Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 102 of 117
Found at i:17981542 original size:26 final size:26
Alignment explanation
Indices: 17981506--17981557 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
17981496 CCAGTCCAAT
17981506 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17981532 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17981558 GCCTAAGTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17981986 original size:917 final size:896
Alignment explanation
Indices: 17980204--17982523 Score: 3216
Period size: 917 Copynumber: 2.6 Consensus size: 896
17980194 TCGGAACCCC
* * * * *
17980204 AAACATGGTAGACGTAATCCATGTATTTTTATTGGCATGTATAAAAAAATTCAGCTAAAAAATCA
1 AAACATGGTAGACGTGATCCTTGTATTTTTATTGGCATGCAAAAAAAAATTCAGCTAAAAACTCA
17980269 AAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
66 AAGTGTACAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
17980333 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAG
131 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAG
* *
17980398 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGTGCACACCCCTC
196 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGAACATCATGTGTGCACACCCCCC
* * *
17980463 -CGGGCCCTCTGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCAACGAT
261 TCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCC-ACGAT
* * * *
17980527 GGTGCCTCGATGAAGAAAAATACGACACCAGCACATGCTCGAGCCCAGCATGTGCTGTCTCAACC
325 GGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACC
* *
17980592 CTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGT
390 CTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * *
17980657 ATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGTTCAGCCGACCAGAGGGGCAGGATGCGCA
455 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG-CCAGAGGGGCAGGATGCACA
* * * * *
17980722 AGTTGGGGATCGATCAGGTCCCCCTCTGCGTGCTGTCGATCCTACTACCATAACCCTCAGTCTGA
519 AGTCGCGGATCGATCAGGTCCCCCTCTACGTGCTGTCAATCCTACTACCATAACCCTCAGTCAGA
* * *
17980787 TCCGATCTTAGACTGGGAATGAACTTCGTATGCGTAAGCCAACCGACAAAACGAACGGGCGGGCG
584 TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAACGGGCGGGCG
* ** * *
17980852 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTT
649 GGCACTACGCCGACCAGAGAGACAAGATGCGCAAGCCGTGGATCGATAGGCTGGTAGGTGGGTTT
* * *
17980917 AGGCACATCTTTATATTTCTGCGTGCCAATACTATTTTTATGGCTTGTAAATTCATACAATGGTC
714 AGGCACATCTTCATATTTCTACGTGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * **
17980982 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCATGATTTTTGAA
779 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCCAA
* * * *
17981047 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCGA
844 ACTTTTTACGATTCGAGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCA
* * **
17981100 AAACTTGGTGGACGTGATCCTTGTATTTTTGCTGGCATGCAAAAAAAAATTCAGC-AAAGAACTC
1 AAACATGGTAGACGTGATCCTTGTATTTTTATTGGCATGCAAAAAAAAATTCAGCTAAA-AACTC
*
17981164 GAAGTGTACAAGATTTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
65 AAAGTGTACAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
17981228 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
130 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGA
* * *
17981293 GGGATAGGGGGCCAATAAAAGGGCCAAGTACCCA-CACCAATCGTACATTATGTGCT-CACACCC
195 GGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAGCACCAATCGAACATCATGTG-TGCACACCC
* * *
17981356 TCCCTCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGA
258 -CCCTCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCC-A
* * * * *
17981421 CGTTGGTACCCCGACGAAGAAAAATAAGGCACTAGCACATGCCCGAGCCCAGCATGTGCTGTCGC
321 CGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGC
* *
17981486 AACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
386 AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* *
17981551 CCGTATGGCCTAAGTCAACACCCACGAAACGAGC-TGGTGGGCACTCAGCCAGCCAGAGAGGGCC
451 CCGTAT-GCCTAAGTC-A-ACCCACGAAACGAGCGT-GCGGGCGCTCAGCC-GCCAGAG-GGG-C
* * * * *
17981615 GGGATGCACAAGGTCCGACGGATCGATCGGGGT-CCGCTCTAAACGGTTCTGTCAAT-CTCGCTA
509 AGGATGCACAA-GT-CG-CGGATCGATC-AGGTCCCCCTCT--AC-GTGCTGTCAATCCT-ACTA
* * * * *
17981678 CCGTAACCCTCGGTCCAG-TCCAATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACTGA
566 CCATAACCCTCAGT-CAGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* ** *
17981742 CGAAACGGCCGGGCAAGTAGGTGGGCGGGCACTACGCCGACCAGAGAGACAAGATGCGCAAGCTG
630 CAAAACGAACGGGC--------GGGCGGGCACTACGCCGACCAGAGAGACAAGATGCGCAAGCCG
*
17981807 TGGATCGATAGGCTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
687 TGGATCGATAGGCTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATACCATTTT
* *
17981872 TATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACT
752 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
17981937 CGTTTTCTATTTTTCACGATTTTCCAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTCAGA
817 CGTTTTCTATTTTTCACGATTTTCCAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTCAGA
* *
17982002 AGGATTTTTGGCCCC
882 AGGAGTTTTGGCCCA
* * * * *
17982017 AAACGTGGTAGACATGATCCTTGTATTTTTTTTGGCGTGCACAAAAAAAATT-AGCTAAAAACTT
1 AAACATGGTAGACGTGATCCTTGTATTTTTATTGGCATGCA-AAAAAAAATTCAGCTAAAAACTC
* *
17982081 AAAGTGTACAAGATTTTT-TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTA
65 AAAGTGTACAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
17982145 TTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTAGAGGTTTGATGA
130 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGA
* *
17982210 GGGATAGGGGGCCAATATAAGGGCCAAGTAACAGCACCCAA-CGCACATCATGTGTGCACA-CCC
195 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCAATCGAACATCATGTGTGCACACCCC
* * * * *
17982273 CCTCGGCCCCCCCGATCATCTA-AACCTCAATGCCGCCGGTCAAGTTCTCCGACGATGCTCCAGC
259 CCTCGGCCCCCCCGATC-GCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCA-C
*
17982337 GATGGTGCCCCGACGAAGAAAAATACGACACCAGCACACGCCCGAGCCCAGCATGTGCTG-CTGC
322 GATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-GC
* * *
17982401 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGGACTCTGTATGCTTAGACTGGGAATGAACT
386 AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
17982466 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
451 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GCCAGAGGGG
17982524 GGGATGCGTA
Statistics
Matches: 1257, Mismatches: 126, Indels: 67
0.87 0.09 0.05
Matches are distributed among these distances:
895 3 0.00
896 214 0.17
897 21 0.02
898 176 0.14
899 9 0.01
900 2 0.00
901 30 0.02
902 4 0.00
903 10 0.01
904 2 0.00
905 1 0.00
906 15 0.01
907 3 0.00
908 3 0.00
909 75 0.06
910 2 0.00
911 3 0.00
912 34 0.03
913 2 0.00
914 11 0.01
915 175 0.14
916 16 0.01
917 428 0.34
918 18 0.01
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (896 bp):
AAACATGGTAGACGTGATCCTTGTATTTTTATTGGCATGCAAAAAAAAATTCAGCTAAAAACTCA
AAGTGTACAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGAACATCATGTGTGCACACCCCCC
TCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCACGATG
GTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCC
TCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGCCAGAGGGGCAGGATGCACAAG
TCGCGGATCGATCAGGTCCCCCTCTACGTGCTGTCAATCCTACTACCATAACCCTCAGTCAGATC
CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAACGGGCGGGCGGG
CACTACGCCGACCAGAGAGACAAGATGCGCAAGCCGTGGATCGATAGGCTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTACGTGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCCAAAC
TTTTTACGATTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCA
Found at i:17982457 original size:26 final size:26
Alignment explanation
Indices: 17982421--17982473 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17982411 CCGGTCCGAT
* *
17982421 CTTAGACTGGGAATGGACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17982447 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17982473 C
1 C
17982474 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17983860 original size:26 final size:26
Alignment explanation
Indices: 17983824--17983876 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17983814 CCGGTCCGAT
17983824 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17983850 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17983876 C
1 C
17983877 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17983977 original size:185 final size:185
Alignment explanation
Indices: 17983665--17984029 Score: 536
Period size: 185 Copynumber: 2.0 Consensus size: 185
17983655 CTGGTCCGAT
* * *
17983665 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * ** *
17983730 CGGCCAAAGGGGCGGGATGTGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGACCCCCTCTGCGTGCTGTCGATCC
** * *
17983795 TGCTGCCACAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
131 TGCTGCCACAACCCTCAGTCCGATCCGACCTTAGACTGGGAATGAACTCCATATG
17983850 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-AGAGCGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACA-AGCGTGCGGGCGCTCAG
* * *
17983914 CCGGCCAGAA-GGGCGGGATGCGCAAGCCGGGGATCGACCGTGACCCCTTCTGGGTGCTGTCGAT
65 CCGGCCA-AAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGACCCCCTCTGCGTGCTGTCGAT
* * *
17983978 CCTGCTGCCGCAACCCTCAGTCCGATCTGACCTTAGACTGGGAATGCACTCC
129 CCTGCTGCCACAACCCTCAGTCCGATCCGACCTTAGACTGGGAATGAACTCC
17984030 GTATACCTAA
Statistics
Matches: 160, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
184 1 0.01
185 157 0.98
186 2 0.01
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (185 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGACCCCCTCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCAGTCCGATCCGACCTTAGACTGGGAATGAACTCCATATG
Found at i:17987918 original size:873 final size:868
Alignment explanation
Indices: 17983850--17989198 Score: 5590
Period size: 873 Copynumber: 6.2 Consensus size: 868
17983840 ACTCCATATG
*
17983850 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
17983915 CGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGACCGTGACCCCTTCTGGGTGCTGTCGATCC
66 CGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCC-TCTGCGTGCTGCCGATCC
* * * * * * *
17983980 TGCTGCCGCAACCCTCAGTCCGATCTGACCTTAGACTGGGAATGCACTCCGTATACCTAAGCCAA
130 TACTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
* * * * *
17984045 TCGACAAAACGAGCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCG
195 CCGACGAAACGAGCGGGCGGGCGGGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
17984110 TGGATCGATAGGATGGTAGCTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* *
17984175 TATGGCTCGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACT
324 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
17984240 CGTTTTGTATTTTTCATGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTCGGA
389 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGA
* * *
17984305 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATGCCTCT-T-TTTTTTTTGGCATGCATAAAAAA
454 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT-CCT-TGTATTTTTGTTGGCATGCACAAAAAA
*
17984368 ATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
517 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * * *
17984432 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATTCTCTTTATGGGGGTGTGACTC
582 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
17984497 CTGGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
647 CTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * ** * * * *
17984562 TGTGCGCACACCCCTCGGCCCCCCCGAACGTTGGAACCCCATTACCGCCGGTAAGGTTGT-C--C
712 TGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATACCGCCGGTCAGGTTCTCCGGC
* * * ** *
17984624 GGT-----GATGGTGCCCCGACGAGGAAAAATACGGCACC-GACACATGCCTGATTCCAGCAAGT
777 GGTCCGACGATGGTACCCCGACGAAGAAAAATACGGCACCAG-CACATGCCCGAGCCCAGCATGT
* * *
17984683 GCTGCCACAACCCTCGGTCTGGTCCGAT
841 GCTGCCGCAACCCTCAGTCCGGTCCGAT
* * *
17984711 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
17984776 CGGCCAGAGGGGCGGGATGTGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGGTGCCGATCC
66 CGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGT-CCCCTCTGCGTGCTGCCGATCC
* ** * *
17984841 TGCTACAACAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
130 TACTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
* * * * * *
17984906 CCGATGAAACAAGCGGGTGGGC--G-GGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGTCGA
195 CCGACGAAACGAGCGGGCGGGCGGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG-
* *
17984968 T-GATCGATAGGGTGGTACGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* *
17985032 TATGGCTTGTAAATTCATATAATGGTCCCTTAAGCC-TCACGTGAAGTTCCATGGCAAGACGACT
324 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
17985096 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTTGCGG-TTCAGGATTTTTTAAAATTTTTTCG
389 CGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTTACGGTTTGA-GATTTTTTAAAATTTTTTCG
* * * *
17985160 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCTTGCAAAAAAAA
452 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * ** *
17985225 ATTCAGCTAAAAACTC-AGACTGTACAAGATTTTGTGACCATTCGAAAAAAGTACCCCCATTTTA
517 ATTCAGCTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* ** *
17985289 GACACTTTAGTAACTACTGGCAGCAAACCTGTAATATCTCAAATGCTCTTTAAGGGGG-GTGAGT
581 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
17985353 TCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATC
646 TCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * ** * ** * *
17985418 ATGTGCGCACACCCCCCTGGCCCCCTCGGTCATCGGAACCCCAATATTGTCGATCAGGTTCT---
711 ATGTGCGCACACCCCCC-GGCCCCCCCGATCGCCGAAACCCCAATACCGCCGGTCAGGTTCTCCG
** * ** ** ** *
17985480 TTGG--CGAC---GGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCTTGACCCCAGCATG
775 GCGGTCCGACGATGGTACCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* ** * *
17985540 TGCTGCCACAACCCTTGGTCTGGTCTGAT
840 TGCTGCCGCAACCCTCAGTCCGGTCCGAT
* * *
17985569 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCGGGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
17985634 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCC-GGTCCCCTCTGCGTGCTACCGATCCT
66 CGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCTCTGCGTGCTGCCGATCCT
* * * * * *
17985698 GCTACTGCAACCCATCGGT-TGGTCTG-TCTTAGAC-GGCG--T--A--GCGTATG-CT-AGCC-
131 ACTACCGCAACCC-TCAGTCCGGTCTGATCTTAGACTGG-GAATGAACTCCATATGCCTAAGCCA
* ** * * * * *
17985751 A-C-AGGTCACG-TCGAGTGGGC---CGGCACTATGCCGGCTA-AGATGACGGGAT-CGC-AGCC
194 ACCGACGAAACGAGCGGGCGGGCGGGCGGCACTACGCCGGCCAGAGA-GACGGGATGCGCAAGCC
* * *
17985807 GTTGCGATGCAGAAAGGAGTGGT-GGTGGGTTT-GG-ACATCTT-ATA-TTCTGCTTGTC-ATGC
258 G-TG-GAT-C-GATAGG-GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* * * *
17985866 CA-TTTTATGGCTTG--AATTC-TACAATGGT-CATTAAG-C-TCACGTGGA-TTTCATGGGACC
318 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA-A
* ** * * *
17985923 GA-GACTCGTTTGCTA--GCTCAAGATTTTT-AAACTTTTGA-GG-CT-AGA-TTTTT---ATTT
382 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTT
** * ** * **
17985977 CGTCAGAA-GAGTTTTGGCCAGAAAC----T-GACGTGAT-TTTGGGGTATTCGATGATTGGCA-
447 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT---GTATT-TTTG-TTGGCAT
** * *
17986034 GC-CAAAAAAATTGTGCT--AAA-TCGAAGTGTAGTGGCCAAGATTTTTGCGACTATTTG-AAAA
507 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA-----CAAGA-TTTTGTGACCATTTGAAAAA
** *
17986094 AG-GATCCCCA-TTCAGACACTTTAATGG-TACTGGCA--AGTCCTTGTAAAATCTCAAATGCGC
566 AGTG-TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC-TGTAAAATCTCAAATGCTC
*
17986154 TTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
629 TTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * * * *
17986219 AGCACCCATCGCACAACATGTGCGCACACCCCCCGG-ACCCCCGATTGTCGGAAGCCCAATACCG
694 AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATACCG
*
17986283 CCGGTCAGG-T-T----C--TCCGACGATGGTACCCCGATGAAGAAAAATACGGCACCAGCACAT
759 CCGGTCAGGTTCTCCGGCGGTCCGACGATGGTACCCCGACGAAGAAAAATACGGCACCAGCACAT
* *
17986340 GCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCAGTCCGATCTTAGACCAGGAATGAACTC
824 GCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-CA----G----T---CC-GG--T---C-C
17986405 TGTAT
866 -G-AT
* * * *
17986410 GCTTAGACTGGGAATGAACTCCGTTTACCTAAGTCAACTCACGGAACGAGCGTGCGGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
17986475 CCAGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCTACCTCTGCGTGCTGTCGATC
65 CCGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTC-CCCTCTGCGTGCTGCCGATC
* * * * *
17986540 CTACTGCCGCAACCCTC-GATCCGGTCTAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCT
129 CTACTACCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
* ** *
17986604 AACCGACAAAACGAGCGGGCGGGCGGGCGGGCGGGCAGGCACTACAACTGCCAGAGAGACGGGAT
193 AACCGACGAAACGA--------GCGGGCGGGCGGGC-GGCACTACGCCGGCCAGAGAGACGGGAT
* * * * * *
17986669 GCACAAGCCGTGGATCGATAGGGTGATTGGTGGGTTTACGCACATCTTTATATTTCTGCATGCCA
249 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
*
17986734 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCACTTAAGCCTTCACGTGAAGTTTCATGG
314 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
*
17986799 CAAGACGACCCG-TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAA
379 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAA
* * * ** * * *
17986863 TTTTTTTGAAAGGATTTTTCACCCCAAATTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGC
444 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
17986928 ACAAAAAAATTCAGATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCC
509 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
17986993 CATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCGCAAATGCTCTATAAGGGGG
574 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
17987058 TGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
639 TGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * *
17987123 GCACA-CATTGTGCGCACACCCCCCAGCCCCCCCAATTGCCGAAACCCTAATGCCGTCGGTCAGG
704 GCACATCA-TGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATACCGCCGGTCAGG
* *
17987187 TTCTCCGGCGATAGTCCGACGATGGTACCCCGACGAAGAAAATTATGGCACCAGCACATGCCCGA
768 TTCTCCGGCG---GTCCGACGATGGTACCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGA
* *
17987252 GCCCAGCATGTGCTGCCGCAACACTCAGTCCGTTCCGAT
830 GCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGAT
* ** ** * **
17987291 CTTAGACAGCAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAATGCAGGTACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * * *
17987356 CGACCGGAAGGGTGGGATGCACAAGTCGAGGATCGGTCGAGTCCCTCTCTGCGTGTTGCCAATCT
66 CGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCC-CTCTGCGTGCTGCCGATCC
* * * * *
17987421 TACTGCCGCAACCCTCATTCTGGTCTGATCTTAGATTGGGAATGAACTCCATACGCCTAAGCCAA
130 TACTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
* * *
17987486 CCGACGAAACGAGCGGGCGGGCGGGCATGCACTACACCGCCCAGAGAGACGGGATGCGCAAGCCG
195 CCGACGAAACGAGCGGGCGGGCGGGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
*
17987551 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* * * **
17987616 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACATGAAGTTTGATGGCAAGATAACT
324 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** * *
17987681 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTTGAGATTTTTTAATATTTTTTCGGA
389 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGA
* * * * ** * *
17987746 AGGGGTTTTGGCCCCAGACTTGTTAGACGTAATCCTTGTATACTTGTTGGTATGCACAAAAACAT
454 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
17987811 TCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAAAC
519 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
17987876 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
584 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
17987941 GGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCCCCCATCACACATCATG
649 GGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * * * *
17988006 TGCGCACACCCCCTGACTCCCCCGATCGCCGAAACCCCAATGCCGTCAGTCAGGTTCTCCGGTGA
714 TGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATACCGCCGGTCAGGTTCTCCGGCGG
*
17988071 TGCTCGAGCGATGGTACCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGT
779 T-C-CGA-CGATGGTACCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
* * *
17988136 ACTGTCGTAACCCACGGTCTGATCTGATCTTTGACTGAGAATGAACTCCGTAT
841 GCTGCCGCAA-CC-C--TC--A---G-TC-----C---G---G---TCCG-AT
* * * * *
17988189 GCTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCATGAAACGAGTGAGCGGGTGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
17988254 CCGGCCA-AAGGGGCGGGATGCGTAAGCCGAGGATCGACCGGGTCCCCCTCTACATGCTGCCGAT
65 CCGGCCAGAA-GGGCGGGATGCGCAAGCCGGGGATCGGCCGGGT-CCCCTCTGCGTGCTGCCGAT
* * * *
17988318 CCTACTACCACAACCCTCAGTCTGATCCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
128 CCTACTACCGCAACCCTCAGTCCGGT-CTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGC
*
17988382 CAACCGACGAAACGA----GCGGGC--G-GGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGC
192 CAACCGACGAAACGAGCGGGCGGGCGGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
17988440 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
257 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* *
17988505 TTTATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGA
322 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * ** * *
17988570 CCCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
387 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCG
** *
17988635 GAAGGAGTTTTGGTGCCAAACTTGGTAGACGTGATGCTTGTATTTTTGTTGGCATGCACAAAAAA
452 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
17988700 ATTCAGCT-AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
517 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
17988764 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTT
582 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
** *
17988829 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATTGCACATCA
647 CTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
17988893 TGTGTGCACTCTCCCCTTGGCCCCCCCGATCACC-AGAACCCCAATGCCGCCGGTCAGGTTCTCT
712 TGTGCGCACAC-CCCC-CGGCCCCCCCGATCGCCGA-AACCCCAATACCGCCGGTCAGGTTCTCC
* ** * * * * ** *
17988957 GGCCATGCTCCGGTGATGGTGCCCCGACGAAGAGAAATGCGGCACCAGCGCATGCTTGAGCCTAG
774 GG-C--GGTCCGACGATGGTACCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* ** * *
17989022 CATGTACTGCTTCATCCCTC-GAT-TGGTCCGAT
836 CATGTGCTGCCGCAACCCTCAG-TCCGGTCCGAT
* * * * *
17989054 CTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGTCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * * *
17989119 CAGCCAGAGGGGTAGGATGCGTAAGCCGAGGATCGGCCGGGTCCCCCTCTGTGTCCTGCCGATCC
66 CGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGT-CCCCTCTGCGTGCTGCCGATCC
* *
17989184 TACTGCTGCAACCCT
130 TACTACCGCAACCCT
17989199 TGCTCCCATC
Statistics
Matches: 3777, Mismatches: 508, Indels: 403
0.81 0.11 0.09
Matches are distributed among these distances:
813 4 0.00
814 1 0.00
815 10 0.00
816 95 0.03
817 32 0.01
818 110 0.03
819 16 0.00
820 22 0.01
821 27 0.01
822 8 0.00
825 6 0.00
826 2 0.00
827 1 0.00
828 3 0.00
829 5 0.00
830 4 0.00
831 10 0.00
832 1 0.00
833 22 0.01
834 11 0.00
835 7 0.00
836 8 0.00
837 5 0.00
838 1 0.00
839 12 0.00
840 7 0.00
841 15 0.00
842 103 0.03
843 45 0.01
844 41 0.01
845 23 0.01
846 8 0.00
847 5 0.00
848 2 0.00
849 6 0.00
851 7 0.00
852 2 0.00
853 4 0.00
854 2 0.00
855 11 0.00
856 102 0.03
857 325 0.09
858 281 0.07
859 2 0.00
861 182 0.05
862 4 0.00
864 121 0.03
865 10 0.00
866 8 0.00
867 14 0.00
868 3 0.00
869 30 0.01
870 11 0.00
871 15 0.00
872 177 0.05
873 415 0.11
874 3 0.00
875 6 0.00
876 9 0.00
877 7 0.00
878 1 0.00
879 17 0.00
880 182 0.05
881 15 0.00
882 11 0.00
883 5 0.00
884 2 0.00
885 3 0.00
886 5 0.00
887 3 0.00
888 1 0.00
889 41 0.01
890 184 0.05
891 396 0.10
892 22 0.01
893 30 0.01
894 115 0.03
895 48 0.01
896 13 0.00
897 6 0.00
898 4 0.00
899 166 0.04
900 5 0.00
901 3 0.00
902 1 0.00
904 1 0.00
905 1 0.00
906 67 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (868 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCTCTGCGTGCTGCCGATCCT
ACTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATACCGCCGGTCAGGTTCTCCGGCGGTC
CGACGATGGTACCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
CGCAACCCTCAGTCCGGTCCGAT
Found at i:17995337 original size:26 final size:26
Alignment explanation
Indices: 17995307--17995359 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17995297 GTTGACTTAG
17995307 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17995333 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17995359 G
1 G
17995360 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17996028 original size:4 final size:4
Alignment explanation
Indices: 17996019--17996043 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
17996009 CTGACGTAAT
17996019 GCCC GCCC GCCC GCCC GCCC GCCC G
1 GCCC GCCC GCCC GCCC GCCC GCCC G
17996044 GTCGCCCGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.72, G:0.28, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:17996269 original size:26 final size:26
Alignment explanation
Indices: 17996233--17996285 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17996223 GTTGACATAG
*
17996233 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17996259 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17996285 G
1 G
17996286 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17997178 original size:26 final size:26
Alignment explanation
Indices: 17997148--17997200 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17997138 GTTGACTTAG
*
17997148 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17997174 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17997200 G
1 G
17997201 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17997839 original size:904 final size:903
Alignment explanation
Indices: 17994537--18001579 Score: 5945
Period size: 904 Copynumber: 7.9 Consensus size: 903
17994527 GCATTGCCGG
* * * ** * *
17994537 AGCATCGTCGGAGAA-CTGACCGGCGGCATTGGGGTTCCGGTAATCGAGGGGGCCGGGGGAGGGT
1 AGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCAGCGATCGGGGGGGTC-GGGG-GGGT
* *
17994601 GTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
64 GTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
17994666 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCA
129 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
17994730 TTAAAGTGTCTAAAATGGGGGACACTTTTTTCAAATGGGTCACAAAATCTTGGACACTTCGAG-T
194 TTAAAGTGTCTGAAAT-GGGGACACTTTTTTCAAAT-GGTCACAAAATCTTGTACACTTCGAGTT
* * *
17994794 TTTAGCTGAACTTTGGTTTT-TGCATGCC-AACAAAATACAAGGATCACGAACTACCAAGTTTGG
257 TTTAGCTGAA-TTT--TTTTGTGCAAGCCAAAAAAAATACAAGGATCACG-TCTACCAAGTTTGG
* * *
17994857 GGCCAAAACTCCTT-TCGAAAAAATTTTAAAAAAAACCCAAACCGTAAAAAGTTTTCCAAAATCA
318 GGCCAAAACTCCTTCT-GAAAAAATTTT-AAAAAATCCCAAACCGCAAAAAG-TTTCAAAAATCA
17994921 TGAAAAATATGGAAAACGAGTCCATCTTGCCATG-AAC-TCACATGAAGGC-TAAGGGACCATTG
380 TGAAAAATA--GAAAACGAGT-CATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
* * * *
17994983 CTATTAATTTACAAAGTCATAAAAATGGCGATTGGCATGTAAAAAATAATGAAAATGTGGCCCTA
442 -TATGAATTTAC-AAGCCATAAAAATGGC-ATTGACATGT-AAAAAT-ATGAAGATGT-G-CCTA
* * * * *
17995048 AACCCACCTACCACCCT-TCGATCCACGGCTTGTGCATCCCGTCTCTCTAGCCGGCATAGTGCTC
500 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* *
17995112 GCCCGT----CCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAA
565 GCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
17995173 GATCAGACCGAAACTGAGTGTTGTGGCAGCAGGATCGACAGCACGTAGATGGGGACCCGACCGAT
630 GATCAGACC-AAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGATCGAT
* * * * * *
17995238 CCCCGGCTTGCGCATTCCACCCCTCTGGCCGACTGAGCACCCGTACGCTCATTTCATGGGTTGAC
694 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCAATTCATGGGTTGAC
17995303 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
759 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * *
17995368 AGACTGAGGGTTGCGGCAACACATGCTGAGTCGGGCATGTGCTGGTGTCGAATTTTTCTTCATCG
824 AGACCGAGGGTTACGGCAACACATGCTGGGTCGGGCATGTGCTGGTGTCGAATTTTTCTTCGTCG
*
17995433 GGGCACCATCGTCGT
889 GGGCACCATCGTCGC
* *
17995448 AGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCAGCGATCGGGGGGGTCCGAGGGGGGG
1 AGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCAGCGATCGGGGGGGT-C--GGGGGGG
* * *
17995513 TTTACGCACATGATGAGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATC
63 TGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
17995578 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
128 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
17995643 ATTAAAGTGTCTCAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
193 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
17995708 TTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAAAATTGTACACAAAGGATCATGTCTACCAAGTT
258 TTAGCTGAATTTTTTTGTGCAAGCC--AAAAAAAA---T--AC-AAGGATCACGTCTACCAAGTT
* *
17995773 TGGGGCCAAAACTCCTTCTGAAAAAATTTTAGAAAATCCCAAACCGCCAAAAGTTTCAAAAATCA
315 TGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCA
* * * *
17995838 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTAT
380 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
* * *
17995903 GAATTTAAAAGCCATAAAAATAGCATTGACATGCAAAAATATGAAGATGTGCCTAAACCCACCTA
445 GAATTTACAAGCCATAAAAATGGCATTGACATGTAAAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
17995968 CCACCCTATCGATCCATGGGTTGCGCATCTCGTCTCTCTGGCTGACGTAATGCCCGCCCGCCCGC
510 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT-A-----G--TGCCCGC
* *
17996033 CCGCCCGCCCGGTCGCCCGCTCGTTTCGTCGGTTGGCATAGGCATACGGAGTTCATTCCCAGTCT
567 CCGTCCG-CC---CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* ** * ** * * *
17996098 AAGATCGGACCGGACTGCA-CGTTGTAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCG
628 AAGATCAGACCAAACTG-AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGATCG
* * * *
17996162 ATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCCG-TGGAGTGCCCGCACGCTCAATTCGTGGGTT
692 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-GAGCGCCCGCACGCTCAATTCATGGGTT
* * *
17996226 GACATAGGCATGCGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCTGTCTAAGATCGG
756 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * *
17996291 ACC-GAACCGAGGGTTACAGCAGA-ACATGCTGGGCTCGGGCATGTGTTGGTG-CCACATTTTAC
821 ACCAG-ACCGAGGGTTACGGCA-ACACATGCTGGG-TCGGGCATGTGCTGGTGTCGA-ATTTTTC
* *
17996353 TTCGCCGGGGTACCATCGCCGGAGCATCGCC
882 TTCGTCGGGGCACCAT---C---G--TCG-C
* * * * * *
17996384 GAAGCATCATCGGAGAACCTGACCGACAGCATTGGGGTTTCGGCGATCGGGGGGAAT-GGGGGGG
1 --AGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCAGCGATCGGGGGG-GTCGGGGGGG
* * * *
17996448 TGTACGCATATGTTGTGTGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
63 TGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
17996513 AAACCTTGAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGTTGCCAGTAGCC
128 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
17996578 ATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
193 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * *
17996643 TTAGTTCAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCA
258 TTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* ** * * ** * *
17996708 AACCTCCTTCCAAAAAAATTTTAAAAAATCTCGAGTCGTAAAAAGTTTAAAAAATCATGAAAAAT
323 AAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
** * *
17996773 AGAAAACGAGTCATCTTGCCATGAAACTTCATGTAAAGGCTTAAAGGACCATTGTATGAATTTAC
388 AGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
* ** * *
17996838 AAGCCATAAAAATGGCATTGGCACATAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTA
453 AAGCCATAAAAATGGCATTGACATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* ** * *
17996903 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGTGTATTGCCCGCCCGTCCGCCCACCCGC
518 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCCGC
* * *
17996968 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAAACCGAGG
583 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGG
* * * * **
17997033 GTTGCGGTAGCAGGATCGGTAACACGCAGAAGGGGACCCGATCGATCCTCGGCTTATGCATCCCG
648 GTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG
* * **
17997098 CCCCTCTGGCCGGCTGCGCGCCCGCATGCTCGCTTCATGGGTTGACTTAGGCATACGGAGTTCAT
713 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCAATTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
17997163 TCCCAGTCTAAGCATACGGAGTTCATTTCCAATCTAAGATCAGACCAGACCAAGGGTTACGGCAA
778 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAA
*
17997228 CACATGCTGGGTCGGGCATGTGCTGGTGTCGAATTTTTCTTCGTCGAGGCACCATCGTCGC
843 CACATGCTGGGTCGGGCATGTGCTGGTGTCGAATTTTTCTTCGTCGGGGCACCATCGTCGC
* * * * **
17997289 AGCATCGTCAGAGAACCTGATTGACGGTAATGGGGTTCCAATGATCGGGGGGGTCGGGGGGGTGT
1 AGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCAGCGATCGGGGGGGTCGGGGGGGTGT
* *
17997354 GCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
66 ACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
17997419 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATT
131 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
17997484 AAAGTATCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
196 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
17997549 GCTGAATTTTTTTTGTTCAAGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAA
261 GCTGAA-TTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * *
17997614 ACTCCTTCTGAAAAAATTTTAGAAAATCCCGAACCACAAAAAGTTTCAAAAATGATGAAAAATAG
325 ACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
*
17997679 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
390 AAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
17997744 GCCATAAAAATTGCATTGACGA-GTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
455 GCCATAAAAATGGCATTGAC-ATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * * *
17997808 CGTTTCATGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCACCCGTCCGCCCGTCCGCT
519 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCCGCT
* * * *
17997873 CGGTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAAACCAGACTGAGGG
584 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGG
* * * * **
17997938 TTGCGGTAGCAGGATCGGTAGCACGC---A---G---C-A-GGATCCCCGCCTTGCGCATCTTGC
649 TTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC
* * ** ** * * ** *
17997992 CCCTCTGGCCGACTGTGCATCCGCACGCTCTTTTCGTGGGTTGAATTATTCATACAGAGTTCATT
714 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCAATTCATGGGTTGACTTAGGCATACGGAGTTCATT
* * * ** ** * **
17998057 CCTAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAAACTGGGCCTTGGGTTA---CAA-
779 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAAC
** * ** * * * * * *
17998118 GGAT--TGGGGC-ACCAT-CGCCGGAG-C--A-------TCGTCGGAGAACC-T-GACCGGC
844 ACATGCTGGGTCGGGCATGTGCTGGTGTCGAATTTTTCTTCGTCGGGGCACCATCG-TC-GC
* * ** *** * * * *
17998164 GGCAT--T-GGGGTTCC-GAC-GATCGGGGGGCCGGGGGGGTGTGCGCA-C-ATCATGTGAGAT-
1 AGCATCGTCGGAGAACCTGACTGA-C----GG-CATTGGGGT-T-C-CAGCGATC-GGGGGGGTC
* * * *** * * * * * ** ** *
17998221 -GGGTGCTGGTACTTGGCCCTTAT-AT-TG-G-CCCGT-CT-ATCCCTCG-TCAAACCTCGAGAA
56 GGGGGGGT-GTAC---GCAC--ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG-G--
* * * * * * * ** * **** * * *
17998278 CTCAC-A-CCCCCTTAAAAAGCATTTGAGATTTTACA-GGTTTGCTACCAGTAGCCA-TT-AAAG
112 CCCCCTATCCCTCAT-CAAA-C-CTCGAGAACTCACACCCCCT--TA-AAG-AG-CATTTGAGAT
* * *** ** * * *** ** ** * *
17998338 TGT-CTGAAATGGGGACACT--TTTTTCAAA-TGGTCACAAAATCTTGTACACTTCGAGTTTTTA
169 TTTACAGGTTTGCTGCCAGTAGCCATT-AAAGT-GTC-TGAAAT-GGGGACACTT----TTTTCA
** *** * * * * ***** * ** *** ** * *****
17998399 CCT-G--A-ATTTTTTTGTGCA-TACCA-ACAAAAACACAACGATCATGT-CTA-CCAAGTTTGG
226 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAA-AAAAA
*** * * ** * ** * ** * * * *
17998456 GGCCAA--AACTCGTTCTGAAAAAATTT----TAAAAAATCCCGAACAGCAAAAAGTTTCAAAAA
290 ATACAAGGATCACG-TCT-ACCAAGTTTGGGGCCAAAACT-CC-TTCTGAAAAAATTTTAAAAAA
** ***** * ** * *
17998515 T--C---GTG-AAAAA---T-AGAAAA-CGA-GTCGTCTTG-CCATGA--CA-CTT-CACGTGAA
351 TCCCAAACCGCAAAAAGTTTCA-AAAATC-ATGAAAAATAGAAAACGAGTCATCTTGC-CATGAA
* * * * *** * ** *** *
17998563 GGCTT---ATG--GGACCATTGTA-TGA--ATT-TA-CAAGCCATAA-AAATGGCATTGGCATGC
413 -ACTTCACATGAAGG--C-TT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT--
* * * * * * **** * * * * **
17998617 AGAAATATGAAGATGTGCCTAA-ACCCACCTACCACCCTATCAATCCACGGCTCGCGCATCC-C-
471 TGACATGTAAAAATATG---AAGATGTGCCTA-AACCC-ACCTA-CCAC-CCTATCG-ATCCACG
* * * ** * * *
17998679 G--T-CTC-T-CTGGCTGGCGTAGTGCC--C---G-C-------------CCGCCCGCTCATTTT
528 GCTTGCGCATCCCGTCTCTC-T-G-GCCGACGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTC
* * * * *
17998720 GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGAACCGAGGGTTGCGG
590 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGG
* * * * * * * * *
17998785 CAGTAGGATCGGCAACACACAGAGGGGGA-CCTAGCCGATCCTCGACTTGTGCATCCCGCCCCTC
655 CAGCAGGATCGGCAGCACGCAGAAGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * *
17998849 TGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTGGGCATACGAAGTTCATTCCCAG
719 TGGCCGGCTGAGCGCCCGCACGCTCAATTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
** *** * *
17998914 TCTAAGCATACGGAGTTCATTTTCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATG
784 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAACACATG
* *
17998979 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAG-
849 CTGGG-TCGGGCATGTGCTGGTGTCGAATTTTTCTTCGTCGGGGCACCATCGTC-GC
* * * * *
17999035 AGCATC-TCCGGAGAACCTAACCCG-CGGCATTGGGGTTCCAGCGATCGTGGGGGCCGAGGGGGT
1 AGCATCGT-CGGAGAACCTGA-CTGACGGCATTGGGGTTCCAGCGATCGGGGGGGTCGGGGGGGT
* *
17999098 GTGCGCACATGATGTGCGATGGGTGCTGTTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
64 GTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
17999163 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
129 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * *
17999228 TTAAAGTGTCTGAAATGAGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGACTTTT
194 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * * ** * *
17999293 TGGCTGAATTTTTTTATGCATGCCAACAAAAATACAAAAATCACTTCTACTAAGTTTGGGGCCAA
259 TAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* ** * * ** *
17999358 AAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATTGTGATAAATA
324 AACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* *
17999423 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
389 GAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
* ** *
17999488 AGCCATAAAAATGGCATTGGCACATAAAACTATGAAGATGTGCCTAAACCCACCTACCACCCTAT
454 AGCCATAAAAATGGCATTGACATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
17999553 TGATACACGGCTTGCGCATCCCGTCTCTCTGGCC-AGCGTAGTG-CC-CAC--CCGCCCGCCCGC
519 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGTCCGCCCGCCCGC
* * ** **
17999613 TCCTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCTGACTGAGG
583 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGG
** * * * * *
17999678 GTTATGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCTCGACTTGCGCATCCCA
648 GTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG
* * * * ** * *
17999743 CCCCTCTAGCCGGTTGAGCCCCCGTACGCTCGTTTCATGGGTTGACTTATGCATACAGAGTTCAT
713 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCAATTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
17999808 TTCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAG
778 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAA
* ** * * * *
17999873 CACATGCTGGGCTTGGGCATCAGCTGGTG-CCACATTTTTCTTCGTTGGGGCACCATCATCGG
843 CACATGCTGGG-TCGGGCATGTGCTGGTGTCGA-ATTTTTCTTCGTCGGGGCACCATCGTCGC
* * * * * *
17999935 AGCATCGTCAGAGAACC-GACCGATGGTATTGGGGTTCCAACGATCGGGGGGGCCGGGTGGGGGT
1 AGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCAGCGATCGGGGGGGTC-GG-GGGGG-
* *
17999999 TGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
63 TGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
18000064 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
128 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
18000129 ATTAAAGTGTCTGAAATGAGGACA-TGTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTT
193 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * * **
18000193 TTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATGACATCTACCAAGTTTGATGCCA
258 TTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* ** ** * * *
18000258 AAAATTATTCCAAAAAAATTTTTAAAAATCCTC-AACCGCAAAAAGTTTAAAAAATCGTGAAAAA
323 AAACTCCTTCTGAAAAAATTTTAAAAAATCC-CAAACCGCAAAAAGTTTCAAAAATCATGAAAAA
* *
18000322 TAGAAAACGAGTCATCTTGCCATGAAACTTCATC-TGAACGCTTATGGGACCATTGTATGAATTT
387 TAGAAAACGAGTCATCTTGCCATGAAACTTCA-CATGAAGGCTTAAGGGACCATTGTATGAATTT
* ** * * *
18000386 ACAAGCTATAAAAATGGCATTGGTATGCAGAAATACGAAGATGTGCCTAAACCCACCTACCACCC
451 ACAAGCCATAAAAATGGCATTGACATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
** * * * *
18000451 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTTGGCGTAGTTCCCACCCGCCCGCCCGTCC
516 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCG-CC
* * * ** * **
18000516 CACTCGTTT-GTCGATTGGCTTAGGAATACGGAGTTCATT-CCAGTCTAAGATTGGACCGAACCA
580 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTG
* * * * * *
18000579 ATGGTTGCGGTAGTAGGATCGGCAGTATGCA-AA-GGG----G---GA--CCCGAC---CG-AT-
645 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGATCGATCCCCGGCTTGCGCATC
* ** *
18000628 -----CC-CT----GG--GA-----TGCACGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTT
710 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCAATTCATGGGTTGACTTAGGCATACGGAGTT
* * * *
18000676 CATTCCCAGACTAAGCATACGGAGTTCGTTCCTAGTCTAAGATCGGACCGGACCGAGGGTTACGG
775 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGG
* * * * * * *
18000741 CAGCAAATGCTGGGCTTGGGCATGTGCTGGTG-CTGCATTTTTCTTCGTCGGGGCACTATTGCCA
840 CAACACATGCTGGG-TCGGGCATGTGCTGGTGTC-GAATTTTTCTTCGTCGGGGCACCATCGTC-
18000805 G-
902 GC
* * * * * * * *
18000806 AGCATCGCCGAAGAACCTGACCGGCGGCATTGGAGTTCC-GACGATCGGGGGGGCCGAGGGGTTG
1 AGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCAG-CGATCGGGGGGGTCGGGGGGGTG
* **
18000870 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTTCTCATCAA
65 TACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
18000935 ACCTCAAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
130 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
18001000 TAAAGTGTCTGAAATGGGGATACTTTCTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTT
195 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* ** * *
18001065 AGCTGAATTTTTTTGTGCATGCCACCAAAAATGCAAGGATCACGTCTACCAAGTTTAGGGCCAAA
260 AGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
** * **
18001130 ACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAG
325 ACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
* * * *
18001195 AAAACGAGTCGTCTTGCCCTGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAA
390 AAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *** * *
18001260 GCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATC
455 GCCATAAAAATGGCATTGACATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * * *
18001325 GATCCATGACTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCACCCGCCCGTCCGCCCGCTC
520 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCCGCTC
* * ** **
18001390 ATTTCGTCGGTT-GCTTTAGGCATACGGAGTTCATTCCCAGTCTAAGGTCAGACCGGACCAAGGG
585 GTTTCGTCGGTTGGC-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGG
* * * ** * * * *
18001454 TTGCGGTAGCAGGATCGACAGCACACAGTGGGGGACCCGA-CTGATCCCCGACTTTCGTATCCCA
649 TTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCG
* * * *
18001518 CCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTT
713 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCAATTCATGGGTTGACTTAGGCATACGGAGTT
18001580 AAAGTGTCTG
Statistics
Matches: 4916, Mismatches: 908, Indels: 623
0.76 0.14 0.10
Matches are distributed among these distances:
841 83 0.02
847 1 0.00
849 1 0.00
850 1 0.00
852 118 0.02
855 11 0.00
856 8 0.00
857 17 0.00
858 10 0.00
859 13 0.00
860 18 0.00
861 23 0.00
862 11 0.00
863 6 0.00
864 13 0.00
865 26 0.01
866 27 0.01
867 24 0.00
868 24 0.00
869 184 0.04
870 384 0.08
871 232 0.05
872 47 0.01
873 12 0.00
874 9 0.00
875 45 0.01
876 35 0.01
877 25 0.01
878 21 0.00
879 26 0.01
880 28 0.01
881 28 0.01
882 20 0.00
883 13 0.00
884 14 0.00
885 28 0.01
886 16 0.00
887 11 0.00
888 18 0.00
889 9 0.00
890 15 0.00
892 2 0.00
893 124 0.03
894 1 0.00
895 3 0.00
897 2 0.00
898 5 0.00
899 32 0.01
900 295 0.06
901 313 0.06
902 160 0.03
903 241 0.05
904 441 0.09
905 38 0.01
906 12 0.00
908 1 0.00
910 25 0.01
911 55 0.01
912 70 0.01
913 155 0.03
914 90 0.02
915 264 0.05
916 22 0.00
917 34 0.01
918 21 0.00
919 60 0.01
920 10 0.00
924 1 0.00
925 2 0.00
926 183 0.04
927 326 0.07
928 2 0.00
930 2 0.00
933 9 0.00
935 214 0.04
938 45 0.01
939 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
AGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCAGCGATCGGGGGGGTCGGGGGGGTGT
ACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
GCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
CTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGA
AAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
CCATAAAAATGGCATTGACATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCCGCTCG
TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTT
GCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
CTCTGGCCGGCTGAGCGCCCGCACGCTCAATTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAACAC
ATGCTGGGTCGGGCATGTGCTGGTGTCGAATTTTTCTTCGTCGGGGCACCATCGTCGC
Found at i:17998078 original size:26 final size:26
Alignment explanation
Indices: 17998042--17998093 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
17998032 TTGAATTATT
17998042 CATACAGAGTTCATTCCTAGTCTAAG
1 CATACAGAGTTCATTCCTAGTCTAAG
17998068 CATACAGAGTTCATTCCTAGTCTAAG
1 CATACAGAGTTCATTCCTAGTCTAAG
17998094 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCCTAGTCTAAG
Found at i:17998930 original size:26 final size:26
Alignment explanation
Indices: 17998893--17998945 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17998883 GTTGACTTGG
17998893 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* **
17998919 GCATACGGAGTTCATTTTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17998945 G
1 G
17998946 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17999400 original size:896 final size:895
Alignment explanation
Indices: 17998123--18001579 Score: 4645
Period size: 896 Copynumber: 3.9 Consensus size: 895
17998113 TACAAGGATT
* *
17998123 GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GG
1 GGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCCGCGGCATTGGGGTTCCGACGATCGGG
* * *
17998187 GGGGCCGGGGGGGTGTGCGCACATCATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
66 GGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
17998252 GTCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTT
131 -CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
17998317 TGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
195 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * * *
17998382 TACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATACCAACAAAAACACAACGATCA-TGTCTA
260 TACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACT-TCTA
* * ** *
17998446 CCAAGTTTGGGGCCAAAACTCGTTCTGAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCA
324 CCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
* *
17998511 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGACACTTCACGTGAAGGCTTATGGGACC
389 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
17998576 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
454 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * *
17998641 CCACCTACCACCCTATCAATCCACGGCTCGCGCATCCCGTCTCTCTGGCTGGCGTAGTG-CCCGC
519 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGC
* * * *
17998705 CCGCCCGCTCATTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGACCG
584 CCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * * *
17998770 AACCGAGGGTTGCGGCAGTAGGATCGGCAACACACAGAGGGGGA-CCTAGCCGATCCTCGACTTG
649 AACCAAGGGTTGCGGTAGCAGGATCGGCAGCACACAGAGGGGGACCCGA-CCGATCCTCGACTT-
* * *
17998834 TGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTGGGCATAC
712 TGCATCCCACCCCTCTGGCCGGCTGAGC-CCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC
* **
17998899 GAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTTCAGTCTAAGATCGGATTGGACCGAGGG
776 GAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCGAGGG
*
17998964 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
841 TTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* *
17999019 GGGGCACCATCGTCAGAGCATC-TCCGGAGAACCTAACCCGCGGCATTGGGGTTCC-AGCGATCG
1 GGGGCACCATCGCCAGAGCATCGT-CGGAGAACCTGACCCGCGGCATTGGGGTTCCGA-CGATCG
* *
17999082 TGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGTTACTTGGCCCTTATATTGGC
64 GGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
17999147 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
129 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
17999212 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACATTTTTTTCAAATGGTCACAAAATCTT
194 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * **
17999277 GTACACTTAGACTTTTTGGCTGAATTTTTTTATGCATGCCAACAAAAATACAAAAATCACTTCTA
259 GTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACTTCTA
* *
17999342 CTAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCA
324 CCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
* *
17999407 AAAATTGTGATAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
389 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
17999472 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CATAAAACTATGAAGATGTGCCTAA
454 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-GAAA-TATGAAGATGTGCCTAA
* * *
17999535 ACCCACCTACCACCCTATTGATACACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCA
517 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-
* *
17999600 CCCGCCCGCCCGCTCCTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG
579 CCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
** ** * *
17999665 GACCTG-ACTGAGGGTTATGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCTCG
644 GACC-GAACCAAGGGTTGCGGTAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCTCG
* * * * * *
17999729 ACTTGCGCATCCCACCCCTCTAGCCGGTTGAGCCCCCGTACGCTCGTTTCATGGGTTGACTTATG
708 ACTT-TGCATCCCACCCCTCTGGCCGGCTGAG-CCCCGCACGCTCATTTCATGGGTTGACTTAGG
* * *
17999794 CATAC-AGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGAC
771 CATACGA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGAC
** * *
17999858 CGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATCAGCTGGTGCCACATTTTTCTTCGTT
835 CGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
** * * * * *
17999919 GGGGCACCATCATCGGAGCATCGTCAGAGAACC-GA-CCGATGGTATTGGGGTTCCAACGATCGG
1 GGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCCG-CGGCATTGGGGTTCCGACGATCGG
* *
17999982 GGGGGCCGGGTGGGGGTTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTG
65 GGGGGCC--GAGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
18000047 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
127 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
18000112 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACA-TGTTTTCAAATGGTCACAAAATC
192 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATC
* * *
18000176 TTATACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATGACATC
257 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACTTC
** ** *
18000241 TACCAAGTTTGATGCCAAAAATTATTCCAAAAAAATTTTTAAAAATCCTC-AACCGCAAAAAGTT
322 TACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCC-CGAACCGCAAAAAGTT
* * * *
18000305 TAAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATC-TGAACGCTTATGG
386 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA-CGTGAAGGCTTAAGG
* * *
18000369 GACCATTGTATGAATTTACAAGCTATAAAAATGGCATTGGTATGCAGAAATACGAAGATGTGCCT
450 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
** *
18000434 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTTGGCGTAGTTCC
515 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG-T-G
* * *
18000499 CACCCGCCCGCCCGTCCCACTCGTTTGTCGATTGGCTTAGGAATACGGAGTTCATT-CCAGTCTA
578 C-CCCGCCCGCCCG-CTCA-T--TTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * ** *
18000563 AGATTGGACCGAACCAATGGTTGCGGTAGTAGGATCGGCAGTATGCAAAGGGGGA--C--CCGA-
638 AGATCGGACCGAACCAAGGGTTGCGGTAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGAT
* * *
18000623 ---C--C---G-AT------CC-CT----GG--GA----TGCACGCTCGTTTCATGGGTTCACTT
703 CCTCGACTTTGCATCCCACCCCTCTGGCCGGCTGAGCCCCGCACGCTCATTTCATGGGTTGACTT
* * *
18000662 AGGCATACGGAGTTCATTCCCAGACTAAGCATACGGAGTTC-GTTCCTAGTCTAAGATCGGACCG
768 AGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCC-AGTCTAAGATCGGACCG
* * *
18000726 GACCGAGGGTTACGGCAGCAAATGCTGGGCTTGGGCATGTGCTGGTGCTGCATTTTTCTTCGTC
832 GACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * * *
18000790 GGGGCACTATTGCCAGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGAGTTCCGACGATCGGG
1 GGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCCGCGGCATTGGGGTTCCGACGATCGGG
*
18000855 GGGGCCGAGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
66 GGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
** * *
18000920 CCTATTTCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTT
131 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * *
18000985 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTCTTCAAATGGCCACAAAATCTTGT
196 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
18001050 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCACCAAAAATGCAAGGATCACGTCTACC
261 ACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACTTCTACC
* * ** * * **
18001115 AAGTTTAGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAA
326 AAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
* * *
18001180 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCCTGAAACTTCACGTGAAGGTTTAAGGGACCAT
391 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
**
18001245 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCC
456 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * * *
18001310 ACCTAGCACCCTATCGATCCATGACTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCACCCG
521 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CCCG
* *
18001375 CCCGTCCGCCCGCTCATTTCGTCGGTT-GCTTTAGGCATACGGAGTTCATTCCCAGTCTAAGGTC
583 --C--CCGCCCGCTCATTTCGTCGATTGGC-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
18001439 AGACCGGACCAAGGGTTGCGGTAGCAGGATCGACAGCACACAGTGGGGGACCCGACTGATCCCCG
643 GGACCGAACCAAGGGTTGCGGTAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCTCG
* *
18001504 ACTTTCGTATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGG
708 ACTTT-GCATCCCACCCCTCTGGCCGGCTGAGC-CCCGCACGCTCATTTCATGGGTTGACTTAGG
18001569 CATACGAAGTT
771 CATACGAAGTT
18001580 AAAGTGTCTG
Statistics
Matches: 2248, Mismatches: 234, Indels: 150
0.85 0.09 0.06
Matches are distributed among these distances:
869 151 0.07
870 340 0.15
871 208 0.09
872 31 0.01
873 6 0.00
874 7 0.00
875 3 0.00
876 2 0.00
878 2 0.00
879 1 0.00
881 1 0.00
882 2 0.00
883 2 0.00
885 1 0.00
886 2 0.00
889 2 0.00
890 1 0.00
892 2 0.00
893 2 0.00
894 3 0.00
895 5 0.00
896 461 0.21
897 65 0.03
898 3 0.00
899 30 0.01
900 306 0.14
901 326 0.15
902 161 0.07
903 4 0.00
904 87 0.04
905 31 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
GGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCCGCGGCATTGGGGTTCCGACGATCGGG
GGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACTTCTACC
AAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCC
GCCCGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAA
CCAAGGGTTGCGGTAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCTCGACTTTGCA
TCCCACCCCTCTGGCCGGCTGAGCCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGT
TCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG
GCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
Found at i:17999823 original size:26 final size:26
Alignment explanation
Indices: 17999793--17999845 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17999783 GTTGACTTAT
* *
17999793 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
17999819 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
17999845 G
1 G
17999846 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:18000694 original size:26 final size:26
Alignment explanation
Indices: 18000664--18000716 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18000654 GTTCACTTAG
18000664 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
* * *
18000690 GCATACGGAGTTCGTTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
18000716 G
1 G
18000717 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:18003091 original size:26 final size:26
Alignment explanation
Indices: 18003055--18003107 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18003045 GTTGACTTAG
18003055 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
18003081 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18003107 G
1 G
18003108 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18005155 original size:874 final size:870
Alignment explanation
Indices: 18003933--18010123 Score: 7104
Period size: 858 Copynumber: 7.0 Consensus size: 870
18003923 CCCAGTCTAA
* * * * * * *
18003933 GCATATGGAGTTCATTCCCATTCTAAGATTGGACGGGATCGAGGGATGCGGCAGGACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
* * ** *
18003998 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCAAGGCACCA-CACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCGGAGA
* *** * ** *
18004062 GCCTGACTAACGGCATT-AGGGTTCCGACGATCGGGGGTTTCGAGGGGGTGCATGCG--CATGAT
131 ACCTGACCGGCGGCATTGA-GGTTTCGACGATCGGGGG-GCCGGGGGGGTG--TGCGCACATGAT
* *
18004124 GTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCGAAA-TTCGAGAAC
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAAC
* *
18004188 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTG
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * * *
18004253 TAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAAGTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * *
18004318 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCCACCAAGTTTTGGGCCATAACTCGTTCCAA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * * *
18004383 AAAAATTTAAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCA
451 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
18004448 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAACTTACAAGCCAAAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
18004513 GGCATTGGCACACAAAAATATAAAGATGTCCCTAAACCCACCTACCACCCTATCAATCCACGGCT
581 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
18004578 TGCGCATCTCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGC
646 TGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* ** **
18004643 TTACGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGAGT-GAGGGTTGCGGTAGCAGGAT
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTTGCGACAGCAGGAT
** * * * * *
18004707 CGGTAGCACGCAGAGGCGGA-CTGGCCGATCCCCTGCTTTCGCATCCAGCCCCTCTGGCCAGCTG
775 CGACAGCACGCAGAGG-GGACCCGACCGATCCCCGGCTTGCG-ATCC-GCCCCTCTGGCCGGCTG
18004771 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
837 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
18004805 GCATACGGAGTTCATTCCTAGACTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
* * * * * * *
18004870 CTCAGGCATGTGCTGGTGCCACATTTTTTTTCACCGGGGCACCATCGTCGAAACATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCGGAGA
* * * *
18004935 ACCTAACCGGCGGCATTGAGG-TTCTGACGATCGGGAGGGCCGGGGGTGGCGTGTGAACATGATG
131 ACCTGACCGGCGGCATTGAGGTTTC-GACGATCGGG-GGGCCGGGGG-GGTGTGCGCACATGATG
*
18004999 TTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
18005064 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAATGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
18005129 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTGTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
18005194 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * * *
18005259 AAATTTTAAAAAATCTCGAACCG-TAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGGGCCGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
18005323 TTGCCATGAAACTTCACGTGAATGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
18005388 CATTGGCATGCACAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
18005453 CGTATCCCGTCTCTTTTGCCGGCGTAGTGCCC-CCCTGCCTGCCCGCTCGTTTCGTCGGTTGGCT
648 CGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCC-GCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * *
18005517 TAGGCATACGAAGTTCATTCCCAGTCGAAGATCAGACCAGATGGAGGGTTGCGACAGCAGAATCG
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCG
** * *
18005582 ACAGCACGTGGAGGGGGACCCGATCGGTCCCCGGCTTGCTCGA-CCTGCCCCTCTGGCCGGCTGA
777 ACAGCACGCAGA-GGGGACCCGACCGATCCCCGGCTTG--CGATCC-GCCCCTCTGGCCGGCTGA
18005646 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
838 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
18005679 GCATACGGAGTTAATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
* * *
18005744 CTTGGGCATGTGCTGGTGCCTCATTTTTCTTCGTC-GGGCACCAT--T----G--T---CGGAG-
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCGGAGA
* * * *
18005796 -CATCACCGGCGGCATTG-GCGTTTCGATGATCGGGGGCGCC-AGGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGAG-GTTTCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGT
* *
18005858 GCGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTAT-CCTCCATCAAACATCGAGAACTC
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT-CATCAAACCTCGAGAACTC
* * * *
18005922 ACAGCCCTTTAACGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
18005987 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * ** ** **
18006052 TGTGCCTGCCAACAAAAATACAAGAATCACATCTACCAAGTTTAAGGCCAAAACTATTTTTGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * * *
18006117 AAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
18006182 TTGCCATGAACCTTGACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
18006247 CATTGGCACACAGAAATATAAAGATGTCCCTAAACCCACCTACCACCTTATCGATCCACGGCTTA
583 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
18006312 CGCATCCCGTCTCTCTGGCCAGCGTAAT----GCTCACCCGCTCGCTCTTTTCATCGGTTGGCTT
648 CGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * ** ** *
18006373 AGGCATTCGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTATGGTAGTAGGATCGA
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGA
* * *
18006438 CAGCACGCAGAGAGGGACCCGGCCTATCCCCGGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGC
778 CAGCACGCAGAG-GGGACCCGACCGATCCCCGGCTTGCG-AT-CCGCCCCTCTGGCCGGCTGAGC
* * * * *
18006503 GACCGTACGCTCGTTTCCTGTGCTGACTTAG
840 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * ** *
18006534 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCACCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
* * * * *
18006599 CTCGAGCATGTGCTGGTGTCGTATTTTTCTTCGCTGGGGCA-C--CATC---G--T---CAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCGGAGA
** ** * ** * *
18006653 ACCTGACCAACGGCATTTTGGTTCCGACGATCGAGGGGGCC-GGGGGGTGTATGCACATGATATA
131 ACCTGACCGGCGGCATTGAGGTTTCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTG
18006717 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
18006782 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* **
18006847 TGGGACACTTTTTTCAAATGGTCACAAAATCTTCAACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
18006912 TGCAAGCCAAAAAAAATACAAGGACCAGGTCTAACAAGTTTGGGGCCAAAACTACTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** *
18006977 ATTTTAAAAAATCCCGAACAACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
18007042 GCCATGAAACTTCATGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** * * * * *
18007107 TTGGCATGTAGAAATATGAAGATGT-CTCTAAACCAACATACCACCCAATCTATCCACGGCTTGT
585 TTGGCACACAGAAATATGAAGATGTGC-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
18007171 GCATCCCGTCTCTCTAGCCAGAGTAGTGCCTGCCCGCCCGCCCACTCGTTTCGTCAGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
18007236 GGCACACAGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CTGAGGGTTGCAACAGCAAGATCGG
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGACAGCAGGATCGA
* * * * ** *
18007300 TAGCACGCAGAGCGAGACTCGACCGATACCAAGCTTGCGATCTCGCCCCTCTGGCCGGCT-AGCA
778 CAGCACGCAGAG-GGGACCCGACCGATCCCCGGCTTGCGATC-CGCCCCTCTGGCCGGCTGAGCG
* *
18007364 CCCGCACGTTCATTTCGTGGGTTGACTTAG
841 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * **
18007394 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTAGCGGCAGCACATGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
* * ** * *
18007459 CTCGGGCATGTGCTAGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCGGAGA
* **
18007524 ACCTGACCGGTGGCATTCG-GGTTTCGGTGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATT-GAGGTTTCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * * *
18007587 CGGTGAGTGCTGGTATTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
** *
18007652 ACCCCCTTAAAGAGCATTTGAGATTTTGTAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
18007717 AGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * ** *
18007782 TGCATGCCAACAAAAATACAAAGATCACATCCACTAAGTTTGATGCCAAAGCTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
18007847 ATTTTACAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
18007912 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
18007977 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGGTTGCG
585 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
18008042 CATCCCGTCTCTCTGGTCGGCTTAGTGCCCGCCCGCCCGCCCGCTCCTCGTTTCGTCAGTTGGCT
650 CATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCG---CTCGTTTCGTCGGTTGGCT
* * *
18008107 TAGGCACACGGAGTTCATTCCCAGTCTAAGATCGGACTGGA-CTGAGGGTTGC-AGCAGCAGGAT
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGA-CAGCAGGAT
* ** * * * * * *
18008170 CGACAGCACACAGTAGTAGACCCGATCGATCCCCGACTTGCGTATCCCACCCCTTTGGCCGGTTA
775 CGACAGCACGCAG-AGGGGACCCGACCGATCCCCGGCTTGCG-AT-CCGCCCCTCTGGCCGGCTG
* ** * *
18008235 AGCACCCATACGCTCATTTCGTGGGTTGACTTAA
837 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * **
18008269 GCGTACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT-
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---CC-G---GA-CCGA-GG-GTTG
** * *
18008333 CATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCAAATGCTGGGCTGGGGCATGTG
49 C---GGCAG-C----A-C--A-T-G--CTA-GGCT-CGG--GC--ATG-T--GCT---G------
* * * *
18008398 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCAGAGAACCTGACCGGCG
81 ---GTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCG
* * * ** * *
18008463 GCATT-AGGGTTTCAACGATCGGGGGTGTCGGGGGTGTGTGCGCACATGATGTGAAACGGGTACT
143 GCATTGA-GGTTTCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
18008527 GATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAAGTCACACCCCCTTAGA
206 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA-A
* ** *
18008592 GAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCAAAAATGGGGACATT
270 -AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
18008657 TTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
334 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* ** * * * * *
18008722 ACAAAAATACAAGGATCACGTCTACGAAGCGTAGTGTCAAAACTGCTTTCGAAAAAATTTTAAAA
399 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * * *
18008787 AATCCTGAACCGTAAAAAGTTTTGAAAATCATGGAAAATAGAAAACGAGTCGTCTTGCCCTGAAA
464 AATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
** *
18008852 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGATATAAAAATGGCATTGGCACGC
529 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
* * *
18008917 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCAAGGCTTGCACATCCCGTC
594 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
** * *
18008982 TCTCTGGCGGGCG-ACGTGCCCGCCCGCCCTCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGG
659 TCTCTGGCCAGCGTA-GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * *
18009046 AGTTCATTCCCAGTCTAAGATCAGACTGGATCAAGGGTTACGACAACAAGATC-AGCAGCATGCA
723 AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGA-CAGCACGCA
* * * * * *
18009110 GAGAGGGACCCGACCGATCCACGGCTTGCTCATCTCGCCCCTCTGGCAGACTGTGCGCCTGCACG
787 GAG-GGGACCCGACCGATCCCCGGCTTGC-GATC-CGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* *
18009175 CTCGTTCCATGGGTTGACTTAG
849 CTCGTTTCGTGGGTTGACTTAG
*
18009197 GCATACGGAGTTCATTCCAAGTCTAAACATATGGAGTTCATTCACGGTCTAAGATCGAACTGGAC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T--C-G-----GA-C---C-GGAC
* * * * *
18009262 TGAGGGTTACGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGCCAGGG
40 CGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
* * * * ** *
18009327 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGTGGTTTCGGGGATCGGTGGGC
105 CACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTTCGACGATCGGGGGGC
* *
18009392 C-GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTAT
170 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
18009456 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
235 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
18009521 CAGTAGCCATTGAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
300 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
18009586 TCGAGTTTTTAGCTGAAATTTTTTATGCATGCCAA-AAAAATTACAAGGATCACGTCTACC-AGT
365 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGT
* **
18009649 TTGGGGCCAAAACTCCTT-CTAAGAAAATTTTAAAAAAT-TTGAACCGCAAAAAGTTTCGAAAAT
429 TTGGGGCCAAAACTCCTTCCGAA-AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAAT
*
18009712 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
493 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * * *
18009777 CTGAACTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCTAAAGCCACC
558 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
* **
18009842 TACCACCCTATCGATCCATGGCTTGCGCATCTTGTCTCTCTGGCC-GACGTAGTGCCCGCCCGCC
623 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAG-CGTAGTGCCCGCCCG--
* *
18009906 CTCTCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
685 C-C-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * ** *
18009971 CCAGATCGAGGGTTGTGACAGTAGAATCGACAGCACGTGGAGGGGGACCCGACCGGTCCCCGGCT
748 CCGGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGA-GGGGACCCGACCGATCCCCGGCT
* * * *
18010036 TGCTTGATCTGCCCCTCTGGTCGGCTGAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAG
812 TGC--GATCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
18010097 GCATACGGAGTTAATTCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
18010124 CTTACGGAGT
Statistics
Matches: 4532, Mismatches: 627, Indels: 301
0.83 0.11 0.06
Matches are distributed among these distances:
853 2 0.00
854 2 0.00
855 239 0.05
856 15 0.00
857 4 0.00
858 735 0.16
859 189 0.04
860 148 0.03
861 23 0.01
862 109 0.02
863 3 0.00
865 1 0.00
866 1 0.00
868 1 0.00
870 470 0.10
871 32 0.01
872 105 0.02
873 430 0.09
874 442 0.10
875 56 0.01
876 4 0.00
877 1 0.00
879 1 0.00
882 1 0.00
885 2 0.00
886 1 0.00
889 1 0.00
890 2 0.00
891 5 0.00
892 2 0.00
894 5 0.00
895 3 0.00
896 197 0.04
897 36 0.01
898 142 0.03
899 3 0.00
900 256 0.06
901 8 0.00
902 74 0.02
903 1 0.00
904 1 0.00
906 1 0.00
907 3 0.00
908 3 0.00
910 2 0.00
911 1 0.00
912 3 0.00
913 1 0.00
914 3 0.00
915 3 0.00
916 1 0.00
917 3 0.00
919 2 0.00
921 3 0.00
922 3 0.00
923 2 0.00
925 1 0.00
926 1 0.00
927 81 0.02
928 158 0.03
929 87 0.02
930 4 0.00
931 382 0.08
933 1 0.00
934 3 0.00
935 3 0.00
937 5 0.00
938 3 0.00
939 4 0.00
940 3 0.00
941 4 0.00
942 1 0.00
943 2 0.00
945 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (870 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGAGGTTTCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGACAG
CACGCAGAGGGGACCCGACCGATCCCCGGCTTGCGATCCGCCCCTCTGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAG
Found at i:18008295 original size:26 final size:26
Alignment explanation
Indices: 18008266--18008347 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
18008256 TGGGTTGACT
* *
18008266 TAAGCGTACGAAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
18008292 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
18008318 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
18008344 TAAG
1 TAAG
18008348 ATCGGACTGG
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:18010129 original size:26 final size:26
Alignment explanation
Indices: 18010100--18010149 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18010090 GACTTAGGCA
18010100 TACGGAGTTAATTCCCAGTCTAAGCT
1 TACGGAGTTAATTCCCAGTCTAAGCT
* *
18010126 TACGGAGTTCATTCCCCGTCTAAG
1 TACGGAGTTAATTCCCAGTCTAAG
18010150 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTAATTCCCAGTCTAAGCT
Found at i:18010135 original size:900 final size:895
Alignment explanation
Indices: 18007394--18010178 Score: 3568
Period size: 931 Copynumber: 3.1 Consensus size: 895
18007384 GTTGACTTAG
* *
18007394 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG-TAGCGGCAGCACATGCCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTA-CGGCAGCACATGCTGG
* * **
18007458 GCTCGGGCATGTGCTAGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGC-GCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAG
* * *
18007523 AACCTGACCGGTGGCATTCGGGTTTCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
129 AACCTGACCGGCGGCATTAGGGTTTCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * * *
18007588 GGTGAGTGCTGGTATTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCAAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
** * *
18007653 CCCCCTTAAAGAGCATTTGAGATTTTGTAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATA
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
18007718 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
18007783 GCATGCCAACAAAAATACAAAGATCACATCCACTAAGTTTGATGCCAAAGCTCCTTCCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGTGCCAAAACTCCTT-CGAAAAAA
* * *
18007848 TTTTACAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
453 TTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
18007913 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
18007978 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGGTTGCGC
583 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGC
* * * *
18008043 ATCCCGTCTCTCTGGTCGGCTTAGTGCCCGCCCGCCCGCCCGCTC-CTCGTTTCGTCAGTTGGCT
648 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-CTCGCTCGCTCGTTTCGTCGGTTGGCT
* * * *
18008107 TAGGCACACGGAGTTCATTCCCAGTCTAAGATCGGACTGGA-CTGAGGGTTGCAGCAGCAGGATC
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATC-GAGGGTTGGA-CAGCAGAATC
* * ** * * ** * * *
18008171 GACAGCACACAGTA-GTAGACCCGATCGATCCCCGACTTGCGTATCCCACCCCTTTGGCCGGTTA
775 GACAGCAC-GAGGAGGGGGACCCGACCGATCCCCGGCTTGC-TAT-CTGCCCCTCTGG-CGGCTG
* * * *
18008235 AGCACCCATACGCTCATTTCGTGGGTTGACTTAAGCGTACGAAGTTCATTCCCAGTCTAAGCATA
836 AGCGCCCGTACGCTCGTTT--T--G-TG------G-GT-TG-A---C-TT---AG-----GCATA
18008300 CGGAGTTCATTCCCAGTCTAA
875 CGGAGTTCATTCCCAGTCTAA
* * * *
18008321 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* *
18008386 CTGGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCAGAGA
66 CTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
** *
18008451 ACCTGACCGGCGGCATTAGGGTTTCAACGATCGGGGGTGTCGGGGGTGTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTAGGGTTTCGGCGATCGGGGG-GCCGGGGG-GTGTGCGCACATGATGTG
** * * * * *
18008516 AAACGGGTACTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAAGTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* **
18008581 ACCCCCTTAGAGAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCAAAA
258 ACCCCCTTA-A-AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
18008646 ATGGGGACATTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTT
** * * *
18008711 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACGAAGCGTAGTGTCAAAACTGCTTTCGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGTGCCAAAACT-CCTTCGAAA
* *
18008776 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGGAAAATAGAAAACGAGTCGTC
450 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
* **
18008841 TTGCCCTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGATATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
18008906 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCAAGGCTTG
580 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTG
* * *
18008971 CACATCCCGTCTCTCTGGCGGGCG-ACGTGCCCGCCCG-CCCTC-C-CGCTCGTTTTGTCGGTTG
645 CGCATCCCGTCTCTCTGGCCGGCGTA-GTGCCCGCCCGCCCCTCGCTCGCTCGTTTCGTCGGTTG
* * *
18009032 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCAAGGGTTACGACAACA-AG
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTT-GGACAGCAGA-
* * *
18009096 ATC-AGCAGCATGCA-GAGAGGGACCCGACCGATCCACGGCTTGCTCATCTCGCCCCTCTGGCAG
772 ATCGA-CAGCACG-AGGAGGGGGACCCGACCGATCCCCGGCTTGCT-ATCT-GCCCCTCTGGC-G
* * * * *** *
18009159 ACTGTGCGCCTGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAA
832 GCTGAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
18009223 ACATATGGAGTTCATTCACGGTCTAAGATC-GAACTGGACTGAGGGTTACGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTACGGCAGCACATGCTGG
* * * **
18009287 GCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGCCAGGGCACCATCACCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAG
* * * *
18009352 AACCTGACCGACGGCATT-GTGGTTTCGGGGATCGGTGGGCCGGGGGGTGTGCACACATGATGTG
129 AACCTGACCGGCGGCATTAG-GGTTTCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
18009416 CGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
18009481 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTGAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
18009546 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAATTTTTTA
323 GGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
18009611 TGCATGCCAA-AAAAATTACAAGGATCACGTCTAC-CAGTTTGGGGCCAAAACTCCTTCTAAGAA
388 TGCATGCCAACAAAAA-TACAAGGATCACGTCTACGAAGTTTGGTGCCAAAACTCCTTCGAA-AA
* *
18009674 AATTTTAAAAAAT-TTGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
451 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
18009738 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTCTGAACTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
18009803 ATTGGCACATAAAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCATGGCTTGC
581 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGC
** *
18009868 GCATCTTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTCTCGCTCGCTCGTTTCGTCGGTTGG
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-CTCGCTCGCTCGTTTCGTCGGTTGG
* ** *
18009933 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGACAGTAGAAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTG-GACAGCAGAAT
* *
18009998 CGACAGCACGTGGAGGGGGACCCGACCGGTCCCCGGCTTGCTTGATCTGCCCCTCTGGTCGGCTG
774 CGACAGCACGAGGAGGGGGACCCGACCGATCCCCGGCTTGC-T-ATCTGCCCCTCTGG-CGGCTG
*
18010063 AGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAA
836 AGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
18010123 GCTTACGGAGTTCATTCCCCGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCA
18010179 AGATCGGCTG
Statistics
Matches: 1623, Mismatches: 201, Indels: 95
0.85 0.10 0.05
Matches are distributed among these distances:
896 201 0.12
897 35 0.02
898 143 0.09
899 2 0.00
900 301 0.19
901 18 0.01
902 167 0.10
907 2 0.00
910 2 0.00
911 1 0.00
914 1 0.00
915 1 0.00
916 2 0.00
917 1 0.00
923 2 0.00
927 151 0.09
928 130 0.08
929 84 0.05
930 4 0.00
931 372 0.23
932 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAA
CCTGACCGGCGGCATTAGGGTTTCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGTGCCAAAACTCCTTCGAAAAAATTT
TAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCTCGCTCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGGACAGCAGAATCGACAGC
ACGAGGAGGGGGACCCGACCGATCCCCGGCTTGCTATCTGCCCCTCTGGCGGCTGAGCGCCCGTA
CGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:18010274 original size:185 final size:184
Alignment explanation
Indices: 18009938--18010336 Score: 507
Period size: 185 Copynumber: 2.2 Consensus size: 184
18009928 GTTGGCTTAG
* *
18009938 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGACAGTAGAATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGAAGAATCGACA
*** * * *
18010003 GCACGTGGAGGGGGACCCGACCGGTCCCCGGCTTGCTTGATCTGCCCCTCTGGTCGGCTGAGCGC
66 GCACACAGAGGGGGACCCGACCGATCCCCGACTTGC-GGATCTGCCCCTCTGGTCGGCTGAGCGC
* *
18010068 CCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAA
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAA
* * * * *
18010123 GCTTACGGAGTTCATTCCCCGTCTAAGATCAGACCAGA-CTGAGGGTTGCGGCAGCAAG-ATCGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCGACAG-AAGAATCGA
* * **
18010186 CTGCACACAGAGGGGGACCTGGTCGATCCCCGACTTG-GGCATCTCGCCCCTCTGGTCGGCTGAG
64 CAGCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGG-ATCT-GCCCCTCTGGTCGGCTGAG
* * * *
18010250 GGCCCGCATGGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTTTAA
127 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAA
* *
18010308 GCATACAGAGTTCATTCTCAGTCGAAGAT
1 GCATACAGAGTTCATTCCCAGTCTAAGAT
18010337 TAGATCGAAC
Statistics
Matches: 182, Mismatches: 28, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
183 1 0.01
184 5 0.03
185 174 0.96
186 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGAAGAATCGACA
GCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGGATCTGCCCCTCTGGTCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAA
Found at i:18012820 original size:26 final size:26
Alignment explanation
Indices: 18012784--18012842 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
18012774 GTTGACTTAG
18012784 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
18012810 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18012836 -CAT-CGGA
1 GCATACGGA
18012843 TCGGACCGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 25 0.78
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18013718 original size:26 final size:26
Alignment explanation
Indices: 18013689--18013738 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18013679 GACTTAGGCA
18013689 TACGGAGTTCATTCCCAGACTAAGCG
1 TACGGAGTTCATTCCCAGACTAAGCG
* *
18013715 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCCAGACTAAG
18013739 ATCGAACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGACTAAGCG
Found at i:18014145 original size:26 final size:26
Alignment explanation
Indices: 18014096--18014148 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18014086 GTTGACTTAG
*
18014096 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCACAGTCTAA
* *
18014122 GCATACGGAGTTCATTCACGGTCTAA
1 GCATACGGAGTTCACTCACAGTCTAA
18014148 G
1 G
18014149 ATAGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCACAGTCTAA
Found at i:18014290 original size:410 final size:410
Alignment explanation
Indices: 18013511--18014315 Score: 1168
Period size: 410 Copynumber: 2.0 Consensus size: 410
18013501 TCTGTTCGTA
18013511 TCGTCAATTGGCTTACGCATACGGAGTTCATTCCCAGTCTAAGATCTGGCCAGAACGAGGGTTGC
1 TCGTCAATTGGCTTACGCATACGGAGTTCATTCCCAGTCTAAGATCTGGCCAGAACGAGGGTTGC
* *
18013576 GACAGCAAGATCGACAGCACGAAGAGGGGGACCCGATCGATCATCGGCTTACGCATCCCGCCCCT
66 GACAGCAAGATCGACAGCACGAAGAGGGGGACACGATCGATCACCGGCTTACGCATCCCGCCCCT
* * * *
18013641 CTGGCCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
131 CTGGCAGACTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCA
* * *
18013706 GACTAAGCGTACGGAGTTCATTCCTAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACAT
196 GACTAAGCATACGGAGTTCATTCCTAGTCTAAGATAGAACCGGACCGAGGGTTGCGACAGCACAT
* ** *
18013771 GCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGT
261 GCTGGGCTTGGGCATGTGCTAGTGCCACATTTTTCTTAATCGAGGCACCATCGCCAGAGCATCGT
*
18013836 CGGAGAACCTGACTGGTGGCATTAGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCACACAT
326 CGGAGAACCTGACCGGTGGCATTAGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCACACAT
18013901 GATGTGCCCGGCTGCTTGTT
391 GATGTGCCCGGCTGCTTGTT
* * ** *
18013921 TCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGGACTGGATCGAGGGTTG
1 TCGTCAATTGGCTTACGCATACGGAGTTCATTCCCAGTCTAAGATCTGG-CCAGAACGAGGGTTG
* * * * ** * * *
18013985 C-AGCAGTAGGATCGGCAGCATGCGGAGGGGGACACGATCGATCCCCGGCTTGCGCATCCTGCCC
65 CGA-CAGCAAGATCGACAGCACGAAGAGGGGGACACGATCGATCACCGGCTTACGCATCCCGCCC
* ** *
18014049 CTCTGGCAGACTGAGCGCCCGTACGGTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCC
129 CTCTGGCAGACTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCC
* * *
18014114 CAGTCTAAGCATACGGAGTTCATTCAC-GGTCTAAGATAGGACCGGACCGAGGGTTGCGACAGCA
194 CAGACTAAGCATACGGAGTTCATTC-CTAGTCTAAGATAGAACCGGACCGAGGGTTGCGACAGCA
* *
18014178 CATGCTGGGCTTGGGCATGTG-TCAGTGCCGCATTTTTCTTAATCGTGGCACCATCGCCAGAGCA
258 CATGCTGGGCTTGGGCATGTGCT-AGTGCCACATTTTTCTTAATCGAGGCACCATCGCCAGAGCA
* * * * *
18014242 TCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGC
322 TCGTCGGAGAACCTGACCGGTGGCATTAGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCAC
18014307 ACATGATGT
387 ACATGATGT
18014316 ACGATGGGTG
Statistics
Matches: 349, Mismatches: 42, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
409 5 0.01
410 343 0.98
411 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.22
Consensus pattern (410 bp):
TCGTCAATTGGCTTACGCATACGGAGTTCATTCCCAGTCTAAGATCTGGCCAGAACGAGGGTTGC
GACAGCAAGATCGACAGCACGAAGAGGGGGACACGATCGATCACCGGCTTACGCATCCCGCCCCT
CTGGCAGACTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCA
GACTAAGCATACGGAGTTCATTCCTAGTCTAAGATAGAACCGGACCGAGGGTTGCGACAGCACAT
GCTGGGCTTGGGCATGTGCTAGTGCCACATTTTTCTTAATCGAGGCACCATCGCCAGAGCATCGT
CGGAGAACCTGACCGGTGGCATTAGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCACACAT
GATGTGCCCGGCTGCTTGTT
Found at i:18015675 original size:869 final size:861
Alignment explanation
Indices: 18014122--18016352 Score: 2774
Period size: 869 Copynumber: 2.5 Consensus size: 861
18014112 CCCAGTCTAA
* * * *
18014122 GCATACGGAGTTCATTCACGGTCTAAGATAGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATAGAACCGGACTGAGGGTTGCGACAGCACATGCTGGG
* * * * * * *
18014187 CTTGGGCATGTG-TCAGTGCCGCATTTTTCTTAATCGTGGCACCATCGCCAGAGCATCGTCGGAG
66 CTCGGGCATGTGCT-GGTGCCACATTTTTCTTCATCGAGGCACCATCGTCAGAGCATCGCCGGAG
*
18014251 AACCTGACCGGTGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACC-GTGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* *
18014316 ACGATGGGTGCTGGTACTTGGCCTTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
*
18014381 CACCCCCTTGAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTT-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
18014446 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGAAGTTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTG-AGTTTTTAGCTGAATTTTTTT
** ** *
18014511 GTGCATGCCAACAAAAATACAAGGATCACACCTACAAAGTTTGGGGTGAAAAGTCCTTTC-ATAA
385 GTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTTCGA-AA
* * * *
18014575 AAATTTAAAAAAAATCCCGAACCAAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTC
449 AAATTT-AAAAAAATCTCAAACCAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTC
18014640 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGG
513 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGG
* ** * *
18014705 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTA
578 CATTGGCACGCAGAAATATGAAGATGCACCTAAACCCACCTACCACCCTATCGATCCACGACTTA
* ** ** *
18014770 AGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCAC-GCTTGTTTC-ATCGGTT-GGCT-T
643 AGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC-CTGCCCG-CCCGATCAGTTCGGCTGT
* * * * * *
18014831 AGGCAAACAAAGTTCATTCCCAGTCTCAGATCGGA-TCGGACCGACGGTTACGGCAGCAAGAAT-
706 AGG----CAAAG-GCATTCCCAATCTAAGATCAGACT-GGACCGAAGGTTACGACAG-AAGAATC
* * *
18014894 GGCAGCACGCAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCTCGCCCCTCTAGCCAACTGA
764 AGCAGCACGAAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTAGCCAACTGA
*
18014959 GTGCCCGCACACTCGTTTCATAGGTTGACTTAG
829 GCGCCCGCACACTCGTTTCATAGGTTGACTTAG
* * *
18014992 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGTGACAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATAGAACCGGACTGAGGGTTGCGACAGCACATGCTGGG
* * * * *
18015057 CTCGGTCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCACCATCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCGTCAGAGCATCGCCGGAGA
* *
18015122 ACCAGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCG-TGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
18015187 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATGCCTCATCAAACCTCGAGAACTCACT
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAACCTCGAGAACTCACA
* *
18015252 CCCCCTTAATGGGCATTTCGA-ATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAAT
259 CCCCCTTAA-GAGCATTT-GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
18015316 GGGGACACTTTTTTCAAATGGTGACAAAATCTTGTACACATCGAGTTTTTAGCTGAAGTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTGAGTTTTTAGCTGAATTTTTTTG
* *
18015381 TGCATGCCAACAAAAATACAAGGATCACGTCTACTATGTTTGGGGCCAAAACTCCTTTCGAAAAA
386 TGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
18015446 ATTTAAAAAAATCTCAAACCGTAAAAAA-TTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCT
451 ATTTAAAAAAATCTCAAACC--AAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCT
* * *
18015510 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAGAAATGGC
514 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGC
* * **
18015575 ATTGGCACGTAGAAATATGAAGCTGCACCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
579 ATTGGCACGCAGAAATATGAAGATGCACCTAAACCCACCTACCACCCTATCGATCCACGACTTAA
* * * * * *
18015640 GCATCCTGTCTCTCTGGCCGACGTAGTGTCCGCCCGCCTGCCCGCCCGCTCATTTCGTCTGTTGG
644 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGATCAGTTCGGCTGTAGG
** ** * *
18015705 CTTAGGCATTCCCAATCTAAGATCAGACTGGACCGAAGGTTGTGACAGTAGGATCAGCAGCACGA
709 CAAAGGCATTCCCAATCTAAGATCAGACTGGACCGAAGGTTACGACAGAAGAATCAGCAGCACGA
* * * * * * ** *
18015770 ATAGGTGGACCCGGCCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGTCGGCTGAGCGCCCGTAC
774 AGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTAGCCAACTGAGCGCCCGCAC
* *
18015835 ACTCGTTTCGTGGGTTGACTTAG
839 ACTCGTTTCATAGGTTGACTTAG
*
18015858 GCATACAGAGTTCATTCCCAGTCTAAGCATATAGAGTTTATTCCCATCTAAGTTTGGACCAGATC
1 GCATACGGAGTTCATTCCCAGTCTAAG---ATAGA----A----C--C-------GGA-C---T-
* * * * * *
18015923 GAGGGATGCGGCAGCACATGCTGGGCTCGGGAATGTGCTGGTGCCACAGTTTTCTTCGTCGGGGC
41 GAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGC
* **
18015988 ACCATCGTCAGAGCATCGCCGGAGAACCTGACCCGTGGCATTGGGGTTTCGATGATCGGGGGGGT
106 ACCATCGTCAGAGCATCGCCGGAGAACCTGA-CCGTGGCATTGGGGTTCCGGCGATCGGGGGGG-
** * *
18016053 TGGGGGGGTGTGCGCACATGATGTGTGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
169 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTAT
* * * *
18016118 CCCTAATCAAACCTTGAAAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGC
233 CCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAGAGCATTTGAGATTTTACAGGTTTGCTGC
*** *** * *
18016183 CAGTA-CCTATTAAAGTGTCTGAAACAAGGATGTTTTTTTCCAATGGTCACAAAATTTTGTACAC
297 CAGTAGCC-ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
18016247 TTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAGACAAGGATCACGTCTACCAAGT
361 -TTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGT
* *
18016312 TTGGGGCCAAAACTCCTGTCGAAAAAATTTTAAAAAATCTC
425 TTGGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATCTC
18016353 GCACGCCCGT
Statistics
Matches: 1172, Mismatches: 143, Indels: 70
0.85 0.10 0.05
Matches are distributed among these distances:
865 4 0.00
866 142 0.12
867 4 0.00
868 21 0.02
869 454 0.39
870 158 0.13
871 4 0.00
873 1 0.00
877 1 0.00
879 1 0.00
886 3 0.00
887 1 0.00
890 1 0.00
891 111 0.09
892 261 0.22
893 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (861 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATAGAACCGGACTGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCGTCAGAGCATCGCCGGAGA
ACCTGACCGTGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTA
AAAAAATCTCAAACCAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CGCAGAAATATGAAGATGCACCTAAACCCACCTACCACCCTATCGATCCACGACTTAAGCATCCC
GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGATCAGTTCGGCTGTAGGCAAAGGC
ATTCCCAATCTAAGATCAGACTGGACCGAAGGTTACGACAGAAGAATCAGCAGCACGAAGAGGGG
GACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTAGCCAACTGAGCGCCCGCACACTCGTT
TCATAGGTTGACTTAG
Found at i:18015887 original size:26 final size:25
Alignment explanation
Indices: 18015858--18015909 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
18015848 GTTGACTTAG
18015858 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCA-TCTAA
* *
18015884 GCATATAGAGTTTATTCCCATCTAA
1 GCATACAGAGTTCATTCCCATCTAA
18015909 G
1 G
18015910 TTTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCCATCTAA
Found at i:18017470 original size:26 final size:26
Alignment explanation
Indices: 18017434--18017486 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18017424 CTTGACTTAG
* *
18017434 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
18017460 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
18017486 G
1 G
18017487 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:18020141 original size:26 final size:26
Alignment explanation
Indices: 18020112--18020162 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18020102 GTTGACTTAG
* *
18020112 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
18020138 GCATACAGAGTTCATTCCTAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
18020163 TGATCAGATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18021041 original size:26 final size:26
Alignment explanation
Indices: 18021005--18021057 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18020995 GTTGACTTAG
18021005 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18021031 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18021057 G
1 G
18021058 ATCAGACAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18021512 original size:890 final size:887
Alignment explanation
Indices: 18019244--18022211 Score: 3985
Period size: 890 Copynumber: 3.3 Consensus size: 887
18019234 GTTGACTTAG
* * ** *
18019244 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTGTGGCAGCTCATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGGGTTACGGCAGCACATGCTGG
* * * *
18019308 GCTCGGGCAAGTGCTGCTGCCCCATATTTCTTCGTCGGGGCACCATCGCCAAAGCATCGTCGGAG
66 GCTCAGGCAAGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---CA----C----CATCGTCGGAG
** * ** * **
18019373 AACCTGACCAACGACATTTTGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCTCATGTGATGT
120 AACCTGACTGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
*
18019438 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCA
184 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
18019503 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGT-TCGAA
249 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAA
* * * *
18019567 AAGGGGATAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTT
313 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
18019632 TGTGCATGCCAACAAAAATACAAGGATCA-AGTCTACCAAGTTTGGGGTCAAAACTCTTTCCAAA
378 TGTGCATGCCAACAAAAATACAAGGATCACA-TCTATCAAGTTTGGGGCCAAAAATCCTTCCAAA
* * *
18019696 AAAATTTTAAAAAATCCCAAACCGT-AAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCAT
442 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGT
* *
18019760 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAGAAATG
507 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
18019825 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCCT
572 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
18019890 GCGCATCCAGTCCCTCTGGTCGGTGTAG--CGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
637 GCGCATCCCGTCTCTCTGGCCGGCGTAGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTA
* * *
18019953 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGA-GGTTATGGCAGTAGGATCGAT
702 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACAGAGGGTTACGGCAGCAGGATCGAT
* * * * * * *
18020017 AGCATGCAGAGGGGGACCCG-GCTGATCCCCAGCTTGCTCATCCCGCCCTTCTGGCCGACTGAAC
767 AGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
18020081 GCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
831 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
18020138 GCATACAGAGTTCATTCCTAGTCTATGATCAGATCAGATCAGATCAAGGGTTACGGCAGCACATG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG----GACCGAGGGTTACGGCAGCACATG
* ** * * *
18020203 CTGGGCTCAGGCAAGTGTTGGTGCCGCATTTTTCTTCACCGGGGCAACATCGTTGGAGAACCTAA
62 CTGGGCTCAGGCAAGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGA
* * * *
18020268 CAGGCGGTATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
127 CTGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* * * *
18020333 TGATGCTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
192 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
18020398 GAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
257 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
18020463 CTTTTTTCAAATGGTCACAAAATCTTATACACTTCGTGTTTTTAGCTGAATTTTTTTGTGCATGC
322 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
18020528 CAACAAAAATACAAGGATCACGTCT-TCCAAGATTGGGGCCAAAAATTCTCCCAAAAAAATTTTA
387 CAACAAAAATACAAGGATCACATCTAT-CAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTA
* *
18020592 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGACAAATAGAAAACGAGTCGTCTTGCCATG
451 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
18020657 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGGCA
516 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
18020722 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
581 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
18020787 GTCTCTCTGGCCGGCGTACTGCCCGCCCGCCTGCCCGTTCGTTTCGTTGGTTGGCTTAGGCATAC
646 GTCTCTCTGGCCGGCGTA--GCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * * *
18020852 GGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACGGCAACAGGATCGATAGCACAC
709 GGAGTTCATTCCCAGTCTAAGATTGGACCAGACAGAGGGTTACGGCAGCAGGATCGATAGCACGC
* *
18020917 AGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCGC
774 AGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
18020982 GCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
18021031 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGACCGGGGGTTGCGGCAGCTCATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGGGTTACGGCAGCACATGCTGG
* * *
18021095 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGAACAC-GACTG
66 GCTCAGGCAAGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAAC-CTGACTG
* * * * *
18021159 ACGGCGTTGGGGTTCCGACAATCGGGGGGGCCGGGGGAGGTGTACGCACGTGATGTGGGATGGGT
130 ACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGG-GGTGTGCGCACATGATGTGCGATGGGT
* *
18021224 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAGCAAACCTCAAGAACTCACACCCCCTT
193 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
18021289 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGTAATGGGGACAC
258 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
18021354 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
323 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
18021419 AAAAAAAATACAAGGATCACATATATCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAA
388 AACAAAAATACAAGGATCACATCTATCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAA
* * * *
18021484 AAATCCTGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAAGAGTCGTCTTGCCATGAA
453 AAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
18021549 ACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
518 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
*
18021614 CAGAAATATGACGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG-TTGCGCATCCCGT
583 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
18021678 CTCTTTGGCCGACGTAGAGCCCGCCTGTCCGTCCGCCCACTCATTTCATCGGTTGGCTTAGGCAT
648 CTCTCTGGCCGGCGT--AGCCCGCCCG-CC-T--GCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
* * * * * * **
18021743 ACCGAGTTCATTCCCAATCTAAGATCGGACCAGACAAAGGGTTGCAGCAGCAGGATCGGCAGCAC
707 ACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACAGAGGGTTACGGCAGCAGGATCGATAGCAC
* * * * * * ** *
18021808 GTAGAGGGGGACTC-ATTCGATGCTCGGCTTGTGCCTCCCGCCCCTCTGGTAGGCTAAGCGCCCG
772 GCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* *
18021872 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCAAGTCTAA
836 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
18021924 GCATACGGAGTTCATTCCTAGTCTAAGATC-GAACCA-GACCGTGGGTTACGGTAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGGACCGAGGGTTACGGCAGCACATGCTG
* * * * *
18021987 GGCTC-GAGCATGTGCTGGTGCCACATTTTTGTTTGTCGGGGCACCATCGTCGGAGCATCGCCGA
65 GGCTCAG-GCAAGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG-A--ACC--
* * * * *
18022051 AGAACCTGATCGGCGGCATTGGGTTTCTG-TGATCGGGGGGGTCGGGGGGTGTGCGCACATGATG
124 TG-A-CTGA----CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* *
18022115 TGCTA-GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACC-CTGAGAACT
183 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-GAGAACT
18022178 CACACCCCCTTAAAGAGCATTTGAGATTTTACAG
247 CACACCCCCTTAAAGAGCATTTGAGATTTTACAG
18022212 NNNNNNNNNN
Statistics
Matches: 1829, Mismatches: 203, Indels: 78
0.87 0.10 0.04
Matches are distributed among these distances:
887 273 0.15
888 329 0.18
889 39 0.02
890 438 0.24
891 3 0.00
892 78 0.04
893 434 0.24
894 33 0.02
895 3 0.00
896 3 0.00
898 1 0.00
899 58 0.03
900 91 0.05
901 18 0.01
902 4 0.00
903 11 0.01
904 13 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (887 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGGGTTACGGCAGCACATGCTGG
GCTCAGGCAAGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACTGA
CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACATCTATCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAA
TCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGGCGTAGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATTGGACCAGACAGAGGGTTACGGCAGCAGGATCGATAGCACGCAGAGGGG
GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:18021934 original size:26 final size:26
Alignment explanation
Indices: 18021898--18021950 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18021888 GTTGACTTAG
18021898 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
* *
18021924 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
18021950 G
1 G
18021951 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:18024115 original size:26 final size:26
Alignment explanation
Indices: 18024086--18024138 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18024076 CCGGTCCAAT
18024086 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
18024112 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
18024138 C
1 C
18024139 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:18026387 original size:902 final size:900
Alignment explanation
Indices: 18023212--18064248 Score: 23440
Period size: 904 Copynumber: 45.4 Consensus size: 900
18023202 NNNNNNNNNN
* * *
18023212 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAA-CCATGAAACGAGCGTGGCAAGCGCCTG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-GC--G-GGC-G
* * * *
18023276 CTCA-CCGGCCAGAGGGGCAGGATGCGCAAGCCCG-GGATCGGCCGAGTCCTCCTCTACGTGCTG
61 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTG
* ** * * *
18023339 CAGATCCTGCTATCGCAACCCTCCA-TCCGGTCTGATCTTAAACTAGGAATGAACTCCGTATGCC
125 CCGATCCTGCTGCCGCAACCCT-CAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * *
18023403 TAAGCCAAGCGACGAAATGAGTGGA----CGGGCGGGCAATACGCCAGCCAGAGAGACGGGATGC
189 TAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
* **
18023464 GCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAAT
254 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
* *
18023529 GCCATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGACGTTTCATGGCA
319 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * **
18023594 AGACGACTCCTTTTCTATTTTTCACCATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTAAAAT
384 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA-GATTTTTTAAAAT
* * **
18023658 TTTTTCGGATGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGCCTTTTT-TTGGCATGCA
448 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
18023722 CAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
513 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
18023787 ATTTCAGACGCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGT
578 ATTTCAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
18023852 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCG
643 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
18023917 CACATCATGTACGCACACACCCCCCCAG-CCCCCCGATCTCCAGAACCCCAATGCCGCCGGTCAG
708 CACATCATGTGCGCACAC-CCCCCCCGGCCCCCCCGATCT-CGGAACCCCAATGCCGCTGGTCAG
** * * * * ** * * * **
18023981 GTTCTATGGCGGTGGTTCGATGATGGTGCCTCGACGAAGAAAAATGTGACACCAGCACATGCCTA
771 GTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * *
18024046 AGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAAACTGGGAATGAACTCCGTAT
836 AGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
18024111 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGACGCTTAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * * * *
18024176 TCGGCCAAAGGGGTAGGATGCGTAAGCCG-GAGATCGGTCGGGTCCCGCTCTGCGTGCTGGCAAT
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAG-GATCGGCCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * * **
18024240 CTTGCTACCGCAACCCTC-GATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
130 CCTGCTGCCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
18024304 CAACCGACGAAACGAGCGGGTGGATGGGCGGGCAGGCACTACGCCGACCAGAGAGATGGGATGCG
194 CAACCGACGAAACGAGC----GGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
* * * * *
18024369 CAAGTCGTGGATCGATAGGGTGGTAGTTGGGTTTAGGCACATCTTTATATTTCTGCATGCCATTG
255 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
* *
18024434 CCTTTTTTAGGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
320 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * *
18024499 GACTATTCGTTTTCTATTTTTCATGATTTT-AAAACCTTTTTGCGGTTCGGGATTTTTTAAAATT
385 GACGACTCGTTTTCTATTTTTCACGATTTTCAAAA-CTTTTTACGGTTCGAGATTTTTTAAAATT
* * * * * *
18024563 TTTTTGGAAGGAGTTTTTGACCCAAACTTGGTAGACGTGATCCTTGTTTTTTTTTTGGCATGCAA
449 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
18024628 AAAAAAATTTAGCTAAAAATTCGAAGTGTACAAGATGTTGTGACCATTTGAAAAAAGTGTCCCCA
514 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
18024693 TTTCAGACACTTTAATTGCTACTAG-TAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
579 TTTCAGACACTTTAATGGCTACT-GCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
18024757 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGCCAAGTACCAGCACCCATCA
643 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
18024821 CACATCATGTGCGCACA-CCCCCCCAG-CCCCCCGATCGCCGGAACCCTAATGCCG-TCGATCAG
708 CACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCT-GGTCAG
* *
18024883 GTTCTCCGACGATGCTCCGGCGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCG
771 GTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * * *
18024948 AGCCTAACATGTGCTGCCGGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTA
836 AGCCCAGCATGTGCTGTC-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
*
18025013 A
900 T
* * * * * * *
18025014 GCTTACAATGGGAATGAACTACGTATGCCTATGTCAACCAATGAAACGAGCGTGCGGGGGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
18025079 CCGACCAGAGGGGCGGGATGCGCAAGCC-AGGGATCAGCCGGGTCCCCCTCTGCATGCTGTCGAT
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * *
18025143 CCTGCTGCCGCAACCCTCAGTCTGGTCTAAGCTTAAACTGGGAATGAACTCCATATGCCTAAGCC
130 CCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** * *
18025208 AACCGATGAAACGAGCGGGTGGGTGGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGATGGGTT
195 AACCGACGAAACGAGC--------GGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT
*
18025273 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTACATGCCA
252 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCA
* * *
18025338 GTGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGG
317 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * ** *
18025403 CAAGACGATTCGTTCTT-TATTTTTCACCATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTTAA
382 CAAGACGACTCGTT-TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA-GATTTTTTAA
* *
18025466 AATTTTTTCGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTCTTTTTGTTGGCAT
445 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
*
18025531 GCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
510 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
18025596 CCCATTTCAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
575 CCCATTTCAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
18025661 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAAGGCCAAGTACCAGCACCCA
640 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * *
18025726 TCACACACCATGTGCGCACACGCCCCCCCGACCCCCTCGATCTCTGAAACCCCAATGCCGCTGGT
705 TCGCACATCATGTGCGCACAC-CCCCCCCGGCCCCCCCGATCTC-GGAACCCCAATGCCGCTGGT
* * * * * *
18025791 CAGGTTCTCTGACGATGGTCCGGCAATGGT-CCCTC-AGCGAAGAAAAATGTGGCACCAACAAAT
768 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCC-CGA-CGAAGAAAAATGCGGCACCAGCACAT
** * ** *
18025854 GCCCGAGCCCAGCATGTGCTGTCGCAATGCTCGGTCCGGTCCGATCTTAGATTGAAAATAAACTC
831 GCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
18025919 CGTAT
896 CGTAT
* * *
18025924 GCTTAGACTGCGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * **
18025989 CCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCAGTCGGCTCCCCTTCTGTATGCTGCCGATC
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * *
18026054 TTGCTGCCGCAACGCTCAGTCTAGTCTGATCTTAAACTGGGAATGAACTCTGTATGCCTAAGCCA
131 CTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * ** *
18026119 ATCGATGAAACGAGCGGATGGGCGGGCGGGCACTACACCGGCCAGAGAGACAGGATGCGCAAGCC
196 ACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
18026184 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
* *
18026249 TTATGGCTTGTAAATTCATACAATGGTCCCTTTAGCCTTCACGTGAAGTTTCATGGCAAGGCGAC
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
18026314 TAGTTTTCTATTTTTCACGCTTTTCAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGG
391 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* * *
18026379 AAGGAGTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAA
456 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
18026444 TTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCCCATTTGAGA
521 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
18026509 CACTTTAATGGCTACT-CGAAGCAAACCTGTAAAATGTCAAATGCTCTTTAAGGGGGTGTGAGTT
586 CACTTTAATGGCTACTGC-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
18026573 CTCGAGGTTTGATGAGGGATAGGGGGGCCAATATGAGGGCCAAATACCAACACCCATCGCACATC
650 CTCGAGGTTTGATGAGGGATA-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * *
18026638 ATGTGCGCACACCCCCCTCGGCCCCTCCGATTGTTGGAACCCCAATGTCGCCGGTCAGGTTCTCC
714 ATGTGCGCACACCCCCCCCGGCCCCCCCGA-TCTCGGAACCCCAATGCCGCTGGTCAGGTTCTCC
** * ***
18026703 GGTGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATTTAGCACCAGCACATGCCCGAGCCCAG
778 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
** * * * *
18026768 CATGTGCTACCACAACCCTCGGTCTGGTTCGATCCTAGACTGGGAATGAACTCCGTAT
843 CATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
** ** * * * **
18026826 GCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCATAAAATGAGTGTGTGGGCATTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * ** * * ** * *
18026891 CCGACCAGAGGGGCGGGATATGCAAGTCGAGGATCAACCAGGTCCCACTCTATGTGCTACTGATC
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* * ** * * *
18026956 TTGCTACCGCAACCCTTGGT-TCAGTCTGATCTTAGACGGGGAATGAACTCCGTATCCCTAAGCC
131 CTGCTGCCGCAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * **
18027020 AATCGATGAAATGATCAGGCGGGCGGACGGGTGGGCGGGCATTATATCGGCCAGAGAGACGGGAT
195 AACCGACG--A--A--A--CGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT
*
18027085 GCGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCA
252 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCA
18027150 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
317 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * *
18027215 CAAGACGACTCGTTTTTTATTTTTCATGATTTTCAAAACTTTTTATGGTTCGAGATTTTTAAAAA
382 CAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAA
* *
18027280 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATTCTTTTATTTTT-TTGGCATGC
447 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * *
18027344 ACAAAAACATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCC
512 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
18027409 CATTTCAGACACTTTAATGGCTACTG-CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
577 CATTTCAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* ** *
18027473 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGTTCCAAGTACCGGCACCCATC
642 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * *
18027538 GCACATCATGTGCGCACACCGACCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCTGCCT-ATC
707 GCACATCATGTGCGCACACC-CCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCG-CTGGTC
* * * *
18027602 AGGTTCTTCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACTGCACCAGCACATGCC
769 AGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * ** * *
18027667 TGAACGTAGCATGTGCTGTCGTAA----C---CC--TCAG-TC-----C----AAT---CT--G-
834 CGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
18027707 AT
899 AT
* * * **
18027709 -CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAAAGAGCGTGCGGGCATTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
18027773 CCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATC
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * * *
18027838 CTACTGCCCCAACCCTCGGTCTGATTTGATCTTAGACTGGGAATGAACACCATATGCCTAAGCCA
131 CTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
18027903 ACCGACGAAACGAGCGGCCGGGCGGGTGGGCGGGCAATA---C-GCCAGAGGGATGGGATGCGCA
196 ACCGACGAAACGAGCGGACGGGC----GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* ** * * *
18027964 AGTCGTGGATCGATAGGGTGGTAGGTCAGTTTAGGCACATCTTCATATTTTTTCTTGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* *
18028029 ATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAACCCTTCACGTGAAGTTTCATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* **
18028094 CAACTCGTTTTCTATTTTTCACGATTTTCAAAA-TTTTTGTGGTTCGAGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* *
18028158 TCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTGTTT-TTGGCATGCACAA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-TTTGTTGGCATGCACAA
* * *
18028222 AAAAATTCAGCAAAAAATTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
18028287 TCAGACAGTTTAATGGCTACTGGCAGCAAACCTGTAAAATGTCAAATGCTCTTTAAGGGGGTGTG
581 TCAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
18028352 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
18028417 ATCATGTGAG-A-ACACCCCCCGGCCCCCCCGATAGC-CGGAACCCCAATGCCG-TCGATCAGGT
711 ATCATGTGCGCACACCCCCCCCGGCCCCCCCGAT--CTCGGAACCCCAATGCCGCT-GGTCAGGT
* * * * * * * *
18028478 TCTTCGGCGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATACAGCACTAGCACATTCCCGAG
773 TCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * ** * * *
18028543 CCTAGCATATGTTGTCGCAACCCTCGGTCCAATCCAATCTTAGATTGGGAATGAACTCCATAT
838 CCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * ** *
18028606 GCTTATACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCAAGTGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * ***
18028671 CCGGCCAGAGGGTCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCTTCTGCATGCTATGGATC
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * * * * *
18028736 CTGCTACTGTAACCCTC-GATCCGATCCGATCTTAGACCGAGAATGAACCCCGTATGCCTAAGCC
131 CTGCTGCCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * **
18028800 AACCGACGAAACGATC-GAGCGGGCGGGCAGACGGGCACCACGTCGGCCAGAGAGACGGGATAAG
195 AACCGACGAAACGAGCGGA-CGGGC-GG--G-CGGGCACTACGTCGGCCAGAGAGACGGGATGCG
*
18028864 CAAGCCGTGGATCGATAGGGTGGTAGGTGGG-TTAGGGCACATCTTCATATTTCTACGTGCCAAT
255 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA-GGCACATCTTCATATTTCTACATGCCAAT
**
18028928 GAAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
319 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
** *
18028993 AGACGACTCGTTTTCTATTTTTTCACGATTTTCAAAACTTTTTACAATTCGAGACTTTTTAAAAT
384 AGACGACTCGTTTTCTA-TTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAAT
* *
18029058 TTTTTCGGAAGGAATTTTGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCATGCA
448 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
18029123 CAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAAGTGTCCG
513 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCC
* * *
18029188 TATTTTAGACACTTTAACGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGG
577 CATTTCAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
18029252 TTTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-C
642 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * * *
18029316 TGCACATCATGTGTGTACA--CCCCCCGGCCCCCTCGATCGTCGAAAGCCCAATGCCACCGGTCA
707 -GCACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCTGGTCA
* *
18029379 GGTTCTCC-A--A--------CGATGGTGCACCGACGAAGAAAAATGCGACACCAGCACATGCCC
770 GGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * * *
18029433 GAGCCCAGCTTGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGA-TGGCAATGAACTCCATA
835 GAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
18029497 T
900 T
* * * *
18029498 GCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACTCACGAAACGAGCGTGCTGGTGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
18029563 TCTGCCAGAGGGGTGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATC
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* ** * * * * *
18029628 CTACTGTTGCAACCCTCAGTCTGATCTGATCTTAGACTGAGAATGAACTTCGTATACCTAAGCTA
131 CTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
18029693 ATCGATGAAACGAGTGGGCGGGCGGGCAGGCGGGCACTACG-CCGCCAGAGAGACGGGATGTGCA
196 ACCGACGAAACGA----GCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
*
18029757 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* * *
18029822 ATTTTTATGGCTTGTAAATTCGTACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * **
18029887 CGACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * * *
18029952 TCGAAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTATTGGCATGCACAAG
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
18030017 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
18030082 TAGATACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
582 CAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
18030147 GTTCTCAAGGTCTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* ** *
18030212 TCATGTGCGCACA--CCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCTACCGGTCAGGTTCT
712 TCATGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCTGGTCAGGTTCT
** * * * * * * *
18030275 CCGGTGATGCTCCGACGATGGTACCCCGATGAAGAAAATTACGGCACTAGCATATGCCCGAGCCC
776 CCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * ** * * * * ****
18030340 AGCATGTGC--TCG--AGCC-CAG-CATGTCCCA-CTGCAACACTCGG--TCCGGTCCG-AT
841 AGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCT--TAGACTGGGAATGAACTCCGTAT
* * ** * *
18030392 -CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGAATACGGGCGCTCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
18030456 CTGGCCAAATGCGG-GGGATGCGCAAGCCAAGGATCGACCGGGTCCCTCTCTACGTGGTGCCGAT
66 CCGGCCAGA-GGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * * *** *
18030520 CCTGCTGCCACAACCCTCGGTCCGGTCTGATCCTAGACTATAAATGAACTCCGTATGCCTAAACC
130 CCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
18030585 AACCGACGAAATGA----ATGGGCGGGCGGGCACTTCGTCGGCTAGAGAGACGGGATGCGCAAGC
195 AACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
18030646 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT-TTGCATATTTCTACATGCCAATGCCAT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-CATATTTCTACATGCCAATGCCAT
* *
18030710 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTATGCCTTGACGTGAAG-TT--T-------C-
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
**
18030764 A-T-G-----------TCACGATTTTCAAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTC
389 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* ** * *
18030816 -GACAAGAGTTTTGGCCCCAAACTTATTACACGTGATCCTTGTATTCTTGTTGGCATGCACAAAA
454 GGA-AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
18030880 AAATTCAGCTAAAAATTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTA
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
18030945 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAG
583 AGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA-
* * *
18031009 GTTCTCAAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
18031074 TCATGTGCGCACACCCCCCTCC-GCCCCCCCGATCACTGAAAACCCAATGCCG-TCGATTAGGTT
712 TCATGTGCGCACACCCCCC-CCGGCCCCCCCGATCTC-GGAACCCCAATGCCGCT-GGTCAGGTT
** * * * * * * *
18031137 CTATGGCGATGATCCGGCGATGGTACCCTGATGAAGAAAAATGCGACACCAGCACATTCCCGAGC
774 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * *
18031202 CCAGCATGTCCTGTCGTAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
839 CCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
18031264 GCTTAGACTGGGAATGAACACCGTATGCCTAAGTCAATCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
18031329 CCAGCCAGAGGGGCGGGAAGCGGAAGCCGGGGATC-GCTCGAGTCCCCCTCTACGTGCTGTCGAT
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGC-CGGGTCCCCCTCTGCGTGCTGCCGAT
* * * *
18031393 CCTGTTGCCACAACCCTCAGT-TCGGT-TCAATCTTAAACTGGGAATGAACTCCGTATGCCTAAG
130 CCTGCTGCCGCAACCCTCAGTCT-GGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
*
18031456 CCAACCGACGAAATGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
193 CCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* *
18031521 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTACATGCCAATGCAA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* *
18031586 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGCCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
18031651 AACTCGTTTTCTATTTTTCACGATTTTCAAAAGTTTTTACGATTCGAGATTTTTTAAAATTTTTT
388 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * ** * * *
18031716 CAGAAGGAGTTTTGGGCCCAAACTTATTAGACGTGAACCTTGTATTCTTGTTGGCATGTACAAAA
453 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
18031781 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTC
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
18031846 AGATACTTTAATGGCTTACATGGCCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AGGGGGTTG
583 AGACACTTTAATGGC-TAC-T-GCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG-TG
* *
18031910 TGAGTTCTCAGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCCAAAATACCAGCACCCAT
644 TGAGTTCTC-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CC-AAGTACCAGCACCCAT
* * *
18031975 GCACACATCATGTGCGCACGA---CCCCCGACCCCCCCGATTGTCGGAACCCCAATGCCG-TCGG
706 -CGCACATCATGTGCGCAC-ACCCCCCCCGGCCCCCCCGA-TCTCGGAACCCCAATGCCGCT-GG
* * * *
18032036 TCAGGTTCTCCGACGATGCT-CGGTGATGGTGCCCC-AGTGAAGAAAAATGCAGCAACAGCACAT
767 TCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACAT
* ** * * * * * * *
18032099 GCCTGAG-CTTGCCATGTACTGCCGTAACCCTCGGTCTGGTCCGAACTTAGACTTGGAAAGAACT
831 GCCCGAGCCCAG-CATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
*
18032163 TCGTAT
895 CCGTAT
* * *
18032169 ACTTAGACTGGGAATGACCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * *
18032234 CCGGCCAAAGGGGCGGGATGCGTAAGCC-AGGGATCGGTTGGGTCCCCCTCTACGTGCTGTCAAT
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGAT
** * *
18032298 CCTGCTGCCATAACCCTCAGTTTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
130 CCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * ** * * *
18032363 AACCGATGAAACGAGCAGCCGGGTAGGCGGGCACTATGTCGGCTAGAGAGACGGGATGCGCAAGT
195 AACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
18032428 CGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTTTAC--GGC-A--CCA-G
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
*** ** * * * * * ** **
18032487 AACAT-GC---CCAA-GCCTAGC-ATGTGCTGCCGTAACCCTCGGTC-CGATCTGATCTTAGACT
325 TTTATGGCTTGTAAATTCATA-CAATG-G-TCCCTTAAGCCT---TCACG---TGAAGTTTCA-T
* ** ** * * * * * ***
18032545 GGGAATGA--ACTCTGTATGCCTA--AGTCAACCCA---T-GAAAC----GA-GCGTGCGGGCGC
380 GGCAA-GACGACTC-GT-TTTCTATTTTTC-A-CGATTTTCAAAACTTTTTACG-GTTCGAGATT
***** ****** ** * * * ** * * *
18032597 TCAGCCAGCCAGAT-GGGCGGA---AT-G-CACAAGCCGGGGATCGATCG-GGTCCCCTTCTATG
439 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA-ACTTGG-TAGA-CGTGAT--CCTTGTAT-
** ** * * ** *** * * ***
18032655 TGCTGCCGATCCTGCTACCGCAACCCTCGATCTGGTCAAATCTTAGACTC-CCTTCGCCTAAGCC
498 TTTTGTTG-GCATGC-A-CAAAAAAAT---TCAGCT-AAA----A-ACTCGAAGT-G--T-A--C
****** * *** ** ** * * * * * * *** * *
18032719 AACCGACGAAACGAGCGGGTG-GGAGGGCGGGCCCTATGTCGGCCA-GAGAGACGG-GA-TG-C-
545 AA--GATTTTGTGACCATTTGAAAAAAG-TGTCCCCATTTCAGACACTTTA-ATGGCTACTGCCA
* ** * * * ** * * ** ** * *
18032778 GCAAGCC-GT-GGATC-GATATGGT-GGT-AGGTGGGTTTAGGTGTATCTTTATATTTCTATGTG
606 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGGTGT--GAGT-TCTCGAGGTTT-GATGAG
** * * * * ** * * * * * * * *
18032838 CCA-A---TGCCATTTTTATGGCTTGTAAATTCATACAATTG-TCCCTTAAGC-CTTCACGTGAA
666 GGATAGGGGGCCA-ATATAAGG---GCCAA---GTACCA--GCACCCAT-CGCACATCATGTG-C
** ** * * *** ** * ** * *** ** * *
18032897 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA-ACTTTTTACG--GTTTAG
720 G---CA---C-ACCCCCCCCG---GC----CCCCCCGATCTCGGAACCCCAATGCCGCTGGTCAG
** ** ** * * * *** * * ** ****
18032959 GATT-T-TAAAAATTTTTTCGG-GAGGCGTTTTGGCCCCAAACTTGGTAGACATG-ATC-CTTTT
771 G-TTCTCCGACGA-TGCTCCGGCGATG-G---T-GCCCC-GACGAAG-AAAAATGCGGCACCAGC
** *** * ** ** * * *** * *** * ** * *
18033019 ATTTTTGTTGGCATGCACAAAAAAATTCAGGTAAAAACTCAAAGT--GTATAAGATTTTGTGACC
827 A--CATGCCCG-A-GC-CCAGCATGTGC-TGTCGCAACCCTCGGTCCG-GTCCGATCTT-AGA-C
** ** * **
18033082 ATTTGAAAAAATGTCCCCAT
883 -TGGGAATGAA-CTCCGTAT
* *** * * * ** * ** * *
18033102 --TTCAAACATTTTAATGGCAACTGGCAGTGA-ACCTGTAAAATCTCAAATGCTCTTTAA-GGGG
1 GCTT-AGAC-TGGGAAT-G-AACT--CCGT-ATGCC--T--AA-GTC-AACCCAC-GAAACGAGC
* * ** ** ** * *** * **
18033163 GTGTGAGATCTCGAGGTTTGATGAGATATAGGGGGCCAATATAAGGGCCAAGTACCTGCACCCAT
52 GTGCGGGCGCTC-A-----GCCG-GCCAGA-GGGG-CGGGAT--GCG-CAAG--CC-G-A-GGAT
* ** * ** * * * *
18033228 CGCACATCATGTGCGCACACCCCCCCGAT--TTCCAGAACC-CCAATGCCGCAA--GTCAGGT-T
100 CG-GC--CGGGT-C-C-C-CCTCTGCG-TGCTGCC-GATCCTGC--TGCCGCAACCCTCA-GTCT
* * * * * * * ** ** ** * **
18033287 -CTCCGA-C-GACGCGCTGGCG-ATG--GTGCC-T-CG-GTGAAGAAAAATG-CGGCACTAGCAC
153 GGTCTGATCTTA-G-ACTGG-GAATGAACT-CCGTATGCCT-AAGCCAACCGACGAAACGAGCGG
* * * ** * * * *** * ** *** **
18033342 ATGGCCGAGCCCAGCATGTAC-TGCTG-CAAACTTTTTAC-GG-TTCG--AG-ATTTTTTAAAAT
213 ACGGGCG-GGCGGGCA-CTACGT-CGGCCAGA---GAGACGGGATGCGCAAGCCGTGGAT-CGA-
**** * * * * * ** ** * * *
18033400 TTTTTTGG-AAG-GAGTTTTGGCCCCAAACTTGGTA-GACGT-GAT-CC-TTG-TATTTCTGT-T
270 TAGGGTGGTAGGTGGGTTTAGG-CAC-ATCTTCATATTTC-TACATGCCAATGCCATTT-T-TAT
* * * * * ** * *
18033457 GGCATGCACAA---A-AAAAT--TCAGCTAAAAAC-TCGAAGTGTACAAGATTT--T-G--TGAC
330 GGCTTGTA-AATTCATACAATGGTC-CCTTAAGCCTTC-ACGTG---AAG-TTTCATGGCAAGAC
* * * ***** ** * * * * ** *
18033510 CATTTG-AAAAAAGGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAAC-AAACTTGTAAA
388 GACTCGTTTTCTATTTTTCACGATTTTCA-AAACTTT--T---TAC-GG-TTCGAGA-TT-T---
* * ** * ** ** * ** * * **** *
18033572 ATCTCAAATGCTCTTTAAGG-GGGAG-TGAGTTCTCAAGGTTTG-ATGA-GGGATAAGGGGCCAA
440 -TTTAAAAT--T-TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA-GACGTGAT-CCTTG--TA
* ** * * *** ** ** **** * ****
18033633 TATAAG--GGCCAAGTTC-CAGCACCCATTGCA-C-ATCATGTGCGCACACCCCACCGACGCCCC
497 TTTTTGTTGG-C-A-TGCACA-AAAAAATT-CAGCTAAAAACT-CG-A-AGTGTA-C-AAGATTT
* ** * ** *** * * *
18033693 TGATCGTCGCAACCCT-AATACCGTCGGT-CAGGTTCTCCGACGATGCTCTGACAATGG-TGC--
552 TG-T-GAC-C-A-TTTGAAAAAAGT--GTCCCCATT-TCAGAC-A--CT-T--TAATGGCTACTG
* * * * * * ** * * *
18033753 CCCG-ATGAA---GAAAAATACGGCACCA-GCAC-ATGCGCGAGCCCAGCATGTG-CTTCTGCAA
603 CCAGCA--AACCTGTAAAAT-C-TCA-AATGCTCTTTAAG-G-G----G-GTGTGAGTTCT-CGA
*** * ** *** ** ** *
18033811 CCCTCGATCCGGTCTGATCTTAGACTGAGAATA-AA-CTCCATA-TGCCTAAGTCAACCCA-CG-
655 GGTTTGATGAGG---GA---TAGGGGGCCAATATAAGGGCCA-AGTACC--AG-C-ACCCATCGC
* * * *** * * ** ** ** ** * **** *
18033871 A-A--ACGGGCGTAC-GGTCGCTCAACCGACTAGAGGGGTGGGATGTGCAA-GCC-ATGGATCGA
709 ACATCATGTGCGCACACCCCCCCCGGCCCCCCCGA--TCTCGGAACCCCAATGCCGCTGG-TC-A
* * * ** * *** * *
18033930 TTGGGTCCCTCTCTG-TG-TGCT--GTCGATCCTGCTGCCG-C--AGCCCTCATTCCGG-ACCAA
770 ---GGT---TCTCCGACGATGCTCCGGCGATGGTGC-CCCGACGAAG--AAAAATGCGGCACC-A
* * *** * * * * * * * *** *
18033987 TCTTAGATTGGGAATGAACTCTGAATGCCTATACCAAATGACGAAACGAGCGGGCTGGCGGGTGG
825 GC--ACA-T--GCCCGAGC-C--CA-GCATGT-GC---TGTCGCAACCCTC-GG-T--CCGGT--
* ** * * ** * *
18034052 GCGGGCACTACA-TGGGCTGTGGA-T-CGATAG
871 CCGATC-TTAGACTGGG-AATGAACTCCG-TAT
* * * * * * ** * ** **** * *
18034082 GGTGGTAG-GTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAGTGCCATTTTTATG-GCTTG
1 GCT--TAGACTGGG--AATG-A-A-CTCCGTATGCCTAAGT--CA-ACCCA-CGAAACGAGCGTG
****** ** ** * * * * * * ** ** * **
18034145 TAAATTCATACA-ATGGTCCCTTA--AGC---CTTCACATG--AAGTTTCATGG-CAAG-ACGAC
55 CGGGCGC-T-CAGCCGG--CCAGAGGGGCGGGATGCGCAAGCCGAGGATC--GGCCGGGTCCCCC
** * ***** * * *** * ** * * * ** *** *
18034200 TC-GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTCAATT-TTTTT
114 TCTGCGTGCTGCCGATCCTG-CTGCCGCAAC--CCT-CAGTCT-GG--TCTGATC--TTAGACTG
* ** ** *** * ******* * * ** * *** ** **
18034263 GGAAGGAGTTTTG-GCCCCAAAATTTTTAGACGTGATC-CTCGTATTTTTGTTGGCATGCACAAA
170 GGAATGAACTCCGTATGCCTAAGCCAACCGACG-AAACGAGCGGA--CGGGCGGGCGGGCAC---
* * * * * *** ** *** * ***
18034326 AACATTCAGCTA-A-AAACTCAAAGTGTACAAGATTTTGTGA-CCATTTGAAAAATGTGTCCCCA
229 TAC-GTCGGCCAGAGAGAC-GGGA-TGCGCAAG-CCGTG-GATCGA--T--AGGGTG-GT----A
** ** ** * ** * * * *
18034388 TTTTAGACACTTTAATGGCTAC-TGGCGGCAAACCTGTAAAAT-CTCAAATG-C-TCTTTAAGGG
280 -GGT-G--GGTTT-A-GGC-ACAT--CTTCATATTTCT-ACATGC-C-AATGCCAT-TTTTATGG
** ** * * * * * *
18034449 GGTGTGAGTTCTCGAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
332 CTTGT-AAAT-TC-A----T-A-----CA-A-TGGTCC-CT-TAA--GCC---T----TCA--CG
* ** * **** * *** * ** **
18034514 TCGCACA-TTAT-GTGCGCACAG-CCCCCCGGCCCCCCGATCGTCGGAACCACAATGCTGCCGGT
369 T-G-A-AGTT-TCATG-GCA-AGACGACTC-G-TTTTCTAT--T---TTTCACGAT--TTTC-AA
** * * * *** * *** * * ** *** * *
18034576 CAGGTTCTT-CGGTGATGGAGCCTCAGTGAAGAA-AAATACGGCACCAGCACATGCCCGAGCCCA
418 -AACTTTTTACGGT--TCGAG-ATTTTTTAA-AATTTTTTCGGAAGGAG-TTTTGGCC---CCAA
* * * ** * * * * * ** ** * *
18034639 GCATGTGCT-GCCGCCACCCTGGATCATGTTCGATCTTAG-ACTG-GGAATGAACTTCGTATGGT
474 AC-T-TGGTAGACGTGATCCTTG-T-AT-TT--TTGTTGGCA-TGCACAAAAAAATTC--A-GCT
* * ** * * ** * ** * * * *
18034701 -TAGACTGCGAA-TAAAATCTATATACCTAAGTCAACCCA--TGAAACGAGCGT-GCGAGTGCTC
528 AAAAACT-CGAAGT-GTA-C-A-AGA-TTTTGT-GA-CCATTTGAAAAAAGTGTCCCCA-T-TTC
* * ** * * * *** * * * ** * * * ** * *
18034761 AGTCGGC-CAAAGGGGCGGGA-TG-C-GC-AAGCTGGGGATTGGTTAGGTCCCCCTCT-CTGTGC
583 AGAC-ACTTTAA-TGGC--TACTGCCAGCAAACCTGTAAAAT-CTCAAAT-GCTCTTTAAGGGGG
* * * **** ** * **
18034820 TGTTGATTCTACTACTGCAACCCTCGGTCCTG-TCTAATCTTAGACTAGG--AAT-GAA-CTCC-
642 TG-TGAGT-T-CT-C-G--A-----GGT-TTGAT-GAGGGATAG--GGGGCCAATATAAGGGCCA
* * ** * * ** * * * *** * ***** * *
18034879 -GTATGCTTAAGCCAACCAAGGAAACGAGCGGGCGGGCACTACGCTGGCCAGAGATACGGAT-GC
691 AGTA--C--CAG-CACCCATCG-CAC-ATCATGTGCGCAC-ACCCCCCCCGGCCCCCCCGATCTC
* ** ** * ** ** * **
18034942 GCAAGCCGTGAATCGATAGGGTGGT-ATGTGGGTT-TGGGCAC-AT-CTTTAATGGCTACTAGCA
748 GGAA-CC-CCAAT-G--CCGCTGGTCA----GGTTCTCCG-ACGATGC--T-CCGGCGA-T-GGT
* * *** * * * *** * ** **** *
18035003 GCAAACCTGTA-AAATCTCAAATGC-TCTTTAAGGCGGTGTGAGTTCTTGAGGTTTG-ATGAGGG
798 GC---CCCG-ACGAA-GAAAAATGCGGC----A-CCAG-CACA-TGCCCGAGCCCAGCAT--GTG
* ** ** * * * * * * ** **
18035065 ATAGGGGGCCAA-TATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTG-CGGACAC-CCCC
849 CT--GTCG-CAACCCT-CGGTCC-GGT-CC-G-A-TC-TT--AGA-C-TGGGAATGA-ACTCCGT
**
18035127 CG
899 AT
*** ** * * * * * **
18035129 GCCCCCGA-TCGTGG---GAAC-CCCAATG-CTGCAGGTCAGGTTCTCC-GGTAATGCTCTGATG
1 G-CTTAGACT-G-GGAATGAACTCCGTATGCCT--AAGTCA---AC-CCACGAAACGAGC-G-TG
* * ** *** * ** *** * * * * * * *
18035187 ATGGTGC-CCCGATGAAGAAAAATACGGCACAAACACATACCCGAGCCCAGCAT-GTGCTGTCGT
55 -CGG-GCGCTC-A-GCCG-GCCAGA-GGGGC---GGGATGCGCAAGCCGAGGATCG-GCCG-GGT
** * * * * * * * * **
18035250 AACCCT-TG-GTCCGGTCCAATCTTAGAATG--GGAA---TGA-ACT-CCCT-ATGCTTAGACTG
109 CCCCCTCTGCGTGCTG-CCGATCCT-G-CTGCCGCAACCCTCAGTCTGGTCTGAT-CTTAGACTG
** * * * * * *
18035305 GGAATGAACTTTGTATGCCTAAGTCAACCCACGAAATGA---G-CGTGCAGGC--GCTC-A-GTC
170 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTC
* * * * * * * * ** *
18035362 GACCAGAGGGGCAGCATGCGCAAGTCG-GAGATCGGTCGGGTCCCCTTCTACGTGCTGTCGATCC
235 GGCCAGAGAGACGGGATGCGCAAGCCGTG-GATCGATAGGG-----TGGTA-G-G-TG--GGT--
* * * * * ** ** * * * *
18035426 TGT-TGCCCTATCCCTCGGTCCGGTCTGATCTTACATTGGGAAT-TAACTTTGTATGCCTAAGCC
287 T-TAGGCAC-AT--CT---T-C-ATAT-TTC-TACA-TGCCAATGCCA-TTTTTATGGCT-TG-T
*** * * * ***** * ***
18035489 AACCGACGAAACGAACGGGCAGACGGGCGGGCACTACACCG-GCCAGAGAGACGGGATGCGCAAG
337 AA-ATTC-ATAC-AATGGTC---C-CTTAAGC-CTTCA-CGTG--A-AGTTTC---ATG-GCAA-
* * * * *
18035553 CCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGC-ACATCTTCA-TATTTCTGCATGCCAATGCC
385 -----GA-CG--A--CT--C--GT---TTT---CTA-TTTTTCACGATTT-T-CA----AA--AC
* * ** * *
18035616 ATTTTTATGGCTT-GTA-AATTCATACAATGGTCCCTTAAGCCTTC--ACGTGAAGTTTCATGGC
421 -TTTTTACGG-TTCG-AGATTTTTTAAAAT--T---TT-----TTCGGAAG-G-AGTTT--TGGC
** ** * * * ****
18035677 AAGACGACTCATTTTCTATTTTTA-A--TGAT-TTTGAAACTTTTGCGGTTTGAG-ATTTTTTAA
469 ----C--C-CA--AAC--TTGGTAGACGTGATCCTTG-TA-TTTT--TG-TTG-GCA-TGCACAA
** *** * * ** * *
18035737 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTG-GCG
516 AA---------AA--A--TTCAGCTAAAAAC-TCG--AA-GTG-TACAAG-ATTT-TG-TGACCA
*** * ** ** *** * * * * ** ** * **
18035801 TGCACAAAAAAATGGAGCTAAAAACTTGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
560 T-TTGAAAAAAGT-GTCCCCATTTC-AGACACTTTA-ATG-GCTACTG-CCA---G-CAAACCTG
** * **
18035865 TCCCAATTTCAAACACT-TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAG
615 T-AAAATCTCAAATGCTCTT------------------------------T---A--------AG
*
18035929 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCTAGTACCAGCACC
638 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * * * * *
18035994 CATCGCACATCATGTGCACACACCCCCTCTGGCCCCCCCGATCGCTGGAACCCTAATGCCACCGA
703 CATCGCACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATCTC-GGAACCCCAATGCCGCTGG
* * * * * * *
18036059 TCAAGTTCTCCGACGA---T-----G-T--TACCCCGGCAAAGAAAAATACGGCACCAGCATAAG
767 TCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* ** * *
18036113 CCAGAGCATAGCATGTGCTGCCGCAA----C---CC--TCAG-TC-----C---G-AT---CT--
832 CCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
18036154 G-AT
897 GTAT
* * *
18036157 -CTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCACAAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
18036221 CCGGCTAGAGGGGCGGGATGCACAAGCCGGGGATCGGCTGGGTCCACCTCTGCATCCTGTCGATC
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
** ** ** * * *
18036286 CAACTGTAGCAACTTTCGGTCCGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCA
131 CTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * *
18036351 ACTGACGAAACGA----ACGGGCGGGCGGGCACTACGTAAGCCAGAGAGATGGGATGTGCAAGCC
196 ACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
***
18036412 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
*
18036477 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGAC
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
18036542 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTCTTCGA
391 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* *
18036607 AAGGAGTTTTGGCCCCAAA-TTGGGTAG-CGTGGTCCTTGTATTTTTCTTGGCATGCACAAAAAA
456 AAGGAGTTTTGGCCCCAAACTT-GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
18036670 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCAATTTCAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * **
18036735 ACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTTTGTT
585 ACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
18036800 CTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGTCAAGTTCCAGCACCCATCGCACATCA
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* ** * *
18036865 TGTGCGCTCA--CCCCCCGGTACCCCTGATCACCGGAACCCCAATGCCG-TCGGTCAGGTTCTCC
715 TGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCT-GGTCAGGTTCTCC
* ** *
18036927 GATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCTCGAGCCCAG
778 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * ** * * *
18036992 TATGTGCTGCCGTAACCCTCAATCTGGTCTGATCTTAGGCTGGGAATGAACTCCGTAT
843 CATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
18037050 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGCTCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * ** * *
18037115 CCAGCAAGAGGGGCGGGATGTGAAAGTCGGGGATCGATCGGGTCCCCCTCTGTGTGCTACCGATC
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* * **
18037180 CTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTACACCTAAGCCA
131 CTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * ** * * *
18037245 TCCGACGGAATGAGCGGGCAGGAAGGCGGGCCCTATGCCGGCCAGAGAGACGGGATGCGCAAGCC
196 ACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
*
18037310 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGA-GCCAATGCCATT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-CATGCCAATGCCATT
* * *
18037374 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACATGAAGTTTAATGGCAAGACGA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** * * *
18037439 CTCGTTTTCTATTTTTCATGATTTTTGAAATTTTTTACGGTTCGATATTTTTTAAAATTTTTTTG
390 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
* * * * *
18037504 GAAGGATTTTTGGCCCCAAACTTGATAGACATAATCCTTTTATTTTTGTTGGCATGCACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
18037569 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCAATTTCAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
18037634 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTT
585 ACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
18037699 CTCGAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
18037764 TGTGCGCACA-CCCCCCCGGCCCCCCC-ATCGCCAGAACCCCAATGCTGCCGGTCAGGTTCTCCG
715 TGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCTGGTCAGGTTCTCCG
** * ** * * * *
18037827 GTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGTGACAACAGCACATGCCCGAGCCCAGT
779 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* *
18037892 ATGTGCTGTTGTAACCCTCGGTCC-G---G-TC-----C---------A------AT
844 ATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
18037924 -CTTAGACTGGGAGTGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
18037988 TCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGGTCGAGTCCCCCTTTGCGTGCTGCCAATC
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
** ** * * * * **
18038053 CTATTGTTGTAACCCTTAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 CTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
18038118 ACCGACGAAATGAGCGGGCGGGCGAGCGGGTGGGCGGGGCAGGCCTTACGTCGGCCAGAGAAACG
196 ACCGACG-AA--A-CGAGC--G-GA-CGGGCGGGC-GGGCA---C-TACGTCGGCCAGAGAGACG
* * ***
18038183 AGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGGT
248 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAT
18038248 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
313 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * * *
18038313 ATGGCAAGATGACTCGTTTTC-AATTTTCACGATTTTCAAAACTTTTTACGGTTGGGGATTTTTC
378 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTT
* * * *
18038377 AAAATTTTTTCGAAAGGATTTTTTGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGC
443 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * *
18038442 ATGCACAAAAAAATTCAACTAAAAACTCAAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTG
508 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
** * * *
18038507 TCCCCATTTCAGACACTTTACCGGCCACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAAG
573 TCCCCATTTCAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * * * *
18038572 GGGGAGTGACTTCTCGAGGTTTTATGAGGCATAGGGGGCCAATATAAGGACCAAGTACCAGCACC
638 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * ** ** * *
18038637 CTTCGCACATCATGTGCGC-GA-CCCCCCCGG-CCCCTCGATCGTCAAAACCAAAATGTC-ATCG
703 CATCGCACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCT-G
* * ** ** * ** *
18038698 GTGAGGTTCTCTGGTGATGCTCCGGTAATGGTG-CCCTAGCGAAGAAAAATATGACACCAGCACA
766 GTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACA
* *
18038762 TGCCCGAGCCCAACATGTGCTGTCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACT
830 TGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCC-G---G-TC-----C-------G----
* *
18038827 CTATATGCTTAGACTGGGAATGAACTCTGGAT
874 ----AT-CTTAGACTGGGAATGAACTCCGTAT
** * * * *
18038859 GCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAACGATCGTGCAGGCGCTCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * ** * * *
18038924 CCGGCCAGAGGGGCGGGTTACGCAAACTGAGGATCGACTGGGTCTCCCTCTATGTACCGCTGATC
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* * *
18038989 CTGCTACCGTAACCCTCAGTCTGGT-TCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCC
131 CTGCTGCCGCAACCCTCAGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
18039053 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCCCTACGCCAGCCAGAGAGACGGGATGCGC
195 AACCGACGAAACGAGCGGACGGGCGGGCGGGCA----CTACGTCGGCCAGAGAGACGGGATGCGC
* * * ***
18039118 AAGCCGTGGATCAATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGC
256 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* * *
18039183 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTCTAATGGCAAG
321 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
** * *
18039248 ACGACTCGTTTTCTATTTTTCATAATTTTGAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTT
386 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * * * ** *
18039313 TTTGAAAGGAGTTTTAGCCCCAAACATGCAAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
451 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
18039378 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18039443 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTG
581 TCAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
18039508 AGTTCTCGAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
18039573 ATCATGTGCACACA-CCCCCCTGGCCCCCTCGATCGCCAGAACCCCAATGCTG-TCGGTCAGGTT
711 ATCATGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCT-GGTCAGGTT
* * * * *
18039636 CTCCGACGATGCTCCGGTGATAGTGCCCCGATGAAGAAAAATACGACACCAGCACATGCCCGAGC
774 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* *
18039701 CTAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT-C----
839 CCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
18039758 -C---G--T----ATG-----C-----CC-AAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAT
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * *
18039802 CCGACCAGAGCGGTGGGATGCGCAAGCTGGGGATCGGCCGGGTCCGCCTTTGCATGCTACCCATC
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* * **
18039867 TTGCTGCCACAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 CTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
18039932 ACCGACAAAACGAGCGGACGGGCGGGCGGGCACTATGCCGACCAGCGAGACGGGATGCACAAGCC
196 ACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * * ***
18039997 GTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTAATATTTTTGTGTGCCAATGCCATTT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
* * * *
18040062 TTATGGCTTGTAAATTCATTCAATGGTCCCATAGGCCTTCACGTGAAGTTTCATGGCAAGACAAC
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** *
18040127 TCGTCTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
391 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* * * * *
18040192 TAGGATTTTTTGCCCCAAAATTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAA
456 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
18040257 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
521 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
** *
18040322 CACTTTAATGGCTACTAACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTC
586 CACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
18040387 TAGAGGTTTGATGAGGGATAGGGGG-CAACTATAAGGCCCAAGTACCAGCACCCATCGCACATCA
651 TCGAGGTTTGATGAGGGATAGGGGGCCAA-TATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
18040451 TGTGCGCACA-CCCCCCCGGCCCCCCCGATCGCCAGAACCCCAATG-C-C--GTCA----AT-C-
715 TGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCTGGTCAGGTTCTCCG
* * * *
18040505 AAG-TTCTCCGGCGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGAACATGCCCGAGCCCAGC
779 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
18040569 ATGTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
844 ATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
18040626 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACCAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
18040691 CCGGCCAGAGGAGCAGGATGCGTAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATC
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * ** *
18040756 TTGCTGTCACAACCCTCGGTCCAGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 CTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * * * * *
18040821 ACCGACGAAATGA---G-CGGGTTGGCGGGCACGACGCCGACCAAAGAGATGGGATGCGCAAGCC
196 ACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* *
18040882 GTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAATT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC-ATT
* * *
18040947 TTT-TGGCTTGTAAATTCTTACAATGGTCCCTTAAGCCTACACGTGAAGTTTCATGGCAAGACAA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** *
18041011 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-GGGTTTC-AGGATTTTTTAAAATTTTTT
390 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGG-TTCGA-GATTTTTTAAAATTTTTT
* *
18041074 CGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
453 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
18041139 AAATTCAGCTAAAAACACAAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTC
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
18041204 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
583 AGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
18041269 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATGTAAGGG-CAAGTACCAGCACCCATGGCACAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
18041333 CATGTGTGCACA-CCTCCCCAGCCCCCCCGATCGTCGGAACCCAAATGCCAC----C-GG---T-
713 CATGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCTGGTCAGGTTCTC
* * * * * * *
18041388 C-A-G-TTCTCCGGCGAAGATGCCCCGGCAAAGAAAAATGTGGCACCAGCACATGCCAGAGCCCA
777 CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * *
18041450 GCATGTGCTGCCGCAACCTTCGCTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTAT
842 GCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
18041509 GCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCTACGAAATGAGCGTGCGGGCGTTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
18041574 CCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGG-------C--C---C--CC-A--
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
*
18041622 ---CT---------C-CA-----GTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
131 CTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * *
18041669 ACCGACGAAATGA---G-CGGGCGGGCGGGAAATATGCCGACCAAAGAGATGGGATGCGCAAGCC
196 ACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
18041730 GTGGATCGATAGGTTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTACGTGCCAATGCCAATT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC-ATT
* * * *
18041795 TTT-TGGC-TGTAAATTCTTACAATGGTCCCTTAAGCCTACACGTGAAGTTTCATGGCAAGGCAA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** **
18041858 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGGGGTTCGAGATTTTTTAAAATTTTTTCG
390 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
* *
18041923 GAAGGAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTTTTATTTTTGTTGGCATGCACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
18041988 ATTCAGCTAAAAACACGAAGTGTACAATATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
18042053 ACACTTTAATGGCTATTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
585 ACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
18042118 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATGGCACATCA
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
18042183 TATGCGCACACCCTCCCCGGCCCCCCCGATTGTCGGAACCCCAATCCCG-TCGATCAGGTTTTCC
715 TGTGCGCACACCCCCCCCGGCCCCCCCGA-TCTCGGAACCCCAATGCCGCT-GGTCAGGTTCTCC
* * * ** * *
18042247 -AGGAATGCTCCGACAATGGTGCCCCGGGGAAGACAAATGCAGCACCAGCACAT-CCCGAGCCCA
778 GACG-ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
18042310 GCATGTGCTGCCGTAACCCTCGGTCCGAG-CCGATCATAGACTGGGAATGAACTTCGTAT
842 GCATGTGCTGTCGCAACCCTCGGTCCG-GTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * * *
18042369 GCTTAAACTGGGAAAGAACTCCATATGCCTAAGTCAATCCATGAAACGAGTGTACGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** * *
18042434 CCGGCCAGAGCGGTGGGATGCGTAAGCCGGGGATCGGTTGGGTCCCCCCTCTGCGTCCTGTCGAT
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGT-CCCCCTCTGCGTGCTGCCGAT
* ** * * *
18042499 CCTACTGCCATAACCCTCGGTCTGATCTGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCC
130 CCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * *
18042564 AACCGATGAAACAAGCGGGTGGGCGGGCGGGCGGGCAATACGTCGGTCAGAGAGATGGGATGTGC
195 AACCGACGAAACGAGC----GGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* *
18042629 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGC
256 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
*
18042694 CATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
321 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** *** * *
18042759 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTTGTTCAAGATTTTTTAAAATTTG
386 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * * * *
18042824 TTCAGAAGTAGTTTTGGCCCCAAACTTGGTAGGCGTGATGCTTGTATTTTTGTTGGCACGCACAA
451 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
18042889 AAAAATTCAGCTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
18042954 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
581 TCAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18043019 AGTTCTTGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** *
18043083 ATCATGTGCGCACA-CCCCCCCGGCCCCCCCGATCGTTAGAACCCCAATGCCG-TCGATCAGGTT
711 ATCATGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCT-GGTCAGGTT
* * * * *
18043146 CTCTGGCGATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
774 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* *
18043211 CTAGCATGTGCTGCCGCAACCCTCGGTCC-G---G----T---CT--G-AT---CT---TA-
839 CCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
18043252 ----A-ACTGGGAATGAGCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGTGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * * * ** *
18043312 TCGGCCAGAAGGGCGAGATGCATAAGTCGGGGATTGATCGGGT-CCCCTCTGCGTGCTGCCAATC
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
** * * * *
18043376 CTGCTGCCGCAACCCTTGGTCCGGTTTGATCTTAGACTGGGAATGAACTTCGTATGCGTAAGCCA
131 CTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
18043441 ACCGACGAAATGAGTGTG-CGGGCGGCCAGGAGGGTACTACGCCGGCCAGAAAGACGGGATGCGC
196 ACCGACGAAACGAGCG-GACGGGC-G---GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* ** **
18043505 AAGCCGTGGATCGATAGGGTGGTAGGTGGATTTACACACATCTTCATATTTC-AGTGTGCCAATG
256 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-CATGCCAATG
*
18043569 CCATTTTTATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
320 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* ** *
18043634 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGAGATTTTTTAAAATTT
385 GACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
* *
18043699 TTTCAGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-A
450 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * * *
18043763 AAAAACATTCAACTAAAAACACGAAGTGTACAAGATTTTGTGACCCTTTGAAAAAAATGTCCCCA
515 AAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * *
18043828 TTTCAGACACTTTAATGGCTATTGGCAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTG
579 TTTCAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * * *
18043893 TGAGTTTTTGAGGATTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATTGC
644 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * *
18043958 ACACCATGTGCGTACACCCCCCACGGCCCCCCCGATCACCGGAACCCCATTACCG-TCGGTCAGG
709 ACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCT-GGTCAGG
*
18044022 TTCT-C--CGA--------CGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGCCCGA
772 TTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * * * * *
18044076 GCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCTGGTCTTAGACTAGAAATGAACTCCATAT
837 GCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
18044140 GCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACTAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * *
18044205 CCGGCCAGAGGGGTAGGACGCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTGCGTGGTGTCGATC
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* * ** *
18044270 CTACTGTCGCAACCCTCAGTCCAGT-TCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCC
131 CTGCTGCCGCAACCCTCAGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
18044334 AACCGAAG-AA--A-C-GA---GCGGGCGGGCACGACGCCGGCCAGAGAGACGGGATGCGTAAGC
195 AACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
18044391 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATTTTCATATTTTTTCGTGCCAATGCCATT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
* * * *
18044456 TTTATGGCTTCTAGATTCATACAATCGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
** *
18044521 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCG
390 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
* * * * * * *
18044586 AAAGGATTTTTGGCCCCAAACATGGTGGACATGATCCTTGTATTTTTGATAGCATGCACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
18044651 ATTCAGCTCAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
18044716 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-TGAGTT
585 ACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* **
18044780 CTCGAGGTTTGATGTGGGATAGGGGGCCAATATAA-GAACAAGTACCAGCACCCATCGCACATCA
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
18044844 TGTGCG--CA-CCCCCCCGACCCCCTCGAT-TGCCGGAACCCTAATACCGCCGGTCAGGTTCT-C
715 TGTGCGCACACCCCCCCCGGCCCCCCCGATCT--CGGAACCCCAATGCCGCTGGTCAGGTTCTCC
* * * *
18044904 --CGA--------CGATGGTGCCCTGGCGAAGAAAAATGTGGCACCAGCACATGCCCGGGCCCAG
778 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
** * * *
18044959 CATGTGCTACCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTAT
843 CATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
18045017 GCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** *** * ** **
18045082 CCGGCCAGAGGGGCGGGATGTGCAATCCGGGGATCGATCTTTTCCCCATCTATGTGCTATCGATC
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
18045147 TTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
131 CTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
18045212 ATCGATGAAACGAGCGGCCGAGCGGGCGGGCGAGCACTAC-ACAGGCCAGAGAGACGGGATGCGC
196 ACCGACGAAACGAGC-G--GA-CGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGC
* * *
18045276 AAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGC
256 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
*
18045341 CAATTTTT-T-GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAA
321 C-ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * * *
18045404 GACGACTCGTTTTTTATTTTTCACGAATTTT-GAAACCTTTTGCAGTTCAAGA-TTTTTAAAATT
385 GACGACTCGTTTTCTATTTTTCACG-ATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* * ** *
18045467 TTTTCGGAAGGCGTTTTGGCACCAAACTTGGTAGACACGATCCTCGTATTTTTGTTGGCATGCAC
449 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
18045532 AAAAAAATTCAACTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCGCA
514 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
**
18045597 TTTCAGACACTTTAATGGCTACTTACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
579 TTTCAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * * * * *
18045662 TGAGTTCTCAAGGTTTGATGAGGGACATGGGGCGAATATAAGGGACAAGTACCAGCACCCTTTGC
644 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
18045727 ACATCATGTGCGCACACCCTCCCCGG-CCCCCCAATCGTCGGAACCCCAATGCCGCTGGTCAGGT
709 ACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCTGGTCAGGT
* ** * *
18045791 TCTCCTG-TGATGCTCCGGCGATGGTGTGAGTACTCAAGGTTTGATGAGGGATAGGGGGCCAATA
773 TCTCC-GACGATGCTCCGGCGAT-G-GT--G--C-C-----CCGACGA-AGA-A-------AA-A
* * * * * * * * **
18045855 TAAG-GGC-CAAGTAC-TAGCACCCATGGCACATCATGTGC-G-CACACCCCCCGG-CC-CCCCG
815 T--GCGGCACCAGCACAT-GC-CCGA--GCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCG
** **** * *
18045913 ATCGTCGGAACCCCTAATG-CCATCGGTCA-
874 ATC-TTAG-ACTGGGAATGAAC-TCCGT-AT
* ** * * * * ** * *** **
18045942 GGTT---CTCCG-ATGATGCTCCG-GTG-AT-GGT--ACCCTGGTGAA-GAAAAAT--TTG-G--
1 GCTTAGACTGGGAATGA-ACTCCGTATGCCTAAGTCAACCCACG-AAACG-AGCGTGCGGGCGCT
* * * * ** * * * ** * *
18045992 CA-CCAG-TACA--TGCCCGA-GC-CCAG-C-ATG-TGCTGCC--GTAACCCTC-G-GTCCGGTC
63 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGAT-CGGCCGGGTCCCCCTCTGCGTGCTG-C
** * * * * *
18046044 TAATCTTAGACTG--GGAA---TGA-ACT--TC-GTATGCTTACACTGGGAATGAACTCCGTATG
126 CGATCCT-G-CTGCCGCAACCCTCAGTCTGGTCTG-AT-CTTAGACTGGGAATGAACTCCGTATG
* * * * *
18046100 CCTAAGTCAACCCATGAAACGAGCGTG-CGGGC--GC--TCA--AC--CGGCCAGAGAGGCGGGA
187 CCTAAGCCAACCGACGAAACGAGCG-GACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGA
* * * * ** *** * * * * *
18046156 TGAGTAAGCCGGGGATCGGCT-GGGTCCTCCTCTGCGTCCT-GTCGATCCTGCTGCTGCA-ACCT
251 TGCGCAAGCCGTGGATC-GATAGGGTGGT-AGGTGGGT-TTAGGC-A-CAT-CT--T-CATA-TT
* ** * * * ** ** * * * **
18046218 T-TA-GT-CCGGT-CTGA-TCTTA--GATTGGGAATGAACT-CTAT-ATGCC-TAAGCCAACCGA
306 TCTACATGCCAATGC-CATTTTTATGGCTTGTAAATTCA-TACAATGGTCCCTTAAGCC-TTC-A
** *** * * ** * ** ** ** *
18046273 CGAAACGAGCGGGCACTACGCCGACCAGA-GAGTCGGGATGCGTAAGTCGTGGATCGATAGGGTG
367 CGTGA--AG-TTTCA-T--G--G-CAAGACGACTC-GTTTTC-T-A-TTTTTCA-CGAT--TTTC
** ** * * * * * * * * * **
18046337 GTAGGTGGGTTTA-GGTAC--G---TCTTCATATTTCTACATGCCAACGGCATTTTTATGGCTTG
416 AAAACT--TTTTACGGTTCGAGATTTTTTAAAATTTTTTC--G-GAA-GG-A-GTTT-TGGC-CC
* ** * * * ** * **
18046396 TAAA-TTCATACA-ATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTTTTC
471 CAAACTTGGTAGACGTGAT-CCTT--G---T-A-TT----TTTGTTGGCATG-C-A--C----AA
* *** * ** ** * * * ** **
18046459 TATTTTTCATGATTTTCGAAACTTTTTACG-GTTCAAGATTTT-TTAAAATTTTTTTGAAAGGAG
516 AAAAATTCA-G---CTAAAAAC--TCGAAGTGTACAAGATTTTGTGACCA----TTTGAAAAAAG
* * * * * * ** *
18046522 TTTTGGCCCCAAACTTGGTGGACATGAGC-CTTGTATTTTTGTTGGCTTG-CA-CAAAACAAT-T
571 ---TGTCCCC--A-TT--T---CA-GA-CACTT-TA--ATGGCT-AC-TGCCAGCAAACCTGTAA
* * ** * ** * ** ** *
18046583 CAGCT-AAAAACTC--GAA----GTGT-A---CAAGA-TTTTG-TGA-CCAT---TTG--AA-AA
618 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* ** ** * ** * **** * ****
18046628 AAGTGTCCCCGTTTCAG-ACAC-T-TTA-ATGGC-TACTG-GCA-A--GAAACCTG----TAAAA
683 AAG-GGCCAAGTACCAGCACCCATCGCACAT--CAT-GTGCGCACACCCCCCCCGGCCCCCCCGA
* ** ** * * * * * * **
18046680 TCTC-AAATGCTCTTTAA-GGGGGT-GTGA-GTTCT-TGAGGTTTGATGAGG-GATAGG-G----
744 TCTCGGAA--C-C-CCAATGCCGCTGGTCAGGTTCTCCGACG-ATGCTCCGGCGAT-GGTGCCCC
* * * * ** * * *** * * *** * ** *
18046734 GGCCAATATAAGGGCCAAGTACCAGCAC---CCATCGCACATCATGTGCGCACACCCCCCCCCGG
803 GACGAAGAAAAATG-C-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-GCAACCCTCGG
** * *
18046796 -CCCCTCCGATC---G--T-CG---GAAC-CC-AAT
865 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* ** * ** * * * * *** * *
18046820 GGC---GTC-GGTCAGGTTCTCTG-ACG-AT-GGTGC--CCCGACG-AA-GAAAAATGC-GAC-A
1 -GCTTAGACTGGGAATGAACTCCGTATGCCTAAGT-CAACCC-ACGAAACG-AGCGTGCGGGCGC
* * ** * * ** *
18046872 T--G-C-G-CACA--TGCCCGA-GCCCAA--C-ATGTGCTC--CC--GTAACCCTC-G-AT-CTG
62 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-G-GATCGGCCGGGTCCCCCTCTGCGTGCTG
* * * * * * * *
18046919 ATCCGATCTTAGATTG--GGAA---TGA-ACT-CTAT-ATGCTTAGACTGGGAATGAACTCTGTA
125 --CCGATCCT-G-CTGCCGCAACCCTCAGTCTGGTCTGAT-CTTAGACTGGGAATGAACTCCGTA
* * * * * *
18046976 TGCCTAAGTCAACCCACGAAACGA---G-CGTGCGGGC--GCTC-A-GCCGGCCAGA-AGGGCGG
185 TGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGA-GACGG
* * * * ** *** * * **** *
18047032 GATGCGCAAGTCGGGGATCGGTTGGGTCCCTCTCTGCGTGTTA--C-CGATCCTGC-TGCCGCAA
249 GATGCGCAAGCCGTGGATCGATAGGGT-GGTAGGTGGGT-TTAGGCAC-AT-CTTCATATTTCTA
* ** * * ** ** * **
18047093 CCCTCGGTCCGGT-CCGA-TCTTA-GAC-TGGGAATAAACTCCATAT-G--CC-TAAGCCAAC-C
310 -CAT--G-CCAATGCC-ATTTTTATGGCTTGTAAATTCA-TACA-ATGGTCCCTTAAGCCTTCAC
** * * * * ** * ***** *** * *
18047149 GATGAAACG-AGCGGACGGGCGAG-CGGGCACCACGCTGGCCA-GAGAGACGGGATGCGAAAGCT
368 G-TG-AA-GTTTC--A-TGGCAAGAC--G-A-CTCGTTTTCTATTTTTCACGATTTTC-AAAACT
** * * * ** ** * * **
18047211 GTAGATCGATCGGGTGGTAG-TTGGGTTTAGGCACATCTTC---A-TA-TTTCTGTGTGCCAATG
422 -T---TTTA-CGGTTCG-AGATT--TTTTA-AAATTTTTTCGGAAGGAGTTT-TG-GCCCCAA--
* ** * * * *** * *** * * * ** **
18047270 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGC-A
474 AC-TTGGTA-GAC--GT-GA-TCCTTGTAT-TTTTGTT-GGCATGCACAAAAAAATTCA--GCTA
* * * * * ** * * *** ** ***
18047334 AGACGACTCG-A-T-TTC--TATTTT-TTACGATTT-TCAAAACTTTTTACGGTTCGAGATTTTT
529 A-A-AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTT
*** * ** * * ***** * ** * * *
18047392 TAAAATTTTTTC-GGAAG--GA-GT-TTTGGCCCCAAA----C-TT-AGCAGATGTGA-TCCTTG
591 T--AATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
** ** * ** * ** * * ** * **
18047445 TATTTTTG-T-TCGCAT-----GCACAA-A-AAAAGTC-AGCTAAAAACTCGAAGT-GTACAAGA
654 -AGGTTTGATGAGGGATAGGGGGC-CAATATAAGGGCCAAG-TACCAGCACCCA-TCGCACATCA
* * *** ** *** * * * *** ** **
18047499 TTTTGTG-AC-CATTTCCAAGAAAG-TGTCCCTATTTCAGACACTTTAATGGCTACTAGCAACAA
715 -TGTGCGCACAC-CCCCCCCG---GCCCCCCCGATCTCGGA-ACCCCAAT-GCCGCT-G-GTC--
* ** * * ** * * * * * * ** * *
18047561 ACCTGTAAAATCTCAAATG-TTCTTTAAGGTGGTGTGAGTTCTCAAGCTTTGATGAGGGAAAGGA
769 A--GGT----TCTCCGACGATGC--TCCGGCGATG-GTG-CCCCGA-C---GA--AGAAAAATGC
** * * * * * * *
18047625 GG--CCAATATAAGGGCCAAGTACCAACACCCATCGAACGTCATGTGCGCACACCC-C--CCCGG
818 GGCACCAGCA-CATGCCCGAG--CC--CA-GCAT-G--TG-C-TGT-CGCA-ACCCTCGGTCCGG
** * ** **
18047685 -CC-CCCCT-GA-T-GTCA-GAAC-CCCAAT
870 TCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * ***
18047709 GTCGTCGA-TCAGG--T--TCTCCGGTGATGCTCTGACGATGGTGC--CCCGGCG-AA-GAAAAA
1 G-CTTAGACT-GGGAATGAACTCC-GT-ATGC-CT-A--A--GT-CAACCC-ACGAAACG-AGCG
* * ** * * * *
18047765 TGC-AGCAC-CAGCACTTCC--A----C--GA-GCTC-AG-C-ATG-TGCTGCC--G-CAACCCT
53 TGCGGGCGCTCAGC-CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGAT-CGGCCGGGTC-CCCCT
* * * * * * * * * *
18047812 -TG-GTCCGGTCCGATCTTAGACTG--GGAA---TGA-ACTCCGTATG--GTTAGACAGGGAATG
115 CTGCGTGCTG-CCGATCCT-G-CTGCCGCAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATG
* * * * * *
18047867 AACTCCGTATGCCTAAGTCAACC-ACGAAACGA---G-TGTGC-GG-GTGCTC-A-GCCGGCCAG
176 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAG
** ** * ** * * *
18047923 A-AGGGTGGGATGCATAAGTC-TGGGATCGACT-GGGTCCCCCTCTGTGTGCTGCCGATCCT-GC
241 AGA-GACGGGATGCGCAAGCCGT-GGATCGA-TAGGGT---GGT-AG-GTG--G--G-T-TTAGG
* * * ** * *** * * *
18047984 CACCCCAACCCTCGGTTCGGTCCGATCT-TAGACTGGGAATG-AACTCCGTATGCCTAAGTGAA-
292 CA---C-A---TC--TTC-AT---ATTTCTACA-TGCCAATGCCA-TTTTTATGGCT-TGTAAAT
** * *** * ** * * *** *
18048046 -CCGACGAAACGAG-CGGGTGAGCGGTCGAGCGGGCAGGCACTATGCCGGCCAGAGA-GA-TGGG
341 TCATAC--AATG-GTCCCTTAAGCCTTC-A-CGTGAAGTTTC-AT---GG-CA-AGACGACT-CG
*** * *** * ** *** ** * * * * *
18048107 ATGCGCAAGCCATGCATCGATAGGGTGGTAGGTGGGTTTA-GG--C-ACA--TCTTCATATTTCA
394 -TTTTCTA-TTTTTCA-CGAT--TTTCAAAACT--TTTTACGGTTCGAGATTTTTTAAAATTT--
* * ** * * * *** ** * * * *
18048166 GCATGCCCATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCCTTAAGCCTTCACGTAAA
450 --TTTCGGAAG-GA-GTTT-TGGC-CCCAAA--C-T----TGGTAGACGTGATCCTT---GT-AT
* ** * *** *** * ** **** * **
18048230 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGAT
498 TTTTGTTGGCATG-C-A--C----AAAAAAATTCA-G---CTAAAAACTCGAAGT-GTACAAGAT
* * ** * ** * * * ***
18048295 TTTTTAAAATTATTTCGGAAGGAGTTTTGGCCCTAATCTTTGTAGACGTGATCCTTGT-ATTTTT
550 TTTGT--GACCATTT-GAAAAAAG---TGTCCC-CA--TTT-CAGAC---A--CTT-TAATGGCT
** * * * * ** * * ****
18048359 TTTGGCAAGCACAAAAGATTCAGCTAAAAACTTGAA-G-TGTATAAGATTTTGTGA---C-C-A-
599 ACT-GCCAG--C--AA-A-CCTG-TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
** * * **** * * * * * * ** * * *
18048416 -TTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGG-CTACTGGCAGCAAACC-T-GTA-A-A
656 GTTTG-ATGAGGGAT----A-GGGGGCCAATATAAGGGCCAAGTACCAGC-ACCCATCGCACATC
* * * ****** ******* * **** ** ** * *
18048475 ATCT-C-AAAAGCTCTTTAAGGGGGTGTAAGTTCTC--AA--GTTTTGAAGAGGGAT-AGGGT-G
714 ATGTGCGCACA-C-CCCCCCCGGCCCCCCCGATCTCGGAACCCCAATGCCGCTGG-TCAGGTTCT
* ** * * * * * * ** ** * *
18048532 CC-A--AT-ATAAGGGCCA-AGTACCAACACCCATCGCA-CATCATGCGTGCACACCCCCCAGGC
776 CCGACGATGCT-CCGGCGATGGT-GC--C-CCGA-CGAAGAAAAATGCG-GCAC-CAGCACATGC
* * ** * * * * *
18048591 CC---CCCCG-AT-CGCTG--G-AACCC-CAATGCC-G-CCGGTC--AGGTTCTCCGTAATGCAG
833 CCGAGCCCAGCATGTGCTGTCGCAACCCTCGGT-CCGGTCCGATCTTA-G-ACT-GGGAATG-AA
* *
18048643 CACCAGCTCGT
893 CTCC-G-T-AT
** * * * * * ** * * * ** *
18048654 GCCCGAGCCCAGCATGTG-CTGCCACAACCTTCGGTCT-AGTTTGATCTTAGACTGAAAACGAAC
1 G-CTTAG---A-C-TGGGAATG-AAC-TCCGTATGCCTAAG--TCAAC--CCAC-G-AAACGAGC
* *** * * * ** ** * * * *
18048717 -TCCGTATGCTTAGACTGG-CA-ATGAACTCTGATGC-CTAAGTCAACCCATGAAACGAG-CGTG
52 GTGCGGGCGCTCAG-CCGGCCAGAGGGGC-GGGATGCGC-AAG----CCGA-GGATCG-GCCGGG
*** * *** ** * * ***
18048777 -CGGGCACT-CAGT-C-GACCAGA-GGGGC-GGAGCAAGCCAGGGATC-GGCTGGGTC-CCCCTC
108 TCCCCCTCTGC-GTGCTG-CC-GATCCTGCTGCCGCAA-CC----CTCAGTCT-GGTCTGATCT-
* ** ** * ** ** * ** * * ** * *
18048834 TACGTGCTGCCAGACCAGCTACCGTAACCCTTGGTCTGATTCGATCTTAGACTGGGAATGAAC-T
163 TA-G-ACTGGGA-ATGAACT-CCGTATGCCTAAG-C-CAACCGA-C-GAAAC---GAGCGGACGG
* * * * * * * * ***
18048898 CCGTATGCCTAAGCCAACTGATGAAACGAGCGGGCAGATG-GGCGGG-TGGGCACTACGTCGGCC
217 GCG---GGC--GGGC-AC---T---ACG-TCGGCCAGA-GAGACGGGATGCGCAAGCCGT-GG--
** * *
18048961 AGAGAGACGGGATGCGCAAGCCGTGGATCGGTAGGGTGGTAGGTGGGTTTAATCACATCTTCATA
265 ATCGATA-GGG-TG-G-TAG--GT-G---GGT----T--TA----GG------CACATCTTCATA
* *
18049026 TTTCTGCATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
304 TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* *
18049091 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCG
369 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCG
* * *
18049156 GGATTTTTTAAACTTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
434 AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * *
18049221 TTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCAAAATGTACAAGATTTTGTGACCATTTG
499 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * * *
18049286 AAAAAAGTGTCCCTATTTCAGGCACTTTAATAGCTACTGTCAGCAAACCTGTAAAATCTCAAATG
564 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATG
* * **
18049351 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGACATGGGGTGAATATAAGGGCCAAGT
629 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * * *
18049416 ACTAGCACCCTTTGCACATCATGTGCGCACACCCTCCCCAGCCCCCCCAATCGTCGGAACCCCAA
694 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAA
* * * * * *
18049481 TGCC-ATCGGTCAGGTTCTCCTG-TGATGCTCCGACGATGGTGCCTCGGCGAAGAAAAATGCAGC
758 TGCCGCT-GGTCAGGTTCTCC-GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGC
* ** * * *
18049544 ACCAGCACATGCTCGAGCCCAGCATGTGCTAACGTAACCCTCGGTCTGGTCCGATGTTAGACTGG
821 ACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
*
18049609 GAATGAACTTCGTAT
886 GAATGAACTCCGTAT
* * * * *
18049624 GCTTAGACT-GGAAAGAACTCCGTACGCCTAAGTCAACCCATGAAATGAGCGTGCGAGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * *
18049688 CCGATCAGAAGGGCGGGATGCGCAAGCC-AGGGATCGGCCGGGTCCCCCTCTACATGCTACCGAT
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * * * * *
18049752 CTTGCTACCGCAACCCCCGGTCTGGTCCGATCTTAGACTAGGAGTGAACTCCGTATGCCTAAGCC
130 CCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
18049817 AACCGACGAAACGAGCGGGCGGGCGGGGGGGTGGGCACTACGTCGGCCAGAGAGATGGGATGCGC
195 AACCGACGAAACGAGCGGACGGGC----GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * *
18049882 AAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTACATGCCGATGC
256 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* *
18049947 CTTTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
321 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
18050012 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAACTTTT
386 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
*
18050077 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
451 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
18050142 AAAAAATCAGCTAAAAACTCAAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
18050207 TCAGGCACTTTAATAGCTACTGTCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
581 TCAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * ** * *
18050272 AGTTCTCGAGGTTTGATGAGGGACATGGGGTGAATATAAGGGCCAAGTACCAGCACCCTTTGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
18050337 ATCATGTGCGCACACCCTCCCCAGCCCCCCCAATCGTCGGAACCCCAATGCCG-TCGGTCAGGTT
711 ATCATGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCT-GGTCAGGTT
* * * * * *
18050401 CTCCTG-TGATGCTCCGACGATGGTGCCTCGGCGAAGAAAAATGCAGCACCAGCACATGCTCGAG
774 CTCC-GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
** * * * *
18050465 CCCAGCATGTGCTAACGTAACCCTCGGTCTGGTCCGATGTTAGACTGGGAATGAACTTCGTAT
838 CCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
18050528 GCTTAGACT-GGAAAGAACTCCGTACGCCTAAGTCAACCCATGAAATGAGCGTGCGAGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * *
18050592 CCGATCAGAAGGGCGGGATGCGCAAGCC-AGGGATCGGCCGGGTCCCCCTCTACATGCTACCGAT
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * * * *
18050656 CTTGCTACCGCAACCCCCGGTCTGGTCTGATCTTAGACTAGGAGTGAACTCCGTATGCCTAAGCC
130 CCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
18050721 AACCGACGAAACGAGCGGGCGGGCGGGGGGGTGGGCACTACGTCGGCCAGAGAGATGGGATGCGC
195 AACCGACGAAACGAGCGGACGGGC----GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * *
18050786 AAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTACATGCCGATGC
256 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* *
18050851 CTTTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
321 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * ** * * * *
18050916 ACGACTCGTTTTCTATTCTTCATGATTTTTGAAACTTTTTACAGTTTGGGATTTTTTTAAATTTT
386 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * *
18050981 TTCGGAAGGCA-TTTTGTCCCCAAACTTGGTAGACATGATCCTTGTATTTTTCTTGGCATGCACA
451 TTCGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
** * *
18051045 AAAAAATTCAGCTAAAAACTTAAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCTA
515 AAAAAATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* ** *
18051110 TTTCAGACACTTTAATAGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTG
579 TTTCAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
18051175 TGAGTTGTCGAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCTTTGC
644 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
18051240 ACATCATGTGCGCACACCCTCCCCGGCCCCCCCGATCGTCGAAACCCCAATGTCGCCGGTCAGGA
709 ACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCTGGTCAGGT
* ** *
18051305 TCTCCTG-TGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGAGGCACCAGCACATGCCCGA
773 TCTCC-GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* *
18051369 GCCCAGCATGTGCTG-CCCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
837 GCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
18051432 GCTTAGACTGGGAACGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
18051497 CCGGCCAGAGGGGCAGGGATGCGCAAGCCGGGGATCGGTCGGGTACCCCC-ATGCATGCTACCGA
66 CCGGCCAGAGGGGC-GGGATGCGCAAGCCGAGGATCGGCCGGGT-CCCCCTCTGCGTGCTGCCGA
* * ** ** *
18051561 TCTTGCTGCCGCAACCCTCGGTCCAGTCCAATCTTAAACTGGGAATGAACTCCGTATGCCTAAGC
129 TCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
18051626 CAACCGACGAAATGA---GA-GGGCGGGCGGGCACTACGGCGTCCAGAGAGGTC-GGATGCGCAA
194 CAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGA-GACGGGATGCGCAA
* * * * *
18051686 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTTTCCGTGCCAATTCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
18051751 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG-TCCATGGCAA-AC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* **
18051814 GACTCGTTTTCTCTTTTTCACGATTTGGGAAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTT
388 GACTCGTTTTCTATTTTTCACGATTT-TCAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTT
* * * *
18051878 CTCGG-A-GAGATTTTTGCCCCAATAAAC-TGGTAGATG-GATCCTTCGTATTTCTTTTTTGGCA
451 TTCGGAAGGAG-TTTTGGCCCC---AAACTTGGTAGACGTGATCCTT-GTA-TT-TTTGTTGGCA
*
18051939 TGCACAAAAAAATTCAGCTAAAAAACCTCGTAGTGTACAAGATTTGTGTGACCATTTGAAAAAAG
509 TGCACAAAAAAATTCAGCT-AAAAA-CTCGAAGTGTACAAGATTT-TGTGACCATTTGAAAAAAG
* * *
18052004 TGT-CCC-TTTGAGACACAAATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAGATGCTCT
571 TGTCCCCATTTCAGACAC--TTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAA-ATGCTCT
*
18052067 TTAAGGGGGTG-GAGTTCTC-AGGTTTGATGAGGGAATAGGGGACCAATATAAGGGCCAAGTACC
633 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG-ATAGGGGGCCAATATAAGGGCCAAGTACC
* *
18052130 AGCACCCATAGCACATCATGTGCGTACA--CCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGC
697 AGCACCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATG-
* *
18052192 CCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
760 CCGCTGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* * ** *
18052257 GCGACGTGCCCGAGCCCAGCACTGGTGCTGATCGCAACCCCTCAGTTTGGTCCTGATC-TGGACT
825 GC-ACATGCCCGAGCCCAGCA-T-GTGCTG-TCGCAA-CCCTCGGTCCGGTCC-GATCTTAGACT
*
18052321 -GGAATGAACTCCGTAA
884 GGGAATGAACTCCGTAT
* * * * *
18052337 GCTTAGACAGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTTAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** * ** **
18052402 CCGGCCAGAAGGGCAGGATGCACAAGCCGAGGAACGATCGAGTCCCCCTCTATGTGCTATCGATC
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* ** *
18052467 CTGCTGCCACAACCCTC-GATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCC
131 CTGCTGCCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
18052531 AACCGACGAAACGAGCGGGCGGACGGGCGGTCGGGCACTATCG-CTGGCCAGAGAGACGGGATAC
195 AACCGACGAAACGA----GCGGACGGGCGGGCGGGCACTA-CGTC-GGCCAGAGAGACGGGATGC
* * ** *
18052595 GCAAGCCGTGGATC-ATTAGGGTGGTAGGTGGGTTTAGGCAGATCTTCACATTTCTATGTGCGAA
254 GCAAGCCGTGGATCGA-TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAA
*
18052659 TTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
318 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * * * *
18052724 AGGACGACTCATTTTCTATTTTTCATGATTCTCGAAACTTTTTACTGTTCGAGATTTTTAAAAAT
383 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAAT
* *
18052789 TTTCTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCA
448 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * *
18052854 CAAAACAATTTAGCTAAAAACTCAAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCC
513 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * **
18052919 ATTTCAAACACTTTAATGGCTACCGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
578 ATTTCAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
18052984 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCATCG
643 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
*** * *
18053049 CACATCATGTGCGCACACCCCCAATGGCCCCCTCGATCGCCGGAACCCCAATGCCGAC-GGTCAG
708 CACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCG-CTGGTCAG
* ** * * *
18053113 GTTTTCCGGTGATGCT-CGGCGATGGTACCCCGATGAA-AAACAATGCGGCACCAGCACATGCTC
771 GTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAA-AATGCGGCACCAGCACATGCCC
** *
18053176 GAGCCCAGCATGTGCTACCGTAA-CC-C--T-C-G---G-TC-----C-------G-A-TCCG-A
835 GAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
18053216 T
900 T
18053217 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
18053281 CCGGCCAGAGGGGTGAGATGCGCAATCC-AGGGATCGGTCGGGT--CCC-C--C-T-CT---G--
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGAT
* * *
18053333 --TG-T------A--CT-A--C----C-GATCCT-G-CTGGGAATGAATTTCGTATGCCTAAGCC
130 CCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
18053377 AACCGATGAAACGAGCGGGCGGGCAGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGC
195 AACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * * * **
18053442 CGTAGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTTATATTTGTATGTGCCAATGCCATT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
* * *
18053507 TTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAGGACAA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
18053572 CTGGTTTTCTATTTTTCACGATTCTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTCTCG
390 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
* * * *
18053637 GAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTCTTGTTGGCATGCAAAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
18053702 ATTCAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTACAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
18053767 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTT
585 ACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
18053832 CTCGAGGTTTGATGAGGGA-AGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
650 CTCGAGGTTTGATGAGGGATA-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* **
18053896 ATGTGCGCACA-CCCCCCCGGCCCCCCTGATCATCGGAACCCCAATGCCG-TCGGAAAGG---T-
714 ATGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCT-GGTCAGGTTCTC
* *
18053955 ------T-CTCCGGCGATGGTGCCCCAACGAAG-AAAATGCGGCACCAGCACATGCCCGAGCCTA
777 CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
18054012 GCATGTGCTGTCGCAACCCTCTGTCCGGTCTGATCTGAGACTGGGAATGAACTCTGTAT
842 GCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* ** * *
18054071 GCTTAGAATGGGAATGAACTTTGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * * **
18054136 CCGGCCAGA-----GGGATGCACAAGCCGGGGATCGATCGGGTCCCCTTTTACGTGCTGTTGATC
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * ** *
18054196 CTACTGACGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
131 CTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * *
18054261 AATGACGAAACGAGCGTGCGAGCGGACGGGCGGACACTACGTCGACCAGAGAGACGGGATGCGCA
196 ACCGACGAAACGAGC--G-GA-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * * *
18054326 AGCCGTGGATCGATAGGGTGTTAGGTGTGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* * *
18054391 ATTTTTATGGCTTGTCAATTCATACAATGGTCCCTTAATCCTTCAAGTGAAGTTTCATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
18054456 CAACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
** * * * *
18054521 TCAAAAGGAGTTTTGGACCCAAACATGGTAGACGTGCTCCTTGTATTTTTGTTGGCATCCACAAA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
18054586 ACAATTCAGCTAAAAACTCGAAGTGTACGAGATTTTGTGACCATTTGAAAAAAGTGTCGCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
18054651 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
582 CAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
18054716 GTTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCACACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
18054781 TCATGTGCGCACA-ACCCCCCGGGCCCCCCGATTGTCGGAACCCCAATGCCG-TCGATCAGGTTC
712 TCATGTGCGCACACCCCCCCCGGCCCCCCCGA-TCTCGGAACCCCAATGCCGCT-GGTCAGGTTC
* * *
18054844 T-C--CG--G-T-----GATGGTGCCCCGGCGAAGAAAAATGAGACACCAGCACATGCCCGAGCC
775 TCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * *
18054898 CTGCATGTGCTGCCGCAACCCTAGGTCCAGTCTGATCTTAGACTGGGAAAGAACTCCGTAT
840 CAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
18054959 GCTTAGAC-GAGGAATGAACTCCGTATGCCTAAGTCAACCCACTAAACGAGCGTGCGGGCACTCA
1 GCTTAGACTG-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
18055023 ACCGGCCAGAGGGGCGGGATGCG-ATAGCCG-GTGATCAGTCGGGTCCCCCTCTCCGTGCTACCG
65 GCCGGCCAGAGGGGCGGGATGCGCA-AGCCGAG-GATCGGCCGGGTCCCCCTCTGCGTGCTGCCG
* * ** **
18055086 ATCCTGCTGCTGCAACCATCAGTCTTATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
128 ATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
18055151 CCAACCGATGAAACGATCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGATGAGATGCGCAA
193 CCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * *
18055216 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCCTGCCAATGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
18055281 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** * * *
18055346 GACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTT
388 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * *
18055411 TGGAAGGAGTTTTGGCCACAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
453 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
18055476 AAATTCAGCTAAAAACTTGGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTC
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
18055541 AGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAG
583 AGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
18055606 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** * * *
18055671 CATGTGCGCACA-CCCCCTTGGCCCCCCGGATCGTCGGAACCCCAGTGCCG-TCGATCAGG-T-T
713 CATGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCT-GGTCAGGTTCT
* * * ** *
18055732 ----C-A----CCGACGATGGTGCCCTGGCGAAGAAAAATATGACACCAGCACATGCCCGAGCCC
776 CCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * ** * * * * ** *
18055788 AGTATGTGCTGCCGTGACCCTCGGTCTGATTCGATCTTAGTCTGGGAATGAACTATGCAT
841 AGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
18055848 GCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * **
18055913 CCAGCCAGAGGGGCTGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTATGTGCTGCCGATC
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
** ** * *
18055978 CTATTGTTGTAACCCTCAGTTCT-GTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCC
131 CTGCTGCCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
** * * * **
18056042 AACTAATGAAACAAGCGGGCGGGCGTGCGGGCGGGCACTACGT-TACCAGAGAGACGGGATGCGC
195 AACCGACGAAACGAGCGGAC--G-G-GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * * *
18056106 AAGCGGTGGATCGATAAGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGC
256 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
*
18056171 CATTTTTATGGCTTGTAAATTCATACACTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
321 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * **
18056236 ATGACTCATTTTCTATTTTTTATGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTAAAATTT
386 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTT
* * * **
18056300 TTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCGTA
450 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
18056365 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAAATTTTGTAACTATTTGAAAAAAGTGTCCCCAT
515 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
** * * *
18056430 TTCTA-ACACTTTGCTGGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAAGGGGTG
580 TTC-AGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
18056494 TGAGTGCTTC-AGCTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAATACCAGCACCCATCG
644 TGAGTTC-TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
** * * *
18056558 CACATCATGTGCGCACACCCCCCCCGGCGTCCCCGATCACCGGAAACCCAATGCCGTTGGTCAGG
708 CACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCTGGTCAGG
* *
18056623 ---T-------T-CTCCGGCGATGGTGCCCCCG-CGAAGAAAAATACGGCACCAGCACGTGCCCG
772 TTCTCCGACGATGCTCCGGCGATGGTG-CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * * *
18056676 AGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCAATCTTAGGCTGGGAATGAACTCTGTAT
836 AGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
18056741 GCTTAGACTGGGAAGGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGTGGGCGTTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
18056806 CCGGCCAGAAGGGCGGGATACGTAAGTCGAGGATCGGTCGGGTCCCCCTTTGCGTGCTGCCGATC
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* * *
18056871 TTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 CTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
18056936 ACTGACGAAACGAGGGGGCGAACGGGCGGGCGGGCTCTATGTCGGCTAGAGAGACAGGATGCGCA
196 ACCGACGAAACGA----GCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* ** *
18057001 AGCCATGGATCGATATTGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCTACATGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
18057066 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * ** * *
18057131 CGACTCATTTTCTATTTTTCACGATTTTTGAAACATTTTGTGGTTCAAGATTTTTTGAAATTTTT
387 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* *
18057196 TCGAAAGGTGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18057260 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * ***
18057325 CAGACAATTTAATGGCTACTAG-CAGCAAACCTGTAAAATCTTAAATACCCTTTAAGGGGCAATG
582 CAGACACTTTAATGGCTACT-GCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18057389 AGTTCTCGAGGTTTGATGACGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
18057454 ATCATGTGCGCACA--CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCC-ATCGGTCAGGTT
711 ATCATGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCT-GGTCAGGTT
* ** *** * * * * ** *
18057515 TTCCGGTGATGCTCTAACAATGGTGCCCTGGCAAAGAAAAATATGGCACCAGCACATGCCCGAGG
774 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
18057580 CCAGCATGTGCTGTCGCAACCCT---T--GG--C---C-----C---G---G---TCCG-AT
839 CCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
*
18057617 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
18057681 CCAGCCAAAAGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATC
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* * ** * *
18057746 CTGCTACCGCAACCCTC-GTCCGGTCCAATCTTAGATTGGGAATGAGCTCCGTATGCCTAAGCCA
131 CTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * **
18057810 ACCGACGAAAC-A----A---GCAGGCGGGCACTATGTCGGCCAAAGAGATGGGATGCTTAAGCC
196 ACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* *
18057867 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
* *
18057932 TTATGGCTTGTAAATCCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGAC
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** *
18057997 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-CGGTTC-AGGATTTTTTTAAATTTTTTCG
391 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCG
* * * *
18058060 AAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCCCAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * **
18058125 ATTCAGCTAAAAGCTCGAAGTGTACAAGATTTTGGTGGACCATTTCAAAAAAAGTGTCCTTATTT
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTT-GT-GACCATTT-GAAAAAAGTGTCCCCATTT
* *
18058190 CCCAAGACACTGTTAATGGCTAACTATGGCTGCAAAACCCTGTAAAATCTCAAATGCTC-TTAAG
582 --C-AGACACT-TTAATGGCT-AC--TGCCAGC-AAA-CCTGTAAAATCTCAAATGCTCTTTAAG
* * *
18058254 GGGGTATGAGCTCTTCGAGG-TTGATGAGGGATAGGGGGCCAATATAAGGGCCTAGTACCAGCA-
638 GGGGTGTGAGTTC-TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * * *
18058317 CCATCGCACCCTCATGTGCGCACACCCCCCCAGGCCCCCTCAAT-TGCCGAAACCCTAATGCCGC
702 CCATCGCA-CATCATGTGCGCACACCCCCCCCGGCCCCCCCGATCT--CGGAACCCCAATGCCGC
* * * * * *
18058381 CGGTCAGGTTCTCCGGCGA---T-----GAT--AG-CCCGATGAAGAAAAATACGACACCAGCAC
764 TGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * *
18058435 ATGCCCGAGCCCAAG-ATGTGCTGGGCCACATATCCTC-GTCCGGT-CGATCTTAGACTGGAGCA
829 ATGCCCGAGCCC-AGCATGTGCT--GTCGCA-ACCCTCGGTCCGGTCCGATCTTAGACTGG-G-A
*
18058497 ATGAACTTCGTAT
888 ATGAACTCCGTAT
* * *
18058510 GCTTAGACTGGGAA-GAACTTCGTATGCCTAAGTCAAACCCACGAAAACGAACGTGACGGGTGCT
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACG-AAACGAGCGTG-CGGGCGCT
** * * * * * * * *
18058574 CAATCGGCCAGAGGGGCAGGATACGAAAGTCGGGGATCGGCCGGGTACCCCTCTACGTGCTACCG
63 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCG
* * * * * *
18058639 ATCCTGCTGCCGCAAACCTCGGTCCGGTCTGATCTGAGACTGAGAATGCACTCCGTATGCCTAAG
128 ATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
** * * *
18058704 CCAACCGACGAAACGAGCGGGTGGACGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
193 CCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
*
18058769 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTA-AGTGCCAATGCC
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACA-TGCCAATGCC
* *
18058833 ATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCGAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** *
18058898 CGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * *
18058963 TTGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18059028 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
** *
18059093 CAGACACTTTAATGGCTACTGGTAGCAAACTTGT-AAATCTCAAATGCTCTTTAAGGGGGTGTGA
582 CAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
18059157 GTTCTCGAGGTTTGAAGAGGAATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
18059222 TCATGTGCGCACACCCCCGCC-G-CCCCCCGATCGTCGGAACCCCAATGCCG-TCGGTCAGGTTC
712 TCATGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCT-GGTCAGGTTC
*
18059284 T-C--CG--G-T-----GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCC
775 TCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * *
18059338 CAGCATGTGCTGTCGCAACCATCGGTCTGGTTCGATCTTGGACTGGGAATGAACTCCGTAT
840 CAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
18059399 GCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAGCCCACAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * ** * * *
18059464 CTGACCAGAGGGGCAGGATGCGTAAGTCGAGGATCGATCGGGTCCCTCTCTGTGTGCTGCCAATC
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * *
18059529 CTACTGCTGCATCCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCA
131 CTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
18059594 ACCGACGAAAC-A--AG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
196 ACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
18059655 GTGGATCGATAGGGTGGTAGGTGGGTTTAGG---------------C-ACAT-CCAATGCCATTT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
* *
18059703 TTATGTCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** * * * *
18059768 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGTGGTACGGGATTTTTCAAAATTTTGTCGG
391 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* * *
18059833 AAGGAGTTTTTGCCCCAAAACATGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
456 AAGGAGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
18059898 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTCACCATTTGAAGAAAGTGTCCCTATTTCAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
18059963 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATGTCAAATGCTCTTTAAGGGGGTGTGAGTT
585 ACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
18060028 CTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * ** * *
18060093 TGTACGCACACACCCGCCC-GATCCCCCGATCGTTGAAACCCCAATGCCG-TCGGTCAGGTTCTC
715 TGTGCGCACAC-CCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCT-GGTCAGGTTCTC
18060156 C-A--A--------CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
777 CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC-
* * * * * *
18060210 AG-ATGTGCTGCCGCAACCCTCGTTCTGGTCTGATCTTAGGCTGAGAATGAACTCC-TAT
841 AGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
18060268 GCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGTGCACTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * ** *
18060333 CTGACTAGAGGGGCGGGAATGCGCAAGACGAGGATCGGCTGGGTCCCTCTCTATGTGCTGTCGAT
66 CCGGCCAGAGGGGCGGG-ATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * * *
18060398 CCTGCTACCACATCCCTC-GATCTGAT-TGAATCTTAAACTGGGAATGAACTCCGTATGCCTAAG
130 CCTGCTGCCGCAACCCTCAG-TCTGGTCTG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * ** * *
18060461 CCAATCGACGAAACAAGCGGA----CAGGCGGGCACTACACCGGCCATAGAGACGGGATGCACAA
193 CCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * * *
18060522 GCCGTGGATTGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTTTGCGTGCCAATGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
18060587 TTTTTATGGCTTGTAAATTCATACAATGG-CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** * * *
18060651 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTGGGGGATTTTTAAAAATTCTTT
388 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
*
18060716 CGGTAA-GAGTTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
453 CGG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18060780 ACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
18060845 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGATCTTTAAGGGGGTGCGA
582 CAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
18060910 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
18060975 TCATGTGCGCACA-CCCCCCCGGCCCTCTCGATCATCGAAACCCCAATGCCG-TCGATCAGGTTC
712 TCATGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCT-GGTCAGGTTC
* * * *
18061038 TCCGACGATGCTCTGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
775 TCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * *
18061103 CAAG-ATGTGCTGCCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTAT
840 C-AGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
** *
18061164 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCATGAGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
18061229 CCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATC
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* *
18061294 CTGCTACCGCAACCCTC-GATTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
131 CTGCTGCCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
** * *
18061358 AATTGATGAAACGAGCGGGTGGATGGGCGGGC-GGCAACTACGTCGGCCAGAGAGACGGGATGCG
195 AACCGACGAAACGAGC----GGACGGGCGGGCGGGC-ACTACGTCGGCCAGAGAGACGGGATGCG
** * ** * *
18061422 CAAGCTTTGGATCGAT-GGAGAGGTTTGTGGGTTTAGGCACATCTTCATATTTCTGCATGCTAAT
255 CAAGCCGTGGATCGATAGG-GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
*
18061486 GCCATTTTTATGGCTTGTAAATTAATACAA---TCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
319 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * *
18061548 AGACGACTCATTTTCTATTTTTCATGATTTTCAAAACCTTTTGCGGTTCGAGATTTTTTAAAATT
384 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* *
18061613 TTTTCGGAAGGTGTTTTTGGCCGGCCAAAACTTTGGTAGAACGTGAGATCCTTGGTATTTTTTTA
449 TTTTCGGAAGGAG-TTTTGGCC--CC-AAAC-TTGGTAG-ACGT--GATCCTT-GTA--TTTTTG
* * *
18061678 TTGACATGCAACAAAAAAA-TCATGCTAAAAAAACTGGAAGTGTACAAGATTTGGTGA-CATTTG
503 TTGGCATGC-ACAAAAAAATTCA-GCT--AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
18061741 AAAAAAGTGT--CCATTTCAAGACACTTTTAGTGGCTAACTTGGCAGCAAAACGCTGTAAAATCT
564 AAAAAAGTGTCCCCATTTC-AGACAC-TTTAATGGCT-AC-TGCCAGC-AAAC-CTGTAAAATCT
** *
18061804 CAAATGC-CTTTAAGGGGGTCAGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAATGG
623 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * ** *
18061868 CCAAGTACCAGCACCCATCGCACATCATGTGTGCATA-CCCCCCCGACCCCCTTGATCGCCGGAA
688 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAA
* * * * * * *
18061932 CCCTAATGTCGCCGGTAAGGTTCCCCGATGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATG
752 CCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATG
* * * * * *
18061997 CGGCACCAGCACTTGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGATCCAATCTTAGA
817 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGA
* * *
18062062 TTGAGAATGAACTCCGTAA
882 CTGGGAATGAACTCCGTAT
* * ** * *
18062081 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAACCGATTGTACGGGGGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * *
18062146 CCGGCCAGAGGGGTGGGATGTGCAAGCTG-GCCATCGGTCGAGTCCCCTTCTGTGTGCTACCAAT
66 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAG-GATCGGCCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * * * * *
18062210 CTTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGCC
130 CCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
18062275 AATCGACGAAACGAGCGGACGGGTGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGC
195 AACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* *
18062340 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGCCATT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
*
18062405 TTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * * *
18062470 CTCATTTTTTATTTTTCACGATTTTCAAAACTTTTTGCGGTGCGGGATTTTTTAAAATTTTTTTG
390 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
* *
18062535 GTAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
18062600 ATTCAGCTAAAAAATTGAAGTGAACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * **
18062665 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGATCTTTAAGGGGGTCCGAGTT
585 ACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
18062730 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATTGCACATCA
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * ** *
18062795 TGTGCGCACA--CCCACCGGCCCCCCCGATCATCGAAACCCCAATGCCGCCAGTCAGGTTCTCCT
715 TGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCTGGTCAGGTTCTCCG
* * * *
18062858 ACGATACTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGC
779 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * * *
18062923 ATGTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGATTGGAAATGAACTCCGTAT
844 ATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
18062980 GCTTAGACTGGGAATGAACTCCGTATGCTTAGGTCAACCCATGAAACGAGCGTGCAGGG-GCTCA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGGCGCTCA
* * * *
18063044 GCAGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCTGAT
65 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * * *
18063109 CCTGCTGTCGCAACCCT-TGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGC
130 CCTGCTGCCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
18063173 CAACCGACGAAACAAGCGGGCGAGCGGGCGGGCAGGCACTACGCCGCCCAGAGAGATGGGATGCG
194 CAACCGACGAAACGAGC--G-GA-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
* * * * * *
18063238 TAAGCCGTGGATCAATAGGATGGTAGGTGGGTTTAGGCACATCTTTATATTTTTACGTGCCAATG
255 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
18063303 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
320 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
18063368 GACGACTCATTTTTTATTTTTCACGATTTTCAAAACTTTTTGCGGTGCGAGATTTTTTAAAATTT
385 GACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
* *
18063433 TTTTGGTAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
450 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
18063498 AAACAAATTCAGCTAAAAAATTGAAGTGAACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
515 AAA-AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
18063563 TTTCAGACACTTTAATCGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
579 TTTCAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
** * *
18063628 CAAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATTGC
644 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * **
18063693 ACATCATGTGCGCACA--CCCACCGGCCCCCCCGATCATCGAAACCCCAATGCCGCCAGTCAGGT
709 ACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGCTGGTCAGGT
* * * * *
18063756 TCTCCTACGATACTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAG
773 TCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * * *
18063821 CCCAGCATGTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGATTGGAAATGAACTCCGTAT
838 CCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
18063884 GCTTAGACTGGGAATGAACTCCGTATGCTTAGGTCAACCCATGAAACGAGCGTGCAGGG-GCTCA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGGCGCTCA
* * * * *
18063948 GCAGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGAT
65 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * * * *
18064013 CCTGCTGTCGCAACCCT-TGATCCGATCTGATCTTAGACTGAGAATGAACTCTGTATGCCTAAGC
130 CCTGCTGCCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
18064077 CAACCGACGAAACAAGCGGGCGAGCGGGCGGGCAGGCACTACGCCGCCCAGAGAGATGGGATGCG
194 CAACCGACGAAACGAGC--G-GA-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
* * * * * *
18064142 TAAGCCGTGGATCAATAGGATGGTAGGTGGGTTTAGGCACATCTTTATATTTTTACGTGCCAATG
255 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
18064207 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
320 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
18064249 TTATTTGTTC
Statistics
Matches: 31850, Mismatches: 5742, Indels: 5087
0.75 0.13 0.12
Matches are distributed among these distances:
829 42 0.00
830 25 0.00
831 1 0.00
832 1 0.00
833 3 0.00
834 9 0.00
835 3 0.00
836 1 0.00
837 10 0.00
838 10 0.00
839 16 0.00
840 40 0.00
841 460 0.01
842 24 0.00
843 1 0.00
844 1 0.00
846 40 0.00
847 339 0.01
848 209 0.01
849 34 0.00
850 34 0.00
851 2 0.00
852 4 0.00
853 6 0.00
854 14 0.00
855 70 0.00
856 6 0.00
857 45 0.00
858 7 0.00
859 82 0.00
860 152 0.00
861 90 0.00
862 559 0.02
863 112 0.00
864 112 0.00
865 66 0.00
866 153 0.00
867 214 0.01
868 179 0.01
869 115 0.00
870 322 0.01
871 22 0.00
872 152 0.00
873 501 0.02
874 863 0.03
875 271 0.01
876 552 0.02
877 532 0.02
878 512 0.02
879 117 0.00
880 52 0.00
881 64 0.00
882 550 0.02
883 346 0.01
884 227 0.01
885 1019 0.03
886 429 0.01
887 923 0.03
888 300 0.01
889 1210 0.04
890 373 0.01
891 241 0.01
892 759 0.02
893 1070 0.03
894 597 0.02
895 273 0.01
896 396 0.01
897 167 0.01
898 594 0.02
899 848 0.03
900 359 0.01
901 490 0.02
902 1181 0.04
903 895 0.03
904 2851 0.09
905 1648 0.05
906 346 0.01
907 559 0.02
908 383 0.01
909 180 0.01
910 558 0.02
911 163 0.01
912 63 0.00
913 306 0.01
914 87 0.00
915 79 0.00
916 132 0.00
917 441 0.01
918 41 0.00
919 29 0.00
920 21 0.00
921 19 0.00
922 21 0.00
923 14 0.00
924 33 0.00
925 48 0.00
926 25 0.00
927 192 0.01
928 334 0.01
929 44 0.00
930 143 0.00
931 12 0.00
932 38 0.00
933 35 0.00
934 12 0.00
935 19 0.00
936 177 0.01
937 12 0.00
938 4 0.00
939 13 0.00
940 11 0.00
941 9 0.00
942 5 0.00
943 27 0.00
944 9 0.00
945 23 0.00
946 17 0.00
947 16 0.00
948 17 0.00
949 13 0.00
950 15 0.00
951 18 0.00
952 21 0.00
953 19 0.00
954 41 0.00
955 42 0.00
956 23 0.00
957 37 0.00
958 35 0.00
959 25 0.00
960 26 0.00
961 36 0.00
962 59 0.00
963 43 0.00
964 28 0.00
965 32 0.00
966 35 0.00
967 40 0.00
968 26 0.00
969 21 0.00
970 41 0.00
971 34 0.00
972 16 0.00
973 21 0.00
974 34 0.00
975 26 0.00
976 7 0.00
977 40 0.00
978 27 0.00
979 33 0.00
980 17 0.00
981 15 0.00
982 23 0.00
983 14 0.00
984 28 0.00
985 10 0.00
986 11 0.00
987 4 0.00
988 14 0.00
989 7 0.00
990 18 0.00
991 13 0.00
992 5 0.00
993 6 0.00
994 10 0.00
995 3 0.00
996 5 0.00
997 4 0.00
998 2 0.00
999 3 0.00
1000 4 0.00
1001 19 0.00
1002 10 0.00
1003 6 0.00
1004 10 0.00
1005 2 0.00
1006 6 0.00
1007 4 0.00
1008 13 0.00
1009 7 0.00
1010 6 0.00
1011 10 0.00
1012 19 0.00
1013 5 0.00
1014 19 0.00
1015 35 0.00
1016 25 0.00
1017 19 0.00
1018 12 0.00
1019 13 0.00
1020 56 0.00
1021 13 0.00
1022 13 0.00
1023 15 0.00
1024 164 0.01
1025 256 0.01
1026 284 0.01
1027 241 0.01
1028 200 0.01
1029 211 0.01
1030 284 0.01
1031 159 0.00
1032 197 0.01
1033 146 0.00
1034 131 0.00
1035 94 0.00
1036 121 0.00
1037 122 0.00
1038 238 0.01
1039 117 0.00
1040 169 0.01
1041 149 0.00
1042 122 0.00
1043 96 0.00
1044 87 0.00
1045 94 0.00
1046 83 0.00
1047 274 0.01
1048 284 0.01
1049 49 0.00
1050 51 0.00
1051 73 0.00
1052 53 0.00
1053 200 0.01
1054 52 0.00
1055 55 0.00
1056 32 0.00
1057 23 0.00
1058 27 0.00
1059 25 0.00
1060 155 0.00
1061 38 0.00
1062 49 0.00
1063 27 0.00
1064 71 0.00
1065 76 0.00
1066 39 0.00
1067 24 0.00
1068 52 0.00
1069 98 0.00
1070 64 0.00
1071 90 0.00
1072 160 0.01
1073 119 0.00
1074 50 0.00
1075 126 0.00
1076 28 0.00
1077 37 0.00
1078 23 0.00
1079 20 0.00
1080 6 0.00
1081 11 0.00
1082 2 0.00
1083 8 0.00
1084 9 0.00
1085 80 0.00
1086 351 0.01
1087 6 0.00
1088 2 0.00
1090 6 0.00
1091 4 0.00
1093 3 0.00
1094 8 0.00
1095 1 0.00
1096 13 0.00
1097 18 0.00
1098 13 0.00
1099 12 0.00
1100 21 0.00
1101 44 0.00
1102 16 0.00
1103 10 0.00
1104 9 0.00
1105 13 0.00
1106 4 0.00
1107 4 0.00
1108 9 0.00
1109 4 0.00
1110 7 0.00
1111 18 0.00
1112 21 0.00
1113 21 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
CTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCCCGGCCCCCCCGATCTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGAC
GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:18026852 original size:26 final size:26
Alignment explanation
Indices: 18026803--18026853 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18026793 GGTTCGATCC
*
18026803 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
18026829 TAGACTGGGAATGAACTCTATATGC
1 TAGACTGGGAATGAACTCCATATGC
18026854 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:18030353 original size:17 final size:17
Alignment explanation
Indices: 18030323--18030363 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
18030313 TTACGGCACT
*
18030323 AGCATATGCCCGAGCCC
1 AGCATGTGCCCGAGCCC
*
18030340 AGCATGTGCTCGAGCCC
1 AGCATGTGCCCGAGCCC
18030357 AGCATGT
1 AGCATGT
18030364 CCCACTGCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.22, C:0.34, G:0.27, T:0.17
Consensus pattern (17 bp):
AGCATGTGCCCGAGCCC
Found at i:18031268 original size:26 final size:26
Alignment explanation
Indices: 18031239--18031291 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18031229 CTGATCCGAT
*
18031239 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
18031265 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
18031291 C
1 C
18031292 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:18032193 original size:26 final size:26
Alignment explanation
Indices: 18032143--18032194 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
18032133 TCTGGTCCGA
* *
18032143 ACTTAGACTTGGAAAGAACTTCGTAT
1 ACTTAGACTGGGAAAGAACTCCGTAT
* *
18032169 ACTTAGACTGGGAATGACCTCCGTAT
1 ACTTAGACTGGGAAAGAACTCCGTAT
18032195 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
ACTTAGACTGGGAAAGAACTCCGTAT
Found at i:18037061 original size:26 final size:26
Alignment explanation
Indices: 18037025--18037077 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18037015 CTGGTCTGAT
*
18037025 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18037051 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18037077 C
1 C
18037078 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18038886 original size:26 final size:26
Alignment explanation
Indices: 18038808--18038886 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
18038798 CCAGTCTGAT
*
18038808 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
18038834 CTTAGACTGGGAATGAACTCTGGATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
18038860 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18038886 C
1 C
18038887 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18040637 original size:26 final size:26
Alignment explanation
Indices: 18040601--18040653 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18040591 CTGGTCTGAT
18040601 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18040627 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18040653 C
1 C
18040654 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18041522 original size:26 final size:26
Alignment explanation
Indices: 18041484--18041539 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
18041474 CTGGTCCAAT
18041484 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18041510 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18041536 CTTA
1 CTTA
18041540 AGTCAACCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18044155 original size:26 final size:26
Alignment explanation
Indices: 18044115--18044167 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18044105 CCGGTCTGGT
18044115 CTTAGACTAGAAATGAACTCCATATG
1 CTTAGACTAGAAATGAACTCCATATG
* * *
18044141 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCATATG
18044167 C
1 C
18044168 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCATATG
Found at i:18044574 original size:882 final size:878
Alignment explanation
Indices: 18043248--18045795 Score: 3423
Period size: 882 Copynumber: 2.9 Consensus size: 878
18043238 CCGGTCTGAT
* * * *
18043248 CTTAAACTGGGAATGAGCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGTGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * *
18043313 CGGCCAGAAGGGCGA-GATGCATAAGTCGGGGATTGATCGGGT-CCCCTCTGCGTGCTGCCAATC
66 CGGCCAG-AGGG-GAGGATGCGCAAGCCGGGGATCGATCAGGTCCCCCTCTGCGTGCTGTCGATC
* * *
18043376 CTGCTGCCGCAACCCTTGGTCCGGTTTGATCTTAGACTGGGAATGAACTTCGTATGCGTAAGCCA
129 CTGCTGCCGCAACCCTCGGTCC-GTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
* * * * *
18043441 ACCGACGAAATGAGTGTGCGGGCGGCCAGGAGGGTACTACGCCGGCCAGAAAGACGGGATGCGCA
193 ACCGAAGAAACGA----GC-GGCGG-C----GGGCACGACGCCGGCCAGAGAGACGGGATGCGCA
* ** **
18043506 AGCCGTGGATCGATAGGGTGGTAGGTGGATTTACACACATCTTCATATTTCAGT-GTGCCAATGC
248 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TTTCGTGCCAATGC
*
18043570 CATTTTTATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
312 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
18043635 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGAGATTTTTTAAAATTTT
377 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
*
18043700 TTCAGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AA
442 TTC-GAAGGAGTTTTGGCCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
* *
18043764 AAAACATTCAACTAAAAACACGAAGTGTACAAGATTTTGTGACCCTTTGAAAAAAATGTCCCCAT
506 AAAA-ATTCAACTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
18043829 TTCAGACACTTTAATGGCTATTGGCAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
570 TTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * **
18043894 GAGTTTTTGAGGATTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATTGCA
635 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGAACAAGTACCAGCACCCATTGCA
* * *
18043959 CACCATGTGCGTACACCCCCCACGGCCCCCCCGATCACCGGAACCCCATTACCGTCGGTCAGGTT
700 CATCATGTGCG-ACACCCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATACCG-CGGTCAGGTT
18044024 CTCCGACGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
762 CTCCGACGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * *
18044089 TGCCACAACCCTCGGTCCGGTCTGGTCTTAGACTAGAAATGAACTCCATATG
827 TACCACAACCCTCGGTCCGATCCGATCTTAGACTAGAAATGAACTCCATATG
* * *
18044141 CTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACTAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** *
18044206 CGGCCAGAGGGGTAGGACGCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTGCGTGGTGTCGATCC
66 CGGCCAGAGGGG-AGGATGCGCAAGCCGGGGATCGATCAGGTCCCCCTCTGCGTGCTGTCGATCC
* * *
18044271 TACTGTCGCAACCCTCAGTCCAGTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
130 TGCTGCCGCAACCCTCGGTCC-GTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
*
18044336 CCGAAGAAACGAGC-G-GGCGGGCACGACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATC
194 CCGAAGAAACGAGCGGCGGCGGGCACGACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
*
18044399 GATAGGGTGGTAGGTGGGTTTAGGCACATTTTCATATTTTTTCGTGCCAATGCCATTTTTATGGC
259 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTTCGTGCCAATGCCATTTTTATGGC
* * * *
18044464 TTCTAGATTCATACAATCGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
324 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* *
18044529 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGAAAGGATT
389 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG-AAGGAGT
* * * *
18044594 TTTGGCCCCAAACATGGTGGACATGATCCTTGTATTTTTGATAGCATGCACAAAAAAATTCAGCT
453 TTTGGCCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACT
* * * *
18044659 CAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTA
518 AAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
*
18044724 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-TGAGTTCTCGAGGT
583 ATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
18044788 TTGATGTGGGATAGGGGGCCAATATAA-GAACAAGTACCAGCACCCATCGCACATCATGTGCG-C
648 TTGATGAGGGATAGGGGGCCAATATAAGGAACAAGTACCAGCACCCATTGCACATCATGTGCGAC
* * * *
18044851 ACCCCCCCGACCCCCTCGATTGCCGGAACCCTAATACCGCCGGTCAGGTTCTCCGACGATGGTGC
713 ACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATACCG-CGGTCAGGTTCTCCGACGATGGTGC
*** * * **
18044916 CCTGGCGAAGAAAAATGTGGCACCAGCACATGCCCGGGCCCAGCATGTGCTACCGTAACCCTCGG
777 CCCAACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGG
* * * *
18044981 TCCGATCCGATCTTAGACTGGGAATGAACTTCGTATG
842 TCCGATCCGATCTTAGACTAGAAATGAACTCCATATG
* * *
18045018 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *** * ** * *
18045083 CGGCCAGAGGGGCGGGATGTGCAATCCGGGGATCGATCTTTTCCCCATCTATGTGCTATCGATCT
66 CGGCCAGAGGGG-AGGATGCGCAAGCCGGGGATCGATCAGGTCCCCCTCTGCGTGCTGTCGATCC
* * *
18045148 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTGCCGCAACCCTCGGTCCGTTC-GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
* * * *
18045213 TCGATGAAACGAGCGGCCGAGCGGGCGGGCGAGCACTACACAGGCCAGAGAGACGGGATGCGCAA
194 CCGAAGAAACGAGCGG-CG-GCGGGC--AC--G-AC-GC-C-GGCCAGAGAGACGGGATGCGCAA
* *
18045278 GTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCA
249 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTTCGTGCCAATGCC-
*
18045343 ATTTTT-T-GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGA
313 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * *
18045406 CGACTCGTTTTTTATTTTTCACGAATTTTGAAACCTTTTGCAGTTCAAGA-TTTTTAAAATTTTT
378 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * * *
18045470 TCGGAAGGCGTTTTGGCACCAAACTTGGTAGACACGATCCTCGTATTTTTGTTGGCATGCACAAA
443 TC-GAAGGAGTTTTGGCCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18045535 AAAATTCAACTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCGCATTT
507 AAAATTCAACTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
18045600 CAGACACTTTAATGGCTACTT-ACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
572 CAGACACTTTAATGGCTA-TTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * * * *
18045664 AGTTCTCAAGGTTTGATGAGGGACATGGGGCGAATATAAGGGACAAGTACCAGCACCCTTTGCAC
636 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGAACAAGTACCAGCACCCATTGCAC
* * *
18045729 ATCATGTGCGCACACCCTCCCCGG-CCCCCCAATCGTCGGAACCCCAATGCCGCTGGTCAGGTTC
701 ATCATGTGCG-ACACCC-CCCCGGCCCCCCCGATCGCCGGAACCCCAATACCGC-GGTCAGGTTC
18045793 TCC
763 TCC
18045796 TGTGATGCTC
Statistics
Matches: 1457, Mismatches: 170, Indels: 58
0.86 0.10 0.03
Matches are distributed among these distances:
876 3 0.00
877 313 0.21
878 9 0.01
880 32 0.02
881 45 0.03
882 376 0.26
883 7 0.00
885 1 0.00
886 3 0.00
887 187 0.13
888 134 0.09
889 116 0.08
890 9 0.01
891 41 0.03
892 10 0.01
893 84 0.06
894 87 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (878 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGAGGATGCGCAAGCCGGGGATCGATCAGGTCCCCCTCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTCCGTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACC
GAAGAAACGAGCGGCGGCGGGCACGACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTTCGTGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAGGAGTTTT
GGCCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAA
AACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGAACAAGTACCAGCACCCATTGCACATCATGTGCGACACC
CCCCCGGCCCCCCCGATCGCCGGAACCCCAATACCGCGGTCAGGTTCTCCGACGATGGTGCCCCA
ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCCG
ATCCGATCTTAGACTAGAAATGAACTCCATATG
Found at i:18045028 original size:26 final size:26
Alignment explanation
Indices: 18044992--18045044 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18044982 CCGATCCGAT
*
18044992 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18045018 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18045044 C
1 C
18045045 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18046084 original size:26 final size:26
Alignment explanation
Indices: 18046048--18046100 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18046038 CCGGTCTAAT
* *
18046048 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18046074 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18046100 C
1 C
18046101 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:18046962 original size:26 final size:26
Alignment explanation
Indices: 18046926--18046978 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18046916 CTGATCCGAT
*
18046926 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
*
18046952 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
18046978 C
1 C
18046979 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:18047856 original size:26 final size:26
Alignment explanation
Indices: 18047827--18047877 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18047817 CGGTCCGATC
*
18047827 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACAGGGAATGAACTCCGTATGG
18047853 TTAGACAGGGAATGAACTCCGTATG
1 TTAGACAGGGAATGAACTCCGTATG
18047878 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (26 bp):
TTAGACAGGGAATGAACTCCGTATGG
Found at i:18051436 original size:26 final size:26
Alignment explanation
Indices: 18051407--18051459 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18051397 CCGGTCCGAT
* *
18051407 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCATATG
18051433 CTTAGACTGGGAACGAACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
18051459 C
1 C
18051460 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:18054972 original size:26 final size:26
Alignment explanation
Indices: 18054934--18054986 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18054924 CCAGTCTGAT
18054934 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
18054960 CTTAGAC-GAGGAATGAACTCCGTATG
1 CTTAGACTG-GGAAAGAACTCCGTATG
18054986 C
1 C
18054987 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:18055483 original size:889 final size:888
Alignment explanation
Indices: 18053349--18064248 Score: 13667
Period size: 889 Copynumber: 12.2 Consensus size: 888
18053339 ACCGATCCTG
* * * * * *
18053349 CTGGGAATGAATTTCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCAGGCGGGCACTAT
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTAC
* * *
18053414 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTGGTTGGTGGGTTTAGGCACAT
66 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * * *
18053479 CTTTATATTTGTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGC
131 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * ** * * *
18053544 CTTCACGTGAAGTTTCATGGCAGGACAACTGGTTTTCTATTTTTCACGATTCTCGAAACTTTTTA
196 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTG
* * * *
18053609 CGGTTCGAGATTTTTTAAAATTTTCTCGGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCC
261 CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
18053674 TTGTATTCTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGA
326 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
18053739 CTATTTGAAAAAAGTGTCCCCATTACAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
391 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
18053804 TCAAATGCTCTTTGAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA-AGGGGGGCCAATATAAG
456 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGGCCAATATAAG
*
18053868 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCTGATCATCGGA
520 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC-GATCGTCGGA
* * *
18053933 ACCCCAATGCCGTCGGA-AAGGTTCTCCGGCGATGGTGCCCCAACGAAG-AAAATGCGGCACCAG
584 ACCCCAATGCCGTC-GATCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAG
* * * *
18053996 CACATGCCCGAGCCTAGCATGTGCTGTCGCAACCCTCTGTCCGGTCTGATCTGAGACTGGGAATG
648 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
* * ** * *
18054061 AACTCTGTATGCTTAGAATGGGAATGAACTTTGTATGCCTAAGTCAACCCACAAAATGAGCGTGC
713 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACTAAACGAGCGTGC
* * * * *
18054126 GGGCGCTCAGCCGGCCAGA-----GGGATGCACAAGCCGGGGATCGATCGGGTCCCCTTTTACGT
778 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGT
** * * **
18054186 GCTGTTGATCCTACTGACGCAACCCTCAGTCCGATCCAATCTTAGA
843 GCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGA
* ** * *
18054232 CTGGGAATGAACTCTGTATGCCTAAGCCAAATGACGAAACGAGCGTGCGAGCGGACGGGCGGACA
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GA-CGGGCGGGCGGGCA
* * *
18054297 CTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGTTAGGTGTGTTTAGGC
62 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
18054362 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTCAATTCATACAATGGTCCCTT
127 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
18054427 AATCCTTCAAGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
192 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTT
* * ** * *
18054492 TTTACGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGACCCAAACATGGTAGACGTG
257 TTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * *
18054557 CTCCTTGTATTTTTGTTGGCATCCACAAAACAATTCAGCTAAAAACTCGAAGTGTACGAGATTTT
322 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
18054622 GTGACCATTTGAAAAAAGTGTCGCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
387 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
18054687 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCTAATAT
452 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
18054752 AAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAACCCCCCGGGCCCCCCGATTGTC
517 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCCGGCCCCCCGATCGTC
* * *
18054817 GGAACCCCAATGCCGTCGATCAGGTTCTCCGGTGATGGTGCCCCGGCGAAGAAAAATGA-GACAC
581 GGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAAT-ACGGCAC
* * *
18054881 CAGCACATGCCCGAGCCCTGCATGTGCTGCCGCAACCCTAGGTCCAGTCTGATCTTAGACTGGGA
645 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGA
*
18054946 AAGAACTCCGTATGCTTAGAC-GAGGAATGAACTCCGTATGCCTAAGTCAACCCACTAAACGAGC
710 ATGAACTCCGTATGCTTAGACTG-GGAATGAACTCCGTATGCCTAAGTCAACCCACTAAACGAGC
* * * *
18055010 GTGCGGGCACTCAACCGGCCAGAGGGGCGGGATGCG-ATAGCCGGTGATCAGTCGGGTCCCCCTC
774 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA-AGCCGGGGATCGGTCGGGTCCCCCTC
* * * * ** **
18055074 TCCGTGCTACCGATCCTGCTGCTGCAACCATCAGTCTTATCCAATCTTAGA
838 TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGA
* *
18055125 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGATCGGACGGGCGGGCGGGCACTAC
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTAC
* *
18055190 GTCGGCCAGAGAGATGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
66 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
18055255 CTTTATATTTCTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
131 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* **
18055320 CTTCACGTGAAGTTTCATGGCAGGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTG
196 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTG
* * * *
18055385 CGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCACAAACTTGGTAGACATGATCC
261 CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
18055450 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGGAGTGTACAAGATTTTGTGA
326 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
18055515 CCATTTGAAAAAAGCGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATC
391 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
18055580 TCAAATGCTCTTTAAGGGTGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
456 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
**
18055645 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTTGGCCCCCCGGATCGTCGGAA
521 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC-GATCGTCGGAA
* * * * * * *
18055710 CCCCAGTGCCGTCGATCAGGTTCACCGACGATGGTGCCCTGGCGAAGAAAAATATGACACCAGCA
585 CCCCAATGCCGTCGATCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCA
* ** * * *
18055775 CATGCCCGAGCCCAGTATGTGCTGCCGTGACCCTCGGTCTGAT-TCGATCTTAGTCTGGGAATGA
650 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGA
** * *
18055839 ACTATGCATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-TGAAACGAGCGTGC
714 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACT-AAACGAGCGTGC
* * * ** **
18055903 GGGTGCTCAGCCAGCCAGAGGGGCTGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTATGT
778 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGT
** ** * *
18055968 GCTGCCGATCCTATTGTTGTAACCCTCAGTTCTG-TCTGATCTTAGA
843 GCTGCCGATCCTGCTGCCGCAACCCTCAG-TCCGATCTGATCTTAGA
* ** * * *
18056014 CTGAGAATGAACTCCGTATGCCTAAGCCAACTAATGAAACAAGCGGGCGGGCGTGCGGGCGGGCA
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAC--G-G-GCGGGCGGGCA
** * * *
18056079 CTACGT-TACCAGAGAGACGGGATGCGCAAGCGGTGGATCGATAAGGTGGTAGGTGGGTTTAGGA
62 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
18056143 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACACTGGTCCCTT
127 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * **
18056208 AAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTTATGATTTTTGAAACTT
192 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTT
* * * *
18056273 TTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTG
257 TTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* ** *
18056338 ATCCTTGTATTTTTTTTGGCATGCGTAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAAATTTT
322 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * **
18056403 GTAACTATTTGAAAAAAGTGTCCCCATTTCTA-ACACTTTGCTGGCTACTGGCAGCAAACCTGTA
387 GTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * * * *
18056467 AAATCTCAATTGCTCTTTAAAGGGGTGTGAGTGCTTC-AGCTTTGATGAGGGATAGGAGGCCAAT
451 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
18056531 ATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGGCGTCCCCGATC
515 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGC-CCCCCGATC
** * * *
18056596 ACCGGAAACCCAATGCCGTTGGTCAGGTTCTCCGGCGATGGTGCCCCCG-CGAAGAAAAATACGG
578 GTCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGGTG-CCCCGACGAAGAAAAATACGG
* * ** *
18056660 CACCAGCACGTGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCAATCTTAGGCTG
642 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTG
* * *
18056725 GGAATGAACTCTGTATGCTTAGACTGGGAAGGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
707 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACTAAACGA
* * * * * * * *
18056790 GTGTGTGGGCGTTCAGCCGGCCAGAAGGGCGGGATACGTAAGTCGAGGATCGGTCGGGTCCCCCT
772 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCT
* * * *
18056855 TTGCGTGCTGCCGATCTTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGA
837 CTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGA
* * *
18056907 CTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGGGGGCGAACGGGCGGGCGGGCT
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGACGGGCGGGCGGGCA
* * * * ** *
18056972 CTATGTCGGCTAGAGAGACAGGATGCGCAAGCCATGGATCGATATTGTGGTAGGTGGGCTTAGGC
62 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
18057037 ACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
127 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
** *
18057102 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACAT
192 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTT
* ** * * *
18057167 TTTGTGGTTCAAGATTTTTTGAAATTTTTTCGAAAGGTGTTTT-GCCCCAAACTTGGTAGACGTG
257 TTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
18057231 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
322 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
18057296 GTCACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTAATGGCTACTAGCAGCAAACCTGTAA
387 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * * *** * *
18057361 AATCTTAAATACCCTTTAAGGGGCAATGAGTTCTCGAGGTTTGATGACGCATAGGGGGCCAATAT
452 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
*
18057426 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGCCG
517 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCG
* * * * * * *
18057490 GAACCCCAATGCCATCGGTCAGGTTTTCCGGTGATGCTCTAACAATGGTGCCCTGGCAAAGAAAA
582 GAACCCCAATGCCGTCGATCAGGTTCTCC---G--G------CGATGGTGCCCCGACGAAGAAAA
* * *
18057555 ATATGGCACCAGCACATGCCCGAGGCCAGCATGTGCTGTCGCAACCCT---T--GG-C----C--
636 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTT
*
18057608 ---C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
701 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACT
* * * * * *
18057659 AAACGAGCATGCGGGCGCTCAGCCAGCCAAAAGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGT
766 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT
* * * **
18057724 CCCCCTCTGCGTGCTGCCAATCCTGCTACCGCAACCCTC-GTCCGGTCCAATCTTAGA
831 CCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGA
* * * *
18057781 TTGGGAATGAGCTCCGTATGCCTAAGCCAACCGACGAAAC-A----A---GCAGGCGGGCACTAT
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTAC
* * **
18057838 GTCGGCCAAAGAGATGGGATGCTTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
66 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
18057903 CTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATCCATACAATGGTCCCTTAAGC
131 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * **
18057968 CTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-
196 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTG
* * * *
18058032 CGGTTCAGGATTTTTTTAAATTTTTTCGAAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCC
261 CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
18058097 TTGTATTTTTTTTGGCATGCCCAAAAAAATTCAGCTAAAAGCTCGAAGTGTACAAGATTTTGGTG
326 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT-GT-
* ** *
18058162 GACCATTTCAAAAAAAGTGTCCTTATTTCCCAAGACACTGTTAATGGCTAACTATGGCTGCAAAA
389 GACCATTT-GAAAAAAGTGTCCCCATTT--C-AGACACT-TTAATGGCT-AC--TGGCAGC-AAA
* *
18058227 CCCTGTAAAATCTCAAATGCTC-TTAAGGGGGTATGAGCTCTTCGAGG-TTGATGAGGGATAGGG
445 -CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGATAGGG
* *
18058290 GGCCAATATAAGGGCCTAGTACCAGCA-CCATCGCACCCTCATGTGCGCACACCCCCCCAGGCCC
508 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA-CATCATGTGCGCACACCCCCCC-GGCCC
* * * * * * * * *
18058354 CCTCAATTGCCGAAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGATAG-CCCGATGAAGAA
571 CC-CGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGGT-GCCCCGACGAAGAA
* * *
18058418 AAATACGACACCAGCACATGCCCGAGCCCAAG-ATGTGCTGGGCCACATATCCTC-GTCCGGTC-
634 AAATACGGCACCAGCACATGCCCGAGCCC-AGCATGTGCT--GCCGCA-ACCCTCGGTCCGGTCT
* *
18058480 GATCTTAGACTGGAGCAATGAACTTCGTATGCTTAGACTGGGAA-GAACTTCGTATGCCTAAGTC
695 GATCTTAGACTGG-G-AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * ** * * * *
18058544 AAACCCACGAAAACGAACGTGACGGGTGCTCAATCGGCCAGAGGGGCAGGATACGAAAGTCGGGG
758 -AACCCAC-TAAACGAGCGTG-CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * * *
18058609 ATCGGCCGGGTACCCCTCTACGTGCTACCGATCCTGCTGCCGCAAACCTCGGTCCGGTCTGATCT
820 ATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGATCTGATCT
*
18058674 GAGA
885 TAGA
* * ** * *
18058678 CTGAGAATGCACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGACGGACGGGCACTAC
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTAC
* *
18058743 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACAT
66 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
18058808 CTTCATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGC
131 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * ** *
18058873 CTTCACGTGAAGTTTCATGGCGAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTA
196 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTG
* *
18058938 CGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCC
261 CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
18059003 TTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
326 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
18059068 CCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACTTGT-AAATC
391 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
18059132 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAAGAGGAATAGGGGGCCAACATAAGG
456 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
18059197 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCC-GCCCCCCGATCGTCGGAA
521 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CCGGCCCCCCGATCGTCGGAA
* * *
18059261 CCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
585 CCCCAATGCCGTCGATCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCA
* * * * *
18059326 CATGCTCGAGCCCAGCATGTGCTGTCGCAACCATCGGTCTGGT-TCGATCTTGGACTGGGAATGA
650 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGA
* * * *
18059390 ACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAGCCCACAAAACGAGCGTGCG
714 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACTAAACGAGCGTGCG
* * * * * * * * *
18059455 GGCGCTCAGCTGACCAGAGGGGCAGGATGCGTAAGTCGAGGATCGATCGGGTCCCTCTCTGTGTG
779 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTG
* * * * * *
18059520 CTGCCAATCCTACTGCTGCATCCCTCGGTCTGATCTGATCTTAGA
844 CTGCCGATCCTGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGA
* *
18059565 CTGGGAATGAACTCCGCATGCCTAAGCCAACCGACGAAAC-A--AG-CGGGCGGGCGGGCACTAC
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTAC
18059626 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG-----
66 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
18059686 ---C--A---C-A--T-CCAATGCCATTTTTATGTCTTGTAAATTCATACAATGGTCCTTTAAGC
131 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
18059739 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTG
196 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTG
* * * * * * *
18059804 TGGTACGGGATTTTTCAAAATTTTGTCGGAAGGAGTTTTTGCCCCAAAACATGGTAGATGTGATC
261 CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC-AAACTTGGTAGACGTGATC
* *
18059869 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTC
325 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
18059934 ACCATTTGAAGAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAAT
390 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
18059999 GTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAG
455 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* ** * *
18060064 GGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACACCCGCCCGATCCCCCGATCGTTGA
520 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCC-CCCGGCCCCCCGATCGTCGG
* ** *
18060129 AACCCCAATGCCGTCGGTCAGGTTCTCCAACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
583 AACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAG
* * * *
18060194 CACATGCCCGAGCCCAAG-ATGTGCTGCCGCAACCCTCGTTCTGGTCTGATCTTAGGCTGAGAAT
648 CACATGCCCGAGCCC-AGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAAT
* *
18060258 GAACTCC-TATGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCA-TGAAACGAGCGT
712 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACT-AAACGAGCGT
* * * * * * * *
18060321 GCGTGCACTCAGCTGACTAGAGGGGCGGGAATGCGCAAGACGAGGATCGG-CTGGGTCCCTCTCT
776 GCGGGCGCTCAGCCGGCCAGAGGGGCGGG-ATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCT
** * * * * * *
18060385 ATGTGCTGTCGATCCTGCTACCACATCCCTC-GATCTGAT-TGAATCTTAAA
839 GCGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCCGATCTG-ATCTTAGA
* * *
18060435 CTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACAAGCGGA----CAGGCGGGCACTAC
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTAC
** * * * *
18060496 ACCGGCCATAGAGACGGGATGCACAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTGGGCACAT
66 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
18060561 CTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG-CCCTTAAGC
131 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
18060625 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTG
196 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTG
** * * *
18060690 CGGTGGGGGATTTTTAAAAATTCTTTCGGTAA-GAGTTTTGGCTCCAAACTTGGTAGACGTGATC
261 CGGTTCGGGATTTTTTAAAATTTTTTCGG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
18060754 CTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
325 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
18060819 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
390 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
18060884 CTCAAATGATCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
455 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * *
18060949 GGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGGCCCTCTCGATCATCGAA
520 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC-CCCGATCGTCGGA
*
18061014 ACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCTGACGATGGTGCCCCGATGAAGAAAAAT
584 ACCCCAATGCCGTCGATCAGGTTCT-C--C---G----G-CGATGGTGCCCCGACGAAGAAAAAT
* * * **
18061079 GCGGCACCAACACATGCCCGAGCCCAAG-ATGTGCTGCCGTAACCCTCGGTCCGGTCCAATCTTA
638 ACGGCACCAGCACATGCCCGAGCCC-AGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTA
* *
18061143 GACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
702 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACTA
** * * *
18061208 AACGAGCGTGCATGAGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTC
767 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * ** *
18061273 CCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTC-GATTTGGTCTGATCTTAGA
832 CCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCCGATCTGATCTTAGA
** * *
18061330 CTGGGAATGAACTCCGTATGCCTAAGCCAATTGATGAAACGAGCGGGTGGATGGGCGGGC-GGCA
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----GGACGGGCGGGCGGGC-
** * **
18061394 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTTTGGATCGAT-GGAGAGGTTTGTGGGTTTAG
61 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG-GTGGTAGGTGGGTTTAG
* * * *
18061458 GCACATCTTCATATTTCTGCATGCTAATGCCATTTTTATGGCTTGTAAATTAATACAA---TCCC
125 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
18061520 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAAC
190 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAAC
* * *
18061585 CTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGTGTTTTTGGCCGGCCAAAACTTTGGT
255 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG-TTTTGGCC--CC-AAAC-TTGGT
* * *
18061650 AGAACGTGAGATCCTTGGTATTTTTTTATTGACATGCAACAAAAAAA-TCATGCTAAAAAAACTG
315 AG-ACGT--GATCCTT-GTA--TTTTTGTTGGCATGC-ACAAAAAAATTCA-GCT--AAAAACTC
* *
18061714 GAAGTGTACAAGATTTGGTGA-CATTTGAAAAAAGTGT--CCATTTCAAGACACTTTTAGTGGCT
370 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACAC-TTTAATGGCT
**
18061776 AACTTGGCAGCAAAACGCTGTAAAATCTCAAATGC-CTTTAAGGGGGTCAGAGTTCTCGAGGTTT
433 -AC-TGGCAGC-AAAC-CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
18061840 GATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCATA
494 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * * * *
18061905 CCCCCCCGACCCCCTTGATCGCCGGAACCCTAATGTCGCCGGTAAGGTTCCCCGATGATGCTCCG
559 CCCCCCCGGCCCCC-CGATCGTCGGAACCCCAA--T-GCC-GT--CGAT---C-A-GGTTCTCCG
* * * *
18061970 GTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACTTGCCCGAGCCTAGCATGTGCTGCCG
612 GCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * ** * * *
18062035 CAACCCTCGGTCTGATCCAATCTTAGATTGAGAATGAACTCCGTAAGCTTAGACTGGGAATGAAC
677 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* ** * * *
18062100 TCCGTATGCCTAAGTCAACCCA-TGAACCGATTGTACGGGGGCTCAGCCGGCCAGAGGGGTGGGA
742 TCCGTATGCCTAAGTCAACCCACT-AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * ** * * * * * * * *
18062164 TGTGCAAGCTGGCCATCGGTCGAGTCCCCTTCTGTGTGCTACCAATCTTGCTACCGCAACCCTCG
806 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCA
*
18062229 GTCCGATCCGATCTTAGA
871 GTCCGATCTGATCTTAGA
* * *
18062247 CTGGGAATGAACTCCGTATGCTTAAGCCAATCGACGAAACGAGCGGACGGGTGGGCGGGCACTAC
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTAC
* *
18062312 GTCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACAT
66 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
18062377 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGC
131 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
18062442 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTCAAAACTTTTTG
196 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTG
* * *
18062507 CGGTGCGGGATTTTTTAAAATTTTTTTGGTAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
261 CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * *
18062572 TTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAAATTGAAGTGAACAAGATTTTGTGA
326 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
18062637 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
391 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* **
18062702 TCAAATGATCTTTAAGGGGGTCCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
456 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * *
18062767 GCCAAGTTCCAGCACCCATTGCACATCATGTGCGCACA-CCCACCGGCCCCCCCGATCATCGAAA
521 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAA
*
18062831 CCCCAATGCCG-CCAGTCAGGTTCTCCTACGATACTCCGACGATGGTGCCCCGACGAAGAAAAAT
585 CCCCAATGCCGTCGA-TCAGGTTCT-C--CG-------G-CGATGGTGCCCCGACGAAGAAAAAT
* * *
18062895 ACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCGGTCTGATCTTAG
638 ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAG
* * * *
18062960 ATTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGGTCAACCCA-TGA
703 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACT-A
* * *
18063024 AACGAGCGTGCAGGG-GCTCAGCAGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGT
767 AACGAGCGTGC-GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT
* * *
18063088 CCCCCTCTGCGTGCTGCTGATCCTGCTGTCGCAACCCT-TGATCCGATCTGATCTTAGA
831 CCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCCGATCTGATCTTAGA
* * *
18063146 CTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGAGCGGGCGGGCAGGCA
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GA-CGGGCGGGCGGGCA
* * * * * *
18063211 CTACGCCGCCCAGAGAGATGGGATGCGTAAGCCGTGGATCAATAGGATGGTAGGTGGGTTTAGGC
62 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
18063276 ACATCTTTATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
127 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
18063341 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTCAAAACTT
192 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTT
* * * *
18063406 TTTGCGGTGCGAGATTTTTTAAAATTTTTTTGGTAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
257 TTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
18063471 ATCCTTGTATTTTTGTTGGCATGCACAAAACAAATTCAGCTAAAAAATTGAAGTGAACAAGATTT
322 ATCCTTGTATTTTTGTTGGCATGCACAAAA-AAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
18063536 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATCGCTACTGGCAACAAACCTGTA
386 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
**
18063601 AAATCTCAAATGCTCTTTAAGGGGGTGCAAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
451 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * *
18063666 TAAGGGCCAAGTTCCAGCACCCATTGCACATCATGTGCGCACA-CCCACCGGCCCCCCCGATCAT
516 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGT
* *
18063730 CGAAACCCCAATGCCG-CCAGTCAGGTTCTCCTACGATACTCCGACGATGGTGCCCCGACGAAGA
580 CGGAACCCCAATGCCGTCGA-TCAGGTTCT-C--CG-------G-CGATGGTGCCCCGACGAAGA
* * *
18063794 AAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCGGTCTGAT
633 AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGAT
* * * *
18063859 CTTAGATTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGGTCAACCC
698 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * **
18063924 A-TGAAACGAGCGTGCAGGG-GCTCAGCAGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGAC
763 ACT-AAACGAGCGTGC-GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
* * *
18063987 CGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTGTCGCAACCCT-TGATCCGATCTGATCTTAGA
826 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCCGATCTGATCTTAGA
* * * *
18064050 CTGAGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGAGCGGGCGGGCAGGCA
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GA-CGGGCGGGCGGGCA
* * * * * *
18064115 CTACGCCGCCCAGAGAGATGGGATGCGTAAGCCGTGGATCAATAGGATGGTAGGTGGGTTTAGGC
62 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
18064180 ACATCTTTATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
127 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
18064245 AAGC
192 AAGC
18064249 TTATTTGTTC
Statistics
Matches: 8866, Mismatches: 897, Indels: 487
0.86 0.09 0.05
Matches are distributed among these distances:
861 35 0.00
862 272 0.03
863 2 0.00
864 7 0.00
865 63 0.01
866 148 0.02
867 138 0.02
868 113 0.01
869 95 0.01
870 309 0.03
871 5 0.00
872 15 0.00
873 77 0.01
874 83 0.01
875 140 0.02
876 34 0.00
877 3 0.00
878 1 0.00
880 2 0.00
881 1 0.00
883 119 0.01
884 38 0.00
885 243 0.03
886 111 0.01
887 682 0.08
888 191 0.02
889 812 0.09
890 73 0.01
891 29 0.00
892 540 0.06
893 721 0.08
894 314 0.04
895 230 0.03
896 167 0.02
897 56 0.01
898 6 0.00
899 321 0.04
900 113 0.01
901 166 0.02
902 41 0.00
903 438 0.05
904 766 0.09
905 220 0.02
906 124 0.01
907 7 0.00
908 7 0.00
909 7 0.00
910 7 0.00
911 7 0.00
912 27 0.00
913 136 0.02
914 30 0.00
915 37 0.00
916 112 0.01
917 389 0.04
918 19 0.00
919 1 0.00
920 3 0.00
921 2 0.00
922 1 0.00
923 2 0.00
925 1 0.00
926 1 0.00
927 2 0.00
928 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCACTAC
GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTG
CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAAC
CCCAATGCCGTCGATCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCAC
ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACTAAACGAGCGTGCGGG
CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT
GCCGATCCTGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGA
Found at i:18056752 original size:26 final size:26
Alignment explanation
Indices: 18056716--18056768 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18056706 CCGGTCCAAT
* * *
18056716 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
18056742 CTTAGACTGGGAAGGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
18056768 C
1 C
18056769 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:18058533 original size:25 final size:28
Alignment explanation
Indices: 18058483--18058536 Score: 87
Period size: 25 Copynumber: 2.0 Consensus size: 28
18058473 TCCGGTCGAT
18058483 CTTAGACTGGAGCAATGAACTTCGTATG
1 CTTAGACTGGAGCAATGAACTTCGTATG
18058511 CTTAGACTGG-G-AA-GAACTTCGTATG
1 CTTAGACTGGAGCAATGAACTTCGTATG
18058536 C
1 C
18058537 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
25 13 0.50
26 2 0.08
27 1 0.04
28 10 0.38
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (28 bp):
CTTAGACTGGAGCAATGAACTTCGTATG
Found at i:18061175 original size:26 final size:26
Alignment explanation
Indices: 18061139--18061191 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18061129 CCGGTCCAAT
*
18061139 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18061165 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18061191 C
1 C
18061192 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18062095 original size:26 final size:26
Alignment explanation
Indices: 18062056--18062105 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18062046 CTGATCCAAT
*
18062056 CTTAGATTGAGAATGAACTCCGTAAG
1 CTTAGACTGAGAATGAACTCCGTAAG
*
18062082 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGAGAATGAACTCCGTA
18062106 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTAAG
Found at i:18062984 original size:26 final size:26
Alignment explanation
Indices: 18062955--18063011 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
18062945 CCGGTCTGAT
*
18062955 CTTAGATTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
18062981 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
18063007 CTTAG
1 CTTAG
18063012 GTCAACCCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:18063888 original size:26 final size:26
Alignment explanation
Indices: 18063859--18063915 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
18063849 CCGGTCTGAT
*
18063859 CTTAGATTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
18063885 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
18063911 CTTAG
1 CTTAG
18063916 GTCAACCCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:18064586 original size:32 final size:32
Alignment explanation
Indices: 18064550--18064620 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 32
18064540 ATTCTTATAG
** *
18064550 TTTTTTTGTTGCATTTTCTTTTTT-TGTTTTCA
1 TTTTTTT-TTGCATTAACTTTTTTCTGTTTTAA
*
18064582 TTTTTATTTTGCATTAACTTTTTTCTTTTTTAA
1 TTTTT-TTTTGCATTAACTTTTTTCTGTTTTAA
18064615 TTTTTT
1 TTTTTT
18064621 GCCCTTGAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
32 20 0.61
33 13 0.39
ACGTcount: A:0.11, C:0.08, G:0.06, T:0.75
Consensus pattern (32 bp):
TTTTTTTTTGCATTAACTTTTTTCTGTTTTAA
Found at i:18065549 original size:19 final size:20
Alignment explanation
Indices: 18065526--18065568 Score: 54
Period size: 18 Copynumber: 2.2 Consensus size: 20
18065516 TTTTGTTTTG
18065526 CTTTAATATTTT-TTTCTTT
1 CTTTAATATTTTATTTCTTT
* *
18065545 -TTTTATTTTTTATTTCTTT
1 CTTTAATATTTTATTTCTTT
18065564 CTTTA
1 CTTTA
18065569 TTTATATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 3
0.76 0.12 0.12
Matches are distributed among these distances:
18 9 0.47
19 7 0.37
20 3 0.16
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (20 bp):
CTTTAATATTTTATTTCTTT
Found at i:18065558 original size:23 final size:24
Alignment explanation
Indices: 18065532--18065581 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
18065522 TTTGCTTTAA
* *
18065532 TATTTTTTTCTTTTTTTAT-TTTT
1 TATTTCTTTCTTTATTTATATTTT
18065555 TATTTCTTTCTTTATTTATATTTT
1 TATTTCTTTCTTTATTTATATTTT
18065579 TAT
1 TAT
18065582 AAATTTTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 17 0.71
24 7 0.29
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.80
Consensus pattern (24 bp):
TATTTCTTTCTTTATTTATATTTT
Found at i:18065569 original size:19 final size:18
Alignment explanation
Indices: 18065512--18065571 Score: 59
Period size: 19 Copynumber: 3.3 Consensus size: 18
18065502 TTACATTTTA
* *
18065512 TATTTTTTGTT-TTGCTT
1 TATTTTTTTTTCTTTCTT
* *
18065529 TAATATTTTTTTCTTTTTT
1 T-ATTTTTTTTTCTTTCTT
18065548 TATTTTTTATTTCTTTCTT
1 TATTTTTT-TTTCTTTCTT
18065567 TATTT
1 TATTT
18065572 ATATTTTTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
17 1 0.03
18 14 0.41
19 19 0.56
ACGTcount: A:0.12, C:0.07, G:0.03, T:0.78
Consensus pattern (18 bp):
TATTTTTTTTTCTTTCTT
Found at i:18065582 original size:8 final size:7
Alignment explanation
Indices: 18065456--18065581 Score: 67
Period size: 7 Copynumber: 17.0 Consensus size: 7
18065446 TTTTTGTCTA
18065456 TTTTTAT
1 TTTTTAT
18065463 TTTTTAT
1 TTTTTAT
*
18065470 TTTTGAT
1 TTTTTAT
**
18065477 TCATTAT
1 TTTTTAT
18065484 TTTTTAT
1 TTTTTAT
18065491 TTTCTTACT
1 TTT-TTA-T
*
18065500 TTTTACAT
1 TTTT-TAT
*
18065508 TTTATAT
1 TTTTTAT
*
18065515 TTTTTGTT
1 TTTTT-AT
*
18065523 TTGCTTTAA
1 TT--TTTAT
*
18065532 TATTT-T
1 TTTTTAT
*
18065538 TTTCT-T
1 TTTTTAT
18065544 TTTTTAT
1 TTTTTAT
18065551 TTTTTAT
1 TTTTTAT
*
18065558 TTCTTTCT
1 TT-TTTAT
18065566 TTATTTAT
1 TT-TTTAT
18065574 ATTTTTAT
1 -TTTTTAT
18065582 AAATTTTTAT
Statistics
Matches: 89, Mismatches: 21, Indels: 17
0.70 0.17 0.13
Matches are distributed among these distances:
6 8 0.09
7 44 0.49
8 26 0.29
9 8 0.09
10 3 0.03
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.75
Consensus pattern (7 bp):
TTTTTAT
Found at i:18066199 original size:7 final size:7
Alignment explanation
Indices: 18066180--18066238 Score: 55
Period size: 7 Copynumber: 8.1 Consensus size: 7
18066170 CATTTTTGTC
18066180 TTTTTCTA
1 TTTTT-TA
18066188 TTTTTTA
1 TTTTTTA
*
18066195 TTTTTGA
1 TTTTTTA
**
18066202 TTCATTA
1 TTTTTTA
18066209 TTTTTTA
1 TTTTTTA
18066216 TTTTCTTA
1 TTTT-TTA
*
18066224 CTTTTTA
1 TTTTTTA
*
18066231 TATTTTA
1 TTTTTTA
18066238 T
1 T
18066239 ACTTTTGTTT
Statistics
Matches: 41, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
7 30 0.73
8 11 0.27
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.75
Consensus pattern (7 bp):
TTTTTTA
Found at i:18066925 original size:7 final size:7
Alignment explanation
Indices: 18066906--18066964 Score: 55
Period size: 7 Copynumber: 8.1 Consensus size: 7
18066896 CATTTTTGTC
18066906 TTTTTCTA
1 TTTTT-TA
18066914 TTTTTTA
1 TTTTTTA
*
18066921 TTTTTGA
1 TTTTTTA
**
18066928 TTCATTA
1 TTTTTTA
18066935 TTTTTTA
1 TTTTTTA
18066942 TTTTCTTA
1 TTTT-TTA
*
18066950 CTTTTTA
1 TTTTTTA
*
18066957 TATTTTA
1 TTTTTTA
18066964 T
1 T
18066965 ACTTTTTGTT
Statistics
Matches: 41, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
7 30 0.73
8 11 0.27
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.75
Consensus pattern (7 bp):
TTTTTTA
Found at i:18067002 original size:15 final size:16
Alignment explanation
Indices: 18066984--18067022 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
18066974 TTTGGTTTAA
18066984 TATTTTTTTCTTT-TT
1 TATTTTTTTCTTTATT
*
18066999 TATTTCTTTCTTTATT
1 TATTTTTTTCTTTATT
18067015 TATATTTT
1 TAT-TTTT
18067023 CATAAATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 12 0.60
16 5 0.25
17 3 0.15
ACGTcount: A:0.13, C:0.08, G:0.00, T:0.79
Consensus pattern (16 bp):
TATTTTTTTCTTTATT
Found at i:18067564 original size:717 final size:716
Alignment explanation
Indices: 18064248--18072158 Score: 12210
Period size: 726 Copynumber: 11.0 Consensus size: 716
18064238 GTCCCTTAAG
*
18064248 CTTATTTGTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
18064313 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTT
* * *
18064378 GTTTTTCTAATTTTTTTTGCAAAATTTTTTTTTATTTCTTCTTTCCA-TTTTTTTTCACACTTCC
131 GTTTTTCTAATTTTTTTCGCAAAA-TTCTTTTTATTTCTTGTTTCCATTTTTTTTTCACACTTCC
* *
18064442 TTAGATTTTTTATTTTTCATAAATCTCTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCAC
195 TTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCAC
18064507 AAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAG--TTTTTTTGTTGCATTTTCTT
260 AAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTTGTTGCATTTTCTT
* * *
18064570 TTTTTGTTTTCATTTTTATTTTGCATTAACTTTTTTCTTTTTTAATTTTTTGCCCTTGAATTTTT
325 TTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTGAATTTTT
18064635 ATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATA-TTTTTTT
390 ATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTT
*
18064699 CTATTTTCTCGTTTCAATTCATTTTTGTCTTTTTTTATTTTTTATTTTTGATTCATTA--TTTT-
455 CTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTATTTTTGATTCATTATTTTTTA
*
18064761 TTTTCTTACTTTTTCTATTTTATATTTTTTGTTTTGCTTTAATA--TTTTT-TTTTTTATTTCTT
520 TTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTATTTCTT
* *
18064823 TTTTTCTTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTCTTTTTT
585 TCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGG--------A-----------TTTTTT
*
18064888 TATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTT
631 TATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTTCCTTTT
18064953 AAATTTTTCTTTTTCTTTTTTA
696 AAATTTTTCTTTTT-TTTTTTA
*
18064975 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACATTTTTTCTTCGTTTTAAAAATTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
18065040 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCA---TTT-TTTTTTCTT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTT
* *
18065101 GTTTTTCTAATTTTTTTCACAAATTTCTTTTTATTTCTTGTTTCCATTTTTTTTTCACACTTCCT
131 GTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTTCACACTTCCT
* *
18065166 TGGAGTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTCATTTTTTCACA
196 TGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACA
18065231 AATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATA-TTTTTTTTTGTTGCATTTTCTTT
261 AATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTTGTTGCATTTTCTTT
*
18065295 TTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTGAGTTTTTA
326 TTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTGAATTTTTA
18065360 TATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTTT
391 TATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATA-TTTTTTTT
*
18065425 CTATTTTCTCGTTTCATTTCATTTTTGTCTATTTTTATTTTTTATTTTTGATTCATTATTTTTTA
455 CTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTATTTTTGATTCATTATTTTTTA
*
18065490 TTTTCTTACTTTTTACATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTTATTTTT
520 TTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTC--------TTTTT
*
18065555 TATTTCTTTCTTTATTTATATTTTTATAAATTTTTATAATGTTTTGGATTTTTTTATTTATCGTT
577 TATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTATCGTT
* *
18065620 GTTTCTTATTTTCGATTGTATTTTTATACTTTTTCATTAACTCTTTTTCCTTTTAAATTTTTC-T
642 GTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTTCCTTTTAAATTTTTCTT
18065684 TTTTTTTTTA
707 TTTTTTTTTA
*
18065694 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTCTTTTTACTTTTTTTCTTCGTTTTAAAAAT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTG--TTTTCACTTTTTTTCTTCGTTTTAAAAAT
*
18065759 TTCTAAAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTTATTTTTT
64 TTCTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCA-TTTTTTATTTTTT
*
18065824 CTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTTCACATTT
128 CTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTTCACACTT
* *
18065889 CCTTGGATTTTTTCTTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTT
193 CCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTC
* *
18065954 ACAAATTTGTTTTCATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTTGTTGCATTTTC
258 ACAAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTTGTTGCATTTTC
18066019 TTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTGAATTT
323 TTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTGAATTT
18066084 TTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTT
388 TTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTT
*
18066149 TTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTCTATTTTTTATTTTTGATTCATTATTTTT
453 TTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTATTTTTGATTCATTATTTTT
* *
18066214 TATTTTCTTACTTTTTATATTTTATA-CTTTTGTTTTGGTTTAATATTTTTTTTCTTTTTTA-TT
518 TATTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATA-TTTTTTTCTTTTTTATTT
*
18066277 CTTTCTTTATTTATATTTTCAATAATTTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTCTT
582 CTTTCTTTATTTATATTTTC-ATAAATTTTTATAATGTTTTGG--------A---------T-TT
*
18066342 TTTTATTTATCATTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTTCCT
628 TTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTTCCT
18066407 TTTAAATTTTTC--TTTTTTTTTA
693 TTTAAATTTTTCTTTTTTTTTTTA
* * *
18066429 CTTCTTTTTTTCATGTGCTTTCATATTTCCTTTTGTTATCACTTTTTTTCTTCGTTTTAAAAATT
1 CTT-ATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATT
18066494 TCTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCA----TT-TTTTTTCT
65 TCTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCT
*
18066554 TGTTTTTCTAATTTTTTTCGCAAATTTCTTTTTATTTCTTGTTTCCATTTTTTTTTCCACACTTC
130 TGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTT-CACACTTC
* *
18066619 CTTGGAGTTTTTATTTTTCAT-AATCTTTTGTCTTTTCATTTTTTATTCTTTTCTTCATTTTTTC
194 CTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCA-TTTTTATTCTTTTCTTAATTTTTTC
18066683 ACAAATTTCTTTTTA-TTTTTATTTTCATTTTTAAATTCTTATA--TTTTTTTTGTTGCATTTTC
258 ACAAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTTGTTGCATTTTC
*
18066745 TTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTGAGTTT
323 TTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTGAATTT
*
18066810 TTATATTGTTTGCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTT
388 TTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTT
*
18066875 TTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTCTATTTTTTATTTTTGATTCATTATTTTT
453 TTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTATTTTTGATTCATTATTTTT
* *
18066940 TATTTTCTTACTTTTTATATTTTATACTTTTTGTTTTGGTTTAATATTTTTTTCTTTTTTATTTC
518 TATTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTATTTC
18067005 TTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTATCGTTGTTTCT
583 TTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTATCGTTGTTTCT
* *
18067070 TATTTTCGATTGTATTTTTATACTTTTTCATTAACTCTTTTTCCTTTTAAATTTTTCTTTTTTTT
648 TATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTTCCTTTTAAATTTTTCTTTTTTTT
18067135 TTTA
713 TTTA
*
18067139 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTCTTTTTACTTTTTTTCTTCGTTTTAAAAAT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTG--TTTTCACTTTTTTTCTTCGTTTTAAAAAT
* * * * *
18067204 TTCCAAAAAACATTTTTTCTTTTTATTTTATTTCACATTTTTGCCTCTTTATTTTTTTATTTTGT
64 TTCTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCA-TTTTTTATTTTTT
* * *
18067269 CTTGTTTTTCTAATTTTTTTTGTAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTTCACATTT
128 CTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTTCACACTT
*
18067334 CCTTGGATTTTTTCTTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTT-
193 CCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTC
* *
18067398 ACAAATTTGTTTTCA-TTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTTGTTGCATTTTC
258 ACAAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTTGTTGCATTTTC
18067462 TTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTGAATTT
323 TTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTGAATTT
18067527 TTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTT
388 TTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTT
18067592 TTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTATTTTTGATTCATTATTTTT
453 TTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTATTTTTGATTCATTATTTTT
* *
18067657 GATTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAAAATTTTTTTCTTTTTTTATTT
518 TATTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTC--------TTT
*
18067722 TTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTATCT
575 TTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTATCG
18067787 TTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTT-CTTTTAAATTTTTC
640 TTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTTCCTTTTAAATTTTTC
18067851 TTTTTTTTTTTA
705 TTTTTTTTTTTA
18067863 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
*
18067928 CTACAAATCATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTTTATTTTTTC
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCA--TTTTTTATTTTTTC
*
18067993 TTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTTAACACTTC
129 TTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTTCACACTTC
18068058 CTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCA
194 CTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCA
* *
18068123 CAAATTTCTTTTTATTTTTTATTTTTATTTTTAAATTCTTATAGTTTTTTTTTTGTTGTATTTTC
259 CAAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAG-TTTTTTTTTGTTGCATTTTC
*
18068188 TTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTGACTTT
323 TTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTGAATTT
*
18068253 TTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTAAAAT-TTTTTT
388 TTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTT
* *
18068317 TTCTATTTTCTCATTTCATTTCATTTTTGTCTTTTTTTATTTTTTATTTTTTATTCATTATTTTT
453 TTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTATTTTTGATTCATTATTTTT
18068382 TATTTTCTTACTTTTTATATTTTATA-TTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTATTTC
518 TATTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTATTTC
* *
18068446 TTTCTTTATTTATGTTTTCATAAATTTTTATAATATTTTGGATTTTTTTATTTATCGTTGTTTCT
583 TTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTATCGTTGTTTCT
18068511 TATTTTCTTATTGTATTTTTATAATTTTTCATTAAACTCTTTTTTCCTTTTAAA-----------
648 TATTTTC-TATTGTATTTTTATAATTTTTCATT-AACTC-TTTTTCCTTTTAAATTTTTCTTTTT
18068565 ------A
710 TTTTTTA
18068566 -TT-TTTTTTCATGTGCTTTCATATTTTC-TTTG-TTTCA--TTTTTTCTTCG-TTTAAAAATTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
* *
18068624 CTACAAATCA-------TTTTTATTTCA----ATA-TTTTGCCTCTTCATTTTTTA-TTTTTCTT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTT
18068676 GTTTTTCTAA-TTTTTTCGCAGAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTTCAACACTTC
131 GTTTTTCTAATTTTTTTCGCA-AAATTCTTTTTATTTCTTGTTTCCATTTTTTTTTC-ACACTTC
*
18068740 CTTCGATTTTTTATTTTTCAT-AATCTTTTGTC-TTTCATCTTTTATTCTTTTCTTAATTTTTT-
194 CTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCAT-TTTTATTCTTTTCTTAATTTTTTC
*
18068802 ACAAATTTCTTTTTA-TTTTTCTTTTCA-TTTTAAA-TCTTATAG-TTTTTTTTGTTGCATTTTC
258 ACAAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTTGTTGCATTTTC
* * *
18068863 TTTTTTC-ATTTCAATTTTATTTTGGCATTAACTTTTCTCCTTTTTAAATTTTTTGTCCTTGAAT
323 TTTTTTCGTTTTCATTTTTATTTT-GCATTAACTTTTCT-CTTTTTTAATTTTTTGTCCTTGAAT
* *
18068927 TTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTATGTATTTTTTTGAAATATTT
386 TTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTA-TTTTTTCAAATATTT
**
18068992 TTTTTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTAAAATTT-ATTCATTAT
450 TTTTTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTT-ATTTTTGATTCATTAT
18069056 TTTTTATTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTTCTTTTTT
514 TTTTTATTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATA-TTTTTTTC-TTTTT
18069121 TATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTTGGTTTTTTTCTTTTTCTTT
577 TATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATG-TTTTGG-----------------
* *
18069186 TTCTTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCT
624 --ATTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTT
18069251 TTTCCTTTTAAATTTTTCTTTTTTTTTTTA
687 TTTCCTTTTAAATTTTTCTTTTTTTTTTTA
* *
18069281 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTGTCTTCATTTTAAAAATTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
*
18069346 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTTATTTTTTATTTCTTTCT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTATTT-TTTCT
*
18069411 TATTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCA-TTTTTTTTCACACTTCC
130 TGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTTCACACTTCC
*
18069475 TTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCGC
195 TTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCAC
* * *
18069540 AAATTTTTTTTTATTTTTTGTTTTCATTTTGAAATTCTTATAGTTTTTTTTTTGTTGCATTTTCT
260 AAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAG-TTTTTTTTTGTTGCATTTTCT
* * *
18069605 TTTTTTGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTATCCTTGAGTTTT
324 TTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTGAATTTT
18069670 TATATTGTTTTCTTATTATATCTTATATGTTTTTCAA-TTTTTGTATTTTTTCAAATATTTTTTT
389 TATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTT
* *
18069734 TCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATATTTTATATTTT-A-T-ATTTTTTTT
454 TCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTAT-TTTTGATTCATTATTTTT
** ** * * * * * * ***
18069796 TGCTTTAATA-TTTTTTTCTTTTTTATTTCTTT-CTTT-ATTT-ATATTTTCATAAATTTTTATA
518 TATTTTCTTACTTTTTATATTTTATATTT-TTTGTTTTGCTTTAATATTTT-TTTCTTTTTTAT-
* * ** * *
18069857 ATGTTT-TGGA--T-T-TTTT--T--ATTTTTCT-A----TT--CTTTTTTTATTTATCGTTGTT
580 TTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTATCGTTGTT
18069906 TCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTTCCTTTTAAATTTTTCTTTTT
645 TCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTTCCTTTTAAATTTTTCTTTTT
18069971 TTTTTTA
710 TTTTTTA
* *
18069978 CTTATTTTTTTATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTGTTCGTTTTAAAAATTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
18070043 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTT
18070108 GTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTTCACACTTCCT
131 GTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTTCACACTTCCT
18070173 TGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACA
196 TGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACA
18070238 AATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTTGTTGCATTTTCTTT
261 AATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTTGTTGCATTTTCTTT
18070303 TTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTGAATTTTTA
326 TTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTGAATTTTTA
18070368 TATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATA-TTTTTTTC
391 TATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTTC
18070432 TATTTTCTCGTTTCATTTCATTTTTGTC-TTTTTTA-TTTTTATTTTTGATTCATTA-TTTTTAT
456 TATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTATTTTTGATTCATTATTTTTTAT
18070494 TTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATA-TTTTTTCTTTTTTATTTCTTT
521 TTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTATTTCTTT
18070558 CTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTCTTTTTTT
586 CTTTATTTATATTTTCATAAATTTTTATAATGTTTTGG--------A-----------TTTTTTT
*
18070623 ATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTTA
632 ATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTTCCTTTTA
18070688 AATTTTTCTTTTTTTTTTTA
697 AATTTTTCTTTTTTTTTTTA
18070708 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
18070773 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTTATTTTTTCT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCA-TTTTTTATTTTTTCT
18070838 TGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCA-TTTTTTTTCACACTTCC
130 TGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTTCACACTTCC
18070902 TTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCAC
195 TTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCAC
18070967 AAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAG-TTTTTTTTGTTGCATTTTCTT
260 AAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTTGTTGCATTTTCTT
18071031 TTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTGAATTTTT
325 TTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTGAATTTTT
18071096 ATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATA-TTTTTTT
390 ATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTT
*
18071160 CTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTATTTTTGATTCATTATTTTTGA
455 CTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTATTTTTGATTCATTATTTTTTA
* * *
18071225 TTTTATTACTTTTTATATTTTTTATTTTTTATTTTGCTTTAATATTTTTTTCTTTTTTTATTTCT
520 TTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTC-TTTTTTATTTCT
18071290 TTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTCCTTTTCTTTTT
584 TTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGG--------A-----------TTTTT
* *
18071355 TTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACCCCTTTTCCTTT
630 TTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTTCCTTT
18071420 TAAATTTTTC-TTTTTTTTTTA
695 TAAATTTTTCTTTTTTTTTTTA
18071441 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTT--AAA---
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
* *
18071501 -T-----ATATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTTTTCATTTTTTTATTTTTTCT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCA-TTTTTTATTTTTTCT
*
18071560 TGTTTTTTTAATTTTTTTCGCAAAATT-TTTTTATTTCTTGTTTCCATTTTTTTTTCACACTTCC
130 TGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTTCACACTTCC
18071624 TTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCAC
195 TTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCAC
18071689 AAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTTTTGTTGCATTTTC
260 AAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAG--TTTTTTTTTGTTGCATTTTC
18071754 TTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTGAATTT
323 TTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTGAATTT
18071819 TTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTC-AA-ATTTTTT
388 TTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTT
*
18071882 TTCTATTTTCTCGTTTTATTTCATTTTTGTCTTTTTTTATTTTTTATTTTTGATTCATTATTTTT
453 TTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTATTTTTGATTCATTATTTTT
* * *
18071947 GATTTTCTTACTTTTTATGTTTTATATTTTTTGTTTTGCTTTAATATTTTTTCTTTTTTTTAATT
518 TATTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATA--------TTTTTTT-CTT
*
18072012 TTTTATTTCTTTCTTTATTTATATTTTCTTAAATTTTTATAATGTTTTGGATTTTTTTATTTATC
574 TTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTATC
* * *
18072077 GTTGTTTCTTTTTTTCTATTGTATTTTTATAATTTATCATTAACTCCTTTTCCTTTTAAATTTTT
639 GTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTTCCTTTTAAATTTTT
18072142 CTTTTTTTTTTTTA
704 C-TTTTTTTTTTTA
18072156 CTT
1 CTT
18072159 TTTACGGTTC
Statistics
Matches: 6716, Mismatches: 238, Indels: 472
0.90 0.03 0.06
Matches are distributed among these distances:
674 14 0.00
675 39 0.01
676 71 0.01
677 18 0.00
678 96 0.01
679 33 0.00
680 39 0.01
681 130 0.02
682 40 0.01
684 13 0.00
685 3 0.00
689 10 0.00
693 4 0.00
694 7 0.00
695 25 0.00
696 259 0.04
697 369 0.05
698 17 0.00
699 11 0.00
700 33 0.00
701 55 0.01
702 3 0.00
703 1 0.00
704 7 0.00
705 1 0.00
708 76 0.01
709 32 0.00
710 13 0.00
711 74 0.01
713 77 0.01
715 56 0.01
716 133 0.02
717 409 0.06
718 40 0.01
719 51 0.01
720 12 0.00
721 182 0.03
722 321 0.05
723 289 0.04
724 361 0.05
725 395 0.06
726 752 0.11
727 296 0.04
728 116 0.02
729 296 0.04
730 336 0.05
731 90 0.01
732 118 0.02
733 86 0.01
734 276 0.04
735 77 0.01
736 181 0.03
737 23 0.00
738 71 0.01
739 15 0.00
740 111 0.02
741 39 0.01
742 14 0.00
ACGTcount: A:0.17, C:0.11, G:0.05, T:0.68
Consensus pattern (716 bp):
CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTT
GTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTTCACACTTCCT
TGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACA
AATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTTGTTGCATTTTCTTT
TTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTGAATTTTTA
TATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTTC
TATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTATTTTTGATTCATTATTTTTTAT
TTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTATTTCTTT
CTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTATCGTTGTTTCTTAT
TTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTTCCTTTTAAATTTTTCTTTTTTTTTTT
A
Found at i:18067634 original size:7 final size:7
Alignment explanation
Indices: 18067624--18067693 Score: 59
Period size: 7 Copynumber: 9.6 Consensus size: 7
18067614 ATTTTTGTCT
18067624 TTTTTTA
1 TTTTTTA
18067631 TTTTTTA
1 TTTTTTA
*
18067638 TTTTTGA
1 TTTTTTA
**
18067645 TTCATTA
1 TTTTTTA
*
18067652 TTTTTGA
1 TTTTTTA
18067659 TTTTCTTA
1 TTTT-TTA
18067667 CTTTTTATA
1 -TTTTT-TA
*
18067676 TTTTATA
1 TTTTTTA
*
18067683 TTTTTTG
1 TTTTTTA
18067690 TTTT
1 TTTT
18067694 GCTTTAAAAT
Statistics
Matches: 49, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
7 36 0.73
8 7 0.14
9 6 0.12
ACGTcount: A:0.16, C:0.04, G:0.04, T:0.76
Consensus pattern (7 bp):
TTTTTTA
Found at i:18067728 original size:23 final size:23
Alignment explanation
Indices: 18067702--18067747 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
18067692 TTGCTTTAAA
* * *
18067702 ATTTTTTTCTTTTTTTATTTTTT
1 ATTTCTTTCTTTATTTATATTTT
18067725 ATTTCTTTCTTTATTTATATTTT
1 ATTTCTTTCTTTATTTATATTTT
18067748 CATAAATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.13, C:0.07, G:0.00, T:0.80
Consensus pattern (23 bp):
ATTTCTTTCTTTATTTATATTTT
Found at i:18067729 original size:19 final size:18
Alignment explanation
Indices: 18067703--18067740 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
18067693 TGCTTTAAAA
*
18067703 TTTTTTTCTTTTTTTATT
1 TTTTTTTCTTTCTTTATT
18067721 TTTTATTTCTTTCTTTATT
1 TTTT-TTTCTTTCTTTATT
18067740 T
1 T
18067741 ATATTTTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (18 bp):
TTTTTTTCTTTCTTTATT
Found at i:18067748 original size:19 final size:18
Alignment explanation
Indices: 18067706--18067748 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
18067696 TTTAAAATTT
* *
18067706 TTTTCTTTTTTTATTTTT
1 TTTTCTTTCTTTATTTTA
18067724 TATTTCTTTCTTTATTTATA
1 T-TTTCTTTCTTTATTT-TA
18067744 TTTTC
1 TTTTC
18067749 ATAAATTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 1 0.05
19 18 0.86
20 2 0.10
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTCTTTCTTTATTTTA
Found at i:18068359 original size:7 final size:7
Alignment explanation
Indices: 18068349--18068417 Score: 75
Period size: 7 Copynumber: 9.6 Consensus size: 7
18068339 ATTTTTGTCT
18068349 TTTTTTA
1 TTTTTTA
18068356 TTTTTTA
1 TTTTTTA
18068363 TTTTTTA
1 TTTTTTA
**
18068370 TTCATTA
1 TTTTTTA
18068377 TTTTTTA
1 TTTTTTA
18068384 TTTTCTTA
1 TTTT-TTA
*
18068392 CTTTTTA
1 TTTTTTA
*
18068399 TATTTTA
1 TTTTTTA
*
18068406 TATTTTTG
1 T-TTTTTA
18068414 TTTT
1 TTTT
18068418 GCTTTAATAT
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
7 40 0.78
8 11 0.22
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.78
Consensus pattern (7 bp):
TTTTTTA
Found at i:18068366 original size:15 final size:15
Alignment explanation
Indices: 18068348--18068463 Score: 67
Period size: 15 Copynumber: 7.3 Consensus size: 15
18068338 CATTTTTGTC
18068348 TTTTTTTATTTTTTA
1 TTTTTTTATTTTTTA
**
18068363 -TTTTTTATTCATTA
1 TTTTTTTATTTTTTA
18068377 -TTTTTTATTTTCTTA
1 TTTTTTTATTTT-TTA
* *
18068392 CTTTTTATATTTTATA
1 -TTTTTTTATTTTTTA
18068408 TTTTTGTT-TTGCTTTAATA
1 TTTTT-TTATT--TTT--TA
*
18068427 TTTTTTTCTTTTTTA
1 TTTTTTTATTTTTTA
* *
18068442 TTTCTTTCTTTATTTA
1 TTTTTTTATTT-TTTA
18068458 TGTTTT
1 T-TTTT
18068464 CATAAATTTT
Statistics
Matches: 80, Mismatches: 10, Indels: 20
0.73 0.09 0.18
Matches are distributed among these distances:
14 21 0.26
15 22 0.28
16 8 0.10
17 18 0.22
18 2 0.03
19 9 0.11
ACGTcount: A:0.15, C:0.06, G:0.03, T:0.77
Consensus pattern (15 bp):
TTTTTTTATTTTTTA
Found at i:18068602 original size:16 final size:16
Alignment explanation
Indices: 18068581--18068615 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
18068571 TTTCATGTGC
*
18068581 TTTCATATTTTCTTTG
1 TTTCATATTTTCTTCG
*
18068597 TTTCATTTTTTCTTCG
1 TTTCATATTTTCTTCG
18068613 TTT
1 TTT
18068616 AAAAATTTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.09, C:0.14, G:0.06, T:0.71
Consensus pattern (16 bp):
TTTCATATTTTCTTCG
Found at i:18069037 original size:7 final size:7
Alignment explanation
Indices: 18069027--18069096 Score: 50
Period size: 7 Copynumber: 9.6 Consensus size: 7
18069017 ATTTTTGTCT
18069027 TTTTTTA
1 TTTTTTA
18069034 TTTTTTA
1 TTTTTTA
***
18069041 AAATTTA
1 TTTTTTA
**
18069048 TTCATTA
1 TTTTTTA
18069055 TTTTTTA
1 TTTTTTA
18069062 TTTTCTTA
1 TTTT-TTA
18069070 CTTTTTATA
1 -TTTTT-TA
*
18069079 TTTTATA
1 TTTTTTA
*
18069086 TTTTTTG
1 TTTTTTA
18069093 TTTT
1 TTTT
18069097 GCTTTAATAT
Statistics
Matches: 48, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
7 34 0.71
8 8 0.17
9 6 0.12
ACGTcount: A:0.20, C:0.04, G:0.01, T:0.74
Consensus pattern (7 bp):
TTTTTTA
Found at i:18069627 original size:19 final size:17
Alignment explanation
Indices: 18069583--18069627 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
18069573 ATTCTTATAG
18069583 TTTTTTTTTTGTTGCAT
1 TTTTTTTTTTGTTGCAT
*
18069600 TTTCTTTTTTTGTTTTCAT
1 TTT-TTTTTTTG-TTGCAT
*
18069619 TTTTATTTT
1 TTTTTTTTT
18069628 GCATTAACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 3 0.12
18 13 0.54
19 8 0.33
ACGTcount: A:0.07, C:0.07, G:0.07, T:0.80
Consensus pattern (17 bp):
TTTTTTTTTTGTTGCAT
Found at i:18069777 original size:7 final size:7
Alignment explanation
Indices: 18069767--18069791 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
18069757 TTTTGTCTTT
18069767 TTTTATA
1 TTTTATA
18069774 TTTTATA
1 TTTTATA
18069781 TTTTATA
1 TTTTATA
18069788 TTTT
1 TTTT
18069792 TTTTTGCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTATA
Found at i:18069783 original size:25 final size:25
Alignment explanation
Indices: 18069755--18069819 Score: 62
Period size: 25 Copynumber: 2.6 Consensus size: 25
18069745 GTTTCATTTC
* *
18069755 ATTTTTGTCTTTTTTTAT-ATTTTAT
1 ATTTTTATCTTTTTTT-TGATTTAAT
*
18069780 ATTTTATAT-TTTTTTTTGCTTTAAT
1 ATTTT-TATCTTTTTTTTGATTTAAT
*
18069805 ATTTTTTTCTTTTTT
1 ATTTTTATCTTTTTT
18069820 ATTTCTTTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
24 3 0.09
25 28 0.85
26 2 0.06
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.77
Consensus pattern (25 bp):
ATTTTTATCTTTTTTTTGATTTAAT
Found at i:18069822 original size:15 final size:15
Alignment explanation
Indices: 18069790--18069842 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
18069780 ATTTTATATT
**
18069790 TTTTTTTGCTTTAATA
1 TTTTTTT-CTTTTTTA
18069806 TTTTTTTCTTTTTTA
1 TTTTTTTCTTTTTTA
*
18069821 TTTCTTTCTTTATTTA
1 TTTTTTTCTTT-TTTA
18069837 TATTTT
1 T-TTTT
18069843 CATAAATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
15 16 0.52
16 12 0.39
17 3 0.10
ACGTcount: A:0.13, C:0.08, G:0.02, T:0.77
Consensus pattern (15 bp):
TTTTTTTCTTTTTTA
Found at i:18069960 original size:697 final size:703
Alignment explanation
Indices: 18069072--18072158 Score: 4667
Period size: 730 Copynumber: 4.3 Consensus size: 703
18069062 TTTTCTTACT
*
18069072 TTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTTCTTTTTTTATTTCTTTCTTTATT
1 TTTTATATTTTATATTTTTTTTTTTGCTTTAATA-TTTTTTTCTTTTTTTATTTCTTTCTTTATT
*
18069137 TATATTTTCATAAATTTTTATAATGTTTTTGG-TTTTTTTCTTTTTCTTTTTCTTTTTTTATTTA
65 TATATTTTCATAAATTTTTATAATG-TTTTGGATTTTTTTATTTTTC-TTTTCTTTTTTTATTTA
18069201 TCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTTAAATTT
128 TCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTTAAATTT
*
18069266 TTCTTTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTGTCT
193 TTCTTTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCT
* *
18069331 TCATTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTTA-
258 TCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCAT
*
18069395 TTTTTTATTTCTTTCTTATTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCA-T
323 TTTTTTATTT-TTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATT
18069459 TTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTT
387 TTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTT
* * * *
18069524 TTCTTAATTTTTTCGCAAATTTTTTTTTATTTTTTGTTTTCATTTTGAAATTCTTATAGTTTTTT
452 TTCTTAATTTTTTCACAAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAG-TTTTT
*
18069589 TTTTGTTGCATTTTCTTTTTTTGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTT
516 TTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTT
* *
18069654 TTTATCCTTGAGTTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAA-TTTTTGTATTT
581 TTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTT
18069718 TTTCAAATATTTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTC-TTTTT-TTA-TA
646 TTTCAAATA-TTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTATTATTA
18069774 TTTTATATTTTATA--TTTTTTTTTGCTTTAATATTTTTTTC-TTTTTTATTTCTTTCTTTATTT
1 TTTTATATTTTATATTTTTTTTTTTGCTTTAATATTTTTTTCTTTTTTTATTTCTTTCTTTATTT
*
18069836 ATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTATTCTTTTTTTATTTATCG
66 ATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTCTTTTTTTATTTATCG
*
18069901 TTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTTCCTTTTAAATTTTTC
131 TTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTTAAATTTTTC
* *
18069966 TTTTTTTTTTTACTTATTTTTTTATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTGTTCG
196 TTTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCG
18070031 TTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCA-TTT
261 TTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTT
18070095 TTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTT
326 TTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTT
18070160 TTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCT
391 TTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCT
18070225 TAATTTTTTCACAAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTTG
456 TAATTTTTTCACAAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTTG
18070290 TTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGT
521 TTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGT
18070355 CCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCA
586 CCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCA
18070420 AATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTATTTTTATTTTTGATTCAT
651 AATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTC-----------T-TTTTT-ATT-AT
18070485 TA
702 TA
18070487 TTTTTATTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATA-TTTTTTC-TTTTTT
1 -TTTTA------TA---TTT-TA---TAT-TTTTTT-TTTTGCTTTAATATTTTTTTCTTTTTTT
18070550 ATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTT
50 ATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTT
18070615 CTTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTT
115 CTTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTT
18070680 TCCTTTTAAATTTTTCTTTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTT
180 TCCTTTTAAATTTTTCTTTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTT
18070745 TCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCATATT
245 TCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCATATT
18070810 TTTGCCTCTTCATTTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTT
310 TTTGCCTCTTCATTTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTT
18070875 CTTGTTTCCA-TTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTC
375 CTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTC
18070939 ATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTC
440 ATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTC
18071004 TTATAG-TTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTC
505 TTATAGTTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTC
18071068 TTTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAAT
570 TTTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAAT
18071133 TTTTTGTATTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTAT
635 TTTTTGTATTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTC---------
18071198 TTTTTATTTTTGATTCATTATTTTTGA
691 -------TTTT--TT-ATTA---TT-A
18071225 TTTTATTACTTTTTATATTTTTTATTTTTTATTTTGCTTTAATATTTTTTTCTTTTTTTATTTCT
1 TTTTA-TA--TTTTATA-----T-TTTTTT-TTTTGCTTTAATATTTTTTTCTTTTTTTATTTCT
*
18071290 TTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTCCTTTTCTTTTT
56 TTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTCTTTTT
*
18071355 TTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACCCCTTTTCCTTT
121 TTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTT
18071420 TAAATTTTTC-TTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTT
186 TAAATTTTTCTTTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTT
*
18071484 TTTTTCTTCGTTTT--AAA----T-----ATATTTTTTCTTTTTATTTTATTTCATATTTTTGCC
251 TTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCC
* *
18071538 TTTTCATTTTTTTATTTTTTCTTGTTTTTTTAATTTTTTTCGCAAAATT-TTTTTATTTCTTGTT
316 TCTTCATTTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTT
18071602 TCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTT
381 TCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTT
18071667 ATTCTTTTCTTAATTTTTTCACAAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAG
446 ATTCTTTTCTTAATTTTTTCACAAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAG
18071732 TTTTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTT
511 --TTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTT
18071797 TTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTT
574 TTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTT
* *
18071862 TGTATTTTTTCAAAT-TTTTTTTCTATTTTCTCGTTTTATTTCATTTTTGTCTTTTTTTATTTTT
639 TGTATTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTC-TTTTTTA-TTAT
18071926 TA
702 TA
* *
18071928 TTTTTGATTCATTATTTTTGATTTTCTTACTTTTTATG-TTTTATATTTTTTGT-TTTGCTTTAA
1 -TTTT-A-T-A-T-TTTAT-A-TTT-TT--TTTTT-TGCTTTAATATTTTTT-TCTTT--TTT--
* * *** * ** * *
18071991 TATTT-TTTCTTT-TTTTTAATTTTTTATTTCTTTCTTTATTTATATTTTCTTAAATTTTTATAA
49 TATTTCTTTCTTTATTTAT-A-TTTTCA-TAAATT-TTTA--TA-ATGTT-TTGGATTTTTTTAT
* *** * *
18072054 TGTT-TTGGATTTTTTTATTTATCGTTGTTTCTTTTTTTCTATTGTATTTTTATAATTTATCATT
106 TTTTCTTTTCTTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATT
18072118 AACTCCTTTTCCTTTTAAATTTTTCTTTTTTTTTTTTACTT
171 AACTCCTTTTCCTTTTAAATTTTTC-TTTTTTTTTTTACTT
18072159 TTTACGGTTC
Statistics
Matches: 2245, Mismatches: 54, Indels: 159
0.91 0.02 0.06
Matches are distributed among these distances:
696 207 0.09
697 361 0.16
698 59 0.03
699 8 0.00
700 17 0.01
702 16 0.01
703 5 0.00
704 24 0.01
705 10 0.00
706 13 0.01
707 13 0.01
708 10 0.00
709 13 0.01
710 4 0.00
711 2 0.00
712 3 0.00
713 85 0.04
714 17 0.01
715 14 0.01
720 2 0.00
721 19 0.01
722 207 0.09
723 3 0.00
724 37 0.02
725 142 0.06
727 5 0.00
729 179 0.08
730 413 0.18
731 82 0.04
732 24 0.01
733 78 0.03
734 160 0.07
735 5 0.00
737 7 0.00
738 1 0.00
ACGTcount: A:0.17, C:0.11, G:0.05, T:0.68
Consensus pattern (703 bp):
TTTTATATTTTATATTTTTTTTTTTGCTTTAATATTTTTTTCTTTTTTTATTTCTTTCTTTATTT
ATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTCTTTTTTTATTTATCG
TTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTTAAATTTTTC
TTTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCG
TTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTT
TTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTT
TTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCT
TAATTTTTTCACAAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTTG
TTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGT
CCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCA
AATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTATTATTA
Found at i:18070470 original size:7 final size:7
Alignment explanation
Indices: 18070460--18070572 Score: 52
Period size: 7 Copynumber: 15.7 Consensus size: 7
18070450 CATTTTTGTC
18070460 TTTTTTA
1 TTTTTTA
18070467 -TTTTTA
1 TTTTTTA
*
18070473 TTTTTGA
1 TTTTTTA
**
18070480 TTCATTA
1 TTTTTTA
18070487 -TTTTTA
1 TTTTTTA
18070493 TTTTCTTA
1 TTTT-TTA
18070501 CTTTTTATA
1 -TTTTT-TA
*
18070510 TTTTATA
1 TTTTTTA
18070517 TTTTTT-
1 TTTTTTA
* **
18070523 GTTTTGC
1 TTTTTTA
**
18070530 TTTAATA
1 TTTTTTA
*
18070537 TTTTTTC
1 TTTTTTA
18070544 TTTTTTA
1 TTTTTTA
*
18070551 TTTCTTTC
1 TTT-TTTA
18070559 TTTATTTA
1 TTT-TTTA
18070567 TATTTT
1 T-TTTT
18070573 CATAAATTTT
Statistics
Matches: 76, Mismatches: 22, Indels: 15
0.67 0.19 0.13
Matches are distributed among these distances:
6 14 0.18
7 34 0.45
8 20 0.26
9 8 0.11
ACGTcount: A:0.16, C:0.06, G:0.03, T:0.75
Consensus pattern (7 bp):
TTTTTTA
Found at i:18070558 original size:15 final size:15
Alignment explanation
Indices: 18070535--18070573 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
18070525 TTTGCTTTAA
18070535 TATTTTTTCTTT-TT
1 TATTTTTTCTTTATT
18070549 TATTTCTTTCTTTATT
1 TATTT-TTTCTTTATT
*
18070565 TATATTTTC
1 TATTTTTTC
18070574 ATAAATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 5 0.23
15 11 0.50
16 6 0.27
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (15 bp):
TATTTTTTCTTTATT
Found at i:18071200 original size:7 final size:7
Alignment explanation
Indices: 18071190--18071259 Score: 77
Period size: 7 Copynumber: 9.6 Consensus size: 7
18071180 ATTTTTGTCT
18071190 TTTTTTA
1 TTTTTTA
18071197 TTTTTTA
1 TTTTTTA
*
18071204 TTTTTGA
1 TTTTTTA
**
18071211 TTCATTA
1 TTTTTTA
*
18071218 TTTTTGA
1 TTTTTTA
18071225 TTTTATTA
1 TTTT-TTA
18071233 CTTTTTATA
1 -TTTTT-TA
18071242 TTTTTTA
1 TTTTTTA
18071249 TTTTTTA
1 TTTTTTA
18071256 TTTT
1 TTTT
18071260 GCTTTAATAT
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
7 38 0.73
8 8 0.15
9 6 0.12
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.77
Consensus pattern (7 bp):
TTTTTTA
Found at i:18071898 original size:19 final size:17
Alignment explanation
Indices: 18071876--18071925 Score: 50
Period size: 16 Copynumber: 2.9 Consensus size: 17
18071866 TTTTTTCAAA
18071876 TTTTTTTTCTATTTTCTCG
1 TTTTTTTTCTATTTT-T-G
*
18071895 TTTTATTTC-ATTTTTG
1 TTTTTTTTCTATTTTTG
*
18071911 TCTTTTTT-TATTTTT
1 TTTTTTTTCTATTTTT
18071926 TATTTTTGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
16 13 0.48
17 1 0.04
18 5 0.19
19 8 0.30
ACGTcount: A:0.08, C:0.10, G:0.04, T:0.78
Consensus pattern (17 bp):
TTTTTTTTCTATTTTTG
Found at i:18071924 original size:7 final size:7
Alignment explanation
Indices: 18071914--18071983 Score: 59
Period size: 7 Copynumber: 9.6 Consensus size: 7
18071904 ATTTTTGTCT
18071914 TTTTTTA
1 TTTTTTA
18071921 TTTTTTA
1 TTTTTTA
*
18071928 TTTTTGA
1 TTTTTTA
**
18071935 TTCATTA
1 TTTTTTA
*
18071942 TTTTTGA
1 TTTTTTA
18071949 TTTTCTTA
1 TTTT-TTA
*
18071957 CTTTTTA
1 TTTTTTA
18071964 TGTTTTATA
1 T-TTTT-TA
*
18071973 TTTTTTG
1 TTTTTTA
18071980 TTTT
1 TTTT
18071984 GCTTTAATAT
Statistics
Matches: 49, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
7 33 0.67
8 13 0.27
9 3 0.06
ACGTcount: A:0.14, C:0.04, G:0.06, T:0.76
Consensus pattern (7 bp):
TTTTTTA
Found at i:18072008 original size:19 final size:20
Alignment explanation
Indices: 18071964--18072015 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
18071954 TTACTTTTTA
*
18071964 TGTTTT-ATATTTTTTGTTT
1 TGTTTTAATATTTTTTCTTT
*
18071983 TGCTTTAATATTTTTTCTTT
1 TGTTTTAATATTTTTTCTTT
18072003 T-TTTTAAT-TTTTT
1 TGTTTTAATATTTTT
18072016 ATTTCTTTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
18 5 0.17
19 11 0.38
20 13 0.45
ACGTcount: A:0.13, C:0.04, G:0.06, T:0.77
Consensus pattern (20 bp):
TGTTTTAATATTTTTTCTTT
Found at i:18072032 original size:24 final size:25
Alignment explanation
Indices: 18071991--18072038 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
18071981 TTTGCTTTAA
*
18071991 TATTTTTTCTTTTTTTTA-ATTTTT
1 TATTTTTTCTTTTATTTATATTTTT
18072015 TATTTCTTTC-TTTATTTATATTTT
1 TATTT-TTTCTTTTATTTATATTTT
18072039 CTTAAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (25 bp):
TATTTTTTCTTTTATTTATATTTTT
Found at i:18072037 original size:25 final size:24
Alignment explanation
Indices: 18071991--18072038 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
18071981 TTTGCTTTAA
*
18071991 TATTTTTTCTTTTTTTTAATTTTT
1 TATTTTTTCTTTTTTATAATTTTT
18072015 TATTTCTTTCTTTATTTAT-ATTTT
1 TATTT-TTTCTTT-TTTATAATTTT
18072039 CTTAAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 5 0.24
25 12 0.57
26 4 0.19
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (24 bp):
TATTTTTTCTTTTTTATAATTTTT
Found at i:18072640 original size:26 final size:26
Alignment explanation
Indices: 18072604--18072656 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18072594 CTGGTTTGAT
18072604 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
18072630 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
18072656 C
1 C
18072657 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:18075301 original size:26 final size:26
Alignment explanation
Indices: 18075272--18075324 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18075262 CTGATCCGAT
18075272 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* * *
18075298 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
18075324 C
1 C
18075325 CTAAGTGTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:18076700 original size:893 final size:889
Alignment explanation
Indices: 18072155--18078843 Score: 7927
Period size: 893 Copynumber: 7.6 Consensus size: 889
18072145 TTTTTTTTTT
* *
18072155 ACTTTTTACGGTTCGGGATTTTTTTAAAATTCTTTT-GAAAGGAGTTTTGGCCCCAAACTTGGTA
1 ACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTTGGAAA-GAGTTTTGGCCCCAAACTTGGTA
* * * * *
18072219 GACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCCAAAAACTTGAGGTGTACAA
64 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * * *
18072284 GTTTTTGTAACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAACAAAT
129 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
18072349 TTGTAAAATCTCAAATACTCTTTAAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
194 CTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
18072414 CCAATATAAGGGCTAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCTCC
258 -CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCT-GGCCC-CC
** * * *
18072479 CGATCGTCGGAACCCCAATACCG-TCGATCAGG---T------T-CTCCGACGATGGTGCCCTGA
320 CGATCACCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCACGATGCTCCGACGATGGTGCCCCGA
* * * * *
18072533 CGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTCGGTCTGG
384 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-ATCCGA
*** * *
18072598 TTTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGT
448 TCCAATCTTAGATCGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGT
* * * ** * *
18072663 CAACCCATGAAATGAGCGTGCAGGCACTCAACCGGCCAGAGGGGCGGGATGCGTAAGCTGGGGAT
512 CAACCCACGAAACGAGCGTGC-GGCGCTCAGTC-GCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
** * * ** * * ** * * * *
18072728 CGACCGGGTCCCCTTCCGCATGCTACCGATCTTGTTGCCGTAACCCTCGGTCTGATCCGATCTTA
575 CGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTA
* *
18072793 GACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAC-GA----GCGGACGGGCACTACG
640 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGAGCTGGCGGGCGGGCACTACG
* *
18072853 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATC
705 CCGGCCAGAGAGA-GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* ** *
18072918 TTCATATTTCTGCGTACCAATGCCATTTTTATTTCTTGTAAATTCATACAACGGTCCCTTAAGCC
769 TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
18072983 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
834 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAA
* * *
18073039 ACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
1 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGA
*
18073104 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGA
66 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
18073169 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACCGGCAGCAAACCT
131 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * * *
18073234 GTAAAATCTCAAAAGCTCTTTAAAGGGGTGCGAGTTCTCGAGGTTTGTTGAGGCATAGGGGGCCA
196 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CA
* * *
18073299 ATATAAGGGCCAAGTACCAACACCCTTCGCACATCCTGTGCGCACACCCCCCTCGGCCCGCCCGA
260 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCT-GGCCC-CCCGA
* * * * *
18073364 TCACTGGAACCCCAATGTCGCCGGTCAGGTTCTCTGACGATGCTCC-AGCGATGGTGCCCCGGTC
323 TCACCGGAACCCCAATGCCGCTGGTCAGGTTCTC-CACGATGCTCCGA-CGATGGTGCCCC-GAC
** *
18073428 -AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGTAA-CC-C-T-CG---
385 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCATCCGATC
*
18073485 --------GTTC-GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
450 CAATCTTAGATCGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCA
* * * * *
18073532 ACCCATGAAATGAGCATGCGG-GCAATCAGTTGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATC
514 ACCCACGAAACGAGCGTGCGGCGC--TCAG-TCGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
** * *
18073596 GGTCGGGTCCCCCTCTGGGTGCTGTCGATCCTGCTACCGCAACCCTC-GATCCGGTCTGATCTTA
576 GGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCCACAACCCTCAG-TCCGGTCTGATCTTA
* *
18073660 GACTAGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATAATCA-AG-TGGGCGGGCAGGCA
640 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-CAGAGCT-GGCGGGC--G--
* * **
18073723 GGCACTACGCCTGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTTAGTTT
696 GGCACTACGCCGGCCAGAGAGA-GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
18073788 AGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
760 AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* **
18073853 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
825 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAA
* * * * * *
18073918 ACTTTTTACGATTCAAGATTTTTTTTTAAAATTTTTTGGGAAGGAGTTTTGGCCCAAAAATTGGT
1 ACTTTTTACGGTTCGAGA---TTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGT
* * * * *
18073983 AGACATGATCCTTGTATTTTTGTTGGTATGCACAGAAAAATTCAACTAAAAAATCGAAGTGTACA
63 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
18074048 AGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTACTGGCAGCAAA
128 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
18074113 CCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGG
193 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
18074178 CCAATATAAGGGCCAAGTACCAGCACCCATCGCA-ATCATGTGCGCACA-CCCCC-GCCCCCCCG
258 -CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCG
** * * *
18074240 ATCGTCGAAACCCCAATGTCG-TCGGTCAGGTTCTTCAGCGATGCTCCGACGATGGTG-CCCGAC
322 ATCACCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCA-CGATGCTCCGACGATGGTGCCCCGAC
* *
18074303 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGTATGTGCTGCCACAACCCTCATTCCGAT
385 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCA-TCCGAT
* * * *
18074368 CCGATCTTAGA-CTAGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTTTGTATGCCTAAGT
449 CCAATCTTAGATC-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC-TCGTATGCCTAAGT
* * *
18074432 TAACCCACGAAACGAGCGTGCGGGCGCTTAGTCGACCAGAGGGGTGGGATGCGCAAGCCGGGGAT
512 CAACCCACGAAACGAGCGTGC-GGCGCTCAGTCG-CCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * *
18074497 CGGTCGGGTCCCCCTTTGCATGCTG-CTGATCTTGCTGCCACAACCCTCGGTCTGGTCCGATCTT
575 CGGTCGGGTCCCCCTCTGCATGCTGTC-GATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTT
* * *
18074561 AGACTGGGAATGCACTCCGTATGTCTAAGCCAATCGACGAAAC-GAGCAAGTGGGCGAGCGATCG
639 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGAGC---T-GGCG-G-G--CG
* * * *
18074625 AGCACTATGCCGGCCAAAGAGTCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
696 GGCACTACGCCGGCCAGAGAG-AGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
18074690 AGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAGATTCATACAATGGTC
760 AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * **
18074755 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGACTTTCAAA
825 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAA
* * * *
18074820 ACTTTTTGCGGTTTGGGATTTTTT-AAA-TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAG
1 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAA-GAGTTTTGGCCCCAAACTTGGTAG
18074883 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAACTCGAAGTGTACAAG
65 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
18074947 ATTTTGTGACCATTTCAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
130 ATTTTGTGACCATTT-GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
18075012 CTGTAAAATGTCAAATGCTCTTTTAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGC
194 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
18075077 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCGCA-CCCCCT-GCCCCCCCAT
259 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCGAT
* * ** * * * **
18075140 CGCCGGAATCGTAATGCCG-TCGGTCAGGTTCTCTGACAATGCTCCGATGATGGTGCCCCGGTGA
324 CACCGGAACCCCAATGCCGCT-GGTCAGGTTCTC-CACGATGCTCCGACGATGGTGCCCCGACGA
* * * * *
18075204 AGAAAAATGTGGCACCAGCAAATGCCCGAGCCCAGCATGTGTTGCCGCAACCCTCGGTCTGATCC
387 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-ATCCGATCC
* * * **
18075269 GATCTTA-AACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTGT
451 AATCTTAGATC-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC-GTATGCCTAAGTCA
* * * *
18075333 ACCCACGAAACAAGCATGCGGGCGCTCAGTCGACTAGAGGGGCGGGATGCGCAAGTCGGGGATCG
514 ACCCACGAAACGAGCGTGC-GGCGCTCAGTCG-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * *
18075398 GTCGGGTCTCCCTCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGA
577 GTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGA
* * * *
18075463 CTGGGAATGAACTTCGTATGCCTAAGCCAACCGGCAAAAC-GAGC-GGAGGGCGGGCACTACG-C
642 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGAGCTGGCGGGCGGGCACTACGCC
* * * *
18075525 AGACAGAGAGAGGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
707 GGCCAGAGAGAGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
18075590 ATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG-CTGT
772 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT-T
*
18075654 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCA-ACGATTTTTGAA
836 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATA--ATTTTTGAA
** * *
18075709 A-TTTTTAACGGTTCGAGATTTTTTTAAAA-TTTTTTCAAAAGGATTTTTGGCCCCAAACTTTGT
1 ACTTTTT-ACGGTTCGAGA-TTTTTTAAAATTTTTTTGGAAA-GAGTTTTGGCCCCAAACTTGGT
* * *
18075772 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGTTAAAAACTCGAAGTGTAGA
63 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
18075837 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
128 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
18075902 CCTGTAAAATCTCAAATGCTCTTTCAGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
193 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
18075967 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCTGGCCCCCCGA
258 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCGA
* * *
18076032 TCACCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGATGATGCTCCGACGATGGCGCCCCGACAA
323 TCACCGGAACCCCAATGCCGCTGGTCAGGTTCTCC-ACGATGCTCCGACGATGGTGCCCCGACGA
* * * * *
18076097 AGAAAAATGCGACACCAGCACATGCCCGAGCCTAACATGTACTACCGCAACCCTCGATCCGATCC
387 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-ATCCGATCC
* * *
18076162 AATCTTAGATCGAGAATGAACTCCATTTGCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAAC
451 AATCTTAGATCGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAAC
* * * * *
18076227 CCACGAAAACAAGCGTGCGGCGCTCAATCTGCCAGAGGGGCAGGATGCCCAACCCGGGGATC-GT
516 CCACG-AAACGAGCGTGCGGCGCTCAGTC-GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
* * * * * ** * * *
18076291 CGGGTCCTCATCTGTATGCTGTCAATCCCTACTATCGCAACCCTCAGTCTGGTCTGATATTAGAC
579 CGGGTCCCCCTCTGCATGCTGTCGAT-CCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGAC
18076356 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-AGAGCTGGCGGGCGGGCACTACGCCG
643 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGAGCTGGCGGGCGGGCACTACGCCG
* * *
18076420 GCCCAAAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGT-TGTGGGTCTAGGCACATCTT
708 G-CCAGAGAGA-GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
** *
18076484 CATATTTCTATGTGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
771 CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
*
18076549 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATAATTTTTGAA
836 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAA
18076603 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGA
1 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGA
* * * * *
18076668 CGTGATCCTTGTATTTTTTTTGGCAAGCACAAAAAAACTCAGCTAAAAAATCAAAGTGTACAAGA
66 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
18076733 TTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCT
131 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
18076798 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
196 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CA
***
18076863 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAACCCCCCCGATC
260 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCGATC
* *
18076928 ATCGGAACCCCAATGCCGTCT-GTCAGGTTCT-C-C---G----G-CGATGGTGCCCTGACGAAG
325 ACCGGAACCCCAATGCCG-CTGGTCAGGTTCTCCACGATGCTCCGACGATGGTGCCCCGACGAAG
* * *
18076982 AAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGTTGCCGCAACCCTCA---G-T-C---
389 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCATCCGATCCAAT
*
18077039 C---GATC-----TG-A-----T-T--TTAGATTGGGAATGAACTCGTATGCCTAAGTCAACCCA
454 CTTAGATCGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACCCA
* * * ** * * * *
18077087 CGAAACGATCGTGTGGGCGTTCAACCGGCCAGAGGGGTGGGATGCGCAAGCTGGGGATTGGCCGG
519 CGAAACGAGCGTG-CGGCGCTCAGTC-GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGG
* * * * * * *
18077152 GTCCCCCTCTACGTGCTGCCAATCCTACTGCCATAACCCTCAGTCTGGTCTGATCTTAGACTGGG
582 GTCCCCCTCTGCATGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGGG
* * *
18077217 AATGAACTCCGTCTGCCTAAGCCAAGCAACGAAACA-A--------GCGGG--C-A-G-C-GCC-
647 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGAGCTGGCGGGCGGGCACTACGCCGGCCA
*
18077266 ---------A--CGCAAGCTGTGGATCGATAGGGT-GTAGGT-GGTTTAGGCACATCTTCATATT
712 GAGAGAGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * *
18077318 TTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTG
777 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * *
18077383 AAGTTTCATGGCAAGACGACTCCTTTTCTATTGTTCACAATTTTTGAA
842 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAA
* * * *
18077431 ACTTTTTGCGGTTTTG-GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGACCCAAACTTGGTAG
1 ACTTTTTACGG-TTCGAGATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAG
* * *
18077495 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAATCTTGAAGTGTACAAG
65 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
18077560 ATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
130 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * **
18077625 TGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAAAGGGCA
195 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCA
* * * *
18077690 ATATAAAGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCCGACCCCCCGAT
260 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCTGGCCCCCCGAT
*** * **
18077755 CGTTGGAACCCCAATGCCGCTGATCAGGTTCTCCAGCGATGCTCCGACGAATGGTGCCCCGGTGA
324 CACCGGAACCCCAATGCCGCTGGTCAGGTTCTCCA-CGATGCTCCGACG-ATGGTGCCCCGACGA
* * * * * *
18077820 AGAAAAATGTGGCACCAGCACATGCCCAAGCCCGGCATGTGCTGCCGCAACCCTCGGTTCGGTCC
387 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-ATCCGATCC
* * *
18077885 AATCTTAGATTGGGAATGAACTCCGTATGCCTA-A----GAA--AA--C-----CC--A-TGAA-
451 AATCTTAGATCGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAAC
* * * * *
18077932 --ACG-AGC-A-TGTG-GGTGCTCAGTCGGCCAGAGGGGCGGGATACGCAAGCCGGGGATCGGTT
516 CCACGAAACGAGCGTGCGGCGCTCAGTC-GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC
* * ** **
18077991 AGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCTGCAACCCTTGGTCCGGTCTGATCTTAGACTG
580 GGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTG
* * * * * *
18078056 GGAATGAACTCCGTATACCTAAGCCAACTGACCAAACGAGCCGGCGGGCGGGCGGGCGGGCGCTA
645 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A------GAGCTGGCGGGCGGGCACTA
* * * * * * *
18078121 CACCTGCCAGAGATACGGGATTCGCAAGTCATGGATCGATAGGGTGGTCA-GTGAGTTTAGGCAC
703 CGCCGGCCAGAGAGA-GGGATGCGCAAGCCGTGGATCGATAGGGTGGT-AGGTGGGTTTAGGCAC
* *
18078185 ATCTTCATATTTCTCCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
766 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
18078250 GCCATCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAA-TTTTGAA
831 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT-AATTTTTGAA
* ** * *
18078309 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTTGTAGA
1 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGA
* ** * * *
18078374 CGTGATCCTTGTATTTTTTTTGGTGTGCACAAAAACATTCAGCTAAAAACTTGAAGTGTAGAAGA
66 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
18078439 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTGACACTTTAATGGCTACTGGCAGCAAACCT
131 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
18078504 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAA
196 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAA
*
18078569 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-AACCCCCTGGCCCCCCGATCA
261 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCGATCA
* ** * * *
18078633 CCGGAACCCCAATGCCGCTGGTCAGTTTCTTTGACGATGCTTCGGCAATGGTTG-CCCGACGAAG
326 CCGGAACCCCAATGCCGCTGGTCAGGTTC-TCCACGATGCTCCGACGATGG-TGCCCCGACGAAG
* * * *
18078697 AAAAATGCGGCACCAACACATGCCCGAGCCCAACATGTACTACCGCAACCCTCAGTCCGATCCAA
389 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCA-TCCGATCCAA
* * * * *
18078762 TCTTAGATCGGGAATGAACTCTGTATGCCTAGACTGGGAATG-ACTCCGTATACCTAAGCCAATC
453 TCTTAGATCGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACC
* * *
18078826 GACTAAACGAGCGGGCGG
517 CACGAAACGAGCGTGCGG
18078844 GCGGGCAGGC
Statistics
Matches: 5032, Mismatches: 542, Indels: 447
0.84 0.09 0.07
Matches are distributed among these distances:
827 48 0.01
828 405 0.08
829 28 0.01
831 2 0.00
834 1 0.00
838 1 0.00
839 2 0.00
840 63 0.01
841 123 0.02
842 3 0.00
843 4 0.00
844 3 0.00
845 4 0.00
846 5 0.00
847 1 0.00
849 9 0.00
850 1 0.00
852 5 0.00
856 9 0.00
857 151 0.03
858 23 0.00
859 4 0.00
860 2 0.00
861 3 0.00
862 1 0.00
863 4 0.00
864 1 0.00
865 3 0.00
866 7 0.00
867 166 0.03
868 2 0.00
869 2 0.00
870 2 0.00
871 8 0.00
874 3 0.00
875 102 0.02
876 126 0.03
877 65 0.01
878 410 0.08
879 201 0.04
880 9 0.00
881 16 0.00
882 371 0.07
883 239 0.05
884 21 0.00
885 1 0.00
887 2 0.00
888 157 0.03
889 26 0.01
890 15 0.00
891 257 0.05
892 172 0.03
893 460 0.09
894 130 0.03
895 134 0.03
896 35 0.01
897 74 0.01
898 252 0.05
899 282 0.06
900 3 0.00
901 5 0.00
902 358 0.07
903 5 0.00
904 4 0.00
906 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCGATCA
CCGGAACCCCAATGCCGCTGGTCAGGTTCTCCACGATGCTCCGACGATGGTGCCCCGACGAAGAA
AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCATCCGATCCAATCT
TAGATCGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACCCACG
AAACGAGCGTGCGGCGCTCAGTCGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCC
CCCTCTGCATGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATG
AACTCCGTATGCCTAAGCCAACCGACGAAACAGAGCTGGCGGGCGGGCACTACGCCGGCCAGAGA
GAGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
TTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAA
Found at i:18082209 original size:26 final size:26
Alignment explanation
Indices: 18082180--18082230 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18082170 CTGATCCGAT
18082180 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
18082206 CTTAGGCTGGGAATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCTGTAT
18082231 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18082424 original size:4 final size:4
Alignment explanation
Indices: 18082417--18082446 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
18082407 AAATGAGCGA
*
18082417 GCGG GCGG GCGG GCGG ACGG GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
18082447 ACTACGTTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.03, C:0.27, G:0.70, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:18083105 original size:26 final size:26
Alignment explanation
Indices: 18083069--18083119 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18083059 CCGATCCGAT
*
18083069 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18083095 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
18083120 CCCTAAGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18083971 original size:25 final size:27
Alignment explanation
Indices: 18083937--18083989 Score: 92
Period size: 25 Copynumber: 2.0 Consensus size: 27
18083927 CCGATCTGAT
18083937 CTTAGACTGGGAATG-AACT-CGTATG
1 CTTAGACTGGGAATGAAACTCCGTATG
18083962 CTTAGACTGGGAATGAAACTCCGTATG
1 CTTAGACTGGGAATGAAACTCCGTATG
18083989 C
1 C
18083990 CCTAAGCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 15 0.58
26 4 0.15
27 7 0.27
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (27 bp):
CTTAGACTGGGAATGAAACTCCGTATG
Found at i:18085749 original size:26 final size:26
Alignment explanation
Indices: 18085720--18085772 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18085710 CTGGTCCGAT
*
18085720 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
*
18085746 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
18085772 C
1 C
18085773 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCGTATG
Found at i:18086136 original size:895 final size:893
Alignment explanation
Indices: 18078791--18086952 Score: 9728
Period size: 895 Copynumber: 9.2 Consensus size: 893
18078781 TCTGTATGCC
* * * *
18078791 TAGACTGGGAATG-ACTCCGTATACCTAAGCCAATCGACTAAACGAGCGGGCGGGCGGGCAGGCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGC--G--GGCG
*
18078855 GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
62 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
18078920 AGGCACATCTTCAAATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCTTACAATGGTC
127 AGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * **
18078985 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAA
192 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* ** *
18079050 ACCTTTTACGGTTCATGATTTTTTGAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGA
257 A-CTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGA
* * *
18079115 CATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTATACAAGA
321 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
18079180 TTTTGTGACGATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
386 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * *
18079245 GTAAAATCTCAAATGCTCTTTAAGGTGGAGTGAGTTCTGAAGGTTTGATGAGGGATAGGGGCCCA
451 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
* *
18079310 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGTCCCCCCGATC
516 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
* * *
18079375 GTCGGAACCCCAATGCCGTCGGTCA-GATTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAA
581 GTCGGAACCCCAATGCTGCCGGTCAGGA-TCTCCGGCGATGCTCCGGCGATGGTGCCCCG-CGAA
* * * * * * *
18079439 GAAAAATGAGGCCCCAGCACATGCCCGACCCCAGCATTTGCTGCCACAACCCTCGTTTCGGTCCG
644 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCG
*
18079504 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATCGAACTAATGAACTCGTATG--T
709 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAAT-GAAC---T---C-CGTATGCCT
* * * * *
18079567 AAGTCAACCCACGAAATGAGCCTAGGGGCGCTCAGCCGGCCAGAGGGGCGGGATACGCAAGCTGT
766 AAGTCAACCCACGAAACGTG-C---GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * *
18079632 GGATCGG-CTGGGTCCCCCTCTACATGCTGCCAATCTTGCTACCGTAACCCTCAGTCTGGTCTGA
827 GGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGA
18079696 TCT
891 TCT
* * *
18079699 TGGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GCGGGCAGGCGGGCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCA
* * * *
18079763 CTACGTCGGCCAGAGAGACGGGATACGCAAGGCGTGGATCGATTGGGTGGTAGGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
** *
18079828 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTT
131 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
18079893 AAGCCTTCATGTAAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACT-ATTTTTGAAACT
196 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTTTGAAAC-
* * *
18079957 TTTTGCGGTTCGGTATTTTTCAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
259 TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGT
* * *
18080022 GATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTTAGCTAAAAACTTGAATTGTACAAGATTT
324 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
18080086 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACATTAAAGGCTAC-AGCAGCAAACCTGT-
389 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
**
18080149 -AATCTCAAATGCTCTTTAAGGGGGTGTGAGGTT-TTGAGGTTTGATGAGGGATA-GGGG-CAAT
454 AAATCTCAAATGCTCTTTAAGGGGGTGTGA-GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
*
18080210 ATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG
518 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCG
* * * * *
18080275 TCGGAACCCTAATGCTGCCGGTCAGGTTCTCCGGCGATGCTTCGGCGATAGTGCCCCGAGGAAGA
582 TCGGAACCCCAATGCTGCCGGTCAGGATCTCCGGCGATGCTCCGGCGATGGTGCCCCG-CGAAGA
* * * * *
18080340 AAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTTGGTCCGATCCGAT
646 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT
*
18080405 CTTAGACTGGGAATGAACTCCGTATGC-----CT---AA-G---T-C--AT--CT-CG-CGAA--
711 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC-AACC
** * * * *
18080449 -ACG-AGTGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGATCGGGT
775 CACGAAACGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT
* * * * * **
18080512 CCCCCTCTGCGTGCTGTCGATCTTGCTGCCACAACCCTCAGTCTGGCCCAATCT
840 CCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCT
* * * * * *
18080566 TAGACTAGTAATGAACTCCGTATACCTAAGCCAACCGATGAAATGAGCGGGCGGGCGGGCGGGCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCA
* * * * *
18080631 CTACGTCGACAAGAGAGATGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * * *
18080696 ACACCTTCATATTTCTCTATGCCAATGCCATTTTTATTGCTTGTAATTTCATACAATGGTCCCTT
131 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
18080761 AAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTA
196 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT-
* * ***
18080826 TTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCAAAAAACTTGGTAGACGTG
260 TTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTG
*
18080891 ATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
325 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
18080956 GTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
390 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
18081021 AATCTCAAATGCTCTTTAAGGGGGT-TGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCGATAT
455 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
* *
18081085 AAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGTCCCCCCGATCGTC
520 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTC
* * * * *
18081150 GGAACCCCAATGCCGTCGGTCA-GATTCTCCGGTGATGCTTCAGCGATGGTGCCCCGACGAAGAA
584 GGAACCCCAATGCTGCCGGTCAGGA-TCTCCGGCGATGCTCCGGCGATGGTGCCCCG-CGAAGAA
* * * * *
18081214 AAATGCGGCCCCAGCACATGCCCAACCCCAGCATTTGCTGTCGCAACCCTCGGTCCGGTCCGATC
647 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
18081279 TTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTAATGAACTCCGTATG--TAAG
712 TTAGACTGGGAATGAACTCCGTATGCTTAGACTA-G---G----AATGAACTCCGTATGCCTAAG
* * * * *
18081342 TCAACCCACGAAACGAGCGTATGGGCGCTCAGCAGGCCAGAGGGGCGGGATACGCAAGCTGTGGA
769 TCAACCCACGAAACGTGC----GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
*
18081407 TCGG-CTGGGT-CCCCTCTACGTTGC-GCGAAACGATCCTTGCTACCG-ATACCCTCAGTCT-GT
830 TCGGTC-GGGTCCCCCTCTGCG-TGCTGC----CGATCC-TGCTACCGCA-ACCCTCAGTCTGGT
18081467 CTGATCT
887 CTGATCT
* * *
18081474 TAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGGCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCA
* * *
18081539 CTACGTCGGCCAGAGAGACGGGATGCGCAAGGCGTGGATCGATAGGTTGGTAGGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
18081604 ACATCTTCATATTTCTGCGTTGCCAATGCCATTTTTTATGGCTTGT-AATTCAATGACAACGGTC
131 ACATCTTCATATTTCTGTG-TGCCAATGCCA-TTTTTATGGCTTGTAAATTC-AT-ACAATGGTC
* *
18081668 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGACG-CTCATTTTTTATTTTTCACT-ATTTTTG
192 CCTTAAGCCTTCACGTGAAGTTTCATGGCAA-GACGACTCGTTTTCTATTTTTCA-TGATTTTTG
*
18081731 AAACTTTTGCGGTTCGGTATTTTTTCAAAA-TTTTTCGGAAGGAGTTTTTGGCCCCAAACTTGGT
255 AAACTTTTGCGGTTCGGGATTTTTT-AAAATTTTTTCGGAAGGA-TTTTTGGCCCCAAACTTGGT
* * *
18081795 AGACGTGAT-CTTGTA-TTTT-TTGGCATGCAC-AAAAAATTTAGCTAAAAACTTGAATTGTACA
318 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * *
18081856 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACATTAAAGGCTCCGGGCAGCAAA
383 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
**
18081921 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
448 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
*
18081986 CCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGT--GCACA-CCCCCGGCCCCCCC-
513 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * * * ** *
18082047 --CGATCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGCTTCGGCGATAGTGCTCGGGT
578 ATCG-TCGGAACCCCAATGCTGCCGGTCAGGATCTCCGGCGATGCTCCGGCGATGGTGC-CCCGC
* * * * *
18082110 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTTGTTCTGAT
641 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* * * * *
18082175 CCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGGCTGGGAATGAACTCTGTATACCTAAGTC
706 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
* * * * * * * *
18082240 AACCCACGAAACGAACGTACAGGCGTTCAACCGGCCAGAGGAGTGGGATGCGCCAGTCGGGGATC
771 AACCCACG--A--AACGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * ** * * *
18082305 GGTCGGGTCACCCTTTGCGTGCTGTCGATCCTGCTATCGTAACCCTTTGTCCGATCTGATGT
832 GGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCT
* * *
18082367 TAGATTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAATGAGCGAGCGGGCGGGCGGGCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGC-
** * *
18082432 GACGGGCGGGCGGGCACTACGTTAGCCAGAGAGACGGGATGCGCAAGTCATGGATCGATAGGGTG
65 -A----C-TAC--G--C--CG---GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * *
18082497 GTAGGTGGGTTTAGGCACATCTTTATATTTTTGTGTGCGAATGCCATTTTTATGGCTTGTAAATT
115 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATT
* * * * *
18082562 AATACAATGGTCTCTTAAGCCTTCACGTGTAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTA
180 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * *
18082627 ATGATTTTTGAAACTTGTTGCGATTCGAGA-TTTTT-AAATTTTTTCGGAAGG-TGTTTT-TCCC
245 ATGATTTTTGAAACTT-TTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAT-TTTTGGCCC
* *
18082688 CAAACTT-GTAGACATGAT-CTTGAATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
308 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
18082751 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
373 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * *
18082816 TGGCAGCAAACCCGTAAAATCTCAAATGTTTTTTAA--GGGTGTGAGTTCTCAA-GTTTGATTA-
438 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
* *
18082877 GGATA-CGGGCCAATATAA-GGCCAAGTA-CAGCATCCATCGCA-ATCATGTGCGCACACCCCCT
503 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-
* * * * *
18082938 CGGCCCCCCCGATCGCCGGAACCCCAATGCAGTCGGTCAGGTTCTCCGACGATGCT-C--C----
567 CGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGATCTCCGGCGATGCTCCGGCGATG
** * * *
18082996 --G----GCGAAGAAAAATATGGCACCAGCACATGCCCGAGCCTAGCATGTGCTACCGTAACCCT
632 GTGCCCCGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * *
18083055 CGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTAT
697 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTAT
* * * * * * * * *
18083120 CCCTAAGTTAACCCATGAAACGAGCGTACAGGTGCTTAGCCGGCCAGAGGGGTGAGACGCGCAAG
762 GCCTAAGTCAACCCACGAAACGTGCG----GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * ** * ** * * * *
18083185 CTGGGGATCGGTCGAGTCCCCCTCTATGTGCTGCCGATCCTACTGTCGTAACCCTTAATCTAGTC
823 CCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTC
*
18083250 TTATCT
888 TGATCT
* * * * * *
18083256 CAGACTGGGAATGAACTCTGTATGCCTAAGGCAACTGAAGAAAC-A---AGCCGGCGGGCGGGCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCA
* * * *
18083317 TTACGCCGACCAGAGAGACTGGATGCGCAAGCCGTGGATCGATAGGGTGGTACGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
** * *
18083382 ACATCTTCATATTTCTGTGTGCCAAAACCATTTTTATGACTTGTAAATTCATACAATGGTCCTTT
131 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
18083447 AAGCCTTCACATGAAGTTTCATGGCAAGATGACTAGTTTTCTATTTTTCATGATTTTTGAAAAC-
196 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG-AAACT
*
18083511 TTT-CGGTT---GATTTTTTAAAA-TTTTTCGGATCGG---TTTGGCCCCAAACTTGGTAGACGT
260 TTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA-AGGATTTTTGGCCCCAAACTTGGTAGACGT
*
18083568 GATCCTTTGTATTTTT-TTGGCATGCA-AAAAAAATTCAGCTAAAAAACTCGAAG-CTACAAGAT
324 GATCC-TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAAGAT
*
18083630 TTT-TGACCATTTG-AAAAAGT-TCCCTA-TTCTAGACACTTTAATGGCTACTGGCAGCAAACCT
387 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
18083691 GTAAAATCTCAAATGCCTCTTT-AGGGGGTGTGAGTTCTCGA-TTTTGATGA-GGATAAGGGGCC
451 GTAAAATCTCAAATG-CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
* *
18083753 AATATAAGGGCCAAGTA-CAGCACCCATCGCACATCATGTGTGCACACCCCCCGCGGTCCCCCCG
515 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCCG
* * ** *
18083817 ATCGTCGTAA-CCCAA---TGCCGGTC---A--T----CGA-GTTCCGGTAAT--TGCCCCAACG
578 ATCGTCGGAACCCCAATGCTGCCGGTCAGGATCTCCGGCGATGCTCCGGCGATGGTGCCCC-GCG
* * * * * * *
18083866 AAGAAAAAATGCGGCACCAGCCACATGCCCAACCCCAGCATATGCTACAGCAACCCTCAGTCCGA
642 AAG-AAAAATGCGGCACCAG-CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* *
18083931 TCTGATCTTAGACTGGGAATGAACT-CGTATGCTTAGACTGGGAATGAAACTCCGTATGCCCTAA
705 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATG-AACTCCGTATG-CCTAA
* * *
18083995 G-CAAAACCCATGAAACGAGCGTCAGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
768 GTC--AACCCACGAAACGTGCG---GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * *
18084059 GATCGGTCGGGTCCCCCTCTCCGTGCTACCGATCCTGCTGCCACAACCCTC-GATCTGATCTGAT
828 GATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAG-TCTGGTCTGAT
18084123 CT
892 CT
*
18084125 TAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCGACG-AA--A-CGAGCGGGCGGGCGGGCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCA
* * * *
18084186 CTACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGG
66 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * *
18084251 ACATCTTCATATTTTTGTATGCCAATGCCATTTTTATGACTTCTAAATTCATACAATGGTCCCTT
131 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
18084316 AAGCCTTCACGTGAAGTTTCATGGGAAGACAACTCGTTTTCTATTTTCCACGATTTTTGAAACCT
196 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA-CT
* * * * *
18084381 TTTGGGGTTCGGGATTTTTTAACAA-TTATTCGGAAGTAGTTTTGGCCCCAAATTTGGTAGACGT
260 TTTGCGGTTCGGGATTTTTTAA-AATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGT
* * *
18084445 GATACTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGATTT
324 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
18084510 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
389 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
18084575 AAATCTCAAATGCTCTTTAAGGGGGTGTGCGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATA
454 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
* * * *
18084640 TAAGGGCCAAGTATCAGCACCCATCACACATCATGTTCGCACACCCCCCAGCCCCCCCGATCGTC
519 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC
* * *
18084705 GTAACCCCAA---TACC-GTC-GG-TCT---G-G-TTCTCCGGCGATGGTGCCCCGACGAAGAAA
584 GGAACCCCAATGCTGCCGGTCAGGATCTCCGGCGATGCTCCGGCGATGGTGCCCCG-CGAAGAAA
* * * * * *
18084759 AATACGGCACCAACACATGCCCGAGCCCAGTATGTGCTGCCACAACCCTCGGTCGGGTTCGATCT
648 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCT
* * *
18084824 TAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTAAGCCTAAGTCAACTCAC
713 TAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * *
18084889 GAAACGAGCGTGCGGGCGCTTAGCCAGCCAGAGGGGC-TGATGCGCAAGCAGGGAAT-GGGCTGG
778 G-AA--A-CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GG
* ** **
18084952 GTCCCCCTCTGTGTGCTGCCGATCCTATTACCGCAACCCTTGGTCTGGT-TCGATCT
838 GTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCT-GATCT
* * * * *
18085008 TAGACAGGGAACGAACTTCGTATGCCTAAGCCAACCGACGAAACAAGCTAGCGGGCGGGCGGGCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCA
* * *
18085073 CTACGCCGGCTAGAGAGACGGGATCCGCAAGCCGTGGACCGATAGGGTGGTAGGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
18085138 ACATCTTTATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
131 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
18085203 AAACCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAAATT
196 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* * * *
18085268 GTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTC
261 -TTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTG
* * * * *
18085333 ATCCTTGTACTTTTGTTGGCATGCACACAGAAATTCAGCTAAAAACTCAAAGTGCACAAGATTTT
325 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
18085398 GTGACCATTTGAAAAAACTGTCACCACTTT-ATACACTTTAATGGCTACTGGCAGCAAACCTGTA
390 GTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
** *
18085462 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGTTTAGGGGGCTAATA
454 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
* * * *
18085527 TAAGGGCCAAGTAGCAGCACCCATCTCACATCATGTGTGCACACCCCCCGACCCCCCCGATCG-C
519 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC
* ** * *
18085591 TGGAACCCCAATGCTGCCGGTCAGGATCTCCGACGATGCTCTAGTGATGGTGCCCCAGTGAAGAA
584 -GGAACCCCAATGCTGCCGGTCAGGATCTCCGGCGATGCTCCGGCGATGGTGCCCC-GCGAAGAA
* * *
18085656 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCTGTCTGGTCCGATC
647 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
* *
18085721 TTAGACTGGGAATGAAATCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCA
712 TTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * *
18085786 TGAAACGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGAATCGATCGGGTCT
777 CGAAACGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCC
* * * *
18085851 CCCTCTGTGTGCTGCCGATCCTGCTACCGTAACCCTCGGTCTGGTTTGATCT
842 CCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCT
* * * * *
18085903 TAGACAGGGAATAAACTCCGTATGCCTCAGCCAACTGACAAAACGAGCGAGCGGGCGGGCGGGCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCA
* * * *
18085968 CTACCCCGGCTAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGG
66 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
18086033 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
131 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * **
18086098 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTGTATTTTTCACGATTTTCAAAACTT
196 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC-T
** * *
18086163 TTTGCGGTTTAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAAATTTGTAGACGTG
260 TTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTG
* * * *
18086228 ATCCTTGAATATTTGTTGGCATGCA-AAAAACAATTCAGTTAAAAACTCGAAGTGTACTAGATTT
325 ATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * * * * *
18086292 TGTGACCATTTGAAAAAAGTGTCTCCATTTTAAACACTTTAATGGTTATTGGCAGTAAACCTGTA
389 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
18086357 AAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATA
454 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
18086422 TAAGGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCGATCGTC
519 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC
* * * *
18086487 GGAACCCGAATG-T-CATCGGTCAGGTTCTCCGGCAATGCTCCGGTGATGGTGCCCCGACGAAGA
584 GGAACCCCAATGCTGC--CGGTCAGGATCTCCGGCGATGCTCCGGCGATGGTGCCCCG-CGAAGA
** * * * *
18086550 AAAATATGGCACCAGCATATGCCCGAGCCCAGCATGTGCTGTCGCAAACCTCGGTCCGGTCTGAT
646 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* * *
18086615 CTTTGACTGGGAATGAACTCCGTATGC-----CTA--AGTCAAC-CC--A----TAA---AA-CC
711 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * ** *
18086662 A-G---CGTGCGGCCGCTCAACCGGCCAGAGGGGCGAGATGCGCATGCCGGGGATCGACCGGGTA
776 ACGAAACGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * * * * *
18086723 CCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCGTCGGTCCGATCTGATCT
841 CCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCT
* * * * * **
18086776 TAGACTAGGAATGAACTCCGTATGCCTAAACCAACTGACGAAACGAGCGGGTGGGCGGGCGATCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCA
* *
18086841 CTACGCCGGCCAGAGATACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGTC
66 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
18086906 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAA
131 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAA
18086953 ATCGCACATC
Statistics
Matches: 6312, Mismatches: 713, Indels: 493
0.84 0.09 0.07
Matches are distributed among these distances:
854 2 0.00
855 4 0.00
859 1 0.00
861 4 0.00
862 51 0.01
863 14 0.00
864 55 0.01
865 61 0.01
866 55 0.01
867 199 0.03
868 362 0.06
869 565 0.09
870 41 0.01
871 30 0.00
872 35 0.01
873 457 0.07
874 13 0.00
875 13 0.00
876 15 0.00
877 50 0.01
878 31 0.00
879 10 0.00
880 13 0.00
881 72 0.01
882 37 0.01
883 147 0.02
884 57 0.01
885 97 0.02
886 40 0.01
887 505 0.08
888 9 0.00
889 247 0.04
890 7 0.00
891 5 0.00
892 17 0.00
893 77 0.01
894 51 0.01
895 718 0.11
896 66 0.01
897 22 0.00
898 202 0.03
899 175 0.03
900 72 0.01
901 25 0.00
902 177 0.03
903 162 0.03
904 301 0.05
905 175 0.03
906 76 0.01
907 146 0.02
908 256 0.04
909 138 0.02
910 52 0.01
911 95 0.02
912 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCA
CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
TTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGG
AACCCCAATGCTGCCGGTCAGGATCTCCGGCGATGCTCCGGCGATGGTGCCCCGCGAAGAAAAAT
GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCT
CTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCT
Found at i:18087154 original size:26 final size:26
Alignment explanation
Indices: 18087125--18087177 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18087115 CCGGTCCGAT
18087125 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18087151 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18087177 C
1 C
18087178 CTAAGTCACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18090080 original size:708 final size:708
Alignment explanation
Indices: 18088175--18092456 Score: 5846
Period size: 711 Copynumber: 6.1 Consensus size: 708
18088165 CCTGCTGTCA
* * * *
18088175 CAACCCTTGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCCGGTCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
18088240 ACGAGCAGGCGGGCGGGCAGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
66 AC-A--A-GCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGA
* * * *
18088305 TAGGGTGGTAGGCGGGTTTAGGTACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
127 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTT
* * * *
18088370 GTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGG-CGACTCATTTTT
192 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGC-AGGACGACTCCTTTTC
* * * * * * ** * *
18088434 TATTTTTCACGATTTTTGAAACTTTTTGCTGTTCGAGCTTTTTGAAAAAATTTTCGGAAGGAGTT
256 TATTTTTAATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTT
**
18088499 TTGGCCCGAAAC-TCGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCGTAAAAAAATTCAGCT
321 TTGGCCC-AAACTTC-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* *
18088563 AAAAACTCGAAGTGTGCAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
384 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * **
18088628 ATGGCTACTAGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGCATGAGTTCTCGAGGT
449 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * * * ** *
18088693 TTGATGAGGGATAGGGGGACAATATAAAGGCCAAGTACCAGCATCCATCATACATGATGTGCGCA
514 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCA
* ** * ** * * *
18088758 CACCCCC-AGCGCCCCCGATCGTCAAAATCTAAATGCCGTCGGTCAGGTTCTCCAGCGATGATCC
579 CACCCCCTGGC-CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCC
* * *
18088822 GACGATGGTGCCCCGACGAAGAAAATTATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
643 GACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCC
18088887 G
708 G
* * * * *
18088888 CAACCCTCAGTCCAGTCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCCGGTCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--
* * * *
18088953 ACGAACGAGAGGGCGGGCGGGCAGGCACTACGTCGACCAGAGAGATGGGATGCGCAAGACGTGGA
64 A--AAC-A-A--GCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGA
* * *
18089018 TCGATAGGGTGGTAGGTGGGTTTAGGCACTTCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
123 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATG
* * * *
18089083 GCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTCATGGTAAGACGACTCGTT
188 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAGGACGACTCCTT
* * *
18089147 TTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGA
253 TTCTATTTTTAATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGA
* * * *
18089212 GTTTTGGCCGCAAACTTGGTAGACGTGATCCTTGTATTTTCGTTGGCATGCACAAAAAAATTGAG
318 TTTTTGGCC-CAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * **
18089277 ATAAAAACTCGAAGTGTACAAGATTTTTTGATTATTTGAAAAAAGTGTCCCCATTTCAGACACTT
382 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
18089342 TAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCAAG
447 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
18089407 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCG
512 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCG
* *
18089472 CACACCCCCTGGCCCCCCGATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGTGATGCTC
577 CACACCCCCTGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTC
* **
18089537 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT-CATAAGCCCAGCATGTGCTGC
642 CGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGC
18089601 CG
707 CG
* * * * **
18089603 CAACCCTCAGTCTGGTCGGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACTGATTAA
1 CAACCCTCGGTCCGGTCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
18089668 ACAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGTGATGCACAAGCCGTGGATTGATAGG
66 ACAAGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGG
* *
18089733 GTGGTAGGTGGGTTTGGGTACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAA
131 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAA
* * *
18089798 ATTTATACAATGGTACCTTACGCCTTCACGTGAAGCTTCATGGCAGGACGACTCCTTTTCTATTT
196 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAGGACGACTCCTTTTCTATTT
* * * * *
18089863 TTAATGATTTTCGTAACTTTTTGTGGTTCGGGATTTGTTAAAAATTTTTTGGAAGGATTTTTGGT
261 TTAATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGG-
* * *
18089928 CCCAAACTTCGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAGAATTCAGGTAAAAAC
325 CCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
18089993 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCT
390 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
18090058 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATG
455 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
*
18090123 AGGGATAGGGGGCCAATATAAGGGCCAAATACCAACACCCATCGCACATCATGTGCGCACACCCC
520 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACA-CCC
* * ** *
18090188 CCCGGCCCCCCGATCGCCAAAACCCCAATGCCGTCGGTCAAGTTCTCC---GA-----C-A--A-
584 CCTGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGAT
* * * * * *
18090241 --TGCTCCGACGATGAAAAATGCGGCACCAGCAAATGCCCGAGCCCAGTATGTGCTGCCG
649 GGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCG
* * * *
18090299 CAACCCTCGGTCTGGTCGGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAA
1 CAACCCTCGGTCCGGTCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
18090364 ACAAGCGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCATGGATCGATAGG
66 ACAAGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGG
* * *
18090429 GTGGTAGGTGGGTTTAGGCACATCGTCATATTTTTGCAGGCCAATGCAATTTTTATGGCTTGTAA
131 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAA
* *
18090494 ATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGCTTCATGGCAGCACGACTCCTTTTCTATTT
196 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAGGACGACTCCTTTTCTATTT
*
18090559 TTAATGATTTTCGTAACTTTTTGCGGTTCG-GATTTTTTAAAATTTTTTTGGAAGGATTTTTTGG
261 TTAATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGA-TTTTTGG
* * * *
18090623 CCCAAACATCGTAGTCGTGATCCTTGTATTTTTGCTGGCATGCACAAAAAATTTCAGCTAAAAAC
325 CCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
18090688 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCT
390 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
18090753 ACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGATTGATG
455 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
18090818 AGGGATATGGGGCCAATATAAGGGCCAAGTACCAACACCCATTGCACATCATGTGCGCACACCCC
520 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCC
* * **
18090883 CTAGGTCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGTGA
585 CT-GG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGA
* *
18090948 TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACAT-CACAGGCCCAGCATGTGCTGCCG
648 TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCG
* * * * *
18091008 CAACCCTTGGTCTGGTCGAATCTTAGACTGGGGAATGAACTTCGTATGCCTATGCCAACCGACGA
1 CAACCCTCGGTCCGGTCGGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * *
18091073 AACGAGTGGGCAGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCAATAG
65 AACAAGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAG
18091138 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTA
130 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTA
18091203 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAGGACGACTCCTTTTCTATT
195 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAGGACGACTCCTTTTCTATT
* *
18091268 TTTAATGATTTTCGTAACCTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGG
260 TTTAATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGG
* * *
18091333 TCCCAACCTTCGTAGACGTGATGCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
325 -CCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * *
18091398 CTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGATACTTTAATGGC
389 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * * * *
18091463 TATTCGTAGCAAACCTGTAAAATCTGAAATGCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGAT
454 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * *
18091527 GAGAGATGGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGTGCAC-
519 GAGGGAT-AGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGC--GCACA
* * * ** * * *
18091591 CCCCCCGGCCCCCCCGATCATCGGAACCTCAATGCTATCGGTCAGGTTCTCCAGTGATGCTTCGG
581 CCCCCTGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGA
** * * * * * *
18091656 TAATGGTGCCTCGATGAAGAAAATTATGACACCAGCACATGCCCAAGCCCAGCATGTGCTGCTG
645 CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCG
*
18091720 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCCGGTCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
** ** * *
18091785 AGGAGCGGGCGGGGGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
66 ACAAGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGG
*
18091850 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
131 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAA
* * * *
18091915 ATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
196 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAGGACGACTCCTTTTCTATTT
* * * * * * * **
18091980 TTCACGATTTTTGAAACTTTTTGAGGTTTGGGATTTTTTAAAATTTTTTTGAAAGGCATTTTTAC
261 TTAATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGG-ATTTTTGG
* * * ** * *
18092045 CCCAAACCTGGTAGACTTGATCCTCATAGTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAAC
325 CCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
18092110 TCAAAGTGTACAAGATTTTGTGACGATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
390 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
18092175 ACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG-G-GAGTTCTTGAGGTTTGATG
455 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
18092238 AGGGATAAGGGGCCAATATAAGGGCCAAGGACCAGCACCCATCGCACATCATGTGCGCACACCCC
520 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCC
* * *
18092303 CTGGCACCCCCGATCGTCGGAACCCCAATGTCGTCGGTCATGTTCTTCGGTGA---T--G-C--T
585 CTGGC-CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGAT
* * ** ** *
18092360 -GT--CCCGATGAAGAAAAATGCTACACCAGCACATGCCTGAGCCCAGCATGTGCTGCTG
649 GGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCG
* * * *
18092417 TAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACT
1 CAACCCTCGGTCCGGTCGGATCTTAGACTGGGAATGAACT
18092457 TTGTATGCTT
Statistics
Matches: 3203, Mismatches: 325, Indels: 98
0.88 0.09 0.03
Matches are distributed among these distances:
694 5 0.00
695 297 0.09
696 331 0.10
697 84 0.03
698 1 0.00
699 4 0.00
700 2 0.00
701 1 0.00
703 1 0.00
704 1 0.00
705 1 0.00
706 2 0.00
707 150 0.05
708 367 0.11
709 140 0.04
710 334 0.10
711 723 0.23
712 60 0.02
713 63 0.02
715 77 0.02
716 397 0.12
717 162 0.05
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (708 bp):
CAACCCTCGGTCCGGTCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACAAGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAGGACGACTCCTTTTCTATTT
TTAATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGC
CCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
GGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCC
TGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGG
TGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCG
Found at i:18092758 original size:159 final size:159
Alignment explanation
Indices: 18092464--18092840 Score: 445
Period size: 159 Copynumber: 2.4 Consensus size: 159
18092454 ACTTTGTATG
* * * * * *
18092464 CTTAGATTGGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTCAAC
*** * * * *
18092529 CGGCCAAAGGGGCGGGATTCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTACGTGCTGTCGATCC
66 CGGCCAAAGAAACGGGATGCGCAAGCCGGGGATCAGCCTGGTCCCCCTCTACGTGCTCTCGAACC
* **
18092594 AGCTACCATAACCCTCAGTCCAGTCTGAT
131 AGCTACCACAACCCTCAGTCCAGTCCAAT
* * *
18092623 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGTGGGCGGGCACT-ATC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTCA-A
* *
18092687 CCGGCCAAAGAAACGGGATGCGCAAGCCGGGGATCAG-TTGGGTCTCCCTCTACGTGCTCTC-AA
65 CCGGCCAAAGAAACGGGATGCGCAAGCCGGGGATCAGCCT-GGTCCCCCTCTACGTGCTCTCGAA
* * * **
18092750 CCTTGCTACCGCAACCCTCGGTCTGGTCCAAT
129 CC-AGCTACCACAACCCTCAGTCCAGTCCAAT
* * *
18092782 CTTAGACTGGGAATGAACTCCCTATGCTTAAGCCAACCGATGAAACGAGCGGGCGGGCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCA
18092841 GGCGGACGGG
Statistics
Matches: 184, Mismatches: 31, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
158 5 0.03
159 179 0.97
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTCAAC
CGGCCAAAGAAACGGGATGCGCAAGCCGGGGATCAGCCTGGTCCCCCTCTACGTGCTCTCGAACC
AGCTACCACAACCCTCAGTCCAGTCCAAT
Found at i:18093519 original size:26 final size:26
Alignment explanation
Indices: 18093490--18093540 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18093480 CTGGTCCGAT
* *
18093490 CTTAGATTGGGAATGAACTCCGTATC
1 CTTAGACTAGGAATGAACTCCGTATC
18093516 CTTAGACTAGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
18093541 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATC
Found at i:18094403 original size:26 final size:26
Alignment explanation
Indices: 18094374--18094426 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18094364 CCAGTCCGAT
*
18094374 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18094400 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18094426 C
1 C
18094427 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18095315 original size:26 final size:26
Alignment explanation
Indices: 18095275--18095327 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18095265 CTAGTCCGAT
18095275 CTTAGACTGGAAATGAACT-TCGTATG
1 CTTAGACTGGAAATGAACTCT-GTATG
*
18095301 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
18095327 C
1 C
18095328 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCTGTATG
Found at i:18096028 original size:897 final size:896
Alignment explanation
Indices: 18092623--18097663 Score: 6573
Period size: 884 Copynumber: 5.7 Consensus size: 896
18092613 CCAGTCTGAT
* * * * * * * *
18092623 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGTGGGCGGGCACT-ATC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA-G
* *** * * * * * * *
18092687 CCGGCCAAAGAAACGGGATGCGCAAGCCGGGGATCAGTTGGGTCTCCCTCTACGTGCTCTC-AAC
65 CCGGCCAGAGGGGCGAGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATC
* * * * *
18092751 CTTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCCTATGCTTAAGCC
130 C-TGCTGCTGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
18092816 AACCGATGAAACGAGCGGGCGGGCAGGCGGACGGGCACTAAGCCGGCCAGAGAGACGGGATGCGC
194 AACCGACGAAACGAGCGGGCGGGC--G-GG-CGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
*
18092881 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGGCAATGC
255 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*** *
18092946 CATTTTTACAACTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
320 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
18093011 ACGACTCGTTTTCTAATTTTCACGATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAAATTT
385 ACGACTCGTTTTCTAATTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * * *
18093076 TTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATACACAA
450 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
18093141 AAAAAGTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
515 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18093206 TCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
580 TCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
18093271 ATTTCTTGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCTAGTACCAGCACCCATCGCAC
645 AGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * *
18093336 ATCATGTGCACACACCCCCTCGGCCCCCCCGATCACCGGAAACCCAATGTCGCCGGTCAGGTTCT
710 ATCATGTGCGCACACCCCC-CGG-CCCCCCGATCGTCGGAAACCCAATGCCGTCGGTCAGGTTCT
* **
18093401 CC---GA----C---GATGGTGCTCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCA
773 CCGGTGATGCTCGATGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAG-CCA
* * * * *
18093456 GCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATC
837 GCATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGAAATGAACTCCGTATG
* * * **
18093516 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAACGAGCGTGCAGGCGCTCAAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * **
18093581 CGGCCAAAGGAGCGAGATGCGTAAGCTGGGGATCGACCGGGTCCCCCTCTGCATGCTACCGATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
* * * * *
18093646 TGCTG-TAGTAACCCTCAGTCTGATCCAATCTTCGACTAGGAATGAACTCCGTATGCCTAAGACA
131 TGCTGCT-GCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
18093710 ACCGACGAAACGA----GCGGGCGGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCC
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
18093771 GTGGATCGATAGGGTGGTAGGTGGATTTAGGCAGATCTTCATGTTTCTGCATGCCAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
18093836 TT-TGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** * *
18093900 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTTTTCGA
390 TCGTTTTCTAATTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGA
* * *
18093965 AAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCTTTGTATTTTTGTTGGCATACACAAAAAAA
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
18094030 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCAATTCAGA
520 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
18094095 CATTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTC
585 CACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
18094160 TCAAGGCTTT-ATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
650 TCGAGG-TTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
18094224 TGTCCGCACACCCCCCCGGGCCCCCCGATCGCCGGAACCCCAATGCCATCAGTCAGG---T----
714 TGTGCGCACA-CCCCCC-GGCCCCCCGATCGTCGGAAACCCAATGCCGTCGGTCAGGTTCTCCGG
* * * *
18094282 T-AT--TCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCCCCAGCACATGCTCGAGGCCAGCAT
777 TGATGCTCGATGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGA-GCCAGCAT
* * * * *
18094344 GTGTTGCCGTAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
841 GTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGAAATGAACTCCGTATG
* *
18094400 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
*
18094465 CGGCCAGAGGGGCGAGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTACGTGCTG-CTGATC
66 CGGCCAGAGGGGCGAGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTC-GATC
* * *
18094529 CTGCTGCTGCAACCC-CTAGCCCGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCC
130 CTGCTGCTGCAACCCTC-AGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
18094593 AATCGACGAAACGAGCGGGTGGGCTGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
194 AACCGACGAAACGAGCGGGCGGGC--G--GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * **
18094658 AAGCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGGACATCTTCATATTTCTGTGTGCCAATGC
255 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
** * * *
18094723 CATTTTTATCTCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCGTGGCAAG
320 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
18094788 ATGAATCGTTTTCTAATTTTCACGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTT
385 ACGACTCGTTTTCTAATTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* *
18094853 TTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCATAA
450 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
18094917 AAAAATTCAGCTACAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
515 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
18094982 TCAGACACTTTAATGGCTACTGGCAGCAAACTTGGAAAATCTCAAATGCTCTTTAAGGGGGTGTG
580 TCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18095047 AGTTCTAGAGGTTTTATGAG-GCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
645 AGTTCTCGAGGTTTGATGAGAG-ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
18095111 CATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAAACCCAATGCCGTCGGTCAGGTTCTC
709 CATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAAACCCAATGCCGTCGGTCAGGTTCTC
** *
18095176 CGGTGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATGTGGCTCCAGCACATGCCCGAGCCTA
774 CGGTGATGCT-CGATGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC-A
* * * *
18095241 GCATTTGCTGTCGCAACACTCGGTCTAGTCCGATCTTAGACTGGAAATGAACTTCGTATG
837 GCATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGAAATGAACTCCGTATG
* * * *
18095301 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGAGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
18095366 CGGCCAGAGGGGCGAGATGTGCAAGTTGGGGATTGGTCGGGTCCCCCTTTACGTCCTGTCGATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
* * ** *
18095431 TGGTGCTGCAACCCTCGGT-TCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCTGCAACCCTCAGTCT-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
18095495 ACCGAAGAAACGAGCAGGTGGGCGGGCGGGCACTACGTCGGCCAGAAAGATGGGATGCGCAAGCC
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
18095560 GTGGCTCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAATT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
18095625 TTATGGCTTTTAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** * * *
18095690 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTGCGGGATTTTTCAAAATATTTTCGA
390 TCGTTTTCTAATTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGA
* * * * ***
18095755 AAGGAGTTTTGGGCCCAAACTTGGTAGACATGATCCCTATATTTTTGTTGGCATGCACAAAACGC
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
18095820 TTCAG-TCAAAAACTCGAAGTGTACAAGATTTTGTGACCACTTGAGAAAAGTGTCCCCATTTCAG
520 TTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
18095884 ACACTTTAATGGCTACTGGGAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
18095949 CTCGAGGTTTGATGAGAGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCA
649 CTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
18096013 TGTACGCACACCCCCCGGCCCCCCGATCGTC-GAAACCTCAATGCCGTCGGTCAGGTTCTCTGGC
714 TGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAAACC-CAATGCCGTCGGTCAGGTTCTCCGG-
* * *
18096077 T-ATGCTCCGATGATGGTACCCCGACAAAGAAAAATGTGGCACCAGCACATGCCTGAGCCTAGCA
777 TGATGCT-CGATGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC-AGCA
* * * * * *
18096141 TGTGCTGCCGCAACCCTCGGTC-CGACCCGATCTTAGA-TTGAGAATGAATTTCGTCTG
840 TGTGCTGCCGCAACCCTCGGTCTAG-TCCGATCTTAGACTGGA-AATGAACTCCGTATG
* * *
18096198 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
18096263 CGGCCAGAGGGACGGGATGCGCAA-CCGGGGATCGGTCGGGTCCCCCGCTATGTGCTATCGATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
* * ** *
18096327 TGCTACTGCAACCCTCAGT-TCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
131 TGCTGCTGCAACCCTCAGTCT-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
18096391 ATCGACGAAACGAACGGGCATGCGGGTGGGCGGGCATTACGTCGGCCAGAGAGATGGGATGCGCA
195 ACCGACGAAACGAGC-GG---GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
*
18096456 AGCCG-GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGGCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
18096520 ATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
18096585 CGACTCATTTTCTAATTTTCACGATTTTTGAAACATTTTGCGGTTCGAGATTTTTTAAAATTTTT
386 CGACTCGTTTTCTAATTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * * *
18096650 TCGGAAGGATTTTTGGCCCCAAACTCGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAA
451 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18096715 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* ** *
18096780 CAAACACTTTAATACCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
18096845 GTTCTCGAGGTTTGATGAGGGACAGGGGGCCAATATTAGGGCCAAGTACCAGCACCCATCGCACA
646 GTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * **
18096910 TCATGTGCGCACACCCCCCAGCCCCCTCGATCGTCGGAACCCCAATGTCGTCTATCAGGTTCTCC
711 TCATGTGCGCACACCCCCCGGCCCCC-CGATCGTCGGAAACCCAATGCCGTCGGTCAGGTTCTCC
** *
18096975 GGTGATGCTTCGGCGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGGCCAG
775 GGTGATGC-TCGATGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGA-GCCAG
*
18097040 CATGTGCTGCCACAA----C---CT--T-CGATC-----C--G----G---TCCG-AT-
838 CATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGAAATGAACTCCGTATG
* *
18097073 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
** * * * ** * *
18097138 CAACTAGAGAGGCGGGATGCGCAAG-TCAAGGATCGGTTGGGT-CCCCTCTACGTGCTGTCAATC
66 CGGCCAGAGGGGCGAGATGCGCAAGCT-GGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATC
* ** * *
18097201 TTGCTGCCACAACCCTCCA-TCTGGTCCAATCTTAAACTGGGAATGAACTCCGTATGCATAAGCC
130 CTGCTGCTGCAACCCT-CAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
18097265 AACCGA--AAGCGGGCGGGCGGGTGGGTGGGCACTACGACGGCCAAAGAGAC-GGATGCGCAAGC
194 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * * * * *
18097327 CGTAGATCTATAGGGTGGTAGGT-GGTTTTGGCACATCTCCATATTTCTACATGCCATTGCCATT
259 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
18097391 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACAA
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * ** *
18097456 CTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCG
389 CTCGTTTTCTAATTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
*
18097521 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCTTTGTATTTTTGTTGGCATGCA-AAAAAA
454 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * * *
18097585 CATTCAACCAAAAACTTGAAGTGTACAAGATTTAGTGACCAATTGAAAAAAGTGTCCCCATTTCA
519 -ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
18097650 GACACTTTAATGGC
583 GACACTTTAATGGC
18097664 CGAAACCCCA
Statistics
Matches: 3677, Mismatches: 403, Indels: 161
0.87 0.10 0.04
Matches are distributed among these distances:
867 6 0.00
868 291 0.08
869 47 0.01
872 2 0.00
873 5 0.00
875 152 0.04
876 16 0.00
877 3 0.00
879 1 0.00
880 1 0.00
881 2 0.00
883 2 0.00
884 669 0.18
885 113 0.03
886 2 0.00
887 1 0.00
888 5 0.00
889 6 0.00
890 36 0.01
891 15 0.00
892 302 0.08
893 320 0.09
894 5 0.00
896 112 0.03
897 532 0.14
898 156 0.04
899 371 0.10
900 113 0.03
901 380 0.10
902 11 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGAGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
TGCTGCTGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTAATTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGGCCCCCCGATCGTCGGAAACCCAATGCCGTCGGTCAGGTTCTCCGGTGAT
GCTCGATGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCAGCATGTGCT
GCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGAAATGAACTCCGTATG
Found at i:18098726 original size:26 final size:26
Alignment explanation
Indices: 18098690--18098739 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18098680 CCGGTCCAAA
*
18098690 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18098716 CTTAGACTAGGAATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
18098740 CGCCTAAGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18099610 original size:26 final size:26
Alignment explanation
Indices: 18099581--18099633 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18099571 CCGGTCTGAT
18099581 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
18099607 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
18099633 C
1 C
18099634 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:18104006 original size:26 final size:26
Alignment explanation
Indices: 18103967--18104019 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18103957 CCGATCCGAT
* * *
18103967 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
18103993 CTTAGACCGAGAATGAACTCCGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
18104019 C
1 C
18104020 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACCGAGAATGAACTCCGTATG
Found at i:18104892 original size:26 final size:26
Alignment explanation
Indices: 18104856--18104908 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18104846 CTGGTCTGAT
*
18104856 CTTATACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
18104882 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18104908 C
1 C
18104909 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18105649 original size:895 final size:890
Alignment explanation
Indices: 18101369--18105993 Score: 5402
Period size: 886 Copynumber: 5.2 Consensus size: 890
18101359 GAACGTGCGG
* * * * * * * *
18101369 AAGTCAATCCATGAAATGAACGTGCGGGCGTTCAGCCGGCCAGAAGGGCGGGATGCGTAAGCCGA
1 AAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGG
* * * * * * * **
18101434 GGATCGATCGGGTCCCCCTTTGCGTGCTGCCAATCCTGCTACCGCAACCCT-TAGTCTAGTCCT-
66 GGATCGGTCAGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCT-GTCCGGT-CTA
* * * * * * * *
18101497 ATCTTAGATTGGTAATTAACTCTGTAAGCTTCAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
129 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--------GTGGGCG
* * * *
18101562 GGCGGGCACTACGCTGGCCAGAGAGACGGGGTGCGCAAGCCGTGGATCAATAGGGTGCTAGGTGG
186 GGCGGGCACTACGCAGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
18101627 GTTTAGGCACATCTTCATATTTCTATGTGCCAATCCCATTTTTATGGCTTGTAAATTCAAACAAT
251 GTTTAGGCACATCTTCATATTT-T-TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
18101692 GGTCCCTTAAGCCTTCACGTGAAGTCTCATTGCAAGATGACTCGTTTTCTATTTTTCATGATTTT
314 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCATGATTTT
** * * *
18101757 CAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGG
379 TGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTT-GAAGGAGTTTTGGCCCCAAACTTGG
* * * *
18101822 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCAAAGTGTAC
443 TAGTCGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
18101887 AAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCGGATACTTTAATGGCTAATGGCAGCAA
508 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
18101951 ACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGACGGATAGGGG
573 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
18102016 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-ACCCCCGGCCCC-C
638 GCCAATAAAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCTT
* * * * *
18102079 CGATCGTCGGAA-CCCAATACCATCGATCAGGTTCTCTGGTGATGCTCC-GACGATGGTACCCCG
703 CGATCGTCGGAACCCCAATGCCGTCG-TCAGGTTCTC-CGAGATGCTCCTG-CGATGGT-GCCCG
*
18102142 ACGAAGAAAAATGCGGCACCAGCACA-T-----GCCCA--A---------GCAACCCTC-GATTC
764 ACGAAGAAAAATGCGGCACCAGCACATTCCAGAGCCCAGCATGTGCTGCTGCAACCCTCTG-TCC
* * * * * * * *
18102189 GGTCCGATCTTTGATTGGCAATGAACTCCATATGCTTAGA-TTGGAATGAACTCCATATGCCCC
828 GGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATG-CCT
* * * * * *** * *
18102252 ACGTCAACCCACGAAACGAGCGTGTGGGCGCTTAGCCGGCCAGATGGGCAAGAGGCTCAAGCCGG
1 AAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGG
* * * * * * * *
18102317 GGATCGGTCGGGTCCCCCTCTGGGTGCTGCCGAT-ATGCTACCACAA-CCTCCAGTCCGATCTGA
66 GGATCGGTCAGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCT-CTGTCCGGTCTAA
* * *
18102380 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACAAAACGAGTGGGCGGGTGGGAGG
130 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGC----GGGCGG
* * * *
18102445 GCACTACGCCGACCAGAGAGACGGGATCCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
191 GCACTACGCAGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
18102510 GGCACATCTTCATA-TTTT-T-CCAATGCTATTTTTATGGCTTGTAAATTCTTGCAATGGTCCCT
256 GGCACATCTTCATATTTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * ** *
18102572 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACA
321 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCATGATTTTTGAAACT
* * * * * * *
18102637 TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTCGGTAGACAT
386 TTTTGCGGTTTGGGATTTTTTAAAATTTTTT-TGAAGGAGTTTTGGCCCCAAACTTGGTAGTCGT
* *
18102702 GATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTT
450 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * **
18102767 TGTCACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGTTGCAAACCTGTA
515 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
** * *
18102832 AAATCTCAAATGCTCTTTAAGCAGGTGTGAGTTCCCGAGGTTTCATGAGGGATAGGGGGCCAATA
580 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
** * *
18102897 TGAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCCGGCCCC--CAGATT
645 AAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCTTC-GATC
* * * * * * * * * * *
18102960 ATCAGAATCCCAATACCGTCGGTTAGGTTCTCCGGGGATGCTTCGGTGATGGAGCCCCGATGAAG
708 GTCGGAACCCCAATGCCGTC-GTCAGGTTCTCC-GAGATGCTCCTGCGATGGTG-CCCGACGAAG
* * * *
18103025 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-C-G---G-
770 AAAAATGCGGCACCAGCACATTCCAGAGCCCAGCATGTGCTGCTGCAACCCTCTGTCCGGTCCGA
* *
18103080 TC-----C-----A-G---TTCG-AT-CTTAGACTAGAAATGAACTCCGTATGCTT
835 TCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCT
* **
18103120 AAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCGG
1 AAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGG
* * * * * ** * *
18103185 GGATCAGTCAGGTCCCCCTCTACGTGCTGCCGATCTTGCTGCCACAA-CCTTTAGTCTAGTATGA
66 GGATCGGTCAGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCT-GTCCGGTCTAA
*
18103249 TCTTGGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCGT
130 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GTGGGC--G-G-
* *
18103314 GCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGACCGATAGGGTGGTAGGTGGG
187 GCGGGCACTACGCAGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
18103379 TTTAGGCAGATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGGTTGTAAATTCATACAATG
252 TTTAGGCACATCTTCATATTT-T-TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
18103444 GTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGCTTTT-TATTTTTCACGATTTT
315 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGATTCG-TTTTCTATTTTTCATGATTTT
* * * *
18103508 TGAAACTTTTTGCGGTTTGGGATGTTTTAAAATTTTTTTGAAAGAAGTTTTCGCCCCAAACCTGG
379 TGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTG-AAGGAGTTTTGGCCCCAAACTTGG
18103573 TAGAT-GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
443 TAG-TCGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
18103637 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTCCTGGCAGCA
507 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
18103702 AACCTGTAAAATCTCAAAGGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTCTGATGAAGGATAGGG
572 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * *
18103767 GGCCAATATAAGGGCCAAGTACCAGCA-CCATTGGACATGATGTGCGCACACCCCCCCGGCCCC-
637 GGCCAATAAAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCT
* * * *
18103830 CCGATTGTCGGAACCCCAATGTCGTCAGTCAAGTTCTCCGATGATGCTCC-GACGATGGTGCCCC
702 TCGATCGTCGGAACCCCAATGCCGTC-GTCAGGTTCTCCGA-GATGCTCCTG-CGATGGTG-CCC
* * * * * *
18103894 GACGAAGAAAAATGCGGCGCCAGCACATGCCAGAGCCCAGCATGTGTTGCCGTAACCCTCGGTCC
763 GACGAAGAAAAATGCGGCACCAGCACATTCCAGAGCCCAGCATGTGCTGCTGCAACCCTCTGTCC
* *
18103959 GATCCGATCTTAGACTGGGAATGAAC-TCTGTATGCTTAGAC-CGAGAATGAACTCCGTATGCCT
828 GGTCCGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACTAG-GAATGAACTCCGTATGCCT
* * * *
18104022 AAGTCAACCCACGAAATGAGCGTGCGGGCGC-CTAGCCGGCCAAAGGAGCGGGATGCGCAAGCTG
1 AAGTCAACCCACGAAATGAGCGTGCGGGCGCTC-AGCCGGCCAGAGGGGTGGGATGCGCAAGCCG
* * * * ** *
18104086 GGCATCGGCCAGGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCGCAACCCTCAATCCGGTCTGA
65 GGGATCGGTCAGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCTGTCCGGTCTAA
* * * *
18104151 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGA--------GCGAGCAC
130 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCAC
* * * *
18104208 TACACAGGCTAGAGAGAAGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
195 TACGCAGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
18104273 CATATTCATATTTCTGTGTGCCAATGCCATTTTTATGGCCTGTAAATTCACACAATGGTCCCTTA
260 CATCTTCATATTT-T-TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
18104338 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTT-GTTTTCTATTTTTCATGATTTTTGAAACTT
323 AGCCTTCACGTGAAGTTTCATGGCAAGACGA-TTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* * * * * *
18104402 TTTGCAGTTTGGGATTTTTTTAAATTTTTTCGGAAAGAGTTTTGGCCCCAAAGTTGGTAGACGTG
387 TTTGCGGTTTGGGATTTTTTAAAATTTTTT-TGAAGGAGTTTTGGCCCCAAACTTGGTAGTCGTG
* * * * * *
18104467 ATACTTGCATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTATAAGATTTT
451 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
18104532 GTGACCATTTGAAAAAAGTGTCCCCGTTTGAGACACTTTAATGGCTACTGGCAGCAAACCTATAA
516 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
18104597 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAC
581 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAA
* * * * *
18104662 AGGGGCCAATTACCAGAACCCATCGCACATCATGTGCACACACCACCCCGGCTCCCTT-GATCGT
646 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC-CCCTTCGATCGT
*
18104726 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCTGCGATGGTAGCCCGACGAAGAA
710 CGGAACCCCAATGCCGTC-GTCAGGTTCTCCGA-GATGCTCCTGCGATGGT-GCCCGACGAAGAA
* * * * *
18104791 AAATGCGGCACCAGCACATTCTCTGAGCCCAGCATGTGCTACTGCAACCCTCTTTCTGGTCTGAT
772 AAATGCGGCACCAGCACATTC-CAGAGCCCAGCATGTGCTGCTGCAACCCTCTGTCCGGTCCGAT
* * *
18104856 CTTATACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCT
836 CTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCT
* * *
18104911 AAGTCAACCCACGAAATGAGCGTGCGGGCACTAAGCCGGCCAGAGGGGTGTGATGCGCAAGCCGG
1 AAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGG
* ** * * * * *
18104976 GGATCGGTCAGGTCCCCCTCTGCATGCTGTCGATCCTACTACCATAACCCTTTGTCCGGTCCAAT
66 GGATCGGTCAGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCTGTCCGGTCTAAT
* *
18105041 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGTAACGAGTGGGCGGGCGGGCACT
131 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCACT
* * * *
18105106 ATGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTATGTGGGTTTAGGCAC
196 ACGCAGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
18105171 ATCTTCATATTTTTGCATGCCAATGCCATTTTAATGGCTTGCAAATTCATACAATGGTCCCTTAA
261 ATCTTCATATTTTTG--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
18105236 GCCTTCACGTGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCATGATTTTTGAAAC-TTT
324 GCCTTCACGTGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
* **
18105300 TACGGTTCAGGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGTCGTGAT
389 TGCGGTTTGGGATTTTTTAAAATTTTTTT-GAAGGAGTTTTGGCCCCAAACTTGGTAGTCGTGAT
* *
18105365 CCCTGTATTTTTTTTGGCATGTACAAAAAAATTCAGCT-AAAACTCGAAGTGTACAAGATTTTGT
453 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
18105429 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGTAGCAAACCTGTAAAA
518 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
18105494 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTCATGAGGGATAGGGGGCCAATAAAA
583 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAAAA
* * * **
18105559 GGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCCCCCGCCCCTTCGATCACCGG
648 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCTTCGATCGTCGG
* * *
18105624 AACCCCAATGCCGTCGTTCAGGTTCTCTGGAGATGCT-TTGGCGATGGTGCCCCAGCGAAGAAAA
713 AACCCCAATGCCGTCG-TCAGGTTCTC-CGAGATGCTCCT-GCGATGGTGCCCGA-CGAAGAAAA
* * *
18105688 ATGCGGCACCAGCACATTCCCGAGCCTAGCATGTGCTGCTGCAACCCT-TGGTCCGGTCCGATTT
774 ATGCGGCACCAGCACATTCCAGAGCCCAGCATGTGCTGCTGCAACCCTCT-GTCCGGTCCGATCT
18105752 TAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCT
838 TAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCT
* * * *
18105805 AAGTCAACCCACGAAACGAGCGTGCGAGTGCTCAGTCGGCCAGAGGGGTGGGATGCGCAAGCCGG
1 AAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGG
* * * * * * * * *
18105870 GGATC-GACCGAGTCCACTTCTGTGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGTTCGAA
66 GGATCGGTCAG-GTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCTGTCCGGTCTAA
* * * * * * *
18105934 TCTTAGAATGGGAATAAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
130 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCG
18105994 CTCAACCAGC
Statistics
Matches: 3219, Mismatches: 407, Indels: 221
0.84 0.11 0.06
Matches are distributed among these distances:
868 93 0.03
869 84 0.03
870 2 0.00
871 2 0.00
872 1 0.00
873 314 0.10
874 154 0.05
875 5 0.00
876 129 0.04
877 87 0.03
878 424 0.13
879 4 0.00
880 1 0.00
881 6 0.00
882 55 0.02
883 85 0.03
884 2 0.00
885 7 0.00
886 428 0.13
887 30 0.01
888 84 0.03
889 233 0.07
890 4 0.00
891 1 0.00
892 1 0.00
893 6 0.00
894 256 0.08
895 263 0.08
896 96 0.03
897 179 0.06
899 2 0.00
900 1 0.00
901 4 0.00
902 173 0.05
903 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (890 bp):
AAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGG
GGATCGGTCAGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCTGTCCGGTCTAAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCACT
ACGCAGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTG
CGGTTTGGGATTTTTTAAAATTTTTTTGAAGGAGTTTTGGCCCCAAACTTGGTAGTCGTGATCCT
TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCTTCGATCGTCGGAAC
CCCAATGCCGTCGTCAGGTTCTCCGAGATGCTCCTGCGATGGTGCCCGACGAAGAAAAATGCGGC
ACCAGCACATTCCAGAGCCCAGCATGTGCTGCTGCAACCCTCTGTCCGGTCCGATCTTAGACTGG
GAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCT
Found at i:18105788 original size:26 final size:26
Alignment explanation
Indices: 18105751--18105802 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18105741 CGGTCCGATT
* *
18105751 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
18105777 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
18105803 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:18106065 original size:159 final size:159
Alignment explanation
Indices: 18105776--18106152 Score: 461
Period size: 159 Copynumber: 2.4 Consensus size: 159
18105766 ACTTCGTATG
* * * * **
18105776 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGCTCAGT
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * * ** *
18105841 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACCGAGTCCACTTCTGTGTGCTACCGATCC
66 CAGCCAGAGGGGCGAGATGCACAAGCCGGGGATCGACCGAGTCCACCACTGTGCGCTACCGATCC
* * * *
18105906 TGCTGCCGCAACCCTCGGTCCGTTCGAAT
131 TGCTGCCACAACCCTCGATCCGATCCAAT
* *
18105935 CTTAGAATGGGAATAAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * * *
18106000 CAGCCAGAGGGGCGAGATGCACAA-CTTGGGTATCGGCCGGGTCCCCCACTGTGCGCTACCGATC
66 CAGCCAGAGGGGCGAGATGCACAAGC-CGGGGATCGACCGAGTCCACCACTGTGCGCTACCGATC
* *
18106064 CTGCTGTCACAACCCTCGATCTGATCCAAT
130 CTGCTGCCACAACCCTCGATCCGATCCAAT
** *
18106094 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACTGACGAAACAAGCG-GACGGGCG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGGCG
18106153 GGTGGGAACT
Statistics
Matches: 185, Mismatches: 31, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
158 2 0.01
159 183 0.99
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CAGCCAGAGGGGCGAGATGCACAAGCCGGGGATCGACCGAGTCCACCACTGTGCGCTACCGATCC
TGCTGCCACAACCCTCGATCCGATCCAAT
Found at i:18107946 original size:159 final size:159
Alignment explanation
Indices: 18107657--18108032 Score: 515
Period size: 159 Copynumber: 2.4 Consensus size: 159
18107647 ACTCCGTATG
* * ** *
18107657 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * *
18107722 CAGCCAGAGGGGCGGGATGCGCAAGCGGGGGATCAGTCGGGTCCACCTCTGTGTGCTGCCGATCC
66 CAGCCAGAGGGGCGAGATGCGCAACCGGGGGATCAGTCGGGTCCACCTCTGTGCGCTACCGATCC
**
18107787 TGCTG-CTGCAACCCTCGGTCTGATCTGAT
131 TGCTGTC-GCAACCCTCGGTCTGATCCAAT
* * *
18107816 CTTAGATTGGGAATAAACTCTGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* *
18107881 CGGCCAGAGGGGCGAGATGCGCAACCGGGGGATCGGTCGGGTCC-CTCTCTGTGCGCTACCGATC
66 CAGCCAGAGGGGCGAGATGCGCAACCGGGGGATCAGTCGGGTCCAC-CTCTGTGCGCTACCGATC
18107945 CTGCTGTCGCAACCCTCGGTCTGATCCAAT
130 CTGCTGTCGCAACCCTCGGTCTGATCCAAT
* * * * *
18107975 CTTTGACTGGCAATGAACT-TCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
1 CTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
18108033 ACTACGTCGG
Statistics
Matches: 190, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
158 2 0.01
159 187 0.98
160 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CAGCCAGAGGGGCGAGATGCGCAACCGGGGGATCAGTCGGGTCCACCTCTGTGCGCTACCGATCC
TGCTGTCGCAACCCTCGGTCTGATCCAAT
Found at i:18108073 original size:159 final size:158
Alignment explanation
Indices: 18107657--18108074 Score: 452
Period size: 159 Copynumber: 2.6 Consensus size: 158
18107647 ACTCCGTATG
* * * * * ** * *
18107657 CTTAGACTAGG-AATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAAGCGCTCAG
1 CTTAGACT-GGCAATAAACTCTGTATGCCTAAGCCAACCCAAGAAACGAGCGGGCGGGCACT-AA
* * * * *
18107721 CCAGCCAGAGGGGCGGGATGCGCAAGCGGGGGATCAGTCGGGTCCACCTCTGTGTGCTGCCGATC
64 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCACCTCTGTGCGCTACCGATC
**
18107786 CTGCTGCTGCAACCCTCGGTCTGATCTGAT
129 CTGCTGCTGCAACCCTCGGTCTGATCCAAT
* * * * *
18107816 CTTAGATTGGGAATAAACTCTGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGCAATAAACTCTGTATGCCTAAGCCAACCCAAGAAACGAGCGGGCGGGCACT-AAC
*
18107881 CGGCCAGAGGGGCGAGATGCGCAA-CCGGGGGATCGGTCGGGTCC-CTCTCTGTGCGCTACCGAT
65 CGGCCAGAGGGGCGGGATGCGCAAGCC-GGGGATCGGTCGGGTCCAC-CTCTGTGCGCTACCGAT
18107944 CCTGCTG-TCGCAACCCTCGGTCTGATCCAAT
128 CCTGCTGCT-GCAACCCTCGGTCTGATCCAAT
* * * *
18107975 CTTTGACTGGCAATGAACT-TCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCACT-AC
1 CTTAGACTGGCAATAAACTCT-GTATGCCTAAGCCAACCCAAGAAACGAGCGGGCGGGCACTAAC
* * *
18108038 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
65 --CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
18108075 ATAGGGTGGT
Statistics
Matches: 223, Mismatches: 28, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
157 2 0.01
158 6 0.03
159 213 0.96
160 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.31, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGCAATAAACTCTGTATGCCTAAGCCAACCCAAGAAACGAGCGGGCGGGCACTAACC
GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCACCTCTGTGCGCTACCGATCCT
GCTGCTGCAACCCTCGGTCTGATCCAAT
Found at i:18109609 original size:26 final size:26
Alignment explanation
Indices: 18109573--18109625 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18109563 CTGATCCGAT
*
18109573 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18109599 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18109625 C
1 C
18109626 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18110308 original size:895 final size:894
Alignment explanation
Indices: 18107816--18116701 Score: 10830
Period size: 891 Copynumber: 10.0 Consensus size: 894
18107806 CTGATCTGAT
* * * * *
18107816 CTTAGATTGGGAATAAACTCTGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * **
18107881 CGGCCAGAGGGGCGAGATGCGCAA-CCGGGGGATCGGTCGGGTCCCTCTCTGTGCGCTACCGATC
66 CGACCAGAGGGGTGGGATGCGCAAGCC-GGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATC
* * * ** * * *
18107945 CTGCTGTCGCAACCCTCGGTCTGATCCAATCTTTGACTGGCAATGAACTTCGTATGCCTAAGCCA
130 CTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
18108010 ACCGACG-AA--A-CGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
195 ACTGACGAAACGAGCGAGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
18108071 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATTTTCATATTTCTACGTGCCAATGCCATTTTTAT
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * *
18108136 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGAGGACTTGT
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
18108201 TTTCTATTTTTCATGATTTTCAAAACTTTTTAG-GGTTCGAGATTTTTTAAAATTGTTTT-GGAA
390 TTTCTATTTTTCACGATTTTCGAAACTTTTT-GTGGTTCGAGATTTTTTAAAATT-TTTTCGAAA
* * * * * *
18108264 GGAGTTTTAGCCACAAACCTGGTAGACATGATCCTTGTATTTTTATTGGCGTGCACAAAAAAATT
453 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * ** *
18108329 CAACTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTTTCCATTTTAGACA
518 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
18108394 CTTTAATGGCTACTGGCAGCAAACTTGCAAAATCGCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
583 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
18108459 GAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACCTCATGC
648 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * **
18108524 ACGCAC-ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGGCGCCAGTCAGGTTCTCCTACGA
713 GCGCACAACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-CGGCGA
* * *
18108588 TGCTCCGGCGATAGTGACCC-GACGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
776 TGCTCCGGCGATGGTG-CCCTGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATG
* *
18108652 TACTGCCGCGA-CC-C--T-CGG--C---C-----C---G---G---TCCG-AT-
840 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18108681 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTTAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *** * * * *
18108746 CGGCAAGAGGGGCAAGATGTGCAAGTCGGGGATCGTTCGGGTCCCCCTCTGCGTGCTATCGATCC
66 CGACCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * ** * *
18108811 TACTGTCGCAACCCTCTGT-TCGGTCCAATCTTAGACTGGGATTGAACTTCGTATGCCTAAGCCA
131 TGCTGCCACAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
18108875 ACCGACCAAACAAGCGGGCGGGCGGGGAGGCAGGCACTACGTCGGCCATTACGCCAGCCAGAGAG
195 ACTGACGAAACGAGCGAGCGGGC------G--GGCACTA---C-G-C----CG--A-CCAGAGAG
*
18108940 ACGTGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
240 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* **
18109005 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCAATTGAAGT
305 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * *
18109070 TTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTGTTTGTGGTTCGAGATTT
370 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGTGGTTCGAGATTT
* ** * *
18109135 TTTAAAATTTTATTCGTAAGGAGTTTTGGCCCCAAACTTCATAGACTTGATCATTGTATTTTTTG
435 TTTAAAATTTT-TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTG
*
18109200 TTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
498 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* ** * * *
18109265 AAGTATCCTTATTTCAGACACTTTAATGGCTACTAGCAGAAAACCTGTAAAATCTTAAATGCTCT
563 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * * * *
18109330 TTAAGAGGGTGTGAGTTCTTGAGATTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACTA
628 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * *
18109395 GCACCCATCGCACATCATGTGCTCACAACCCCCGGGCCCCTCGATCGTCGGAACCCTAATGCCAC
693 GCACCCATCGCACATCATGTGCGCACAACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGC
* *
18109460 CGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCTGATGAAGAAAAATGCGACACCAGCAC
758 CGGTCAGGTTCT-CGGCGATGCTCCGGCGATGGTGCCCTGACGAAGAAAAATGCGACACCAGCAC
* *
18109525 ATGCCCGAGCCCAGCATGTGTTGCCGCAACCCTCGGTCCTGATCCGATCTTAGACTGGGAATGAA
822 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-GGTCCGATCTTAGACTGGGAATGAA
*
18109590 CTCTGTATG
886 CTCCGTATG
* *
18109599 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * *
18109664 CGGCAAGAGGGGTGGGATGCGCAAGCTAGGGATCGACCAGGTCCCCTTCTGCGTGCTGTCGATCC
66 CGACCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * ** *
18109729 TGCTGCCATAACTCTCTGTCTGG-CTGATCTTAGACTAGGAATGAACTCCGTATTTCTTAGCCAA
131 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** *
18109793 -TCGACGAAACGAGCGAGCGGGCGGGCACTACGCCGATAAGAGAGACGGGATGCGCAAGGCGTGG
196 CT-GACGAAACGAGCGAGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGG
* * * *
18109857 ATCGATAGTGTGGTAGGTGGGCTTAGTCACATCTTCATATTTCTTCATGCCAATGCCATTTTTAT
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * *
18109922 GGCTTGTAAATTCATACAACGGTGCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGT
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* **
18109987 TTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGG
390 TTTCTATTTTTCACGATTTTCGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGAAAGG
** * * *
18110052 AAATTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGAACAAAAAAATACA
455 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *
18110117 GCTACAACCTTGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
520 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
18110182 TTAATGGCTACTGGCAACAAACCTGTAAAATCTCAACTGCTCTTTAAGGGGGCGTGAGTTCTCAA
585 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
18110247 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
650 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * *
18110312 GCACACCCCCCTCCCCGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC--CGA-
715 GCACA--ACCC-CCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGGCGAT
* * * * * *
18110374 -------CGATGGTGCCCCGACGAAGGAAAATGTGGCACCAACACATGCCCGAGCCTAGCATGTG
777 GCTCCGGCGATGGTGCCCTGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTG
***
18110432 CTGCCGCAACCCTCGGTCTAATCCGATCTTAGACTGGGAATGAACTCCGTATG
842 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18110485 CTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
18110550 CGGCCAGAGGGGTGAGATACGCAAGCCGGGGATCGATCGGGTCGCCCTCTGCGTGCTGCCGATCC
66 CGACCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * ** *
18110615 TACTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
18110680 CCGATGAAACGAGCGTGCGGGTGGGCAGGCACTACACCGACCAGAGAGACGGGATGCGTAATCCG
196 CTGACGAAACGAGCGAGC----GGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCG
* * * *
18110745 TAGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
257 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * * * *
18110810 TATGGCTTGTAAATTCATACAATGGACCTTTATGCCTTCACATGAAGTTTCATGGCAAGACGAAT
322 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** * * * *
18110875 CGTTTTCTATTTTTCAATATTTTCGAAACCTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGA
387 CGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGAA
* * * *
18110940 AGGAGTTTTGGTCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAAT
452 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
18111005 TCACCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGAC
517 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
18111070 ACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
582 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* ** *
18111135 AGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTGAAGTACCAACACCCATCGCACATCATG
647 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * *
18111200 TGCGCAC-ACCCCCCGGCCACCCGATTGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCAGTGA
712 TGCGCACAACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-CGGCGA
** * * * * * *
18111264 TGCTCCAACGATGGTG-CCTCGACGAGGAAAATTACGGCACCAGCACATGCTCGAGCCTAGCATG
776 TGCTCCGGCGATGGTGCCCT-GACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATG
* * * *
18111328 TGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACACCATATG
840 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** * **
18111383 CTTAGACTAGGAATGCTCTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCATGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
18111448 CGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGGTTGGGTCCCCCTCTGCTTGCTGCCAATCC
66 CGACCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
* ** * * *
18111513 TGTTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * * * *
18111578 -TCAATGAAATGAGCGGGCGGGAAGGGTACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCATG
196 CT-GACGAAACGAGCGAGCGGG-CGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTG
* *** *
18111642 GATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCACTTTTA
259 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* *
18111707 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCACGGCAAGACGACTCG
324 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * * *
18111772 TTTTATATTTTTCACGATTTTCAAAACTTTTTGTGGTTC-AGGATTTTTAAAAATTTTTTTGGAA
389 TTTTCTATTTTTCACGATTTTCGAAACTTTTTGTGGTTCGA-GATTTTTTAAAATTTTTTCGAAA
* * * * *
18111836 GGCGTTTTGGCTCCAAACTTTGTAGACGTCATCCTTTTATTTTTGTTGGCATGCACAAAAAAATT
453 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
18111901 CAGCTAAAAACCCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACA
518 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
18111966 CTTTAATGGGTATTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTC
583 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
18112031 GAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCACACATCATGT
648 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
** * *
18112096 GCGCAC-ACCCCCCGGCCCTCGCC-ATCACCGGATCCCCAATGCCGCCAGTCAGGTTCTC--CG-
713 GCGCACAACCCCCCGGCCC-C-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGGCGA
*
18112156 -G-T-----GATGGTGCCCTGGCGAAGAAAAATGC-AGCACCAGCACATGCCCGAGCCCAGCATG
776 TGCTCCGGCGATGGTGCCCTGACGAAGAAAAATGCGA-CACCAGCACATGCCCGAGCCCAGCATG
* * * * *
18112213 TGTTG-CGCAACCCTCGGTCTGGTCTGATCTAACACTGGGAATGAACTCCGTATG
840 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** * *
18112267 CTTACACTACGAATGAGCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
18112332 CGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGTTGTCGATTC
66 CGACCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * ** *
18112397 TTCTACCACAACCCTCGGTCTGATCTGATCTTAGACTGGTAATGAACTCCGTACACCTAAGCAAA
131 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
18112462 CTGACGAAACGAGC-AGGCGGGCGGGCACTACGCCGACTAGAGAGACGGGATGCGCAAGCCGTGG
196 CTGACGAAACGAGCGA-GCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGG
* *
18112526 ATCGATAGGGTGGTAGGTGGGTTTAAGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
18112591 GGCATGTAAATTCATACAATGGTCCCTTAAG-CTTCACGTGAAGTTTCATGGCAAGACGACTCAT
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
18112655 TTTCTA-TTTTCACGATTTTTGAAACTTTTTTTGGTTTTG-GATTTTTTAAAATTTTTTCGAAAG
390 TTTCTATTTTTCACGATTTTCGAAACTTTTTGTGG-TTCGAGATTTTTTAAAATTTTTTCGAAAG
*
18112718 GAGTTTTGGCCCCAAA-TATGGTAGACGTGATCCTTGTAATTTTGTTGGCATGCA-AAAAAAATT
454 GAGTTTTGGCCCCAAACT-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
18112781 CACCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACA
518 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
18112846 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
583 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
18112911 GAGGTTTGAAGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
648 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* *
18112976 GCGCACACCCCCCCGGCCCCCCCGATCG-CTGGAACCCCAATGCCCCCGGTCAGGTTCTCTGGCG
713 GCGCACAACCCCCCGG-CCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTC-GGCG
* ** * * * *
18113040 ATGCTCCGACGATGGTGCCCTGGTGAAGAAAAATACGGCACCAGCAAATGCTCGAGCCCAGCATG
775 ATGCTCCGGCGATGGTGCCCTGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATG
18113105 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT-GG---G-A------ATG
840 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
18113149 ---A-AC------T---CT--GTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18113199 C-AGCCAGAGGGGCGAGATGCGTAAGCCGGGGATCGATCGGGTCCCCCT-TGCGTGTTGTCGATC
66 CGA-CCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATC
* * * * * *
18113262 CTACTGCCGCAACCCTCAGTCTGGTCTGATCTTAGAGTGGGAATGAACTCTGTATGCTTAAGCCA
130 CTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** *
18113327 ACTGACGGAACGAGCG-GACGGGTAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
195 ACTGACGAAACGAGCGAG-CGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTG
*
18113391 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTA
259 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
18113456 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
324 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * * * *
18113521 TTTTCCATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAACATTTTTTCGGAAG
389 TTTTCTATTTTTCACGATTTTCGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGAAAG
* * * * *
18113586 GATTTTTGGCCACAAACTTGGTAGACATGATCATTGTATTTTTGCTGGCATGCACAAAAAAATTC
454 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
18113651 AGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCTCCATTTCAGACAC
519 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
18113716 TTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCG
584 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
18113780 AGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTG
649 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
18113845 CGCAC-ACCCCCCGGCTCCCTCGATCGGCGGAACCCCAATGCCACCGGTCAGGTTCTTTGGTGAT
714 CGCACAACCCCCCGGC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC-TCGGCGAT
* * * * * *
18113909 GCTCCAGCGATGGTGCCCTGGCGAAGAAAATTGTGTCACCAGCGCATGCCCGAGCCCAGCATGTG
777 GCTCCGGCGATGGTGCCCTGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTG
* *
18113974 CTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATG
842 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18114027 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCGGTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
18114092 CGACCAGAAGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCTCTCTGCATGCTGTCGATCC
66 CGACCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * *
18114157 TGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCGAA
131 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18114222 CTGACGAAAAGAGCG-GTCGGGTGGACGGGAGGGCACTACGTCGACCGGAGAGACGGGATGCGCA
196 CTGACGAAACGAGCGAG-C--G-GG-C----GGGCACTACGCCGACCAGAGAGACGGGATGCGCA
*
18114286 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
252 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
18114351 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
317 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** *
18114416 CGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGCTCGAGATTTTTTAAAATTTTT
382 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTT
* *
18114481 TCGAAAGGAGTTTTGGCCCCAAACTTAGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAA
447 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
18114546 CAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTG-CCCCGTTT
512 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
18114610 CAGACACTTTAATGGCTACAGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGA
577 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * *
18114675 GTTCTCAAGGTTTGATGAGAGATAGGTGGCCAATACAAGGGCCAAGTAGCAGCACCC-TCG-ACA
642 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
18114738 TCATG-GC-CACACCCCCCCAGCCTCCCGATCCGTCGG-ACCCC-ATAACCG-CGGTCAGGTTCT
707 TCATGTGCGCACAACCCCCCGGCCCCCCGAT-CGTCGGAACCCCAAT-GCCGCCGGTCAGGTTCT
* * * *
18114798 CGGCGATGC-CCGGTGATGGCTGACCC-GAATGGAAG-AAAATGCG-TA-CAG--CATG-CTGAG
770 CGGCGATGCTCCGGCGATGG-TG-CCCTG-A-CGAAGAAAAATGCGACACCAGCACATGCCCGAG
* * ** * * *
18114855 CCCAGCATGTGCTGGCTCG-TACCCTCGATCCGGTGTGATTTTAGA-TGGGAATGAACTCTGTGT
831 CCCAGCATGTGCT-GC-CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
18114918 G
894 G
* * * *
18114919 CTTAGATTGGCGAATGAAAT-CGTATGCCTAAGTCAACGCCACGAAACGAGTGTGGTGGGCGCTC
1 CTTAGACTGG-GAATGAACTCCGTATGCCTAAGTCAAC-CCACGAAACGAGCGT-GCGGGCGCTC
** * * * * * *
18114983 AAGCCGACCA-A-GGCAGGTA-GCGTAAGAC-GGGATCGACCGAGTCCCCCTCTACGTGCTGTCG
63 -AGCCGACCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCG
** * * *
18115044 ATCCTGCTGCTGCAACCCTCGATCTGCTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAG
127 ATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
18115109 CCAACTGACGAAACGAATGGGCGGACGGACGGGCGGGCACTACGTCGGCTAGAGAGATGGGATGC
192 CCAACTGACGAAACG-A---GC-GA--G-CGGGCGGGCACTACGCCGACCAGAGAGACGGGATGC
*
18115174 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAAT
249 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
18115239 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
314 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
18115304 AGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATT
379 AGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGTGGTTCGAGATTTTTTAAAATT
* * *
18115369 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGCATGCAC
444 TTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * ** ** *
18115434 AAAAAAATTCAGCCAAAAACACCTAGTGTACAAGATTTTACGACCATTTGAAAAAAGTATCCCCA
509 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * *
18115499 TTTGAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTTAAATGCTCTTTAAGGAGGTG
574 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
18115564 TGAGTTCTCGAGCTTTGAAGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCAC
639 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * ** ** ** *
18115629 ACGTTATGTAAGCA-AACCCCCCAACCCCCCCGATCGTAAGAACCCCAATGCCGCTGGTCAGGTT
704 ACATCATGTGCGCACAACCCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
18115693 CTC--CGA--------CGATGGTGCGCC-GACGAAGAAAAATGCGACACCAGCACATGCCCGAGC
768 CTCGGCGATGCTCCGGCGATGGTGC-CCTGACGAAGAAAAATGCGACACCAGCACATGCCCGAGC
* * ** * * * * *
18115747 CTAGCATGTGCTGTCAAAACCCTCGGTCTGGTCCGATCTTAGATTGGGTATGAACTTCATATG
832 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18115810 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACGACGAAACGAACGTGCGGGCGCTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
18115875 CGACCAGAAGGGTAGGATGTGCAAGCCAGAGATTGACCTGGT---CC-CT-C-T-CTG-CG----
66 CGACCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
* **
18115928 TGCTGCCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
18115993 CCGACGAAACGAGCGAGCAGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAA
196 CTGACGAAACGAGC--G-A-----GCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAA
* *
18116058 GCCGTGGATCGATAGGGTGGTAGGTGGGTGTAGGCACATCTTCATATTTGTGCATGCCAATGCCA
253 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
18116123 TTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGAT
318 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * *
18116188 GACTCGTTTTTTATTTTTCATGATTTTCAAAACTTTTTATGATTCAAGATTTTTTAAAATTTTTT
383 GACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTT
* * *
18116253 CGAAA-GACGTTTTGGCCCCAAACTTGGTAGATGTGATCGTTGTATTTTTATTGGCATGCACAAA
448 CGAAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18116317 AAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
512 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
18116382 CAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
577 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
18116447 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
642 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
18116512 TCATGTGCGCAC-ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCTCCGGTCAGGTTCTC
707 TCATGTGCGCACAACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * ** *
18116576 TGGCAATGCTCCGACGATGGTGCCCCGGTGAAGAAAAGTATG-G-CACCAGCATATGCCCGAGCC
771 -GGCGATGCTCCGGCGATGGTGCCCTGACGAAGAAAA--ATGCGACACCAGCACATGCCCGAGCC
* * ** *
18116639 CAGCATGTGCGGCCGTAATGCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
833 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
18116701 C
1 C
18116702 CTAAGCCAAC
Statistics
Matches: 6937, Mismatches: 859, Indels: 424
0.84 0.10 0.05
Matches are distributed among these distances:
864 1 0.00
865 174 0.03
866 220 0.03
867 260 0.04
868 181 0.03
869 127 0.02
871 1 0.00
872 2 0.00
875 1 0.00
876 2 0.00
877 8 0.00
878 6 0.00
879 4 0.00
880 773 0.11
881 134 0.02
882 45 0.01
883 126 0.02
884 223 0.03
885 55 0.01
886 181 0.03
887 166 0.02
888 28 0.00
889 211 0.03
890 92 0.01
891 1327 0.19
892 255 0.04
893 169 0.02
894 106 0.02
895 702 0.10
896 103 0.01
897 242 0.03
898 340 0.05
899 18 0.00
900 9 0.00
901 61 0.01
902 385 0.06
904 1 0.00
905 1 0.00
906 1 0.00
907 1 0.00
909 7 0.00
910 1 0.00
911 1 0.00
913 1 0.00
916 3 0.00
917 52 0.01
918 129 0.02
919 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CTGACGAAACGAGCGAGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTCGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACAACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGGCGATGCTC
CGGCGATGGTGCCCTGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGC
CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:18110488 original size:26 final size:26
Alignment explanation
Indices: 18110459--18110511 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18110449 CTAATCCGAT
18110459 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18110485 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18110511 C
1 C
18110512 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18114037 original size:26 final size:26
Alignment explanation
Indices: 18114001--18114053 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18113991 CCGGTCCGAT
18114001 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
18114027 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18114053 C
1 C
18114054 ATAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18115835 original size:26 final size:26
Alignment explanation
Indices: 18115784--18115836 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18115774 CTGGTCCGAT
* * *
18115784 CTTAGATTGGGTATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18115810 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18115836 C
1 C
18115837 CTAAGTCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18117991 original size:26 final size:26
Alignment explanation
Indices: 18117962--18118014 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18117952 CCAGTCCGAT
18117962 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18117988 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18118014 C
1 C
18118015 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18118174 original size:575 final size:579
Alignment explanation
Indices: 18117078--18118207 Score: 1480
Period size: 575 Copynumber: 2.0 Consensus size: 579
18117068 TTTGAAAAAA
* *
18117078 GTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAATGCTCTTTA
1 GTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAATGCTCCTTA
18117143 AGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGAAGGCCAATATAGGGCCAAGTACCAGCAC
66 AGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGAAGGCCAATATAGGGCCAAGTACCAGCAC
* * * * * * *
18117208 CCCATCGCACAGCATGTGGTGCATACCCTGGCCCCTCGATCGACCGTACCTCAATGCCGCCGGTC
131 CCCATCACACAGCATGTGGCGCACACCCTGGCCCCACGATCGACCGAACCCCAATGCCGCCAGTC
** **
18117273 AGTCGTTCAACGGTGATGCTCCGACGATGGGTGCCCCGGTGAGAAAAATGTGTGCACCCAGCACA
196 AG-CGTTCAACGACGATGCTCCGACGATGGGTGCCCCGACGAGAAAAATGTGTGCACCCAGCACA
* ** ** *
18117338 GTGCCCGAGCCCAGCATGTGCTGCCCAACCCTTGGTCCGGTCCGATCTTAGACCTGCAAATGAAC
260 GTGCCCAAGCCCAGCATGTGCCACCCAACCCTCAGTCCAGTCCGATCTTAGACCTGCAAATGAAC
*
18117403 TTCTATATGCTTAGACATAGGAATGAACTCCGTATGCCTAAGTCAACAACGAAACAAGCATGCGG
325 TTCCATATGCTTAGACATAGGAATGAACTCCGTATGCCTAAGTCAACAACGAAACAAGCATGCGG
** * ** *
18117468 GCGCTCAGTCGGCCGGAGGGGCGGGATGCGCAAGCTGGGGATCGGTTGGGTCCCCCTCTGCGTGC
390 GCGCTCAACCGGCCAGAGGGAAGGGATGCGCAAGCTGGGGATCGGTTGGGTCCCCCTCTACGTGC
* * * ** *** * * ***
18117533 TTCTGATCTTGCTGGGGCAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTTTGTATGC
455 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCATAGACTAGGAATGAACTCCATATGC
*
18117598 CTAAGCCAACCGACGAAACG-AGGGGCGGGCGGGCACTATGCTTTTGTGTACAAGATTTT
520 CTAAGCCAACCGACGAAACGAAAGGGCGGGCGGGCACTATGCTTTTGTGTACAAGATTTT
*
18117657 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTT
1 GTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC-AATGCTCCTT
*
18117722 AAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATATG-GGGCCAATATAAGGGCCAAGTACCAG
65 AAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA-GAAGGCCAATAT-AGGGCCAAGTACCAG
* * * * *
18117786 CA-CCTATCACACATCATGT-GCGCACACCCCCTGGCACCCACGATCGTCGGAACCCCAATGTCG
128 CACCCCATCACACAGCATGTGGCGCACA--CCCTGGC-CCCACGATCGACCGAACCCCAATGCCG
** *
18117849 CCAGTCAG-GTTCTCCGACGATGTTCC-AGCGAT-GGTGCCCCGACGAAGAAAAATGTG-GCA-C
190 CCAGTCAGCGTTCAACGACGATGCTCCGA-CGATGGGTGCCCCGACG-AGAAAAATGTGTGCACC
* *
18117909 CAGCACA-TGCCCAAGCCCAGCATGTGCCACCGTAACCCTCAGTCCAGTCCGATCTTAGA-CTGG
253 CAGCACAGTGCCCAAGCCCAGCATGTGCCACC-CAACCCTCAGTCCAGTCCGATCTTAGACCTGC
* * * **
18117972 GAATGAAC-TCCATATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATG
317 AAATGAACTTCCATATGCTTAGACATAGGAATGAACTCCGTATGCCTAAGTCAA-CAACGAAACA
* * *
18118035 AGCGTGCGGGTGCTCAACCGGCTAGAGGGAAGGGATGCGCAAG-TCGGGGATCGGTTGGGT-CCC
381 AGCATGCGGGCGCTCAACCGGCCAGAGGGAAGGGATGCGCAAGCT-GGGGATCGGTTGGGTCCCC
* *
18118098 CTCTACGTGCTGCCGATCCTGGTGCCGCAACCCTTGGTCCGGTCCAATCATAGACTAGGAATGAA
445 CTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCATAGACTAGGAATGAA
*
18118163 CTCCATATGCCTAAGCCAACTGACGAAACGAAAGGGCGGGCGGGC
510 CTCCATATGCCTAAGCCAACCGACGAAACGAAAGGGCGGGCGGGC
18118208 GGACGGACAT
Statistics
Matches: 476, Mismatches: 63, Indels: 27
0.84 0.11 0.05
Matches are distributed among these distances:
575 110 0.23
576 84 0.18
577 31 0.07
578 31 0.07
579 71 0.15
580 96 0.20
581 25 0.05
582 28 0.06
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (579 bp):
GTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAATGCTCCTTA
AGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGAAGGCCAATATAGGGCCAAGTACCAGCAC
CCCATCACACAGCATGTGGCGCACACCCTGGCCCCACGATCGACCGAACCCCAATGCCGCCAGTC
AGCGTTCAACGACGATGCTCCGACGATGGGTGCCCCGACGAGAAAAATGTGTGCACCCAGCACAG
TGCCCAAGCCCAGCATGTGCCACCCAACCCTCAGTCCAGTCCGATCTTAGACCTGCAAATGAACT
TCCATATGCTTAGACATAGGAATGAACTCCGTATGCCTAAGTCAACAACGAAACAAGCATGCGGG
CGCTCAACCGGCCAGAGGGAAGGGATGCGCAAGCTGGGGATCGGTTGGGTCCCCCTCTACGTGCT
GCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCATAGACTAGGAATGAACTCCATATGCC
TAAGCCAACCGACGAAACGAAAGGGCGGGCGGGCACTATGCTTTTGTGTACAAGATTTT
Done.