Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 103 of 117
Found at i:18118903 original size:26 final size:26
Alignment explanation
Indices: 18118865--18118915 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18118855 CCAGTCTGAT
* *
18118865 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18118891 CTTAGACTAGGAATGAACTCTGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
18118916 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18121584 original size:26 final size:26
Alignment explanation
Indices: 18121548--18121599 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
18121538 TGGTCCAATA
18121548 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18121574 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18121600 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:18123377 original size:26 final size:26
Alignment explanation
Indices: 18123348--18123398 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18123338 GGTCCGATCC
18123348 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
18123374 TAGACTGGGAATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
18123399 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:18125144 original size:26 final size:26
Alignment explanation
Indices: 18125115--18125167 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18125105 CTGCTCCAAT
*
18125115 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTCTATG
18125141 CTTAGACTGGGAATGAACTCTCTATG
1 CTTAGACTGGGAATGAACTCTCTATG
18125167 C
1 C
18125168 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTCTATG
Found at i:18126041 original size:26 final size:26
Alignment explanation
Indices: 18126012--18126064 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18126002 CCGGTTCAAT
*
18126012 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18126038 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18126064 C
1 C
18126065 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18126303 original size:897 final size:898
Alignment explanation
Indices: 18117657--18130382 Score: 15734
Period size: 899 Copynumber: 14.3 Consensus size: 898
18117647 ACAAGATTTT
*
18117657 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTT
1 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
** *
18117722 AAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGC
66 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * * * * * *
18117787 ACCTATCACACATCATGTGCGCACACCCCCTGGCACCCACGATCGTCGGAACCCCAATGTCGCCA
131 ACCCATCGCACATCATGTGCGCACACCCCCCGGC-CCCCCGATCATCGAAACCCCAATGCCGTCG
* * *
18117852 GTCAGGTTCTCCGACGATGTTCC-AGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACA
195 GTCAGGTTCTCCGGCGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* ** * * *
18117916 TGCCCAAGCCCAGCATGTGCCACCGTAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACT
259 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * *
18117981 CCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGT
324 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * ** * *
18118046 GCTCAACCGGCTAGAGGGAAGGGATGCGCAAGTCGGGGATCGGTTGGGT-CCCCTCTACGTGCTG
389 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTG
* * * ** ** * * *
18118110 CCGATCCTGGTGCCGCAACCCTTGGTCCGGTCCAATCATAGACTAGGAATGAACTCCATATGCCT
454 CCGATCCTGCTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * **
18118175 AAGCCAACTGACGAAACGAAAGGGCGGGCGGGCGGACGGACATTATGTTGGCCAGAGAGACGGGA
519 AAGCCAACCGACGAAACG--A--GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
*
18118240 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCC
580 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
* * *
18118305 AATGCCATTTTTATGGCTTGTAAATTCATACAAAGGTCCTTTAAGCCTTCACGTGAAGATTCATG
645 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * **
18118370 GCAAGACGACTCGTTTTCTATTTTTAACGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAA
710 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAA
* * * *
18118435 ATTTTTTCGGATGGTGTTTTGGCCCCAAA-TATGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
775 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACT-TGGTAGACATGATCCTTGTATTTTTTTTGGCAT
*
18118499 GCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
839 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* *
18118559 GTGTCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
1 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* **
18118624 AAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCATT
66 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * *
18118688 ACCCATCGCACATCATGTGCGCACACCCCCACCCGGCCCCCCGATCGTCGGAACCCCAATGTCGT
131 ACCCATCGCACATCATGTGCGCACA--CCC-CCCGGCCCCCCGATCATCGAAACCCCAATGCCGT
* * * ** * *
18118753 CAGTCAAGTTCAT-CGGTGATGCTCCGGTGATGGTGCCCCGACGAAAAAAAATGTGGCACCAGCA
193 CGGTCAGGTTC-TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
** * * * * *
18118817 CATGCTTGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCAGTCTGATCTTAGATTGGGAATGAA
257 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* * * *
18118882 CTCCGTATGCTTAGACTAGGAATGAACTCTGTATACCTAAGTCAACCCATGAAACGAGCGTGCGG
322 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * *
18118947 GCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGC
387 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGC
* * * * ** ** * * *
18119012 TGCCGATCTTGTTGCTGCCACCCTCAGTTTGATAC-GATCTGAGACTGGGAATGAACTCCATATG
452 TGCCGATCCTGCTACCGTAACCCTCAGTCCGGT-CTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18119076 CCCAAGCCAACAGACGAAACGA----GCGGGCGGGTGGGCACTATGCCGGCCAGAGAGACGGGAT
516 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* *
18119137 GCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCA
581 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* *
18119202 ATGCCATTTTTATGGCTTGTACATTCATACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCATGG
646 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
18119267 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-ACAGTTCGGGATTTTTTAAA
711 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGA-GGTTCGGGATTTTTTAAA
* * * * *
18119331 ATTTTTTCAGATGGATTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG
775 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATG
* * *
18119396 CACAAAAAAATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGGCCATTTGAAAAAA
840 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* *
18119455 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACTTGTAAAATCTCAAATGCTCTTT
1 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * *
18119520 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTTCCAGC
66 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * *
18119585 ACCCACCGCACATCATGTGCGCACAACCCCCCAGCCCCCCGAT-AGTC-AGAACCCCAATGTCGT
131 ACCCATCGCACATCATGTGCGCAC-ACCCCCCGGCCCCCCGATCA-TCGA-AACCCCAATGCCGT
* * * *
18119648 CGGTCAGGTTCTCCGACGATGCTCCGAAGTTGGTGCCCC-AGTGAAGAAAAATGCGGCACCAGCA
193 CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCA
*
18119712 CATGCCCGAGCCCAGCATGTGCTGCCGTAACCCT---T--GGTCCGATC-----C-------GAA
257 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* * * *
18119760 CTTCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGG
322 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
** * * *
18119825 GCATTCAGCCGGCCAGAGGGGCGGGATTCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGC
387 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGC
* * ** ** * * **
18119890 TGCCCATCCTGCTGCCACAACCCTTGGTCCGGTCCGATCTTGGACTGGGAATGAACTTTGTATGC
452 TGCCGATCCTGCTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
*
18119955 CTAAGCCAACCGACGAAACGAGTGGGCGTGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
517 CTAAGCCAACCGACGAAACGA----GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
* *
18120020 GATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCTGCATG
578 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* *
18120085 CCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
643 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
*
18120150 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCA-GTTTGGGATTTTTT
708 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG-AGGTTCGGGATTTTTT
* * *
18120214 AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTATACGTGATCCTTGTATTTTTTTTGG-
772 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGC
**
18120278 ATGCACAAAAAAATTCAATTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
837 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * * *
18120340 ATGTCCCCATTTCAGACACTTTAATTGCTACTAGCAGCAAACCTGTAAAATCTCAATTGCTCTTT
1 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
*
18120405 AAGGGGGTGTGAGTTGTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
66 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
** * * *
18120470 ACCCATCTTACATCATATGCGCACACCCCACCTGGCCCCCCCGATCACCGGAACCCCAATGCCGT
131 ACCCATCGCACATCATGTGCGCACACCCC-CC-GG-CCCCCCGATCATCGAAACCCCAATGCCGT
* * * *
18120535 CGGTCAGGTTCTCCGTCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGACACCAACAC
193 CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * * * * *
18120600 ATGCACGAGCCCAGCATGTGCTGCCACAACCCTTGGTCCAGTCCGATCTTTGATTGGGAATGAAC
258 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
* *
18120665 TCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCTCGAAACGAGCGTGCGGG
323 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * * * * *
18120730 CGCTCAGCTGGCAAGAAGGGCAGGATGTGTACA-CTGGGGATCCGTCGGGTCCCCCTCTATGTGC
388 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCA-AGCCGGGGATCGGTCGGGTCCCCCTCTACGTGC
* * *
18120794 TGCTGATCCTGCTACCGTAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
452 TGCCGATCCTGCTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
18120859 CTAAGCTAACCGACGAAACGAGCGGGCGGTCGGGCGGGCACTACGCTGGCCAAAGAGACGGGATG
517 CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
** * *
18120924 CATAAGCCGAGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
582 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
18120989 TGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
647 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
*
18121054 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCA-GTTTGGGATTTTTTAAAA
712 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG-AGGTTCGGGATTTTTTAAAA
* *
18121118 TTTTTTCGAAAGGAGTTTTGGCCCCAAAACTTGGTATAACAGTG-TCCTTAGTATTTTTTTTGG-
776 TTTTTTCGGAAGGAGTTTTGGCCCC-AAACTTGGTA-GACA-TGATCCTT-GTATTTTTTTTGGC
**
18121181 ATGCACCAAAAAAAATTCAATTAAAAAC-CGAAGTGGTAC-AGAATTTTGTGACCAATTTGAAAA
837 ATGCA-C-AAAAAAATTCAGCTAAAAACTCGAAGT-GTACAAG-ATTTTGTGACC-ATTTG-AAA
18121244 AAA
896 AAA
* *
18121247 GTGTTCCCATTTCAGACACTTTAAATGGCTACTAGCAGCAGAACCTGT-AAATACTCAAAAATGC
1 GTGTCCCCATTTCAGACACTTT-AATGGCTACTGGCAGCA-AACCTGTAAAAT-CTC--AAATGC
**
18121311 TCTTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
61 TC-TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
18121376 ACCAGCACCCATCGTACATCATGTGTGCACACCCCCTGTCGGCTCCCTCGATCATCGAAACCCCA
125 ACCAGCACCCATCGCACATCATGTGCGCACACCCCC---CGGC-CCCCCGATCATCGAAACCCCA
* * *
18121441 CTGCCG-CTGGTCAGGTTCTCCGGCGATGCT----C--TGGT--------GAAGAAAAAAGCAGC
186 ATGCCGTC-GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
* * * * * *
18121491 ACTCAGCACATGCTCGAGGCCAGCATGTGTTGCCGCAACCCTCGGTCTGGTCCAATATTAGACTG
250 AC-CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
*
18121556 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCCACGAAACGA
314 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * **
18121621 GCGTACAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCGATCGCATCCCCCT
379 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCT
* * * * * * * *
18121686 CTGCGTGCTGTCGATCCTACTACCGCAACCCTTAGTCTGGTC-CAGTCTTAGACTGGGATTGAAC
444 CTACGTGCTGCCGATCCTGCTACCGTAACCCTCAGTCCGGTCTGA-TCTTAGACTGGGAATGAAC
* *
18121750 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGC---CACTACGTCGACCAGAGA
508 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
* * *
18121811 GACGGGATGCGTAAGTCGTGGATCGATAGGGT-GTAGGTGGGTTTAGGCGCATCTTCATATTTCT
573 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* *
18121875 ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCCCGTGAAG
638 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * *
18121940 TTTCATGGCAAGACGACTCATTTTCTATTTTTCAGGATTTTTGAAACTTTTT-ACGGTTCAGGAT
703 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGA-GGTTCGGGAT
* * **
18122004 TTTTTAAAATTTTTTCGGAACGAGTTTTAGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTT
767 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTT
* **
18122069 TTGGCATGCATAAAAAAATTCAATTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
832 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
18122134 AA
897 AA
* * * *
18122136 ATGTCCCCATTTCAGACACTTTAATTGCTACTAGCAGCAAACCTGTAAAATCTCAATTGCTCTTT
1 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
*
18122201 AAGGGGGTGTGAGTTGTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
66 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
** * * * *
18122266 ACCCATCTTACATCATATGCGCACACCCCACCTGGCCCCCCCGATCACCGGAACCCCAATACCGT
131 ACCCATCGCACATCATGTGCGCACACCCC-CC-GG-CCCCCCGATCATCGAAACCCCAATGCCGT
* * * *
18122331 CGGTCAGGTTCTCCGCCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGACACCAACAC
193 CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * * * * *
18122396 ATGCACGAGCCCAGCATGTGCTGCCACAACCCTTGGTCCAGTCCGATCTTTGATTGGGAATGAAC
258 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
* *
18122461 TCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCTCGAAACGAGCGTGCGGG
323 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * * *
18122526 CGCTCAGCTGGCAAGAAGGGCGGGATGCGTACA-CTGGGGATCCGTCGGGTCCCCCTCTATGTGC
388 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCA-AGCCGGGGATCGGTCGGGTCCCCCTCTACGTGC
* * *
18122590 TGCTGATCCTGCTATCCGTAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATG
452 TGCCGATCCTGCTA-CCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18122655 CCTAAGCTAACCGACGAAACGAGCGGGCGGTCGGGCGGGCACTACGCTGGCCA-AGAGACGGGAT
516 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
** * *
18122719 GCATAAGCCGAGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
581 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* *
18122784 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTCAGCCTTCACGTGAAGTTTCATGG
646 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * ** * *
18122849 CAAGACGACTTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTTAAA
711 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAA
* ** * * * *
18122914 TTTTTTCGGAAGGATTTTTCACACCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCCTAC
776 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGC
18122979 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
841 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* *
18123037 GTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTT
1 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * * *
18123102 AAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGAGAGGGGGCCAATATAAGGGTCAAGTACCAGC
66 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
*
18123167 ACCCATCGCACATCATGTGCGCACACCCCCCCCTCGGCCCCCTCGATCGTC-AGAACCCCAATGC
131 ACCCATCGCACATCATGTGCGCACA---CCCCC-CGGCCCCC-CGATCATCGA-AACCCCAATGC
* * * ** *
18123231 CGTCGGTCAAGTTCTTCGTCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGACACCAG
190 CGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* * *
18123296 CACATGCCTGAGCCCAGCATGTGCTGCCGCAACACTCGGTCCGGTCCGATCCTAGACTGGGAATG
255 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATG
* *
18123361 AACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGC
320 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * ** * * *
18123426 GGGCGCCCAGTCGGTGAGAGGGGCGGGATGCACAAGCCGGGGATCAGTCGGGTTCCCCTCTACGT
385 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGT
* * * ** ** *
18123491 GCTGCCAATCCTGCTACTGTTACCCTTGGTCTAGTC-GAATCTTGGACTGGGAATGAACTCCGTA
450 GCTGCCGATCCTGCTACCGTAACCCTCAGTCCGGTCTG-ATCTTAGACTGGGAATGAACTCCGTA
* * * *
18123555 TGCCAAAGCCAACCGATG-AA--A-----CGGGCGGGTGGGCACTACGCCGACCAGAGAGACGGG
514 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * **
18123612 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCTTATTTCTGTGTGC
579 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* *
18123677 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGTAGTTTCAT
644 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * * *
18123742 GGCAAGACGACTCATTTTCTATTTTTCATGATTCTCGAAACTTTTTGCGGTTCGGGATTTTTTAA
709 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAA
* *
18123807 AATCTTTTCGGAAGGAGTTTTGGCCCAAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCAT
774 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCAT
18123872 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAA
839 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * * *
18123931 GTATCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGGTCATT
1 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
*
18123996 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGC
66 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * *
18124061 ACCCATCGCACGTCATGTGCGTACACCCCCCCCGACCCCCCCGATCGTC-AGAACCCCAATGCCG
131 ACCCATCGCACATCATGTGCG--CACACCCCCCG-GCCCCCCGATCATCGA-AACCCCAATGCCG
* * * * * * *
18124125 TTGATGAGGTTCTCCGGCGATGCTCCGACGATGGTGACCCGACGATGAGAAATGCGGCACCAGTA
192 TCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* ** *
18124190 CATGCCCAAGCCCAGCATGTGCTATCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAA
257 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* * * *
18124255 CT-C-----C----A-T----ATG----CC---T---T-AGTCAACGCACAAAACGAGCGTACAG
322 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * ** * *
18124294 GCGTTCAGCCGGCC-GAAAGGGTGGGATGCGCAAGTTGGCGATCGATCGGGTCCCCCTCTACGTG
387 GCGCTCAGCCGGCCAG-AGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTG
* *** *
18124358 CTGCCGATCCTGCTACCGTAACCCTCGGTCTAAT-TCGATCTTAGACTGGGAATGAACTCTGTAT
451 CTGCCGATCCTGCTACCGTAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTAT
* * *
18124422 GCCTAAGCCAACCGACGAAATGTGCTGGCTGGCGGGCGGGCGGGCACGACGCCGGCCAGAGAGAC
515 GCCTAAGCCAACCGACGAAACGAGC--G--GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC
* * * * *
18124487 GGGATGCGCAAGCCGTTGATCCATTGGGTGTTAGGTGGGTTTAGGCACATCTTCATATTTATGCA
576 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* * *
18124552 TGACAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTTAAGTTT
641 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * ** * *
18124617 CATGGCAAGACGACTTGTTTTCTATTATTCATGATTTTTGAAACTTTTTTCGGTTTGAGATTTTT
706 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTT
* *
18124682 TAAAATTTTTTCGGAAGGATTTTTGGCCCTAAACTTGGTAGACATGATCCTTGTATTTTTTTTGG
771 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGG
18124747 CATGCACAAAAAAATTCAGCTAAAAACTC-AATGTGTACAAGATTTTGTGACCATTTGAAAAAA
836 CATGCACAAAAAAATTCAGCTAAAAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAA
* *
18124810 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATTTCAAATGCTCTTT
1 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* ** *
18124875 AAGGGGGTTTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGC
66 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * ** *
18124940 ACCCATCGTACATCATGTACGCACACCCCCCCGGCCCCCCCGATCGCCGGAAA-CCCAATGTCGT
131 ACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCATC-GAAACCCCAATGCCGT
* ** ** * * *
18125004 CAGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCCGACGAA-AAAAAAGTGGCACCACCAC
193 CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * * * * * *
18125068 ATGCCTGAGCCCAGCATGTGTTGTCGTAACCCTCGGTCTGCTCCAATCTTAGACTGGGAATGAAC
258 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
* *
18125133 TCTGTATGCTTAGACTGGGAATGAACTCTC-TATGCCTAAGTCAACCCACGAAACGAGCGTACGG
323 TCCGTATGCTTAGACTGGGAATGAACTC-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * *
18125197 GCGCTCAGTCGACCAGAGGGGCGGGTTGCGCAAGCCGGGGATCAGTCGGGTCCCCCTCTACGTGC
387 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGC
* * * ** * *
18125262 TGTCGATCCTACTACCGTAACGCTTGGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGC
452 TGCCGATCCTGCTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
18125327 CTAAGCCAACTGACGAAACGAGTGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGATGGGATG
517 CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * *
18125392 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTACGTGCCAA
582 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* * *
18125457 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCATGTGAAGTTTCATGGA
647 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* ** *
18125522 AAGACGACTCGTTTTATATTTTTCACGATTTTTGAAACTTTTTGATTTTCGGGATTTTTTAAGAT
712 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAAT
** * *
18125587 TTTTTCAAAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCGTGCA
777 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCA
* *
18125652 CAAAAAAATTCAGCTAGAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
842 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* *
18125709 GTGTCCCCATTTCAGACACTTTAATGGCTAC-GGCAGCAAACTTGTAAAATCTCAAATGGTCTTT
1 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
*
18125773 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
66 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
*
18125838 ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTGATCATCGAAACCCCAATGCCGTCGG
131 ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCATCGAAACCCCAATGCCGTCGG
* * * *
18125903 TCAGGTTCTCTGGCGATGGTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGAACATG
196 TCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* * * * * * *
18125968 CTCAAGCCCAGCATGTGCTACCGTAACCCTCAGTCCGGTTCAATCTTAGACTGGGAATGAACTCC
261 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * * ** *
18126033 GTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACTCATGAAGTGAGCATGCGGGCGC
326 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * * * * **
18126098 TCAGCCGACCAAAGGGGCGGGATGCGTAAGCCGGGGATCGGTAGGGTCCCCGTCTACATACTATC
391 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCC
*
18126163 GATCCTGCTACCGTAACCCTCAGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAA
456 GATCCTGCTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * ** * *
18126228 GCCAACCGATGAAATGAGCAAGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCA
521 GCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
18126293 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
586 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
18126358 ATTTTTATGGCTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGA
651 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * ** * * *
18126423 CGACTCATTTTTTATTTTTCAAGATTTTCAAAACGTTTT-ACGATTCGGGATTTTTTAAAAATTT
716 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGA-GGTTCGGGATTTTTTAAAATTTT
* ** * * *
18126487 TT-GAAAGGAGTTTTGGCCATAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCATAA
780 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAA
*
18126551 AAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAA
845 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
*
18126605 GTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
1 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
18126670 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
66 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * * *
18126735 ACCCATCACACATCATCTGCGCACACCCCCCTGGGCCCCCCGATC-GCCAGAACCCCAATGCAGC
131 ACCCATCGCACATCATGTGCGCACACCCCCC--GGCCCCCCGATCATCGA-AACCCCAATGCCGT
* * * *
18126799 CGGTCAGGTTCTCCAGTGATACTCCGACGATGGTGCCCCGACGAAGAAAGATGCGGCACCAGCAC
193 CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * * * *
18126864 ATGCCCGAGCCTAGCATGTGCTGCCGTAACCCCCGGTCTGGCCCGATCTTAGACTGGGAATGAAC
258 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
* *
18126929 TCCGTATGCTTAGACTGGGAATGAATTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
323 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * ** * *
18126994 CTCTCAGCCTGCCAGAGGGGCGGGATGCGCAAGCCGGGTATCGACCGGGTCACCCTTTACGTGCT
388 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCT
* * * ** ** * * * * *
18127059 GTCGATCCTACTGCCACAACGATCAATCCGGTCTAATCTTAGACTGTGAATGAACTCTGCATGCC
453 GCCGATCCTGCTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
18127124 TAAGCCAACCGACGAAACGAGCGGACGAGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGC
518 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* *
18127189 GCAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAAT
583 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* * *
18127254 GCCATTTTTATGGCTTGTAAATTCATACAATGGTTCTTTAAGCCTTCTCGTGAAG-TTC----CA
648 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * ** * * *
18127314 TG--G-CT-G------A---ATCACGATTTTCAAAAC-TTTTGCGGTTCGAGATCTTTTAAAATT
713 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAATT
* * * *
18127365 TTTTCGGAAGGAGTTTTGGCCCTAACCTTGGTAGACATGAT-CTTGTATTTTTGTTGGCCTGCAC
778 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAC
* * * * *
18127429 AAAAAAATTCAGCTAAAACCTCAAAGCGTACAAGAATTTGTGACCATTTGAGAAAA
843 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * * *
18127485 GTGTCCCTAATTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTA
1 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
** * *
18127550 AACAGGGTGTGAGTTCTCAAGGTTTGA-AAGGGGATAGGGGGCCAATATAGGGGGCCAAGTA-CA
66 AAGGGGGTGTGAGTTCTCAAGGTTTGATGA-GGGATAGGGGGCCAATATA-AGGGCCAAGTACCA
* * * ** *
18127613 GCA-CCTTCGCACAATCAATGTACGGCACA-CCCTCGG--CCCTAATCA-CCAGAA-CCCAATG-
129 GCACCCATCGCAC-ATC-ATGTGC-GCACACCCCCCGGCCCCCCGATCATCGA-AACCCCAATGC
* * * **
18127671 CG-CGGTCAGG-TCTTCGACGATGCT-CGGCGATGGTG-CCCGA-GAAG-AAAATGATGCA-CAG
190 CGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* * * * * *
18127729 CACATG-CCGAGCCCTTTGAATGTGCTAACCGCAACCC-C-GTCCGATCCGA-CTTCACGAGTAG
255 CACATGCCCGAGCCC--AGCATGTGCT-GCCGCAACCCTCGGTCCGGTCCGATCTT-A-GACTGG
* *
18127790 GAATGAACTCCATA-GCTTAGAACTGGGAATGAACTCCGTGATGCCTAAGTCAACCCACGAAATG
315 GAATGAACTCCGTATGCTTAG-ACTGGGAATGAACTCCGT-ATGCCTAAGTCAACCCACGAAACG
* * * * * * *
18127854 AGCGTTCGGTGTGCTCAGTC-G-CAAAGGGG-AGGATGTGCAAGCACAGGGATC-GTC-GGTCCC
378 AGCGTGCGG-GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-CGGGGATCGGTCGGGTCCC
* * * * * * * *
18127914 TCT-TGCGTGCTTGTCGAT-CTGCT--TGTTTACCTTCA-TCTGGTCTGATCTTAGAATGGGAAT
441 CCTCTACGTGC-TGCCGATCCTGCTACCG-TAACCCTCAGTCCGGTCTGATCTTAGACTGGGAAT
*
18127974 GAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCAGGTGGACGGGCGGGCGAGTACTAC
504 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G-GG-CGGGCGGGC----ACTAC
* * * * *
18128039 ACCGACCAGAGAGACGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTA-GCTAGA
561 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC-ACA
* *
18128103 TCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAG
625 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * * **
18128168 CCTTTACGTGAAGTTTCATGGCCAGACGACTCGTTTTCTATTTCTCATGATTTTCAAAACTTTTT
690 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * * *
18128233 -ACGATTTGGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAGACTTGGTACACATGAT
755 GA-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGAT
* * *
18128297 CCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGT
819 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
18128362 GACCATTTGAAAAAA
884 GACCATTTGAAAAAA
*
18128377 GTGTCCCCATTTCAGACACTTTAATGGCTACT-GCAGCAAACTTGTAAAATCTCAAATGCTCTTT
1 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* *
18128441 AAGGGGGTGTGCGTTCTCAAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
66 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * **
18128506 ACCCTTCGCACATCATGTACGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCACC
131 ACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCATCGAAACCCCAATGCCGTC
* * * * *
18128571 GGTCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGAGGCACCAGCACA
194 GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
** * * * *
18128636 TGCCCGAGCCTTGAATGTGCTGCCGCAACCCTCGGTCTGGTCGGATCTTAAACTGGGAATGAACT
259 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * * * * *
18128701 CCATATGCTTAGACTGGGAATGAACCCCGTATGCCTAAGCCAACCCACGAAATGAGTGTACAGGC
324 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * **
18128766 GCTCAGCCGGCCAGAGGGGCAGGATGAGCAAGTCGGGGATCGATCGGGTCCCCCTCTGTGTGCTG
389 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTG
* * * * * * *
18128831 TCGATCCCGCTGCTGTAACTCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
454 CCGATCCTGCTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
18128896 AAGCCAACCGACGATACGAGCGGGCGGGCAGGCGGGCACTAAGCCGACCAGAGAGACGGGATACG
519 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * * *
18128961 CAAGCCGGGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATT
584 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* *
18129026 CCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCCTCACGTGAAGTTTCATGGCAA
649 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * * *
18129091 GACGACTCGTTTTCTATTTTTTACGCTTTTCGAAACTTTTT-ACGCTTCAGGATTTTGTAAAATT
714 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGA-GGTTCGGGATTTTTTAAAATT
* * * * * * * *
18129155 TTTTCAGAAGGATTTTTGGCCCCAAACTTCGTAGACGTGATCCTCGTATTCTTGTTGGCATGCAT
778 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAC
*
18129220 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAAATTTTGTGACCATTTGAAAAAA
843 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * **
18129276 GTGTCCCCATTTCATACACTTTAATGGCTACTCGTTGCAAACCTGTAAAATCTCAAATGCTCTTT
1 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
*
18129341 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGC
66 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * ** * *
18129406 ACCTATCACACAATCATGTGTGCACACCCCCCGG-CCCCCGATCGCCGGAACCCTAATGCCGTCG
131 ACCCATCGCAC-ATCATGTGCGCACACCCCCCGGCCCCCCGATCATCGAAACCCCAATGCCGTCG
* * * **
18129470 GTCTGGTTCTCCGGTGATGCTCC-AGCGATGGTGCCCCGGCGAAGAAAAATATGGCACCAGCACA
195 GTCAGGTTCTCCGGCGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
** *
18129534 TGCTAGAGCCCAGCATGTGCTGCCACAA-CC-C--T-C-G---G-TC-----C-----A-G---T
259 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * * *
18129575 CCG-AT-CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACTCACGAAACGAGCGTACAGGT
324 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * * *
18129638 GCTCAGCCGGCCAGAGGGGCAGGATGGGCAAGCCGGGGATCTGCCGGGTGCCCCTCTGCGTGCTA
389 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTG
* ** * * * * * *
18129703 CCGATCCTGCTACCATAACCCTTGGTTCGGTCTAATCTTATACTAGTAATGAACTCTGTATGCCT
454 CCGATCCTGCTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * **
18129768 AAGCCAATCGACAAAACGAGTGGGTAGGCAGGCGGACGGGCACTATGCCGGCCAGAGAGACGATA
519 AAGCCAACCGACGAAACGA--GCG--GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
**
18129833 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCC
580 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
*
18129898 AATGCCATTTTTATGGCTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
645 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * *
18129963 GCAAGATGACTCGTTTTCCA-TTTTCACGATTTTTGAAACTTTTTGCA-GTTCTGGATTTTTTAA
710 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG-AGGTTCGGGATTTTTTAA
* * *
18130026 AATTCTTT-GGAAGGAGTTTTGGCTCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
774 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCAT
* * * *
18130090 GCAC-AAAAAATTCAGCTAAAAACTCAAAGTGTTCAAGATTTTGTGAACATTTGAAAGAA
839 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * *
18130149 GTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGTAAATCTGTAAAATCTCAAATGCTCTTT
1 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * * * *
18130214 AAAGAGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGC
66 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * *
18130279 ACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCATCAAAACCCCAATGTCGTC
131 ACCCATCGCACATCATGTGCGCACA-CCCCCCG-GCCCCCCGATCATCGAAACCCCAATGCCGTC
*
18130344 GGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCG
194 GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG
18130383 GTCCAATCTT
Statistics
Matches: 10322, Mismatches: 1228, Indels: 575
0.85 0.10 0.05
Matches are distributed among these distances:
864 57 0.01
865 6 0.00
866 149 0.01
867 29 0.00
868 44 0.00
869 63 0.01
870 45 0.00
871 14 0.00
872 328 0.03
873 198 0.02
874 65 0.01
875 101 0.01
876 180 0.02
877 97 0.01
878 572 0.06
879 155 0.02
880 210 0.02
881 67 0.01
882 7 0.00
883 47 0.00
884 99 0.01
885 207 0.02
886 275 0.03
887 122 0.01
888 26 0.00
889 36 0.00
890 44 0.00
891 181 0.02
892 286 0.03
893 22 0.00
894 191 0.02
895 600 0.06
896 848 0.08
897 751 0.07
898 238 0.02
899 1179 0.11
900 660 0.06
901 538 0.05
902 233 0.02
903 713 0.07
904 311 0.03
905 48 0.00
906 11 0.00
907 91 0.01
908 20 0.00
909 10 0.00
911 8 0.00
912 93 0.01
913 46 0.00
914 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCATCGAAACCCCAATGCCGTCGG
TCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCC
GATCCTGCTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTTT
TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAA
AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
Found at i:18126947 original size:26 final size:26
Alignment explanation
Indices: 18126911--18126963 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18126901 CTGGCCCGAT
18126911 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18126937 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18126963 C
1 C
18126964 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18127601 original size:13 final size:13
Alignment explanation
Indices: 18127583--18127607 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18127573 TTGAAAGGGG
18127583 ATAGGGGGCCAAT
1 ATAGGGGGCCAAT
18127596 ATAGGGGGCCAA
1 ATAGGGGGCCAA
18127608 GTACAGCACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.40, T:0.12
Consensus pattern (13 bp):
ATAGGGGGCCAAT
Found at i:18128718 original size:26 final size:26
Alignment explanation
Indices: 18128682--18128734 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18128672 CTGGTCGGAT
*
18128682 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACCCCATATG
* *
18128708 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAAACTGGGAATGAACCCCATATG
18128734 C
1 C
18128735 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACCCCATATG
Found at i:18132183 original size:26 final size:26
Alignment explanation
Indices: 18132132--18132184 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18132122 CCAGTCTGAT
* *
18132132 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
*
18132158 CTTAGACTGGGAAGGAACTCCTTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
18132184 C
1 C
18132185 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:18132871 original size:26 final size:26
Alignment explanation
Indices: 18132795--18132873 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
18132785 CCGGTCCAAT
*
18132795 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18132821 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18132847 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18132873 C
1 C
18132874 CTAAGTCGAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18134986 original size:852 final size:855
Alignment explanation
Indices: 18132847--18151067 Score: 12559
Period size: 891 Copynumber: 20.4 Consensus size: 855
18132837 ACTCCGTATG
* * ** * * * *
18132847 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCGACTTACGAAAAGAGCGTTCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
18132912 CAGCCAGAGGGGCGGGATGCACAAGCCAGGGATTGGCTGGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGG-TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * *
18132977 TACTACCGCAATCCTTGGTCTAGTC-TGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 TACTACCGCAACCCTCGGTCT-GACATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * *
18133041 ACTGACCAAACGAGCGGGCGGGCAC-TAC-ACCGACTAGAGGGACGGGATGCGCAAGCCATGGAT
194 ACCGACAAAATGAGC-GGCGGGCACGCACTACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * * * *
18133104 TGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAAT-CAAATTTTTAAG
258 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC-CATTTTTATG
* * *
18133168 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGATGTTTCATGGCAAGACGACTCGTT
322 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
** * * ** *
18133233 TTCTATTTTTCACAATTTTTAAAACGTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTAGAAAGA
387 TTCTATTTTTCATGATTTTTGAAAC-TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * *
18133298 -TTTT----------TTGCTAGACATGATCCTTGTATTTTTTTT-GTATGCACAAAAAAATTCAG
451 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
*
18133351 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTT
516 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
18133416 TAATGGCTACTAGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGA-TTCTCAAG
581 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
18133479 GTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCG
646 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * *
18133544 CAGACCCCCTCGGCCCCCCGATCACCGAAACCCCAA-GCCATCGGTCAGGTTCTCCGGCGATGCT
711 CACACCCCCCCGGCCCCCCGATCGCTGAAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA-G--
* * * * * *
18133608 CCGACGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCTGAGTCAAACATGTGCTG
770 -C--CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * *
18133673 TCGTAACCCACGGTCTGATCCGAT
832 CCGTAACCCTCGGTCTGGTCCGAT
* * *
18133697 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACTAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18133762 CGGCCAGAGAGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGGGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGG-TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * * *
18133827 TACTACCACAACCCTTGGTCTGGTC-TGATCTTAGACTGGGAATGAACTCCATATACCTAAGCCA
130 TACTACCGCAACCCTCGGTCT-GACATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
18133891 ACCGGCGAAATGAGCGGGCAGGCAGGGGAACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
194 ACCGACAAAATGAGC-GGCGGGCA--CGCACTAC--CGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
18133956 GGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
254 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
* * *
18134021 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAGGTTTCATGGCCAGATGACTC
319 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * * * *
18134086 ATTTTTTATTTTTCACGATTTTTGAAAATTTTTGCAGTTCGTGATTTTTTAAACTTTTTTTGGAA
384 ATTTTCTATTTTTCATGATTTTTG-AAACTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* *
18134151 GGATTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
448 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
18134216 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
513 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * ** *
18134281 CTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAGTGCTCTTTAAACGGGTGTGAGTTCTT
578 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
18134346 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
643 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
18134411 GCGCACACCCCCTCGGCCCCCCGATCGCTGAAACCCTAGTGCCGTCGGTTAGGTTCTCCG-G-CG
708 GCGCACACCCCCCCGGCCCCCCGATCGCTGAAACCCCAATGCCGTCGGTCAGGTTCTCCGAGCCG
* * * * * * *
18134474 ATGGTGCCCCAACGATGAAAAATGTGGCACCAGAACATACTCGAGCCCAGCATGTGCTACCGTAA
773 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA
* *
18134539 CCCTTGGTTTGGTCCGAT
838 CCCTCGGTCTGGTCCGAT
* * *
18134557 CTTAGACTGGGAATGAACTCCGTATGCC-AAGGTCAACCCATGAAATGAGCGTGCAGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAA-GTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * * * * *
18134621 TCGGCTAGAAGGGTTGGGTGCGCAAGCCGGGGATCGGCCGGGTCCCCTTTTGCGAGCTACTGATA
65 CCGGCCAG-AGGGGCGGGTGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATC
* * * * *
18134686 CTACTGCTGTAACCCTCGGTCTGACATGATCTTAGACTGGGAATGAACTCTGTATGCCTAACCCA
129 CTACTACCGCAACCCTCGGTCTGACATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
18134751 ACCGACAAAATGATC-GCGGGCACG-AC-ACCGGCCAGAGGGACGGGATGCACAAGCCGTTGATC
194 ACCGACAAAATGAGCGGCGGGCACGCACTACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
** * * *
18134813 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCATTACCATTTTTATGTC
259 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
* *
18134878 TTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTT
324 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
* * * *
18134943 TTATTTTTCATGATTTTTGAAACTTTCTGTGGTTCGGGATTTTTTATAATTTTTTCGGAAAGAGT
389 CTATTTTTCATGATTTTTGAAACTTT-TGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
*
18135008 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCT
453 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
* * *
18135073 AAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTTTCCCAATTTCAGACACTTTA
518 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
18135138 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCCAGGT
583 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * * *
18135203 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATATCAGCACCCATCGTACATCATTTGCGCA
648 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
** *
18135268 CACCCCCCCGGCCCCCCCGATCGCCAAAACCTCAATGCCGTCGGTCAGGTTCTTCGGCGATGCTC
713 CACCCCCCCGG-CCCCCCGATCGCTGAAACCCCAATGCCGTCGGTCAGGTTC-TC--CGA-G--C
* *
18135333 CAATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCACGAGCCCAACATGTGCTGC
771 C---GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* *
18135398 CGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCAT
833 CGTAA-CC-C--T-CGG--------T---CT-GG--T---C-CGAT
* * *
18135444 AAGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTG
1 ---CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* *** * * * * * * * * *
18135509 AGCCGG-CATGAGTGGCAGAACGTGCATGTCGGGGGTCGACCGAGTCCCCTTCTACATGCTGCCG
63 AGCCGGCCA-GAGGGGC-GGGTGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTG
* * * * * * *
18135573 ATCCTGCTGCCACAAACCTCGATCCGATTCA--ATCTTAGACTGAGAATGAACTCCGTATGCCTA
126 ATCCTACTACCGCAACCCTCGGTCTGA--CATGATCTTAGACTGGGAATGAACTCCGTATGCCTA
** * **
18135636 AGCCAACCGATGAAACGAGCGGGCCAGCAGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGC
189 AGCCAACCGACAAAATGAGC-GG-C-G--GGCACGCACTA--CCGGCCAGAGAGACGGGATGCGC
* *
18135701 AAGCCGTGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGC
247 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
* *
18135766 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCCAG
312 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** *
18135831 ACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTT----TAC--GA---TTCGAGA----T
377 ACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * * * *
18135883 TCGGAAGAAGTTTTGGCCCTAAAATTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
442 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
*
18135948 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTG-AAAAAGTGTCCCCATTT
507 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
18136012 CAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
572 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
18136077 GTTCTCGAGGTTTGATGAGGTATAGGGAGCCAATATAAGGGCCAAATACTAGCACCCATCGCACA
637 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
18136142 TAATGTGCGCACACCCCCCCGGCCACCCCGATCGTTGGAACCCCAATGCCG-CTGATCAGGTTCT
702 TCATGTGCGCACACCCCCCCGGCC-CCCCGATCGCTGAAACCCCAATGCCGTC-GGTCAGGTTCT
** *
18136206 CCGGTGATGCTTCGATGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCTCGAGCCC
765 CC---GA-GC--C---GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
18136271 AGCATGTGCTGCCGTAACCCTCGGTCTAGTTCGATCTTAGACTGGGAATGAACTCCGTAT
821 AGCATGTGCTGCCGTAA-CC-C--TC--G---G----T---CT--G---G---TCCG-AT
* * * *
18136331 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCTATCGAAACGAGTGTGCGAGCGCTCA
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGTGCGGGCGCTCA
* * * * ** *
18136396 ACCGACAAGAGGGGTGGGATGCGCAAGCCGGGGATCGATTGGGTCTCCCTCTGCGTGCTG-TCGA
64 GCCGGCCAGAGGGGCGGG-TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCT-GA
* * * * * * *
18136460 TCCTGCTATCGGAACCCTCAGTTCGGTCCA--ATCTTAGGCTGGGAATGAACTCCGTATGCCTAA
127 TCCTACTACCGCAACCCTC-GGTCTG-ACATGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
18136523 GCCAACCGATAAAACGAGCAGACGGGCGGGCGGGCAGGCACTACGTCGGCAAGAGAGACGGGATG
190 GCCAACCGA-CAAA--A--TGA---GC-GGCGGGCACGCACTAC--CGGCCAGAGAGACGGGATG
* * *
18136588 CGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTACATGCCAA
244 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
18136653 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
309 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* *
18136718 AAGATGACTCGTTTTCTATTTTTCATGATTTTCT-AAACTTTTTGCGGTTCGGGATTTTTTAAAA
374 AAGACGACTCATTTTCTATTTTTCATGATTTT-TGAAAC-TTTTGCGGTTCGGGATTTTTTAAAA
* * *
18136782 TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCATGC
437 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
* *
18136847 ACAAAAAAATTCAGCTAAAACCTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
502 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
18136912 CATTTCAGACACTTTACTGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAA-GGGG
567 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
18136976 CGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCTATC
632 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * * * *
18137040 GCACACCATGTGTGCACA-CCCCCTGTCTCTCCCGATCACCTG-AACCCCAATGCTGCCGGTCAG
697 GCACATCATGTGCGCACACCCCCCCGGC-CCCCCGATC-GCTGAAACCCCAATGCCGTCGGTCAG
* *
18137103 GTTCTTCGACGATGCTCCGGCTATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCG
760 GTTC-TC--CGA-G--CC-G--ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * * *
18137168 AGCCCAGGATGTGCTGTCGCAACCCTCGGTCCGGTTCGAT
816 AGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGAT
* * * *
18137208 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGGTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * ** ** * * *
18137273 CGGACTGAGGGGCGGCATGAGAAAGCCGAGGATCGATTGGGTTTCCTTCTTCGTACTG-TCGATC
66 CGGCCAGAGGGGCGG-GTGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCT-GATC
* * * ** * *
18137337 CTACTACCGTAACCCTCAGTCTAGTTCA--ATCTTAGACTACGAATGAACTTCGTATGCCTATGC
129 CTACTACCGCAACCCTCGGTCT-G-ACATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* *
18137400 CAACCGACAAAATGAGCGGGCGGGCGGGCGGGTAGGCACTACACCGACCAGAGAGACGGGATGCG
192 CAACCGACAAAATGA----GC-GGCGGGC----ACGCACT--ACCGGCCAGAGAGACGGGATGCG
* * * * *
18137465 CAAGTCGTGGATCGATAGGGTAGTAGGTGGGTTTTGGCACATCTTCATATTTCTACGTGCAAAGG
246 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
*
18137530 CCATTTTTATAGG-TTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTCATGGCA
311 CCATTTTTAT-GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * ** * *
18137593 AGACTACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGAGGTTCGAGATTTTTTAAAATT
375 AGACGACTCATTTTCTATTTTTCATGATTTTTGAAAC-TTTTGCGGTTCGGGATTTTTTAAAATT
* * * * *
18137658 TTTTCGAAAGGAGTTTTGGCCCCAATCTTTGTAGACGTGATCGTTGTATTTTTGTTGGCATGCAC
439 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
* *
18137723 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCTCA
504 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
18137788 TTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
569 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
18137853 TGCAGTTCTCAAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCG
634 TG-AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
18137918 CACATCATGTGCGCACA-CCCCCCGGCCCCTCAATCG-TCAGAACCCCAATGCCGCCGATCAGGT
698 CACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCTGA-AACCCCAATGCCGTCGGTCAGGT
*
18137981 TCTCCGACAATGCTCTGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAGATGCCCGAG
762 TCTCCG---A-GC-C----GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * ** *
18138046 CCAAGCATGTGCTACCATAACCCTCAGTCCAGTCTGAT
818 CCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGAT
* * * *
18138084 CTTAGACTGGGAATGAACTCCGTATGCCTTAGTAAACCCAAGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18138149 CGGCCAGAGGGGCGGGATGTGCAAGCTGGGGATCGACCAGGTCCCCCTCTGCGTGCTGGTGATCC
66 CGGCCAGAGGGGCGGG-TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * * * ** *
18138214 TGCTACAGCAGCCCTCGATC-CAGTGTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGCCA
130 TACTACCGCAACCCTCGGTCTGA-CATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
18138278 ACCGACAAAATGAGCAGGCGGCGGGTGGACGGGCACTACGTCGGCCAGAGAGACGGGATACGCAA
194 ACCGACAAAAT--G-A-GCGGC-GG-GCAC--GCACTAC--CGGCCAGAGAGACGGGATGCGCAA
* * * *
18138343 GCCGTGGATCAATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCTAATGCCA
249 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
*
18138408 TTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
314 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
18138473 GACTCGTTTTCTATTTTTTATGATTTTTGAAACTCTTTGAGGTTTGGGATTTTTTAAAATTTTTT
379 GACTCATTTTCTATTTTTCATGATTTTTGAAACT-TTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * *
18138538 TGGAAGGATTTTTGGCCCCAATCTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAA
443 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * *
18138603 AAATTCAGCTACAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
508 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
18138668 AGACACTTTAATGG-TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
573 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
18138732 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
638 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
18138797 CATGTGCGCACAACCCCCCCGGCACCCCCGATCGCCGAAACCCCGATGCCGCCGGTCAGGTTCTC
703 CATGTGCGCAC-ACCCCCCCGGC-CCCCCGATCGCTGAAACCCCAATGCCGTCGGTCAGGTTCT-
* * *
18138862 CGGCGATGCTCCGACGATGGTGCCCCGGCAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
765 C--CGA-G---C--CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * *
18138927 ACATGTGCTACCGCAACCTTCGATCCGATTTGATCTTAGACTGGGAATGAACTCTGTAT
822 GCATGTGCTGCCGTAACC--C--T-CG----G----T---CT-GG--T---C-C-G-AT
* * ***
18138986 GCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGATCGTATTGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * **
18139051 CCGGCCAGAGGGGAGGGATGCTCAAGCCGGGGATCGGTCGGGT-CCCCTCTGTGTGCTGCCAATC
65 CCGGCCAGAGGGGCGGG-TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATC
* * ** * * * *
18139115 CTGCTGCTACAACCCTTGGTCCGGTC-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CTACTACCGCAACCCTCGGT-CTGACATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** * *
18139179 AACCGACGAAATGAACGGGCGGGGGGACGGGCGGGCACTACGCCGGCCAGAGAGAAGGGATGCGT
193 AACCGACAAAATG-A---GC----GG-CGGGCACGCACTA--CCGGCCAGAGAGACGGGATGCGC
** * * * * *
18139244 AAGCAATGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTTTGCATGGCAATGC
247 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
* * * * ** ** * * ** ****
18139309 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT-GTGCGC--ACACCCCCCGACCCCCC
312 CATTTTTATGG-CTTGTA--A--ATTCAT---ACA--ATGGT-CCCTTA-AGCCTTC-A-CGTGA
* * * * * * * * ** * * ** **
18139371 CG-ATCGTCGG--A-AC-CCT-A-ATGCCACTAGTCA-GGTTCTCTGGTGA-TGGTGCCCCGGTG
363 AGTTTCAT-GGCAAGACGACTCATTTTCTATTTTTCATGATT-T-TTGAAACTTTTG---CGGT-
** ** ** *** ** *** * * ** ** * * * *
18139427 AAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCT-GCTGCAACCCT--CAGTC-T
421 TCGGGATTTTTTA-A--A--ATTTTTTCG-G--AAGGA-GTTTTGGCCCCAAACTTGGTAGACGT
** * * * ***** * * * * **
18139488 GATCC--G-ATCTTAGATTGGGAATGAAC-TCCGTA-T--GCT-TACACTGGGAA-TGAACTCCG
477 GATCCTTGTAT-TT-TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT-CGAAGTGTAC-AAG
** * * * ** * ** * *** * **
18139544 TATGCCTAAGTCAACCCA--CGCAACGAGCGTGCGGGCGTTT-AGTTGGC--CAGA-GG-GGC-G
538 -AT---TTTGT-GA-CCATTTGAAAAAAGTGT-C-CCCATTTCAG-ACACTTTA-ATGGCTACTG
* * * ** ** * * * * * * * *
18139601 GGATGCATAAGCCAAGGATCGAT-TC-GTTCCCCTACTACGTGCTGGTGATCA-TGCTACCA--T
593 GCA-GCA-AA-CC-TGTA-AAATCTCAAATGCTCT-TTAAG-G-GGGTG-TGAGTTCT-CGAGGT
**** * ** * * * *
18139661 AACCCTCA--G-TCCGGTG-CAATCTTAGACTGGG--AA-TGA--A-CTCCGTAT-GC-CTAAGT
648 -TTGATGAGGGATAGGGGGCCAAT-ATA-A--GGGCCAAGT-ACCAGCACC-CATCGCAC--A-T
*** ***** * ** ** ** **** *
18139714 CAACCGACG-A-AATGAGCGGGCCCAAACTTGGGAT-TTTTTAA----AATTTTTTCGG-GAGGA
703 CATGTG-CGCACACCCCCCCGGCCC---C--CCGATCGCTGAAACCCCAATGCCGTCGGTCA-G-
* * ** ** ** * * **** * ** *
18139771 GTTTTGGCCCCAAAC-ATGGTAAACGTGATCCATGTATTTTTGTTGGCATGCACCAAAAAATTCA
760 GTTCT---CCGAGCCGATGGT-GCCCCGA-CGAAG-A---AAAAT-GC-GGCACCAGCACA-T--
*** * * * * ** * * * * **** *
18139835 GCTAAAAACTC-GAACTGTACAAGATTTCATGACCATTTGAAAAAAGTGTCCCCAT
811 GC-CCGAGCCCAGCA-TGT----GCTGCCGTAACC-CTCG--GTCTG-GT-CCGAT
** * * ** * ** * * ** * *
18139890 -TTCAGACACT-TTAATGGCTACTCACAGCAAACCT--GTAAAATCTC-AAATGCTCTTTAAGGG
1 CTT-AG--ACTGGGAAT-G-AACTC-C-GTATGCCTAAGTCAACCCACGAAACGAGC-GT--GCG
* * ** ** * *** * * * **
18139950 GGTG-TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC-CAATATAAGGGCCA-AGTACCAGCAC
56 GGCGCTCAG--C-C--GG--CCA-GAGGG-GCGGGTGCGC-A-AGCCGGG-GATCG-ACCGGGTC
* * * * * * * * * *
18140012 CCATCGCACAT-CATG-TGC-G-TAC-AC-CCCCCGACCCGCCCGATC-G-C-TGGAACCCTAGT
108 CC--C-CTC-TGCGTGCTGCTGATCCTACTACCGC-AACC-CTCGGTCTGACAT-G-ATCTTAG-
* * ** * ** * ** * * * * *
18140068 GCCGCCAGTCAGGTTCTCCGGTGATGCTTCGGCGATGGTGCCTCGACGAAGAAAATTA-CTGC-A
164 ACTG---GGAATGAACTCC-GT-ATGCCTAAGCCA-----AC-CGAC----AAAATGAGCGGCGG
* * * * * * * * * * ** * ** * ** *
18140131 CCA-ACACATGCCCGAGCC-CAG-CATGTGCTGCCGTAA-CCCTCAATCCAGTCCGATCTTAGAC
214 GCACGCAC-T-ACCG-GCCAGAGAGACGGGATG-CGCAAGCCGTGGATCGA-TAGGGTGGTAG-G
* * * * ** * * * **** * ** *
18140192 TGGG--AATGAAC-TC-T-GTATGCCTA--AGCCAACCGACGA-AACGAGCGGGCGGGCAGGCAC
273 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA-TG-CCATTTTTA--TGGCTTGTA---A-
** * * * * ** * * *
18140249 TACGCCGGCCAGAGAGACGGGATGCGC--AAGCCGTGGATCGAT-AGGGTGGT-AGGTTGGTTTA
330 -A-----TTCATACA-A-TGG-T-CCCTTAAGCC-TTCA-CG-TGA-AGT-TTCA---TGG--CA
* ** ** * *
18140310 GGTAC-ATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAA-TTCATACAATGGT
375 AG-ACGA-C-TCAT-TTTCTATTTTTC-ATG--A---TT-T---TTG-AAACTT-TTGC---GGT
* *** **** * ** * ** ** * **
18140373 CCCTTAAGCCTTCACGTGATGTTTCATGGCAAGAAGACTCGTTTTCTACTTTTCACGA-TTTTTG
421 TCGGGATTTTTTAAAAT--TTTTTC--GG-AAG--GA---GTTTT-GGC--CCCA-AACTTGGT-
* ** * ** ** *** * ** * ** ** *** *
18140437 AAAC-TTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTA
471 AGACGTGAT-C-CTTGTATTTTTTTTGGCA----TGCACAAAAAAATTCAGCTAAAAAC-TCG-A
* ** * * *** **
18140501 GATGTGATCCTTGTATTTTTCTTG-GCA--TGCACAAAAAGAATAAG-CTAAAAAGTCGAAGTGT
528 -A-GTG-TACAAG-A-TTTT-GTGACCATTTG-A-AAAAAG--T--GTC-CCCATTTC--A--G-
* ** * * * * * ** *** * *
18140562 ACAAGATTTTGTGACCATTTG-A-AAAAAGTGTCCCCATTTCAAA--CACTTTAATGGCTATTGG
575 AC-A-CTTTAATGGCTACTGGCAGCAAACCTGT-AAAATCTCAAATGCTCTTT-A-----A--GG
* * * * *
18140623 CAGCAAACCGGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGATGATGGA
629 --G------GG-----TGTGAGTT-CTC------GAGGTTTGA----T-GAGG---GAT-A--G-
* * * * *
18140688 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCAAGTGCGCACACCCCCCCAG
662 --GGGGCCAA-TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
* * * *
18140753 CCCCCCTATCG-TCGGAACCCCAATGCCG-CTGGTCAGGTTCTCTGA--CGATGGTGCCCC-ACA
724 CCCCCCGATCGCT-GAAACCCCAATGCCGTC-GGTCAGGTTCTCCGAGCCGATGGTGCCCCGACG
* * *
18140813 AAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAATCCTCGGTCTGATC
787 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA-CC-C--TC-G---
18140878 TGATCTTAGACTGGGAATGAACCCTGTAT
844 -G----T---CT-GG--T----CC-G-AT
* * *
18140907 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCACTCAA
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *** *
18140972 CCGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCGGTTGGGTCCCCCTATGCGTGCTGCTGATC
65 CCGGCCAGAGGGGCGGG-TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATC
* * * * *
18141037 CTGCTACCACAACCCTCGATTCGGTC-TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CTACTACCGCAACCCTCG-GTCTGACATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* **
18141101 AACCGACGAAACTAGCGGGCAGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGC
193 AACCGAC-AAA--A---TG-A-GC-GGCGGGCACGCACTAC-C-GGCCAGAGAGACGGGATGCGC
* * * *
18141166 AAGCCATGGATCGTTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
247 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
*
18141231 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
312 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * **
18141296 ACTACTCGTTTTCTATTTTTCAGGATTTTTGAAACTTTTTACGGTTCGATATTTTTTAAAATTTT
377 ACGACTCATTTTCTATTTTTCATGATTTTTGAAAC-TTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * *
18141361 TTCGGAAGGGGTTTTGGCCCCTAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
441 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
* *
18141426 AAAAATTCAGCTAAGAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATT
506 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
18141491 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
571 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
** *
18141556 AGTTCTCGAGGTTTGATGAGGGATAGGGGGAGAATATAAGGGCCAAGTACTAGCACCCATCGCAC
636 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
18141621 ATCATGTGCGCACA-CCCCCCGGCCCCCCCGATTG-TCGGAACCCCAATGTCGCCAGTCAGGTTC
701 ATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGCT-GAAACCCCAATGCCGTCGGTCAGGTTC
* * **
18141684 TTCGA--CGA---TGCTCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
764 TCCGAGCCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * *
18141744 GTGCCGCAACCCTCGGTCCGATCCGATCGTAACTGGGAATGAACTT
829 CTGCCGTAACCCTCGGT-C--T--G---GT--C------CG-A--T
* *
18141790 CATATGCTAAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCATGCGGGCG
1 C---T--T-AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
** * * ** *
18141855 CTCAGGAGGCAAGACGGGCGGGATGCGCAAGCCGGGGATCGATTGGGTCCCCCTCTACGTGCTGC
60 CTCAGCCGGCCAGAGGGGCGGG-TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGC
** * * * * *
18141920 TGATCCTGGTACTGTAACCCTCAGTCTGGTC-CGAT-TTAGACTGGGAATGAACTCCGTATGCCT
124 TGATCCTACTACCGCAACCCTCGGTCT-GACATGATCTTAGACTGGGAATGAACTCCGTATGCCT
* *
18141983 AAGCCAACCGACAAAACGAGCAGGCGGGCGGGTGGGCAGGCACTACGTCGGCCAGAGAGACGGGA
188 AAGCCAACCGACAAAA--TG-A-GC-GGC----GGGCACGCACTAC--CGGCCAGAGAGACGGGA
* * *
18142048 TGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTTTACGTGCC
242 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
* * *
18142113 AAAGCAATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
307 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * *
18142178 GCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTACGGTTCGGGATTTTTCAAA
372 GCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAAC-TTTTGCGGTTCGGGATTTTTTAAA
* * * * *
18142243 ATTTTTTCGGAAGGAGTTTTGGCCACAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGTACG
436 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG
* * *
18142308 CACAAAAAAATTCACCTAAAAACTAGAAGAGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCC
501 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
18142372 CCATTTCAGACACTTTAATAGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
566 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * **
18142437 GTGTGAGTTCTCAAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCTTCACCCAT
631 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * ** *
18142502 CACACATCATGTGCACACACCCCCCCGGCCCCTATGATCG-TCGAAACCCCAATGTCGAT-GGTC
696 CGCACATCATGTGCGCACACCCCCCCGGCCCC-CCGATCGCT-GAAACCCCAATGCCG-TCGGTC
* * * *
18142565 AGGTTCTTCGGTGATGCTCTGGCGATGGTGCCCCGACGAAGAAAATTACGGCACCTGCACATGCC
758 AGGTTC-TC--CGA-G--C---CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * ** * * * ** *
18142630 CAAGCCTAG--TCCGAT--CTTAGA--CTAGGAATGAACTCCGTAT
814 CGAGCCCAGCATGTGCTGCCGTA-ACCCTCGGTCTG--GTCCG-AT
* * * *
18142670 GGTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * ** * *
18142735 TCGGCCAGAGGTGCGGGATGCGCAAGTCGGGGATCAACCGGATCCGTCTCAGCGTGCTGTTGATC
65 CCGGCCAGAGGGGCGGG-TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATC
* ** * * * *
18142800 CTGCTACCATAACCCTCAGTCCGACCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCG
129 CTACTACCGCAACCCTCGGTCTGACATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * * *
18142865 ACCGATGAAACGA---GCGGGCAGGCACTACGCCGGCCAGAGAGACGGAATGTGCAAGCCGTGGA
194 ACCGACAAAATGAGCGGCGGGCACGCACTA--CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
18142927 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGA-GTGCCAATGCCATTTTTAT
257 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACGTGCCAATGCCATTTTTAT
* * *
18142991 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTAAAGTTTCATGGCAAGACGACTCGT
321 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
* * * * *
18143056 TTTCTATTTTTCATGATTTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAA-GTTTTCAGAAG
386 TTTCTATTTTTCATGA-TTTTTGAAAC-TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* * * * * *
18143120 GATTTTTGTCCCCAAACTTGGTAGACATGATCCTTCTATTTTTGTTGGCATGCATAAAAAAATTC
449 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
* *
18143185 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTGCTCATTTCAGACAC
514 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* ** * *
18143250 TTTAATGGCTACTGGCAGCAAACCTGTAATATCTCAAATGCAATTTAATGGGGTGTGAGTTCTCA
579 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
18143315 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGCACCAGCACCCATCACACATCATGTG
644 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *
18143380 CGCACACCCCCTCGGCCCCCCGATCGC-CAGAACCCCAATGCCGTCGGTTAGGTTCTCCGACGAT
709 CGCACACCCCCCCGGCCCCCCGATCGCTGA-AACCCCAATGCCGTCGGTCAGGTTCT-C--CGA-
* * *
18143444 GCTCCGACGATGGTGCCCCGACGAAGAAATATACGGCACGAGCACATGCCCGAGCCCAGCATGTG
769 G---C--CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
*
18143509 CTGCCGCAACCCTCGATTCGGTTCGATCATAGACTAGGAATGAACTCTGTAT
829 CTGCCGTAA-CC-C---TC-G---G----T---CT-GG--T---C-C-G-AT
* * **
18143561 GCTTAGACTGGGAGTGAACTTCGTATGCCTAAGTCAACCCACGAAATAAGCGTGCGGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
18143626 CCGGCCAAAGTGGCGAGATGTGCAAGCCGGGGATCGATCGGGTCCTCCTCTACGTGCTGCTGATC
65 CCGGCCAGAGGGGCG-GGTGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATC
* *** * *
18143691 CTGCTACCGCAACCCTATTTCTGGTC-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CTACTACCGCAACCCTCGGTCT-GACATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** * * * **
18143755 AACTGACGGAACGA---GCGGGCAGGCACTACGTCGGCCAGAGACACGGGATGCGCAAGTTGTGG
193 AACCGACAAAATGAGCGGCGGGCACGCACTAC--CGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
18143817 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
256 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
* * * * *
18143882 GGTTTGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGAGGACTCGT
321 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
* ** * **
18143947 TTTATATTTTTCACAATTTTTGAAACTTTTCACGGTTCCAGATTTTTTAAAATTTTTTC-GAATG
386 TTTCTATTTTTCATGATTTTTGAAACTTTT-GCGGTTCGGGATTTTTTAAAATTTTTTCGGAA-G
* * * * **
18144011 GATTTTTGGACCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCTTAAAAAAATTC
449 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
* * *
18144076 AGCTAAAAAACTCGAAGTGTACAAGATTTTCTAACCATTTGAAAAAAGTGTTCCCATTTCAGACA
514 AGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
18144141 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
578 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
18144206 CAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACAAGCACCCATCGCACATCATGT
643 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
** * * * * * * *
18144271 TTGTACA-CCCCCCGGCCCCCCGATCACCGGAACCCTAATGTCGCCGGTCAGGTTCTCCGACGAC
708 GCGCACACCCCCCCGGCCCCCCGATCGCTGAAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA-
*
18144335 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTG
769 G---C--CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * ** *
18144400 CTGCTGCAACCCTTAGTCTGGTGCGAT
829 CTGCCGTAACCCTCGGTCTGGTCCGAT
18144427 CTTAGACTGGGAATGAACTCGATATGCTTAGACTGCGAATGAACTTAATATGCCTAAGTCAACCC
1 CTTAGACT-GG---GAA-T-GA-A--C-T---C--C----G-------TATGCCTAAGTCAACCC
* * * * * **
18144492 ATGAAACGAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCGGCATGCACAAGCCGGGCATCGGTCG
40 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG-GTGCGCAAGCCGGGGATCGACCG
* ** * * ** * * *
18144557 GGTCCTCCTCTATGTGCTGTTGATCCTACTACTGCAACCCTCAATTTGGTC-TGATCTTAGACTT
104 GGTCCCCCTCTGCGTGCTGCTGATCCTACTACCGCAACCCTCGGTCT-GACATGATCTTAGACTG
* ** *
18144621 GGAATGAACTCTGTATGCCTAAGCCAACCGACAAAACAAGCGGTCGGGTGGGTGGGCAAGCACTA
168 GGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAGCGG-C--------GGGCACGCACTA
*
18144686 CGCCGGCCAGAGAGATGGGAT-----AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
224 --CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * *
18144746 TCTACATATTTCTACGTGTCAAGGCCATTTTTATGGCTTGTAAATTCATACAATCGTCCCTTAAG
287 TCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * * *
18144811 CTTTCACGCGAAGTTTCACGGCAAGATGACT-TTTTTCTATTTTTCATGATTTTTGAAACCTTTT
352 CCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAA-CTTTT
* * * *
18144875 GCAGTTTGGGATTTTTTAAAATTTTGTT-GGAATGAGTTTTGGCCCCAAACTTGGTAGATGTGAT
416 GCGGTTCGGGATTTTTTAAAATTTT-TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
18144939 CCTTGTATTTTTTTTGTCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTACTAGATTTTGT
480 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * * *
18145004 GAGCATTTAAAAAAAGTGTCGCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAA
545 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
18145069 TCTCAAATGCTCTTTAAGGGGGTGTCATTTCTCGAGGTTTGACGAGGGATAGGGGGCCAATATAA
610 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * *
18145134 GGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCTGGCCCCCCCGATCGCCGG
675 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGCTGA
* **
18145198 AACCCCAATGCCGTAGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGTGCCGACGAA-AAAAA
739 AACCCCAATGCCGTCGGTCAGGTTCT-C--CGA-G--C---CGATGGTGCCCCGACGAAGAAAAA
* *
18145262 TGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCCT-CCATAACCCTCGATCTGGTCCGATTTA
795 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTG-CTGCCGTAA-CC-C--TC--G---G---T-
18145326 GACTGGGAATGAACTCCGTAT
846 --CT--G---G---TCCG-AT
* *
18145347 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
18145412 TCGGCCAGAGGGGCAGGATGCGCAAGCC-GGGATTCGACTGGGTCTCACTCTACGTGCTGTTCAT
65 CCGGCCAGAGGGGC-GGGTGCGCAAGCCGGGGA-TCGACCGGGTCCCCCTCTGCGTGCTGCTGAT
* * * * *
18145476 ACTGCTACCGCAACCCTCAGTCTGGTC-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
128 CCTACTACCGCAACCCTCGGTCT-GACATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
** * * * * *
18145540 CAACCGATGAAATGTGTGGGCGGGTAGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
192 CAACCGACAAAATGAG-CGGCGGGCACGCACTA--CCGGCCAGAGAGACGGGATGCGCAAGCCGT
*
18145605 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
254 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
* *
18145670 ATGGCTTGTAAATTCATACAA-CGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTC
319 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * ** ** *
18145734 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTATGGTTCGGGATTTTTTAAATTTTTTTCGGAA
384 ATTTTCTATTTTTCATGATTTTTGAAAC-TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* *
18145799 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATT
448 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
* * * *
18145864 CAGCTAAAAAATCGAAGTGTGCAAAATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACA
513 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
18145929 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTATGAGTTCTT
578 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* ** * *
18145994 GAGGTTTAATGAGAAATA-GAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAACATGT
643 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * *
18146058 GCGCACACCCCCCCGTCGGCCCCCCCGATCACCGGAACCCTAATGCCGTAGGTCAGGTTCTCCGA
708 GCGCACA-CCCCCC--CGG-CCCCCCGATCGCTGAAACCCCAATGCCGTCGGTCAGGTTCT-C--
* * *
18146123 CGATGCTCTGGCAATAGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCA
766 CGA-GC-C--G--ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* *
18146188 TTTGCTGTCGTAACCCTCGGTCCAGTCCGATGTTAGACTAGGAATGAACTCCGTAT
825 TGTGCTGCCGTAA----C---CC--T-CG--G-T---CT--G---G---TCCG-AT
*
18146244 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * *
18146309 CCGGCCAGAGGGGTGGGATGCGCAAGCC-GGGATTCGATTGGGTCCCACTCTACGTGCTG-TCGA
65 CCGGCCAGAGGGGCGGG-TGCGCAAGCCGGGGA-TCGACCGGGTCCCCCTCTGCGTGCTGCT-GA
* * * * * *
18146372 TACTGCTACCGTAACCCTCAGTCTGGTC-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
127 TCCTACTACCGCAACCCTCGGTCT-GACATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * *
18146436 CCAACCGACGAAATGAGTGGGCGGGTAGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAACTG
191 CCAACCGACAAAATGAG-CGGCGGGCACGCACTA--CCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
18146501 TGGATCGATAGGGTGGTAGGTGGGTTTAGG-ACATCTTCATATTTCTGCATGCCAATGCCATTTT
253 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
* *
18146565 TATGGCTTGTAAATTCATACAACGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACT
318 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** *
18146630 CATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
383 CATTTTCTATTTTTCATGATTTTTGAAAC-TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
* *
18146695 AGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
447 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* * * *
18146760 TCAGCTAAAAAATCGAAGTGTACAAAATTTTGTGGCAATTTTGAAAAAAGTGTCCCCATTTCAGA
512 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGA
* *
18146825 CACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGAGTTC
576 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
** * *
18146890 TCGAGGTTTGATGAGAAATA-GGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGGACATCAT
641 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * **
18146954 GTGCGCACA-CCCCCCGGCCCCCCGATCGCCGGAACCCTGATGCCGTCGGTCAGGTTCTCCGATG
706 GTGCGCACACCCCCCCGGCCCCCCGATCGCTGAAACCCCAATGCCGTCGGTCAGGTTCTCC---G
* * * *
18147018 ATGCTCTGGCAATAGTGCCCCGACGAAG-AAAATGTGGCACCAGCACATGCCCGAACCCAGCATT
768 A-GC-C--G--ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* *
18147082 TGCTGCCGCAACCCTCGGTCCGGTCCGAT
827 TGCTGCCGTAACCCTCGGTCTGGTCCGAT
* * ** * * * * * *
18147111 CTTAGACTAGGAATGAACTCCGTATG-CTTAG---A--CTGGGAATGAAC-TCCGTATGC-CTAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG--GGCGCTCA
*** * ** * * ** * ** * **
18147168 GTCAACCCATTA--AACGAGTGTGCATCCCAGGGATCGGTCGGGTCCCCCTCTGCGTCCTGCCAA
64 G-CCGGCCA-GAGGGGCGGGTGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGA
* ** * * *
18147231 TCCTAC-AGCCGCAACCATCAATC-CA-ATCCAATCTTAGACTGGGAATGAACTCCGTATTCCTA
127 TCCTACTA-CCGCAACCCTCGGTCTGACAT--GATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * ***
18147293 AACCAATCGACGAAACGAGTTG-GCGGGCGGGTGGGCACTATGCCGGCCAGAGAGACGGGATGCG
189 AGCCAACCGAC-AAA--A--TGAGC-GGCGGGCACGCACTA--CCGGCCAGAGAGACGGGATGCG
* * * *
18147357 CAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTGATACTTCTACATGCCAATG
246 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
*
18147422 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCGTTCACGTGAAGTTTCATGGCAA
311 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * *
18147487 GATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTT
376 GACGACTCATTTTCTATTTTTCATGATTTTTGAAAC-TTTTGCGGTTCGGGATTTTTTAAAATTT
*** * ** ** * * * *
18147552 TTTCGGAAGGAGTTTTGGCATAAAAATCAGTAGAAATCATCCTTGTGTTCTTGTTGGCATGCACA
440 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
* * * * * *
18147617 AAAAAATTTAGCTAAAAAATCGAAGTGTACAAGATGTGGTGACCATTTGAAAAAAATGTCCTCAT
505 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
18147682 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
570 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * * * * *
18147747 GAGTTCTTGAGGTTTGATGAGGGATAGAGGTCCTATGTAAGGGCCAAGTAGCAGCACCCATCACA
635 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
18147812 CATCATGTGCGAACACCCCCCACCCGGCCCCCTCGATCG-TCGAAACCCCAATACCGTCGGTC-G
700 CATCATGTGCG--CACACCCC-CCCGGCCCCC-CGATCGCT-GAAACCCCAATGCCGTCGGTCAG
* * *
18147875 ATTCTCTGACGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCA
760 GTTCTC---CGA-G---C--CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* *
18147940 AGCCCAGCATGTGCTGTCGCAACCCTCCATCTGGTCCGATCTTAGATTGGGAATGAACTCCGTAT
816 AGCCCAGCATGTGCTGCCGTAA--C-CC-TC--G---G-TC------T--G---G---TCCG-AT
* ** * *
18148005 GCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATAAAACGAGCGTACGGGGGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * ** * * *
18148070 CCAACCAGAAGGGTGGGATACGCAAGCCGAAGATCGATCGGGTGCCCCTCTGTGTGCTG-TCGAT
65 CCGGCCAGAGGGGCGGG-TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCT-GAT
* * * **
18148134 CCTGCTACCACAACCCTCGGTCTGGTC-TGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGC
128 CCTACTACCGCAACCCTCGGTCT-GACATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* *** * *
18148198 CAACCGACGAAACGAGCGGGCAGGCGGGCGGGTGGGCACTACGCCGGCCAAATAGACGGGATGCG
192 CAACCGAC-AAA--A---TG-A-GC-GGCGGGCACGCACTA--CCGGCCAGAGAGACGGGATGCG
* *
18148263 CAAGCCGTGAATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
246 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
* *
18148328 CCATTTTTATGGCTTCTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAA
311 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * **
18148393 GATGACTCGTTTTCTATTTATCATAATTTTTGAAACTTTTTGAAGTTCGGGATTTTTTAAAATTT
376 GACGACTCATTTTCTATTTTTCATGATTTTTGAAAC-TTTTGCGGTTCGGGATTTTTTAAAATTT
* * * * *
18148458 TTTTGGAAGTAGTTTTGGCCCCAAACTTAGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACA
440 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
* * *
18148523 AAAAAATTCAGCCAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCAT
505 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
18148588 TTCAGACAATTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGT
570 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
18148653 GAGTTCCCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCTATCGTA
635 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
18148718 CATCATGTGCGCACACCCCCCTCGGCCCCCACGATCG-TCGGAACCCCAATGCCGCCGGTCAGGT
700 CATCATGTGCGCACACCCCCC-CGGCCCCC-CGATCGCT-GAAACCCCAATGCCGTCGGTCAGGT
* * * *
18148782 TCTCTGGAGATGCTCCAGCGATGGTGCCCC-AGCGAAGAAAAATGCAGCACCAGCGCATGCCCAA
762 TCTC---CGA-G---C--CGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * * *
18148846 GCCCAGTATTTGCTACCGCAACCCTTGGTCCGATCCGATCTTAGACTGGAAATAAACTCCATAT
817 GCCCAGCATGTGCTGCCGTAACCC----T-CG----G----T---CTGG--------TCC-GAT
* * * * * * *
18148910 GCTTAGACTAGGAATGAACTCCGCATACCCAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAA
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** * *
18148975 CCAGCCAGAGGGGCGGGATGCGCAACCCGAGGATCGACTGGGTCCCCCTCTATGTGTTGCCGATC
65 CCGGCCAGAGGGGCGGG-TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATC
* * * *
18149040 CTA-TGCCACAACCCTCGGTCTGGTC-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CTACTACCGCAACCCTCGGTCT-GACATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * *
18149103 AACCGACGAAATGAACGGGTGGGCAGGCACTACGCCGGCCAGAGAGACGGCATGCGCGAGCCATG
193 AACCGACAAAATGAGC-GGCGGGCACGCACTA--CCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
18149168 GATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CAATGCCAATGCCATTTTT
255 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC-GTGCCAATGCCATTTTT
*
18149232 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGACGACTC
319 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * ** * *
18149297 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCTGTTCAAGATGTTTTAAAATTTTTTCAGAA
384 ATTTTCTATTTTTCATGATTTTTGAAAC-TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* * * *
18149362 GGGGTTTTCGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATT
448 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
* * * *
18149427 CAGCTCAAAACTCAAATTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
513 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
18149492 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
578 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
18149557 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
643 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
18149622 GCGCACACCCCCCTCGGCCACACTGATCG-TCGGAACCCCAATGCCACCGGTCAGGTTCTCCGAT
708 GCGCACACCCCCC-CGGCC-CCCCGATCGCT-GAAACCCCAATG---CC-GTC-GG---T-C-A-
* *
18149686 GGTGCTCCGGCGATGGTGCTCTAGTGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATG
759 GGTTCT-C--CGA----GC-C----GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* * *
18149751 CTCGAGCCCAGCGTGTGCTGCCGCAACCATCAGTTCGGTCTGATCTTAGACTGGGAATGAACTTC
812 CCCGAGCCCAGCATGTGCTGCCGTAACC--C---TC-G---G----T---CT-GG--T---C--C
18149816 GTAT
853 G-AT
** * * ** *
18149820 GCTTAGACTGTTAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTAGGCGCTCAA
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *** * * * *
18149885 TCGGCCAGAGGGGCGGCATGCACAAGCCGGAGATCGGTTGGGTCCCCCTTTGTGTGCTACCGATC
65 CCGGCCAGAGGGGCGG-GTGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATC
** * *
18149950 CTACTACCATAACCCTCGATCTGGTCAT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CTACTACCGCAACCCTCGGTCT-GACATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
** *
18150014 AACCGACGAAACGA-GCAAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCATG
193 AACCGAC-AAA--ATG--AGC-GGCGGGCACGCACTAC--CGGCCAGAGAGACGGGATGCGCAAG
*
18150078 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCAT
250 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
* * *
18150143 TTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACA
315 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
18150208 ACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
380 ACTCATTTTCTATTTTTCATGATTTTTGAAAC-TTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
* * ** *
18150273 AGAAGGGGTTTTCACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
444 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* * *
18150338 AATTCAGCTCAAAACTCGAAGTGTACAAGATTTTATGATCATTTGAAAAAAGTGTCCCCATTTCA
509 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
18150403 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATCCTCTTCAA-GGGGTGTGAGT
574 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
18150467 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
639 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * ** **
18150532 ATGTGTGCACACCTCCCCGACCCCCCGATTACT-AGAACCCCAATGCCACCGGTCAGGTTCTCCG
704 ATGTGCGCACACCCCCCCGGCCCCCCGATCGCTGA-AACCCCAATGCCGTCGGTCAGGTTCTCC-
* * * *
18150596 GTGATGCTCCGGGGATGGTGCCCTGATGAAAAAAAATGCGGCCCCAGCACATGCCCGAGCCCAGC
767 --GA-G--CC---GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * *
18150661 ATGTGCTGTCGCAACCCTCGGTCTGGTCCAAT
824 ATGTGCTGCCGTAACCCTCGGTCTGGTCCGAT
* * * *
18150693 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTTAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
18150758 CGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATTGATCGGGTCCCCCTCTACGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGG-TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * * * * * *
18150823 TGCTGCTGCAACCCTTGGTCCGGTCCA--ATATTAGACTGGCAATGAACTCCGTATGCCTAAGCC
130 TACTACCGCAACCCTCGGT-CTG-ACATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * ** ** * *
18150886 AACCGACGAAACGAGTAGGTAGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGTAAGCCGTG
193 AACCGACAAAATGAG-CGGCGGGCACGCACTA--CCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
18150951 GATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATCCCATTTTTA
255 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
* *
18151016 TGGCTTGTAAATTCAGACAATGGTCCCTTATGCCTTCACGTGAAGTTTCATG
320 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
18151068 TACAAGATTT
Statistics
Matches: 14066, Mismatches: 2313, Indels: 1966
0.77 0.13 0.11
Matches are distributed among these distances:
850 189 0.01
851 6 0.00
852 451 0.03
853 36 0.00
854 6 0.00
855 2 0.00
856 202 0.01
857 8 0.00
858 8 0.00
859 92 0.01
860 253 0.02
861 13 0.00
862 3 0.00
863 179 0.01
864 695 0.05
865 206 0.01
866 38 0.00
867 34 0.00
868 327 0.02
869 79 0.01
870 106 0.01
871 37 0.00
872 171 0.01
873 13 0.00
874 337 0.02
875 583 0.04
876 590 0.04
877 159 0.01
878 12 0.00
879 6 0.00
880 9 0.00
881 9 0.00
882 10 0.00
883 16 0.00
884 10 0.00
885 318 0.02
886 385 0.03
887 435 0.03
888 143 0.01
889 64 0.00
890 394 0.03
891 877 0.06
892 565 0.04
893 87 0.01
894 16 0.00
895 250 0.02
896 838 0.06
897 671 0.05
898 361 0.03
899 12 0.00
900 199 0.01
901 69 0.00
902 286 0.02
903 268 0.02
904 254 0.02
905 282 0.02
906 485 0.03
907 23 0.00
908 31 0.00
909 10 0.00
910 202 0.01
911 91 0.01
912 34 0.00
913 25 0.00
914 115 0.01
915 446 0.03
916 50 0.00
917 59 0.00
918 34 0.00
919 26 0.00
920 46 0.00
921 49 0.00
922 18 0.00
923 12 0.00
924 9 0.00
925 2 0.00
926 3 0.00
928 3 0.00
929 4 0.00
931 11 0.00
932 11 0.00
933 14 0.00
934 7 0.00
936 7 0.00
937 1 0.00
938 5 0.00
939 1 0.00
940 1 0.00
941 2 0.00
942 11 0.00
943 9 0.00
944 7 0.00
945 9 0.00
946 5 0.00
947 8 0.00
948 2 0.00
949 14 0.00
951 4 0.00
953 9 0.00
954 9 0.00
955 6 0.00
957 5 0.00
958 6 0.00
959 1 0.00
961 2 0.00
963 4 0.00
964 2 0.00
965 2 0.00
966 13 0.00
967 2 0.00
968 16 0.00
969 1 0.00
970 10 0.00
971 8 0.00
972 3 0.00
973 1 0.00
974 2 0.00
975 12 0.00
976 2 0.00
977 2 0.00
978 2 0.00
979 1 0.00
980 3 0.00
981 10 0.00
982 4 0.00
983 3 0.00
984 3 0.00
986 3 0.00
988 3 0.00
989 4 0.00
990 8 0.00
991 3 0.00
992 11 0.00
993 8 0.00
994 7 0.00
996 1 0.00
997 4 0.00
998 3 0.00
999 12 0.00
1000 14 0.00
1001 36 0.00
1002 23 0.00
1003 3 0.00
1004 20 0.00
1005 34 0.00
1006 17 0.00
1007 10 0.00
1009 2 0.00
1010 3 0.00
1011 6 0.00
1012 3 0.00
1013 10 0.00
1014 11 0.00
1015 21 0.00
1016 10 0.00
1017 14 0.00
1018 18 0.00
1019 19 0.00
1020 5 0.00
1021 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (855 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGTGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCCT
ACTACCGCAACCCTCGGTCTGACATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACAAAATGAGCGGCGGGCACGCACTACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT
ATTTTTCATGATTTTTGAAACTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
CCCCCCGGCCCCCCGATCGCTGAAACCCCAATGCCGTCGGTCAGGTTCTCCGAGCCGATGGTGCC
CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGT
CTGGTCCGAT
Found at i:18136344 original size:26 final size:26
Alignment explanation
Indices: 18136306--18136358 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18136296 CTAGTTCGAT
*
18136306 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18136332 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18136358 C
1 C
18136359 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18137508 original size:875 final size:871
Alignment explanation
Indices: 18132847--18139294 Score: 7186
Period size: 876 Copynumber: 7.3 Consensus size: 871
18132837 ACTCCGTATG
* * ** * * *
18132847 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCGACTTACGAAAAGAGCGTTCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-
* * * * * * * *
18132912 CAGCCAGAGGGGCGGGATGCACAAGCCAGGGATTGGCTGGGTCCCCCTCTGCGTGCTGCCGATCC
65 CCGGCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
18132977 TACTACCGCAATCCTTGGTCTAG-TCTGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 TACTACCGCAA-CCCTCGTCT-GTTC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
18133041 ACTGAC-CAA--A-C--G-AGCGGGC--G-GGCACTACACCGACTAGAGGGACGGGATGCGCAAG
192 ACCGACAAAATGAGCGGGCGGCGGGCGGGAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * * * *
18133096 CCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAAT-CAAA
257 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC-CA
* * *
18133160 TTTTTAAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGATGTTTCATGGCAAGAC
321 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** * * *
18133225 GACTCGTTTTCTATTTTTCACAATTTTTAAAACGTTTTGCGGTTTGGGATTTTTTAAAATTTTTT
386 GACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTT
* * * * *
18133290 TAGAAA-GA-TTTT----------TTGCTAGACATGATCCTTGTATTTTT-TTTGTATGCACAAA
450 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
18133342 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
18133407 CAAACACTTTAATGGCTACTAGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGA
580 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
18133471 -TTCTCAAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * **
18133535 TCATGAGCGCAGACCCCCTCGGCCCCCCGATCACC-GAAACCCCAA-GCCATCGGTCAGGTTCTC
710 TCATGTGCGCACACCCCC-CGGCCCCCCGATCGCCTG-AACCCCAATGCCGCCGGTCAGGTTCTC
* * * * * *
18133598 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCTGAGTCAA
773 CGGCGATGCTCCGGCTATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
* * * * * *
18133663 ACATGTGCTGTCGTAACCCACGGTCTGATCCGAT
838 GCATGTGCTGCCGTAACCCTCGGTCCGGTTCGAT
* * *
18133697 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACTAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18133762 CGGCCAGAGAGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGGGTGCTGCCGATCC
66 CGG-CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * *
18133827 TACTACCACAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATACCTAAGCCAA
130 TACTACCGCAACCC-TCGTCTGTTC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18133892 CCGGCGAAATGAGCGGGCAGGC-AG-GGGA---ACTACGTCGGCCAGAGAGACGGGATGCGCAAG
193 CCGACAAAATGAGCGGGC-GGCGGGCGGGAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
18133952 CCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
257 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
* * *
18134017 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAGGTTTCATGGCCAGATG
322 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * * * *
18134082 ACTCATTTTTTATTTTTCACGATTTTTGAAAATTTTTGCAGTTCGTGATTTTTTAAACTTTTTTT
387 ACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
* * * *
18134147 GGAAGGATTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
452 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
18134212 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
517 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * **
18134277 GACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAGTGCTCTTTAAACGGGTGTGAGT
582 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
18134342 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
647 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
18134407 ATGTGCGCACACCCCCTCGGCCCCCCGATCG-CTGAAACCCTAGTGCCGTCGGTTAGGTTCT-C-
712 ATGTGCGCACACCCCC-CGGCCCCCCGATCGCCTG-AACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * *
18134469 -CG--G---C-G--ATGGTGCCCCAACGATGAAAAATGTGGCACCAGAACATACTCGAGCCCAGC
775 GCGATGCTCCGGCTATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
* * ** *
18134525 ATGTGCTACCGTAACCCTTGGTTTGGTCCGAT
840 ATGTGCTGCCGTAACCCTCGGTCCGGTTCGAT
* * *
18134557 CTTAGACTGGGAATGAACTCCGTATGCC-AAGGTCAACCCATGAAATGAGCGTGCAGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAA-GTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * * * *
18134621 TCGGCTAGAAGGGTTGGG-TGCGCAAGCCGGGGATCGGCCGGGTCCCCTTTTGCGAGCT-ACTGA
65 CCGGC-AG-AGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTC-GA
* * * * * * *
18134684 TACTACTGCTGTAACCCTCGGTCTG-ACATGATCTTAGACTGGGAATGAACTCTGTATGCCTAAC
127 TCCTACTACCGCAACCCTC-GTCTGTTCA--ATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
18134748 CCAACCGACAAAATGA----TC-GCGGGC---ACG-AC-A--CCGGCCAGAGGGACGGGATGCAC
189 CCAACCGACAAAATGAGCGGGCGGCGGGCGGGAGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* ** * *
18134801 AAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCATTAC
254 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
* *
18134866 CATTTTTATGTCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
319 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
18134931 ACAACTCATTTTTTATTTTTCATGATTTTTGAAACTTTCTGTGGTTCGGGATTTTTTATAATTTT
384 ACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* *
18134996 TTCGGAAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAA
449 TTC-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
18135060 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTTTCCCAAT
513 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
18135125 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
578 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * * *
18135190 GAGTTATCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATATCAGCACCCATCGTA
643 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* ** * *
18135255 CATCATTTGCGCACACCCCCCCGGCCCCCCCGATCGCCAAAACCTCAATGCCGTCGGTCAGGTTC
708 CATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGCCTGAACCCCAATGCCGCCGGTCAGGTTC
* ** * *
18135320 TTCGGCGATGCTCC-AATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCACGAGC
771 TCCGGCGATGCTCCGGCT-ATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
* * *
18135384 CCAACATGTGCTGCCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCAT
835 CCAGCATGTGCTGCCGTAA-CC-C--T-CGG-----TC-----C--GG--T----TCGAT
* * *
18135444 AAGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTG
1 ---CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * * * * * * * *
18135509 AGCCGGCATGAGTGGCAGAACGTGCATGTCGGGGGTCGACCGAGTCCCCTTCTACATGCTGCCGA
63 AGCCGGCA-GAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGA
* * * * * *
18135574 TCCTGCTGCCACAAACCTCGATCCGATTCAATCTTAGACTGAGAATGAACTCCGTATGCCTAAGC
127 TCCTACTACCGCAACCCTCG-TCTG-TTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
** * * * *
18135639 CAACCGATGAAACGAGCGGGCCAGCAGGC--G-GGCACTATGCCGGCCAGAGAGACGGGATGCGC
190 CAACCGACAAAATGAGCGGG-CGGCGGGCGGGAGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* *
18135701 AAGCCGTGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGC
254 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
* *
18135766 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCCAG
319 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
18135831 ACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTC--G--------AGA----
384 ACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * * *
18135882 TTCGGAAGAAGTTTTGGCCCTAAAATTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
449 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
18135947 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTG-AAAAAGTGTCCCCATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
18136011 TCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
18136076 AGTTCTCGAGGTTTGATGAGGTATAGGGAGCCAATATAAGGGCCAAATACTAGCACCCATCGCAC
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
18136141 ATAATGTGCGCACACCCCCCCGGCCACCCCGATCG-TTGGAACCCCAATGCCGCTGATCAGGTTC
709 ATCATGTGCGCACA-CCCCCCGGCC-CCCCGATCGCCT-GAACCCCAATGCCGCCGGTCAGGTTC
* * * * *
18136205 TCCGGTGATGCTTC-GATGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCTCGAGC
771 TCCGGCGATGCTCCGGCT-ATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
18136269 CCAGCATGTGCTGCCGTAACCCTCGGTCTAGTTCGATCTTAGACTGGGAATGAACTCCGTAT
835 CCAGCATGTGCTGCCGTAA-CC-C--TC--G---G-TC-----C--GG--T----T-CG-AT
* * * *
18136331 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCTATCGAAACGAGTGTGCGAGCGCTCA
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGTGCGGGCGCTCA
* * * ** *
18136396 ACCGACAAGAGGGGTGGGATGCGCAAGCCGGGGATCGATTGGGTCTCCCTCTGCGTGCTGTCGAT
64 GCCGGC-AGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGAT
* * * * * *
18136461 CCTGCTATCGGAACCCTCAGTTCGGTCCAATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCC
128 CCTACTACCGCAACCCTC-G-TCTGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
18136526 AACCGATAAAACGAGCAGACGGGCGGGCGGGCAGGCACTACGTCGGCAAGAGAGACGGGATGCGC
191 AACCGACAAAATGAGCGGGC-GGCGGGCGGG-AGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
18136591 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTACATGCCAATGC
254 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
18136656 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
319 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
18136721 ATGACTCGTTTTCTATTTTTCATGATTTTCT-AAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
384 ACGACTCATTTTCTATTTTTCATGATTTT-TGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
*
18136785 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCATGCACA
448 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
18136850 AAAAAATTCAGCTAAAACCTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
513 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
18136915 TTCAGACACTTTACTGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAA-GGGGCGT
578 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
18136979 GAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCA
643 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * * * *
18137043 CACCATGTGTGCACACCCCCTGTCTCTCCCGATCACCTGAACCCCAATGCTGCCGGTCAGGTTCT
708 CATCATGTGCGCACACCCCCCGGC-CCCCCGATCGCCTGAACCCCAATGCCGCCGGTCAGGTTCT
* * * **
18137108 TCGACGATGCTCCGGCTATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
772 CCGGCGATGCTCCGGCTATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
* * *
18137173 AGGATGTGCTGTCGCAACCCTCGGTCCGGTTCGAT
837 AGCATGTGCTGCCGTAACCCTCGGTCCGGTTCGAT
* * * *
18137208 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGGTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** ** * * *
18137273 CGGACTGAGGGGCGGCATGAGAAAGCCGAGGATCGATTGGGTTTCCTTCTTCGTACTGTCGATCC
66 CGG-CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* ** * *
18137338 TACTACCGTAACCCTCAGTCTAGTTCAATCTTAGACTACGAATGAACTTCGTATGCCTATGCCAA
130 TACTACCGCAACCCTC-GTCT-GTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
18137403 CCGACAAAATGAGCGGGCGGGCGGGCGGGTAGGCACTACACCGACCAGAGAGACGGGATGCGCAA
193 CCGACAAAATGAGCGGGC-GGCGGGCGGG-AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
18137468 GTCGTGGATCGATAGGGTAGTAGGTGGGTTTTGGCACATCTTCATATTTCTACGTGCAAAGGCCA
256 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
*
18137533 TTTTTATAGG-TTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTCATGGCAAGA
321 TTTTTAT-GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** * *
18137596 CTACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGAGGTTCGAGATTTTTTAAAATTTTT
385 CGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * *
18137661 TCGAAAGGAGTTTTGGCCCCAATCTTTGTAGACGTGATCGTTGTATTTTTGTTGGCATGCACAAA
450 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
18137726 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCTCATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
18137791 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGC
580 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG-
* * *
18137856 AGTTCTCAAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCAC
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
18137921 ATCATGTGCGCACACCCCCCGGCCCCTCAATCGTCAGAACCCCAATGCCGCCGATCAGGTTCTCC
709 ATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCTGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * *
18137986 GACAATGCTCTGG-TGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAGATGCCCGAGCCAA
774 GGCGATGCTCCGGCT-ATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
* * * *
18138050 GCATGTGCTACCATAACCCTCAGTCCAG-TCTGAT
838 GCATGTGCTGCCGTAACCCTCGGTCCGGTTC-GAT
* * * *
18138084 CTTAGACTGGGAATGAACTCCGTATGCCTTAGTAAACCCAAGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
18138149 CGGCCAGAGGGGCGGGATGTGCAAGCTGGGGATCGACCAGGTCCCCCTCTGCGTGCTGGT-GATC
66 CGG-CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCT-GTCGATC
* * * * * *
18138213 CTGCTACAGCAGCCCTCGATCCAGTGT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAAGCC
129 CTACTACCGCAACCCTCG-T-CTGT-TCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
18138277 AACCGACAAAATGAGCAGGCGGCGGG-TGGACGGGCACTACGTCGGCCAGAGAGACGGGATACGC
191 AACCGACAAAATGAGCGGGCGGCGGGCGGGA--GGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * *
18138341 AAGCCGTGGATCAATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCTAATGC
254 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
*
18138406 CATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
319 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
18138471 ACGACTCGTTTTCTATTTTTTATGATTTTTGAAACTCTTTGAGGTTTGGGATTTTTTAAAATTTT
384 ACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * * * *
18138536 TTTGGAAGGATTTTTGGCCCCAATCTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAA
449 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
18138601 AAAAATTCAGCTACAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
18138666 TTAGACACTTTAATGG-TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
18138730 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
18138795 ATCATGTGCGCACAACCCCCCCGGCACCCCCGATCGCC-GAAACCCCGATGCCGCCGGTCAGGTT
709 ATCATGTGCGCAC-A-CCCCCCGGC-CCCCCGATCGCCTG-AACCCCAATGCCGCCGGTCAGGTT
* * * *
18138859 CTCCGGCGATGCTCCGACGATGGTGCCCCGGCAAAGAAAAATGTGGCACCAGCACATGCCCGAGC
770 CTCCGGCGATGCTCCGGCTATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
* * *
18138924 CCAACATGTGCTACCGCAACCTTCGATCCGATTTGATCTTAGACTGGGAATGAACTCTGTAT
835 CCAGCATGTGCTGCCGTAACC--C--T-CG----G-TC-----C--GG--T----TC-G-AT
* * ***
18138986 GCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGATCGTATTGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * *
18139051 CCGGCCAGAGGGGAGGGATGCTCAAGCCGGGGATCGGTCGGGT-CCCCTCTGTGTGCTGCCAATC
65 CCGG-CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATC
* * ** * * * *
18139115 CTGCTGCTACAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 CTACTACCGCAACCC-TCGT-CTGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
18139180 ACCGACGAAATGAACGGGCGGGGGGACGGGCGGGCACTACGCCGGCCAGAGAGAAGGGATGCGTA
192 ACCGACAAAATGAGCGGGCGGCGGG-CGGG-AGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
** *
18139245 AGCAATGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTT
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
18139295 TTGCATGGCA
Statistics
Matches: 4797, Mismatches: 608, Indels: 333
0.84 0.11 0.06
Matches are distributed among these distances:
849 5 0.00
850 167 0.03
851 2 0.00
852 448 0.09
853 43 0.01
854 6 0.00
855 12 0.00
856 201 0.04
857 6 0.00
858 4 0.00
859 6 0.00
860 226 0.05
861 7 0.00
863 1 0.00
864 56 0.01
865 2 0.00
866 2 0.00
867 24 0.01
868 132 0.03
869 11 0.00
870 99 0.02
871 15 0.00
873 1 0.00
874 325 0.07
875 482 0.10
876 559 0.12
877 165 0.03
878 2 0.00
879 2 0.00
881 3 0.00
882 1 0.00
883 2 0.00
884 3 0.00
885 333 0.07
886 238 0.05
887 13 0.00
888 1 0.00
889 7 0.00
890 345 0.07
891 4 0.00
892 6 0.00
893 1 0.00
894 1 0.00
895 1 0.00
896 7 0.00
897 2 0.00
898 4 0.00
900 186 0.04
901 7 0.00
902 198 0.04
903 217 0.05
904 137 0.03
905 69 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (871 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCT
ACTACCGCAACCCTCGTCTGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACAAAATGAGCGGGCGGCGGGCGGGAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
ATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCCCCCCGATCGCCTGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
CTCCGGCTATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGTAACCCTCGGTCCGGTTCGAT
Found at i:18138997 original size:26 final size:26
Alignment explanation
Indices: 18138961--18139013 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18138951 CCGATTTGAT
* *
18138961 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18138987 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18139013 C
1 C
18139014 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18140918 original size:26 final size:26
Alignment explanation
Indices: 18140882--18140934 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18140872 CTGATCTGAT
18140882 CTTAGACTGGGAATGAAC-CCTGTATG
1 CTTAGACTGGGAATGAACTCC-GTATG
18140908 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18140934 C
1 C
18140935 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18141821 original size:26 final size:27
Alignment explanation
Indices: 18141775--18141827 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
18141765 TCCGATCGTA
*
18141775 ACTGGGAATGAACTTCATATG-CTAAG
1 ACTGGGAATGAACTCCATATGCCTAAG
*
18141801 ACTGGGAATGAACTCCGTATGCCTAAG
1 ACTGGGAATGAACTCCATATGCCTAAG
18141828 TCAACCCACG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (27 bp):
ACTGGGAATGAACTCCATATGCCTAAG
Found at i:18142675 original size:26 final size:26
Alignment explanation
Indices: 18142646--18142696 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18142636 TAGTCCGATC
*
18142646 TTAGACTAGGAATGAACTCCGTATGG
1 TTAGAATAGGAATGAACTCCGTATGG
*
18142672 TTAGAATGGGAATGAACTCCGTATG
1 TTAGAATAGGAATGAACTCCGTATG
18142697 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGAATAGGAATGAACTCCGTATGG
Found at i:18143578 original size:26 final size:26
Alignment explanation
Indices: 18143538--18143588 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
18143528 GGTTCGATCA
18143538 TAGACTAGGAATGAAC-TCTGTATGCT
1 TAGACTAGGAATGAACTTC-GTATGCT
* *
18143564 TAGACTGGGAGTGAACTTCGTATGC
1 TAGACTAGGAATGAACTTCGTATGC
18143589 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTAGGAATGAACTTCGTATGCT
Found at i:18144477 original size:26 final size:26
Alignment explanation
Indices: 18144427--18144479 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18144417 CTGGTGCGAT
* *
18144427 CTTAGACTGGGAATGAACTCGATATG
1 CTTAGACTGCGAATGAACTCAATATG
*
18144453 CTTAGACTGCGAATGAACTTAATATG
1 CTTAGACTGCGAATGAACTCAATATG
18144479 C
1 C
18144480 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCAATATG
Found at i:18145352 original size:26 final size:26
Alignment explanation
Indices: 18145323--18145374 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
18145313 CTGGTCCGAT
18145323 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18145349 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18145375 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:18146249 original size:26 final size:26
Alignment explanation
Indices: 18146213--18146271 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
18146203 CTCGGTCCAG
18146213 TCCG-ATG-TTAGACTAGGAATGAAC
1 TCCGTATGCTTAGACTAGGAATGAAC
*
18146237 TCCGTATGCTTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTAGGAATGAAC
18146263 TCCGTATGC
1 TCCGTATGC
18146272 CTAAGTCAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 25 0.78
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
TCCGTATGCTTAGACTAGGAATGAAC
Found at i:18146522 original size:897 final size:895
Alignment explanation
Indices: 18140178--18151067 Score: 13562
Period size: 891 Copynumber: 12.2 Consensus size: 895
18140168 CCTCAATCCA
* *
18140178 GTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGC
*
18140243 AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTT
66 AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
18140308 TAGGTACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
18140373 CCCTTAAGCCTTCACGTGATGTTTCATGGCAAGAAGACTCGTTTTCTACTTTTCACGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
** *
18140438 AAC-TTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAG
261 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
18140502 ATGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAGAA-TAAGCTAAAAAGTCGAAGTGTACAA
326 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAA
* *
18140566 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTATTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
18140631 CGGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGATGATGGATAGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
18140696 CAATATAAGGGCCAAGTACCAGCACCCATCTCACATCAAGTGCGCACACCCCCC-CAG-CCCCCC
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCC
* * *
18140759 TATCGTCGGAACCCCAATGCCG-CTGGTCAGG---T-------T-CTCTGACGATGGTGCCCC-A
585 GATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGA
* * * * * *
18140811 CAAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAATCCTCGGTCTGA
649 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* *
18140876 TCTGATCTTAGACTGGGAATGAAC-CCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
714 TCCGATCTTAGACTAGGAATGAACTCC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
18140940 TCAACCCACGAAACGAGCGTGCGAGCACTCAACCGGCCAGAGGGGCGGGATGCACAAGCTGGGGA
778 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-CGGGA
* * *
18141005 TCGGTTGGGTCCCC-CTATGCGTGCTG-CTGATCCTGCTACCACAACCCTCGATTC-G
842 TCGATCGGGTCCCCTCTA--CGTGCTGTC-GATCCTGCTACCACAACCCTC-AGTCTG
*
18141060 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACTAGCGGGCAGGC
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-T-----G-A-GC
* * * *
18141125 GGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGTTAGGGTGGTA
58 GGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
18141190 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
123 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
18141255 ACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCAGG
188 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** * *
18141320 ATTTTTGAAACTTTTTACGGTTCGATATTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCCCTAA
253 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* *
18141385 CTTGGAAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAGAACTCGAAG
318 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
18141450 TGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
383 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
18141515 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
448 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
** *
18141580 AGGGGGAGAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGG
513 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGG
* * * * * *
18141643 CCCCCCCGATTGTCGGAACCCCAATGTCGCCAGTCAGGTTCTTCGACGATGCTC---C---GGT-
578 CCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTG
*
18141701 -------GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGGTGCCGCAACCCTCG
643 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * * * *
18141759 GTCCGATCCGATCGTA-ACTGGGAATGAACTTCATATGCTAAGACTGGGAATGAACTCCGTATGC
708 GTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * ** * *
18141823 CTAAGTCAACCCACGAAAGGAGCATGCGGGCGCTCAGGAGGCAAGACGGGCGGGATGCGCAAGCC
773 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * ***
18141888 GGGGATCGATTGGGTCCCCCTCTACGTGCTG-CTGATCCTGGTACTGTAACCCTCAGTCTG
838 -GGGATCGATCGGGT-CCCCTCTACGTGCTGTC-GATCCTGCTACCACAACCCTCAGTCTG
* *
18141948 GTCCGAT-TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCAGGCGGGC
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--TG-A-GCGGGC
* *
18142012 GGGTGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTA
62 ----GGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * *
18142077 GGTGGGTTTAGGCACATCTTCACATTTTTACGTGCCAAAGCAATTTTTATGGCTTGTAAATTCAT
123 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
18142142 ACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATG
188 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * *
18142207 ATTTTTGAAACATTTTACGGTTCGGGATTTTTCAAAATTTTTTCGGAAGGAGTTTTGGCCACAAA
253 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * * * *
18142272 CTTGGTAGATGTGATCCTTGTATTTTTGTTGGTACGCACAAAAAAATTCACCTAAAAACTAGAAG
318 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
18142337 AGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGA
383 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
18142401 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGATTTGATGAGGGAT
448 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
** * *
18142466 AGGGGGCCAATATAAGGGCCAAGTACCTTCACCCATCACACATCATGTGCACACACCCCCC-CGG
513 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGG
*** * * * * **
18142530 CCCCTATGATCGTCGAAACCCCAATGTCGAT-GGTCAGGTTCTTCGGTGATGCTCTGGCGATGGT
578 CCCCCCCGATCGCCGGAACCCCAATGCCG-TCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGT
* * *
18142594 GCCCCGACGAAGAAAATTACGGCACCTGCACATGCCC-A----AGC-----CT------A-----
642 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* *
18142638 ------GTCCGATCTTAGACTAGGAATGAACTCCGTATGGTTAGAATGGGAATGAACTCCGTATG
707 GGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * *
18142697 CCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGTCGGCCAGAGGTGCGGGATGCGCAAGT
772 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-
* * * * * * * *
18142762 CGGGGATCAACCGGAT-CCGTCTCAGCGTGCTGTTGATCCTGCTACCATAACCCTCAGTC-C
836 CCGGGATCGATCGGGTCCCCTCT-A-CGTGCTGTCGATCCTGCTACCACAACCCTCAGTCTG
* * * *
18142822 GACCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCGACCGATG-AA--A-CGAGCGGG
1 GTCC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGG
* *
18142883 CAGGCACTACGCCGGCCAGAGAGACGGAATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
65 CAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
18142948 TTAGGCACATCTTCATATTTATGA-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
130 TTAGGCACATCTTCATATTTCT-ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
18143012 GTCCCTTAAGCCTTCATGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTT
* * * * * *
18143077 TGAAACTTTTTACGGTTTGAGATTTTTTAAAA-GTTTTCAGAAGGATTTTTGTCCCCAAACTTGG
258 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
18143141 TAGACATGATCCTTCTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
323 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
18143206 AAGATTTTGTGACCATTTGAAAAAAGTGTGCTCATTTCAGACACTTTAATGGCTACTGGCAGCAA
388 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* ** * *
18143271 ACCTGTAATATCTCAAATGCAATTTAATGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
453 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
18143336 GCCAATATAAGGTCCAAGCACCAGCACCCATCACACATCATGTGCGCACA-CCCCCTCGG-CCCC
518 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCC
* * * *
18143399 CCGATCGCCAGAACCCCAATGCCGTCGGTTAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
583 CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCG
* * * * *
18143464 ACGAAGAAATATACGGCACGAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATTCG
648 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* * * * *
18143529 GTTCGATCATAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAGTGAACTTCGTATGCCTAAG
713 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
** * * * *
18143594 TCAACCCACGAAATAAGCGTGCGGGCGCTCAGCCGGCCAAAGTGGCGAGATGTGCAAGCCGGGGA
778 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGA
* *
18143659 TCGATCGGGTCCTCCTCTACGTGCTG-CTGATCCTGCTACCGCAACCCT-ATTTCTG
842 TCGATCGGGTCC-CCTCTACGTGCTGTC-GATCCTGCTACCACAACCCTCA-GTCTG
* * *
18143714 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACG----GAACGAGCGGGC
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGC
* * **
18143775 AGGCACTACGTCGGCCAGAGACACGGGATGCGCAAGTTGTGGATCGATAGGGTGGTAGGTGGGTT
66 AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
18143840 TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGTTTGTGAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
18143905 CCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGAGGACTCGTTTTATATTTTTCACAATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* ** * *
18143970 AACTTTTCACGGTTCCAGATTTTTTAAAATTTTTTC-GAATGGATTTTTGGACCCAAACTTGGTA
261 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA-GGAGTTTTGGCCCCAAACTTGGTA
* **
18144034 GACATGATCCTTGTATTTTTGTTGGCATGCTTAAAAAAATTCAGCTAAAAAACTCGAAGTGTACA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACA
* * *
18144099 AGATTTTCTAACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
18144164 CCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * ** *
18144229 CCAATATAATGGCCAAGTACAAGCACCCATCGCACATCATGTTTGTACA-CCCCC-CGG-CCCCC
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCC
* * * * * * *
18144291 CGATCACCGGAACCCTAATGTCGCCGGTCAGGTTCTCCGACGACGCTCCGACGATGGTGCCCCGA
584 CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGA
* * ** *
18144356 CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTAGTCTGG
649 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * * ***
18144421 TGCGATCTTAGACTGGGAATGAACT-CGATATGCTTAGACTGCGAATGAACTTAATATGCCTAAG
714 TCCGATCTTAGACTAGGAATGAACTCCG-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
18144485 TCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCGGCATGCACAAGCCGGGCA
778 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG-A
* * * * ** * *
18144550 TCGGTCGGGTCCTCCTCTATGTGCTGTTGATCCTACTACTGCAACCCTCAATTTG
842 TCGATCGGGTCC-CCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTCTG
* * * * * *
18144605 GTCTGATCTTAGACTTGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAACAAGCGGTCGGGT
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC--GA-AA----T-GAGC
* * *
18144670 GGGTGGGCAAGCACTACGCCGGCCAGAGAGATGGGAT-----AGCCGTGGATCGATAGGGTGGTA
58 GGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
18144730 GGTGGGTTTAGGCACATCTACATATTTCTACGTGTCAAGGCCATTTTTATGGCTTGTAAATTCAT
123 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * * * * *
18144795 ACAATCGTCCCTTAAGCTTTCACGCGAAGTTTCACGGCAAGATGACT-TTTTTCTATTTTTCATG
188 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * * *
18144859 ATTTTTGAAACCTTTTGCAGTTTGGGATTTTTTAAAATTTTGTT-GGAATGAGTTTTGGCCCCAA
253 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT-TTCGGAAGGAGTTTTGGCCCCAA
* * * *
18144923 ACTTGGTAGATGTGATCCTTGTATTTTTTTTGTCATGCACAAAAAAATTCAGCTAAAAACTAGAA
317 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * * * *
18144988 GTGTACTAGATTTTGTGAGCATTTAAAAAAAGTGTCGCCATTTCAGACATTTTAATGGCTACTGG
382 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
18145053 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCATTTCTCGAGGTTTGACGAGGGA
447 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
18145118 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCT-G
512 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCG
* *
18145181 GCCCCCCCGATCGCCGGAACCCCAATGCCGTAGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGT
577 GCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGT
** * **
18145246 GTGCCGACGAA-AAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCCT-CCATAACCCT
642 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG-CTGCCGCAACCCT
* * *
18145309 CGATCTGGTCCGAT-TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
706 CGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * *
18145373 GCCTAAGTTAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAG
771 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * *
18145438 CCGGGATTCGA-CTGGGTCTCACTCTACGTGCTGTTC-ATACTGCTACCGCAACCCTCAGTCTG
836 CCGGGA-TCGATC-GGGTC-CCCTCTACGTGCTG-TCGATCCTGCTACCACAACCCTCAGTCTG
* * * *
18145500 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGTGTGGGCGGGT
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGC
* *
18145565 AGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
66 AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
18145630 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA-CGT
131 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* **
18145694 CCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* *
18145759 AACTTTTTATGGTTCGGGATTTTTTAAATTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
261 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
18145824 ACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAAATCGAAGTGTGCAAA
326 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
18145889 ATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * * ** *
18145954 TGTAAAATCTCAAATGCTCTTTATGGGGGTATGAGTTCTTGAGGTTTAATGAGAAATA-GAGGCC
456 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
18146018 AATATAAGGGCCAAGTACCAGCACCCATCGCACAACATGTGCGCACACCCCCCCGTCGGCCCCCC
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-TCGGCCCCCC
* * * * *
18146083 CGATCACCGGAACCCTAATGCCGTAGGTCAGGTTCTCCGACGATGCTCTGGCAATAGTGCCCCGA
584 CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGA
* * * * * *
18146148 CGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATTTGCTGTCGTAACCCTCGGTCCAG
649 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
*
18146213 TCCGATGTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
714 TCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* *
18146278 CAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGATT
779 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGA-T
* * **
18146343 CGATTGGGTCCCACTCTACGTGCTGTCGATACTGCTACCGTAACCCTCAGTCTG
843 CGATCGGGTCCC-CTCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTCTG
* *
18146397 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTGGGCGGGT
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGC
* * * *
18146462 AGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAACTGTGGATCGATAGGGTGGTAGGTGGGTT
66 AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
18146527 TAGG-ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGT
131 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * **
18146591 CCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
*
18146656 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCCAAACTTGGTAG
261 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
18146721 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAA
326 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
18146786 ATTTTGTGGCAATTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAAC
391 ATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* **
18146851 CTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAAATA-GGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
18146915 CAACATAAGGGCCAAGTACCAGCACCCATCGGACATCATGTGCGCACA-CCCCC-CGG-CCCCCC
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCC
** * * *
18146977 GATCGCCGGAACCCTGATGCCGTCGGTCAGGTTCTCCGATGATGCTCTGGCAATAGTGCCCCGAC
585 GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGAC
* * *
18147042 GAAG-AAAATGTGGCACCAGCACATGCCCGAACCCAGCATTTGCTGCCGCAACCCTCGGTCCGGT
650 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
18147106 CCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
715 CCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
** * * *
18147171 AACCCATTAAACGA--GT----GTG--CA-TC--CC--A-----GGGAT-CG---GTC-GG---G
780 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGATCG
* * * * * * * * **
18147210 -TC----CCCCTCTGCGTCCTGCCAATCCTAC-AGCCGCAACCATCAATCCA
845 ATCGGGTCCCCTCTACGTGCTGTCGATCCTGCTA-CCACAACCCTCAGTCTG
* * * * * *
18147256 ATCCAATCTTAGACTGGGAATGAACTCCGTATTCCTAAACCAATCGACGAAACGAGTTGGCGGGC
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA----GCGGGC
** * *
18147321 GGGTGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTG
62 GGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
18147386 GGTTTAGGCACATCTTGATACTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
127 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
18147451 TGGTCCCTTAAGCGTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTT
192 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* *** * **
18147516 TTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCATAAAAATCA
257 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
** * * * * *
18147581 GTAGAAATCATCCTTGTGTTCTTGTTGGCATGCACAAAAAAATTTAGCTAAAAAATCGAAGTGTA
322 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * * *
18147646 CAAGATGTGGTGACCATTTGAAAAAAATGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCA
387 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
18147711 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGAG
452 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * * * * *
18147776 GTCCTATGTAAGGGCCAAGTAGCAGCACCCATCACACATCATGTGCGAACACCCCCCACCCGGCC
517 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CTCGGCC
* * * * * * *
18147841 CCCTCGATCGTCGAAACCCCAATACCGTCGGTC-GATTCTCTGACGATGCT-TCGACGATGGTGC
580 CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCT-GGCGATGGTGC
* * * **
18147904 CCCGACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCCA
644 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * *
18147969 TCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCC
709 TCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
** * * ** * * *
18148034 TAAGTCAACCCATAAAACGAGCGTACGGGGGCTCAGCCAACCAGAAGGGTGGGATACGCAAGCCG
774 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* ** *
18148099 AAGATCGATCGGGTGCCCCTCTGTGTGCTGTCGATCCTGCTACCACAACCCTCGGTCTG
839 -GGATCGATCGGGT-CCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTCTG
* ** *
18148158 GTCTGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGC
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGC--G--GGC
* * * * *
18148223 GGGCGGGTGGGCACTACGCCGGCCAAATAGACGGGATGCGCAAGCCGTGAATCGATAGAGTGGTA
62 GGGC----AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
18148288 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTCTAAATTCAT
123 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * **
18148353 ACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTATCATA
188 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * *
18148418 ATTTTTGAAACTTTTTGA-AGTTCGGGATTTTTTAAAATTTTTTTGGAAGTAGTTTTGGCCCCAA
253 ATTTTTGAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * * *
18148482 ACTTAGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCTAA
317 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
18148547 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACAATTTAATTGCTACTGG
382 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
18148612 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCCCGAGGTTTGATGAGGGA
447 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
18148677 TAGGGGGCCAATATAAGAGCCAAGTACCAGCACCTATCGTACATCATGTGCGCACACCCCCCTCG
512 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCG
* * * * **
18148742 GCCCCCACGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGA-GATGCTCCAGCGATGG
577 GCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC-CGACGATGCTCTGGCGATGG
* * * * * *
18148806 TGCCCC-AGCGAAGAAAAATGCAGCACCAGCGCATGCCCAAGCCCAGTATTTGCTACCGCAACCC
641 TGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * * * * *
18148870 TTGGTCCGATCCGATCTTAGACT-GGAAATAAACTCCATATGCTTAGACTAGGAATGAACTCCGC
705 TCGGTCCGGTCCGATCTTAGACTAGG-AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * * *
18148934 ATACCCAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAACCAGCCAGAGGGGCGGGATGCGCA
769 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * * * *
18148999 ACCCGAGGATCGA-CTGGGTCCCCCTCTATGTGTTGCCGATCCT-ATGCCACAACCCTCGGTCTG
834 AGCCG-GGATCGATC-GGGT-CCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTCTG
* *
18149062 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAACGGGTGGGC
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGC
* * * *
18149127 AGGCACTACGCCGGCCAGAGAGACGGCATGCGCGAGCCATGGATTGATAGGGTGGTAGGTGGGTT
66 AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
18149192 TAGGCACATCTTCATATTTCT-CAATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TAGGCACATCTTCATATTTCTAC-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
18149256 TCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * ** * * * * *
18149321 AAACTTTTTGCTGTTCAAGATGTTTTAAAATTTTTTCAGAAGGGGTTTTCGCCCTAAACTTGGTA
260 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * * *
18149386 GACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTCAAAACTCAAATTGTAAAA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
18149451 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
18149516 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
18149581 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCACACT
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCC
* * * * *
18149646 GATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGATGGTGCTCCGGCGATGGTGCTCTAGT
585 GATCGCCGGAACCCCAATG---CC-GTC-GG---T-C-A-GGTTCTCCGACGA---TGCTCTGGC
* * *
18149711 GATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCGTGTGCTGCCGCA
636 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * * * * * **
18149776 ACCATCAGTTCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGTTAATGAACTC
701 ACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * ** ** *
18149841 CGTATGCCTAAGTCAACCCATGAAATGAGCGTGTAGGCGCTCAATCGGCCAGAGGGGCGGCATGC
766 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * ** ** * *
18149906 ACAAGCCGGAGATCGGTTGGGTCCCCCTTTGTGTGCTACCGATCCTACTACCATAACCCTC-GAT
831 GCAAGCCGG-GATCGATCGGGT-CCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCAG-T
18149970 CTG
893 CTG
** *
18149973 GTCATATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAAGCGGGC
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--TG--AGCGGGC
* * *
18150038 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCATGCCGTGGATCGATAGGGTGGTAGGTG
62 GGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
18150103 GGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
127 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * *
18150168 CGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCATGATTT
192 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * **
18150233 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGGGTTTTCACCCCAAACTTG
257 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
*
18150298 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTCAAAACTCGAAGTGTA
322 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
18150363 CAAGATTTTATGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
387 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
18150428 AACCTGTAAAATCTCAAATCCTCTTCAA-GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
452 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
18150492 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCTCCC-C-GACCC
517 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCC
** ** ** ** * * *
18150555 CCCGATTACTAGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGGGGATGGTGCCCT
582 CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCC
* * * *
18150620 GATGAAAAAAAATGCGGCCCCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAA-CC-C--T-C
647 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
*
18150680 -G---G----T---CT--G---G---TCC-AAT-CTTAGACTGGGAATGAACTCCGTATGCCTAA
712 GGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
18150724 GTCAACCCACGAAATGAGCGTGCAGGCGCTTAGTCGGCCAGAGGGGTGGGATGCGCAAGCCGAGG
777 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG-GG
* * * ** ** *
18150789 ATTGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCTGCAACCCTTGGTCCG
841 ATCGATCGGGT-CCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTCTG
* * * * ** **
18150845 GTCCAATATTAGACTGGCAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTAGGTAGGC
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGC
* * * *
18150910 GGGCACTACGCCGGCCAGAGAGACGAGATGCGTAAGCCGTGGATCGATAGGGTGGTAAGTGGGTT
66 AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
18150975 TAGGCACATCTTCATATTTCTACGTGCCAATCCCATTTTTATGGCTTGTAAATTCAGACAATGGT
131 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
18151040 CCCTTATGCCTTCACGTGAAGTTTCATG
196 CCCTTAAGCCTTCACGTGAAGTTTCATG
18151068 TACAAGATTT
Statistics
Matches: 8774, Mismatches: 996, Indels: 490
0.86 0.10 0.05
Matches are distributed among these distances:
858 1 0.00
859 77 0.01
860 3 0.00
863 178 0.02
864 649 0.07
865 184 0.02
866 4 0.00
867 2 0.00
868 193 0.02
869 161 0.02
870 4 0.00
871 2 0.00
872 173 0.02
873 11 0.00
874 22 0.00
875 143 0.02
876 39 0.00
877 3 0.00
878 1 0.00
879 1 0.00
880 4 0.00
881 2 0.00
882 53 0.01
883 11 0.00
884 2 0.00
885 2 0.00
886 150 0.02
887 450 0.05
888 147 0.02
889 73 0.01
890 252 0.03
891 1154 0.13
892 654 0.07
893 86 0.01
894 8 0.00
895 264 0.03
896 852 0.10
897 669 0.08
898 346 0.04
899 3 0.00
900 10 0.00
901 40 0.00
902 89 0.01
903 34 0.00
904 111 0.01
905 218 0.02
906 454 0.05
907 11 0.00
908 1 0.00
909 3 0.00
910 202 0.02
911 68 0.01
912 18 0.00
913 2 0.00
914 89 0.01
915 391 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGC
AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCG
ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGACG
AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
CGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGATCGA
TCGGGTCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTCTG
Found at i:18147140 original size:26 final size:26
Alignment explanation
Indices: 18147111--18147163 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18147101 CCGGTCCGAT
18147111 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18147137 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18147163 C
1 C
18147164 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18148009 original size:26 final size:26
Alignment explanation
Indices: 18147980--18148032 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18147970 CTGGTCCGAT
*
18147980 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18148006 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18148032 C
1 C
18148033 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18149413 original size:896 final size:897
Alignment explanation
Indices: 18147261--18151067 Score: 4840
Period size: 896 Copynumber: 4.2 Consensus size: 897
18147251 ATCCAATCCA
* * * * *
18147261 ATCTTAGACTGGGAATGAACTCCGTATTCCTAAACCAATCGACGAAACGAGTTGGCGGGCGGGTG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----ACGGGCGGGCG
* *
18147326 GGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTT
62 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
18147391 AGGCACATCTTGATACTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
127 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
18147456 CCTTAAGCGTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAA
192 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * *** * *
18147521 ACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCATAAAAATCAGTAGA
257 ACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTCGCCCCAAACTTAGTAGA
* * * * * * *
18147586 AATCATCCTTGTGTTCTTGTTGGCATGCACAAAAAAATTTAGCTAAAAAATCGAAGTGTACAAGA
322 AGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTCAAAACTCGAAGTGTACAAGA
* * * *
18147651 TGTGGTGACCATTTGAAAAAAATGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
387 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * *
18147716 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGAGGTCCT
452 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * * * *
18147781 ATGTAAGGGCCAAGTAGCAGCACCCATCACACATCATGTGCGAACACCCCCCACCCGGCCCCCTC
517 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CTCGGCCCCCAC
* * ** * *
18147846 GATCGTCGAAACCCCAATACCGTCGGTC-GATTCTCT-GACGATGCTTC-GACGATGGTGCCCCG
580 GATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCTGGACGATGCTCCAG-CGATGGTGCCCCG
* * * *
18147908 ACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCCATCTG
644 ACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCT-CGTCCG
* * *
18147973 GTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAG
708 GTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * * * * * *
18148038 TCAACCCATAAAACGAGCGTACGGGGGCTCAGCCAACCAGAAGGGTGGGATACGCAAGCCGAAGA
773 TCAACCCACAAAATGAGCGTGCAGGCGCTCAACCAGCCAGAGGGGCGGGATGCGCAAGCCGAGGA
* * * * *
18148103 TCGATCGGGTGCCCCTCTGTGTGCTGTCGATCCTGCTACCACAACCCTCGGTCTGGTCTG
838 TCGATCGGGTCCCCCTCTATGTGCTGCCGATCCTGATACCACAACCCTCGGTCTGGTCCG
**
18148163 ATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA------A--CGGGCG
* * * * *
18148228 GGTGGGCACTACGCCGGCCAAATAGACGGGATGCGCAAGCCGTGAATCGATAGAGTGGTAGGTGG
58 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
18148293 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAAT
123 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * **
18148358 GGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTATCATAATTTT
188 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * ** * *
18148423 TGAAACTTTTTGA-AGTTCGGGATTTTTTAAAATTTTTTTGGAAGTAGTTTTGGCCCCAAACTTA
253 TGAAACTTTTT-ACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTCGCCCCAAACTTA
*
18148487 GTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC-CAAAAACTCTAAGTGT
317 GTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTC-AAAACTCGAAGTGT
* * *
18148551 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACAATTTAATTGCTACTGGCAGC
381 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
18148616 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCCCGAGGTTTGATGAGGGATAGG
446 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * *
18148681 GGGCCAATATAAGAGCCAAGTACCAGCACCTATCGTACATCATGTGCGCACACCCCCCTCGGCCC
511 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCC
*
18148746 CCACGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGA-GATGCTCCAGCGATGGTGCC
576 CCACGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCTGGACGATGCTCCAGCGATGGTGCC
* * * * * *
18148810 CC-AGCGAAGAAAAATGCAGCACCAGCGCATGCCCAAGCCCAGTATTTGCTACCGCAACCCTTGG
641 CCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCC-TCG
* * * * * *
18148874 TCCGATCCGATCTTAGACTGGAAATAAACTCCATATGCTTAGACTAGGAATGAACTCCGCATACC
704 TCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCC
* * *
18148939 CAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAACCAGCCAGAGGGGCGGGATGCGCAACCCG
769 TAAGTCAACCCACAAAATGAGCGTGCAGGCGCTCAACCAGCCAGAGGGGCGGGATGCGCAAGCCG
* *
18149004 AGGATCGA-CTGGGTCCCCCTCTATGTGTTGCCGATCCT-ATGCCACAACCCTCGGTCTGGTCCG
834 AGGATCGATC-GGGTCCCCCTCTATGTGCTGCCGATCCTGATACCACAACCCTCGGTCTGGTCCG
* * *
18149067 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAACGGGTGGGCAGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCA
* * * *
18149132 CTACGCCGGCCAGAGAGACGGCATGCGCGAGCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
18149197 ACATCTTCATATTTCT-CAATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
131 ACATCTTCATATTTCTAC-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
18149261 TAAGCCTTCACGTGAAGTGTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
195 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * * * * * *
18149326 TTTTGCTGTTCAAGATGTTTTAAAATTTTTTCAGAAGGGGTTTTCGCCCTAAACTTGGTAGACGT
260 TTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTCGCCCCAAACTTAGTAGAAGT
* * * * *
18149391 GATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTCAAAACTCAAATTGTAAAAGATTT
325 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTCAAAACTCGAAGTGTACAAGATTT
18149456 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
390 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
18149521 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
455 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
*
18149586 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGG-CCACACTGATC
520 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCAC-GATC
* * *
18149650 GTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGATGGTGCTCCGGCGATGGTGCTCTAGTGATG
584 GTCGGAACCCCAATGCCACCGGTCAGGTTCT-C-----TG----GACGA---TGCTCCAGCGATG
* * * * *
18149715 GTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCGTGTGCTGCCGCAACCA
636 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCC
* * * * **
18149780 TCAGTTCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGTTAATGAACTCCGTA
701 TC-GTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTA
** * * * * *
18149845 TGCCTAAGTCAACCCATGAAATGAGCGTGTAGGCGCTCAATCGGCCAGAGGGGCGGCATGCACAA
765 TGCCTAAGTCAACCCACAAAATGAGCGTGCAGGCGCTCAACCAGCCAGAGGGGCGGGATGCGCAA
* * * * * * *
18149910 GCCG-GAGATCGGTTGGGTCCCCCTTTGTGTGCTACCGATCCT-ACTACCATAACCCTCGATCTG
830 GCCGAG-GATCGATCGGGTCCCCCTCTATGTGCTGCCGATCCTGA-TACCACAACCCTCGGTCTG
**
18149973 GTCAT
893 GTCCG
18149978 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAAGCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-AA-CGGGCGGGCG
* *
18150043 GGCACTACGTCGGCCAGAGAGACGGGATGCGCATGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
62 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
18150108 AGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTC
127 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
18150173 CCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCATGATTTTTGAA
192 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *
18150238 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGGGTTTTCACCCCAAACTTGGTAGA
257 ACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTCGCCCCAAACTTAGTAGA
*
18150303 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTCAAAACTCGAAGTGTACAAGA
322 AGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTCAAAACTCGAAGTGTACAAGA
* *
18150368 TTTTATGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
387 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
18150433 GTAAAATCTCAAATCCTCTTCAA-GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
452 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
18150497 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCTCCC-CGACCCCC-CGA
517 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCACGA
* * * * * *
18150560 T--TACTAGAACCCCAATGCCACCGGTCAGGTTCTCCGG-TGATGCTCCGGGGATGGTGCCCTGA
582 TCGT-C-GGAACCCCAATGCCACCGGTCAGGTTCTCTGGACGATGCTCCAGCGATGGTGCCCCGA
* * * * *
18150622 TGAAAAAAAATGCGGCCCCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAA-CC-C-T-C-G-
645 CGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGTCCGGT
18150681 --G----T---CT--G---G---TCCA-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
710 CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * ** * * *
18150727 AACCCACGAAATGAGCGTGCAGGCGCTTAGTCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATT
775 AACCCACAAAATGAGCGTGCAGGCGCTCAACCAGCCAGAGGGGCGGGATGCGCAAGCCGAGGATC
* * * ** * * *
18150792 GATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCTGCAACCCTTGGTCCGGTCCA
840 GATCGGGTCCCCCTCTATGTGCTGCCGATCCTGATACCACAACCCTCGGTCTGGTCCG
* * *** **
18150850 ATATTAGACTGGCAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTAGGTAGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCA
* * *
18150915 CTACGCCGGCCAGAGAGACGAGATGCGTAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
18150980 ACATCTTCATATTTCTACGTGCCAATCCCATTTTTATGGCTTGTAAATTCAGACAATGGTCCCTT
131 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
18151045 ATGCCTTCACGTGAAGTTTCATG
196 AAGCCTTCACGTGAAGTTTCATG
18151068 TACAAGATTT
Statistics
Matches: 2558, Mismatches: 302, Indels: 124
0.86 0.10 0.04
Matches are distributed among these distances:
868 152 0.06
869 1 0.00
870 1 0.00
872 174 0.07
873 3 0.00
874 2 0.00
877 1 0.00
880 1 0.00
882 2 0.00
885 1 0.00
889 1 0.00
892 1 0.00
893 1 0.00
894 1 0.00
895 6 0.00
896 505 0.20
897 3 0.00
898 65 0.03
901 2 0.00
902 48 0.02
904 107 0.04
905 220 0.09
906 464 0.18
907 3 0.00
909 2 0.00
910 204 0.08
911 69 0.03
912 30 0.01
913 4 0.00
914 94 0.04
915 390 0.15
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCA
CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
TTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTCGCCCCAAACTTAGTAGAAGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTCAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCACGATCGT
CGGAACCCCAATGCCACCGGTCAGGTTCTCTGGACGATGCTCCAGCGATGGTGCCCCGACGAAGA
AAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGTCCGGTCCGATC
TTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CAAAATGAGCGTGCAGGCGCTCAACCAGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGG
GTCCCCCTCTATGTGCTGCCGATCCTGATACCACAACCCTCGGTCTGGTCCG
Found at i:18149824 original size:26 final size:26
Alignment explanation
Indices: 18149795--18149847 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18149785 TCGGTCTGAT
*
18149795 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
18149821 CTTAGACTGTTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18149847 C
1 C
18149848 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18152803 original size:901 final size:887
Alignment explanation
Indices: 18151066--18153253 Score: 2739
Period size: 901 Copynumber: 2.5 Consensus size: 887
18151056 TGAAGTTTCA
* * * * *
18151066 TGTACAAGATTTTGTGACCATATAAAAAAAGTGTCCCCATTTCTGACACTTTAATAGCTACTGGC
1 TGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
**
18151131 AATAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG-TGAGGGAT
66 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
18151195 AGGGCCGGCCCAATATAAGGGCCAAGTACCCAGCCACCCCATCGCACATCATGTGCGCACACCCC
131 AGGG--GG-CCAATATAAGGGCCAAGTA-CCAG-CA-CCCATCGCACATCATGTGCGCACA-CCC
* * * * ** * *
18151260 TCCCAGCTCCTCTGATCG-GCAA-CCCAATGTTGTC-GTCCGGTTCTCCCGA---C-G-ATGGTG
189 -CCCGGCCCCCCTGATCGCGGAACCCCAATGCCGCCGGTCAGGTTCTCCCGATCTCGGCATGGTG
* * * *
18151317 GCCTAACGAAGAAAAATACGGCACCGAGCCCATGCCCGAGCCC--CATGTGCTGCGC-AGCCTCG
253 CCCCAACGAAGAAAAATACGGCACC-AGCACATGCCCGAGCCCAGCATGTGCTGCGCAACCCTCG
* * * ** *
18151379 GTCTGATTTGATCTTAGACTGGAATGAACTCTGTAATGCTTAGACTGGGAAT-AACTC-TATGTC
317 GTC-CATCTGATCTTAGACTGGAATAAACTCCAT-ATGCTTAGACTGGGAATGAACTCGTATGCC
* ** * *
18151442 TAAGT-AA-CCATGAACGATTGTGCGGGCACTCAGCCGGCCAGAGAGGCGAGATGCGCAAGCCGA
380 TAAGTCAACCCACGAACGAGCGTGCAGGCACTCAGCCGACCAGAGAGGCGAGATGCGCAAGCCGA
* * *
18151505 GGATCAGATCGGGTCCCCCTCTACGTGCTATCGATCCTACTACCGTAACCCTCGATCCGATCTGA
445 GGATCAGACCGGGTCCCCCTCTACGTGCTATCGATCCTACTACCGCAACCCTCGATCCGATCCGA
18151570 TCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
510 TC-AA--TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
*
18151635 GGCACTACGCCGACCAGAGAGACGGGATTCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
572 GGCACTACGCCGACCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
18151700 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
637 AGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
18151765 CCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCATTTTCTATTTTTGACGATTTTCCAA
702 CCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCATTTTCTATTTTTCACAATTTTCCAA
* *
18151830 ACTTTTTACGGTTCGGGATTTTTGAAAATTTTTTCGACAGGAGTTTTGGCCCCAAACTTGGTAGA
767 ACTTTTTACGGTTCGGGATTTTTGAAAATTTTTTCGAAAAGAGTTTTGGCCCCAAACTTGGTAGA
18151895 CGTGATCCTTGTATTTTTCTTGGCATGCACAAAGAAAT-TCAGCTAAAAACTCGAAG
832 CGTGATCCTTGTATTTTTCTTGGCATGCACAAA-AAATATCAGCTAAAAACTCGAAG
*
18151951 TGTACAGGATTTTGTCACC-TTTGGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
1 TGTACAAGATTTTGTCACCATTT-GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
18152015 CAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
65 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * *
18152080 TAGGGAGCCAATATAAGGGCCAAATACCAGCACCCATCACACATCATGTGCGAACACCCCCCGGC
130 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
18152145 CCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCAATGGTGC
195 CCCCCTGATCG-CGGAACCCCAATGCCGCCGGTCAGGTTCTCC--CGAT-CT-CGGC-ATGGTGC
* * ** *
18152210 CCCAGCAAAGAAAAATTTGGCACCAGCACATGCCCGACCCCAGCATGTGCTGTCGCAACCCTCGG
254 CCCAACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CGCAACCCTCGG
*
18152275 TCCATCCGATCTTAGACTGGGAATAAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCT
318 TCCATCTGATCTTAGACT-GGAATAAACTCCATATGCTTAGACTGGGAATGAACTC-GTATGCCT
* * ** ** * *
18152340 ATGTCAACCCACGAAACGAGCGTGTAGGTGCTCAGTTGACCAGA-AGGGCGGGATGCGCAAGTCG
381 AAGTCAACCCACG-AACGAGCGTGCAGGCACTCAGCCGACCAGAGA-GGCGAGATGCGCAAGCCG
* ** * * * *** * *
18152404 GGGATC-GACCGGGTCCCCCTCTGTGTGCT-GCTGATCTTGCTGTTGCAACCCTCGATCTGGTCC
444 AGGATCAGACCGGGTCCCCCTCTACGTGCTATC-GATCCTACTACCGCAACCCTCGATCCGATCC
* *
18152467 GATC-A-TAGACTGGGAATGAA-TTCGTATGCCTAAGCCAACCGACGAAACGAGCTGGTGGGCGG
508 GATCAATTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----GGGCGG
*
18152529 ACGAACGGGCACTACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGG
569 --G--CGGGCACTACGCCGACCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
18152594 TGTGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCAATTTTTATGGCTTGTAAATTCATAC
630 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATAC
* * *
18152659 AATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAAT
695 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCATTTTCTATTTTTCACAAT
** *** * * * * *
18152724 TTTTGAAACTTTTTGTTGTTTGGGATTTTTTAAATTTTTTTTGAAAAGATTTTTGGCCCCAAACT
760 TTTCCAAACTTTTTACGGTTCGGGATTTTTGAAAATTTTTTCGAAAAGAGTTTTGGCCCCAAACT
* * *
18152789 TGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATATCAGCTAAAAATTCGAAG
825 TGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAATATCAGCTAAAAACTCGAAG
* *
18152852 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGC
1 TGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
**
18152917 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCATGAGTTCTCGAGGTTTGATGAGGGAT
66 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * *
18152982 AGGGGGCCAATATAAGGGCCAAGTACCAGCGCCCATCGTACAT-ATGTGTGCACACCCCCTGGCC
131 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * * *
18153046 CCCCCGATAGCCGGAACCCCAATACCGCCGGTTAGG-T-T--C--TCT-GGCGATGGTGCCCCAA
196 CCCCTGATCG-CGGAACCCCAATGCCGCCGGTCAGGTTCTCCCGATCTCGGC-ATGGTGCCCCAA
* * * * * * ** *
18153104 CGAAGAAAAATGCAGCTCCAGCACATGCCCAAGCCCAGCTTGTGCTGCGACATCCCTCAATCCGG
259 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCG-CAACCCTCGGTCC-A
* *
18153169 TCTGATCTTAGACTGGAAAAAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
322 TCTGATCTTAGACTGGAATAAACTCCATATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTC
18153234 AACCCACGGAACGAGCGTGC
386 AACCCAC-GAACGAGCGTGC
18153254 CCCGACGAAG
Statistics
Matches: 1129, Mismatches: 131, Indels: 82
0.84 0.10 0.06
Matches are distributed among these distances:
878 14 0.01
879 3 0.00
880 25 0.02
881 11 0.01
882 15 0.01
883 18 0.02
884 6 0.01
885 108 0.10
886 12 0.01
888 2 0.00
889 127 0.11
890 16 0.01
891 17 0.02
892 26 0.02
893 40 0.04
894 48 0.04
895 25 0.02
897 16 0.01
898 4 0.00
899 53 0.05
900 95 0.08
901 445 0.39
902 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
TGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
CCCCTGATCGCGGAACCCCAATGCCGCCGGTCAGGTTCTCCCGATCTCGGCATGGTGCCCCAACG
AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCGCAACCCTCGGTCCATCTG
ATCTTAGACTGGAATAAACTCCATATGCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACCC
ACGAACGAGCGTGCAGGCACTCAGCCGACCAGAGAGGCGAGATGCGCAAGCCGAGGATCAGACCG
GGTCCCCCTCTACGTGCTATCGATCCTACTACCGCAACCCTCGATCCGATCCGATCAATTAGACT
AGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGAC
CAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
GTGAAGTTTCATGGCAACACGACTCATTTTCTATTTTTCACAATTTTCCAAACTTTTTACGGTTC
GGGATTTTTGAAAATTTTTTCGAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
TTTTCTTGGCATGCACAAAAAATATCAGCTAAAAACTCGAAG
Found at i:18153218 original size:26 final size:25
Alignment explanation
Indices: 18153175--18153226 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
18153165 CCGGTCTGAT
18153175 CTTAGACTGGAAAAAACTCCATATG
1 CTTAGACTGGAAAAAACTCCATATG
** *
18153200 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACT-GGAAAAAACTCCATATG
18153226 C
1 C
18153227 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (25 bp):
CTTAGACTGGAAAAAACTCCATATG
Found at i:18153377 original size:155 final size:155
Alignment explanation
Indices: 18153095--18153405 Score: 437
Period size: 155 Copynumber: 2.0 Consensus size: 155
18153085 TCTGGCGATG
* ** *
18153095 GTGCCCCAACGAAGAAAAATGCAGCTCCAGCACATGCCCAAGCCCAGCTTGTGCTGCGACATCCC
1 GTGCCCCAACGAAGAAAAATGCAGCACCAGCACATGCCCAAGCCCAGAATGTGCTGCGACAACCC
*
18153160 TCAATCCGGTCTGATCTTAGACTGGAAAAAACTCCATATGCTTAGACTAGGAATGAACTCCGTAT
66 TCAATCCGGTCCGATCTTAGACTGGAAAAAACTCCATATGCTTAGACTAGGAATGAACTCCGTAT
*
18153225 GCCTAAGTCAACCCACGGAACGAGC
131 GCCTAAGTCAACCCACGAAACGAGC
* * * *
18153250 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACTTGCCCGAGCCCAGAATGTGCTGTC-ACAACC
1 GTGCCCCAACGAAGAAAAATGCAGCACCAGCACATGCCCAAGCCCAGAATGTGCTG-CGACAACC
** * * **
18153314 CTCGGTCTGGTCCGATCTTAGATTGGAAATAAACTCTGTATGCTTAGACT-GGAATGAACTCCGT
65 CTCAATCCGGTCCGATCTTAGACTGGAAA-AAACTCCATATGCTTAGACTAGGAATGAACTCCGT
*
18153378 ATGCCTAAGTCAACCCATGAAACGAGC
129 ATGCCTAAGTCAACCCACGAAACGAGC
18153405 G
1 G
18153406 CGCGGGCGCT
Statistics
Matches: 137, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
155 118 0.86
156 19 0.14
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (155 bp):
GTGCCCCAACGAAGAAAAATGCAGCACCAGCACATGCCCAAGCCCAGAATGTGCTGCGACAACCC
TCAATCCGGTCCGATCTTAGACTGGAAAAAACTCCATATGCTTAGACTAGGAATGAACTCCGTAT
GCCTAAGTCAACCCACGAAACGAGC
Found at i:18153379 original size:25 final size:26
Alignment explanation
Indices: 18153330--18153381 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
18153320 CTGGTCCGAT
* *
18153330 CTTAGATTGGAAATAAACTCTGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
*
18153356 CTTAGACTGG-AATGAACTCCGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
18153381 C
1 C
18153382 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGAAATAAACTCCGTATG
Found at i:18154248 original size:26 final size:26
Alignment explanation
Indices: 18154219--18154271 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18154209 CCGGTCCGAT
*
18154219 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
*
18154245 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
18154271 C
1 C
18154272 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCGTATG
Found at i:18155003 original size:26 final size:26
Alignment explanation
Indices: 18154967--18155019 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18154957 CCAGTCCGAT
* *
18154967 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18154993 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18155019 C
1 C
18155020 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18156893 original size:26 final size:26
Alignment explanation
Indices: 18156857--18156906 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18156847 ATCCGATGTT
18156857 AGACTAGGAATGAACTCCATATGCTC
1 AGACTAGGAATGAACTCCATATGCTC
* *
18156883 AGACTGGGAATGAACTCCGTATGC
1 AGACTAGGAATGAACTCCATATGC
18156907 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (26 bp):
AGACTAGGAATGAACTCCATATGCTC
Found at i:18158293 original size:899 final size:898
Alignment explanation
Indices: 18156446--18162245 Score: 7272
Period size: 899 Copynumber: 6.5 Consensus size: 898
18156436 ATTGAAAAAT
* *
18156446 CCCAAACTTGGCAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAAATCAGCTAAAAAC
1 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAAC
* * *
18156511 TCGAAGTATACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATAGCT
66 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* ** *
18156576 ACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAAGGGTGTGAGTTCTCGAGGTTTGATG
131 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
*
18156641 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGCACATCATGTGCGCACACTCC
196 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---C
* * * *
18156706 CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGATGATTCTTCGACG
258 CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACG
* * ** * *
18156771 ATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCAAGCCCAGCATGTGCTGCCGTAA
323 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAA
* * * * *
18156836 CCCTCGATCTGATCCGATGTTAGACT-AGGAATGAACTCCATATGCTCAGACTGGGAATGAACTC
388 CCCTCGGTCTGGTCCGATCTTAGACTGA-GAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
*
18156900 CGTATGCCTAAGTCAACCCACGAAACGAACGTACGGGCGCTCAGCCGGCCAG-AGGGACGGGATG
452 CGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAAGGG-CGGGATG
* * * * ** * * * * *
18156964 CGCAAGTC-GAGGATTGGCCGGGTCCCCTTCTGGGTTCTG-CTAATCCTACTACCGTAAACCTCG
516 CGCAAGCCAG-GGATCGACCGGGTCCCCCTCTACGTGCTGTC-GATCCTGCTACCGCAACCCTCG
* * * * * * *
18157027 GTCTAGTCTGATCTTAGACTGGGAATGAACTTCGAATGCCTAAGCCAACCGACGAAACGAACGGG
579 ATCGAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATG-A-GCG
* * *
18157092 CGGCGGGCGGGCGGGCACTACGCCGACTAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGT
642 CGGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
*
18157157 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATTGCTTGTAAAT
706 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAAT
* * *
18157222 TCATGCAATGGTCTCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTT
771 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * *
18157287 CACTATTTTTGAAAC-TTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAATGG-GTTTT-GC
836 CACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAA-GGAGTTTTGGC
** * * *
18157348 CCCAAACTTGGTAGATATGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAAC
1 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAAC
* * * *
18157413 TCAAAGTGTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCTATTTCAAACACTTTAATAGG-
66 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT-GGC
*
18157477 TACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
130 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
* *
18157542 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTACGCACA-CC
195 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * *
18157606 CCCGACCCCCCGATCGTCGGAACGCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCAAT
260 CCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGAT
* * * * *
18157671 GGTGCCCCGACGAAGAAAAATGCGACACTAGCACATGCCTAAGCCCAACATGTGCTGTCGTAACC
325 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACC
* *
18157736 CTTGGTCTGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTGGACTGGGAATGAACTCCGT
390 CTCGGTCTGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * *
18157801 ATGCCTAAGTCAACCCATGAAACGAACGTGCAGGCGCTCAGTCGGCTAGAAGGGCGGGATGCGCA
455 ATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCA
* * * * *
18157866 AGCCAGGGATTGTCCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCAGCATCCCTCGATCCGA
520 AGCCAGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGAT-CGA
* **
18157931 -TCCGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGTAAACCGACGAAATGAGCGGGCAGGC
584 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGC--GC-GGC
18157995 GGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
646 GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
18158060 GGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTACGGCTTGTAAATTCAT
710 GGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
18158125 ACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACG
775 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * *
18158190 ATTTTTAAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTTTTCAAAACGAG-TTTGG-
840 ATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
* * * *
18158247 CCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAAC
1 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAAC
* * *
18158312 TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGGT
66 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
18158377 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
131 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
*
18158442 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACA-CCC
196 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * *
18158506 CCGACCCCCCGATCGTCGGAACGCCAATGCCGCCGGTCAGGTTCTTCGGTGATGCTCTGACGATG
261 CCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATG
* *
18158571 GTGCTCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAACATGTGCTGTCGCAACCC
326 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCC
* * *
18158636 TTGGTCTGGTCCGATCCTAGACTGAGAATGAACTCCGTATGCTTGGACT-GGAATGAACTCCGTA
391 TCGGTCTGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
*
18158700 TGCCTAAGTCAACCCATGAAACG-A-------GCG-T------G-C---AGGGCGGGATGCGCAA
456 TGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAA
* * *
18158746 GCCAGGGATCGACCGGGTCCCCCTTTGCGTGCTGTCGATCCTGCTACAGCAACCCTCGATCTGA-
521 GCCAGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATC-GAG
** *
18158810 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTAAACTGACGAAATGAGCG-GGCGGAC
585 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGCGGCGG-C
* *
18158874 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGGTAGGGTGGTTGGTG
649 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
**
18158939 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
714 GGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
18159004 TGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTT
779 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * * **
18159069 TTGAAACTCTTTGCGGTTCCGAATTTTTTAAAATTTTTTCGGAAGTTGTTTTGGC
844 TTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
* *
18159124 CCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCACGCATAAAAAAATTCAGCTAAAAAC
1 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAAC
* * * *
18159189 TTGAAGTGTACGAGATTTTGTGGCCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCT
66 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
18159254 ACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
131 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
* * *
18159319 AGGGATAGGGGG-CAATATAAGGGCCAAGTACCAGAACCCATCGCATATCATGTGCGTACACCCC
196 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
** * * *
18159383 TCTCGGCCCCCCGATCAACGGAACCCCAATGTCACCGGTCAAGTTCT-C-----TG----G-CGA
261 -C-CGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGA
* * * *
18159437 ----GCCTCGATGAAGAAAAATGCGGCACCAGCACATGCCTGAGTCCAGCATGTGCTGTCGTAAC
324 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAAC
* * *
18159498 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATTCTTAGACTGGGAATGAACTCCG
389 CCTCGGTCTGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * * * * *
18159563 TATGCCTAAGTCAATCCACTAAACGAACGTGCGGCCGCTCAGCCGACCAGAGGGGCAGGATACGT
454 TATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGC
* * ** ** * * *
18159628 AAGTCGGGGATC-AGTGGGTCCCCCTCTACGTGCTACCGATCCTGCTTGCTGCAA-CCTCG-TCT
519 AAGCCAGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCCTGC-TACCGCAACCCTCGATCG
* * *
18159690 AGTCTGATCTTAGACTGGGAATGAAACTCCGTAATG-CTAAGCCAACCGGCGAAA-CAGGCGGGC
583 AGTCCGATCTTAGACTGGGAATG-AACTCCGT-ATGCCTAAGCCAACCGACGAAATGA-GC--GC
* * * * * *
18159753 GACCGGGCAGGCGGGCAGTACGTCGGCCAGAGAGACAGGATGCGCAAGCTGTGGATCGATAGGAA
643 G-GC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA-G--
* * * **
18159818 GTGTGGTAGGTGGGTTTAGGTATATCTTCATATTTCTATGTATCGCAATGAGATTTTTATGGCTT
703 G-GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGT-GC-CAATGCCATTTTTATGGCTT
* * * *
18159883 GTAAATTCA-AAAATTGTCCCCTTAAAG-CTCCACAGTGAAGTTTTCATGGGAAGGACGACTCGT
765 GTAAATTCATACAATGGT-CCCTT-AAGCCTTCAC-GTGAAG-TTTCATGGCAA-GACGACTCGT
* * * * *
18159946 TTTATATTTTTCATGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTGTC-AAATG
825 TTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAA-G
18160010 GAGTTTTGGC
889 GAGTTTTGGC
* * * *
18160020 CCCAAACTTGGTAGACATGATCCTTGAATTTTTGTTGGCATG-AAAAAAACAATTCAGCTAAAAA
1 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAA-AATTCAGCTAAAAA
* * * * ** *
18160084 CCCGAAGTGTATAGGATTTTGTTATGATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGC
65 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
18160149 TACTAGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTCAAGGTTTGAT
130 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
* *
18160214 TAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCC
195 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC
* * * * * *
18160279 CCCCGGCCCTCCCGATCGTCGAAAACCCAATGCTGTCGGTTAGGTTCTCCGACGATGCT-C--C-
259 CCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACG
* * **
18160340 A----G---CG--G-AGAAAATTGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA
323 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAA
* * * * * *
18160395 CTCTAGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACTTC
388 CCCTCGGTCTGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * *
18160460 GTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
453 GTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCG
* * * ** * *
18160525 CAAACCGGGGATCGACCGGGTCCCCCTCTATGTGCTACCGAACCTGCTACCGCAACCCTCGGTCC
518 CAAGCCAGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGAT-C
* * *
18160590 G-GTCCGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCGATGAAATGA--GC-G-G
582 GAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGCGGCG
* *
18160650 GCGGGCGAGCACTACGCTGGCCAGAGAGATC-GGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
647 GCGGGCGGGCACTACGCCGGCCAGAGAGA-CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *** * *
18160714 GTTGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCTATTTTTATAG-TTGTAAATTCATT
711 GTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCA-T
* *
18160778 A-AATGGTCCCTTAAGCCTTCACGTGAAGTTTCCTGGCAAGACGACTCGTTTTCTATTTTTCATG
775 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * * * *
18160842 ATTTTCAAAACTTTTTACGGTTCAGAATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGC
840 ATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
*
18160901 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAACTAAAAAC
1 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAAC
* * *
18160966 TCGAAGTGTACAAGATTTTGTGACCATATGAAATAAGTGTCCCCATTACAGACACTTTAATGGCT
66 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
**
18161031 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
131 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
* * * *
18161096 AGGGATAGGGGGCCAAGATAAGGGCCAAGTACCAGCACCCATTGCACTTCACGTGCGCACACCCC
196 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
* * * * *
18161161 CTCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATTCTCCGACA
260 C-CCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACG
* * * *
18161226 ATGGTG-CCCGGCGAAGAAAAATGCGGGACCAGCACATGCTTGAGCCTAGCATGTGCTGTCGCAA
323 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAA
18161290 --C-C---C---TCCG-TC-----C-----A-G-A--CCG-AT-CTTAGACTGGGAATGAACTCC
388 CCCTCGGTCTGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * * *
18161329 GTATGCCTACGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCTGGCCAGAGGGGCGGGATGTG
453 GTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCG
** * *
18161394 CAAGCCAGGGATCGACCGGGTTCCCCCTCTGTGTGTTGTCGATCCTGCTGCCGCAACCCTCGATC
518 CAAGCCAGGGATCGACCGGG-TCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATC
* * * * *
18161459 TAGTCCAATCTTATACTGGGAATGAACTCCGTAT-CCTAAGCCAACCGATG-AA--A---C-G-A
582 GAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGCGGCG
* * *
18161515 GCGGGCGGGCATTACGCCGGCCAGAGAGACGGGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGA
647 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
18161580 CGGGTTTAGGGACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
712 TGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
18161645 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
777 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * *
18161710 TTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGA
842 TTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
*
18161767 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAACTAAAAAC
1 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAAC
* * * *
18161832 TCGAAGTGTACAAGATTTTGTGACCATATGAAATAAGTGTCCCCATTACAGACACTTTCATGGCT
66 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
18161897 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTATAAGGGGGTGTGAGTTCTCAAGGTTTGATG
131 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
*
18161962 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAACATGTGCGCA-ACCCC
196 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* *
18162026 CCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCA-G---T----T--T-CTCCGGCGAT
261 CCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGAT
* ** * *
18162080 GGTGCCCTGGTGAAGAAAAATGCGGCACCAGCACATG-CTCGAGCCGAGCATGTGCTGCCGCAAC
325 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGTCGCAAC
* * * *
18162144 CATCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGAATGAACTCCG
389 CCTCGGTCTGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * *
18162209 TATGCCTAAGCCAACCGACGAAATGAGCGAGCGGGCG
454 TATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCG
18162246 GGCCAGAGAG
Statistics
Matches: 4321, Mismatches: 442, Indels: 293
0.85 0.09 0.06
Matches are distributed among these distances:
852 13 0.00
853 51 0.01
856 1 0.00
859 2 0.00
862 5 0.00
863 39 0.01
864 105 0.02
865 141 0.03
866 372 0.09
868 6 0.00
869 115 0.03
870 66 0.02
871 3 0.00
873 6 0.00
874 3 0.00
875 231 0.05
876 49 0.01
877 199 0.05
878 5 0.00
879 215 0.05
880 1 0.00
881 305 0.07
882 87 0.02
883 70 0.02
884 50 0.01
885 23 0.01
886 8 0.00
887 82 0.02
888 4 0.00
889 2 0.00
890 6 0.00
891 82 0.02
892 10 0.00
893 38 0.01
894 9 0.00
895 63 0.01
896 254 0.06
897 75 0.02
898 543 0.13
899 685 0.16
900 56 0.01
901 3 0.00
902 232 0.05
903 3 0.00
904 2 0.00
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATG
GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCC
TCGGTCTGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAA
GCCAGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCGAGT
CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGCGGCGGCGG
GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
AAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
Found at i:18160442 original size:26 final size:26
Alignment explanation
Indices: 18160413--18160462 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18160403 CCGGTCCGAT
18160413 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
*
18160439 CTTAGACTGGGAATGAACTTCGTA
1 CTTAGACTGGGAATGAACTCCGTA
18160463 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:18162197 original size:26 final size:26
Alignment explanation
Indices: 18162161--18162213 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18162151 CTGGTCCGAT
*
18162161 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18162187 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18162213 C
1 C
18162214 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18164008 original size:26 final size:26
Alignment explanation
Indices: 18163972--18164024 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18163962 CCGGTTTGAT
* * *
18163972 CTTATACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
18163998 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
18164024 C
1 C
18164025 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:18166443 original size:26 final size:26
Alignment explanation
Indices: 18166405--18166457 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18166395 CCAGTCCGAT
* *
18166405 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
*
18166431 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
18166457 C
1 C
18166458 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:18167920 original size:875 final size:876
Alignment explanation
Indices: 18165132--18173417 Score: 6121
Period size: 887 Copynumber: 9.5 Consensus size: 876
18165122 CAAACTCAAC
* *
18165132 AGACGTGATCCTTGTATTTTTTTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
1 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
18165197 AGATTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATAGTTTAATGGCTACTGGTAGCAA
66 AGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
18165262 ACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGAGG
130 ACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
18165327 GCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATTATGTGCACACACCCCTCCCGGCCCCC
195 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCGGCCCCC
* ** * * * *
18165392 CTGATCGCCGAAACCCCAATGCCGCCAATCAGGTTCTCCGGTGATGGTGCCCCGGCGATGAAAAA
259 C-GATAGCCG-AACCCCAATGCCGCCGGTTAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAA
* * * * *
18165457 TGCGGCACTAGCACATGCCCGAGCCCAACATGTGCTACCGTAACCCTCGATCTGATCCGATCTTA
322 TGCGGCACCAGCACATGCCC-AGCCCAACATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTA
* * *
18165522 GACTGGGAATGAACTCTGTGTGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
386 GACTAGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * *
18165587 AACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCCCAAGCTAGGGATCGGTTGGGTC
451 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCGGTCGGGTC
* * * *
18165652 CCCCTCTGCGTGCTGCCGATCCTACTACCACAACCCTCGGTCTGATCCAATCTTAGACTGGGAAT
516 CCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCTGGTCTAATCTTAGACTGGGAAT
* *
18165717 GAACTTCATATGCCTAAGCCAACCGACGAAACGAGAGAGCGGGTTGGCAGGCGGGCACTATGTTG
581 GAACTCCATATGCCTAAGCCAACCGACGAAAC--GA-A-CGGG-T-G--GGCGGG-ACTA-GTCG
* * *
18165782 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTAGGTTTAGG-CA----CA
636 GCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGACATCTTCA
18165842 -A---TGTGCCAATGCCATTTTTAT-GCTTATAAATTCATACAATGGTCCCTTAACCCTTCACGT
701 TATTTTGTGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAACCCTTCACGT
*
18165902 GAAATTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATTCGA
766 GAAATTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA
*
18165967 TATTTTTT-AAATTTTTTTGGGATGAGTTTTGGCCCCCAAACTTGGT
831 TATTTTTTAAAATTTTTTTGGAATGAGTTTTGG-CCCCAAACTTGGT
*
18166013 AGACGTGATCCTTGTTTTTTTGTTGGCATGCACTAAAAAAA-TCAGCTAAAAACTCGAAGTGTAC
1 AGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTAC
18166077 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
65 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
18166142 ACCTGTAAAAT-TCAAATGCTCTTTAAGAGGGTATGAGTTCTTGAGGTTTGATGAGGGATAGGGG
130 ACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
18166206 ACAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
195 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
* *
18166271 GATTGCCGGAACCCCAATGTCGCCGGTTAGGTTCTTCGACGATGCTCCGGTGATGGTGCCCCGAC
260 GATAGCC-GAACCCCAATGCCGCCGGTTAGGTTC-TC--CG--G---C---GATGGTGCCCCGAC
* * * * *
18166336 GAAGATAAATGCGGCACCAGCACATGACCAGCCCAACATGCGCTGTCGCAACCCTCGATCCAGTC
313 GAAGAAAAATGCGGCACCAGCACATGCCCAGCCCAACATGTGCTGCCGCAACCCTCGATCCGGTC
* * *
18166401 CGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTTA
378 CGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
* * * **
18166466 ACCCACGAAACGAGAGTGCAGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGTAAGCC-GAGGATC
443 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCAG-GGATC
* * * * * * *
18166530 GGCCAGGT-CCCTTCTGTGTGCTACCGATCCTGCTTCCACAACCCTC-AGTCTAGTCTAATCTTA
507 GGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGA-TCTGGTCTAATCTTA
** * ** *
18166593 GACTGGGAATGAACTCTGTATACCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGTAGG
571 GACTGGGAATGAACTCCATATGCCTAAGCCAACCGACG-AA--A-CGAACGGGTGGGC--G--GG
* * *
18166658 CACTACGTCGGCCAGAGAGGCGGGATACACAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAG
628 -ACTA-GTCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
18166723 GTACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGG-TTTTAAATTCATACAATGGTCCC
691 G-ACATCTTCATA--TTT-TGTGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCC
* **
18166787 TTAACCCTTCACGTGAAATTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAAC
752 TTAACCCTTCACGTGAAATTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
18166852 TTTTTACGGTTCGATATTTTTTAAAATTTTTTTGGAATGAGTTTTGGCCCCAAACTTGGT
817 TTTTTACGGTTCGATATTTTTTAAAATTTTTTTGGAATGAGTTTTGGCCCCAAACTTGGT
* *
18166912 AGACGTGATCCTTGTATTTTTGTTGGCATGCTCAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
1 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
18166977 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
66 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
18167042 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGCATGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
131 CCTGTAAAATCTCAAATGCTCTTTAAGAGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
** ** *
18167107 CCAATATAAGGGCCAAGTACCAGTGCCCATCTTACAT-ATGTGTGCACA-CCCCCCGGCCCCCCG
196 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCG
* * *
18167170 ATAACCAGAACCCCAATACCGCCGGTTAGGTTCTCCGGCGATGGTGCCCCAACGAAGAAAAATGC
261 ATAGCC-GAACCCCAATGCCGCCGGTTAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGC
* * * * * * * * *
18167235 AGCTCCAGCACATGCCCAAGCCCAGCTTGTGCTGCCACATCCCTCAATCCGGTCTGATCTTAAAC
325 GGCACCAGCACATGCCC-AGCCCAACATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGAC
* * ** *
18167300 -CGGAAAGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAAC
389 TAGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* **
18167364 GAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCAATCGGGTCCCC
454 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCGGTCGGGTCCCC
* * * *
18167429 CTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGATTTGGTCTGATCTTAGACTGGGAATGAA
519 CTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCTGGTCTAATCTTAGACTGGGAATGAA
* *
18167494 CTCCATATGCCTAAGCCAATCAACGAAACGAACGGGTGGGCGGG-C-A-TCGGCCAGAGAGACGG
584 CTCCATATGCCTAAGCCAACCGACGAAACGAACGGGTGGGCGGGACTAGTCGGCCAGAGAGACGG
*
18167556 TATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
649 GATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG-ACATCTTCATATTT-TG--TG
* * *
18167621 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
710 CCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAACCCTTCACGTGAAATTTCA
* * * * * **
18167686 TGGCAGGACGACTCGTTCTCTATTTCTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTA
775 TGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGATATTTTTTA
* * * * *
18167751 AAAGTTTTTCGAAAGGAGTTTTGGCCCAAAACTTGGT
840 AAATTTTTTTGGAATGAGTTTTGGCCCCAAACTTGGT
* * *
18167788 AGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCT-AAACCTCGAAGAGTACA
1 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
18167852 AGATTTTGTGACCATTTGAAAAAAGTGTACCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
66 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * *
18167917 CCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGGATAGGGGG
131 CCTGTAAAATCTCAAATGCTCTTTAAGAGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
18167982 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCACCCGGCCTCCT
196 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCGGCC-CCC
* * * * * * * *
18168047 CGATCGTCGACCCCTCAATGCCTCCTGTCAGGTTCTCCGACGA---TGCCCCG--G-TG----AT
259 CGATAGCCGAACCC-CAATGCCGCCGGTTAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
* * * * * * * * *** *
18168102 G-GTGC-CCCG-ACA----AAG--AAAAATGCGGTACC-AAAAAAT-G--CCCGT---ATGCTTA
323 GCG-GCACCAGCACATGCCCAGCCCAACATGTGCTGCCGCAACCCTCGATCCGGTCCGAT-CTTA
* * * * * * *** * * ** * **
18168151 GACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTGCGGGCGCTCAGTC-GG
386 GACTAGGAATGAACTCTGTATG-CTTAGACTAGGAATG-AAC-TCCGT--ATGC-CTAAGTCAAC
* ** * *** *
18168215 CCA-G--A-G-G-G-GC-GG-GAT-ACGCAAGCCA-AGGATTGGCCGGG-T-CCCCTTCTACGTG
445 CCACGAAACGAGCGTGCGGGCGCTCA-GCCGGCCAGAGG---GG-CGGGATGCACAAGCCA-G-G
* * * * * * * ** * *
18168267 TTG-TCGATCCTGCTGTCGCGACCCTC-G-GTTCGGTCTGTTCTTAGACTAGAATGAACTC-CG-
503 --GATCGGT-C-G-GGTC-C--CCCTCTGCGTGCTG-CCGATCCT-G-CTACCA-CAACCCTCGA
* * * * ** **
18168327 TAT-GCCTAAGCCT--ACT--G-ATGAA----ATGA-G-C---G------GACG-GGCGGGCGGG
556 TCTGGTCTAATCTTAGACTGGGAATGAACTCCAT-ATGCCTAAGCCAACCGACGAAACGAACGGG
** * * *
18168370 CAGGCGGGCACTACGTCGGCTAGAGAGACGGGATACGCAAGCCGTGGATCGACATGGTGGTAGGT
620 TGGGCGGG-ACTA-GTCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * *
18168435 AGGTTTAGGCACTTCTTCATATTTCTGTGTGTCAATGCCA-TTTTATGGCTTGTAAATTCATACA
683 GGGTTTAGG-ACATCTTCATA-TT-T-TGTGCCAATGCCATTTTTATGGCTTATAAATTCATACA
* * * *
18168499 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
744 ATGGTCCCTTAACCCTTCACGTGAAATTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATT
* ** * * * * * **
18168564 TTTCAAACTTTTTACGGTTCGGGATGTTTTAAAATTTTTTCGAAAGGAGTGTTGGTGCCAAACTT
809 TTTGAAACTTTTTACGGTTCGATATTTTTTAAAATTTTTTTGGAATGAGTTTTGGCCCCAAACTT
18168629 GGT
874 GGT
* * * *
18168632 AGACATGATCCTTGTATTTTTGTTGGCATGCCCAAAAGAATTCAGCTAAAAACTCAAAGTGTACA
1 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
18168697 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAA
66 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* **
18168762 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
131 CCTGTAAAATCTCAAATGCTCTTTAAGAGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* ** ** *
18168827 CCAATATAAAGGCCAAGTACCAGTGCCCATCATACAT-ACGTGCGCACA-CCCCCCGGCCCCCCC
196 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCC
* * *
18168890 GATAGCCGGAACCCAAATGCCACCGGTTAGGTTCTCCGACGATGCTCCGGCGATGCTCCGGCGAT
260 GATAGCC-GAACCCCAATGCCGCCGGTTAGGTTCTCCGGCGA---T---G-G-TG---C--C---
* * *
18168955 GATGCCTTGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACATCC
308 ----CC--GACGAAGAAAAATGCGGCACCAGCACATGCCC-AGCCCAACATGTGCTGCCGCAACC
* * * * * * *
18169020 CTCGGTTCGGTCTGATCTTAGACTGGGAAAGAACTCCGTATGCTTAAACTAGGAATGAACTCCGT
366 CTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGT
* * * * ** * * *
18169085 ATGCCTAAATCAACCTACGGAATGAGCGTGCGGGCGCTCAGCTAGCCAGAAGGCCGGGATGCGCA
431 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACA
* * ** * * * * * * *
18169150 AGTCGGGGATC-AACTGGGTCCCCCTCTGCATGTTACCAATCCTGCTATCATAACCCTCGATCTA
496 AGCCAGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCTG
** * * *
18169214 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACG-A---GCGGGC
560 GTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAACGGGTGGGC
* ** *
18169275 GGG--TA---GG--TG-G-G-C---ACTACGCCGGTCGTGGATCGATAGGGTGAG-AGGTGGGTT
625 GGGACTAGTCGGCCAGAGAGACGGGA-TACGCAAGCCGTGGATCGATAGGGTG-GTAGGTGGGTT
* * *
18169326 TAGGCACATCTGCATATTTGTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACGATGGT
688 TAGG-ACATCTTCATATTT-T--GTGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGT
* * *
18169391 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
749 CCCTTAACCCTTCACGTGAAATTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * * *
18169456 AACTTTTTACGGTTCGACATTTTTCAAAAGTTTTTCGGAAGGAGTTTTGG-CCCAACACTTGGT
814 AACTTTTTACGGTTCGATATTTTTTAAAATTTTTTTGGAATGAGTTTTGGCCCCAA-ACTTGGT
* * * *
18169519 AGATGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAACCTCGAATTGCTAC
1 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG-TAC
** ** * ** **
18169584 TGGCA----GCAAACC---TG-TAAAA---T-CCCAAAT--G-CTTTTTAA-GG-----GG--G-
65 AAG-ATTTTG-TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* ** * * * * * ** * * **
18169625 -----TGTGAGTTCTC-GA-GGT-TTGATGAGGG-ATAGGGGGC-C-A---AT-ATAAGGGCCA-
128 AAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTAT-GAGTTCTCGAGGTTTGATGAGGGATAG
* ** ** ** * * ** * ** *
18169674 AGTACCAGCACCCATGGCACATCATGTGCACA-CACCCCCCCGGCCCCCCGATCGT-CGGA-A-C
192 GGGGCCAATA-TAAGGGC-CA--A-GTAC-CAGCA-CCCATC-GCACATC-AT-GTGCGCACACC
**** * * ** * * *
18169735 CCTAATG-CCGCCGGTCAG--GTTCCCTGACGAA-GCTC-CAGAGAT-GGTGC-CC--CGA----
247 CCCCCGGCCCCCCGAT-AGCCGAACCC---C-AATGC-CGCCG-GTTAGGTTCTCCGGCGATGGT
* ** ** * *** * * * *
18169787 ----CGAAGAA-AAATGTGACACCAGCA-CA-TGCCCGAGCCCAGCATGTGCTGTCACAACCCTC
305 GCCCCGACGAAGAAAAATG-CGGCACCAGCACATGCCCAGCCCAACATGTGCTGCCGCAACCCTC
* * * * * *
18169845 GGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCATATG
369 GATCCGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATG
* * * * ** * ** *
18169910 CCTAAGTCAACCCACGAAACAACCGTACGGGCGCTCAG-CGGCCGGAGCAGTGGGATGCGTAAGT
434 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGC
* ** * * * ** * *
18169974 CGGGGATCGAACAGGG-CCCCCTCTACGTTCTACCGATCCTGCTACTGCAACCCTCAATCCGGTC
499 CAGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCTGGTC
* * * *
18170038 TGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAATCGACGAAACGAACGGGCGGGCGAG
563 TAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAAC-GG-GTG-G-G
* * * * * * *
18170103 CGGGTGGGCACT-GCACCAGCCAGAGAGACGGTATGCGTAAGTCGTGGATCGATAAGGTGGTAGG
624 C----GGG-ACTAG--TCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
18170167 TGGGTTTAGGCACATCTTCTTATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
682 TGGGTTTAGG-ACATCTTCATA-TTTT--GTGCCAATGCCATTTTTATGGCTTATAAATTCATAC
* * * *
18170232 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
743 AATGGTCCCTTAACCCTTCACGTGAAATTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGAT
* * *
18170297 TTTTGAAACTTTTTACAGTTCAGA-ATTTTTTAAAATTTTTTCT-GAAGGATTTTTGGCCCCAAA
808 TTTTGAAACTTTTTACGGTTC-GATATTTTTTAAAATTTTTT-TGGAATGAGTTTTGGCCCCAAA
18170360 CTTGGT
871 CTTGGT
* * *
18170366 AGACATGATCATTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACA
1 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
18170431 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTAGAAGCAAA
66 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * * *
18170496 CCTGTAAAATCTTAACTACTCTTTAAG-GGGTGTGAGTTCTCAAGGTTTGATGAGGGATA----G
131 CCTGTAAAATCTCAAATGCTCTTTAAGAGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
18170556 --------AGGGCCAAGTACCAGCACCAATCGCGCATCATGTGCACACA-CCCCCCGGCCCCCCC
196 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCC
* ** * * * *
18170612 GATCGTCAAAACCCCAAAGCCGTCGGTCAGGTTCTCCGACGATGCTCAGGTGATGGTGCCTCTG-
260 GATAG-CCGAACCCCAATGCCGCCGGTTAGGTTCT-C--CG--G--C----GATGGTGCC-CCGA
* * * *
18170676 CAAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTC-AGTCTG
312 CGAAGAAAAATGCGGCACCAGCACATGCCC-AGCCCAACATGTGCTGCCGCAACCCTCGA-TCCG
* * * * **
18170740 GTCCGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAACTATGTATGCCTAAG
375 GTCCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAG
* * * * **
18170805 TCAACCCACGAAACGAGCGTGCGGACGCTCAGCCAGCCAGAGGGGCGGCATGCGCAAGCTGGGGA
440 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCAGGGA
* * * * *** * *
18170870 TCGATCGGGTTCCCCTCTGCGTGCTGCAGATCATGCTATTGCAACCCTCGGT-TCGGTCCAATCT
505 TCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCT-GGTCTAATCT
* * * *
18170934 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGGACGGGCGGGCGGGCA
569 TAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACG-AA--A-CGAACGGGTGGGCGGG-A
* * * *
18170999 CTACGCCGGCCAGAGAGATGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
629 CTA-GTCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG-
* * * * * *
18171064 AAATCTTTATATTTTTACATGCCAATGCCATTTTTATGACTTGTAAATTCATACAGTGGTCCCTT
692 ACATCTTCATA-TTTT--GTGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTT
* * * * *
18171129 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAGAC-T
754 AACCCTTCACGTGAAATTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * * *
18171193 TTTGCGGTTCGAGATTTTTT-AAATATTTTTTGG-ATGGAGTTTTTGCCACAAACTTGGT
819 TTTACGGTTCGATATTTTTTAAAAT-TTTTTTGGAAT-GAGTTTTGGCCCCAAACTTGGT
* * * * *
18171251 GGATGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGATAAAAACTCAAAGTGTACA
1 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
18171316 AGATTTTGTGACCATTTGAAAAAAATGTCCCCATATCAAACACTTTAATGGCTACTGGCAGCAAA
66 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* ** *
18171381 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGGGTGAGTTCTCGAGGTTTCATGAGGGATAGGGGG
131 CCTGTAAAATCTCAAATGCTCTTTAAGAGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
18171446 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCACA-CCCCCCGGCCCTCCA
196 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC-CCC
* * *
18171510 GATCGCCAGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCC-A-
260 GATAGCC-GAACCCCAATGCCGCCGGTTAGGTTCT-C--CG--G---C---GATGGTGCCCCGAC
* * * * ** * * *
18171573 GCAAGAGAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCATAACCCTCGGTCTGA
313 G-AAGAAAAATGCGGCACCAGCACATGC-CCAGCCCAACATGTGCTGCCGCAACCCTCGATCCGG
** * * * *
18171638 TTTGATCTTAGACTGGGAATGAACTCCGTATGATTAGACTGGGAATGAACTCCGTATGCCTAAGT
376 TCCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
* * ** * * * *
18171703 CAACTCACGAAACTAGCGTGCGGGCGCTCAGCCTTCTAGAGGGGCAGGATGCGCAAGTC-GGAGA
441 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCAGG-GA
* * * * * ** * * *
18171767 TCGATCGGGTCCCCCTTTGTGTGCTGCCGATCCTGTTGCCGTAACCCTCGTTCTAGTCCAATCTT
505 TCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCTGGTCTAATCTT
* ** *
18171832 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGTGCAGGTGGGCGAGCGGGCAC
570 AGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAAC-GG-GTG-G-GCGGG-AC
* * * **
18171897 AATGTCAGCCTGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
630 TA-GTCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG-A
* * *
18171962 CATCTTCATATTTTTGCCTTCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
693 CATCTTCATA-TTTTG--TGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTA
* * * * * * *
18172027 AGCCTTCACGTGAAGTTTGATGGCAAGACGACTCGTTTTCAAATTTTCACAATTTTTGAAACTTT
755 ACCCTTCACGTGAAATTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
** * **
18172092 TTACGGTTCGGGATTTTTTAAAATTTTTTCGG-ATGTAGAGTTGGCCCCAAACTTGGT
820 TTACGGTTCGATATTTTTTAAAATTTTTTTGGAATG-AGTTTTGGCCCCAAACTTGGT
* * *
18172149 AGACGTGATCCTTGCAATTTTGTTGGCATGCACAAAGAAATTCAGCTAAAAACCTCCGAAGTAGT
1 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA-CT-CGAAGT-GT
* * * *
18172214 ACAAGAATTTTGTGTCCATTTG-AAAAA-TGTGCCCATTTCAAGACACTTTATTGGCTATTGGCA
63 ACAAG-ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGC-
*
18172277 AGCAAACCTGTAAAATCTTCATAATGCTTTTTTTAAG-GGG-ATGTAGTTC-CGA-GTTTGGATG
125 AGCAAACCTGTAAAATC-TCA-AATGC--TCTTTAAGAGGGTATG-AGTTCTCGAGGTTT-GATG
* *
18172338 AGGGATTA-GGGGCCAACATAA-GGCCAAGTACCAG-A---AT-GCACATCATGTGCAG-A-ATC
184 AGGGA-TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-GCACACC
*** *** * * * * ** ** * * *
18172394 CGATC-GCGTAACCTAT-GTCGTCGTACCCTAAAGCATCC--CAACGATCT---GAGAT--TGCC
247 CCCCCGGC-CCCCCGATAG-C--CGAACCCCAATGCCGCCGGTTAGGTTCTCCGGCGATGGTGCC
* * ** *
18172450 CCGAC-AAGAAAAATGAGG-ACCACCACA-GTCGAAG---AGCATG-GCTGCCGCAACCC-CGAT
308 CCGACGAAGAAAAATGCGGCACCAGCACATG-CCCAGCCCAACATGTGCTGCCGCAACCCTCGAT
* * * * *
18172507 CCGATCC-A--ATAGA-T-GG---GAACTCCGTCTG--TAGACT--GAGATG--C-CTGTATGCC
372 CCGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTAGGA-ATGAACTCCGTATGCC
* * * * * * *
18172557 T-AGTCAACCCACGAAACGAGC-TGCGGGCACTCAGCCTGCCATAGGAGCAGGATACGCAAGCC-
436 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCA
* *
18172619 ---A-CGGTCGGGTCCCCCTCTACGTGCT--CGATCCTGCTAACCACAAACCCTCGATCCGGTCT
501 GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT-ACCAC-AACCCTCGATCTGGTCT
* * * * * *
18172678 GATCTTAGACCTAGGAATGAACTCCGTATGCCTAAGCCGAACTGACAGAAACGAGCGGG-CGGC-
564 AATCTTAGA-CTGGGAATGAACTCCATATGCCTAAGCC-AACCGAC-GAAACGAACGGGTGGGCG
* * * ** * * * *
18172741 -AACTACGCCGGCCAAAGAGTACGGGAT--------C-T-G-T-TTTAAGGTTGTTGGTGTGTTC
626 GGACTA-GTCGGCCAGAGAG-ACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTG-GGT-
* *
18172793 TGTAGAGCACATC-TCATATTTTCTACATGCCAATG-CATTTTTAATGGCTTCTAAATTCATACT
687 T-TAG-G-ACATCTTCATA-TTT-T--GTGCCAATGCCATTTTT-ATGGCTTATAAATTCATAC-
* * ** * *
18172856 AAATGGTCCC-TAAACCTTCACGTGAAGTGTTCATGGCAAAGACAACTCATTTTCTGTTTTTTAT
743 -AATGGTCCCTTAACCCTTCACGTGAAAT-TTCATGGC-AAGATGACTCGTTTTC--TATTTT-T
* ** * * * *
18172920 AAACGA--TTTGAAACTTTTTTTGGTTCGAGAATATTTTT-AAATTTTTTCGGAAGGGGTTTTGG
802 -CACGATTTTTGAAACTTTTTACGGTTCGA-TAT-TTTTTAAAATTTTTTTGGAATGAGTTTTGG
*
18172982 CTCCCTAAACTTCGT
864 C-CCC-AAACTTGGT
* *
18172997 AAACAGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTAC
1 AGAC-GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * * *
18173062 AAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTTAGACAGTTTAGTGGCTACTGGCAACAA
65 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
18173127 ACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCGAGGTTTGATGAGGGATAGGGG
130 ACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
18173192 GCCAATATAAGGGCTAAGTGCCAGCACCCATCGCACATCATGTGTGCACA-CCCCCC-GCCCCCC
195 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
* ** * * *
18173255 GATCGTTGGAACCCTAATGCCACCTGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGA
260 GATAG-CCGAACCCCAATGCCGCC-GGTTAGGTTCT-C--CG--G---C---GATGGTGCCCCGA
* * * * * *
18173320 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCCGTAACCCTCGGTCTGA
312 CGAAGAAAAATGCGGCACCAGCACATGCCC-AGCCCAACATGTGCTGCCGCAACCCTCGATCCGG
* * *
18173385 TCCGATCCTAGACTGGGAATGAACTCCGTATGC
376 TCCGATCTTAGACTAGGAATGAACTCTGTATGC
18173418 CTAAGCCAAC
Statistics
Matches: 5995, Mismatches: 940, Indels: 938
0.76 0.12 0.12
Matches are distributed among these distances:
821 107 0.02
822 121 0.02
823 2 0.00
824 7 0.00
825 10 0.00
827 3 0.00
828 1 0.00
829 2 0.00
833 3 0.00
836 12 0.00
837 3 0.00
838 2 0.00
839 20 0.00
840 46 0.01
841 27 0.00
842 64 0.01
843 57 0.01
844 217 0.04
845 300 0.05
846 59 0.01
847 309 0.05
848 41 0.01
849 65 0.01
850 22 0.00
851 21 0.00
852 63 0.01
853 42 0.01
854 20 0.00
855 41 0.01
856 26 0.00
857 55 0.01
858 52 0.01
859 35 0.01
860 30 0.01
861 28 0.00
862 14 0.00
863 23 0.00
864 17 0.00
865 25 0.00
866 11 0.00
867 21 0.00
868 17 0.00
869 16 0.00
870 5 0.00
872 7 0.00
873 31 0.01
874 29 0.00
875 281 0.05
876 201 0.03
877 36 0.01
878 38 0.01
879 142 0.02
880 91 0.02
881 71 0.01
882 36 0.01
883 23 0.00
884 39 0.01
885 190 0.03
886 428 0.07
887 508 0.08
888 176 0.03
889 153 0.03
890 119 0.02
891 9 0.00
892 9 0.00
893 21 0.00
894 11 0.00
895 4 0.00
896 11 0.00
897 450 0.08
898 265 0.04
899 288 0.05
900 129 0.02
901 31 0.01
902 33 0.01
903 24 0.00
904 32 0.01
905 10 0.00
906 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (876 bp):
AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGAGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCG
ATAGCCGAACCCCAATGCCGCCGGTTAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCG
GCACCAGCACATGCCCAGCCCAACATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTA
GGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCGGTCGGGTCCCCCT
CTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCTGGTCTAATCTTAGACTGGGAATGAACT
CCATATGCCTAAGCCAACCGACGAAACGAACGGGTGGGCGGGACTAGTCGGCCAGAGAGACGGGA
TACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGACATCTTCATATTTTGTGCCAATG
CCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAACCCTTCACGTGAAATTTCATGGCAA
GATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGATATTTTTTAAAATTT
TTTTGGAATGAGTTTTGGCCCCAAACTTGGT
Found at i:18168943 original size:11 final size:11
Alignment explanation
Indices: 18168923--18168955 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
18168913 CGGTTAGGTT
*
18168923 CTCCGACGATG
1 CTCCGGCGATG
18168934 CTCCGGCGATG
1 CTCCGGCGATG
18168945 CTCCGGCGATG
1 CTCCGGCGATG
18168956 ATGCCTTGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.12, C:0.36, G:0.33, T:0.18
Consensus pattern (11 bp):
CTCCGGCGATG
Found at i:18169074 original size:26 final size:26
Alignment explanation
Indices: 18169036--18169093 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
18169026 TCGGTCTGAT
* *
18169036 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAAACTAGGAAAGAACTCCGTATG
*
18169062 CTTAAACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAAAGAACTCCGTATG
*
18169088 CCTAAA
1 CTTAAA
18169094 TCAACCTACG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (26 bp):
CTTAAACTAGGAAAGAACTCCGTATG
Found at i:18169909 original size:26 final size:26
Alignment explanation
Indices: 18169858--18169910 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18169848 CCGATCTGAT
**
18169858 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18169884 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18169910 C
1 C
18169911 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18171678 original size:26 final size:26
Alignment explanation
Indices: 18171645--18171695 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
18171635 TGATTTGATC
18171645 TTAGACTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
18171671 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
18171696 CCTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:18171837 original size:897 final size:898
Alignment explanation
Indices: 18169579--18173417 Score: 4179
Period size: 897 Copynumber: 4.3 Consensus size: 898
18169569 ACCTCGAATT
* *
18169579 GCTACTGGCAGCAAACCTGTAAAATCCCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
1 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
18169644 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATGGCACATCATGTGCACACAC
66 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-
* *
18169709 CCCCCCGGCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTC-CCTGACGAAGCTCCAG
130 CCCCCCGGCCCCCCGATCGTCAGAACCCTAATGCCGCCGGTCAGGTTCTCC-GACGATGCTCC-G
* * *
18169773 A-GATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCA
193 ATGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * *
18169837 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAAC
258 CAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * * * * **
18169902 TCCATATGCCTAAGTCAACCCACGAAACAACCGTACGGGCGCTCAG-CGGCCGGAGCAGTGGGAT
323 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCTGCCAGAGGAGCAGGAT
* * * * * *
18169966 GCGTAAGTCGGGGATCGAACAGGG-CCCCCTCTACGTTCTACCGATCCTGCTACTGCAACCCTCA
388 GCGCAAG-CGGGGATCGATC-GGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCG
** * *
18170030 ATCCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAATCGACGAAACGAACGGG
451 ATCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A---G
* * * * * * *
18170095 CGGGCGAGCGGGTGGGCACTGCACCAGCCAGAGAGACGGTATGCGTAAG-TCGTGGATCGATAAG
512 CGGACGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCT-GTGGATCGATAAG
* * *
18170159 GTGGTAGGTGGGTTTAGGCACATCTTCTTATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAA
576 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACATGCCAATGCCATTTTTATGGCTTGTAA
18170224 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
641 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
** * * *
18170289 TTCATGATTTTTGAAACTTTTTACAGTTC-AGAATTTTTTAAAATTTTTTCTGAAGGATTTTTGG
706 TTCACAATTTTTGAAACTTTTTACGGTTCGAGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * *
18170353 CCCCAAACTTGGTAGACATGATCATTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAA
771 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * *
18170418 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATA
836 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATG
* * * * * *
18170481 GCTACTAGAAGCAAACCTGTAAAATCTTAACTACTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTG
1 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * *
18170545 ATGAGGGATA----G--------AGGGCCAAGTACCAGCACCAATCGCGCATCATGTGCACACAC
66 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * * * *
18170598 CCCCCGGCCCCCCCGATCGTCAAAACCCCAAAGCCGTCGGTCAGGTTCTCCGACGATGCTCAGGT
131 CCCCCGG-CCCCCCGATCGTCAGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGAT
* * *
18170663 GATGGTGCCTCTG-CAAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGC
195 GATGGTGCC-CCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * *
18170727 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAACT
259 AACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
** * * *
18170792 ATGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGCCAGCCAGAGGGGC-GGCAT
324 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCTGCCAGAGGAGCAGG-AT
* * * * ** *
18170856 GCGCAAGCTGGGGATCGATCGGGTTCCCCTCTGCGTGCTGCAGATCATGCTATTGCAACCCTCGG
388 GCGCAAGC-GGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGA
* * * *
18170921 TTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGGAC
452 TCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAC
* * *
18170986 GGGCGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCTGTGGATCGATAGGGTGGTA
517 GGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAAGGTGGTA
* * *
18171051 GGTGGGTTTAGGCAAATCTTTATATTTTTACATGCCAATGCCATTTTTATGACTTGTAAATTCAT
582 GGTGGGTTTAGGCACATCTTCATATTTTTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
18171116 ACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACA
647 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACA
* * * * *
18171181 ATTTTTGAGAC-TTTTGCGGTTCGAG-ATTTTTTAAATATTTTTT-GGATGGAGTTTTTGCCACA
712 ATTTTTGAAACTTTTTACGGTTCGAGAATTTTTTAAA-ATTTTTTCGGAAGGAGTTTTGGCCCCA
* * * * *
18171243 AACTTGGTGGATGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGATAAAAACTCAA
776 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
18171308 AGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATATCAAACACTTTAATG
841 AGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATG
* *
18171366 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGGTGAGTTCTCGAGGTTTC
1 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
*
18171431 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCACAC
66 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* *
18171496 CCCCCGGCCCTCCAGATCGCCAGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGAT
131 CCCCCGGCCC-CCCGATCGTCAGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGAT
* * **
18171561 GATGGTGCCCC-A-GCAAGAGAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCAT
195 GATGGTGCCCCGACG-AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
** *
18171624 AACCCTCGGTCTGATTTGATCTTAGACTGGGAATGAACTCCGTATGATTAGACTGGGAATGAACT
259 AACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * *
18171689 CCGTATGCCTAAGTCAACTCACGAAACTAGCGTGCGGGCGCTCAGCCTTCTAGAGGGGCAGGATG
324 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCTGCCAGAGGAGCAGGATG
* * ** * * * *
18171754 CGCAAGTCGGAGATCGATCGGGTCCCCCTTTGTGTGCTGCCGATCCTGTTGCCGTAACCCTCGTT
389 CGCAAG-CGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGAT
** * * *
18171819 CTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGTGCAGG-T
453 CCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGAC
* * * * * * * *
18171883 GGGCGAGCGGGCACAATGTCAGCCTGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTA
517 GGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAAGGTGGTA
* * * *
18171948 GGTGGGTTTAGGCACATCTTCATATTTTTGCCTTCCAAAGCCATTTTTATGGCTTGTAAATTCAT
582 GGTGGGTTTAGGCACATCTTCATATTTTTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
18172013 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGACGACTCGTTTTCAAATTTTCACA
647 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACA
* * * **
18172078 ATTTTTGAAACTTTTTACGGTTCG-GGATTTTTTAAAATTTTTTCGGATGTAGAGTTGGCCCCAA
712 ATTTTTGAAACTTTTTACGGTTCGAGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * *
18172142 ACTTGGTAGACGTGATCCTTGCAATTTTGTTGGCATGCACAAAGAAATTCAGCTAAAAACCTCCG
777 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA-CT-CG
* * *
18172207 AAGTAGTACAAGAATTTTGTGTCCATTTG--AAAAATGTGCCCATTTCAAGACACTTTATTG
840 AAGT-GTACAAG-ATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAA-ACACTTTAATG
* * *
18172267 GCTATTGGCAAGCAAACCTGTAAAATCTTCATAATGCTTTTTTTAAGGGGATGT-AGTTC-CGA-
1 GCTACTGGC-AGCAAACCTGTAAAATC-TCA-AATGC--TCTTTAAGGGGGTGTGAGTTCTCGAG
*
18172329 GTTTGGATGAGGGATTA-GGGGCCAACATAA-GGCCAAGTACCAG-A---AT-GCACATCATGTG
61 GTTT-GATGAGGGA-TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
*** *** * * * *
18172387 CAG-A-ATCCGATC-GCGTAACCTATGTCGTC-GTACCCTAA-------AG-CA---TC-CCAAC
124 C-GCACA-CCCCCCGGC-CCCCCGA--TCGTCAGAACCCTAATGCCGCCGGTCAGGTTCTCCGAC
* * *
18172436 GAT-CT--GA-GAT--TGCCCCGAC-AAGAAAAATGAGG-ACCACCACA-G-TCGAAG---AGCA
184 GATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCG-AGCCCAGCA
* * * *
18172488 TG-GCTGCCGCAACCC-CGATCCGATCC-A--ATAGA-T-GG---GAACTCCGTCTG--TAGACT
248 TGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
18172541 GAG-ATG--C-CTGTATGCCT-AGTCAACCCACGAAACGAGC-TGCGGGCACTCAGCCTGCCATA
313 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCTGCCAGA
* * * *
18172600 GGAGCAGGATACGCAAGC---CA-CGGTCGGGTCCCCCTCTACGTGCT--CGATCCTGCTAACCA
378 GGAGCAGGATGCGCAAGCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCT-ACCG
** *
18172659 CAAACCCTCGATCCGGTCTGATCTTAGACCTAGGAATGAACTCCGTATGCCTAAGCCGAACTGAC
442 C-AACCCTCGATCCGGTCCAATCTTAGA-CTAGGAATGAACTCCGTATGCCTAAGCC-AACCGAC
* * *
18172724 AGAAACGA---G-CGGGC-GGC---AACTACGCCGGCCAAAGAGTACGGGAT-------CTGT--
504 -GAAACGAGCGGACGGGCGGGCGGGCACTACGCCAGCCAGAGAG-ACGGGATGCGCAAGCTGTGG
* * * *
18172772 -T--TTAAGGTTGTTGGTGTGTTCTGTAGAGCACATC-TCATATTTTCTACATGCCAATG-CATT
567 ATCGATAAGGTGGTAGGTG-GGT-T-TAG-GCACATCTTCATATTTT-TACATGCCAATGCCATT
* *
18172832 TTTAATGGCTTCTAAATTCATACTAAATGGTCCC-TAAACCTTCACGTGAAGTGTTCATGGCAAA
627 TTT-ATGGCTTGTAAATTCATAC--AATGGTCCCTTAAGCCTTCACGTGAAGT-TTCATGGC-AA
* * * * * ** **
18172896 GACAACTCATTTTCTGTTTTTTATAAACGATTTGAAACTTTTTTTGGTTCGAGAATATTTTT-AA
687 GACGACTCGTTTTCTATTTTTCA-CAA-TTTTTGAAACTTTTTACGGTTCGAGAAT-TTTTTAAA
* * *
18172960 ATTTTTTCGGAAGGGGTTTTGGCTCCCTAAACTTCGTAAACAGTGATCCTTGTATTTTTGTTGGC
749 ATTTTTTCGGAAGGAGTTTTGGC-CCC-AAACTTGGTAGAC-GTGATCCTTGTATTTTTGTTGGC
* **
18173025 ATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCG
811 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATG
* * * *
18173090 TCCCCATTTTAGACAGTTTAGTG
876 TCCCCATTTCAAACACTTTAATG
* * *
18173113 GCTACTGGCAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCGAGGTTTG
1 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * *
18173178 ATGAGGGATAGGGGGCCAATATAAGGGCTAAGTGCCAGCACCCATCGCACATCATGTGTGCACAC
66 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
** * *
18173243 CCCCC-GCCCCCCGATCGTTGGAACCCTAATGCCACCTGGTCAGGTTCTCCGGCGATGCTCCGAT
131 CCCCCGGCCCCCCGATCGTCAGAACCCTAATGCCGCC-GGTCAGGTTCTCCGACGATGCTCCGAT
* * *
18173307 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCCGTA
195 GATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
*
18173372 ACCCTCGGTCTGATCCGATCCTAGACTGGGAATGAACTCCGTATGC
260 ACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
18173418 CTAAGCCAAC
Statistics
Matches: 2468, Mismatches: 341, Indels: 275
0.80 0.11 0.09
Matches are distributed among these distances:
836 11 0.00
837 2 0.00
838 2 0.00
839 19 0.01
840 33 0.01
841 33 0.01
842 22 0.01
843 48 0.02
844 20 0.01
845 50 0.02
846 51 0.02
847 48 0.02
848 26 0.01
849 62 0.03
850 12 0.00
851 7 0.00
852 41 0.02
853 28 0.01
854 6 0.00
855 7 0.00
856 3 0.00
857 33 0.01
858 18 0.01
859 11 0.00
860 7 0.00
861 2 0.00
862 3 0.00
863 10 0.00
864 3 0.00
865 11 0.00
866 9 0.00
867 12 0.00
868 10 0.00
869 4 0.00
870 6 0.00
872 7 0.00
873 18 0.01
874 20 0.01
875 7 0.00
877 7 0.00
878 4 0.00
879 10 0.00
880 17 0.01
881 1 0.00
882 14 0.01
883 2 0.00
885 182 0.07
886 236 0.10
887 3 0.00
888 9 0.00
889 241 0.10
890 115 0.05
891 1 0.00
897 465 0.19
898 217 0.09
899 9 0.00
900 22 0.01
901 57 0.02
902 67 0.03
903 20 0.01
904 28 0.01
905 7 0.00
906 12 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
CCCCCGGCCCCCCGATCGTCAGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATG
ATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
CCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCTGCCAGAGGAGCAGGATGCG
CAAGCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCG
GTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGC
GGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAAGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTTTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTT
TTGAAACTTTTTACGGTTCGAGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATG
Found at i:18173807 original size:712 final size:717
Alignment explanation
Indices: 18172799--18174129 Score: 1931
Period size: 712 Copynumber: 1.9 Consensus size: 717
18172789 GTTCTGTAGA
*
18172799 GCACATCTCATATTTTCTACATGCCAATGCATTTTTAATGGCTTCTAAATTCATACTAAATGGTC
1 GCACATCTCATATTTTCTACATGCCAATCCATTTTTAATGGCTTCTAAATTCATAC-AAATGGTC
* * *
18172864 CCTAAACCTTCACGTGAAGTGTTCATGGCAAAGACAACTCATTTTCTGTTTTTTATAAACGATTT
65 CCTAAACCTTCACGTGAAGTGTTCATAGCAAAGACAACTCATTTTCTATTTTTCAT--A-GATTT
* ** * *
18172929 GAAACTTTTTTTGGTTCGAGAATATTTTTAAATTTTTTCGGAAGGGGTTTTGGCTCCCTAAACTT
127 AAAACTTTTTACGGTTCGAGAATATTTTTAAATTTTTTCGGAAGGGATTTTGGCTCCCCAAACTT
*
18172994 CGTAAACAGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTG
192 CGTAAACAGTGATCCTTGTATTTTTGTTGACATGCACAAAAACATTCAGCTAAAAACTCGAAGTG
* * * *
18173059 TACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTTAGACAGTTTAGTGGCTACTGGCAA
257 TACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATGTCAGACACTTTAATGGCTACTGGCAA
18173124 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCGAGGTTTGATGAGGGATAG
322 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCGAGGTTTGATGAGGGATAG
* * *
18173189 GGGGCCAATATAAGGGCTAAGTGCCAGCACCCATCGCACATCATGTGTGCACACCCCCCG-CCCC
387 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCGACCCC
*
18173253 CCGATCGTTGGAACC-CTAATGCCACCTGGTCAGGTTCTCCGGCGATGCTCC-GATGATGGTGCC
451 CCGATCGTTGGAACCTC-AATGCCACC-GGTCAAGTTCTCCGGCGATGCTCCAGA-GATGGTGCC
* ** *
18173316 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCCGTAACCCTCGGT
513 CCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTACTGCCGCAACCCTCGGT
*
18173381 CT-GATCCGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAC
578 CTAG-TCCGATCCTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAC
18173445 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATACGCGAGCCATGTATCGGTAGGGTGGTA
642 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATACGCGAGCCATGTATCGGTAGGGTGGTA
18173510 GGTGGGTTTAG
707 GGTGGGTTTAG
* *
18173521 GCACATCATCATA-TTTCTACGTGCCAATTCCATTTTT-ATGGCTTGTAAATTCATAC-AATGGT
1 GCACATC-TCATATTTTCTACATGCCAA-TCCATTTTTAATGGCTTCTAAATTCATACAAATGGT
* * * *
18173583 CCCTTAAGCGTTCACGTGAAGT-TTTATAGC-AAGACGACTCATTTTCTATTTTTCAT-GATTTT
64 CCC-TAAACCTTCACGTGAAGTGTTCATAGCAAAGACAACTCATTTTCTATTTTTCATAGA-TTT
* *
18173645 CAAAACTTTTTACGGTTCG-GGAT-TTTTTAAAAATTTTTT-GGAA-GGATTTT-TCTCCCCAAA
127 -AAAACTTTTTACGGTTCGAGAATATTTTT--AAATTTTTTCGGAAGGGATTTTGGCTCCCCAAA
* *
18173705 CTTGGTAGAC-GTGATCCTTGTATTTTTGTTGACATGCACAAAAACATTCAGCT-AAAACTCGAA
189 CTTCGTAAACAGTGATCCTTGTATTTTTGTTGACATGCACAAAAACATTCAGCTAAAAACTCGAA
* * *
18173768 GTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATGTCAGACACTTTAATGGCTATTGG
254 GTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATGTCAGACACTTTAATGGCTACTGG
* * * * *
18173833 CAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGCGGGA
319 CAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCGAGGTTTGATGAGGGA
*
18173898 TAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGACC
384 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGA-C
* **
18173963 CCCCCGATCGTTGGTACCTCAATGCCGTCGGTCAAGTTCTCCGGCGATGCTCCAGAGATGGTGCC
448 CCCCCGATCGTTGGAACCTCAATGCCACCGGTCAAGTTCTCCGGCGATGCTCCAGAGATGGTGCC
* *
18174028 CCGACGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGTATGTACTGCCGCAACCCTCGGT
513 CCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTACTGCCGCAACCCTCGGT
** * *
18174093 CTAGTTTGATCTTAGACTAGGAATGAACTCTGTATGC
578 CTAGTCCGATCCTAGACTAGGAATGAACTCCGTATGC
18174130 TTAGACTGGG
Statistics
Matches: 546, Mismatches: 51, Indels: 34
0.87 0.08 0.05
Matches are distributed among these distances:
711 6 0.01
712 301 0.55
713 70 0.13
714 17 0.03
715 13 0.02
716 10 0.02
717 24 0.04
719 23 0.04
720 15 0.03
721 16 0.03
722 38 0.07
723 13 0.02
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.28
Consensus pattern (717 bp):
GCACATCTCATATTTTCTACATGCCAATCCATTTTTAATGGCTTCTAAATTCATACAAATGGTCC
CTAAACCTTCACGTGAAGTGTTCATAGCAAAGACAACTCATTTTCTATTTTTCATAGATTTAAAA
CTTTTTACGGTTCGAGAATATTTTTAAATTTTTTCGGAAGGGATTTTGGCTCCCCAAACTTCGTA
AACAGTGATCCTTGTATTTTTGTTGACATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGCGTCCCCATGTCAGACACTTTAATGGCTACTGGCAACAAA
CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGACCCCCCGAT
CGTTGGAACCTCAATGCCACCGGTCAAGTTCTCCGGCGATGCTCCAGAGATGGTGCCCCGACGAA
GAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTACTGCCGCAACCCTCGGTCTAGTCCG
ATCCTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCG
GGCACTACGTCGGCCAGAGAGACGGGATACGCGAGCCATGTATCGGTAGGGTGGTAGGTGGGTTT
AG
Found at i:18174141 original size:26 final size:26
Alignment explanation
Indices: 18174103--18174155 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18174093 CTAGTTTGAT
*
18174103 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18174129 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18174155 C
1 C
18174156 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18175061 original size:26 final size:26
Alignment explanation
Indices: 18175009--18175061 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18174999 CTTGTCCGAT
* *
18175009 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
18175035 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
18175061 C
1 C
18175062 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:18175196 original size:906 final size:902
Alignment explanation
Indices: 18173393--18177422 Score: 5418
Period size: 906 Copynumber: 4.5 Consensus size: 902
18173383 GATCCGATCC
*
18173393 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--GAGC-GGACGGGCGGGCGG
1 TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGAGCGGGACGGGCGGGCGG
* * * * *
18173455 GCACTACGTCGGCCAGAGAGACGGGATACGCGAGCCATGTATCGGTAGGGTGGTAGGTGGGTTTA
66 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * *
18173520 GGCACATCATCATATTTCTACGTGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
131 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
18173585 CTTAAGCGTTCACGTGAAGTTTTATAGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAA
196 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
* **
18173650 CTTTTTACGGTTCGGGATTTTTTAAAAATTTTTT-GGAAGGATTTTTCTCCCCAAACTTGGTAGA
261 CTTTTTACGGTTCGGGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
18173714 CGTGATCCTTGTATTTTTGTTGACATGCACAAAAACATTCAGCT-AAAACTCGAAGTTTACAAGA
325 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
18173778 TTTTGTGACCATTTGAAAAAAGTGTCCCCATGTCAGACACTTTAATGGCTATTGGCAGCAAACCT
390 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * *
18173843 GTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGCGGGATAGGGTGCCA
455 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGACA
*
18173908 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCGACCCCCCCGATC
520 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
** * * * *
18173972 GTTGGTA-CCTCAATGCCGTCGGTCAAGTTCTCCGGCGATGCTCCAGAGATGGTGCCCCGACGAA
585 GCCGGAACCCT-AATGCCGCCGGTCAAGTTCTCCGACGATGCTCCGGAGATGGTGCCCCGACGAA
* * * * **
18174036 GAAAAATGCGACACCAGCACATGCTCGAGCCCAGTATGTACTGCCGCAACCCTCGGTCTAGTTTG
649 GAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCG
*
18174101 ATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
714 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * *
18174166 CCACGAAATGAGCGTGCGGGCGCTCAGCC-GACCAGAGGGGTGGGATGCATAAGCCGAGGATCGG
779 CCACGAAACGAGCGTGCGGGCGCTCAGCCAG-CCAGAGGGGCGGGATGCACAAGCCGGGGATCGG
* ** * * ** * *
18174230 CTGAGTCCCCCTCTATGTGCTACCGATCCTGCTGCAGCAACCCTTGGTCTGGTCCAATCT
843 CCGAGTCCCCCTCTGCGTGCTACCGATCCTGCTACTGCAACCCTCAGTCCGGTCTAATCT
*
18174290 TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAATGGGCGGGCGAACGGGCG
1 TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AA-GAGC-GG-G-ACGGGCG
* * * *
18174355 GGCGGGCACTACGTCGGCTAGAGAGACGGGATGTGCAAGTCGTGGATCGATAGGGTGATAGGTGG
61 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
18174420 GTTTAGTCACATCTTCATATTTGTGCATGCCAATGCCATTTTTATGGCTTGTAAATGCATACAAT
126 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
18174485 GGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAGTTTTCATGATTTT
191 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * * *
18174550 CAAAATTTTTTACTGTCCGGGATTTTTTAAAATTTTTTCGGAAGG-GTTTTTGGTCCCAAACTTG
256 CAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG-TTTTGGCCCCAAACTTG
* * *
18174614 GTAGACGTGATCCTCGTATTTTTTTTGGAATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
320 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
18174679 CAAGATATTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCA
385 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
18174744 AACCTGTAAAATCTCAAACGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-GGG
450 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
18174808 GGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCC
515 GGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * * *
18174873 CGATCGCCAGAACCCTAATGCCGCCGGTCAAGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGG
580 CGATCGCCGGAACCCTAATGCCGCCGGTCAAGTTCTCCGACGATGCTCCGGAGATGGTGCCCCGA
* * * * * * *
18174938 GGAAGAAAAATGCGATACCGGCACATGCTCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTTG
645 CGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
* *
18175003 TCCGATCTTAGACTGGGAATGAACT-TCGTATGCTTAGACTGGGAATGAACTCCGCATGCGTAAG
710 TCCGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
18175067 TCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCAGCCGGAGGGGCAGGATGCACAAGCTGGGGA
774 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCACAAGCCGGGGA
* * * * *
18175132 TCAGCCGGGTCCCCTTCTGCGTGCTGCCAATCCTGCTACTGCAACCCTCAGTCCGGT-TCAATCT
839 TCGGCCGAGTCCCCCTCTGCGTGCTACCGATCCTGCTACTGCAACCCTCAGTCCGGTCT-AATCT
* * * * ** * *
18175196 TAGA-TTGAGAATGAACTCCGTATGCCTAAGCAAACAGATGAAATGAGCAG-GTGGATGAGCGGG
1 TAGACTAG-GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAG-AGCG-GGACGGGCGGG
* * * *
18175259 CGGGCACTGCGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGG-GATAGGTGGAT
63 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
18175323 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATGCATACAATGG
128 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* ** *
18175388 TCCCTTAAGCCTTCACG-GAAAGTTTCATAGCAAGACGACTCGTTTTCTATTTTTCACAATTTTT
193 TCCCTTAAGCCTTCACGTG-AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
* * *
18175452 GAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
257 AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
18175517 AGACGTGATCCTTGTATTTTTGTTCGCATGCAC-AAAAAAGTCAGCTAAAAACTCGAAGTGTACA
322 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
18175581 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTATAATGGCTACTGGCAGCAAA
387 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
18175646 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
452 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
18175711 ACAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGG-CCCCCC
517 ACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCC
* ** * * * * *
18175775 AATAACCGGAACCCTAATGCCGCCGGTCAGGTTCTCTGACAATGCTCCGGAGATGGTGCCACTAC
581 GATCGCCGGAACCCTAATGCCGCCGGTCAAGTTCTCCGACGATGCTCCGGAGATGGTGCCCCGAC
* * * *
18175840 GAAGAAAAATGCGACACCAGCACATGCCCTAGCCCAACATGTGCTGCCGC-ACCGTCGGTCCGGT
646 GAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
* *
18175904 CCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTT
711 CCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* ** * * * * *
18175969 AACTCATAAAACGAGCGTGCGGGTGGTCAGTCGGCCAGAGGGGTGGGATGCACAAGCCGGGGATC
776 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCACAAGCCGGGGATC
** * * *
18176034 GATCGAGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCT-CAACCCTTAGTCCGGTCTGATCT
841 GGCCGAGTCCCCCTCTGCGTGCTACCGATCCTGCT-ACTGCAACCCTCAGTCCGGTCTAATCT
* *
18176096 TAGACTACGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--GAACGGG-CGGGCGGGCGG
1 TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGAGCGGGACGGGCGGGCGG
* * * * *
18176158 GCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGAATCGATAGGATGGTAGGTTGGTTTA
66 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* **
18176223 GGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
131 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
18176288 CTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
196 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
** * *
18176353 CTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCTAAACTTGGTAGAC
261 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
18176418 GTGATCCTTTTATTTTTTTTGGCATCCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGAT
326 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
18176483 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGACAGCAAACCTG
391 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
** * * *
18176548 TAAAATCTCAAATGCTCTACAAGGGGGTGTGAGTTCTCAAGGTTTGATGGGGGATAGGGGGCCAA
456 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGACAA
* * ** * *
18176613 TATAGGGGCCAAGTACCAGCACCGATCGCACATCATGTGTACACACCCCCCCGACCCCCCGATCG
521 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
* * * *
18176678 ACGGAACCCCAAT---GCC-GTC-AG-T-T---A-GGTTCTCC-GACGATGGTGCCCCGACGAAG
586 CCGGAACCCTAATGCCGCCGGTCAAGTTCTCCGACGATGCTCCGGA-GATGGTGCCCCGACGAAG
* ** * ** *
18176731 AAAAATGCGGCACCAGCACATGCCCGAGCGTAGCATGTGCTGTCGCAACCCTCAAT-TCGGTTCG
650 AAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-GGTCCG
* * *
18176795 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
714 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * ** * *
18176860 CCATGAAACGAGCGTACGGGCGTTCAACCAGCCATAGGGGCGGGATGCGTAAGTCGGGGATCGGT
779 CCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGC
* * * * * * ** *
18176925 CGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTACCGTAACCCTCGGTATGGTCTGATCT
844 CGAGTCCCCCTCTGCGTGCTACCGATCCTGCTACTGCAACCCTCAGTCCGGTCTAATCT
* * * * * * * *
18176984 TAGACTGGGAATGAACTACGTATGCCTAAGCTAACCGACGAAACGAGCGGGCGGACGGGCAGGCA
1 TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGAGCG-GGACGGGCGGGCG
* * * ** * * *
18177049 GGTACTACGCCAGCCAGAGAGACAAGATGCACAAGTCGTAGATCGATAGGGTGGTAGGTGGGTTT
65 GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
18177114 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCATT-TAAATTCATACAATGGT
130 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC-TTGTAAATTCATACAATGGT
* * * **
18177178 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACCCGTTTTCTATTTTTCACGATTTTTGA
194 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAA
* * *
18177243 AACTTTTTGCGGTTCGGGATTTTTT-TAATTTCTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
259 AACTTTTTACGGTTCGGGATTTTTTAAAATTT-TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
18177307 GAAGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTGAAAACTCGAAGTGTACAA
323 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
18177372 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGC
388 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
18177423 CCCGACCCCT
Statistics
Matches: 2758, Mismatches: 333, Indels: 89
0.87 0.10 0.03
Matches are distributed among these distances:
886 2 0.00
887 62 0.02
888 210 0.08
890 2 0.00
891 8 0.00
892 341 0.12
893 3 0.00
894 3 0.00
895 3 0.00
896 53 0.02
897 266 0.10
898 217 0.08
900 355 0.13
901 376 0.14
902 63 0.02
903 3 0.00
904 13 0.00
905 326 0.12
906 448 0.16
907 4 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (902 bp):
TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGAGCGGGACGGGCGGGCGG
GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGACAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
CCGGAACCCTAATGCCGCCGGTCAAGTTCTCCGACGATGCTCCGGAGATGGTGCCCCGACGAAGA
AAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGAT
CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCG
AGTCCCCCTCTGCGTGCTACCGATCCTGCTACTGCAACCCTCAGTCCGGTCTAATCT
Found at i:18175960 original size:26 final size:26
Alignment explanation
Indices: 18175909--18175961 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18175899 CCGGTCCGAT
**
18175909 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18175935 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18175961 C
1 C
18175962 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18176835 original size:26 final size:26
Alignment explanation
Indices: 18176797--18176849 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18176787 TCGGTTCGAT
* *
18176797 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18176823 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18176849 C
1 C
18176850 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18177606 original size:26 final size:26
Alignment explanation
Indices: 18177570--18177622 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18177560 CCGATCCGAT
* * *
18177570 CTTAGGCTGGGAATGATCTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18177596 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18177622 C
1 C
18177623 GTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18178486 original size:26 final size:26
Alignment explanation
Indices: 18178457--18178509 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18178447 CTGATCCGAT
18178457 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18178483 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18178509 C
1 C
18178510 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18179393 original size:26 final size:26
Alignment explanation
Indices: 18179357--18179409 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18179347 CTGGTCTGAT
18179357 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18179383 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18179409 C
1 C
18179410 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18179555 original size:900 final size:896
Alignment explanation
Indices: 18177422--18181183 Score: 5066
Period size: 903 Copynumber: 4.2 Consensus size: 896
18177412 ACTTTAGTGG
* * * * * *
18177422 CCCCGACCCCTCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTTCGATATTGCTCCGGCA
1 CCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCGGCG
* *
18177487 ATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGC-CTGAGCCCAGCATGTGCTTTCGTA
65 ATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCTC-GAGCCCAGCATGTGCTGTCGCA
* * * * * *
18177551 ACCCTTGGTCCGATCCGATCTTAGGCTGGGAATGATCTTCGTATGCTTAGACTGGGAATGAACTC
129 ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * *
18177616 CGTATGCGTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGGCCAGAGGGGCGAGATGC
194 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * *
18177681 GCAAGTCGGGGATCGGTCGGGT-CCCGTCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCAGTC
259 GCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTC
* * ** * *
18177745 TGGTCCAATCTGAGACTAGGAATGAACTCCGTAAACCTAAGCTAACCGACG-AA--A-CGTGCGG
324 TGGTCTAATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* * * * * * *
18177806 GTGGGTGGGCATTACGCCGGCCAGAGAGACGAGATACGCAAGCTGTGGATCGATACGGTGGTAGG
389 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * * * *
18177871 TGGGTATACGCACATCTTCATATTTCTGCATGCCAATACAATTTTTATGTCTTGTAAATTCATGC
454 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
18177936 AATTGTCCCTCAAGCCTTCACGTTAAGTTTCATGGCAAGTCGACTCGTTTTCTATTTTTCACGAT
519 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* ** * *
18178001 TTTCAAAACTTTTTACAGTTTTGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACT
584 TTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GAAGGATTTTTGGCCCCAAACT
* * * * *
18178066 TGTTAGACGTAATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAATGTGAAGTG
648 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA-CTCAAGTG
* *
18178131 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAG
712 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
18178196 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTTGAGGTTTGATGAGGGATAG
777 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * * *
18178261 GGGGCCAAAATAAGGGCCAATTACCAGCACCTATCGCACATCATGTGTGCACA-C
842 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC
* * * * * **
18178315 CCCC-G----CCGATCGTCGGAACCCTAATGCCGTCAGTCAGGTTCTCCGGCAATGCTCCGATGA
1 CCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCGGCGA
* * * *
18178375 TGGTGCCCCGATGAAGAAAAATGCGACACCATCACATGCCCGAGCCCAGCTTGT-CTTGTCGCAA
66 TGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGC-TGTCGCAA
* *
18178439 CCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCC
130 CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * *
18178504 GTATGCCTAAGTCAACCCACGAAACGGGCGTGCAGGCGCTTAGTCAGCCAGAGGGGCGGGTTGCG
195 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* ** * * * * * * * * *
18178569 CCATTCGGGGATCGGTCGGGTCCCCCTTTACGCGCTGTCGATCCTGCCACCGCAACTCTC-GATT
260 CAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAG-TC
* * *
18178633 TGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGCGGGCGG
324 TGGTCTAATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* * * *
18178698 GCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGGCATGGATCGATAGGGTGGTAGG
389 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
18178763 TGGGTTTAGGCACATCCTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATGC
454 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
18178828 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
519 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * * * * *
18178893 TTTTGAAACTTTTTACGGTTTGTGATTTTTTCAAATATTTTCGATAGGATTTTTGGCCCTAAACT
584 TTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AGGATTTTTGGCCCCAAACT
*
18178958 TGGTAGACGTGATGCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCACAGT
648 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCA-AGT
* *
18179023 GTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTAAGACACTTTAATGGCTACTGGCA
711 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
18179088 GCAAACTTGCAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
776 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
18179153 GGGGGCCAATATAAGTGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC
841 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC
* * * * *
18179209 CCCCGGCCCTGCCGATCACCGGAACCCCAATGTCGTCGGTCAGGTTCTCTGACAATGCTCCGGCG
1 CCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCGGCG
** * *
18179274 ATGGTGCCCCGATGAAGAAAAATAAGGCACCAGCACATGATCGAGCCCAGCTTGTGCTGTCGCAA
65 ATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGCAA
*
18179339 CCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
130 CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* *
18179404 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGGGATGCG
195 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * * * * * ** *
18179469 AAAGCCAAAGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCTTACTGCCATAACCCTCAGTCC
260 CAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCT
* * *
18179534 AGTCTGATCTGAGTCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
325 GGTCTAATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * * * *
18179599 CGGGTGGGCGGGCACTATGCCGGCCAAAGAGACAGGATGTGCAAGCCGTGTATCGATAGGGTGGT
390 C----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* **
18179664 AGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
451 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
18179729 TACAATGGTCTCTTAAACCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAC
516 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* *
18179794 AATTTTCAAAACTTTCTGA-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCA
581 GATTTTCAAAACTTT-TTACGGTTCGGGATTTTTTAAAATTTTTTC-GAAGGATTTTTGGCCCCA
* * * * * *
18179858 AACATGGTAAACGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAAAAATCAACTAAAAACTTGA
644 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCA
* * * *
18179923 ACTGTACAAGCTTTTGTGACCATTTGAAAAAAGTGCCCCCCTTTCAGACACTTTAATGGCTACTG
708 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
18179988 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
773 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
*
18180053 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
838 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC
* * * * *
18180112 CCCTCGGCCCCCCGATTGTCGAAACCTCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCG
1 CCC-CGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCGGCG
* * *
18180177 ATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCACAA
65 ATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGCAA
** * *
18180242 CCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAGCTCCGTGTGCTTAGACTGGGAATGAA-TAC
130 CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-C
* * * * * *
18180306 CGTATGCCTAAGTCAAGCCACGAAACAAGCGTGCGGGTGCCCAACCGGCCAGAGGGGCGGGATGC
194 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * *
18180371 GCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGTTGCCGAT-CTGGCTGCCGTAACCCTCGGT
259 GCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCT-GCTACCGCAACCCTCAGT
* * * * *
18180435 CTGGTCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAACCGACGACACGAACGGGCG
323 CTGGTCTAATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* * ** *
18180500 GGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCATATGCCGTGGATCGATAGGGTGGTAG
388 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
18180565 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
453 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
18180630 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT-GCAAGACGACTCGTTTTTTATTTTTCATGA
518 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
** ** * *
18180694 TTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGG-TGTTTTCGCCCCAAA
583 TTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGAAGGAT-TTTTGGCCCCAAA
* *
18180758 CTTGGTAGATGTGATCCTTATATTTTTGTTGG-ATGCACAAAAAAATTCAGCTAAAAACTCGAAG
646 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-AAG
*
18180822 TGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
710 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
18180887 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGAT
775 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
18180952 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACTC
840 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAC-C
* * * *
18181010 CCCCGGCCCACCCGATTGCCGGAA-CCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCGGTG
1 CCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCGGCG
* ** * * **
18181074 ATGGTGCCCTGGCGAAGAAAAATACGGAACCAGCACATGCTCGAGCCCAGCATGTGCTG-CAAAA
65 ATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTC-GCA
* * **
18181138 ACCCTTGGTCTAGTTTGATCTTAGACTGGGAATGAACTCCGTATGC
129 ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
18181184 CTAAGCCAAC
Statistics
Matches: 2526, Mismatches: 306, Indels: 70
0.87 0.11 0.02
Matches are distributed among these distances:
886 1 0.00
887 234 0.09
888 76 0.03
889 2 0.00
891 2 0.00
892 267 0.11
893 194 0.08
894 5 0.00
895 1 0.00
896 2 0.00
897 345 0.14
898 117 0.05
899 152 0.06
900 324 0.13
901 2 0.00
902 2 0.00
903 530 0.21
904 266 0.11
905 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCGGCGA
TGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGCAAC
CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
TATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
AAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTG
GTCTAATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
TCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAGGATTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC
Found at i:18181848 original size:704 final size:709
Alignment explanation
Indices: 18180417--18181890 Score: 2193
Period size: 704 Copynumber: 2.1 Consensus size: 709
18180407 TGCCGATCTG
* * *
18180417 GCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAAC
1 GCTGCCGAAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
18180482 CGACGACACGAACGGGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCATATGCCGT
66 CGACGA-AC-AACGAGCGGGCGGGCGAGCAC-ACGCCGGCCAGAGAGACGGGAAGCATATGCCGT
* *
18180547 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
128 GGATCGATAGGGTGGTAGGAGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
18180612 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCAAGACGACTCG
193 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCAAGACGACTCG
* * * * * * *
18180677 TTTTTTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAG
258 TTTTCTATTTTCCATAATTTTCGAAACTTTTTGTGGTTCGAGATTTTTTAAAAATTTTTTGGAAC
* * * *
18180742 GTGTTTTCGCCCCAAACTTGGTAGATGTGATCCTTATATTTTTGTTGGATGCACAAAAAAATTCA
323 GAGTTTTCGACCCAAACTTAGTAGACGTGATCCTTATATTTTTGTTGGATGCACAAAAAAATTCA
18180807 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACT
388 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
18180872 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGA
453 TTAATGGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGA
18180937 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
518 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
* ** *
18181002 GCACACTCCCCCGGCCCACCCGATTGCCGGAACCCAATGCCGCCGATCAGGTTCTCCGACGATGC
583 GCACACCCCCCCGGCCCACCCGATCACCGGAACCCAATGCCGCCGATCAGGTTCTCAGACGATGC
** * *
18181067 TCCGGTGATGGTGCCCTGGCGAAGAAAAATACGGAACCAGCACATGCTCGAGCCCAGCATGT
648 TCCGACGATGGTGCCCCGGCGAAAAAAAATACGGAACCAGCACATGCTCGAGCCCAGCATGT
** * *
18181129 GCTGCAAAAACCCTTGGTCTAGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
1 GCTGCCGAAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
*
18181194 CGACG-A-AACGAGCGGGCGGG-GA-CA-ATGCCGGCCAGAGAGACGGGTTAAGCA-A-GCCGTG
66 CGACGAACAACGAGCGGGCGGGCGAGCACACGCCGGCCAGAGAGACGGG--AAGCATATGCCGTG
* *
18181252 GATTGATAGGGTGGTAGGAGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
129 GATCGATAGGGTGGTAGGAGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
*
18181317 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGGAGTTTCATGGCAAGACGACTCG
194 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT-GCAAGACGACTCG
18181382 TTTTCTATTTTCCATAATTTTCGAAACTTTTTGCT-GTTCGAGA-TTTTTAAAAATTTTTTGGAA
258 TTTTCTATTTTCCATAATTTTCGAAACTTTTTG-TGGTTCGAGATTTTTTAAAAATTTTTTGGAA
* * * *
18181445 CGAGTTTTGGATCCAAACTTAGTAGGCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACAA-
322 CGAGTTTTCGACCCAAACTTAGTAGACGTGATCCTTATATTTTTGTTGG-ATGCACAAAAA-AAT
* * * *
18181509 TCAGCTACAAACTCGATGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
385 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGAC
*
18181574 ACTTTAATGGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
450 ACTTTAATGGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCT
* * *
18181639 TGAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
515 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATG
* * ** * *
18181704 TGTGCACACCCCCCCGG-CC-CCCTATCACCGGAACCCCAATGCCGTTGGTCAGGTTCTTCAG-T
580 TGCGCACACCCCCCCGGCCCACCCGATCACCGGAA-CCCAATGCCGCCGATCAGGTTC-TCAGAC
* *
18181766 GATGCTCCGACGATGGTGCCCCGGTGAAAAAAAATACGGCACCAGCACATGC-CAGAGCCCAGCA
643 GATGCTCCGACGATGGTGCCCCGGCGAAAAAAAATACGGAACCAGCACATGCTC-GAGCCCAGCA
18181830 TGT
707 TGT
* * * *
18181833 GCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTA
1 GCTGCCGAAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
18181891 GGTCAACCCA
Statistics
Matches: 688, Mismatches: 65, Indels: 26
0.88 0.08 0.03
Matches are distributed among these distances:
703 12 0.02
704 324 0.47
705 264 0.38
706 9 0.01
707 2 0.00
708 13 0.02
710 1 0.00
712 63 0.09
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (709 bp):
GCTGCCGAAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAACAACGAGCGGGCGGGCGAGCACACGCCGGCCAGAGAGACGGGAAGCATATGCCGTGGA
TCGATAGGGTGGTAGGAGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCAAGACGACTCGTTT
TCTATTTTCCATAATTTTCGAAACTTTTTGTGGTTCGAGATTTTTTAAAAATTTTTTGGAACGAG
TTTTCGACCCAAACTTAGTAGACGTGATCCTTATATTTTTGTTGGATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
CACCCCCCCGGCCCACCCGATCACCGGAACCCAATGCCGCCGATCAGGTTCTCAGACGATGCTCC
GACGATGGTGCCCCGGCGAAAAAAAATACGGAACCAGCACATGCTCGAGCCCAGCATGT
Found at i:18183619 original size:26 final size:26
Alignment explanation
Indices: 18183590--18183642 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18183580 CTGATCCGAT
*
18183590 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
18183616 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
18183642 C
1 C
18183643 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:18185607 original size:26 final size:26
Alignment explanation
Indices: 18185568--18185619 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18185558 CTGGTCCGAT
*
18185568 CTTAGACTATGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
18185594 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18185620 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18187155 original size:26 final size:26
Alignment explanation
Indices: 18187126--18187178 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18187116 CCGATCCGAT
*
18187126 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18187152 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18187178 C
1 C
18187179 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18188059 original size:26 final size:26
Alignment explanation
Indices: 18188030--18188084 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
18188020 AATCCGATAT
18188030 TAGACGGGGAATGAACTCCGTATGCC
1 TAGACGGGGAATGAACTCCGTATGCC
*
18188056 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACGGGGAATGAACTCCGTATGCC
18188082 TAG
1 TAG
18188085 GTCAACCCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (26 bp):
TAGACGGGGAATGAACTCCGTATGCC
Found at i:18188937 original size:25 final size:26
Alignment explanation
Indices: 18188909--18188960 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18188899 CCGAATCGAT
18188909 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18188934 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18188960 C
1 C
18188961 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18189474 original size:888 final size:886
Alignment explanation
Indices: 18186270--18189712 Score: 4590
Period size: 888 Copynumber: 3.9 Consensus size: 886
18186260 TCAGTCCAAT
* * * * * *
18186270 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCATATGGGCGTTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* ** * * * *
18186335 CGACCAGAGGGGTTGGATGCACAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGC-GAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
18186400 TACTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTATGCCAA
130 TACTGCCGCAACCCTAGGTCCGGTCAGATCTTAGACTGGCAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * * * *
18186465 TCGATGAAAC--G-AG-CGGGCGCGCGGGCACTGCGTCGGCTAGAGAGACGGGATGTGCGACCCG
195 CCGACGAAACAAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * **
18186526 TGGATCGATAGGGTGGTTGGTGGGTTTAGGCAAATCTTCATATTTCTGTGTGCCAATGCCATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
18186591 TATTGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * * * *
18186656 CGTTTTCTATTTTTTACAACTTTT-GAAACTTTTTGTGGTT-TGGGATTTTTTAAAA-TTTTTCG
390 CATTTTCTATTTTTCACGA-TTTTCAAAACTTTTTCTGGTTCT-AGATTTTTTAAAATTTTTTCA
* * * * * *
18186718 GAAGGA-ATTTTGTTCCCAAACTTGGTAGAGGTGATCCTTGTATTTTTGTTGGCATGCACAACAC
453 AAAGGAGTTTTTG-CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
18186782 AATTCAGCTAAAAACTC-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTC
517 AATTCAGCTAAAAAC-CAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* ** *
18186846 AGACAATTTAAT-GCTACTGGCAGCAAATTTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAG
581 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
18186910 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
646 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACAT
* * * * * *
18186975 CATGTGCACACACCCCCCCGACCCCCCGATCATCGGAACCCTAATGCCGCCGGTCAGGTTCTCTG
711 CATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* *
18187040 GCGATGGTGCCCTAGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCG
776 GCAATGGTGCCCCAGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCG
18187105 CAACCCTCGATCCG-ATCCGATCTTAGACTGGGAATGAACTCCGTATG
841 CAACCCTCG-TCCGAATCCGATCTTAGACT-GGAATGAACTCCGTATG
* * * * **
18187152 CTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGATGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * ** *
18187217 CGGCCAAAGGGGCGGGATGCGTAAGCTAGGGATCGATCAGGCCCCCCTCTGCGTGCTGTTGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCGA-GGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** *
18187282 TACTGCTGCAACCCTTGGTGCAATCCGATCTTAGACTAGG-AATGAACTCCGTATGCCTAAGCCA
130 TACTGCCGCAACCCTAGGTCCGGTCAGATCTTAGACT-GGCAATGAACTCCGTATGCCTAAGCCA
*
18187346 ACCGACGAAACGAGCGGGCAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
194 ACCGACGAAACAAGC-GG--A-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
18187411 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
18187476 ATTTTT-TAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCTAGA
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
18187540 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGC-GGTTC-AGGATTTTTTAAAATTT
385 CGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTT-CTGGTTCTA-GATTTTTTAAAATTT
** * * *
18187603 TTTTGAAAGGAGGTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCACA
448 TTTCAAAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* ** * *
18187668 AAAATATTCAGCTAAAAACTGGTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCAT
513 AAAAAATTCAGCTAAAAACCAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
18187733 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
578 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
18187798 GAGTTTTCGAGTTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCGTA
643 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTA
* * *
18187863 CATCATGTGCGCACACCCCCCTGGCCCCCCCGATCG-CCGAATCCCAATGTCGCCGGTCAGGTTC
708 CATCATGTGCGCACACCCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
*
18187927 TCCGGCAATGCTCCGACGATGGTGCCCCAGTGAAGAAAAATGTGGCACCAGCACATGCCTGAGCC
772 TCC-G----G---C-A--ATGGTGCCCCAGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCC
* * * * *
18187992 CAGCATGTGCTATCGTAACCCTCGGT-CTAATCCGATATTAGACGGGGAATGAACTCCGTATG
826 CAGCATGTGCTGTCGCAACCCTC-GTCCGAATCCGATCTTAGAC-TGGAATGAACTCCGTATG
* * *
18188054 CCTAGACTGGGAATGAACTCCGTATGCCTAGGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
** * * * *
18188119 TAGCCAGAGGGGAGGGATACGCAAGCCAGG---GA-----TCCCCCGCTGCGTGCTGCCGATCCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * **
18188176 GCTGCCGCAACCCCCA-GTCCGGTCCA-ATCTTAGACTGGCAATGAACTAAGTATGCCTAAGCCA
131 ACTGCCGCAA-CCCTAGGTCCGGT-CAGATCTTAGACTGGCAATGAACTCCGTATGCCTAAGCCA
* * * * * *
18188239 ATCGACGAAACGAGAGGGCGGGCGGGCGGGCAGGCACTACACCGACCAGAGAGACGGGATGCGTA
194 ACCGACGAAAC-A-A--GCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * * *
18188304 AGTCGTGGATCAATAGGGTGGTAGGTGGG--TAGGCACATGTCCATATTTCTACATGCCAACGCC
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
18188367 ATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGGAAGA
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
18188432 CGACTCATTTTCTATTTTTCAAGATTTTCAAAACTTTTTGTGGTTCGAGATTTTTGAAAATTTTT
385 CGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTCTGGTTCTAGATTTTTTAAAATTTTT
* * *
18188497 TCAAAAGGAGTTTTTACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCATAAA
450 TCAAAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
18188562 CAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
515 AAAATTCAGCTAAAAACCAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
18188627 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
580 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * *
18188692 GTTCTGGAGGTTTGATGGGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCGATCGTACT
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACA
* *
18188757 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTCC
710 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * *
18188822 GGCAATGGTGCCCCGGCGAAGAAAAATGCGACACCAGCACATGCCTGAGCCTAGTATGTGCTGCC
775 GGCAATGGTGCCCCAGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTC
18188887 GCAACCCTCAGTCCGAAT-CGATCTTAGACTGGAATGAACTCCGTATG
840 GCAACCCTC-GTCCGAATCCGATCTTAGACTGGAATGAACTCCGTATG
* * *
18188934 CTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * *
18188999 CGGCCATAGGGGCGGGATGCGCAAGTCGAGGATCGATGGGGTCCCCCTCTGCGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAG-CGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
18189064 TGCTGCCACAACCCTAGGTCCGGTCAGATCTTAGTCTGGCAATGAACTCCGTATGCCTAAGCCAA
130 TACTGCCGCAACCCTAGGTCCGGTCAGATCTTAGACTGGCAATGAACTCCGTATGCCTAAGCCAA
* * * *
18189129 CCGATGAAACAAGCGGACGGACGGGCGGACACTACGCCGGCCAGAGAGAAAGGGATGCGCAAGCC
195 CCGACGAAACAAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAG-ACGGGATGCGCAAGCC
* * **
18189194 GTGGATCGATAGGGTGGTAGTTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
18189259 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
** *
18189324 TCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACT-GTTCTAGATTTTTTAAAATTTTTCCA
389 TCATTTTCTATTTTTCACGATTTTCAAAACTTTTT-CTGGTTCTAGATTTTTTAAAATTTTTTCA
* * *
18189388 AAAGGAGTTTTTGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAA
453 AAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* **
18189453 AGTCAGCTAAAAACCAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCGACATTTCAG
518 ATTCAGCTAAAAACCAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
18189518 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
583 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
18189583 ATCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCA
648 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCA
* * * *
18189648 TGTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACTCCAATGCCGTCGGTCAGGTTCTTCGGC
713 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
18189713 GATGCTCCGG
Statistics
Matches: 2246, Mismatches: 255, Indels: 114
0.86 0.10 0.04
Matches are distributed among these distances:
880 96 0.04
881 77 0.03
882 169 0.08
883 3 0.00
884 4 0.00
885 30 0.01
886 37 0.02
887 2 0.00
888 464 0.21
889 184 0.08
890 228 0.10
891 208 0.09
892 409 0.18
893 142 0.06
894 4 0.00
895 1 0.00
896 3 0.00
897 2 0.00
898 2 0.00
899 1 0.00
901 3 0.00
902 176 0.08
903 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCT
ACTGCCGCAACCCTAGGTCCGGTCAGATCTTAGACTGGCAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACAAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
ATTTTCTATTTTTCACGATTTTCAAAACTTTTTCTGGTTCTAGATTTTTTAAAATTTTTTCAAAA
GGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACCAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGT
GCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCAAT
GGTGCCCCAGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACC
CTCGTCCGAATCCGATCTTAGACTGGAATGAACTCCGTATG
Found at i:18191231 original size:26 final size:26
Alignment explanation
Indices: 18191202--18191254 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18191192 CCGGTTCGAT
*
18191202 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
18191228 CTTAGATTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
18191254 C
1 C
18191255 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:18193920 original size:26 final size:26
Alignment explanation
Indices: 18193869--18193921 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18193859 CCAGTCCGAT
**
18193869 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18193895 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18193921 C
1 C
18193922 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18195346 original size:902 final size:903
Alignment explanation
Indices: 18192088--18200199 Score: 11026
Period size: 903 Copynumber: 9.0 Consensus size: 903
18192078 CCGATTCGAT
* * * **
18192088 CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGTGTACGGGCATTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
18192153 CGGCCATAGGGGTGGGATGCGCAAGTCGAGGATCGG-TCGGGTCCTCCTCTACGTGCTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTACCGATC
* * * ** * *
18192217 CTGTTGCTGTAACCCTC-AGTTTGGTCTGATCTTAGAGTGGGAATGAACTCCATATGCCTAAGCC
130 CTGCTGCCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
18192281 AACTGACGAACCAAGCGGGCTGGCGGGCGGGCAGGCACTACGTTGGCCAGAGAGACGGGATGCGC
194 AACCGACGAAACAAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * *
18192346 AAGCCGTGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATCTCTGTGTGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
*
18192411 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
** * *
18192476 ACGACTCG-TTTCTATTTTTCACGATTTTTGAAACTTTTTGTCGTTCGGAATATTTTAAAATTTT
389 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTT
*
18192540 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
18192605 AACAAATCTGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATT
519 AAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
18192670 TCAGACACTTTAATGTCTACTGGTAGCGAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
18192735 AGTTCTTGAAGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
18192799 ATCATGTGTGCACACCACCCCCGGCCCCCTCGATCGTCGGAACCCCAATG-TCGCCGGTCAGGTT
714 ATCATGTGCGCACA-C-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCT-GCCGGTCAGGTT
* * ** * * * * ** * *
18192863 CTCTGGCGATGCTCCGGCGATCATGCCCCGATGAAGAAAAATGTGCCATCAAAACATGCTCGATC
776 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
** * *
18192928 CCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCTA-TTTG
841 CCAGCATGTGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTC-AGTATG
* ** * * * *
18192991 CTTGGGTTGGGAATGAACTCCGTATGCCTAAGTCATCCCACAAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
18193056 CGGCCAGAAGGGCGGGATGCGCAAGTCGGAGATCGGCCTGGGTCCCCCTCTGCGTGTTGCCAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGG-CTGGGTCCCCCTCTGCGTGCTACCGATC
* * * * * * * *
18193121 CTGCTGCTGCAACACTCGGTCTGGCCTGATTTTAGACTAGGAATGAACTCCATATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * **
18193186 ACCGACGAAACGAGAGAGCAGGCGGGCGGGCGAGCACTACGCCAGCCAGAGAGATAGGATGCGCA
195 ACCGACGAAACAAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * *
18193251 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* * *
18193316 ATTTTTATGGCTTGTAAATTCATACAATGTTCCCTTAACCCTTCACGTGAAGTTTCATGGCATGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
18193381 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTTAGGTTCGGGATTTTTTAAAATTTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTTT
* ** * *
18193446 TTGGAAGGAGTTTTGTTCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACATA
455 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18193511 AAATATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
520 AAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
18193576 TAGACACTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
585 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
18193641 GTTCTTGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCGCAAGTACCAGTACCCATCGCAC
650 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC-CAAGTACCAGCACCCATCGCAC
** * * * * * * *
18193706 ATCATGTTTGCACA-CCCCCGACCCTCCTGACCTTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
714 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTC
* * * * *
18193770 CGGCGATGCTCCGACGTTGATGCCCTGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
779 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * *
18193835 GCATGTGCTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATG
844 GCATGTGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCAGTATG
* * * *
18193895 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTAAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
18193960 CGGCCAGAGGGGCGAGATACGTAAGCCGAGGATCGG-TCGGGTCCCCCTCTGTGTGCTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTACCGATC
* * * * * *
18194024 CTACTGTCGCAACCCTCAATCCGGTCTGATCTTAGACTGGCAATGAACTCCATATGCCTAAGCTA
130 CTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
18194089 ACCGACGAAACGAA-CGGGCGGGCAGGCGGGTGGGCACTACGCCGGCCAGAGAGACGAGATGCGC
195 ACCGACGAAAC-AAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * * * * *
18194153 AACCCGTGCATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATAC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* ** * *
18194218 CATTTCTACAGCTTGTAAATTCATATAATGGTGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
18194283 ACGACTCATTTTCTATTTTTCAGGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTT
389 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTT
* *
18194348 CTT-GGAAGGAGTTTTGGCCCCATACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
454 -TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * * *
18194412 AAAAAATTCAACTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCAT
518 AAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
18194477 TTC-GAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
583 TTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
18194541 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATTGC
647 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
18194606 ACATCATGTGCGCACACCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCTACCGGTCAGGTTC
712 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTC
* * * * *
18194671 TCCGGTGATACTCCGACGATCGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCC
777 TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
18194736 TAGCATGTGCTACCGCAACCCTTGGTCCAGTCCGATCTTAGATTGGGAATGAACTCAGTATG
842 CAGCATGTGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCAGTATG
* * * * * *
18194798 CTTAGATTGGGAATGAACTCCATATGTCTAAGTCCACCCATGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
18194863 CGGCCAGAGGGGCGGGATGCACAAGAC-GGGATCGGCTGGGTCCCCCTCTACGTGTTGCTGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCC
* **
18194927 TGCTGCCGCAACCCTCGGTCCACTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * **
18194992 CCGACGATACAAGCGGGAGGGCGGTCGGGCGGGCACTACGTCAACCAGAGAGACGGGATGC-CGA
196 CCGACGAAACAAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC-A
* * * *
18195056 AGCTGCGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
18195121 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* **
18195186 CGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCAAGATTTTTTAAAATTTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTTT
* **
18195251 TCAGAAGGTTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
455 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
18195316 AAAAATCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTT
520 AAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
18195381 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
585 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
18195446 GTTCTCGAGGTTTGATGAGGGATAGGTGGCCAATATAATGGCCAAGTACCAGCACCCATCACACA
650 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
** * * *
18195511 TCATGTGCG--CA-----C-TTCCCCCCGATCGTCGGAACCCCAATACCGCCAGTCAGGTTCTCC
715 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCC
* * ** *
18195568 GGTGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATTCCCGAGCCCAG
780 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
** * * * * * *
18195633 CATGTGCTGTCACAACCCTCGGTCCAATTCGATCTTAGACTGGGAATGAATTC-CTACG
845 CATGTGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCAGTATG
* * *
18195691 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * *** * *
18195756 CGGCCAGAAAGGCGGGATGCACAAGTCGGGGATTGACCAAGTCCCCCTCTGCATGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCC
* ** * *
18195821 TGCTACCGCAACCCTCGATCTAGTCT-AACTTAGACTGGGAATGAACTCCGTATGCCTAAGCGAA
131 TGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18195885 CCGACGAAACAA----GCGGGCAGGCGGGTGGGCACTATGTCGGCTAGAGAGACGGGATGCGCAA
196 CCGACGAAACAAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* **
18195946 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGATA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* * *
18196011 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTGATGGCAAGAT
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
18196076 GACTCGGTTTT-TATTTTTCATGATTTTGGAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTT
391 GACTC-GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGA-GGTTCGGGATTTTTTAAAATTTT
*
18196139 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAA
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
18196204 AGAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATT
519 AAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
18196269 TCAGACACTTTAATGGCTACTAGAAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *** * * *
18196334 AGTTCTCGAGGTTTGACGAGGGATAGGACACCAATATAAGGGCAAAGTACCAGCACCCATCACAT
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * * *
18196399 ATCATGAGCGTACACCCCCCAGCCCCCTCGATCGTCGAAACCCCAATGCCGCCAGTCAGGTTCTC
714 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTC
* * * * * *
18196464 CAGCGATGCTCTGGCGATGGTGCCCCGATGAAGAAATAA-GTGGCACCAGCACATGCCCGAGCCT
779 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA-AATGCGGCACCAGCACATGCCCGAGCCC
* *
18196528 AGCATGTGCTACCGCAACCCTTGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCA-TATG
843 AGCATGTGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACT-CAGTATG
* * ** *
18196589 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTTGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * *
18196654 TAGCTAGAGGGGTGGGATGCGTAAGTCGGGGATCGACTGGGT-CCCCTCTACGTGCTATCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCC
* * * *
18196718 TGTTGCCGCAACCCTCGATCTGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18196783 CCGACGAAACAAGCTGGCGGGCGGGCAGGCAGGCATTACGTCGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACAAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* *
18196848 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
*
18196913 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAA
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
18196978 GACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTTTT
* * * *
18197043 CAGAAGGAGTTTTGGCCCCAAACTTGGTAAACATGATCCTTGTATTTTTGTTGGCATGCACATAA
456 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
18197108 AATATCAGTTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
521 AAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
18197173 AGACACTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAG
586 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
18197238 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACAT
651 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
18197303 CATGTGCGCACACCCCCCGGCCCTCCTGACCGTCGGAAGCCCAATGCCGTCGGTCAGGTTCTCCG
716 CATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCG
* * * *
18197368 GCGATGCTCCGACGTTGATGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
781 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
18197433 ATATGCTGCCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCA-TATG
846 ATGTGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACT-CAGTATG
* *
18197491 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** *
18197556 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGG-TCGGGTCCTTCTCTGTGTGCTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTACCGATC
* ** * * * * *
18197620 CTACTATCACAACCCTCAATCCGGTTTGATCTTAGACTGGCAATGAACTCCGTATGCCTAAGCTA
130 CTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * *
18197685 ACCGATGAAACGAA-CGGGCGGGCGGACGGGTAGGCACTACTTCGGCCAGAGAGACGGCATGCGC
195 ACCGACGAAAC-AAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * *
18197749 AAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* ** * *
18197814 CATTTCTACAGCTTGTAAATTCATACAATGGTGCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
18197879 ACGACTTGTTTTCTATTTTTCAGGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTT
389 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTT
* * * * * * *
18197944 TTTGGAGGGAGTTTTTGCCGCATACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCCCAA
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
18198009 AAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
519 AAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
18198074 TC-GAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
584 TCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
18198138 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAACGGCCAAGTGCCAGCACCCATTGCA
648 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
18198203 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCTCAATGCTACCGGTCAGGTTCT
713 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCT
* * * * *
18198268 -CGGTGATACTCCGGCGATCGTGCCCC-ACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
778 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * * * *
18198331 AGCATGTGCTACTGTAACCCTTGGTCCCGTTCGATCTTAGATTGGGAATGAACTTAGTATG
843 AGCATGTGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCAGTATG
* * * *
18198392 CTTAGACTGGGAATGAACTCCGTATGTCTAAGTCAACCCATGAAACGAGTGTACGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-
* * *
18198457 CC-GCCAGAGGGGCGGGATGCACAAGACGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACTGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATC
* * * * * *
18198521 CTGCTGCCGCAACCCCCGATCCGATCCGATATTAGACTAGGAATGAACTCTGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** *
18198586 ACCGACGAAACGAA-CGGGCAGGTGGGCATGCGGGCATTACGTCGGCCAGAGAGACGGGATGCGC
195 ACCGACGAAAC-AAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * *
18198650 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTATATCTTCATATTTCTGCATGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* * *
18198715 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTCACCCTTCACGTGAAGTTTCATGGTAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
18198780 ACGACTCGTTTTCTACTTTTCACGATTTTTGAAACTTTTTGAGGTTCGAGATTTTTTAAAATTTT
389 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTT
* * *
18198845 TTCGGAATGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGTCATGCACAT
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
** **
18198910 AAAGTATCAGCTAAAAACTTAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
519 AAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
18198975 TCAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
18199040 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
18199105 ATCATGTCCGCACAACCCCTCCGGCCCCCCTGATCGTC-GAACCCTAATG-TCGTCGGTCAGGTT
714 ATCATGTGCGCAC-ACCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCT-GCCGGTCAGGTT
* * * ** * *
18199168 ATCAGGCGATGCTCCGACGTTGGTGCCCCGGTGAAGAAAAGTGCAGCACCAGCACATGCCCGAGC
776 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * *
18199233 CCAGCATGTGCTACCGCAACCCTCGGTCCAGTTCAATCTTAGACTGGGAATGAACTCCGTATG
841 CCAGCATGTGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCAGTATG
* * * * *
18199296 CTTAGACTGGGAATGAATTTCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGGGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * **
18199361 CGACCAGAGGGGCGGGATGCGCAAGCCAGGGATC-GATCGGGTCCCCCTCTACATGCTGTCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTACCGATC
* * * * *
18199425 CTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGCAATGAACTCCGTATGCCGAAGCTA
130 CTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
18199490 ACCGACGAAACGAA-CGTGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGTGATGCGC
195 ACCGACGAAAC-AAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * * * **
18199554 AAGCCGTGCATCGATAGGGTGGTAGGTTGGTTTAAGCACATCTTCATATTTTTATGTGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* *
18199619 CA-TTCTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * * *
18199683 ACGACTCATTTTTTATTTTTCAGGATTTTTGAAACTTTTTGTGGTTTGAGATTTTTTAAAATTTT
389 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTT
* * * * * *
18199748 TTCGGAATGATTTTTGGCGCCAAAATT-GTAGACGAGATCCTTGTATATTTTTTTGGCATGCACA
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACA
*
18199812 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
518 AAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
18199877 TTCAAACACTTTAATGGCTACTGGCAGCGAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTGT
583 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
18199942 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCGCCCATTGCA
648 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
18200007 CATCATGTGCGCACACCCCCCCGGCCCCCTCGATCGTCGGAACCGCAATGCTACCGGTCAGGTTC
713 CATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTC
* *
18200072 TCCGGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
777 TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * ** * *
18200137 TAGTATGTGCTACTGCAACTGTCGGTCC-GCTCTGATCTTAGACTGGGAATGAACTCCGTATG
842 CAGCATGTGCTACCGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCAGTATG
18200199 C
1 C
18200200 CTACGCCAAC
Statistics
Matches: 6337, Mismatches: 811, Indels: 122
0.87 0.11 0.02
Matches are distributed among these distances:
888 1 0.00
889 460 0.07
890 6 0.00
891 2 0.00
893 130 0.02
894 189 0.03
895 1 0.00
896 1 0.00
897 178 0.03
898 143 0.02
900 3 0.00
901 742 0.12
902 1380 0.22
903 1950 0.31
904 847 0.13
905 255 0.04
906 16 0.00
907 33 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCC
TGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACAAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTTTT
CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCG
GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
ATGTGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCAGTATG
Found at i:18196592 original size:26 final size:26
Alignment explanation
Indices: 18196563--18196615 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18196553 CCAGTCCAAT
*
18196563 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
18196589 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
18196615 C
1 C
18196616 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:18197494 original size:26 final size:26
Alignment explanation
Indices: 18197465--18197517 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18197455 CCAGTCTGAT
18197465 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18197491 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18197517 C
1 C
18197518 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18198416 original size:26 final size:26
Alignment explanation
Indices: 18198366--18198417 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18198356 CCCGTTCGAT
* *
18198366 CTTAGATTGGGAATGAACTTAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
18198392 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
18198418 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:18199306 original size:26 final size:26
Alignment explanation
Indices: 18199270--18199322 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18199260 CCAGTTCAAT
18199270 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18199296 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18199322 C
1 C
18199323 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18201813 original size:26 final size:26
Alignment explanation
Indices: 18201784--18201836 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18201774 CCGATCCAAT
18201784 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18201810 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18201836 C
1 C
18201837 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18202184 original size:892 final size:894
Alignment explanation
Indices: 18200173--18202708 Score: 3214
Period size: 892 Copynumber: 2.8 Consensus size: 894
18200163 CCGCTCTGAT
* * * * * *
18200173 CTTAGACTGGGAATGAACTCCGTATGCCTACGCCAACCGACGATACAAGCGGGAGGGCGGTCGGG
1 CTTAGACTGAGAATGAACTTCGTATGCCTAAGCCAACCGACGA-ACAAGCGAGCGGGC-GAC-GG
* * * ** * ** *
18200238 TGGGCATTACGTCAACCAGAGAGACGGGATGCGCAAGTTGCGGATCGATAGGGTGGTAGGTGGGT
63 CGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
18200303 TTAGGAACATCTTCATATTTCT-GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
128 TTAGGCACATCTTCATATTTCTAGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* **
18200367 GTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTT
193 GTCCCTTAAGCCTTCACGT--AGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGA-TTTT
* *
18200432 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAAAAAGAGTTTTGGCCCCAAACTTGGT
255 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCAAAACTTGGT
* * *
18200497 AGACGTGATGCTTGTATTTTTGTTGGCATGCAAAAAAAAAATCAACTAAAAACTCGAAGCGTACA
320 AGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATCAGCTAAAAACTCGAAGTGTACA
*
18200562 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
385 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAA
* * *
18200627 CCTGTAAAATCTCAAATGCTCTCTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTGGC
450 CCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGAGGC
* * * **
18200692 CAATATAATGGCCAAGTACCAGCACCCATCACACATCATGTGTG--CA-----CTTCCCCCCGAT
515 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCGAT
* * * **
18200750 CGTCGAAACTCTAATACCGTCAGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGGTGAA
580 CGTCGAAACCCCAATGCCGTCAGTCAGGTTCTCC-GTGATGCTCCGATGATGGTGCCCCGACGAA
* * * *
18200815 GAAAAATGCGGCACCAGCACATTCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCAATTCG
644 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCCG
* * * *
18200880 ATCTTAGATTGGGAATGAATTCC-TACGCCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
709 ATCTTAGACTGGGAATGAACTCCGTATGCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
18200944 CCATGAAACGAGAGTGTGGGCACTCAGCCGGCCAGAAGGGCGGGATGCACAAGTCGGGGATCGAC
774 CCACGAAACGAGAGTGTGGGCACTCAGCCAGCCAGAAGGGCGGGATGCACAAGCCGAGGATCGAC
** * * *
18201009 CAGGTCCCCCTCTGTGTGCTGCCGATCCTACTACCGCAACCCTCGGTGTAGTCTAA
839 CAGGTCCCCCTCTACGTGCTGCCGATCCTACTACCACAACCCTCGATCTAGTCTAA
* *
18201065 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGACGGG
1 CTTAGACTGAGAATGAACTTCGTATGCCTAAGCCAACCGACG-AACAAGCGAGCGGGC-GAC-GG
*
18201130 CGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
63 CGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* **
18201195 TTAGGCACATCTTCATATTTCTA-CGTGCCAATGATATTTTTATGGCTTGTAAATTCATACAATG
128 TTAGGCACATCTTCATATTTCTAGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * *
18201259 GTCCCTTAAGCCTTCACATGAAGTTTGATGGCAAGATGACTCATTTTTTATTTTTCATGATTTTG
193 GTCCCTTAAGCCTTCAC--GTAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTT-
* ** *
18201324 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGT
255 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCAAAACTTGGT
* * *
18201389 AGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAGAAAATCAGCTAAAAACTCGAAGTGTACA
320 AGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATCAGCTAAAAACTCGAAGTGTACA
* *
18201454 AGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTAGAAGCAAA
385 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAA
* *
18201519 CCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTAACGAGGGATAGGACG
450 CCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGAGG
* * *
18201584 CCAATATAAGGGCAAAGTACCAGCACCCATCGCATATCATGAGCGCACACCCCCCAGCCCCCTTC
514 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCC--C
* * * **
18201649 GATCGTCGAAACCCCAATGCCGCCAGTCAGGTTCTCCAGCGATGCTCTGGCGATGGTGCCCCGAC
577 GATCGTCGAAACCCCAATGCCGTCAGTCAGGTTCTCC-GTGATGCTCCGATGATGGTGCCCCGAC
* **
18201714 GAAGAAATAA-GCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTACCGCAACCCTCGGTCCGA
641 GAAGAAA-AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGA
* *
18201778 TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
705 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * * ** **
18201843 CAACCCACGAAACGAGCGTGTTGGCGCTCAGCTAGCTAGAGGGGTTGGATGCGTAAGCCGAGGAT
770 CAACCCACGAAACGAGAGTGTGGGCACTCAGCCAGCCAGAAGGGCGGGATGCACAAGCCGAGGAT
** * * ** * * *
18201908 CGACTGGGT-CCCCTCTACGTGCTGTCGATCTTGTTGCCACAACCCTCGATCTGGTCTGAT
835 CGACCAGGTCCCCCTCTACGTGCTGCCGATCCTACTACCACAACCCTCGATCTAGTCT-AA
* *
18201968 CTTAGATTGAGAATGAAC-TCTGTATGCCTAAGCCAATCGACG-A-AA-CGAGCGGGC-A-GGCG
1 CTTAGACTGAGAATGAACTTC-GTATGCCTAAGCCAACCGACGAACAAGCGAGCGGGCGACGGCG
18202027 GGCACTACGCCCGGCCTAGAGAGACGGGATGCGCAAGCCGTGGATTCGATAGGGTGGTAGGT-GG
65 GGCACTACG-CCGG-CTAGAGAGACGGGATGCGCAAGCCGTGGA-TCGATAGGGTGGTAGGTGGG
*
18202091 -TTAGGCACA-CTTCATATGTTCTAGCATGCCAATGCCATTTTTATGTC-T-TAAATTCATAC-A
127 TTTAGGCACATCTTCATAT-TTCTAGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
18202151 TGGATCTCTTAAGCCTTCACGTAG-TTCATGGCAAGACGACTCATTTTCCTATTTTTCGCGA-TC
191 TGG-TCCCTTAAGCCTTCACGTAGTTTCATGGCAAGACGACTCATTTT-CTATTTTTCACGATTT
* * *
18202214 TCAAACTTTTTGCGGGTTTGAGA-TTTTTAAAATTTTTTCTCAAAAGGAG-TTTGGCCCCAAAAC
254 TGAAACTTTTTAC-GGTTCGAGATTTTTTAAAA-TTTTT-TCAAAAGGAGTTTTGG-CCCAAAAC
* * *
18202277 -TGGTAGACGTGATCATTGTATTTTTATTGGCATGCCAAAAAAAAAAATCAGCTAAAAACTCTAA
315 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG-C-AAAAAAAAAATCAGCTAAAAACTCGAA
*
18202341 GTGT-CAAGATTTTGTGACCATTTGGAAAAAAGTGTCCCCATTTTCAGACCACTTTAGTGGCTAC
378 GTGTACAAGATTTTGTGACCATTT-GAAAAAAGTGTCCCCA-TTTCAGA-CACTTTAATGGCTAC
*
18202405 TGGAAGCAAACCTGT-AAATCTCAAATGCTCTTTCAAGGGGGGTGTGAGTT-TCAGGGGTTTAAT
440 TGGAAGCAAACCTGTAAAATCTCAAATGCTCTTT-AA--GGGGTGTGAGTTCTC-GAGGTTTAAT
* * *
18202468 GAGGGATAGGGGGTCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAGACCC
501 GAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC
* * * *
18202533 CCCCGGGCCCCCCGATC-TCCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGTGATTCTCCGATG
565 CCCC-AGCCCCCCGATCGTCGA-AACCCCAATGCCGTCAGTCAGGTTCTCCGTGATGCTCCGATG
* * *
18202597 ATGGTGCCCCGACGAAGAAAAATGCGGCA-CAACACATGCTCGAGCCCAGCATGTGCTGTCGGAA
628 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAA
* * * * *
18202661 CCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTA
693 CCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
18202709 ACCGACGAAA
Statistics
Matches: 1434, Mismatches: 167, Indels: 83
0.85 0.10 0.05
Matches are distributed among these distances:
891 23 0.02
892 502 0.35
893 121 0.08
894 48 0.03
895 146 0.10
896 88 0.06
897 156 0.11
898 24 0.02
899 14 0.01
900 8 0.01
901 1 0.00
902 172 0.12
903 131 0.09
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (894 bp):
CTTAGACTGAGAATGAACTTCGTATGCCTAAGCCAACCGACGAACAAGCGAGCGGGCGACGGCGG
GCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTAGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTGAAACT
TTTTACGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCAAAACTTGGTAGACGT
GATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGAGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCGATCGTCGA
AACCCCAATGCCGTCAGTCAGGTTCTCCGTGATGCTCCGATGATGGTGCCCCGACGAAGAAAAAT
GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAG
ACTGGGAATGAACTCCGTATGCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
ACGAGAGTGTGGGCACTCAGCCAGCCAGAAGGGCGGGATGCACAAGCCGAGGATCGACCAGGTCC
CCCTCTACGTGCTGCCGATCCTACTACCACAACCCTCGATCTAGTCTAA
Found at i:18203406 original size:26 final size:26
Alignment explanation
Indices: 18203370--18203423 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
18203360 CCTATCCGAT
18203370 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
18203396 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
18203422 CT
1 CT
18203424 AAGTCCACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:18204307 original size:26 final size:26
Alignment explanation
Indices: 18204271--18204323 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18204261 CCGGTCCGAT
* *
18204271 CTTAGACTGGGAACGAACTTCGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
*
18204297 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
18204323 C
1 C
18204324 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACAAACTCCGTATG
Found at i:18204672 original size:903 final size:898
Alignment explanation
Indices: 18202720--18205199 Score: 3510
Period size: 903 Copynumber: 2.8 Consensus size: 898
18202710 CCGACGAAAT
* * * *
18202720 GGGCGGGCAGGCACTACGCCGGCCAAAGAGACAGGATGCACAAGTCGTGGATCGATAGGGTGGTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTA
* * **
18202785 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGATAATTTTTATGGCTTGTAAATTCA
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCTAATG-CCATTTTTATGGCTTGTAAATTCA
*
18202850 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTAGTTTTTTATTT-TGCA
130 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTGT-CA
** * * **
18202914 CAATTTTGGAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTGAAAGGAGTTTTATCCCCA
194 CAATTTTCAAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTTTGGAAGGA-TTTTGGCCCCA
* * *
18202979 TACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCAA
257 AACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * * *
18203044 AGTGTACAAGATTTTATGACAATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTATTG
321 AGTGTACAAGATTTT-GGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
18203109 GCAGCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT-TTGG
385 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGATGG
* * *
18203173 AATAGGAGGCCAATATAAGGGCTAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTG
450 -ATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* ** *
18203238 CCCCCCCCGATCGTC-AGAACCCCAATGTTGCCGGTCAGGTTC-TC-------CT---ACGATGG
514 ACCCCCCCGATCGTCGA-AACCCCAATGCCGCTGGTCAGGTTCTTCGGTGATGCTCCGACGATGG
* * *
18203291 TGCCTCGGTGAAGAAAAAAGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCT
578 TGCCTCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCT
** * *
18203356 CA-GTCCTATCCGATCTTAGACTGGGAATGAACCCCGTATGCTTAGACTGGGAATGAACTCCGTA
643 -AGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTA
* * * *
18203420 TGCTAAGTCCACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAAG
707 TGCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCACAAG
* * * ** *
18203485 TCGAGGATTGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCTGCAACCCTCGGTCCAGTC
772 CCGAGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCCTACTGCCACAACCCTCGATCCAGTC
** * * * *
18203550 TGATCTTAGATTGGGAATGAACTCCGTATGCTTAAGCCAACCGACGAAACGAGCGGGCGGGC
837 TGATCTTAGACCGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACGAACGGGCAGGC
* * * *
18203612 GGGCGGGTGGGCACTA-GCTGGCCAGAGAGACGGGATGAACAAGCCGTGGATCGGTAGGGTGGTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTA
* * *
18203676 GGTAGGTTTAGTCACATCTTCATATTTCTACGTGCTAATGCCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCTAATGCCATTTTTATGGCTTGTAAATTCAT
* **
18203741 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTGTCATG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTGTCACA
* *
18203806 ATTTTTAAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTGGAAGGACTTTTGGCCCCAAAC
196 ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAAGGA-TTTTGGCCCCAAAC
* *
18203871 TTGGTAGACATGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
260 TTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
18203936 GTACAAGATTTTGGCCACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTAGC
324 GTACAAGATTTTGG--ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
18204001 AGCAAACCTGTAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGATGGA
387 AGCAAACCTGT-AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGATGGA
* * * *
18204066 TAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACACCCCCCG-G
451 TAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGAC
* * *
18204130 CCCCTCTATCGTCGAAACCCCAATGCCGCTGGTCAGGTTCTTCGGTGATGCTCCGACGATGGAGC
516 CCCCCCGATCGTCGAAACCCCAATGCCGCTGGTCAGGTTCTTCGGTGATGCTCCGACGATGGTGC
* * *
18204195 CTCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTAGG
581 CTCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTAGG
* *
18204260 TCCGGTCCGATCTTAGACTGGGAACGAACTTCGTATGCTTAGACTGGGAATAAACTCCGTATGCC
646 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATG-C
* * *
18204325 TAAGTCAACCCCCCGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCATGCC
710 TAAGTCAA-CCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCACAAGCC
* * **
18204390 G-GGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCACGACCCTCGATCTGGTCTG
774 GAGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCCTACTGCCACAACCCTCGATCCAGTCTG
18204454 ATCTTAGACCGGGAATGAACT-CGTATGCCTAAACCAAACCGACGAAACGAACGGGCAGGC
839 ATCTTAGACCGGGAATGAACTCCGTATGCCTAAACC-AACCGACGAAACGAACGGGCAGGC
* * *
18204514 GGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCCATAGGGTGGTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTA
* *
18204579 GGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCTAATGCCATTTTTATGACTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCTAATGCCATTTTTATGGCTTGTAAATTCAT
* *
18204644 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGGCTCGTTTTCTATTTGTCACA
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTGTCACA
** *
18204709 ATTTTCAAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTAGGCCCCAAA
196 ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-GGAAGGATTTT-GGCCCCAAA
*
18204774 CTTGGCAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
259 CTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
18204839 GTACAAGATTTTGTGACCATTT-AAAGAAAGCGTCCCCATTTCAGACACTTTAATAGCTACTGGG
324 GTACAAGATTTTG-GACCATTTGAAA-AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
18204903 AGCAAACCCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
387 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGATGGAT
* *
18204968 AGAAGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGAC
452 AGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGAC
** * * * *
18205033 CCCCCCGATCACCGGAACCCCAATGCCG-TCGGTTAGGTTCTCCGGTGATGCTCCGACGATAGTG
516 CCCCCCGATCGTCGAAACCCCAATGCCGCT-GGTCAGGTTCTTCGGTGATGCTCCGACGATGGTG
* * * *
18205097 CCTCGATGAACAAAAATGTGGCACCAACA-ATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCG
580 CCTCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTAG
* * *
18205161 GTCTGGTCGGATCTTAGACTAGGAATGAACTCCGTATGC
645 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
18205200 CTAAGTCAAC
Statistics
Matches: 1410, Mismatches: 148, Indels: 50
0.88 0.09 0.03
Matches are distributed among these distances:
888 6 0.00
889 94 0.07
890 199 0.14
891 184 0.13
892 17 0.01
898 2 0.00
900 1 0.00
901 246 0.17
902 236 0.17
903 383 0.27
904 42 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCTAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTGTCACA
ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAAGGATTTTGGCCCCAAACT
TGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGATGGATAGGA
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCC
CGATCGTCGAAACCCCAATGCCGCTGGTCAGGTTCTTCGGTGATGCTCCGACGATGGTGCCTCGA
TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTAGGTCCGG
TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCTAAGTC
AACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATC
GGTCGGGTCCCCCTCTGCATGCTGCCGATCCTACTGCCACAACCCTCGATCCAGTCTGATCTTAG
ACCGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACGAACGGGCAGGC
Found at i:18205612 original size:26 final size:26
Alignment explanation
Indices: 18205576--18205628 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18205566 CAGGTCCGTT
*
18205576 CTTAGACTGGGATTGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18205602 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18205628 C
1 C
18205629 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18206505 original size:26 final size:26
Alignment explanation
Indices: 18206476--18206528 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18206466 CTGGTCCGAT
*
18206476 CTTAGACTGGGACTGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
18206502 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
18206528 C
1 C
18206529 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:18207416 original size:26 final size:26
Alignment explanation
Indices: 18207380--18207432 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18207370 CCAGTACAAT
18207380 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
18207406 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
18207432 C
1 C
18207433 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:18209199 original size:26 final size:26
Alignment explanation
Indices: 18209163--18209215 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18209153 CCAGTACAAT
18209163 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
18209189 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
18209215 C
1 C
18209216 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:18209704 original size:890 final size:890
Alignment explanation
Indices: 18205275--18210435 Score: 6965
Period size: 890 Copynumber: 5.8 Consensus size: 890
18205265 GGGGATCGAC
*
18205275 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA-G
1 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
** *
18205339 GGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCC
66 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * *
18205404 ATCGCACATCATGTGCGCACACTCCCCTGG-CCCCCTGATCGCCAAAAACCCCAATGCTGCCGGT
131 ATCGCACATCATGTGCACACAC-CCCCCGGCCCCCCCGATCGCC-GAAACCCCAATGCCGCCGGT
* * * * *
18205468 CAGGTTCTCCGATGATGC-CTCGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACTAGCACATG
194 CAGGTTCTCCGGTGATGCTC-CGACGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATG
* ** * * *
18205532 CTCGAGCCCAGCATGTGTTGCCGTAACCCTCAGT-CAGGTCCGTTCTTAGACTGGGATTGAACTC
258 CTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCA-GT-CGATCTTAGACTGGGAATGAACTC
* *
18205596 CATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGCGGGCG
321 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * *
18205661 CTCAGCCGGCCAGAAGGGCGGGCTGTGCAAGCCGGGGATCGA-CTGGGTCCCCCTCTACGTGCTG
386 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTACGTGCTG
* * ** *
18205725 CCGATCCTATTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
450 CCGATCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
18205790 AAGCGAACCGATGAAACGAGCGGACGGGCGAGCGGGCACTACGCCGGCCAGAA-AGACGGAATGC
515 AAGCCAACCGA-CAAA--A-C-GA---GCGGGCGGGCACTACGCCGGCCA-AAGAGACGGGATGC
* * * * * * * *
18205854 GCAAGCCGTAGATCTATAGGGTGGTAGATTGGTTTAGGCACATCTTTATATTTCTACGTGCCAAT
571 ACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* * *
18205919 GCCATTTTTATGGCTTGCAAATCCATACAATGGTCCCGTAAGCCTTCACGTGAAGTTTCATGGCA
636 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * *
18205984 AGACGACTCGTTTTCTATTTTTCACAAATTTTGAAA-TTTTTGCGGTTCAAGATTTTTTAAAATT
701 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
*
18206048 TTTTCGGAAA-CAGTTTTGGCCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
766 TTTTC-GAAAGGAGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
18206112 ACAAAAAAATGCAGCTAAAAACTCGAAGTGTACAAGATTTTG-GCCACCATTTGAAAAAAGTGT
829 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG--ACCATTTGAAAAAAGTGT
* *
18206175 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGGTCTTTAAGG
1 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
18206240 GGGTGTGAGCTCTCGAGGTTTGATGAGGGATAGGTGG-CAATATAAGGGCCAAGTACCAGCACCC
66 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* *
18206304 ATCGCACATCATGTGCACACACCCCCTCGGCCCCCCCGATCACCGAAACCCCAATGCCGCCGATC
131 ATCGCACATCATGTGCACACACCCCC-CGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTC
** * ** * * * *
18206369 AGGTTCTCCGACGATGCTTCGACGATGGTGCCCTGGCAAAGAAAAATGCGGCACCAGCAGAAGCC
195 AGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCT
* * ** * *
18206434 CGAGCCTAGCATGTGCTGCCACAACCCTTGGTCTGGTCCGATCTTAGACTGGGACTGAACTCTGT
260 CGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAGT-CGATCTTAGACTGGGAATGAACTCCGT
* * * * *
18206499 ATGCTTAGACTGGGAATGAACTTCGTATGCCTATGTCAACACACGAAACGTA-CGTGCCGACGCT
324 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG-AGCGTGCGGGCGCT
** * * *
18206563 CAAGCCGGCCAGAGGGGCAAGATGCGCGAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTACC
388 C-AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCC
* ** * * *
18206628 GATCCTACTACCGTAACCCTTGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
452 GATCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
18206693 GCCAACCGATGAAACGAGCAGGCGTGCGGGCGGGCAGGCACTACGCCGTCCAGAGAGACGGGATG
517 GCCAACCGA--CAA--A--A--CGAGCGGGC--G--GGCACTACGCCGGCCAAAGAGACGGGATG
* * * *
18206758 CCCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGTACATCTTCATATTTTTGCATGCCAA
570 CACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
*
18206823 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTCAGCCTTCACGTGAAGTTTCATGGC
635 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * * *
18206888 AAGACGACTCGTTTTCAATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATCTTTAAAAAT
700 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT
18206953 TTTTTC-AGAAGGCA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
765 TTTTTCGA-AAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
18207016 CACAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
828 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
18207079 CCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAA-CTCAAATGCTCTTTAAGG
1 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * *
18207143 GGGTGTTAGTTCTCGAGGTTTTATGAGGGATAGGGGGCCAATATTAGGGCCAAGTACCAGCACCC
66 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * *
18207208 ATCACACATCATGTGCACACACCCCCCGGCCCCCCCGATCGTCGGAACCCCATTGCCGCCGGTCA
131 ATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCA
* * * *
18207273 GGATCTCCGGGGATGCTCCGACTATGGTGCCCCAGCGAAGAAAAATGCGACACCAGCACATGCTC
196 GGTTCTCCGGTGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCTC
* * * *
18207338 GAGCCCAGCATGTACTGCCGCAACCCTCGGGTCCAGTACAATCTTAGACTGGGAAAGAACTCCGT
261 GAGCCCAGCATGTGCTGCCACAACCCTC-GGTCCAGT-CGATCTTAGACTGGGAATGAACTCCGT
* *
18207403 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAATGAGCGTGCGGGCGCTC
324 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * *
18207468 AGCCGACCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACATGCTGTCGA
389 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGA
* *
18207533 TCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACCCCGTATGCCTAAGC
454 TCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
18207598 CAACCGACAAAACGAGCGGGCGGGCACTACGTCGGCTAAAGAGACGGGATGCACAAGCCATGGAT
519 CAACCGACAAAACGAGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCACAAGCCGTGGAT
* *
18207663 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCACTTCCATTTTTATGG
584 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* * * *
18207728 CTTGTACATTCATGCGATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
649 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
*
18207793 TCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAG
714 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAG
* ** *
18207858 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTGTGCACAAAAAACTTCAGC
779 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
*
18207923 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAACAAGTGT
844 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
18207970 CCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
1 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
18208035 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
66 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
** * * * * *
18208100 ATCGCACATCATGTGCGTACACCCCCCGGCCCCGCCG-TCGCCGAAACCCAAATTCCACCGGTAA
131 ATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCA
* *
18208164 GGTTCTTCGGTGATGCTCCGGCGATGCTCCGGTGATGGTGCCCC-GACAAAGAAAAATGCGGCAC
196 GGTTCTCCGGTGATGCT-C--CGA-----C---GATGGTGCCCCAG-CGAAGAAAAATGCGGCA-
* * * * * *
18208228 CTCA-CACATACTCGAGCCTAGCA--TG-T-CCACAACCCTCGATTCGGTCTGATGTTAGACTGG
248 C-CAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAGTC-GATCTTAGACTGG
* * * *
18208288 GAATGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAG
311 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * ** **
18208353 CGTGCGGGCGCTTAGCCGGCCGGAAGGGCGGGATGTGCAAGCTAGGGATCGGCCGGGTCCCCCTC
376 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTC
* * * *
18208418 TACGTGCTGTCGATCCTACTGCCACAACCCTCAGTCCGGTCTGATCTTAGATTGGGAATGAACTC
441 TACGTGCTGCCGATCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* ** *** ** ****
18208483 CGTATGCCAAAGCCAACCGACGGAACGAGCGGGCGGGTGGTA-GGTGGGTTTAG-G--GTGG-T-
506 CGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCACTACGCCGGCCAAAGAGACG-GGATG
* * * * * * *
18208542 AACAGGTTCG-GGATCTATAGGATGGTAGGTTGGTTTAGGCACATCTTCATATTTTTGCATGCCA
570 CACAAG-CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* *
18208606 ATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGG
634 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * *
18208671 CAAGACGACTCGTTTTCTATTTTTCACCATTTTCGAAACTTTTTACGGTTCGAGAATTTTTAAAA
699 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA
* * * *
18208736 TTTTTTCGGAAGGAGTTTTGGCCCGAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGCCATGC
764 TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
18208801 CCAAAACAATTCAGCTAAAAACTCGAA-TAGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
829 ACAAAAAAATTCAGCTAAAAACTCGAAGT-GTACAAGATTTTGTGACCATTTGAAAAAAGTGT
18208863 CCCCATTTCAGACACTTTAATGGCTACT-GCTAGCAAACCTGTAAAA-CTCAAATGCTCTTTAAG
1 CCCCATTTCAGACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * *
18208926 GGGGTGTTAGTTCTCGAGGTTTTATGAGGGATAGGGGGCCAATATTAGGGCCAAGTACCAGCACC
65 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * *
18208991 CATCACACATCATGTGCACACACCCCCCGGCCCCCCCGATCGTCGGAACCCCATTGCCGCCGGTC
130 CATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTC
* * * * *
18209056 AGGATCTCCGGGGATGCTCCGACTATGGTGCCCCAGCGAAGAAAAATGCGACACCAACACATGCT
195 AGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCT
* * *
18209121 CGAGCCCAGCATGTACTGCCACAACCCTCGGTCCAGTACAATCTTAGACTGGGAAAGAACTCCGT
260 CGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAGT-CGATCTTAGACTGGGAATGAACTCCGT
* *
18209186 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAATGAGCGTGCGGGCGCTC
324 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * *
18209251 AGCCGACCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACATGCTGTCGA
389 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGA
* *
18209316 TCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACCCCGTATGCCTAAGC
454 TCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
18209381 CAACCGACAAAACGAGCGGGTGGGCACTACGTCGGCTAAAGAGACGGGATGCACAAGCCATGGAT
519 CAACCGACAAAACGAGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCACAAGCCGTGGAT
* *
18209446 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCACTTCCATTTTTATGG
584 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* * * *
18209511 CTTGTACATTCATGCGATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
649 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
*
18209576 TCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAG
714 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAG
* * *
18209641 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCGTGCACAAAAGAATTCAGC
779 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
18209706 TAAAAATTCGAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTGT
844 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
18209753 CCCCATTTCAAACAATTTAATGGCTACTGGCAGCAAACCTGTAAAA-CTCAAATGCTCTTTAAGG
1 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * * *
18209817 GGGTGTGAGTTCTCGAGGCTTGATGAAGGATAGGGGGCCAGTAAAAGGGCCAAGTACCAGCACCC
66 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * *
18209882 ATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCTGGAACCCCAATGCCGCCAGTCA
131 ATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCA
* *
18209946 GGTTCTCCGGTGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGCGGTACCAGCACATGC-C
196 GGTTCTCCGGTGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCTC
* * * *
18210010 AGAGCCTAGCATGTGCTGCCACAACCCT-GATCCGGTCTGATCTTAGACTGGGAATGAAGTCCGT
261 -GAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAGTC-GATCTTAGACTGGGAATGAACTCCGT
* * *
18210074 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTTCGGGGCACT
324 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGGCGCT
* * * * *
18210139 CAACCGGCCAGAGGGGCGGGATGTGCAAGCGGGGGATCGATCGGGTCCCCCTCTGCGTGTTGCCG
388 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCG
* * *
18210204 ATCCTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATAAACTCCGTATGCCTAAG
453 ATCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
** * * * * * * * *
18210269 CCAACCGATGAAACGAGCGAGTGGGCAGTACACCAGCCAGAGAGACTGGATGCGCAAGCCGTGGA
518 CCAACCGACAAAACGAGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCACAAGCCGTGGA
*
18210334 TCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
583 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
18210399 GCTTGTAAATTCATACAAT-GTCCCTTAAGCCTTCACG
648 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
18210436 ATTTGTAAAA
Statistics
Matches: 3754, Mismatches: 440, Indels: 146
0.86 0.10 0.03
Matches are distributed among these distances:
880 2 0.00
881 18 0.00
882 25 0.01
883 2 0.00
884 1 0.00
885 235 0.06
886 7 0.00
887 2 0.00
888 102 0.03
889 370 0.10
890 435 0.12
891 397 0.11
892 232 0.06
893 363 0.10
894 6 0.00
895 10 0.00
896 1 0.00
897 8 0.00
898 224 0.06
899 16 0.00
900 291 0.08
901 176 0.05
902 28 0.01
903 301 0.08
904 206 0.05
905 256 0.07
906 39 0.01
907 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (890 bp):
CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
ATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCA
GGTTCTCCGGTGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCTC
GAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAGTCGATCTTAGACTGGGAATGAACTCCGTAT
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATC
CTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGACAAAACGAGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCACAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTT
TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
Found at i:18210080 original size:26 final size:26
Alignment explanation
Indices: 18210051--18210103 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18210041 CCGGTCTGAT
*
18210051 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18210077 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18210103 C
1 C
18210104 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18210936 original size:26 final size:26
Alignment explanation
Indices: 18210900--18210952 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18210890 CTGATCTAAT
*
18210900 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18210926 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18210952 C
1 C
18210953 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18211843 original size:26 final size:26
Alignment explanation
Indices: 18211807--18211859 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18211797 CTGATCTAAT
*
18211807 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18211833 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18211859 C
1 C
18211860 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18212743 original size:26 final size:26
Alignment explanation
Indices: 18212705--18212757 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18212695 CCAATCCGAT
* *
18212705 CTTAGACTAGGAATGAGCTCCTTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
18212731 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
18212757 C
1 C
18212758 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18213630 original size:26 final size:26
Alignment explanation
Indices: 18213591--18213642 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18213581 TCTGGTCCGA
*
18213591 TCTTAGACTAGGAATGAACTTCGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
*
18213617 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
18213643 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTTAGACTAGGAATGAACTCCGTAT
Found at i:18214394 original size:903 final size:900
Alignment explanation
Indices: 18210443--18215613 Score: 6796
Period size: 907 Copynumber: 5.8 Consensus size: 900
18210433 ACGATTTGTA
* * *
18210443 AAACTTTTTACGGTTCAAGATTTTTTAAAATTATTTTGA-AAGGTGTTTTGACCCCAAACTTGGT
1 AAACTTTTTACGGTTCGAGATTTTTTAAAATT-TTTTCAGAAGGAGTTTTG-CCCCAAACTTGGT
* * * *
18210507 AGACGTGATCCTTGTATTTTTGGTGGCATGTACAAAAAAATTCAG-CTAAAACTCGAAGTGTACA
64 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACA
* * *
18210571 AGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTT-AAGACACTTTAACGGCTACTGGCAACAA
129 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA-ACACTTTAATGGCTACTGGCAGCAA
*
18210635 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGG
193 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
18210700 GCCAATATAAGGGCCAAGTACCAGCACCCAGT-GCACATCATGTGCGTACACCCCTCC-GCCCCC
258 GCCAATATAAGGGCCAAGTACCAGCACCCA-TCGCACATCATGTGCGCACACCCC-CCGGCCCCC
* * * *
18210763 CCGATCG-TCGGAACCCCAATTCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCC
321 CCGATCGCT-GGAACCCAAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* *
18210827 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCGCAGCATGTGCTACCGCAACCCTCGGTCT
385 GACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCT
* *
18210892 GATCTAATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
450 GATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* ** * * * * *
18210957 GCCAACCCATGAAACGAGCGTGCAGGCGCTCAGTCGGCAAGAGGGATGGGATGTGCAAGTCGGGG
515 GTCAACCCACAAAACGAGCGTGCGGGCGCTCAG-CGGCCAGAGGGACGGGATGCGCAAGTCGAGG
*** * * * * *
18211022 ATCGATTGGGTCCCCCTCTGCGTGCTGTCGAACCTGCTACCACAACCCTCAGTTCGATCCGATTT
579 ATCGGCCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGGTCCGATCT
* *
18211087 TAGAATGGTAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGTGCGGACGGGCG
644 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----ACG-GCGGACGGGCG
18211152 GGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
704 GGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * *
18211217 CTTTAGGCACATCTTCGTATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAAT
769 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
18211282 GGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTT
834 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTT
18211347 TG
899 TG
* * * * * *
18211349 AAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCAAAAAGAGTTTT-CGGCCAAACCTGGTA
1 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGC-CCCAAACTTGGTA
* * * *
18211413 GACGTGATCCTTGCAATTTAT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTTTACA
65 GACGTGATCCTTG-TATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACA
* * *
18211477 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAG
129 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
*
18211542 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
194 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
18211607 CCAATATAAGGGCCAAGTACCAGCACCCAGCGCACATCATGTGCGCACACCCCTCCAGCCCCCCC
259 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCCC
* * * * * *
18211672 GATCGCCGGAACCCCAATTCCGCCGGTCAGGTTCTCCGATGATGCTCTGGCGATGGTGCCCCGAC
323 GATCGCTGGAACCCAAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* *
18211737 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCTGAT
388 GAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGAT
* * *
18211802 CTAATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
453 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
18211867 AACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCAAGAGGGATGGGATGTGCAAGTCGGGGATC
518 AACCCACAAAACGAGCGTGCGGGCGCTCAG-CGGCCAGAGGGACGGGATGCGCAAGTCGAGGATC
* * * * ** *
18211932 GACCGGGTCCCCCTCTACGTGCTGTCGAACCTGCTACCACAACCCTTAGTTCTATCCGATTTTAG
582 GGCCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGGTCCGATCTTAG
* *
18211997 AATGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGACGGGCGGACGGGCGGGC
647 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----AC-GGCGGACGGGCGGGC
* *
18212062 AGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTT
707 GGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* ** * *
18212127 TAGGCATATCTTTGTATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGT
772 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
18212192 CCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTG
837 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTG
* ** *
18212256 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTTTCCCAAACCTGGTAG
1 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGCCCCAAACTTGGTAG
* * * * *
18212321 ACGTGATCCTTGCAATTTAT-TTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTTTACAA
66 ACGTGATCCTTG-TATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACAA
*
18212385 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTACTGGCAGCAAAC
130 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAC
18212450 CTGTAAAATCTCAAATGCTCTTTAAGGGGGCT-TGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
195 CTGTAAAATCTCAAATGCTCTTTAAGGGGG-TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
** *
18212514 TAAATACAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---------CCCCCCG
259 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * * * * *
18212570 ATCGCTAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCAACG
324 ATCGCTGGAACCCAAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
* ** ** **
18212635 AAGAAAAATACGGCACCAGCACATGCCTAAAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAAT
389 AAGAAAAATACGACACCAGCACATGCC-CGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGAT
* * * * * *
18212700 CCGATCTTAGACTAGGAATGAGCTCCTTATGCTTAGACTGGGAATGAACTCCATATGCCTAGGTC
453 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
18212765 AACCCACGAAACGAGTGTACGGGCGCTTAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
518 AACCCACAAAACGAGCGTGCGGGCGCTCAG-CGGCCAGAGGGACGGGATGCGCAAGTCGAGGATC
* ** *
18212830 GGCCAGGTCCCCCTCTACGTG-T-T-G---CTG------CAACCCTTGGTCCAGTCCGATCTTAG
582 GGCCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGGTCCGATCTTAG
** * *
18212883 ACCAGGAATGAACTCCGCATGCCTAAGCCAACCGACGAAACG-A--GCGGGCGGGCGGGCGGGCA
647 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGCGGACGGGCGGGCGGGCA
* * * *
18212945 CTACGCC-GTCCAGAGCGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGCGAGTTTAGA
712 CTACGCCAG-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * *
18213009 CACATCTTCCTATTTCTACATGGCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCT
776 CACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * **
18213074 TAATCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTCA
841 TAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTG
* * **
18213134 AAAATTTTTACTGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTAT-GT
1 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTT-GCCCCAAACT-TGGT
* *
18213198 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
64 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACA
* * *
18213263 ATATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAA
129 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
18213328 CCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
194 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* **
18213392 CCAAAATAACAGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACTCACCCCCCCGG-CCCC
259 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA--CA-CCCCCCGGCCCCC
* * * * **
18213456 CCGATCGCCGGAATCCAAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGCGCCTTG
321 CCGATCGCTGGAACCCAAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* * * * *
18213521 ACGAAGAAGAATGCGACACCAG-ACTTGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
386 ACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTG
* * * * *
18213585 GTCCGATCTTAGACTAGGAATGAACTTCGTATTCTTAGACTGGGAATGAACTCCGTATGCCTAAG
451 ATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* ** * *
18213650 TCAACCCACAAAATGAGCGTATGGGCGCTCAGCAGGCCAGAGGGGCAGGATGCGCAAGTCGAGGA
516 TCAACCCACAAAACGAGCGTGCGGGCGCTCAGC-GGCCAGAGGGACGGGATGCGCAAGTCGAGGA
* * * * ** *
18213715 TAGGTCGGGTCCCCCTCTATGTGCTGTCGATCTTGCTACTGCAACCCTCAGTCCGGTCCAATCTT
580 TCGGCCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGGTCCGATCTT
* * *
18213780 AGACTGGGAATGAACTCTGTTTGCCTAAGCCAACCGACGAAACGAACGGGCGGACGGGTGGGCGG
645 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAC-GGCGGACGGGCGGGCGG
* *
18213845 GCACTACACCAGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTA
709 GCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * *
18213910 GGCACATCTTCATATTTCTACATGCCAATGCCATTTTAATGGCTTGTAAATTCCTAAAATGGTCC
774 GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
18213975 CTTAGGCCTTCACGTGAAGTTTCATGGCAATACGACTCGTTTTCTATTTTTCATGATTTTTG
839 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTG
* * *
18214037 AAACTTTTTACGGTTTGGGATTTTTTAAAATTCTTTCAGAAGGAGTTTTAGCCCCAAACTTGGTA
1 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTT-GCCCCAAACTTGGTA
* * *
18214102 GATGTGATACTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCCAAAAACTCAAAGTGTACAA
65 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACAA
**
18214167 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGATAGCAAAC
130 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAC
* * *
18214232 CTGTAAAATCTCAAATGCACTGTAAGGGGGTGTGAGTTCTCGAGGTCTGATGAGGGATAGGGGGC
195 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
18214297 CAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACAACCCCCCGGCCCCTCCG
260 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCGGCCCCCCCG
* * * *
18214362 ATCGCTGGAACCCAAATGCCACCGGTCAGGTTCT-CGACGATGCTCCGACGATCGTGCCACAACG
324 ATCGCTGGAACCCAAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
* * * * *
18214426 AAGAAAAAT--GAGTACCAACACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCAGTCCTG-
389 AAGAAAAATACGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGT-CTGA
* * *
18214488 TCCAATTTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTACGCCTAAGT
452 TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
** * * *
18214553 CAACGTACAAAATGAGCGTGCGGGCGCTCAGCTGGCCAGATGGG-CAGGATGCGTAAGTC-AGAG
517 CAACCCACAAAACGAGCGTGCGGGCGCTCAGC-GGCCAGA-GGGACGGGATGCGCAAGTCGAG-G
* * * * * * *
18214616 ATCGGCCAGGTCCCTCTCTGCATGCTGTCGATCCTACTGCCACAACCCTCAGTCTGGTTCC-ATC
579 ATCGGCCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGG-TCCGATC
* * * *
18214680 TTAGACTGGAAATGAACTCCGTATGCCTAAGCCGATCGACGAAACG-A-----G-CGGGTGGGCG
643 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGCGGACGGGCGGGCG
** * *
18214738 GGCACTACATCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
708 GGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
18214803 TGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTC
773 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
18214868 CCTTAAGCCTTCACGTAAAGTTTCACGGCAAGATGACTCATTTTTTATTTTTCATGATTTTTG
838 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTG
** *
18214931 AAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
1 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTT-GCCCCAAACTTGGTA
* *
18214996 GATGTGATACTTGTATTTTTGTTGGCATGCA-AAAAACAATTCAGCCAAAAACTCAAAGTGTACA
65 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCCAAAAACTCAAAGTGTACA
*
18215060 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
129 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
*
18215125 CCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
194 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
18215190 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATATGCGCACACCCCCCCGGCCCCCCC
259 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCC
* * * * *
18215255 GATCACTGGAACCCAAATGCCGTCGGTCAGGTTCTCCGACGATGCTGCGACGATGGTGCCTCGAT
323 GATCGCTGGAACCCAAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
*
18215320 GAAGAAAAATAC-AGCACCAGCACATGCCCGAGCCTAGCATGTGCTACCGCAA-CC-C--TCTG-
388 GAAGAAAAATACGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGA
* * * *
18215379 TTCGATCTTAGACTGGGAATGAACTCCGTACGCTTACACTGGGAATGAACTCCGTATGCCTCAA-
452 TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT-AAG
* * * *
18215443 TCAA-CCATAAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGATGGGATGCGCAAG-CTGAAG
516 TCAACCCACAAAACGAGCGTGCGGGCGCTCAGC-GGCCAGAGGGACGGGATGCGCAAGTC-GAGG
* * * * * * * * * * * * * *
18215506 ATCAGTCGGGTCCCCTTCTGCATGCTGCCGATCCTACTATCGCAACCCTCGGTTCAGTTCAATCT
579 ATCGGCCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGGTCCGATCT
*
18215571 TAGACTGGGAATGAACTCCGGATGCCTAAGCCAACCGACGAAA
644 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
18215614 TGATTTTCGA
Statistics
Matches: 3827, Mismatches: 372, Indels: 148
0.88 0.09 0.03
Matches are distributed among these distances:
877 2 0.00
878 310 0.08
879 150 0.04
880 3 0.00
881 1 0.00
886 59 0.02
887 162 0.04
888 6 0.00
889 85 0.02
890 132 0.03
891 64 0.02
892 6 0.00
893 7 0.00
894 516 0.13
895 38 0.01
896 38 0.01
897 92 0.02
898 160 0.04
899 59 0.02
900 3 0.00
901 7 0.00
902 274 0.07
903 430 0.11
904 82 0.02
905 50 0.01
906 230 0.06
907 859 0.22
908 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (900 bp):
AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
CGCTGGAACCCAAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAA
GAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGATCCA
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACAAAACGAGCGTGCGGGCGCTCAGCGGCCAGAGGGACGGGATGCGCAAGTCGAGGATCGGCC
GGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGGTCCGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGCGGACGGGCGGGCGGGCACTAC
GCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTG
Found at i:18215421 original size:26 final size:26
Alignment explanation
Indices: 18215385--18215434 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18215375 TCTGTTCGAT
*
18215385 CTTAGACTGGGAATGAACTCCGTACG
1 CTTACACTGGGAATGAACTCCGTACG
18215411 CTTACACTGGGAATGAACTCCGTA
1 CTTACACTGGGAATGAACTCCGTA
18215435 TGCCTCAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTACG
Found at i:18216929 original size:26 final size:26
Alignment explanation
Indices: 18216891--18216943 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18216881 CTGATCTGAT
*
18216891 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18216917 CTTAGAGTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18216943 C
1 C
18216944 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18217621 original size:182 final size:183
Alignment explanation
Indices: 18217308--18217654 Score: 491
Period size: 182 Copynumber: 1.9 Consensus size: 183
18217298 TGGCAAGACG
* *
18217308 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAAGTTTTTC
1 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAAGTTTTTC
* ** * * *
18217373 GGAAGGAGTTTTGGCCCAAAACTTTTTAGACGTGATCCTTGTATTTTTTTTGGCGTGCACAAAAA
66 GGAAGGAGTTTTGGCCCAAAACATGGTACACATGATCCTTGTATTTTTTTTGGCATGCACAAAAA
*
18217438 AA-TTCAGCCAAAACCTCAAAGAGTACAAGATTTTGTTTCCATTTGAGGGATA
131 AATTTCAGCCAAAAACTCAAAGAGTACAAGATTTTGTTTCCATTTGAGGGATA
* * * * *
18217490 ACTCGTTTTTTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTT
1 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAAGTTTTTC
* *
18217555 GGAAGGAGTTTTGGCCCCAAACATGGTACACATGATCCTTGTCTTTTTTTTTGGCATGCA-AAAA
66 GGAAGGAGTTTTGGCCCAAAACATGGTACACATGATCCTTGT-ATTTTTTTTGGCATGCACAAAA
* * * *
18217619 AAATTTCAGCTAAAAACTCGAAGTGTACAGGATTTT
130 AAATTTCAGCCAAAAACTCAAAGAGTACAAGATTTT
18217655 CTGACCATTT
Statistics
Matches: 143, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
182 101 0.71
183 42 0.29
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.41
Consensus pattern (183 bp):
ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAAGTTTTTC
GGAAGGAGTTTTGGCCCAAAACATGGTACACATGATCCTTGTATTTTTTTTGGCATGCACAAAAA
AATTTCAGCCAAAAACTCAAAGAGTACAAGATTTTGTTTCCATTTGAGGGATA
Found at i:18218013 original size:26 final size:26
Alignment explanation
Indices: 18217977--18218029 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18217967 CCTGTTTGAT
18217977 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18218003 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18218029 C
1 C
18218030 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18218818 original size:901 final size:895
Alignment explanation
Indices: 18217490--18220662 Score: 4219
Period size: 901 Copynumber: 3.6 Consensus size: 895
18217480 TTGAGGGATA
* * *
18217490 ACTCGTTTTTTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTT
1 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTT
* * * * *
18217555 GGAAGGAGTTTTGGCCCCAAACATGGTACACATGATCCTTGTCTTTTTTTTTGGCATGCAAAAAA
66 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCAAAAAA
* * *
18217620 AATTTCAGCTAAAAACTCGAAGTGTACAGGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTC
130 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
18217685 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
195 AGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
18217750 TTCTCCAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCACCGCATAT
260 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
18217815 CATGTGCGCACACCCCCCTGACCCCCCAATCACCGGAACCCCAATGCTGCCGGTCAGGTTCTCCG
325 CATGTGCGCACACCCCCCTGACCCCCCGATCAGCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * *
18217880 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGTACATTCTCAAGCCCAGC
390 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGG-ACCAGCACATGC-CGAGCCCAGC
18217945 ATGTGCT-CTCGCAACCCTCGATCCTGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
453 ATGTGCTGCTCGCAACCCTCG-TCC-GTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
18218009 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCA
516 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCAA
** * * * ** * *
18218074 GAGGGGCAAGATCCGTAAG-TCGGGGATCGGCTGGGTCC-CCTTTTATGTGCTGCCAATCTTGCT
581 GAGGGGCGGGATGCGCAAGCT-GGTGATCGGCCAGGTCCTCCTTCTATGTGCTGCC-ATCCTGCT
* *
18218137 GCCGCAACCCTCGGTCCTGTCTGATCTTAGACTAGGAATGAACTTCCGTATGCTTAAGCCAATCG
644 GCCGCAACCCTCGGTCCTGTCTGATCTTAGACTAGGAATGAAC-TCCGTATGCCTAAGCCAACCG
* *
18218202 ACAAAACGAGCGGGCGGGCAGGCGGGCACTACGTCAGCCAGAGACACGGGATACGCAAGTCGTGG
708 ACAAAACGAGCGGGCGGGC-GGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGTCGTGG
* * *
18218267 ATCAATAGGGTGGTAGGAGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATACCATTTTTAT
772 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
* * *
18218332 GGCTTCTAAATTCATACAACGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACG
837 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
18218391 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTT
1 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTT
18218456 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAA
66 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAA
* * * * *
18218521 ACATTCAGCTAAAAACTCAAAGTGTGCAAGATTTTGTGACCATTTAAAAAAAATGTCACCATTTC
131 A-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
18218586 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAGGGGGGTGTGAG
195 AGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
18218651 TTCTCGAGGTTTTATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
260 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * *
18218716 CATGTGCGCACACCCCCTTGGCCCCCCCGATC-GTGGAACCCTATTACCGCCGGTCAAGTTCTCC
325 CATGTGCGCACACCCCCCT-GACCCCCCGATCAGCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* *
18218780 GGCGATGCTCCGACGATGGTGCCCCGACGAAAAAAAATGTGAGACCAGCACATGCCTGAGCCCAG
389 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTG-GACCAGCACATGCC-GAGCCCAG
* *
18218845 CATATGCTGC-CGCAACCCTCG---G--TG--C----A----G--T----T-CG-AT-CTTAGAT
452 CATGTGCTGCTCGCAACCCTCGTCCGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * *
18218885 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAACCGGCAAG
517 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCAAG
** *
18218950 AGGGGCGGGATGCGCAAGCTGGTGATCGGCCAGGTCCTCC-TCTGCGTGCTGCCGATCCTGCTAC
582 AGGGGCGGGATGCGCAAGCTGGTGATCGGCCAGGTCCTCCTTCTATGTGCTGCC-ATCCTGCTGC
* * *
18219014 CGCAACCCTCAG-CTCAGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGAC
646 CGCAACCCTCGGTC-CTGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * *
18219078 GAAACGAGCGGGC--G-GGCGGGCACTATG-CCGACCAGAGAGACAGGATGCGCAAGCCGTGGAT
710 AAAACGAGCGGGCGGGCGGCGGGCACTACGTCAG-CCAGAGAGACGGGATGCGCAAGTCGTGGAT
* *
18219139 CGATAGGGTGGTAGGTGGGTTTAGGCAGATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGG
774 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGG
* **
18219204 CTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATT
839 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
18219261 ACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTT
1 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTT
* * * *
18219326 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTGTTGTCATGCATAAAAA
66 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAA
*
18219391 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAA
131 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
18219456 GACACTTCAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGT
196 GACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
18219521 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA-TACCAGCACCCATCGCAAATC
261 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
** *
18219585 ATGTGCGCACA-CCCCC-GACCCCCCGATCATTGCAACCCCAATGCCGCCGGTCAGGTTCTCCGA
326 ATGTGCGCACACCCCCCTGACCCCCCGATCAGCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
*
18219648 CGATGCTCC-AGCGATGGCGCCCCGACGAAGAAAAATGTGGGACCAGCACATGCCCGAGCCCAAG
391 CGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGT-GGACCAGCACATG-CCGAGCCC-AG
* *
18219712 -ATGTGCTGCT-GCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAT
452 CATGTGCTGCTCGCAACCCTC-GTCC-GTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* *
18219775 ACTGGGAATGAACTCCGTATTCCTAAGTCAACCCACGAAACGAGCGTGCGGGGGCTCAGCCGGCA
515 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCA
* * *
18219840 AAAGGGGCGGGATGCGCAAGCTAGTGATCAGCCAGGTCCTCC-TCTGCATGCTGCTG--ATCCTG
580 AGAGGGGCGGGATGCGCAAGCTGGTGATCGGCCAGGTCCTCCTTCT--ATG-TGCTGCCATCCTG
* * *
18219902 -TGGCCACAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAA
642 CT-GCCGCAACCCTCGGTCCT-GTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18219965 CCGACGAAATGAGCGTGCGGGCGGCCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGC
705 CCGAC-AAA--A-CGAGC--G-GG-CGGGC-GGCGGGCACTACGTCAGCCAGAGAGACGGGATGC
* **
18220030 GCAAGTCGCGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
761 GCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAT
*
18220095 GCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
826 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
18220160 AGACG
891 AGACG
* * * *
18220165 ACTCGTTTTCAATTTTTCACGATTTTTGAAAC-TTTTGCTGCTT-AGGATTTTTTAAAATTTTTT
1 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTAC-GGTTCAGGATTTTTTAAAATTTTTT
* * * *
18220228 CGGAAGGAGTTTTGGCCCCAATCTTGGTAGACGTGATCCTTGTATTTTTGCTGGCATGCATAAAA
65 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAA
* *
18220293 AAATTCAGCCAAAAACTCGGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-
130 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
18220357 AGGACACTTTAACGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
195 A-GACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
18220422 GTTCTCGAGGTTTGATGAGGGATATGGGGCAAATATAAGGGCCAAGTACCAGCACCCAAT-GCAC
259 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC-ATCGCAC
* * *
18220486 ATCATGTGCGCACACCCCCCCGGCCCCCCTGATC-GCCGGAACCCCAATGCCGTCGGTCAGGTTC
323 ATCATGTGCGCACACCCCCCTGACCCCCC-GATCAG-CGGAACCCCAATGCCGCCGGTCAGGTTC
** *
18220550 TCCGACGA---T--G-C--T--T----CGACGAAGAAAAATACGGCTCCAGCACATGCTCGAGCC
386 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGG-ACCAGCACATGC-CGAGCC
* * *
18220601 CAGCATATGCTGC-CGCAACCCTCGGTCCGATCGATCTTAGACTGGGAATGAACTCCGTATGC
449 CAGCATGTGCTGCTCGCAACCCTC-GTCCGTTTGATCTTAGACTGGGAATGAACTCCGTATGC
18220663 CTAAGCCAAC
Statistics
Matches: 2012, Mismatches: 187, Indels: 155
0.85 0.08 0.07
Matches are distributed among these distances:
865 12 0.01
866 96 0.05
867 10 0.00
868 30 0.01
869 161 0.08
870 272 0.14
871 1 0.00
872 1 0.00
873 1 0.00
874 33 0.02
875 149 0.07
876 5 0.00
877 2 0.00
878 1 0.00
879 1 0.00
882 1 0.00
883 1 0.00
884 1 0.00
885 1 0.00
888 1 0.00
889 1 0.00
890 2 0.00
891 4 0.00
892 206 0.10
893 55 0.03
894 3 0.00
895 6 0.00
896 5 0.00
898 1 0.00
899 3 0.00
900 24 0.01
901 396 0.20
902 14 0.01
903 246 0.12
904 213 0.11
905 9 0.00
906 7 0.00
907 37 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTT
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCTGACCCCCCGATCAGCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGACCAGCACATGCCGAGCCCAGCATG
TGCTGCTCGCAACCCTCGTCCGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCAAGAGGG
GCGGGATGCGCAAGCTGGTGATCGGCCAGGTCCTCCTTCTATGTGCTGCCATCCTGCTGCCGCAA
CCCTCGGTCCTGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACG
AGCGGGCGGGCGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
Found at i:18219773 original size:26 final size:26
Alignment explanation
Indices: 18219744--18219794 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18219734 CCGGTTCGAT
18219744 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18219770 CTTATACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
18219795 TCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18222205 original size:26 final size:26
Alignment explanation
Indices: 18222176--18222228 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18222166 CTGGTCCGAT
*
18222176 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
18222202 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
18222228 C
1 C
18222229 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:18223119 original size:26 final size:26
Alignment explanation
Indices: 18223069--18223121 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18223059 CTGGTCCGAT
*
18223069 CTTAGACGGGGAATGAACCTTGTATG
1 CTTAGACGGGGAATGAACCTCGTATG
*
18223095 CTTAGACTGGGAATGAA-CTCCGTATG
1 CTTAGACGGGGAATGAACCT-CGTATG
18223121 C
1 C
18223122 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACCTCGTATG
Found at i:18223205 original size:892 final size:888
Alignment explanation
Indices: 18221369--18225636 Score: 5438
Period size: 892 Copynumber: 4.8 Consensus size: 888
18221359 CTCCGTATGC
* * * * * * *
18221369 CTCAGTCGGCCAGAAGGGTGGGATGCGCAAGCCAGGGATTGGTCGGGTCCCCCTCTATGTGCTAC
1 CTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA-TAGTCGAGTCCCCCTCTACGTGCTGC
* * * * *
18221434 CAATCCTGCTACTGCAACCCTCGGTCCAATCTGATCTTAGATTGGGAATGAACTCCGTATACCTA
65 CGATCCTGCTACCGCAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
18221499 AGCCAACCGACGAAATGAGCGGGCAGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGAT
130 AGCCAACCGACGAAA-CAG-AGGCCGAC-GGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGAT
* * * * *
18221564 GCGCAAGCCGTAGATTGTTAGGGTGGTAGGTGGGTTTAGGCACCTCTTCATATTTCTACATGCCA
192 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* *
18221629 ATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGG
257 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
18221694 CAAGACGACTCGTTTTGTATTTTTCACGATTTTTAAAACTTTTTACGGCTCGAGATTTTTTAAAA
322 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAA
* **
18221759 TTTTTTCGGAAGGAGTTTTGGCCCTAAACTTATTAGACGTGATCCTTGTATTCTTGTTGGCATGC
387 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTCTTGTTGGCATGC
18221824 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
452 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
18221889 CATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGG
517 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * * * *
18221954 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATAAAAGGGCCAACTACTAGCACCCATT
582 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * **
18222019 GCACATCATGTGCGCACACCCCCCCGACCCCCCGATCGTCGAAACCCCAATGTCGCCGATCAGGT
647 GCACATCATGTGCGCAAACCCCCCCGACCCCCCGATCGTCGGAACCCCAATACCGCCGATCAGGT
* * * * ** *
18222084 TTTTCGACGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTA
712 TCTCCGGCAATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTG
* * ** *
18222149 CTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGA
777 CTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
** *
18222214 ATGAACTCCGTATGCCTAAGTCAACCCACGAAAT-GATTGTGC-GTACG
842 ATGAACTCCGTATGCCTAAGTCAACCCACG-AATCGAGCGTGCAG-GCG
* * * * * * * * *
18222261 CTTAGTCGACCAGAGGGGCGGGATGCGTAAGTCAGGGATCGGTTGGGTCCCCCTCTACGTGCTGT
1 CTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT-AGTCGAGTCCCCCTCTACGTGCTGC
18222326 CGATCCTGCTACCGCAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
65 CGATCCTGCTACCGCAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
*
18222391 AGCCAACCGACGAAACGAGAGGGCCGACGGACGGACGGGCACTACGCTGGCCAGAGAGACGGGAT
130 AGCCAACCGACGAAAC-AGA-GGCCGACGG-CGGGCGGGCACTACGCTGGCCAGAGAGACGGGAT
* * * *
18222456 GCGCAAGCCGTGTATCGACAGGGTGGTAGGTGGGTTTAGGCACCTCTTCATATTTCTACATGCCA
192 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
*
18222521 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGG
257 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * ** *
18222586 CAAGACGACTCGTTTTCTATTTTTCATGATTCTTAAAAATTTTTGGGGTTCGGGATTTTTTAAAA
322 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAA
* ** * * *
18222651 TTTTTTCGGAAGGCGTTTTGGCCCCAAACTTATTAGATGGGGTCCTTGTATTCTTGTTGGCATGC
387 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTCTTGTTGGCATGC
* * *
18222716 ACAAACAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCC
452 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
18222781 CATTTTAGACACTTTAATAGCTACTTGCAGCAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
517 CATTTCAGACACTTTAATGGCTACTGGCAGC-AAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
18222846 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
581 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * * ** *
18222911 CGCACATCATGTGCGTAAACCTCCCCGGCCCCCTGATTGTCGGAAGCTTAATACCGCCGATCAAG
646 CGCACATCATGTGCGCAAACCCCCCCGACCCCCCGATCGTCGGAACCCCAATACCGCCGATCAGG
** * *
18222976 TTCTCCGGCAATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGT
711 TTCTCCGGCAATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGT
* * ** * *
18223041 GCTACCGCAGCCCTTGGTCTGGTCCGATCTTAGACGGGGAATGAAC-CTTGTATGCTTAGACTGG
776 GCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTC-CGTATGCTTAGACTGG
* * *
18223105 GAATGAACTCCGTATGCCTAAGTTAACCCATGAATCGAGTGTGCAGGCG
840 GAATGAACTCCGTATGCCTAAGTCAACCCACGAATCGAGCGTGCAGGCG
* * * *
18223154 CTCAGCCGGTCAGAGGGGCGGGATG-GCAAGCCGGGGATCAGTCGAGTCCCCCTCTACGTGTTGT
1 CTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT-AGTCGAGTCCCCCTCTACGTGCTGC
* *
18223218 CGATCCTGCTACCGCAACCCTCGATCCGATTTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
65 CGATCCTGCTACCGCAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
18223283 AGCCAACCGACGAAAC-GA-G-CG--GGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCG
130 AGCCAACCGACGAAACAGAGGCCGACGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCG
* * * * *
18223343 CAAGCCGTGGATCGATAGGGTGGTAGGTAGGCTTAGCCACATCTTCATATTCCTGCATTCCAATG
195 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
18223408 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGG-A
260 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT-GGCA
* * * * *
18223472 AGACGACTCATTTTCTATTTTTCACGATTTTTGAAATTTTTTTCTGTTC-AGGATTTTTTAAAAT
324 AGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGA-GATTTTTTAAAAT
* * * * *
18223536 TTTTTCGAAAGGAGTTTTAGCCCCAAGCTTGGTGGACGTGATCCTTGTATTTTTGTTGGCATGCA
388 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTCTTGTTGGCATGCA
* *
18223601 TAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
453 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
18223666 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
518 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
18223731 GTGAGTTCGCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
583 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* *
18223796 CACATCATGTGCGCACAGA-CCCCCGGCCCCCCCGATCGTC-GAGACCCCAATACCGCCGGTCAG
648 CACATCATGTGCGCA-A-ACCCCCCCGACCCCCCGATCGTCGGA-ACCCCAATACCGCC-G--A-
* **
18223859 GTTCTTTGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCG
706 --TC--AGGT--T-CTCCGGCAATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCG
* * * *
18223924 AGCCCAACATGTGCTAACCCCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATA
764 AGCCCAGCATGTGCT-ACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTA
* *
18223989 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAATCGAGCGTGCAGGCA
828 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAATCGAGCGTGCAGGCG
* * * *
18224050 CTAAGTCGGCCAGTGGGGTGGGATACGCAAGCCGGGG--A-TCG-G-----C-C-A------G--
1 CTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATAGTCGAGTCCCCCTCTACGTGCTGCC
* * *
18224096 G-T-C-G-T-----AACCCTC-AGTCCCATCTGATCTTAGACTGGGAATAAACTCCGTATACCTA
66 GATCCTGCTACCGCAACCCTCGA-TCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * ** * *
18224151 AGCCAACCGACAAAACAAACAGGCGGGCAGGTGGGCGAGCACTACGCCAGCCAAAGAAACGGGAT
130 AGCCAACCGACGAAAC--AGAGGCCGAC-GGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGAT
* * *
18224216 GCGCAAGCCGTGGATCGGTA-GGTGCTTGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
192 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
*
18224280 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGC
257 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * *
18224345 CAAGACAACTCGTTTTCTGTTTTTCATGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAA
322 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTT-AAA
* * * * *
18224410 ATATTTT-GGAAGGAGTTTTGGCCCGAAACTTGGTAGACATGATCCTTGCATT-TATGTTGGCTT
386 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTCT-TGTTGGCAT
*
18224473 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGAGTC
450 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
18224538 CCCATTTCAGACACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGG
515 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
** *
18224603 GGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCCAGTACCAGCACCCA
580 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * *
18224668 TCGGACATCATGTGCGCACACCCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAG
645 TCGCACATCATGTGCGCAAACCCCCCCGACCCCCCGATCGTCGGAACCCCAATACCGCCGATCAG
* * * *
18224733 GTTCTCCGGCAATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATAC-AGCACCACCCCATGCCC
710 GTTCTCCGGC-A----------ATGGTGCCCCGACGAAGAAAAATGCGA-CACCAGCACATGCCC
* * *
18224797 GAGCCTAGCATGTGCTACCGCAATCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTA
763 GAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTA
* *
18224862 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCG
828 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAATCGAGCGTGCAGGCG
* * * * ** ** * * * * ** * * * *
18224923 CTCAGCCGACGAAAGGGGCGAAATGTTCAAGCTGGGGATTGTCTAGGTCTCGTTTTGCATGCTAC
1 CTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATAGTCGA-GTCCCCCTCTACGTGCTGC
* * * * *** * *
18224988 CGATTCTGCTACCGCAAACCTTGGTCTGGTCTGATCTTAGATTGGGACTGAACTCCGTATGCCTA
65 CGATCCTGCTACCGCAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
18225053 AGCCAACCGACAAAAC-GA-G-CGA--GCGGGCGGGCACTACG-TCGGCCAGAGAGACGGGATAC
130 AGCCAACCGACGAAACAGAGGCCGACGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGC
* *
18225112 ACAATCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
194 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
18225177 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAATCCTTCACATGAAGTTTCATGGCA
259 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
*
18225242 AGACGACTCGTTTTC-ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
324 AGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* * * * *
18225306 TTTTAGGAAGGAATTTTGGCCCTAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC
389 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTCTTGTTGGCATGCAC
* * * * * *
18225371 AAAAAAATTGAGCTAAAAGCTCAAAGTGTACATGATTTTGTGACCATTTGACAAAAGTGTCCCAA
454 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
18225436 TTTCAGACACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTG
519 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
18225501 CGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGGACCCATCGG
584 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * *
18225566 ACATCATGTGCGCACACCCCCCCGATCCACCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTT
649 ACATCATGTGCGCAAACCCCCCCGA-CCCCCCGATCGTCGGAACCCCAATACCGCCGATCAGGTT
18225631 CTCCGG
713 CTCCGG
18225637 TGATGCTCCG
Statistics
Matches: 2963, Mismatches: 324, Indels: 175
0.86 0.09 0.05
Matches are distributed among these distances:
863 6 0.00
864 1 0.00
866 3 0.00
867 1 0.00
868 61 0.02
871 2 0.00
872 1 0.00
873 130 0.04
874 85 0.03
875 401 0.14
876 62 0.02
877 1 0.00
878 1 0.00
879 1 0.00
883 114 0.04
884 373 0.13
885 7 0.00
886 1 0.00
887 4 0.00
888 1 0.00
890 4 0.00
891 3 0.00
892 617 0.21
893 329 0.11
894 345 0.12
895 222 0.07
896 116 0.04
897 14 0.00
898 1 0.00
899 1 0.00
902 55 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
CTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATAGTCGAGTCCCCCTCTACGTGCTGCC
GATCCTGCTACCGCAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GCCAACCGACGAAACAGAGGCCGACGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGC
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTCTTGTTGGCATGCACAA
AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGTGCGCAAACCCCCCCGACCCCCCGATCGTCGGAACCCCAATACCGCCGATCAGGTTCTC
CGGCAATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTAC
CGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGTCAACCCACGAATCGAGCGTGCAGGCG
Found at i:18223521 original size:26 final size:26
Alignment explanation
Indices: 18223492--18223541 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
18223482 TTTTCTATTT
*
18223492 TTCACGATTTTTGAAATTTTTTTCTG
1 TTCACGATTTTTGAAAATTTTTTCTG
* *
18223518 TTCAGGATTTTTTAAAATTTTTTC
1 TTCACGATTTTTGAAAATTTTTTC
18223542 GAAAGGAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.22, C:0.10, G:0.10, T:0.58
Consensus pattern (26 bp):
TTCACGATTTTTGAAAATTTTTTCTG
Found at i:18223994 original size:26 final size:26
Alignment explanation
Indices: 18223965--18224017 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18223955 CCAGTCCGAT
18223965 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18223991 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18224017 C
1 C
18224018 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18224874 original size:26 final size:26
Alignment explanation
Indices: 18224838--18224890 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18224828 CCAGTCCGAT
*
18224838 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18224864 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18224890 C
1 C
18224891 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18228030 original size:26 final size:26
Alignment explanation
Indices: 18227994--18228046 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18227984 CCGATCCGAT
18227994 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18228020 CTTAGGCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18228046 C
1 C
18228047 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18228459 original size:26 final size:26
Alignment explanation
Indices: 18228425--18228474 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
18228415 TTTTCTATTT
*
18228425 TTCACGATTTTTGAAACTTTTTTCGG
1 TTCACGATTTTTGAAAATTTTTTCGG
* *
18228451 TTCAGGATTTTTTAAAATTTTTTC
1 TTCACGATTTTTGAAAATTTTTTC
18228475 CAAAGGTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.22, C:0.12, G:0.12, T:0.54
Consensus pattern (26 bp):
TTCACGATTTTTGAAAATTTTTTCGG
Found at i:18229640 original size:26 final size:26
Alignment explanation
Indices: 18229611--18229661 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18229601 CCGATCAGAT
18229611 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
*
18229637 CTTATACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
18229662 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:18232308 original size:876 final size:874
Alignment explanation
Indices: 18228874--18232303 Score: 4305
Period size: 901 Copynumber: 3.9 Consensus size: 874
18228864 TGTGCTGCCA
* * * *
18228874 TAACCCTCG-TTCCGGTCCGATCTTAGAGTGGGAATGAACTCTGTATGCCTAACCCAACCGACGA
1 TAACCCTCGATT-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * ** * *
18228938 AACGAACGGCCGGAAGGGCAGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGG
65 AACGAGCGGGCGGGCGGGCGGGCGGGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGG
18229003 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
18229068 GGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGT
** ** *
18229133 TTTCTATTTTTCACGATTTTTTAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGG
260 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGG
* *
18229198 ATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAACAA-TA
325 ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA-AATTC
* * * * *
18229262 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAATCGAAAAAAGTTTCCCCATTTGAGACAC
389 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACAC
* * * *
18229327 TTTAATGGCTACTGGCAGCAAACCTGTAAATTCTCAAATGCTCTTTATGAGGGTGTGAGTTCTCG
454 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
*
18229392 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTG
519 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
*
18229457 CGCACA-CCCCCGGCCCCCCGAT-GGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATG
584 CGCACACCCCCCGGCCCCCCGATCGTCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATG
* * * *
18229520 CTCC-AGCGATGGTGCTCCGGCGAAGAAAAATACGGCACCAGCACATGGCCGAGCCCAGCATGTG
649 CTCCGA-CGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTG
* * *
18229584 TTGCCGCAACCCTTGGTCCGATCAGATCTTAGACTGGGAATGAACTCCGTATCCTTATACTGGGA
713 CTGCCACAACCC----T-CG-T----TC-----C---G---G---TCCG-AT-CTTAGACTGGGA
* *
18229649 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACAGGCCAGAGGGG
752 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG-GCGGGCGCTCATC-GGCCAGAGGGG
* * * * *
18229714 CGGGATACGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGT-CTTGCCGATCTTGCTG-CTG
815 TGGGATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTCTGCGTGC-TGCCGATCCTGCTGTC-G
* * * *
18229775 TAACCCTCTG-TCCGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGG
1 TAACCCTC-GATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * *
18229839 AACGAGCGGGCGGGCGGGGGGGCGGCCACTATGTCAGTCAGAGAGACGGGATGCGCAAGCCGTTG
65 AACGAGCGGGCGGGCGGGCGGGCGGGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * *
18229904 ATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTACGTGCCAATGCCATTTTTAT
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
*** *
18229969 TTTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGT
** * *
18230034 TTTCTATTTTTCATAATTTTCAAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
260 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGG
* * *
18230099 TTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCA
325 ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
* * *
18230164 CCTAAACACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
390 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACT
*
18230229 TTAATGGCTACTGGCAGCAAAACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
455 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
* * * * * *
18230294 GGTTTGCTGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCACCACCCATTGTACATCATGCGC
520 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
18230359 GTACATCCCCCCGGCCCCCCGATCGT-CGGAACCCCAATGTCGCCTG-TCAGGCTCTCCG-GGAT
585 GCACA-CCCCCCGGCCCCCCGATCGTCCGGAACCCCAATGCCGCC-GATCAGGTTCTCCGACGAT
* * **
18230421 GCTCCGACGATGGTGCCTCGGTGAAGAGAAATGTGGCACCAGCACATGCCCAAG-CC--CA---G
648 GCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTG
* * * *
18230480 CTGCCGCAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCC-TATGCCTAAGTCAACC
713 CTGCCACAACCCTCGTTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * * * *
18230544 CATGAAATGAACATGTGGGCGCTCATCCGGCCAGAGGGGTGGGATGCACAAGCTGGGATTGGCCG
778 CACGAAACGAGC-GGCGGGCGCTCAT-CGGCCAGAGGGGTGGGATGCGCAAGCCGGGATCGGTCG
* *
18230609 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTTTTG
841 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGTCG
* * * *
18230643 TAACCCTCGA-TCTGGTTTGATCTTAGACCGAGAAAGAACTCCGTATGCCTAAGCCAACCGACGA
1 TAACCCTCGATTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
18230707 AACGA--------GCGGGCGGGTGGGCACTATGCC-GACCAGAGATACGGGATGCACAAGCCGTT
65 AACGAGCGGGCGGGCGGGCGGGCGGGCACTATGCCAG-CCAGAGAGACGGGATGCGCAAGCCGTG
*
18230763 GATCGATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
129 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * *
18230828 TGTCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATC-GCAAGACAACTC
194 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA-CGGCAAGACGACTC
* *
18230892 ATTTTTTATTTTTCACGATTTTCAAAACTTTTTACGGTT-AGAGATTTTTTAAAATTTTTTCGGA
258 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCA-AGATTTTTTAAAATTTTTTCGGA
* * * *
18230956 AGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTATATCTTTTTT-GCATGCACAAAAAAAT
322 AGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* * * * * *
18231020 TCATCTCAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTGAGAC
387 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGAC
* *
18231085 ACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCT
452 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * * * *
18231150 CAAGGTTTGATGAGGGATAAGTGGCCAAAATAAGGGCCAAGTACCAGTACCCACCACACATCATG
517 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* ** * *
18231215 TGTGCACACCCCCCAGGCACCTTCGATC-ACCGGAACCCCAATGCCGTCGATCAGGTTCTCCGAC
582 TGCGCACACCCCCC-GGC-CCCCCGATCGTCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGAC
* * ** * *
18231279 GATGCTTCGGCGATGGTGCCTTGG-CAATGAAAAATACGGCACCAGCACATGCACAAGCCCAGCA
645 GATGCTCCGACGATGGTGCCCCGGTGAA-GAAAAATACGGCACCAGCACATGCCCAAGCCCAGCA
* * * *
18231343 TGTGCTGCTACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTC
709 TGTGCTGCCACAACCCTCGTTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
18231408 AAACAACGAAACGAGCGTGCAGGCACTCAGTCGGCCAGAGGGGTGGGATGCGCAAGCCGGGATCG
774 AACCCACGAAACGAGCG-GCGGGCGCTCA-TCGGCCAGAGGGGTGGGATGCGCAAGCCGGGATCG
* *
18231473 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGTCG
837 GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGTCG
* * * * *
18231511 CAACTCTCGATTCGGTCTGATCTTAGACTGGGAAGGAACTCCGTATGCCTAAGCCAATCGATGAA
1 TAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * * * *
18231576 ACGAGTGGGTGGGCGGGCGGGCGGGCACCAAGCCGGCCAGAGAGATGGAATACGCAAGCCGTGGA
66 ACGAGCGGGCGGGCGGGCGGGCGGGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
18231641 TCGATAGGGTGGTAGGTCGGTTTAGGCACATCTTCATATTT-T-TATGTCCCAATGCCATTTTTA
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG--CCAATGCCATTTTTA
* *
18231704 TGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCACGGCAAGACGACTCG
194 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCG
* ** *
18231769 TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTTC-GAA
259 TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAA-TTTTTTCGGAA
* *
18231833 GGTTTTTTGAACCCC-AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
323 GGATTTTTG-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* **
18231897 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTTTCCATTTCAGAC
387 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGAC
* *
18231962 ACTTTAATGGCAACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTCT
452 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
18232027 CGAGATTTGATGAGGGATA-GGGGCCAATATAACGGCCAAGTACCAGCACCCATCGCACATCATG
517 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
18232091 TGCGCACACCCCCCGGCCCCCCGATCGTCC-GAACCCCAATGTCGTCGGTCAGG-T-TCCGACGA
582 TGCGCACACCCCCCGGCCCCCCGATCGTCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGA
* * * *
18232153 TGCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCATCACATGCCCGAGCCTAGCATGT
647 TGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGT
* * * * **
18232218 GCTGCCATAACCCTCGTTCTGGTCCAATCTTAGAGTGGGAATGAACTCCGTATGCCTAACCCAAC
712 GCTGCCACAACCCTCGTTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
*
18232283 CGACGAAACGAGCGGCCGGGC
777 CCACGAAACGAGCGG-CGGGC
18232304 AGGCAGGTGG
Statistics
Matches: 2204, Mismatches: 274, Indels: 131
0.84 0.11 0.05
Matches are distributed among these distances:
858 6 0.00
859 200 0.09
860 295 0.13
861 46 0.02
862 2 0.00
864 2 0.00
867 45 0.02
868 246 0.11
869 61 0.03
870 21 0.01
871 3 0.00
872 134 0.06
873 3 0.00
874 31 0.01
875 8 0.00
876 291 0.13
877 162 0.07
878 1 0.00
881 1 0.00
886 2 0.00
891 1 0.00
892 1 0.00
896 12 0.01
899 2 0.00
900 2 0.00
901 530 0.24
902 49 0.02
903 45 0.02
904 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (874 bp):
TAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGGGCGGGCGGGCGGGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGA
TTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCGGCCCCCCGATCGTCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCT
CCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTG
CCACAACCCTCGTTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGGCGGGCGCTCATCGGCCAGAGGGGTGGGATGCGCAAGCCGGGATCGGTCGGGTCC
CCCTCTGCGTGCTGCCGATCCTGCTGTCG
Found at i:18233905 original size:26 final size:26
Alignment explanation
Indices: 18233867--18233919 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18233857 CCAGTCTGAT
*
18233867 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18233893 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18233919 C
1 C
18233920 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18234265 original size:904 final size:896
Alignment explanation
Indices: 18232217--18236550 Score: 5376
Period size: 890 Copynumber: 4.9 Consensus size: 896
18232207 GCCTAGCATG
* * ** * *
18232217 TGCTGCCATAACCCT-CGTTCTGGTCCAATCTTAGAGTGGGAATGAACTCCGTATGCCTAACCCA
1 TGCTGCCACAACCCTCCG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
18232281 ACCGACGAAACGAGCGGCCGGGCAGGCAGGTGGGCACTACGCCAGCCAGAGAGACGGGATGCGCA
65 ACTGACGAAACGAGCGGGCGGGCGGGCGGGTGGGCACTACGCCAGCCAGAGAGACGGGATGCGCA
* *
18232346 AGCCGTGGGTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* *
18232411 ATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
195 ATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
18232476 CGACTTGTTTTCTATTTTTCACGATTTTTTAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
260 CGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* *
18232541 TCGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTTTTTTTTTTGGCATGCACAAA
325 TCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* * * *
18232606 AACAA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAATCGAAAAAAGTTTCCCCATT
390 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
18232670 TTAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTATGAGGGTGTG
455 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
18232735 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
520 AGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* **
18232800 ATCATGTGCGCACA-CCCCCCGGCCCCTCCGATGGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
584 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * * **
18232864 CCGACGATGCTCCAGCGATGGTGCTCCGGCGAAAAAAAATATGGCACCAGCACATGGTCGAGCCC
649 CCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCC
*
18232929 AGCATGTGTTGCCGCAACCCTCGATCTGATCAGATCTTAGACTGGGAATGAACTCCGTATCCTTA
714 AGCATGTGCTGCCGCAACCCTCG-TC-G-TC-GATCTTAGACTGGGAATGAACT-CGTAT-CTTA
* * * * ** *
18232994 TATTGGGAATGAACTCCGTAT-CCTATGTCAA-CCATGAAACGAGCGTGCGAGCTCTCTGCCGGC
773 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAACAGGC
* * * ** *
18233057 CAGAGGAGCGGGATGCGCAAGCCGAGGATCTGTTGGGTCCACCTCTGCATGCTACCGATCC
838 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTG--TGCTACCGATCC
* * *
18233118 TGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCCGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18233183 -TCGATGAAATGAGCGGGCGGACGGGCGGGTGGGTACTACGCC-GCCCAGAGAGACGGGATGCGC
66 CT-GACGAAACGAGCGGGCGGGCGGGCGGGTGGGCACTACGCCAG-CCAGAGAGACGGGATGCGC
* ** * * * *
18233246 AAGCCATGGATAAATTGGGTGGTAGGCGGGTTTCA-TCACATCTTCATATTTCTGCTTGCCAATG
129 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT-AGGCACATCTTCATATTTCTGCGTGCCAATG
*
18233310 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
193 CCATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * * * * *
18233375 GATGACTCGTTTTCTTTTTTTCATGATTTTTAAAATTTTTTTCGATTTGGGAGTTTTTAAAATTT
258 GACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
*
18233440 TTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
323 TTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
* *
18233505 ACAAAAAATT-AGCTCAAAACTC-AGAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCC
388 A-AAAAAATTCAGCTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * * *
18233568 CATTTCAGACACTTTAATGGCTACTGACAGCAAACCTATAAAATCTCAAATTCTCTTTAAGGGAG
451 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
18233633 TGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGACCAATATAAAGGTCAAGTACCAGCACCCATC
516 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATC
* *
18233698 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGTCGCCGGTTAGG
580 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGG
* * * * *
18233763 TTCTCCGACGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATACGGCACCATCACATGCCCAA
645 TTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGA
18233828 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
710 GCCCAGCATGTGCTGCCGCAACCCTC-GT-C-GTC-GATCTTAGACTGGGAATGAACT-CGTAT-
* * *
18233893 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
769 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAAC
* ** * *
18233958 AGGCCAGAGGGGCGGGATGCGTAAGTTGGGGATCGGCCGGGT-CCCCTCTGTGTCTTGCCGATCT
834 AGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTG-C-TACCGATCC
* ** ** * * *
18234022 TGCTACTGCAACCCTCCGTCCAATCTAATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGCCACAACCCTCCGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* **** * * *
18234087 CTGACGAAACGAGCGGGCGGGCGGGGGGGCATCCACTATGTCAGTCAGAGAGACGGGATGCGCAA
66 CTGACGAAACGAGCGGGCGGGCGGGCGGGTGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAA
* *
18234152 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTACGTGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
*
18234217 TTTTTATTTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
196 TTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** *
18234282 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTTGAGATTTTTTAAAATTTTTT
261 GACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * * * *
18234347 CGGAAGGTTTTTTGACCCCAGACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCAC-AAA
326 CGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
*
18234411 AAAATTCAGCTAAACACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
391 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
18234476 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
456 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * * *
18234541 GTTCTCGAGGTTTGGTGAGGGATATGAGGCCAATATAAGGGCCAGGAACCACCACCCATCTCACA
521 GTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
18234606 TCATGCGCGTACACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCGATCGGAACCCTAATGTCGC
585 TCATGTGCGCACA-CCCCCCCGGCCCCCCCGA---TC---A---C---CGGAACCCCAATGCCGC
* * * * * *
18234671 CTGTCAGGCTCTCTGGCCATGCTCCGACGATGGTGCCCCGATGAAGAAAAATATGGCACCAGCAC
637 CGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCAC
* *
18234736 ATGCCCAAGCCCAGCATGTGCTACCGCAA-CCT--TCG--G-TC-----C--GG--T---CT-G-
702 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCGTCGATCTTAGACTGGGAATGAACTCGT
* * * *
18234781 ATCTTAGACTGGGAATGAACTCC-TATGCCTAAGTCAACCCATGAAATGAACGTGTGGGCGCTCA
767 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCA
* * * *
18234845 TCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGAT
832 ACAGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCT--GTGCTACCGAT
18234910 CC
895 CC
* *** * * *
18234912 TGCTTCTGTAACCCT-CGATCTGGTCTGATCTTAGACCGAGAAAT-AACTCCGTATGCCTAAGCC
1 TGCTGCCACAACCCTCCG-TCCGGTCTGATCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCC
* ** * * * *
18234975 AACCGACGAAACGAGCGGGCGAACGGGCGGGTGGGCACTATGCCAACCAGAGATACGGGATGCAC
64 AACTGACGAAACGAGCGGGCGGGCGGGCGGGTGGGCACTACGCCAGCCAGAGAGACGGGATGCGC
* * ** * *
18235040 AAGCCGTAGATCGATACGGTGGTAGGTGGGTTTACACACATCTTCATATTTTTGCTTGCCAATGC
129 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* *
18235105 CATTTTTATGTCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAG
194 CATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
18235170 ACAACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGCTAGAGATTTTTTAAAATTTT
259 ACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * * *
18235235 TTCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTATATATTTTTTT-GCATGCA-T
324 TTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTTTTGGCATGCACA
* * * *
18235298 AAAAAAATTCATCTCAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
388 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
18235363 TTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTG
453 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
18235428 TGAGTTCTCGAGGTTTGATGAGGGATAAGTGGCCAAAATAAGGGCCAAGTACCAGTACCCACCGC
518 TGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
18235493 ACATCATGTGCGCACACCCGCCCAGGCCCCCCCGATCACTGAAACCCCAATGCCGTCGGTCAGGT
582 ACATCATGTGCGCACACCC-CCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGT
* ** *
18235558 TCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAG
646 TCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAG
* * * *
18235623 CCCAACATGTGATGCAGTAA-CCT--TCG--G-TC-----C--GG--T---CT-G-ATCTTAGAC
711 CCCAGCATGTGCTGCCGCAACCCTCGTCGTCGATCTTAGACTGGGAATGAACTCGTATCTTAGAC
* * *
18235668 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCACTCAGCCA-ACCA
776 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCA-ACAGGCCA
* * * **
18235732 GAGGGGCGGGATGCGCAAGTCGGGGATCGACCTGGTCCCCCTCTACGTGCTGTCGATCC
840 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCT--GTGCTACCGATCC
* * * *
18235791 TGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCCGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18235856 CTGACGAAACGAACGGGCAGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAA
66 CTGACGAAACGAGCGGGCGGGCGGGCGGGTGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAA
* * *
18235921 GCCGTGGATCGATAGGTTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* * *
18235986 TTTTTATTTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAT
196 TTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
18236051 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
261 GACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * * * *
18236116 TGGAAGGA--TTT----------TTGGTAGATGTGATCCCTGTATTTTTGTTGGCATGCA-TAAA
326 CGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
*
18236168 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
391 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
18236233 CAGATACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
456 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
18236298 GTTATCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACGCACA
521 GTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * **
18236363 TCATGTCCGCACACCAACCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
585 TCATGTGCGCACACC-CCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCT
** * *
18236427 CCGGCGATGCTCCGGCGAT-GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATTCTCGAGCCC
649 CCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCC
* * *
18236491 AACATGTGCTGCCACAACCCTCGATCTAGTCTGATCTTAGACTGAGAATGAACTTCGTAT
714 AGCATGTGCTGCCGCAACCCTCG-TC--GTC-GATCTTAGACTGGGAATGAAC-TCGTAT
18236551 GCCTAAGCCA
Statistics
Matches: 2988, Mismatches: 370, Indels: 161
0.85 0.11 0.05
Matches are distributed among these distances:
865 53 0.02
866 64 0.02
867 228 0.08
869 2 0.00
871 1 0.00
874 1 0.00
875 2 0.00
877 3 0.00
878 137 0.05
879 374 0.13
880 3 0.00
881 1 0.00
882 1 0.00
884 2 0.00
887 3 0.00
888 1 0.00
889 80 0.03
890 561 0.19
891 14 0.00
892 4 0.00
894 2 0.00
897 1 0.00
899 2 0.00
900 1 0.00
901 348 0.12
902 195 0.07
903 356 0.12
904 379 0.13
905 58 0.02
906 2 0.00
907 3 0.00
910 2 0.00
911 1 0.00
912 1 0.00
913 1 0.00
915 3 0.00
916 98 0.03
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
TGCTGCCACAACCCTCCGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CTGACGAAACGAGCGGGCGGGCGGGCGGGTGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
TTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
CGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
GTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
GGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAG
CATGTGCTGCCGCAACCCTCGTCGTCGATCTTAGACTGGGAATGAACTCGTATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAACAGGCCAGAGGGG
CGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGCTACCGATCC
Found at i:18237269 original size:26 final size:26
Alignment explanation
Indices: 18237240--18237292 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18237230 CTGGTCCGAT
*
18237240 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
18237266 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
18237292 C
1 C
18237293 GTAAGGCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:18239464 original size:732 final size:731
Alignment explanation
Indices: 18238073--18239485 Score: 2141
Period size: 732 Copynumber: 1.9 Consensus size: 731
18238063 GCGGGCAGGC
* *
18238073 GGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
1 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTT
** *
18238138 TAGGCACATCTTCATATTTCTACGTGCCAATTTCATTTTTATGGCTTGTAAATTCATACAACAGT
66 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTGTTATGGCTTGTAAATTCATACAACAGT
*
18238203 CCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAA
131 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAA
* * *
18238268 AACTTTTTGCCATTCGAGATTTTTTAATATTTTTTCGAAGGGGTTTTTACCCCAAACTTGGTAGA
196 AACTTTTTACCATTCGAGATTTTTTAAAATTTTTTCGAAGGGATTTTTACCCCAAACTTGGTAGA
* * *
18238333 CGTCATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGA
261 CGTCATCCTAGTATTTTTGTTGCCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGA
* *
18238398 TTTTGTGACCATTTGAAAAACGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
326 TTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * * *
18238463 GTAAAATCTCAAATGCTCTTTATGATGGTGTGAGTTCTTGAGGTTTGATGAGTGATAGGGGGCCA
391 GTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCA
* * *
18238528 ATATAAGGGCCAAGTACCAGCATCCATCGCACATCATGGGCGCACACCCCCCCTCCGGCCCCCCG
456 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCACA-CCCCCCTACGGCCCCCCG
* * * * * * * *
18238593 ATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGTTCTGACGATGGTGCCCCGACG
520 ATCATCGGAACCCCAATGCCGTCGATCAGGTTCTCCAGCGAAGCTCCGACGATGGTGCCCCGACA
* **
18238658 AAGAAAAATGAGGCACCAGCACATGCCTGAGCCCAACATGTACTGCCGTAACCCTCGGTCCGGCC
585 AAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAACATGTACTGCCACAACCCTCGGTCCGGCC
18238723 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAATCCAACCAACAAAACGAGCGGGAGGGCGGA
650 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAATCCAACCAACAAAACGAGCGGGAGGGCGGA
18238788 CGGGCGGGCGGGTGGGT
715 CGGGCGGGCGGGTGGGT
* *
18238805 GGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTT
1 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTT
* * * **
18238870 TAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTGTTATGGCTTGTAGATTCATACAATGGT
66 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTGTTATGGCTTGTAAATTCATACAACAGT
* * * * **
18238935 CCCTTAAGCTTTCATGTGAAGTTTCATGGCGAGACGACTTGTTTTCTATTTTTCATGATTTTTGA
131 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAA
** * *
18239000 AACTTTTTTACGGTTCG-GCATTTTTTAAAATTTTTTCGGAA-GGATTTTTGGCTCCAAACTTGG
196 AAC-TTTTTACCATTCGAG-ATTTTTTAAAATTTTTTC-GAAGGGATTTTT-ACCCCAAACTTGG
* *
18239063 TAGACGTGATCCTAGTATTTTTGTTGCCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
257 TAGACGTCATCCTAGTATTTTTGTTGCCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTAC
* * *
18239128 AAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACATTTTAATGGCTACTGGTAGTAA
322 AAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
18239193 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGATATGGG
387 ACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGCTTTGATGAGGGATAGGGG
18239258 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCACA-CCCCC-ACGGCCCC
452 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCACACCCCCCTACGG-CCC
* *
18239321 CCCGATCATCGGAACCCCAATGCCGTCGATCAGGTTCTCTAGCGAAGCTCCGGCGATGGTGCCCC
516 CCCGATCATCGGAACCCCAATGCCGTCGATCAGGTTCTCCAGCGAAGCTCCGACGATGGTGCCCC
* * ** * * *
18239386 GGCAAAGAAAAATGTGGCACCAGCACATGCCCGAGTGCAGCATGTGCTGCCACAACCCTCGGTCT
581 GACAAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAACATGTACTGCCACAACCCTCGGTCC
*
18239451 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
646 GGCCCGATCTTAGACTGGGAATGAACTCCGTATGC
18239486 TTAGACTAGG
Statistics
Matches: 609, Mismatches: 67, Indels: 10
0.89 0.10 0.01
Matches are distributed among these distances:
731 3 0.00
732 332 0.55
733 34 0.06
734 240 0.39
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.27
Consensus pattern (731 bp):
GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTGTTATGGCTTGTAAATTCATACAACAGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAA
AACTTTTTACCATTCGAGATTTTTTAAAATTTTTTCGAAGGGATTTTTACCCCAAACTTGGTAGA
CGTCATCCTAGTATTTTTGTTGCCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCACACCCCCCTACGGCCCCCCGA
TCATCGGAACCCCAATGCCGTCGATCAGGTTCTCCAGCGAAGCTCCGACGATGGTGCCCCGACAA
AGAAAAATGAGGCACCAGCACATGCCCGAGCCCAACATGTACTGCCACAACCCTCGGTCCGGCCC
GATCTTAGACTGGGAATGAACTCCGTATGCCTAATCCAACCAACAAAACGAGCGGGAGGGCGGAC
GGGCGGGCGGGTGGGT
Found at i:18239488 original size:26 final size:26
Alignment explanation
Indices: 18239459--18239511 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18239449 CTGGTCCGAT
*
18239459 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18239485 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18239511 C
1 C
18239512 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18240386 original size:26 final size:26
Alignment explanation
Indices: 18240357--18240409 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18240347 CTGGTCCGAT
*
18240357 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18240383 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18240409 C
1 C
18240410 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18241290 original size:26 final size:26
Alignment explanation
Indices: 18241261--18241313 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18241251 CCAGTCTGAT
*
18241261 CTTAGACTGGGAATGAACT-CTGTATG
1 CTTAGACTGGGAATCAACTAC-GTATG
18241287 CTTAGACTGGGAATCAACTACGTATG
1 CTTAGACTGGGAATCAACTACGTATG
18241313 C
1 C
18241314 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTACGTATG
Found at i:18242946 original size:900 final size:898
Alignment explanation
Indices: 18238707--18243966 Score: 7159
Period size: 898 Copynumber: 5.8 Consensus size: 898
18238697 GTACTGCCGT
* * * *
18238707 AACCCTCGGTCCGGCCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAATCCAACCAACAAAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
18238772 CGAGCGGGAGGGCGGACGGGCGGGCGGGTGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCG
66 CGAGC------G-GG-CGGGCGGGC--------GGGCACTACGCCGGCCAGAGAGACGAGATGCG
* * *
18238837 TAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATG
115 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
* * * *
18238902 CCATTGTTATGGCTTGTAGATTCATACAATGGTCCCTTAAGCTTTCATGTGAAGTTTCATGGCGA
180 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA
*
18238967 GACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTTACGGTTCGGCATTTTTTAAAATT
245 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTTACGGTTCGG-ATTTTTTAAAATT
* * * * * *
18239032 TTTTCGGAAGGATTTTTGGCTCCAAACTTGGTAGACGTGATCCTAGTATTTTTGTTGCCATGCAC
308 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAC
*
18239097 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCA
373 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
18239162 TTTCAGACATTTTAATGGCTACTGGTAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
438 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
18239227 TGAGTTCTCGAGCTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
503 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * ** *
18239292 ACATCATGCGCGCACACCCCCACGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGATCAGGTT
568 ACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTT
* * ** *
18239357 CTCTAGCGAAGCTCCGGCGATGGTGCCCCGGCAAAGAAAAATGTGGCACCAGCACATGCCCGAGT
633 CTCTAGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGC
*
18239422 GCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
698 CCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
18239487 TAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCTG
763 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * *
18239552 GCCAGAGGGGCAGGATACGCAAGCTGGGGATCAGTCGGGTCCCCCTATACGTGCTGCCGATCCTG
828 GCCAGAGGGGCGGGATGCGCAAGC-GGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTG
*
18239617 CTACTGC
892 CTACCGC
* ** * * *
18239624 AACCATCCATCCGGTCAGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * *
18239689 TGAGCAGCCGGGCGGGCGGGCACTATGCCGGCCAGAGAGAC-AGGATGCGTAAGCCGTGGATCGA
66 CGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGA-GATGCGCAAGCCGTGGATCGA
* *
18239753 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC-GACATGCCAATGCCATTTTTCTGGCT
130 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-CGTGCCAATGCCATTTTTATGGCT
*
18239817 TGTAAATTCATACAACGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
194 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* *
18239882 TATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGTATTTTTTAAAATTTTTTCGAAAGGAGTT
259 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGG-ATTTTTTAAAATTTTTTCGGAAGGAGTT
* * ** *
18239947 TTGACCCCCAAACTTGGTAGAAATGATTGTT-TTTTTTTTTTGGCATGCACAAAAAAATTCAGCT
323 TTG-GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
* * * *
18240011 AAAAACTCGAAGTGTACAAGATTTTGTGAACAATTAAAAAAAGTGTCCCCATTTCAAACACTTTA
387 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
18240076 ATGGCTACTGGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGT
452 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
18240141 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCA
517 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * *
18240206 CA--CCCCCGACCCCCCCGATCGTCGAAACCCCAATGCCGCCGATCAGGTTCTCTGGCGATGCTC
582 CACCCCCCCGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCTAGCGATGCTC
* *
18240269 CAGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
647 CGGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
*
18240334 CACAACCTTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
712 CACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * **
18240399 ACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGAAGCGGG
777 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * * * * *
18240464 ATGTGCAAATCGGGGATCGGCCGGGTCCCCCTTTACATGCTGTCAATCCTGCTGCTGC
842 ATGCGC-AAGCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGC
* ** * * * *
18240522 AACCCTCAGTCCAATCCAATCTTACATTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA
* * * * *
18240587 ACGAACGGGTGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGAGACGTGCAAGCCGTGGA
65 ACG-A---GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGA
* **
18240652 TCGATAGGGTGGTACGTGGGTTTAGGCACATCTTTGTATTTCTGCGTGCCAATGCCATTTTTATG
126 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
*
18240717 GCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
191 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
*
18240782 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAGTTTTTTCGGAAGGA
256 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGA
* *
18240847 GTTTTAGCCCCAAAATTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
320 GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* *
18240912 CTAGAAACTCGAAGTGTACAAGATTTAGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
385 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
18240977 TAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
450 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
18241042 GTTTGATG-GGAGATAGGGGGCCAATATACGGGCCAAGTACCAGCACCCATCGCACATTATGTGC
515 GTTTGATGAGG-GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * * * *
18241106 GCACAACCCCCCGACCCCACCGATCGTCAGAA-CCCAATGCCACCGGTCAGGTTCTC-CGACGAT
579 GCACACCCCCCCGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCTAG-CGAT
* * * * * *
18241169 GCTCCGGTGATGATGCCCTGGCGAAGAAAAATGCGGCACTAGTACATGCCCGAGCCCAGCATGTG
643 GCTCCGGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * ** ** * *
18241234 CTACCGCAACCCTTTGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGA
708 CTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* *
18241299 ATCAACTACGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
773 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * * * *
18241364 TGGGATGCGGAAGCTGGAGATCGGCTGGGTCCCCCTCTGCATGCTGCCGATCCTGCTATCGT
838 CGGGATGCGCAAGC-GGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGC
* * * *
18241426 AACCCTCGGCCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGGCTAAGCCAACCGACGAAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * *
18241491 CGAGCGGGAGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGAGATGCGTAAGCCGTGGATCGAT
66 CGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGAT
* * *
18241556 AGGGTGGTACGTGGGTTTAGGCACATCTTCATATTTCAGCGTGCCAATGCCATTTTTGTGGCTTG
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
*
18241621 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT-TA
196 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
*
18241685 TTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAGTTTTTTCGGAAGGAGTTTT
261 TTTTTCATGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * *
18241750 AGCCCCAAAATTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAGA
325 GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
*
18241815 AACTCGAAGTGTACAAGATTTAGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
390 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
18241880 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
455 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
** * *
18241945 ATGAGGGATTTGGGGCCAATATAAGGACCAAGTACCAGCACCCATCGCAAATCATGTGCGCACAC
520 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * ** * *** * * *
18242010 CCCGCCGGCCCCTTCGATCGCTGGAACAGTAATGCCGCCGATCAGGTTCTTTGGCGATGCTCCAG
585 CCCCCCGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCTAGCGATGCTCCGG
*
18242075 CGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAC
650 CGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAC
* * * * * *
18242140 AACCCTCGATCTGCTCCGATCTCAGACTAGGAATGAACTCCGTATGCTTAGAGTAGGAATGAACT
715 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * * *
18242205 CTGTATGCCTAAGTCAACCCACTAAACGAGCGTGCGGGTGCTTAGCCGGCCAAAGGGGCAGGATG
780 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * *
18242270 CGTAAGTCGGGGATTC-GTCGGGTCCCCCTCTACGTACTGCTGATCCTGCTACCGC
845 CGCAAG-CGGGGA-TCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGC
* * *
18242325 AATCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTACGCCAACCGACGAAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
18242390 CGAGCGGGCGGGCGGGCGGGTACTATGCCGGCCAGAGAGACGTGATGCGCAAGCCGTGGATCGAT
66 CGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGAT
**
18242455 AAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATTTCTT
131 -AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* * * *
18242520 GTAAATTGATACAATGGTCCCATAAGCCTTCATGTGAAGTTTCATGGGAAGACGACTCATTTTCT
195 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * *
18242585 ATTTTTCATGATTTTTAAAACCTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTT
260 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * **
18242650 TGGCCCCAAACCTGATAGAGGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
324 TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
* * *
18242715 AAACTCAAAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAAT
389 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
18242780 GGCTA-TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
454 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
18242844 GATGAGGGAAATGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
519 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
** *
18242909 CCCCCCCGACCCCATCGATCGCCGGAACCCCAATGCCG-C--T--GG---TC-AG-G-TTCTCCG
584 CCCCCCCGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCTAGCGATGCTCCG
* * * * * * * *
18242963 GCGATGGTTCCTCGACGAAGAAAAATACAGCACCAGCACATGCCTGAGTCCAGCATGTGCTGTCG
649 GCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCA
* *** * * *
18243028 CAACCCTCAGTCCAATCCGATCTTAGAGTGGGAATGAACTCTGTATGCTTAGACTGGGAACGAAC
714 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * *
18243093 TCCGTACGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGTGGGAT
779 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * * ** ** *
18243158 GCGGAAGCCGGGGATCGGCCGGGTCCCCCTCAATGTGCTACCAATCCTATTGTCGT
844 GCGCAAG-CGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGC
* * * *
18243214 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCTTATGCGTAAGCCAACCGACGAAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * *
18243279 CGA--------GTGGGCGGGCACTACGCCAGCTAGAGAGACGGGATGCGCAAGCCGTGGATTGAT
66 CGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGAT
*
18243336 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATATTTTGCGTGCCAATG-CATTTTTATGGCTT
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT-TTCTGCGTGCCAATGCCATTTTTATGGCTT
* *
18243400 GAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
195 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * * * *
18243465 ATTTTTCACGATTTTTGAAACTCTTTGCGATTCGAGATTTTTCAAAATTTTTTTGGAATGAGTTT
260 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * * *
18243530 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTCTTGTTGGCATGCACAAAACAATTTC-GCTA
324 TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAA-AAATTCAGCTA
*
18243594 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAA
388 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * * * *
18243659 CGGCTACTGGCAGCAATCTTGTAAAATCTGAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGAT
453 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
18243724 TGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACTAGCACCCATCGCACATCATGTGCGCAC
518 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * **
18243789 A-ACCCCCGACCCCCCCGATCACCGGAACCCCAATGCCGCC-AGTCAGGTTCTCCAATGATGCTC
583 ACCCCCCCGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGA-TCAGGTTCTCTAGCGATGCTC
* * * * * *
18243852 CGGTGATGGTGCCACGGTGAAGAAAAATACGGCACCAGCACATGCCCAAGCCTAGCATGTGCTAC
647 CGGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * *
18243917 CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
712 CACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
18243967 CTAAGCCAAC
Statistics
Matches: 3862, Mismatches: 440, Indels: 108
0.88 0.10 0.02
Matches are distributed among these distances:
880 313 0.08
881 181 0.05
883 1 0.00
885 2 0.00
888 4 0.00
889 272 0.07
890 2 0.00
891 102 0.03
892 1 0.00
895 2 0.00
897 1 0.00
898 662 0.17
899 537 0.14
900 528 0.14
901 384 0.10
902 25 0.01
903 453 0.12
904 299 0.08
905 22 0.01
909 9 0.00
910 1 0.00
917 61 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCATGATTTTTGAAACTTTTTACGGTTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCCGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCTAGCGATGCTCCGGC
GATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACA
ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
GCAAGCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGC
Found at i:18245607 original size:26 final size:26
Alignment explanation
Indices: 18245569--18245621 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18245559 CTGCTCTGAT
* *
18245569 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
*
18245595 CTTAAACTAGGAATGAACTCTGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
18245621 C
1 C
18245622 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:18246180 original size:906 final size:903
Alignment explanation
Indices: 18243916--18249200 Score: 7626
Period size: 907 Copynumber: 5.8 Consensus size: 903
18243906 GCATGTGCTA
* *
18243916 CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
1 CCGCAACCCTCGGTCTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
* * * * * * * * *
18243981 GAAATGAGTGGGTGGGCGGGTGGGCGGGCATTACGCCTGCCAGAGAGATGGGAAGCGCCAGCCGT
66 GAAACGAGCGGGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
18244046 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
131 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* * *
18244111 ATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACGTGAAGTTGCATGGCAAGACGACTC
196 TTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* ** * *
18244176 ATTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAA
261 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAA
*
18244241 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGTCATGCACAAAAAAAAA
326 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCAC-AAAAAAAA
* *
18244306 CCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGAC
389 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
18244371 ACTTTAATGGCTACTTGCAGCAAACATGTAAAATCTGAAATGCCCTTTAAGGAGGTGTGAGTTCT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGAGGTGTGAGTTCT
*
18244436 CGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGCCAAGTACCAGCACACATCGCACATCATG
519 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
** * *
18244500 TGCGTACACGCCCCCGTC-GACCCCTTTGATCGTCGGAATCCCAATACCGCCGGTCAGGTTCTCC
584 TGCGTACAC-CCCCCGTCAG-CCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * *
18244564 GGTGATGCTCCGACGATGGTGCCCCGCCGATGAAAAATGCGGCACCAAGCACATGCCCAAGCCCA
646 GGTGATGCTCCGACGATGGTGCCCCGACGACGAAAAATGCGGCACC-AGCACATGCCCGAGCCCA
* * * * * *
18244629 GTATGTGCTGCCGTAACACTCGGACTGGTCTGATCTTGGACTGGGAATGAAATTCGTATGCTTAA
710 GCATGTGCTGCCGTAACCCTCGGTCT-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAA
* * *
18244694 ACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATAAGCGTGCAGGCGCTCAG-CGACC
774 ACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCC
* ** * * * *
18244758 AGAGGGGCGCGATGCTTAAGCCAGGGATTGATCGGGTCCCACTCTACGTGCTGCCAAGCCTACTG
839 AGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCACTCTGCGTGCTGCCGAGCCTACTG
* * * *
18244823 CTGCAACCCTCAGTCTAGTCTGATCATAGACTCGGAATGAACTCCGTATGCCTAAGCCAACCGAT
1 CCGCAACCCTCGGTCTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
* * * * * *
18244888 GAAACAAACGGGCGGGTGGGAGGGCGGGCACTATGCCAGCCAGAGAGATGGGATGCGCAAGTCC-
66 GAAACGAGCGGGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG-CCG
* * *
18244952 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATTTTCATATTTTTGCGTGCCAATGCCATTTT
130 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTT
* *
18245017 TTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCACGGCAAGACGAC
194 TTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
18245082 TCGTTTTCTATTTTTCATGATTTTCGAAAGTTTTTGCGGTTCGTGATTTTTTAAAATTTTTTCGA
259 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGA
* *
18245147 AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT-TTCTTTTTGGGCATGCATAAAAAA
324 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-TTTTT-GGCATGCACAAAAAA
* *
18245211 AATCAGCTAAAAACTCAAAGTGTACGAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAG
387 AATCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
18245276 ACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
452 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGAGGTGTGAGTT
* * * * * **
18245341 CTTGAGGTTTGATGAGGGCTAGGGGGCCAATATAAGGGCTAAGTACTAGCACCCATCACACATTT
517 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
18245406 TGTGCGTACACCCCCCGTCAGCCCCCCCGATCGTCAGAACCCCAATGTCGCCGGTCAGGTTCTCC
582 TGTGCGTACACCCCCCGTCAG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *
18245471 GATGATGCTCCGACGATGGTGCCTCGATGACGAAAAATGCGGCACCAGCACATGCCCGAGCCCAA
646 GGTGATGCTCCGACGATGGTGCCCCGACGACGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
18245536 CATGTGCTGCCGTAACCCTCGGTCTGCTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAA
711 CATGTGCTGCCGTAACCCTCGGTCTG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAA
* *
18245601 CTAGGAATGAACTCTGTATGCCTAACTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCA
775 CTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCA
* * * *
18245666 AAGGGGCGGGATGCGCAAGCCGGGGATCGACCGAGTCCCACTCTGTGTGCTGCCGAGCCTACTG
840 GAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCACTCTGCGTGCTGCCGAGCCTACTG
* ** * *
18245730 CCGCAACCCTCGGTCTGGTCTGATCATAGATTATGAATGAACTCCGTATGCCTAAGCCAACTGAC
1 CCGCAACCCTCGGTCTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
* * * * * *
18245795 AAAACGAGCAGGCGGTCGAGAGGTCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
66 GAAACGAGCGGGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* *
18245860 GAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATGTTT
131 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
*
18245925 TTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGACGACTC
196 TTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
18245990 GTTTTCTATTATTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAA
261 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAA
* * * * *
18246055 GGAGTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTATGCATGCACAAAACAATT
326 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTT-GGCATGCACAAAAAAAAT
*
18246120 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
390 CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
18246185 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTC
455 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGAGGTGTGAGTTCTC
*
18246249 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCACGTACCAGCACCCATCGCACATCATGT
520 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * *
18246314 GCGCACACCCGCCTGCCAGCCCCTCGATCATCGGAACCCCAATGACGCCGGTCAGGTTCTCCGGT
585 GCGTACACCC-CCCGTCAGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGT
** * * * *
18246379 GATGCTCCGGTGATGGTGCCCCGACGACGAAAAATGCGGCATCAGCACATGCTCGAGCCTAGCAA
649 GATGCTCCGACGATGGTGCCCCGACGACGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * *
18246444 GTGCTGCCGTAACCCTCAGTCCGGTCTGATCTTAGACT-GGAATGAACTCCGTACGCTTAAACTG
714 GTGCTGCCGTAACCCTCGGT-CTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTG
* * * * *
18246508 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGAGGGTGCTCAGTCGGCCAAAA
778 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAG
* * * *
18246573 GGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGAACCTACTG
843 GGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCACTCTGCGTGCTGCCGAGCCTACTG
* * * ** *
18246634 CCACAACCCTTGGTCTGGACCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
1 CCGCAACCCTCGGTCTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
* * * * *
18246699 GAAACGAGCGGGCGGGC----GGGCGGGCACTATGTCGGCCAGAGAGATGAGATGCGCAAGCTGT
66 GAAACGAGCGGGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
18246760 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
131 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* * * * *
18246825 ATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACATGAAGTTGCATGGCAAGATGACTC
196 TTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
*
18246890 GTTTTCTATTTTTCACGA-TTTTGAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC-AG
261 GTTTTCTATTTTTCATGATTTTTG-AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGA-
18246953 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAA
324 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAA
* * *
18247018 ATCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAACTGTCCCCA-TTCTAG
388 ATCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AG
* * * * * * *
18247082 ATACTTTAATGGCTACTGGCAACAAACCTATAGAATCTGATAGGCCCTTTAAGGAGGTGTGAGTT
452 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGAGGTGTGAGTT
*
18247147 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACATCA
517 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
18247212 TGTGAGTACACCCCCCCGTCGGGCCCCCCGATCATCGGAA-CCCAATGCCGCCGGTCAGGTTCTC
582 TGTGCGTACA-CCCCCCGTC-AGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
18247276 CGGTGATGCTCCGACGATGGTGCCCCGACGACGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
645 CGGTGATGCTCCGACGATGGTGCCCCGACGACGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * *
18247341 GCATGTGCTGTCGCAACCCTCGGTCTTGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAA
710 GCATGTGCTGCCGTAACCCTCGGTC-TGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAA
* *
18247406 ACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGAGCGCTCA-TCCGGC
774 ACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGT-CGGC
* * * * *
18247470 CAGAGGGGCGGGATGCGCAAGCCGGGGATCAATCAGGTCCCACTATGCGTGTTGCTGAGCCTACT
838 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCACTCTGCGTGCTGCCGAGCCTACT
18247535 G
903 G
*** * * *
18247536 GTTCAACCCTCGATCTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTGACCCAACCGAT
1 CCGCAACCCTCGGTCTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
* * *
18247601 GAAATGAGCGGGCGGGCGGGAGGGCGGGCACTACACCGGCCAAAGAGACGGGATGCGCAAGCCGT
66 GAAACGAGCGGGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * * *
18247666 GGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGACATTTTT
131 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
18247731 TTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
196 TTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
18247796 GTTTTCTATTTTTCTTGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
261 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAA
*
18247861 GGAGTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAAA
326 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCAC-AAAAAAAA
*
18247926 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCTAGA
389 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGA
* *
18247990 CACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTGAAATGCCCTTTAAGGAGGTGTGAGTTC
453 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGAGGTGTGAGTTC
18248055 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
518 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
*
18248120 GTGCGT--A--------CA-CCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGG
583 GTGCGTACACCCCCCGTCAGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* ** * * *
18248174 TGATGCTCTGGTGATGGTGCCCTTGACGATGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGC
648 TGATGCTCCGACGATGGTGCCC-CGACGACGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
** * ** * * **
18248239 ATGTGCTATCGCAACCCTCATTCTAGTCCGATCTTAGACTGGGAATGAGCTTTGTATGCTTAAAC
712 ATGTGCTGCCGTAACCCTCGGTCT-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAAC
** *
18248304 TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAG
776 TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAG
* * * * *
18248369 AGGGGCGAGATGCGCAAGCCGAGGATCGATCGGGTCCCACTCTACGTGTTACCGAGCCTACTG
841 AGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCACTCTGCGTGCTGCCGAGCCTACTG
* * *
18248432 CCGCAACCCTCGGTCTGGTCTGATCATAGACTTGGAATGAACTCCGTATGCCTAAGCCAACGGAC
1 CCGCAACCCTCGGTCTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
* * * * *
18248497 GAAATGAGCGGGCGGGCGGGAGGGCGGGTACCACGCCGACCAAAGAGACGGGATGCGCAAGCCGT
66 GAAACGAGCGGGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* *
18248562 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCTATTTTT
131 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* *
18248627 TTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGGAGTTTCATGGCAAGACGACTC
196 TTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
18248692 GTTTTTTATTTTTCTTGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTTAAAATTTTTTCGGA
261 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGA-TTTTTTAAAATTTTTTCGAA
*
18248757 AGGAGTTTTGGCCCCAAACATGGTA-ACGTGATCCTTGTATTTTTTTGGCCATGCACAAAAAAAA
325 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGG-CATGCACAAAAAAAA
18248821 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
389 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
18248886 ACCTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTT-ATGATGGTGTGAGTTC
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGA-GGTGTGAGTTC
* *
18248950 TCGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCCATCGCACATCAT
518 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * *
18249015 GTGCGCACACCCCCCCTCCGGCCCCCCGATCGTCGGAACCCTAATGCCGTCTGTCAGGTTCTCCG
583 GTGCGTACACCCCCCGT-CAGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * * * *
18249080 GCGATGTTCTGACGATGGTGCCCCAACGAAGAAAAATGAGGCACCAGCACATGCCTGAG-CCAGC
647 GTGATGCTCCGACGATGGTGCCCCGACGACGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * *
18249144 ATGTACTACCGTAACCCTCGGTCCGGCCCGATCTTAGACTGGGAATGAACTCCGTAT
712 ATGTGCTGCCGTAACCCTCGGT-CTGTCTGATCTTAGACTGGGAATGAACTCCGTAT
18249201 TACTAAGCCA
Statistics
Matches: 3939, Mismatches: 389, Indels: 102
0.89 0.09 0.02
Matches are distributed among these distances:
894 19 0.00
895 240 0.06
896 520 0.13
897 44 0.01
899 9 0.00
900 377 0.10
901 206 0.05
902 222 0.06
904 206 0.05
905 260 0.07
906 731 0.19
907 896 0.23
908 209 0.05
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
CCGCAACCCTCGGTCTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
GAAACGAGCGGGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
TTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAAATC
AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGAGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGTACACCCCCCGTCAGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGA
TGCTCCGACGATGGTGCCCCGACGACGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGCCGTAACCCTCGGTCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGA
ATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGG
CGGGATGCGCAAGCCGGGGATCGATCGGGTCCCACTCTGCGTGCTGCCGAGCCTACTG
Found at i:18246502 original size:25 final size:26
Alignment explanation
Indices: 18246474--18246522 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18246464 CCGGTCTGAT
*
18246474 CTTAGACT-GGAATGAACTCCGTACG
1 CTTAAACTGGGAATGAACTCCGTACG
18246499 CTTAAACTGGGAATGAACTCCGTA
1 CTTAAACTGGGAATGAACTCCGTA
18246523 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTACG
Found at i:18250125 original size:699 final size:698
Alignment explanation
Indices: 18248777--18251369 Score: 3283
Period size: 699 Copynumber: 3.6 Consensus size: 698
18248767 GCCCCAAACA
* *
18248777 TGGTA-ACGTGATCCTTGTA-TTTTTTTGGCCATGCACAAAAAAAATCAGCTAAAAACTCAAAGT
1 TGGTAGACGTCATCCTTGTATTTTTTTTGGCCATGCACAAAAAAAATCAGCTAAAAACTCGAAGT
*
18248840 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCA
66 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
18248905 ACAAACCTGTAAAATCTCAAATGCTCTTTATGATGGTGTGAGTTCTCGAGGTTTGATGAGTGATA
131 ACAAACCTGTAAAATCTCAAATGCTCTTTATGATGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
18248970 GGGGGCCAATATAAGGGCCAAGTACCAGCATCCATCGCACATCATGTGCGCACACCCCCCCTCCG
196 GGGGGCCAATATAAGGGCCAAGTACCAGCATCCATCGCACATCATGTGCGCACA-CCCCCC-CCG
* *
18249035 GCCCCCCGATCGTCGGAACCCTAATGCCGTCTG-TCAGGTTCTCCGGCGATGTTCTGACGATGGT
259 GCCCCCCGATCGTCGGAACCCTAATGCCGTC-GATCAGGTTCTCCGGCGATGCTCCGACGATGGT
*
18249099 GCCCCAACGAAGAAAAATGAGGCACCAGCACATGCCTGAG-CCAGCATGTACTACCGTAACCCTC
323 GCCCCAACGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTACTACCGTAACCCTC
*
18249163 GGTCCGGCCCGATCTTAGACTGGGAATGAACTCCGTATTACTAAGCCAACCAACG-AACGAGGAC
388 GGTCCGGCCCGATCTTAGACTGGGAATGAACTCCGTATTACTAAGCCAACCAACGAAACGAGAAC
*
18249227 -GGAGCGGCGCGGGTGGGGTGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCG
453 AGG-GCGG-GCGGGTGGGG-GGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCG
*
18249291 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATCCCATTGTTATGGCT
515 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTGTTATGGCT
* *
18249356 TGTAGATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTC
580 TGTAGATTCATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTC
18249421 TATTTTTCATGATTTTTGAAACTTTTTTACGGTTCGGCATTTTTTAAAATTTTT
645 TATTTTTCATGATTTTTGAAACTTTTTTACGGTTCGGCATTTTTTAAAATTTTT
18249475 TGGTAGACGTCATCCTTGTATTTTTTTTGG-CATGCACAAAAAAAATCAGCTAAAAACTCGAAGT
1 TGGTAGACGTCATCCTTGTATTTTTTTTGGCCATGCACAAAAAAAATCAGCTAAAAACTCGAAGT
*
18249539 GTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
66 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
18249604 ACAAACCTGTAAAATCTCAAATGCTCTTTATGATGGTGTGAGTTCTCGAGGTTTGATGAGTGATA
131 ACAAACCTGTAAAATCTCAAATGCTCTTTATGATGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
18249669 GGGGGCCAATATAAGGGTCAAGTACCAGCATCCATCACACATCATGTGCGTACACCCCCCTCCGG
196 GGGGGCCAATATAAGGGCCAAGTACCAGCATCCATCGCACATCATGTGCGCACACCCCCC-CCGG
* *
18249734 CCCCCCGATCGTCGGAACCCTAATGCCGTCGATCAGGTTCTCCGGCGATGTTCTGACGATGGTGC
260 CCCCCCGATCGTCGGAACCCTAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
* *
18249799 CCCAACGAAGAAAAATGAGGCACCAGCACATGCCTGCGCCCAGCATGTACTACCGTAACCCTCGG
325 CCCAACGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTACTACCGTAACCCTCGG
*
18249864 TCCGGCCCGATCTTAGACTGGGAATGAACTCCGTATTACTAAGCCAACCAACGAAACGAGCAGCA
390 TCCGGCCCGATCTTAGACTGGGAATGAACTCCGTATTACTAAGCCAACCAACGAAACGAG-AACA
18249929 GGGCGGGCGGGTGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATA
454 GGGCGGGCGGGTGGG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATA
18249994 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTGTTATGGCTTGT
518 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTGTTATGGCTTGT
* *
18250059 -GATTCATACAATGGTCCCTTAATCCTTCACATGAAGTTTCATGGCAAGACGACTTGTTTTCTAT
583 AGATTCATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTAT
*
18250123 TTTTCATGATTTTTGAAATTTTTTTACGGTTCGGCATTTTTTAAAATTTTT
648 TTTTCATGATTTTTGAAACTTTTTTACGGTTCGGCATTTTTTAAAATTTTT
* * *
18250174 TCAGG-AGGAGTTTTGGCTCCAAACTTGGTAGACGTGATCCTAGTATTTTTGTCGCCATGCACAA
1 T--GGTA-GA-----CG-T-C-ATCCT--T----GT-AT--T--T-TTTTTG--GCCATGCACAA
* *
18250238 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATT
41 AAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * * **
18250303 TCAGACATTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
106 TCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTATGATGGTGTG
* * *
18250368 AGTTCTCGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCAC
171 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCCATCGCAC
* * *
18250433 ATCATGCGCGCACA-CCCCCACGGCCCCCCCGATCATCGGAACCCTAATGCCGTCGATCAGGTTC
236 ATCATGTGCGCACACCCCCCCCGG-CCCCCCGATCGTCGGAACCCTAATGCCGTCGATCAGGTTC
* * * * * **
18250497 TCTGGCGAAGCTCCGACGATGGTGCCCCGACGAAGAAAAAGGCGGCACCAGCACATGCCCGAGTG
300 TCCGGCGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGAGGCACCAGCACATGCCCGAGCC
* * ** * *
18250562 CAGCATGTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
365 CAGCATGTACTACCGTAACCCTCGGTCCGGCCCGATCTTAGACTGGGAATGAACTCCGTA---TT
* * * * * *
18250627 AGAGTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGTGGGCGGGCGGGCGG
427 --ACT---AA-G----CC--A-ACC-AA-CGAAACGA-G-AAC-A--GGGCGGGCGGGTGGG-GG
* * *
18250692 GCATTACGCCTGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
471 GCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
18250757 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
536 GGCACATCTTCATATTTCTGCATGCCAATGCCATTGTTATGGCTTGTAGATTCATACAATGGTCC
* ** **
18250822 CTTAAACCTTCACGTGAAGTTGCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAA
601 CTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAA
* * * *
18250887 C-TTTTTGCGGTTTGGGTTTTGTTAAAATTTTTTCGGAAGGAGTTTTGGGCCCAAACT
666 CTTTTTTACGG-TT-CG----G----CATTTTTT---AA--AATTTT----------T
* *
18250944 TGGTAGACGTGATCCTTGTATTTTTTTT-GTCATGCACAAAAAAAATCAGCTAAAAACTCGAAGT
1 TGGTAGACGTCATCCTTGTATTTTTTTTGGCCATGCACAAAAAAAATCAGCTAAAAACTCGAAGT
* * *
18251008 GTACAAGATTTTGTGACTATTCGAAAAAAGTGTCCCCA-TTCTAGACACTTTAATGGCTACTAGC
66 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGC
* * * * * *
18251072 AGCAAACATGTAAAATCTGAAATGCCCTTTAAGGA-GGTGTGAGTTCTGGAGGTTTGATGAGGGA
130 AACAAACCTGTAAAATCTCAAATGCTCTTT-ATGATGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
18251136 TAGGGGGCCAATATAA-GGCCAAGTACCAGCA-CACATCGCACATCATGTGCGTACACCCCCCCG
194 TAGGGGGCCAATATAAGGGCCAAGTACCAGCATC-CATCGCACATCATGTGCGCACACCCCCCC-
* * * * * * *
18251199 TCGGCCCCTTCGATCGTCGGAACCCCAATACCGCCGGTTAGGTTCTCCGGTGATGCTCCGACGAT
257 -CGGCCCC-CCGATCGTCGGAACCCTAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGACGAT
* * * * * * * *
18251264 GGTGCCCCGACGACGAAAAATGCGGCACCAGCACATGCCCGAGCGCAGTATGTGCTATCGTAACA
320 GGTGCCCCAACGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTACTACCGTAACC
* * * * * *
18251329 CTTGGACTGGTCTGATCTTGGACTGGGAATGAACTCCGTAT
385 CTCGGTCCGGCCCGATCTTAGACTGGGAATGAACTCCGTAT
18251370 GCTTAAACTG
Statistics
Matches: 1675, Mismatches: 129, Indels: 136
0.86 0.07 0.07
Matches are distributed among these distances:
697 1 0.00
698 116 0.07
699 416 0.25
700 136 0.08
701 10 0.01
702 2 0.00
706 1 0.00
707 1 0.00
708 1 0.00
709 3 0.00
711 1 0.00
715 2 0.00
716 2 0.00
718 1 0.00
720 1 0.00
721 6 0.00
722 3 0.00
723 153 0.09
724 200 0.12
726 2 0.00
728 2 0.00
731 2 0.00
732 1 0.00
736 2 0.00
738 1 0.00
739 2 0.00
740 2 0.00
741 6 0.00
742 3 0.00
743 2 0.00
744 38 0.02
745 293 0.17
746 82 0.05
747 142 0.08
748 5 0.00
749 1 0.00
751 2 0.00
753 2 0.00
754 2 0.00
755 7 0.00
758 3 0.00
760 8 0.00
762 1 0.00
763 1 0.00
768 4 0.00
769 1 0.00
770 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (698 bp):
TGGTAGACGTCATCCTTGTATTTTTTTTGGCCATGCACAAAAAAAATCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
ACAAACCTGTAAAATCTCAAATGCTCTTTATGATGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCATCCATCGCACATCATGTGCGCACACCCCCCCCGGC
CCCCCGATCGTCGGAACCCTAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
CCAACGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTACTACCGTAACCCTCGGT
CCGGCCCGATCTTAGACTGGGAATGAACTCCGTATTACTAAGCCAACCAACGAAACGAGAACAGG
GCGGGCGGGTGGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTGTTATGGCTTGTAGA
TTCATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTT
TCATGATTTTTGAAACTTTTTTACGGTTCGGCATTTTTTAAAATTTTT
Found at i:18250627 original size:26 final size:26
Alignment explanation
Indices: 18250598--18250650 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18250588 CCGGTCTGAT
*
18250598 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18250624 CTTAGAGTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18250650 C
1 C
18250651 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18252288 original size:26 final size:26
Alignment explanation
Indices: 18252250--18252300 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18252240 CTGGTCTGAT
* *
18252250 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAAACTAGGAATAAACTCCGTATG
*
18252276 CTTAAACTAGGAATGAACTCCGTAT
1 CTTAAACTAGGAATAAACTCCGTAT
18252301 AACTAACTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAAACTAGGAATAAACTCCGTATG
Found at i:18252761 original size:906 final size:904
Alignment explanation
Indices: 18250633--18259693 Score: 11199
Period size: 904 Copynumber: 10.0 Consensus size: 904
18250623 GCTTAGAGTA
* * * *
18250633 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGTGGGCGGGCGGGCGGGCATTA
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-CGGCGGGCGGGAGGGCGGGCACTA
*
18250698 CGCCTGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
65 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
18250763 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAA
130 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * **
18250828 CCTTCACGTGAAGTTGCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTT
195 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* *
18250893 GCGGTTTGGG-TTTTGTTAAAATTTTTTCGGAAGGAGTTTTGGGCCCAAACTTGGTAGACGTGAT
260 GCGGTTCGGGATTTT-TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
*
18250957 CCTTGTATTTTTTTTGTCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
324 CCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * * *
18251022 GACTATTCGAAAAAAGTGTCCCCA-TTCTAGACACTTTAATGGCTACTAGCAGCAAACATGTAAA
389 GACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
18251086 ATCTGAAATGCCCTTTAAGGAGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATA
453 ATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* **
18251151 A-GGCCAAGTACCAGCACACATCGCACATCATGTGCGTACACCCCCCCGTCGGCCCCTTCGATCG
518 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACA-CCCCCCGTC-GCCCCCCCGATCG
* *
18251215 TCGGAACCCCAATACCGCCGGTTAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGACGA
581 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGACGA
* * ** * * * *
18251280 AAAATGCGGCACCAGCACATGCCCGAGCGCAGTATGTGCTATCGTAACACTTGGACTGGTCTGAT
646 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGAT
*
18251345 CTTGGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
711 CTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
18251410 ACGAAACAAGCGTGCGGGCGCTCAG-CGACCAGAGGGGCGAGATGCGCAAGCCGGGGATCAATCA
776 ACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * *
18251474 GGTCCCACTCTGCGTGCTGCCAAGCCTATTGCTGGAACCCTCAGTCTGGTCTGATCATAGACTC
841 GGTCCCACTCTGCGTGCTGCCGAGCCTACTGCCGCAACCCTCAGTCTGGTCTGATCATAGACTG
* * *
18251538 GGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGCGTGCGGGTGGGAGGGCGGGCACTA
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GCGGGCGGGAGGGCGGGCACTA
* * *
18251603 TGCCAGCCAGAGAGATGGGATGCGCAAGTCC-TGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
65 CGCCGGCCAGAGAGACGGGATGCGCAAG-CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
18251667 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTTTTGCTTGTAAATTCATACAATGGTCCCTTAA
129 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
18251732 GCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAAGTTTT
194 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
* * *
18251797 TGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGAT
259 TGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * * *
18251862 CCTTGTATCTTTTTGGGCATGCACAAAAAAAATCAGCTAAAAACTCAAAGTGTACGAGATTTTGT
324 CCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
18251927 GACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAA
389 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
18251992 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGCTAGGGGGCCAATATAA
454 TCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * *
18252057 GGGCTAAGCACCAGCACCCATCACACATCATGTGCGTACACCCCCCGTCAGCCCCCCCGATCGTC
519 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGTC-GCCCCCCCGATCGTC
* * *
18252122 AGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAA
583 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGACGAAA
* * *
18252187 AATGCGGTACCAGCACATGCCCGAGCCCAACATGTGCTGCCGTAACCCTCGGTCTGGTCTGATCT
648 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCT
* * ** *
18252252 TAGACTGGGAATAAACTCCGTATGCTTAAACTAGGAATGAACTCCGTATAACTAACTCAACCCAC
713 TAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * *
18252317 GAAACAAGCGTGCGGGCGCTCAGTCGGCCAAAGGGGCGGGATGCGCAAGCTGGGGATCGACCGAG
778 GAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGG
** * ** *
18252382 TCCCACTCTGTATGCTGCCGAGCCTACTGCCACAACCCTTGGTCTGGTCTGATCATAGATTG
843 TCCCACTCTGCGTGCTGCCGAGCCTACTGCCGCAACCCTCAGTCTGGTCTGATCATAGACTG
* * *
18252444 GGAATGAACTCCGTATGCCTAAGCCAACTGACAAAACGAGCAGGCGGGCGAGAGGGCGGGCACTA
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGAGGGCGGGCACTA
*
18252509 CGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
65 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * * *
18252574 TCTTCATATTTCTACATGCCAATGCCGTTTTTTTGGGTTGTAAATTCATACAATGGTCCCTTAAG
130 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
18252639 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTATTCATGATTTTTGAAACTTTTT
195 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* * * *
18252704 ACGGTTTGGGATTTTTTAAAATTTTTTTC-GAAGGAGTTTTAGCCCCAAACTTGGTAGACATGAT
260 GCGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
18252768 CCTTGTATTTTTTTAGGCATGCACAAAAAAATTCAGCTAAAAACT-GAAAGCGTACAAGATTTTG
324 CCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCG-AAGTGTACAAGATTTTG
*
18252832 TGACCATTTGAAAAAAGTGTCCCCACTTT-AGACACTTTAATGGCTACTGGCAGCAAACCTATAA
388 TGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
**
18252896 AATCTCAAATGCTCTTTAA-GAGGTGCCAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
452 AATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
18252960 AAGGGCCATA-TACCAGCACCCATCGCACATCATGTGCGTACA---CCCGTCTGCCAGCCCCTCG
517 AAGGGCCA-AGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGTC-GCC--CCCC-CG
* * **
18253021 ATCATCGGAACCCCAATGACGCCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACG
577 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACG
* * * * *
18253086 ACGAAAAATGCGGCACCAGCACATGCTCGAGCCTAGCAAGTGCTGCCGCAACCCTCAGTCCGGTC
642 ACGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
18253151 TGATCTTAGACT-GGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCA
707 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
18253215 ACCCACGAAACAAGCGTGCGGGTGCTCAGTCAGCCAAAGGGGCGGGATGCGCAAGTCGGGGATCG
772 ACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * ** ** * * *
18253280 ATCGGGTCCCCCTCTGCATGCTGCTGAACCTACTGCCATAACCCTTGGTCTGGAGC-AATCTTAG
837 ATCGGGTCCCACTCTGCGTGCTGCCGAGCCTACTGCCGCAACCCTCAGTCTGG-TCTGATCATAG
*
18253344 ATTG
901 ACTG
*
18253348 GGAATTAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC--GA--GCGGGCACTA
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGAGGGCGGGCACTA
* * * *
18253409 TGTCGGCCAGAGAGACGGGATGCGCAAGCGGTGGATCGATAGGGTGGTAGCTGGGTTTAGGCACA
65 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*
18253474 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
130 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * * *
18253539 CCTTCACATGAAGTTGCATGGCAAGATGACTCGTTTTTTATTTTTCACGA-TTTTGAAAACTTTT
195 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG-AAACTTTT
* * *
18253603 TGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGAT
259 TGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
18253668 CCTTGTATTTTTGTTGGCATGCACAAAAAAAATTAGCTAAAAACTCGAAGTGTACAAGATTTTGT
324 CCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
18253733 GACCATTTGAAAAAAGTGTCCCCA-TTCTAGACACTTGAATGGCTACTGGCAACAAACCTGTAAA
389 GACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * * * *
18253797 ATCTGATAGGCCCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATA
453 ATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * * *
18253862 AGGGCCAAGGACCAGCACCCATCTCACATCATGTGTGTACACCCCCCCGTCGGCCCCCCGATCAT
518 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACA-CCCCCCGTCGCCCCCCCGATCGT
* * * *
18253927 CGTAA-CCCAATGGCCGCCGGTCAGGTTCTTCGGTGATGCTCCGACGGATGAGTGCCTCGGATGA
582 CGGAACCCCAAT-GCCGCCGGTCAGGTTCTCCGGTGATGCTCCGAC-GATG-GTGCC-CCGACGA
* * *
18253991 CGAAAAATGAGGCACCCAGCACAATGCCCGAG-CCAGCATGTGCTGTCGCAACCCTCCGGTCTTG
643 CGAAAAATGCGGCA-CCAGCAC-ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT-CGGTCTGG
* *
18254055 TCTGATTCTTAGACTGGGAATGAACTCCATATGCTTAAAATTGGGAATGAACTCCGTATGCCTAA
705 TCTGA-TCTTAGACTGGGAATGAACTCCGTATGCTT-AAACTGGGAATGAACTCCGTATGCCTAA
*
18254120 GTCAACCCGCGCGGCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGCA
768 GTCAA------C--CCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * **
18254185 AGCCGGGGATCAATCGGGTCCCACTCTACGTGTTGCTGAGCCTACTGCTTCAACCCTCAGTCTGG
825 AGCCGGGGATCGATCGGGTCCCACTCTGCGTGCTGCCGAGCCTACTGCCGCAACCCTCAGTCTGG
18254250 TCTGATCATAGACTG
890 TCTGATCATAGACTG
* * *
18254265 GGAATGAACTCCGTATGCCTGA-CCTAACCGATGAAACGAGCGG-GTGCGGGAGGGCGGGCACTC
1 GGAATGAACTCCGTATGCCTAAGCC-AACCGACGAAACGAGCGGCGGGCGGGAGGGCGGGCACT-
*** * *
18254328 AC-CAATCCA-AGAGTCGGGATGCGC-AGCCGTGGATCGATAGGGTGCTA-GTGGGTTTAGGCAC
64 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
18254389 ATCTTCATATTTCTACGTGCCAATGCCATTTTT-TGGCTTGTAAATTCATACAATGGT-CCTTAA
129 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
18254452 GCCTTCA-GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCTTGATTTTTGAAACTTTT
194 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
*
18254516 TGCGGTTCGGGATTTTTTAAAATTTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGA
259 TGCGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * *
18254581 TCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATCAGCTAAAATCTCGTAGTGTACAAGATTTTG
323 TCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
18254646 TGACCATTTGAAAAAAGTGTCCCCA-TTCTAGACACTTGAATGGCTACTGGCAACAAACCTGTAA
388 TGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * * * *
18254710 AATCTGATAGGCCCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATAT
452 AATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * *
18254775 AAGGGCCAAGTACCAGCACCCATCTCACATCATGTGTGTACACCCCCCCGTCGGCCCCCCGATCA
517 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACA-CCCCCCGTCGCCCCCCCGATCG
* * * * *
18254840 TCGTAACCCCAATGCCGTCGGTCAGGTTCTTCGGTGATGCTCCGACGATGGTGCCTCGATGACGA
581 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGACGA
* * *
18254905 AAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTTGTCTGAT
646 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* *
18254970 CTTAGACTGGGAATGAACTCCATATGCTTAAATTGGGAATGAACTCCGTATGCCTAAGTCAACCC
711 CTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* **
18255035 ACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGAAATGCGCAAGCCGGGGATCGATCG
776 ACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * * *
18255100 GGTCCCACTCTACGTGTTGCCGAGCCTACTACCGTAACCCTCGGTCTGGTCTGATCATAGACTT
841 GGTCCCACTCTGCGTGCTGCCGAGCCTACTGCCGCAACCCTCAGTCTGGTCTGATCATAGACTG
* *
18255164 GGAATGAACTCCGTATGCCTAAGCGAACCGACGGAACGAGCGGGCGGGCGGGAGGGCGGGCACTA
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGAGGGCGGGCACTA
* * * *
18255229 TGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACA
65 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
18255294 TCTTCATATTTCTGCGTGCCAATGCTATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAG
130 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
18255359 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTATTCATGATTTTTGAAACTTTTT
195 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* * * *
18255424 ACGGTTTGGGATTTTTTAAAATTTTTTTC-GAAGGAGTTTTAGCCCCAAACTTGGTAGACATGAT
260 GCGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * **
18255488 CCTTGTATTTTTTTAGGCATGCACAAAAAAATTCAGCTAAAAACTAAAAGTGTACAAGATTTTGT
324 CCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
18255553 GACCATTTGAAAAAAGTGTCCCCACTTT-AGACACTTTAATGGCTACTGGCAGCAAACCTATAAA
389 GACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
**
18255617 ATCTCAAATGCTCTTTAA-GAGGTGCCAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
453 ATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
18255681 AGGGCCATA-TACCAGCACCCATCGCACATCATGTGCGTACA---CCCGTCTGCCAGCCCCTCGA
518 AGGGCCA-AGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGTC-GCC--CCCC-CGA
* * **
18255742 TCATCGGAACCCCAATGACGCCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACGA
578 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGA
* * * * *
18255807 CGAAAAATGCGGCACCAGCACATGCTCGAGCCTAGCAAGTGCTGCCGCAACCCTCAGTCCGGTCT
643 CGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCT
*
18255872 GATCTTAGACT-GGAATGAACTCCGTATGCTTAAACTAGGAATGAACTCCGTATGCCTAAGTCAA
708 GATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAA
* **
18255936 CCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGAAATGCGCAAGCCGGGGATCGA
773 CCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * *
18256001 TCGGGTCCCACTCTACGTGTTGCCGAGCCTACTGCCGCAACCCTCGGTCTGGTCTGGTCATAGAC
838 TCGGGTCCCACTCTGCGTGCTGCCGAGCCTACTGCCGCAACCCTCAGTCTGGTCTGATCATAGAC
*
18256066 TT
903 TG
* *
18256068 GGAATGAACTCCGTATGCCTAAGCGAACCGACGAAACGAACGGACGGGCGGGAGGGCGGGCACTA
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG-CGGGCGGGAGGGCGGGCACTA
* * *
18256133 CGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACA
65 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
18256198 TCTTCATATTTCTGCGTGCCAATGCTATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAG
130 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
18256263 CCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCTTGATTTTTGAAACTTTTT
195 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* *
18256328 GCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGCGTTTTGGCCCCAAACTTGGTA-ACGTGATC
260 GCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
18256392 CTTGTA-TTTTTTTGGACATGCACAAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGATTTTG
325 CTTGTATTTTTTTTGG-CATGCAC-AAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * * *
18256456 TGACCATTTGAAAAAGGTGTCCCCATTTTAGACACCTTAATGGCTA-TCGGCAACAAACCTGTAA
388 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-GGCAGCAAACCTGTAA
* * *
18256520 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGTTAGGGGGCCAATAT
452 AATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* *
18256585 AAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCGCCG--GCCCCCCCGATCG
517 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCC-CCGTCGCCCCCCCGATCG
* * * * ** * * ** * *
18256648 CCGTATCCCTAATGCTACCAGTCAAGTTCTCCGACGATGCAT-CGACGATGGTGCCCCGAGGAAG
581 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGC-TCCGACGATGGTGCCCCGACGACG
* * * * *
18256712 AAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCACAACCCTCGATCTAGT-TCG
645 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCT-G
* * * * * * *
18256776 ATCTCAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATAAACGCCATATGCCAAAGTCAAC
709 ATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * *
18256841 CCACGAAACGAGCTTGCGGGGGCTCAGCCGGCCA-ATGGGGCAGGACGCACAAGCCGGGGATAGA
774 CCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGA-GGGGCGGGATGCGCAAGCCGGGGATCGA
* * ** ** ** * * * *
18256905 TCAGGTCCCTCTCTAAGTGCTGTTGA-TATGCCTGCCGCAACCCTTAGTCCGGTCTGATCTTAGA
838 TCGGGTCCCACTCTGCGTGCTGCCGAGCCT-ACTGCCGCAACCCTCAGTCTGGTCTGATCATAGA
18256969 CTG
902 CTG
* * * * * * *
18256972 GGAATTAACTCCGTATGCCTAAGCTAACCGACGAAATGAGCGGGCGGGCGAGCA-AGCAGGCTCT
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCG-GGAGGGCGGGCACT
** * * * * *
18257036 ACGCCTACCAAAGAGACAGGATGCGAAAGCCGTGGATCGATAGGGTGCTAGGTGGGATTAGGCAC
64 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
18257101 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
129 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * **
18257166 GCCTTCACGTGAAGTTGCATGGCAAGGACGACTCGTGTTCTA--TTTCACGATTTTCAAAAACTT
194 GCCTTCACGTGAAGTTTCATGGCAA-GACGACTCGTTTTCTATTTTTCATGATTTT-TGAAACTT
* *
18257229 TTTACGGTTCGAGATTTTTTAAAATTTTTTC-GAAGGAG-TTTGGCCCCAAACTTGGTAGACGTG
257 TTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
18257292 ATCCTTGTATTTTTTTTGGCATGCACAAAACAAATCAGCGAAAAACTCGAAGTGTACAATATTTT
322 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
18257357 TTGA-CATTTGAAAAAAGTGTCCCCATTGTCAGACACTTTAATGGCTACTTGGCGCAGACAAA-C
387 GTGACCATTTGAAAAAAGTGTCCCCATT-TCAGACACTTTAATGGCTAC-T-G-GCAG-CAAACC
* * *
18257420 TACTAAAATCTCAAATGCTCTTTAAGG-GGGGTG-GTTCTCAAGGTTTGATGAGGG-TA-GGGGC
447 T-GTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * * *
18257481 CAATATAAGGGCCAAGTATCAGCACCCATCGGCCACTCATCATGTGCGCACACCAGCCCGCCAAC
511 CAATATAAGGGCCAAGTACCAGCACCCATC-G-CA--CATCATGTGCGTACACC-CCCCGTC-GC
* * * *
18257546 CCCCCAGAATCGCCGGAACCCTAATGCCGGCCGATCAAGGTTTCTCCGGTGGATG----G--G-T
570 CCCCCCG-ATCGTCGGAACCCCAATGCC-GCCGGTC-AGG-TTCTCCGGT-GATGCTCCGACGAT
* ** * * * * * *
18257604 --TGCCTCGGTTGATG-AAATTGGCGAGCACCAGGCACATGGCTCGAAGCCTAGCAAGTGGTTGC
630 GGTGCC-CCGACGACGAAAAAT-GCG-GCACCA-GCACAT-GCCCG-AGCCCAGCATGT-GCTGC
* * * ** * * **
18257666 CGCAACCCTCAGTCCGCTCCAATCTTCAGACTGGCAAT-AAATCATATATGCTTAAACTGGGAAT
688 CGCAACCCTCGGTCTGGTCTGATCTT-AGACTGGGAATGAACTC-CGTATGCTTAAACTGGGAAT
* * *
18257730 GAACTTCGTTATGCCTAAGTTCAACCCGTA-GAATACGAGCGTGCGGGCGCTCAGGTCGGCCAGA
751 GAACTCCG-TATGCCTAAG-TCAACCC--ACGAA-ACAAGCGTGCGGGCGCTCA-GCCGGCCAGA
* * * * * * * * * *
18257794 GCGGCAGGATGCGC-AGTCGAGGATCGATCGGGTCCCCCTCTGCATGTTGCCGATCCTGCTACCG
810 GGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCACTCTGCGTGCTGCCGAGCCTACTGCCG
* *
18257858 CAA-CCTCAGTCTGGTCT-ATTC-TCATACTA
875 CAACCCTCAGTCTGGTCTGA-TCAT-AGACTG
* * * *
18257887 GGAAT-AACTCCCGTCATTTTATAACCTAAGCCTACTGACGAATACGAGCGGCAGGC-----GGC
1 GGAATGAACT-CCG------TAT-GCCTAAGCCAACCGACGAA-ACGAGCGGCGGGCGGGAGGGC
** * * ** * *
18257946 GGGCACTACGTTGGCCAGAGAGAGGGGATGCAC-AG-TAT-GATCGAACAGGGGTGGTAGGCGGG
57 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG-ATA-GGGTGGTAGGTGGG
*
18258008 TTTA-GC-CATTCTTCATA-TTCTACGTTGCCAATG-CA-TTTTATGGCTTGTAAATTCATACAA
120 TTTAGGCACA-TCTTCATATTTCTGCG-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
18258068 TTGGTCCCTTAAGCCGTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATT
183 -TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
** * * * * *
18258133 TTCAAAACTTTTTACAGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGCCCCCAAACTT
247 TTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
** *
18258198 GGTAGACGTGATCCTTGTATTTTTGCTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGT
312 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGT
* * *
18258262 ACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAAACACTTTAATGGCTACTGACAGC
377 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * **
18258327 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAATTTTGATGAGGGATAGG
442 AAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
** * **
18258392 GGGCCAATATAAGCACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC--CGAAA
507 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGTCG-CC
* * * * *
18258455 CCCCCGATCGTCAGAACGCCAATGCCGTCGGTCAGGTTCTCCAGCGATGCTCC-AGCGATGGTGC
571 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGA-CGATGGTGC
* * * **
18258519 CCC-A-G-CG---AA----G-A--A--AAATACCCGAGCCTAATATGTGCT-CCTGCAACCCTCG
635 CCCGACGACGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC-GCAACCCTCG
18258568 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAA-TCCCGTATG
699 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACT-CCGTATG
* * * * * ** *
18258632 CCTGACTCAACCCACGAAACGAA-TGTGCAGGCACTCAGTAGGCCAGAGGGGCGGGATGTGCAAG
763 CCTAAGTCAACCCACGAAAC-AAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * ** * * * *
18258696 TCGGGGATTGGTCGGGTCCC-CTTCTATGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGGT
827 CCGGGGATCGATCGGGTCCCAC-TCTGCGTGCTGCCGAGCCTACTGCCGCAACCCTCAGTCTGGT
*
18258760 CTGATC-TGAGACTA
891 CTGATCAT-AGACTG
* * *
18258774 GGAATGAACTTCGTATGCCTAAGCCAACCGATGAAATGA----C---C----GGGCGGGCACTAC
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGAGGGCGGGCACTAC
* * * * * * * *
18258828 GCCGGCCAGAGAGACGAGTTGCGTAAGCCCTGGATCGATAGGGTGGCAGGCGGGTTTAGCCATAT
66 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
18258893 CTTCATATTTCTACGTGCCAATGCCA-TTTTATGGCTTGTAAATTCATACACTGGTCCCTTAAGC
131 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * ** **
18258957 CTTCATGTGAAGTTTCATGGCAAGATGAGTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTG
196 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTG
* **
18259022 CAG-TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGAACCCAAACTTGGTAGACGTGATCC
261 CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * *
18259086 TTGTATATTTGTTGGCATGCACAAACAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
326 TTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
18259151 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCATTGGCAGCAAACCTATAAAATC
391 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * * * *
18259216 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGTGATAGGGGGCTAATATATGG
456 TCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
*
18259281 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCC--CGGCCCCCCCGATCGTCG
521 GCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCC-CCCGTC-GCCCCCCCGATCGTCG
* * * *
18259344 GAACCCCAATGCCGCC-G--A-----TCAGGT--T-CTCCGACGATGGTGCACCGATGAAGAAAA
584 GAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGACGAAAA
* *
18259398 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTT
649 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTT
** * * * * *
18259463 TCACTAGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCTCG
714 AGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * *
18259528 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGAATGCGCAAGCCGAGGATCGACCGGGT
779 AAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT
** * * * * * * * * * *
18259593 CCTC-CTCTGCGTGCTGTTGATCTTGCTACCACAACCCT-TGGCTCGATCTGATCTTAGATTG
844 CC-CACTCTGCGTGCTGCCGAGCCTACTGCCGCAACCCTCAGTCT-GGTCTGATCATAGACTG
* *
18259654 GGAATGAGCCCCGTATGCCTAAGCCAACCGACGAAACGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
18259694 TGGGTGGGTG
Statistics
Matches: 7184, Mismatches: 758, Indels: 452
0.86 0.09 0.05
Matches are distributed among these distances:
865 15 0.00
866 3 0.00
867 1 0.00
868 4 0.00
871 2 0.00
872 1 0.00
873 30 0.00
874 96 0.01
875 295 0.04
876 70 0.01
877 1 0.00
878 1 0.00
879 7 0.00
880 235 0.03
881 9 0.00
885 21 0.00
886 57 0.01
887 33 0.00
888 12 0.00
889 9 0.00
890 35 0.00
891 26 0.00
892 9 0.00
893 3 0.00
894 3 0.00
897 1 0.00
898 2 0.00
899 167 0.02
900 375 0.05
901 171 0.02
902 152 0.02
903 220 0.03
904 1291 0.18
905 1276 0.18
906 805 0.11
907 160 0.02
908 66 0.01
909 71 0.01
910 62 0.01
911 92 0.01
912 51 0.01
913 145 0.02
914 453 0.06
915 190 0.03
916 190 0.03
917 209 0.03
918 15 0.00
919 12 0.00
920 1 0.00
921 3 0.00
922 21 0.00
923 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (904 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGAGGGCGGGCACTAC
GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTG
CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
TTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
GCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGTCGCCCCCCCGATCGTCGGA
ACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGACGAAAAAT
GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCC
CACTCTGCGTGCTGCCGAGCCTACTGCCGCAACCCTCAGTCTGGTCTGATCATAGACTG
Found at i:18253183 original size:25 final size:26
Alignment explanation
Indices: 18253155--18253206 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18253145 CCGGTCTGAT
*
18253155 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
18253180 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
18253206 C
1 C
18253207 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:18255912 original size:26 final size:25
Alignment explanation
Indices: 18255875--18255926 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
18255865 CCGGTCTGAT
*
18255875 CTTAGACTGGAATGAACTCCGTATG
1 CTTAAACTGGAATGAACTCCGTATG
18255900 CTTAAACTAGGAATGAACTCCGTATG
1 CTTAAACT-GGAATGAACTCCGTATG
18255926 C
1 C
18255927 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
CTTAAACTGGAATGAACTCCGTATG
Found at i:18256122 original size:904 final size:903
Alignment explanation
Indices: 18250633--18259693 Score: 11139
Period size: 905 Copynumber: 10.0 Consensus size: 903
18250623 GCTTAGAGTA
* * * *
18250633 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGTGGGCGGGCGGGCGGGCATTA
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-CGGCGGGCGGGAGGGCGGGCACTA
18250698 CGCCTG-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
65 CGCC-GACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
18250762 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
129 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * **
18250827 ACCTTCACGTGAAGTTGCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTT
194 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
* *
18250892 TGCGGTTTGGG-TTTTGTTAAAATTTTTTCGGAAGGAGTTTTGGGCCCAAACTTGGTAGACGTGA
259 TGCGGTTCGGGATTTT-TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
18250956 TCCTTGTATTTTTTTTGTCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTG
323 TCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * * * *
18251021 TGACTATTCGAAAAAAGTGTCCCCATTCTAGACACTTTAATGGCTACTAGCAGCAAACATGTAAA
387 TGACCATTTGAAAAAAGTGTCCCCATT-TAGACACTTTAATGGCTACTGGCAGCAAACCTATAAA
* * *
18251086 ATCTGAAATGCCCTTTAAGGAGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATA
451 ATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * *
18251151 A-GGCCAAGTACCAGCACACATCGCACATCATGTGCGTACACCCCCCCGTCGGCCCCTTCGATCG
516 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGCCAGCCCC-CCGATCG
* * *
18251215 TCGGAACCCCAATACCGCCGGTTAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGACGA
580 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGACGA
* * ** * * * *
18251280 AAAATGCGGCACCAGCACATGCCCGAGCGCAGTATGTGCTATCGTAACACTTGGACTGGTCTGAT
645 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGAT
*
18251345 CTTGGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
710 CTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * *
18251410 ACGAAACAAGCGTGCGGGCGCTCAG-CGACCAGAGGGGCGAGATGCGCAAGCCGGGGATCAATCA
775 ACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCG
* * * * * *
18251474 GGTCCCACTCTGCGTGCTGCCAAGCCTATTGCTGGAACCCTCAGTCTGGTCTGATCATAGACTC
840 GGTCCCACTCTACGTGCTGCCGAGCCTACTGCCGCAACCCTCAGTCTGGTCTGATCATAGACTT
* * *
18251538 GGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGCGTGCGGGTGGGAGGGCGGGCACTA
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GCGGGCGGGAGGGCGGGCACTA
* *
18251603 TGCC-AGCCAGAGAGATGGGATGCGCAAGTCC-TGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
65 CGCCGA-CCAGAGAGACGGGATGCGCAAG-CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
18251666 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTTTTGCTTGTAAATTCATACAATGGTCCCTTA
128 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
18251731 AGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAAGTTT
193 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
* * *
18251796 TTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGA
258 TTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * *
18251861 TCCTTGTATCTTTTTGGGCATGCACAAAAAAAATCAGCTAAAAACTCAAAGTGTACGAGATTTTG
323 TCCTTGTAT-TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * *
18251926 TGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAA
387 TGACCATTTGAAAAAAGTGTCCCCATTT-AGACACTTTAATGGCTACTGGCAGCAAACCTATAAA
* * *
18251991 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGCTAGGGGGCCAATATA
451 ATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * *
18252056 AGGGCTAAGCACCAGCACCCATCACACATCATGTGCGTACA-CCCCCCGTCAGCCCCCCCGATCG
516 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGCCAG-CCCCCCGATCG
* * * *
18252120 TCAGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGA
580 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGACGA
* * *
18252185 AAAATGCGGTACCAGCACATGCCCGAGCCCAACATGTGCTGCCGTAACCCTCGGTCTGGTCTGAT
645 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * ** *
18252250 CTTAGACTGGGAATAAACTCCGTATGCTTAAACTAGGAATGAACTCCGTATAACTAACTCAACCC
710 CTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * *
18252315 ACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAAAGGGGCGGGATGCGCAAGCTGGGGATCGACCG
775 ACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCG
* *** * **
18252380 AGTCCCACTCTGTATGCTGCCGAGCCTACTGCCACAACCCTTGGTCTGGTCTGATCATAGA-TT
840 GGTCCCACTCTACGTGCTGCCGAGCCTACTGCCGCAACCCTCAGTCTGGTCTGATCATAGACTT
* * *
18252443 GGGAATGAACTCCGTATGCCTAAGCCAACTGACAAAACGAGCAGGCGGGCGAGAGGGCGGGCACT
1 -GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGAGGGCGGGCACT
* *
18252508 ACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
64 ACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * * *
18252573 ATCTTCATATTTCTACATGCCAATGCCGTTTTTTTGGGTTGTAAATTCATACAATGGTCCCTTAA
129 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
18252638 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTATTCATGATTTTTGAAACTTTT
194 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
* * * *
18252703 TACGGTTTGGGATTTTTTAAAATTTTTTTC-GAAGGAGTTTTAGCCCCAAACTTGGTAGACATGA
259 TGCGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
*
18252767 TCCTTGTATTTTTTTAGGCATGCACAAAAAAATTCAGCTAAAAACT-GAAAGCGTACAAGATTTT
323 TCCTTGTATTTTTTT-GGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTGTACAAGATTTT
18252831 GTGACCATTTGAAAAAAGTGTCCCCACTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAA
386 GTGACCATTTGAAAAAAGTGTCCCCA-TTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAA
**
18252896 AATCTCAAATGCTCTTTAA-GAGGTGCCAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
450 AATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
** * *
18252960 AAGGGCCATA-TACCAGCACCCATCGCACATCATGTGCGTACACCCGTCTGCCAGCCCCTCGATC
515 AAGGGCCA-AGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGCCAGCCCCCCGATC
* * *
18253024 ATCGGAACCCCAATGACGCCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACGACG
579 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGACG
* * * * *
18253089 AAAAATGCGGCACCAGCACATGCTCGAGCCTAGCAAGTGCTGCCGCAACCCTCAGTCCGGTCTGA
644 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGA
18253154 TCTTAGACT-GGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACC
709 TCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * *
18253218 CACGAAACAAGCGTGCGGGTGCTCAGTCAGCCAAAGGGGCGGGATGCGCAAGTCGGGGATCGATC
774 CACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATC
* * * * * ** ** * * *
18253283 GGGTCCCCCTCTGCATGCTGCTGAACCTACTGCCATAACCCTTGGTCTGGAGC-AATCTTAGA-T
839 GGGTCCCACTCTACGTGCTGCCGAGCCTACTGCCGCAACCCTCAGTCTGG-TCTGATCATAGACT
18253346 T
903 T
*
18253347 GGGAATTAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC--GA--GCGGGCACT
1 -GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGAGGGCGGGCACT
* * * * *
18253408 ATGTCGGCCAGAGAGACGGGATGCGCAAGCGGTGGATCGATAGGGTGGTAGCTGGGTTTAGGCAC
64 ACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
18253473 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
129 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * * *
18253538 GCCTTCACATGAAGTTGCATGGCAAGATGACTCGTTTTTTATTTTTCACGA-TTTTGAAAACTTT
194 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG-AAACTTT
* * *
18253602 TTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGA
258 TTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
18253667 TCCTTGTATTTTTGTTGGCATGCACAAAAAAAATT-AGCTAAAAACTCGAAGTGTACAAGATTTT
323 TCCTTGTATTTTT-TTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
18253731 GTGACCATTTGAAAAAAGTGTCCCCATTCTAGACACTTGAATGGCTACTGGCAACAAACCTGTAA
386 GTGACCATTTGAAAAAAGTGTCCCCATT-TAGACACTTTAATGGCTACTGGCAGCAAACCTATAA
* * * * *
18253796 AATCTGATAGGCCCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATAT
450 AATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * * * *
18253861 AAGGGCCAAGGACCAGCACCCATCTCACATCATGTGTGTACACCCCCCCGTCGGCCCCCCGATCA
515 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGCCAGCCCCCCGATCG
* * * * *
18253926 TCGTAA-CCCAATGGCCGCCGGTCAGGTTCTTCGGTGATGCTCCGACGGATGAGTGCCTCGGATG
580 TCGGAACCCCAAT-GCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGC-GATG-GTGCC-CCGACG
* * *
18253990 ACGAAAAATGAGGCACCCAGCACAATGCCCGAG-CCAGCATGTGCTGTCGCAACCCTCCGGTCTT
641 ACGAAAAATGCGGCA-CCAGCAC-ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT-CGGTCTG
* *
18254054 GTCTGATTCTTAGACTGGGAATGAACTCCATATGCTTAAAATTGGGAATGAACTCCGTATGCCTA
703 GTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCTT-AAACTGGGAATGAACTCCGTATGCCTA
* *
18254119 AGTCAACCCGCGCGGCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGC
766 AGTCAA------C--CCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGC
* * * **
18254184 AAGCCGGGGATCAATCGGGTCCCACTCTACGTGTTGCTGAGCCTACTGCTTCAACCCTCAGTCTG
823 AAGCCGGGGATCGATCGGGTCCCACTCTACGTGCTGCCGAGCCTACTGCCGCAACCCTCAGTCTG
*
18254249 GTCTGATCATAGACTG
888 GTCTGATCATAGACTT
* * *
18254265 GGAATGAACTCCGTATGCCTGA-CCTAACCGATGAAACGAGCGG-GTGCGGGAGGGCGGGCACT-
1 GGAATGAACTCCGTATGCCTAAGCC-AACCGACGAAACGAGCGGCGGGCGGGAGGGCGGGCACTA
* * * *
18254327 CACCAATCCA-AGAGTCGGGATGCGC-AGCCGTGGATCGATAGGGTGCTA-GTGGGTTTAGGCAC
65 CGCCGA-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
18254389 ATCTTCATATTTCTACGTGCCAATGCCATTTTT-TGGCTTGTAAATTCATACAATGGT-CCTTAA
129 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
18254452 GCCTTCA-GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCTTGATTTTTGAAACTTTT
194 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
*
18254516 TGCGGTTCGGGATTTTTTAAAATTTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGA
259 TGCGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * *
18254581 TCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATCAGCTAAAATCTCGTAGTGTACAAGATTTTG
323 TCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * *
18254646 TGACCATTTGAAAAAAGTGTCCCCATTCTAGACACTTGAATGGCTACTGGCAACAAACCTGTAAA
387 TGACCATTTGAAAAAAGTGTCCCCATT-TAGACACTTTAATGGCTACTGGCAGCAAACCTATAAA
* * * * *
18254711 ATCTGATAGGCCCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATA
451 ATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * * *
18254776 AGGGCCAAGTACCAGCACCCATCTCACATCATGTGTGTACACCCCCCCGTCGGCCCCCCGATCAT
516 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGCCAGCCCCCCGATCGT
* * * * * *
18254841 CGTAACCCCAATGCCGTCGGTCAGGTTCTTCGGTGATGCTCCGACGATGGTGCCTCGATGACGAA
581 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGACGAA
* * *
18254906 AAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTTGTCTGATC
646 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATC
* *
18254971 TTAGACTGGGAATGAACTCCATATGCTTAAATTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
711 TTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* *
18255036 CGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGAAATGCGCAAGCCGGGGATCGATCGG
776 CGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGG
* * * *
18255101 GTCCCACTCTACGTGTTGCCGAGCCTACTACCGTAACCCTCGGTCTGGTCTGATCATAGACTT
841 GTCCCACTCTACGTGCTGCCGAGCCTACTGCCGCAACCCTCAGTCTGGTCTGATCATAGACTT
* *
18255164 GGAATGAACTCCGTATGCCTAAGCGAACCGACGGAACGAGCGGGCGGGCGGGAGGGCGGGCACTA
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGAGGGCGGGCACTA
* * *
18255229 TGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACA
65 CGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
18255294 TCTTCATATTTCTGCGTGCCAATGCTATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAG
130 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
18255359 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTATTCATGATTTTTGAAACTTTTT
195 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* * * *
18255424 ACGGTTTGGGATTTTTTAAAATTTTTTTC-GAAGGAGTTTTAGCCCCAAACTTGGTAGACATGAT
260 GCGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
**
18255488 CCTTGTATTTTTTTAGGCATGCACAAAAAAATTCAGCTAAAAACTAAAAGTGTACAAGATTTTGT
324 CCTTGTATTTTTTT-GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
18255553 GACCATTTGAAAAAAGTGTCCCCACTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAA
388 GACCATTTGAAAAAAGTGTCCCCA-TTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAA
**
18255618 TCTCAAATGCTCTTTAA-GAGGTGCCAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
452 TCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
** * * *
18255682 GGGCCATA-TACCAGCACCCATCGCACATCATGTGCGTACACCCGTCTGCCAGCCCCTCGATCAT
517 GGGCCA-AGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGCCAGCCCCCCGATCGT
* *
18255746 CGGAACCCCAATGACGCCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACGACGAA
581 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGACGAA
* * * * *
18255811 AAATGCGGCACCAGCACATGCTCGAGCCTAGCAAGTGCTGCCGCAACCCTCAGTCCGGTCTGATC
646 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATC
*
18255876 TTAGACT-GGAATGAACTCCGTATGCTTAAACTAGGAATGAACTCCGTATGCCTAAGTCAACCCA
711 TTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* *
18255940 CGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGAAATGCGCAAGCCGGGGATCGATCGG
776 CGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGG
* * *
18256005 GTCCCACTCTACGTGTTGCCGAGCCTACTGCCGCAACCCTCGGTCTGGTCTGGTCATAGACTT
841 GTCCCACTCTACGTGCTGCCGAGCCTACTGCCGCAACCCTCAGTCTGGTCTGATCATAGACTT
* *
18256068 GGAATGAACTCCGTATGCCTAAGCGAACCGACGAAACGAACGGACGGGCGGGAGGGCGGGCACTA
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG-CGGGCGGGAGGGCGGGCACTA
* *
18256133 CGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACA
65 CGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
18256198 TCTTCATATTTCTGCGTGCCAATGCTATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAG
130 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
18256263 CCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCTTGATTTTTGAAACTTTTT
195 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* *
18256328 GCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGCGTTTTGGCCCCAAACTTGGTA-ACGTGATC
260 GCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
18256392 CTTGTATTTTTTTGGACATGCACAAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
325 CTTGTATTTTTTTGG-CATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * * *
18256457 GACCATTTGAAAAAGGTGTCCCCATTTTAGACACCTTAATGGCTA-TCGGCAACAAACCTGTAAA
388 GACCATTTGAAAAAAGTGTCCCCA-TTTAGACACTTTAATGGCTACT-GGCAGCAAACCTATAAA
* * *
18256521 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGTTAGGGGGCCAATATA
451 ATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * * *
18256586 AGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCGCCGGC--CCCCCCGATCGC
516 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGCCAGCCCCCCGATCGT
* * * ** * * ** * * *
18256649 CGTATCCCTAATGCTACCAGTCAAGTTCTCCGACGATGCAT-CGACGATGGTGCCCCGAGGAAGA
581 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGC-TCCGGCGATGGTGCCCCGACGACGA
* * * * *
18256713 AAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCACAACCCTCGATCTAGT-TCGA
645 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCT-GA
* * * * * * *
18256777 TCTCAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATAAACGCCATATGCCAAAGTCAACC
709 TCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * *
18256842 CACGAAACGAGCTTGCGGGGGCTCAGCCGGCCA-ATGGGGC-AGGACGCACAAGCCGGGGATAGA
774 CACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGA-GGGGCGA-GATGCGCAAGCCGGGGATCGA
* * * ** ** * * * *
18256905 TCAGGTCCCTCTCTAAGTGCTGTTGA-TATGCCTGCCGCAACCCTTAGTCCGGTCTGATCTTAGA
837 TCGGGTCCCACTCTACGTGCTGCCGAGCCT-ACTGCCGCAACCCTCAGTCTGGTCTGATCATAGA
*
18256969 CTG
901 CTT
* * * * * * *
18256972 GGAATTAACTCCGTATGCCTAAGCTAACCGACGAAATGAGCGGGCGGGCGAGCA-AGCAGGCTCT
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCG-GGAGGGCGGGCACT
* * * * * *
18257036 ACGCCTACCAAAGAGACAGGATGCGAAAGCCGTGGATCGATAGGGTGCTAGGTGGGATTAGGCAC
64 ACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
18257101 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
129 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * **
18257166 GCCTTCACGTGAAGTTGCATGGCAAGGACGACTCGTGTTCTA--TTTCACGATTTTCAAAAACTT
194 GCCTTCACGTGAAGTTTCATGGCAA-GACGACTCGTTTTCTATTTTTCATGATTTT-TGAAACTT
* *
18257229 TTTACGGTTCGAGATTTTTTAAAATTTTTTC-GAAGGAG-TTTGGCCCCAAACTTGGTAGACGTG
257 TTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
18257292 ATCCTTGTATTTTTTTTGGCATGCACAAAACAAA-TCAGCGAAAAACTCGAAGTGTACAATATTT
322 ATCCTTGTA-TTTTTTTGGCATGCACAAAA-AAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
18257356 TTTGA-CATTTGAAAAAAGTGTCCCCATTGTCAGACACTTTAATGGCTACTTGGCGCAGACAAA-
385 TGTGACCATTTGAAAAAAGTGTCCCCATT-T-AGACACTTTAATGGCTAC-T-G-GCAG-CAAAC
* *
18257419 CTACTAAAATCTCAAATGCTCTTTAAGG-GGGGTG-GTTCTCAAGGTTTGATGAGGG-TA-GGGG
444 CTA-TAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * ** *
18257480 CCAATATAAGGGCCAAGTATCAGCACCCATCGGCCACTCATCATGTGCGCACACCAGCCCGCCAA
508 CCAATATAAGGGCCAAGTACCAGCACCCATC-G-CA--CATCATGTGCGTACACCCCCCCGCCAG
* * * *
18257545 CCCCCCAGAATCGCCGGAACCCTAATGCCGGCCGATCAAGGTTTCTCCGGTG--GAT--GG-G-T
569 CCCCCC-G-ATCGTCGGAACCCCAATGCC-GCCGGTC-AGG-TTCTCCGGTGATGCTCCGGCGAT
* ** * * * * * *
18257604 --TGCCTCGGTTGATG-AAATTGGCGAGCACCAGGCACATGGCTCGAAGCCTAGCAAGTGGTTGC
629 GGTGCC-CCGACGACGAAAAAT-GCG-GCACCA-GCACAT-GCCCG-AGCCCAGCATGT-GCTGC
* * * ** * * **
18257666 CGCAACCCTCAGTCCGCTCCAATCTTCAGACTGGCAAT-AAATCATATATGCTTAAACTGGGAAT
687 CGCAACCCTCGGTCTGGTCTGATCTT-AGACTGGGAATGAACTC-CGTATGCTTAAACTGGGAAT
* * *
18257730 GAACTTCGTTATGCCTAAGTTCAACCCGTA-GAATACGAGCGTGCGGGCGCTCAGGTCGGCCAGA
750 GAACTCCG-TATGCCTAAG-TCAACCC--ACGAA-ACAAGCGTGCGGGCGCTCA-GCCGGCCAGA
* * * * * * * * * *
18257794 GCGGC-AGGATGCGC-AGTCGAGGATCGATCGGGTCCCCCTCTGCATGTTGCCGATCCTGCTACC
809 GGGGCGA-GATGCGCAAGCCGGGGATCGATCGGGTCCCACTCTACGTGCTGCCGAGCCTACTGCC
* *
18257857 GCAA-CCTCAGTCTGGTCT-ATTC-TCATACTA
873 GCAACCCTCAGTCTGGTCTGA-TCAT-AGACTT
* * * *
18257887 GGAAT-AACTCCCGTCATTTTATAACCTAAGCCTACTGACGAATACGAGCGGCAGGC-----GGC
1 GGAATGAACT-CCG------TAT-GCCTAAGCCAACCGACGAA-ACGAGCGGCGGGCGGGAGGGC
** * * * ** * *
18257946 GGGCACTACGTTGGCCAGAGAGAGGGGATGCAC-AG-TAT-GATCGAACAGGGGTGGTAGGCGGG
57 GGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCG-ATA-GGGTGGTAGGTGGG
*
18258008 TTTA-GC-CATTCTTCATA-TTCTACGTTGCCAATG-CA-TTTTATGGCTTGTAAATTCATACAA
120 TTTAGGCACA-TCTTCATATTTCTGCG-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
18258068 TTGGTCCCTTAAGCCGTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATT
183 -TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
** * * * * *
18258133 TTCAAAACTTTTTACAGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGCCCCCAAACTT
247 TTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
*
18258198 GGTAGACGTGATCCTTGTATTTTTGCTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGT
312 GGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
18258262 ACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAAACACTTTAATGGCTACTGACAGC
376 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-AGACACTTTAATGGCTACTGGCAGC
* * **
18258327 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAATTTTGATGAGGGATAGG
440 AAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
** * **
18258392 GGGCCAATATAAGCACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG--AAA
505 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGCCAGC
* * * * * *
18258455 CCCCCGATCGTCAGAACGCCAATGCCGTCGGTCAGGTTCTCCAGCGATGCTCCAGCGATGGTGCC
570 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCC
* * * **
18258520 CC-A-G-CG---AA----G-A--A--AAATACCCGAGCCTAATATGTGCT-CCTGCAACCCTCGG
635 CCGACGACGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC-GCAACCCTCGG
18258569 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAA-TCCCGTATGC
699 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACT-CCGTATGC
* * * * * ** * * *
18258633 CTGACTCAACCCACGAAACGAA-TGTGCAGGCACTCAGTAGGCCAGAGGGGCGGGATGTGCAAGT
763 CTAAGTCAACCCACGAAAC-AAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGC
* * * * * * *
18258697 CGGGGATTGGTCGGGTCCC-CTTCTATGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGGTC
827 CGGGGATCGATCGGGTCCCAC-TCTACGTGCTGCCGAGCCTACTGCCGCAACCCTCAGTCTGGTC
*
18258761 TGATC-TGAGACTA
891 TGATCAT-AGACTT
* * *
18258774 GGAATGAACTTCGTATGCCTAAGCCAACCGATGAAATGA----C---C----GGGCGGGCACTAC
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGAGGGCGGGCACTAC
* * * * * * * * *
18258828 GCCGGCCAGAGAGACGAGTTGCGTAAGCCCTGGATCGATAGGGTGGCAGGCGGGTTTAGCCATAT
66 GCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
18258893 CTTCATATTTCTACGTGCCAATGCCA-TTTTATGGCTTGTAAATTCATACACTGGTCCCTTAAGC
131 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * ** **
18258957 CTTCATGTGAAGTTTCATGGCAAGATGAGTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTG
196 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTG
* **
18259022 CAG-TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGAACCCAAACTTGGTAGACGTGATCC
261 CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
18259086 TTGTATATTTGTTGGCATGCACAAACAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
326 TTGTAT-TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
18259151 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCATTGGCAGCAAACCTATAAAATC
390 CCATTTGAAAAAAGTGTCCCCATTT-AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATC
* * * * *
18259216 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGTGATAGGGGGCTAATATATGG
454 TCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* *
18259281 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCCCGGC--CCCCCCGATCGTCG
519 GCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCC-CCCCGCCAGCCCCCCGATCGTCG
* * * *
18259344 GAACCCCAATGCCGCCGATCAGGTTCTCC---GA--------CGATGGTGCACCGATGAAGAAAA
583 GAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGACGAAAA
* *
18259398 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTT
648 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTT
** * * * * *
18259463 TCACTAGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCTCG
713 AGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * *
18259528 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG-GAATGCGCAAGCCGAGGATCGACCGGG
778 AAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAG-ATGCGCAAGCCGGGGATCGATCGGG
* ** * * * * * * * * *
18259592 TCCTC-CTCTGCGTGCTGTTGATCTTGCTACCACAACCCT-TGGCTCGATCTGATCTTAGA-TT
842 TCC-CACTCTACGTGCTGCCGAGCCTACTGCCGCAACCCTCAGTCT-GGTCTGATCATAGACTT
* *
18259653 GGGAATGAGCCCCGTATGCCTAAGCCAACCGACGAAACGAG
1 -GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
18259694 TGGGTGGGTG
Statistics
Matches: 7188, Mismatches: 755, Indels: 450
0.86 0.09 0.05
Matches are distributed among these distances:
865 11 0.00
866 1 0.00
867 1 0.00
868 1 0.00
871 2 0.00
872 1 0.00
873 31 0.00
874 92 0.01
875 297 0.04
876 83 0.01
878 1 0.00
879 9 0.00
880 233 0.03
881 9 0.00
885 20 0.00
886 57 0.01
887 33 0.00
888 12 0.00
889 9 0.00
890 35 0.00
891 26 0.00
892 9 0.00
893 3 0.00
894 3 0.00
897 1 0.00
899 169 0.02
900 368 0.05
901 185 0.03
902 130 0.02
903 228 0.03
904 1283 0.18
905 1295 0.18
906 806 0.11
907 161 0.02
908 65 0.01
909 70 0.01
910 59 0.01
911 97 0.01
912 52 0.01
913 154 0.02
914 443 0.06
915 193 0.03
916 185 0.03
917 207 0.03
918 17 0.00
919 12 0.00
921 3 0.00
922 21 0.00
923 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (903 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGAGGGCGGGCACTAC
GCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTG
CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
TTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTC
AAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGCCAGCCCCCCGATCGTCGGAA
CCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGACGAAAAATG
CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGA
CTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCC
ACTCTACGTGCTGCCGAGCCTACTGCCGCAACCCTCAGTCTGGTCTGATCATAGACTT
Found at i:18256829 original size:26 final size:26
Alignment explanation
Indices: 18256781--18256830 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
18256771 GTTCGATCTC
* * * *
18256781 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTAGGAATAAACGCCATATGCTT
18256807 AGACTAGGAATAAACGCCATATGC
1 AGACTAGGAATAAACGCCATATGC
18256831 CAAAGTCAAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (26 bp):
AGACTAGGAATAAACGCCATATGCTT
Done.