Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 104 of 117
Found at i:18258616 original size:26 final size:26
Alignment explanation
Indices: 18258580--18258632 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18258570 CTGGTCTGAT
*
18258580 CTTAGACTGGGAATGAA-CTCCGTATG
1 CTTAAACTGGGAATGAATC-CCGTATG
18258606 CTTAAACTGGGAATGAATCCCGTATG
1 CTTAAACTGGGAATGAATCCCGTATG
18258632 C
1 C
18258633 CTGACTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAATCCCGTATG
Found at i:18259810 original size:129 final size:129
Alignment explanation
Indices: 18259580--18259822 Score: 344
Period size: 129 Copynumber: 1.9 Consensus size: 129
18259570 CGCAAGCCGA
* * * * * * *
18259580 GGATCGACCGGGTCCTCCTCTGCGTGCTGTTGATCTTGCTACCACAACCCTTGGCTCGATCTGAT
1 GGATCGACCGGGTCCCCCTCTGCATGCTGTCGAACCTACTACCACAACCCTTGGCTCGATCAGAT
* * *
18259645 CTTAGATTGGGAATGAGCCCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGTGGGTGGGCGG
66 CTTAGACTGAGAATGAACCCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGTGGGTGGGCGG
** *
18259709 GGATCGATTGGGTCCCCCTCTGCATGCTGTCGAACCTACTACCACAACCCTTGGTCTGGA-CAGA
1 GGATCGACCGGGTCCCCCTCTGCATGCTGTCGAACCTACTACCACAACCCTTGG-CTCGATCAGA
*
18259773 TCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
65 TCTTAGACTGAGAATGAACCCCGTATGCCTAAGCCAACCGACGAAACGAG
18259823 CGTTTTCTAT
Statistics
Matches: 99, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
129 95 0.96
130 4 0.04
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.22
Consensus pattern (129 bp):
GGATCGACCGGGTCCCCCTCTGCATGCTGTCGAACCTACTACCACAACCCTTGGCTCGATCAGAT
CTTAGACTGAGAATGAACCCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGTGGGTGGGCGG
Found at i:18262584 original size:721 final size:719
Alignment explanation
Indices: 18260767--18263816 Score: 4420
Period size: 721 Copynumber: 4.2 Consensus size: 719
18260757 TGGGCCACGT
* * * * * * * *
18260767 ACCCCCCCAATCATCGGAACCCCAATGCC-ACTGGTTAGGTTCTCCGATGATGCTCTGGCGATGG
1 ACCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCGGTGAAGG
*** * * * *
18260831 TGCCCCGACGAAGAAAAATATAGCACCAGCAAAAGCCCGAGCCCAGCATGTGCTGCCGTAACCCT
65 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCT
* * ** * * * * *
18260896 CGGT-CAGTTTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACTGACGAAACGAGC-
130 CGATCCGGTCCGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAACG
** * * * * *
18260959 GGAAGGCGGGTGGGCGGGCACTACGCCAGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAG
195 GGCGGGCGAGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
*
18261024 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACACGCCAATGCCATTTTTATGGCTTGTA
260 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTA
* * * *
18261089 AATTTAGAGAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCGTTTTCTAAT
325 AATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * * *** *
18261154 TTTCATGATTTTTGAAACTTTTTGCAGTTCGTGATTTTTTAAAATTTTTTCGGAAAGCTTTTTTG
390 TTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGATTTGG
** * * * *
18261219 CCCCAAACAGGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCATAAAAAAATTCAGCGAAAAA
455 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGATGGCATGCACAAAAAAATTCAGCTAAAAA
* *
18261284 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGC
520 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGA
*
18261349 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGAT
585 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGACTTCTCGAGGTTTGAT
* * *
18261413 GAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCC
650 GAGAGATAGGGGGCCAATAAAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
*
18261478 GCCTCG
715 -CCCCG
* * * * * *
18261484 GCCCCCCCGATCGTCGGAACCCCAATGCCGTCAGTCAGATTCTCCGGCGATGCTTCGATGAAGGT
1 ACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGAAGGT
** * *
18261549 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGGTCGAGCCCAGCATGTTCTGTAGCAACCCTC
66 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTC
*
18261614 GATCCGGTCCAATCCTAGACTGGGAATGAACTCC-TATGCCTAAGCCAACCGACAAAACGAACGG
131 GATCCGGTCCGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAACGG
* *
18261678 GCGGGCGAGCGGGCGGTCACTACACTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
196 GCGGGCGAGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
*
18261743 GTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
261 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
* * *
18261808 ATTTATACAATGGTCCATTACGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTT
326 ATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
18261873 TTCACGATTTTTGAAACTTTTTGCGGTT-GAGGATTTTTTTAAAATTTTTTCAGAAGGAGATTTG
391 TTCACGATTTTTGAAACTTTTTGCGGTTCG-GGA-TTTTTTAAAATTTTTTCAGAAGGAGATTTG
*
18261937 GCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGATGGCATGCACAAAAAAATTCAGCTAAAA
454 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGATGGCATGCACAAAAAAATTCAGCTAAAA
** * *
18262002 ACTCGAAGTGTACATCATTTTGTGACCATTTGAAAAAAGTGTGCCCATTTCAGACACTTTGATGG
519 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * **
18262067 ATACTGGCAACAAACTTGTAAAATCTCAAATGCTCTTTAATGATGTGTGACTTCTCGAGGTTTGA
584 ATACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGACTTCTCGAGGTTTGA
* * * *
18262132 TGAGAGATAGGGGGCTAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATTTGCGCACACC
649 TGAGAGATAGGGGGCCAATAAAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
18262197 CTCCCCG
714 C-CCCCG
* *
18262204 ACCCCCCCGATCGTCGAAACCCCAATGCCGTCAGTCAGGTTCTCCGACGATGCTCCGGTGAAGGT
1 ACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGAAGGT
* * * *
18262269 GCCCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGGGCCCAGCATGTGCTGCAGCAACCCTT
66 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTC
* *
18262334 GATCTGGTCCGATCCTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAACGAACGG
131 GATCCGGTCCGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAACGG
*
18262399 GCGGGCGAGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGG
196 GCGGGCGAGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
*
18262464 GTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
261 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
*
18262529 ATTTATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
326 ATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
*
18262594 TTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGATTTGG
391 TTCACGATTTTTGAAACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTTCAGAAGGAGATTTGG
18262659 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGATGGCATGCACAAAAAAATTCAGCTAAAAA
455 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGATGGCATGCACAAAAAAATTCAGCTAAAAA
18262724 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGA
520 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGA
*
18262789 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGACTTCTCGAGTTTTGAT
585 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGACTTCTCGAGGTTTGAT
* **
18262854 GAGAGATAGGGGGCCAATAAAAGGGCCAAAG-ACCAGCACCCAACGCACATCATGTGCATACA-C
650 GAGAGATAGGGGGCCAATAAAAGGGCC-AAGTACCAGCACCCATCGCACATCATGTGCGCACACC
18262917 CCCCCG
714 CCCCCG
* * * * * ** *
18262923 -GCCCCCCGATTGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTATCTGACGATG
1 ACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC--TCCGGTGAAG
* * *
18262987 GTGCCCCGGA-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGGTGCCGTAACC
64 GTGCCCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACC
* * *
18263051 CTAAGTCCGGTCCGGTCTGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACAAA
128 C----T-CGATCCGGTCCGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA
* * * * *
18263116 ACGAGCGGGTGGGC-AGGCGGGCGTGCACTACACCGACCAGAGAGACGGGATGTGCAAGCCGTGG
188 ACGAACGGGCGGGCGA-GCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
**
18263180 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTAT
252 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
* * *
18263245 GGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGT
317 GGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
*
18263310 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGT
382 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAG-
* * * * **
18263375 CA-TTTTGGCCCCAACCTTGGTAGACATGATCCTTGT-TTTTTCTTTGGCATGCACAAAAAAATT
446 GAGATTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-GATGGCATGCACAAAAAAATT
* *
18263438 CAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACA
510 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * * *
18263503 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTCAGGGGGTGTGAGTTCTC
575 CTTTAATGGATACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGACTTCTC
* * *
18263568 GAGGTTTAATGAGGGATAGGGGGCCAATAAAAGGGCCAAGTACCAGCACCCATCACACATCATGT
640 GAGGTTTGATGAGAGATAGGGGGCCAATAAAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
*
18263633 GCGCACACCCCCCAG
705 GCGCACACCCCCCCG
* * *
18263648 ACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGATGATGCTCCGGT-AATGG
1 ACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGAA-GG
* *
18263712 TGCCTCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCA-CAACCC
65 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CAGCAACCC
* * * *
18263776 TCGATCTGGTCCGATCTTAGATTGGGAATGAACTCCATATG
129 TCGATCCGGTCCGATCCTAGACTGGGAATGAACTCCGTATG
18263817 ATTAGACTGG
Statistics
Matches: 2102, Mismatches: 205, Indels: 50
0.89 0.09 0.02
Matches are distributed among these distances:
717 130 0.06
718 278 0.13
719 218 0.10
720 300 0.14
721 519 0.25
722 4 0.00
723 11 0.01
724 318 0.15
725 279 0.13
726 45 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (719 bp):
ACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGAAGGT
GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTC
GATCCGGTCCGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAACGG
GCGGGCGAGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
ATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGATTTGGC
CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGATGGCATGCACAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGAT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGACTTCTCGAGGTTTGATG
AGAGATAGGGGGCCAATAAAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCCG
Found at i:18263828 original size:26 final size:26
Alignment explanation
Indices: 18263792--18263842 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18263782 TGGTCCGATC
*
18263792 TTAGATTGGGAATGAACTCCATATGA
1 TTAGACTGGGAATGAACTCCATATGA
*
18263818 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
18263843 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGA
Found at i:18264730 original size:26 final size:26
Alignment explanation
Indices: 18264694--18264746 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18264684 CCCGTCCGAT
* *
18264694 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18264720 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18264746 C
1 C
18264747 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18265623 original size:26 final size:26
Alignment explanation
Indices: 18265583--18265635 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18265573 CTGATCTGAT
* *
18265583 CTTAGACTGGTAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18265609 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18265635 C
1 C
18265636 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18268081 original size:26 final size:26
Alignment explanation
Indices: 18268045--18268097 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18268035 CTGGTTTGAT
*
18268045 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18268071 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18268097 C
1 C
18268098 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18268690 original size:26 final size:26
Alignment explanation
Indices: 18268654--18268706 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18268644 CCAGTTTGAT
18268654 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
18268680 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18268706 C
1 C
18268707 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18270413 original size:26 final size:26
Alignment explanation
Indices: 18270362--18270414 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18270352 TCGGTCCGAA
* *
18270362 CTTAGGCTGGCAATGAACTTCATATG
1 CTTAGACTGGCAATGAACTCCATATG
* *
18270388 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
18270414 C
1 C
18270415 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:18270808 original size:893 final size:892
Alignment explanation
Indices: 18268841--18277548 Score: 10194
Period size: 893 Copynumber: 9.9 Consensus size: 892
18268831 GGTCTGATCT
* * * *
18268841 GCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCAATAGGGTCGTAGGTGGGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * * *
18268906 GGCACATCTTCCTATTTCTACGTGCCAATTCCTTTTTTATGGCTTGTAAATTCAAACAATGGTCC
66 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
18268971 CTTAAGCCTTCACGTGAAGTTTCGTGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAA
131 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
* * * *
18269036 CTTTTTAAGGTTCA-AGATTTTTTTAAATTTTTTTGAAAGG-GATTTTGGCCTCAAACTTGG-AG
196 CTTTTTACGGTTCAGA-ATTTTTTAAAATTTTTTCGAAAGGAG-TTTTGGCCCCAAACTTGGTAG
* * * **
18269098 ACGTGATCCTTGTATTTTTCTTGGCATGCATAAAAAAATTCAGATAAAAAGACGAAGTGTACAAG
259 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
18269163 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACAGGCAACAAACC
324 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
18269228 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAAGTTTGATG-AGAGATAGGGGGC
389 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAG-GATAGGGGGC
* *
18269292 CAATATAAGGGCCAAGTACCAGCACCCAGCGCACATCATGTGCGCACACCCCTCCAGCCACCCCG
453 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCC-CCCCG
* * * * *
18269357 ATTGCCGAAACCCCAATGCCGTCGGTCATGTTC-TCCAGTGATGCTCCAGTGATGGTGCCCCGGC
516 ATCGCCG-AACCCCAATGCCG-CGGTCAGGTTCATCGA-TGATGCTCCGGTGATGGTGCCCCGAC
* * ** *
18269421 GAAGAAAATTACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAA-CCT---TT--G-
578 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTTCGGT
18269479 --G----T---CT-GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
643 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
18269525 AACCTACGAAACGAGCGTGCAGGCACTCAGCCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATC
708 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATC
* ** * * * * *
18269590 GGCTGGGTCCCCCTCTGCGTGCTATCGATCCTGTTGCCGCAACCCTCAGTCCAGT-TCATTCTTA
773 GGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCCGGTCT-AATCTTA
* * * *
18269654 GACTGGGAATGAACTTCGTGTGCCTAAGCCAACCAACGAAACGAGCGGACTGGCGGGTGG
837 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-G---GGCGGGCGG
* *
18269714 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
** * **
18269779 GGCACATCTTCATATTTCTATGTGCCAATGCGATTTTTATGGCTTGTAAATTCATACAATTATCC
66 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * * *
18269844 GTTAGGCCTTCATGTGAAGTTTCATGGCAAGACGACACATTTTCTATTTTTCACGATTTTTAAAA
131 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
* * * * * *
18269909 CTTTTTACGGTTC-GAATTTTTTAAAATTTTTTCGAAAGGATTTTTAGTCCTAAATTTGGTAGGC
196 CTTTTTACGGTTCAGAATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
18269973 ATGATCCTTGTATTTTTGTTGGCATACACAAAAAGATTCAGCTATAAACTC-AATGTGTACAAGA
261 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA-GTGTACAAGA
*
18270037 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCT
325 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * *
18270102 GTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTTTCGAGGTTTGATGAAGGATAAGGGGCGA
390 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCA
* *
18270167 ATATAAGGGACAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGGCCGCCCCGATC
455 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-CCCCGATC
* * *
18270232 GTCGAACCCCAATGTCGTCGATCAGGTTCATCGATGATGCTCCGGTGATGGTGCCCCGACGAAGA
519 GCCGAACCCCAATGCCG-CGGTCAGGTTCATCGATGATGCTCCGGTGATGGTGCCCCGACGAAGA
* ** * *
18270297 AAAATACGGCACCAGCACATGTTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGAA
583 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTTCGGTCCGAT
* * * *
18270362 CTTAGGCTGGCAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
648 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
18270427 ACGAAACGAGCGTACGGGCGCTCAGCAGGCCAGAGGGGCGGGACGTGCAAGCCGGGGATCGGTCG
713 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCG
* * * * ** *
18270492 GGTCCCCCTTTGCGTGCTGTCGATCTTGCTACCGTAACCCTCGGTTTGGTCTGATCTTAGACTGG
778 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCCGGTCTAATCTTAGACTGG
* *
18270557 GAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGTGG
843 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* * *
18270607 GCACTACGTCGGCCAGACAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
18270672 GGCACATCTTCATGTTTCTACGTGCCAATGCCATATTTATGGCTTGTAAATTCATACAATGGTCC
66 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
18270737 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTCAAAA
131 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
* ** **
18270802 CTTTTTACGGTTC-GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGGTCCAAACTTCTTAGA
196 CTTTTTACGGTTCAGA-ATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * * * *
18270866 GGTGATCCTTTTATTTTT-TTGGCATGCACAAAAAAGTTTAGGTAAAAACTCGAACTGTACAAGA
260 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
18270930 TTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCT
325 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
18270995 GTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTGCTC-AGGTTTGATGAGGGATAGGGGGCCA
390 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCA
* * * * * *
18271059 ATATAGGGGGCAAGTAGCAGCACCCATCTCACATCATGTGTGCACACCCCCCCAGCCCCTCCGAT
455 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCC-CCGAT
** * * * * * * * *
18271124 CGTTGGAACCCCAATGCCGCCAGTTAAGTT-TTCTGACGATCCTCCGGCGATGGTGCCCCAACGA
518 CG-CCGAACCCCAATGCCG-CGGTCAGGTTCATC-GATGATGCTCCGGTGATGGTGCCCCGACGA
* * * *
18271188 AGGAAAATGCGGCACCAACACATGCCCGAGCCCAGCATTTGCTGCTGTAACCCTCGG-TCTGGTC
580 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTTC-GGTC
* * *
18271252 TGATCTTAGACTGCGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
644 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* *
18271317 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAG-CAGGGATCG
709 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCG
* * * * * *
18271381 GCCGGGTCCCCCTCTGTGTGTTGCCAATCCTGCTGCC-CAACCCTCAGTCTGGTCTAATCTTAGA
774 GCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCCGGTCTAATCTTAGA
* *
18271445 CTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC---C-G
839 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* * *
18271495 GCACTACGCCAGCCAGAGAGATGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * **
18271560 GGCACAACTTCATGTTT-TTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
66 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
18271624 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACTATTTTCAAAC
131 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
* * * ** * * * *
18271689 CTTTTCTGCAGTTCA-AGATTTTTAAAAAAATTTTCGGAATGAGTTTTGGCCCCAAACCTGGAAG
196 CTTTT-TACGGTTCAGA-ATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * * * * *
18271753 AAGTGATCCTCGTATTTTTGTTAGCATGCATAAAAAAATTCAGCTAAAACCGCGAAGTGTAGAAG
259 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
18271818 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACT
324 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
18271883 TATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATA-GGGGCC
389 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCC
*
18271947 AACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-----C--CCCCCCGATC
454 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATC
** ** *
18272005 GTGGAACCGTAATGCCGC---C-GGTT-A--G--G-TTCTCCGGTGATGGTGCCCCGACGAAGAA
519 GCCGAACCCCAATGCCGCGGTCAGGTTCATCGATGATGCTCCGGTGATGGTGCCCCGACGAAGAA
* * * * * * * * *
18272060 AAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGTTGTCGTAACCCTCAGTCCGATTCAATC
584 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTTCGGTCCGATC
* * * * *
18272125 TTAGACTAGGAATGAACTCCGTATGCTTAGACGGGGAATGAACTCCATATGCCTATGTTAACCCA
649 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * ** ** * *
18272190 TGAAACGAGCGTGCGGGCACTTAGCCGATCAGAGGACCAGGATGCGTAAGTCGGGGATCGGCCGG
714 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGG
* ** * * *
18272255 GTCCCCCTCTGCGTGCTGCCGATCTTGCTATCGCAACCCTCGATCGGGT-TCAATCTTAGACTGG
779 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCCGGTCT-AATCTTAGACTGG
18272319 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGGCGG
843 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GC--G-GG-CGGGCGG
* * *
18272377 GCACTATGCCGGCCAGAGAGACAGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * *
18272442 GGCACATCTTCATATTTTTGGGTGCCAATGCGATTTTTATGGCTTGTAAATTCATACAATTGTCC
66 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
18272507 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTCAAAA
131 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
* * *
18272572 CTTTTTACAGTTC-GAGATTTTTTAAAATTTTTTTTGGAAA-GAGTTTTGGCCCCAAACATGGTA
196 CTTTTTACGGTTCAGA-ATTTTTTAAAA--TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
18272635 GATGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAAATCGAAGTGTACAA
258 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* **
18272700 GATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGAATACTGGCAGCAAAC
323 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* **
18272765 CTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGGGGGATAGGGGGC
388 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGC
* * * * * * * *
18272830 AAATATAAGGGCCAAGTTCGAGCACCCATCGCACGTCATGTGCACAAACCCCCTAGCCCCCCCGA
453 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCGA
* * * * *
18272895 TCGCCGGAACCCTAATGCCAC---C-GGTT-A--G--G-TTCTCCGATGATGGTGCCCTGACGAA
517 TCGCC-GAACCCCAATGCCGCGGTCAGGTTCATCGATGATGCTCCGGTGATGGTGCCCCGACGAA
* * *
18272950 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCAGTCCG
581 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTTCGGTCCG
* * *
18273015 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGAATGAACTCCATATGCCTAAGTCAAC
646 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * *
18273080 CCATGAAACGAGCGTACGGGCGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGT
711 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGC
* * * * * * * * *
18273145 CGGGTCCCCCTCAGCGTGCTGCAGATCCTACTGCTGTAACCCTTGTTTCGGTCTGATCTTAGATT
776 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCCGGTCTAATCTTAGACT
* * * * **
18273210 AGGAATGAACTCGGTATGCCTAAGCCAGCCGACAAAACGAATGGGCGGGCGG
841 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* *
18273262 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATTGATAGGGTGGTAGGTGGGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
18273327 GGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
66 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
18273392 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
131 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
* * * *
18273457 CTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTCTGGCCCCAAACTTGGTAGAA
196 CTTTTTACGGTTCAGAATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
18273522 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC--CAAA----AAGTGTACAAGAT
261 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
18273581 TTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC-TTAATGGCTACTGGCAGCAAACCTG
326 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * ** *
18273645 TAAAATCTCAAATACTCTTCAAGGGGGCATGAGTTCTAGAGGTTTGATG-AGCGATAGGGGGCCA
391 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAG-GATAGGGGGCCA
** * *
18273709 ATATAAGGGCCAAGTACCAGCACCCATCATACATCATGTGCGTACACCCCCCGGCCCGCCCAATC
455 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCGATC
* ** ** *
18273774 GCCGAAACCCCAATGCCGCTGGTCAGGTT-TTCTGACAATGCTCCGACGATGGTGCCCC-AGTGA
519 GCCG-AACCCCAATGCCGC-GGTCAGGTTCATC-GATGATGCTCCGGTGATGGTGCCCCGA-CGA
* * *
18273837 AGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCTACCGTAA--C-C----C--T-C
580 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTTCGGTCC
18273892 GA---T---CT-GG--T----T-CG-A-GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
645 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * ** *
18273941 CCCATTG-AACGAGCGTGCGAGCGCTCAGCCGGCGAGAGGGAAGGGATACGCAAGTCGGGGATCG
710 CCCA-CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCG
* * * * * * ** *
18274005 GCCGGGTCCCCCTTTGCGTGTTACCGATCCTGCTGTCGTAACCCTGGGTCCGATCCGATATTAGA
774 GCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCCGGTCTAATCTTAGA
* * * *
18274070 CTAGGAATGAACTTCGTATGCCTAAGCCAACCGAGGAAACGAGTGGGTGAGCGGGCGGGCGA
839 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--------GAGCGGGCGGGCGG
* *
18274132 GCACTACGCCGGCTAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
18274197 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
66 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
18274262 CTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCACGATTTTCAAAA
131 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
* * * *
18274327 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
196 CTTTTTACGGTTCAGAATTTTTTAAAA-TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
18274392 CGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAAAATTCAGCT--AAA----AAGTGTAGAAGA
260 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
18274451 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT-ATGGCTACTGGCAGCAAACCT
325 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
18274515 ATAAAATCTCAAATGCTCTTTCAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
390 GTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCC
* * * * * * *
18274579 ACTATAAGGGCCAAGAACCAGCACCCGTCACACATCATGTGCACACACCCCCTGACCCCCCCGAT
454 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-GCCCCCCGAT
* * **
18274644 CGCCAGAACCCCAATGCCGC---C-GG-TCA--G--G-TTCTCCGGCGATGGTGCCCCGGTGAAG
518 CGCC-GAACCCCAATGCCGCGGTCAGGTTCATCGATGATGCTCCGGTGATGGTGCCCCGACGAAG
** * * * **
18274699 AAAAATGCATCGCCAGCACATGCCCGAGCCCAGTATGTGCTGGCACAA-CC-C---TC-G---G-
582 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTTCGGTCCGA
18274754 --TT---C-----A-G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
647 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * *
18274803 CACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGGAAGTCGGGGATCGGCC
712 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCC
** * * * * * *
18274868 GGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCTGCAA-CCTTGGTCTGGTCCAATCTTGGA-TA
777 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCCGGTCTAATCTTAGACT-
* * * **
18274931 GGGAATGAACTCCGTATGCCTGAGCCAACTGACGGAACGAGCAAGCGGGCGG
841 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* * * * **
18274983 TCATTATGGCACCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
18275048 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
66 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * **
18275113 CTCAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
131 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
* *
18275178 CTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC-AGAAGGCA-TTTTGGCCCCAACCTTGGTAG
196 CTTTTTACGGTTCAGAATTTTTTAAAATTTTTTCGA-AAGG-AGTTTTGGCCCCAAACTTGGTAG
* * *
18275241 ACATGATCCTTGT-TTTTTCTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAGAA
259 ACGTGATCCTTGTATTTTT-GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
18275305 GATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAAC
323 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * * *
18275370 CTATAAAATCTCAAATGCTCTTTCAGGAGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGGGGC
388 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGC
* *
18275435 CAATATAAGGGCCAAGAACCAGCACCCATCACACATCATGTGCGCACACACCCCACGGCCCCCCT
453 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCC-CGGCCCCCC-
* * * * * * * * *
18275500 GATCTTCGGAACCCTAATGCCGCCGGTCAAGTTCTTCGGTGATGGTTCGGCGATGGTGCCCC-AG
515 GATC-GCCGAACCCCAATGCCG-CGGTCAGGTTCATCGATGATGCTCCGGTGATGGTGCCCCGA-
* * * *
18275564 CGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAACATGTGCTGTCGTAACCCTCGGTCCGG
577 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTTCGG
* * * *
18275629 TCTGATCTTAGATTGGGAAAGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
642 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
18275694 CAACCCAGGAAACGAGCGTACAGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGAT
707 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGAT
** * * * * *
18275759 CGATCGGGT--CCC-C--C-T-CTG-C-A---TGCTGCCATAATCCTCGATTCAGTAC-AATCTT
772 CGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCCGGT-CTAATCTT
* * * *
18275811 AGACTAGGAATTAACTCCGTATGCCTAAGCCAACTGACGAAATTAGCGGGCGGGCGGGCAGGTTG
836 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGAGCGGGCGGGC------
18275876 GGGG
891 --GG
* * * *
18275880 GCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCAATAAGGTGGTAGGTGGGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
18275945 GGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
66 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * **
18276010 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAA
131 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
* * * * **
18276075 CTTTTTACGGTTCGGGATTTTGTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAGTTCATAGAC
196 CTTTTTACGGTTCAGAATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * * * * *
18276140 TTGGTCATTGTATTTTTTTTTGGCATGCACAAAAATATTAAGCTAAAAACTTGAAGTGTACAAGA
261 GTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
18276205 TTTTGGGACCATTTGAAAAAAGTATCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
325 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
18276270 GTCAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
390 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCA
*
18276335 ATATAAGGGCCAAGTACCAGCACCCATGGCACATCATGTGCGCACACCCCCCCGGCCACCCCGAT
455 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC-CCCCGAT
* *
18276400 CGCCGAAACCCCAATGCCGTCGGTCATGTTC-TCCAGTGATGCTCCGGTGATGGTGCCCCGACGA
518 CGCCG-AACCCCAATGCCG-CGGTCAGGTTCATCGA-TGATGCTCCGGTGATGGTGCCCCGACGA
* *
18276464 AGAAAATTGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGTAACCCTCGG-TCTGGTC
580 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTTC-GGTC
* * * * *
18276528 CGATCTTACG-TTGGGAATGAACTCCATATGCTTAGACTAGGAATGCACTTCGTATGCCTAAGTC
644 CGATCTTA-GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * ** * * **
18276592 AACCCACAAAACAAGCGTGTGGGCGCTAAGCCGGCCAGAAAGACGAGATGCGCAACCCGGGGATC
708 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATC
** * * * * * *
18276657 GATCGGGTCCCCCTCTGCATGCTGCCGATCATGCTACCGTAATCCTCGATCCGGTCCAATCTTAG
773 GGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCCGGTCTAATCTTAG
* * *
18276722 ACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAGCGAACGGGCGGGCGAACGGGCGG
838 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-A---AACGAGC-GG-G--CGGGCGG
* **
18276785 GCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCAAGGATCGATAGGGTGGTAGGTGGGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
18276850 GGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
66 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * *
18276915 CTTAAGCCTTCACATGAAGTTTCACGGCAAGACGACTCGATTTCTATTTTTCATGATTTTTAAAA
131 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
* * * * * *
18276980 CTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTCGGCTCCAAACTTTGTAGAC
196 CTTTTTACGGTTCAGAATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
18277045 GTGATCTTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACCCAAAGTGTACAAGAT
261 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
18277110 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTG
326 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
18277175 TAAAATCTCAAATGCTCTTTAAAGTGGTGTGAGTTCTCAAGGTTTGATG-AGCGATAGGGGGCCA
391 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAG-GATAGGGGGCCA
* *
18277239 ATCTAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCGCC-ATC
455 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCGATC
* * * * *
18277303 ACCGGAACCCTAATGTCGCCGGTTAGGTTC-T---T--T--TTC---GATGGTGCCCCGACGAAG
519 GCC-GAACCCCAATGCCG-CGGTCAGGTTCATCGATGATGCTCCGGTGATGGTGCCCCGACGAAG
* * * *
18277357 AAAAATACAGCACTAGCACATGCCCGAAG-CCAGCATGTGCTGCCGTAACCCTC-GATCTGGTCC
582 AAAAATGCGGCACCAGCACATGCCCG-AGCCCAGCATGTGCTGCCGTAACCCTCGGTTC-GGTCC
* ** * *
18277420 GAGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTACGAATGAGCTCCGTATGCCTAAGTTAA
645 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
18277485 CCCACGAAACGAGCGTGCGGGCGCACAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGTGGATCG
710 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCG
18277549 ATAGGGTGGT
Statistics
Matches: 6799, Mismatches: 811, Indels: 432
0.85 0.10 0.05
Matches are distributed among these distances:
849 5 0.00
850 66 0.01
851 217 0.03
852 3 0.00
856 55 0.01
857 124 0.02
858 11 0.00
859 69 0.01
860 190 0.03
861 5 0.00
862 174 0.03
863 5 0.00
864 2 0.00
865 4 0.00
866 2 0.00
867 2 0.00
868 175 0.03
869 44 0.01
870 345 0.05
871 369 0.05
872 70 0.01
873 406 0.06
874 7 0.00
875 4 0.00
876 8 0.00
877 144 0.02
878 55 0.01
879 16 0.00
880 8 0.00
881 7 0.00
882 103 0.02
883 312 0.05
884 126 0.02
885 263 0.04
886 7 0.00
887 115 0.02
888 205 0.03
889 194 0.03
890 21 0.00
891 181 0.03
892 145 0.02
893 696 0.10
894 270 0.04
895 2 0.00
896 109 0.02
897 648 0.10
898 218 0.03
899 9 0.00
900 1 0.00
902 29 0.00
903 15 0.00
904 213 0.03
905 246 0.04
906 1 0.00
908 1 0.00
909 67 0.01
910 3 0.00
911 1 0.00
912 1 0.00
913 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
CTTTTTACGGTTCAGAATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGC
CGAACCCCAATGCCGCGGTCAGGTTCATCGATGATGCTCCGGTGATGGTGCCCCGACGAAGAAAA
ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTTCGGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGT
CCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCCGGTCTAATCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
Found at i:18271295 original size:26 final size:26
Alignment explanation
Indices: 18271256--18271308 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18271246 CTGGTCTGAT
*
18271256 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCATATG
*
18271282 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGCGAATGAACTCCATATG
18271308 C
1 C
18271309 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCATATG
Found at i:18272153 original size:26 final size:26
Alignment explanation
Indices: 18272124--18272176 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18272114 CCGATTCAAT
* *
18272124 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACGAGGAATGAACTCCATATG
*
18272150 CTTAGACGGGGAATGAACTCCATATG
1 CTTAGACGAGGAATGAACTCCATATG
18272176 C
1 C
18272177 CTATGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACGAGGAATGAACTCCATATG
Found at i:18273046 original size:26 final size:26
Alignment explanation
Indices: 18273017--18273069 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18273007 CCAGTCCGAT
*
18273017 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
18273043 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
18273069 C
1 C
18273070 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:18275664 original size:26 final size:26
Alignment explanation
Indices: 18275635--18275687 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18275625 CCGGTCTGAT
* *
18275635 CTTAGATTGGGAAAGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
18275661 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
18275687 C
1 C
18275688 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:18276778 original size:12 final size:12
Alignment explanation
Indices: 18276761--18276786 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
18276751 AACCGATGAA
18276761 GCGAACGGGCGG
1 GCGAACGGGCGG
18276773 GCGAACGGGCGG
1 GCGAACGGGCGG
18276785 GC
1 GC
18276787 ACTATGCCGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.27, G:0.58, T:0.00
Consensus pattern (12 bp):
GCGAACGGGCGG
Found at i:18277451 original size:26 final size:26
Alignment explanation
Indices: 18277422--18277475 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
18277412 TCTGGTCCGA
**
18277422 GCTTAGACTGGGAATGAACTCCGTAT
1 GCTTAGACTACGAATGAACTCCGTAT
*
18277448 GCTTAGACTACGAATGAGCTCCGTAT
1 GCTTAGACTACGAATGAACTCCGTAT
18277474 GC
1 GC
18277476 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (26 bp):
GCTTAGACTACGAATGAACTCCGTAT
Found at i:18279054 original size:26 final size:26
Alignment explanation
Indices: 18279025--18279103 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
18279015 CCGGTGCAAT
*
18279025 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18279051 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18279077 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18279103 C
1 C
18279104 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18279971 original size:26 final size:26
Alignment explanation
Indices: 18279942--18280020 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
18279932 CCGGTCCAAT
18279942 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18279968 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
18279994 ATTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18280020 C
1 C
18280021 CTAACTCAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18280901 original size:26 final size:26
Alignment explanation
Indices: 18280871--18280921 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18280861 GGTCTGATCC
* *
18280871 TAGACTGGGAATGAAGTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
18280897 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
18280922 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:18281389 original size:898 final size:898
Alignment explanation
Indices: 18277449--18283455 Score: 6946
Period size: 919 Copynumber: 6.7 Consensus size: 898
18277439 ACTCCGTATG
** * ** * *
18277449 CTTAGACTACGAATGAGCTCCGTATGCCTAAGTTAACCCACGAAACGA----GCGTGCGGGC--G
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * *
18277508 CAC-A-GCCGGCCAGAGGGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
18277571 GCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGCCTTGTAAATTCAGT-CAATGGTCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA-TACAATGGTCC
* *
18277635 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAA
195 CTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
** * * * * * *
18277700 CTTTTTTTGGTTCAGGATTTTTAAAAAATTTTTCGGTAGGAGTTTTGGACCCCAAACATGGCAGA
260 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCCCAAACTTGGTAGA
* * * *
18277765 TGTGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTCACCTAAAAAACTCGAAATGTACAAG
324 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAAG
* * * * *
18277830 ATTTTGTGACCATTTGAAAAAAGTATCCCCATTTTAGATACTTTAATAGCTACAGGCAGCAAACC
388 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
18277895 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
453 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
**
18277960 AATATAAGGGCCAAGTACCAGCACCCATCATACATCATGTGCGCACACCCCCCTGGCCCCCCCGA
518 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GG-CCCCCCGA
* * ** * *
18278025 TCGTCGGAACCCCAATACCGCCGGTCAGGTTCTTTGACGATGCCCCGACGATGGTGCCCCGGTGA
581 TCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGA
* * * * *
18278090 AGAAAAATACGACACCAGCACATGCCTGAGCCCAGCATGTGTTGTCGCAA-CC-C--T-C-G---
646 AGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT
18278146 G-TC-----C-------G-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
711 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * *
18278194 CCCACGAAATGAGCGTACGGGCGCTCAGCCAGCCAGAAGGGTGGGATGCGTAAGCCGGGGATCAA
776 CCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAATCCGGGGATCGA
* * * *
18278259 TCGGGTCCCTCTCTGCATGCTACCGATCCTGCTGCCACAACCCTCAGTCCGATCTGAT
841 TCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTGCCACAACCCTCAGTCCGGTCTGAT
* *
18278317 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGGGTGGGCGGGTGGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC--G-GG-
* * *
18278382 CGGGCACTACGTCGACCAGAGAGACGGGATGCACAAGCCGTGGATCGATTGGGTGGTAGGTGGGT
62 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
**
18278447 TTAGGCACATCTTCATATTTCTGCATGCCAATGATATTTTTATGGCTTGTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
18278512 TCCCTTAAGCCTTCACGTGAAGTTTCATGTCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
192 TCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * *
18278577 AAAGTTTTTGCGGCTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTA
257 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
18278642 AATGTGATCCTTGTATTTTTGTTGGCTTGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAA
322 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* **
18278707 GATTTTTGTGACCATTTGAAAAAGGTG-CCCCATTTCAGACACTTTAATGGCTACTACCAGCAAA
387 GA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * **
18278771 CCTGTAAAATTTCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGACATTTGATGAGGGATAGGGGG
451 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* ** * *
18278836 CCAATACAAGGGCCAAGTACCAGCACCTGTCGCACATCATGTGCGCACA--------CCCACTGA
516 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGA
* * * * * ** * *
18278893 TCGTCGGAACCTCAATGCCGTCGGTTAGGCTCTCCGGTGATGCTCCGACGATGGTGCGCCGACGA
581 TCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGA
* * *
18278958 A-AAAAATACGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGCCACAACCCTCGATCCGGTGC
646 AGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-C-G-G-
18279022 AATCTTAGACTGGTAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
703 --TC-----C-GG---T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
18279087 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTTAGCCGGCCAGAGG
750 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGG
* * ** **
18279152 GGCGGGATGCGCAAGT-CGGGGATCGATCAGGTCCCCCTCTGCGTGCTATCAATCCTATTGCTGC
815 GGCGGGATGCGCAA-TCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTGCCAC
*
18279216 AACCCTC-GATCTGGTCTGAT
879 AACCCTCAG-TCCGGTCTGAT
* ** * * * *
18279236 CTTAGACTGGTAATGAACTCCGTACACCTATGCTAAACGACGAAATGAGCAGGTGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----GGGCGGGCGGG
* * *
18279301 CGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCAATAGAGTGGTAGGTGGGT
62 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
18279366 TTAGGCATATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
** * * * *
18279431 TCCCTTAAGAGTTTATGCGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCACGATTTTTG
192 TCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
** *
18279496 AAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
257 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * * *
18279561 GACGTGGTCTTTGTATTTTTGTAGGCAGGCATAAAAAAATTCAGCTAAAAACTCGACGTGTACAA
322 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
18279626 GATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAC
387 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
18279691 CTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
452 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
18279756 CAATATAAGGGCCAAGTACCAGCACCCATCGCACGTCATGTAC-CAAACCCCCCGGCCCCCCTGA
517 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GA
* * * * *
18279820 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT----C--TG----G-CGATGGTGCACTGACGA
581 TCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGA
* *
18279874 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
646 AGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT
*
18279939 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAATTAGACTAG
711 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GG---GAA-T--G-------A-AC---
* * * * *
18280004 GAATGAACTTCGTATGCCTAACTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCTGAAG
758 ---T---C--CGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGG
* * ** * ****
18280069 GGTGGGATCCGCAAGT-CGGGGATCGA-CCTGTCCCTCTCTGCGTGCTGTTGATCCTGCTGCCAC
815 GGCGGGATGCGCAA-TCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTGCCAC
**
18280132 AACCCTC-GATCTAGTCTGAT
879 AACCCTCAG-TCCGGTCTGAT
* *
18280152 CTTAGACTGGGAATGAACTCCGTATGCCTATA-CCAACTGACGAAATGAGCGGGCAGGCGGACGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTA-AGCCAACCGACGAAACGAGCGGGC--G-GG-CGG
* ** *
18280216 GTGGGCACTACACCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
61 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
18280281 TTTAGGCACATCTTCATATTTGTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
126 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
18280346 GTCCCTTAAG-CTTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTAT
191 GTCCCTTAAGCCTTT-ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
** ** * * *
18280410 CAAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGG
255 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * * *
18280475 TAGACATGATCCTTGTATTTTTGTAGGCATGCATAAATAAATTCAGCTAAAAACTTGAAGTGTAC
320 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * * *
18280540 AAGATTTTATGACCATTTGAAAAAAATGTCCTCATTTCGGACACTTTAATGGCTACTGGCAGAAA
385 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * * *
18280605 ATCGGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGCTCTCAAGGTTTGATGAGGGATAGGGG
450 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
18280670 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCGCG
515 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCG
* * * * *
18280735 ATCGTCGGAACCCCAATGTCGCCTGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTG
580 ATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATG
* * * * *
18280800 AAGAAAAATGTGGCACCAACACATGCCCAAGCCCAGCATGTGCTGCTGCAACCCTTGGTCCGGTC
645 AAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * * *
18280865 TGATCCTAGACTGGGAATGAAGTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTATGTCA
710 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* ** * * *
18280930 ACCCACGAAACGAGCGTGCGGGCATTTAACCGGCCAGAGGGGCGGGATGCGCAATCCGAGGATCG
775 ACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAATCCGGGGATCG
* * * *
18280995 ATCGGGTCCCCCAT-TGCGTGCTACCAATCCTGCTACCGCAACCCTCAGTCCGGTCTAAA
840 ATCGGGTCCCCC-TCTGCGTGCTACCAATCCTGCTGCCACAACCCTCAGTCCGGTCTGAT
* * *
18281054 CTTAGACTGGGAATGAACTTCGTATACCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
*
18281119 CACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
18281184 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
18281249 TTAAGCCTTTACGTGAACTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGAAAC
196 TTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * * *
18281314 TTTTTATGATTTGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCTAAACTTGGTAGACG
261 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
18281379 TGACCCTTGTATTTTTATTGGCATGCAAAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
18281444 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
18281509 CAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG-TGAGGGATAGGGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
18281573 ATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCGCACACCCCCTGGCCCCCCGATCGTC
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTC
* * *
18281638 AAAACCCGAATGCCGCCTGTCAGGTTCTCCGACGATGCTCCGACGA---TG----G-T-AAGAAA
586 GAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAA
* * * * ** *
18281694 AATACGGCACTAGCACATGCCCGAGCCCTGAATGTGCTGCCATAA-AC-C--T-C-G---G----
651 AATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
* *
18281746 T---CT--G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCAAC
716 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * ** *
18281798 GAAACGAGCGTACAGGCGCTCAGCCGGCCAGAGGGGCAGGATGTGCAAACCGGGGATCGGCCAGG
781 GAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAATCCGGGGATCGATCGGG
** * * ** * * *
18281863 TCCCTTTCTGCATGCTACCAATCTTGCTGCTGCAACCCTCAGTTCAGTCCGAT
846 TCCCCCTCTGCGTGCTACCAATCCTGCTGCCACAACCCTCAGTCCGGTCTGAT
*
18281916 CTTAGA-TAGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGG
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGG
* * *
18281980 GCACTACG-CTGGCGAAAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTT
65 GCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
18282044 AGGCACATCTTTATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCTTACAATGGTC
129 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
18282109 CC-T-AG--TTT-C-----G-----TGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTTAA
194 CCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* **
18282159 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGGAAGGA-TTTTCGATCCCAAACTTGGTAG
259 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GGCCCCAAACTTGGTAG
18282223 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
323 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * * *
18282288 ATTTTG-GAACCATTTGAAAAAGGTG-CCCCATTTCAGACACTTTAATTGCTACTGCCAACAAAC
388 ATTTTGTG-ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
18282351 CTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGAC
452 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
18282416 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCGCACACCCCCACGGCCCCCCCG
517 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGG-CCCCCCG
* * * * *
18282481 ATCGCCAAAACCCCAATGTCGTCGGTCAGGTTCTCCAACGATGCTCCGACGATGGTGCCCCG-TC
580 ATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAT-
* * ** * * ** *
18282545 GAAGAAAAATATGGCACCAGCACATGCCCGAGCCCTGAATGTATTGCCGTAAGCCTCAATCTGGT
644 GAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* * * *
18282610 CCGATCTTAGACTGTGAATGAACTCGGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
709 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
18282675 AACCCACGAAACGAGCGTACAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCTGGGGATC
774 AACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAATCCGGGGATC
* * *
18282740 G-GCTGGGT--CCC-C--C-T-CTA-C-A---TGCTGCCACAACCCTAAGTTCGGTCTGAT
839 GATC-GGGTCCCCCTCTGCGTGCTACCAATCCTGCTGCCACAACCCTCAGTCCGGTCTGAT
* *
18282788 CTTAGACTGCGAATGAACTCC-TATGCCTAAGTCAACCGACGAAACGAGCGGGC-GGCGGGCGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC--G
** * * * * *
18282851 CAGGCACTACACCGACCAGAGAGACGAGATGCGAAAGCCGTGAATCGATAGGGTGGTAGGCGGGT
64 --GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * **
18282916 TTAGGCACATCTTTATATTTCTGCCTGCCAATGCCATTTTTATGATTTGTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * **
18282981 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTCTCACGATTTTCA
192 TCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
18283046 AAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCAAAACTTGGTA
257 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
18283111 AAAGTGATCCTTGTAATTTTGTTGGCATACACAAAAAAATTCAGCT-AAAACTCGAAGTGTACAA
322 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
** * **
18283175 GATTTTGTGACCATTTGAAAAAAAAGTCCCCATTTCAGACACTTTAATGGCTACCGATAGCAAAC
387 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
18283240 CTGTAAATTCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
452 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
18283305 CAATATAAGGGCCACGTACCAGTACCTATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
517 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCG
* * ** * *
18283370 ATCGCCGAAACCCCAATGCCGCCGGTCAAGTTCTCCGGTGATGCTCTGGCGATGGTG-CCCGATG
580 ATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATG
* *
18283434 AAAAAAAATTTGGCACCAGCAC
645 AAGAAAAATATGGCACCAGCAC
18283456 TATGTCGGCC
Statistics
Matches: 4438, Mismatches: 498, Indels: 386
0.83 0.09 0.07
Matches are distributed among these distances:
846 84 0.02
847 238 0.05
848 2 0.00
849 53 0.01
852 2 0.00
856 2 0.00
857 1 0.00
858 49 0.01
859 1 0.00
860 3 0.00
861 4 0.00
862 311 0.07
863 2 0.00
864 4 0.00
867 45 0.01
868 101 0.02
869 1 0.00
870 9 0.00
871 31 0.01
872 49 0.01
873 1 0.00
874 122 0.03
875 6 0.00
876 5 0.00
877 3 0.00
878 162 0.04
879 81 0.02
880 211 0.05
881 2 0.00
882 5 0.00
883 4 0.00
884 99 0.02
887 2 0.00
888 105 0.02
889 330 0.07
890 10 0.00
891 34 0.01
892 4 0.00
894 2 0.00
895 4 0.00
896 1 0.00
897 121 0.03
898 401 0.09
899 6 0.00
900 2 0.00
901 70 0.02
902 90 0.02
903 4 0.00
905 1 0.00
906 3 0.00
907 2 0.00
908 1 0.00
910 1 0.00
911 1 0.00
912 8 0.00
913 2 0.00
914 1 0.00
915 8 0.00
916 597 0.13
917 137 0.03
918 28 0.01
919 604 0.14
920 4 0.00
921 3 0.00
922 3 0.00
923 10 0.00
926 7 0.00
927 138 0.03
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTC
GAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAA
AATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAATCCGGGGATCGATCGGG
TCCCCCTCTGCGTGCTACCAATCCTGCTGCCACAACCCTCAGTCCGGTCTGAT
Found at i:18282654 original size:26 final size:26
Alignment explanation
Indices: 18282615--18282667 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18282605 CTGGTCCGAT
*
18282615 CTTAGACTGTGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCGGTATG
*
18282641 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCGGTATG
18282667 C
1 C
18282668 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCGGTATG
Found at i:18285034 original size:26 final size:26
Alignment explanation
Indices: 18284996--18285048 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18284986 CCAGTCCGAT
*
18284996 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
18285022 CTTAGACTTGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
18285048 C
1 C
18285049 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:18285362 original size:906 final size:893
Alignment explanation
Indices: 18283463--18285480 Score: 2971
Period size: 906 Copynumber: 2.2 Consensus size: 893
18283453 CACTATGTCG
* *
18283463 GCCAGAGAGACGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
18283528 ATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCGTTC
66 ATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
18283593 ACGTGAAGTTTCACGGCAAGACGACTCGGTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGT
* * * *
18283658 TCGAGATTTTTTTAAATTTTTTTGGAAGGAGTTTTGGCTCCAAACTTTGTAGACGTGATCCTTTT
196 TCGAGATTTTTTT-AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
18283723 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGCCAAAGTGTACAAGATTTTGTGACCAT
260 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGCCAAAGTGTACAAGATTTTGTGACCAT
* *
18283788 TTGAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
325 TTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAA
* * *
18283853 TGCTCTTTAATGTGGTGTGAGCTCTCAAGGTTTGATGAGGGATAGGGGGCCAATCTAAGGGCCAA
390 TGCTCTTTAAAGGGGTGTGAGCTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* *
18283918 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCGCCATCGCCGAAACCCCAA
455 GTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGACCCCCGCCATCGCCGAAACCCCAA
* * *
18283983 TGTCGCCAGTCCGGTTCTTCTGCGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCC
520 TGTCACCAGTCAGGTTCTTCTGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCC
* * * *
18284048 CGAGGCCAGCATGTGCTGCCGTAACCCTCGGTCTAGTCTGATCTTACACTGGGAATGAACTCCGT
585 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTACACTGGGAATGAACTCCGT
* *
18284113 ATGCTTTGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTC
650 ATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAAAGAGCGTGCGAGCGCTC
* * * *
18284178 AACCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCAAGTCCCCCTCTGTGTGCTACCAA
715 AACCAGCCAGAGGGGCGGGATGCACAAGCCGAGGATCAGCCAAGTCCCCCTCTGCGTGCTACCAA
* * *
18284243 TCCTACTACCGCAACCCTCAGTCTGGTCAGATCTTAGATTGGGAATGAACTCAGTATGCCTAAGC
780 TCCTACTACCACAACCCTCAGTCTGGTCAGATCTTAGACTAGGAATGAACTCAGTATGCCTAAGC
* * *
18284308 CAACTGACGAAACGAGCGGGCAGGCGGACGGGCTGGCGGGCACTACGCC
845 CAACCGACGAAACGAGCGGGCAGGCGGACAGGCGGGCGGGCACTACGCC
* *
18284357 GACCAGAGAGACGGGATGTGCAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCAAATCTT
1 G-CCAGAGAGACGGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
*
18284422 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAGAATGGTCCCTTAAGCCTT
65 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * *
18284487 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTGCAG
130 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGG
*
18284552 TTCGAGATTTTTTTAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCGTTGT
195 TTCGAGATTTTTTTAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
18284617 ATTTTTGTTGGCATGCACAAAAAAACTT-AGCTAAAAA-CTCGAAGTGTACAAGCTTTTGTGACC
260 ATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAAGC-CAAAGTGTACAAGATTTTGTGACC
18284680 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTC
323 ATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTC
* **
18284745 AAATGCTCTTTAAAGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
387 AAATGCTCTTTAAAGGGGTGTGAGCTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * * * **
18284810 CAAGTATCAGCACCCATCACACATCATGTGTGCACACCCCCCGACCCCCTCGATCGCTGGTACCC
452 CAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGACCCCCGCCATCGCCGAAACCC
* * *
18284875 CAATGTCACCGGTCAGGTTCTTCGGCGATGCTCCGGTGATGGTGCCCCGGCGAAGAAAAATGCGG
517 CAATGTCACCAGTCAGGTTCTT---C--TG---C---GATGGTGCCCCGACGAAGAAAAATGCAG
** * * *
18284940 CACCAGCACATGCTGGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCCAGTCCGATCTTAGACTG
571 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTACACTG
* * *
18285005 GGAATGAACTCGGTATGCTTAGACTTGGAATGAACT-CAGTATGCCTAAGTCAACCCACGAAACG
636 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCA-TATGCCTAAGTCAACCCACGAAAAG
* * * **
18285069 AGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCAGTCGGGTCCCCC
700 AGCGTGCGAGCGCTCAACCAGCCAGAGGGGCGGGATGCACAAGCCGAGGATCAGCCAAGTCCCCC
* * * * * * * **
18285134 TCTGCGTGCTATCGATCCTGCTGCCACAACTCTTAGTCTTGTCTTATCTTAGACTAGGAATGAAC
765 TCTGCGTGCTACCAATCCTACTACCACAACCCTCAGTCTGGTCAGATCTTAGACTAGGAATGAAC
** * * * * * *
18285199 TCTTTATGCCTATGCCAACCGACGAAACGAGTGGGCGGGCTGACAGGCGGGCGGGCAGTATGCC
830 TCAGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGACAGGCGGGCGGGCACTACGCC
* * *
18285263 AGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGTTGGTAGGTAGGTTTAGGCACATCTT
1 -GCCAGAGAGACGGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
18285328 AATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTT
65 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
18285393 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGG
130 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGG
*
18285458 TTCGAGATTTTTTAAAATTTTTT
195 TTCGAGATTTTTT-TAATTTTTT
18285481 ACGCACACCC
Statistics
Matches: 1002, Mismatches: 104, Indels: 23
0.89 0.09 0.02
Matches are distributed among these distances:
893 1 0.00
894 108 0.11
895 385 0.38
898 1 0.00
900 2 0.00
903 1 0.00
905 2 0.00
906 493 0.49
907 9 0.01
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (893 bp):
GCCAGAGAGACGGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGT
TCGAGATTTTTTTAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGCCAAAGTGTACAAGATTTTGTGACCATT
TGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAAT
GCTCTTTAAAGGGGTGTGAGCTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
TACCAGCACCCATCACACATCATGTGCGCACACCCCCCGACCCCCGCCATCGCCGAAACCCCAAT
GTCACCAGTCAGGTTCTTCTGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCC
GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTACACTGGGAATGAACTCCGTA
TGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAAAGAGCGTGCGAGCGCTCA
ACCAGCCAGAGGGGCGGGATGCACAAGCCGAGGATCAGCCAAGTCCCCCTCTGCGTGCTACCAAT
CCTACTACCACAACCCTCAGTCTGGTCAGATCTTAGACTAGGAATGAACTCAGTATGCCTAAGCC
AACCGACGAAACGAGCGGGCAGGCGGACAGGCGGGCGGGCACTACGCC
Found at i:18285591 original size:26 final size:26
Alignment explanation
Indices: 18285554--18285606 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18285544 CCATTCTGAT
18285554 CTTAGATGGGGAATGAAATCCGTATG
1 CTTAGATGGGGAATGAAATCCGTATG
*
18285580 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGA-TGGGGAATGAAATCCGTATG
18285606 C
1 C
18285607 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGATGGGGAATGAAATCCGTATG
Found at i:18286495 original size:26 final size:26
Alignment explanation
Indices: 18286459--18286509 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18286449 GATCCGATCC
*
18286459 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
18286485 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
18286510 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:18286847 original size:32 final size:32
Alignment explanation
Indices: 18286806--18286866 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
18286796 GTGCCAATGC
18286806 CATTTTTATGGCTTGTAAATTCATACAATTGT
1 CATTTTTATGGCTTGTAAATTCATACAATTGT
18286838 CATTTTTATGGCTTGTAAATTCATACAAT
1 CATTTTTATGGCTTGTAAATTCATACAAT
18286867 GGTCCCCTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.30, C:0.13, G:0.11, T:0.46
Consensus pattern (32 bp):
CATTTTTATGGCTTGTAAATTCATACAATTGT
Found at i:18288596 original size:25 final size:26
Alignment explanation
Indices: 18288540--18288590 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
18288530 TATTTTTCAT
* *
18288540 GATTTTTTAAACTTTTTACGGTACGG
1 GATTTTTTAAAATTTTTACGGTAAGG
*
18288566 GATTTTTTAAAATTTTTTCGG-AAGG
1 GATTTTTTAAAATTTTTACGGTAAGG
18288591 AGTTTTGGCC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 3 0.14
26 19 0.86
ACGTcount: A:0.25, C:0.08, G:0.20, T:0.47
Consensus pattern (26 bp):
GATTTTTTAAAATTTTTACGGTAAGG
Found at i:18289006 original size:26 final size:26
Alignment explanation
Indices: 18288977--18289029 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18288967 CCAGTCCGAT
18288977 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
18289003 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
18289029 C
1 C
18289030 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:18289489 original size:869 final size:874
Alignment explanation
Indices: 18287383--18289944 Score: 3071
Period size: 869 Copynumber: 2.9 Consensus size: 874
18287373 CCCGGTCTGG
* * * * * * * *
18287383 TCCAATCTTAGACT-AGGAATGAACTCTGTATGCCTAAGCCAACTGACAAAATGAGCGGGTGGGC
1 TCCAATCTTAGACTGA-GAATGAACTCCGCATGCATAAGCCAACCGACGAAACGA-C---CGGAC
*** * * * *
18287447 GGGCGGGCGGGCACTACGCCTACCAGAGAGACGGGATGCGTAAG-CTGTGGATCGATAGGGTGGT
61 GGGCGGGCGGGCACTACGCAGGCCAGACAGACGGGAAGCGCAAGTC-GTAGATCGATAGGGTGGT
* **
18287511 AGGTGGGTTTAGGTACATCTTCGCATTTCTGTG--TGCCAATGCCATTTTTATGGCTTGTAAATT
125 AGGTGGGTTTAGGCACATCTTCATATTT-TG-GCATGCCAATGCCATTTTTATGGCTTGTAAATT
**
18287574 CATACAATGGTAACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
188 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-ACTCGTTTTCTATTTTTC
** * ** * * * * ** *
18287639 ACAATTTTTGAAACTTTTTGCTATTCGGGATTTTTTCAAATTTTTTTGGAAGG-GGTTTGGCCCC
252 ATGATTTTTGAAACTTTTTACGGTACGAGATTTTTTAAAATTCTTTCAGAAGGAGTTTTGGCCCC
* * * *
18287703 AACCTTGGTAGACGTAATCCTTGTATTTTTGTTGGCATGCATAAAAAATTTCAGCTAAAAACTCG
317 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT---AA--C-
* *
18287768 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACT
376 AA-AG-AC---A-----TG--C---TG---AAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* **
18287833 GGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGACGGTGTGAGTTCTCGAGGTTTGATGAGG
423 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * * *
18287898 GATAGGGGGCTAATATAAGCA-CCAAGTATCAGCAACCATCGCACATCATGTGCGCACACCCCCC
488 GATAGGGGGCCAATATAAG-AGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACA-CCCCC
* * * * * * * * * * *
18287962 CCAGTCTCCCTGATTGCCGGAACCCTAATGCCGCCGGTTAGGTTCTTTGGCGATGCTCCGGTGAT
551 CCAGACCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTTCGACGATGCTCCGGCGAT
* ** * * * * *
18288027 GCTGCCCCGACGAAGAAAAATGTTGCACCAGCACATGCCCGAGCCTAGCATGTACTGTCACAACC
616 GGTGCCCCGGTGAAGAAAAATG-CGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* ** * * *
18288092 CTCGGTCC-GATCTGATCTTAGACTGGGAATTAACTTTGTTTGCTTAGACTGGGAATAAACTCCG
680 CTCGGTCCAG-TCCGATCTTAGACTGGGAAAGAACTTCGTATGCTTAGACTGGGAATGAACTCCG
* * * *
18288156 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCAC
744 TATGCCTAAGTCAACCCACGAAACGACCGTACGGGCGCTCAGCCGGCCAGAAGGGCAGGATGCAC
* ** * *
18288221 AAGCCGAGGATCGACCGGGTGCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCG
809 AAGCCGAGGATCGACCGGGTCCCCCAATACGTGCTGCCAATCCTGCTGCCGCAACCCTCGATCCG
18288286 A
874 A
* * * * * *
18288287 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGATGGGCG
1 TCCAATCTTAGACTGAGAATGAACTCCGCATGCATAAGCCAACCGACGAAACGACCGGACGGGCG
* * *
18288352 GGCGGGCACTATGCAGGCCAGAGAGACGGGAAGTGCAAGTCGTAGATCGATAGGGTGGTAGGTGG
66 GGCGGGCACTACGCAGGCCAGACAGACGGGAAGCGCAAGTCGTAGATCGATAGGGTGGTAGGTGG
* * *
18288417 GTTTAGGCACATCTTCATATTTTGGCGTGCCAATTCCATTTTTATGGCTTGTAAATTCCTACAAT
131 GTTTAGGCACATCTTCATATTTTGGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
18288482 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACACTCGTTTTTTATTTTTCATGATTTTT
196 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACACTCGTTTTCTATTTTTCATGATTTTT
* * * *
18288547 TAAACTTTTTACGGTACGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
261 GAAACTTTTTACGGTACGAGATTTTTTAAAATTCTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
*
18288612 AGACGTGATCGTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-A-AAA-AC-T-C-G-AA
326 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAACAAAGACATGCTGAAA
*
18288670 GTGTCCCCATTTCAGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
391 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * * * *
18288735 AAGGGGGTGTGAGTTCACGAGGTTTGATAAGGGACAGGGGGCCAACATAAGAGCCAAGTACCAAC
456 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGC
* *
18288800 ACCCATTGCACATCATGTGCGCACACCCCCCCAGGCCCCCCCGATCGTCGGAACCCCAATGTCGC
521 ACCCATTGCACATCATGTGCGCACACCCCCCCA-GACCCCCCGATCGTCGGAACCCCAATGCCGC
* *
18288865 CGATCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCTGGTGAAGAAAAATGCGACACCAGCAC
585 CGATCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCG-CACCAGCAC
* *
18288930 ATGCCCGAGCCCAGTATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAAAGAAC
649 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAAAGAAC
* *
18288995 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGACCGTACGGG
714 TTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTACGGG
* * * *
18289060 CGCTCAGTCGGCCAGAAGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCAATACGTGCT
779 CGCTCAGCCGGCCAGAAGGGCAGGATGCACAAGCCGAGGATCGACCGGGTCCCCCAATACGTGCT
* *
18289125 GCCAATCCTGCTGCCTCAACCCTCGATCCGG
844 GCCAATCCTGCTGCCGCAACCCTCGATCCGA
* * * *
18289156 TCTAATCTTAGACTTAGAATGAACTCCGCATGCATAAGCCAACTGACGGAACGACC-GAGCGGGC
1 TCCAATCTTAGACTGAGAATGAACTCCGCATGCATAAGCCAACCGACGAAACGACCGGA-CGGGC
* * *
18289220 GGGCGGGCACTACGCCGGCCAGACAGACGGGATGCGCAAG-CTGTGGATCGATAGGGTGGTAGGT
65 GGGCGGGCACTACGCAGGCCAGACAGACGGGAAGCGCAAGTC-GTAGATCGATAGGGTGGTAGGT
*
18289284 GGGTTTAGGCACATCTTTATATTTCT-GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
129 GGGTTTAGGCACATCTTCATATTT-TGGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
18289348 AATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
193 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-ACTCGTTTTCTATTTTTCATGAT
*
18289413 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTCTTTCAGAAGGAGTTTTGG-CCCAAACT
257 TTTTGAAACTTTTTACGGTACGAGATTTTTTAAAATTCTTTCAGAAGGAGTTTTGGCCCCAAACT
* *
18289477 TGGTATACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
322 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT---AA--CAAA--G
*
18289542 TACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTACTGGCAG
380 -AC---A---T--G--C---TG---AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
18289607 CAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGGGAGTTCTCGAGGTTTGATGAGGGATA-
428 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
18289671 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCACACA-GCCCCC-GACC
493 GGGGCCAATATAAGAGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCAGACC
* * *
18289734 CCCCGATCGTCGGAACCCCAATGCCGTC-AGTCAGGTTCTTCGACGATGCTCTGACGATGGTGCC
558 CCCCGATCGTCGGAACCCCAATGCCGCCGA-TCAGGTTCTTCGACGATGCTCCGGCGATGGTGCC
* * *
18289798 CCGGTGAAGAAAAATGCGGTACCAGCACATGCCCGAGCTCAGCATATGCTGCCGCAACCCTCGGT
622 CCGGTGAAGAAAAATGC-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
*
18289863 CCAGTCCGATCTTAGACTGGGAAAGAACTTCGTATGCTTAGACTGTGAATGAACTCCGTATGCCT
686 CCAGTCCGATCTTAGACTGGGAAAGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
18289928 AAGTCAACCCACGAAAC
751 AAGTCAACCCACGAAAC
18289945 TTGGTAAAAG
Statistics
Matches: 1452, Mismatches: 160, Indels: 100
0.85 0.09 0.06
Matches are distributed among these distances:
868 13 0.01
869 673 0.46
870 75 0.05
873 2 0.00
876 3 0.00
877 1 0.00
880 3 0.00
887 1 0.00
889 2 0.00
892 3 0.00
895 1 0.00
896 198 0.14
897 1 0.00
898 6 0.00
899 112 0.08
900 310 0.21
901 1 0.00
904 47 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (874 bp):
TCCAATCTTAGACTGAGAATGAACTCCGCATGCATAAGCCAACCGACGAAACGACCGGACGGGCG
GGCGGGCACTACGCAGGCCAGACAGACGGGAAGCGCAAGTCGTAGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTTGGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACACTCGTTTTCTATTTTTCATGATTTTT
GAAACTTTTTACGGTACGAGATTTTTTAAAATTCTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAACAAAGACATGCTGAAA
GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGC
ACCCATTGCACATCATGTGCGCACACCCCCCCAGACCCCCCGATCGTCGGAACCCCAATGCCGCC
GATCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGCACCAGCACAT
GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAAAGAACTT
CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTACGGGCG
CTCAGCCGGCCAGAAGGGCAGGATGCACAAGCCGAGGATCGACCGGGTCCCCCAATACGTGCTGC
CAATCCTGCTGCCGCAACCCTCGATCCGA
Found at i:18289916 original size:26 final size:26
Alignment explanation
Indices: 18289873--18289925 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18289863 CCAGTCCGAT
*
18289873 CTTAGACTGGGAAAGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
18289899 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
18289925 C
1 C
18289926 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:18292850 original size:26 final size:26
Alignment explanation
Indices: 18292821--18292873 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18292811 CCGGTTCGAT
18292821 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
18292847 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
18292873 C
1 C
18292874 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:18293065 original size:899 final size:893
Alignment explanation
Indices: 18291260--18293788 Score: 3613
Period size: 899 Copynumber: 2.8 Consensus size: 893
18291250 CGAGCGGGTG
* * * *
18291260 GGCGGGCAGGCGGGCACTACGCCGACCAGAAAACGGGATGCGTAAGCCGTGGATCGATAGGGTGG
1 GGCGGGCGGGCGGGCACTACGCCGGCCAGAAGACGGGATGCGCAAG-CGTGGATCGATAGGGTGG
* *
18291325 TAGGTGGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTC
65 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* **
18291390 ATAGAATGGTAACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
130 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
** * * * * *
18291455 CAATTTTTGAAACTTTTTGCTGTTCGGGATTTTTTCAAAA-TTTTTAGGAAGGGGTTTGGCCCCA
195 TGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTTTCGGAAGAGTTTTGGCCCCA
* *
18291519 ACCTTGGTAGACGTAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
259 AACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
18291584 AGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTG
323 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* ** *
18291649 GCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGACGGTGTGAGTTCTCGAGGCTTGATGAGGG
388 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * *
18291714 ACAGGGGGCTAATATAAGCA-CCAAGTATCAGCAACCATCGCACATCATGTGCGCACACCCCCCC
453 ACAGGGGGCCAATATAAG-AGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACA-CCCCCC
* * * * * * *
18291778 AGTCCCCCCGATTGCCGGAACCCTAATGCCGCCGGTTAGGTTCTCTGGCGATGCTCCGGCGATGG
516 AGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GCGATGG
* * * *
18291843 TGCCCCGGCGAAGAAAAATGTTGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCT
580 TGCCCTGGTGAAGAAAAATG-TGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* ** * * *
18291908 CGATCCGATCCGATCTTAGACTGGGAATTAACTTTGTTTGCTTAGACTGGGAATAAACTCCGTAT
644 CGATCCGGTCCGATCTTAGACTGGGAAAGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * *
18291973 GCCTAAGTCAACCCACGAAA-TGAGCGTGCAGGCGCTCAGCCGGCCAGAGAGGCGGGATGCACAA
709 GCCTAAGTCAACCCACGAAACTGACCGTACAGGCGCTCAGCCGACCAGAGAGGCGGGATGCACAA
* ** * * * *
18292037 GCCGAGGATCGACCGGGTGCCCCTCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGATCTGAT
774 GCCGAGGATCGACCGGGTCCCCCAATACGTGCTGCCAATCCTACTACCGCAACCCTCGATCCGAT
* * ** * *
18292102 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACAAGC
839 CCAATCTTAGACTGAGAATGAACTCCACATGCATAAGCCAACTGACGAAACAACC
* * * *
18292157 GGACGGGCGGGCGGGCACTACGCAGGCCAGAGAGACGGGAAGTGCAAGTCGTAGATCGATAGGGT
1 GG-CGGGCGGGCGGGCACTACGCCGGCCAGA-AGACGGGATGCGCAAG-CGTGGATCGATAGGGT
* * *
18292222 GGTAGGTGGGTTTAGGCACATCTTCATAGTTT-GGCGTACCAATTCCATTTTTATGGCTTGTAAA
63 GGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
* *
18292286 TTCCTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-ACTCGTTTTTTATTTT
127 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* *
18292350 TCATGATTTTTGAAACTTTTTACGGTACGGGATTTTTTAAAATTTTTTCGAAAGAAGTTTTGGCC
192 TCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG-AGTTTTGGCC
* *
18292415 CCAAACTTGGTAGACGTGATCATTGTATTTCTGTTGGCATGCAGAAAAAAATTCAGCTAAAAACT
256 CCAAACTTGGTAGACGTGATCCTTGTATTT-TGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
18292480 TGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGCCTA
320 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
18292545 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCACGAGGTTTGATAA
385 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
18292610 GGGACAGGGGGCCAACATAAGAGCCAAGTACCAACACCCATTGCACATCATGTGCGCACACCCCC
450 GGGACAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCC
* * * * *
18292675 CAAGCCCCCCCGATCGTCAGAACCCCAATGTCGCCGATCAGATTCTCCGACGATGCTCCAGCGAT
515 C-AGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GCGAT
* *
18292740 GGTGCCCTGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGTATGTGCTGCCGCAACC
578 GGTGCCCTGGTGAAGAAAAATGTG-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * *
18292805 CTTGATCCGGTTCGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
642 CTCGATCCGGTCCGATCTTAGACTGGGAAAGAACTTCGTATGCTTAGACTGGGAATGAACTCCGT
* * * *
18292870 ATGCCTAAGTCAACCCATGAAACT-ACCGTACGGGCGCTCAGTCGACCAGA-AGGGCGGGATGCG
707 ATGCCTAAGTCAACCCACGAAACTGACCGTACAGGCGCTCAGCCGACCAGAGA-GGCGGGATGCA
* * * *
18292933 CAAGCCGGGGATCGGCCGGGTCCCCCAATACGTGCTGCCAATCCTACTGCCTCAACCCTCGATCC
771 CAAGCCGAGGATCGACCGGGTCCCCCAATACGTGCTGCCAATCCTACTACCGCAACCCTCGATCC
* * * * *
18292998 GGTCTAATCTTAGACTTAGAATGAACTCCACATGCATAAGCCAACTGACGGAACGACC
836 GATCCAATCTTAGACTGAGAATGAACTCCACATGCATAAGCCAACTGACGAAACAACC
18293056 GAGCGGGCGGGCGGGCACTACGCCGGCCAGACAGACGGGATGCGCAAGCTGTGGATCGATAGGGT
1 G-GCGGGCGGGCGGGCACTACGCCGGCCAGA-AGACGGGATGCGCAAGC-GTGGATCGATAGGGT
* *
18293121 GGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
63 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
*
18293186 TCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
128 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* *
18293251 CATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTCTTTCGGAAGGAGTTTTGG-CC
193 CATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA-GAGTTTTGGCCC
* * *
18293315 CAAACTTGGTATACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCA
257 CAAACTTGGTAGACGTGATCCTTGTATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * *
18293380 AAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCACTTGAGACACTTTAATGGCTACT
322 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
18293445 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGGGAGTTCTCGAGGTTTGATGAGG
387 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
18293510 GATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCC-
452 GACAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCA
* *
18293573 GACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGACGATGGT
517 GACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG-CGATGGT
* * * *
18293638 G-CCTCGGTGAAGAAAAATGTGGTACCAGCACATGCTCGAGCTCAGCATATGCTGCCGCAACCCT
581 GCCCT-GGTGAAGAAAAATGT-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * *
18293702 CGGTCCGGTCCGATCTTAGACTGGGAAAGAACTTCGTATGCTTAGACTGTGAATGGACTCTGTAT
644 CGATCCGGTCCGATCTTAGACTGGGAAAGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTAT
18293767 GCCTAAGTCAACCCACGAAACT
709 GCCTAAGTCAACCCACGAAACT
18293789 TGGTAAAAGT
Statistics
Matches: 1453, Mismatches: 160, Indels: 40
0.88 0.10 0.02
Matches are distributed among these distances:
894 4 0.00
895 187 0.13
896 1 0.00
897 62 0.04
898 255 0.18
899 866 0.60
900 77 0.05
901 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GGCGGGCGGGCGGGCACTACGCCGGCCAGAAGACGGGATGCGCAAGCGTGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGAGTTTTGGCCCCAAA
CTTGGTAGACGTGATCCTTGTATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGACA
GGGGGCCAATATAAGAGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCAGACC
CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCT
GGTGAAGAAAAATGTGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCG
GTCCGATCTTAGACTGGGAAAGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCCACGAAACTGACCGTACAGGCGCTCAGCCGACCAGAGAGGCGGGATGCACAAGCCGAGG
ATCGACCGGGTCCCCCAATACGTGCTGCCAATCCTACTACCGCAACCCTCGATCCGATCCAATCT
TAGACTGAGAATGAACTCCACATGCATAAGCCAACTGACGAAACAACC
Found at i:18295715 original size:718 final size:713
Alignment explanation
Indices: 18294307--18295784 Score: 2208
Period size: 718 Copynumber: 2.1 Consensus size: 713
18294297 ACCGATCCTG
* * * * *
18294307 CTGCCGCAGCCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACC
1 CTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACC
* ** *
18294372 GACGAAACGAGCGGGTGGACGGGCGGGAACTACGTCGGCCAGAGAGATGGGATGCGTAAGCCATG
66 GACGAAACGAGCGGGTGGACGGGCGGGAACTACGCCGGCCAGAGAGACAGGATGCGTAAGCCATA
*
18294437 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATACCATTTTTA
131 GATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATACCATTTTTA
* **
18294502 TAGCTTGTAAATTCATACAGTGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
196 TAGCTTGTAAATTCATACAATGGTAACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * *
18294567 TTTTATATTTTTCATAATTTTCGAAACATTTTGCAGTTTTGGATTTTTTAAATTTTTTTTGCAAC
261 TTTTATATTTTTCACAATTTTCGAAACATTTTGCAG-TTCGGATTTTTTAAATTTTTTTCGCAAC
* * * *
18294632 GTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
325 GGGGTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
18294697 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
390 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
**
18294762 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
455 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGACGGTGTGAGTTCTCG
* * ** * *
18294827 AGGTTTAATGAGGGATTGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
520 AGGTTTAATGAGGGATAGGGGGCCAATATAAGCACCAAGTACCAGCAACCATCGAACATCATGTG
*
18294892 CGCACATCCCCCCGACCCCCAGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGATGATA
585 CGCACATCCCCCCGACCCCCAGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATA
* * * *
18294957 CTCTGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGGCCAGCATGTG
650 CTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTA
* * * *
18295021 CTGCCATAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTATGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACC
* *
18295086 GACGAAACGAGCGGGTGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACAGGATGCGTAAGC
66 GACGAAACGAGCGGGTGGACGGGC----GGGAACTACGCCGGCCAGAGAGACAGGATGCGTAAGC
* * *
18295151 CGTAGATCGATAGGGTGGTAGGCGGGTTTAGGTACATCTTCATATTTCTATGTGCCAATGCCATT
127 CATAGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATACCATT
*
18295216 TTTATGGCTTGTAAATTCATACAATGGTAACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
192 TTTATAGCTTGTAAATTCATACAATGGTAACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** *
18295281 CTCGTTTTCTATTTTTCACAATTTTTTAAACTTTTTGCTA-TTCGAGATTTTTTCAAA-TTTTTT
257 CTCGTTTTATATTTTTCACAATTTTCGAAACATTTTGC-AGTTCG-GATTTTTT-AAATTTTTTT
* *
18295344 CGGAA-GGGGTTTGGCCCCAACCTTGGTAGACGTAATCCTTGTATTTTTGTTGGCATGCACAAAA
319 CGCAACGGGGTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTGTTGGCATGCACAAAA
*
18295408 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTC
384 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
18295473 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGACGGTGTGAG
449 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGACGGTGTGAG
* * *
18295538 TTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGCACCAAGTATCAGCAACCATCGAACAT
514 TTCTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGCACCAAGTACCAGCAACCATCGAACAT
* * * * *
18295603 CATGTGCGCACATCCCCCCAGTCCCCCCGATTGCCGGAACCCTAATGCCGCCGGTTAGGTTC-TC
579 CATGTGCGCACATCCCCCC-GACCCCCAGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTC
* * * * ***
18295667 TGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGTTGCACCAGCACATGCCCGAGCCCA
643 -GACGATACTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
18295732 GCATGTA
707 GCATGTA
* * * *
18295739 CTGTCACAACCCTCGGTCCGATTCGATCTTAGACTGGGAATTAACT
1 CTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
18295785 TTGTTTGCTT
Statistics
Matches: 682, Mismatches: 73, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
714 79 0.12
717 260 0.38
718 339 0.50
719 4 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (713 bp):
CTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACC
GACGAAACGAGCGGGTGGACGGGCGGGAACTACGCCGGCCAGAGAGACAGGATGCGTAAGCCATA
GATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATACCATTTTTA
TAGCTTGTAAATTCATACAATGGTAACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTATATTTTTCACAATTTTCGAAACATTTTGCAGTTCGGATTTTTTAAATTTTTTTCGCAACG
GGGTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGACGGTGTGAGTTCTCGA
GGTTTAATGAGGGATAGGGGGCCAATATAAGCACCAAGTACCAGCAACCATCGAACATCATGTGC
GCACATCCCCCCGACCCCCAGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATAC
TCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTA
Found at i:18296694 original size:26 final size:26
Alignment explanation
Indices: 18296665--18296717 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18296655 CCGGTCCGAT
*
18296665 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18296691 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18296717 C
1 C
18296718 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18296853 original size:899 final size:897
Alignment explanation
Indices: 18295019--18301379 Score: 8160
Period size: 895 Copynumber: 7.1 Consensus size: 897
18295009 GGCCAGCATG
* * * * **
18295019 TGCTGCCATAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTATGTATGCCTAAGCCAA
1 TGCTACCATAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18295084 CCGACGAAACGAGCGGGTGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACAGGATGCGTAA
66 CCGACGAAACGAGC-----GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * **
18295149 GCCGTAGATCGATAGGGTGGTAGGCGGGTTTAGGTACATCTTCATATTTCTATGTGCCAATGCCA
126 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
**
18295214 TTTTTATGGCTTGTAAATTCATACAATGGTAACTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
191 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** * * ** *
18295279 GACTCGTTTTCTATTTTTCACAATTTTTTAAACTTTTTGCTATTCGAGATTTTTTCAAATTTTTT
256 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * *
18295344 CGGAAGG-GGTTTGGCCCCAACCTTGGTAGACGTAATCCTTGTATTTTTGTTGGCATGCACAAAA
321 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
18295408 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTC
386 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* **
18295473 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGACGGTGTGAG
451 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* ** * * *
18295538 TTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGCACCAAGTATCAGCAACCATCGAACAT
516 TTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
18295603 CATGTGCGCACATCCCCCCA-GTCCCCCCGATTGCCGGAACCCTAATGCCGCCGGTTAGGTTCTC
580 CATGTGCGCACACCCCCCCAGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* ***
18295667 TGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGTTGCACCAGCACATGCCCGAGCCCA
645 CGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
* * * * * * * ** *
18295732 GCATGTACTGTCACAACCCTCGGTCCGATTCGATCTTAGACTGGGAATTAACTTTGTTTGCTTAG
710 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* *
18295797 ACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCC
775 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * *
18295862 AGAGGGGCGGGATGCACAAGCCGAGGATCGACCGGGTGCCCCTCTGCGTGCTGTCGATCC
840 AGAGGGGCGGGATGCACAAGCCGGGGATCG-TCGGGT-CCCCTCTGCGTGCTGCCGATCC
* * * *
18295922 TGCTGCCGTAACCCTCGATCCT-ATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTACCATAACCCTCGAT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * * *
18295986 ACTAACGAAACGAGCGGACGGGCGGGCGGGCACTACGCAGGCCAGAGAGACGGGAAGTGCAAGTC
65 ACCGACGAAACGAGCGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
18296051 GTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TGGCGTGCCAATTCCATT
129 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCGTGCCAATGCCATT
* * *
18296115 TTAATGGCTTGTAAATTCCTACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC-A
193 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
18296179 CTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTACGGGATTTTTTAAAATTTTTTCG
258 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
* *
18296244 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCATTGTATTTTTGTTGGCATGCACAAAAAA
323 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
18296309 ATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAA
388 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
18296374 ACACTTTAATGCCTACTGGCTGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
453 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * * * *
18296439 CACGAGGTTTGATAAGGGACAGGGGCCAACATAAGAGCCAAGTACCACCACCCATTGCACATCAT
518 CTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
18296504 GTGCGCACACCCCCCCAGGCCCCCCCGATCGTCGGAACCCTAATGTCGCCGATCAGGTTCTCCGG
583 GTGCGCACACCCCCCCAGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * *
18296569 CGATGCTCCGGCGATGGTGCCCTGGTGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCA
648 CGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
* *
18296634 TGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
713 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * *
18296699 GGGAATAAACTCCGTATGCCTATGTCAACCCACGAAATGAGCGTGCGGGCGCTTAGCCGACCAGA
778 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * * *
18296764 GGGGCGAGATGCACAAGCCGGGGATCAGCCGGGTGCCCCTCTACATGTTGCCGATCT
843 GGGGCGGGATGCACAAGCCGGGGATC-GTCGGGT-CCCCTCTGCGTGCTGCCGATCC
*
18296821 TGCTACCATAACCCTCGATTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCATAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18296886 CCGACGAAACGA---GTGGGCGGGCAGGCACTACGCCGGCAAGAGAGACAGGATGCGCAAGCCGT
66 CCGACGAAACGAGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
18296948 GGATCGATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTTCATGCCAATGCCATTTTT
131 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
* * *
18297013 ATGGCTTGTAAATTCATACAACGGTCCTTTTAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
196 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
18297078 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCTGTTCGAGATTTTTTAAAATTTTTTCAGAA
261 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* * *
18297143 GGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATT
326 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
18297208 CAGTTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTTAGACA
391 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
18297273 CTTTAATGGCTATTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTACGGGGGTGTGAGTTCTT
456 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
18297338 GAGGTGTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA--T
521 GAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * ** *
18297401 GAGCACACACCCCCAAGCCCTCCTGATCGCCGGAACCCCAATGCCATCGGTCAGGTTGTCCGGCG
585 GCGCACACCCCCCCAGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
** * *
18297466 ATGCTCTAGCGATGGTG-CCCGGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCAT
650 ATGCTCCGGCGATGGTGCCCCGG-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* * *
18297530 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATTAACTCTGTTTGCTTAGACTG
714 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * *
18297595 GGAATTAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGAGCTCAGCCGGCCAGAG
779 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * **
18297660 GGGCGGGATGCACAAGCCGGGGATCGACCGGGTGCCCTTCTACGTGCTGTTGATCC
844 GGGCGGGATGCACAAGCCGGGGATCG-TCGGGT-CCCCTCTGCGTGCTGCCGATCC
* * * *
18297716 TGCTACCACAACCCTC-AGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTACCATAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
18297780 ACCGACGAAACAAGTCGGCGGGCGGGTGGGCACTACGCGGGCCAGAGAGACGGGAAT-CGTAAGC
65 ACCGACGAAACGAG-CGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG-ATGCGCAAGC
* *
18297844 CGTAGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTT-TG-GCTGCCAATGCCAT
128 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG-TGCCAATGCCAT
18297907 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-
192 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
18297971 ACCCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTTGGGATTTTTT-TAATTTTTTC
257 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * *
18298035 GGAAGGATTTTTGGCCCCAAACTTAGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
322 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
18298100 AATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
387 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * * *
18298165 GACACTTTACTGGCCACTGGCTGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACT
452 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
18298230 TCTCGAGGTTTGGTGAGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
517 TCTCGAGGTTTGATGAGGGATAG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * *
18298295 ATGTGCGCAGA--CCCCCTGG-CCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTTTTC
581 ATGTGCGCACACCCCCCCAGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *** * * *
18298357 GGCGATCCTCCGACGATGGT-CCCCAGCGAAGAAAAATGTTGCACGAGGACATGCCCGGGCCCAG
646 GGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
** * * * *
18298421 CATGTGCTGTTGCTACCCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
711 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
18298486 CTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCA
776 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * *
18298551 GAGGGGCGGGATGCACAAGTCGGGGATTAGTCGGGTCCCACACTGCGTACTGTCGATCG
841 GAGGGGCGGGATGCACAAGCCGGGGA-TCGTCGGGTCCC-CTCTGCGTGCTGCCGATCC
* ** * * *
18298610 TGCTACCGTAACTTTCGGTTTGGT-TCGATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTACCATAACCCTCGATCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
18298674 ACCGACAAAATGAGCGGGTGGGCGGGCGGGCACTACACCGGCCAGAGAGATGGGATGCGCAAGCC
65 ACCGACGAAACGAGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
18298739 GTGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCTGTGTGCCAATGCAATTT
129 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
*
18298804 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC-CTGTGAAGTTTCGTGGCAAGACGA
194 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC-GTGAAGTTTCATGGCAAGACGA
* *
18298868 CTCATTTTCTATTTTTTC-TGATATTTGAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTT
258 CTCGTTTTCTA-TTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTT
* * * *
18298931 CGGAAGGAGTTTTGGCCCCAAACATAGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
321 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
18298996 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTC
386 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * * * *
18299061 AGACACTTCAATGGCTACTGGCAGCAAACTTGTAAAATGTCGAATGGTCTTTAAGGCGGTGTGAG
451 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
18299126 TTCT-GAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
516 TTCTCGAGGTTTGATGAGGGAT-AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
18299190 CATGTGCGCACAACCCCTCCTGGCCGCCCCCGATTG-CGGAACGCCCATTGCCGCCGGTCAGG-T
580 CATGTGCGCAC-ACCCCCCCAGGCC-CCCCCGATCGCCGGAAC-CCCAATGCCGCCGGTCAGGTT
* * ** **
18299253 CTACGACGATGCTTCTCCACGATGGTGCCATCCGATGAAAGAAAAAT-CTGGCACCAGCAC-TAG
642 CTCCGGCGATGC-TC-CGGCGATGGTGCC--CCGGCG-AAGAAAAATAC-GGCACCAGCACAT-G
* * ** * *
18299316 GCTGAGCCCAGCATGTG-TGCCGCAACGCCT-TATGTAGTCCGATCTTAGACTGGG-A-G-ACTA
700 CCCGAGCCCAGCATGTGCTGCCGCAAC-CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT-
* * * *
18299376 CCGTATGCTTAGACTAGGAATGAACTCC-CATACGCTAAGTCAA-CCACAAAACGAGCGTGCGGT
763 CCGTATGCTTAGACTGGGAATGAACTCCGTATGC-CTAAGTCAACCCACGAAACGAGCGTGCGG-
* * *
18299439 GCGCTCAGCC-GCCAGA-GGTCGGGGATGCGCAAGCCGAAGGATCAGTCGGGT-CCCTCGTTGC-
826 GCGCTCAGCCGGCCAGAGGGGC-GGGATGCACAAGCCG-GGGATC-GTCGGGTCCCCTC--TGCG
*
18299500 TCGCTG-CAATCC
886 T-GCTGCCGATCC
* * * * *
18299512 TGTTGA-CATAACCCTCAATCTGGT-TCAATCTTAGACTGGGAATGAACTCCGTATGTCTTAGCC
1 TGCT-ACCATAACCCTCGATCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
18299575 AACCGACGAAACGAGCGGGCAGACGGGCGGGCACTACGTCGGACAGAGAGACGGGATGCGCAAGC
64 AACCGACGAAACGAGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
18299640 CGTGGATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCATATTTCTGTGTGCCAATTCCATT
128 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* * *
18299705 CTTATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
193 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
18299770 CCCGTTTTCTATTTTTCATGATTTTCGAAACTTTCTGCGGTTCGAGATTTTTTAAAATTTTTTTG
258 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
* * *
18299835 AAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAA
323 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
18299900 ATTCAGCTAAAAATTCGAAGTGTACAAGGTTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAG
388 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
18299965 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
453 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * *
18300030 CTCAAGGTTTGATGAGGGATAGGGGGCAATATAAGGGCCAACTACAAGCAGCCATCGCACATCAT
518 CTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * *
18300095 GTGCG-AGCACCCCGCC-GG-CCCCTCGATCGTCGGAACCCTAATGCCACTGGTCAGG---T---
583 GTGCGCA-CACCCCCCCAGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* *
18300151 ----T-CTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCTCATGCCCGAGCCCAGC
647 GCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* * *
18300211 ATGTGCTGCCGTAACCCTCAG-CTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
712 ATGTGCTGCCGCAACCCTCGGTC-TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
18300275 CTGGGAATGAACTCTGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCA
776 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * *
18300340 GAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCTCTACATGCTGCCAATCC
841 GAGGGGCGGGATGCACAAGCCGGGGATC-GTCGGGTCCCCTCTGCGTGCTGCCGATCC
* ** * ** * * * * *
18300398 TGCTGCCGCAGCCCTTC-ATCTACTCAGATCTTAAACGGGGAATGAACTCTGTATGCTTAAGCCA
1 TGCTACCATAACCC-TCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * *
18300462 ACCGACGAAACGA---GCGGGCAAGCAGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCG
65 ACCGACGAAACGAGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* **
18300524 TGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAAGCCAATGCCATTTT
130 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* * *
18300589 TATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGACGACT
195 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
18300654 CGTTTTCTATTTTTCATGA-TTTTGAAAAATTTTTACGGTTTGAGATTTTTTAAAATTTTTTTGG
260 CGTTTTCTATTTTTCATGATTTTTG-AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* *
18300718 AAGGAGTTTTGGCCCCAAACTTGGAAGACGTAATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
324 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
18300783 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
389 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
18300848 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGC-CATTTAAGGGGGTGTGAGTT
454 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTT
* * *
18300912 CTCGAGCTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCT
518 CTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * *
18300977 TGTGCGCACA-CCCCGCTGGCCCCCCTGATCACCGGAATCCCAATGCCGTCGGTCAGGTTCTTCG
582 TGTGCGCACACCCCCCCAGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * ** * * * * *
18301041 ACGATACTCCGGTGATGGTATCCCGACGATGAAAAATGCGGTAGCAGCACATGCCCGAGCCCAGC
647 GCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* ** *
18301106 CTGTGCTGCCGCAACCCTCGGTCCCGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGAC
712 ATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * *
18301171 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGCGCGCGGGCGTTCAGCCGGCCAG
777 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * ** * *
18301236 AAGGTC-GGATGCGCAAGTTGAGGATCGATCGGGTCCCCTCCTGCGTGCTGCCAATCC
842 AGGGGCGGGATGCACAAGCCGGGGATCG-TCGGGTCCCCT-CTGCGTGCTGCCGATCC
* * * * *
18301293 TACTA-CAGCAACCCTCGGTCTGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
1 TGCTACCA-TAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
18301357 ACCCATGAAACGAGCGTGCGGGC
65 ACCGACGAAACGAGCG-GCGGGC
18301380 ACTCAGCCAG
Statistics
Matches: 4758, Mismatches: 588, Indels: 228
0.85 0.11 0.04
Matches are distributed among these distances:
881 5 0.00
882 417 0.09
883 86 0.02
884 62 0.01
885 7 0.00
886 130 0.03
887 55 0.01
888 4 0.00
889 1 0.00
893 7 0.00
894 373 0.08
895 865 0.18
896 619 0.13
897 285 0.06
898 218 0.05
899 780 0.16
900 21 0.00
901 46 0.01
902 560 0.12
903 150 0.03
904 3 0.00
905 29 0.01
906 35 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
TGCTACCATAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCCAGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
TGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
GCGGGATGCACAAGCCGGGGATCGTCGGGTCCCCTCTGCGTGCTGCCGATCC
Found at i:18298490 original size:26 final size:26
Alignment explanation
Indices: 18298454--18298506 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18298444 CTGATCCGAT
18298454 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18298480 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18298506 C
1 C
18298507 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18300279 original size:26 final size:26
Alignment explanation
Indices: 18300243--18300295 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18300233 TTGGTCCAAT
18300243 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18300269 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18300295 C
1 C
18300296 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18301167 original size:26 final size:26
Alignment explanation
Indices: 18301138--18301190 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18301128 CCCGTCCGAT
*
18301138 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18301164 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18301190 C
1 C
18301191 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18301491 original size:158 final size:157
Alignment explanation
Indices: 18301164--18301537 Score: 495
Period size: 158 Copynumber: 2.4 Consensus size: 157
18301154 ACTCCGTATG
* **
18301164 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGCGCGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG-GCGGGCACTCAGC
* * **
18301229 CGGCCAGAAGGTCGGATGCGCAAGTTGAGGATCGATCGGGTCCCCTCCTGCGTGCTGCCAATCCT
65 CAGCCAGAAGGGCGGATGCGCAAGCAGAGGATCGATCGGGTCCCCTCCTGCGTGCTGCCAATCCT
* *
18301294 ACTACAGCAACCCTCGGTCTGGCCTGAT
130 ACTACAGCAACCCTCGATCTGGCCTAAT
18301322 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG-GCGGGCACTCAGC
* **
18301387 CAGCCAGAGGGGCTGGATGCGCAAGCCAG-GGATCGATCGGGTCCCC-CTCTGCGTGCTGCTGAT
65 CAGCCAGAAGGGC-GGATGCGCAAG-CAGAGGATCGATCGGGTCCCCTC-CTGCGTGCTGCCAAT
* *
18301450 CCTGCTGCAGCAACCCTCGATCTGGTCC-AAT
127 CCTACTACAGCAACCCTCGATCTGG-CCTAAT
* * * *
18301481 CTTAGA-TGGGAATGAACTCCGTTTGCCTAAGCCAACCGACGAAACGAGCAGGCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC-GGCGGGC
18301538 GGGCGGGCAC
Statistics
Matches: 192, Mismatches: 19, Indels: 10
0.87 0.09 0.05
Matches are distributed among these distances:
158 117 0.61
159 72 0.38
160 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGGCGGGCACTCAGCC
AGCCAGAAGGGCGGATGCGCAAGCAGAGGATCGATCGGGTCCCCTCCTGCGTGCTGCCAATCCTA
CTACAGCAACCCTCGATCTGGCCTAAT
Found at i:18302216 original size:26 final size:26
Alignment explanation
Indices: 18302180--18302232 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18302170 CTGGTCTGAT
18302180 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
18302206 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
18302232 C
1 C
18302233 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:18302591 original size:205 final size:201
Alignment explanation
Indices: 18302228--18302632 Score: 542
Period size: 205 Copynumber: 2.0 Consensus size: 201
18302218 ATGAACTCCG
* * * *
18302228 TATGCCTAAGTCAACCCACGAAATGACCGTACAAGCGCTCAGTCGGCCAGAGGGGCGGGATGCGC
1 TATGCCTAAGTCAACCCACGAAACGACCGTACAAGCGCTCAGCCGGCCAGAGGGGCGAGATGAGC
*
18302293 AAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGATCCG
66 AAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTACTGCCGCAACCCTCGATCCG
**
18302358 GTCCAATCTTAGACTGAGAATGAACTCCGCATGCATAAGCCAACTGACAGAATGACCGAGCGGGC
131 GTCCAATCTTAGACTGAGAATGAACTCCGCATGCATAAGCCAACCCAC-GAA--A-CGAGCGGGC
18302423 GGGCGGGCAC
192 GGGCGGGCAC
* * * * *
18302433 TATGCCTAAGTTAACCCACGAAACGAGCGTGCGAGCGCTTAGCCGGCCAGAGGGGCGAGATGAGC
1 TATGCCTAAGTCAACCCACGAAACGACCGTACAAGCGCTCAGCCGGCCAGAGGGGCGAGATGAGC
** * * ** * *
18302498 AAGCCGGGGATCGGTTGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGTCGTTACCCTCGGTCTG
66 AAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTACTGCCGCAACCCTCGATCCG
* * * *
18302563 GTCCGATCTTAGACT-AGGAATTAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGGGCGGG
131 GTCCAATCTTAGACTGA-GAATGAACTCCGCATGCATAAGCCAACCCACGAAACGAGCGGGCGGG
18302627 CGGGCA
195 CGGGCA
18302633 GGCGGGCACT
Statistics
Matches: 175, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
201 18 0.10
202 1 0.01
204 4 0.02
205 152 0.87
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.17
Consensus pattern (201 bp):
TATGCCTAAGTCAACCCACGAAACGACCGTACAAGCGCTCAGCCGGCCAGAGGGGCGAGATGAGC
AAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTACTGCCGCAACCCTCGATCCG
GTCCAATCTTAGACTGAGAATGAACTCCGCATGCATAAGCCAACCCACGAAACGAGCGGGCGGGC
GGGCAC
Found at i:18304197 original size:26 final size:26
Alignment explanation
Indices: 18304168--18304220 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18304158 CTGATCCGAT
18304168 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
18304194 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
18304220 C
1 C
18304221 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:18305110 original size:26 final size:26
Alignment explanation
Indices: 18305074--18305126 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18305064 CCGGTCCGAT
*
18305074 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18305100 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18305126 C
1 C
18305127 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18305399 original size:159 final size:159
Alignment explanation
Indices: 18305100--18305468 Score: 515
Period size: 159 Copynumber: 2.3 Consensus size: 159
18305090 ACTTTGTATG
*
18305100 CTTAGACTGGGAATGAACT-CTGTATGCCTAAGTGAACCCACGAAACGAGCGTGCGGGCACTCAG
1 CTTAGACTGGGAATGAACTCCT-TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * **
18305164 TCAACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGTTCGGGTCCCCCTCTACGTGCTGTCGATC
65 CCAACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATC
** **
18305229 CTGCTGTCGTAACCCTCGGTCCGATCTGAT
130 CTGCTACCGTAACCCTCAATCCGATCTGAT
* *
18305259 CTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
** * * * *
18305324 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGACCGGGTCTCCCTCTGCGTGCTGTCGATCT
66 CAACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCC
* *
18305389 TGCTACCGTAACCCTCAATCTGGTCTGAT
131 TGCTACCGTAACCCTCAATCCGATCTGAT
* * * *
18305418 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCGACCGACGAAACGAGCG
1 CTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAGCG
18305469 GGCAGGCGGG
Statistics
Matches: 185, Mismatches: 24, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
159 183 0.99
160 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CAACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCC
TGCTACCGTAACCCTCAATCCGATCTGAT
Found at i:18306014 original size:11 final size:11
Alignment explanation
Indices: 18305990--18306024 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
18305980 ATCCCAGAAA
*
18305990 CCGATGATCTT
1 CCGATGAACTT
*
18306001 CCGGTGAACTT
1 CCGATGAACTT
18306012 CCGATGAACTT
1 CCGATGAACTT
18306023 CC
1 CC
18306025 AACGAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.20, C:0.31, G:0.20, T:0.29
Consensus pattern (11 bp):
CCGATGAACTT
Found at i:18306492 original size:11 final size:10
Alignment explanation
Indices: 18306476--18306541 Score: 55
Period size: 11 Copynumber: 6.5 Consensus size: 10
18306466 TTAATATTCT
18306476 TTTTATCTTTA
1 TTTT-TCTTTA
*
18306487 TTTTATTTTTA
1 TTTT-TCTTTA
*
18306498 TTTTTGTTTTA
1 TTTTT-CTTTA
*
18306509 CTTTTCTTTA
1 TTTTTCTTTA
18306519 -TTTT-TTTA
1 TTTTTCTTTA
*
18306527 TTTTTATTTA
1 TTTTTCTTTA
18306537 TTTTT
1 TTTTT
18306542 TTATTATTCT
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
8 4 0.08
9 8 0.16
10 14 0.29
11 23 0.47
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.80
Consensus pattern (10 bp):
TTTTTCTTTA
Found at i:18306497 original size:17 final size:16
Alignment explanation
Indices: 18306475--18306546 Score: 63
Period size: 18 Copynumber: 4.1 Consensus size: 16
18306465 TTTAATATTC
*
18306475 TTTTTATCTTTATTTTA
1 TTTTTATATTT-TTTTA
*
18306492 TTTTTATTTTTGTTTTA
1 TTTTTATATTT-TTTTA
*
18306509 CTTTTCTTTATTTTTTTA
1 -TTTT-TATATTTTTTTA
18306527 TTTTTATTTATTTTTTTA
1 TTTTTA--TATTTTTTTA
18306545 TT
1 TT
18306547 ATTCTGTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
16 1 0.02
17 19 0.41
18 21 0.46
19 5 0.11
ACGTcount: A:0.14, C:0.04, G:0.01, T:0.81
Consensus pattern (16 bp):
TTTTTATATTTTTTTA
Found at i:18306524 original size:29 final size:26
Alignment explanation
Indices: 18306492--18306546 Score: 74
Period size: 29 Copynumber: 2.0 Consensus size: 26
18306482 CTTTATTTTA
*
18306492 TTTTTATTTTTGTTTTACTTTTCTTTATT
1 TTTTTATTTTT-ATTTA-TTTT-TTTATT
18306521 TTTTTATTTTTATTTATTTTTTTATT
1 TTTTTATTTTTATTTATTTTTTTATT
18306547 ATTCTGTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 6 0.24
27 4 0.16
28 4 0.16
29 11 0.44
ACGTcount: A:0.13, C:0.04, G:0.02, T:0.82
Consensus pattern (26 bp):
TTTTTATTTTTATTTATTTTTTTATT
Found at i:18306536 original size:18 final size:18
Alignment explanation
Indices: 18306487--18306546 Score: 86
Period size: 18 Copynumber: 3.4 Consensus size: 18
18306477 TTTATCTTTA
*
18306487 TTTTATTTTTATTT-TTG
1 TTTTATTTTTATTTATTT
* *
18306504 TTTTACTTTTCTTTATTT
1 TTTTATTTTTATTTATTT
18306522 TTTTATTTTTATTTATTT
1 TTTTATTTTTATTTATTT
18306540 TTTTATT
1 TTTTATT
18306547 ATTCTGTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
17 12 0.32
18 25 0.68
ACGTcount: A:0.13, C:0.03, G:0.02, T:0.82
Consensus pattern (18 bp):
TTTTATTTTTATTTATTT
Found at i:18306542 original size:11 final size:10
Alignment explanation
Indices: 18306483--18306549 Score: 66
Period size: 11 Copynumber: 6.6 Consensus size: 10
18306473 TCTTTTTATC
18306483 TTTATTTTATT
1 TTTATTTT-TT
18306494 TTTATTTTTGT
1 TTTATTTTT-T
* *
18306505 TTTACTTTTC
1 TTTATTTTTT
18306515 TTTA--TTTT
1 TTTATTTTTT
*
18306523 TTTATTTTTA
1 TTTATTTTTT
18306533 TTTATTTTTT
1 TTTATTTTTT
18306543 TATTATT
1 T-TTATT
18306550 CTGTTTTCTT
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
8 7 0.15
10 18 0.38
11 22 0.47
ACGTcount: A:0.15, C:0.03, G:0.01, T:0.81
Consensus pattern (10 bp):
TTTATTTTTT
Found at i:18306635 original size:62 final size:61
Alignment explanation
Indices: 18306566--18306791 Score: 332
Period size: 64 Copynumber: 3.6 Consensus size: 61
18306556 TCTTTAAATA
*
18306566 AAAATCAAAATTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTG
1 AAAATCAAAATTTCCAAAAAAAAACATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTG
* *
18306628 AAAATCAAAGTTTCCAAAAAAAAAAACATTTTTGGGTAAAAGTTGAAAGTATCAATTTTCCTTA
1 AAAATCAAAATTTCC--AAAAAAAAACATTTTTGGG-AAAAGTTGAAAGTATCAATTTTCCTTG
18306692 AAAAT-AAAATTT-C-AAAAAAAACAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
1 AAAATCAAAATTTCCAAAAAAAAACA-TTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTG
*
18306752 AAAATCAAAGTTTCCAAAAAAAAACATTTTTGGGGAAAAG
1 AAAATCAAAATTTCCAAAAAAAAACATTTTT-GGGAAAAG
18306792 AACAACCATC
Statistics
Matches: 149, Mismatches: 6, Indels: 18
0.86 0.03 0.10
Matches are distributed among these distances:
59 10 0.07
60 37 0.25
61 8 0.05
62 28 0.19
63 20 0.13
64 46 0.31
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.30
Consensus pattern (61 bp):
AAAATCAAAATTTCCAAAAAAAAACATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTG
Found at i:18306727 original size:124 final size:124
Alignment explanation
Indices: 18306564--18306791 Score: 374
Period size: 124 Copynumber: 1.8 Consensus size: 124
18306554 TTTCTTTAAA
*
18306564 TAAAAATCAAAATTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGA
1 TAAAAATCAAAATTTCCAAAAAAAAATATTTTGAGGGAAAAGTTGAAAGTATCAATTTTCCTTGA
*
18306629 AAATCAAAGTTTCCAAAAAAAAAAACATTTTTGGGTAAAAGTTGAAAGTATCAATTTTCCT
66 AAATCAAAGTTTCC--AAAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
18306690 TAAAAAT-AAAATTT-CAAAAAAAACAGT-TTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTT
1 TAAAAATCAAAATTTCCAAAAAAAA-A-TATTTTGAGGGAAAAGTTGAAAGTATCAATTTTCCTT
18306751 GAAAATCAAAGTTTCCAAAAAAAAACATTTTTGGGGAAAAG
64 GAAAATCAAAGTTTCCAAAAAAAAACATTTTTGGGGAAAAG
18306792 AACAACCATC
Statistics
Matches: 98, Mismatches: 2, Indels: 8
0.91 0.02 0.07
Matches are distributed among these distances:
122 24 0.24
124 53 0.54
125 13 0.13
126 8 0.08
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.30
Consensus pattern (124 bp):
TAAAAATCAAAATTTCCAAAAAAAAATATTTTGAGGGAAAAGTTGAAAGTATCAATTTTCCTTGA
AAATCAAAGTTTCCAAAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:18309958 original size:15 final size:16
Alignment explanation
Indices: 18309933--18309964 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
18309923 TTTGTATACA
18309933 TGCATTTTTCATTCAT
1 TGCATTTTTCATTCAT
18309949 TGCA-TTTTCATTCAT
1 TGCATTTTTCATTCAT
18309964 T
1 T
18309965 ACACTTAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.19, C:0.19, G:0.06, T:0.56
Consensus pattern (16 bp):
TGCATTTTTCATTCAT
Found at i:18310864 original size:26 final size:26
Alignment explanation
Indices: 18310828--18310880 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18310818 CTGGTCTGAT
18310828 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18310854 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18310880 C
1 C
18310881 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18311399 original size:26 final size:26
Alignment explanation
Indices: 18311363--18311436 Score: 130
Period size: 26 Copynumber: 2.8 Consensus size: 26
18311353 GTTGGCATGC
18311363 ACTGGGAATGAACTCTGTATGCTTAG
1 ACTGGGAATGAACTCTGTATGCTTAG
*
18311389 ACTGGGAATGAACTATGTATGCTTAG
1 ACTGGGAATGAACTCTGTATGCTTAG
*
18311415 ACTGGGAATGAACTCCGTATGC
1 ACTGGGAATGAACTCTGTATGC
18311437 CTAAGTTAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (26 bp):
ACTGGGAATGAACTCTGTATGCTTAG
Found at i:18311893 original size:556 final size:555
Alignment explanation
Indices: 18310828--18311919 Score: 1539
Period size: 556 Copynumber: 2.0 Consensus size: 555
18310818 CTGGTCTGAT
* * **
18310828 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACTT
1 CTTAGACTGGGAATGAACTACGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
18310893 ACAAAATGAGCTTGCGGGGGCTCAGCCGGCCAGAAGGGCGAGATACGCAAGCTAGGGATCGATCG
66 ACAAAACGAGCATACGGGCGCTCAGCCGACCAGAAGGGCGAGATACGCAAGCCAGGGATCGATCG
* * * *
18310958 GGTCTCTCTCTACGTGCTGCCAATCCTCCTACTGCAACCCTCGGTCTGATCCAATCTTAGACTGG
131 GGTCCCCCTCTACGTGCTGCCAATCCTACTACCGCAACCCTCGGTCTGATCCAATCTTAGACTGG
* * * * **
18311023 GAATGAACTCCGTATGCCTAATCCAACTGACGAAACGAGCGGATAGGCGGGCGGGCACTACGCCA
196 GAATGAACTCCGTAGGCCTAAGCCAACCGACGAAACGAGCGGACAGGCAAGCGGGCACTACGCCA
**
18311088 GCCAGAGAGACAGCTGTTCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
261 GCCAGAGAGACAGCTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
18311153 TATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTGA
326 TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCA
* *
18311218 CGTGAAGTTTCATGGCAAGACGACTCCTTTTTTATTTTTCACGATTTTCGAAATTTTTACGGTTC
391 CGTGAAGTTTCATGGCAAGACGACTCCGTTTTTATTTTTCACGATTTTCGAAATTTTTACGGTTA
* ** *
18311283 GAGATTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCTAACATGGTAGACGTGATCCTTGTA
456 GAGATTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCAACTAACATAGTAGACGTGATCCTTGTA
18311348 TGTTTGTTGGCATGCACTGGGAATGAACTCTGTATG
521 T-TTTGTTGGCATGCACTGGGAATGAACTCTGTATG
* *
18311384 CTTAGACTGGGAATGAACTATGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCC
1 CTTAGACTGGGAATGAACTACGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * ** *
18311449 ACGAAACGAGCATACGGGCGCTCAGCCGACCAGAGGGGCGAGATGTGCAAGCCGGGGATCG-TCC
66 ACAAAACGAGCATACGGGCGCTCAGCCGACCAGAAGGGCGAGATACGCAAGCCAGGGATCGAT-C
* * * * ** *
18311513 GGGTCCCCCTCTGCGTGCTGTCAATCCTACTGCCGCAACCCTTGGT-TCGATCTGATCTTAGATT
130 GGGTCCCCCTCTACGTGCTGCCAATCCTACTACCGCAACCCTCGGTCT-GATCCAATCTTAGACT
* * * * *
18311577 GGGAATGAACTCCGTAGGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCAAGCGGGCACTGCGT
194 GGGAATGAACTCCGTAGGCCTAAGCCAACCGACGAAACGAGCGGACAGGCAAGCGGGCACTACGC
* * *
18311642 CGGCCAGAGAGGCAGGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
259 CAGCCAGAGAGACA-GCTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
18311707 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
323 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCT
* *
18311772 TCTCGTGAAGTTTCATGGCAAGACGACT-CGTTTTTATTTTTCACGATTTTTGAAACTTTTTACA
388 TCACGTGAAGTTTCATGGCAAGACGACTCCGTTTTTATTTTTCACGATTTTCGAAA-TTTTTAC-
* * *
18311836 GTTTAG-GA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-AACTGAACTTATTAGACGTGATC
451 GGTTAGAGATTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCAACT-AACATAGTAGACGTGATC
*
18311898 CTTGTATTTTTTTGGCATGCAC
515 CTTGTATTTTGTTGGCATGCAC
18311920 AAAAAAATTC
Statistics
Matches: 470, Mismatches: 60, Indels: 13
0.87 0.11 0.02
Matches are distributed among these distances:
555 18 0.04
556 304 0.65
557 144 0.31
558 4 0.01
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.29
Consensus pattern (555 bp):
CTTAGACTGGGAATGAACTACGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACAAAACGAGCATACGGGCGCTCAGCCGACCAGAAGGGCGAGATACGCAAGCCAGGGATCGATCG
GGTCCCCCTCTACGTGCTGCCAATCCTACTACCGCAACCCTCGGTCTGATCCAATCTTAGACTGG
GAATGAACTCCGTAGGCCTAAGCCAACCGACGAAACGAGCGGACAGGCAAGCGGGCACTACGCCA
GCCAGAGAGACAGCTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCA
CGTGAAGTTTCATGGCAAGACGACTCCGTTTTTATTTTTCACGATTTTCGAAATTTTTACGGTTA
GAGATTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCAACTAACATAGTAGACGTGATCCTTGTA
TTTTGTTGGCATGCACTGGGAATGAACTCTGTATG
Found at i:18312310 original size:26 final size:26
Alignment explanation
Indices: 18312281--18312333 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18312271 CTGGTCCGAT
18312281 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18312307 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18312333 C
1 C
18312334 ATGAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18313903 original size:716 final size:718
Alignment explanation
Indices: 18312462--18313921 Score: 2194
Period size: 716 Copynumber: 2.0 Consensus size: 718
18312452 AGTTCGGTCT
** *
18312462 GATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCTAACCGACGAAACGAACGGGCGGGCGGAC
1 GATCTTAGACTGGGAATGAACTCCGCATGAATAAGCCAACCGACGAAACGAACGGGCGGGCGG--
* * * * * *
18312527 AGGCGGGCAGGCACTACGTCGGCTAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTT
64 AGGCGGCCAGCCAATACGTCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTA
** *
18312592 GGTGGGTTTAGACACATCTTCATATTTCTGTGTGCCAATGGCATTTTTATGGCTTGTAAATTCAG
129 GGTGGGTTTAGACACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAG
* *
18312657 ACAATGGTCCCTTAAGCTTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
194 ACAATGGTCCCTTAAGCCTTCACATGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * *
18312722 ATTTCCGAAACCTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCATAAGGAATTTGGCCCCAAAC
259 ATTTCCAAAACCTTTTGCGGTTCGGGATTTTTTAAAATTTCTTCAGAAGGAATTTGGCCCCAAAC
* * *
18312787 TTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAATATTCAGCGAAAAACTCGAAGT
324 TTGGTAGACGTGATCCTTGTATTATTTTTGGCATGCACAAAAAAATTCAGCGAAAAACTCGAAGT
*
18312852 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCA
389 GTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCA
* *
18312917 GCAAACTGTAAAATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
454 GCAAACTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
18312982 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
519 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
** * * * * *
18313047 CCCGATCGTCGAAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTTCGGTGATGGTGCCCT
584 CCCGATCACCGAAACCCAAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCA
* *
18313112 GACGAAGAAAAAAATGGCACCAACACATGCCCAAGCCCAGCATCTGCTGCCGTAACCCTCGATCA
649 GACGAAGAAAAAAATGGCACCAACACATGCCCAAGCCCAGCATCTGCTACCATAACCCTCGATCA
**
18313177 AGTTC
714 AGACC
* * *
18313182 GATCTTAGACTGGGAATGAACTCTGTATGAATAAGCCAACCGACGAAACGAGCGGGCGGGC-G-G
1 GATCTTAGACTGGGAATGAACTCCGCATGAATAAGCCAACCGACGAAACGAACGGGCGGGCGGAG
*
18313245 GCGGCCAGCCAATAC-TCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAG
66 GCGGCCAGCCAATACGT-CGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAG
* *
18313309 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
130 GTGGGTTTAGACACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAGA
*
18313374 CAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
195 CAATGGTCCCTTAAGCCTTCACATGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
** * * * * *
18313439 TTTTTAAAACTTTTTGCTGTTTGGGATTTTTTAAAATTTCTTCGGAAGGATTTTTGGCCCCAAAC
260 TTTCCAAAACCTTTTGCGGTTCGGGATTTTTTAAAATTTCTTCAGAAGGA-ATTTGGCCCCAAAC
* * *
18313504 TTGGTAGGCGTGATCCTTGTATTATTTTTGTCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
324 TTGGTAGACGTGATCCTTGTATTATTTTTGGCATGCACAAAAAAATTCAGCGAAAAACTCGAAGT
* * *
18313569 GTACAAGATTTTGTGAGCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTA
389 GTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCA
*
18313634 GTAAACCTGTAAAATCTCAAATGCTCTTTAA-AGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
454 GCAAA-CTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
* * * * *
18313698 -GGGGTCAATATAAGGGCCAAGTACTAGCACCCATCGTACATCATGTGTGCATACCCCCCGGCCC
518 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* *
18313762 CCCCGATCACCGGAACCCAAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCC
583 CCCCGATCACCGAAACCCAAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTG-CC
* * * * *
18313827 CAG-CGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCATAACCCTCGCT
647 CAGACGAAGAAAAAAATGGCACCAACACATGCCCAAGCCCAGCATCTGCTACCATAACCCTCGAT
**
18313891 CTGGACC
712 CAAGACC
*
18313898 GATCTTAGACTGGGAATTAACTCC
1 GATCTTAGACTGGGAATGAACTCC
18313922 CTATGCTTAG
Statistics
Matches: 665, Mismatches: 71, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
715 1 0.00
716 411 0.62
717 173 0.26
718 24 0.04
719 1 0.00
720 55 0.08
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (718 bp):
GATCTTAGACTGGGAATGAACTCCGCATGAATAAGCCAACCGACGAAACGAACGGGCGGGCGGAG
GCGGCCAGCCAATACGTCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
TGGGTTTAGACACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAGAC
AATGGTCCCTTAAGCCTTCACATGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
TTCCAAAACCTTTTGCGGTTCGGGATTTTTTAAAATTTCTTCAGAAGGAATTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTATTTTTGGCATGCACAAAAAAATTCAGCGAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGC
AAACTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
CGATCACCGAAACCCAAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCAGA
CGAAGAAAAAAATGGCACCAACACATGCCCAAGCCCAGCATCTGCTACCATAACCCTCGATCAAG
ACC
Found at i:18316410 original size:26 final size:26
Alignment explanation
Indices: 18316372--18316421 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18316362 ACGATCCAAT
* *
18316372 CTTAGACTTGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18316398 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
18316422 CGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18319761 original size:26 final size:26
Alignment explanation
Indices: 18319721--18319770 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18319711 CTAGCATGTG
*
18319721 CTTAGACGGGGAATGAACTCCGTATT
1 CTTAGACGGGAAATGAACTCCGTATT
*
18319747 CTTAGACTGGAAATGAACTCCGTA
1 CTTAGACGGGAAATGAACTCCGTA
18319771 AGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGAAATGAACTCCGTATT
Found at i:18320190 original size:26 final size:26
Alignment explanation
Indices: 18320161--18320213 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18320151 CCGATCCGAT
*
18320161 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
*
18320187 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
18320213 C
1 C
18320214 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCCGTATG
Found at i:18321082 original size:26 final size:26
Alignment explanation
Indices: 18321053--18321103 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
18321043 CAGTCTGATC
18321053 TTAGACTGGGAATGAACTCTGTTTGG
1 TTAGACTGGGAATGAACTCTGTTTGG
18321079 TTAGACTGGGAATGAACTCTGTTTG
1 TTAGACTGGGAATGAACTCTGTTTG
18321104 CCTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.12, G:0.29, T:0.35
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTTTGG
Found at i:18321746 original size:892 final size:887
Alignment explanation
Indices: 18319956--18323594 Score: 4622
Period size: 892 Copynumber: 4.1 Consensus size: 887
18319946 CAAAATGAGC
* * * *
18319956 GGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCAAATCATGTGCACGCACCCCCCACCGACC
1 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG--CGCACACCCC-CCGGCC
* * **** * **
18320021 CCCCCGATAG-CTGAAACCCCAATGCCACCAGTCAGGTTCTCTTGTGATGCTCCGGTGATGGTGC
63 CCCCCGATCGTC-GAAACCCCAATGCCACCGGTCAGGTTCTCCAACGATGCTCTGACGATGGTGC
* ** * *
18320085 CCTGGTGATGAAAAATGGGGCACCAGCACATGCTCGAGCCCAGCATGTGCTTCCGCAACCCTCGG
127 CC-GGTGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTT-CGCAACCCTCGG
* * *
18320150 TCC-GATCCGATCTTAGACTGGGAATAAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGC
190 TCCAG-TCCGATCTTAGACTGGGAATGAACTCTGTAT-CTTAAACTGGGAATGAACTCTGTATGC
* * * * *
18320214 CTAAGTCAACCCATGAAACAAGCGTGTGGGCACTCAACTGGCTAGAGGGGCAGGATGTGCAAGCC
253 CTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAACCGGCCAGAGGGGCGGGATGTGCAAGCC
* * * ** * * * *** *
18320279 GAGGATCAACCGGGTCCCCCTCTGTGTGCTGCCGAGCCTACTACCACAACCCTTGGTCTGGTCCG
318 GGGGATCGATCGCATCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCAATCTAGTCCG
* * *
18320344 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCAAATCGACGAAATGAGCGGGCGGGCACTAC
383 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTAC
* * * * * *
18320409 GTCAGCTAGAGAGACGAGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
448 GCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
** *
18320474 CTTCATATTTCTACATGGCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
513 CTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
18320539 CTTCACGTGAAGTTTCATGGCAAAACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTA
578 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
** * * * * *
18320604 CGACTCGAGATTTTTTAAAATTTTTCAGTAGGATTTTTGGCAACAAAACTTGGTAGACGTGATCC
643 CGGTTCGAGATTTTTTAAAATTTTTCGGAAGGAGTTTTGGC-CCCAAACTTGGTAGACGTGATCC
*
18320669 TTGTATTTTTGTTGGCATGCA-TAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
707 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
18320733 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCGACTGGCAGCAAACCTGTAAAATC
772 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
18320798 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTCATGAGGGATAGG
837 TCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
* *
18320849 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACATATCATGTGCGCACACCTCCCCGGCCCC
1 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGGCCCC
* * * * *
18320914 CCCGATCGTCGTAACCCTAATGCTACCGGTCAAGTTCTCTAACGATGCTCTGACGATGGTGCCCT
65 CCCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCAACGATGCTCTGACGATGGTGCCC-
* ** * *
18320979 GGGGAAGAAAAATGTGACACCAGCACATGCCCGAGCCTAGCATCTGCTGTCGCAACCCTCGGTCC
129 GGTGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCT-TCGCAACCCTCGGTCC
* * * * *
18321044 AGTCTGATCTTAGACTGGGAATGAACTCTGTTTGGTTAGACTGGGAATGAACTCTGTTTGCCTAA
193 AGTCCGATCTTAGACTGGGAATGAACTCTGTAT-CTTAAACTGGGAATGAACTCTGTATGCCTAA
** * * * * * * *
18321109 GTCAACCCATAAAACGAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGTGGGATGTGCATGCCAGGG
257 GTCAACCCACGAAACAAGCGTGCGGGCACTCAACCGGCCAGAGGGGCGGGATGTGCAAGCCGGGG
* * * * * *
18321174 ATCGATCGCATCCCCCTCTGCGTGCTGCCGATCCTACTGCCATAACCCTCGATCAAAGACTGATT
322 ATCGATCGCATCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCAATC-TAGTCCGATC
* *
18321239 TTAGACTGGGAATGAAGTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTATGCC
386 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTACGCC
**
18321304 GGCCAAAGAGACGGGATGCGCATTCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
451 GGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
*
18321369 CATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
516 CATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * *
18321434 CACGTGAAGTTTAATGGCAAGACGACTCATTTTCTATTTTACACGATTTTTGAAACTTTTTACAG
581 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* * * *
18321499 TTTGGGA-TTTTTAAAACTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTG
646 TTCGAGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
18321563 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
710 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
18321628 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTTTAAAATCTCA
775 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
18321693 AATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATG
840 AATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
*
18321741 GGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCTCCCTGGCCC
1 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCC-GGCCC
* * ** * * * * *
18321806 CCCCTGATTGTC-AGAACCTCAATGCCGTCGATCAGGTTCTCCAGCAATGCTTTGGCGATGGTGC
64 CCCC-GATCGTCGA-AACCCCAATGCCACCGGTCAGGTTCTCCAACGATGCTCTGACGATGGTGC
** * * * * *
18321870 ACCGACGAAGAAAAATACGACACTAGTACATGCCCGAGTCCAGCATGTGC-T-GCCACAAC-C-G
127 -CCGGTGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTTCGCAAC-CCTCGG
18321931 T-CA-----ATC-T--A-T-----T---C-C-G-ATCTTAAACTGGGAATGAACT-TCGTATGCC
190 TCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATCTTAAACTGGGAATGAACTCT-GTATGCC
* * * * *
18321974 TAAGTGAACCCACGAAACAAGCGTGCGGGCACTCAGCCGGCCAGAGGGGAGGGATACT-CAAGTC
254 TAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAACCGGCCAGAGGGGCGGGAT-GTGCAAGCC
* * *
18322038 GGGGATCG-GC-CAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAATCTGGTC
318 GGGGATCGATCGCA--TCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCAATCTAGTC
* ** *
18322101 CGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACTAACGAAATGAGCGGGCGGGCGGG
381 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGAGCGGGCGGG
* * * ** * * *
18322166 CATTACGTCGACCTGAGAGAAGGGATGCGCAAGCCGCGGATTGATAGGGTGGTAGGTGGGTTTAG
442 CACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
18322231 GCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
507 GCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
18322296 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAAC
572 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* *
18322361 TTTTTACGGTTCGGGATTTCTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
637 TTTTTACGGTTCGAGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
18322426 TGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTTGAACTGTACAAGATT
701 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
18322491 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACCGACAGCAAACCTGT
766 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
18322556 AAAATCTCAAATGCTCTTT-AAGCGGGAGTGAGTTCTCAAGGTTTGGTGAGGGATA-G
831 AAAATCTCAAATGCTCTTTAAAG-GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
* **
18322612 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCTAGCCCCC
1 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* ** * * * **
18322677 CCGATCGCCGAAACCCCAATGCCGTCGGTTAGGTTCTCCGATGATGCTC-GAGCGATGACGCCAC
66 CCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCAACGATGCTCTGA-CGATGGTGCC-C
* * *
18322741 GGTGAAGAAAAATACGGCACCAACACAT-CCCGAGCCCAGCATGTGCTACTGCAACCCTCGGTCC
129 GGTGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTTC-GCAACCCTCGGTCC
* * *
18322805 AGTCCGATCTTAGACTGGGAATGAACCCT-TATTCTTAGACTGGGAATGAACTCTGTATGCCGAA
193 AGTCCGATCTTAGACTGGGAATGAACTCTGTA-TCTTAAACTGGGAATGAACTCTGTATGCCTAA
* * * * * * * * *
18322869 GTCAACCAACGGAACGAGTGTGCGGGCGCTCAACTGGCCAGTGGGGCGGGATGCGCAAGTCGGGG
257 GTCAACCCACGAAACAAGCGTGCGGGCACTCAACCGGCCAGAGGGGCGGGATGTGCAAGCCGGGG
* ** * * ** * * *
18322934 ATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCTGCAACCTTCAATCCAGTCTGATCT
322 ATCGATCGCATCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCAATCTAGTCCGATCT
*
18322999 TAGACTGGGAATGAACTCCGTATGCCTAA-CGCAACCGATGAAACGAGCGGGCGGGCGGGCACTA
387 TAGACTGGGAATGAACTCCGTATGCCTAAGC-CAACCGACGAAACGA----GCGGGCGGGCACTA
* * *
18323063 CGCCGGCCAAAGAGACTGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGTACA
447 CGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
18323128 TCTTCATATTTCTATGTGGCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTTCCTTAAG
512 TCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * *
18323193 CCTTCGCGTGAAGTTTCATAGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAATTTTTT
577 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * *
18323258 ACGGTTCGAGATTTTTTTTAAATATTTTCGGAAGAAGTTTTAGCCCCAAACTTGGTTGACGTGAT
642 ACGGTTCGAGA-TTTTTTAAAAT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
18323323 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAAATCGAAGTGTACAAGATTTTGT
705 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
18323388 GATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAA
770 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
18323453 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
835 TCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
* * *
18323506 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACAACCCCCCAGCCAC
1 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCGGCCCC
* *
18323571 CCTGATCGTCGGAACCCCAATGCC
65 CCCGATCGTCGAAACCCCAATGCC
18323595 GCCGATGGTG
Statistics
Matches: 2397, Mismatches: 282, Indels: 132
0.85 0.10 0.05
Matches are distributed among these distances:
866 2 0.00
867 63 0.03
868 190 0.08
869 12 0.01
870 9 0.00
871 263 0.11
872 219 0.09
875 1 0.00
877 3 0.00
878 1 0.00
880 2 0.00
881 2 0.00
883 1 0.00
884 3 0.00
886 1 0.00
888 2 0.00
889 4 0.00
890 3 0.00
891 334 0.14
892 847 0.35
893 265 0.11
894 136 0.06
895 34 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
CCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCAACGATGCTCTGACGATGGTGCCCGG
TGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTTCGCAACCCTCGGTCCAGT
CCGATCTTAGACTGGGAATGAACTCTGTATCTTAAACTGGGAATGAACTCTGTATGCCTAAGTCA
ACCCACGAAACAAGCGTGCGGGCACTCAACCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCG
ATCGCATCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCAATCTAGTCCGATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTACGCCGGCCA
AAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA
GATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
Found at i:18323676 original size:26 final size:26
Alignment explanation
Indices: 18323647--18323699 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18323637 CCGGTTCGAT
18323647 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18323673 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18323699 C
1 C
18323700 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18325370 original size:904 final size:893
Alignment explanation
Indices: 18323634--18327086 Score: 2554
Period size: 848 Copynumber: 3.9 Consensus size: 893
18323624 GGCAACCCTT
* *
18323634 GGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAATTCCGTATG
1 GGTCCGGTTCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAATTCCGTATG
** * *
18323699 CCTAAGTCAACCCACGAAATTAGCATGCGGGCGCTTAGCCGACCAGAGGGGCGGGATGCGCAAGC
66 CCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGC
* * ** *
18323764 CGGGGATCAATCGGGTCCCCCTCTGTGTGGTACCGCAACCCTCGGTTTGGTCCTATCTTAGACTG
131 CGAGGATCAATCGGATCCCCCTCTGTGTCCTACCGCAACCCTCGGTCTGGTCCTATCTTAGACTG
* * * * * * *
18323829 GGAATGAGCTCTATATGCCTAAGCCAACCGACAAAATGAGCAGGCGGGTGGGAGGGCGGGCGCTA
196 GGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCAGGCGGGCGAGAGGGCGGCCACTA
* * * * * * * *
18323894 CGCCGGCCAGAGAGGTGGGATGCGCAGGCCGTGGATTGTTAAGGTGGTAGGTGGGTTTCGGAACA
261 CGCCGGCCAAAGAAGCGGGATGCGCAAGCCCTGAATCGATAAGGTGGTAGGTGGGTTTCGGAACA
** *
18323959 TCTTCAAATTTTTGTGTGCCAAAGCCATTTTTTAAGGCTTGTATATTCATACAATGGTCCCTTAA
326 TCTTCAAATTTTTGCATGCCAAAGCCATTTTTTAAGGCTTGTAAATTCATACAATGGTCCCTTAA
** * *
18324024 ACCTTCACGTGAAGTTTTTTGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTTCAACCTTTT
391 ACCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTCAAACTTTT
* * * * * *
18324089 TGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAATTTGTAGACGTGATC
456 TGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGCCCCCAAATTGGTAGACGTGATC
* * *
18324154 CTTGTATATTTGTTGGCATGCATAAAAACATTCAGCTAAAACCTAAAAGTGTATAAGATTTTGTG
521 CTTGTATATTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTAAAAGTGTACAAGATTTTGTG
* * *
18324219 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAAT
586 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTAGCAGCAAACCTGTAAAAT
*
18324284 CTCAAATGCTCTTTAAGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAAGGGGCCAATATAAGG
651 CTCAAATGCTCTTTAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGG
* ** *
18324349 GCCAAGTACTGGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGCA
716 GACAAGTACTGGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGAACCCCCGATCGTCGAA
* *
18324414 ACCCCAATGCCGCCGGTCAGGTTTTCCGGCGATGCTCCGGCGATGGTGCCCCGACAAGGCAAAAA
781 ACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGGCGATGGTGCCCCGACAAGGCAAAAA
18324479 TACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACACTC
846 TACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACACTC
* *
18324527 GGTCCGGTTCGATCTTAGATTGAGAATGAACTCCATATGCTTAGATTGGGAATGAACTT-CGTAT
1 GGTCCGGTTCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAA-TTCCGTAT
* * *
18324591 GCCTAAGTCAACCCACGAAACAAGCTTGTGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
65 GCCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAG
* * *
18324656 CCGAGGATCGATCGGATCCCCCTTTACGTGCTCCTAATCTTGTTGCCTTAACCCTCGGTCTGGT-
130 CCGAGGATCAATCGGATCCCCCTCT--GTG-TCCT-A-C----CG-C--AACCCTCGGTCTGGTC
* ** * *
18324720 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATTGACGAAACGAGCGGGCGGGCGA
183 CT-ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCAGGCGGGCGA
* *
18324785 GCGGGCGGCCACTACGCCGGCCAAAGAAGCGGGATGCGCAAGCCCTGAATCGATAGGGTGGTAGG
247 GAGGGCGGCCACTACGCCGGCCAAAGAAGCGGGATGCGCAAGCCCTGAATCGATAAGGTGGTAGG
* * * * *
18324850 TGGGTTT-GGCACATCTTCATATTTTTGCATGCGAATGCCA-TTTTTATGGCTTGTAAATTCATA
312 TGGGTTTCGGAACATCTTCAAATTTTTGCATGCCAAAGCCATTTTTTAAGGCTTGTAAATTCATA
** *
18324913 CAATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
377 CAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* *
18324978 TTTTTGAAACTTTTTGCTGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGCCCCCAAAC
442 TTTTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGCCCCCAAA-
* * * **
18325043 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGGACAAAAACATTCAGCTAAAAACTTGAAGT
506 TTGGTAGACGTGATCCTTGTATATTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTAAAAGT
*
18325108 GTACAAGATTTTGTGACCATTTGAACAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTAGCA
571 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTAGCA
18325173 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
636 GCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
* *
18325238 GGGGGCCAATATAAGGGACAAGTACTGGCACCCATCGCACATCATGTGCGCACACCTCCCT-GGA
700 AGGGGCCAATATAAGGGACAAGTACTGGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGA
* * *
18325302 ACCCCCGATCGTTGAAACCCCATTGCC-CTCGGTCAGGTTCTCCAGCGATGCTTCGGCGATGGTG
765 ACCCCCGATCGTCGAAACCCCAATGCCGC-CGGTCAGGTTCTCCAGCGATGCTCCGGCGATGGTG
** *
18325366 CCCCGACGAA-G-AAAAATTTG-CTATC-G--CA------A--CC--C---T-C---CGT----C
829 CCCCGAC-AAGGCAAAAATACGAC-ACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACAC
18325404 T-
892 TC
* * * * * ***** * *
18325405 GGT-C---T-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA--ACG-A-
1 GGTCCGGTTCGATCTTAGACTGAGAATGAACTCCATATG-CTTAGACTGGGAATGAATTCCGTAT
* ** * * * * ** **
18325461 GCGTGCGGGC-ACTCA-G---CTAGCCA-GAGGGACG-GGATG-CGTA--A-ATCGG--GGAT-C
65 GCCT-AAGTCAACCCACGAAACAAG-CATGCGGG-CGCTCA-GCCG-ACCAGAGGGGCAGGATGC
** *** * * * * * * * ** * **
18325512 GACCGGGTCC--CCCTCTA-CGTGCTACCCATCCTGCTATCGTAACC-C-TCGATCCGAT-TCAA
125 G--CAAG-CCGAGGATCAATCG-GATCCCCCT-CTG-TGTCCT-ACCGCAACCCT-CGGTCT-GG
* * ** * * * ** * * * *
18325571 TCTTAGACTGGGAAT--GAACTCCGTA-TGCC-TAAGCCATTTG---A-TGA-AATGAGCGGGCG
181 TCCTA-TCTTAGACTGGGAA-T--GAACT-CCATATGCC-TAAGCCAACCGACAA--AACGAGCA
* * * * * * * * ** * **
18325627 GGTGGGCG-GACGGGC-ACTACGT-CGGCCAG--AGAGACGGGATGTGCAAGCCGTGGATCGATA
238 GGCGGGCGAGA-GGGCGGCCAC-TAC-GCCGGCCAAAGAAGCG--G-G-ATG-CG-CAAGCCCT-
** * **** * ** * ***
18325687 GGGT-GGT-AGGTTGGTTAAGGCACATCTTC---ATAT-TTC---TGCATGGCAATGCCATTTTT
293 GAATCGATAAGG-TGG-T-AGGTGGGT-TTCGGAACATCTTCAAAT-TTTTGC-ATGCCA--AAG
* *** * * * * * * * * * ** *
18325743 ACGGCTTGTAA--ATTCATACAATGGTCCCT-TAA--G--CCTT-CA-CGTGAAGTTTCA---TG
350 CCATTTTTTAAGGCTT-GTA-AAT--T-CATACAATGGTCCCTTAAACCTTCACG-TGAAGTTTC
* *
18325796 ---GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTT
409 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTCAAACTTTTTGCGGTTCGAGATTTTTT
* * *
18325858 AAAATTTTTTCGGAAA-GAGTTTTGGCCCCAAATTTGGTAGACGTGATCCCTGTATTTTTGTTGG
474 AAAATTTTTTC-GAAAGGAGTTTTGCCCCCAAA-TTGGTAGACGTGATCCTTGTATATTTGTTGG
* **
18325922 CATGCAC-AAAACAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
537 CATGCACAAAAAC-ATTCAGCTAAAAACTAAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * *
18325986 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTA
601 TGTCCCCATTTCAGACACTTTAACGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * * **
18326051 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCA
666 A-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGACAAGTACTGGCA
** * ** * * * *
18326116 CCCATCGCACATCATGTGCTTACA--CCCCTTGGCCCCCCCGATCGCCGGAACCCCAATGTCGTC
730 CCCATCGCACATCATGTGCGCACACCCCCCTCGGAACCCCCGATCGTCGAAACCCCAATGCCGCC
* * ** * ** *
18326179 GGTCTGGTTCTTC-GACGATGCTCCGATGATGGTGCCACGGTGAA-G-AAAAATACGGCACCAGC
795 GGTCAGGTTCTCCAG-CGATGCTCCGGCGATGGTGCC-CCGACAAGGCAAAAATACGACACCAGC
** * *
18326241 ACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC
858 ACATGCCCGAGCCCAGCATGTGCTGTCGTAACACTC
* * * * *
18326277 GGTCCGGTCCGATCTTAGATTGGGAATGAACTCCATATTCTTAGACTGGGAATGAACTCCGTATG
1 GGTCCGGTTCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAATTCCGTATG
* * * *
18326342 CCTAAGTCAACCAACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
66 CCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGC
* ** * *** * *
18326407 CGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCAATCCTACTGCTGCAACCCTTAATCCGGT-T
131 CGAGGATCAATCGGAT-CCCC-CT-C-TG-TG----TCCTAC--C-GCAACCCTCGGTCTGGTCC
* **
18326471 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGATGGGCGGG
184 T-ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGC--A--GGCGGG
* * * * * * *
18326536 C-AGGCGGGCAGG-CACTACGCCGGCTAGAG-AGACGGGATGCGCAAGCCGTGGATTGATATGGT
244 CGA-GAGGGC-GGCCACTACGCCGGCCAAAGAAG-CGGGATGCGCAAGCCCTGAATCGATAAGGT
* * * * * * * * *
18326598 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGGCAATGCCA-TTTTTATGGCTTGTAAA
306 GGTAGGTGGGTTTCGGAACATCTTCAAATTTTTGCATGCCAAAGCCATTTTTTAAGGCTTGTAAA
* * * *
18326662 TTCATACAGTGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTT
371 TTCATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * * *
18326727 TCACGATTTTTGAAATTTTTTACGGTTC-AGGATTTTTTTAAAATATTTTCGGAAGGTGTTTTAG
436 TCACGATTTTTCAAACTTTTTGCGGTTCGA-GA-TTTTTTAAAATTTTTTCGAAAGGAGTTTT-G
* * * *
18326791 -CCCCAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGCTTGCACAAAAGA-ATTCAGCCAAA
498 CCCCCAAA-TTGGTAGACGTGATCCTTGTATATTTGTTGGCATGCACAAAA-ACATTCAGCTAAA
* ** **
18326854 AAATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATT
561 AACTAAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACG
* *
18326919 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-GTGGAGTTCTCGAGGTTTG
626 GCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGT-GAGTTCTCAAGGTTTG
* * * ** *
18326983 ATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAA
690 ATGAGGGATAAGGGGCCAATATAAGGGACAAGTACTGGCACCCATCGCACATCATGTGCGCACAC
* * * *
18327048 CCCCC-CGG-CCACCCCGGTCGCCGGAACCCCAATGCCGCC
755 CCCCCTCGGAAC-CCCCGATCGTCGAAACCCCAATGCCGCC
18327087 AGTGGTGCCT
Statistics
Matches: 1997, Mismatches: 367, Indels: 377
0.73 0.13 0.14
Matches are distributed among these distances:
846 5 0.00
847 70 0.04
848 317 0.16
849 11 0.01
850 10 0.01
851 31 0.02
852 8 0.00
853 21 0.01
854 18 0.01
855 17 0.01
856 11 0.01
857 12 0.01
858 4 0.00
859 3 0.00
860 4 0.00
861 10 0.01
862 14 0.01
863 4 0.00
864 6 0.00
865 1 0.00
866 10 0.01
867 6 0.00
869 1 0.00
870 7 0.00
871 5 0.00
872 5 0.00
873 26 0.01
874 9 0.00
876 9 0.00
877 26 0.01
878 5 0.00
879 5 0.00
880 6 0.00
881 1 0.00
883 7 0.00
884 10 0.01
885 1 0.00
886 6 0.00
887 3 0.00
888 8 0.00
889 7 0.00
890 3 0.00
891 4 0.00
892 2 0.00
893 136 0.07
894 5 0.00
895 8 0.00
896 13 0.01
897 18 0.01
898 19 0.01
899 26 0.01
900 17 0.01
901 9 0.00
902 9 0.00
903 164 0.08
904 248 0.12
905 223 0.11
906 3 0.00
907 137 0.07
908 204 0.10
909 8 0.00
910 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (893 bp):
GGTCCGGTTCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAATTCCGTATG
CCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGC
CGAGGATCAATCGGATCCCCCTCTGTGTCCTACCGCAACCCTCGGTCTGGTCCTATCTTAGACTG
GGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCAGGCGGGCGAGAGGGCGGCCACTA
CGCCGGCCAAAGAAGCGGGATGCGCAAGCCCTGAATCGATAAGGTGGTAGGTGGGTTTCGGAACA
TCTTCAAATTTTTGCATGCCAAAGCCATTTTTTAAGGCTTGTAAATTCATACAATGGTCCCTTAA
ACCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTCAAACTTTT
TGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGCCCCCAAATTGGTAGACGTGATC
CTTGTATATTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTAAAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTAGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGG
GACAAGTACTGGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGAACCCCCGATCGTCGAA
ACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGGCGATGGTGCCCCGACAAGGCAAAAA
TACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACACTC
Found at i:18327165 original size:26 final size:26
Alignment explanation
Indices: 18327136--18327188 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18327126 CCGGTTCGAT
*
18327136 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18327162 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18327188 C
1 C
18327189 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18328058 original size:26 final size:26
Alignment explanation
Indices: 18328029--18328081 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18328019 CTGATCCGAT
18328029 CTTAGATTGAGAATGAACTCCGTATG
1 CTTAGATTGAGAATGAACTCCGTATG
* *
18328055 CTTAGATTGGGAATTAACTCCGTATG
1 CTTAGATTGAGAATGAACTCCGTATG
18328081 C
1 C
18328082 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGATTGAGAATGAACTCCGTATG
Found at i:18329492 original size:892 final size:883
Alignment explanation
Indices: 18327110--18330032 Score: 3705
Period size: 892 Copynumber: 3.3 Consensus size: 883
18327100 CGAAGAAAAA
* *
18327110 TGCCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAA
1 TGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAA
* ** * *
18327175 TGAACTCCGTATGCCTAAGTCAACTCACGAAATGAGCATGC-AGGCGCTTAGCCGGCCAGAGGGG
66 TGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGA-GCGCTCAGCCGGCCAGAGGGG
* * *
18327239 CGGGATGCGTAAGCTGGGGATCAATCGGGT--CCC-C--CA--CTGCG-T--GG-TACCGCAACC
130 CGGGATGCGCAAGCCGGGGATCAATCGGGTCCCCCTCTGCATGCTCCGATCCGGCTACCGCAACC
* * * *
18327293 CTCAGTTCGGTCCT-ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGAA-AAAATG
195 CTCAGTCCAGT-CTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC-AACGAAACG
* * *
18327356 AGCGGGCGGGCGGGAGGGCGGGCGCTATGCCGGCCAAAGAGGCGGGATGCGCAAGCCGTGGATTG
258 AGCGGGCGGGCGGGCGGGC-GGCACTA-GCCGGCCAAAGAGGCGGGATGCGCAAGCCGTGGATCG
* * * * *
18327421 ATAGGGTGGTAGGTGGGTTTCGGCACATCTTCAAATTTTTGTGTGCCAAAGCCATTTTTAAGGCT
321 ATAGGGTGGTAGGTGGGTTT-GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
* * * * * * * *
18327486 TGTATATTCATACCATGATCCCTTAAACCTTCACGTGAACTTTCTTGGCAAGATGACTCATTTTC
385 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * * *
18327551 TATTTTTTACGATTTTTCAAACTTTTTGCGGTTTGGGTTTTTTTAAAATTTTTTCAGAAGGTGTT
450 TATTTTTCACGA-TTTTCAAACTTTTTGTGG-TTCGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * * *
18327616 TTGGCCCCAAATTTGGTAGACGTGATCCTTGTATATTTGTTCGCATGCACAAAAAAATTCAGCTA
513 TTGGCCCCAAACTTGGTAGACGTGATCCTTGT-TTTTTTTTGGCATGCACAAAAAAATTCAGCTA
* *
18327681 AAACCTCAAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
577 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAA
*
18327746 TGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
641 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
18327811 TGATGAGTGATAAGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATTATGTGCGCAC
706 TGATGAGGGAT-AGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCG-AC
*
18327876 ACCCCCCTCGGCCCCTCGATCGTCGCAACCCCAATGCCGCCGGTCAGGTTTTTCGGCGATGCTCC
769 ACCCCCC-CGGCCCCTCGATCGTCGAAACCCCAATGCCGCCGGTCA---------GC-ATGCTCC
* * * * * *
18327941 GGCGATGGTGCCCCAGT-AAGGCAAAAATGCGGCTCCAGCACATGCCCGAGCCCAGCATGTGC
823 GACGATGGTGCCCCGGTGAA-G-AAAAATGCGGCACCAGCACATGCCTGAGCCTAGCATGGGC
* * * * * * *
18328003 TGTCGTAACCCTCGGTCTGATCCGATCTTAGATTGAGAATGAACTCCGTATGCTTAGATTGGGAA
1 TGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAA
* * * **
18328068 TTAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAATCGGCCAGAGGGGC
66 TGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGC
* * ** * * * * * * * * **
18328133 AGGATGCGCAAGCCGGGAATTGATCGGATCCCCCTTTACGTGCTCCTAATCCTGTTGCCTTAACC
131 GGGATGCGCAAGCCGGGGATCAATCGGGTCCCCCTCTGCATGCTCC-GATCCGGCTACCGCAACC
* * * **
18328198 CTCAGTCTAGTCTGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAG
195 CTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCAACGAAACGAG
* * *
18328263 CGGGCGGGCGAGCGGGCGGCCAGTGAGCCGGCCAAAGAGGCGGGATGCGCAAGCCGTCGATCGAT
260 CGGGCGGGCGGGCGGGCGG-CACT-AGCCGGCCAAAGAGGCGGGATGCGCAAGCCGTGGATCGAT
* *
18328328 AGGGTGGTAGGTGGGTTTGGCACATCTTCATATTTCTGCATGCGAATGCCATTTTTATGGCTTGT
323 AGGGTGGTAGGTGGGTTTGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
*
18328393 AAATTCATACAATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
388 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * *
18328458 TTTTCATGATTTTTGAAACTTTTTGCT-GTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTT
453 TTTTCACGA-TTTTCAAACTTTTTG-TGGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* *
18328522 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGGACAAAAACATTCAGCTAAA
515 GGCCCCAAACTTGGTAGACGTGATCCTTGT-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
* *
18328587 AACTCAAAGTGTACAAGATTTTGTGACCATTTGAACCAAGTGTCCCCATTTTAGACACTTTAATG
579 AACTCAAAGTGTACAAGATTTTGTGACCATTTGAA-AAAGTGTCCCCATTTCAGACACTTTAATG
*
18328652 GCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
643 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
18328717 ATGAGGGATAGGGGTCCAATATAAGGGACAAGTACTGGCACCCATCGCACATCATGTGCGACACC
708 ATGAGGGATAGGGG-CCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGACACC
* * *
18328782 CCCCCGGCCCCCTCGATCGCCGGAACCCCAATGGCC-CCGGTCAGC-TTCTCCGACGATGGTGCC
772 CCCCCGG-CCCCTCGATCGTCGAAACCCCAAT-GCCGCCGGTCAGCATGCTCCGACGATGGTGCC
*
18328845 CCGGTGAAGAAAAATACGGCACCAGCACATGCCTGAGCCTAGCATGGGC
835 CCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCTAGCATGGGC
* * * *
18328894 TGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACGGGGAA
1 TGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAA
* * * * * *
18328959 TGAGCTCTGTATGCCTAAGTTAACCCACGAAACAAGCGTGCGAGCGTTCAGCCGACTAGAGGGGC
66 TGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGC
* * *
18329024 GGGAAGCGCAAGCCGAGGATCAATCGAGTCCCCCTCTGCATGCTACCGATCCGGCTACCGCAACC
131 GGGATGCGCAAGCCGGGGATCAATCGGGTCCCCCTCTGCATGCT-CCGATCCGGCTACCGCAACC
* * * * *
18329089 CTCGGTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAAGGAA
195 CTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCAACGAAACGAG
* *
18329154 CGGGCTGGCGGGCGGGCTGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGAT
260 CGGGCGGGCGGGCGGGC-GGCACTA-GCCGGCCAAAGAGGCGGGATGCGCAAGCCGTGGATCGAT
*
18329219 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTG
323 AGGGTGGTAGGTGGGTTT-GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
* *
18329284 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAAACGACTCGTTTTCTA
387 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
*
18329349 TTTTTCACGATTTTCAAAACTTTTTGTGGTTCAGGAATTTTTAAAATTTTTTCGGAAGGAGTTTT
452 TTTTTCACGATTTTC-AAACTTTTTGTGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* *
18329414 GCCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTATTGGCATGCACAAAAAAATTCACCTAAA
515 GGCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTT-TTGGCATGCACAAAAAAATTCAGCTAAA
* *
18329479 AACTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAACGTGTCCCCATTTCAGACACTTTAATG
579 AACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAA-GTGTCCCCATTTCAGACACTTTAATG
* *
18329544 GCTACTGGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTG
643 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * *
18329609 ATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAG-ACCCATCGCACATGATGTGCGGACA-
708 ATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGC-GACAC
* *
18329672 CCCCCCGGCCCCTCGATCGTCGAAACCCCAAAGCCGTCGATCAGGTTCTCCGGCGATGCTCCGAC
771 CCCCCCGGCCCCTCGATCGTCGAAACCCCAATGCCG-C---C-GG---T-CAGC-ATGCTCCGAC
* *
18329737 GATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATG-CTCGAGCCTAGCATGGGC
826 GATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCTAGCATGGGC
* * *
18329795 GGCTGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAA
1 TGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAA
** * * * *
18329860 TGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGAGTGCGGGCGCTCAGTCGGCCAGAAGGGC
66 TGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGC
* ** * * ** *
18329925 GAGATGCGCAAGCCGGGGATC-GGCTGGGTCCCCCTCTGCGTGCTGTCGATCTTGCTACCACAAC
131 GGGATGCGCAAGCCGGGGATCAATC-GGGTCCCCCTCTGCATGCT-CCGATCCGGCTACCGCAAC
**
18329989 CCT-AGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGC
194 CCTCA-GTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGC
18330033 TTAGACTGGG
Statistics
Matches: 1758, Mismatches: 222, Indels: 92
0.85 0.11 0.04
Matches are distributed among these distances:
889 3 0.00
890 22 0.01
891 361 0.21
892 388 0.22
893 139 0.08
894 3 0.00
895 5 0.00
898 2 0.00
899 3 0.00
900 6 0.00
901 259 0.15
902 4 0.00
903 48 0.03
904 384 0.22
905 130 0.07
906 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (883 bp):
TGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGC
GGGATGCGCAAGCCGGGGATCAATCGGGTCCCCCTCTGCATGCTCCGATCCGGCTACCGCAACCC
TCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCAACGAAACGAGC
GGGCGGGCGGGCGGGCGGCACTAGCCGGCCAAAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
TCACGATTTTCAAACTTTTTGTGGTTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
AAACTTGGTAGACGTGATCCTTGTTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
AGTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
TAGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGACACCCCCCCGGCC
CCTCGATCGTCGAAACCCCAATGCCGCCGGTCAGCATGCTCCGACGATGGTGCCCCGGTGAAGAA
AAATGCGGCACCAGCACATGCCTGAGCCTAGCATGGGC
Found at i:18329857 original size:26 final size:26
Alignment explanation
Indices: 18329821--18329873 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18329811 CCGATCCGAT
*
18329821 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18329847 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18329873 C
1 C
18329874 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18330042 original size:26 final size:26
Alignment explanation
Indices: 18330006--18330058 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18329996 CTGGTCTGAT
18330006 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18330032 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18330058 C
1 C
18330059 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18330118 original size:185 final size:185
Alignment explanation
Indices: 18329818--18330195 Score: 587
Period size: 185 Copynumber: 2.0 Consensus size: 185
18329808 GATCCGATCC
* *
18329818 GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
18329883 CCCACGAAATGAGAGTGCGGGCGCTCAGTCGGCCAGAAGGGCGAGATGCGCAAGCCGGGGATCG-
66 CCCACGAAACGAGAGTACGGGCGCTCAGCCGGCCAGAAGGGCGAGATGCGCAAGCCGGGGATCGA
* * * *
18329947 GCTGGGTCCCCCTCTGCGTGCTGTCGATCTTGCTACCACAACCCTAGGTCTGGTCT
131 TC-GGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTAGGTCTAGTCT
18330003 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
18330068 CCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
66 CCCACGAAACGAGAGTACGGGCGCTCAGCCGGCCAGAAGGGCGAGATGCGCAAGCCGGGGATCGA
* * ** *
18330133 TCGGGTCCCCCTCTACGTGTTGTCGATCCTGCTGCTGCAACCCTCGGTCTAGTCT
131 TCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTAGGTCTAGTCT
18330188 GATCTTAG
1 GATCTTAG
18330196 GCCAGAAATG
Statistics
Matches: 175, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
185 174 0.99
186 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.21
Consensus pattern (185 bp):
GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGAGTACGGGCGCTCAGCCGGCCAGAAGGGCGAGATGCGCAAGCCGGGGATCGA
TCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTAGGTCTAGTCT
Found at i:18330361 original size:171 final size:174
Alignment explanation
Indices: 18330095--18330485 Score: 463
Period size: 176 Copynumber: 2.3 Consensus size: 174
18330085 CGGGCGCTCA
* * * *
18330095 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA-TCGATCGGGTCCCCCTCTACGTGTTGTCGA
1 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTCGATCGGGTCCCCCTCTACATGCTGCCAA
* *
18330159 TCCTGCTGCTGCAACCCTCGGTCTAGTCTGATC-T-TAGGCCAGAAATGAACTCCGTATGCCTAA
66 TCCTGCTGCCGCAACCCTCGGTCTAGTCTGATCATATAGACCAGAAATGAACTCCGTATGCCTAA
* *
18330222 GTCAACCAACGAAATG-AGCGAGCGGACGAGCGGGCGGGCACTAC
131 GCCAACCAACGAAA-GAAACGAGCGGACGAGCGGGCGGGCACTAC
* * * * *
18330266 GCCGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATTTG-TCGGGTCCCCCTTTGCATGCTGCCAA
1 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTCGATCGGGTCCCCCTCTACATGCTGCCAA
* ** *
18330330 TCCTGCTGCCGCAACCC-CTGGTCTGGTCTGATCTGATCATAGACTGGGAATGAACTCCGTATGC
66 TCCTGCTGCCGCAACCCTC-GGTCTAGTCTGATC--AT-ATAGACCAGAAATGAACTCCGTATGC
* * * *
18330394 CTAAGCCAACCGACGAAAGAAACGGGCTGACGAGCGGGCTGGCACTAC
127 CTAAGCCAACCAACGAAAGAAACGAGCGGACGAGCGGGCGGGCACTAC
* * * *
18330442 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA-TCGATAGGGT
1 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTCGATCGGGT
18330486 GGTAGGTGGG
Statistics
Matches: 183, Mismatches: 28, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
170 1 0.01
171 81 0.44
172 2 0.01
174 1 0.01
175 3 0.02
176 95 0.52
ACGTcount: A:0.21, C:0.28, G:0.33, T:0.17
Consensus pattern (174 bp):
GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTCGATCGGGTCCCCCTCTACATGCTGCCAA
TCCTGCTGCCGCAACCCTCGGTCTAGTCTGATCATATAGACCAGAAATGAACTCCGTATGCCTAA
GCCAACCAACGAAAGAAACGAGCGGACGAGCGGGCGGGCACTAC
Found at i:18331112 original size:26 final size:26
Alignment explanation
Indices: 18331083--18331135 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18331073 CTGGTCCGAT
18331083 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18331109 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18331135 C
1 C
18331136 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18332037 original size:26 final size:26
Alignment explanation
Indices: 18331986--18332038 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18331976 CCAGTCCAAT
*
18331986 CTTAGACTAGGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
18332012 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18332038 C
1 C
18332039 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18332332 original size:903 final size:901
Alignment explanation
Indices: 18330247--18349678 Score: 11168
Period size: 900 Copynumber: 21.5 Consensus size: 901
18330237 GAGCGAGCGG
* * * * * *
18330247 ACGAGCGGGCGGGCACT-ACGCCGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATTTG-TCGGGT
1 ACGAGCGTGCGGGCGCTCA-GCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGA-TCGATCGGGT
* * * * *
18330310 CCCCCTTTGCATGCTGCCAATCCTGCTGCCGCAACCCCTGGTCTGGTCTGATCTGATCATAGACT
64 CCCCCTCTACATGCTGCCAATCCTGCTGCCGCAACCCTTGATCTGGTC----C-GATCTTAGACT
* * * * * *
18330375 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAAACGGGCTGACGAGCGGGCTGGCAC
124 GGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACG-AGCAGGCGGGCGGGCGGGC-GGCAC
18330439 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
187 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
18330504 CATCTTCATATTTCTACGTGCCAATGCCATTTTTATCGCTTGTAAATTCATACAATGGTCCCTTA
252 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
18330569 AGCCTTCATGTGAAGTTTCATGGCAAAACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
317 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTT
* * *
18330634 TTGTGGTTC-AGGAATTTTTAAAATTTTTTCGGAAGGAGTTTTGCCCCCAAACTTGGTAGACGTG
382 TTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
18330698 ATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTCACCTAAAAACTCGAAGTGTACAAGATTTT
446 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* *
18330763 GCGACCATTTGAAAAACGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
511 GTGACCATTTGAAAAA-GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAA
* *
18330828 AATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTC-AGGTTTGATGAGGGGTAGGGGGCCAATAT
575 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
18330892 AAGGGCCAAGTACTAGCACCCATCGCACATCATGTG-G-GCACCCCCTCGGCCCCCCCGATCATC
640 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATC
* * * *
18330955 GGAACCCCAATGCCGCCGATCAGGTTCTCTGGTGATGCTCTGGCGATGGTGCCCCGACGAAGAAA
705 GGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTC-CGAGATGGTGCCCCGACGAAGAAA
* * * * *
18331020 AATGCGACACCAGCACATGCCCTAGCCCAGCATGTGCTACGGTAACCCTCGGTCTGGTCCGATCT
769 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCT
* *
18331085 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAA
834 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
18331150 GAA
899 GAA
* * * * * * * * * * * *
18331153 ATGAGCTTACGGGTGCTCAGTCGGCCAGAGAGGTGAGATGCACAAGCCGAGGATCGAACGGGTCC
1 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCC
* ** * * * * * *
18331218 CCCTCTACGTGCTATCGATCCTGCTGTCGCAA-CCTTCAGTCCGGTCTGATCTTAGAATGGGAAT
66 CCCTCTACATGCTGCCAATCCTGCTGCCGCAACCCTTGA-TCTGGTCCGATCTTAGACTGGGAAT
* ** * * * *
18331282 GAACTCCGTATGCCTAAGCCAATTGACGAAACGAACGGGCTGGCGGGCGGGCGGGGACTACGCCG
130 GAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGC-GGCACTACGCCG
* * *
18331347 GCCAGAGAGACGTGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATTTTC
194 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
18331412 ATATTTCTGTGTGCCAATGCCCTTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTC
259 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* ** * * ***
18331477 ACGTGAAGTTTCATTTCAAGACAACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTAAAGGT
324 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGT
* * * * * ** *
18331542 TCTAGATTTTTTAAAATTTTTTCAGAAGGGGTTTTGTCCTCAAACTTGGTAGTTGCGATCCTTGT
389 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
*
18331607 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCAT
454 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
18331672 TTGAAAGAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAA
519 TTGAAA-AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAA
* *
18331737 ATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
583 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
** * * * *
18331802 AGTATGAGCACCCATCACACATCATGTACGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCC
648 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAACCCC
* * *
18331867 AAT-CTCGCCGGTCAGGTTCTCCGGCGACGCTCCGAGATGGTG-CCCGAACAAAGAAAAATGCGG
713 AATGC-CGCCGATCAGGTTCTCCGGCGATGCTCCGAGATGGTGCCCCG-ACGAAGAAAAATGCGG
* * * * * *
18331930 CACCAGGACATGCCCGAGCCCAGCATGTGTTGCCGCAACCCTCGGTCCAGTCCAATCTTAGACTA
776 CACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * *
18331995 GGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGCA
841 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * **
18332056 ACGAGCGTGCGGGCTCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATTAGGTCC
1 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCC
* * * * * *
18332121 CCCTATGCGTGCTGCCAATCTTGCTGCCGCAACCCTTGATCTGGTCCGATCTTAGATTGGGAATA
66 CCCTCTACATGCTGCCAATCCTGCTGCCGCAACCCTTGATCTGGTCCGATCTTAGACTGGGAATG
* * *
18332186 AACGTCGCATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGACACTACGTCGG
131 AACTTCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCGG-CACTACGCCGG
* * *
18332251 CCAGAGAGAAGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCATCA
195 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
18332316 TATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
260 TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * * *
18332381 CGTGAAGTTTCATGGCAAGACGACTTGTTTTTTTTTTTTCATGATTTTTGAAACTTTTTGCGGTT
325 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTT
* *
18332446 CGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
390 CGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * ** * * *
18332511 TTTTT-TTGGCTTGCATAAAAAAGGTCAGCTAAAAACTCGAAGGGTACAAGTTTTTGTGACAATT
455 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* *
18332575 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAA
520 TG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAA
* *
18332640 TGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAA
584 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * * *
18332705 GTGCCAGCACCCATCGCACATCATGTGTGCAAATCCTCCCCGG-CCCCCCGATCACCGGAACCCC
649 GTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCCCGATCATCGGAACCCC
* * * * * *
18332769 AATGCCGTCGGTCAGGTGCTCTGGCGATGCTCCCGCGATGGTGCCCCGACGAAGAAAAATGCAGC
713 AATGCCGCCGATCAGGTTCTCCGGCGATGCT-CCGAGATGGTGCCCCGACGAAGAAAAATGCGGC
* * ** * *
18332834 ACCAGCACATGCTCGAGCCCAGTATGTGCTGTCGTAACCCTCTGTCCGGTCCGA---T---C---
777 ACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
* *
18332890 --AT--A----G-A--C-T--A---GGAATGAACTCTGTATGCCTAAGACAACCCACGAA
842 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * ** ** * *
18332933 ACGAGCGTGCAGGCGTTTAGCTAGCCAGAAAGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCC
1 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCC
* * * * * ** * * **** *
18332998 CCCTCTACGTGCTGTCGATCCTACTACCATAACCCTCGGT-TCGAAATGATCATAGACTGGGAAT
66 CCCTCTACATGCTGCCAATCCTGCTGCCGCAACCCTTGATCT-GGTCCGATCTTAGACTGGGAAT
* * * *
18333062 GAACTTCGTATGTCTAAGCCAACCGAAGAAACGAGC-GGACGGGCGGAC--G-GGCACTATGCCG
130 GAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCAGG-CGGGCGGGCGGGCGGCACTACGCCG
* * * * * *
18333123 ACCAGAGAGATGGGATGCGTAAGCCGTGGATTGATAGGGTGGTTGGTGGCTTTAGGCACATCTTC
194 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
** * *
18333188 ATATTTCTATGTGCCAATGGCA-TTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTC
259 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
18333252 ATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGGGGT
324 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGT
* *
18333317 TC-AGGATTTTTTGAAATTTTTTCGGAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
389 TCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
18333381 TATTTTTGTT-G---G--C------A-T--G---------C-------ACAAGATTTTGTGACCA
453 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
18333415 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCA
518 TTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCA
* * *
18333480 AATGCTCTTTAAGCGGGTGTGAGTTTTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCC
582 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
18333545 AAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCTAGG-CCCCGCGAT--TGCAGGAA
647 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGCCCCCCCGATCAT-C-GGAA
* * * * *
18333607 CCCTAATG-CGTCGGTCAGGTTCT-C--CGA-----C--GATGGTGCCCCGATGAAGAAAAATAC
709 CCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGAGATGGTGCCCCGACGAAGAAAAATGC
* * * * *
18333661 GGCACCAGCGCATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGATTCGGTCCGATCTTAGAC
774 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGAC
*
18333726 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
839 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * *
18333789 ACGAGCGTGCGGGCGCTCAGTCGGCCAGAGAGGTGGGATGCACAAG-TCGGGGATCGGTCGGGTC
1 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCT-GGGGATCGATCGGGTC
* * * * * * *
18333853 CTCCTCCACATGTTGCCGATCCTACTGCCGCAACCCTTGATCCGGTTCGATCTTAGACTGGGAAT
65 CCCCTCTACATGCTGCCAATCCTGCTGCCGCAACCCTTGATCTGGTCCGATCTTAGACTGGGAAT
* * *
18333918 GAATTTCGTATGCCTATGCCAACCGACGAAACGAGCGGGCGGAG-GGGC--G-GGCACTACGCCG
130 GAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGG-GCGGGCGGGCGGCACTACGCCG
* * *
18333979 GCTAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTC
194 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * * *
18334044 ATTTTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTACGCCTTC
259 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * * *
18334109 ACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTCCATGATTTTCGAAAATTTTTGAGGT
324 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGT
* * * ** * *
18334174 TCGGGATTTTTTAGAATTTTTTCAGAATAATTTTTGGCCCCAAACATGGTAGACGTGATCCTTGT
389 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
*
18334239 ATTTTTGTTGGCATGGACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
454 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
18334304 TTGAAAAAAGTGT-CCCATTTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCA
519 TTG-AAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCA
* *
18334368 AATGCTCTTTAAGCGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGCCAATATAAGGGCC
582 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
18334433 AAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGGTCCCCCCGATCACCGGAACCC
647 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAACCC
* * * * *
18334498 CAATGCCGCCGGTTAGGTTCTCCGACAATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCGG
712 CAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGA-GATGGTGCCCCGACGAAGAAAAATGCGG
* * * ** * * * *
18334563 CACTAGCACATGCCCAAGCCCAGCATGTGCTACCGTAACCCTTTGTCTGATTCGATCTTAGATTG
776 CACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * *
18334628 GGAGTGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTACGTCAACACACGAA
841 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * ** * *
18334689 ATGAGCGTGCGGGCGCTCAGCCTGCCAGAGAGGCGGGATGCATAAG-TCGGGGATCGACCGGGTA
1 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCT-GGGGATCGATCGGGTC
* * * * ** ** * *
18334753 CCCCTCCACATGTTGCCGATCTTGCTGCTACAACTTTTGGTCCGGTCCGATCTTAGACTGGGAAT
65 CCCCTCTACATGCTGCCAATCCTGCTGCCGCAACCCTTGATCTGGTCCGATCTTAGACTGGGAAT
* * * * * * *
18334818 GAA-TTCTGTATGCGTAAGCCAATCGACAAAACGAGC-GG-GCGAGGG-GGGCGGGCATTACGTC
130 GAACTTC-GTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGC-GGCACTACGCC
* * **
18334879 GGCCAGAGAGACGGGATGTGCAAGCCGTGGATCAATAGGGTGGTACATGGGTTTAGGCACATCTT
193 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
18334944 CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCCTTAGGCCTT
258 CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * * *
18335009 CGTGTGAAGTTTCAAGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGG
323 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGG
* * * * * *
18335074 TTCGGGACTTTTAAAAATTTTTTCGGAAGGATTTTTGGTCCCAAACTTGGTAGACGTGATCCTTT
388 TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* *
18335139 TATTTTTGTTGGGATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCG
453 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
18335203 TTTGAAAAATGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
518 TTTGAAAAA-GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCA
* * * *
18335268 AATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAAGAGGCCAATATAATGGCC
582 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * *
18335333 AAGCACCAGCACCTATCGCACATCATGTGCGCACACCCCGTCCGGCCCCTCTGATCATCGGAACC
647 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCGGCCCCCCCGATCATCGGAACC
** * * *
18335398 CCAATGCCATCGATCAGGTTCTCCGACAATGCTCCGGCGATGGTG-CCC-ATCGAAGAAAAATGC
711 CCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCC-GAGATGGTGCCCCGA-CGAAGAAAAATGC
* * *
18335461 GGCACCAGCACATGCCCAAGCCCAGCATGTGC-AGCTGTAACCCT---T---G---G----T---
774 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTA-CCGCAACCCTCGGTCCGGTCCGATCTTAGA
* * *
18335509 CT-GG--T----T-TG-AT-CTTAGACTGGGAATGAACTCCGTATGCATATGTCAACCCACGAA
838 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * *
18335563 ACGAGCGCGCGGGCGCTCAGCCGGCCAGAGGGGAGGGATGCACAAGCT-GGGATCGGTCGGGTCG
1 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCC
* * * * *
18335627 CCCTCTGCATGCTACCAATCCTGCTGCCGCAGCCCTTGATCTGGTCCAATTTTAGACTGGGAATG
66 CCCTCTACATGCTGCCAATCCTGCTGCCGCAACCCTTGATCTGGTCCGATCTTAGACTGGGAATG
* * * *
18335692 AACTCCGTATGCCTAAGCCAACCGACGAAACGAG-TGGACGGGCGGGC---AGGCACTATGCCGG
131 AACTTCGTATGCCTAAGCCAACCGACGAAACGAGCAGG-CGGGCGGGCGGGCGGCACTACGCCGG
* * * * *
18335753 CCAGAGAGGCGGGTTGCGCAAGCCGTGGATCGATAGGGTGTTTGGTGCGTTTAGG-ACATCTTCA
195 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * *
18335817 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCG
260 TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * * ** ** *
18335882 TGTGAGGTATCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTCACGATT
325 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTT
* * ** *
18335947 TGAGATTTTTAAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAAC----TAGACATGATCCTTGTA
390 CGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
*
18336008 TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
455 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* *
18336073 TGAAAATAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGT-AAATCTCAAA
520 TGAAAA-AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAA
* ** * * *
18336137 TGCTCATTAAGGAAGAGTGAGTTCTCCAGTTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
584 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * *
18336202 GCACCAGCACCCATCGCACATCATGTGTGCACAGCCCCCCC-GACCCCCCGATCGTCGGAACCCC
649 GTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCCCGATCATCGGAACCCC
* * ** * * *** * *
18336266 AATACCGCCGATCAGGTTCTCTGATGATGCTTCGACGATAGTGCCCCGGTAAAGAAAAATACGGT
713 AATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGA-GATGGTGCCCCGACGAAGAAAAATGCGGC
* * *
18336331 ACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCTGGTCTGATCTTAGACTGG
777 ACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
* * *
18336396 GAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAA
842 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * * ** * *
18336456 ACGAGTGTGCCGACACTCAGTCTACCAGAGGGGCGGGATGCGCAAGCCGAGGATC-AGTCGGGTC
1 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGA-TCGGGTC
* * * ** * * * * *
18336520 CCCCTCTACGTGCTGCTAATCTTGCTATCGCAACCGTCAGTTC-GGTCCGATCTTATATTGGGAA
65 CCCCTCTACATGCTGCCAATCCTGCTGCCGCAACCCT-TGATCTGGTCCGATCTTAGACTGGGAA
* * * * * * *
18336584 TGAACTTCGTATGCCTAAGCCAAACGACGAAATGAGCGGGCGAGCGGGC-GGC--CAGTATGTCG
129 TGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGCACTACGCCG
*
18336646 ACC----AGA---GA---G---G-CG-GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
194 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
18336696 ATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
259 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
18336761 GTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGT
324 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGT
* * *
18336826 TCGAGATTTTTT-AAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGCCGTGATCCTTGT
389 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
18336890 ATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
454 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * *
18336954 TTGAAAAAATGGTACCCATTTTAGACATTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAA
519 TTGAAAAAGT-GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAA
** * * *
18337019 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCAATGAGGGATAAGTGGCTAATATAAGGGCCA
583 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * * * * *
18337084 AGAACCAGCACCCATCGCACATCATGTACGCACACCCCCTCGGGCCCCCGGATCGTCGAAACCTC
648 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAACCCC
* * * * **
18337149 AATGCTGTCGATCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGTCGAAGAAAAATGTAGC
713 AATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGA-GATGGTGCCCCGACGAAGAAAAATGCGGC
* * ** * *
18337214 ACCAGTACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCAATCTGGTCTGATCTTAGACTGG
777 ACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
* * *
18337279 GAATGAACTCCGTATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGTA
842 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * **
18337339 ACGAGCGTGCAGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTTGGGGATTGGCCGGGTCC
1 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCC
* ** * * * * * * * *
18337404 CCTTCTGTATGCTGCCGATCCTGTTGCCACAGCCCTCGATCCGATCCGATCTTAGACTGTGAATG
66 CCCTCTACATGCTGCCAATCCTGCTGCCGCAACCCTTGATCTGGTCCGATCTTAGACTGGGAATG
* * ** ** * * *
18337469 AACTCCGTATGCCT-AGATCAAGTTCTCCGACGATGC-TCCTAGGATGGTGCCCCGTCGAAGAAA
131 AACTTCGTATGCCTAAG-CCAA-----CCGACGAAACGAGC-AGG-CGG-G--CGGGCG--G---
* * * * * * * * ** *
18337532 AATACGGCACCA-GCACATGCCCGAGCCCAGCATGTGCTGTCGCAA-CCCTCGG-TCTGATTCGA
180 ---GCGGCACTACGC-C-GGCCAGAG---AG-ACGGGATG-CGCAAGCCGT-GGATC-GATAGGG
** * * * * * ** * *** *
18337594 TCTTAGACTGGG--AATG-A-A-CTCCATATGCTT-AGAC-TGGGAATG-AACTCCGTATGCCTA
233 TGGTAG-GTGGGTTTAGGCACATCTTCATAT--TTCTG-CGTGCCAATGCCA-TTTTTATGGCT-
* * ** * * * * *** * *
18337651 AGTCAACCCACGA-AATGAG--CATGCAGGCAC-TCA-GTCGGCCAGAGGGGC-TGG-ATGCACA
292 TGTAAATTCA-TACAATG-GTCCCT-TAAGC-CTTCATGT--G--A-AGTTTCATGGCAAG-ACG
* *** * * * * * * * * * ** * ** * **
18337709 AGTCAGGGATCGA-----CAGGGTCATTC---TCTGTGTGCTG-CCGATCCTGCTGCTACAA-CC
347 ACTC-GTTTTCTATTTTTCATGAT-TTTCGAAACTTTTTGCGGTTCGA-GAT-TTTTTAAAATTT
* * * * * * * *** ** * *
18337764 CTT------G-G-TCTGG-TCCGATCTTAGGCTGGGA-ATGAACTCC--GTATGCCT-AAGCCAA
408 TTTCGGAAGGAGTTTTGGCCCCAAACTT-GG-T-AGACGTG-A-TCCTTGTATTTTTGTTGGCAT
* * * * *** ** * * * ** *** * *
18337816 CCGACGAAACAA-GCGAGCGGGCAGGCACCACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
468 GC-ACAAAAAAATTC-AGC-TAAAAACTCGAAGT-GTACA-AGA----TTTTGTG--A-CCAT--
* * ** ***** * * ** *
18337880 ATCGATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
519 -TTGAAAAAGT-GT--CCCCATTTCAG-ACA-CTTTA-ATGGCTAC-TGGC-A-G-CA-----A-
* * * * * * ***
18337945 GGCTTGTAAATTCAT-ATAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGATGACTCG
567 -ACCTATAAAATC-TCA-AATGCT-CTTTAAG--GGGGTGTG-AG-TTC-T--C--GA-G----G
* ***** **** * * * * * * *** ** *** *
18338009 TTTTTATTTTTCACTATTTTTG-AAACTTTTTACGGTTCGAGATTTTTTAAAATCTTTTCG-AAA
614 -TTTGATGAGGGA-TA-GGGGGCCAA---TATAAGG-GCCA-A-GTACCAGCA-CCCATCGCACA
** * * ** ** ******* * * * **** *****
18338072 GGAGTTTTCGC-C-CCAAACTTGGTAGATGTGATCCTTGTATTTTTTTGGC-ATGCATAAAAAAA
669 TCA-TGTGCGCACACC-CCCCCGGCCCCCCCGATCATCGGA-----ACCCCAATGC---CGCCGA
* * ** * * * * *** * * * *
18338134 TCCAGCTAAAAACT-CGAAG-TG-TACAAGATTTTGTG-ACC-A-TTTGAAAAATGTGTCCCCAT
724 T-CAGGT----TCTCCGGCGATGCTCCGAGA--TGGTGCCCCGACGAAGAAAAATGCGGCACCAG
** ** * * * **** * **
18338193 TTCA-GACACTTTAATGGCTA--ATG-G-TA--GCAAACCT--GTAAAATCTCAACTACTCTTTA
782 CACATG-C-C--CGA-GCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTC-CGA-T-CT-TAGA
** * * * * * * **** * *
18338249 -TGGGGGTTTG-AGTTC-TCAAGGTTTGA-TGAGGGATAGGGGGCCAATATAAGGGCC-AAGCAC
838 CT--GGGAATGAACTCCGT-ATGCTTAGACTG-GGAAT-GAACTCC-GTAT----GCCTAAG--T
18338309 CAGCACCCATCGCACA
891 CA--ACCCA-CG-A-A
* * *** *** * * ** * ** * * ** * *
18338325 TCATGTGCACACACCCCCTCGGCCCCCCTGATCGTC-GAAACCCCAATGCCGTCGGTCAGGTTCT
1 --ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA-G-C-T-GG---GG--AT
* ** * *
18338389 CCG-GCGATGGTGCCCCGACATAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
55 -CGATCG--GGT-CCCC--C-T--CTACATGCTG---C--CA-AT---------C--C---TGCT
* * * * * * **
18338453 GTCGCAACCATGGATCCT-GTCTGATCTTAGACTGGGAATGAAC-TCTATATGCTTAGACTGGGA
91 GCCGCAACCCTTGAT-CTGGTCCGATCTTAGACTGGGAATGAACTTC-GTATGCCTA-A--GCCA
** ** * ** ** ** * * * *
18338516 ATGGACTCTGTATGCCTAAGTCAACCCATGAAACTAGTGTGCGAGCAC-CCAGCCGGCCAGAAAG
151 ACCGA--C-G-A-AAC-GAG-C-AGGC--G-GGCGGGCGGGCG-GCACTAC-GCCGGCCAGAGAG
** * * * * * **** ** *
18338580 GTGAGATACGTAAGCCGAGGATC---A--GT--CAGGTCCCCTTCTG--CATGCTTCCA-A-TCC
203 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT-CTT-CATATTTC
* * *** ** * ** * ** * *
18338634 TGC-TGCCACA-ACCCTCAATCCGG-TCCG-ATCTT-AGACTGGGAATGAACTCCGTATGCCTAA
266 TGCGTGCCA-ATGCCATTTTTATGGCT-TGTAAATTCATAC----AATGGTC-CCTTAAGCCT--
* * ** ** ** * *** * ****
18338694 GCCAACCGATGAAACGGGTGGGCGGGCGGGCGGGCACTACGTCGGTAGAGAGGCGGGA-AGCGCA
322 -TC-A-TG-TG-AA---GT-TTC---ATGGCAAG-ACGAC-TC-GT----TTTC--TATTTTTCA
* * ** ** ** * ** * * *
18338758 AGCCGTGGATCGATAGGGTGGTAGGTG-GGTT-TAGGCACATCTTAATATTTCTATGT-GCCAAT
366 TG--AT-TTTCGA-A-ACT--T-TTTGCGGTTCGA-G-ATTTTTTAAAATTT-T-T-TCG-GAA-
* * *** ** * * * **
18338820 GCCATTATTATGGCTTGTAAA-TTCATACA-ATGGTCCCTTAAGCCTTTGTGTGAAGTTTCATGG
416 G-GAGT-TT-TGGC-CCCAAACTTGGTAGACGTGAT-CCTT--GTATTT-T-T---G--T--TGG
* *** *** * ** **** * * * * **
18338883 CAAGACGACTTGTTTTCTATTTTTCATGATTTTGGAAACTTTTTGCGGTTCGAGATTTT-TTAAA
465 CATG-C-AC------AAAAAAATTCA-G---CTAAAAACTCGAAG-TGTACAAGATTTTGTGACC
** * *** **
18338947 ATTTTTTTGGAAGGAGTTTTGGCCCCAAAGTTGGT-AGACATGATCCTTGT-ATTTTTGTTGGCA
517 A----TTT-GAAAAAG---TGTCCCC--A-TT--TCAGAC---A--CTT-TAATGGCTACTGGCA
* ** * * *** **
18339010 TGCACAA---A-AAAATTCAGCTAAAAACTC--GAA--GTGTACAAGATTCTGCGACCATTTGA-
563 -GCA-AACCTATAAAA-TC-TC-AAATGCTCTTTAAGGGGGTGTGAG-TTCT-CGA-GGTTTGAT
* * * ** * * **** * *
18339066 -A--AAAAGTGTCCCCAT-T-----TCAA--A-CA-CTTTAATGGC-TA-C-TG-GCAGCA-A--
620 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-GCACACC
* * **** * * * * *** ** * ** * * * *
18339111 --ACCTG----TAAAATC-TC-AAATGCTC-TTTAAGGGGGTTTGAGTTCT-TGAG-GTTAGATG
684 CCCCCGGCCCCCCCGATCATCGGAA-CCCCAATGCCGCCGATCAG-GTTCTCCG-GCGAT-GCTC
* * * * * * * * *
18339165 AGGGATAGG-G-GCC--C-AA-TATAA-G-GGC-CAAGCACCA-GCACCCATCGCACATCATGTG
745 CGAGAT-GGTGCCCCGACGAAGAAAAATGCGGCACCAGCA-CATGC-CCGA--GCCCAGCATGTG
* * * ** * *** * ** *
18339220 C--GCACACCCCTCGG-CC-ACCCGATCGTTGGAAC-CCCAATG-CCGTCAATCA-GGTT---CT
805 CTACCGCAACCCTCGGTCCGGTCCGATC-TTAG-ACTGGGAATGAAC-TCCGT-ATGCTTAGACT
** * * * * ** * * *
18339275 CCG-ATGATGCCCCGGCGATG-GTGCCG-CGA-CAAAGAA
866 GGGAATGA-ACTCC-G-TATGCCT-AAGTCAACCCACGAA
* * **** * * * * * * * *
18339311 AAGTA-CG-ACACTAGCACATGTCCGATCCTAGCATGTGC-TG-T-CACAACCCT-CGG-TC---
1 ACG-AGCGTGCGGGCGCTCA-G-CCG-GCC-AG-AGGGGCGGGATGCGCAA-GCTGGGGATCGAT
*** * ** *** ** ** * ** * *
18339366 C-GGT-CTGATCT-TA-GACTGGGAAT-AAACT-CCTTATGCC-TAAGTCAAG-CC-A-C-GAAA
59 CGGGTCCCCCTCTACATG-CTGCCAATCCTGCTGCCGCAACCCTTGA-TCTGGTCCGATCTTAGA
* * * * * * ** * * * * *
18339420 C-GAGCGTACGAGC-GC-TCA-GCC--GGCTAGAGGGGCGAGATGCACAAGCCGG-GGATCGGTC
122 CTG-G-GAATGAACTTCGT-ATGCCTAAGCCA-ACCGACGA-A---ACGAGCAGGCGG-GCGGGC
** * * * * ** * * * * * ** * **
18339478 GGGTCCCCCACTGCGTGCTGCC--A-A-TCCTGCTGCCGCAA-CCCTCAGTTCGGTCTGATCTTA
178 GGG--CGGCACTACG-CCGGCCAGAGAGACGGGATG-CGCAAGCCGT-GGATCGATAGGGTGGTA
* * * * * ** ** * * * ****** **
18339538 GATTGGG--AATGAAC-TCCGTATGCCTAAGTCAACCG-ACGAAATGGGCAGGCGGGTGGGCGGG
238 G-GTGGGTTTAGGCACAT-C-T-T-CATATTTC-TGCGTGC-CAAT-GCCATTTTTAT-GGCTTG
* ** *** * * * * * ** * ****
18339599 CACAACGTCGGCCAAAGAGGCAGGATGCGTAAGTCGTGGATCGAT-AGAGTGGT-AGGTGGGTTT
294 --TAAATTCATACAATG-GTC-----CCTTAAG-CCTTCAT-G-TGA-AGT-TTCA--TGGCAAG
* * * **** ** * * * ** *
18339662 A-G-GTACATTTTCATATTTCTGCATGCCAAT-GCCATTTTTATG-GCTT-GTA-AATTCATACA
344 ACGACT-CGTTTTC-TATTT-TTCATGATTTTCGAAACTTTT-TGCGGTTCG-AGATTTTTTAAA
** ** ** ** * ****** * * * * * *
18339721 ATGGTCCCTTAA-GCCTTCGTGTG-AAGTTTCATGGCAAGAC--GACTCGTTTTCTATTT-TT--
404 ATTTTTTCGGAAGGAGTT-TTG-GCCCCAAACTTGG-TAGACGTGA-TCCTTGTATTTTTGTTGG
* **** * ** ***** * * * * ** * * **
18339779 CACG-ATTTTTGAAACTT-TTCT-CGGTTTGGGATTTTTTAAAATTTTTTGGAAGGATTT-----
465 CATGCA--CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT-G-ACCATTTGAAAA
* * * *** *
18339836 -TTGGCCCCAATCTTGGTAGACGTGATCCTTGT-ATTTTTATTGGCATGCACAA---A-AAAAT-
526 AGTGTCCCC-AT-TT--CAGAC---A--CTT-TAATGGCTACTGGCA-GCA-AACCTATAAAATC
*** *** ** * * ** ** *
18339894 TC--A-GCT-AAAAACTCGAAGT--GTACAT-GA-TTTTG-TGA-CCAT---TTG-CAA-AAAAT
579 TCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-
** * ** ** * * * ******* * **** *
18339944 GTCCCCA-TTTCAGACACTTAATGGC-TA-C-TG-GCAGCAAACCTATAAAATCTCAAATGCTCT
642 GGGCCAAGTACCAG-CAC-CCATCGCACATCATGTGC-GCACACC-CCCCCGGCCCCCCCGATC-
** ****** * * * * * * * *
18340004 TTAAGGGGGTGTGAGTTCTTAAGGTTC-TTCAAGTTCTCCGACGATGCTCCAACGATGGTGCCCC
702 --ATCGGAACCCCAATGC----CG-CCGATCAGGTTCTCCGGCGATGCTCCGA-GATGGTGCCCC
* * * *
18340068 -AGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATC
759 GA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTC
* * * * *
18340132 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGTGAATGAACTCGGTATGCCAA
823 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
18340197 AGTCAACCCACGAA
888 AGTCAACCCACGAA
* * * * * * * * * *
18340211 ATGTGAGTGCAGGCGCTCAGTCGGCCAGAGGGGCGGGATGTGAAAACCGGGGATCGGTCGGGTCC
1 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCC
*** * * ** * *
18340276 CCCTCTGTGTGCTACCGATCCTGCTGCCATAACCC-TCAGTCTGATCCGATCTTAGACTGGGAAT
66 CCCTCTACATGCTGCCAATCCTGCTGCCGCAACCCTTGA-TCTGGTCCGATCTTAGACTGGGAAT
* * * * * * *
18340340 GAACTCCATATGCCTAAGCCAACCGATGAAATGAGCGGGCGAGCGGGC--G-GGCACTATGCCGG
130 GAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGCACTACGCCGG
* * * * *
18340402 CCAAAGAGATGGGATGTGCAAACCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCA
195 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
*
18340467 TA-TT-T-C-TG-C-ATGCCA-----A-------TAAATTCATA-AATGGTCCCTTAAGCCTTCG
260 TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* **
18340513 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTAACGGTT
325 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTT
* * * *
18340578 C-AGGATTTTTTAAAATTTTTTTGAAAGGGGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGT
390 CGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * *
18340642 ATTTTTGTTGGCATGCAAAAAAAAAAAAAATCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGA
454 ATTTTTGTTGGCATGC----ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
18340707 CCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
515 CCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATC
*
18340772 TCAAATGCTCTTTAAGGGGGTGTGAGTTGTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
579 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * * * * *
18340837 GACAAGCACCAGCACCCATTGTACATCATGTGCACACA-CCCCCCGACCCCCTCGATC-GCTGGA
644 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATC-GGA
* * * * ** *
18340900 ACCGCAATGCCGCCGGTCAAGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAGT
708 ACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGA-GATGGTGCCCCGACGAAGAAAAAT
* * * ** * * *
18340965 GCGGCCCCAGCACATGCCCGAGCCCAACATGTACGGCCGCAACCCTTGGTCTGGTCTGATCTTAG
772 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAG
*
18341030 ACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTGTATGCTTAGACTGGGAATGAACG
837 ACTGGGAATGAACTCCGTATGCTTAGACT-GG---G-A-----ATG---A-AC------T---C-
*
18341095 CTGTATGTCTAAGTCAACCCACGAA
878 C-GTATGCCTAAGTCAACCCACGAA
* * * ** *
18341120 ACGAGCGTGCGGGCGCTGAGCCGGCCAGAGGGGCGGGATGTGTAAG-TCGGGGATCGGCCAGGTC
1 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCT-GGGGATCGATCGGGTC
* * * * * *
18341184 CCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCCG-TCTGGTCCAATCTTAGACTGGGAA
65 CCCCTCTACATGCTGCCAATCCTGCTGCCGCAACCCT-TGATCTGGTCCGATCTTAGACTGGGAA
* * * * **
18341248 TGAACTCCATATGCCTAAGCCAACCAACGAAAC--G-A-GTGGGCAAGC--G-GGCACTACGCCG
129 TGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGCACTACGCCG
*** * *
18341306 GCCAGAGAGACGGGATGCGCAAGTTATGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCATC
194 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
18341371 ATATTTTTGGGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
259 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * * * * *
18341436 GTGTGAAGTTTCACGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACTGC
324 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGT
* * * * * *
18341501 TCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTAGCCCCAAAATTGGCAGATGTGATCCTTGT
389 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* ** *
18341566 ATTTTTTTTCACATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCAT
454 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * *
18341631 TTGAAAAAGTATCCCCATTTCAGACACTTTAAAGGCTACTGACAGCAAACCTGTAAAATCTCAAA
519 TTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAA
* * * *
18341696 TGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGTCAA
584 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * ***
18341761 GCACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCTGATTGCCGGAACCCCA
649 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAACCCCA
* ** **
18341826 ATGCCGCCGATCAGGTTCTCCGGGGATGCTCTAACGATGGTGCCCCGACGAAGAAAAATATGGCA
714 ATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGA-GATGGTGCCCCGACGAAGAAAAATGCGGCA
* * * ** * * * *
18341891 CCAGCACATGCTCGAGCCTAGCATCTGCTGTCGTAACCCTCGGTCCAGTCTGATCTTAGACTAGG
778 CCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
* * *
18341956 AATGAACTCCGTATGCTTAGACAGGGAATGAGCTCCGTAAGCCTAAGTCAACCCACGAA
843 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * *
18342015 ACGAGCGTGCGGGCGTTCAGCCAGCCGGAGGGGCGGGATGTGCAAGCCGGGGATC-AGTCGGGT-
1 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGA-TCGGGTC
* * * * **
18342078 -CCC-C--C-T-CTG-C--T--TGCTGTCGTAACCCTGGTTCTGGTTTGATCTTAGACTGGGAAT
65 CCCCTCTACATGCTGCCAATCCTGCTGCCGCAACCCTTGATCTGGTCCGATCTTAGACTGGGAAT
* * * * *
18342132 CAA-TTCCGTATGCCTAAGCCAACCGATGAAATGAGC-GGACAGACGGGC--G-GGCACTACGCC
130 GAACTT-CGTATGCCTAAGCCAACCGACGAAACGAGCAGG-CGGGCGGGCGGGCGGCACTACGCC
* * **
18342192 GGCTAGAGAGACGGGATGCGCAAGCCGTGGAATCAATAGGGGTGGGTAGGTGGGTTTTACACACA
193 GGCCAGAGAGACGGGATGCGCAAGCCGTGG-ATCGATA-GGGT-GGTAGGTGGG-TTTAGGCACA
* ** *
18342257 TCTTTCTTATTTCTATGTTGCCAATGCCATCTTTTATGGGCTTGCAAATTCATAACAATGGTCCC
254 TC-TTCATATTTCTGCG-TGCCAATGCCAT-TTTTAT-GGCTTGTAAATTCAT-ACAATGGTCCC
* * * * * *
18342322 TGAA-CCCTCGTGTGAACTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
314 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAAC
* * *
18342386 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
379 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * ** *
18342451 TAATCCCTGTATTTTTGTTGGCATGTGCAAAAAAATTAAGCTAAAAACTCGAAGTGTACAAGATT
444 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
18342516 TTGTGACCATTTGAAAAAAGTGTCCCCATTGT-AGACACTTTAATGGGTACTGGCAGCAAACCTG
509 TTGTGACCATTTG-AAAAAGTGTCCCCATT-TCAGACACTTTAATGGCTACTGGCAGCAAACCTA
* *
18342580 TAAAATCTCAAATGCTATTTAAGGGGGTGTGTGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
572 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
18342645 TATAAGGGCCAAGCACCAGCACCCATTGCACATCATGTGCGCGCAACCCCCCCGGCCCCCCTGAT
637 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCCGGCCCCCCCGAT
* * * * * * *
18342710 CGTCGGAACCCCAACGCCGCCGGTCAGTTTCTCCAGCGATGGTCCG-GCAATGGTACCCCGACGA
701 CATCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGAG--ATGGTGCCCCGACGA
* ** *
18342774 AGAAAAATGCAGCACCAGCACATGCCCGAGCCTTGCATGTGC-AGCCGCAACCCTCAGTCCGGTC
764 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA-CCGCAACCCTCGGTCCGGTC
* *
18342838 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCATATGCCTAAGTCA
828 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
18342903 ACCCACGAA
893 ACCCACGAA
* * * *
18342912 ATGAGCCTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGAGGATCG-GCTGGGTC
1 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATC-GGGTC
* * * * * *
18342976 CACCTCT--A--C-G-------TGCTGCCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAAT
65 CCCCTCTACATGCTGCCAATCCTGCTGCCGCAACCCTTGATCTGGTCCGATCTTAGACTGGGAAT
* * *
18343029 GAACTCCATATGCCTAAGCCAACCGACGAAAC--G-A-GCGGACGGGC--G-GGCACTACGCCGG
130 GAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGCACTACGCCGG
** * *
18343087 TAAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCT
195 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * *
18343152 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTGAACCCTTCG
260 TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * *
18343217 TGTGAAATTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTT
325 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTT
* * * *
18343282 TGAGATTTTTT-AAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGATGTAATCCTTGTA
390 CGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* **
18343346 TTTTTTTTGGCATGTGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
455 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * *
18343411 TGAAAAAAGTGTCCCCATTGT-AGACACTTTAATGGCTATTGGCAGCAAACTTGTAAAATCTCAA
520 TG-AAAAAGTGTCCCCATT-TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAA
* * *
18343475 ATGCTCTTTAAGGGGGTGTGTGTTCTGGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCA
583 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * *
18343540 AGCACCAGCACCCATTGCACATCATGTGCGCGCACCCCCCCGGCCCCCCTGATCGTCGGAACCCC
648 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAACCCC
* * * ** * *
18343605 AACGCCGCCGGTCAGTTTCTCCGGTAATGCTCCGACGATGGTGCCTCGACGAAGAAAAATACGGC
713 AATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGA-GATGGTGCCCCGACGAAGAAAAATGCGGC
** * *
18343670 ACCAGCACATGCCCGAGCCTTGCATGTGC-AGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTG
777 ACCAGCACATGCCCGAGCCCAGCATGTGCTA-CCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * *
18343734 GGAATGAACTCCGCATGCTTAGAATGGGAATGAACTCCATATGCCTAAGTCAACCCACGAA
841 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * *
18343795 ATGAGCGTGCGGGCGCTGAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-GCTGGGT-
1 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATC-GGGTC
* * * * *
18343858 CCCC-CT-C-TGC-G-------TGCTGTCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAAT
65 CCCCTCTACATGCTGCCAATCCTGCTGCCGCAACCCTTGATCTGGTCCGATCTTAGACTGGGAAT
* * * * *** * *
18343912 GAACTCCATATGCCTAAGCCAACCGATGAAACGAGC-GGATGGGCATAC---AGGCACTACGTCG
130 GAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCAGG-CGGGCGGGCGGGCGGCACTACGCCG
* * * *
18343973 GCAATAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
194 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
18344038 ATATTTCTGCATGCCAATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
259 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
18344103 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGT
324 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGT
* * * * * * *
18344168 TCGGGATTTTTTAAAATTTTTTTGGAAGCAGTTTT-ACCCCAAACTTAG-ATGACGTAATCCCTG
389 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA-GACGTGATCCTTG
* * * * *
18344231 TATTTTTGTTGGCATGTACAAAAAAATTTAGTTAAAAACTCAAAGTGTACAAGATTTTGTGACTA
453 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
18344296 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCA
518 TTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCA
* *
18344361 AATGCTCTTTAAGGGGGTGTGTGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
582 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * *
18344426 AAGCACCAGCACCCATTGCACATCATGTGCGCGCACCCCCCCGGCCCCCCTGATCGTCGGAACCC
647 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAACCC
* * * * * ** * **
18344491 CAACGTCGCCGGTCAGTTTTTCCGGTAATGCTCCGACGATGGTGCCTCGACGAAGAAAAATATGG
712 CAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGA-GATGGTGCCCCGACGAAGAAAAATGCGG
** * *
18344556 CACCAGCACATGCCCGAGCCTTGCATGTGC-AGTCGCAACCCTCAGTCCGGTCCGATCTTAGACT
776 CACCAGCACATGCCCGAGCCCAGCATGTGCTA-CCGCAACCCTCGGTCCGGTCCGATCTTAGACT
* * *
18344620 GGGAATGAACTCCGCATGCTTAGAATGGGAATGAACTCCATATGCCTAAGTCAACCCACGAA
840 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * *
18344682 ATGAGCGTGCGGGCGCTGAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG--CTGGT--
1 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCC
* * * *
18344743 CCC-CT-C-TG-TG-------TGCTGCCGCAACCCTCGGTCCGGTCCAAATCTTAGACTGGGAAT
66 CCCTCTACATGCTGCCAATCCTGCTGCCGCAACCCTTGATCTGGTCC-GATCTTAGACTGGGAAT
* * * * *** * *
18344797 GAACTGCATATGCCTAA--CAACCGATGAAACGAGC-GACGGGCAATAC---AGGCACTACGTCG
130 GAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGC-GGGCGGGCGGCACTACGCCG
* * * * *
18344856 GCAATAGAGGCGGGATACGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
194 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
18344921 ATATTTCTGCATGCCAATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
259 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
18344986 GTGTGAAGTTTCAT-GCAAGACGACTCGTTTTCTA-TTTTCACT-ATTTTTTGAAACTTTTTACG
324 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGA-TTTTCGAAACTTTTTGCG
* * * * *
18345048 GTTCGGGAATTTTTT-AAATTTTTT-GGAAGCAGTTTT-ACCCCAAACTTAG-ATGACGTAATCC
387 GTTCGAG-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA-GACGTGATCC
* * * *
18345109 CTGTATTTTTGTTGGCATGTACAAAAAAATTCAGTTAAAAACTCAAAGTGTACAAGATTTTGTGA
450 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
18345174 CTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTATTGGCTACTGGCAGCAAACCTGTAAAATC
515 CCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATC
* * * *
18345239 TGAAATGCTCTTTAAGGGGATGTGAGTTCTCCAGGTTCGATGAGGGATAGGGGGCCAATATAAGG
579 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * * *
18345304 TCCAAGCACCAGCACCCAACACACATCATGTGCGCACACCCCCCCGGCACCCCCGATCGTCGGAA
644 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAA
* * * * * * *
18345369 CCCCAATGCCGCAGGTCAGGTTCTCCGACAATGCTCTGACGATGGTGTCCCGACGAAGAAAAATA
709 CCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGA-GATGGTGCCCCGACGAAGAAAAATG
* * * *
18345434 CGGCACCAGCACATGCCTGACCCCAGCATGTGCTGCTGCAA-CC-C--T-C-G---G-TC-----
773 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGA
18345484 C-------G-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
838 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * *** *
18345537 ACGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGCGAGATGCGCAAGCCAAGGATCGACCGGGTCC
1 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCC
** * * * * *
18345602 CCCTCTATGTGCTGTCGAA-CTTACAGCCGCAACCCTT-AGTCTGGTCCAATCTTAGACTGGGAA
66 CCCTCTACATGCTG-CCAATCCTGCTGCCGCAACCCTTGA-TCTGGTCCGATCTTAGACTGGGAA
* * * * * *
18345665 TGAACTCCGAATGCCTAAGCCAACTGACGAAAC-A--A-GCGGACGGGCGGGCAAGCACTACGTC
129 TGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGC-GGCACTACGCC
* * * * * * *
18345726 GCCCAGAAAGGCGGGATGCGCAAGCCGTGGATCAATAGGGTGGTACGTGGGTTTCGACACATCTT
193 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
18345791 CATATTTATGTGTGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTT
258 CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * * *
18345856 CGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTGGAGG
323 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGG
* * * * *
18345921 TTCAAGATTTTTTAAACTTTTTTTGGAAGGAGTTTTGGCCCCAAGCTTGGTAGATGTGATCCTTG
388 TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * *
18345986 TATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACACAAAGTGTACAAGATTTTGTGACCA
453 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
18346051 TTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
518 TTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCA
* * * *
18346116 AATTCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGATGGATAAGGGGCCAATATAAGGGCC
582 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * *
18346181 AAGCACCAGCACCCATCGCACATCATGTGGGCACACCCCCCC-GACCCCCCGATCATCGAAACCC
647 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAACCC
* * * * *
18346245 CAATGGCACC-AGTCAAGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAAGAAGAAAAATACG
712 CAATGCCGCCGA-TCAGGTTCTCCGGCGATGCTCCGA-GATGGTGCCCCGACGAAGAAAAATGCG
** ** * * *
18346309 GCACCAGCACATGCCCGAGCCTGGCATGTGCTGTCGCAACCCTCGGTCCAGTCTGATCTTAGATT
775 GCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACT
* *
18346374 GGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
840 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * *
18346436 ACGAACGTGCGGGCGCTCAGTCGACCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCAGGTCC
1 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCC
* * * * * * *
18346501 CTCTCCACGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATG
66 CCCTCTACATGCTGCCAATCCTGCTGCCGCAACCCTTGATCTGGTCCGATCTTAGACTGGGAATG
* * * * * * ** * *
18346566 AACTCCGTATGCTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCA-CAAAACGAGCGTG
131 AACTTCGTATGC-----CT---AA-G-----CC-A-ACCGACG--AAACGAGC-AGGCGGGCGGG
* * * * * * * * *
18346630 CTGG-TGCTC-A-GCCGGACAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTTGAGTCCCCCTCT
177 CGGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC-GAT-AG---------
** * ** * * * ** *
18346692 ACCTGCTATCACAACCCTCGGTCT-GGTTC-CATCTTAGACTGGGAATGAACTCCGTTGCCTAA-
231 -GGTG--GT----A-GGTGGGTTTAGG--CACATCTT-CA-T----AT-TTCTGCG-TGCC-AAT
**** ** **** ** ** * *** *
18346754 GCCAACCGATGAAACGACTGGACGGGCGGGCTTACACTACGCTGG--CCAAAGAGGCGGGATGCG
277 G----CC-AT--TTTTA-TGG-CTTG-TAAATT-CA-TACAATGGTCCCTTA-AGCCTTCATGTG
* ** * * *** * *
18346817 CAAG--CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCAT-ATTTTTGCATGCCA
329 -AAGTTTCATGG--C-A-A--GACG-A-CT-CGTTT-TCTA-TTTTTCATGA-TTTT-C--G--A
* ** * ** * ** *
18346879 ATGCCATTTTTATGGCTT-GTA-AATTCATACAATGGTAAATTCGAAAGGACGTTTT-GCCCCAA
376 A--AC-TTTTTGCGG-TTCG-AGATTTTTTAAAAT--T-TTTTCGGAAGGA-GTTTTGGCCCCAA
* *
18346941 ACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAA
432 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
18347006 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGG
497 GTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * * *
18347071 AAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGA
561 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * * *
18347136 TAGGGGGCCAATATAAGGGCCCAGCACCAGCACCCACCGTACATCATGTGCGCACA-CCCCCTGG
626 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
*** * ** * * * *
18347200 CCCCCCATTTCACCAAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATCCTCCAACGATGGTG
691 CCCCCCCGATCATCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGA-GATGGTG
* * *** * * * ** *
18347265 CCTC-AGTGAAGAAAAATATAGTACCAGCACATGCTCGAGCGCAGCATGTGCTGTCGTAACCCTC
755 CCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC
*
18347329 GGT----T-CGATC-----C---------A------AT-CTTAGACTGGGAATGAACCCCGTATG
819 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
*
18347368 CCTAAGTCAACCCATGAA
884 CCTAAGTCAACCCACGAA
* * * * *
18347386 ACAAGCGTACGGGCGCTCAGTCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATC-AGTCGGGTC
1 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGA-TCGGGTC
* * * *
18347450 CCCCTCTGCATGCTG-CAGATCCTGCTGCTGCAACCC-TCAGTCTGATTCC-ATCTTAGACTGGG
65 CCCCTCTACATGCTGCCA-ATCCTGCTGCCGCAACCCTTGA-TCTG-GTCCGATCTTAGACTGGG
* * * *
18347512 AATGAACTCCGTATGCCTAAGCCAATCGATGAAA-G-G-A-GCGGGCGGGTGGGCAGGCACTACG
127 AATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGC-GGCACTACG
* * * * *
18347573 TCGGCCAGAGAGGCGAGATCCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
191 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
18347638 TTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
256 TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * *
18347703 TTCGTGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGT
321 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGC
* * *
18347768 GGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCCAAATTTGGTAGATGTGATCC
386 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCCCAAACTTGGTAGACGTGATCC
* * * *
18347833 TTGTATTTTTTTTTTTTGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTG
450 TTGTA---TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
** * * *
18347898 TGACCATTCAAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTCGCAGCAAACCTGTAAA
512 TGACCATT-TGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAA
* * * *
18347963 ATCACAAATGCTCTTTAAAGGGGTATGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
576 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * *
18348028 AGGGCCAAGCACCAGCACCCATCGCACATCATGTGTGCACACCCCCTCGGCCCCCCCGATCGTCG
641 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCG
* * ** * *
18348093 GAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGATGAAGAAAA
706 GAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCC-GAGATGGTGCCCCGACGAAGAAAA
* * * * * * * *
18348158 ATGCGACACCAGGACATGCTCAAGCCCAACATGTGCTGCCGCAACCCTTGGT-CGGTTCGATCTT
770 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTT
* * * * *
18348222 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGCACTCTGTACGCCCAAGTCAACCCATG
835 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
18348287 AA
900 AA
* * ** * ** * *
18348289 ACGAGCGTACGGGCGTTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGGATATCGGTCGCGTCC
1 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCC
* * * * * * * *
18348354 CCATCTATATGCTGCCGATCTTGCTGCCACAACCCTTGGTCTGATCGGATCTTAGACTGGGAATG
66 CCCTCTACATGCTGCCAATCCTGCTGCCGCAACCCTTGATCTGGTCCGATCTTAGACTGGGAATG
* * * * * *
18348419 AACTCCATATGCCCAAACCAACCGTCGAAACGAGCAGACGGGCGGGC--G-GGCACTACGCCGGC
131 AACTTCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGCACTACGCCGGC
* * * * *
18348481 CAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGTAAATCTTAAT
196 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * * * *
18348546 ATTTCTACATGGCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCGT
261 ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
* * ** *
18348611 GTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATCATTTTTTAAACCTTTTGCGGTTC
326 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTC
* *
18348676 GAGATTTTTTTAAAATGTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTA
391 GAGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
*
18348741 TTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
455 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* *
18348806 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAA
520 TG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAA
* * *
18348871 AGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAA
584 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * * * * **
18348935 GCACCAGCACCCATTGCACATCATGTGTGCACACCCCCCTGGCCCCCCCGATC-GCTGAAACCTG
649 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATC-GGAACCCC
* * * * * * *
18348999 AATGCCGTCGATCAGGTTTTCCGACGATGCTCCGGCGATGGTGCCCTGTCGAAGAAAAATGTGGC
713 AATGCCGCCGATCAGGTTCTCCGGCGATGCTCC-GAGATGGTGCCCCGACGAAGAAAAATGCGGC
* ** * * * *
18349064 ACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCCAATCTTAGATTGA
777 ACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
* * *
18349129 GAATGAACTCCGTATGCTTATATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
842 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * *
18349189 ACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCAGGTCC
1 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCC
* * * * * * *** * *
18349254 CTCTCTACATGCTGCCGATCCTACTACTGCAACCCTTGGTCCACTCCAACCTTAGACTGGGAATG
66 CCCTCTACATGCTGCCAATCCTGCTGCCGCAACCCTTGATCTGGTCCGATCTTAGACTGGGAATG
* * * * * * *
18349319 AACTCCGTATGCCTAAGCCAACAGACGAAACGA--A--TGGGCAGGCAGGCGGGCAGTACGTCGG
131 AACTTCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGC-GGCACTACGCCGG
* * * * *
18349380 TCGGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCA
195 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * *
18349445 TATTTCTACGTGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGTCTCTTAAGCCTTCG
260 TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * *
18349510 TGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAATTTTTGCGGTT
325 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTT
* * * *
18349575 CGGGATTTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAGACTTGGTAGATGTGATCCTTGTA
390 CGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
*
18349640 TTTTTGTTGGCATGCTA-AAAAACATTCAGCTAAAAACTC
455 TTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTC
18349679 AAAGAAAAAT
Statistics
Matches: 14613, Mismatches: 2778, Indels: 2277
0.74 0.14 0.12
Matches are distributed among these distances:
830 71 0.00
832 1 0.00
833 1 0.00
836 1 0.00
838 3 0.00
841 22 0.00
842 190 0.01
843 1 0.00
847 1 0.00
848 1 0.00
849 1 0.00
850 1 0.00
851 1 0.00
853 1 0.00
855 91 0.01
856 259 0.02
857 175 0.01
858 3 0.00
859 6 0.00
860 4 0.00
861 5 0.00
862 3 0.00
863 6 0.00
864 4 0.00
865 8 0.00
866 52 0.00
867 182 0.01
868 109 0.01
869 43 0.00
870 68 0.00
871 401 0.03
872 289 0.02
873 311 0.02
874 362 0.02
875 32 0.00
876 24 0.00
877 396 0.03
878 115 0.01
879 75 0.01
880 153 0.01
881 393 0.03
882 193 0.01
883 1018 0.07
884 470 0.03
885 139 0.01
886 18 0.00
887 791 0.05
888 264 0.02
889 46 0.00
890 33 0.00
891 33 0.00
892 35 0.00
893 157 0.01
894 141 0.01
895 287 0.02
896 200 0.01
897 341 0.02
898 32 0.00
899 433 0.03
900 1113 0.08
901 782 0.05
902 315 0.02
903 989 0.07
904 112 0.01
905 100 0.01
906 94 0.01
907 36 0.00
908 27 0.00
909 161 0.01
910 23 0.00
911 27 0.00
912 19 0.00
913 30 0.00
914 21 0.00
915 17 0.00
916 6 0.00
917 42 0.00
918 7 0.00
919 171 0.01
920 215 0.01
921 38 0.00
922 26 0.00
923 28 0.00
924 170 0.01
925 18 0.00
926 14 0.00
927 13 0.00
928 11 0.00
929 14 0.00
930 17 0.00
931 14 0.00
932 38 0.00
933 5 0.00
934 7 0.00
935 11 0.00
936 26 0.00
937 10 0.00
938 9 0.00
939 5 0.00
940 9 0.00
941 7 0.00
942 6 0.00
943 17 0.00
944 13 0.00
945 10 0.00
947 5 0.00
948 4 0.00
949 8 0.00
950 159 0.01
951 5 0.00
952 4 0.00
953 2 0.00
954 12 0.00
955 9 0.00
956 12 0.00
957 3 0.00
958 1 0.00
959 1 0.00
960 7 0.00
961 6 0.00
962 6 0.00
963 4 0.00
964 7 0.00
965 12 0.00
966 4 0.00
967 17 0.00
968 10 0.00
970 8 0.00
971 9 0.00
972 11 0.00
973 21 0.00
974 39 0.00
975 23 0.00
976 366 0.03
977 13 0.00
978 6 0.00
979 7 0.00
980 3 0.00
981 2 0.00
983 11 0.00
984 7 0.00
985 3 0.00
986 8 0.00
987 8 0.00
988 24 0.00
989 2 0.00
990 2 0.00
991 2 0.00
992 1 0.00
994 3 0.00
995 1 0.00
996 4 0.00
997 6 0.00
998 6 0.00
999 6 0.00
1000 4 0.00
1001 12 0.00
1002 15 0.00
1003 4 0.00
1004 15 0.00
1005 6 0.00
1006 7 0.00
1007 3 0.00
1008 7 0.00
1009 15 0.00
1010 12 0.00
1011 4 0.00
1012 6 0.00
1013 2 0.00
1014 2 0.00
1015 2 0.00
1016 8 0.00
1017 11 0.00
1018 10 0.00
1019 1 0.00
1021 8 0.00
1022 10 0.00
1023 8 0.00
1024 209 0.01
1025 259 0.02
1026 289 0.02
1027 244 0.02
1028 202 0.01
1029 217 0.01
1030 288 0.02
1031 161 0.01
1032 197 0.01
1033 146 0.01
1034 134 0.01
1035 95 0.01
1036 126 0.01
1037 122 0.01
1038 238 0.02
1039 117 0.01
1040 169 0.01
1041 150 0.01
1042 123 0.01
1043 103 0.01
1044 90 0.01
1045 96 0.01
1046 86 0.01
1047 276 0.02
1048 284 0.02
1049 49 0.00
1050 51 0.00
1051 77 0.01
1052 53 0.00
1053 200 0.01
1054 52 0.00
1055 56 0.00
1056 36 0.00
1057 27 0.00
1058 31 0.00
1059 29 0.00
1060 164 0.01
1061 42 0.00
1062 50 0.00
1063 27 0.00
1064 71 0.00
1065 78 0.01
1066 42 0.00
1067 28 0.00
1068 55 0.00
1069 99 0.01
1070 68 0.00
1071 94 0.01
1072 163 0.01
1073 123 0.01
1074 50 0.00
1075 129 0.01
1076 35 0.00
1077 44 0.00
1078 29 0.00
1079 29 0.00
1080 15 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCC
CCCTCTACATGCTGCCAATCCTGCTGCCGCAACCCTTGATCTGGTCCGATCTTAGACTGGGAATG
AACTTCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGCACTACGCCGGC
CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTC
GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
GAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATG
CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAACCCCAAT
GCCGCCGATCAGGTTCTCCGGCGATGCTCCGAGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
GCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
Found at i:18333748 original size:26 final size:26
Alignment explanation
Indices: 18333719--18333771 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18333709 TCGGTCCGAT
18333719 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18333745 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18333771 C
1 C
18333772 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18334655 original size:26 final size:26
Alignment explanation
Indices: 18334619--18334671 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18334609 CTGATTCGAT
* *
18334619 CTTAGATTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18334645 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18334671 C
1 C
18334672 CTACGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18336415 original size:26 final size:26
Alignment explanation
Indices: 18336386--18336438 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18336376 CTGGTCTGAT
*
18336386 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18336412 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18336438 C
1 C
18336439 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18337305 original size:26 final size:26
Alignment explanation
Indices: 18337269--18337321 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18337259 CTGGTCTGAT
18337269 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18337295 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18337321 C
1 C
18337322 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18337631 original size:26 final size:26
Alignment explanation
Indices: 18337595--18337647 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18337585 CTGATTCGAT
18337595 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18337621 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18337647 C
1 C
18337648 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18337780 original size:326 final size:326
Alignment explanation
Indices: 18337158--18337809 Score: 885
Period size: 326 Copynumber: 2.0 Consensus size: 326
18337148 CAATGCTGTC
* ** ** *
18337158 GATCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGTCGAAGAAAAATGTAGCACCAGTACA
1 GATCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCCGTCGAAGAAAAATACAGCACCAGCACA
*
18337223 TGCCTGAGCCCAGCATGTGCTACCGCAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACT
66 TGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACT
* * * * *
18337288 CCGTATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGTAACGAGCGTGCAGGC
131 CCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGC
* * ** * * *
18337353 GCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTTGGGGATTGGCCGGGTCCCCTTCTGTATGCTG
196 ACTCAGCCGACCAGAGGGGCGGGATGCACAAGTCAGGGATCGACAGGGTCCCCTTCTGTATGCTG
* * *
18337418 CCGATCCTGTTGCCACAGCCCTCGATCCGATCCGATCTTAGACTGTGAATGAACTCCGTATGCCT
261 CCGATCCTGCTGCCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
18337483 A
326 A
* * *
18337484 GATCAAGTTCTCCGACGATGCTCCTAGGATGGTGCCCCGTCGAAGAAAAATACGGCACCAGCACA
1 GATCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCCGTCGAAGAAAAATACAGCACCAGCACA
** ** *
18337549 TGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGAT-TCGATCTTAGACTGGGAATGAAC
66 TGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAATCTGGTCT-GATCTTAGACTGGGAATGAAC
*
18337613 TCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCAGG
130 TCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGG
* * * ** *
18337678 CACTCAGTCGGCCAGAGGGGCTGGATGCACAAGTCAGGGATCGACAGGGT-CATTCTCTGTGTGC
195 CACTCAGCCGACCAGAGGGGCGGGATGCACAAGTCAGGGATCGACAGGGTCCCCT-TCTGTATGC
* * * * * *
18337742 TGCCGATCCTGCTGCTACAACCCTTGGTCTGGTCCGATCTTAGGCTGGGAATGAACTCCGTATGC
259 TGCCGATCCTGCTGCCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
18337807 CTA
324 CTA
18337810 AGCCAACCGA
Statistics
Matches: 281, Mismatches: 43, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
325 3 0.01
326 278 0.99
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (326 bp):
GATCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCCGTCGAAGAAAAATACAGCACCAGCACA
TGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACT
CCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGC
ACTCAGCCGACCAGAGGGGCGGGATGCACAAGTCAGGGATCGACAGGGTCCCCTTCTGTATGCTG
CCGATCCTGCTGCCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
A
Found at i:18338514 original size:26 final size:26
Alignment explanation
Indices: 18338478--18338530 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18338468 CCTGTCTGAT
18338478 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
18338504 CTTAGACTGGGAATGGACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
18338530 C
1 C
18338531 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:18339228 original size:888 final size:885
Alignment explanation
Indices: 18337511--18340029 Score: 3348
Period size: 871 Copynumber: 2.9 Consensus size: 885
18337501 ATGCTCCTAG
*
18337511 GATGGTGCCCCGTCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCA
1 GATGGTGCCCCGAC-AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCA
18337576 ACCCTCGGT-CTGAT-TCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
65 ACCCTCGGTCCTG-TCT-GATCTTAGACTGGGAATGAACT-CATATGCTTAGACTGGGAATG-AC
* * *
18337639 TCCGTATGCCTAAGTCAACCCACGAAA-TGAGCATGC-AGGCACTCAGTCGGCCAGAGGGGCTG-
126 TCTGTATGCCTAAGTCAACCCACGAAACT-AGCGTGCGA-GCACTCAGCCGGCCAGAGGGG-TGA
* * ** * * *
18337701 GATGCACAAGTC-AGGGATCGACAGGGT-CATTCTCTGTGTGCTGCCGATCCTGCTGCTACAACC
188 GATGCACAAGCCGA-GGATCGTCA-GGTCCCCT-TCTGCGTGCTGCCAATCCTGCTGCCACAACC
** * *
18337764 CTTGGTCTGGTCCGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC---
250 CTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGG
* * * *
18337826 AAGCGAGCGGGCAGGCACCACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT
315 AGGCGGGCGGGCGGGCACAACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT
*
18337891 GGTAGGTGGGTTTAAGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAT
380 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAT
* *
18337956 TCATATAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGATGACTCGTTTT-TATTTTT
445 TCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * *
18338020 CACT-ATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATCTTTTCGAAAGGAGTTTTCGCC
510 CA-TGATTTTTGAAACTTTTT-CGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCC
* * *
18338084 CCAAACTTGGTAGATGTGATCCTTGTATTTTTTTGGCATGCATAAAAAAATCCAGCTAAAAACTC
573 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
18338149 GAAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCTAA
638 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * * * *
18338214 TGGTAGCAAACCTGTAAAATCTCAACTACTCTTTATGGGGGTTTGAGTTCTCAAGGTTTGATGAG
703 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTTAAGGTTAGATGAG
*
18338279 GGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCACACACCCCCT
768 GGATAGGGGCCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCACACA-CCCCT
* **
18338344 CGGCCCCCCTGATCGTCGAAACCCCAATGCCGTCGGTCAGG-T-T-C-T-CCGGC
832 CGGCCACCC-GATCGTCGAAACCCCAATGCCGTCAATCAGGTTCTCCATCCCGGC
*
18338394 GATGGTGCCCCGACATAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCA
1 GATGGTGCCCCGACA-AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCA
*
18338459 ACCAT-GGATCCTGTCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAATGGACT
65 ACCCTCGG-TCCTGTCTGATCTTAGACTGGGAATGAACTC-ATATGCTTAGACTGGGAAT-GACT
* * * ** *
18338523 CTGTATGCCTAAGTCAACCCATGAAACTAGTGTGCGAGCACCCAGCCGGCCAGAAAGGTGAGATA
127 CTGTATGCCTAAGTCAACCCACGAAACTAGCGTGCGAGCACTCAGCCGGCCAGAGGGGTGAGATG
** * * *
18338588 CGTAAGCCGAGGATCAGTCAGGTCCCCTTCTGCATGCTTCCAATCCTGCTGCCACAACCCTCAAT
192 CACAAGCCGAGGATC-GTCAGGTCCCCTTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCAGT
* *
18338653 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGGGTGGGCG
256 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGG-AGGCG
* * *
18338718 GGCGGGCGGGCACTACGTCGG-TAGAGAGGCGGGAAGCGCAAGCCGTGGATCGATAGGGTGGTAG
320 GGCGGGCGGGCACAACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* ** *
18338782 GTGGGTTTAGGCACATCTTAATATTTCTATGTGCCAATGCCATTATTATGGCTTGTAAATTCATA
385 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
18338847 CAATGGTCCCTTAAGCCTTTGTGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGA
450 CAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* *
18338912 TTTTGGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAG
515 TTTTTGAAACTTTTT-CGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAC
*
18338977 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
579 TTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
18339042 GTACAAGATTCTGCGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCA
643 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
18339107 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTTGAGGTTAGATGAGGGATA
708 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTTAAGGTTAGATGAGGGATA
*
18339172 GGGGCCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGCCA
773 GGGGCCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCACACACCCCTCGGCCA
* *
18339237 CCCGATCGTTGGAACCCCAATGCCGTCAATCAGGTTCTCCGATGATGCCCCGGC
838 CCCGATCGTCGAAACCCCAATGCCGTCAATCAGGTTCTCC----AT--CCCGGC
* * * * * * * *
18339291 GATGGTGCCGCGACAAAGAAAAGTACGACACTAGCACATGTCCGATCCTAGCATGTGCTGTCACA
1 GATGGTGCCCCGAC-AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCA
*
18339356 ACCCTCGGTCCGGTCTGATCTTAGACT-GG---G-A---ATA-----A-AC------T--C-CT-
65 ACCCTCGGTCCTGTCTGATCTTAGACTGGGAATGAACTCATATGCTTAGACTGGGAATGACTCTG
* * * * * *
18339397 TATGCCTAAGTCAAGCCACGAAACGAGCGTACGAGCGCTCAGCCGGCTAGAGGGGCGAGATGCAC
130 TATGCCTAAGTCAACCCACGAAACTAGCGTGCGAGCACTCAGCCGGCCAGAGGGGTGAGATGCAC
* * ** * *
18339462 AAGCCGGGGATCGGTCGGGTCCCCCACTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTTCG
195 AAGCCGAGGATC-GTCAGGTCCCCTTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCAGTCCG
* * * * *
18339527 GTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAATGGGCAGGCGGGT
259 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGG-AGGCGGGC
* * * * *
18339592 GGGCGGGCACAACGTCGGCCAAAGAGGCAGGATGCGTAAGTCGTGGATCGATAGAGTGGTAGGTG
323 GGGCGGGCACAACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
18339657 GGTTTAGGTACATTTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
388 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
18339722 TGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
453 TGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * * *
18339787 TTGAAACTTTTCTCGGTTTGGGATTTTTTAAAA-TTTTTTGGAAGGATTTTTGGCCCCAATCTTG
518 TTGAAACTTTT-TCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
18339851 GTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
582 GTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
18339916 CATGATTTTGTGACCATTTGCAAAAAA-TGTCCCCATTTCAGACAC-TTAATGGCTACTGGCAGC
646 CAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
18339979 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTT
710 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTTAAGGTT
18340030 CTTCAAGTTC
Statistics
Matches: 1450, Mismatches: 151, Indels: 83
0.86 0.09 0.05
Matches are distributed among these distances:
870 66 0.05
871 305 0.21
872 195 0.13
873 2 0.00
876 1 0.00
882 8 0.01
883 256 0.18
884 13 0.01
886 177 0.12
887 127 0.09
888 210 0.14
889 1 0.00
892 1 0.00
893 1 0.00
894 1 0.00
896 2 0.00
897 81 0.06
898 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.27
Consensus pattern (885 bp):
GATGGTGCCCCGACAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAA
CCCTCGGTCCTGTCTGATCTTAGACTGGGAATGAACTCATATGCTTAGACTGGGAATGACTCTGT
ATGCCTAAGTCAACCCACGAAACTAGCGTGCGAGCACTCAGCCGGCCAGAGGGGTGAGATGCACA
AGCCGAGGATCGTCAGGTCCCCTTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCAGTCCGGT
CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGAGGCGGGCGGG
CGGGCACAACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
AAACTTTTTCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTTAAGGTTAGATGAGGGATAGGGGCCCA
ATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCACACACCCCTCGGCCACCCGATCG
TCGAAACCCCAATGCCGTCAATCAGGTTCTCCATCCCGGC
Found at i:18340180 original size:26 final size:26
Alignment explanation
Indices: 18340141--18340193 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18340131 CTGGTCTGAT
18340141 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18340167 CTTAGACTGTGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18340193 C
1 C
18340194 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18341079 original size:25 final size:26
Alignment explanation
Indices: 18341025--18341101 Score: 138
Period size: 26 Copynumber: 3.0 Consensus size: 26
18341015 CTGGTCTGAT
18341025 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18341051 CTTAGACTGGGAATGAACT-TGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
18341076 CTTAGACTGGGAATGAACGCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18341102 TCTAAGTCAA
Statistics
Matches: 49, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
25 24 0.49
26 25 0.51
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18341983 original size:26 final size:26
Alignment explanation
Indices: 18341945--18341994 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
18341935 CCAGTCTGAT
18341945 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18341971 CTTAGAC-AGGGAATGAGCTCCGTA
1 CTTAGACTA-GGAATGAACTCCGTA
18341995 AGCCTAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18342871 original size:26 final size:26
Alignment explanation
Indices: 18342842--18342894 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18342832 CCGGTCCGAT
* *
18342842 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
18342868 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
18342894 C
1 C
18342895 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:18343777 original size:26 final size:26
Alignment explanation
Indices: 18343725--18343777 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18343715 CCGGTCCGAT
* *
18343725 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGAATGGGAATGAACTCCACATG
*
18343751 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCACATG
18343777 C
1 C
18343778 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCACATG
Found at i:18344400 original size:887 final size:888
Alignment explanation
Indices: 18340036--18349678 Score: 10304
Period size: 887 Copynumber: 10.7 Consensus size: 888
18340026 GGTTCTTCAA
* *
18340036 GTTCTCCGACGATGCTCCAACGATGGTGCCCC-AGCGAAGAAAAATACGGCACCAGCACATGCCC
1 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGCCC
* * * * *
18340100 GAGCCCAGCATGTGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
65 GAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * * * * * *
18340165 TGCTTAGACTGTGAATGAACTCGGTATGCCAAAGTCAACCCACGAAATGTGAGTGCAGGCGCTCA
130 TGCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
18340230 GTCGGCCAGAGGGGCGGGATGTGAAAACCGGGGATCGG-TCGGGTCCCCCTCTGTGTGCTACCGA
195 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCT---G-
* * *
18340294 TCCTGCTGCCATAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGC
255 ---T-C-G-C--AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGC
* * * * ** *
18340359 CAACCGATGAAATGAGCGGGCGAGCGGGCGGGCACTATGCCGGCCAA-AGAGATGGGATGTGCAA
312 CAACCGATGAAACGAGCGGACGGGCGGGCGGGCACTACGCCGG-CAAGAGAGGCGGGATGCGCAA
* *
18340423 ACCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATA-TT-T-C-TG-C-ATGCCA
376 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
18340482 -----A-------TAAATTCATA-AATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGAC
441 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGAC
* ** *
18340534 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTAACGGTTCAGGATTTTTTAAAATTTTTT
506 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * * * *
18340599 TGAAAGGGGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAA
571 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGC----AC
* * *
18340664 AAAAAAAATCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCA
632 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
18340729 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
697 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
18340794 TGAGTTGTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGACAAGCACCAGCACCCATTGT
762 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGC
* * * *
18340859 ACATCATGTGCACACA-CCCCCC-GACCCCCTCGATCG-CTGGAACCGCAATGCCGCCGGTCAA
827 ACATCATGTGCGCACACCCCCCCGGCCCCCCT-GATCGTC-GGAACCCCAATGCCGCCGGTCAG
* ** * * *
18340920 GTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAGTGCGGCCCCAGCACATGCCCG
1 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCG
* * * * * * *
18340985 AGCCCAACATGTACGGCCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
66 AGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC-----
* * *
18341050 GCTTAGACTGGGAATGAACTTGTATGCTTAGACTGGGAATGAACGCTGTATGTCTAAGTCAACCC
126 -C---G--T----ATG--C-T-TA-G---A-A-TGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * **
18341115 ACGAAACGAGCGTGCGGGCGCTGAGCCGGCCAGAGGGGCGGGATGTGTAAGTCGGGGATCGGCCA
171 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTG
*
18341180 GGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCCGTCTGGTCCAATCTTAGACTGG
236 GGTCCCCCTCTGCGTGCT---G-------T--CGCAACCCTCGGTCTGGTCCAATCTTAGACTGG
* * * **
18341245 GAATGAACTCCATATGCCTAAGCCAACCAACGAAACGA---G-TGGGCAAGCGGGCACTACGCCG
289 GAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGCGGACGGGCGGGCGGGCACTACGCCG
* * *** * *
18341306 GCCAGAGAGACGGGATGCGCAAGTTATGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCATC
354 GCAAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* **
18341371 ATATTTTTGGGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
419 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * * * *
18341436 GTGTGAAGTTTCACGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACTGC
484 GTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGT
* * * *
18341501 TCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTAGCCCCAAAATTGGCAGATGTGATCCTTGT
549 TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGT
* ** *
18341566 ATTTTTTTTCACATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCAT
614 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * *
18341631 TTG-AAAAAGTATCCCCATTTCAGACACTTTAAAGGCTACTGACAGCAAACCTGTAAAATCTCAA
679 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * *
18341695 ATGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGTCA
744 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* *
18341760 AGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCTGATTGCCGGAACCCC
809 AGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCTGATCGTCGGAACCCC
*
18341825 AATGCCGCCGATCAG
874 AATGCCGCCGGTCAG
* ** * *
18341840 GTTCTCCGGGGATGCTCTAACGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCTCG
1 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCG
* * * * * *
18341905 AGCCTAGCATCTGCTGTCGTAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTAT
66 AGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
18341970 GCTTAGACA-GGGAATGAGCTCCGTAAGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCA
131 GCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
18342034 GCCAGCCGGAGGGGCGGGATGTGCAAGCCGGGGATCAG-TCGGGTCCCCCTCTGCTTGCTGTCGT
195 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGTCGC
*** * * *
18342098 AACCCT-GGTTCTGGTTTGATCTTAGACTGGGAATCAATTCCGTATGCCTAAGCCAACCGATGAA
259 AACCCTCGG-TCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAA
* * * * * *
18342162 ATGAGCGGACAGACGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGAATCA
323 ACGAGCGGACGGGCGGGCGGGCACTACGCCGGCAAGAGAGGCGGGATGCGCAAGCCGTGG-ATCG
** * *
18342227 ATAGGGGTGGGTAGGTGGGTTTTACACACATCTTTCTTATTTCTATG-TTGCCAATGCCATCTTT
387 ATA-GGGT-GGTAGGTGGG-TTTAGGCACATC-TTCATATTTC--TGCATGCCAATGCCAT-TTT
* * * *
18342291 TATGGGCTTGCAAATTCATAACAATGGTCCCTGAA-CCCTCGTGTGAACTTTCATGGCAAGACGA
445 TAT-GGCTTGTAAATTCAT-ACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGA
* *
18342355 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
508 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* * * **
18342420 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTAATCCCTGTATTTTTGTTGGCATGTGCAAAAAA
573 GAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
18342485 ATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTGT-A
638 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT-TCA
* * *
18342549 GACACTTTAATGGGTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGTGT
702 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
18342614 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATTGCACATC
767 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATC
* *
18342679 ATGTGCGCGCAACCCCCCCGGCCCCCCTGATCGTCGGAACCCCAACGCCGCCGGTCAG
832 ATGTGCGCAC-ACCCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAG
* * * * * * * *
18342737 TTTCTCCAGCGATGGTCCGGCAATGGTACCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCG
1 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCG
** * * *
18342802 AGCCTTGCATGTGCAGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
66 AGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
18342867 GCTTAGAATGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCCTGCGGGCGCTCAG
131 GCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
18342932 CCGGCCAGAGGGGCGGGATGCGCAAGCTGAGGATCGGCTGGGTCCACCTCTACGTGCTGCCGTAA
196 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGTCGCAA
* *
18342997 CCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACG
261 CCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACG
* * *
18343062 AGCGGA----CGGGCGGGCACTACGCCGGTAAGAGAGACGGGATGCGTAAGCCGTGGATCGATAG
326 AGCGGACGGGCGGGCGGGCACTACGCCGGCAAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
*
18343123 GGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
391 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* * * *
18343188 AATTCATACAATGGTCCCTGAACCCTTCGTGTGAAATTTAATGGCAAGACGACTCGTTTTCTATT
456 AATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* ** * * *
18343253 TTTCATGATTTTCAAAACTTTTTGCGGTTTGAGATTTTTT-AAATTTTTTCGGAAGGAGTTTTAG
521 TTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * **
18343317 CCCCAAACTTGGTAGATGTAATCCTTGTATTTTTTTTGGCATGTGCAAAAAAATTCAGCTAAAAA
586 CCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
18343382 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTGT-AGACACTTTAATGG
651 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT-TCAGACACTTTAATGG
* * * *
18343446 CTATTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTGGAGGTTTGA
715 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *
18343511 TGAGGGATAGGGGCCCAATATAAGGGCCAAGCACCAGCACCCATTGCACATCATGTGCGCGCACC
780 TGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACC
*
18343576 CCCCCGGCCCCCCTGATCGTCGGAACCCCAACGCCGCCGGTCAG
845 CCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAG
* ** *
18343620 TTTCTCCGGTAATGCTCCGACGATGGTGCCTCGACGAAGAAAAATACGGCACCAGCACATGCCCG
1 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCG
** * * *
18343685 AGCCTTGCATGTGCAGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGCAT
66 AGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
18343750 GCTTAGAATGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAG
131 GCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
18343815 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGTCGCAA
196 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGTCGCAA
*
18343880 CCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACG
261 CCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACG
* *** * * * *
18343945 AGCGGATGGGCATACAGGCACTACGTCGGCAATAGAGGCGGGATGCGTAAGCCGTGGATCGATAG
326 AGCGGACGGGCGGGCGGGCACTACGCCGGCAAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
*
18344010 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTCTATGGCTTGTA
391 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
*
18344075 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
456 AATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
18344140 TTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGCAGTTTT-A
521 TTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * * * * * *
18344204 CCCCAAACTTAG-ATGACGTAATCCCTGTATTTTTGTTGGCATGTACAAAAAAATTTAGTTAAAA
586 CCCCAAACTTGGTA-GATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
18344268 ACTCAAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
650 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
18344333 CTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTGGAGGTTTGA
715 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
18344398 TGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATTGCACATCATGTGCGCGCACC
780 TGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACC
* *
18344463 CCCCCGGCCCCCCTGATCGTCGGAACCCCAACGTCGCCGGTCAG
845 CCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAG
* * ** * *
18344507 TTTTTCCGGTAATGCTCCGACGATGGTGCCTCGACGAAGAAAAATATGGCACCAGCACATGCCCG
1 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCG
** * * *
18344572 AGCCTTGCATGTGCAGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGCAT
66 AGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
18344637 GCTTAGAATGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAG
131 GCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
18344702 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GCT-GGT-CCCCTCTGTGTGCTGCCGCAA
196 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGTCGCAA
* *
18344764 CCCTCGGTCCGGTCCAAATCTTAGACTGGGAATGAACTGCATATGCCTAA--CAACCGATGAAAC
261 CCCTCGGTCTGGTCC-AATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAAC
*** * * * * *
18344827 GAGC-GACGGGCAATACAGGCACTACGTCGGCAATAGAGGCGGGATACGTAAGCCGTGGATCGAT
325 GAGCGGACGGGC-GGGCGGGCACTACGCCGGCAAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
*
18344891 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTCTATGGCTTG
389 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
18344956 TAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCAT-GCAAGACGACTCGTTTTCTA
454 TAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * *
18345020 -TTTTCACTATTTTTTGAAACTTTTTACGGTTCGGGAATTTTTT-AAATTTTTT-GGAAGCAGTT
519 TTTTTCACGA-TTTTTGAAACTTTTTGCGGTTCGGG-ATTTTTTAAAATTTTTTCGGAAGGAGTT
* * * * * * *
18345082 TT-ACCCCAAACTTAG-ATGACGTAATCCCTGTATTTTTGTTGGCATGTACAAAAAAATTCAGTT
582 TTGGCCCCAAACTTGGTA-GATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* *
18345145 AAAAACTCAAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
646 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * *
18345210 TTGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGATGTGAGTTCTCCAGGT
711 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * * *
18345275 TCGATGAGGGATAGGGGGCCAATATAAGGTCCAAGCACCAGCACCCAACACACATCATGTGCGCA
776 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCA
*
18345340 CACCCCCCCGGCACCCCC-GATCGTCGGAACCCCAATGCCGCAGGTCAG
841 CACCCCCCCGGC-CCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAG
* * * * *
18345388 GTTCTCCGACAATGCTCTGACGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCCTG
1 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCG
*
18345453 ACCCCAGCATGTGCTG-CTGCAA-CC-C--T-C-G---G-TC-----C-------G-A-TCCG-A
66 AGCCCAGCATGTGCTGTC-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* *
18345492 T-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCA
130 TGCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** * *
18345556 GTCGGCCAGAGGGGCGAGATGCGCAAGCCAAGGATCGACCGGGTCCCCCTCTATGTGCTGTCGAA
195 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTC----TGC-GT-G--
* **
18345621 CTTACAGCCGCAACCCTTAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGA-ATGCCTAAGC
252 C-T---GTCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCC-ATATGCCTAAGC
* * * ** * * * *
18345685 CAACTGACGAAACAAGCGGACGGGCGGGCAAGCACTACGTCGCCCAGAAAGGCGGGATGCGCAAG
312 CAACCGATGAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCAAGAGAGGCGGGATGCGCAAG
* * * * * **
18345750 CCGTGGATCAATAGGGTGGTACGTGGGTTTCGACACATCTTCATATTTATGTGTGCCAATGCCAT
377 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
18345815 TTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACG
442 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACG
** * * ** * *
18345880 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTGGAGGTTCAAGATTTTTTAAACTTTTTTT
507 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
* *
18345945 GGAAGGAGTTTTGGCCCCAAGCTTGGTAGATGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAA
572 GGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
18346010 AATTCAGCTAAAAACACAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
637 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
18346075 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTTTTTAAGGGGGTGTGAGT
702 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
18346140 TCTCGAGGTTTGATGATGGATAAGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATC
767 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATC
* * * * * * * *
18346205 ATGTGGGCACACCCCCCCGACCCCCC-GATCATCGAAACCCCAATGGCACCAGTCAA
832 ATGTGCGCACACCCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAG
*
18346261 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAAGAAGAAAAATACGGCACCAGCACATGCCCG
1 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCG
** * * * *
18346326 AGCCTGGCATGTGCTGTCGCAACCCTCGGTCCAGTCTGATCTTAGATTGGGAATGAACTTCGTAT
66 AGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
18346391 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAG
131 GCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * **
18346456 TCGACCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCAGGTCCCTCTCCACGTGCTGCCGATC
196 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGT--C-C-CC-C-T-CTG-CG---
* * * ** *
18346521 CTGCTGCCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
250 -TGCTGTCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGC-----CT-
* * * * * ** * * *
18346586 GGAATGAACTCCCTATGCCTAAGTCAACCCA-CAAAACGAGCGTGCTGGTGCTC-A-GCCGG-AC
308 --AA-G-----CC-A-ACC-GA-TGAAACGAGC-GGACGGGCGGGC-GG-GCACTACGCCGGCA-
* * * * * * ** ** * * *
18346647 AGAGGGGCGGGATGCGCAAGTCGGGGATCGGTTGAGTCCCCCTCTACCT-GCTATCA--CAACCC
357 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT-----GGTAGGTGGGT-TTAGGC-A-CA
* * ** * *** * * * * *
18346709 TCGGTC-TGGTTCCATCTTAG-ACTGGGAATG-AACTCCGT-TGCCTAAGCCAACCGA-TGAAAC
414 TC-TTCAT-ATT---TC-T-GCA-TGCCAATGCCA-TTTTTATGGCT-TG-TAA---ATTCATAC
* * * *** *
18346769 GACTGGACGGGCGGGCTT-A-CACTACGCTG-GCCAAAGAGGCGGGATGCGCAAGCCATGGA-TC
465 -AATGGTC---C---CTTAAGC-CTTCG-TGTG---AAGTTTC---ATG-GCAAG--A-CGACTC
* ** * * **
18346830 GATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGC
511 G-T---TTTCTA--T---TTT-------TC-AC-GATTTTTG-A----AA---C-TTTTTGCGG-
** * ** * ** * *
18346895 TT-GTAAATTCATACAATGGTAAATTCGAAAGGACGTTTT-GCCCCAAACTTGGTAGACGTGATC
548 TTCGGGATTTTTTAAAAT--T-TTTTCGGAAGGA-GTTTTGGCCCCAAACTTGGTAGATGTGATC
* *
18346958 CCTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
609 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
18347023 ACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAAT
674 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
18347088 CTCAAACGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
739 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * * ** **
18347153 GGCCCAGCACCAGCACCCACCGTACATCATGTGCGCACA-CCCCCTGGCCCCCCAT-TTCACCAA
804 GGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC-TGATCGTCGG
*
18347216 AACCCCAATGCCGTCGGTCAG
868 AACCCCAATGCCGCCGGTCAG
* * * * ** * *
18347237 GTTCTCCGGCGATCCTCCAACGATGGTGCCTC-AGTGAAGAAAAATATAGTACCAGCACATGCTC
1 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGCCC
* *
18347301 GAGCGCAGCATGTGCTGTCGTAACCCTCGGT----T-CGATC-----C---------A------A
65 GAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * * *
18347341 T-CTTAGACTGGGAATGAACCCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTCA
130 TGCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
18347405 GTCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAG-TCGGGTCCCCCTCTGCATGCTGCAGA
195 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGC--G-T---G-
* * *
18347469 TCCTGCTGCTGCAACCCTCAGTCTGATTCC-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
252 --CTG-T-C-GCAACCCTCGGTCTG-GTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAG
* * * * * * * * * *
18347533 CCAATCGATGAAAGGAGCGGGCGGGTGGGCAGGCACTACGTCGGCCAGAGAGGCGAGATCCGTAA
311 CCAACCGATGAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCAAGAGAGGCGGGATGCGCAA
**
18347598 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
376 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
18347663 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGAC
441 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGAC
* * * *
18347728 GACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTT
506 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
18347793 TGGAAGGAGTTTTGGCCCCCAAATTTGGTAGATGTGATCCTTGTATTTTTTTTTTTTGCATGCAT
571 CGGAAGGAGTTTTGG-CCCCAAACTTGGTAGATGTGATCCTTGTA---TTTTTGTTGGCATGCAC
* ** *
18347858 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTCAAAAAAAGTGTTCCCA
632 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * *
18347923 TTTCAGACACTTTAATGGCTACTCGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAAGGGGTA
697 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
18347988 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGC
762 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGC
* * * *
18348053 ACATCATGTGTGCACACCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
827 ACATCATGTGCGCACACCCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAG
** * * * * * * *
18348115 GTTCTCCGATGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGACACCAGGACATGCTCA
1 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCG
* * * *
18348180 AGCCCAACATGTGCTGCCGCAACCCTTGGT-CGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
66 AGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * * * *
18348244 GCTTAGACTGGGAATGCACTCTGTACGCCCAAGTCAACCCATGAAACGAGCGTACGGGCGTTCAG
131 GCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** ** *
18348309 CCGGCCAGAGGGGTAGGATGCGCAAGCCGGATATCGG-TCGCGTCCCCATCTATATGCTGCCGAT
196 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCC--C----T-CTG-CG--
* * * * ** * *
18348373 CTTGCTGCCACAACCCTTGGTCTGATCGGATCTTAGACTGGGAATGAACTCCATATGCCCAAACC
250 --TGCTGTCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
* *
18348438 AACCG-TCGAAACGAGCAGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
313 AACCGAT-GAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCAAGAGAGGCGGGATGCGCAAG
* * * * * *
18348502 CCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGTAAATCTTAATATTTCTACATGGCAATGCCAT
377 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
18348567 TTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAACACG
442 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACG
* * * *
18348632 ACTCGTTTTCTATTTTTCATC-ATTTTTTAAACCTTTTGCGGTTCGAGATTTTTTTAAAATGTTT
507 ACTCGTTTTCTATTTTTCA-CGATTTTTGAAACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTT
18348696 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAA
570 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18348761 AACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
635 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
18348826 CAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGA
700 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
18348891 GTTCCCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGCACCAGCACCCATTGCACA
765 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACA
* * * * ** * *
18348955 TCATGTGTGCACACCCCCCTGGCCCCCCCGATCG-CTGAAACCTGAATGCCGTCGATCAG
830 TCATGTGCGCACACCCCCCCGGCCCCCCTGATCGTC-GGAACCCCAATGCCGCCGGTCAG
* * * * * ** *
18349014 GTTTTCCGACGATGCTCCGGCGATGGTGCCCTGTCGAAGAAAAATGTGGCACCAGCACATGCTCG
1 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCG
* * * *
18349079 AGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCCAATCTTAGATTGAGAATGAACTCCGTAT
66 AGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
18349144 GCTTATATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
131 GCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
18349209 TCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATC-GATCAGGTCCCTCTCTACATGCTGCCGAT
196 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGT-CC-C-C--C-T-CTG-CG-T
* * * *** * *
18349273 CCTACTACTGCAACCCTTGGTCCACTCCAACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
251 GCT-GT-C-GCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
* * ** * * * * * *
18349338 AACAGACGAAACGAATGGGCAGGCAGGCGGGCAGTACGTCGGTC-GGAGAGGCGGGATGCGCAAG
313 AACCGATGAAACGAGCGGACGGGCGGGCGGGCACTACGCCGG-CAAGAGAGGCGGGATGCGCAAG
* * * *
18349402 CCATGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
377 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * *
18349467 TTTTATGACTTGTAAATTCATACAATGGTCTCTTAAGCCTTCGTGTGAAGTTTCAAGGCAAGACG
442 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACG
* *
18349532 ACTCGTTTTCTATTTTTCACGATTTTTGAAAATTTTTGCGGTTCGGGATTTTTAAAAATTTTTTC
507 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
*
18349597 GGAAGGAGTTTTGGCCCCAGACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCTA-AAAA
572 GGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAA
*
18349661 ACATTCAGCTAAAAACTC
636 AAATTCAGCTAAAAACTC
18349679 AAAGAAAAAT
Statistics
Matches: 7526, Mismatches: 888, Indels: 675
0.83 0.10 0.07
Matches are distributed among these distances:
855 90 0.01
856 3 0.00
857 7 0.00
858 7 0.00
859 1 0.00
862 2 0.00
863 2 0.00
864 1 0.00
866 2 0.00
867 1 0.00
869 31 0.00
870 20 0.00
871 165 0.02
872 59 0.01
873 132 0.02
874 270 0.04
875 5 0.00
876 18 0.00
877 211 0.03
878 112 0.01
879 3 0.00
880 5 0.00
881 374 0.05
882 71 0.01
883 600 0.08
884 428 0.06
885 131 0.02
886 14 0.00
887 777 0.10
888 37 0.00
889 14 0.00
890 21 0.00
891 14 0.00
892 14 0.00
893 57 0.01
894 11 0.00
895 295 0.04
896 162 0.02
897 330 0.04
898 6 0.00
899 401 0.05
900 561 0.07
901 7 0.00
902 16 0.00
903 395 0.05
904 36 0.00
905 83 0.01
906 11 0.00
907 4 0.00
908 1 0.00
909 172 0.02
910 4 0.00
911 14 0.00
912 11 0.00
913 4 0.00
914 3 0.00
915 1 0.00
916 3 0.00
917 50 0.01
918 5 0.00
919 153 0.02
920 185 0.02
921 21 0.00
922 15 0.00
923 16 0.00
924 149 0.02
926 5 0.00
927 14 0.00
928 13 0.00
929 3 0.00
930 3 0.00
931 6 0.00
932 48 0.01
933 2 0.00
934 1 0.00
935 2 0.00
936 3 0.00
937 6 0.00
938 5 0.00
940 4 0.00
941 3 0.00
942 3 0.00
943 6 0.00
944 8 0.00
945 3 0.00
946 6 0.00
947 7 0.00
948 1 0.00
949 1 0.00
950 140 0.02
951 4 0.00
952 1 0.00
955 3 0.00
957 1 0.00
962 2 0.00
963 1 0.00
964 5 0.00
965 1 0.00
969 2 0.00
971 4 0.00
972 2 0.00
973 13 0.00
974 2 0.00
975 14 0.00
976 349 0.05
977 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (888 bp):
GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCG
AGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
GCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGTCGCAA
CCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACG
AGCGGACGGGCGGGCGGGCACTACGCCGGCAAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
CCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAG
Found at i:18344664 original size:26 final size:26
Alignment explanation
Indices: 18344612--18344664 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18344602 CCGGTCCGAT
* *
18344612 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGAATGGGAATGAACTCCACATG
*
18344638 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCACATG
18344664 C
1 C
18344665 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCACATG
Found at i:18346404 original size:26 final size:26
Alignment explanation
Indices: 18346366--18346418 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18346356 CCAGTCTGAT
* * *
18346366 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18346392 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18346418 C
1 C
18346419 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18346587 original size:26 final size:26
Alignment explanation
Indices: 18346551--18346603 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18346541 CTGATCTGAT
*
18346551 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
18346577 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
18346603 C
1 C
18346604 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:18346655 original size:185 final size:185
Alignment explanation
Indices: 18346337--18346676 Score: 524
Period size: 185 Copynumber: 1.8 Consensus size: 185
18346327 GCCTGGCATG
* * * *
18346337 TGCTGTCGCAACCCTCGGTCCAGTCTGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTAG
1 TGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAG
* * *
18346402 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGTCGACCAGAGG
66 GAATGAACTCCCTATGCCTAAGTCAACCCACAAAACGAACGTGCGGGCGCTCAGCCGACCAGAGG
18346467 GGCGGGATGCGCAAG-CTGGGGATCGACCAGGTCCCTCTCCACGTGCTGCCGATCC
131 GGCGGGATGCGCAAGTC-GGGGATCGACCAGGTCCCTCTCCACGTGCTGCCGATCC
* *
18346522 TGCTGCCGCAACCCTCGAT-CTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
1 TGCTGCCGCAACCCTCGATCCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
* * *
18346586 GGAATGAACTCCCTATGCCTAAGTCAACCCACAAAACGAGCGTGCTGGTGCTCAGCCGGA-CAGA
65 GGAATGAACTCCCTATGCCTAAGTCAACCCACAAAACGAACGTGCGGGCGCTCAGCC-GACCAGA
18346650 GGGGCGGGATGCGCAAGTCGGGGATCG
129 GGGGCGGGATGCGCAAGTCGGGGATCG
18346677 GTTGAGTCCC
Statistics
Matches: 140, Mismatches: 12, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
184 2 0.01
185 135 0.96
186 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (185 bp):
TGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAG
GAATGAACTCCCTATGCCTAAGTCAACCCACAAAACGAACGTGCGGGCGCTCAGCCGACCAGAGG
GGCGGGATGCGCAAGTCGGGGATCGACCAGGTCCCTCTCCACGTGCTGCCGATCC
Found at i:18349148 original size:26 final size:26
Alignment explanation
Indices: 18349119--18349171 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18349109 CCGATCCAAT
18349119 CTTAGATTGAGAATGAACTCCGTATG
1 CTTAGATTGAGAATGAACTCCGTATG
* *
18349145 CTTATATTGGGAATGAACTCCGTATG
1 CTTAGATTGAGAATGAACTCCGTATG
18349171 C
1 C
18349172 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGATTGAGAATGAACTCCGTATG
Found at i:18349778 original size:26 final size:26
Alignment explanation
Indices: 18349749--18349801 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18349739 CCGGTCCGAT
18349749 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18349775 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18349801 C
1 C
18349802 CTAAGTCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18351889 original size:26 final size:26
Alignment explanation
Indices: 18351812--18351890 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
18351802 CTGGTCCGAT
* *
18351812 CTTAGACTAGGAATGAACTCCGTATT
1 CTTAGACTGGGAATGAACTCCGTATG
*
18351838 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18351864 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18351890 C
1 C
18351891 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18354180 original size:883 final size:903
Alignment explanation
Indices: 18353646--18355363 Score: 2296
Period size: 917 Copynumber: 1.9 Consensus size: 903
18353636 GGGATCGATC
* * * *
18353646 GGGTCCCCTTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCAGTCCGGTTCAATCTTAGACTG
1 GGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTC-GTTCGGTTCAATCTTAGACTG
* * ** *
18353711 GGAATGAACTCTGTATGCCTAAGCCAACAGGCGAAACAACTGGGCGGGCGGGTGGGCGGGCACTA
65 GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAC-GGGCGGGCGGGAGGGCGGGCACTA
*
18353776 CGTCGGCCAGAGAGACGAGATGCGCAAGCCATGGATCAATAGGGTGG-ATGGTGGGTTTAGGCAC
129 CGTCGGCCAGAGAGACG-GATGCGCAAGCCATGGATCGATAGGGTGGTA-GGTGGGTTTAGGCAC
* *
18353840 ATCTTCATATTTCTACATACCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAA
192 ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
18353905 GCCTTCCCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAACCTTTC
257 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAA-CTTTT
*
18353970 TACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGAT
321 TACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
18354035 CCTTGTATTTTTGTTGGAATGCACAAAAAAATTCATCTAAAAACTCGAAGTGTACAAGATTTTGT
386 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGT
*
18354100 GACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCAACTGGCAGCAAACCTGTAAAA
451 GACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
18354165 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAGTATAA
516 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
18354230 GGGCCAAGTACCAGCACCCATCGCACATCATATGCGTACA--CCCCCTGGCCCCCCCGATCATCG
581 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCT-GCCCCCCCGATCATCG
* * * * * *
18354293 AAACCCCAATGCTGTCGGTTAGGTACTC--CG--G-T-----GATGCTGCCCCGACGAAAAAAAA
645 GAACCCCAATGCGGTCGGTCAGGTTCTCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
** *
18354348 TGCGGCACCAGCACATGCCTAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCAATCTTA
710 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTA
* * ** * * * *
18354413 GACTGGGAATGAACTCCATATG-CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGA
775 GACTGGGAATGAACTCCATATGCCTAAGACAGCCAATGAAC-ACAGATGCGTAGACTGGG-ACG-
*
18354477 ACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGTTCAGCCGACAGAGGGACGGGA
837 ACTTCG-ATGCC-AAG---A-CCACG-AATGAGCGTGCGGGTGTACA-CCGACAGAGGGA-GGGA
18354542 TGCGCAAGTCGGGGATCGG
893 TGCG-AA------G-TCGG
* * * * * * *
18354561 TCGGGTCCCCCTCTATGTGCTGCCGATCTTGGTACCGCAACCCTCGATTCGGTCCAATCTCAGAC
1 --GGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCG-TTCGGTTCAATCTTAGAC
* * * * *
18354626 TGGGAATGAACTCCGTATGCCTAAACCAACCGATGAAACGACCGGGCGGACGGGCGGGTGGGCAC
63 TGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC-AACGGGCGGGCGGGAGGGCGGGCAC
* * *
18354691 TACGTCGGCCAGAGAGACTGGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTA
127 TACGTCGGCCAGAGAGAC-GGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
18354756 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATTGCTTGTAAATTCATACAATGGTCCCTTA
191 CATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
18354821 AGCCTTCACGTGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTT
256 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTCAAACTTT
** * *
18354886 TTACGGTTCAAGATTTTTTAAAATTTTTCCAGAAGGAGTTTTGGCACCAAACTTGGTAGACGTGA
320 TTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
*
18354951 TCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAACTAAAAAATCGAAGTGTACAAGATTTTG
385 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTG
* * * *
18355015 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGTAGCAAACTTGTAAA
450 TGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
18355080 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
515 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * *
18355145 AGGGCCAAGTACCAGCACCCATAGCACATCAAGTGCGCACACCCCCCCAGTCCCCCCGATCATCG
580 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCTGCCCCCCCGATCATCG
* * *
18355210 GAACCCCAATGCGGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGGAGAAAA
645 GAACCCCAATGCGGTCGGTCAGGTTCT-CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
* ** * ** *
18355275 ATGCGGTACCAGCACATGGTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTAGTCCGATCTT
709 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTT
18355340 AGACTGGGAATGAACTCCATATGC
774 AGACTGGGAATGAACTCCATATGC
18355364 TTAGATTGGG
Statistics
Matches: 710, Mismatches: 72, Indels: 26
0.88 0.09 0.03
Matches are distributed among these distances:
916 200 0.28
917 393 0.55
918 17 0.02
920 1 0.00
922 1 0.00
923 1 0.00
928 97 0.14
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (903 bp):
GGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGTTCGGTTCAATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAACGGGCGGGCGGGAGGGCGGGCACTACG
TCGGCCAGAGAGACGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAACTTTTTACGG
TTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
TATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCTGCCCCCCCGATCATCGGAACCC
CAATGCGGTCGGTCAGGTTCTCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGG
GAATGAACTCCATATGCCTAAGACAGCCAATGAACACAGATGCGTAGACTGGGACGACTTCGATG
CCAAGACCACGAATGAGCGTGCGGGTGTACACCGACAGAGGGAGGGATGCGAAGTCGG
Found at i:18354487 original size:26 final size:26
Alignment explanation
Indices: 18354409--18354479 Score: 142
Period size: 26 Copynumber: 2.7 Consensus size: 26
18354399 CCGATCCAAT
18354409 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18354435 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18354461 CTTAGACTGGGAATGAACT
1 CTTAGACTGGGAATGAACT
18354480 TCGTATGCCT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18363616 original size:26 final size:26
Alignment explanation
Indices: 18363587--18363639 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18363577 TTGGTCCGAT
*
18363587 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
18363613 CTTAGACTGGCAATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
18363639 C
1 C
18363640 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:18365391 original size:26 final size:26
Alignment explanation
Indices: 18365362--18365412 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18365352 CCGGTCTGAT
*
18365362 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
18365388 CTTAGAATAGGAATGAACTCCGTAT
1 CTTAGAATAGGAATGAACTCCGTAT
18365413 TCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGAATAGGAATGAACTCCGTATG
Found at i:18366310 original size:26 final size:26
Alignment explanation
Indices: 18366274--18366326 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18366264 GCGGTCCGAT
*
18366274 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18366300 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18366326 C
1 C
18366327 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18367211 original size:26 final size:26
Alignment explanation
Indices: 18367175--18367227 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18367165 TCGATCTGAT
18367175 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18367201 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18367227 C
1 C
18367228 CTAAGTCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18368723 original size:899 final size:898
Alignment explanation
Indices: 18362713--18373451 Score: 13860
Period size: 899 Copynumber: 12.0 Consensus size: 898
18362703 CTGGTCCGAT
* * * **
18362713 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCAAGATACGAGCGTGCGGGCGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** ** * * *
18362778 CGACCAGAGGGGCGGGATGCGCAAGTAG-GGATCGGTCGGGTCCCCCTCTATGTTCTAGCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTATCGATCC
* * * *
18362842 TGCTATCGCAACCCTCAATTTGATC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18362906 CCGACGAATCGAGCAGGCATGCAAGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAA
196 CCGACGAAACGAGCAGGC--G--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
18362971 GCCGTGGATCGATAGGGTGGTAGGAGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
18363036 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
18363101 GACTCGTTTTCTATTTTTCACGA-TTTCGAAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTT
387 GACTCGTTTTCTATTTTTCATGATTTTCG-AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* *
18363165 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTCTTTTTGTTGGCATGCGCAAA
451 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
18363230 AACATTCGGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
18363295 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
18363360 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATCGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
18363425 TAATGTGAGTACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTTAGGTTCTCCA
711 TCATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * ** * ** *
18363490 ACGATGCTCCGACGATGGTG-CCCTAGCGAAGAAAAACGCGACAGTAGCACATTCCTAAGCCTAG
776 ACGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * *
18363554 CATTTACTGTCGCAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
840 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * ** *
18363613 CTTAGACTGGCAATGAACTCTGTATGCCTAAGTTAACCCATGAAACGAACGTGCGGGAACTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18363678 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATC-AGTCGGGTCCCCCTCTACGTGCTGTC-ATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGA-CCGGGTCCCCCTCTACGTGCTATCGATC
* * *
18363741 CTGCTACCGTAACCCTC-AGTCCAGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
130 CTGCTACCGCAACCCTCGA-TTCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* *
18363804 CAACCGACGAAACGAGC-GGAAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAA
193 CAACCGACGAAACGAGCAGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
18363868 GCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
18363933 TTTTTATGGCTTGTAATTTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
18363998 GACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
387 GACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
*
18364063 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTCTGTTGGCATGCACAAAA
452 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
18364128 ACATTCTGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCGATTTG
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
18364193 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
18364258 TTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCGATCG-ACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
18364322 CATGTGCGCACACCCCCCCCGCCCCCCCGATCGTCGAAATCTCAAGGCCGCCAGTCAGGTTCTCC
712 CATGTGCGCACA--CCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * *
18364387 GGCGATGCTCCGGCGATGGTGCCCCGAC---GAAAAA------A--A--ATATG-GC-A--CTAG
775 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * ** * * * * *
18364435 CATGTGTTGTCAAAACCCTCGGTTTAGTCCAATCTTAGACTGGGAATGAACTTCGCATG
840 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** * * **
18364494 CTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAAAACACAAAATGAGCGTATGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*** * * * * * * * * * *
18364559 TAACCAGAGAGGCAGGATGCACAAGTCGGGGATCGACCTGGTCCCCCTCTGCATGCTGTCGATGC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTATCGATCC
* * *
18364624 TGCTGCCGCAACCCTC-AATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
131 TGCTACCGCAACCCTCGATTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
18364688 ACCGACGAAACGAGCGGGCGAGCCGGCGGGCACTATGCCGGCCAAAGAGACGGGACGCGCAAGCC
195 ACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
18364753 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCACTGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
18364818 TTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * ** *
18364883 TCGTTTTCTATTTTTTACGACTTTCGAAACTTTTTATGGTTCGGGATTTTTTAAAA-TTTTTCGA
390 TCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* **
18364947 AAGGAATTTTGTTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
18365012 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGA
520 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
18365077 CACTTTAATGGCTACTGGCAGCAAATCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
585 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
18365142 TCAAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
650 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
** * *
18365207 GTGCGCACA-CCCCCG--GTCCCGATCGTCGGAACCCCAATGCAGTCGGTCAGGTTCTCCGACGA
715 GTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
* * * * * * * * **
18365269 TCCTCTGGCGATGGTGTCGCGATGAAGAAAAATGCGGCACCAGCATATGCCTGAGCCCAATATGT
780 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * *
18365334 GCTGCTGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATG
845 GCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
18365388 CTTAGAATAGGAATGAACTCCGTATTCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18365453 CGGCCAAAGGGG-GGGATGCGCAAGCC-AGGGATC-AGTCGGGTCCCCCTCTCCGTGCT-GCTGA
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGA-CCGGGTCCCCCTCTACGTGCTATC-GA
* * * *
18365514 TCCTACTACCACAACCCTC-ATTCTGGTCAGATCTTAGAGTGGGAATGAACTCCGTATGCCTAAG
128 TCCTGCTACCGCAACCCTCGATTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
18365578 CCAACAGACGAAACAAGCGGCAGGCAGGCGAGCGGGCGGGCGGGCACTACACCAGCCAGAGGGAC
192 CCAACCGACG--A-AA-C-G-A-GCA---G-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC
*
18365643 GGGATGCGCAAGCCGTGGATCGATACGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGC
246 GGGATGCGCAAGCCGTGGATCGATA-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
18365708 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTT
310 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * *
18365773 TCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTATTGCGGTTTGGGATTTT
375 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTT
* * * * *
18365838 TCAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACATGATCCTTTTATTTTCGTTG
440 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
18365903 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
505 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
18365968 TGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACTTGTAAAATCTCAAATGCTCTTTA
570 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
18366033 AGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATGGGGGGCCAATATAAGGGCCAAGTACCAGCA
635 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * *
18366098 CCTATCACACATCATGTGTGCACAGCCCCCCCGACCCCCTCGATCGCCGGAACCCCAATGCCGCC
700 CCCATCGCACATCATGTGCGCACA--CCCCCCG-CCCCCCCGATCGTCGGAACCCCAATGCCGCC
* * * * *
18366163 TGTCAAGTTCTCCGACGGTGCTCCGACGATGGTGCCCCGAAGAAGAAAAATGCTGCACCAGCACA
762 GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
*
18366228 TGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTGC-GGTCCGATCTTAGACTGGGAATGAAC
827 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAAC
*
18366292 TTCGTATG
891 TCCGTATG
* *
18366300 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * * ** *
18366365 CGGCTAGAGGGGCAGGATGCATAAGCC-AGGGATCGATCGGGTCACCCTATGTGTGCTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGACCGGGTCCCCCTCTACGTGCTATCGATC
* * * * *
18366429 CTGCTACCACAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*** * * * * *
18366494 AGTAACAAAACGAGCGGGCGGGCAGGCAGGAGGGCACTATGCCAGCCAGAGAGACGGGATGCGCA
195 ACCGACGAAACGAGCAGGCGGGC--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * **
18366559 AGCTGTGGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
18366624 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** *
18366689 CGACTCGTTTTCTA-TTTTCAAGATTTTCGAAACTTTTTAAGGTTCGAGATTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * * * * *
18366753 TCAGAAGGAGTTTTGGCCCCAAACTTGGTTGATGTGATCCTTGTATATTTGTTGCCAAGCAC-AA
451 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18366817 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTGCCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
18366882 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
18366947 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGACAAGTACCAGCACCCATTGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
18367012 TCATGTGCGCACACCCCCCGACCCCCCCGATCGCCGAAACCCCAATGCCGCTGGTTACGTTCTCC
711 TCATGTGCGCACACCCCCCG-CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *
18367077 GACAATGCTCCGACGATGGTTCCCCGACGAAGAAAAATGTGGCACCAGCACATGGCCGAGCCCAG
775 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
** * * * * *
18367142 CATGTGCTATCGTAACCATCAGT-TCGATCTGATCTTAGACTGGGAATGAACTCCGTATG
840 CATGTGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** *
18367201 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAAACACGAAACGAGCGTGCGGGCCCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** *
18367266 CGGCCAGAGGGG-GGGATGCGCAAGCC-AGGGATC-AGCCGGATGCCCCTCTATGTGCTGCCAAT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGA-CCGGGTCCCCCTCTACGTGCTATCGAT
* ** * *
18367328 CCTGCTGCTACAACCCTCGGTCCGGTCCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
129 CCTGCTACCGCAACCCTCGATTCGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
18367392 CAACCGACGAAAC--G-A-GCGGGCAGGCGGGCACTACGCCGGCCAAAGAGATGGGATGCGCAAG
193 CAACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* ** * **
18367453 CCCTGGATTAATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTGTGTGCCAATGCCAT
258 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
** * * *
18367518 TTTTATGGCTTCCAAATTCATACAATGGTCCCTTAAGTCTTCATGTGAAGTTTCATTGCAAGACG
323 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ** * * * *
18367583 ACTCGTATTCTATTTTTCACAATTTTC-AAAATGTTTTGCGGTTTGAGATTTTTTAAAATTCTTT
388 ACTCGTTTTCTATTTTTCATGATTTTCGAAACT-TTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * *
18367647 CAGAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGCTGGCATGCACAAAA
452 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
18367712 AAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
18367777 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
18367842 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAACAGCACCCATCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
18367907 CATGTGCGCATACCCCCCAGCCCCCCCGATCGTCGGAACCCCAATACCGCCGGTCAGGTTCTCCG
712 CATGTGCGCACACCCCCC-GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** * * *
18367972 ACGATGCTCCGGGGATGGTGCCCCGACGAAGAAAAATGGGGCGCCAGCACATGCCCGAGCCCAAC
776 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * *
18368037 ATGTGCTACCGTAACCCTCAGTCTGGTCCGATCTTAGATTGGGAATGAACTCTGTAAT-
841 ATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT-ATG
* *
18368095 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
18368160 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCAACCGAGTCCCCCTCTACGTGCTATCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTATCGATCC
* * *
18368225 TGCTCCCAG-AACCCTCGATTCGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
131 TGCTACC-GCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
18368289 ACCAACGAAACGAGCAGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATACGCAAGCC
195 ACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * ** **
18368354 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTGATATTTCTGTGTGCCAATAACATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
18368419 TTATGGTTTGTAAATTCATACAATGGTCCCCTAAGCCTTCAGGTGAAGTTTCATGGCAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * ***
18368484 TCGTTTTCTATTTTTCATGATTTTTGAAACATTTTGCAGTTCTGGATTTTTTAAAATTTTTTAAA
390 TCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * *
18368549 AAGGATTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAC
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-
*
18368614 TTTC-GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
** * * *
18368678 ACACTTTAATTCCTACTGGTACCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
18368743 CTCGAGGTTTGACGAGGGATAGGGTGCCAATATAAGGGCCAAGTCCCAGCGCCCATCGCACATCG
649 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA--G--CA-C-C-CATCG
* *
18368808 CACATCATGTGCACACACCCTTCCCGGCCCCCCCGATTG-CTGGAACCCCAATGCCGCCGGTCAG
707 CACATCATGTGCGCACACCC--CCC-GCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAG
* ** *
18368872 GTTCT-C--CGA---T-----GATGGTGCCCCGATGAAGAAAAATATGCCACCAGCACAT-CCTC
768 GTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC-C
* * * *
18368925 GAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCATAGACTGGGAATGAACTCCATA
832 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
18368990 TG
897 TG
* * *
18368992 CTTGGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** * * *
18369057 TGGCCAGAGGGGCGGGATGAGCAAGTCGGGGATCGGTCGGGTCCCCTTCTGCATGCTA-CTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTATC-GATC
* * * * * * * *
18369121 TTGCTGCCACAACCCTCGGTCCAGTCTGATCTTAGGCTGGGAATGAAATCCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * **
18369186 ATCGACGAAATGAGTGGGAGGGCGGGCGGGCAGGTGGGCACTATACCGGCCAGAGAGACGGGATG
195 ACCGACGAAACGA---GCA-GGCGGGCGGGC----GGGCACTACGCCGGCCAGAGAGACGGGATG
* **
18369251 GGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAA
252 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
18369316 TGCGATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
317 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * *
18369381 AAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTGCGGGATTTTTTAAAAT
382 AAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAAT
* * * *
18369446 TTTTTTGGAAGTATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTGTTGGCATGCA
447 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
18369511 CAAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGGGTCCCC
512 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
18369576 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGT
577 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
18369641 ATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCA
642 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
18369706 CACATCATGTGCAG-ACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCC-G--A--
707 CACATCATGTGC-GCACA-CCCCCC-GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
* * ** *
18369765 TGCTCCGACGATGTTGCC--C--TGGT--------GAAGAAAAATGCAACACCAGCACATGCTCG
769 TTCTCCGACGATGCT-CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
*
18369818 AGCCCAGCATGTGCTGTCGCAA-CC-C--T-T-G---G-TC-----C--GG--T---CT--G-A-
833 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
*
18369857 C
898 G
* * * *
18369858 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCATGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18369923 CGGCCAGAGGGGTGGGATGCGTAAGCTGAGGATCGGCCGGGT-CCCC-CT-C-TGC-AT-G---C
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTATCGATCC
* * * *
18369979 TGCT---GCAACCCTCG-GTCTGTTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGCCA
131 TGCTACCGCAACCCTCGATTCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * ** *
18370040 ACAGACGAAACGAGCGGGTGGGTGGGCGGGCGGCCACTACGCCTACCAGAGAGACAGGATGCGCA
195 ACCGACGAAACGAGC----AGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
18370105 AGCCGTGCATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
18370170 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGGAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * **
18370235 CGATTCCTTTTTTATTTTTCATGATTTTCGAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
*
18370300 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTCTGTTGGCATGCACAAA
451 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
18370365 AACATT-ATGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCATT
516 AAAATTCA-GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
18370429 TCAGACACTTTAATGGCTACTGGCAGCACACCTGTAAAATCTCAAATGCTCTTTAAAGAGGTGTG
580 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
18370494 AGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAGTATAAGGGCTAAGTACTAGCACCCATCGCAC
645 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
18370559 ATCATGTGCGCACACCCCCCTGGCCCTCCGATCGTTGGAACCCCAATGCCGCCGATCAGGTTCTT
710 ATCATGTGCGCACACCCCCC-GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * *
18370624 CGATGATGCTCCGATGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGGCCGAGCCCA
774 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
18370689 GCATGTGCTGCCAG-AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATAAATTTCGTATG
839 GCATGTGCTGCC-GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
18370749 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * ** *
18370814 TGACCAGAAGGGCGGGATGCACAAGTCGGGGATCGATCGGGTCACCCTCTACGTTCTGCCGATTC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTATCGATCC
* * * * * * * ** *
18370879 TGTTGCCGTAACCCTTGATTTGGTGC-GATCTTAGATTAGGAATGAACGGCATATGCCTAAGCCA
131 TGCTACCGCAACCCTCGATTCGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
18370943 ACCGACGAAACAAACGGGCGGGCGGGCGGGCGA-TACGCCGGCTAGAGAGACGGGATGCGCAAGC
195 ACCGACGAAACGAGCAGGCGGGCGGGCGGGC-ACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
*
18371007 CGTGGATCGATAGGGTGGTAGGTGGGTTGAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
259 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
18371072 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTG-AGTTTCATGGCAAGACG
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG-TGAAGTTTCATGGCAAGACG
* * * * ** * *
18371136 ACTCGTTTTCTATTTTTAACGATTTTTGAAACATTTTATGGTTTGGGATTTTTTAAAATTTTTTT
388 ACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
* * * * *
18371201 GAAAGGCGTTTTGGCCCCAAAATTGGTAGTCGTGATCCTTGTATTTTTGTTGGCATGCATAAAAA
453 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
18371266 AATTCAGCTAAAAACTCGAAGTGGACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATCTCA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
18371331 GACACTTTCATGGCTATTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
18371396 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCTCATT
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* **
18371461 ATGTGCGCACACCCCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
713 ATGTGCGCACA--CCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * *
18371526 ACGATGCTCCGGCGATGGTGCCCCAACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
776 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * *
18371591 AAGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATG
841 ATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18371649 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** *
18371714 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGTGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTATCGATCC
* * * * * * ** *
18371779 TACTTCCGTAACCCTTGGTTTGGTCCAATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
18371844 CCGATGAAATGAATGGGCGGGCAGGCGGGCGGGCACTACGTCGGCTAGAGAGACGGGGTGCGCAA
196 CCGACGAAACG-A---GCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
18371909 ACCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCGGCATGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * *
18371974 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTGACCCATCACTTGAAGTTTCATGGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
18372039 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
387 GACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * *
18372104 CGAAAGGCGTTTTGGCCCCAAAATTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
452 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
18372169 AACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
18372234 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
18372299 TTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
18372364 CATGTGCGCACACCCTCCTGCCCCCCCGAACGCCGGAACCCCAATGCCGTCGGTTAGGGTCTCCG
712 CATGTGCGCACACCC-CCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** * * *
18372429 GTGATGCTCCGGCGATAGTGCCCAGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
776 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * *
18372494 ATGTGCTGCTGCAACCCTCAGT-TCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
841 ATGTGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18372552 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * * *
18372617 CAGCCAGAGGGGCGGGATATGCAAGCTGGGGAACGACCGGGTCCCCCTGTACGTGTTTTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTATCGATCC
* * * * * ** * * *
18372682 TGCTGCTGCAACCCTCGGTCCAGTCCAATCTTAGACTAGGAATGAACTCCATATGACTAAGCCAA
131 TGCTACCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** *
18372747 CCGATGAAACGAGCAGGCGGGCGGGCGAGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCA
196 CCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
18372812 TGGATCGGTAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTTTGCATGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
18372877 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
18372942 CGTTTTCTATTTTTCATGATTTACGAAACTTTTTGCGGTTCCGGATTTTTTAAAATTTTTTTGGT
391 CGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * * *
18373007 AGGATTTTTGGCTCCAAACTTGGAAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAAT
456 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
** * *
18373072 TCAGCTAAAAAAACAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGAC
521 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
18373137 ACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGATTTTTAATGGGGTGTGAGTTCT
586 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
18373202 CGAGCTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
651 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* ** *
18373266 TGCGGACACCCACCCTAG-CCCCCCGATCACCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
716 TGCGCACACCC-CCC--GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* * * ** * * *
18373330 GATGCTCCGACGATCGTGCACCGACGAAGAAAATTATGGCAACAGCACATTCACGAGCCCAGCAT
778 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* *
18373395 GTGCTGCCGCAACCCTCCGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
843 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
18373451 C
1 C
18373452 CTAAGCCAAC
Statistics
Matches: 8633, Mismatches: 1000, Indels: 413
0.86 0.10 0.04
Matches are distributed among these distances:
849 37 0.00
850 453 0.05
851 1 0.00
852 1 0.00
853 6 0.00
854 75 0.01
857 8 0.00
860 1 0.00
861 1 0.00
862 3 0.00
863 1 0.00
864 2 0.00
865 47 0.01
866 95 0.01
867 2 0.00
869 1 0.00
870 2 0.00
871 1 0.00
873 1 0.00
874 1 0.00
875 4 0.00
877 56 0.01
879 6 0.00
880 7 0.00
881 396 0.05
882 309 0.04
883 5 0.00
884 1 0.00
885 3 0.00
886 2 0.00
887 2 0.00
888 2 0.00
889 2 0.00
890 7 0.00
891 93 0.01
892 219 0.03
893 197 0.02
894 534 0.06
895 121 0.01
896 29 0.00
897 764 0.09
898 148 0.02
899 1469 0.17
900 550 0.06
901 321 0.04
902 11 0.00
903 589 0.07
904 632 0.07
905 719 0.08
906 332 0.04
907 3 0.00
908 43 0.00
909 7 0.00
910 2 0.00
911 1 0.00
912 206 0.02
913 98 0.01
914 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTATCGATCC
TGCTACCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:18370772 original size:26 final size:26
Alignment explanation
Indices: 18370723--18370775 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18370713 CCGGTCCGAT
* *
18370723 CTTAGACTGGGAATAAATTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
18370749 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18370775 C
1 C
18370776 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18371652 original size:26 final size:26
Alignment explanation
Indices: 18371623--18371675 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18371613 CCGGTCCGAT
*
18371623 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18371649 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18371675 C
1 C
18371676 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18372562 original size:26 final size:26
Alignment explanation
Indices: 18372526--18372578 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18372516 TCGGTCCAAT
*
18372526 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18372552 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18372578 C
1 C
18372579 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18374169 original size:719 final size:714
Alignment explanation
Indices: 18372689--18374170 Score: 2243
Period size: 719 Copynumber: 2.1 Consensus size: 714
18372679 TCCTGCTGCT
* * * * *
18372689 GCAACCCTCGGTCCAGTCCAATCTTAGACTAGGAATGAACTCCATATGACTAAGCCAACCGATGA
1 GCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* *
18372754 AACGAGCAGGCGGGCGGGCGAGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCG
66 AACGAGCAGACGGGCGGGCGAGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCG
* *
18372819 GTAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCT
131 ATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
18372884 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
196 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * *
18372949 TATTTTTCATGATTTACGAAACTTTTTGCGGTTCCGGATTTTTTAAAATTTTTTTGGTAGGATTT
261 TATTTTTCACGATTTACGAAACTTTTTGCCGTTCCGGATTTTTTAAAATTTTTTCGGAAGGAGTT
*
18373014 TTGGCTCCAAACTTGGAAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTCAGCTA
326 TTGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTCAGCTA
* *
18373079 AAAAAACAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAA
391 AAAAAACAAAGTGTACAAGATTTTGCGACCATTTGAAAAAAATATCCCCATTTCAGACACTTTAA
* * * *
18373144 TGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGATTTTTAATGGGGTGTGAGTTCTCGAGCTT
456 TGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGATGTTTAAGGGGGTATGAGTTCTCAAGCTT
*
18373209 TGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGACA
521 TGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
*
18373274 CCCACCCTAGCCCCCCGATCACCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG
586 CCCACCCTAGCCCCCCGATCACCAGAACCCCAATGCCGCCGGTCAGGTTATCCGACGATGCTCCG
* * * *
18373339 ACGATCGTGCACCGACGAAGAAAATTATGGCAACAGCACATTCACGAGCCCAGCATGTGCTGCC
651 ACGATCGTGCACCGACGAAGAAAAATATGGCAACAGCACATGCACGAGCCCAACATGTGCTACC
* * **
18373403 GCAACCCTCCGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
1 GCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
18373468 AACGAGCGGACAGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
66 AACGA---G-CAGACGGGCGGGCGAGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGG
* *
18373533 ATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
127 ATCGATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
18373598 GGCTTGTAAATTCATAGAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
192 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *** *
18373663 TTTCTATTTTTTACGATTTTTTAAACTTTTTGCCGTT-CGAGATTTTTTTAAATTTTTTCGGAAG
257 TTTCTATTTTTCACGATTTACGAAACTTTTTGCCGTTCCG-GATTTTTTAAAATTTTTTCGGAAG
* *
18373727 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTCTTTTGGCATGCACAAAATAATT
321 GAGTTTTGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTT-TTTTGGCATGCACAAAACAATT
** *
18373792 CAGCTAAAAACTCAAAGTGTACAAGATTTTGCGACCATTTGAAAAAAAT-TGCCCCATTTTAGAC
385 CAGCTAAAAAAACAAAGTGTACAAGATTTTGCGACCATTTGAAAAAAATAT-CCCCATTTCAGAC
* * *
18373856 ACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTGTTTAAGGGGGTATGAGTTCT
449 ACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGATGTTTAAGGGGGTATGAGTTCT
*
18373921 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
514 CAAGCTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* ** * *
18373986 TGCGCACACCC-CCC-GGCCCCTCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTATCCGGC
578 TGCGCACACCCACCCTAGCCCC-CCGATCACCAGAACCCCAATGCCGCCGGTCAGGTTATCCGAC
* ** * * * * *
18374049 TATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAACAT
642 GATGCTCCGACGATCGTGCACCGACGAAGAAAAATATGGCAACAGCACATGCACGAGCCCAACAT
*
18374114 GTTCTACC
707 GTGCTACC
* *
18374122 GCAACACTCGGTCCGGTCCAATCTTAGACTGGGAATGAATTCCGTATGC
1 GCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
18374171 TTACACTGGG
Statistics
Matches: 687, Mismatches: 72, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
714 61 0.09
717 3 0.00
718 271 0.39
719 297 0.43
720 55 0.08
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (714 bp):
GCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
AACGAGCAGACGGGCGGGCGAGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCG
ATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCACGATTTACGAAACTTTTTGCCGTTCCGGATTTTTTAAAATTTTTTCGGAAGGAGTT
TTGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTCAGCTA
AAAAAACAAAGTGTACAAGATTTTGCGACCATTTGAAAAAAATATCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGATGTTTAAGGGGGTATGAGTTCTCAAGCTT
TGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCACCCTAGCCCCCCGATCACCAGAACCCCAATGCCGCCGGTCAGGTTATCCGACGATGCTCCG
ACGATCGTGCACCGACGAAGAAAAATATGGCAACAGCACATGCACGAGCCCAACATGTGCTACC
Found at i:18374173 original size:26 final size:26
Alignment explanation
Indices: 18374144--18374196 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18374134 CCGGTCCAAT
* *
18374144 CTTAGACTGGGAATGAATTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
18374170 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18374196 C
1 C
18374197 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:18375704 original size:26 final size:26
Alignment explanation
Indices: 18375675--18375727 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18375665 CTGGTCCGAT
* *
18375675 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
18375701 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
18375727 C
1 C
18375728 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:18376506 original size:396 final size:384
Alignment explanation
Indices: 18375786--18376536 Score: 1056
Period size: 396 Copynumber: 1.9 Consensus size: 384
18375776 GGCAGGATGC
* * *
18375786 GCAAGTCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGTTGCCTCAACCCTCAGTC
1 GCAAGTCAGGGATCGGTCCGGTCCCCCTCTGCGTGCTGCCGATCTTGTTGCCGCAACCCTCAATC
18375851 TCGTCCGATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCGATGAAACGAGCGGGCAC
66 TCGTCCGATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCGATGAAACGAGCGGGCAC
* * * * * ** * *
18375916 TACGCCGACCAGAGGGGCGGGATGCATAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAA
131 TACACCGACCAGAGAGACGGGATACACAAGCCATGGATCAATAGGGTGGTAGGTGGGATTAGGAA
** *
18375981 CATCTTCGTATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
196 CATCTTCAAATTTCTGCATGCCAAAGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
18376046 AGCCTTGATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTT
261 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
*
18376111 TTACGGTTCGAGATTTTTTAAAATTTTTTCGGAACAAGTTTTGGCCCTAAACTTATTGT
326 TTACGGTTCGAGATTTTTCAAAATTTTTTCGGAACAAGTTTTGGCCCTAAACTTATTGT
18376170 GCAAGTCAGGGATCGGTCCGGTCCCCCTCTGCGTGCTGCCGATAC-TGTTGCCGCAACCCTCAAT
1 GCAAGTCAGGGATCGGTCCGGTCCCCCTCTGCGTGCTGCCGAT-CTTGTTGCCGCAACCCTCAAT
* * * *
18376234 CTGGTCTGATCTTAGACTGGGAATGAAC-TCTGTATGCCTAAGCCAACTGATGAAACGAGCGGAC
65 CTCGTCCGATCTTAGACTGGGAATGAACTTC-ATATGCCTAAGCCAACCGATG-AA--A-C-GA-
* * *
18376298 GGGCGGGCGGGCACTATACCGGCCAGAGAGACGGGATACGCAAGCCATGGATCAATAGGGTGGTA
123 ------GCGGGCACTACACCGACCAGAGAGACGGGATACACAAGCCATGGATCAATAGGGTGGTA
* * *
18376363 GGTGGGATTAGGCACATCTTCAAATTTTTGCATGCCAAAGCCATTTTTATGGCTTGTAAATTCAT
182 GGTGGGATTAGGAACATCTTCAAATTTCTGCATGCCAAAGCAATTTTTATGGCTTGTAAATTCAT
18376428 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
247 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** * * *
18376493 ATTTTTGAAACTTTTTATGGTTCGGGATTTTTCACAATTTTTTC
312 ATTTTCAAAACTTTTTACGGTTCGAGATTTTTCAAAATTTTTTC
18376537 AAAAGGAGTT
Statistics
Matches: 319, Mismatches: 34, Indels: 16
0.86 0.09 0.04
Matches are distributed among these distances:
383 2 0.01
384 104 0.33
385 3 0.01
387 1 0.00
388 1 0.00
389 2 0.01
396 206 0.65
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.30
Consensus pattern (384 bp):
GCAAGTCAGGGATCGGTCCGGTCCCCCTCTGCGTGCTGCCGATCTTGTTGCCGCAACCCTCAATC
TCGTCCGATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCGATGAAACGAGCGGGCAC
TACACCGACCAGAGAGACGGGATACACAAGCCATGGATCAATAGGGTGGTAGGTGGGATTAGGAA
CATCTTCAAATTTCTGCATGCCAAAGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
TTACGGTTCGAGATTTTTCAAAATTTTTTCGGAACAAGTTTTGGCCCTAAACTTATTGT
Found at i:18377321 original size:507 final size:506
Alignment explanation
Indices: 18376336--18377320 Score: 1549
Period size: 507 Copynumber: 1.9 Consensus size: 506
18376326 AGACGGGATA
*
18376336 CGCAAGCCATGGATCAATAGGGTGGTAGGTGGGATTAGGCACATCTTCAAATTTTTGCATGCCAA
1 CGCAAGCCATGGATCAATAGGGTGGTAGGTGGGATTAGGCACATCTTCAAATTTCTGCATGCCAA
* **
18376401 AGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
66 AGCCAATTTTATGAATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * ** *
18376466 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTCACAAT
131 AAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTTTTCAAAAT
* *
18376531 TTTTTCAAAAGGAGTTATGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
196 TTTTTCAAAAGGAGTTATGGCCCCAAACCTGGTAGACGTGATCCTTGCATTTTTGTTGGCATGCA
* * *
18376596 TAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCT
261 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTATGACCATTCGAAAAAAGTGTCCCC
18376661 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAAGGGGT
326 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAAGGGGT
* *
18376726 AAGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAGGGCCAGGTACCACCACCCATCGC
391 AAGAGTTCTGAAGGTTTGATGAGGGATAGGGGGCCAATATAGGGCCAAGTACCACCACCCATCGC
18376791 ACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGCGGGAACCCTAATG
456 ACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGCGGGAACCCTAATG
** * * * **
18376842 CGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAA
1 CGCAAGCCATGGATCAATAGGGTGGTAGGTGGGATTAGGCACATCTTCAAATTTCTGCATGCCAA
* * *
18376907 TGCCAATTTTATTAATTGTAAATTCTTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
66 AGCCAATTTTATGAATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* *
18376972 AAGACGACTCGTTTTCTATTTTTTACG-TTTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAA
131 AAGACGACTCGTTTTCTATTTTTCACGATTTTT-AAAACTTTTTACGGTTCAAGATTTTTCAAAA
** * *
18377036 TTTTTTCGGAAGGAGTTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGCATTTTTTTTGGCATG
195 TTTTTTCAAAAGGAG-TTATGGCCCCAAACCTGGTAGACGTGATCCTTGCATTTTTGTTGGCATG
* *
18377101 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCC
259 CACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTATGACCATTCGAAAAAAGTGTCC
* * *
18377166 CCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
324 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAAGGG
** * * * *
18377231 GTGTGAGTTCTGAAGGTTTGGTGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCGAT
389 GTAAGAGTTCTGAAGGTTTGATGAGGGATAGGGGGCCAATAT-AGGGCCAAGTACCACCACCCAT
18377296 CGCACATCATGTGCGCACACCCCCC
453 CGCACATCATGTGCGCACACCCCCC
18377321 GGTCCCCTGA
Statistics
Matches: 433, Mismatches: 43, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
505 5 0.01
506 180 0.42
507 204 0.47
508 44 0.10
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (506 bp):
CGCAAGCCATGGATCAATAGGGTGGTAGGTGGGATTAGGCACATCTTCAAATTTCTGCATGCCAA
AGCCAATTTTATGAATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
AAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTTTTCAAAAT
TTTTTCAAAAGGAGTTATGGCCCCAAACCTGGTAGACGTGATCCTTGCATTTTTGTTGGCATGCA
CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTATGACCATTCGAAAAAAGTGTCCCC
ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAAGGGGT
AAGAGTTCTGAAGGTTTGATGAGGGATAGGGGGCCAATATAGGGCCAAGTACCACCACCCATCGC
ACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGCGGGAACCCTAATG
Found at i:18378202 original size:26 final size:26
Alignment explanation
Indices: 18378166--18378218 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18378156 TTGGTTCAAT
*
18378166 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
18378192 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
18378218 C
1 C
18378219 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:18381250 original size:719 final size:718
Alignment explanation
Indices: 18379862--18382046 Score: 3491
Period size: 719 Copynumber: 3.0 Consensus size: 718
18379852 GTCCTATCAA
* * * *
18379862 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAATGACGAAACAAGCGGGAAGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGATACAAGCGGGAGGGCGGTCG
* * * * *
18379927 GGTGGGCACTACGCCGACCAAAGATAC-GTGATGCGCAAGCCGTGCATCGTTAGGGTGGTAGGTG
66 GGCGGGCACTACGTCGACCAAAGAGACAG-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * *
18379991 GGTTTAGGCACATCTTCATATTTTTTCATGCCAATGCCATTTCTATGGCTTGTAAATTCATAGAA
130 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
18380056 TGGT-CTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
195 TGGTCCT-TTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATT
** * * * *
18380120 TTCCAAACTTTTTGTGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
259 TTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
* * * * * * *
18380185 GGTAGGCATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGTTAAAAACTCGAAGTGT
324 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGGTACAAACTCGAAGTGT
* * *
18380250 ACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAAACACTTTAGTGGCTACTGGCAGC
389 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
18380315 AAACCTGTAAAATCTCAAATGCTCTTTAAAGGG-GTGTGAGTTCTCGAGGTTTAATGAGGGATAG
454 AAACCTGTAATATCTCAAATGCTCTTT-AAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * * *
18380379 GGGGCCAATATAAGGGCCAAGTGCCAGCATCCATTGCACATCATGTGCGCACACCCCCCCGGCCC
518 GTGGCCAATATAATGGCCAAGTACCAGCATCCATCGCACATCATGTGCGCACTCCCCCCCGGCCC
* * * * * * *
18380444 CCCCGATCGCCGGAACCCCAATGCTACTGGTCAGGTTCTCTGGCGATGCTCTGACGATGGTGCCC
583 CCCCGATCGTCGGAACCCCAATACCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCC
* *
18380509 CGACGAAGATAAATGCGGCACCAGCACATGCCCGAGCCTAGTATGTGCTACTGCAACCCTCGGTC
648 CG-TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGTATGTGCTACTGCAACCCTCGGTC
*
18380574 AGCTCTG
712 CGCTCTG
* *
18380581 ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGATACAAGCGGGAGGGCGGTCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGATACAAGCGGGAGGGCGGTCG
* *
18380646 GGCGGGCACTACGTCGACCAAAGAGACAGGATGCGCAAGCTGCGGATCGATAGGGTGGTAGGTGG
66 GGCGGGCACTACGTCGACCAAAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
18380711 GTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCATTTTTATGGCTTGAAAATTCATACAAT
131 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
18380776 AGTCCTTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTT
196 GGTCCTTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTT
18380841 TAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
261 TAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
*
18380906 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAAATCAGGCACAAACTCGAAGTGTA
326 TAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAAATCAGGTACAAACTCGAAGTGTA
18380971 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
390 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
18381036 AACCTTTAATATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGT
455 AACCTGTAATATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGT
*
18381101 GGTCAATATAATGGCCAAGTACCAGCATCCATCGCACATCATGTGCGCACTCCCCCCCGGCCCCC
520 GGCCAATATAATGGCCAAGTACCAGCATCCATCGCACATCATGTGCGCACTCCCCCCCGGCCCCC
* *
18381166 CCGATCGTCGGAACCCCAATACCACCGGTCAGGTTCTCCGGTGATGCTCCGATGATTGTGCCCCG
585 CCGATCGTCGGAACCCCAATACCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCG
*
18381231 TGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGTATGTGCTACTGCAACCCTCGGTCCGC
650 TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGTATGTGCTACTGCAACCCTCGGTCCGC
18381296 TCTG
715 TCTG
*
18381300 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGATACAAGTGGGAGGGCGGTCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGATACAAGCGGGAGGGCGGTCG
*
18381365 GGCGGGCACTACATCGACCAAAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
66 GGCGGGCACTACGTCGACCAAAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
**
18381430 GTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
131 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
18381495 GGTCCTTTAAGCCATCACTTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTT
196 GGTCCTTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTT
* * *
18381560 TGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
261 TAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
18381625 TAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATCAGGTACAAACTCGAAGTGTAC
326 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGGTACAAACTCGAAGTGTAC
18381689 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
391 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
18381754 ACCTGTAATATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTG
456 ACCTGTAATATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTG
* * *
18381819 GCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTTCGCACTTCCCCCCTGG-CCCC
521 GCCAATATAATGGCCAAGTACCAGCATCCATCGCACATCATGTGCGCAC-TCCCCCCCGGCCCCC
* ** * *
18381883 CCGATCGTCGGAACCCTAATACCTTCGGTCAGGTTCTCCGGTGATGCTCGGACAATGGTGCCCCG
585 CCGATCGTCGGAACCCCAATACCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCC-
* * *
18381948 GTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA-TCGTAACCCTCGGTCC
649 GTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGTATGTGCTACT-GCAACCCTCGGTCC
* *
18382012 GATCCG
713 GCTCTG
18382018 ATCTTAGACTGGGAATGAACTCCGTATGC
1 ATCTTAGACTGGGAATGAACTCCGTATGC
18382047 TTAGATTGGG
Statistics
Matches: 1361, Mismatches: 98, Indels: 15
0.92 0.07 0.01
Matches are distributed among these distances:
717 266 0.20
718 100 0.07
719 733 0.54
720 262 0.19
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.28
Consensus pattern (718 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGATACAAGCGGGAGGGCGGTCG
GGCGGGCACTACGTCGACCAAAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCTTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTT
TAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGGTACAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAATATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTG
GCCAATATAATGGCCAAGTACCAGCATCCATCGCACATCATGTGCGCACTCCCCCCCGGCCCCCC
CGATCGTCGGAACCCCAATACCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGT
GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGTATGTGCTACTGCAACCCTCGGTCCGCT
CTG
Found at i:18382071 original size:26 final size:26
Alignment explanation
Indices: 18382020--18382072 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18382010 CCGATCCGAT
*
18382020 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18382046 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
18382072 C
1 C
18382073 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18382957 original size:26 final size:26
Alignment explanation
Indices: 18382921--18382973 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18382911 ATGGTCCAAT
18382921 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18382947 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18382973 C
1 C
18382974 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18383149 original size:901 final size:896
Alignment explanation
Indices: 18381273--18383837 Score: 3784
Period size: 901 Copynumber: 2.9 Consensus size: 896
18381263 GCCTAGTATG
* * *
18381273 TGCTACTGCAACCCTCGGTCCGCTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCTGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
18381338 CTGACGATACAAGTGGGAGGGCGGTCGGGCGGGCACTACATCGACCAAAGAGACAGGATGCGCAA
66 CCGACG--A-AA-CGAGCGGGCGGGC-GGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAA
*
18381403 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
126 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* * *
18381468 TTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCATCACTTGAAGTTTCATGGCAAGAC
191 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
18381533 GACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTT
256 GACTTGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTT
18381598 C-AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
321 CGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
18381662 AAAATCAGGTACAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
385 AAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
18381727 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAATATCTCAAATGCTCTTTAAGGGTGTGTGAG
450 AGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGAG
** *
18381792 TTCTCGAGGTTTGATGAGGGATAGGTGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACAT
515 TTCTCGAGGTTTGATGAGGGATAGGAAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * **
18381857 CATGTTCGCACTTCCCCCCTGGCCCCCCGATCGTCGGAACCCTAATACCTTCGGTCAGGTTCTCC
580 CATGTGCGCAC-ACCCCCCTGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * **
18381922 GGTGATGCTCGGACAATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
644 GGCGATGCTCGG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * *
18381987 CATGTGCTATCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
708 CATGTGCTACCGTAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * ** *
18382052 TTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAACCGGCTA
773 CTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAACCAACCA
* *
18382117 GAGGGGCGGGATGCACAAGCCGGGGATCGGCCAGGTCCCCCTCTGTGTGCTGCCGATCC
838 GAGGGGCGGGATGCACAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGCCGATCC
* *
18382176 TGCTG-TCACAACCCTCGATCCAGTCTGA-CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCT-GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
18382239 ACCGACGAAACGAGCGGGCGGGCAGGCGGGCACAACGTCGGCCAGAGAGACGGGATGCGCAAGCC
65 ACCGACGAAACGAGCGGGCGGGC-GGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCC
* **
18382304 GTGGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGATATTT
129 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
* * *
18382369 TTATGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGATGAC
194 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
18382434 TTGTTTTTTTATTTTTCACGATTTTGGAAAC-TTTTACGGTTCGGGATTTTTTAACATTTTTTCG
259 TTG-TTTTCTATTTTTCACGATTTTCGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCG
*
18382498 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCATGCACAAAGAA
323 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA-AA
* *
18382563 AATCAGCTAAAAACCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCG
387 AATCAGCTAAAAA-CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
18382628 GACACTTTAATGGCTACTAGAAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGCGTGTGAGT
451 GACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGAGT
* * * *
18382693 TCTCGAGGTTTGATGAGGGATAGAAAGCCAATATAAGGGCAAAGTACCAGCACCCATCACATATC
516 TCTCGAGGTTTGATGAGGGATAGGAAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
18382758 ATGAGCGCACACCCCCCCTGGCCCCCTCGATGGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCC
581 ATGTGCGCACA-CCCCCCTGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * *
18382823 GACGATGCTCTGGCGATGGTGCCCCGACGAAGAAATATACGGCACCAGCACATGCCCGAGCCCAG
644 GGCGATGCTC-GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
18382888 CATGTGCTACCGTAACCCTCAGTATGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
708 CATGTGCTACCGTAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
18382953 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTTGGCGCTCAGCCAACCA
773 CTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAACCAACCA
*** * ** *
18383018 GAGGGGCGGGATGTGTAAGTCGGGGATCGACTGGGT-CCCCTCTGCGTGCTGTCGATCC
838 GAGGGGCGGGATGCACAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGCCGATCC
** * * *
18383076 TGCTGCTGCAACCCTCGATTTGGTCTGATCTTAGATTAGGAATGAACTCCGTATCCCTAAGCCAA
1 TGCTGCTGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
18383141 CCGACGAAACTAGCGGGC--G-GGTGGGCACTATGCCGGCCAGAGAGACCGGATGCGCAAG-CGT
66 CCGACGAAACGAGCGGGCGGGCGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGT
* * *
18383202 GGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
131 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
*
18383267 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
196 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTT
* *
18383332 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTGA-TGTTCGGGATTTTTTAAAATTTTTTCGAA
261 GTTTTCTATTTTTCACGATTTTCGAAACTTTTT-ACAGTTCGGGATTTTTTAAAATTTTTTCGAA
* * *
18383396 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCATTGTATTTTTTTTGCCATGCACAAAAAAAA
325 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC--AAAAAA
*
18383461 ATCAGTTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGA
388 ATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
18383525 CACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
453 CACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGAGTTC
* * *
18383590 TCGAGGTTGGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCAT
518 TCGAGGTTTGATGAGGGATAGGAAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
18383655 GTGCGCACACCCCTCGGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
583 GTGCGCACACCCCCCTGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
* *
18383720 GATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
647 GATGCT-CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
18383785 GTGCTACCGTAACCCTCAGTCTAGTCTGATCCTAGACTGGGAATTAACTCCGT
711 GTGCTACCGTAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
18383838 TTGCCTAAGC
Statistics
Matches: 1497, Mismatches: 149, Indels: 41
0.89 0.09 0.02
Matches are distributed among these distances:
894 150 0.10
895 177 0.12
896 239 0.16
897 49 0.03
898 261 0.17
899 42 0.03
900 232 0.15
901 282 0.19
902 44 0.03
903 21 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
TGCTGCTGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTT
GTTTTCTATTTTTCACGATTTTCGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCGAAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGAAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCTGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
CTCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
ACCGTAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
GAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAACCAACCAGAGGGGCG
GGATGCACAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGCCGATCC
Found at i:18384548 original size:26 final size:26
Alignment explanation
Indices: 18384519--18384571 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18384509 CCGGTCCGAT
*
18384519 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18384545 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18384571 C
1 C
18384572 GTAAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18385458 original size:25 final size:26
Alignment explanation
Indices: 18385424--18385475 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
18385414 CCGATCTGAT
* *
18385424 CTTAGACTGGTAATGAAC-TCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
18385449 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
18385475 C
1 C
18385476 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:18385776 original size:879 final size:883
Alignment explanation
Indices: 18383786--18386327 Score: 3508
Period size: 879 Copynumber: 2.9 Consensus size: 883
18383776 GCCCAGCATG
* * * * * *
18383786 TGCTACCGTAACCCTCAGTCTAGTCTGATCCTAGACTGGGAATTAACTCCGTTTGCCTAAGCTAA
1 TGCTGCCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18383851 CCGACGAAATG-A---GCGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCACAA
66 CCGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* **
18383912 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGATA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCTAATG-CC
*
18383977 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * ** **
18384042 CGACTGGTTTTTTATTTTTCACGATTTTGGAAACTTTTTATGGTGT-GAGATTTTTTAAAATTTT
260 CGACTCGTTTTCTATTTGTCACGATTTTCAAAACTTTTTGCGGT-TCGAGATTTTTTAAAATTTT
* * * *
18384106 TTCGGAAGGAGTTTTGGCCCCATACTTGATAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAA
324 TTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
18384171 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
389 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18384236 TCAGACACTTTATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTG
454 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * * *
18384301 TGTTCTCGAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCAGCACAC
519 AGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
18384366 ATCATGTGCGCACACCCCCCGGCCGCCCCGATCATTGGAACCCCAATGCCGCCGGTCAGATTCT-
583 ATCATGTGCGCACACCCCCCGG-C-CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* *
18384430 -C--TG----G-CGATGGTGCCCCGGTGAAGAAAAAAATGGCTCCAGCACATGCCCGAGCCCAGC
646 GCGATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATATGGCTCCAGCACATGCCCGAGCCCAGC
*
18384487 ATGTGCTGCCGCAACCCTCA-GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
711 ATGTGCTGCCGCAACCCT-AGGTCCGGTCAGATCTTAGACT-GGAATGAACTCCGTATGCTTAGA
* * * * * * *
18384551 CTAGGAATGAACTTCGTATGCGTAAGTCCACCCATGAAACGAGCGTGCGGGGCGCTTAGTCGGCC
774 CTAGGAATAAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGGCGCTCAGCCGGCC
*
18384616 AGAGGGGCGGGATGGGCAAGCTGAGGATCGACCGGGTCCCCCTCTGCATGCTGCTGATCC
839 AGAGGGGCGGGAT-GGC-ACCT---G-TCGA-C-GG-------CTGCATGCTGCTGATCC
* * * *
18384676 TACTGCCGTAACCCTCAGTCCGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
18384741 CCGACGAAACGAGCGGGCGGACGAGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATACGCAA
66 CCGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
18384806 GCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGTCACATCTTCATATTTCTATGTGCTAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCTAATGCCA
*
18384871 TTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
18384936 GACTCATTTTCTATTTGTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
261 GACTCGTTTTCTATTTGTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
* *
18385001 CGGAAGGAATTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTAGCATGCACAAAA
326 CGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
18385066 AAATTCAGCTAAAAACTCGATGTGTACAAGATTTTG-GCCACCATTTGAAAAAAGTGTCCCTATT
391 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG--ACCATTTGAAAAAAGTGTCCCCATT
* * *
18385130 TCAAACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTG
454 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
18385195 AGTTCTCAAGGTTTGATGATGGATAGGGTGCTAATATAAGGGCCAATTACCAGCACCCATCGCAC
519 AGTTCTCGAGGTTTGATGAGGGATAGGG-GCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
18385260 ATCATGTGCGCACATGCCCCCCGGCCCCCTATCGCCGAAACCCCAATGTCGCCGGTCAGGTTCTA
583 ATCATGTGCGCACA--CCCCCCGGCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-
* *
18385325 CGGCGATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
645 C-GCGATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATATGGCTCCAGCACATGCCCGAGCCCA
* * * *
18385390 ACATGTGCTGTCGCAACCCTAGGTCCGATCTGATCTTAGACTGGTAATGAACT-CGTATGCTTAG
709 GCATGTGCTGCCGCAACCCTAGGTCCGGTCAGATCTTAGACTGG-AATGAACTCCGTATGCTTAG
*
18385454 ACTGGGAATAAACTTCGTATGCCTAAGTCAACCCCACGAAACGAGCATGC-GGGCGCTCAGCCGG
773 ACTAGGAATAAACTTCGTATGCCTAAGTCAA-CCCACGAAACGAGCATGCGGGGCGCTCAGCCGG
*
18385518 CCAGAGGGGCGGGAT-GC-CCT-TTG-C-G-TGC-TG-T-C-GATCC
837 CCAGAGGGGCGGGATGGCACCTGTCGACGGCTGCATGCTGCTGATCC
* *
18385555 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
18385620 TCGACGAAACGAACGGGAGGGCGGGCGGGCGGGCACTTCGTCGGCTAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
18385685 GCCATGGATCCATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCTAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCTAATGCCA
*
18385750 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
18385815 GACTCGTTTTCTATTTGTCACGATTTTCAAAACGTTTTGCGGTTC-AGGATTTTTTAAAATTTTT
261 GACTCGTTTTCTATTTGTCACGATTTTCAAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTT
* *
18385879 TAGGAAGG-ATTTTAGGCCCCAAACTTGGCAGACGTGATCCTTGTA-TTTTGTTGGCATGCACAA
325 TCGGAAGGAATTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
18385942 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
389 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
18386007 TCAGACACTTTAATGGCTACTGGGAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
454 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
18386072 AGTTCTTGAGGTTTGATGAGGGACAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCAC
519 AGTTCTCGAGGTTTGATGAGGGATAG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
18386137 ATCATGTGCGCACACCCCCTCGCCCCCCCGATCGTCGGAACCCAAATGCCACCGGGCAGGTTCTC
583 ATCATGTGCGCACACCCCC-CG-GCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-
* * * * *
18386202 CAGTGATGCTCCGACGATGGTGCCTGGGAGAAGAAAAATACGGCTCCAGCACATGCCCGAGCCTA
645 C-GCGATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATATGGCTCCAGCACATGCCCGAGCCCA
* * *
18386267 GCATGTGCTACCGCAACCCTCGGTCTGGTCAGATCTTAGACTAGGAATGAACTCCGTATGC
709 GCATGTGCTGCCGCAACCCTAGGTCCGGTCAGATCTTAGACT-GGAATGAACTCCGTATGC
18386328 CTAAGTCAAC
Statistics
Matches: 1471, Mismatches: 149, Indels: 76
0.87 0.09 0.04
Matches are distributed among these distances:
875 5 0.00
876 2 0.00
877 287 0.20
878 71 0.05
879 338 0.23
880 1 0.00
881 1 0.00
882 2 0.00
883 3 0.00
890 65 0.04
891 1 0.00
892 2 0.00
893 216 0.15
894 283 0.19
895 3 0.00
896 8 0.01
898 1 0.00
900 4 0.00
902 2 0.00
904 69 0.05
905 107 0.07
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (883 bp):
TGCTGCCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCTAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTGTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
CGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCGGCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGCGAT
GCTCCGACGATGGTGCCTCGGTGAAGAAAAATATGGCTCCAGCACATGCCCGAGCCCAGCATGTG
CTGCCGCAACCCTAGGTCCGGTCAGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTAGGAA
TAAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGGCGCTCAGCCGGCCAGAGGGG
CGGGATGGCACCTGTCGACGGCTGCATGCTGCTGATCC
Found at i:18386737 original size:26 final size:26
Alignment explanation
Indices: 18386701--18386753 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18386691 CCGGTCCGAT
*
18386701 CTTAGACTGGGATTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18386727 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18386753 C
1 C
18386754 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Done.