTG-TCTGA-AATG-G--GG-A---CACTTTT-TTCAAATG
* * * * * * **** * *** * * * * ****
17873913 GGCAC--CATCGTCGGAC-CATCGCCG-GGGAACCTGACCGACGGTATTGCG-GTTCC---GGTG
393 GTCACAAAATC-TTGTACACTTCG-AGTTTTTAGCTGA---ATTTTTTTGTGCATGCCAAAAAAA
** ** * * * **** ** * ** *
17873970 AT-CGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT--TGGCCATTAT
453 ATAC--AAGGATCA---CGTCTAC-CA-A-G-T-T----TGGG-GCCAAAACTCCTTTCGAAAAA
******* ** * * * *** * *
17874032 ATTGGCCCCCTATCCCTTGTCAAACCTCAAGAA--CTCACACCCCCTAAAAGAGCATTTGAGATT
503 ATT-TTAAAAAATCCC--G---AACCGGAAAAAGTTTCAAAAATCGTGAAA-A--A--T-AGA--
** * * * * ** * *
17874095 TTAC-AGGTTTGCTGCCAATAGCCATTAAAATGTCTGAAATG-GGGACACATTTTTCAAATGGTC
554 AAACGA-G--T-C-GTC--TTGCCATGAAACT-TC--ACGTGAAGG---C----TT--AA-GG-G
* * * * * *** * *
17874158 ACAAAATCTTGTACACTTCGAGTTT-C-TGGC-T--GAATGTTTTTGTGCATGCCAACAAAAAT-
598 AC--CA--TTGT--A--T-GAATTTACAAGCCATAAAAATGGCATTG-GCATG-C-AGAAATATG
* * ** * ** * * * * **** **** *
17874217 AAAAGGAT-CACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGA--AAAAATTTAAAAAATCAC
651 AAGATG-TGC-C-TAAACCCA-CCT---ACC---ACCCTAT-CGATCCACGGCTT-GCGCATCCC
* * *** * * * ** ** ** *** *
17874279 GAACTGCAAAAAGTTTTGAAAGTCATAAAAAATAGAAAACGAGTCG-T-CTTGCCA-T-GAAACT
704 G-TCT-C-------TCTGGCCGGCGT----AGT-G--CCCG-CCCGCTGCCCGCCACTCGTTTCG
* * * * ** * ** * * *** *
17874340 TC--AT-G-TGAAGGCTTAAGG-GACCATT----GTATGAATTTACAGGCCATAAAAATGGCATT
752 TCGGTTGGCT-TAGGCATACGGAGTTCATTCCCAGTCT-AAGAT-CAGACCAGACCGA-GG-GTT
** * * * * ** ** * *
17874396 GGCACACAGAAATATGAAGATGCGCCTAAACCCACCTA---TCACCCCA-TCGATCCACGGCTTG
812 -GC-GGCAG---CA-G--GAT-CGGC--AGCACACAGAGGGGGACCCGACT-GATCCCCGGCTTG
* * * * * *
17874457 CACATCCCGTCTCTTTGGCCGACGTAGTGCTCGGCCG
865 CGCAT-CTGCCCCTCTGG-C--CG--GT--T--G-AG
* * * *
17874494 CCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTGCATTCCCAGTCTAAG-ATT
1 --CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA-T
* * * ** ** * * **
17874558 GGATCGGACTGAGGGTT-GTGGTAGCAAGATCGGCAGCATGCAGAAGGGGACCCGACCGATCCCC
63 --A-C-G---GA--GTTCAT--T-CCCA-ATC-TAAG-AT-CAG-ACCGGA-CCGA-GGGT-TGC
** * ** ***** * * * *
17874622 GGTTTGCGCAT-C-CCGC-CCCTTTTGTCGGCTGAGCGCCCGCATGCTCGTTTCAT-G-GGTTG-
108 GG-CAGCACATGCTGGGCTCGGGCATGT--GCTG-GTG-CCGTAT--T--TTTCTTCGCGG-GGC
* * * ** ** * ** * * * * * *
17874681 ACCTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
163 ACC-A-TCGTCCGGAGAACCTGACC-GAC--GGCAT-TGG-G-T--TT-CC-G---ACGATCGGG
** * * * ** * *** * *** * *
17874746 CCGGACC-GAGGGTTGCAGCAGCACATGCCGGGCTCGGGCATGTGCTGGTGC-T-GTATTTTTCT
213 GAGG-CCGGGGGGGTG-TGC-GCACATGATGTGCGATGG---GTGCTGGTACTTGGCCCTTAT-A
* * * * * * * ** *
17874808 TCGTCGGGGCACC-AT-CGTCGGAGC-ATCGC-CGAAGAACCCA-ACCGACGACATTAGGGTTCC
271 T--T--GGCCCCCTATCCCTC--ATCAAAC-CTCG-AGAACTCACACC--C--CCTTAAAG---A
** * *** * * * * * * * ****
17874868 GACGATCGGGGGGGTCAGACGGTGTGC-ACAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
321 G-C-ATTTGAGATTTTACA-GGTTTGCTGC-CA-G-T-AGCCATTAAAG-T-GT-C-T-G-----
* * ** * ** *** ** * * *
17874932 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCACAACCCCCTTAAAGAGCATTTGAGAT
369 AAATGGGGACACT-T---TTTTCAAA--T---G-G-TCACAA-AATCTTGTACA-C-TTCGAGTT
** ** * ** * * ** * **
17874997 TTTA-C--AGGTTTGCTG-CCAGTAGCC-ATTAAAGTGTCTGAAATGGGGA-CATTTTTTTCAA-
420 TTTAGCTGAATTTTTTTGTGCA-T-GCCAAAAAAAAT-AC---AA---GGATCACGTCTACCAAG
* * * * * * ***** * * *** *****
17875055 -AT-GGTCACAAAA-T-C-TTC---TACACTTT----GATTTTTTAGCTG-AATTTTTTTGTGCA
476 TTTGGGGC-CAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGGAAAAAGTTTCAAAAA
*** * ** * **
17875107 TGCCAACAAAAATACAAGGATCACGTCTACCAGGT-TTGGGGCCA-AAAATCCTTC-C-CAAATT
540 T--CGTGAAAAATAGAA--A--ACGAGT--C--GTCTT---GCCATGAAA--CTTCACGTGAA--
*** *** ** * ** * ** ** **
17875168 TTTTTTAAAAAATCTCGAGCCGAAAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
588 -GGCTTAAGGGA-C-C-A-TTGTATGAA--TTT-ACAAGCCAT-AAAAAT-GGCATTG-G-CA--
* ** *** ** ** * ***
17875233 TTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTAGAAGCC-AT--AAAAA
639 -TG-CA-GAAA--T-A--TGAA-G---ATGTG-CC--TAAACCCACCTACCACCCTATCGATCCA
* * * ** * *** ** * * * *
17875295 TGGCATTG-GCATGCAGAAATATAAAGATGTGCCTAAACT-CACCTACCACCCTATCGATCCATA
689 CGGC-TTGCGCATCCCG-TCTCTCTGGCCG-GCGT--AGTGC-CC-GCC-CGC--T-G--CC---
* * * * * * ** * **
17875358 ACTTGCGCATCCCGTCTCTCTGACAGGTGTAGTGCCT-GCCCGTCCGCCCGCTCGATCGTTTC-G
738 -C--GC-CA-CTCGT-T-TC-GTC-GGT-T-G-GCTTAG-GCATACG-GAGTTC-AT--TCCCAG
* * * * * * * ** * * *
17875421 T-T-AGTTGGCTTAG-GCATACGGA-GTTCATTC-CCAGTCTAAAATTGG-ACCGA-ACTGAGGG
786 TCTAAGAT--C--AGACCAGACCGAGGGT--TGCGGCAG-C-AGGATCGGCAGC-ACACAGAGGG
** * * *
17875479 TTA-CGGCAGCAAGATCGACAGCACCCAGAAGGGAACCCGGCCGATCCTCGGCTTGCACATCCCG
842 GGACCCG-A-C-TGAT----------C---------CCCGG-C--T--T--GC--G--CAT-CTG
* *
17875543 CCCCTCTGGCCGGCTGAA
873 CCCCTCTGGCCGGTTGAG
* * ** *
17875561 CGCCCGCATGCTCGTTTCGTGGGTTGACCTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * * * * *
17875626 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCTAGGGTTACGGTAGTACATGCTAGGCTCGGGC
66 GAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
17875691 ATGTGTTGGTGCCGTATTTTTCTTCACCGGGGAACCATCGCTGGAGCATCGTCGGAGAACCTGAC
131 ATGTGCTGGTGCCGTATTTTTCTTC-GCGGGGCACCAT--C----G--TC--CGGAGAACCTGAC
* * *
17875756 CGACGACATTGGGGTTCCGACGATCGGGCG-GGCCGAGGGGGGTGTGCGCACAGGATGTGCGATG
185 CGACGGCATTGGGTTTCCGACGATCGGG-GAGGCCG-GGGGGGTGTGCGCACATGATGTGCGATG
* * *
17875820 AGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCGCACCCC
248 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
17875885 CTTAAAGAGCATTTGAGATTTGACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
313 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
17875950 CACTTTTTTCAAATGGTCACGAAATCTTGTACACGTCGAGCTTTTAGCTGAATTTTTTTGTGCAT
378 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
17876015 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
443 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT
* * *
17876080 AAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
508 AAAAAATCCCGAACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
17876145 GAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
573 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * **
17876210 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCC
638 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
17876275 CGTCTCTCTGGCTGGCATAGT----G-CC-C-GCCCG---CTCGTTTCGTCGATTGGCTTAGGCA
703 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTGCCCGCCACTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * *
17876330 TACAGAGTTCATTTCCAGTCTAAGATCAAACCAGACTGAGGGTTACGGTAGTAGGATCGGCAGCA
768 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* ** * *
17876395 CGCAGAGGGGGACCCGACCAATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAG
833 CACAGAGGGGGACCCGACTGATCCCCGGCTTGCGCAT-CTGCCCCTCTGGCCGGTTGAG
* *
17876454 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* *
17876519 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGC
66 GAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
17876584 ATGTGCTGGTGCCGTATTTTCCTTCATCGGGGCACCATCGT-CGGAGCATCGCTGGAGAACCTGA
131 ATGTGCTGGTGCCGTATTTTTCTTC-GCGGGGCACCATCGTCCGGAG-AAC-CT---G-ACC-GA
* * ** *
17876648 TCGGCAGCAATGGGGTTCCGGTGATCGGGG-GGCCGGGGGGGTGTGCGCACATGATGTGTGATGG
188 -C-G--GCATTGGGTTTCCGACGATCGGGGAGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
*
17876712 GTGCTGGTACTTCGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
249 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * * *
17876777 TTAAAGAGTATTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAT
314 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * *
17876842 ACTTCTTTGAAATGGTTACAAAATCTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
379 ACTTTTTTCAAATGGTCACAAAATC-TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
17876907 GCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTT
443 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT
* *
17876972 AAAAAAATCTCAAACCGTG-AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
508 -AAAAAATCCCGAACCG-GAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
17877036 ATGAAACTTAATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTG
571 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
**
17877101 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTA-CACCCTATCGATCCACGGCTTGCGCAT
636 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
17877165 CCCGTCTCTCTGGCCGGCGTAGTGCCCG-TC-C-GCCCG---CTCGTTTCATCGGTTGGCTTAGG
701 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTGCCCGCCACTCGTTTCGTCGGTTGGCTTAGG
* * ** *
17877224 CATACGGAGTTCATTCCTAGTCTAAGATCCA-ACCGGATTGAGGGTTGCGGCAGCAGGATCAGCA
766 CATACGGAGTTCATTCCCAGTCTAAGAT-CAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
** * * * *
17877288 GCACGTAGAGGGGGACTCG-GTCGATCCCCAGCTTGCGCATCTCGCCCTTCTGGCCGGTTGAG
830 GCACACAGAGGGGGACCCGACT-GATCCCCGGCTTGCGCATCT-GCCCCTCTGGCCGGTTGAG
* * * * *
17877350 CGCCCGCACGCTCATTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * *
17877415 GAGTTCATTCCC-ATGTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** ** *
17877479 ATGTGCTGGTGCCACATTTTTCTTCGTC--GG-AGTATCAT-CGGAGAACCTGACC-AGCGGCAT
131 ATGTGCTGGTGCCGTATTTTTCTTCG-CGGGGCACCATCGTCCGGAGAACCTGACCGA-CGGCAT
* * * *
17877539 TGGGGTTCCGACGATCGAGGG-GGTCGGGGGGGTGTGCGCACATGATTTGTGATGGGTGCTGGTA
194 TGGGTTTCCGACGATCG-GGGAGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * * * *
17877603 CTTGGCCATTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTTACACCTCTTTAAAGAGC
258 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
17877668 CTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTC
323 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
17877732 AACTGGTCACAAAATCTTGCACACTTTGAGTTTTCAGCTGAATTTTTTTGTGCATG-CAAACAAA
388 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA-AAA
* * * * *
17877796 AATACAAGGATCACGTCTACCATGTTTGGGGCTAAAACTCCTTCCAAAAAAAATTTAAAAAATCC
452 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCC
* * ** * *
17877861 CGAACCGTAAAAAGTTTTAAAAATTATGAAAAATAAAAAACGAGTCGTCTTGCCATGACACTTCA
517 CGAACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
17877926 CGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTGGCATGCAAAAA
582 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * * *
17877991 TATAAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCACGACTTTCACATCCCGTCTCTCT
647 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * * *
17878056 AGTCGGTGTAGTGCCCG--CAC-GCCCGTCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGT
712 GGCCGGCGTAGTGCCCGCCCGCTGCCCG-CCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * *** * ** * * ***
17878118 TCATTCCTAGTCTATGATCAGAATGGACCGATGGTTGTTGCAGCAGGATCAGCAACATGTAGAGG
776 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGG
* * * * *
17878183 GGGACCCG-GTCGATCCCCGACTTGAGTATCTCGCCCCTCTGGCCGGCTGAG
841 GGGACCCGACT-GATCCCCGGCTTGCGCATCT-GCCCCTCTGGCCGGTTGAG
* * * * * *
17878234 CGCCCACACGATCGTTT-GATGGGTTGACTTAAGCATACAGAGCTCATTCCCAATCTAAGCATAC
1 CGCCCGCACGCTCGTTTCG-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * ** * ** *
17878298 GAAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGATAGCATATGCTGGGCTCGGG
65 GGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
*
17878363 CATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCAGCATCGCCGAAGCATCCCCGGAGAACCTGA
130 CATGTGCTGGTGCCGTATTTTTCTTCG-CGGGGCACCAT---C---G--T--CCGGAGAACCTGA
* * * * * **
17878428 CCGACGGCATTGGGGTT-CTAGCTATCTAGGG-GGCCGGGGGGGTGTGCGCACATAATGTGTAAT
184 CCGACGGCATTGGGTTTCCGA-CGATC-GGGGAGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* * * *
17878491 GGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCTTCAAACCTCTAGAACTCACATCC
247 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * *
17878556 CCTTAAAAAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTCT-AAATTGAG
312 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-TGGG
*
17878620 GACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTA-CATGAA-TTTTTTGTG
376 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAATTTTTTTGTG
* * * *
17878683 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAAAT
440 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* ** **
17878748 TTTAAAAAAATCCTGAACCATAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTG
505 TTT-AAAAAATCCCGAACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
17878813 CCATGAAACTTCACGTGAAGGCTCAAGTGACCATTGTATGAATTTACAAGCCATAAAAATCGCAT
569 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* **
17878878 TGTCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
634 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
17878943 ATCACC-TCTATCTGGCCGACGTAGTGCCCGCCCGCCCGTCCCCCCACTCATTTCGTCGGTTGGC
699 ATC-CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CTG-CCCGCCACTCGTTTCGTCGGTTGGC
* * * *
17879007 TTAGGCATTCGGAGTTCATTCCCAGTCTAAGATTAGA-CTGAACTGAGGGTTGCGGCAGCAGGAT
761 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGAT
* * * * ** * * *
17879071 CGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGACTTATGCATCCCGCCCCTTTGGCCGGCTG
825 CGGCAGCACACAGAGGGGGACCCGACTGATCCCCGGCTTGCGCAT-CTGCCCCTCTGGCCGGTTG
17879136 AG
889 AG
* * *
17879138 CG-CCTCACAG-TTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATAC
1 CGCCCGCAC-GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
** * ** * *
17879201 GGAGTTCATTCCCAGCCTAAGATCGGACTAGATCGAGGGTTGCGGCAGCACATGCTGGGCTTGGG
65 GGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * *
17879266 CACGTGTTGGTGCCGTATTTTTCTTCCCCGGGTCACCATCGCCGGAGCATCGCCGGATAACCTGA
130 CATGTGCTGGTGCCGTATTTTTCTT-CGCGGGGCACCAT---C---G--T--CCGGAGAACCTGA
* * *
17879331 CCGACGGCTTTGGGGTTCCGACGATCAGAGG-GGCCGGGGGGGTGTGCGCACATGATGTGCGATG
184 CCGACGGCATTGGGTTTCCGACGATC-GGGGAGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* * *
17879395 GGTGCCGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCGAAAACTCACACCCC
248 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * *
17879459 CTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCGAGTAGCCATTAAAGAGTCTGAATTGGGGA
313 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
17879524 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTACAT
378 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
17879589 GCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAGAAC-CCCTTCTGAAAAAATTT
443 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTT
* * * * ** * *
17879653 TAAAAAATCTCAAACCGCAAAACGTTTTGAAAAGCATGAAAAATAGAAAACGAGTCGTCTTGCCA
507 TAAAAAATCCCGAACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
17879718 TGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTAAAAGCCATAAAAATGGCATTGG
572 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
17879783 CATGCAGAAATATGAAGACGTGGCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATT
637 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * *
17879848 CCGTCTCTCTGGTCGGCGTAGTGCCCGCCCACTTGACCGCCCGCTCGTTTTGTAGGTTGGCTTAG
702 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC-TGCCCG-CCACTCGTTTCGTCGGTTGGCTTAG
* *
17879913 GCATACGGAGTTCATTCCCAGTCTATGATCGGACCAGACCGAGGGTTGCGGCAGCA
765 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
17879969 CATGCTGGGC
Statistics
Matches: 13220, Mismatches: 2800, Indels: 2612
0.71 0.15 0.14
Matches are distributed among these distances:
841 5 0.00
842 3 0.00
843 6 0.00
844 8 0.00
845 7 0.00
846 12 0.00
847 9 0.00
848 21 0.00
849 275 0.02
850 103 0.01
851 11 0.00
852 14 0.00
853 13 0.00
854 5 0.00
855 4 0.00
856 5 0.00
857 3 0.00
858 14 0.00
859 83 0.01
860 453 0.03
861 12 0.00
862 3 0.00
863 38 0.00
864 60 0.00
865 332 0.03
866 95 0.01
867 12 0.00
868 13 0.00
869 11 0.00
870 16 0.00
871 8 0.00
872 2 0.00
873 7 0.00
874 358 0.03
875 133 0.01
876 4 0.00
877 6 0.00
879 160 0.01
880 147 0.01
881 50 0.00
882 161 0.01
883 12 0.00
884 199 0.02
885 273 0.02
886 13 0.00
887 19 0.00
888 79 0.01
889 16 0.00
890 138 0.01
891 449 0.03
892 182 0.01
893 878 0.07
894 222 0.02
895 76 0.01
896 214 0.02
897 7 0.00
898 8 0.00
899 335 0.03
900 488 0.04
901 74 0.01
902 426 0.03
903 1149 0.09
904 386 0.03
905 23 0.00
906 21 0.00
907 148 0.01
908 14 0.00
909 8 0.00
910 9 0.00
911 336 0.03
912 273 0.02
913 181 0.01
914 535 0.04
915 134 0.01
916 235 0.02
917 29 0.00
918 44 0.00
919 11 0.00
920 5 0.00
921 12 0.00
922 35 0.00
923 20 0.00
924 41 0.00
925 120 0.01
926 437 0.03
927 227 0.02
928 16 0.00
929 11 0.00
930 12 0.00
931 10 0.00
932 18 0.00
933 26 0.00
934 13 0.00
935 14 0.00
936 26 0.00
937 28 0.00
938 7 0.00
939 19 0.00
940 33 0.00
941 25 0.00
942 26 0.00
943 22 0.00
944 21 0.00
945 10 0.00
946 5 0.00
947 2 0.00
948 13 0.00
949 10 0.00
950 21 0.00
951 3 0.00
952 3 0.00
953 3 0.00
954 5 0.00
955 9 0.00
956 10 0.00
957 3 0.00
958 5 0.00
959 4 0.00
960 2 0.00
961 2 0.00
962 14 0.00
963 10 0.00
964 10 0.00
965 15 0.00
966 26 0.00
967 16 0.00
968 32 0.00
969 24 0.00
970 29 0.00
971 14 0.00
972 18 0.00
973 66 0.00
974 13 0.00
975 15 0.00
976 10 0.00
977 11 0.00
978 9 0.00
979 24 0.00
980 16 0.00
981 12 0.00
982 17 0.00
983 15 0.00
984 13 0.00
985 10 0.00
986 3 0.00
987 7 0.00
988 1 0.00
989 4 0.00
990 11 0.00
991 14 0.00
992 12 0.00
993 10 0.00
994 18 0.00
995 32 0.00
996 14 0.00
997 28 0.00
998 36 0.00
999 25 0.00
1000 13 0.00
1001 18 0.00
1002 17 0.00
1003 29 0.00
1004 12 0.00
1005 52 0.00
1006 16 0.00
1007 6 0.00
1008 9 0.00
1009 13 0.00
1010 2 0.00
1012 1 0.00
1014 2 0.00
1015 2 0.00
1016 2 0.00
1017 53 0.00
1018 4 0.00
1019 8 0.00
1020 3 0.00
1021 4 0.00
1022 14 0.00
1023 15 0.00
1024 124 0.01
1025 235 0.02
1026 262 0.02
1027 232 0.02
1028 177 0.01
1029 166 0.01
1030 271 0.02
1031 143 0.01
1032 176 0.01
1033 126 0.01
1034 106 0.01
1035 77 0.01
1036 106 0.01
1037 100 0.01
1038 225 0.02
1039 104 0.01
1040 160 0.01
1041 133 0.01
1042 104 0.01
1043 69 0.01
1044 82 0.01
1045 85 0.01
1046 76 0.01
1047 265 0.02
1048 271 0.02
1049 41 0.00
1050 41 0.00
1051 68 0.01
1052 43 0.00
1053 198 0.01
1054 43 0.00
1055 46 0.00
1056 29 0.00
1057 23 0.00
1058 27 0.00
1059 25 0.00
1060 153 0.01
1061 37 0.00
1062 41 0.00
1063 23 0.00
1064 65 0.00
1065 62 0.00
1066 29 0.00
1067 19 0.00
1068 50 0.00
1069 97 0.01
1070 64 0.00
1071 88 0.01
1072 154 0.01
1073 106 0.01
1074 48 0.00
1075 126 0.01
1076 27 0.00
1077 37 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (890 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
GAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGTATTTTTCTTCGCGGGGCACCATCGTCCGGAGAACCTGACCGACGGCATTG
GGTTTCCGACGATCGGGGAGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAA
CCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
GGCGTAGTGCCCGCCCGCTGCCCGCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGAC
CCGACTGATCCCCGGCTTGCGCATCTGCCCCTCTGGCCGGTTGAG
Found at i:17864513 original size:26 final size:26
Alignment explanation
Indices: 17864477--17864529 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17864467 GTTGACTTAG
*
17864477 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17864503 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17864529 G
1 G
17864530 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17866484 original size:860 final size:863
Alignment explanation
Indices: 17862754--17868343 Score: 6580
Period size: 893 Copynumber: 6.3 Consensus size: 863
17862744 AAGATCAGAC
* * * * *
17862754 CGGACCGACGGTTGCGGTAGCACATGCTAGTCTCGGGCATGTGCTGGCGCCGTATTTTTCTTCGC
1 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGC
* ** * * * * * * ** *
17862819 GGGGGCACCATCCCCGGAGAACCTGACAGGCGGCATTGAGTTTCTGGCGATCGGGGACGCCAGGG
66 CGGGGCACCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* * *
17862884 GGTGAGCGCACATGATGTGTGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCA
131 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * *
17862949 TCAAAGCTCAAGCACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
196 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * *
17863014 CCAGTAAAGTGTCTGAAATGGTGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGT
261 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
17863079 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC-AGCCAAGTTTGGGG
326 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGG
* *
17863143 TCAAAACTCCTTTCGAAAAAA-TTAAAAAAATCCCGAACCG-AAAAAGTTTCAAAAATCATGAAA
390 CCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAA
*
17863206 AAGAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
455 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
17863271 TACAAGCCATAAAAATGGCATTGGAATGTAGAAATATGAACATGTGCCTAAACCCACCTACCACA
520 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACA
* * * *
17863336 ATATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCTGACGTAGAGCTCGCCTGCCCGTTCACC
585 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT--AG-T-GCCCGCCCG----CC
** * * **
17863401 GCCTCGTTTCGTCGGTTAGCTTAGGCATATGGAGTTCATTCATAGTCTAAGATCAGACCAGACCG
642 AACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * * ** * *
17863466 AGGGTTACGGTAACAAGATCGGTAGCATGCAGAGGGGGACCCAACCGATCCTCGGCTTGCGCATC
707 AGGGTTGCGGCAGCAGGATCGGTAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* * * * *
17863531 TCGCCCTTCTGGCTGGCTGAACGCCCGCACGCTCGTTTCGTGAGTTAACTTAGGCATACGGAGTT
772 CCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
*
17863596 CTTTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
837 CATTCCCAG--T---C--ACAGAG-----T---A-TC-AAGAT---A
* *
17863643 CTGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGATGGTGCCGTATTTTTCTTCG
1 C-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCG
* * * **
17863708 CGGGGGCACCATC-TCCGGAGAACCTGACTGACGGCATTGGGTTTCCGACGATCGGGGACGCCGG
65 CCGGGGCACCATCGT-CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-G
*
17863772 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCC
128 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * *
17863837 TCATCAAAGCTGGAGCACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
193 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
17863902 TAGCCAGTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
258 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
17863967 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
323 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * ** * * *
17864032 GGCCAAAACTCATTGCGAAAAAATTTCAAAAAATCTTGAACTGGAAAACA-TTTCAAAAATCGTG
388 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA-AGTTTCAAAAATCATG
*
17864096 AAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
452 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
17864161 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
517 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
17864226 ACCCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGGCC-AGTGTAGTGCCCGCCCGTCTGCC
582 ACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGT----G-CC--C-GCC
* * * *
17864290 CGCCAACTCGTTTTGTCAGCTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAG
638 CGCCAACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * ** * * * *
17864355 ACCAAGGGTTGTGGCAGCGGGATCGGCAGCACGTAGAGGGGGACCTGACTGATCCTCGGCTTACG
703 ACCGAGGGTTGCGGCAGCAGGATCGGTAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * *
17864420 CATGCTGCCCCTTTGGCCGGCTGAACGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGG
768 CATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
17864485 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGA
833 AGTTCATTCCCAGTC--A-C--A--GAG-----T----ATC-AAGAT---A
* * * * *
17864536 CCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGAGCATATGCTGGTGCCGCATTTTTCTTCG
1 -CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCG
*
17864601 TCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
65 CCGGGG------CA-C----CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
* * *
17864666 GGGGGGCCGGGGGGTGTGTGCACATGATGTGCAATGGGTGCTAGTACTTGGCCCTTATATTGGCC
119 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
17864731 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTTAAGAGCATTTGAGATTTTACAGGTT
184 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
17864796 TGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTCG
249 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
17864861 TACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGCCTAC
314 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
** * *
17864926 CAAGTTTGGGGCCAAAACTCCTTTTAAAAAAATTTTAAACAATCCCGAACTGTAAAAAGTTTCAA
379 CAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
* *
17864991 AAATCATGAAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGACGGCTTAAGGGACC
444 AAATCATG-AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*** **
17865056 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTAACTAAAC
508 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* *
17865121 CCACTTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCATGCC
573 CCACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC---CC
** * ** * *
17865186 TGCCCGCCCGCTCATTTAATCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGA
635 -GCCCGCCAACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * * * *
17865251 -CTGAACCGAGGGTTCCGGCAGCAGGATCGGAAGCACGCCGAGGGGGACCTGGCTGATCCCCAGC
699 CCAG-ACCGAGGGTTGCGGCAGCAGGATCGGTAGCACACAGAGGGGGACCCGACCGATCCCCGGC
** * * ** * * * * * *
17865315 TTGCGCATCCAACCCGTCTGACCGATTGAGCGCCCGAACGCTCGTTTTGTGAGTTGTCTTTGGCA
763 TTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * *
17865380 TATGGAGTTCATTCCCAATC-TA-AG-ATC--GA-A
828 TACGGAGTTCATTCCCAGTCACAGAGTATCAAGATA
* *
17865410 CCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTG
1 -CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCG
* * * * * * * * *
17865475 TCGGGGTACCATCGTCAGAAAACTTGACCGACGGTATTAGGGTTCCGACGATCGGGGGAGTCGGG
65 CCGGGGCACCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GGCCGG
* * * * *
17865540 GGGGCTGTGGGCACATAATGTGTGATGGGTGCTGGTGCTTGGCCCTTATATTGGCTCCCTATCCC
129 GGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
17865605 TCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAG
193 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
17865670 TAGCCATTAAAGTGCCTGAAATAGGGACACTTTTTTCAAATGGTCA-ACAAATCTTGTACACTTC
258 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA-AAATCTTGTACACTTC
* * * *
17865734 GAGTTTTTAGCTGAAGTTTTTTGTACATGCCAAAAAAAAATACAAGAATCACGTCTACCAAGTTT
322 GAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTT
*
17865799 GGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
386 GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
* * *
17865864 GAAAAATAAAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGGCGTAAGGGACCATTGTATG
451 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
17865929 AATTTACAAGCCATAAAAATGGCACTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
516 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
17865994 CAC-CTATCGATCCACGGCTTGCGCATCCTGTCACTCTGGCCGATGTAGTGCCCGCCCGCCAACT
581 CACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCAACT
* * * *
17866058 CGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTAAGAAT-GGATCAGACCGAGG
646 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCAGACCGAGG
* * * *
17866122 GTTACGACAGCAGGATCGATAGCACACAGAGGGGGACCCGACCGATCCCTC-GCGTGCGCATCCC
710 GTTGCGGCAGCAGGATCGGTAGCACACAGAGGGGGACCCGACCGATCCC-CGGCTTGCGCATCCC
* * * * * *
17866186 ACCCCTCTGGCCGGCTGAGCGCCAGCACGCTCATTTCGTAGGTTGATTTAGGCATACGGAGTTCA
774 GCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
17866251 TTCCCAGTC-CA-AG-ATC-AGAT-
839 TTCCCAGTCACAGAGTATCAAGATA
* * * * * *
17866271 CGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCAGGCATCTGCTGATGTCGTATTTTTCTTCAC
1 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGC
* * * *
17866336 CGGGGCACCATCGTCGGAGAACTTGACCGACGGTATTGGGGTTCTGACGATCGGGGGGGTCGGGA
66 CGGGGCACCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-
* * * * *
17866401 GGGCTGTGCACACGTAATGTGCGATGGGTGCTGGTACATGGCCCTCATATTGGCCCCCTATCCCT
130 GGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
17866466 AATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
194 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
17866531 AGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
259 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
*
17866596 GTTTTTAGCTGAATTTTTTTGCGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
324 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * *
17866661 GCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCTGAACC-------G--T-AAAAATCGTGAA
389 GCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
* *
17866716 AAATAGAAAACGAGTCGTCTTGCCATGCAACTTCACGTGAATGCTTAAGGGACCATTGTATGAAT
454 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
17866781 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
519 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
17866846 -CTTATCGATCCACGAG-TTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTC
584 AC-TATCGATCCACG-GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCAACTC
* *
17866909 GATTT-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-CGGACCGGACCGAGGG
647 G-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
* * * * * * *
17866972 TTGTGGCAACAGGATTGGCAGCACACAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGC
711 TTGCGGCAGCAGGATCGGTAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC
* * * * *
17867037 CCCTCTGGCCGGTTAAACGCTCGCACTCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
776 CCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
17867102 CCCAGTCTAAGCATACGGAGTTTATTCCCAATCTAAGATCGGA
841 CCCAGTC--A-C--A--GAG-----T----ATC-AAGAT---A
* ** *
17867145 CCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCT
1 -CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCG
* * * * ** * * *
17867210 TCGAGGCACCATCGCCGGAGAACCTGACAGGTGGTATTAGGGTTGCGACGATCGGGGGGGCCGTG
65 CCGGGGCACCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-G
* * *
17867275 GGGGTGTGCGCACATGGTGTGCGATGGGTGCTGGTACTTGGCCCTTAGATTTGCCCCCTATCCCT
129 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
17867340 CATCAAACCTC-AGGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAG
194 CATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
17867404 TAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCG
258 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
17867469 AGTTTTTAGTTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGG
323 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * *
17867534 GGCCAAAAAT-CTTTCCGAAGAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGT
388 GGCCAAAACTCCTTT-CGAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
*
17867598 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTTAAGGCTTAAGGGACCATTGTATG
451 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
17867663 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
516 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
17867728 CACACTATCGATCCACAGTTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCC
581 CACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G--TGCCCG--C-CC
** * *
17867793 TGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGG
639 -GCCAACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * * * * * *
17867858 ATCGATGGTTGCAGCAGTAAGATCGGTAGCACACCGAAGGGGATCCGATCGATCCCCGTCTTGCG
703 ACCGAGGGTTGCGGCAGCAGGATCGGTAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * * * * *
17867923 CATCTCGGCCCTCTGGCCGGTTGAGCACCCACACGCTCGTTTCGTGGGTTAACTTAGGCATACGG
768 CATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
17867988 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGAT-
833 AGTTCATTCCCAGTC--A-C--A--GAG-T-A-T------C-AAGATA
* * * * * * *
17868035 CGGACCAGACTGAGGGTTGCAGCAGAACATGCTGGGCTCGGCCATGAGCTGGTGTCGCATTTCTC
1 CGGA-C---C-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTC
* * * * **
17868100 TTCG-CGGGGCATCATCGTCGGAGCATCACCGGAGAACCTGATCGGCAGCATTAGGGTTTCGGTG
61 TTCGCCGGGGCACCATCGTCGGAG-A--ACC--TG-ACC-GA-C-G--GCATTGGGGTTCCGACG
* *
17868164 ATCTGGGGGGCCGAGGGGGGTGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTA
115 ATCGGGGGGGCC---GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
**
17868229 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTGCCTTAAAGAGCATTTGAGATTT
176 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* **
17868294 TACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGAAACACTTT
241 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
17868344 GCCACATTTT
Statistics
Matches: 4117, Mismatches: 447, Indels: 256
0.85 0.09 0.05
Matches are distributed among these distances:
848 1 0.00
849 263 0.06
850 94 0.02
851 4 0.00
852 1 0.00
853 1 0.00
855 1 0.00
858 2 0.00
859 76 0.02
860 489 0.12
861 10 0.00
863 44 0.01
864 53 0.01
865 321 0.08
866 91 0.02
867 1 0.00
868 4 0.00
870 4 0.00
873 5 0.00
874 321 0.08
875 125 0.03
876 2 0.00
878 2 0.00
881 3 0.00
882 1 0.00
884 2 0.00
885 177 0.04
886 1 0.00
887 2 0.00
888 3 0.00
889 12 0.00
890 115 0.03
891 277 0.07
892 22 0.01
893 501 0.12
894 205 0.05
896 3 0.00
897 5 0.00
898 1 0.00
899 7 0.00
900 176 0.04
902 3 0.00
903 298 0.07
904 236 0.06
905 1 0.00
906 4 0.00
907 146 0.04
908 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (863 bp):
CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGC
CGGGGCACCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACAC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCAACTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
GCAGCAGGATCGGTAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
TGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
TCACAGAGTATCAAGATA
Found at i:17867116 original size:26 final size:26
Alignment explanation
Indices: 17867086--17867138 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17867076 GTTGACTTAG
*
17867086 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17867112 GCATACGGAGTTTATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17867138 G
1 G
17867139 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17867414 original size:874 final size:881
Alignment explanation
Indices: 17866237--17868343 Score: 2889
Period size: 874 Copynumber: 2.4 Consensus size: 881
17866227 GTTGATTTAG
* * * *
17866237 GCATACGGAGTTCATTCCCAGTCCAAGATCAGATCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** * * * *
17866302 CTCAGGCATCTGCTGATGTCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGAACTTGACCGAC
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCTTCGAGGCACCATCGCCGGAGAACCTGA-CGGC
* * * * *
17866367 GGTATTGGGGTTCTGACGATCGGGGGGGTCGGGAGGGCTGTGCACACGTAATGTGCGATGGGTGC
130 GGTATTAGGGTTC-GACGATCGGGGGGGCCGGG-GGG-TGTGCGCACATGATGTGCGATGGGTGC
* * *
17866432 TGGTACATGGCCCTCATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTTAA
192 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
17866497 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTT
257 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
17866562 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATGCCAA
322 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATGCCAA
*
17866627 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CAAAAAAATTTT-AAA
387 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CTTTCCAAAAAAATTTTAAAA
*
17866690 AAATCCTGAACC-G-T-AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGCAACTTCAC
451 AAATCCTGAACCAGTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
17866752 GTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
516 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
17866817 ATGAAGATGTGCCTAAACCCACCTACCAC-CTTATCGATCCACGAG-TTGCGCATCCCATCTCTC
581 ATGAAGATGTGCCTAAACCCACCTACCACAC-TATCGATCCAC-AGTTTGCGCATCCCATCTCTC
17866880 TGGCCGGCGTA-G-TGCCCGCCCG-C-CC-ACTCGATTT-GTCGGTTGGCTTAGGCATACGGAGT
644 TGGCCGGCGTAGGCTGCCCGCCCGCCGCCTACTCG-TTTCGTCGGTTGGCTTAGGCATACGGAGT
* ** * * *
17866939 TCATTCCCAGTCTAAGA-CGGACCGGACCGAGGGTTGTGGCAACAGGATTGGCAGCACACAGAGG
708 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAACAAGATCGGCAGCACACAGAAG
* * * *
17867003 GGGACCCGATCGATCCCCGACTTGCGCATC-CTGCCCCTCTGGCCGGTTAAACGCTCGCACTCTC
773 GGGACCCGATCGATCCCCGACTTGCGCATCTC-GCCCCTCTGGCCGGTTAAACACCCACACGCTC
*
17867067 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 GTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
17867112 GCATACGGAGTTTATTCCCAATCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
17867177 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCTTCGAGGCACCATCGCCGGAGAACCTGACAGGT
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCTTCGAGGCACCATCGCCGGAGAACCTGAC-GGC
*
17867242 GGTATTAGGGTTGCGACGATCGGGGGGGCCGTGGGGGTGTGCGCACATGGTGTGCGATGGGTGCT
130 GGTATTAGGGTT-CGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
17867307 GGTACTTGGCCCTTAGATTTGCCCCCTATCCCTCATCAAACCTC-AGGAAATCACACCCCCTTAA
193 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAA
*
17867371 AGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
257 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
* * *
17867436 TTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAA
322 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATGCCAA
* * *
17867501 TAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAAGAAATTTTAAAAA
387 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCAAAAAAATTTTAAAAA
17867566 AATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
452 AATCCTGAACC------AG-TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
17867631 CTTCACGTTAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
510 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
17867696 AGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACAGTTTGTGCATCCCGTC
575 AGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACAGTTTGCGCATCCCATC
*
17867761 TCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCTGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATA
640 TCTCTGGCCGGCGTAG-G-CTGCCCGCCCGCC-GCCTACTCGTTTCGTCGGTTGGCTTAGGCATA
* * * ** *
17867826 CGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCGATGGTTGCAGCAGTAAGATCGGTAGCACA
702 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAACAAGATCGGCAGCACA
* * * * * *
17867891 CCGAAGGGGATCCGATCGATCCCCGTCTTGCGCATCTCGGCCCTCTGGCCGGTTGAGCACCCACA
767 CAGAAGGGGACCCGATCGATCCCCGACTTGCGCATCTCGCCCCTCTGGCCGGTTAAACACCCACA
*
17867956 CGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
832 CGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
17868006 GCATACGGAGTTCATTCCCAGCCTAAGATCGGACCAGACTGAGGGTTGCAGCAGAACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
17868071 CTCGGCCATGAGCTGGTGTCGCATTTCTCTTCGCGGGGCATCATCGTCGG-AGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTT-------C-T--TCG-AGGCACCATCGCCGGAGA
* * ** *
17868135 ACCTGATCGGCAGCATTAGGGTTTCGGTGATCTGGGGGGCCGAGGGGGGTGTGTGCGCACATGAT
120 ACCTGA-CGGCGGTATTAGGG-TTCGACGATCGGGGGGGCC---GGGGG-GTGTGCGCACATGAT
*
17868200 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
179 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
** * *
17868265 CACACTGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGA
244 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
**
17868330 AATGGAAACACTTT
309 AATGGGGACACTTT
17868344 GCCACATTTT
Statistics
Matches: 1080, Mismatches: 105, Indels: 62
0.87 0.08 0.05
Matches are distributed among these distances:
873 5 0.00
874 257 0.24
875 153 0.14
876 3 0.00
882 1 0.00
884 3 0.00
885 177 0.16
886 1 0.00
887 1 0.00
889 10 0.01
890 1 0.00
892 5 0.00
893 46 0.04
894 213 0.20
895 1 0.00
901 1 0.00
902 1 0.00
904 45 0.04
905 5 0.00
906 4 0.00
907 146 0.14
908 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (881 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCTTCGAGGCACCATCGCCGGAGAACCTGACGGCG
GTATTAGGGTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCAAAAAAATTTTAAAAAAATC
CTGAACCAGTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
GATGTGCCTAAACCCACCTACCACACTATCGATCCACAGTTTGCGCATCCCATCTCTCTGGCCGG
CGTAGGCTGCCCGCCCGCCGCCTACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAACAAGATCGGCAGCACACAGAAGGGGACCCG
ATCGATCCCCGACTTGCGCATCTCGCCCCTCTGGCCGGTTAAACACCCACACGCTCGTTTCATGG
GTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17868016 original size:26 final size:26
Alignment explanation
Indices: 17867980--17868032 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17867970 GTTAACTTAG
*
17867980 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
17868006 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
17868032 G
1 G
17868033 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:17869175 original size:26 final size:26
Alignment explanation
Indices: 17869138--17869190 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17869128 GTTGACATAG
*
17869138 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17869164 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17869190 G
1 G
17869191 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17869910 original size:26 final size:26
Alignment explanation
Indices: 17869871--17869923 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17869861 GTTGGCTTAG
17869871 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
* * *
17869897 GCATATGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
17869923 G
1 G
17869924 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:17870496 original size:729 final size:731
Alignment explanation
Indices: 17869065--17870575 Score: 2217
Period size: 729 Copynumber: 2.1 Consensus size: 731
17869055 GGGACTCGAC
* * * * * **
17869065 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGC-TGAGCGCCCGCACGCTCGTTTCGTTTG
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT-AGTGCCCGC-CGCTCGTTTCGTCGG
*
17869129 TTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
64 TTGACATAGGCATACGGAGTTCATTCCCAGTATAAGCATACGAAGTTCATTCCCAGTCTAAGATC
* * * *
17869194 GGACTGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTAGTGCTGCATTTTTCT
129 AGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCTAGTGCCGCATTTTTCT
* ** **
17869259 TCGTCTGGGCATTATCGTCGGAGCATCGTTGGAGAACCTGACCAGCGGCATTGGGGTTCCAACGA
194 TCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCAACGA
* *
17869324 TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATT
259 TCGGGGGAGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGCACTTGGCCCTTATATT
* *
17869389 GGCCCCCTATCCCTCATCAAAACTCAAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACA
323 GGCCCCCTATCCCTCATCAAAACTCAAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACA
* * * *
17869454 GGTTTGTTGCCAGTAGCCATTAAAGTGTTTGAAATTGGGACACTTTTTTCAAATGGTCACAAAAT
388 GGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
17869519 CTTGTACACTTCGAGGTTTTAGCTGTATTGTTTTGCGCATGCCAACAAAAATACAAGGATCATGT
453 CTTGTACACTTCGAGGTTTTAGCTGAATTGTTTTGCGCATGCCAACAAAAATACAAGGATCAAGT
* *
17869584 CTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAATCGCAAAAAGTT
518 CTACAAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTT
* * *
17869649 TCAAAAATCGTGAAAAATAGAAAACGTGTCATCTTGCCATGATACTTCACATGAAGGCTTAAGGG
583 TCAAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCATGAAACTTCACATCAAGGCTTAAGGG
*
17869714 ACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTA
648 ACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTA
*
17869779 AACCCACCTACCATCCTAT
713 AACCCACCTACCACCCTAT
*
17869798 CGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCTCGTTTCGTCGGT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC-GCTCGTTTCGTCGGT
* * * * *
17869863 TGGCTTAGGCATACGGAGTTCATTCCCAGTATAAGCATATGGATTTCATTCCCAGTCTAAGATCA
65 TGACATAGGCATACGGAGTTCATTCCCAGTATAAGCATACGAAGTTCATTCCCAGTCTAAGATCA
* * * * * *
17869928 GACCGGATCGAGGGTTATGGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCGTATTTTTCTT
130 GACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCTAGTGCCGCATTTTTCTT
* *
17869993 CGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACTTGACCGGCGGCATTGGGGTTCCAACGAT
195 CGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCAACGAT
* *
17870058 C-GGGGAGCC-GGGGG-GTGCGCACATGATGTGCGATGGGT-CTAGTACTTGGCCTTTATATTGG
260 CGGGGGAGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGCACTTGGCCCTTATATTGG
* * * *
17870119 CCCCTTATCCCTCATCAAACCTCGAGAATTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGG
325 CCCCCTATCCCTCATCAAAACTCAAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGG
*
17870184 TTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCT
390 TTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* ** * *
17870249 TGTACACTTTGATTTTTTAGCTGAATTTTTTTAG-GCATGCCAACAAAAAATACAATGATCAAGT
455 TGTACACTTCGAGGTTTTAGCTGAATTGTTTT-GCGCATGCCAAC-AAAAATACAAGGATCAAGT
* * * *
17870313 CTACAAAGTTTGGGGCCAAAACTCGTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTT
518 CTACAAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTT
** *
17870378 TTGAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCATGAAACTTTACATCAAGGCTTAAGGG
583 TCAAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCATGAAACTTCACATCAAGGCTTAAGGG
* * * **
17870443 ACCGTTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTA
648 ACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTA
17870508 AACCCACCTACCACCCTAT
713 AACCCACCTACCACCCTAT
* * * * *
17870527 CGATCCACGGCTTGCGAATCTCATCTCT-TCAGCCGACGTAGTGCCCGCC
1 CGATCCACGGCTTGCGCATCCCGTCTCTCT-GGCCGGCGTAGTGCCCGCC
17870576 CGCCCGCCCG
Statistics
Matches: 695, Mismatches: 78, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
728 177 0.25
729 278 0.40
730 5 0.01
732 8 0.01
733 226 0.33
734 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (731 bp):
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCTCGTTTCGTCGGTT
GACATAGGCATACGGAGTTCATTCCCAGTATAAGCATACGAAGTTCATTCCCAGTCTAAGATCAG
ACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCTAGTGCCGCATTTTTCTTC
GTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCAACGATC
GGGGGAGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGCACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAAACTCAAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGT
TTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGGTTTTAGCTGAATTGTTTTGCGCATGCCAACAAAAATACAAGGATCAAGTCTA
CAAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCA
AAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCATGAAACTTCACATCAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTAT
Found at i:17870808 original size:26 final size:26
Alignment explanation
Indices: 17870772--17870846 Score: 132
Period size: 26 Copynumber: 2.9 Consensus size: 26
17870762 GTTGACTTAG
*
17870772 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17870798 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17870824 GCATACGGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATTCCCAGTC
17870847 CAAGATTGGA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17871733 original size:26 final size:26
Alignment explanation
Indices: 17871697--17871749 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17871687 GTTGACTTAG
17871697 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17871723 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17871749 G
1 G
17871750 ACCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17873814 original size:26 final size:26
Alignment explanation
Indices: 17873785--17873837 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17873775 GTTGACTTAG
17873785 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
17873811 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
17873837 G
1 G
17873838 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:17874717 original size:26 final size:26
Alignment explanation
Indices: 17874687--17874739 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17874677 GTTGACCTAG
17874687 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
**
17874713 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
17874739 G
1 G
17874740 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:17875559 original size:906 final size:902
Alignment explanation
Indices: 17873657--17879968 Score: 8232
Period size: 902 Copynumber: 7.0 Consensus size: 902
17873647 CGGAGAACCT
* * * * * *
17873657 GACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCATGCAGATGGGGACCCGACCGATACCCGG
1 GACCGAACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGG
* * * * * *
17873722 CTTGCGCATCCTGCCCTTTTGGCCGGCTGAGTGCCCGCACTCTAGTTTCGTGGGTTGACTTAGGC
66 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* ***
17873787 ATACGGAGTTCATTCCAAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCG
131 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* ** * * *
17873852 AGGATTGCGGCAGCACATGCTGGGCTCTAGCATGTGCTGGTACCGCATTTTTCTTCACCGGGGCA
196 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCA
* * * * **
17873917 CCATCGTCGGACCATCGCCGGGGAACCTGACCGACGGTATTGCGGTTCCGGTGATCGGGGGGGCC
261 CCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
* *
17873982 -AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATC
326 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
** * *
17874046 CCTTGTCAAACCTCAAGAACTCACACCCCCTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
391 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
17874111 AATAGCCATTAAAATGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTT
456 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
17874176 CGAGTTTCTGGCTGAATGTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTT
521 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * * *
17874241 GGGGCCAAAACT-CTTTCCGAAAAAA-TTTAAAAAATCACGAACTGCAAAAAGTTTTGAAAGTCA
586 GGGGCCAAAACTCCTTCCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCA
* *
17874304 TAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTAT
651 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
17874369 GAATTTACAGGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGCGCCTAAACCCACCTA
716 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * * *
17874434 TCACCCCATCGATCCACGGCTTGCACATCCCGTCTCTTTGGCCGACGTAGTG-CTCGGCCGCCCG
781 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCT-GCCCGCCCG
* * **
17874498 CCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTGCATTCCCAGTCTAAGATTG
845 CCCG--C-CTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * * *
17874559 GATCGGACTGAGGGTTGTGGTAGCAAGATCGGCAGCATGCAGAAGGGGACCCGACCGATCCCCGG
1 GACCGAACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGG
* * * * * * *
17874624 TTTGCGCATCCCGCCCCTTTTGTCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACCTAGGC
66 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
** * *
17874689 ATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
131 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* * * *
17874754 AGGGTTGCAGCAGCACATGCCGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCA
196 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCA
* ** * * *
17874819 CCATCGTCGGAGCATCGCCGAAGAACCCAACCGACGACATTAGGGTTCCGACGATCGGGGGGGTC
261 CCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
* ** * *
17874884 -AGACGGTGTGCACAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
326 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
17874948 CCTCATCAAACCTCGAGAGCTCACAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
391 CCTCATCAAACCTCGAGAACTCAC-ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
17875013 CAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTCTACACT
455 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
17875078 TTGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTT
520 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* **** * * *
17875143 TGGGGCCAAAAATCCTTCCCAAATTTTTTTTAAAAAATCTCGAGCCGAAAAAATGTTTCAAAAAT
585 TGGGGCCAAAACTCCTTCCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAA-GTTTTAAAAAT
* *
17875208 CATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGT
649 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * *
17875273 ATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACTCACC
714 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
*** * * * *
17875338 TACCACCCTATCGATCCATAACTTGCGCATCCCGTCTCTCTGACAGGTGTAGTGCCTGCCCGTCC
779 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCC
* * **
17875403 GCCCGCTCGATCGTTTCGTTAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATTG
844 GCCCGC-C--TCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * *
17875465 GACCGAACTGAGGGTTACGGCAGCAAGATCGACAGCACCCAGAAGGGAACCCGGCCGATCCTCGG
1 GACCGAACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGG
* * * *
17875530 CTTGCACATCCCGCCCCTCTGGCCGGCTGAACGCCCGCATGCTCGTTTCGTGGGTTGACCTAGGC
66 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
** * *
17875595 ATACAAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCT
131 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* * * * * * *
17875660 AGGGTTACGGTAGTACATGCTAGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGGAA
196 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCA
* * *
17875725 CCATCG-CTGGAGCATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGCGGGC
261 CCATCGTC-GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
* *
17875789 CGAGGGGGGTGTGCGCACAGGATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
325 CG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
17875854 TCCCTCATTAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTGACAGGTTTGCTG
389 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
17875919 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACGAAATCTTGTACAC
454 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
17875984 GTCGAGCTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
519 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
*
17876049 TTGGGGCCAAAACTCCTT-CCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAAT
584 TTGGGGCCAAAACTCCTTCCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAAT
*
17876113 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGT
649 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
17876178 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
714 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
** * *
17876243 TACCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCTGGCATA--G--T----GCCC
779 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCC
* *
17876300 GCCCG-CTCGTTTCGTC-GATTGGCTTAGGCATACAGAGTTCATTTCCAGTCTAAGATCA
844 GCCCGCCTCGTTTCGTCAG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * *
17876358 AACC-AGACTGAGGGTTACGGTAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCA
1 GACCGA-ACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCG
*
17876422 GCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
65 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * *
17876487 CATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
130 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* *
17876552 GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTCCTTCATCGGGGC
195 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGC
* * * * * **
17876617 ACCATCGTCGGAGCATCGCTGGAGAACCTGATCGGCAGCAATGGGGTTCCGGTGATC-GGGGGGC
260 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
* *
17876681 CGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTCGCCCTTATATTGGCCCCCTAT
325 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
17876746 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTATAGGTTTGTTGC
390 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * * *
17876811 CAGTAGCCATTAAAGTGTCTAAAATGGGGATACTTCTTTGAAATGGTTACAAAATCTTTGTACAC
455 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC-TTGTACAC
* * *
17876876 TTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGT
519 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * *
17876941 TTGGGGCCAAAACTCCTT-TCAAAAAAATTTTAAAAAAATCTCAAACCGTGAAAAGTTTCAAAAA
584 TTGGGGCCAAAACTCCTTCCCAAAAAAATTTT-AAAAAATCTCGAACCGTAAAAAGTTTTAAAAA
* * *
17877005 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAATGTGAAGGCTTAAGGGACCATTG
648 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
17877070 TATGAATTTACAAGTCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAC
713 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
*
17877135 CTA-CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGTC
778 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCC
* * *
17877195 CGCCCG-CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCCA
843 CGCCCGCCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-CA
* * * * ** *
17877255 -ACCGGATTGAGGGTTGCGGCAGCAGGATC-AGCAGCACGTAGAGGGGGACTCGGTCGATCCCCA
1 GACCGAACTGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * * * * *
17877318 GCTTGCGCATCTCGCCCTTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCATGAGTTGACTTAGG
65 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * *
17877383 CATACGGAGTTCATTCCCAGTCTAAGCGTACAGAGTTCATTCCCA-TGTAAGATCGGACCAGACC
130 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* ** *
17877447 GAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC--GG-
195 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGC
* *
17877509 ---A--GT---ATCAT---CGGAGAACCTGACC-AGCGGCATTGGGGTTCCGACGATCGAGGGGG
260 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGG
* * * *
17877562 TCGGGGGGGTGTGCGCACATGATTTGTGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTA
324 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * * *
17877627 TCCCTCACCAAACCTCGAGAACTTACACCTCTTTAAAGAGCCTTTGAGATTTTACAGGTTTGCTG
389 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
17877692 CCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAACTGGTCACAAAATCTTGCACAC
454 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
17877756 TTTGAGTTTTCAGCTGAATTTTTTTGTGCATGCAAACAAAAATACAAGGATCACGTCTACCATGT
519 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
17877821 TTGGGGCTAAAACTCCTT-CCAAAAAAAATTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAAT
584 TTGGGGCCAAAACTCCTTCCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAAT
* * * *
17877885 TATGAAAAATAAAAAACGAGTCGTCTTGCCATGACACTTCACGTGAAGGCTTCAGGGACCATTGT
649 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * *
17877950 ATGAATTTACAAGCCATGAAAATGGCATTGGCATGCAAAAATATAAAGATGTGCCTAAACCCACC
714 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * * * * * *
17878015 TACCGCCCTATCGATCCACGACTTTCACATCCCGTCTCTCTAGTCGGTGTAGTGCCCGCACGCCC
779 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCC
* * *
17878080 GTCCG-CTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTATGATCA
844 GCCCGCCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
** * * * ** * * * **
17878138 GAATGGACCGATGGTTGTTGCAGCAGGATC-AGCAACATGTAGAGGGGGACCCGGTCGATCCCCG
1 GACCGAACTGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * * * * * *
17878202 ACTTGAGTATCTCGCCCCTCTGGCCGGCTGAGCGCCCACACGATCGTTT-GATGGGTTGACTTAA
65 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG-TGGGTTGACTTAG
* * * * *
17878266 GCATACAGAGCTCATTCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGAC
129 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
** * *
17878331 CGAGGGTTGCGATAGCATATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
194 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGG
* * * * * * **
17878396 CAGCATCGCCGAAGCATCCCCGGAGAACCTGACCGACGGCATTGGGGTT-CTAGCTATCTAGGGG
259 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGG
* ** *
17878460 GCCGGGGGGGTGTGCGCACATAATGTGTAATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCT
323 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * * *
17878525 ATCCCTCTTCAAACCTCTAGAACTCACATCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGTT
388 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
17878590 GCCAGTAGCAATTAAAGTGTCT-AAATTGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
453 GCCAGTAGCCATTAAAGTGTCTGAAA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
17878654 AATTCGAGTTTTTA-CATGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCA
517 ACTTCGAGTTTTTAGC-TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * *
17878717 AGTTTTGGGCCAAAACTCCTT-CCGAAAAAATTTTAAAAAAATC-CTGAACCATAAAAAGTTTCA
581 AGTTTGGGGCCAAAACTCCTTCCCAAAAAAATTTT-AAAAAATCTC-GAACCGTAAAAAGTTTTA
* * *
17878780 AAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGTGACC
644 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
17878845 ATTGTATGAATTTACAAGCCATAAAAATCGCATTGTCACACAGAAATATGAAGATGTGCCTAAAC
709 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * *
17878910 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCACC-TCTATCTGGCCGACGTAGTGCCCGC
774 CCACCTACCACCCTATCGATCCACGGCTTGCGCATC-CCGTCTCTCTGGCCGGCGTAGTGCCTGC
* * * *
17878974 CCGCCCGTCCCCCCACTCATTTCGTCGGTTGGCTTAGGCATTCGGAGTTCATTCCCAGTCTAAGA
838 CCGCCCG--CCCGC-CTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
*
17879039 TTA
900 TCA
* * * *
17879042 GACTGAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGA
1 GACCGAACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGG
** * * *
17879107 CTTATGCATCCCGCCCCTTTGGCCGGCTGAGCG-CCTCACAG-TTGTTTCGTGGGTTGACTTAGG
66 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC-GCTCGTTTCGTGGGTTGACTTAGG
* * * *
17879170 CATACGGAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCGGACTAGATC
130 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * * ** *
17879235 GAGGGTTGCGGCAGCACATGCTGGGCTTGGGCACGTGTTGGTGCCGTATTTTTCTTCCCCGGGTC
195 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGC
* * * * *
17879300 ACCATCGCCGGAGCATCGCCGGATAACCTGACCGACGGCTTTGGGGTTCCGACGATCAGAGGGGC
260 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
* *
17879365 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGATACTTGGCCCTTATATTGGCCCCCTAT
325 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
17879430 CCCTCATCAAA-CTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGC
390 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
17879494 GAGTAGCCATTAAAGAGTCTGAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
455 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
17879559 TCGAGTTTTTAGATGAATTTTTTTGTACATGCCAAAAAAAATACAAGGATCACATCTACCAAGTT
520 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * ** * * * * *
17879624 TGGGGCCAGAACCCCTT-CTGAAAAAATTTTAAAAAATCTCAAACCGCAAAACGTTTTGAAAAGC
585 TGGGGCCAAAACTCCTTCCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATC
*
17879688 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTA
650 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * *
17879753 TGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGACGTGGCTAAACCCACCT
715 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
17879818 ACCACCCTATCGATCCATGGCTTACGCATTCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCACTTG
780 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTG-CC-C--G
* * * *
17879883 ACCGCCCG-CTCGTTTTGT-AGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATCG
841 CCCGCCCGCCTCGTTTCGTCA-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
*
17879944 GACC-AGACCGAGGGTTGCGGCAGCA
1 GACCGA-ACTGAGGGTTGCGGCAGCA
17879969 CATGCTGGGC
Statistics
Matches: 4740, Mismatches: 596, Indels: 148
0.86 0.11 0.03
Matches are distributed among these distances:
879 148 0.03
880 134 0.03
881 55 0.01
882 149 0.03
883 2 0.00
884 206 0.04
885 71 0.01
887 4 0.00
889 1 0.00
891 169 0.04
892 154 0.03
893 472 0.10
894 1 0.00
895 71 0.01
896 210 0.04
897 11 0.00
898 5 0.00
899 244 0.05
900 249 0.05
901 6 0.00
902 734 0.15
903 500 0.11
904 143 0.03
905 200 0.04
906 544 0.11
907 179 0.04
908 78 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GACCGAACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGG
CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCA
CCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCTTCCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCA
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGC
CCGCCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
Found at i:17875622 original size:26 final size:26
Alignment explanation
Indices: 17875593--17875645 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17875583 GTTGACCTAG
17875593 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
17875619 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
17875645 G
1 G
17875646 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:17876522 original size:26 final size:26
Alignment explanation
Indices: 17876486--17876538 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17876476 GTTGACTTAG
*
17876486 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
17876512 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
17876538 G
1 G
17876539 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:17878306 original size:26 final size:26
Alignment explanation
Indices: 17878263--17878318 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
17878253 TGGGTTGACT
17878263 TAAGCATACAGAGCTCATTCCCAATC
1 TAAGCATACAGAGCTCATTCCCAATC
* *
17878289 TAAGCATAC-GAAGTTCATTCCCAGTC
1 TAAGCATACAG-AGCTCATTCCCAATC
17878315 TAAG
1 TAAG
17878319 ATTGGACCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGCTCATTCCCAATC
Found at i:17879205 original size:26 final size:26
Alignment explanation
Indices: 17879169--17879221 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17879159 GTTGACTTAG
* *
17879169 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
17879195 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
17879221 G
1 G
17879222 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:17880783 original size:26 final size:26
Alignment explanation
Indices: 17880747--17880799 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17880737 GTTTACTTAG
*
17880747 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17880773 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17880799 G
1 G
17880800 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17883852 original size:880 final size:875
Alignment explanation
Indices: 17881464--17884026 Score: 3646
Period size: 880 Copynumber: 2.9 Consensus size: 875
17881454 CCCGCCCACC
* * * * * * ** *
17881464 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGTGTTCATTCCCAGTCTAAGATCAAACGGAACCG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACAG
* ** *
17881529 AGGGTTGCGGCCA-CACATGCTGGGCTCGGGCATGGGCT-GTGCTACATTTTTCTTCG-CTGGGG
66 AGGGTTGC-GACAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCACATTTTTCTTCGTC-GGGG
* *
17881591 CACCATCGTCGGAGCATCGCCGGAGCATCATCGGAGAACCTGATCGGCGGCATTGGGGTTCTGGC
129 ---CA----C----CATCGCCGGAGCATCACCGGAGAACCTGATCGGCGGCATTGGGGTTCCGGC
* * * *
17881656 GATCGGAGGGGCCAGGGGGGTGTGCGCTCATGATGTGCGATGCGTGCTGGTATTTGGCCCTTATA
183 GATCGG-GGGGGC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
17881721 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
246 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTA
* * *
17881786 CAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAA
310 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * *
17881851 ATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
375 ATCTTGTTCACCTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* * * * *
17881916 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAACATCTCGAACCGCAAAAGG
440 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACCGTAAAAAG
* * * *
17881981 TTTCAAAAATTGTGAAAAATA-AAAATGAGTCATC-TTGCGTGAAACTTCACGTGAAGGCTTAAT
505 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTTCCATGAAACTTCACGTGAAGGCTTAAT
* * *
17882044 GGACCATTTTGTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCC
570 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
*
17882109 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGC
635 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * *
17882174 CCGCCCGCCCGCCCACCGGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCT
700 CCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCT
** * ** * ** * * *
17882239 AAGATTGGATCAGACCGACGGTTATGGCAGCAGGATTGGCAGCACGCAGAGGGGGACTCGACTGA
765 AAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGAAAGCACGCAGAGGGGAACCCGACCGA
*
17882304 TCCCTAGCTTGTGCATCCCGCCCCTCTGGCTGGCTGAGCCCCCGCA
830 TCCCTAGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCA
* * *
17882350 CTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACAG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACAG
** * *
17882415 AGGGTTGCGGTAGCACATGCTGGGCTCGGGCTTTTGCTGGTGCCTCATTTTTCTTCGTCGGGGCA
66 AGGGTTGCGACAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
* * * * *
17882480 CCATCGTCGGAGCATCGCCAGAGAACCTGATCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCC
131 CCATCGCCGGAGCATCACCGGAGAACCTGATCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCG
*
17882545 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCC
196 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
17882610 TCATCAAACATCTAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
261 TCATCAAACCTCAAGAACTCAC-ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
17882675 TAGCCATTAAAGTGTCTAGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACCTCG
325 TAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACCTCG
* * * *
17882740 AGTTTTTAGCTGAATTTTTTGGTGCATGCCAATAAAAATGCAAGGATCACGTCTACCATGTTTGG
390 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * ** *
17882805 GGCCACAACTCGTTCCAAAAAAATTTTTAAAAATGTCAAACCGTAAAAAGTTTTGAAAATCGTGC
455 GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGA
* * *
17882870 AAAATAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTAGGAA
520 AAAATAGAAAACGAGTCATCTTTCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAA
* *
17882935 TTTAGAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
585 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * *
17883000 CCCTATCGATCCACGGCTTACGCATCCCATCTCTCTGGCCGGTGTAATGCCCGTCTGCTCGCCCG
650 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCG
* * * * *
17883065 CCCACTCGTTTGGTCGGTTTGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGAC
715 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGAC
* * *
17883130 CGAGGGTTGCGGTAGCAGGATCGAAATG-ACGTAGAGGGGAACCCGACCGAT-CCTCAGTTTGTG
780 CGAGGGTTGCGGCAGCAGGATCGAAA-GCACGCAGAGGGGAACCCGACCGATCCCT-AGCTTGTG
*
17883193 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
843 CATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCA
* *** *
17883226 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAATATCAGACTGGACCG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACAG
* * * * *
17883291 AGGGTTGCGACAGCACATGTTGGGCTCGGGCATTTGCTGGTGTCAGATTTTTTGTTTGTCGGGGC
66 AGGGTTGCGACAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCACA-TTTTTCTTCGTCGGGGC
* * * *
17883356 TACCGTTGCCGGAGCATCACCGGAGAACCTGATCGACGGCATTGGGGTTCCGACGATCGGGGGGG
130 -ACCATCGCCGGAGCATCACCGGAGAACCTGATCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
*
17883421 TCGGGGGGGTTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
194 -C-GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
17883486 ATCCCTCATCAAACCTCAAAAACTCACACCCCTTAGAGAGCATTTGAGATTTTACAGGTTTGCTC
256 ATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
17883551 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCAC
321 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCAC
* *
17883616 CTCAAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
386 CTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
17883681 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATC
451 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATC
* * *
17883746 ATGAAAAATAGAAAACGAGTCGTCTTTCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
516 GTGAAAAATAGAAAACGAGTCATCTTTCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTA
** * *
17883811 TGAATTTACAAGCCATAAAAATGGTGTTGGCATGTAGAAATATGAAGACGTGCCTAAACCCACCT
581 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* *
17883876 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCGCGCCTGCCCG
646 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCG
* * *
17883941 CCCGCCCGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCCTTCCTAGTCTAAGATCAGACC
711 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATC
17884006 AGACCGAGGGTTGCGGCAGCA
776 AGACCGAGGGTTGCGGCAGCA
17884027 CATGCTGGGC
Statistics
Matches: 1488, Mismatches: 176, Indels: 32
0.88 0.10 0.02
Matches are distributed among these distances:
874 298 0.20
875 19 0.01
876 437 0.29
877 16 0.01
878 56 0.04
879 1 0.00
880 474 0.32
881 77 0.05
884 2 0.00
885 2 0.00
886 85 0.06
887 20 0.01
888 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (875 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACAG
AGGGTTGCGACAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
CCATCGCCGGAGCATCACCGGAGAACCTGATCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCG
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACCTCGA
GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAA
AAATAGAAAACGAGTCATCTTTCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGC
CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACC
GAGGGTTGCGGCAGCAGGATCGAAAGCACGCAGAGGGGAACCCGACCGATCCCTAGCTTGTGCAT
CCCGCCCCTCTGGCCGGCTGAGCCCCCGCA
Found at i:17885264 original size:891 final size:891
Alignment explanation
Indices: 17883971--17890175 Score: 5946
Period size: 891 Copynumber: 6.8 Consensus size: 891
17883961 GTTGGCTTAG
* * * *
17883971 GCATACGGAGTTCCTTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT-GG
17884036 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTGGAGCATGTCGGAGAAC
65 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG---CATC---GAGCA--TCGGAGAAC
* * *
17884101 CTAATCGGCGGCATTGGGGTTCCGACGATTGGGGGGGTCGGGGGGGTGTGCACACATGATGTGCA
122 CTGATCGGCGGCATTGGGGTTCCGACGATTGGGGGGGTC-GGGGGGTGTGCGCACATGATGTGCG
* ** *
17884166 ATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATTTAACCTCAAGAACTCACAC
186 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * * *
17884231 CCCCTTAAAAAGTATTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATAG
251 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
17884296 GGACAC-TTTTTCAAATGGTCACAGAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
316 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *** * *
17884360 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTACAGGGCAAAAACTCCTTCCGAAAAAAT
381 CATG-CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
*
17884425 TTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
445 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
17884490 CATGAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATC
510 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
17884555 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGCGCA
575 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
17884620 TCCCATCTCTCTGGCTGGCGTAGTGCCCGCCTGCTCGCCTGCCCACTTGTTTCGTCGGTTGGCTT
640 TCCCATCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * ** * * *
17884685 AGGCATACGTAGTTCATTCCTAGTCTAAGATTGAACTGGA-CTAAGGGTTGCGGCAGCAGAATCG
705 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGATC-GAGGGTTACGGCAGCAGGATCG
* * * * * * ** *
17884749 GCAGCACGCAGAAGGGGACCCGGTTGATCCCCGACATACGCATCGTGCCCCACTGGCCGGCTGAA
769 GTAGCACGCAGAAGGGGACCCGATCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAA
* *
17884814 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
834 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
17884872 GCATATGGAGTTCATTCCCATTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT-GG
*
17884937 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCATC-ATCATCGGAGAACCTGATCGG
65 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCATCGAGCATCGGAGAACCTGATCGG
* * *
17885001 CGGCATTAGGGTTCCAACGATTGGGGGGGTCGGGGGGTGTGCGCAGATGATGTGCGATGGGTGCT
130 CGGCATTGGGGTTCCGACGATTGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
17885066 GGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCACCTGAAA
195 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
17885131 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
17885196 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCTAAA
325 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC-AAA
* * *
17885261 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACCCCTTTTGAAAAAATTTTAAAAAA
389 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAA
*
17885326 TCTCC-AACCGC-AAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAAC
454 TC-CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
17885389 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
518 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * * *
17885454 AAAATATGAAGAGGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCT
583 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCT
* * * * * * *
17885519 TTTTGGCCGGCGTAGTGCCCGCCCGCCCGTCTGCTCGTTCGTTTCGTCGGTTGGCTTAGGCATAC
648 CTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* ** * * *
17885584 GGAGTGCATTCCCAGTCTAAGATTGAACTGGATCGAGGGTTACAGTAGTAGGATCGGTAGCACGC
713 GGAGTTCATTCCCAGTCTAAGATTGAACCAGATCGAGGGTTACGGCAGCAGGATCGGTAGCACGC
** * * * *** * *
17885649 AGAAGATGACCCGA-CTGATCCCCGGCATATGCATCACGCCCCACTGGCCGGCTGAGTACCAGTA
778 AGAAGGGGACCCGATC-GATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCA
* *
17885713 CGCTCATTTCGTGGGTTGACTCAGGCATACGGAGTTCATTCCCAGTCTAA
842 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
17885763 GCATACGAAGTTCATTCCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAA-GAT-C-G-G---A----C---C---G---G-ACC-GA-
* * * **
17885828 CGAAGGTTACGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCACCGGGG
43 -G--GGTTGCGGCAGCACATGCT-GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
* * * * * * ** * *
17885893 CACCATCGTCGGAGCATCGTCAGAGAACCTGACCGACGACAATGGGGTTCTGACGATCGAAGAGC
104 ---CA---TC-GAGCATCG---GAGAACCTGATCGGCGGCATTGGGGTTCCGACGATTGGGGGGG
* *
17885958 T-GGGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTAT
159 TCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
17886022 CCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
224 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
** * *
17886087 CAGTAGCCATTAAAGTGTCTGAAATGAAGACACTTTCTTCAAATGGTCACAAAATCTTGTACAGT
289 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
17886152 TCGAGTTTTT-GGTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
354 TCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CAAAAAAAATACAAGGATCACGTCTACCAAGTT
* *
17886216 TGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAATCGCAAAAAGTTTCAAAAATCA
418 TGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* * *
17886281 TGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTTT
483 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
17886346 AAATTT---A--C-----AA--G--TTGGCACGCAGAAATAAGAAGATGTGCCTAAACCCACCTA
548 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
17886397 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGTCCGC
613 CCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGC
** * * * * * *
17886462 CCATCCGCTCGTTTTGTCGATTGGCTCATGAATACGGAGTTCATTCCCAGTCTAAGA-TCAGACC
678 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGA-ACC
* * * * ** * * * * * *
17886526 ACACCAAGGGTTACGGCAGTAGGATCGACAGCATGTAGATGGGGACCCGGTCGATCCTCGGCTTG
742 AGATCGAGGGTTACGGCAGCAGGATCGGTAGCACGCAGAAGGGGACCCGATCGATCCCCGGCTTA
* * *
17886591 TGCATCCCGCCCCTCTGGTCGGCT-AAGCGCTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATA
807 TGCATCCCGCCCCTCTGGCCGGCTGAA-CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
** *
17886655 CCAAGTTCTTTCCCAGTCTAA
871 CGGAGTTCATTCCCAGTCTAA
* * * * ** **
17886676 CCATACGGAGTTCATTGCCAGTCTAAGATCGGACCAGACC-ATGGGTTACAACAGCACATTTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA-GGGTTGCGGCAGCACATGCTGG
* * * * *
17886740 GTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCTCCGAAGCATTGTTGAAGA
65 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG---CA--T-CG-AGCATCG--G-AGA
* * *
17886805 ACCTGACCGGCGG-ATTTGGGGTTCCGGCGA-TCGGGGGGTCGGGGGGGTGTGCGCACATGATGT
120 ACCTGATCGGCGGCA-TTGGGGTTCCGACGATTGGGGGGGTC-GGGGGGTGTGCGCACATGATGT
* *
17886868 GCGATGGCTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
17886933 CACCCTCTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
17886998 TGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTACCT-AATTTTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
* * * * ** * *
17887062 TATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGACTGAAACACCTTTCAAAA
377 TGTGCATG-CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * ** *
17887127 AAATTTTAAAAAAATCCCAAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGT
441 AAATTTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
17887192 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATG
505 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
17887257 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCCACGGCTT
570 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * * * *
17887322 GTACATCCCGTCTCTCTGG-TCGGCGTAGTGCCCGCCCACCCACCCGCCCGCCCGTTTCGTCGAT
635 GCGCATCCCATCTCTCTGGCT-GGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * * *
17887386 TGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGA-TCAGACCGGATCGAGGGTTGCAGCAGTA
699 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGA-ACCAGATCGAGGGTTACGGCAGCA
* * * * *
17887450 GGATCGGTAGAACGCA-AAGGGGGACCCGATCGATCCTCGGCTTGTGCATCCTGCCCCTCTGGCT
763 GGATCGGTAGCACGCAGAA-GGGGACCCGATCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCC
* *
17887514 GGCTTGAAGCGCCCACACGCTCATTTCGTGGGTTGGACTTAAGGCATACGGAGTTTCATTCCCGA
827 GGC-TGAA-CGCCCGCACGCTCGTTTCGTGGGTT-GACTT-AGGCATACGGAG-TTCATTCCC-A
*
17887579 GCCTAA
886 GTCTAA
*
17887585 GCATACGGAGTTCATTTCCCAGTCTAAGATCGGAACCGGACCG-GGGTTGCGACAGCACATGCTG
1 GCATACGGAGTTCA-TTCCCAGTCTAAGATCGG-ACCGGACCGAGGGTTGCGGCAGCACATGCTG
* * * * * *
17887649 GAT-GGG-ATGTGCTGGTGTCGTATTTTCTCGTCAGGGCACCCATCGTCGGGAAGCGATCATCGG
64 GCTCGGGCATGTGCTGGTGCCGTATTTT-TCTTC---G------TCG--GGGCATCGAGCATCGG
* ** * * * *
17887712 AGAATCTGATCGATAGGACATTGGGGTTCACG-GGA-TCGGGGGGCCGAGTGGGGTAGTGAGCAC
117 AGAACCTGATCG-GCGG-CATTGGGGTTC-CGACGATTGGGGGGGTCG-G-GGGGT-GTGCGCAC
* * * *
17887775 ATGATGTACGATTGGTG-TGGTACTTGGCCCTAAT-TTGGCCCCCT-TCCCTCATTAAACCTCGA
176 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
17887837 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCATTAAAGTG
241 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
17887902 TCTGAAATGGGGAGACTTTTTTCAAATGGTCACAAAATCTTGTACACTGT-GAGTTTTTCA-TTA
306 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTT-AGCTG
*
17887965 AATTTTTTTGTGCATGCCAACAAAAAA-ACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTC
369 AATTTTTTTGTGCATG-CAA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* ** * * * *
17888029 CTTTCGAACAAATTTT-AAAAATCCCGAACCATAAAAAGTTTTAAAAATCTTGAAAGATGGAAAA
432 CTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* ** * *
17888093 CGAGTCATCTTGCCGCGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCG
497 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
17888158 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
562 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * ** *
17888223 CACGGCTTGCGCATCCCCTCTCTCTGGCTAGCGTTGTGCCCACCTACCCGCCCGACCGCTCGTTT
627 CACGGCTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTT
* * * *
17888288 CGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATGGAGGGTTACG
692 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGATCGAGGGTTACG
* * * * * *
17888353 GTAGCAAGATCAGAAGCACACA-AAGAGGGACCCGACCGATCCCCGG-TTGA-GCATCCCGCCCC
757 GCAGCAGGATCGGTAGCACGCAGAAG-GGGACCCGATCGATCCCCGGCTT-ATGCATCCCGCCCC
* * * * * *
17888415 TCTGGTCAGCTGAGCGCCCGTACGATCGTTTTCGTGGGTTGACTT-GGCATATGGAGTTCATTCC
820 TCTGGCCGGCTGAACGCCCGCACGCTCG-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
*
17888479 TAGTCTAA
884 CAGTCTAA
* ** ** * * *
17888487 GATCAGACCGGA-TGGAGGGTTGTGGCAG--TAGGATTGCCAGCACGCAGGGGGGACCCG-GCCA
1 G--CATA-CGGAGTTCA----T-TCCCAGTCTAAGA-T--C-GGAC-C-----GGA-CCGAG--G
* * * * * * * ** * *** *
17888548 ATCTCCGGCTTGCACATCCCGCCCCTCTGGC-TG-GCTGAGCACACGCA-CGATCATTTCAT-GG
45 GT-TGCGGC-AGCACATGCTG--GCTCGGGCATGTGCTG-GTGC-CGTATTTTTC--TTCGTCGG
* * * ** *** * *
17888609 GTTGACTTAG-GCATACGGAGTTCATTCCCAATC-TAAGCATATGGAGTTCATTCTCAGTCTAAG
102 G--G-CATCGAGCAT-CGGAG---A-ACCTGATCGGCGGCAT-TGG-G---GTTC-C-G---ACG
* **** ** ** * ** * * * * *
17888672 ATCAGACCAGACCAAGGGATGCAACAGCACATGCTGGGCTAGGGCATGTGCTGGTGCCACATT-T
149 AT-TGGGGGGGTCGGGGGGTG-TGC-GCACATGATGTGCGATGG---GTGCTGGT---AC-TTGG
** *** * * ** *
17888736 TTCTTCATCGGGGCACCATCATCGGAGTATCACCGGAGAACCTGACCGGTGCCATTGGGGTTCTG
204 CCCTT-ATATTGGCCCCCT-ATC----CCTCATC--A-AACCT---C---G--A-----------
* ** * ** * * * * * ** * *
17888801 GAGA-TCAGACGGGCC-GAAAG-GGGTGTGCGCACATGATGTGCGATGG-GTGCTGGTACTTGGA
241 GA-ACTCACAC-CCCCTTAAAGAGCAT-T-TG-AGAT--TTTAC-A-GGTTTGCTGCCA-GTAG-
*
17888862 CC-TTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
295 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * * *
17888926 TTTTAGCGGAATATTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTAGGGC
360 TTTTAGCTGAATTTTTTTGTGCATG-CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
17888991 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAACGTTTTC-AAAATCGTGAAA
424 CAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG-TTTCAAAAATCATGAAA
* * * *
17889055 AATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACAATCGTATGAATT
488 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
17889120 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
553 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
17889185 CTATCGATCCATGGCTTGCCCAT-CCAGTCTCTCTGG-TCGACGTAGT--------GCCCGCCCG
618 CTATCGATCCACGGCTTGCGCATCCCA-TCTCTCTGGCT-GGCGTAGTGCCCGCCCGCCCGCCCG
* * * *
17889240 CCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
681 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGAT
** * ** * **
17889305 CGAGGGTTGTGGCAGCAGGATCGGTAGCACGTAGGGGGGGACCCGGTCGATCCCCGGCTTACACA
746 CGAGGGTTACGGCAGCAGGATCGGTAGCACGCAGAAGGGGACCCGATCGATCCCCGGCTTATGCA
* * * * * * * *
17889370 TCCCACCCCTCTGGCCAGCTGAGCGCCTGCACGCTTGTTTCATGGGTTGAATTAGGCATATGGAG
811 TCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
17889435 TTCATTCCCAGTCTAA
876 TTCATTCCCAGTCTAA
* * * * * * *
17889451 GCATACGGAGTTCATTCCCCGTCTAATATCAGACCAGACCGAGGGTTGCAGCGGCACAAGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG-
* * * ** * * *
17889516 ATCAGGCATGTG-TCGGAGCCACATTTTTCTTCGTCGGGGCA-CCATCGTCGGAGAACCTGATCG
65 CTCGGGCATGTGCT-GGTGCCGTATTTTTCTTCGTCGGGGCATCGAGCATCGGAGAACCTGATCG
* *
17889579 ACGGCATTGGGGTTCCGGCGATTGGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
129 GCGGCATTGGGGTTCCGACGATT-GGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
17889644 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCCAGAACTCACACCCCCTTA
193 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * ** *
17889709 AAGAGAATTTGAGATTTTACAGGTTTGTTGCCATTAGCCATTAAAGTGTCCAAAATGGGGAGACT
258 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
17889774 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCC
323 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATG-C
* * *
17889839 AAAAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAA
386 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
* * * **
17889904 AAATCTCGAACTGTAAAAA-TTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
451 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
17889968 ACTTCACGTGAAGGCTTAAGGGAACATTATATGAATTTACAAGCCATAAAAATGGCATTGGGACA
516 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* *
17890033 CAGAAACATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCAT
581 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCAT
* * * *
17890098 CTCACTGGCCGACGTAGT------------GCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCAT
646 CTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
17890151 ACGGAGTTCATTCCCAGTCTAAGAT
711 ACGGAGTTCATTCCCAGTCTAAGAT
17890176 CGGATCAGAC
Statistics
Matches: 4396, Mismatches: 663, Indels: 510
0.79 0.12 0.09
Matches are distributed among these distances:
881 58 0.01
884 5 0.00
885 247 0.06
886 174 0.04
887 210 0.05
888 71 0.02
889 102 0.02
890 5 0.00
891 559 0.13
892 181 0.04
893 4 0.00
894 5 0.00
895 1 0.00
898 5 0.00
899 3 0.00
901 96 0.02
902 11 0.00
903 228 0.05
904 16 0.00
905 29 0.01
906 25 0.01
907 28 0.01
908 52 0.01
909 333 0.08
910 55 0.01
911 209 0.05
912 50 0.01
913 315 0.07
914 29 0.01
915 12 0.00
916 7 0.00
917 66 0.02
918 15 0.00
919 13 0.00
920 13 0.00
921 4 0.00
922 17 0.00
923 7 0.00
924 6 0.00
925 23 0.01
926 98 0.02
927 298 0.07
928 35 0.01
930 4 0.00
931 5 0.00
932 3 0.00
934 4 0.00
935 5 0.00
936 14 0.00
937 5 0.00
938 2 0.00
940 5 0.00
941 3 0.00
942 4 0.00
943 4 0.00
944 12 0.00
945 19 0.00
946 6 0.00
947 1 0.00
948 4 0.00
949 3 0.00
951 1 0.00
953 1 0.00
954 1 0.00
955 2 0.00
956 1 0.00
957 3 0.00
958 2 0.00
959 3 0.00
961 4 0.00
962 5 0.00
963 128 0.03
964 75 0.02
965 4 0.00
966 3 0.00
968 3 0.00
969 14 0.00
970 135 0.03
971 185 0.04
972 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGC
TCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCATCGAGCATCGGAGAACCTGATCGGC
GGCATTGGGGTTCCGACGATTGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAAAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATC
CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTC
TGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATTGAACCAGATCGAGGGTTACGGCAGCAGGATCGGTAGCACGCAGA
AGGGGACCCGATCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17885766 original size:26 final size:26
Alignment explanation
Indices: 17885737--17885815 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
17885727 GTTGACTCAG
17885737 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17885763 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17885789 CCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17885815 G
1 G
17885816 ATCGAACCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17887603 original size:28 final size:27
Alignment explanation
Indices: 17887557--17887612 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 27
17887547 TGGACTTAAG
17887557 GCATACGGAGTTTCATTCCCGAGCCTAA
1 GCATACGGAGTTTCATTCCC-AGCCTAA
*
17887585 GCATACGGAG-TTCATTTCCCAGTCTAA
1 GCATACGGAGTTTCA-TTCCCAGCCTAA
17887612 G
1 G
17887613 ATCGGAACCG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 11 0.42
28 15 0.58
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (27 bp):
GCATACGGAGTTTCATTCCCAGCCTAA
Found at i:17888566 original size:158 final size:158
Alignment explanation
Indices: 17888285--17888645 Score: 399
Period size: 158 Copynumber: 2.3 Consensus size: 158
17888275 CGACCGCTCG
* * * *
17888285 TTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATGGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATGGAGGGTT
* *
17888350 ACGGTAGCAAGATCAGAAGCACACAAAGAGGGACCCGACCGATCCCCGGTTGAGCATCCCGCCCC
66 ACGGCAGCAAGATCAGAAGCACACAAAGAGGGACCCGACCAATCCCCGGTTGAGCATCCCGCCCC
* * * *
17888415 TCTGG-TCAGCTGAGCGCCCGTACGATCGT
131 TCTGGCT-AGCTGAGCACACGCACGATC-A
* * *
17888444 TTTCGTGGGTTGACTT-GGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGATGGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATGGAGGGTT
** * * * * * * * * *
17888508 GTGGCAGTAGGAT-TGCCAGCACGC-AGGGGGGACCCGGCCAATCTCCGGCTTGCA-CATCCCGC
66 ACGGCAGCAAGATCAG-AAGCACACAAAGAGGGACCCGACCAATCCCCGG-TTG-AGCATCCCGC
*
17888570 CCCTCTGGCTGGCTGAGCACACGCACGATCA
128 CCCTCTGGCTAGCTGAGCACACGCACGATCA
* *
17888601 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
17888646 CATATGGAGT
Statistics
Matches: 168, Mismatches: 29, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
157 35 0.21
158 117 0.70
159 16 0.10
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATGGAGGGTT
ACGGCAGCAAGATCAGAAGCACACAAAGAGGGACCCGACCAATCCCCGGTTGAGCATCCCGCCCC
TCTGGCTAGCTGAGCACACGCACGATCA
Found at i:17888649 original size:26 final size:26
Alignment explanation
Indices: 17888619--17888671 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17888609 GTTGACTTAG
17888619 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* * *
17888645 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17888671 G
1 G
17888672 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17889455 original size:26 final size:26
Alignment explanation
Indices: 17889425--17889476 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17889415 GTTGAATTAG
*
17889425 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17889451 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17889477 TATCAGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17892357 original size:714 final size:713
Alignment explanation
Indices: 17890992--17892494 Score: 2106
Period size: 714 Copynumber: 2.1 Consensus size: 713
17890982 GCCGACTGAG
* * * * * * *
17890992 CGCCCGCACGCTCGTTCCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGGTCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
** * * *
17891057 -TCGGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAATTTTCTTC
66 CTCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTAGTGCCGCAATTTTCTTC
* * * * * *
17891121 GTCGGGGCACCATCGTCGGAGCAACGCCGGAGAGCCTGACCGGCGGCTTTGGGGTTCCGACGTTA
131 ATCGGGGCACCATCATCGGAGCAACACCGGAGAACCTGACCGACGGCTTTGGGGTTCCGACGATA
* * * *
17891186 TGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGTGGGTACTTGGCCCTTATATTGGC
196 GGGGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGGGTGGGTACTTGGCCCTCATATTGGC
* *
17891251 CCCCTATTCCTCAACAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTACAAGTT
261 CCCCTATCCCTCAACAAACCTCGAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTACAAGTT
*
17891316 TGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAAGGGTCACAAAATCTTG
326 TGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAGGGTCACAAAATCTTG
* * * * *
17891381 TACACTTCGAGTTTTTAGCTGATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACC
391 TACACTTCAAGTTGTCAGCTGATATTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACC
* * **
17891446 AAGTTTGGGGCCAAAACTCCTTTCGAAAAAACTTTAAAAAATACCAAACGACAAAACGTTTTGAA
456 AAGTTTGGGGCCAAAACTCCTTTCGAAAAAACTTTAAAAAATACCAAACCACAAAAAGTTTCAAA
* * *
17891511 TATCATGAAAAAGAGAAAACAAGTCATCGTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
521 AATCATGAAAAAGAAAAAACAAGTCATCGTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCAT
17891576 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGACTAAACCC
586 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGACTAAACCC
* * * *
17891641 ACCTA-CACCCTATCGATCAACGGCTTGCGCATCCTATCTCTCTGG-CAG-GCATAGTGCCCGTC
651 ACCTACCACCCTATCGATCAACGGCTTGCACATACTATCTCTCGGGCCAGTG--TAGTGCCCGCC
*
17891703 CGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * *
17891768 CT-GGACCGAGGGTTGCGACAGCACATGCTGGGCTTGAGCATGTGCTAGTGCCGCATTTTTCTTC
66 CTCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTAGTGCCGCAATTTTCTTC
* * * * *
17891832 ATCGGGGCACTATCATCGGAGCATCATCGGAGAACCTGACCGACGGCTTTGGGGTTCTGACGATC
131 ATCGGGGCACCATCATCGGAGCAACACCGGAGAACCTGACCGACGGCTTTGGGGTTCCGACGATA
* * *
17891897 GGGGGGGTCGAGGGGGCTGTGTGCACATGATGTACGATGGGGGTTGGTACTTGG-CCTCATATTG
196 GGGGGGGCCG-GGGGG-TGTGCGCACATGATGTACGATGGGGGTGGGTACTTGGCCCTCATATTG
* * *
17891961 GCCCCCTATCCCTCATCAAACCTTGAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
259 GCCCCCTATCCCTCAACAAACCTCGAGAACCCACACCCCCTTAAAGAGCATTTGAGA-TTTACAA
* ** *
17892026 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTTGGACACTTTTTTCAAATGGTCACAAAATC
323 GTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAGGGTCACAAAATC
* * *
17892091 TTGTGCACTTCAAGTTGTCAGCTGAATATTTTTATGCATGCCAACAAAAATGA-AAGGATTACGT
388 TTGTACACTTCAAGTTGTCAGCTG-ATATTTTTATGCATGCCAACAAAAAT-ACAAGGATCACAT
* * * * * *
17892155 CTACCAAGTTTGGGGCCAAAACTGCTTTGGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTT
451 CTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAACTTTAAAAAATACCAAACCACAAAAAGTT
* * * * *
17892220 TCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGG
516 TCAAAAATCATGAAAAAGAAAAAACAAGTCATCGTGCCATGAAACTTCACGTGAAGGCTTAAAGG
*** *
17892285 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTTA-AAATATGAAGATGTGCCT
581 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CACAGAAATATGAAGATGTGACT
* *
17892349 AAACCCACCTACCACCCTATCGATCCACGGCTTGCACATACTGTCTCTCGGGCCAGTGTAGTGCC
645 AAACCCACCTACCACCCTATCGATCAACGGCTTGCACATACTATCTCTCGGGCCAGTGTAGTGCC
*
17892414 GGCC
710 CGCC
* * *
17892418 CGCCTGCCCGCTCTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
*
17892483 C-CAGACCAAGGG
66 CTCGGACCAAGGG
17892495 CTGCAGCTGC
Statistics
Matches: 694, Mismatches: 87, Indels: 18
0.87 0.11 0.02
Matches are distributed among these distances:
711 173 0.25
712 68 0.10
713 119 0.17
714 214 0.31
715 116 0.17
716 3 0.00
717 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (713 bp):
CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CTCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTAGTGCCGCAATTTTCTTC
ATCGGGGCACCATCATCGGAGCAACACCGGAGAACCTGACCGACGGCTTTGGGGTTCCGACGATA
GGGGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGGGTGGGTACTTGGCCCTCATATTGGC
CCCCTATCCCTCAACAAACCTCGAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTACAAGTT
TGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAGGGTCACAAAATCTTG
TACACTTCAAGTTGTCAGCTGATATTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACC
AAGTTTGGGGCCAAAACTCCTTTCGAAAAAACTTTAAAAAATACCAAACCACAAAAAGTTTCAAA
AATCATGAAAAAGAAAAAACAAGTCATCGTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGACTAAACCC
ACCTACCACCCTATCGATCAACGGCTTGCACATACTATCTCTCGGGCCAGTGTAGTGCCCGCC
Found at i:17892638 original size:26 final size:26
Alignment explanation
Indices: 17892609--17892661 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17892599 GTTGACTTAG
*
17892609 GCATAC-GAAGTTTATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
17892635 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17892661 G
1 G
17892662 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17895227 original size:709 final size:707
Alignment explanation
Indices: 17894130--17896382 Score: 3145
Period size: 719 Copynumber: 3.2 Consensus size: 707
17894120 GGGGACCCGG
* * * * *
17894130 TCGATCCCCGACATGCGCATCCCGCCCCTCTGGTCGGC-TGAGTGCCCG-C-A--CACTCGTTTC
1 TCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGT-AGTGCCCGCCGACCCACTCGTTTC
* * *
17894190 GT-GGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCG
65 GTCGG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG
* * * * *
17894254 GCAGCACATTCTAGGCTCGAGCATGTGCTGGTACCGTATTTTTCTTCGTCGGTGGAC-CATCGTC
129 GCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG-C--CGGACACATCGCC
* * ** *
17894318 GGAGCATCGCCGGAGAACCTAACCGGCGGTGTTGGGGTTCCAGCGATCGAGGGGGCCGGGGGGGT
191 GGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGG-CGGGGGGGT
* *
17894383 GTACTCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCA
254 GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCA
** * * *
17894448 AACCTCGAGAACTCACACCTACTTAACGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCTA
319 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
17894513 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTT
384 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
17894578 TAGCTG-ATATTTTTTGTGCATGCCAAGAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
449 TAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * *
17894642 GAATTCC-TCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
513 AAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
*
17894706 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTAC
578 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
17894771 AAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
643 AAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
**
17894836 TCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGACCCACTTATTTCG
1 TCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGACCCACTCGTTTCG
* * *
17894901 TCGGTTGGCTTAGGCATACGGAGTTTATTCCCATTCTAAGATTGGACCGGACCGAGGGTTGCGGC
66 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGC
* * *
17894966 AGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGCCGCGACAACATCGCCTGA
131 AGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCG-GAC-ACATCGCCGGA
* *
17895031 GCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCAATCGGGGGGTCGGGGGGGTGTGC
194 GCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG-CGGGGGGGTGTGC
* * * *
17895096 ACACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTGTATTGGCCCCCTATCCCTCCTCAAACC
258 ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACC
*
17895161 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
323 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
17895226 AGTGTTTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGC
388 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
17895291 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
453 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * *
17895356 CCTTCCAAAAAAATTAAAAAAAATCCCGAACCGCAAGAGGTTTCAAAAATCATGAAAAATAGAAA
518 CCTTCCGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * * * *
17895421 ATGAGTCGTCTTACAATGAAACTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTTTTTAAAA
583 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA---TTTACAA
17895486 GCCATAAAAATGGCATTGGC--GCAAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
645 GCCATAAAAATGGCATTGGCAAGC--AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * ** * *
17895549 TCGATCCATGGCTTGCGCATCCCGTCTCTCT-GTTGGCATAGTGCCCACCCACCTGCCCG-CCCG
1 TCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG------C-CC-G-CCGACCCA
* * * * *
17895612 CTCGTTTCATCGGTTGGCTTAGCCATACGGAGGTCATTCCCACTCTAAGATCGGACCGAACCGAG
57 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* ** * * *
17895677 GGTTACGGTGGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACC
122 GGTTGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCC-GGACA-C
* * *
17895742 ATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGTTCGGGGGGC-CGG
185 ATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCGGGG
* * * * * *
17895806 GGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCATTATATTGGCCCCCCTTTCCTT
250 GGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCAT
17895871 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
314 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
17895936 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGA
379 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
*
17896001 GCTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
444 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
17896066 GCCAAAACGCCTTCCGAAAAAATTTCAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAA
509 GCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAA
*
17896131 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAAT
574 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
17896196 TTACAAGCCATAAAAATGGCATTGCCACA-CAAAAATATGAAGATGTGCCTAAACCCAACTACCA
639 TTACAAGCCATAAAAATGGCATTGGCA-AGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
17896260 CCCTA
703 CCCTA
* * * * * *
17896265 TCGATCCACTG-CTTGCGTATCACGTCTCTCTAGCCGACGTAGTGCCCGCCGGCCCGCTCGTTAT
1 TCGATCCAC-GACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGACCCACTCGTT-T
* * *
17896329 -GTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACC
64 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
17896383 AAGCGGTGCG
Statistics
Matches: 1372, Mismatches: 140, Indels: 67
0.87 0.09 0.04
Matches are distributed among these distances:
706 41 0.03
707 3 0.00
708 7 0.01
709 315 0.23
710 262 0.19
711 5 0.00
712 9 0.01
713 93 0.07
716 89 0.06
717 9 0.01
718 50 0.04
719 317 0.23
720 168 0.12
721 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (707 bp):
TCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGACCCACTCGTTTCG
TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGC
AGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGACACATCGCCGGAGC
ATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCGGGGGGGTGTGCACA
CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCG
AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
TCCGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
Found at i:17896028 original size:719 final size:708
Alignment explanation
Indices: 17894172--17896382 Score: 3123
Period size: 709 Copynumber: 3.1 Consensus size: 708
17894162 GTCGGCTGAG
* * * *
17894172 TGCCCGCACACTCGTTTCGT-GGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
1 TGCCCGCCCACTCGTTTCGTCGG-TTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGATCGG
* * * *
17894236 ACCGGACTGAGGGTTGCGGCAGCACATTCTAGGCTCGAGCATGTGCTGGTACCGTATTTTTCTTC
65 ACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * * **
17894301 GTCGGTGGACCATCGTCGGAGCATCGCCGGAGAACCTAACCGGCGGTGTTGGGGTTCC-AGCGAT
130 GCCGG-GCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGAT
* *
17894365 CGAGGGGGCCGGGGGGGTGTACTCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
193 CG-GGGGGCC--GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
** * *
17894430 GCCCCCTATCCATCATCAAACCTCGAGAACTCACACCTACTTAACGAGCATTTGAGATTTTATAG
255 GCCCCCTATCCATCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
17894495 GTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATC
320 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
17894560 TTGTACACTTCGAGTTTTTAGCTG-ATATTTTTTGTGCATGCCAAGAAAAATACAAGGATCATGT
385 TTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * * *
17894624 CTACCAAGTTTGGGGCCAGAATTCC-TCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTT
449 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTT
*
17894688 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGG
514 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
17894753 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-G-GCAAGCAGAAATATGAAGATGTGCC
579 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCGCAA--AAAAATATGAAGATGTGCC
* * *
17894816 TAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
642 TAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGC
17894881 CC
707 CC
** * * *
17894883 -G-CCGACCCACTTATTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCATTCTAAGATTGG
1 TGCCCG-CCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGATCGG
* *
17894946 ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTT
65 ACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * * *
17895011 GCCGCGACAACATCGCCTGAGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCAATC
130 GCCG-GGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
* * *
17895076 GGGGGGTCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTGTATTGGC
194 GGGGGG-C-CGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
17895141 CCCCTATCCCTCCTCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
257 CCCCTATCCATCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
17895206 TTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATGTT
322 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
17895271 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
387 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * *
17895336 CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTAAAAAAAATCCCGAACCGCAAGAGGTTTCA
452 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCA
* * * *
17895401 AAAATCATGAAAAATAGAAAATGAGTCGTCTTACAATGAAACTTCACGTGAAGGCTTAAGGGACC
517 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
17895466 TTTGTATGAATTTTTTAAAAGCCATAAAAATGGCATTGGCGCAAAAAAATATGAAGATGTGCCTA
582 ATTGTATGAA---TTTACAAGCCATAAAAATGGCATTGGCGCAAAAAAATATGAAGATGTGCCTA
**
17895531 AACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCT-GTTGGCATAGTGCCC
644 AACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTG---
17895595 ACCCACC
706 ---C-CC
* * * *
17895602 TGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGCCATACGGAGGTCATTCCCACTCTAAGATCGGA
1 TGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGATCGGA
* * ** * *
17895667 CCGAACCGAGGGTTACGGTGGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
66 CCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG
*
17895732 CCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGTTCG
131 CC-GGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* * * *
17895797 GGGGGCCGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCATTATATTGGCCCC
195 GGGGGCCGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCC
* *
17895862 CCTTTCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
259 CCTATCCATCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
17895927 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
324 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
17895992 ACGCTTCGAGCTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
389 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * *
17896057 AAGTTTGGGGCCAAAACGCCTTCCGAAAAAATTTCAAAAAATCCCAAACCGTAAAAAGTTTCAAA
454 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAA
*
17896122 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCAT
519 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
17896187 TGTATGAATTTACAAGCCATAAAAATGGCATTGCCACACAAAAATATGAAGATGTGCCTAAACCC
584 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCGCAAAAAAATATGAAGATGTGCCTAAACCC
* * * * * *
17896252 AACTACCACCCTATCGATCCACT-GCTTGCGTATCACGTCTCTCTAGCCGACGTAGTGCCC
649 ACCTACCACCCTATCGATCCA-TGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCC
* * * * *
17896312 -GCCGGCCCGCTCGTTAT-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAG
1 TGCCCGCCCACTCGTT-TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGATCGG
*
17896375 ACCAGACC
65 ACCGGACC
17896383 AAGCGGTGCG
Statistics
Matches: 1331, Mismatches: 142, Indels: 56
0.87 0.09 0.04
Matches are distributed among these distances:
709 317 0.24
710 267 0.20
711 4 0.00
712 9 0.01
713 90 0.07
714 1 0.00
715 4 0.00
716 92 0.07
717 9 0.01
718 49 0.04
719 316 0.24
720 169 0.13
721 4 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (708 bp):
TGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGATCGGA
CCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG
CCGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
GGGGCCGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCATCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCGCAAAAAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCC
Found at i:17896539 original size:26 final size:26
Alignment explanation
Indices: 17896503--17896553 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17896493 TTGACTTAGG
17896503 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
*
17896529 CATACGGAGTTCTTTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
17896554 GATTGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:17897408 original size:26 final size:26
Alignment explanation
Indices: 17897377--17897429 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17897367 GATGACTTAC
* *
17897377 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17897403 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17897429 G
1 G
17897430 TTCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17897856 original size:878 final size:883
Alignment explanation
Indices: 17895635--17898115 Score: 3541
Period size: 878 Copynumber: 2.8 Consensus size: 883
17895625 TTGGCTTAGC
* * * **
17895635 CATACGGAGGTCATTCCCACTCTAAGATCGGACC-GAACCGAGGGTTACGGTGGCACATGCTAGG
1 CATACGGAGTTCATTCCCAGTCTAAGTTCGGACCAG-ACCGAGGGTTACGGCAGCACATGCT-GG
* *
17895699 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCACCGGAGA
64 GTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCATCGCCGGAGCATCACCGGAGA
* *
17895764 ACCTGACCGGCGGCATTGGGGTTCCGACGTTC-GGGGGGCCGGGGGTGTGCGCACATGATGTGTG
129 ACCTGACCGGCGGCATTGGGG-TCTGACGATCGGGGGGGCCGGGGGTGTGCGCACATGATGTGTG
* * *
17895828 ATGGGTGCTAGTACTT-GGCCATTATATTGGCCCCCCTTTCCTTCATCAAACCTCGAGAACTCAC
193 ATGGGTGCTGGTACTTGGGCC-TTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCAC
17895892 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
256 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
17895957 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGCTTTTAGCTGAATTTTTTTG
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGCTTTTAGCTGAATTTTTTTG
17896022 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCGAAAAA
386 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCGAAAAA
* * * *
17896087 ATTTCAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
451 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
17896152 GCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
17896217 TTGCCACACAAAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACT-GCTTGC
581 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCA-TGGCTTGC
* * * * *
17896281 GTATCACGTCTCTCTAGCCGACGTAGTGCCCGCCGGCCCGCTCGTTAT-GTCGGTTGGCTTAGGC
645 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTT-TCGTCGGTTGGCTTAGGC
* * *
17896345 ATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGCGGTGCGACAGCAGGATCGGCTGC
709 AT----AGTTCA-TCCTAGTC--AGA--AGACCAGACCAAGCGGTACGACAGCAGGATCGACAGC
* * * * * *
17896410 ACGTAGAGGGGGAACCAGCCAATCCCTGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCCATC
765 ACGCAGAGGGGGAACCAGCCAATCCCCGGCTTGCACATCCCGCCCCTCTGGCCAGCTGAGCCACC
* * * *
17896475 GTACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAA
830 ATACACTCGTTTCGTGGGATGACTTACGCATACGGAGTTCATTCCCAGTCTAAA
* **
17896529 CATACGGAGTTCTTTCCCAGTCTAAGATT-GGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 CATACGGAGTTCATTCCCAGTCTAAG-TTCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
17896593 CTCGGGCATGTGCTGGTGGCACATTTTTCTTCGTC-GGGCACCATCGCCAGAGCATCACCGGAGA
65 -TCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCATCGCCGGAGCATCACCGGAGA
* ** * * * * *
17896657 ACCTGGCCGATGGCATTAGGGTTTCGACGATCGAGGGGGCCAGGGG-GTGCGCACATGATGTGCG
129 ACCTGACCGGCGGCATTGGGGTCT-GACGATCGGGGGGGCCGGGGGTGTGCGCACATGATGTGTG
* *
17896721 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACAC
193 ATGGGTGCTGGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
17896786 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * * *
17896851 GGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACCTCAAGTTTTTAACTTAATTTTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGCTTTTAGCTGAATTTTTTTGTG
* * * ** *
17896915 CATACCAACAAAAATACAAGGATCATGTCTACAAAGTTTGGACCCAGAACGCCTTCCGAAAAAAT
388 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCGAAAAAAT
*
17896980 TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
453 TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
17897045 CATGAAACTTCACGCGAAGGCTTAA-GGACCATTGTATGAATTTATAAGCCATAAAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
17897109 GGCATGTAGAAATATGAATATGTGCCTAAACCCATCTACCACCCTATCGATCCATGGCTTGCGCA
583 GGCACGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCATGGCTTGCGCA
* * * * *
17897174 TCCCATTTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTACGCATAG
648 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAG
* * *
17897239 -TC-T-C-AGATC-G-A-ACCAGACCGAG-GGTTACGGCAGTAGGATCGACAGCACGCAGAGGGG
713 TTCATCCTAG-TCAGAAGACCAGACCAAGCGG-TACGACAGCAGGATCGACAGCACGCAGAGGGG
* * *
17897296 G-ACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCAGCTGAG-CACCCATACGCTCG
776 GAACCAG-CCAATCCCCGGCTTGCACATCCCGCCCCTCTGGCCAGCTGAGCCA-CCATACACTCG
* *
17897359 TTTCGTGGGATGACTTACGCATACGGAGTTCATTCCTAGTCTAAG
839 TTTCGTGGGATGACTTACGCATACGGAGTTCATTCCCAGTCTAAA
* * *
17897404 CATACAGAGTTCATTCCCAGTCTAAGTTCGAACCAGACTGAGGGTTACGGCAGCACATGCTGCGG
1 CATACGGAGTTCATTCCCAGTCTAAGTTCGGACCAGACCGAGGGTTACGGCAGCACATGCTG-GG
* * * * **
17897469 GCAGGCATGTGCTGGTGCCGTATTTTTCTTCATCAGGGCACCATCGTCGGAGCATCGTCGGAGAA
65 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCATCGCCGGAGCATCACCGGAGAA
*
17897534 CCTGACCGGCGGCATTGGGGATCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTG
130 CCTGACCGGCGGCATTGGGG-TCTGACGATCGGGGGGGCC-GGGGGTGTGCGCACATGATGTGTG
17897599 ATGGGTGCTGGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-
193 ATGGGTGCTGGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
17897663 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
17897728 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGCTTTTAGCTGAATTTTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGCTTTTAGCTGAATTTTTTTGTG
** *
17897793 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAAT
388 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCGAAAAAAT
* * * * * *
17897858 TTTAACAAAT-TCGAATCGCAAAAAGTTTCAAAAATCGTGAAAAA-ATGAAAATGGGTTGTCTTA
453 TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA-GAAAACGAGTCGTCTTG
* *
17897921 CCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCAATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
17897986 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGC
582 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCATGGCTTGCGC
* *
17898051 ATCCCGTCTCTCTGGCCAGCGTAGTTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
647 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
17898116 CGGAGTTCAT
Statistics
Matches: 1413, Mismatches: 153, Indels: 58
0.87 0.09 0.04
Matches are distributed among these distances:
874 10 0.01
875 203 0.14
876 60 0.04
877 147 0.10
878 348 0.25
879 1 0.00
881 2 0.00
882 3 0.00
883 1 0.00
885 2 0.00
886 2 0.00
889 2 0.00
890 145 0.10
891 194 0.14
892 104 0.07
893 94 0.07
894 93 0.07
895 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (883 bp):
CATACGGAGTTCATTCCCAGTCTAAGTTCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGT
CGGGCATGTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCATCGCCGGAGCATCACCGGAGAAC
CTGACCGGCGGCATTGGGGTCTGACGATCGGGGGGGCCGGGGGTGTGCGCACATGATGTGTGATG
GGTGCTGGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGCTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCGAAAAAATTTT
AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCATGGCTTGCGCATCC
CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAGTTC
ATCCTAGTCAGAAGACCAGACCAAGCGGTACGACAGCAGGATCGACAGCACGCAGAGGGGGAACC
AGCCAATCCCCGGCTTGCACATCCCGCCCCTCTGGCCAGCTGAGCCACCATACACTCGTTTCGTG
GGATGACTTACGCATACGGAGTTCATTCCCAGTCTAAA
Found at i:17901398 original size:849 final size:849
Alignment explanation
Indices: 17898079--17905058 Score: 6628
Period size: 849 Copynumber: 8.1 Consensus size: 849
17898069 GCGTAGTTCC
* * *
17898079 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * *
17898144 CCGGACTGAGGGTTAT-GGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCATATTTTTCTTC
66 CCAGACCGAGGGTTGTAGG-AGCACA---TA---TTG-G---GTTC-GG-G-C--ATTTTTCTTC
* * * * **
17898208 ATCGGGGCACTATCGTCGGAGCATCG-TCGGAGAACCTGACCGACGGCATAGGGGTTCCGGTGAT
115 GTCGGGGCACCATCGCCGGAGCATCGCT-GGAGAACCTGACCGACGGCATTGGGGTT-CGACGAT
* *
17898272 CGGGGGGGCCGGGGGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
178 CGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
17898336 CCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
243 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
17898401 TTTGCTGCCAGTAGCCGA-TAAAGTGTCTGAAATAGGGACACTTTTTTCAAATAGTCATAAAATC
308 TTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
17898465 TTGTACACTTCGAGTTTTTAGGTGAATTTTTTTGTCCATGCCAACAAAAATACAAGGATCACTTC
372 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * ** *
17898530 TACCAAGTTTCGGGCCAAAACTACTTCTAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTT
437 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTT
* *
17898595 TGAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG-AGGCTTAAGGG
502 T-CAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
17898659 ACCATTGCATGAAATTT-CAAGCCATAAAAATGGCTTTGGCACATAGAAATATGAAGATGTGCCT
566 ACCATTGTATG-AATTTACAAGCCAT-AAAATGGCATTGGCACATAGAAATATGAAGATGTGGCT
* * * *
17898723 AAACCCACCTACCACCCTATCGATCTACGACTTACGCATCCCGTCTCTCTGGCCGGCATAGT-GC
629 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC--AATAGTAG-
* * * * * **
17898787 CCGCCCACCTGCTCGTTTCATCGGTTGGCATAGGCATACGGAGCCCATTCCCAGTCTAAGATCAG
691 CTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
** * * * * ** *
17898852 ACCGAGCCGATGGTTGTGGTAGCAAGATC-AGCAGCACACAGACGGGGACCCGACCGATCCCCGA
756 ATAGA-CTGAGGGTTGTGGCAGCAGGATCGA-CAGCACGTAGAGGGGGACCCGACCGATCCCCGA
* * * * *
17898916 CTTACGCATCCCGCCCCGCTGGCCGACTGAA
819 CTTGCGCATCCCTCCCCTCTGGCCGGCTGAG
*
17898947 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT-CTGGAGTTCATTCCCAGTCTAAAATCGG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GGAGTTCATTCCCAGTCTAAGATCGG
*
17899011 ACCAGACCGAGGGTTGTGGGAGCACATACTACGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
65 ACCAGACCGAGGGTTGTAGGAGCACATA-T----T-GGG--T-T-C--G-G--GCATTTTTCTTC
** * * * * * *
17899076 CCCGAGGCACCATCGTCGGAGCATCGCCGGAGAACCTAACCGGCGGCATTGGGGTTCCGACAATC
115 GTCGGGGCACCATCGCCGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTT-CGACGATC
* *
17899141 GGGGGGGTCAGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTG
179 -GGGGGGTC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * * * * *
17899206 GCCTCCTATCCCTCATCAAACCAT-GAGAACTCATACACCCTTAAAGAGAATTCGAGATTTTGCA
242 GCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
17899270 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAAT
306 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
17899335 CTTGTACCCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
371 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * ** *
17899400 CTACCATGTTTGGGGCCAAAACTCCTT-CTAAAAAAGTTTTAAAAAATCCTGAACTGCAAAAAGT
436 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCAAACCGCAAAAAGT
* * * * *
17899464 TTCCAAAATCGTGAAAAATAAAAAAAGGAGTCGTTTTGCCATGAAACTTCACGTGAAGGCTTAAG
500 TTTCAAAATCATGAAAAAT-AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * *
17899529 GGACCATTGTATAAATTTACAAGCCACAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCC
564 GGACCATTGTATGAATTTACAAGCCA-TAAAATGGCATTGGCACATAGAAATATGAAGATGTGGC
* * * *
17899594 TAAACTCACCTACCACCCAATCGATCCACGGCTTTCGCATCCCGTCTCTCTGGCCGACGTAATGC
628 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-C--C--AAT-A
* * *
17899659 GT-GCCTGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGCTCATTGCCAGTCTAAG
687 GTAG-CTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * * * * ** *
17899723 ATCAGACCGAGCCGATGGTTGTGGTAGCAAGATCGACAGCACACAGAGGAGGACCCGACCGATCC
751 ATCAGATAGA-CTGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCC
* * * *
17899788 CCGGCTTGCACATCCCGCCCCTCTGGCTGGCTGAG
815 CCGACTTGCGCATCCCTCCCCTCTGGCCGGCTGAG
* *
17899823 CGTCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA--
* * * ** * *
17899888 GAGTTCATTCTCAGGGAAAGATCAGACCGGATCGAGGGTTG-CGGCAGCACGTGCTAGGCTCGGG
58 -AG---A---TC---G---GACCAGA-C----CGAGGGTTGTAGG-AGCACATATTGGGTTCGGG
* * * ** ** * * * * **
17899952 CA-TGTGC-TGGT-GCCGCTTTTTTCTTCACCGGTGCACCATCG-TCGGAGAACCTGACTGGTGG
104 CATTTTTCTTCGTCGGGGC----ACCATCGCC-G-G-AGCATCGCT-GGAGAACCTGACCGACGG
* * *
17900013 CATTGGGGTTCCGACAATCGGGGGGCCGAGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
161 CATTGGGGTT-CGACGATCGGGGGGTCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
17900078 TACTTGGCCCTTATATTAGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
224 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
17900143 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTT
289 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
17900208 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTGTGTGCATGCCAACAA
354 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* *
17900273 AAATACAAGGATCATGTCTACCAAGTTTGGGGTCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
419 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* ** *
17900338 CCGAACTC-CAAAAAGTTTTCAAAATTGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
484 CCAAAC-CGCAAAAAGTTTTCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
17900402 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCATTGGCACATAGAA
548 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCATTGGCACATAGAA
* * * * * *
17900467 ATATGAAGATATGGCTAAACCCGCCTGCCACCCTATCGATCCACGGCTTGCGCAACTCGTCTTTC
613 ATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
** * * * * *
17900532 TGGCCGGCT--TTG-TGCCCGCCCGATCATTTCATCGGATGGCTTAGGCATACGGAGTTCATTCC
678 TGGCC-AATAGTAGCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * *
17900594 CAGTTTAAGATCGGACTAGACCGAGGGTTGTAGCAGCAGGATCGGCAGCACATAGAGGGGGACCC
742 CAGTCTAAGATCAGA-TAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGACCC
*
17900659 GACCGATCCCCGACTTGCGCATCCCTCCCCTC-GACCGG-TCGAG
806 GACCGATCCCCGACTTGCGCATCCCTCCCCTCTGGCCGGCT-GAG
*
17900702 CGCCCGCACGCTCGTTTCGTGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
*
17900767 CCAGACCGAGGGTTGTAGGAGCACATATTGGGTTCGGGCATTTTTCTTCGTTGGGGCACCATCGC
66 CCAGACCGAGGGTTGTAGGAGCACATATTGGGTTCGGGCATTTTTCTTCGTCGGGGCACCATCGC
* **
17900832 CGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATTGTGGGTTTCGGGGGGG
131 CGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTC-GACGATCG-GGGGGTCGGGGGGG
** * * *
17900897 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGTGCTTATATTTGCCCCTTATCCATCATC
194 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
** * * * * *
17900962 AAAATTCAAGAGCTCACACCCCCTTAAACAGCATTTGAGATTTTATAGGTTTGCTGTCAGTAGCC
259 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
17901027 ATTAAAGTGTTTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTT
324 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * *
17901092 TTAGCTGAATTTTTTTGTGCATGCTAGCAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCA
389 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * *
17901157 AAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACTGCAAAATGTTTTCAAAATCATGAAAAAT
454 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTCAAAATCATGAAAAAT
*
17901222 AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
519 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * *
17901287 AAGCCATAAAATGGCATTGGCACATAGAAAGATGAAGATATGGCTAAACCCGCCTGCCACCCTAT
584 AAGCCATAAAATGGCATTGGCACATAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTAT
*
17901352 CGATCCGA-GGCTTGCGCATCCCGTCTCTCTGGCCAAT-GTAGTGCCCGACCGCCTGCCCGCTCG
649 CGATCC-ACGGCTTGCGCATCCCGTCTCTCTGGCCAATAGTA--G-CTG--C-CC-GCCCGCTCG
* * * ** ***
17901415 TTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCTAGTATAAGATTGGGCCGAACTGAGGGTT
706 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATAG-ACTGAGGGTT
* * * * *
17901480 G-CG-AGTAAGGATCG-CA-CAC--AGA---GTACCCGATC-ATCCTC--CTTGCGCAT-CCT-C
770 GTGGCAG-CAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCTCC
* *
17901531 CCTCTGG-C-GAT-CG
834 CCTCTGGCCGGCTGAG
* * * **
17901544 CGACCCAG-ACG--GGTTACGGCATCGGAG-TCA-TT-CCCAGTAGCGCGAAG--CATTCCCA--
1 CG-CCC-GCACGCTCGTTTC-G--T-GG-GTTGACTTAGGCA-TA-CG-G-AGTTCATTCCCAGT
* * * * * * *
17901599 -TAAGATTGGACCAGACTGAGGGTGCGGTAGCATTGCTTCTCACATGTCT-GGTGC-TGCA---T
55 CTAAGATCGGACCAGACCGAGGGT--TGTAGGA--G-----CACATAT-TGGGTTCGGGCATTTT
*
17901658 T-TTAGTCGGGG-ACCATCGCCGGAGCATCGCT-GAGAACCTGACCGACGGCATT-GGGTTCGAC
110 TCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCGAC
* * *
17901719 -ATCGGGGGGCCGACGGGTGGTGTGCGCA-ATGATGTGCGATGGGTGCTGGTACTTGG-GCTTAT
175 GATCGGGGGGTCG--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
17901781 ATTTGCCCCTTAT-CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAGAGGCACTTTGAGAT
238 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAAGA-GCA-TTTGAGAT
* *
17901845 TTTATAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
300 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
17901910 CAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGA
365 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * *
17901975 TCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACCACAA
430 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAA
* * * *
17902040 AAAGTTTTGAAAATCGTGAAAAATAGAAAGCGAGTCGTCTTGCCATGCAACTTCACGTGAAGGCT
495 AAAGTTTTCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
17902105 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAT--AAATATGAAGA
560 TAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCA--CATAGAAATATGAAGA
* *
17902168 TGTGGCTAATCCCACCTAGCC-CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCAGGC
622 TGTGGCTAAACCCACCTA-CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC---C
* * * *
17902232 ATACTACCCGCCT-GCTTGCCCGCCCACTCGTTTCGTCGGATAGCTTAGGCATACGAAGTTCATT
683 A-A-TA---G--TAGC-TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * * * * *
17902296 CCCAGTCTAAAATTAGATCGAACTAAGGGTTGCGGCAGCCA-GATCAACAACACTTTGAGAGGGA
740 CCCAGTCTAAGATCAGATAG-ACTGAGGGTTGTGGCAG-CAGGATCGACAGCACGTAGAGGGGGA
* * * *
17902360 CCTGACCGATCCCCGGCTTGTGCATCCCGCCCCAT-TGGCCGGCTGAG
803 CCCGACCGATCCCCGACTTGCGCATCCCTCCCC-TCTGGCCGGCTGAG
* * * * *
17902407 CCCCCGCACGCTCGTTTCGTGGGTTGACTTTGGCATACAGAGTTCATTCCTAGTCTAAGATTGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * *
17902472 CTAGACCAAGGGTTGT-GGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTC
66 CCAGACCGAGGGTTGTAGG-AGCACAT-AT----T-G-G---GT--TCG-G--GCATTTTTCTTC
** * * *** *
17902536 CCCGGGGCACCATCGTCGGAGCATCG-TCGGAGAACTTGACCGGTAGCATTAGGGTTAC-AGCGA
115 GTCGGGGCACCATCGCCGGAGCATCGCT-GGAGAACCTGACCGACGGCATTGGGGTT-CGA-CGA
* *
17902599 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
177 TCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
17902664 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAG
242 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
17902729 GTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATC
307 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
17902794 TTGTACACTTTGATTTTTTAGCTG-ATTTGTTTTGTGCATGCCCAA-AAAAATACAAGGATCACG
372 TTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTGTGCATG-CCAACAAAAATACAAGGATCACG
* *
17902857 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA-T
435 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGT
*
17902921 TTTCAAAAATCAAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
500 TTTC-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *** * *
17902986 GGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGCAGGAATATGAAGATGTGCC
564 GGACCATTGTATGAATTTACAAGCC-ATAAAATGGCATTGGCACATAGAAATATGAAGATGTGGC
* * * * *
17903051 TAAACCCACCTACCACCCTATCGATCAAAGGCTTGCGCATCCTGTCTCTTTGGCCAGCGTAGT-G
628 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCA--ATAGTAG
* * * * * *
17903115 CCTGCCCTCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGTGTTCATTCCCAGTCTATGATTA
691 -CTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * ** * * **
17903180 GACCAGACCGAGGGTTGTGACAGTAGGCTCGGTAGCATGTAGAGTGGGACCCGGTCGATCCCCGA
755 GA-TAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGA
* *
17903245 CTTGCGGAT-CCTGCCCCTCTGGTCGGCTGAG
819 CTTGCGCATCCCT-CCCCTCTGGCCGGCTGAG
* *
17903276 TGCCCGCATGCGT-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATAC
1 CGCCCGCACGC-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA-
*
17903340 GGAGTTCATTCCCAATCTAATATCGGACCAGACCGAGGG-T-TACGACAGCACATACTGGGCTTT
58 --AG-----------------ATCGGACCAGACCGAGGGTTGTA-G-GAGCACATA-------TT
* * * * * *
17903403 GGCATGTGCTGGTGCCGCATTTTTCGTCGTTGGGGCACCATCGTCGGAGCATCACCGGAGAACCT
95 GG---GT--TCG-G--GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAGAACCT
*
17903468 GACCGACGGCATTGGGGTTC--CGA-C-GGGGG--GGGGGGGTGTACGCACATGATGTGCGATGG
152 GACCGACGGCATTGGGGTTCGACGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGG
* *
17903527 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCACACCTCC
217 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * * * * *
17903592 TTAAAGGGTATTTCAGACTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAC
282 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
17903657 ACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTCAATTGTTTTGTGCATG
347 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
17903722 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCTTTCCGAAAAAATTTT-
412 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * *
17903786 AAAAATCTCAAACCGTAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
477 AAAAATCCCAAACCGCAAAAAGTTTTC-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
17903850 GAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGCATTGGC
541 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGC
** *
17903915 ACGA-AGAAATATGAAGATGTACCTAAACCCACGTACCACCCTATCGATCCACGGCTTGCGCATC
605 AC-ATAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
17903979 CC--CTCTCTGGCCACTAGTTGCCGCCCGCCCGCCGCTCGTTTCGTCGGTT-GCTTAGGCAAAAC
669 CCGTCTCTCTGGCCAATAGTAGCTGCCCG--C-CCGCTCGTTTCGTCGGTTGGCTTAGGC-ATAC
* * * * * ** * *
17904041 GGAGTTAATTCCAAGTCTAAGATC-GATGGAATGAAGCGCCGTTGCAAGCTA-GA-CGAAAAGCA
730 GGAGTTCATTCCCAGTCTAAGATCAGATAGACTG-AGGGTTGTGGC-AGC-AGGATCG-ACAGCA
* * * * * * *
17904103 CGCAG-GGGGGACCTCGATC-AGCCCCG-CTTGTGC-TCCCGCCCCTCT-GCCGACTAAG
791 CGTAGAGGGGGACC-CGACCGATCCCCGACTTGCGCATCCCTCCCCTCTGGCCGGCTGAG
* *
17904158 CGCCCG-TCG-T-GTTTCGT-GGTTGAC-TAGGCATA---A-TTCATT-CGA-TCTAAGCATACA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-
** ** * * * * * * * *
17904212 GGTTCATTCCCACTGG--GTATG-G--C---TCGTG-TC--GCATATTTCGTCTTTGTCGACGGT
63 GGACCAGACCGA-GGGTTGTAGGAGCACATATTGGGTTCGGGCAT-TTT--TCTTCGTCG-GGGC
* * *
17904266 A-CA-CGCCGGAGCAT--CT-CA-AACCTGACCGA--GCA-TGGGGTTC-ATGATCGCGGGG-CT
123 ACCATCGCCGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCGACGATCGGGGGGTC-
* * * * * *
17904320 GGGTGGGTGTG-TCA-ATCATGTGCGGGTGGGCCTGCTAGTGACTTGGCCCTAATATTGGCCCCC
187 GGGGGGGTGTGCGCACATGATGTGC-GATGGG--TGCTGGT-ACTTGGCCCTTATATTGGCCCCC
*
17904383 TATCCCCTCATCAAACCTCGAGAACTCACACCCCCTTAACCGAGCATTTGAGATTTTACAGGTTT
248 TAT-CCCTCATCAAACCTCGAGAACTCACACCCCCTTAA-AGAGCATTTGAGATTTTACAGGTTT
* *
17904448 GCTGTCAGTAGCCATTAAAGTGT-TTAGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
311 GCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
17904512 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAGAAAATACAAGGATCACGTCTG
375 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA-AAAATACAAGGATCACGTCTA
* * ** * * *
17904577 CCAAGTTT-GGGCCAAAACTCCTTTCAAAAAAATTAAAAAAAATCTCAAACCACAAAAAGTTTTG
439 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTC
*
17904641 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACC
504 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
17904706 ATTGTATGAATTTACAAGCCACAGAAATGGCATTGGCACATGGAAATATGAAGATGT-GCTTCAA
569 ATTGTATGAATTTACAAGCCATA-AAATGGCATTGGCACATAGAAATATGAAGATGTGGC-TAAA
* *
17904770 CCCACCTACCACCCTATCGATCCATGGCTTGCGCATCTCGTCTCTCTGGCCGACATAGTGCCAGC
632 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-A-ATAGT---AG-
* * * * * *
17904835 CCACCCGCCCGCCCGTTCGTTTCATCGGTTGGCTCAATGCATACGGAGTTCATTCCCAATCTAAG
691 ----CTGCCCGCCCGCTCGTTTCGTCGGTTGGCT-TAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * **
17904900 ATCAGATCGGATTGAAGGTTGCGGCAGCAGAATCGACAGCACGTAGAGGGGGACCCGACTAATCC
751 ATCAGAT-AGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCC
* *
17904965 CCGACTTGCGCATCCCACCCCTCTGGCTGGCTGAG
815 CCGACTTGCGCATCCCTCCCCTCTGGCCGGCTGAG
* * * * *
17905000 CGCCCGCACACTCGTTTCATGGGTTGGCTTAGTCATATGGAGTTCATTCCCAGTCTAAG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
17905059 CATACGGAGT
Statistics
Matches: 5150, Mismatches: 637, Indels: 665
0.80 0.10 0.10
Matches are distributed among these distances:
818 8 0.00
819 5 0.00
820 1 0.00
821 23 0.00
822 8 0.00
823 14 0.00
824 9 0.00
825 35 0.01
826 43 0.01
827 144 0.03
828 201 0.04
829 3 0.00
830 10 0.00
831 2 0.00
832 4 0.00
834 2 0.00
835 1 0.00
837 17 0.00
838 44 0.01
839 54 0.01
840 46 0.01
841 49 0.01
842 332 0.06
843 91 0.02
844 43 0.01
845 47 0.01
846 31 0.01
847 76 0.01
848 22 0.00
849 511 0.10
850 16 0.00
851 20 0.00
852 14 0.00
853 32 0.01
854 14 0.00
855 16 0.00
856 19 0.00
857 62 0.01
858 18 0.00
859 5 0.00
860 19 0.00
861 13 0.00
862 12 0.00
863 25 0.00
864 9 0.00
865 4 0.00
866 2 0.00
867 3 0.00
868 147 0.03
869 174 0.03
870 37 0.01
871 310 0.06
872 113 0.02
873 11 0.00
874 15 0.00
875 23 0.00
876 220 0.04
877 374 0.07
878 49 0.01
879 96 0.02
880 154 0.03
881 5 0.00
882 15 0.00
883 17 0.00
884 15 0.00
885 45 0.01
886 56 0.01
887 186 0.04
888 342 0.07
889 74 0.01
890 310 0.06
891 50 0.01
892 4 0.00
893 2 0.00
894 3 0.00
895 94 0.02
896 3 0.00
897 8 0.00
898 1 0.00
901 3 0.00
902 15 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (849 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CCAGACCGAGGGTTGTAGGAGCACATATTGGGTTCGGGCATTTTTCTTCGTCGGGGCACCATCGC
CGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCGACGATCGGGGGGTCGGGGGGGTG
TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
ACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTCAAAATCATGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAATGGCATTGGCACATAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCG
ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAATAGTAGCTGCCCGCCCGCTCGTTTCGTCGGT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATAGACTGAGGGTTGTGGCAGCAGG
ATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCTCCCCTCTGGCCGGC
TGAG
Found at i:17905067 original size:26 final size:26
Alignment explanation
Indices: 17905033--17905084 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17905023 TTGGCTTAGT
*
17905033 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
17905059 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
17905085 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:17906933 original size:875 final size:878
Alignment explanation
Indices: 17905516--17907309 Score: 2588
Period size: 876 Copynumber: 2.0 Consensus size: 878
17905506 GTTTTGTCGG
* * * * * *
17905516 TTGGCTCAGGCATACGAAGTTCATTCTCAATGTAAGATCAGACCGGACTGAGGGTTGTAGCAGCA
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGGAGCAGCA
* * * * *
17905581 GGATCGGTAGCACGTAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCACCCCTTTCGCTG
66 GGATCGGCAACACGTAGAGGGGGACCCGACCAATCACCGGCTTGCGCATCCCACCCCTCTCGCCG
* * *
17905646 GCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAT
131 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
17905711 ATCAGACCGGACCGAGGGTTATGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTT
196 ATCAGACCAGACCGAGGGTTATGACAGCACATACTGGGCTCGGGCATGTGCTGGTGCCACATTTT
* ** *
17905776 TCTTCGTCAGGGCACCATCGTCGGAGCATCGTCGAAAAACCTGACCAACGACATTGGGGTTCTGA
261 TCGTCGTCAGGGCACCATCGTCGGAGCATCACCGAAAAACCTGACC-ACGACATTGGGGTTCCGA
* * *
17905841 TGATCGGGGGGTCGGGGGGAGTGCGCACATGATGTACGATGGGTGCTGGTACCTAGCCCTTATGT
325 CGATCGGGGGGTCGGGGGGAGTGCGCACATGATGTACAATGGGTGCTGGTACCTAGCCCTTATAT
* * *
17905906 TGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTAT
390 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTCAGATTTTAC
*
17905971 AGGTTTGATGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
455 AGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
17906036 TCTTGTACACTTCGAATTTTTAGCTGAATTTTTTT-TGCATGCCAACAAAAATACAAGGATCACG
520 TCTTGGACACTTCGAATTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACG
* * * *
17906100 TCTACCAAGTTTGGGGCCAAAAC-TCCTTCTGAAAAAGTTCTAAAAAATGCCGAACCGTAAAAAG
585 TCTACCAAGTTTGGGGCCAAAACTTCATGC-AAAAAAATTCTAAAAAAT-CCGAACCGTAAAAAG
17906164 ATTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGA-AACTTCACGTGAAGGCTTA
648 ATTCAAAAATCATTGAAAAATAGAAAACGAGTCGTCTTGCCAT-ACAACTTCACGTGAAGGCTTA
* *
17906227 AAGGACCATTGTATGCATTTACAAGCCATAAAAATGGTATTGGCAAGCAAAAATATGAAGATGTG
712 AAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTG
* * * *
17906292 CCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
777 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCAGGCATAGT
**
17906357 TTCCG-CC-CT-CCCGCCCGCCCGCTCATTTCATCGA
842 GGCCGCCCACTGCCCGCCCGCCCGCTCATTTCATCGA
* * *
17906391 TTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGA-CAGT
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTG-GAGCAGC
* * *
17906455 AGGATCGGCAACACGTAGAGGGGGACCCGACCGATCACCGGCTTGCGCATCCCGCCCCTCTGGCC
65 AGGATCGGCAACACGTAGAGGGGGACCCGACCAATCACCGGCTTGCGCATCCCACCCCTCTCGCC
* *
17906520 GGCTGAGTGCCTGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
130 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
**
17906585 GATTGGACCAGACCGAGGG-T-TGCAGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCACAT
195 GATCAGACCAGACCGAGGGTTATG-A-CAGCACATACTGGGCTCGGGCATGTGCTGGTGCCACAT
* * * *
17906648 TTTTCGTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGA-C-CGGCATTGGGGTTCC
258 TTTTCGTCGTCAGGGCACCATCGTCGGAGCATCACCGAAAAACCTGACCACGACATTGGGGTTCC
* * * * *
17906711 GACGATCGGGGGGTCCGGCGGGGGGTGTACGCACATTATGTGCAATGGGTGCTGGTACTTGGCCC
323 GACGATCGGGGGGT-CGG-GGGGAGTG--CGCACATGATGTACAATGGGTGCTGGTACCTAGCCC
* **
17906776 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGGGCATTTCAGA
384 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTCAGA
* * * *
17906841 TTTTACATGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTC
449 TTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
17906906 ACAAAATCTTGGAC-CTTCGAGTTTTTAGCTGATTTTTTTTGTGCAAGCCAAAAAAAATACAAGG
514 ACAAAATCTTGGACACTTCGAATTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGG
* *
17906970 ATCACGTCTACCAAGTTTGGGGCCAAAACTTCATGCAAAAAAATTTTAAAAAATCCTAACCGTAA
579 ATCACGTCTACCAAGTTTGGGGCCAAAACTTCATGCAAAAAAATTCTAAAAAATCCGAACCGTAA
* ** *
17907035 AAAGTTTTGAAAATCATTGAAAAATAGAAAACGAGTCGTCTTGCCATACAACTTCACGTGAAGGT
644 AAAGATTCAAAAATCATTGAAAAATAGAAAACGAGTCGTCTTGCCATACAACTTCACGTGAAGGC
* * *
17907100 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
709 TTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGAT
* *
17907165 GTGCCTAAACCTACCTATCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCAGGCAT
774 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCAGGCAT
* * ** *
17907230 AGTGGCCGCCCAACTGCCCGCCCGCCCTCTCGTTTTGTCTA
839 AGTGGCCGCCC-ACTGCCCGCCCGCCCGCTCATTTCATCGA
*
17907271 TTGGCTTAGGCATACGGAGTACATTCCCAGTCTAAGATC
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
17907310 GAACCAAACC
Statistics
Matches: 814, Mismatches: 90, Indels: 25
0.88 0.10 0.03
Matches are distributed among these distances:
872 26 0.03
873 5 0.01
874 10 0.01
875 310 0.38
876 398 0.49
877 6 0.01
879 2 0.00
880 57 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (878 bp):
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGGAGCAGCA
GGATCGGCAACACGTAGAGGGGGACCCGACCAATCACCGGCTTGCGCATCCCACCCCTCTCGCCG
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
ATCAGACCAGACCGAGGGTTATGACAGCACATACTGGGCTCGGGCATGTGCTGGTGCCACATTTT
TCGTCGTCAGGGCACCATCGTCGGAGCATCACCGAAAAACCTGACCACGACATTGGGGTTCCGAC
GATCGGGGGGTCGGGGGGAGTGCGCACATGATGTACAATGGGTGCTGGTACCTAGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTCAGATTTTACA
GGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGGACACTTCGAATTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGT
CTACCAAGTTTGGGGCCAAAACTTCATGCAAAAAAATTCTAAAAAATCCGAACCGTAAAAAGATT
CAAAAATCATTGAAAAATAGAAAACGAGTCGTCTTGCCATACAACTTCACGTGAAGGCTTAAAGG
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCAGGCATAGTGGCC
GCCCACTGCCCGCCCGCCCGCTCATTTCATCGA
Found at i:17907934 original size:721 final size:715
Alignment explanation
Indices: 17906535--17908026 Score: 2254
Period size: 721 Copynumber: 2.1 Consensus size: 715
17906525 AGTGCCTGCA
* * ** * * *
17906535 CGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCG
1 CGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAAACCG
* * * **
17906600 AGGGTTGCAGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCGTCGTCGGGGCA
66 AAGGTTGCAGCAGCACATACTGGGCTCGGGCATGTGCTGGAGCCACATTTCTCGTCACCGGGGCA
*
17906665 CCATCGTCGGAGCATCACCGGAGAACCTGACCGGCATTGGGGTTCCGACGATCGGGGGGTCCGGC
131 CCATCGTCGGAGCATCACCGGAGAACCTGACCGGCATTGGGATTCCGACGATCGGGGGG--CGGC
*
17906730 GGGGGGTGTACGCACATTATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
194 GGGGGGTGTACGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
17906795 CTCATCAAACCTCGAGAACTCACACCTCCTTAAAGGGCATTTCAGATTTTACATGTTTGCTGCCA
259 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCA
* *
17906860 GTAGCCGTTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGGACCTTCG
324 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGGACCTTCG
* * *
17906925 AGTTTTTAGCTGATTTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
389 AGGTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAG
* * *
17906990 GGCCAAAACTTCATGCAAAAAAATTTTAAAAAATCCTAACCGTAAAAAGTTTTGAAAATCATTGA
454 GGCCAAAACTTCATCCAAAAAAATTTTAAAAAATCCGAACCGCAAAAAGTTTTGAAAATCATTGA
*
17907055 AAAATAGAAAACGAGTCGTCTTGCCATACAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAA
519 AAAATAGAAAACGAGTCGTCTTGCCATACAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * * *
17907120 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCTACCTATCA
584 TTTAAAAGCCAAAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCTAAACCCACCTAACA
* * *
17907185 CCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCAGGCATAGTGGCCGCCCAACTGCCCG
649 CCCTATCAATCCACGGCTTACACATCCCGTCTCTCTGGCAGGCATAGTGCCCG-CC--CT-CCCG
17907250 CCCGCC
710 CCCGCC
* * * *
17907256 CTCTCGTTTTGTCTATTGGCTTAGGCATACGGAGTACATTCCCAGTCTAAGATCGAACCAAACCG
1 CGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAAACCG
** * * * *
17907321 AAGGTTGTGGCAGCTCATGCTGGGCTCGGGCATGTGCTGGAG-CGCATTTCTCTTCACCGGGGCA
66 AAGGTTGCAGCAGCACATACTGGGCTCGGGCATGTGCTGGAGCCACATTTCTCGTCACCGGGGCA
** * *
17907385 CCATCGTCGGAGCATCGTCGGAGAACTTGACCGACGGCATTGGGATTCCGACGATCGGGGGG-GT
131 CCATCGTCGGAGCATCACCGGAGAACCTGA-C--CGGCATTGGGATTCCGACGATCGGGGGGCGG
* *
17907449 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
193 CGGGGGGTGTACGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
17907514 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
258 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCC
*
17907579 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
323 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGGAC-CTT
* *
17907644 CGAGGTTTTAGCTGAATTTTTTTGTGCATGCCCAAAAAAATACAAGGATCACGTCTACCAAGTTT
387 CGAGGTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
17907709 AGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATCA-
452 AGGGCCAAAACTTCATCCAAAAAAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTTGAAAATCAT
17907773 TGAAAAATAGAAAACGAGTCGTCTTGCCATGA-AACTTCACGTGAAGGCTTAAGGGACCATTGTA
516 TGAAAAATAGAAAACGAGTCGTCTTGCCAT-ACAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
17907837 TGAATTTAAAAGCCAAAAAAATGGCATTTACTTGCAGAAATATGAAGATGTGCCTAAACCCACCT
580 TGAATTTAAAAGCCAAAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
17907902 AACACCCTATCAATCCATGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCTCTCG
645 AACACCCTATCAATCCACGGCTTACACATCCCGTCTCTCTGGCAGGCATAGTGCCCGCCCTCCCG
17907967 CCCGCC
710 CCCGCC
* *
17907973 CGCTCGTTTCGTCGATTGGCTTAGGCATATGGAGTTCATTCCCAGTCTATGATC
1 CGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
17908027 AGACCAGACT
Statistics
Matches: 695, Mismatches: 70, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
717 57 0.08
718 2 0.00
720 228 0.33
721 356 0.51
722 25 0.04
723 27 0.04
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (715 bp):
CGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAAACCG
AAGGTTGCAGCAGCACATACTGGGCTCGGGCATGTGCTGGAGCCACATTTCTCGTCACCGGGGCA
CCATCGTCGGAGCATCACCGGAGAACCTGACCGGCATTGGGATTCCGACGATCGGGGGGCGGCGG
GGGGTGTACGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGGACCTTCGAG
GTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGG
CCAAAACTTCATCCAAAAAAATTTTAAAAAATCCGAACCGCAAAAAGTTTTGAAAATCATTGAAA
AATAGAAAACGAGTCGTCTTGCCATACAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TAAAAGCCAAAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCTAAACCCACCTAACACC
CTATCAATCCACGGCTTACACATCCCGTCTCTCTGGCAGGCATAGTGCCCGCCCTCCCGCCCGCC
Found at i:17908185 original size:26 final size:26
Alignment explanation
Indices: 17908156--17908208 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17908146 GTTGACTTAG
*
17908156 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17908182 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17908208 G
1 G
17908209 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17909788 original size:696 final size:693
Alignment explanation
Indices: 17908182--17910318 Score: 2601
Period size: 696 Copynumber: 3.0 Consensus size: 693
17908172 CCCAGTTTAA
*
17908182 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGTTGCGGCAGCACATGCTGGG
* * * * *
17908247 CTTGGGCATGTGCTGGTGCTGCATTTTTCATCGTCGGGGCACCATCATCGGAGCATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
17908312 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCTGACGGGGGGGTGTACGAACATGAT
130 ACCTGACCGGCGGCATTGGGGTTCCGACGA-CCGGGGGGC---C-GGGGGGTGTGCG-ACATGTT
* * *
17908377 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
189 CTGCAACGGGTGCTGGTA-------C-----TTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* *
17908442 CACACCTCCTT--A-A-CA---G-G--TTT----G---CTGCCAGTAGCCATTAAAGTGTTTGGA
242 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCTGCCAGTAGCCATTAAAGTGTTTGAA
* *
17908490 ATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTT
307 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* **
17908555 GTGCTTTTCAACAAAAATACAAGGAT-TACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
372 GTGCATGCCAACAAAAATACAAGGATCT-CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
17908619 AAATTTTAAAACATCCCGAACCATC-AAAAGTTTTGAAAAT-AGTGAAAAATAGAAAACAAGTCA
436 AAATTTTAAAAAATCCCGAACC-GCAAAAAGTTTTGAAAATCA-TGAAAAATAGAAAACGAGTCA
*
17908682 TCTTGCCATGCAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
499 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
17908747 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCT
564 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
17908812 TGCGCATCCCGTCTCTCTAGCAGGTGTAGTGCCCGCCCGCCCGCTCGCCCACTCGTTTCGTCGGT
629 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCG-T-------TCGTTTCGTCGGT
17908877 TGGCTTAG
686 TGGCTTAG
* * * * * * *
17908885 GCATACGGAGTACATTCCCAGTCTAAGATTGAACCAGACCAAAGGTTACGGTAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC-GAGGTTGCGGCAGCACATGCTGGG
*
17908950 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCA-CATCGTCGGAGCATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** * * * * * *
17909014 ACCTGACCAACAGCATTGGGATTCCGACGATCGAGGGGTCCGGGGGG-GTG-G----GTGCTG-T
130 ACCTGACCGGCGGCATTGGGGTTCCGACGACCG-GGGGGCCGGGGGGTGTGCGACATGTTCTGCA
* ** ** * *
17909072 ACTTGGCCCTTATA-TTGGCCCCCTATCCCTCATCAAA-CTCAATAACTCACACCGCCTTAAAGA
194 AC-GGGTGCTGGTACTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
*
17909135 GCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
258 GCATTTGAGATTTTACAGG-TTTCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTT
*
17909200 TCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTGTTGTGCATGCCAACAA
322 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT-TTGTGCATGCCAACAA
** * * * *
17909265 AAATGGAAGGATCTTGTCTACTAGGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC
386 AAATACAAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
*
17909330 CCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
451 CCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
*
17909395 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCATGCAGAA
516 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * *
17909460 ATATGGAGATGTGCCTATACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTC
581 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * *
17909525 TGGCCGGCGTAGTGCCTGCTCGCCCGTTCATTTCGTTGGTTGGCTTAG
646 TGGCCGGCGTAGTGCCTGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAG
**
17909573 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGGAGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC-GAGGTTGCGGCAGCACATGCTGGG
** * *
17909638 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
17909703 ACCTAAACGGCGGCATTGGGGTTACGGCGACCGGGGGGCCGGGGGGTGTGCGCACATGTTCTGCG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGACCGGGGGGCCGGGGGGTGTGCG-ACATGTTCTGCA
17909768 ACGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
194 ACGGGTGCTGGTACTTGG--C----------CCCCTATCCCTCATCAAACCTCAAGAACTCACAC
17909833 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGG
247 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-CTGCCAGTAGCCATTAAAGTGTTTGAAATGG
* *
17909898 GGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTCAATTGTTTTGTG
311 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTG
* * * *
17909963 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCTTTCCAAAAAAAT
375 CATGCCAACAAAAATACAAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * ** *
17910028 TTT-AAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
440 TTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
* *
17910092 CATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATCAATTTACAAGCCATAAAAATGGCATT
505 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
17910157 GGCACGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
570 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
17910222 TCCAC-CCTCTCTGGCCGACCTAGTGCCCCCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
635 TCC-CGTCTCTCTGGCCGGCGTAGTG-----CC-T--GCCCGCCCGTTCGTTTCGTCGGTTGGCT
17910286 TAG
691 TAG
* * *
17910289 GCAAACGGAGTTAATTCCCAGCCTAAGATC
1 GCATACGGAGTTCATTCCCAGTCTAAGATC
17910319 AGATCAGATG
Statistics
Matches: 1236, Mismatches: 139, Indels: 105
0.84 0.09 0.07
Matches are distributed among these distances:
677 18 0.01
678 23 0.02
679 1 0.00
680 1 0.00
681 2 0.00
684 1 0.00
685 1 0.00
687 3 0.00
688 124 0.10
689 48 0.04
690 2 0.00
691 10 0.01
695 98 0.08
696 279 0.23
697 4 0.00
698 7 0.01
699 1 0.00
701 1 0.00
702 52 0.04
703 92 0.07
704 1 0.00
708 217 0.18
709 191 0.15
710 2 0.00
713 2 0.00
714 1 0.00
716 54 0.04
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (693 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGACCGGGGGGCCGGGGGGTGTGCGACATGTTCTGCAAC
GGGTGCTGGTACTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATA
CAAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
CCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
GGCGTAGTGCCTGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAG
Found at i:17910484 original size:26 final size:26
Alignment explanation
Indices: 17910448--17910500 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17910438 GTTGACTTAG
17910448 GCATACGGAGTTCATTC-CCAGTCTAA
1 GCATACGGAGTTCATTCTCCA-TCTAA
17910474 GCATACGGAGTTCATTCTCCATCTAA
1 GCATACGGAGTTCATTCTCCATCTAA
17910500 G
1 G
17910501 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCCATCTAA
Found at i:17912100 original size:26 final size:26
Alignment explanation
Indices: 17912066--17912117 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17912056 TTGGCTTAGT
*
17912066 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
17912092 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
17912118 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:17912754 original size:26 final size:26
Alignment explanation
Indices: 17912718--17912768 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17912708 TTGACTTAGG
17912718 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
17912744 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
17912769 TATCGGACCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:17916092 original size:26 final size:26
Alignment explanation
Indices: 17916063--17916115 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17916053 CCAATCCGAT
* *
17916063 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17916089 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17916115 C
1 C
17916116 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17916999 original size:26 final size:26
Alignment explanation
Indices: 17916961--17917013 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17916951 CCGATCCGAT
*
17916961 CTTAGACTTGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
17916987 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
17917013 C
1 C
17917014 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:17917708 original size:907 final size:894
Alignment explanation
Indices: 17915450--17917893 Score: 3382
Period size: 889 Copynumber: 2.7 Consensus size: 894
17915440 NNNNNNNNNN
*
17915450 TGCGCAA-CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG-ACATCTTCATATTTCTACATGCC
1 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
*
17915513 AATGCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCGTCACGTGAAGTTTCATG
66 AATGCCATTTTTATGGCATGT-AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* *
17915578 GCAAGACGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGGTTTTTTAAA
130 GCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
* ** * *
17915643 ATTTTTT-TGAAAGGAGTTTTGGTCCTAAACTTGGTAGATGTGATCCTTGTATTTTTGCTGGCAT
195 ATTTTTTCAG-AAGGAGTTTTCATCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
*
17915707 ACACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
258 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
17915772 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTGC-AATGCTCTTGAAGG
323 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT-CAAATGCTCTTTAAGG
* * * *
17915836 GGGTGTGAGTTCTCGAGGTTTGACGAGGGATAGCGGGCCACTATAAGGGCCAAGTACCCGCACCC
387 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * *
17915901 ATCGCACACCGTCTGAGCACA--------CCCCCCGATCGTCGGAACCCTAATGCTACCGGTTAG
452 ATCGCACATCATGTGCGCACACCCCCTGGCCCCCCGATCGTCGGAACCC-AATGC-ACCGGTCAG
** ** *
17915958 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAACGTGCGGCACCAGCACATGCCCA
515 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * *
17916023 AGCCCAGCATGTGCTGTCGTAACCCTCGGTCCAATCCGATCTTAGA-TTGGGAATGAACTCCGTA
580 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTT-GGAATGAACTCCGTA
*
17916087 TGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCCCTTA
644 TGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCCCTCA
* * * * * * * *
17916152 GCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATTGGTCGGGTCCCCCTCTGGATGCTACCGAT
709 GCAGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCAGGTCCCCCTCTCGATGCTACCAAT
* * ** * *
17916217 CCTGTTATCGTAACCCTCAGTTCGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCC
774 CCTGCTACCACAACCCTCAGTTCGATCCGATCTTAGATTGGGAATAAACTCCGTATGCCTAAGCC
* * * *
17916282 AACCGACGAAACGCGTGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGA
839 AACCAACAAAACGCGTGGGCAGGCGGGCAGGCACTACGTCGGCCAGAGAGACGAGA
*
17916338 TGCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATA-TTCTGCATGCC
1 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
*
17916402 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
66 AATGCCATTTTTATGGCATGT-AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* *
17916467 GCAAGAGGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAA
130 GCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
* * * *
17916532 ATTTTTTCAGAAGGGGTTTTCAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTCGCAT
195 ATTTTTTCAGAAGGAGTTTTCA--TCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * *
17916597 GCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGA-TTTGTGACCATTTGAAAATAGTATC
258 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
17916661 CCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
323 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
17916726 GATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
388 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCA
*
17916791 TCGCACATCATGTGCGCACACCCCCTGGCCCCCCCGATCGTCGGAATCCCAATGTCATCGGTCAG
453 TCGCACATCATGTGCGCACACCCCCTGG-CCCCCCGATCGTCGGAA-CCCAATG-CACCGGTCAG
* * ** *
17916856 GTTCTCCGGCGATGCTCCAACGATGGTGCCCCGACAAAGAAAAATGTAGCACCAGCACATTCCCG
515 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* *
17916921 AGCCTTA-CATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTTGGAATGAACTCTGTA
580 AGCC-CAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTTGGAATGAACTCCGTA
* * * * * *
17916985 TGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGCGCTCA
644 TGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCCCTCA
* ** *
17917050 GCAGGCCAGAGGGGCGGGATGCACTTGCCGGGGATCGATCAGGTCCCCCTCTACG-TGCTGCCAA
709 GCAGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCAGGTCCCCCTCT-CGATGCTACCAA
* *
17917114 TCCTGCTGCCACAACCCTCAG-TCTGGTCCGATCTTAGATTGGGAATAAACTCCGTATGCCTAAG
773 TCCTGCTACCACAACCCTCAGTTC-GATCCGATCTTAGATTGGGAATAAACTCCGTATGCCTAAG
*
17917178 CCAACCAACAAAATGAGCGGGCGGACGGGTGGGCAGGCGGGCAGGCAGTACGTCGGCCAGAGAGA
837 CCAACCAAC-AAA--A-----C-G-C--GTGGGCAGGCGGGCAGGCACTACGTCGGCCAGAGAGA
*
17917243 CGGGA
890 CGAGA
* *
17917248 TGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCC
1 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
* *
17917313 AATGCAATTTTTATGGC-T-T-ATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
66 AATGCCATTTTTATGGCATGTAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * * * *
17917375 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCTGAATTTTTTTAAA
131 CAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
*
17917440 TTTTTTCAGAAGGAGTTTTCTATCCAAACTTGGTAGACGTGATCATTGTATTTTTGTTGGCATGC
196 TTTTTTCAGAAGGAGTTTTC-ATCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * *
17917505 ACGAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCA
260 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
17917570 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
325 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
17917635 TGTGAGTTCTCGATGTTTGATGAGGGATAGAGAGCCAATATAAGGGCCAAGTACAAGCACCCATC
390 TGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * *
17917700 GTACATCATGTGCGCACACCCCCTGGCCCCCCGATTGTTGAAACCCCAATGCCGCCGGTCAGGTT
455 GCACATCATGTGCGCACACCCCCTGGCCCCCCGATCGTCGGAA-CCCAATG-CACCGGTCAGGTT
* * * * **
17917765 CTCAGACGATGCTTCGGCGATGGTGCCTTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
518 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * * *
17917830 CCAGCATGTGCTACCGCAACCCTTGATCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGC
583 CCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTTGGAATGAACTCCGTATGC
17917894 CTAAGCCAAA
Statistics
Matches: 1378, Mismatches: 141, Indels: 56
0.87 0.09 0.04
Matches are distributed among these distances:
888 8 0.01
889 341 0.25
890 83 0.06
891 2 0.00
897 2 0.00
898 306 0.22
899 10 0.01
901 1 0.00
905 1 0.00
906 213 0.15
907 292 0.21
908 2 0.00
909 1 0.00
910 90 0.07
911 26 0.02
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (894 bp):
TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
AATGCCATTTTTATGGCATGTAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
CAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
TTTTTTCAGAAGGAGTTTTCATCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
GTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
CACATCATGTGCGCACACCCCCTGGCCCCCCGATCGTCGGAACCCAATGCACCGGTCAGGTTCTC
CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
GCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTTGGAATGAACTCCGTATGCTTAG
ACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCCCTCAGCAGGCC
AGAGGGGCAGGATGCACAAGCCGGGGATCGATCAGGTCCCCCTCTCGATGCTACCAATCCTGCTA
CCACAACCCTCAGTTCGATCCGATCTTAGATTGGGAATAAACTCCGTATGCCTAAGCCAACCAAC
AAAACGCGTGGGCAGGCGGGCAGGCACTACGTCGGCCAGAGAGACGAGA
Found at i:17918650 original size:697 final size:703
Alignment explanation
Indices: 17917125--17920003 Score: 3604
Period size: 697 Copynumber: 4.1 Consensus size: 703
17917115 CCTGCTGCCA
* * *
17917125 CAACCCTCAGTCTGGTCCGATCTTAGATTGGGAATAAACTCCGTATGCCTAAGCCAACCAACAAA
1 CAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AA
* * * * *
17917190 ATGAGCGGGCGGACGGGTGGGCAGGCGGGCAGGCAGTACGTCGGCCAGAGAGACGGGATGTGCAA
65 ATGA-------GA--GGTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
17917255 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TTGCATGCCAATGCA
121 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTT-CATGCCAATGCC
*
17917319 ATTTTTATGGC--TT--ATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
185 ATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
17917380 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAG-TTCTGAATTTTTTTAAATTTT
250 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTTCGGGATTTTTTAAAATTTT
**** * * *
17917444 TTCAGAAGGAGTTTTCTATCCAAACTTGGTAGACGTGATCATTGTATTTTTGTTGGCATGCACGA
315 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAC-A
* *
17917509 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCACAT
379 AAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCA-AT
*
17917573 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
443 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGT
* * * **
17917638 GAGTTCTCGATGTTTGATGAGGGATAGAGAGCCAATATAAGGGCCAAGTA-CAAGCACCCATCGT
508 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAA-CACCCATCAC
* * * *
17917702 ACATCATGTGCGCACACCCCCTGGCCCCCCGATTGTTGAAACCCCAATGCCGC-CGGTCAGGTTC
572 ACATCATGTGCGCACACCCCCTGGCCCCCCGA-CGTCGGAACACCAATGCCGCAC-GTCAGGTTC
*
17917766 TCAGACGATGCTTCGGCGATGGTGCCTTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
635 TC---CGA--------CGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
17917831 CAGCATGTGCTACCG
689 CAGCATGTGCTACCG
* * * *
17917846 CAACCCT-TGATCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAACGACGA
1 CAACCCTCAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-A
* * * * * * * *
17917910 AACGAGCAGGTGGACGGGCGGGTGGGCACTACACCGACCAGAGAGATGGGATGCGCAAGCCTTGT
64 AATGAG-AGGTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
17917975 ATCGATAGCGTGGTACGTGGGTTTAGGCACATCTTCATATTTCTTCATGGCAATGCCATTTTTAT
128 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTAT
*
17918040 GGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
193 GGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
**
17918105 TTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTTC-GGATTTTTTAAAATTTTTTTGGAAG
258 TTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTTCGGGATTTTTTAAAATTTTTTCAGAAG
* * * *
17918169 GATTTTTGGCCCCAAA-TGTAGTAGACATGATCCCTGTATTTTTATTGGCATGCACAATAAAAAT
323 GAGTTTTGGCCCCAAACT-TGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAA-AAAAAT
* * * ** *
17918233 CAGCTAAAAACTTGAAGTGTACAAAATCTTGTGACCATTTGAAAAAAGTG-CCCTCTATTCAGAG
386 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAAT-TTCAGAC
*
17918297 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT-CT-CTTAGGGGGGTGTGAGTTCT
450 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCT
* * * *
17918360 CGAGG-TTGATGA-GGATAGGGGGCC-ATATAAGGGCCAAGT-TCAGCCACCGATCGCACATCAT
515 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA-ACACCCATCACACATCAT
* * * *
17918421 GTGCGCACA-CCCCTCGGCCGCCCG-CGTCGGAACCCCAATGCTGC-CG-CTGGTTCTCCGACGA
579 GTGCGCACACCCCCT-GGCCCCCCGACGTCGGAACACCAATGCCGCACGTCAGGTTCTCCGACGA
* * * **
17918482 TGGTGCCTCAACGAAGAAAAATTCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCG
643 TGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCG
* * * *
17918543 TAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAAGTCCGTATGCCTAAGCCAACCGACAAC
1 CAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAA-
* * * * *
17918608 ATGAGTAGGTGGGCGGGCAGGCGGGCATTACGTCGGCCAGAGAGACGGGATGCGCACGCCGAGGA
65 ATGAG-AGGTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
17918673 TCGATAGGGTGGTAGGTGGGTTTAGGCACAT-TTCATATTTCTACGTGCCAATGCCATTTTTATG
129 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTATG
*
17918737 GCTTGTTAAATTCATACAATGGTCCCTTAA--CTTCACGTGAAGTTTCATGGCAAGACAACTCG-
194 GCTT-TTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
17918799 TTTCTATTTTTCATCAAAATTTTTGGAAACTTTTTG-TGGTTCGAGATTTTTTTAAAA-TTTTTC
258 TTTCTATTTTTCAT---GATTTTT-GAAACTTTTTGCAGTTTCGGGA-TTTTTTAAAATTTTTTC
* * * * *
17918862 GGAACGAGGTTTGG-CCCAAATTTGGTAGA-AGTGATCCTTGTATTTTTTTTTGCATGCACAAAA
318 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACA-TGATCCTTGTATTTTTTTTGGCATGCACAAAA
*
17918925 AAAGTTAGCTAAAAA-TCGAAGTGTACAAGATTTT-TGA-CATTTGAAAAAAGTGTCCCAATTTC
382 AAA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTC
*
17918987 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCCTTAAGGGGGTGTGAG
446 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAG
* *
17919052 TTCTTGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAACACCAATCACACAT
511 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCACACAT
*
17919116 CATGTGTGCGCACA-CCCCTGGCCCCCCGATCG-CTGGAACACCAATGCCGCAGGTCAGGTTCTC
576 CA--TGTGCGCACACCCCCTGGCCCCCCGA-CGTC-GGAACACCAATGCCGCACGTCAGGTTCTC
* * * *
17919179 CGGCGATGGTGCCTTGACGAAGAAAAA-ACGGCACCAGCACATGCCCCGAG-CC--CA-GTGCTG
637 CGACGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATG-CCCGAGCCCAGCATGTGCTA
*
17919239 CCA
701 CCG
* * * * * * *
17919242 CAACCCTCAATCTGATGCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGGCAACCGATGAA
1 CAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-CAA
* * *
17919307 A--CGA-GCGGGCGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGAT
65 ATGAGAGGTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * * *
17919369 TGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGGCAATGCCATTTTTATGG
130 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTATGG
17919434 CTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAA-ACGACTCGTT
195 CTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC-AAGACGACTCGTT
*
17919498 TTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTCGGGATTTTTTAAAATTTTTGT-AGAAG
259 TTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTTCGGGATTTTTTAAAATTTTT-TCAGAAG
*
17919562 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATC
323 GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAC-AAAAAAATC
* *
17919627 AACTAAAAACTCGAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCAATTTCAGACAC
387 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACAC
**
17919692 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTTA
452 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCG
*
17919757 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTACCAACACCCATCACACATCATGTG
517 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCACACATCATGTG
*
17919822 CGCACACCCCCTGGCCCCCCGATCGTCGGAACACCAATGCCGTC-GGTCAGGTTCTTCGGCGATG
582 CGCACACCCCCTGGCCCCCCGA-CGTCGGAACACCAATGCCG-CACGTCAGG----T------T-
* * *
17919886 CTCCGACGATGCTGCCCCGACGAAGAAAAATGGGGCACCAGCACATGCCCGAGCCCAGCATGTGC
634 CTCCGACGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
17919951 TACCG
699 TACCG
* * *
17919956 CAACCCTCAGTCTGGTCCGCTCTTAGACTGGGAAAGAACTCCCTATGC
1 CAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
17920004 TTAGACTGGG
Statistics
Matches: 1892, Mismatches: 189, Indels: 161
0.84 0.08 0.07
Matches are distributed among these distances:
694 96 0.05
695 171 0.09
696 168 0.09
697 343 0.18
698 94 0.05
699 231 0.12
700 63 0.03
701 16 0.01
702 17 0.01
703 39 0.02
705 3 0.00
708 8 0.00
709 2 0.00
710 49 0.03
711 21 0.01
712 49 0.03
713 118 0.06
714 58 0.03
715 25 0.01
716 6 0.00
717 253 0.13
718 3 0.00
720 1 0.00
721 58 0.03
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (703 bp):
CAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA
TGAGAGGTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTATGGC
TTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCATGATTTTTGAAACTTTTTGCAGTTTCGGGATTTTTTAAAATTTTTTCAGAAGGAG
TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCACACATCATGTGCGCA
CACCCCCTGGCCCCCCGACGTCGGAACACCAATGCCGCACGTCAGGTTCTCCGACGATGGTGCCT
CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCG
Found at i:17920929 original size:26 final size:26
Alignment explanation
Indices: 17920878--17920930 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17920868 CTGGTTCGAT
***
17920878 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17920904 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17920930 C
1 C
17920931 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17923709 original size:703 final size:704
Alignment explanation
Indices: 17921896--17924060 Score: 3194
Period size: 709 Copynumber: 3.1 Consensus size: 704
17921886 ACCGTCGGTT
* * *
17921896 CGGTCCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAAACGACGAAACGAGCGGACGG
1 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GA-GG
* *
17921961 ACGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGATGG
64 ACGGGCAGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
**
17922026 TAGGTGGGTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTTTAAATTC
129 TAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTTTAAATTC
* * *
17922091 ATACAATGGTCCCTTAAGCCTTCATGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTGTTCA
194 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * *
17922156 TTATTTTCGAAACTTTTTACGGTTTGGTATTTTTTAAAATTTTTTTGGAAGGAGCTTTGGCCCCA
259 TAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTTGGAAGGAGCTTTGGCCCCA
* *
17922221 AACTTGGTAGACATGATCCTTGTATTTTTTTTTGCATGCACAAAAAACAATCAGCCAAAAACTCG
323 AACTTGGTAGACGTGATCCTTGTATTTTTTTTTGCATGCACAAAAAA-AATCAGCTAAAAACTCG
* * * * *
17922286 AAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTTAGATAATTTAATGGCTACT
387 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACT
* * * * *
17922351 GGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGAGTGTGAGTTCTCGAGGTTTGATGAGG
452 GGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
* * *
17922416 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCGATCGCACATCATGTGCGCACACCCCCTC
517 GATAGGGGGCCAATATAAGGGCCAAGTACCAACACCAATCACACATCATGTGCGCACACCCCCT-
* * * * * ** * * *
17922481 GGCCCGCCCGATCATCGGAACCCCAATGCTGCCGTTCTTGTTCTCCGACGATGGTG-CCTCAATG
581 GGCCCCCCCGATCGTCGGAACACCAATGCCGCCGATCAGGTTCTCCGGCGATGGTGCCCT-GACG
* *
17922545 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTC
645 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTC
* * * * * *
17922605 CGATCCGATCTTAGACTGGGAATGAAGTTCGTATGCCTAAGCCAACCGACGAAATGAGTAGGTGG
1 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG--CGAGG
* * * * *
17922670 ACGGGCAGGC-AGGCACTACGTCGGCCAGAGAGATGGGATGCGCACGCCGAGGATCAATAGGGTG
64 ACGGGCAGGCGA-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
*
17922734 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATT
128 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTTTAAATT
*
17922799 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTC
193 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * *
17922864 ACAATTTTTGAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTTTTCGGAACGAGGTTTGGCCCC
258 ATAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT-GGAAGGAGCTTTGGCCCC
* * *
17922929 AAATTTGGTAGAAGTGATCCTTGTATTTTTTTTTGCATGCACAAAAAAAGTCAGCTAAAAACTCG
322 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGCATGCACAAAAAAAATCAGCTAAAAACTCG
17922994 AAGTGTACAAGATTTT-TGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACT
387 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACT
*
17923058 GGCAGCAAACCTATAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
452 GGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
17923123 GATAGGGGGCCAATATAAGGGCCAAGTACCAACACCAATCACACATCATGTGTGCGCACA-CCCC
517 GATAGGGGGCCAATATAAGGGCCAAGTACCAACACCAATCACACATCA--TGTGCGCACACCCCC
* * *
17923187 TGGCCCCCCCGATCGCCGGAACACCAATGCCGCAGGTCAGGTTCTCCGGCGATGGTGCCCTGACG
580 TGGCCCCCCCGATCGTCGGAACACCAATGCCGCCGATCAGGTTCTCCGGCGATGGTGCCCTGACG
* ** *
17923252 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCATAACCCTCAATC
645 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTC
* *
17923312 CGGTGCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GG-C
1 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGGAC
* * * *
17923375 GGGCGGGCGAGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGCA
66 GGGCAGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * *
17923440 GGTGGGTTTAGGCATATCTTCATATTTCTGCATGGCAATGCCATTTTTATGGCTTTTAAATTCAT
131 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTTTAAATTCAT
17923505 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAA-ACGACTCGTTTTCTATTTTTCAT
196 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC-AAGACGACTCGTTTTCTATTTTTCAT
* * *
17923569 GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTGTAGAAGGAGTTTTGGCCCCAA
260 AATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT-TGGAAGGAGCTTTGGCCCCAA
* *
17923634 ACTTGGTAGACGTGATCCTTGCATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAA
324 ACTTGGTAGACGTGATCCTTGTATTTTTTTTTGCATGCACAAAAAAAATCAGCTAAAAACTCGAA
* *
17923699 GTGTACAAGATTTTGTGGCCACTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGG
389 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGG
17923764 CAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
454 CAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
* *
17923829 TAGGGGGCCAATATAAGGGCCAGGTACCAACACCCATCACACATCATGTGCGCACACCCCCTGG-
519 TAGGGGGCCAATATAAGGGCCAAGTACCAACACCAATCACACATCATGTGCGCACACCCCCTGGC
17923893 CCCCCCGATCGTCGGAACACCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGACAATGGTGC
584 CCCCCCGATCGTCGGAACACCAATGCCGCCGATCAGGTTCT-C--CG--G---CG---ATGGTGC
* * *
17923958 CCCGACGAAGAAAAATGGGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAG
638 CCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAG
17924023 TC
703 TC
* *
17924025 CGGTCCGCTCTTAGACTGGGAAAGAACTCCGTATGC
1 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
17924061 TTAGACTGGG
Statistics
Matches: 1310, Mismatches: 123, Indels: 42
0.89 0.08 0.03
Matches are distributed among these distances:
702 48 0.04
703 313 0.24
704 162 0.12
705 3 0.00
707 302 0.23
708 45 0.03
709 335 0.26
710 3 0.00
713 99 0.08
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (704 bp):
CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGGAC
GGGCAGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTTTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATA
ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTGGAAGGAGCTTTGGCCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTTTTTGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAACACCAATCACACATCATGTGCGCACACCCCCTGGCCC
CCCCGATCGTCGGAACACCAATGCCGCCGATCAGGTTCTCCGGCGATGGTGCCCTGACGAAGAAA
AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTC
Found at i:17924086 original size:26 final size:26
Alignment explanation
Indices: 17924034--17924086 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17924024 CCGGTCCGCT
*
17924034 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGCATG
* * *
17924060 CTTAGACTGGGGATGAACTCTGCATG
1 CTTAGACTGGGAAAGAACTCCGCATG
17924086 C
1 C
17924087 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGCATG
Found at i:17924985 original size:26 final size:26
Alignment explanation
Indices: 17924934--17924986 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17924924 CTGGTTCGAT
***
17924934 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17924960 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17924986 C
1 C
17924987 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17926501 original size:874 final size:874
Alignment explanation
Indices: 17923312--17927643 Score: 4565
Period size: 898 Copynumber: 4.9 Consensus size: 874
17923302 ACCCTCAATC
* *
17923312 CGGTGCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GGCG
1 CGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAACGAGCGAGGCG
* * * *
17923376 GGCGGGCGAGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGCAG
66 GG-AGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
17923441 GTGGGTTTAGGCATATCTTCATATTTCTGCATGGCAATGCCATTTTTATGGCTTTTAAATTCATA
130 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
17923506 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAA-ACGACTCGTTTTCTATTTTTCATG
195 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC-AAGACGACTCGTTTTCTATTTTTCATG
* * * * * *
17923570 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTGTAGAAGGAGTTTTGGCCCCAAA
259 ATTTTCGAAACCTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA
* *
17923635 CTTGGTAGACGTGATCCTTGCATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAG
324 CTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAC-AAAAAAATCAGCTAAAAACTCGAAG
* *
17923700 TGTACAAGATTTTGTGGCCACTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGC
388 TGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
17923765 AGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
453 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * *
17923830 AGGGGGCCAATATAAGGGCCAGGTACCAACACCCATCACACATCATGTGCGCACACCCCCTGGCC
518 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * *
17923895 CCC-CGATCGTCGGAACACC-AATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGACAATGGTGC
583 CCCTCGATCGTCGGAAC-CCTAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
* *
17923958 CCCGACGAAGAAAAATGGGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAG
646 CCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCT---
* * **
17924023 TCCGGTCCGCTCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGGATGAACTCTGCATGCC
708 T-CGATCCG------GA-T--------ACT--GTATGCTTAGACTGGGAATGAACTCTATATGCC
* * *
17924088 TAAGTCAACCCAAGAAATGAGCGTCCGGGCTCTTAACCGGCCAGAGGGGCGGGATGCGCAAGCCG
755 TAAGTCAACCCAAGAAATGAGCGTACGGGCGCTCAA-CGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * * *
17924153 GGGATCGGCCGGGTCCCCCTCTACGTGCTACCAATCTTGCTGA-TGTAACTCTAGG-T
819 GGGATCGACCGGGTCCCCCTCTGCGTGCTGCCAATCCTG-TTACCGTAAC-CTCGGTT
* * * * *
17924209 CTGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GAC
1 C-GGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAACGAGCGAGGC
* * * ** * * *
17924273 GGGTGGGCGGGTACTACGTCTTCCAAAGAGACGGGATGTGCAAGCTGTGGATCGATAGAGTGGTA
65 GGG-AGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
17924338 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
129 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
17924403 ACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
194 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* *** ** * *
17924468 ATTTTCGAAACTTTTTGTAGTTTTTGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCGAAA
259 ATTTTCGAAACCTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA
* * * *
17924533 CTTCGTAGACATGATCCCTT-TATTTTTTTTGGCATGCACACAAAAAATCAGCTAAATATTCAAA
324 CTTGGTAGACATGAT-CCTTGTATTTTTTTTGGCATGCACA-AAAAAATCAGCTAAAAACTCGAA
* *
17924597 TTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
387 GTGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
17924662 CAACAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
452 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
17924727 TAGGGGGCCAATATAAGGGCCAAGTATCAGCACCGATCGCACAACATGTGCGCACACCCCCCCGG
517 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG
* * * *
17924792 CCCCCCCGATTGTCGGAACCATAATGCCGCTGGTCTGGTTCTCCGACGATGCTCC-AGCGATGGT
581 CCCCCTCGATCGTCGGAACCCTAATGCCGC-GGTCAGGTTCTCCGACGATGCTCCGA-CGATGGT
* * *
17924856 GCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTC
644 GCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA--C-C
*
17924921 GGTCTGGTTCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCATATG
706 ---C---TTCGATC-----C--GG-AT--AC--TGTATGCTTAGACTGGGAATGAACTCTATATG
* * * * *
17924986 CCTAAGTCAACCCACA-AAACGAGCGTACCGACGCTCAACTGACCATAGGGGCGGGATGCGCAAG
753 CCTAAGTCAACCCA-AGAAATGAGCGTACGGGCGCTCAAC-GGCCAGAGGGGCGGGATGCGCAAG
* * * * * *
17925050 CCGAGGATCGACCGGATCCCCCTCTGTGTGCTGCCGATCCTGGTGCTGCCG--ACCTC-GTCC
816 CCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCAATCCT-GT--TACCGTAACCTCGGT-T
* *
17925110 CGGTCCCGATCTTA-ACTAGGATTGAACTCCGTTATGCACTAAGCCAACCGACGAAACGAGCG-G
1 CGGT-CCGATCTTAGACTAGGAATGAACTCCG-TATGC-CTAAGCCAAACGACGAAACGAGCGAG
* * * *
17925173 GC---AGACGGG-A--ATG-CGG-C--A-AG-C-CG-TG-G--A--C---GAT--ATGAGCGTGG
63 GCGGGAGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGAT-AGGGTGG
* **
17925214 TAGGTGGGTTTAGGCATTATCTT-ATATTTCTGCATGCCAAATGAGA-TTTTATGGGCTTGTAAA
127 TAGGTGGGTTTAGGCA-CATCTTCATATTTCTGCATGCC-AATGCCATTTTTAT-GGCTTGTAAA
* *
17925277 TTCATACAATGGTCCCTTAAGCC-TCACATGAAGTTTCTATGGCAAGACGACTCGTTTTTTAATT
189 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC-ATGGCAAGACGACTCGTTTTCT-ATT
* * * * *
17925341 TTTCACGAATTTTTGAAACCTTTTGCGGTTTGGGA-TTTTAAAAATTTTTTCGGAAGGAG-TTTG
252 TTTCATG-ATTTTCGAAACCTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTG
* * * *
17925404 GCCCGAAACTTGGTAGGCGTTATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
316 GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA-TCAGCTAAAA
*
17925469 ACTCGAAGTGTACAAGATTTTGTGACCACTTGGAAAAAGTGTCCCCATTTCAGACACTTTAATGG
380 ACTCGAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
17925534 CTACTGGCAGCAAACCTGAAAAACCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
445 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *
17925599 TGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGTGCACACC
510 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* *
17925664 CCCCGGCCCCCTCGATCG-CTGAAACCCTAATGCCGCAGGTCAGGTTCTCTGACGATGCTCCGAC
575 CCCCGGCCCCCTCGATCGTC-GGAACCCTAATGCCGC-GGTCAGGTTCTCCGACGATGCTCCGAC
* * **
17925728 GATGGTGCCCCAACGAAGAAAAATGC-AGCACCAACACATGCCTAAGCCCAGCATGTGCTACCGC
638 GATGGTGCCCCGACGAAGAAAAATGCGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTACCGC
17925792 AACCCTT-GATCCGG-T-CTG-AT-CTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCA
702 AACCCTTCGATCCGGATACTGTATGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCA
* * * * * * *
17925852 GGAAATGAGTGTGCGGGCGCTCAGTCGGCCAGAGGGGTGGGATGCGTC-AGTCGGGGATCGATCG
767 AGAAATGAGCGTACGGGCGCTCA-ACGGCCAGAGGGGCGGGATGCG-CAAGCCGGGGATCGACCG
17925916 GGTCCCCCTCTGCGTGCTGCCAATCCTGTTACCGTAACCGTCGGTT
830 GGTCCCCCTCTGCGTGCTGCCAATCCTGTTACCGTAACC-TCGGTT
* * * * *
17925962 CGATCCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAAACAACGAAACGAGCGGACGG
1 CGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAACGAGC-GA-GG
*
17926027 ACGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
64 -CGGG-AGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*** *
17926092 TAGGTGGGTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTTTAAATTC
127 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
17926157 ATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAA-A-GACTCATTTTCTATTGTTCA
192 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * *
17926220 TTATTTTCGAAACCTTTTACGGTTTGGTATTTTTTAAATTTTTTTTGGAAGGAGCTTTGGCCCCA
257 TGATTTTCGAAACCTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCA
*
17926285 AACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATCAGCCAAAAACTCGAA
322 AACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATCAGCTAAAAACTCGAA
* * *
17926350 GTGTACAAGAATTTGTGACCA-TTCGAAAAAAGTGTCCCCATTTTAGACAATTTAATGGCTACTG
387 GTGTACAAGATTTTGTGACCACTT-GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
17926414 GTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGG
451 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
17926479 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGCGCGCACACCCCCCGG
516 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * * **
17926544 CCCCCTCGATCGTTGGAACCCCAATGTCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTG
581 CCCCCTCGATCGTCGGAACCCTAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG
* * * *
17926609 CCCCGACGAAGAAAAATACGACACCAGCACATGCTCGAGCCTAGCATGTGCTACCGTAACCCTT-
645 CCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTTC
* ** * * ** *
17926673 GGTTTGG-T-CCG-AT-CTTAGATTGGGAATGAACTCCGTAT-CCTTAGACTGTGGATGAACTCC
710 GATCCGGATACTGTATGCTTAGACTGGGAATGAACTCTATATGCC-TA-A-----G-TCAAC-CC
* * * * ** *
17926733 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACCCACGAAACGAGCGTGCGGGCTC
766 --A-----AGA-----AATG-A--GCGTA---C-G-G---GCGCTC--AACG-GCCAGAGGG---
* * * * **
17926798 TCAGCCGGCCAGAGGGGCGAGATGCCCAAGCCGGGGATCGATCGGGTCCACCTCTGCATGCTATC
802 ---G-C----------G-G-GATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCC
* * * ** * *
17926863 GATCCTGCTGCCACAACCCTCAGTC
851 AATCCTGTTACCGTAA-CCTCGGTT
* * *
17926888 CGGTCCGATCTTAGACTAGGAATGAACTCCGTATCCCTAAGCCAACCGAGGAAACGAGCG-GGCG
1 CGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAACGAGCGAGGCG
* * * *
17926952 GGCGGGCGGTCACTACGCCGGCCAAAGAGACGGGATGCGTAAGCCATGGATCGATAGGGTGGTAG
66 GG-AGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * * *
17927017 GTGGGTTTAGGCACATCTTCCTATTTCTACGTGCCAATGCCTTTTTTATGGCATGTAAATTCATA
130 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
17927082 CAATGGTCCCTTAAGCCTCCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACT-
195 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TG
* * ** ** * * * * * *
17927146 ATTTTTGAAACTTTTTGTGGTTCAGGATTTTTTTAAATTTTTTCGAAAGTAGTTTTTGCCCCATA
259 ATTTTCGAAACCTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA
* * *
17927211 CTTGGTAGACGTGATCCTTGTATGTTTTTTGGCATGCATAAAAAAAATCAGCTAAAAACTCGAAG
324 CTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCA-CAAAAAAATCAGCTAAAAACTCGAAG
* *
17927276 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGTC
388 TGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
17927341 AGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGAGTTCTCGACGTTTGATGAGGGAT
453 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
17927406 AGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGG
518 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GG
* ** * * * **
17927471 CCCCC-CGATCGTCGAAAAAAC-AATGCTGTCGGTCAGGTTCTCCGACGATTCTCTGGTGATGGT
581 CCCCCTCGATCGTCG-GAACCCTAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGACGATGGT
* * * * *
17927534 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCTGTAACCC-T
644 GCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTT
* * * **
17927598 CGGTCTGG-T-C-CTAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAG
709 CGATCCGGATACTGTATGCTTAGACTGGGAATGAACTCTATATGCCTAAG
17927644 CTGATCAACA
Statistics
Matches: 2925, Mismatches: 346, Indels: 305
0.82 0.10 0.09
Matches are distributed among these distances:
849 4 0.00
850 21 0.01
851 20 0.01
852 127 0.04
853 8 0.00
854 3 0.00
856 1 0.00
858 6 0.00
859 2 0.00
861 4 0.00
862 3 0.00
863 2 0.00
865 1 0.00
866 2 0.00
867 1 0.00
868 5 0.00
869 4 0.00
870 1 0.00
872 2 0.00
873 28 0.01
874 364 0.12
875 68 0.02
876 2 0.00
877 56 0.02
878 229 0.08
879 297 0.10
880 31 0.01
881 25 0.01
882 2 0.00
884 2 0.00
886 1 0.00
887 2 0.00
888 1 0.00
889 3 0.00
890 2 0.00
891 1 0.00
893 1 0.00
894 5 0.00
895 3 0.00
897 7 0.00
898 517 0.18
899 21 0.01
900 239 0.08
901 19 0.01
902 29 0.01
903 2 0.00
905 7 0.00
906 6 0.00
907 8 0.00
909 1 0.00
910 1 0.00
912 1 0.00
913 1 0.00
920 1 0.00
922 158 0.05
923 3 0.00
924 104 0.04
925 201 0.07
926 245 0.08
927 14 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (874 bp):
CGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAACGAGCGAGGCG
GGAGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
TTTCGAAACCTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACT
TGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
TCGATCGTCGGAACCCTAATGCCGCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
CGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTTCGATCCG
GATACTGTATGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCAAGAAATGAGCGTAC
GGGCGCTCAACGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTG
CTGCCAATCCTGTTACCGTAACCTCGGTT
Found at i:17926763 original size:26 final size:26
Alignment explanation
Indices: 17926686--17926764 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
17926676 TTGGTCCGAT
* *
17926686 CTTAGATTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATG
17926712 CTTAGACTGTGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
17926738 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17926764 C
1 C
17926765 CTGAGTCAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.04
26 45 0.92
27 2 0.04
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17927616 original size:926 final size:925
Alignment explanation
Indices: 17925812--17927636 Score: 2626
Period size: 926 Copynumber: 2.0 Consensus size: 925
17925802 CCGGTCTGAT
* * * * *
17925812 CTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCAGGAAATGAGTGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
17925877 CGGCCAGAGGGGTGGGATGCGTCAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCAATCC
66 CGGCCAGAGGGGCGAGATGCGCCAGCCGGGGATCGATCGGGTCCACCTCTGCATGCTACCAATCC
* ** * * * * * * *
17925942 TGTTACCGTAACCGTCGGTTCGATCCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTACCACAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATCCCTAAGCCAA
*
17926007 ACAACGAAACGAGCGGACGGACGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
196 ACAACGAAACGAGCGGA-GGACGGGCAGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAA
* **
17926072 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCA
260 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* * *
17926137 TTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAAGA
325 TTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTCCACGTAAAGTTTCATGGCAAAGA
* * *
17926202 CTCATTTTCTATTGTTCATTATTTTCGAAACCTTTTACGGTTTGGTATTTTTTAAATTTTTTTTG
390 CTCATTTTCTATTGTTCACTATTTTCGAAACCTTTTACGGTTAGGTATTTTTTAAATTTTTTTCG
* * *
17926267 GAAGGAGCTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
455 AAAGGAGCTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATGTTTTTTGGCATGCAAAAAAAA
*
17926332 ATCAGCCAAAAACTCGAAGTGTACAAGAATTTGTGACCATTCGAAAAAAGTGTCCCCATTTTAGA
520 ATCAGCCAAAAACTCGAAGTGTACAAGAATTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGA
17926397 CAATTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTC
585 CAATTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTC
* *
17926462 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCAT
650 TCGACGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *** **
17926527 GCGCGCACACCCCCCGGCCCCCTCGATCGTTGGAACCCCAATGTCGTCGGTCAGGTTCTCCGGTG
715 GCGCGCACACCCCCCGGCCCCCTCGATCGTCGAAAAAACAATGTCGTCGGTCAGGTTCTCCGACG
*
17926592 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCTCGAGCCTAGCATG
780 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCTCGAGCCCAGCATG
* * *
17926657 TGCTACCGTAACCCTTGGTTTGGTCCGATCTTAGATTGGGAATGAACTCCGTATCCTTAGACTGT
845 TGCTACCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTGT
17926722 GGATGAACTCCGTATG
910 GGATGAACTCCGTATG
* * *
17926738 CTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACCCACGAAACGAGCGTGCGGGCTCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
17926803 CGGCCAGAGGGGCGAGATGC-CCAAGCCGGGGATCGATCGGGTCCACCTCTGCATGCTATCGATC
66 CGGCCAGAGGGGCGAGATGCGCC-AGCCGGGGATCGATCGGGTCCACCTCTGCATGCTACCAATC
* *
17926867 CTGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATCCCTAAGCCA
130 CTGCTACCACAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATCCCTAAGCCA
* * * * * *
17926932 ACCGAGGAAACGAGC-G-GG-CGGGCGGGCGGTCACTACGCCGGCCAAAGAGACGGGATGCGTAA
195 AACAACGAAACGAGCGGAGGACGGGCAGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAA
* *
17926994 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCCTATTTCTACGTGCCAATGCCT
260 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
*
17927059 TTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTCCACGTGAAGTTTCATGGCAAGAT
325 TTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTCCACGTAAAGTTTCATGGCAA-A-
* * * * * **
17927124 GACTCGTTTTTTATTTTTCACTATTTTTGAAACTTTTTGTGGTTCAGG-ATTTTTTTAAA-TTTT
388 GACTCATTTTCTATTGTTCACTATTTTCGAAACCTTTTACGGTT-AGGTA-TTTTTTAAATTTTT
* * * * *
17927187 TTCGAAAGTAGTTTTTGCCCCATACTTGGTAGACGTGATCCTTGTATGTTTTTTGGCATGCATAA
451 TTCGAAAGGAGCTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATGTTTTTTGGCATGCA-AA
* * *
17927252 AAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
515 AAAAAATCAGCCAAAAACTCGAAGTGTACAAGAATTTGTGACCATTCGAAAAAAGTGTCCCCATT
* * *
17927317 TCAGACACTTTAATGGCTACT-GTCAGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGT
580 TCAGACAATTTAATGGCTACTGGT-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGT
*
17927381 GAGTTCTCGACGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCA
644 GAGTTCTCGACGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
*
17927446 CATCATGTGCGCACACCCCCCCGGGCCCCC-CGATCGTCGAAAAAACAATG-CTGTCGGTCAGGT
709 CATCATGCGCGCACA-CCCCCC-GGCCCCCTCGATCGTCGAAAAAACAATGTC-GTCGGTCAGGT
* * ** * *
17927509 TCTCCGACGATTCTCTGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC-CTGA
771 TCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCTC-GA
* * *
17927573 GCCCAGCATGTGCTGCTGTAACCCTCGGTCTGGTCCTATCTTAGACTGGGAATGAACTCCGTAT
835 GCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
17927637 GCCTAAGCTG
Statistics
Matches: 794, Mismatches: 94, Indels: 22
0.87 0.10 0.02
Matches are distributed among these distances:
922 158 0.20
923 3 0.00
924 97 0.12
925 211 0.27
926 318 0.40
927 7 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (925 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGAGATGCGCCAGCCGGGGATCGATCGGGTCCACCTCTGCATGCTACCAATCC
TGCTACCACAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATCCCTAAGCCAA
ACAACGAAACGAGCGGAGGACGGGCAGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAG
CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
TTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTCCACGTAAAGTTTCATGGCAAAGAC
TCATTTTCTATTGTTCACTATTTTCGAAACCTTTTACGGTTAGGTATTTTTTAAATTTTTTTCGA
AAGGAGCTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATGTTTTTTGGCATGCAAAAAAAAA
TCAGCCAAAAACTCGAAGTGTACAAGAATTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGAC
AATTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCT
CGACGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
CGCGCACACCCCCCGGCCCCCTCGATCGTCGAAAAAACAATGTCGTCGGTCAGGTTCTCCGACGA
TGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCTCGAGCCCAGCATGT
GCTACCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTGTG
GATGAACTCCGTATG
Found at i:17928755 original size:702 final size:702
Alignment explanation
Indices: 17926868--17929057 Score: 2923
Period size: 702 Copynumber: 3.1 Consensus size: 702
17926858 CTATCGATCC
* * * * *
17926868 TGCTGCCACAACCCTCA-GTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATCCCTAAGCCA
1 TGCTGCCGCAACCCTCAGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
17926932 ACCGAGGAAACGAG-CG-GGCGGGCGGGC-G-G-TCACTACGCCGGCCAAAGAGACGGGATGCGT
66 ACTGATGAAACGAGCCGCGGCGGGCGGGCGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGC
*
17926992 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCCTATTTCTACGTGCCAATGC
131 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG--CA-----C-ATTT-T---T--CAA--C
* * *
17927057 CTTTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTCCACGTGAAGTTTCATGGCAAG
180 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * ** *
17927122 ATGACTCGTTTTTTATTTTTCACT-ATTTTTGAAACTTTTTGTGGTTC-AGGATTTTTTTAAATT
245 ACGACTCGTTTTCTATTTTTCA-TGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATT
* * *
17927185 TTTTCGAAAGTAGTTTTTGCCCCATACTTGGTAGACGTGATCCTTGTATGTTTT-TTGGCATGCA
308 TTTTCGTAAG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCA
* * *
17927249 TAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
371 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCC
*
17927314 ATTTCAGACACTTTAATGGCTACTG-TCAGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGG
436 ATTTCAGACACTTTAATGGCTACTGCT-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
17927378 TGTGAGTTCTCGACGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATC
500 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
*** *
17927443 GCACATCATGTGCGCACACCCCCCCGGGCCCCCCGATCGTCGAAAAAACAATGCTGTCGGTCAGG
565 GCACATCATGTGCGCACA-CCCCCC-GGCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGG
* * * * ** *
17927508 TTCTCCGACGATTCTCTGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGA
628 TTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCTGA
17927573 GCCCAGCATG
693 GCCCAGCATG
* * * *
17927583 TGCTGCTGTAACCCTC-GGTCTGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAG---
1 TGCTGCCGCAACCCTCAGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
17927644 -CTGAT-CAACAAAACATGCAGGCGGGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGAT
66 ACTGATGAAAC-GAGC-CGC-GGCGGGCGGGC-GGCGAGCACTACGTCGGCCAGAGAGACGGGAT
17927707 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCA
127 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG--CA----C--ATTT-T---T--C-
*
17927772 ATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGG
177 A-ACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
17927837 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
241 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA
**
17927902 TTTTTTCGTAAG-GTGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGAAATGC
306 TTTTTTCGTAAGAGT-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
17927966 ACAAATAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCC
370 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCC
* * * *
17928031 CATTTCAAACACTTTAATGGCTACTGCTAGCAAACTTGTAAAATCTCAAATGCTATTTAAAGGGG
435 CATTTCAGACACTTTAATGGCTACTGCTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
17928096 TGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGACATGTACCAGCACCCATC
500 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
17928161 GTACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGAAACCCCAATACCGCCGGTCAGGTT
565 GCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTT
* * * *
17928226 CTTCGGCGATGCTCCGACGATGGTGTCCCGGTGAAGAAAAATACGGCACCAGCACATGCCTGAAC
630 CTCCGGCGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCTGAGC
17928291 CCAGCATG
695 CCAGCATG
*
17928299 TGCTGCCGCAACCCT-AGGTCTGATCCGATCTTAGACTGCGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCAGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
17928363 ACTGATGAAACGAGCCGGCCGGCGGGCGGGCAGGCGAGCACTACATCGGCTAGAGAGACGGGATG
66 ACTGATGAAACGAGCC-G-CGGCGGGCGGGC-GGCGAGCACTACGTCGGCCAGAGAGACGGGATG
17928428 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA-TTTTC-A-CATTTTTATGGCT
128 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATTTTTCAACCATTTTTATGGCT
* *
17928490 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGGAAGACGACTCGTTTTC
193 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* *
17928555 TATTTTTCATGATTTTTTAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTGGGTAAGAGTT
258 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT-CGTAAGAGTT
*
17928620 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTCGGCATGCACAAAAAAATTCAGCTA
322 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
17928685 AAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAA
387 AAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
17928750 TGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTTGAGGT
452 TGGCTACT-GCTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
***
17928814 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTGAAGCACCCATCGCACATCATGTGCGCA
516 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * *
17928879 CACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCC
581 CACCCCCCGG-CCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCC
* * * *
17928944 GGCGGTGGTGCCCCGGTGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAACATG
645 GGCGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATG
* * *
17929002 GGCTGCCGCAACCCTCAGTTC-GATCCGATCTTAGACTGGGAATGAACTCTGTATGC
1 TGCTGCCGCAACCCTCAGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
17929058 TTAGACTGGG
Statistics
Matches: 1317, Mismatches: 127, Indels: 74
0.87 0.08 0.05
Matches are distributed among these distances:
701 126 0.10
702 253 0.19
703 150 0.11
704 4 0.00
705 1 0.00
707 1 0.00
710 4 0.00
711 6 0.00
712 1 0.00
713 1 0.00
714 1 0.00
715 64 0.05
716 152 0.12
717 13 0.01
718 240 0.18
719 205 0.16
720 90 0.07
721 5 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (702 bp):
TGCTGCCGCAACCCTCAGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACTGATGAAACGAGCCGCGGCGGGCGGGCGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGC
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATTTTTCAACCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGTAAGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGCTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCGGCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGAT
GGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATG
Found at i:17929067 original size:26 final size:26
Alignment explanation
Indices: 17929031--17929083 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17929021 TCGATCCGAT
* *
17929031 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17929057 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17929083 C
1 C
17929084 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:17930833 original size:26 final size:26
Alignment explanation
Indices: 17930804--17930856 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17930794 CTGGTCCGAT
*
17930804 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17930830 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17930856 C
1 C
17930857 CTAAGTCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17931744 original size:26 final size:26
Alignment explanation
Indices: 17931706--17931758 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17931696 CCGGTCCGAT
* * *
17931706 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
17931732 CTTAGACTAGGAATGAAATCCGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
17931758 C
1 C
17931759 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCGTATG
Found at i:17932028 original size:902 final size:900
Alignment explanation
Indices: 17928299--17932060 Score: 4666
Period size: 902 Copynumber: 4.2 Consensus size: 900
17928289 ACCCAGCATG
* * * * * *
17928299 TGCTGCCGCAACCCTAGGTCTGATCCGATCTTAGACTGCGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCT-TGTCCGGTCTGATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
17928364 CTGATGAAACGAGCCGGCCGGCGGGCGGGCAGGCGAGCACTAC-ATCGGCTAGAGAGACGGGATG
65 CCGACGAAACGAG-C-G--GGCGGGC-GGCGGGCGGGCACTACGA-CGGCCAGAGAGACGGGATG
17928428 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG--CA----C--A-TT-T---T--C-A
124 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
17928477 ---CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGG
189 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* ** * * *
17928539 AAGACGACTCGTTTTCTATTTTTCATGATTTTTTAAACTTTTTACGGTTCGAGATTTTTTAAAAT
254 AAGACAACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTAGGGATTTTTTAAAAT
* * * * *
17928604 TTTTTGGGTAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTCGGCATGC
319 TTTTTGGG-AACGAGTTTAGGCCCCAAACTTCGTAGACGTGATCCATATATTTTTGTTGGCATGC
* * * * *
17928668 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCC
383 ACAAAAAAAATCAGCTAAAAACTCGAAGTATACAAAATTTTATGACCATTTGAAAAAAGTGTCCC
** * *
17928733 CATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
448 CATTGCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
* * * **
17928798 TGCGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTGAAGCACCCATC
513 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACAAGCACCCATC
* * * * * *
17928863 GCACATCATGTGCGCACACCCCCC-GGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGG
578 GCACATCATGTGCGCACACCCCCCAGACCCCTCCGATCACCGGAACCCAAATGCCGCCGGTCAAG
** * * * *** *
17928927 TTCTCCGGTGATGCTCCGGCGGTGGTGCCCCGGTGAAGAAAAATAC-GACACCAGCACATGCCCG
643 TTCTCCGACGATGCTCTGACGATGGTGCCCC-ACAAAGAAAAATGCAG-CACCAGCACATGCCCG
* * * * *
17928991 AGCCCAACATGGGCTGCCGCAACCCTCAGTTCGATCCGATCTTAGACTGGGAATGAACTCTGTAT
706 AGCCCAGCATGTGCTGCCGAAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTAT
* * * * *
17929056 GCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCAGGCGCTCAG
771 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCACTCAA
* ** * * * * *
17929121 CCGGTAAGAGGGACGGGATGCGCAAGCCG-GAGATCGGCCGAGTCCCCCTCTACGTGCTGCCGAT
835 TCGGCCAGAGGGGCGGGATGCGCAAGCCGAG-GATCGGCTGGGTCCCCCTCTGCGTGCTGTCGAT
17929185 CC
899 CC
* * * * * * * *
17929187 TGCTACCGCAACCCTCGATCTGATCTAATCTTACACTGGGAATGTACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTTG-TCCGGTCTGATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
17929252 CCGATGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTATGCCGGCCA-AGGATACGGGATGCGCA
65 CCGACGAAACGAGCGGGCGGGC-GGCGGGCGGGCACTACGACGGCCAGA-GAGACGGGATGCGCA
* *
17929316 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTATGCACATCTTCATATTTCTGCATGCCAATGCC
128 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
17929381 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGA
193 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * *
17929446 CGACTCGTTCTCTATTTTTCATGATTTTCAAAACGTTTTGCGATTCGAGATTTTTTAAAATTTTT
258 CAACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTAGGGATTTTTTAAAATTTTT
* * * * * * *
17929511 TGAGAAGGAGTTTTGGCCGCAAACTTGGTAGATGTGATCCTTATATTTTTGTTGGCATGCAC--A
323 TGGGAACGAGTTTAGGCCCCAAACTTCGTAGACGTGATCCATATATTTTTGTTGGCATGCACAAA
* * * * *
17929574 AAAATTCATCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATT
388 AAAAATCAGCTAAAAACTCGAAGTATACAAAATTTTATGACCATTTGAAAAAAGTGTCCCC-ATT
* * * * *
17929639 -CAGACTCTTTAATGGCTACTCGCAGCAAACCTATAAAATCTAAAATGCTCTTTAAAGGGGTGTG
452 GCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * * *
17929703 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATC-GGTACCCATCGTA
517 AGTTCTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTA-CAAGCACCCATCGCA
* * * * * ** * *
17929767 CATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATATCGTCGGTCAGGTTC
581 CATCATGTGCGCACACCCCCCAGACCCCTCCGATCACCGGAACCCAAATGCCGCCGGTCAAGTTC
* * * * * *
17929832 TCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGACCGAGCC
646 TCCGACGATGCTCTGACGATGGTGCCCC-ACAAAGAAAAATGCAGCACCAGCACATGCCCGAGCC
* * *
17929897 CAGCTTGTGCTGTCGCAA-CC-C--T----T--GATC-----C---G---G---TC-G-AT-CTT
710 CAGCATGTGCTGCCGAAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTT
* * * *
17929935 AAACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC-AGCTG
775 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCACTCAATC-G
* * * * *
17929999 GCTAGAGGGGCGGAATGCGCAAGCCGGGGAAT-GGCAGGGTCCCCCTCTGCGTGCTGTGGATCC
838 GCCAGAGGGGCGGGATGCGCAAGCCGAGG-ATCGGCTGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * *
17930062 TGCTGCTGCAACCCTTGGCCGATCCGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAAC
1 TGCTGCCGCAACCCTTGTCCGGTCTGATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
17930127 CGACGAAACAAGCGGGCGGGC-G-GGG-GGGCACTACGCCGGCCAAAAAGACGGGATGCGCAAGC
66 CGACGAAACGAGCGGGCGGGCGGCGGGCGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGC
* *
17930189 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATGTCTGCATGCCAATGCCATT
131 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
17930254 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAGGTTTCATGGCAAGACGA
196 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAA
*
17930319 CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTGG
261 CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTGG
* *
17930384 GTAGGAGTTTAGGCCCCAAACTTCGTAGACGTGATCCATATATTTTTGTTGGCATGCACAAAAAA
326 GAACGAGTTTAGGCCCCAAACTTCGTAGACGTGATCCATATATTTTTGTTGGCATGCACAAAAAA
* * * ** * *
17930449 AATCAGCTAAAGAGTCGATGTATACACGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTGCAG
391 AATCAGCTAAAAACTCGAAGTATACAAAATTTTATGACCATTTGAAAAAAGTGTCCCCATTGCAA
17930514 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
456 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
17930579 CTTGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACAAGCACCCATCGCACATCA
521 CTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACAAGCACCCATCGCACATCA
* *
17930644 TGTGCGCACACCCCCCCGACCCCTCCGATCACCGGAACCCAAATGCCGTCGGTCAAGTTCTCCGA
586 TGTGCGCACACCCCCCAGACCCCTCCGATCACCGGAACCCAAATGCCGCCGGTCAAGTTCTCCGA
* *
17930709 CGATGCTCTGATGATGGTGCCCCACAAAGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCAT
651 CGATGCTCTGACGATGGTGCCCCACAAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCAT
* *
17930774 GTGCTGCCGAAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTG
716 GTGCTGCCGAAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTG
* * * *
17930839 GGAATGAACTCCGTATGCCTAAGTCAGCCCACGAAAATGAGCATACCGGCACTCAATCGGCCAGA
781 GGAATGAACTCCGTATGCCTAAGTCAACCCACG-AAACGAGCGT-GCGGCACTCAATCGGCCAGA
* * *
17930904 GGGGCGGGAGGCGCAAGCC-AGGGATCGGCTGGGTCCTCCTCTACGTGCTGTCGATCC
844 GGGGCGGGATGCGCAAGCCGA-GGATCGGCTGGGTCCCCCTCTGCGTGCTGTCGATCC
* *
17930961 TGCTGCCGCAACCCTCAGTCCGGTCTGATATTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCT-TGTCCGGTCTGATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
17931026 CCGACGAAACGAGCGGGCGGGAGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCACAA
65 CCGACGAAACGAGCGGGCGGG-CGGCGGGCGGGCACTACGACGGCCAGAGAGACGGGATGCGCAA
17931091 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
17931156 TTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
17931221 AATTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTAGGGATTTTTTAAAATTTTTT
259 AACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTT
* * * * *
17931286 TGGAACGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGGCATGC-CAAAA
324 GGGAACGAGTTTAGGCCCCAAACTTCGTAGACGTGATCCATATATTTTTGTTGGCATGCACAAAA
* * * * *
17931350 AAAATCAGCTAAAAACTTGAAGTGTACAAAATTTTATGACCATTTGAAAAAAGTGTCTCTATTTC
389 AAAATCAGCTAAAAACTCGAAGTATACAAAATTTTATGACCATTTGAAAAAAGTGTCCCCATTGC
*
17931415 AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
454 AAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
17931480 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACAAGCACCCATCGCACAT
* ** *
17931545 CATGTGCGCACACCCCCCAG-CCCCTTCGATCGTCGGAAACGC-AATGCCGCCGGTCAAGTTCTC
584 CATGTGCGCACACCCCCCAGACCCCTCCGATCACCGG-AACCCAAATGCCGCCGGTCAAGTTCTC
* * * * * *
17931608 CGGCGATGCTCTGGCGATGGTGCCCCGCGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAT
648 CGACGATGCTCTGACGATGGTGCCCCACAAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAG
* *
17931673 CATGTGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
713 CATGTGCTGCCGAAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
* * * * *
17931738 CTAGGAATGAAATCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGTGGCCATTCAATCGGCCA
778 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG-CACTCAATCGGCCA
* ** *
17931803 GAGGGGCGGGATGCGTAAGCCGAGGATCAACTGGGTCCCCCTCTGCGTGCTGCCGATCC
842 GAGGGGCGGGATGCGCAAGCCGAGGATCGGCTGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * *
17931862 TACTTCCACAACCCTTGTTCCGGTTTGATATTAGACTGTGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGCCGCAACCCTTG-TCCGGTCTGATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
17931927 CCGATGAAACGAGCGAGGCGGGCGGACGGGCGGGCACTACGACGGCTAGAGAGACAGGATGCGCA
65 CCGACGAAACGAGCG-GGCGGGCGG-CGGGCGGGCACTACGACGGCCAGAGAGACGGGATGCGCA
* * * * *
17931992 AGTCATAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAAGCC
128 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
17932057 ATTT
193 ATTT
17932061 GAAAAAATCA
Statistics
Matches: 2538, Mismatches: 258, Indels: 142
0.86 0.09 0.05
Matches are distributed among these distances:
870 267 0.11
871 54 0.02
872 259 0.10
873 1 0.00
874 61 0.02
875 121 0.05
876 5 0.00
877 1 0.00
878 2 0.00
879 1 0.00
881 5 0.00
883 1 0.00
884 73 0.03
886 4 0.00
887 3 0.00
888 68 0.03
889 1 0.00
890 1 0.00
892 6 0.00
893 2 0.00
894 2 0.00
895 2 0.00
896 1 0.00
897 3 0.00
898 42 0.02
899 81 0.03
900 70 0.03
901 340 0.13
902 404 0.16
903 389 0.15
904 268 0.11
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (900 bp):
TGCTGCCGCAACCCTTGTCCGGTCTGATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGCGGGCGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAA
CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTGG
GAACGAGTTTAGGCCCCAAACTTCGTAGACGTGATCCATATATTTTTGTTGGCATGCACAAAAAA
AATCAGCTAAAAACTCGAAGTATACAAAATTTTATGACCATTTGAAAAAAGTGTCCCCATTGCAA
ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACAAGCACCCATCGCACATCA
TGTGCGCACACCCCCCAGACCCCTCCGATCACCGGAACCCAAATGCCGCCGGTCAAGTTCTCCGA
CGATGCTCTGACGATGGTGCCCCACAAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGAAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCACTCAATCGGCCAGAGG
GGCGGGATGCGCAAGCCGAGGATCGGCTGGGTCCCCCTCTGCGTGCTGTCGATCC
Found at i:17932964 original size:26 final size:26
Alignment explanation
Indices: 17932928--17932983 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
17932918 CCAGTCCAAT
**
17932928 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17932954 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17932980 CTTA
1 CTTA
17932984 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17934597 original size:26 final size:26
Alignment explanation
Indices: 17934547--17934599 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17934537 CTGGTCCGAT
* **
17934547 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
17934573 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
17934599 C
1 C
17934600 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:17935489 original size:26 final size:26
Alignment explanation
Indices: 17935449--17935501 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17935439 CCGGTCCGAT
*
17935449 CTTAGACTGGCAATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
* *
17935475 CTTAGACTGGGAATGCACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
17935501 C
1 C
17935502 CCAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:17935588 original size:902 final size:897
Alignment explanation
Indices: 17933803--17936462 Score: 3785
Period size: 902 Copynumber: 3.0 Consensus size: 897
17933793 CCAGCATGTG
* * *
17933803 CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCAATCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
17933868 GACGAAACAAACGAAAGGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGACTGGATGCGCAAGCC
66 GACGAAAC-GA-G-CAGGCTGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCC
* * * *
17933933 GTGGATCGATAGGGTGGTAGGTGGGTTGAAGCACATCTTCACATTTCTGCATGCCAATGCCATTT
128 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
* *
17933998 TTATGGCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
193 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGAC
* *
17934063 TCGTTTT-TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGT
258 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* * * * *
17934127 AAGGAGTTTTTTCCCCAAACTTGGTAGATGTGACCCCTATATATTTTTTTTGGCATGCACAAAAA
323 AAGGAG--TTTTCCCCAAATTTGGTAGACGTGATCCTTGTATATTTTTTTT-GCATGCACAAAAA
* *
17934192 AATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTTAAAAAAGTGTCCCCATTTTA
385 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
*
17934257 GACACTTTAATGGCTACTGGA-AGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAG
450 GACACTTTAATGGCTACT-GACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
17934321 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACAT
514 TTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACAT
* * *
17934386 CATGTGCGCACACCCCCCGG-CCCCCCGATCACCAAAACCCCAATGCCGCCGGTCAGGTTCTCCG
579 CATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCTGCCGGTCAGGTTCTCCG
* * * * **
17934450 GCGATGATCCGACGATGGTGCCTC-AGTGAAAAAAAATACGGCACCAGCACATGCTCGAGCGTAG
644 GCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGCTCGAGCCAAG
*
17934514 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGA
708 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
* * *
17934579 CTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGTTCTGCCGGCCA
773 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCAGCCGGCCA
* * *
17934644 GAAGGGCGGGATACGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCATA
838 GAAGGGC-GGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTACCGATCATA
** * *
17934705 CTGCTGCAACCCTCGGTTCGATTCA-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
1 CTGCCACAACCCTCGG-TCCAATCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
17934769 CGATGAAACGAGCAGGCTGGCGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGTAAGCCGT
65 CGACGAAACGAGCAGGCTGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGT
* *
17934834 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATTCCATTTTT
130 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
* *
17934899 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGATGTCTC
195 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTC
* * * * *
17934964 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTTGGGATGTTTTAAAATTTTTTTGGAA
260 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
17935029 GGAGTTTTGGCCCCCAAATTTGGTAGACGTGATCCTTGTATATTTTTTTTGCATGCACAAAAAAA
325 GGAGTTTT---CCCCAAATTTGGTAGACGTGATCCTTGTATATTTTTTTTGCATGCACAAAAAAA
* * *
17935094 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGA
387 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
* * **
17935159 CACTTTAATGGCTACTCACAGCAAACCTGTAAAATCACAAATGCTCTTTAAGTTGGTGTGAGTTC
452 CACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
17935224 TCGAGGTTTGGTAAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGTACATCAT
517 TCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCAT
* *** * * *
17935289 GTGCGCATACCCCCTCGGCCCCCCCGATCGTTGGAACCCCAATGCTGCCGATCAAGTTCTCCGAC
582 GTGCGCACACCCCC-CGGCCCCCCCGATCGCCAGAACCCCAATGCTGCCGGTCAGGTTCTCCGGC
* * * *
17935354 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGGACATGCTCGAGCCCAGCAT
646 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCAAGCAT
* * * *
17935419 GTGCTGCCACAACCCTTGGTCCGGTCCGATCTTAGACTGGCAATGAACTCTGTATGCTTAGACTG
711 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTG
* * * * * * *
17935484 GGAATGCACTCCGTATGCCCAAGTCAACCCATGAAACGAGTGTGCAGGCGCTCAGCCGACCAGAA
776 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCAGCCGGCCAGAA
* * * * *
17935549 GGGCGTGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCTGATCCTA
841 GGGCG-GATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTACCGATCATA
* * * * *
17935607 CTGCCATAACCTTCGGTCCAATCAGATCTTAGACTGGGAATGAACTCCATATGCCCAAGCCGACC
1 CTGCCACAACCCTCGGTCCAATCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
17935672 GACGAAACGAGCAGG-TGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGT
66 GACGAAACGAGCAGGCT-GGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGT
* **
17935736 GGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTAAATATTTCTACATGCCAATGCCATTTTT
130 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
* ** *
17935801 ATGGCTTGTAAATTCATACAATTGTCCAGTAAGCCTTCGTGTGAAGTTTAATGGCAAGACGACTC
195 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTC
* *
17935866 GTTTTCTATTTTTCATC-ATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATGTTTTCGGA
260 GTTTTCTATTTTTCA-CGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
* * *
17935930 AGGAG---T-------TTTGGTAGACGTGATCCTTGTATATTTTGTTGGCATGCACAAAAAAAAT
324 AGGAGTTTTCCCCAAATTTGGTAGACGTGATCCTTGTATATTTTTTTTGCATGCACAAAAAAATT
* * *
17935985 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTGCCCTTTTTAAACA
389 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
* *
17936050 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
454 CTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
17936115 AAGGTTTGATAAGGGATAGGGGGCCAATATAGGGGCCAAGCACCAGCACCCATCGCACATCATGT
519 GAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGT
** *
17936180 GCGCACA-CCCCCAACCCCCCCAATCGCCAGAACCCCAATG-TCGCCGGTCAGGTTCTCCGGCGA
584 GCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCT-GCCGGTCAGGTTCTCCGGCGA
* * * * *
17936243 TGCTCTGACGATGGTGCCCCGACGAAGAAAAATATGACACCAGTACATGCCCGAGCCAAGCATGT
648 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCAAGCATGT
* * * *
17936308 GCTACCGCAACCCTCGGTCTGGTCCGATCTTATACTGGGAATGAACTCCGTCTGCTTAGACTGGG
713 GCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGG
* * * *
17936373 AAATAAACT-TGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGG
778 -AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCAGCCGGCCAGAAG
17936437 GGCAGGATGCGCAAGCCGGGGATCGA
842 GGC-GGATGCGCAAGCCGGGGATCGA
17936463 TACGGTGGTA
Statistics
Matches: 1565, Mismatches: 177, Indels: 47
0.87 0.10 0.03
Matches are distributed among these distances:
886 1 0.00
887 225 0.14
888 11 0.01
889 232 0.15
898 4 0.00
899 172 0.11
900 265 0.17
901 46 0.03
902 602 0.38
903 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (897 bp):
CTGCCACAACCCTCGGTCCAATCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCAGGCTGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
GAGTTTTCCCCAAATTTGGTAGACGTGATCCTTGTATATTTTTTTTGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACT
TTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCTGCCGGTCAGGTTCTCCGGCGATGC
TCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCAAGCATGTGCT
GCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCAGCCGGCCAGAAGGGCG
GATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTACCGATCATA
Found at i:17937105 original size:26 final size:26
Alignment explanation
Indices: 17937065--17937117 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17937055 CCGGTTTGAT
17937065 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
* *
17937091 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
17937117 C
1 C
17937118 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:17937967 original size:26 final size:26
Alignment explanation
Indices: 17937938--17937990 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17937928 CTCATCCGAT
* *
17937938 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
17937964 CTTAGACCGAGAATGAACTCCGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
17937990 C
1 C
17937991 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACCGAGAATGAACTCCGTATG
Found at i:17938845 original size:26 final size:26
Alignment explanation
Indices: 17938816--17938868 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17938806 CCGGTCTGAT
*
17938816 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
17938842 CTTAGACTGGGAATGCACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17938868 C
1 C
17938869 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17939758 original size:26 final size:26
Alignment explanation
Indices: 17939717--17939769 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17939707 CCGATCCGAT
*
17939717 CTTAGACTAGGTATGAAC-CCTGTATG
1 CTTAGACTAGGAATGAACTCC-GTATG
*
17939743 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17939769 C
1 C
17939770 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17940631 original size:26 final size:26
Alignment explanation
Indices: 17940602--17940654 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17940592 CCGGTCTGAT
17940602 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17940628 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17940654 C
1 C
17940655 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17941362 original size:885 final size:886
Alignment explanation
Indices: 17936427--17942097 Score: 7048
Period size: 887 Copynumber: 6.4 Consensus size: 886
17936417 GGTGCTCAGC
* * * * * *
17936427 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATACGGTGGTAGGTGGGTTTAGGAAAATCT
1 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * *
17936492 TAATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCT
66 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* *
17936557 TTGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATC-ATTTTTGAAACTTTTTGC
131 TCGTGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCA-CGATTTTTGAAACTTTTTGC
* * ** * *
17936621 GGTTCGGGATTTTTTACAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTTAG-AGACGTGATCT
195 GGTTCGGGATTTTTCAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC-TTGGTAGACGTGATCC
* * *
17936685 TTGTGTTTTTGTTGGCATGCATAAAAAAATACAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
259 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
17936750 TCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAATCTGTAAAATC
324 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
17936815 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGTGCCATTATAAGG
389 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* *
17936880 GCCAAG-A--AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCGATCGACGGAAC
454 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAAC
* * *
17936942 CCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATAGTGCCACGGCGAAGAAAAATGT
519 CCCAATGCCGTCGGTCAGGTTCTCCGGCGA---T-----G---GTGCCCCGACGAAGAAAAATGT
* * * * * *
17937007 GACACCAGGACATGCCTGAGCCCAGCGTGTGCTATCGCAA-CCTGCGGTCCGGTTTGATCTTAGA
573 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCT-CGGTCCGGTCTGATCTTAGA
*
17937071 CTGGAAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
637 CTGG-AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * *
17937136 TGAGCATGCGGGCGCTCAACCGGCTAGAGGGGCGGGATGTGCAAGCCGGGGATCGATCGGGTCCC
701 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGATCGGGTCCC
* * * *
17937201 CCTC---TGC-GT-G---CT--T-TCACAACCCTCGGTCTGGTCCAATCTTAGACTGGG-ATGAA
766 CCTCTGGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAA
* * * * * *
17937254 CTTCATATGCCTAAGCCAACCGACGAAACGAGTGGGTGGCCGGGCAGGCACTACGT
831 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGT
* * * ** *
17937310 CGGCCAAAGAGGCAGGATGCACAAGCCAAGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
17937375 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCT
66 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* *
17937440 TCGTGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGGG
131 TCGTGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCG
17937505 GTTCGGGATTTTTCAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
196 GTTCGGGATTTTTCAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
17937569 TGTAATTTTT-TTGGCTTGCACAAAAAAATTCAGCTAAAAACTC-AAGCGTAAAAGATTTTGTGA
260 TGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * * *
17937632 CCATTTGAAAAAA-AGTCTCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATG
324 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* **
17937696 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGTTGGATAGGGGGCCAATATAAGG
389 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* *
17937761 GCCAAGTA-CAGCACACATCGCACATCATGTGCGCACACCCCCCACGGCCCCCCCGATCGCCGGA
454 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCCGATCGTCGGA
* * ** *
17937825 AACCTAATGCCG-CTGGTCAATTTCTCTGGC-ATGGTGCCCCGACGAAGAAAAATGTGGCACCAG
517 ACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAG
* * * * *
17937888 CACATGCCCGAGCCAAGCATATGCTACCGCAACCCTCAGTCTC-ATCCGATCTTAGACTGGGAAT
581 CACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTC-CGGTCTGATCTTAGACT-GGAAT
* * * * *
17937952 GAACTCCGTATGCTTAGACCGAGAATGAACTCCGTATGCCTAAGTTAACCCACAAAACGAGTGTG
644 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
** * * * * * ** *
17938017 CGGGCGCTCAATCGGCCAGAGGGGTGGGATGCACAAGCTGGGGATCGGCCGGGT---CCTC--CT
709 CGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGGT
* * * **
17938077 -CTG-C-ATGCTGCTGCAGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
774 GCTGTCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
17938139 GCCTAAGCGAACTGACGAAATGAGCGGGCGGGTGGGCGGGCACTATG-
839 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGT
*
17938186 CTGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
1 C-GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
17938251 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAGTTCATACAATGGTCCCTTAAGCC
65 TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * * *
17938316 TTCGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TCTTCAAAATTTTTAC
130 TTCGTGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
* * *
17938380 GGTTCGAGATTTTTCAAAATTTTGTCAGAAGGCGTTTTGG-CCC---C-------ACGTGATCCT
195 GGTTCGGGATTTTTCAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
** * * *
17938434 TGTATTTTTGTTGGTGTGCATAAAAACATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
260 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
17938499 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCT
325 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
17938564 CAAATGCTCTTAAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
390 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * *
17938629 CCAAGCACCAACACCCATCGAACATCATGTGTGCACACCCCCCGGCCCCCCCGATCGTCGAAACC
455 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACC
* * *
17938694 CCAATGCCGTCGATCAGGTTCTCCAGCGATGCTCCGGTGATGGTGCCCCGTCGAAGAAAAATATG
520 CCAATGCCGTCGGTCAGGTTCT-C--CG--G---C---GATGGTGCCCCGACGAAGAAAAATGTG
* ***
17938759 GCACCAGCACATGCTCC-AGCCCAACATGTGCTGTTGCAACCCTCGGTCCGGTCTGATCTTAGAC
574 GCACCAGCACATGC-CCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGAC
* * *
17938823 TGAGAATGAACTCTGTATGCTTAGACTGGGAATGCACTCCGTATGCCTAAGTCAACCCATGAAAC
638 TG-GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * *
17938888 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATTGATAGGGTCCCT
702 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGATCGGGTCCCC
* * * * ** * *
17938953 CTCTGCATGCTGCCGATCCTACTACCGCAACCCTCAGTCCGGTCTGATCATAGACTAGGAATGAA
767 CTCTG-GTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAA
* * * * *
17939018 CTCCGTATGCCTAAGCCAACAGACGAAACGAGTGGGTGGGCAGGCGGGCAGTACGT
831 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGT
* * * *
17939074 CGACCGGAGAGGCGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * *
17939139 TCATATTTCTACGTGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGTCTCTTAAGCCT
66 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
17939204 TCGTGTGAAGTTTCATGGCAAGACGACTCGA-TTTCTATTTTTCACGATTTTTGAAACTTTTTGC
131 TCGTGTGAAGTTTCATGGCAAGACGACTC-ATTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
* * * * *
17939268 AGTTCGGGATTTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGACATGATCCT
195 GGTTCGGGATTTTTCAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
17939333 TGTATTTTTGTTGGCATGCGCAAAAAAATTCAGCTAACAACTCAAAGTGTACAAGATTTTGTGAC
260 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
17939398 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTATTGGCAGCAAACCTGTAAAATCT
325 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * * * *
17939463 CAAATGCT-TTCTAAGGGGGTTTCAGTTCTCGAGGTTTGATTAGGGATAAGGGGCCAATTTAAGG
390 CAAATGCTCTT-TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * *
17939527 GCCAAGCACCAGCACCCATTGCACATCATGTGCGCACACCCCCCTCAGCCACCCCGATCGTCGGA
454 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCCGATCGTCGGA
17939592 ACCCCAATGCCGTCGGTCAGGTTCCCCGGTAATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
517 ACCCCAATGCCGTCGGTCA--------GGT--T-CTCCGGCGATGGTGCCCCGACGAAGAAAAAT
* * * * * * *
17939657 GCGGCACCAGCACATGCCCGAGCCCAGCGTGTGCTGCTGCAACCCTCAGTCCGATCCGATCTTAG
571 GTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAG
* *
17939722 ACTAGGTATGAAC-CCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAGGTCAACCCACGA
636 ACT-GGAATGAACTCC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * ** * * * *
17939786 AATGAGTGTGCGGGCGCTCATACGGCCAGAGGGG-TAGGATGCGTAAGCCGAGGATCGGTCGAGT
699 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGA-GATGCGCAAGCCGAGGATCGATCGGGT
* ** ** ** * *
17939850 CCCCCTCTACGTGCTACCGATCCTGCTATCGCAAAGCTTAGCCCGGTCCAATCTTA-AGCTGGGA
763 CCCCCTCT-GGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCAATCTTAGA-CTGGGA
* *
17939914 AT-ACACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGAGCGGGCGGGCACTACGC
826 ATGA-ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGT
* *
17939971 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCA
1 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * *
17940036 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGCAAATTCATACAACGGTCCCTTAAGCCT
66 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
** * * *
17940101 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGGAAACTTTTTGA
131 TCGTGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTT-GAAACTTTTTGC
* ** *
17940166 TGTTCGGGATTTTTCAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCT
195 GGTTCGGGATTTTTCAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * * ** *
17940231 TGTAATTTTGTTGGCTTGCACAAAAAATTTCAGCTAAAAACTCGACCTGTAAAAGATTTTGTGAC
260 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
17940296 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAATCTGTAAAATCT
325 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
17940361 CAAATCCTCTTTAAGCGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
390 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * *
17940426 CCAAGTACCAGCACCCATCGCAAATCATGTGTGCACACCCCTCACGG-CCCCCCGATCGCCGGAA
455 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-C-CGGCCCCCCCGATCGTCGGAA
*
17940490 CCCCAATGCCGTCGGTCAGGTTCTCCGGC-ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
518 CCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCA
17940554 CATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAA
583 CATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACT-GGAATGAA
*
17940619 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG
647 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
** * * *
17940684 ATGCTCAGCCTGCCAGAAGGGCGAGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGTGTGC
712 GCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTG-GTGC
* * * ** **
17940749 TGTCGATCCTGTTGCCGCAACCTTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGC
776 TGTCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
*
17940814 CTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCACTACGT
841 CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGT
* * * *
17940860 CGGCCAGAGAGACAGGATGCGCAAGCCGTGGACCGATAGGGTGGTAGGTGGGCTTA-GCACATCT
1 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * *
17940924 TCATATTTCTGCATGCGAATGCCATTTTTATGGCTTGAAAATTCATACAACGGTCCCTTAAGCCT
66 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
**
17940989 TCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCG
131 TCGTGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCG
* * * *
17941054 GTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCTAAACTTGGTAGATGTGATCCTT
196 GTTCGGGATTTTTCAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * *
17941119 GTATTTTTGTTGGCATGCTCAAAAACATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACC
261 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* *
17941184 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTC
326 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
17941249 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGTTTTGATGAGGGATAAGGGGCCAATATAAGGGC
391 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * *
17941314 CAGGTACCAGCACCCATTGCACATCATGTGTGCACACCCCCTGGCCCCCCCGATCGTCGGAACCC
456 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCC
* * * *
17941379 TAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGATGAAGAAAAATATGGCACCAGCACAT
521 CAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACAT
* * *
17941444 GCTCGAGCCCAGCATGTGCTGCCGTAA----C---CC--TC-GA---T---CT---AT----TCC
586 GCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGAATGAACTCC
* * * *
17941486 G-AT-CTTAGACTGGGAATGAATTTCGTATGCC-AAGGTCAACCCACGAAAGGAGCGTGCGGACG
651 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA-GTCAACCCACGAAACGAGCGTGCGGGCG
* * * *
17941548 CTCAGTCGGCCAGAGGGGCGAGATACGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGT
715 CTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTG-GTGCTGT
* * * *
17941613 TGAT-CTGCTGCCACAACCTTC-GATCCGGTCCAATCTTAGACT-GGAATTGAACTTCGTATGCC
779 CGATCCTGCTGCCGCAACCCTCAG-TCCGGTCCAATCTTAGACTGGGAA-TGAACTCCGTATGCC
* * * * * *
17941675 GAAGCCAACCGACAAAACAAGTGGGTGACGGGCGGGCGGCCACTAC-A
842 TAAGCCAACCGACGAAACGAG-CGG-G-CGGGCGGGCGGGCACTACGT
* * * *
17941722 CTGACCAGAGAGACGGGATTCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATC
1 C-GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
17941787 TTCATATTTCTACGTGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
65 TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
** * * *
17941852 TTCACGTGAAGTTTCATGGCAACACGACCCATTTTCTATTTTTCAGGATTTTTGAAACTTTTTG-
130 TTCGTGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
* * * *
17941916 GGATT-GTGAATTTTTTC-ATATTTTTTTAGAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGAT
195 GG-TTCG-GGA-TTTTTCAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
17941979 CCTTGTATTTTTGTTGGCATGCACAAAAAATTTTAGCCAAAAACTCGAAGTGTACAAGATTTTGT
257 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* ** * *
17942044 AACCATTTGAAAAAAGCATCCCCATTTTAGACACTTTAAGGGCTACTGGCAGCA
322 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
17942098 CCCATCGCAC
Statistics
Matches: 4193, Mismatches: 481, Indels: 247
0.85 0.10 0.05
Matches are distributed among these distances:
859 5 0.00
860 64 0.02
861 113 0.03
862 4 0.00
863 73 0.02
864 285 0.07
865 46 0.01
866 67 0.02
867 123 0.03
868 25 0.01
869 1 0.00
870 5 0.00
871 5 0.00
872 1 0.00
873 177 0.04
874 8 0.00
875 4 0.00
876 77 0.02
877 220 0.05
878 182 0.04
879 2 0.00
880 2 0.00
881 114 0.03
882 36 0.01
883 290 0.07
884 13 0.00
885 314 0.07
886 57 0.01
887 599 0.14
888 167 0.04
889 75 0.02
892 1 0.00
897 218 0.05
898 280 0.07
899 219 0.05
900 10 0.00
901 299 0.07
902 1 0.00
904 1 0.00
907 1 0.00
909 5 0.00
911 2 0.00
912 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCGTGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCG
GTTCGGGATTTTTCAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCC
CAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACAT
GCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGAATGAACTCC
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
TCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGGTGCTGTCG
ATCCTGCTGCCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGT
Found at i:17944108 original size:26 final size:26
Alignment explanation
Indices: 17944072--17944122 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17944062 CTGGTCTGAT
*
17944072 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17944098 CTTAGATTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17944123 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17951554 original size:26 final size:26
Alignment explanation
Indices: 17951525--17951577 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17951515 CCGATCCAAT
*
17951525 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17951551 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17951577 C
1 C
17951578 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17953344 original size:26 final size:26
Alignment explanation
Indices: 17953306--17953358 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17953296 CTGGTCTGAT
* *
17953306 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17953332 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17953358 C
1 C
17953359 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17954669 original size:892 final size:891
Alignment explanation
Indices: 17949874--17955336 Score: 6552
Period size: 876 Copynumber: 6.1 Consensus size: 891
17949864 CATGACACCA
** * * * * * * ** *
17949874 GGGATCGATCAAGTCCCCCTTTACGTGCTGTCGATCCTGCTACCGCAACCCTAGGTCCAGTCCGA
1 GGGATCGATCGGGTCCCCCTCT-C-TGCTGCCGATCCTACTGCCGCAACCCTCGATCTGGTCTGA
* * * *
17949939 TCTTAGACTAGGAATAAACTTCGTATGCCTAAGCCATC--CG-ACGAAACGA----GCGGGCGGG
64 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGACGAACGAAACGAGCGGGCGGGCGGG
* * * * *
17949997 CACTATGCCGGCCAGA-AGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTGAGTTTAC
129 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * * *
17950061 GCACAACTTTATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCC
194 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
17950126 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTTA-AAA
259 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTAGAAA
* ** * * *
17950190 CTTTTTACAATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
323 CTTTTTGCGGTTCGGGATTTTTTAAATTTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGAC
* * * * * * *
17950255 GTGATCCCTGTATTTTTGTTGGCATTCAAAAAAAAAGTT-AGGTAAAAACTTGAAGTGTACAAGA
388 ATGATCCTTGTATTTTTGTTCGCATGCACAAAAAAA-TTCAGCT-AAAACTCGAAGTGTACAAGA
*
17950319 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCT
451 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
17950384 GTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
516 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCA
* *
17950448 ATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCTCCGATT
580 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCGATC
* * * * * * **
17950513 GTCGGAACACTAATGCCGCCGGTCAAGTTCTCTGGCGATGCTCCGAGGATGGCACCCCGACGAAG
644 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
* *
17950578 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCCACAACCC----TC-G---G-T
709 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-CCGCAACCCTAGTTCGGTCCGAT
17950634 C-----C--GG--T---C--CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
773 CTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * ** *
17950683 ACGATACAAGCGTGCGGGCACTCGGTCGGCCAGAAGGGTGGGATGCGCAAGTCG
838 ATGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCG
* * * * *
17950737 GGGATC-AGCCGGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCACAACCCTCGGTCTGGTCTG
1 GGGATCGA-TCGGGTCCCCCTCT-C-TGCTGCCGATCCTACTGCCGCAACCCTCGATCTGGTCTG
* * * * * * *
17950801 ATCTTCGACTGGGAATGAACTCCGGATGCCTTAGCTAACCGACGAAAC-AAGTGGGCGGGTGGGC
63 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGACG-AACGAA----ACGAGCGGGC
* *
17950865 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTG
122 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
17950930 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
187 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
17950995 TGGTCCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATT
252 TGGTCCC-TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * ** *
17951060 TTTGAAAACTTTTTGCGATGCGGGATTTTTTAAAATTTCCTT-GGAAGGAGTTTTGGCCCCAAAC
316 TTAG-AAACTTTTTGCGGTTCGGGATTTTTT-AAATTTTTTTCGGAAGGAGTTTTTGCCCCAAAC
* * *
17951124 TTCGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGT
379 TTGGTAGACATGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGC-TAAAACTCGAAGT
* * *
17951189 GTACAAGATTTTGTGACAATTTTGAAAAAAATGTCCCCATTTCAGACACTTTAATCGCTACTGGC
443 GTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
17951254 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
507 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
17951319 AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCTGGC
572 AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GGC
* * * * ** *
17951384 CCCCTCAATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGC
635 CCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
* * *
17951449 CTCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTAGG
699 CCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-CCGCAACCCTA-G
* * * * *
17951514 TCCGATCCAATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
762 TTCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* ** * * * * * *
17951579 TAAGTTAACTTATGAAACAAGCGTACAGACGCTCAGCCGGCTAGAGGGGCGGGATGCGCAAGTCG
827 TAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCG
* * * * *
17951644 AGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTACCGGAACCCTC-AGTCTAGTC-G
1 GGGATCGATCGGGTCCCCCTCT-C-TGCTGCCGATCCTACTGCCGCAACCCTCGA-TCTGGTCTG
* * * *
17951707 AATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAGGAGCAAAGCGGGCAGG
63 -ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGACG-AA--CG-AAA-CGAGCGGG
* * * *
17951772 CGGCCGGGCACTACGCCAGCCAGAGAGACAGGATGCGCATGCCGTGGATCGATAGGGTGGTAGGT
121 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
17951837 GGGTTTGGGCACATCTTCATATTTCTGCATGCCAATACCAATTTTATGGCTTGTAAATTCATACA
186 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
17951902 ATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTTAATAATT
251 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * *
17951967 TTCA-AAACTTTTTGCGGTTCCGGATTTTTAAAAATTTTTTT-GGAAGGA-TTTTTGGCCTCAAA
316 TT-AGAAACTTTTTGCGGTTCGGGATTTTT-TAAATTTTTTTCGGAAGGAGTTTTT-GCCCCAAA
** * * *
17952029 CTTTTTAGACCTGATGCTTGTATTTTTGTT-GCCATGCACAAAAAAATTCAGGTACAAACTCGAA
378 CTTGGTAGACATGATCCTTGTATTTTTGTTCG-CATGCACAAAAAAATTCAGCTA-AAACTCGAA
17952093 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
441 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
17952158 TAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
506 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
17952223 TAAGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACAACCCCCACG
571 T-AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCC-CG
* ** * *
17952288 GCCCCCCGATCGTCGGAACCCCCACCCCGCCAGTCAGGTTCTCCGACGAGGCTCCGACGATGGTG
633 GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG
* * * * *
17952353 CCCCGACGAAGAAAAATGCGGCACCAGCACAAGCCTGAGCCCAGCAAGTGCTGCTGCAACCCTCA
698 CCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-CCGCAACCCT-A
*
17952418 GTTCGGTCTGATCTTAGACTGGGAATGAA---C-T-T-C---G--T----ATG----CC-TA---
761 GTTCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * **
17952460 --AA-TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC-GAGGGGCTGAATGCGCAAGTA
826 CTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
17952521 G
891 G
* **
17952522 GGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGTTGCCGCAACCCTCGATCTGGTCTGA
1 GGGATCGATCGGGTCCCCCTC--TCTGCTGCCGATCCTACTGCCGCAACCCTCGATCTGGTCTGA
** * *
17952587 TCTTAGGTTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGG
64 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGACG-AACGA--A-ACGAGCGGGCGG
* *
17952652 GCGGGCACTACGCCGGCC-GAGAGACGGGATGCACAAGCCGTGGATCGATAAGGTGGTAGGTGGG
124 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
17952716 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
189 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * * * *
17952781 GTACCTTACGCCTTCACCTGAAGTTTCATGGCAAGACAACTCGTTTTTTATTTTTCACGATTTTG
254 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTA
* * *
17952846 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
319 GAAACTTTTTGCGGTTCGGGATTTTTTAAATTTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGT
* * * * * * *
17952911 AGACGTGATCCTTGTCTTTTTATTGGCGTGCACAAAAACATTCAGCTAAAAACTTGAAGTGTACA
384 AGACATGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGCT-AAAACTCGAAGTGTACA
* *
17952976 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGACTACTGGCAGCAAA
448 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
17953041 CCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
513 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGG
* **
17953106 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCATACACCCCCCCGGCCCCCCC
577 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCC
** * * *
17953171 GATCACCGAAACCCCAATGCCGCCGGTCAGGTTCACCGACGATGCTTCGACGATGGTGCCCCGAC
640 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * * * ** * * * * *
17953236 GAAAAAAAATGCT-ACAGCAGCACATTCCTAAGCCTAGCATTTGTTGCCGCAACCCTTGGTCTGG
705 GAAGAAAAATG-TGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-CCGCAACCCTAGTTC-GG
* *
17953300 TCTGATCTTAGACTGGGAATGAA-TTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAG
767 TCCGATCTTAGACTGGGAATGAACTT-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * * *
17953364 TCAACCCATGGAACGAGCATGCGGGCACTCAGTCGACCAAAGGGGC-GAGATGCGCAAGCTG
831 TCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAG-GATGCGCAAGCCG
* * * ** * **
17953425 GGGATCTATCGGGTTCCCCTCTGTGTGCTGCCGATCCTACTGTTGCAACCCTC-AGTCCGGTCCA
1 GGGATCGATCGGG-TCCCC-CTCTCTGCTGCCGATCCTACTGCCGCAACCCTCGA-TCTGGTCTG
* *
17953489 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AAACGGGCAGGCGGGC
63 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGACG-AACGAAACGAGCGGGCGGGC
* * * *
17953553 GGGCTGCGCTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGG
126 -GG--GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* ***
17953618 GTTTAGGCACATCTTCATATCTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
188 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
17953683 GGTCTCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTGCATGATTTT
253 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* *
17953748 CGAAACTTTTTGTGGTTCGGGATTTTTTAAATTTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGG
318 AGAAACTTTTTGCGGTTCGGGATTTTTTAAATTTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGG
* * *
17953813 TAGACATGATCCTTGTATTTTTGTTCACATGCATAAAAAAATTCTGCTAAAACTCGAAGTGTACA
383 TAGACATGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGCTAAAACTCGAAGTGTACA
* * *
17953878 AGATTTTGTGACCATTTGAAAAAACTGTCCCGATTTCAGACACTTTAATGGCTACTGGTAGCAAA
448 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
17953943 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGA
513 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG-
* *
17954008 CCAATATAAGGGCCAAGTACCAGCACCCGTCGCACATCATGCGCGCACACCCCCCGGCCCCCCGA
577 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGA
* * * *
17954073 TCGTCGGAACCTCAAGGCCGCCAGTCAGGTTCTCCGACGATGCTCCGACGATGGAGCCCCGACGA
642 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
* *
17954138 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACTCTCAGTTCGGTCC
707 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-CCGCAACCCT-AGTTCGGTCC
* * * *
17954203 AATCATAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAA
770 GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
** *
17954268 AACATGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCA
835 CCCATGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCG
* * * * * *
17954325 GGGATCGATCGGGTCCCCCTCTACTGTTGCCAATCCTGCTGCCGCAACCTTCGATCTAGTC-CAC
1 GGGATCGATCGGGTCCCCCTCT-CTGCTGCCGATCCTACTGCCGCAACCCTCGATCTGGTCTGA-
* *
17954389 TCTTAGACTGGGAATGAACTCCGTAAGCCTAAGCCAA-G-C-AACGAATCGAGCGGGCGGGCGGG
64 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGACGAACGAAACGAGCGGGCGGGCGGG
* * * * *
17954451 CACTACGCCGACCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGCGGCTTTTG
129 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
17954516 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAGAATGGTCCC
194 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
** * * * *
17954581 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAATTTCTATTTTTTACGACTTTAGAAAT
259 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTAGAAAC
* * * *
17954646 TTTTTGTGGTTCGGGATTTTTTAACA--TTTTTCGGAAGGA-ATTTTGTTCCCAAACTTGGTATA
324 TTTTTGCGGTTCGGGATTTTTTAA-ATTTTTTTCGGAAGGAGTTTTTG-CCCCAAACTTGGTAGA
* * *
17954708 CGTGATCCTTGTATTTTTTTTCGCATTCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
387 CATGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGCT-AAAACTCGAAGTGTACAAGA
* * *
17954773 TTTTGTGACCATTTGAAGAAAGTGTCCCCTTTTCAGACACTTTAATGGCTACTGGCAGCAAATCT
451 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
17954838 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGTCA
516 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCA
* *
17954903 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGACCCCCCCGATC
580 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-GCCCCCCGATC
* * * *
17954968 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTTG-CGATGGTGCCGCGATGAA
644 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC-CGACGATGGTGCCCCGACGAA
* ** * * ** *
17955032 GAAAAATGTGTCACCAGCACATGCCCGAGCCCAATATGTGCTGCTGCAACCCTTGGCCCAGTCCG
708 GAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-CCGCAACCC-TAGTTCGGTCCG
* * *
17955097 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
771 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * *
17955162 CCACGAAACGAGGGTACGGGTGCTCAGCCAGCCAAAGGGGCAGGATGCGAAAGCCG
836 CCATGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCG
** * * *
17955218 GGGATCGGCCGGGTCCCCCTCTACCTGCTGCCGATCCTACTGCCACAACCCT-TAGTCTGGTCTT
1 GGGATCGATCGGGTCCCCCTCT--CTGCTGCCGATCCTACTGCCGCAACCCTCGA-TCTGGTCTG
17955282 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC--CG-ACGAAACGAGCGGG
63 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGACGAACGAAACGAGCGGG
17955337 TGGACGGGTA
Statistics
Matches: 3965, Mismatches: 493, Indels: 253
0.84 0.10 0.05
Matches are distributed among these distances:
862 1 0.00
863 78 0.02
864 1 0.00
866 2 0.00
867 2 0.00
868 2 0.00
871 2 0.00
875 41 0.01
876 661 0.17
877 86 0.02
878 227 0.06
879 165 0.04
880 43 0.01
881 109 0.03
882 1 0.00
885 3 0.00
886 3 0.00
887 1 0.00
890 8 0.00
891 70 0.02
892 382 0.10
893 245 0.06
894 87 0.02
895 16 0.00
896 4 0.00
897 1 0.00
898 6 0.00
899 82 0.02
900 227 0.06
901 21 0.01
902 226 0.06
903 366 0.09
904 5 0.00
905 241 0.06
906 186 0.05
907 226 0.06
908 136 0.03
911 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (891 bp):
GGGATCGATCGGGTCCCCCTCTCTGCTGCCGATCCTACTGCCGCAACCCTCGATCTGGTCTGATC
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGACGAACGAAACGAGCGGGCGGGCGGGCA
CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTAGAAACTT
TTTGCGGTTCGGGATTTTTTAAATTTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACATG
ATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGCTAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAA
CCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
TGGCACCAGCACATGCCCGAGCCCAGCATGTGCTCCGCAACCCTAGTTCGGTCCGATCTTAGACT
GGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACA
AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCG
Found at i:17955128 original size:26 final size:26
Alignment explanation
Indices: 17955099--17955151 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17955089 CCAGTCCGAT
17955099 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17955125 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17955151 C
1 C
17955152 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17956665 original size:26 final size:27
Alignment explanation
Indices: 17956614--17956667 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
17956604 TTGGTCCGAT
*
17956614 CTTAGACTGGGAATTGAACTCTGTATG
1 CTTAGACTGGGAATTGAACTCCGTATG
17956641 CTTAGACTGGGAA-TGAACTCCGTATG
1 CTTAGACTGGGAATTGAACTCCGTATG
17956667 C
1 C
17956668 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (27 bp):
CTTAGACTGGGAATTGAACTCCGTATG
Found at i:17957375 original size:896 final size:886
Alignment explanation
Indices: 17955739--17957499 Score: 2524
Period size: 896 Copynumber: 2.0 Consensus size: 886
17955729 CTGGTCCGAT
* ** *
17955739 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAAACACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *** **
17955804 CGGCCAGAGGGGTAGGATGTGTAAGCCGGGGATCGGTCGAGTCACCCTCTATGTGCTACCGATCC
66 CGGCCAAAGGGGCAGGATGCGGAAGCCGGGGATCCACCGAGTCACCCTCTACCTGCTACCGATCC
* * *
17955869 TATTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTGTGCCTAAGCCAA
131 TACTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* *
17955934 GCAATGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
196 CCAACGAAACGA---GGC-GG-AGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
** * * * *
17955999 GTTGTGGATCGATAGGGTGGTAGGCGAGTTTTGGCACATCTTTATATTTTTGCGTGCCAATGCCA
256 GCCGTGGACCAATAGGGTGGTAGGCGAGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCA
** **
17956064 TTTTTATGGCTTGTAAATTTGTACAATGGTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAAAC
321 TTTTTATGGCTTCAAAATTCATACAATGGTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAAAC
* * * *
17956129 GACTCGTTTTTTATTTTCACGATTTTGGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
386 GACTCGTTTTCTATTTTCACAATTTTGGAAACTTCTTACGATTCGAGATTTTTTAAAATTTTTTC
* * * *
17956194 AAAAGGTCTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
451 AAAAGGACTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGCTCGCATGCACAAAAA
* * *
17956259 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTGCCCATTTCAG
516 ATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
17956324 ACACTTTAATGGCTATTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTT
581 ACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTT
* *
17956389 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCA
646 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* **
17956454 TGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
711 TGTGCACACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCT---GC
* * *
17956519 GATGCTATAGCGATGGTTCCCCGGCGAAGAAAAATGTGGCACCAGTACATGCCCGAGCCCAGCAT
773 GA--C---A---ATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
**
17956584 GTGCTATCGCAACCCTCAGTTTGGTCCGATCTTAGACTGGGAATTGAACTCTGTATG
830 GTGCTATCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATTGAACTCTGTATG
17956641 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAAACACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAAACACGAAACGAGCGTGCGGGCGCTCAGC
* * *
17956706 CGGCCAAAGGGGCAGGATGCGGAAGCCGGGGATCCACCGGGTCCCCCTCTACCTGCTGCCGATCC
66 CGGCCAAAGGGGCAGGATGCGGAAGCCGGGGATCCACCGAGTCACCCTCTACCTGCTACCGATCC
* * * *
17956771 TACTGCCACAACCCTTGGTCTGGTCCT-ATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
131 TACTGCCACAACCCTCGGTCCGGT-CTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
*
17956835 ACCGACGAAACGA-GC-G-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
195 ACCAACGAAACGAGGCGGAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
17956897 TGGACCAATAGGGTGGTGGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTT
260 TGGACCAATAGGGTGGTAGGCGAGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTT
** * *
17956962 TATGGCTTCAAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACT
325 TATGGCTTCAAAATTCATACAATGGTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAAACGACT
* *
17957027 CGTTTTCTATTTTTCACAATTTTGGAAACTTCTTGCGATTCGAGATTTTTTAAAATTTTTTCAGA
390 CGTTTTCTA-TTTTCACAATTTTGGAAACTTCTTACGATTCGAGATTTTTTAAAATTTTTTCAAA
* *
17957092 AGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTTTATTTTTGCTCGCATGCACAAAAAAAT
454 AGGACTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGCTCGCATGCAC-AAAAAAT
* * *
17957157 TCAGCAAAAAACTTGAAGTGTACAAGATTTTGTTACCATTTGAAAAAATTGTCCCCATTTCAGAC
518 TCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
17957222 ACTTTATTTGCTACTGGCACCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
583 ACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCT
* *
17957287 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG-CCCAGCGCCCATCGCACATCATG
648 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
17957351 TGCACACACCTCCCCGGCCCCCCCGATCGCTGGAACCCTAATGCCACCGGTCAGGTTCTTCGACA
713 TGCACACACCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTGCGACA
* * *
17957416 ATGGTGCCCCGACGAAGAAAAATGTGGGACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAA
777 ATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAA
*
17957481 CCCTCGGTCCGGTCCGATC
842 CCCTCAGTCCGGTCCGATC
17957500 GAGATTTTTT
Statistics
Matches: 768, Mismatches: 87, Indels: 25
0.87 0.10 0.03
Matches are distributed among these distances:
885 75 0.10
888 1 0.00
891 1 0.00
893 3 0.00
894 166 0.22
895 136 0.18
896 204 0.27
898 2 0.00
902 178 0.23
903 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (886 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAAACACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAAAGGGGCAGGATGCGGAAGCCGGGGATCCACCGAGTCACCCTCTACCTGCTACCGATCC
TACTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
CCAACGAAACGAGGCGGAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGACCAATAGGGTGGTAGGCGAGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTT
ATGGCTTCAAAATTCATACAATGGTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAAACGACTC
GTTTTCTATTTTCACAATTTTGGAAACTTCTTACGATTCGAGATTTTTTAAAATTTTTTCAAAAG
GACTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGCTCGCATGCACAAAAAATTCA
GCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
ACACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTGCGACAATGG
TGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCT
CAGTCCGGTCCGATCTTAGACTGGGAATTGAACTCTGTATG
Found at i:17957891 original size:432 final size:432
Alignment explanation
Indices: 17957066--17957931 Score: 1351
Period size: 432 Copynumber: 2.0 Consensus size: 432
17957056 TTCTTGCGAT
* *
17957066 TCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTTT
1 TCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCAAAACTTGGTAGACGTGATCCTTGT
* *
17957131 ATTTTTGCTCGCATGCACAAAAAAATTCAGCAAAAAACTTGAAGTGTACAAGATTTTGTTACCAT
66 ATTTTTGCTCGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * *
17957196 TTGAAAAAATTGTCCCCATTTCAGACACTTTATTTGCTACTGGCACCAAACCTGTAAAATCTCAA
131 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCACCAAACCTGTAAAATCTCAA
* * *
17957261 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
196 ATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAAGGATAAGGGGCCAATATAAGGGCCA
* * * * ***
17957326 AGCCCAGCGCCCATCGCACATCATGTGCACACACCTCCCCGGCCCCCCCGATCGCTGGAACCCTA
261 AGACCAGCACCCATCGCACATCAAGTACACACACCTCCCCGGCCCCCCCGATCGCCAAAACCCTA
* * *
17957391 ATGCCACCGGTCAGGTTCTTCGACAATGGTGCCCCGACGAAGAAAAATGTGGGACCAGCACATGC
326 ATGCCACCGGTCAGGTTCTTCGACAATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGC
17957456 CCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGA
391 CCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGA
* * *
17957498 TCGAGATTTTTTAAAATTTTTT-TGAAAGGATTTTTAGCCCCAAACTTGGTAGACGTGATCCTTG
1 TCGAGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTAGCCCAAAACTTGGTAGACGTGATCCTTG
* * * * *
17957562 TATTTTTGTTGGCATGCA-TAAAAAATTCAGCTAAAAACTCGTAGTGTACAAGATTTTGTGACCA
65 TATTTTTGCTCGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
17957626 TTTGAAAAAAGTGTGCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
130 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCACCAAACCTGTAAAATCTCA
17957691 AATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAAGGATAAGGGGCCAATATAAGGGCC
195 AATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAAGGATAAGGGGCCAATATAAGGGCC
* * *
17957756 AAGTACCAGCACCTATTGCACATCAAGTACGCACACC-CCCTCGGCCCCCCCGATCGCCAAAACC
260 AAG-ACCAGCACCCATCGCACATCAAGTACACACACCTCCC-CGGCCCCCCCGATCGCCAAAACC
* * **
17957820 CTAATGCTATCGGTCAGGTTCTTCGATGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACA
323 CTAATGCCACCGGTCAGGTTCTTCGACAATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACA
17957885 TGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGA
388 TGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGA
17957930 TC
1 TC
17957932 TTAGACTGGG
Statistics
Matches: 394, Mismatches: 37, Indels: 6
0.90 0.08 0.01
Matches are distributed among these distances:
431 170 0.43
432 224 0.57
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (432 bp):
TCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCAAAACTTGGTAGACGTGATCCTTGT
ATTTTTGCTCGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCACCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAAGGATAAGGGGCCAATATAAGGGCCA
AGACCAGCACCCATCGCACATCAAGTACACACACCTCCCCGGCCCCCCCGATCGCCAAAACCCTA
ATGCCACCGGTCAGGTTCTTCGACAATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGC
CCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGA
Found at i:17957981 original size:26 final size:26
Alignment explanation
Indices: 17957931--17957983 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17957921 CCGGTCCGAT
*
17957931 CTTAGACTGGGAATGAACTGTGTATG
1 CTTAGACTGGGAATGAACTGCGTATG
17957957 CTTAGACTGGGAATGAACCT-CGTATG
1 CTTAGACTGGGAATGAA-CTGCGTATG
17957983 C
1 C
17957984 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTGCGTATG
Found at i:17959362 original size:894 final size:883
Alignment explanation
Indices: 17957502--17959624 Score: 3000
Period size: 894 Copynumber: 2.4 Consensus size: 883
17957492 GTCCGATCGA
* *
17957502 GATTTTTTAAAATTTTTTTGAAAGGATTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
1 GATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* *
17957567 TTGTTGGCATGCATAAAAAATTCAGCTAAAAACTCGTAGTGTACAAGATTTTGTGACCATTTGAA
66 TTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
*
17957632 AAAAGTGTGCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
131 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * *
17957697 CTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAAGGATAAGGGGCCAATATAAGGGCCAAGTAC
196 CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * * * * ** *
17957762 CAGCACCTATTGCACATCAAGTACGCACACCCCCTCGGCCCCCCCGATCGCCAAAACCCTAATGC
261 CAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
* * * * * * *
17957827 TATCGGTCAGGTTCTTCGATGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGCCCGA
326 CACCGGTCAGGTTCTCCGACGATGGTGCCCCGACAAAGAAAAATGCGACACCAGCACATGCCCGA
* * **
17957892 GCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTGTGTATG
391 GCCCAGCATGTGCTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
17957957 CTTAGACTGGGAATGAACCTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGT
456 CTT-GA-TGGGAATGAACC-CGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCGCTCAGT
* * ** *
17958022 CGGCCAGAGGGGTAGGATGCGCAAGCTGAAGATCGGTCGAGTCCCCTTCTGTGTGCTGCCGATCC
517 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCTG-GTGCT-CCGATCC
* * * * * * * *
17958087 TACTGCCGTAACCCTTGGTCTGGTCCAATCTTAGATTGGAAATGAACTCCGTATGACTAAGCCAA
580 TGCTACCGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
17958152 CCGACGAAACGAGC---A-GGCGGGCGGGCGAGCACTACGTCGGCCATAGAGACGGGATGCGCAA
645 CCGACGAAACGAGCGGGAGGGCGGGCGGGCGGGCACTA-G-CAGCCAGAGAGACGGGATGCGCAA
17958213 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
708 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* * *
17958278 TTTTTCTGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
773 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * **
17958343 GACTCGTTTTTTAGTTTTCATGATTTTTGAAACTTTTTGCAGTTTCA
838 GACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTG-AGGTTGG
*
17958390 GATTTTTTAAAATTTTTTTGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
1 GATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
*
17958455 TTATTGGCATGCACAAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
66 TTGTTGGCATGCACAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * *
17958520 AAAAAGTGTCCCCATTTCAGACTCTTTAATTGCTACTGGCACCAAACCTGTAAAATCTCAAATGC
130 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
17958585 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTC
195 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
** ** *
17958650 CCAGTGCCCATCGCACATCATGTGCACACACCCTCCCCGGCCCCCCCGATCGTTGGAACCTCAAT
260 CCAGCACCCATCGCACATCATGTGCACACACCC-CCCCGGCCCCCCCGATCGCCGGAACCCCAAT
* * *
17958715 GCCACCGATCAGGTTCTCCGACGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCC
324 GCCACCGGTCAGGTTCTCCGACGATGGTGCCCCGACAAAGAAAAATGCGACACCAGCACATGCCC
* * *
17958780 GAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTAGTCTGATCATAGACTGGGAATGAACTCCGTA
389 GAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTA
* *
17958845 TGCTTGGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTCA
454 TGCTT-GA-TGGGAATGAAC-CCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCGCTCA
* * *
17958910 GTCGCCCAGAGGGGTGGGATGAGCAAGCCGGGGATCGTTCGAGTCCCCCTCTGCGTGCTACCGAT
515 GTCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCTG-GTGCT-CCGAT
* * * * * *
17958975 CCTGCTACCACAACCCTCAGTCCAATCTC-ATCTTAGACTGGGAATGAAATCCGTATGCCTAACC
578 CCTGCTACCGCAACCCTCGGTCTAGTC-CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
17959039 CAACCGACGAAACGAGCGGGAGGGCGGGCGGGTGGGCACTATGCCAGCCAGAGAGACGAGATGGG
642 CAACCGACGAAACGAGCGGGAGGGCGGGCGGGCGGGCACTA-G-CAGCCAGAGAGACGGGATGCG
* *
17959104 CAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATG
705 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
*
17959169 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGAAA
770 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
17959234 GACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTGTGG
835 GACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGAGGT-TGG
** * *
17959284 GATTTTTTAAAATTTTTTCGGTAGGATTTTTGGGCCCAAACTTGGTAGACGTGATCCTTATATTT
1 GATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* *
17959349 TTGTTGGCATGCACAAAAAACTTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACGATTTGA
66 TTGTTGGCATGCACAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * *
17959414 AAAAAGGGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTC
130 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
17959479 TCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATA
195 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * *** **
17959544 TCAGCACCCATCGCAAATCATGTGTGGACA-CCCCCCGG-CCCCCATATCGCCGGAACCCCAATG
260 CCAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATG
*
17959607 CCGCCGGTCAGGTTCTCC
325 CCACCGGTCAGGTTCTCC
17959625 ATCGATTCTC
Statistics
Matches: 1099, Mismatches: 127, Indels: 15
0.89 0.10 0.01
Matches are distributed among these distances:
888 82 0.07
889 190 0.17
890 316 0.29
891 38 0.03
892 6 0.01
893 5 0.00
894 462 0.42
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (883 bp):
GATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
TTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
CAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
CACCGGTCAGGTTCTCCGACGATGGTGCCCCGACAAAGAAAAATGCGACACCAGCACATGCCCGA
GCCCAGCATGTGCTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
CTTGATGGGAATGAACCCGTATGCCTAAGCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGC
CAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCTGGTGCTCCGATCCTGCTAC
CGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
AAACGAGCGGGAGGGCGGGCGGGCGGGCACTAGCAGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTTTATTTTTCATGATTTTTGAAACTTTTTGAGGTTGG
Found at i:17961180 original size:839 final size:841
Alignment explanation
Indices: 17958933--17962339 Score: 3792
Period size: 839 Copynumber: 4.0 Consensus size: 841
17958923 GTGGGATGAG
* * * * * *
17958933 CAAGCCGGGGATCGTTCGAGTCCCCCTCTGCGTGCTACCGATCCTGCTACCACAACCCTCAGTCC
1 CAAGCCGAGGATCGATCGAGTCCCCCTCTGTGTGCTACCGATCCTACTGCCACAACCCTCGGTCC
* * * *
17958998 AATCTC-ATCTTAGACTGGGAATGAAATCCGTATGCCTAACCCAACCGACGAAACGAGCGGGAGG
66 GATC-CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
** * * *
17959062 GCGGGCGGGTGGGCACT-ATGCC-AGCCAGAGAGACGAGATGGGCAAGCCGTGGATCGATATGGT
130 GCGGGCGGG-CAGCACTCA--CCGA-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
**
17959125 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAAT
191 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC------AT
* *
17959190 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGAAAGACGACTTGTTTTCTATTTTT
250 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * ** * *
17959255 CACGATTTTTGAAACTTTTTGTGGTGT-GGGATTTTTTAAAATTTTTTCGGTAGGATTTTTGGGC
315 CACGATTTTCGAAACTTTTTGCGGT-TCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCC
* *
17959319 CCAAACTTGGTAGACGTGATCCTTATATTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAACT
379 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * * *
17959384 CGAAGTGTATAAGATTTTGTGACGATTTGAAAAAAGGGTCCCCATTTCAAACACTTTAATGGCTA
444 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
17959449 CTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGA
509 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * * *
17959514 GGGATAGGGGGCCAATATAAGGGCCAAATATCAGCACCCATCGCAAATCATGTGTGGACAC-CCC
574 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA--TGCGCACACACCC
** * *
17959578 CCGG-CCCCCATATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-ATCGATTCTCCTACGA
637 CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAT-GATGCTCCGACGA
* ** * ** * * * *
17959641 TGTTGCCCCGGTGAAGAAAAATGTGACACCAGCACATGCTCGAGCCTAGCATGTGGTGTCACAAC
701 TGGTGCCCCGACGAAAAAAAATGCCACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAAC
*** ** ** * * * ***
17959706 CCTTGGTCTGGTCCGATCTCCGTA-TGCCTAAGTCAAACCCACGAAACGAGCGTGCGGGAGCTCA
766 CCTTGGTCCCATCCGATCTTAG-ACTG-GGAA-T-GAACTC-CG----TA---TGCCTAAG-TCA
* * * *
17959770 ACCGGCCAAAG-G-G-GCGGGATACG
818 ACC-ACGAAAGAGCGTGCGGG-CACC
* * *
17959793 CAAGCCGGGGATCGGTCGAGT-CCCC-CT-T-TG----C-ATGCTACTG---CAACCCTCGGT-C
1 CAAGCCGAGGATCGATCGAGTCCCCCTCTGTGTGCTACCGATCCTACTGCCACAACCCTCGGTCC
* * *
17959845 TAGTCCAATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGG
66 GA-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* **
17959910 GTGGGCGGGCAGGCACTACATTGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
130 GCGGGCGGGCA-GCACT-CACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* *
17959975 TAGGTGGGTTTAGGCACATCTTTATATTTCTACGTGCCAATGCCATTTTTATGGCTTGGAAATTC
193 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC------ATTC
* * *
17960040 ATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCA
252 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * *
17960105 TGATTTTCGAAACTTTTTGAGGTTCGGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCA
317 CGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCA
* *
17960169 AACTCGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TAAGCTAAAAACTCGA
382 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
17960233 AGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
447 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
17960298 GTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
512 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
*
17960363 TTAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCACACACCCTCCGG
577 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCACACACCC-CCGG
* * * * * *
17960428 CCCCCCCGATCACCGGAACCCCGATGCCGCCGGTCAAGTTATCCGATGATGCTCGGGCGATGGTG
641 CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTG
* * **
17960493 CCCCGACGAAAAAAAATGCCACTCCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTTG
706 CCCCGACGAAAAAAAATGCCACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTTG
17960558 GTCCCATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAATGAGCGTG
771 GTCCCATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CCACGAAA-GAGCGTG
*
17960623 CGGGCACT
834 CGGGCACC
* * *
17960631 C-AGTCGAGGATCGATCGGGTCCCCCTCTGTGTGCTACCGATCCTACTGCCACAACCCTTGGTCC
1 CAAGCCGAGGATCGATCGAGTCCCCCTCTGTGTGCTACCGATCCTACTGCCACAACCCTCGGTCC
* * *
17960695 GATCTAATCTTAGACCGGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGGGCGGG
66 GATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
*
17960760 CGGGCGGGCAGCAC-C-CCGACCAGAGAGACGGGATGCGCAAACCGTGGATCGATAGGGTGGTAG
131 CGGGCGGGCAGCACTCACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * *
17960823 GTTGGTTTAGGCACATCTACATATTTCTGCATGCCAATGCCATTTCTATGGC-TT-ATACAATGG
196 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCATTCATACAATGG
* *
17960886 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTTCACGATTTTCA
261 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCG
* * * *
17960951 AAACTTTTTGCGGTTTGGGATTTTTAAAAATTTTTTCGAAAGGAGTTTTGGTCCCAAACATGGTA
326 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
17961016 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
391 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
17961081 GTTTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
456 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * **
17961146 CTGTAAAATCTCGAATGCTCTTCAAGGAGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGC
521 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
17961211 CAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGTAC-CGCCCCCGGCCCCCCCG
586 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA--TGCGCACACACCCCCGGCCCCCCCG
** * ** * * * *
17961275 ATCGTAGGAACCCTAATGCCATCGGTCCGGTTCT-CTAGTGATGCTCCGGCGATGGTGCCCCGGC
649 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-TGATGCTCCGACGATGGTGCCCCGAC
* *** ** *
17961339 GAAGAAAAATGTGGCACCAGCACATGCCCGAGTTCAGCATGTGCTACCACAACCATCTGTCTGGT
713 GAAAAAAAATGCCACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACC--C--T-TGGT
*
17961404 CTGATCTTATTCTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGGCTAAGTC
773 C----C-----C-----AT---C-C-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
17961469 AACCCACGAAACGAGCGTGCAGGCGCTTAGCCGGC
817 AA-CCACGAAA-GAGCGTGC-GG-GC--A--C--C
* * * * *
17961504 CAGAGGGGCGGGATGAGCAAGCCGGGGATCGGCCAGGTCCCCCCTCTGTGTGCTGCCGATCTTGC
1 CA-A---GC-CGA-G-G--A-TC---GATC-G--A-GT-CCCCCTCTGTGTGCTACCGATCCTAC
* * * *
17961569 TGCCACAACCCTCGGTCTGGTCCCATCTTAGACTGGGAATGAACTGCGTATGCCTAAGCCAACCG
48 TGCCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * ** * * * *
17961634 ACAAAACGAGTGGGCGGGCAGAAGGGCGGGCACTC-CGTCGGCCAGAGAGACGGGATGCACAAGT
113 ACGAAACGAGCGGGCGGGCGGGCGGGC-AGCACTCAC--CGACCAGAGAGACGGGATGCGCAAGC
*
17961698 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
175 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
17961763 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
240 TTTATGGC------ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
*
17961828 CTCGTTTTCTATTTTCCACGA-TTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-
299 CTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* * * ** *
17961891 AGAAGGAGTTTTGGCCCCAAACTTGGTAAACCTGATCCTTGTATTTTTTTTGGTGTGCACAAAAC
364 A-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
17961956 AATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
428 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
17962021 GACACTTTAATGCCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
493 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
17962086 TCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAAC
558 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * * *
17962151 ATGTGCGCACATCCCCCGGACCCCCTCGATTGTCGAAACCCCAATGTCGCCGATCAGGTTCTCCG
623 ATGCGCACACA-CCCCCGG-CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * *
17962216 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGC-CACCAGCACATGCCCGAGCCCAG
686 ATGATGCTCCGACGATGGTGCCCCGACGAAAAAAAATG-CCACACCAGCACATGCCCGAGCCCAG
* *** ** *
17962280 CATGTGCTGTCACAACCCTCCATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGC
750 CATGTGCTGCCACAACCCTTGGTCCCATCCGATCTTAGACTGGGAATGAACTCCGTATGC
17962340 TTAGACTGGG
Statistics
Matches: 2186, Mismatches: 255, Indels: 194
0.83 0.10 0.07
Matches are distributed among these distances:
835 8 0.00
836 8 0.00
837 111 0.05
838 81 0.04
839 292 0.13
840 5 0.00
841 9 0.00
843 3 0.00
844 16 0.01
845 96 0.04
846 196 0.09
847 187 0.09
848 279 0.13
849 78 0.04
850 3 0.00
851 6 0.00
852 1 0.00
853 1 0.00
856 2 0.00
858 4 0.00
859 4 0.00
860 20 0.01
861 1 0.00
862 1 0.00
863 1 0.00
864 2 0.00
865 51 0.02
866 2 0.00
867 2 0.00
869 1 0.00
871 1 0.00
873 1 0.00
875 1 0.00
878 26 0.01
879 4 0.00
880 2 0.00
881 2 0.00
882 1 0.00
883 1 0.00
884 1 0.00
885 1 0.00
887 4 0.00
888 1 0.00
891 2 0.00
892 102 0.05
893 4 0.00
894 2 0.00
895 1 0.00
896 92 0.04
899 2 0.00
900 1 0.00
901 4 0.00
902 3 0.00
903 286 0.13
904 168 0.08
905 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (841 bp):
CAAGCCGAGGATCGATCGAGTCCCCCTCTGTGTGCTACCGATCCTACTGCCACAACCCTCGGTCC
GATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
CGGGCGGGCAGCACTCACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCG
AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCACACACCCCCGGCCCCCCCGAT
CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAA
AAAAAATGCCACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTTGGTCCCATCCG
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCACGAAAGAGCGTGCGGGCACC
Found at i:17962169 original size:903 final size:892
Alignment explanation
Indices: 17960638--17962548 Score: 2709
Period size: 903 Copynumber: 2.1 Consensus size: 892
17960628 ACTCAGTCGA
* * * * * *
17960638 GGATCGATCGGGTCCCCCTCTGTGTGCTACCGATCCTACTGCCACAACCCTTGGTCCGATCTAAT
1 GGATCGACCAGGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCACAACCCTCGGTCTGATCCAAT
* * *
17960703 CTTAGACCGGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGGGCGGGCGGGCGGG
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCGGG
* *
17960768 CAGCACCCCGACCAGAGAGACGGGATGCGCAAACCGTGGATCGATAGGGTGGTAGGTTGGTTTAG
131 CAGCACCCCGACCAGAGAGACGGGATGCACAAACCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
17960833 GCACATCTACATATTTCTGCATGCCAATGCCATTTCTATGGCTTATACAATGGTCCCTTAAGCCT
196 GCACATCTACATATTTCTGCATGCCAATGCCATTTCTATGGCTTATACAATGGTCCCTTAAGCCT
*
17960898 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTTCACGATTTTCAAAACTTTTTGCG
261 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTCCACGATTTTCAAAACTTTTTGCG
* * * *
17960963 GTTTGGGATTTTTAAAAATTTTTTCGAAAGGAGTTTTGGTCCCAAACATGGTAGACGTGATCCTT
326 GTTCGGGATTTTTAAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACATGGTAAACCTGATCCTT
*
17961028 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGTTTTTGTGACC
391 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
17961093 ATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
456 ATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTC
* * *
17961158 GAATGCTCTTCAAGGAGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
521 AAATGCTCTTCAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGC
* * * *
17961223 CAAGTACCAGCACCAATCGCACATCATGTGCGTACCGCCCCCGG-CCCCCCCGATCGTAGGAACC
586 CAAGTACCAGCACCAATCGCACAACATGTGCGCACAGCCCCCGGACCCCCCCGATCGTAGAAACC
* * * * * * *
17961287 CTAATGCCATCGGTCCGGTTCTCTAG-TGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGT
651 CCAATGCCACCGATCAGGTTCTC-AGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGT
* ** ** * * **
17961351 GGCACCAGCACATGCCCGAGTTCAGCATGTGCTACCACAACCATCTGTCTGGTCTGATCTTATTC
715 GCCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCATCCATCCGGTCCGATCTTAGAC
* * * *
17961416 TAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAAC
780 TAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCAACGAAAC
* * *
17961481 GAGCGTGCAGGCGCTTAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGG
845 GAGCATGCAGGCGCTCAGCCGACCAGAGGGGCGGGATGAGCAAGCCGG
* * * * *
17961529 GGATCGGCCAGGTCCCCCCTCTGTGTGCTGCCGATCTTGCTGCCACAACCCTCGGTCTGGTCCCA
1 GGATCGACCAGGT-CCCCCTCTGTGTGCTACCGATCCTGCTGCCACAACCCTCGGTCTGATCCAA
* *
17961594 TCTTAGACTGGGAATGAACTGCGTATGCCTAAGCCAACCGACAAAACGAGTGGGCGGGCAGAAGG
65 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGC----GG
* * * **
17961659 GCGGGCA-CTCCGTCGGCCAGAGAGACGGGATGCACAAGTCGTGGATCGATAGGGTGGTAGGTGG
126 GCGGGCAGCACC-CCGACCAGAGAGACGGGATGCACAAACCGTGGATCGATAGGGTGGTAGGTGG
* *
17961723 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
190 GTTTAGGCACATCTACATATTTCTGCATGCCAATGCCATTTCTATGGC-------TT-ATACAAT
*
17961788 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCACGA-TTT
247 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTCCACGATTTT
* * *
17961852 CGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGCCCCAAACTTG
312 CAAAACTTTTTGCGGTTCGGGATTTTTAAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACATG
* ** * *
17961916 GTAAACCTGATCCTTGTATTTTTTTTGGTGTGCACAAAACAATTCAGCTAAAAACTTGAAGTGTA
376 GTAAACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
17961981 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGCCTACTGGTAGCA
441 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGCCTACTGGCAGCA
* * *
17962046 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
506 AACCTGTAAAATCTCAAATGCTCTTCAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
* *
17962111 GCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAACATGTGCGCACATCCCCCGGACCCCC
571 GCCCAATATAAGGGCCAAGTACCAGCACCAATCGCACAACATGTGCGCACAGCCCCCGGACCCCC
* * * * * *
17962176 TCGATTGTCGAAACCCCAATGTCGCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
636 CCGATCGTAGAAACCCCAATGCCACCGATCAGGTTCTCAGACGATGCTCCGACGATGGTGCCCCG
** *
17962241 ACGAAGAAAAATGTGCCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCCATCCG
701 ACGAAGAAAAATGTGCCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCATCCATCCG
17962306 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAG
766 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAG
* * * *
17962371 TCAACCAACGAAACGAGCATGCGGGCGCTCAGCCGACCAGAGTGGTGGGATGCGCAAGCCGG
831 TCAACCAACGAAACGAGCATGCAGGCGCTCAGCCGACCAGAGGGGCGGGATGAGCAAGCCGG
* * * * * ** * *
17962433 GGATCGATCGGGTCCCTCTCTATGTGCTACCGATCCTGTTATCACAACTCTCAGTCTGATCCAAT
1 GGATCGACCAGGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCACAACCCTCGGTCTGATCCAAT
* *
17962498 CTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACAC-ACGAAACGAGCG
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-CGACAAAACGAGCG
17962549 TACGGGCGCT
Statistics
Matches: 893, Mismatches: 109, Indels: 24
0.87 0.11 0.02
Matches are distributed among these distances:
891 10 0.01
892 97 0.11
895 3 0.00
896 101 0.11
902 1 0.00
903 381 0.43
904 300 0.34
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (892 bp):
GGATCGACCAGGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCACAACCCTCGGTCTGATCCAAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCGGG
CAGCACCCCGACCAGAGAGACGGGATGCACAAACCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTACATATTTCTGCATGCCAATGCCATTTCTATGGCTTATACAATGGTCCCTTAAGCCT
TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTCCACGATTTTCAAAACTTTTTGCG
GTTCGGGATTTTTAAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACATGGTAAACCTGATCCTT
GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTCAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGC
CAAGTACCAGCACCAATCGCACAACATGTGCGCACAGCCCCCGGACCCCCCCGATCGTAGAAACC
CCAATGCCACCGATCAGGTTCTCAGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTG
CCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCATCCATCCGGTCCGATCTTAGACT
AGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCAACGAAACG
AGCATGCAGGCGCTCAGCCGACCAGAGGGGCGGGATGAGCAAGCCGG
Found at i:17962342 original size:26 final size:26
Alignment explanation
Indices: 17962313--17962365 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17962303 CCGGTCCGAT
*
17962313 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
17962339 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
17962365 C
1 C
17962366 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17962628 original size:159 final size:159
Alignment explanation
Indices: 17962339--17962688 Score: 411
Period size: 159 Copynumber: 2.2 Consensus size: 159
17962329 ACTCCGTATG
* * *
17962339 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCAACGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCAACGAAACGAGCATACGGGCGCTCAGC
* * * * * *
17962404 CGACCAGAGTGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCTCTCTATGTGCTACCGATCC
66 CGACCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCAGGTCCCCCTCTACGTGCTACCGATCC
** *
17962469 TG-TTATCACAACTCTCAG-TCTGATCCAAT
131 TGCTGCT-ACAACCCTCAGTTC-GATCCAAT
* *
17962498 CTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAA-CACACGAAACGAGCGTACGGGCGCTCCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCA-ACGAAACGAGCATACGGGCGCTCAG
* * * * *
17962562 CCGGCTAGAGGGGCGAGATGCGCAAGTCGGGGATC-AGTCAGGTCCCCCTCTGCGTGCTATCGAT
65 CCGACCAGAGGGGCGAGATGCGCAAGCCGGGGATCGA-TCAGGTCCCCCTCTACGTGCTACCGAT
** * * **
17962626 CCTGCTGCTGTAACCCTCGGTTCGGTCTGAT
129 CCTGCTGCTACAACCCTCAGTTCGATCCAAT
17962657 CTTAGACTGGGAATGAACTCCGTATGCCTAAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAG
17962689 CTAACCGATT
Statistics
Matches: 162, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
158 3 0.02
159 155 0.96
160 4 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCAACGAAACGAGCATACGGGCGCTCAGC
CGACCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCAGGTCCCCCTCTACGTGCTACCGATCC
TGCTGCTACAACCCTCAGTTCGATCCAAT
Found at i:17963397 original size:26 final size:26
Alignment explanation
Indices: 17963368--17963420 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17963358 CTGGTCCGAT
* *
17963368 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
*
17963394 CTTAGACTAGAAATGAACTCTGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
17963420 C
1 C
17963421 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTATG
Found at i:17965669 original size:26 final size:26
Alignment explanation
Indices: 17965633--17965685 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17965623 CTGGTCCGAT
*
17965633 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17965659 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17965685 C
1 C
17965686 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17966574 original size:26 final size:26
Alignment explanation
Indices: 17966537--17966589 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17966527 CTGGTCCGAT
* * *
17966537 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACGGGGAATAAACTCCGTATG
17966563 CTTAGACGGGGAATAAACTCCGTATG
1 CTTAGACGGGGAATAAACTCCGTATG
17966589 C
1 C
17966590 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGGAATAAACTCCGTATG
Found at i:17967474 original size:26 final size:26
Alignment explanation
Indices: 17967435--17967487 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17967425 CTGGTCTGAT
17967435 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
17967461 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17967487 C
1 C
17967488 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17968353 original size:26 final size:26
Alignment explanation
Indices: 17968324--17968376 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17968314 CCAGTCCGAT
* *
17968324 CTTAGATTGGGAATCAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
17968350 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
17968376 C
1 C
17968377 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:17970118 original size:25 final size:26
Alignment explanation
Indices: 17970090--17970141 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17970080 CCAGTCCGAT
17970090 CTTAGAC-GGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17970115 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17970141 C
1 C
17970142 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17971021 original size:26 final size:26
Alignment explanation
Indices: 17970985--17971037 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17970975 CCGGTCCGAT
*
17970985 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGAATGGGAATGAACTCCCTATG
*
17971011 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCCTATG
17971037 C
1 C
17971038 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCCTATG
Found at i:17971544 original size:901 final size:900
Alignment explanation
Indices: 17964915--17971955 Score: 9510
Period size: 898 Copynumber: 7.9 Consensus size: 900
17964905 GGATCAGCCC
* * *
17964915 ATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * *
17964980 GGCGA-TACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTT
66 GGC-ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * *** *
17965044 TTGGCACGTCTCCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGT
130 TAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * * * *
17965109 CCTTTAAGCCTTCACGTGGAGTTTCATAGCAAGATGACCCGTTTTCTATTTTTCACAATTTTTGA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* ** * *
17965174 AACATTTTATGGTTCGAGATTTTTTAAAATTTTTT-TGAAAGGAGCTTTTGGCCCCAAACTTGGT
260 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGGAG-TTTTGGCCCCAAACTTGGT
* *
17965238 AGATATGTGATCCTTGTATTTATGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
324 AGACA--TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
17965303 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCA
387 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * *
17965368 AACCTGTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCTCAAGGTTTGATGATGGATAGCG
452 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
**
17965433 GGCCAATATAA-GGTTAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCC
517 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* * * *
17965496 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTTCGGTGATGGTGCCCCG
582 CCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCG
* * * * *
17965561 ATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGAT-CTACCGCAACCCTCAGTCT
647 ACGAAGAAAAATGTGGCACCAGCACATG-CCGAGCCCAGCATG-TGCTGCTGCAACCCTCGGTCC
*
17965625 GGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
710 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
17965690 GTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCTGGGG
775 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * *
17965755 ATCGACCGGGTCCCTCTCTGTGTGCTGTCGATCCTGCTGCCGTAACCCTC-GATTTGGTCCA
840 ATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCAG-TCTGGTCCA
* * * *
17965816 ATCTTAGACTGGTAATAAACTCCGTATGCCTAAGCCAACCGATGAAACGAGTGGACGGGCAGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---G-CGGGCGGGCG
** * * * * *
17965881 GGCGGGCACTACGTTGGCTAAAGAGACGGGATGCGCAAGTCGTGGATCAATAAGGTGGTAGGTGG
62 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
17965946 GTTTAGACACATCTTCATATTTC-A-GCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACA
127 GTTTAGGCACATCTTCATATTTCTATG--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
17966009 ATGGTCCCTTGACCCATCACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
190 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
** ** * * *
17966074 TTCAAAACTTTTTAAGGTTTGGGGTTTTTTAAAATTTTTT-TGAAAGGAGTTTTGGCCCCAAACT
255 TTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGGAGTTTTGGCCCCAAACT
* *
17966138 TTGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTG
320 TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
17966203 TACAAGATTTTGTGACCATTTGAACAGAGTGTCCCCTTTTCAGACACTTTAATGGCTACTGGCAG
385 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
17966268 CAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
450 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
17966333 TGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAGCCCCCCGGCCC
515 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
* * * * *
17966398 CCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGGTCTCCGATGATGCTCTGACGATAGTGCCC
580 CCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCC
* *
17966463 TGACGAAGAAAAATGAGGCACCAGCACATGCTCGAGCCCAGCATGTGCTG-TCGCAACCCTCGGT
645 CGACGAAGAAAAATGTGGCACCAGCACATGC-CGAGCCCAGCATGTGCTGCT-GCAACCCTCGGT
* * * *
17966527 CTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACGGGGAATAAACTCCGTATGCCT
708 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
17966592 AAGTCAACCTATGAAACGAGCGTACGGGCGTTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCTGG
773 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * **
17966657 GGATCGGTCAGGTCCCCTTGTGCATGCTACCGATCCTACTGCCGCAACCCTCTA-TCTGGTCCA
838 GGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTGCCGCAACCCTC-AGTCTGGTCCA
* * *
17966720 ATCTTAGATTGGGAATGAACTCCGTATGACTAAGCCAATCGACGAAACGAGCGGGCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * * * * *
17966785 AGCACTACGTCAGCGAGAGAGACGGGATGCGCAAGCCGTGGATCGGTAGGATGGTAGGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *** *
17966850 AAGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCTTACAATGGTC
131 AGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * ***
17966915 CCTTAAGCCCTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTACAAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * *
17966980 ACTTTTTGCGGTTCTGGATTTTTTAAAATTTTTTCGG-TAGGATTTTTGGCCCCAAACTTGGTAG
261 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
17967044 ACGTGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAG
326 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
17967109 ATTTTGTGACCATTTGAAAAAAGTATCCCCATTTTAGACACTTTAATAGCTACTGGCAGCAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
17967174 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGCGATAGGGGGCC
456 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
17967239 AACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCAG-CCCCCCAA
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
** *
17967302 TCGTCGGAACCCCAATGCCGA-CGGTCAGGTTCTCTAACGATGCTCCGGCAATGGTGCCCC-AGC
586 TCGTCGGAACCCCAATGCC-ACCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA-C
** * ** * * * * *
17967365 GAAGAAAAATGCAGCAGCAGCACATGCCTGATTCCAGCATGTGCCG-TCGTAACCCTTGATCTGG
649 GAAGAAAAATGTGGCACCAGCACATGCC-GAGCCCAGCATGTGCTGCT-GCAACCCTCGGTCCGG
* *
17967429 TCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
712 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
17967494 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGTGCGGCGAGATGCGCAAGCCGAGGAT
777 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
** * * * * * *
17967559 CGGTTGGGTCCCCCTCTGCATG-TTTCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCG
842 CGGCCGGGTCCCCCTCTGCGTGCTGT-CGATCCTACTGCCGCAACCCTCAGTCTGGTCCA
* * * * * * *
17967618 ATCTTATACTAGGATTGAACTCCGTATGGCTAAGCCAACCAACGAAACGAGCGGGCGGGCAGGTG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * *
17967683 GGCACTATGCCGGCTAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
17967748 AGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGTC
131 AGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
17967813 CCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * *
17967878 ACTTTTTGAGGTTCGAGATTTTTTAAAATTTTTTCGG-AAGGAGTTTTGGCCGCAAACTTGGTAG
261 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
17967942 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATTGAAGTGTACAAG
326 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * * * *
17968007 ATTTTGTGACCATTTGAAAAAAGTATTCCCATTTCAGACACTTTAATTGCTACTGGCAACAAGCC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
17968072 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCC
456 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
17968137 AATATAAGGGCCAAGTACCAGCACCCATCGCAGATCATGTGCGCACACCCCCCCGACCCCCCCGA
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
* * * ** *
17968202 TCGCCGGAATCCCAAAGCCTTCGATCAGGTTCT-C--CGA--------CGATGGTGCCCCGACGA
586 TCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGA
** * *
17968256 AGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTTGCAACCCTCGGTCCAGTCC
651 AGAAAAATGTGGCACCAGCACATGCC-GAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCC
* * * *
17968321 GATCTTAGATTGGGAATCAACTCCATATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAA
715 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
17968386 CCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCAAAGGGGCGAGATGCGCAAGCTGGGGATCGG
780 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* * * *
17968451 TCGAGTCCCCCTGTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTCTGGTCCA
845 CCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCTGGTCCA
* *
17968507 ATCTTAGATTGGGAATGAACTCCGTATGACTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * *
17968572 AGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGGTAGGGT-GTAGGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*** * *
17968636 -GAGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGGTTGTAAATTCTTACAATGGT
131 AG-GCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * **
17968700 CCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTACGA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * *
17968765 AACTTTCTGCGGTTTC-AGATTTTTTAAAATTTTTTCGG-TAGGAGTTTTGGCCCCAAACTTGGT
260 AACTTTTTGCGG-TTCGGGATTTTTTAAAATTTTTTCGGAAAGGAGTTTTGGCCCCAAACTTGGT
* *
17968828 AGACATGACCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
324 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
17968893 AGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCTACTGCCAGCAAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
17968958 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATAAGGGATAAGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
17969023 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATCTGCGCACA-CCCCCCGGCCCCTCC
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
* * * ** * * *
17969087 AATCATCGAAACCCCAATGCCGTCGGTCAGGCTCTCCTG-CGACGCTCCAGCGATGGTGCCCCGA
584 GATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCC-GACGATGCTCCGGCGATGGTGCCCCGA
* *
17969151 CGAAGAAAAATGTGGCACCAGCACATGCCTGAGACCAGCATGTGCTGCTGCAACCCTCAGT---G
648 CGAAGAAAAATGTGGCACCAGCACATGCC-GAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGG
17969213 --CGATC-----C---------A------AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGT
712 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
** * * * *
17969255 CAAATCACGAAACGAGCGTGCAGGCGCTCAGCTGGCCAGAGCGG-GGGATGCGCAAGCCGAGGAT
777 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * ** * ** *
17969319 CGACTGGGTCCCCCTTTACGTGCTGTCGATTCTGTTGCTGCAACCCTC---C-AATCCG
842 CGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCTGGTCCA
* * * *
17969374 ATCTTAGACTGGGAATCAACTCCGTATGCCTAAGCCAACCGACGACACAAGCGGGCGGGCGAGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * ** * *
17969439 GGTACTGCATCGGCCAGAGAGACGGTATGCGCAAGCCGTGGATCGATAGGGTGGTACGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
17969504 AGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 AGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
17969569 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-ACTCGTTTTCAATTTTTCATGATTTTTGAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * * *
17969633 ACTTTTTGCGATTCGGGATTTTTTTAAATTTTTTCAG-AAGGATTTTTGGTCCCAAACTTGGTAG
261 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGGAGTTTTGGCCCCAAACTTGGTAG
** * * *
17969697 ATGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAGAACTCGAAGTGTACAAG
326 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
17969762 ATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
17969827 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAAGGATAGGGGGCC
456 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
17969892 AATATATGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
* *
17969957 TCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCTCGACGA
586 TCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGA
* * * * * *
17970022 AGAAAAATATGGTACCAGCACATGCCCGAGCCCAGGATGTGCTGCCGCAACCCTCAGTCCAGTCC
651 AGAAAAATGTGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCC
*
17970087 GATCTTAGAC-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAA
715 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
17970151 CTCACGAAACGAGCGTGCGGGCTCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATTGG
780 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* * * * * *
17970216 CCGGGTCCCCCTCTGTGTACTGCCAATCCTGCTGCCGCAACCCTCGGTCTGGTCCA
845 CCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCTGGTCCA
* * * * *
17970272 ATCTTAGACTGGGAATCAACTCCGTATGCATAAGCCAACTGACAAAACGA-C---TGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * *
17970333 GGCACTACGCCGGCC-GAAGAGACGAGATGCACAAGCCGTGGATCGATAGGGTGTTAGGTGGGTT
66 GGCACTACGCCGGCCAG-AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * * *
17970397 TGGGGACATCTTAATATTTCTAT-TGCCAATGCCATTTTTATGACTTGTAAACTCATACAATGGT
130 TAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
17970461 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGA-TTTTCA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * *
17970525 AACCTTTTTACGGTTTGGGATTTTTTAAAATTTTTCCGG-AAGGAGTTTTTGCCCCAAACTTGGT
260 AA-CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGGAGTTTTGGCCCCAAACTTGGT
* * *
17970589 AGACATGATCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCAAAGTGTACA
324 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
17970654 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGACTGCAAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
17970719 CCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTTGA-ATTATGATGAGGGATAGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT-TGATGAGGGATAGGGG
***
17970783 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAGAAACCC
518 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GGCCCCC
* * * ** *
17970848 CCGATCGTCAGAACCCCAATGCCATCGGTTAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCC-
582 CCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCG
* * **
17970912 AGCGAAGAAAAATGCGGCACTAGCACATGGCCGAGCCCAATATGTGCTGCTGCAACCCTCGGTCC
647 A-CGAAGAAAAATGTGGCACCAGCACAT-GCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCC
* *
17970977 GGTCCGATCTTAGACTGGGAATGAACTCCCTATGCTTAGAATGGGAATGAACTCCGTATGCCTAA
710 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
17971042 GTCAACCCACGAAACGAGCGTGCGGGCGCTAAGCCGGTCGGAGAGGCGGGATGCGCAAGCCGGGG
775 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * ** * *
17971107 ATCGGCCGGGTCCCCCTCTACGTGTTGTCAATCCTATTTTCGCAACCCTCAGTCCGATCCA
840 ATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCTGGTCCA
* * * * *
17971168 ATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGACGGGCGGACG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
**
17971233 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTTGTGGATCGATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
17971298 AGGTACATCTTCATATTTCTATGTGCCAACGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 AGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
17971363 CTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *
17971428 ACTTTTTGCGGTTCGGGATTTTTCAAAATTTTTTCAG-AGGGAGTTTTGGCCCCAAACTTGTTAG
261 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
17971492 ACGTGATCCTTATATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
326 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
17971557 ATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGTAGCAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
17971622 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
456 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
17971687 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCGCCCCCGA
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
* * * * *
17971752 TCGTCGGAACCCCAATGCCGCCCGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGA
586 TCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGA
* * * * ** *
17971817 AGAAAAATATGGCACTAGCACACGCCCGAGCCCAACATGTGCTGCCACAACCTTCGGTCCGGTCC
651 AGAAAAATGTGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCC
* * *
17971882 GATCTTAGACTGCGAGTGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAA
715 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
17971947 CCCACGAAA
780 CCCACGAAA
17971956 TGAGTGAGCA
Statistics
Matches: 5430, Mismatches: 615, Indels: 191
0.87 0.10 0.03
Matches are distributed among these distances:
866 3 0.00
867 411 0.08
868 222 0.04
869 3 0.00
871 55 0.01
872 68 0.01
873 7 0.00
878 1 0.00
879 1 0.00
886 1 0.00
887 40 0.01
888 409 0.08
889 335 0.06
890 6 0.00
892 2 0.00
893 160 0.03
894 439 0.08
895 130 0.02
896 197 0.04
897 9 0.00
898 908 0.17
899 15 0.00
900 771 0.14
901 429 0.08
902 197 0.04
903 39 0.01
904 359 0.07
905 213 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGGAGTTTTGGCCCCAAACTTGGTAG
ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
TCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGA
AGAAAAATGTGGCACCAGCACATGCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGC
CGGGTCCCCCTCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCTGGTCCA
Found at i:17971914 original size:26 final size:26
Alignment explanation
Indices: 17971885--17971937 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17971875 CCGGTCCGAT
*
17971885 CTTAGACTGCGAGTGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
*
17971911 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
17971937 C
1 C
17971938 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:17973113 original size:26 final size:26
Alignment explanation
Indices: 17973062--17973114 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17973052 CAAGTTCGCT
* **
17973062 CTTAGACTGGACCTGAACTCTGTATG
1 CTTAGACTGGACATGAACTCCATATG
17973088 CTTAGACTGGGA-ATGAACTCCATATG
1 CTTAGACT-GGACATGAACTCCATATG
17973114 C
1 C
17973115 CTAAGTCAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGACATGAACTCCATATG
Found at i:17975231 original size:893 final size:893
Alignment explanation
Indices: 17972193--17976229 Score: 5381
Period size: 893 Copynumber: 4.5 Consensus size: 893
17972183 CTGATCCGAT
* * * * *
17972193 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
17972258 CGACCAGAGGGGTGGGATCCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTGCCTCCTGTCGAT-T
66 CG-CCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCATGCTGTCGATCT
* * * * * * *
17972322 CTGCTACCGCAACCCTTGGTCCGATCTGATCTTAGACTGGGAATTAACTCTGTATGCCTCAGCCA
130 -TGCTGCCGCAACCCTTGGTCGGTTC-GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
* *
17972387 ACCGACGAAACGAGCGGGCGGG-GGGTCGCTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
193 ACCGACGAAACGAGCGGGCGGGCGGG-CACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTG
17972451 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-TGTGCCAATGCCATTTTT
257 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCT-TGCCAATGCCATTTTT
17972515 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
321 ATGGCTTGTAAATTCATACAATGG-CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * **
17972580 GTTTTCTATTTTTCATGATTTTCAAAACCTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAA
385 GTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAA
* * * *
17972645 GGAGTTTTAGCTCCAAGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATT
450 GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
17972709 CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
515 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
17972774 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTCAGGGAGTGTGAGTTCTT
580 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTC
* ** *
17972839 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTGCATCATAT
645 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
**
17972904 GCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTTGGCGA
710 GCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGA
** * * *
17972969 TGCTCCGACGATGGTGCCTTAACGAAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGTATGT
774 TGCTCCGACGATGGTGCCTCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * *
17973034 GCTGC-CACAACCCTCGGTC-AAGTTCGCTCTTAGACT-GGACCTGAACTCTGTATG
839 GCTGCTCACAACCCTCGGTCTGA-TCCGATCTTAGACTGGGA-ATGAACTCCGTATG
* * * *
17973088 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAGCCACGAAACGAGCGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
17973153 CGGCCAGAGGGGTGGGACGCGCAAGCTGGGGATCGGCCGGGTCCTCCTCTGCGTGCTGCCGATCC
66 C-GCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCATGCTGTCGATCT
* ** * * *
17973218 TGCTGCCGTAACCCTCAGCCGGGTCCGATCTTAGATTGGGAATGAACCCCGTATGCCTAAGCCAA
130 TGCTGCCGCAACCCTTGGTC-GGTTCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
17973283 CCGATGAAACGAGTGGGCGGGCGGGCACTACGCCGGCCAAAGAGACAGGATGCGCAAGCCGTGGA
194 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGA
* * *
17973348 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCAAATGCCATTTTTATG
259 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATG
*
17973413 GCTTGTAAATTCATACAA-------T--G---TCACGTGATGTTTCATGGCAAGACGACTCGTTT
324 GCTTGTAAATTCATACAATGGCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * ** * * *
17973466 TTTATTTTTCATGTTTTTTGAAACTTTTTGCGATTCAGAATTTTTTAAAATTTTTTCAGAAGGAG
389 TCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAG
* ** *
17973531 TTTTGGCCCCAAACCTCATAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGC
454 TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * * * *
17973596 TAAAAACTCGAAGTGTATAAGATTTAGGGACTATTTGAAAAAAGTGTTCCCATTTCAGACACTTT
519 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
17973661 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCGTTAAGGGAGTGTGACTTCTCAAGG
584 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGG
*
17973726 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA-TACCAGCACCCATCGCGCATCATGTGCGC
649 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
17973790 ACACCCCCCGGCCCCCCCGATCGTCGGAGCCCTAATGCCGCCAGTCAGGTTCT-C--CGA-----
714 ACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTC
* * *
17973847 CGATGAT-G-G-CTCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-A
779 CGACGATGGTGCCTCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * *
17973908 TCGCAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
844 TCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
17973958 CTTAGACTGGGAATGAACTCCGTTTACCTAAGTCAACCTAAGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGC
*
17974023 CGCCTAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCATGCTGTTGATCT
66 CGCC-AGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCATGCTGTCGATCT
* *
17974088 TGCTGCCGCAACCCTTGGTTCGGTTCGATCTTAGGTTGGGAATGAACTCCGTATGCCTAGGCCAA
130 TGCTGCCGCAACCCTTGG-TCGGTTCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
17974153 CCGACGAAACGAGCGGACGGGCGAGCACTACGTCGGCCAGAGAGACAGGATGCGTAA-CATGTGG
194 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGC-CGTGG
*
17974217 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
258 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTAT
* * * *
17974282 GGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGGAGTTTCATGGCAAGATGACTCGT
323 GGCTTGTAAATTCATACAATGG-CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
17974347 TTTCTATTTTTTACGATTTTCCAAACTTTTTACGGTTTGGGATTTTTTAAAA-TTTTTCAGAAGG
387 TTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGG
*
17974411 AGATTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
452 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
17974476 GCTAAAAGCTCGAAGTGTACAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
517 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
17974541 TTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
582 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAA
*
17974606 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGC
647 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* *
17974671 GCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGTGATGC
712 GCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGC
* * * *
17974735 TCCAACGATGGTGCCCCGATGAAGAAAAATGCGGTACCAGCACATGCCTGAGCCCAGCATGTGCT
777 TCCGACGATGGTGCCTCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
17974800 GCT-ACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
842 GCTCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
17974851 CTTAGACTGGGAATGAACTCCGTTTACCTAAGTCAACCTAAGAAACGAGCGTACGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGC
*
17974916 CGCCTAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCATGCTGTTGATCT
66 CGCC-AGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCATGCTGTCGATCT
* *
17974981 TGCTGCCGCAGCCCTTGGTTCGGTTCGATCTTAGGTTGGGAATGAACTCCGTATGCCT-AGTCCA
130 TGCTGCCGCAACCCTTGG-TCGGTTCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAG-CCA
* * * * **
17975045 ACCGACGAAACGAGCGGACGGGCGAGCACTACGTCGGCCAGAGAGACAGGATGCGTAAGATGTGG
193 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGG
17975110 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTAT
258 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTAT
* * *
17975175 GACTTGTAAATTCATACAATGGCCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGT
323 GGCTTGTAAATTCATACAATGGCCC-TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* ** * * * *
17975240 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCTGAATTTTTTAAAATTTTTTCGGAAGG
387 TTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGG
* *
17975305 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
452 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
17975370 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAAT
517 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
17975435 TTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
582 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAA
* ***** * * **
17975500 GGTAAAATCTCAAATGCTCTTTAAGGGGG----TGTGAGTTCTCAAGTACCAGCACCCATCGCAC
647 GGT----T-T--GATGAGGGAT-AGGGGGCCAATATAAGGGC-CAAGTACCAGCACCCATCGCAC
* * *
17975561 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCAGAACCCCTATGCCGTCGGTAAGGTTCTC
703 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * * *
17975626 CGACGATGCTCCGGCGACGGTGCCTCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCG
768 CGGCGATGCTCCGACGATGGTGCCTCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * * * *
17975691 GCATGTGATG-TCGCAACCTTCGGTCCGATCTGATCTTAGATTGGGAATGAACTTCGCATG
833 GCATGTGCTGCTCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** *
17975751 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAATTGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * ** *
17975816 TGGCCAGAGGGGCTGGATGCGCAAGCCGGAGATCGACCGAGTCCCCCTCTGTGTGCT-ACAGATC
66 -CGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCATGCTGTC-GATC
* * * * * *
17975880 CTGCTACCGCAACCCTCGGCCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 TTGCTGCCGCAACCCTTGGTC-GGTTCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
17975945 ACCGACGAAACGAGTGGGCGGGCGGGCAGGCGGGCACTACGCCGACTAGAGAGACGGGATGCGCA
193 ACCGACGAAACGA----GCGGGC--G--GGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCA
**
17976010 AGCCGTGGATCGATAAAAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-TGTGCCAATG
250 AGCCGTGGATCGAT-AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCT-TGCCAATG
* ** * *
17976074 TCATTTTTATGGCTTGTAAATTCATACAATGGTCCAATAAGCCTTCACATGAAGTTTCATGGCGA
313 CCATTTTTATGGCTTGTAAATTCATACAATGG-CCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
*
17976139 GACGACTCGTTTTCAATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
377 GACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
* *
17976204 TTTCAAAAGGAGTTTTGGTCCCAAAC
442 TTTCAGAAGGAGTTTTGGCCCCAAAC
17976230 GCCGGCCAGA
Statistics
Matches: 2780, Mismatches: 294, Indels: 122
0.87 0.09 0.04
Matches are distributed among these distances:
869 4 0.00
870 380 0.14
871 5 0.00
872 1 0.00
873 6 0.00
878 4 0.00
880 1 0.00
881 46 0.02
882 423 0.15
883 272 0.10
885 3 0.00
887 1 0.00
890 5 0.00
891 1 0.00
892 5 0.00
893 509 0.18
894 201 0.07
895 295 0.11
896 6 0.00
898 6 0.00
899 46 0.02
900 313 0.11
901 9 0.00
902 6 0.00
904 5 0.00
906 1 0.00
908 44 0.02
909 180 0.06
910 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (893 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGC
CGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCATGCTGTCGATCTT
GCTGCCGCAACCCTTGGTCGGTTCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTT
TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCG
ACGATGGTGCCTCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTC
ACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:17975506 original size:42 final size:42
Alignment explanation
Indices: 17975459--17975542 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
17975449 CAGAAAACCT
17975459 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
1 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
17975501 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
1 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
17975543 TACCAGCACC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (42 bp):
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
Found at i:17975777 original size:26 final size:26
Alignment explanation
Indices: 17975725--17975777 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17975715 CCGATCTGAT
* *
17975725 CTTAGATTGGGAATGAACTTCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
17975751 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
17975777 C
1 C
17975778 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:17976436 original size:243 final size:244
Alignment explanation
Indices: 17975996--17976471 Score: 742
Period size: 243 Copynumber: 2.0 Consensus size: 244
17975986 CCGACTAGAG
*
17975996 AGACGGGATGCGCAAGCCGTGGATCGATAAAAGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
1 AGACGGGATCCGCAAGCCGTGGATCGATAAAAGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* *
17976061 CTGTGTGCCAATGTCATTTTTATGGCTTGTAAATTCATACAATGGTCCAATAAGCCTTCACATGA
66 CTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCAATAAGCCTTCACAAGA
*
17976126 AGTTTCATGGCGAGACGACTCGTTTTCAATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGA
131 AGTTTCATGGCAAGACGACTCGTTTTCAATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGA
17976191 TTTTTTAAAATTTTTTCAAAAGGAGTTTTGGTCCCAAACGCCGGCCAGAA
196 TTTTTTAAAA-TTTTTCAAAAGGAGTTTTGGTCCCAAACGCCGGCCAGAA
** *
17976241 AGACGGGATCCGCAAGCCGTGGATCGATAGGA-TGGTAGGTGGGTTTA-GTACATCTTCATATTT
1 AGACGGGATCCGCAAGCCGTGGATCGATAAAAGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * * **
17976304 TTTTGTGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACAAGA
66 CTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCAATAAGCCTTCACAAGA
* ** * *
17976369 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATC-GTTTGGG
131 AGTTTCATGGCAAGACGACTCGTTTTCAATTTTTCATGATTTTCAAAACTTTTT-GCGGTTCGGG
* *
17976433 ATTTTTTAAAATTTTTCGAATGGAGTTTTGGTCCCAAAC
195 ATTTTTTAAAATTTTTCAAAAGGAGTTTTGGTCCCAAAC
17976472 TTGGTAGACC
Statistics
Matches: 211, Mismatches: 19, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
242 26 0.12
243 140 0.66
244 16 0.08
245 29 0.14
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.36
Consensus pattern (244 bp):
AGACGGGATCCGCAAGCCGTGGATCGATAAAAGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
CTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCAATAAGCCTTCACAAGA
AGTTTCATGGCAAGACGACTCGTTTTCAATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGA
TTTTTTAAAATTTTTCAAAAGGAGTTTTGGTCCCAAACGCCGGCCAGAA
Found at i:17978589 original size:26 final size:26
Alignment explanation
Indices: 17978560--17978612 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17978550 TGCCGTTAGT
17978560 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17978586 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17978612 C
1 C
17978613 GTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17979292 original size:777 final size:786
Alignment explanation
Indices: 17977779--17979331 Score: 2238
Period size: 777 Copynumber: 2.0 Consensus size: 786
17977769 GACCAAGAAA
*
17977779 GAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTG
1 GAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGAGTG
* * * * *
17977844 CGGGCGCGCAGCCGGCCATAGAGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCCACG
66 CGGGCACGCAACCGGCCAGAGAGGCGAGATACGCAAGCCAGGGATCGGTCGGGTCCCCCT---C-
* *
17977909 TGCTGGCGTTCCTGCTACCACAACCCTCAGTCTGGTATGATCTTAGACTGTGAATGAACTCCATA
127 T-CTGGCGTTCCTGCTA-CACAACCCTCAGTCTGGTATGATCTTAGACTGGGAAAGAACTCCATA
*
17977974 CTCCTAAGCCAACCGATGGAACGAGCGGGCAGGCGGGCGGGTAGGCACTACGTCGGCCAGAGAGA
190 CTCCTAAGCCAACCGATGAAACGAGCGGGCAGGCGGGC-GG-AGGCACTACGTCGGCCAGAGAGA
* * * * *
17978039 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTTTCT
253 CGGGATGCGCAAGCCATGGATCGATAGGGCGATAGGTGGGTTTAGGCACATCTTCACATTTGTAT
*
17978104 GTGTTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACATGAAG
318 GTG-TCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACATCAAG
* * *
17978169 TTTCATGGCAAGACGACTCTTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATT
382 TTTCATGGCAAGACGACTCTTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACAGTTCAAGATT
*
17978234 TTTTAAAATTTTGTCAGAAGGAATTTTGGCCCCAAACCTGGTAGACATGATCCTTGTATTTTTGC
447 TTTTAAAATTTTGTCAGAAGGAATTTTGCCCCCAAACCTGGTAGACATGATCCTTGTATTTTTGC
* * *
17978299 TGGCATGCACAAAAAAATTCAGCTAAAACTCCAAGTGTACAAGATTTTGTGACTATTTGAAAAAA
512 TGGCATGCACAAAAAAATTCAACTAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* *
17978364 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAAAGCTCTTT
577 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAAAGCTCTTT
* * * *
17978429 AAGGGGGTACAAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTCCCAGC
642 AAGGGGGTACAAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATAGAAGGGCCAAGTACCAGC
* * * *
17978494 ACCCATCGCACATCCTGTGCGCACACCCCCAGGCCCCCCGATCGTCGGAACCCTAATGCCGTTAG
707 ACCCATCGCACATCATGTGCGCAAACCCCCAGGCCCCCCGATCATCGAAACCCTAATGCCGTTAG
17978559 TCTTAGACTGGGAAT
772 TCTTAGACTGGGAAT
* * * *
17978574 GAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCGTAAGTCAACCCACGAAATGAGAGTG
1 GAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGAGTG
*
17978639 CGGGCACTCAACCGGCCAGAG-GGACGAGATACGCAAGCCAGGGATCGGTCGGGTCCCCCT-T-T
66 CGGGCACGCAACCGGCCAGAGAGG-CGAGATACGCAAGCCAGGGATCGGTCGGGTCCCCCTCTCT
* * * * *
17978701 -GCG-TGCTG-T-CGCAACCCTCAGTCCT-GTCCT-ATCTTAGATTGGGAAAGAACTCCGTA-TG
130 GGCGTTCCTGCTACACAACCCTCAGT-CTGGT-ATGATCTTAGACTGGGAAAGAACTCCATACT-
* **
17978759 CCTAAGCCAACCGATGAAATGAGCGGGTGGGCGGGC-G-GGCACTACGTCGGCCAGAGAGACGGG
192 CCTAAGCCAACCGATGAAACGAGCGGGCAGGCGGGCGGAGGCACTACGTCGGCCAGAGAGACGGG
* *
17978822 ATGCGCAAGCCATGGATCGATAGGGCGATAGGTGGGTTTTGGCACATCTTCATATTTGTATGTG-
257 ATGCGCAAGCCATGGATCGATAGGGCGATAGGTGGGTTTAGGCACATCTTCACATTTGTATGTGT
* *
17978886 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCA
322 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACATCAAGTTTCA
* * * ** *
17978951 TGGCAAGATGA-TTTGTTTTTTATTTTTCAAGATTTTTGATCCTTTTTGCAGTTCAAGATTTTTT
387 TGGCAAGACGACTCT-TTTTCTATTTTTCAAGATTTTTGAAACTTTTTACAGTTCAAGATTTTTT
* * * *
17979015 AAAATTCTT-TCAGAAGGAGTTTTGCCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
451 AAAATT-TTGTCAGAAGGAATTTTGCCCCCAAACCTGGTAGACATGATCCTTGTATTTTTGCTGG
*
17979079 CTTGCAC-AAAAAATTCAACTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
515 CATGCACAAAAAAATTCAACT-AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
17979143 GTTCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTGAAATGCTCTTTAA
579 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAAAGCTCTTTAA
***
17979208 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATAGAAGGGCCAAGTACCAGCAC
644 GGGGGTACAAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATAGAAGGGCCAAGTACCAGCAC
**
17979273 CCATCGCACATCATGTGCGCAAACCCCCCTGCCCCCCGATCATCGAAACCCTAATGCCG
709 CCATCGCACATCATGTGCGCAAACCCCCAGGCCCCCCGATCATCGAAACCCTAATGCCG
17979332 ATGCTCCAGT
Statistics
Matches: 683, Mismatches: 68, Indels: 32
0.87 0.09 0.04
Matches are distributed among these distances:
776 14 0.02
777 388 0.57
778 2 0.00
779 83 0.12
781 1 0.00
782 1 0.00
783 68 0.10
784 3 0.00
785 1 0.00
786 4 0.01
787 3 0.00
788 1 0.00
790 1 0.00
794 2 0.00
795 111 0.16
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (786 bp):
GAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGAGTG
CGGGCACGCAACCGGCCAGAGAGGCGAGATACGCAAGCCAGGGATCGGTCGGGTCCCCCTCTCTG
GCGTTCCTGCTACACAACCCTCAGTCTGGTATGATCTTAGACTGGGAAAGAACTCCATACTCCTA
AGCCAACCGATGAAACGAGCGGGCAGGCGGGCGGAGGCACTACGTCGGCCAGAGAGACGGGATGC
GCAAGCCATGGATCGATAGGGCGATAGGTGGGTTTAGGCACATCTTCACATTTGTATGTGTCCAA
TGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACATCAAGTTTCATGGC
AAGACGACTCTTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACAGTTCAAGATTTTTTAAAAT
TTTGTCAGAAGGAATTTTGCCCCCAAACCTGGTAGACATGATCCTTGTATTTTTGCTGGCATGCA
CAAAAAAATTCAACTAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
TTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTA
CAAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGC
ACATCATGTGCGCAAACCCCCAGGCCCCCCGATCATCGAAACCCTAATGCCGTTAGTCTTAGACT
GGGAAT
Found at i:17979464 original size:26 final size:26
Alignment explanation
Indices: 17979426--17979478 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17979416 CCGGTCCGAT
*
17979426 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17979452 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17979478 C
1 C
17979479 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17980425 original size:283 final size:283
Alignment explanation
Indices: 17979918--17980462 Score: 957
Period size: 283 Copynumber: 1.9 Consensus size: 283
17979908 GAGTTTTGGA
* * * * *
17979918 CCCAAACTTGGTAGACGTGATCCATGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAAC
1 CCCAAACATGGTAGACGTAATCCATGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAAA
* * *
17979983 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTACTGGCT
66 TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
17980048 ACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
131 ACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATG
17980113 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-ACACATCATGTGCGCACACCC
196 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGA-ACATCATGTGCGCACACCC
17980177 CTCTGCCCCCCCGATCGTCGGAAC
260 CTCTGCCCCCCCGATCGTCGGAAC
* *
17980201 CCCAAACATGGTAGACGTAATCCATGTATTTTTATTGGCATGTATAAAAAAATTCAGCTAAAAAA
1 CCCAAACATGGTAGACGTAATCCATGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAAA
17980266 TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
66 TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
17980331 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATG
131 ACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATG
*
17980396 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGTGCACACCCC
196 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGCACACCCC
17980461 TC
261 TC
17980463 CGGGCCCTCT
Statistics
Matches: 248, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
283 247 1.00
284 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (283 bp):
CCCAAACATGGTAGACGTAATCCATGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAAA
TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGCACACCCC
TCTGCCCCCCCGATCGTCGGAAC
Found at i:17980637 original size:26 final size:26
Alignment explanation
Indices: 17980608--17980660 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17980598 CCAGTCCGAT
17980608 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17980634 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17980660 C
1 C
17980661 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.