Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 105 of 117
Found at i:18388045 original size:26 final size:26
Alignment explanation
Indices: 18388016--18388068 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18388006 CCAATCCGAT
* *
18388016 CTTAGACTAGGAAAGAGCTCCGTATG
1 CTTAGACTAGGAAAGAACTCCATATG
* *
18388042 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAAAGAACTCCATATG
18388068 C
1 C
18388069 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCATATG
Found at i:18390817 original size:892 final size:894
Alignment explanation
Indices: 18388777--18390950 Score: 3130
Period size: 892 Copynumber: 2.4 Consensus size: 894
18388767 TCACCCCCCT
* * *
18388777 GGCGATGCTCCAACGATGGTGCCTCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAG
1 GGCGATGCTCCGATGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * * ** *
18388842 CTTGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCATATTTTTAGA
66 CATGTGCTGCCGTAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTACA
* * * *
18388907 CTGGTAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCGCTCAGCAGGCCA
131 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * *
18388972 GAGGGGTGGGATGCGCAAGTCGAGGATAGGCTC-GGTCCCCCTCTACGTGCTGTCGATCCTGCTA
196 GAGGGGTGGGATGCGTAAGTCGA-GAT-CGATCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTA
* * * *
18389036 CTGCAACCCTCACTCCGG-TCCAATCTTAGACTAGGAATAAACTCTGTATGCCTAAGCCAACTGA
259 CTGCAACCCTCAGTCTGGTTCC-ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGA
* * * *
18389100 TGAAACGAACGGGCGGGCGGGTGGGCGGGCACTATGCCTGCCAGAGAGACGGGATGCGCAAGCCG
323 CGAAACGAACGGGCGGGC--GT------GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
18389165 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCACTTT
380 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCACTTT
* *
18389230 TATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGATT
445 TATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAAGACT
* *
18389295 CGTTTTCTATTTTTTACGATTTTTGAAACCTTTTACGGTTTGGGAATTTTTAAAAATTTTTCGAA
510 CGTTTTCTATTTTTCACGATTTTTGAAACCTTTTACGGTTTCGGAATTTTTAAAAATTTTTCGAA
* * *
18389360 CGGAGTTTTGGTCCCAAACTTGGTAGATGTGATACTTGTATTTTTGTTGGCATGCACAAAACAAT
575 CGGAGTTTTGGCCCCAAACATGGTAGATGTGATACTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
18389425 TCACCGAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAGA
640 TCACCGAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAGA
*
18389490 CACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTC
705 CACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCACTTTAAGCGGGTGTGAGTTC
*
18389555 TCAAGGTCTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACTAGCACCCATCGCACATCAT
770 TCAAGGTCTGATGAGGGATAGGGAGCCAACATAAGGGCCAAGTACTAGCACCCATCGCACATCAT
* *
18389620 GTGTGCACACCTCCCGGCCCCTCCGATCGCCGGAACCTGAATGCCACCGATAAGGTTCTC
835 GTGCGCACACCTCCCGGCCCCTCCGATCGCCGGAACCTAAATGCCACCGATAAGGTTCTC
* * * * *
18389680 GACTATGCTCCGATGATGGTGCCTCAACGAAGAAAAATGCGGCACCAGCACATGCCCGAGACCAA
1 GGCGATGCTCCGATGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
18389745 CATGTGCTGCCGCAACCCTCAGTCCTGTCCGATTTTAGATTGGGAAGGAACTCCGTATGCTTACA
66 CATGTGCTGCCGTAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTACA
* * *
18389810 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCAGGAGCTCAGTCGGCCA
131 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCA
** ** *
18389875 GAGGGCCGGGGCGCGTAAGTCAGAGATC-ATCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTGC
196 GAGGGGTGGGATGCGTAAGTC-GAGATCGATCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTAC
* * *
18389939 CGCAACCCTTAGTCTGGTTCCATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACG
260 TGCAACCCTCAGTCTGGTTCCATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACG
* * * *
18390004 AAACGAACGAGCGGGCATGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATTGATA
325 AAACGAACGGGCGGGCGTGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
*
18390069 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGT
390 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCACTTTTATGGCTTGT
*
18390134 AAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAAGACTCGTTTTCTAT
455 AAATTCATAAAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAAGACTCGTTTTCTAT
* ** *
18390199 TTTTCACGATTTTTGAAACTTTTTGTGG-TTCGG-ATTGTTTAAAATTTTTTCGGAA-GGAGTTT
520 TTTTCACGATTTTTGAAACCTTTTACGGTTTCGGAATT-TTTAAAAATTTTTC-GAACGGAGTTT
18390261 TGGCCCCAAACATGGTAGATGTGATACTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCC-A
583 TGGCCCCAAACATGGTAGATGTGATACTTGTATTTTTGTTGGCATGCACAAAAAAATTCA-CCGA
18390325 AAAAATCAAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTA
647 AAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
18390389 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTCTCGAGGT
712 ATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCACTTTAAGCGGGTGTGAGTTCTCAAGGT
* * *
18390454 TTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACTAGCACCCATTGCACATCATGTGCGCA
777 CTGATGAGGGATAGGGAGCCAACATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCA
* ** * *
18390519 CACC-CCCGTCCCC-CCGATCGCCGGAAACC-AAATGCCGTCGGTCAGGTTCTCC
842 CACCTCCCGGCCCCTCCGATCGCCGG-AACCTAAATGCCACCGATAAGGTTCT-C
* * *
18390571 GGCGATGCTCCGATGATGGTGCCTCGATGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAG
1 GGCGATGCTCCGATGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
*
18390636 CATGTGCTGCCATAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTACA
66 CATGTGCTGCCGTAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTACA
* * * *
18390701 ATGGGAATGAACTCCGTATGCCTAAGTCAACCCACAGAACGAGCGTGTGGGCGCTCAGCCGGCCA
131 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * *
18390766 GAGGGGTAGGATACGTAAGCCGGAGATCGTTCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTAC
196 GAGGGGTGGGATGCGTAAGTC-GAGATCGATCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTAC
* * * * * *
18390831 TGCAACCCTCGGT-TCGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCTAATTGAC
260 TGCAACCCTCAGTCT-GGTTCCATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGAC
* * *
18390895 GAAACGAGCGGCGGGCGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAG
324 GAAACGA---ACGGGCGGGCGTGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
18390951 TNNNNNNNNN
Statistics
Matches: 1129, Mismatches: 129, Indels: 34
0.87 0.10 0.03
Matches are distributed among these distances:
890 27 0.02
891 208 0.18
892 250 0.22
893 116 0.10
894 197 0.17
895 40 0.04
900 1 0.00
901 2 0.00
902 97 0.09
903 189 0.17
904 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (894 bp):
GGCGATGCTCCGATGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
CATGTGCTGCCGTAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTACA
CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCA
GAGGGGTGGGATGCGTAAGTCGAGATCGATCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACT
GCAACCCTCAGTCTGGTTCCATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGA
AACGAACGGGCGGGCGTGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCACTTTTATGGCTTGTA
AATTCATAAAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAAGACTCGTTTTCTATT
TTTCACGATTTTTGAAACCTTTTACGGTTTCGGAATTTTTAAAAATTTTTCGAACGGAGTTTTGG
CCCCAAACATGGTAGATGTGATACTTGTATTTTTGTTGGCATGCACAAAAAAATTCACCGAAAAA
ATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGACAGCAAACCTGTAAAATCTCAAATGCACTTTAAGCGGGTGTGAGTTCTCAAGGTCTGA
TGAGGGATAGGGAGCCAACATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACC
TCCCGGCCCCTCCGATCGCCGGAACCTAAATGCCACCGATAAGGTTCTC
Found at i:18392661 original size:27 final size:27
Alignment explanation
Indices: 18392631--18392682 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
18392621 TCCGATCTTA
18392631 GACTGGGAATGAACTCCGTATGCCTTG
1 GACTGGGAATGAACTCCGTATGCCTTG
18392658 GACTGGGAATGAACTCCGTATGCCT
1 GACTGGGAATGAACTCCGTATGCCT
18392683 AAGTCAAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (27 bp):
GACTGGGAATGAACTCCGTATGCCTTG
Found at i:18393560 original size:26 final size:26
Alignment explanation
Indices: 18393524--18393576 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18393514 CCGGTTTGAT
*
18393524 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18393550 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18393576 C
1 C
18393577 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18395332 original size:26 final size:26
Alignment explanation
Indices: 18395296--18395348 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18395286 CTGGTCTGAT
18395296 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18395322 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18395348 C
1 C
18395349 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18396226 original size:26 final size:26
Alignment explanation
Indices: 18396190--18396242 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18396180 CTGGTCTGAT
*
18396190 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18396216 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18396242 C
1 C
18396243 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18396641 original size:902 final size:897
Alignment explanation
Indices: 18392016--18401656 Score: 13058
Period size: 903 Copynumber: 10.8 Consensus size: 897
18392006 TGGCATGCAT
* * * * *
18392016 AAGCTGTGGATCGATAGGGTGGCAGGTTGGTTTAGGCACATCTTCATATTTTTGCATTCCAATGC
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGC
* *
18392081 CATTTTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAC
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *** *
18392146 ACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTCAAGGTTCGAGATTTTTTAAAATTTT
131 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * *
18392211 TTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGGCGTGATTCTTGTATTTTTTTTGGCATGCACAA
196 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
* *
18392276 AAAAGTTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
261 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
18392341 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
326 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18392406 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATTGCAC
391 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
18392471 ATCATGTGCACACTCCCTCCCCCGGCCCCCTCTATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
456 ATCATGTGCGCA--CAC-CCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* *
18392536 CTCCGGCGA---T--GC-----TGCCTCG-CTGAAGAAAAATACGGCACCAGCACATGCCCGAGC
517 CTCCGGCGATGCTCCGCGATGGTGCCCCGAC-GAAGAAAAATGCGGCACCAGCACATGCCCGAGC
** * *
18392590 CCAGCATGTGCTGTTGCAACCCTCGGCCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCC
581 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG-C
* * * * *
18392655 TTGGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCAGGCACTCAACC
645 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * ** * *
18392720 GACCAGAGGGGCAGGATGCGCAAGCCGGGGATCAGTTGGGTCCCCATCTACGTGCTGCCGATCTT
710 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCT
* *** * * * *
18392785 GCTGCTAAAACCCTCAGTCCGGTCTTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAAC
775 GCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * *
18392850 CGATGAAACGAGCGGGCGGGCAGGCGGGCACTATGCCGACTAGAGAGACGGGATGCAC
840 CGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGC
* *
18392908 AAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGC
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGC
* *
18392973 CATTTTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
18393038 GCGACTCGTTTTCTA-TTTTCATGATTTTCCAATCGTTTTTGCGGTTCGGGACTTTTTAAAATTT
131 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAAC-TTTTTGCGGTTCGGGATTTTTTAAAATTT
* * *
18393102 TTTCGGAAGGAGTTTTGGCCCCAAACGTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCGCA
195 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
* *
18393167 AAAAAATTCAGCTAAGAACTCGAAGTGTACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
260 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
18393232 TTCAGACACTTTAATTGCTACTGGCTA-CAAACCTGTAACATCTCAAATGCTCTTTAA-GGGGTG
325 TTCAGACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
18393295 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCAAT-G
389 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC-ATCG
* * * *
18393359 CACATCATGTGCACACACCCCCCCGGACCCCCGATCGTCGGAACCCCAATGCCGCTGCTCAGGTT
453 CACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * * *
18393424 CT-CGGCGATGCTCCGGCGATGGTG-CCCAATGAAGAAAAATGTGGCACCGGCACATGCCTGAGC
517 CTCCGGCGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * ** *
18393487 CTAGCATGTGCTGCCGTAACCCTCGATCCGGTTTGATCTTAGACTGGGAATGAACTCTGTATGCT
581 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *** *
18393552 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAGGAGCGTATAGGTGCTCAGCCG
646 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * *
18393617 GCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGACCAGGTCCTCCTTTACGTGCTGTCGATCCTC
711 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTG
* * ** * *
18393682 CTACCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTGAGCCAACC
776 CTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * **
18393747 GATGAAACGAGCGGGCGGGCAGACGGGCGGGTACTACGCCAGCCAGAGAGACGGGATGCGC
841 GACGAAACGAGCGGGC-GG--G-CGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGC
* * * * *
18393808 AAGCCTTGGATCGATAGGGAGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGC
* *
18393873 CATTTTTATGGCTTGTAAATTCATAAAATGGTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAG
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * * *
18393938 ACGACTCGTTTTCTATTTTCCTTGATTTTTGAAACTTTTTGCTGTTCGAGATTTTTTGAAATTTT
131 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * * *
18394003 TTCGAAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATTTTTTTTGTTGG-ATGCATA
196 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT-TTGGCATGCACA
*
18394067 AAAAAATTCAGCTGAAAACTC-ACAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
260 AAAAAATTCAGCTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
** * *
18394131 TTTCAGACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGAGGGTG
324 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
18394196 TGAGTTCTAGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTGCCAGAACCCATCGC
389 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
*
18394261 ACATCATGTGCGCACACCCCCCTCGGCCCCCCGATAGTCGGAACCCCAATGCCGCCGGTCAGGTT
454 ACATCATGTGCGCACA-CCCCC-CGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * *
18394326 CT----C--TG----GCGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAACC
517 CTCCGGCGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
** * * *
18394381 CAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGATTGGGAATGAACTTCATATGCTT
582 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
18394446 AGACTGGAAATGAGCTCCGTATGCCTAAGTCATCCCATGAAACGAGCGT----GCG---A----G
647 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * *
18394500 -C--A----C---AT-----AGCCGAGGATCGGTCGGCTCGCCCTCTACGTGCTACCGATCTTGC
712 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * * * * *
18394550 TACCGTAACCCTTGGTCTAGTCTGATCTTAGACAGGGAATGAACTTCGTATTCCTAAGCCAACCA
777 TACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * *
18394615 ACGAAATGAGCGGACGGGCGAGCGGACGGGCACTACG-TCGGCCAGAAAAATGGGATGCGC
842 ACGAAACGAGCGGGCGGGC--G-GG-CGGGCACTACGCT-GGCCAGAGAGACGGGATGCGC
* * * * * *
18394675 AAGCCGTAGATCTATAGGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTTTGCATGCAAATAC
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGC
** *
18394740 CATTTTTATGATTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAG
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * * * *
18394805 ACGACTCATTTTTTATTTTTCACGATCTTCAAAACTTTTTACGATTCGGGATTTTTTAAAATTTT
131 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * * *
18394870 TTCGAAAAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCATGTATTTTTTTCGGCATGCACAA
196 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
18394935 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGTGACCATTTGAAAAAAGTGTCCCCGT
261 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT-GTGACCATTTGAAAAAAGTGTCCCCAT
18395000 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
325 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
18395065 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCG
390 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
18395130 CATCATGTGCGCACACCTCCCCCGGCGCCCCGATCGTCGGAACCCCAATGCCGTCGATAAGGTTC
455 CATCATGTGCGCACA-C-CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * * * *
18395195 TCCGACGATGCTCGGACGATGGTACCCTGGCAAAGAAAAATGCGGCACTAGCACTTGCCCGAGCC
518 TCCGGCGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * *
18395260 CAGCATGTGCTCCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTT
582 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
18395325 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCATGCGGGCGCTCAGCCAG
647 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * *
18395390 CCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGTTGCCGATCCTTC
712 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * ** * *
18395455 TGCCACAACCCTCCGTCTGGTCCAATCTTAGACTGCGAAAGAACTCCGTATGCCTAAGCCAACCG
777 TACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
18395520 ACGAAACGA----GCGGGCGGGCGGGCACTACG-TCGGCCAGAGAGACGGGATGCGC
842 ACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGC
** * * *
18395572 AAGCTATAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTTTGTGTGCCAATGC
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGC
*
18395637 CATTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
18395702 ACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCCGTTCGGGATTTTTTAAAATTTT
131 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * *
18395767 TTTGGTAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
196 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
18395832 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
261 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
18395897 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
326 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18395962 AGTTCTTGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
391 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
18396027 ATCATGTGTGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGATCAGGTTCTC
456 ATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * *
18396092 CGGCGATGCTCCGCGATGGTGCCCCGACAAAGAAAAATGCAGCACCATCACATGCCCGAGCCCAG
520 CGGCGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * *
18396157 CATGTGCTGTCACAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGA
585 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
18396222 CTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCTA
650 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * *
18396287 GAGGGGCGGGATGCTGCAAGTCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTCGATCCTGCTG
715 GAGGGGCGGGATGC-GCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTA
*
18396352 CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGAC
779 CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * *
18396417 GAAGCAACCGGGCGGGCTGCGGGCGGGCACTACGCTGGCCAGAGAGATGGGATGCGC
844 GAAACGAGCGGGC-GG--GCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGC
* *
18396474 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTTTGCGTGCCAATGC
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGC
* * *
18396539 CATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACATGAAGTTTCATGCCAAG
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
18396604 ACTACTTGTTTTGTATTTTTCATGATTTTGGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
131 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * * * *
18396669 TTCGAAAGGAGTTTTGGCCCAAAACTTGGAAGACATGATCCTTGTATTTTTGTTGGCATGCAAAA
196 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
18396734 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
261 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
18396799 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
326 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18396864 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCACGTACCAGCACCCACCGCAC
391 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
18396929 ATTATGTGCGCACACCCCCTGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTTAGGTTCTCC
456 ATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * *
18396994 GACGATGCTCCGGCGATGGTGCCTCGACAAAGAAAAATGCAGCACCAGCATATGCCCGAGCCCAA
521 GGCGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
18397059 CATGTGCTGTCGCATCCCTTGGTCTGGCCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGA
585 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
18397124 CTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCTTACGGGCGCTCAGCCGGCCA
650 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* ** * * *
18397189 GAGGGGCGGGATGCGCAAGCCGGGGATCGGTCAAGTCCCCCTTTACGTGCTGCTGATCATGCTAC
715 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTAC
* * *
18397254 CGCAACCCTCGGTCCGGTC-CATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGAC
780 CGCAACCCTCGGTCTGGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * *
18397318 GAAACGAACGGACCGGCTGGCGGGCGAGGCAGTACGCCGGCCAAAGAGACGGGATGCGC
844 GAAACG-A--G-CGGGCGGGCGGGCG-GGCACTACGCTGGCCAGAGAGACGGGATGCGC
* *
18397377 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGC
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGC
18397442 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
18397507 ATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGAATTTTTAAACTTTT
131 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
** * * * * *
18397572 TTCGGAAGGAGTTCCGGCCCCAAACTTGGTAGACATGATCATTGTGTTTTTGTTGGTATGCACAA
196 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
18397637 AAAAATTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
261 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18397702 TCAAACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
326 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
18397767 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
391 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** *
18397832 ATCATGTGCGCACACCCCCCCGACCCCCCGATCACCGGAACCCCAATGCCGCCGGTAAGGTTCTC
456 ATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * *
18397897 CGACGATGCTCCGGCGATGGTGCCCTGGCGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCA
520 CGGCGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * ** ** *
18397962 GCATGTGCTGCCACAACCCTCAGTCCAGTCCGATCTTA-ACTGGGAACAAACTCCATATGCTTAG
584 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* *
18398026 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGGCC
649 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * ** * * *
18398091 AGAGGGGTGGGATGCACAAGCTGGGGATTGGCCGGGTCCCCCTCTGTGTGCTACTGATCCTGCTG
714 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTA
** * * *
18398156 TTGCAACCCTCGGTCTGGTCCGATCTTAGACTGTGAGTGAACTCCGTATGCCTAAGCCAACCGAC
779 CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * *
18398221 GAAATGA----GCGGGCGGGCGGGCACTACACTGACCAGAGAGACGAGATGCGC
844 GAAACGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGC
* * *
18398271 AAGCCGTGGATCGATAGGATGGTAGGTGGGTTTA-GCACATCTTCATTTTTTTGTGTGCCAATGC
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGC
18398335 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
18398400 ACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTATAATTTT
131 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
** * *
18398465 TTCAAAAGGAGTTTTGGCCCAAAACTTGGTAGATGTGATCCTTGT-TTTTTTGTTGGCATGCACA
196 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT-TTGGCATGCACA
*
18398529 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCAT
260 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
18398594 TTCAGACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
325 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
18398659 GAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAACATAAGGGCCAAGTACCAGC-CTCCATCAC
390 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC-CCATCGC
** *
18398723 ACATCATGTGCGCACACCCCCCCCGGCCCCTCCGATCGTCGGAACCCCAATGCCATCGGCCAGGT
454 ACATCATGTGCGCACA--CCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * * *
18398788 TCTCCGGTGATGCTCTGGTGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAG
516 TCTCCGGCGATGCTC-CGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * *
18398853 CCCAGCATGTGCTACCGCAACCCTCGATCTGGTCCGATCTTAGA-TCGGGAAAGAACTCCGTCTG
580 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACT-GGGAATGAACTCCGTATG
* * * * *
18398917 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAAAGAGCTTACGGGCGCTCAGT
644 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** *
18398982 CGGCCAGAGGGGCGGGATGCGCAAGCCGGCGATTGATCGGGTCCCCCTCTACGTGCTGTCGATCC
709 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCC
* * *
18399047 TGCTATCGCAACCCTCGGTCTGGTC-GAAACTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
774 TGCTACCGCAACCCTCGGTCTGGTCTG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
18399111 ATCGATGAAACGAGCAGGCGGGCGGGCGGGTGGGCACTACG-TCGGCCAGAGACACGAGTTGCGC
838 ACCGACGAAAC--G-A-GCGGGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGC
* * *
18399175 AAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGC
*
18399240 CATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
18399305 ACGACTCGTTTTCTATTTTTC-TCGATTTTTGAAACTTTTTGGGGTTCGGGATTTTTTAAAATTT
131 ACGACTCGTTTTCTATTTTTCAT-GATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
* *
18399369 TTTCGGAAGGAGTTTTGGCCCCAAGCTTGATAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-
195 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
* *
18399433 AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTAT
260 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
18399498 TTCAGACACTTTAATGGCTACTTGCAGCAAGCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
325 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
18399563 GAGTTCTCGAGGTTTGATCAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
390 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * **
18399628 CATCATGTGCGCACACCCCCCAGCCCCTCCCATCGTTGGAACCCCAATGCCGCCAAAT-AGGTTC
455 CATCATGTGCGCACACCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGCC-GGTCAGGTTC
* * * **** * *
18399692 TCCGACGATGCTACGACGATGGTGCCCCGGCGAAGAAAAATTTTACACTAGCACATGCCC-AACC
518 TCCGGCGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
*
18399756 CAGCATGTGCTGCCAGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
582 CAGCATGTGCTGCC-GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* *
18399821 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTG
646 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * * *
18399886 GCTAGAGGGGCGGGATGAGCAAGCCGGGGATTGGTCGGGTCCCCCTCTATGTGCTACCAATCCTA
711 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTG
* * *
18399951 CTAACACAACCCTCGGT-TCGGTCTGATCTTAGACTGGTAATGAACTCCGTATGCCTAAGCCAAC
776 CTACCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
18400015 CGACGAAATGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGTTGCGC
840 CGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGC
* * * *
18400073 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTATGTACATCTTCATATTTCTACGTGCCAATGC
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGC
*
18400138 CATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
** * * *
18400203 ATTACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCAGAAATTTTTAAAATTTT
131 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * *
18400268 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTGTTTTTTTGTTGGCTTGCAA
196 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTT-TTGGCATGCAC
*
18400333 AAAAAAATTCAGCTAAAAACTCGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
259 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
18400398 TTTCAGATACTTTAATGGCTACTGGCAGAAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTG
324 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
18400463 TGAGTTCTCTAGGTTTGATGAGGGATAGGCGGCCAATATAAGGGCCAAGTACCAGCACCCATTGC
389 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * **
18400528 ACATCGTGTGCGTACACCCCCCCTCGGCCCCCCGATCGTTGGAACCTCAATGCCATCGGTCAGGT
454 ACATCATGTGCG--CACACCCCC-CGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * * *
18400593 TCTCCGGTGATGCTCTGGTGATGGTGCCCCGATGAAGAAATATGCGGCACCAGCACATGCCCGAG
516 TCTCCGGCGATGCTC-CGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
** * * * * * *
18400658 CCCAGCATGTGCTATCGTAACCCTCGATCTGGTCCGATCTTACACTGGTAAAGAACTCTGTATGC
580 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
18400723 TTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCT
645 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
** ** * * * *
18400788 GGCCAGAGGGGCGAAATGCGCAAATCGGGGTTCGACCGGATCCCCCTCTACGTGCTGTCGATCCT
710 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCT
* * * * * * *
18400853 GCTACTGTAACCTTTGGTCCGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAAC
775 GCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
18400918 CGACGAAACGAGCAGGCGGGCGAGCGGGCACTACG-TCGGCCAGAGAGACGAGTTGCGC
840 CGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGC
* * * * * * *
18400976 AAGCTGTTGATCGATAGGGTGGTAGCTAGGTTTAGGCACATCTTCTTATTTCTACGTGCCAATGC
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGC
*
18401041 CATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* **
18401106 ACGACTCCTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTT
131 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * *
18401171 TTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACG-AAGTCCTTTTATTTTTGTTGGCATGCACA
196 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA-TCCTTGTATTTTTTTTGGCATGCACA
18401235 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG-CCCGCA
260 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC-CA
** *
18401299 TTTCAGATTCTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATG-TCTTTAAGGGGGTG
324 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
18401363 TGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGC
389 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
18401428 ACATCGTGTGCGCACA-CCCCCTGCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTTAGGTTCT
454 ACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * *
18401492 CTGGCGATGCTCCGGTGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
519 CCGGCGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
** ** * * *
18401557 AGCATGTGCTGCCGCAACCCTCAATCCAGTCTGATCTTAGACTAGGAATGAACTCCTTATGCTTA
583 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
18401622 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
648 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
18401657 CCGGCCCACC
Statistics
Matches: 7772, Mismatches: 841, Indels: 268
0.88 0.09 0.03
Matches are distributed among these distances:
863 1 0.00
864 1 0.00
865 1 0.00
866 7 0.00
867 379 0.05
868 204 0.03
869 4 0.00
872 3 0.00
874 2 0.00
875 1 0.00
878 1 0.00
879 142 0.02
881 1 0.00
882 1 0.00
883 3 0.00
886 2 0.00
887 6 0.00
888 33 0.00
889 14 0.00
890 3 0.00
891 97 0.01
892 351 0.05
893 533 0.07
894 256 0.03
895 289 0.04
896 721 0.09
897 393 0.05
898 275 0.04
899 16 0.00
900 462 0.06
901 587 0.08
902 1027 0.13
903 1229 0.16
904 423 0.05
905 298 0.04
906 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGC
CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
GGCGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
ATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
AGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACC
GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
AACGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGC
Found at i:18397130 original size:26 final size:26
Alignment explanation
Indices: 18397092--18397144 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18397082 CTGGCCCGAT
* *
18397092 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18397118 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18397144 C
1 C
18397145 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18398024 original size:25 final size:26
Alignment explanation
Indices: 18397996--18398047 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18397986 CCAGTCCGAT
18397996 CTTA-ACTGGGAACAAACTCCATATG
1 CTTAGACTGGGAACAAACTCCATATG
** *
18398021 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACAAACTCCATATG
18398047 C
1 C
18398048 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACAAACTCCATATG
Found at i:18399829 original size:26 final size:26
Alignment explanation
Indices: 18399793--18399845 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18399783 CTGGTCTGAT
18399793 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18399819 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18399845 C
1 C
18399846 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18400725 original size:26 final size:26
Alignment explanation
Indices: 18400696--18400748 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
18400686 CTGGTCCGAT
*
18400696 CTTACACTGGTAAAGAACT-CTGTATG
1 CTTACACTGGGAAAGAACTAC-GTATG
* *
18400722 CTTAGACTGGGAATGAACTACGTATG
1 CTTACACTGGGAAAGAACTACGTATG
18400748 C
1 C
18400749 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAAAGAACTACGTATG
Found at i:18401630 original size:26 final size:26
Alignment explanation
Indices: 18401592--18401644 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18401582 CCAGTCTGAT
*
18401592 CTTAGACTAGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18401618 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18401644 C
1 C
18401645 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18402223 original size:25 final size:27
Alignment explanation
Indices: 18402195--18402250 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
18402185 TCACGTGAAG
18402195 TTTTACGG-T-AAGACTTTTTAAAATT
1 TTTTACGGTTCAAGACTTTTTAAAATT
*
18402220 TTTTACGGTTCAAGATTTTTTAAAATT
1 TTTTACGGTTCAAGACTTTTTAAAATT
18402247 TTTT
1 TTTT
18402251 GGAAGGAGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 8 0.29
26 1 0.04
27 19 0.68
ACGTcount: A:0.29, C:0.07, G:0.11, T:0.54
Consensus pattern (27 bp):
TTTTACGGTTCAAGACTTTTTAAAATT
Found at i:18402713 original size:26 final size:26
Alignment explanation
Indices: 18402670--18402722 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18402660 CTGGTTCGAT
* *
18402670 CTTAGACTAGGAATGAACTCCTTATG
1 CTTAGACTAGGAACGAACTCCGTATG
18402696 CTTAGACT-GGAAACGAACTCCGTATG
1 CTTAGACTAGG-AACGAACTCCGTATG
18402722 C
1 C
18402723 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCGTATG
Found at i:18404170 original size:893 final size:888
Alignment explanation
Indices: 18402233--18404965 Score: 3646
Period size: 893 Copynumber: 3.0 Consensus size: 888
18402223 TACGGTTCAA
** * *
18402233 GATTTTTTAAAATTTTTT-GGAAGGAGTTTTGATCCCAAAGTTGGTAAACGTGATCCTTGTATTT
1 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
*
18402297 TTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
66 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-
** *
18402362 AAAAAAG-GTTTCCATTT-AGACACTTTAATGGCAACTGGCAGCAAACCTGTAAAATCTCAAATG
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
18402425 CTCTCTAAGGGGGTGTGAGTTCTT-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
195 CTCT-TAAGGGGGTGTGAGTT-TTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * *
18402489 TACCAGCACCCATTGCACATCGTGTGCGCACACCCCCCGCCCCTCCGATCG-CTGGAACGCCAAT
258 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGCCCC-CCGATCGTC-GGAACCCCAAT
* * *
18402553 GCCGCCGATCAGGTTCTCCGGTGATGCTCCAGTGATGGTGCCCCGATGAAGAAAAATACGGCACC
321 GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATACGGCACC
* * * * *
18402618 AGCACATGCCCGAGCCCAGCATGTGCTGCGGCAACCCTTGATCTGGTTCGATCTTAGACTAGGAA
386 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAA
* * * *
18402683 TGAAC-TCCTTATGCTTAGACTGGAAACGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
451 TGAACTTCC-AATGCTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCG
* * * *
18402747 TGCGGGCACTTAGCTGGCTAGAGAGGCGGGATGCGCAAGCTGGGGATTGGTCGGGTCCCCCTCTG
515 TGTGGGCACTCAGCCGGCTAGAGAGGCGGGATGCGCAAGC-GGGGATCGGTCGGGTCCCCCTCTG
* * * * * * * * *
18402812 GGTGCTACCGATCCTGTTGTTGCAACCCTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCTG
579 CGTGCTGCAGATCCTGCTATCGCAACCCTCGGTCT-ATCCGATCTTAGACTAGGAATGAACTCCG
* *
18402877 TATGCCTAAGCCAAACCGACGAAAAGAGCGGGCGAGCGGGCGGGCGGGC-ACTGCATCGGCCAGA
643 TATGCCTAAGCC-AACCGACGAAACGAGC--G-GA-CGGGCGGGC--ACTAC-GC--CGG-CAGA
18402941 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
697 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* ** **
18403006 CTATGTGCCAATGCCATTTTTATTTCTCCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
762 CTGTGTGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * *
18403071 AGTTTCATGGCAAGACGA-CTCATTTTCTATTTTTCACA-ATTTTTGAAACTTTTTGTGGTTTGG
827 AGTTTCATGGCAAGACGATC-CGTTTTTTATTTTTCA-AGATTTTT-AACCTTTTTGTGGTTTAG
*
18403134 GATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
1 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* *
18403199 TTTTTGGCATGCCCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
66 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
18403264 AAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
131 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
** * * *
18403329 TCTTAAAGGGGGCATGAGTTTTCGAGGTTTGGTAAAGGATAGGGGGCCAATATAAGGGCCAAGTC
196 TCTT-AAGGGGGTGTGAGTTTTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTA
18403394 CCAGCACCCATCGCACATCATGTGCG-ACACCCCCTGGCCCCCCGATCGTCGGAACCCCAATGCC
260 CCAGCACCCATCGCACATCATGTGCGCACACCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCC
* *
18403458 GCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAGC
324 GCCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATACGGCACCAGC
* * * *
18403523 ACATGCCCGATCCCAGCATGTGCTACCGCAACCCTAGGCCCGGTCCGATCTTAGACTGGGAATGA
389 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGA
* * * *
18403588 ACTTCGAATGCTTAGACTGGGAATGAACTCTGTATGCGTAAATCAACCCACGAAATGAGCGTGTG
454 ACTTCCAATGCTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTGTG
* * * *
18403653 GGCACTCAGCCAGCAAGATAGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCTCC-GTGCGT
519 GGCACTCAGCCGGCTAGAGAGGCGGGATGCGCAAG-CGGGGATCGGTCGGGTCCC-CCTCTGCGT
* * * *
18403717 GCTGCTGATCCTGCTATCACAACCCTCGGTCCTATCTGATCTTAGACTGGGAATGAACTCCGTAT
582 GCTGCAGATCCTGCTATCGCAACCCTCGGT-CTATCCGATCTTAGACTAGGAATGAACTCCGTAT
*
18403782 GCCTAAGCCAACCGACGAAACGAGTGGACGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCG
646 GCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTACGCCGGC-AGAGAGACGGGATGCG
* * * *
18403847 CAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTCA-GCACATCTTTATATTTTTGCGTGCCAAT
710 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT-AGGCACATCTTCATATTTCTGTGTGCCAAT
* *
18403911 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTGCACGTGAAGTTTCATGGCA
774 GCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
18403976 AGATGATCCGTTTTTTATTTTTCAAGATATTTTATCCTTTTTGTGGTTTAG
839 AGACGATCCGTTTTTTATTTTTCAAGAT-TTTTAACCTTTTTGTGGTTTAG
*
18404027 GATTTTTTAAAATCCTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
1 GATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * * *
18404091 TTTGTTGGCATGCACAAAAAAAATCAGCTAAAAAATTGAAGTGTAGAAGATTTTGTGACCATTTG
65 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
18404156 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATG
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * *
18404221 CTCTTTAAGGGGGTGCGAGTTATCGAGGATTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGT
195 CTC-TTAAGGGGGTGTGAGTTTTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGT
*
18404286 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGA
259 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCGG-CCCCCCGATCGTCGGAACCCCAATGC
* *
18404351 CGCCGGTCAGGTTCTTCGTCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAAT--GTGCACCA
323 CGCCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATACG-GCACCA
* * * * *
18404414 GCACATGCTCGAGCCCAGCATGTGCTGTCGTAACCCTTGGTCCAGTCCGATCTTAGATTGGGAAT
387 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAAT
*
18404479 GAAC-TCCATATGCTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCCT
452 GAACTTCCA-ATGCTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGT
* * * * * ** *
18404543 GTGGGCGCTCAGCCGGCTAGAGGGGCGGGATGTGTAAGCCGGGGATCGATCATGTCCCCCTCTAC
516 GTGGGCACTCAGCCGGCTAGAGAGGCGGGATGCGCAAG-CGGGGATCGGTCGGGTCCCCCTCTGC
* * * * * * **
18404608 GTGCTGCAGATCTTACTATCGCAACCCTTAGTTCGATCCGATCTTAGACCAAAAATGAACTCCGT
580 GTGCTGCAGATCCTGCTATCGCAACCC-TCGGTCTATCCGATCTTAGACTAGGAATGAACTCCGT
*** * *
18404673 ATGCCTAATAAAATCGACGAAATGAGCGGGCGAGCGGGCGGGCGGATGGGTGGGCACTACGCCGG
644 ATGCCTAAGCCAACCGACG-AA--A-----CGAGCGGACGGGC--------GGGCACTACGCCGG
* * *
18404738 CCGAGAGACAGGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
693 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*
18404803 ATTTCTGTGTGGCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCAC
758 ATTTCTGTGTGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * *
18404868 GTGAAGTTTCATGGCAAGACGATTCGTTTTTTATTTTTCACGATTTTGGAACCTTTTTGCGG-TT
823 GTGAAGTTTCATGGCAAGACGATCCGTTTTTTATTTTTCAAGATTTT-TAACCTTTTTGTGGTTT
*
18404932 CG
887 AG
*
18404934 AGATTTTTTAAAATTTTTTCGAAAGGAGTTTT
1 -GATTTTTTAAAATTTTTTCGGAAGGAGTTTT
18404966 TAAAACCTGT
Statistics
Matches: 1617, Mismatches: 170, Indels: 83
0.86 0.09 0.04
Matches are distributed among these distances:
892 8 0.00
893 664 0.41
894 101 0.06
895 3 0.00
896 3 0.00
897 9 0.01
898 2 0.00
899 1 0.00
901 50 0.03
902 421 0.26
903 136 0.08
907 11 0.01
908 193 0.12
909 15 0.01
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (888 bp):
GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTAAGGGGGTGTGAGTTTTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
CAGCACCCATCGCACATCATGTGCGCACACCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGC
CGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCAC
ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAAC
TTCCAATGCTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTGTGGG
CACTCAGCCGGCTAGAGAGGCGGGATGCGCAAGCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
CAGATCCTGCTATCGCAACCCTCGGTCTATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTA
AGCCAACCGACGAAACGAGCGGACGGGCGGGCACTACGCCGGCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTT
TTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAT
CCGTTTTTTATTTTTCAAGATTTTTAACCTTTTTGTGGTTTAG
Found at i:18404494 original size:26 final size:26
Alignment explanation
Indices: 18404465--18404517 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18404455 CCAGTCCGAT
*
18404465 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18404491 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18404517 C
1 C
18404518 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18405608 original size:759 final size:760
Alignment explanation
Indices: 18404199--18405711 Score: 2056
Period size: 759 Copynumber: 2.0 Consensus size: 760
18404189 CTACTGGCAG
*
18404199 AAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTATCGAGGATTGATAAGGGATAG
1 AAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTATCAAGGATTGATAAGGGATAG
* * *
18404264 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGCCCCC
66 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGACCCC
* **
18404329 CCGATCGTCGGAACCCCAATGACGCCGGTCAGGTTCTTCGTCGATGCTCCGGTGATGGTGCCCCG
131 CCGATCGTCGGAACCCCAATGACGCCGGTCAGGTTCTCCGTCGATGCTCCGACGATGGTGCCCCG
** * * * * *
18404394 ATGAAGAAAAATGTGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGTAACCCTTGGTCCAG
196 ACAAAGAAAAATGGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG
* * * * * *
18404459 TCCGATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCGTAAGT
261 TCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACCGAGAATAAACTCCGTATGCCTAAGT
* * * * *
18404524 CAACCCACGAAACGAGCCTGTGGGCGCTCAGCCGGCTAGAGGGGCGGGATGTGTAAGCCGGGGAT
326 CAACCCACGAAACGAGCCTGCGAGCGCTCAACCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGAT
* * * * *
18404589 CGATCATGTCCCCCTCTACGTGCTGCAGATCTTACTATCGCAACCCTTAGTTCGATCCGATCTTA
391 CGATCAGGTCCCCCTCTACGTGCTGCAGATCCTACTACCGCAACCCTGAGTCCGATCCGATCTTA
* * * *
18404654 GACCAAAAATGAACTCCGTATGCCTAATAAAATCGACGAAATGAGCGGGCGAGCGGGCGGGCGGA
456 GACCAAAAATGAACTCCATATGCCTAACAAAATCGACGAAA-GA----GCGAACAGGCGGGC-G-
* * * * *
18404719 TGGGTGGGCACTACGCCGGCCGAGAGACAGGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTG
514 -GGGCGGGCACCAAGCCGACCGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
18404784 GGTTTAGGCACATCTTCATATTTCTGTGTGGCAATGCCATTTTTATGGCTTATAAATTCATACAA
578 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTATAAATTCATACAA
* ** * * *
18404849 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGATTCGTTTTTTATTTTTCACGATTT
643 TGGTCCCTTAAGCCTCCACGTGAAGTTTCACAGAAAGACGACTCGTTTTCTATTTTTCACGATTT
* * *
18404914 TGGAACCTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTT
708 TGGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTT
* * * * *
18404967 AAAACCTGTAAATTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
1 AAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTATCAAGGATTGATAAGGGATAG
*
18405032 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACATATCATGTGCGCACACCCCCCCGACCC
66 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCGACCC
* *
18405097 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAG-CGATGCTTCGACGATGGTGCCC
130 CCCGATCGTCGGAACCCCAATGACGCCGGTCAGGTTCTCC-GTCGATGCTCCGACGATGGTGCCC
* *
18405161 TGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-
194 CGACAAAGAAAAATG-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* *
18405225 CTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACCGAGAATTAAACTCCGTATGCC
258 CAG-TCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACCGAGAA-TAAACTCCGTATGCC
* * * *
18405290 TAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAACCGGCCAGAGGGGTGGGATGCGTAAGTCG
321 TAAGTCAACCCACGAAACGAGCCTGCGAGCGCTCAACCGGCCAGAGGGGCGGGATGCGTAAGCCG
* * * * *
18405355 GGGATCGGTCGGGTCCCCCTCTACGTGCTGTC-GATCCTACTGCCGCAACCCTCGA-TCCGGTCT
386 GGGATCGATCAGGTCCCCCTCTACGTGCTG-CAGATCCTACTACCGCAACCCT-GAGTCCGATCC
**** * * *
18405418 GATCTTAGACTGGGAATTAACTCCATATG-CTAAGCCAACT-GACG-AA-A-CGAACAGGCGGGC
449 GATCTTAGACCAAAAATGAACTCCATATGCCTAA-CAAAATCGACGAAAGAGCGAACAGGCGGGC
* *
18405478 -GGGCGGGCACCAAGCCGACCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGT
513 GGGGCGGGCACCAAGCCGACC-GAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
18405542 GGGTTTAGGCATATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
577 GGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTATAAATTCATACA
*
18405607 ATGGTCCCTTAAGCCTCCACGTGAAGTTTCACAGAAAGACGACTCGTTTTCTATTTTTCATGATT
642 ATGGTCCCTTAAGCCTCCACGTGAAGTTTCACAGAAAGACGACTCGTTTTCTATTTTTCACGATT
*
18405672 TTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTT
707 TTGGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTT
18405712 TGGAAGGTGT
Statistics
Matches: 653, Mismatches: 83, Indels: 27
0.86 0.11 0.04
Matches are distributed among these distances:
758 16 0.02
759 196 0.30
762 11 0.02
767 1 0.00
768 110 0.17
769 81 0.12
770 92 0.14
771 144 0.22
772 2 0.00
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (760 bp):
AAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTATCAAGGATTGATAAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGACCCC
CCGATCGTCGGAACCCCAATGACGCCGGTCAGGTTCTCCGTCGATGCTCCGACGATGGTGCCCCG
ACAAAGAAAAATGGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG
TCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACCGAGAATAAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGCCTGCGAGCGCTCAACCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGAT
CGATCAGGTCCCCCTCTACGTGCTGCAGATCCTACTACCGCAACCCTGAGTCCGATCCGATCTTA
GACCAAAAATGAACTCCATATGCCTAACAAAATCGACGAAAGAGCGAACAGGCGGGCGGGGCGGG
CACCAAGCCGACCGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCT
TAAGCCTCCACGTGAAGTTTCACAGAAAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAACT
TTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTT
Found at i:18406333 original size:26 final size:26
Alignment explanation
Indices: 18406304--18406354 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18406294 GGTCCGATCA
*
18406304 TAGACTAGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCATATGCT
*
18406330 TAGACTGGGAATGAACTCCATATGC
1 TAGACTAGGAATGAACTCCATATGC
18406355 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCT
Found at i:18407240 original size:26 final size:26
Alignment explanation
Indices: 18407204--18407256 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18407194 CCAATCCAAT
*
18407204 CTTAGAATGGGATTGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
18407230 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
18407256 C
1 C
18407257 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:18408129 original size:26 final size:26
Alignment explanation
Indices: 18408100--18408149 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18408090 CCGGTCAGAT
*
18408100 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
18408126 CTTAGACTGGAAATGAACTCCGTA
1 CTTAGACTGGAAATGAACTCCGTA
18408150 GACCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:18409775 original size:718 final size:711
Alignment explanation
Indices: 18408214--18409684 Score: 2066
Period size: 718 Copynumber: 2.1 Consensus size: 711
18408204 CGATCTTGCT
* ** * *
18408214 GCCGCAACCCTCGATCC-AGTCTGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
1 GCCGCAACCCTCGGTCCGA-TCCAATCTTAGAGTGGGAATGAACTCCGTATGCCTAA-CCAACCG
** * * * * *
18408278 ATGAAACGA--G---CGGGCGGGCGGGCGAGCACTACGCC-GACCAGAGAGACGGGATGCTCAAG
64 ACAAAACGAGCGATCCGGGCCGACGGGCGGGCACTACGCCAG-CCACAGAGACGGGATGCGCAAG
* * * *
18408337 TCGTGGATCGATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
128 CCGTGGATCGATCGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTACATGCCAATGCCAT
18408402 TTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTAACGTGAAGTTTCATGGCAAGACG
193 TTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTAACGTGAAGTTTCATGGCAAGACG
**
18408467 ACTCGTTTTCTATTTTCACGATTTTTAAAACTTTTTGTGGTTCAGGATATTTTAAAATTTTTTCA
258 ACTCGTTTTCTATTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATATTTTAAAATTTTTTCA
* *
18408532 AAAGAAATTGTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAA
323 AAAGAAATTGTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * * *
18408597 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCAGTTCAG
388 AATCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGACCAATCGAAAAAAGTGTCCCCAGTTCAG
*
18408662 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTACGGGGGTGTGAGTT
453 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
18408727 TTCAAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCAATGCACATCA
518 CTCAAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCAATCCACATCA
*
18408792 TGTGCGCACACCCCCCCGGCACCCCCAATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGA
583 TGTGCGCACACCCCCCCGGCACCCCCAATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCC-A
* * *
18408857 CGATGCTTCGATGATGGAGCCCCTGCAAAAAAAATGTAGCACCAACACATGTCTGAGCCCAACAT
647 CGA-G--TCGATGAT-G-GCCCCTGCAAAAAAAATGGAGCACCAACACATGCCCGAGCCCAACAT
18408922 GTGCG
707 GTGCG
* * *
18408927 GTCGTAACCCTCGTTCCGATCCAATCTTAGAGTGGGAATGAACTCCGTATGCCTAACCCAACCGA
1 GCCGCAACCCTCGGTCCGATCCAATCTTAGAGTGGGAATGAACTCCGTATGCCTAA-CCAACCGA
*
18408992 CAAAACGAGCGATCCGGGCGGACGGGCGGGCACTACGCCAGCCACAGAGACGGGATGCGCAAGCC
65 CAAAACGAGCGATCCGGGCCGACGGGCGGGCACTACGCCAGCCACAGAGACGGGATGCGCAAGCC
*
18409057 GTGGATCGATCGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTACGTGCCAATGCCATTT
130 GTGGATCGATCGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTACATGCCAATGCCATTT
* *
18409122 TTATGGCTTGT-AGATTCATACAATGGTCCCTTAAGCCTTCACGT-AGAGTTTCATGGCAAGGCG
195 TTATGGCTTGTGA-ATTCATACAATGGTCCCTTAAGCCTTAACGTGA-AGTTTCATGGCAAGACG
* * *
18409185 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-GAGATTTTTTAAAATTTTTT
258 ACTCGTTTTCTA-TTTTCACGATTTTTAAAACTTTTTACGGTTCAG-GATATTTTAAAATTTTTT
** ** *
18409249 CGGAAG-GGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
321 CAAAAGAAATTGTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
18409313 AAAATCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGACCAATCGAAAAAAGTTTCCCCA-TTC
386 AAAATCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGACCAATCGAAAAAAGTGTCCCCAGTT-
18409377 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
450 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
18409442 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC-ATCCCAC
515 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCAAT-CCAC
* * * * *
18409506 ATCATGTGTGCACACCCCCCCGG-GCCCCCGATTGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
579 ATCATGTGCGCACACCCCCCCGGCACCCCCAATCGCCGGAACCCCAATGCCGCCGATCAGGTTCT
* * *
18409570 -C-CG-G-CGATGCT-G-CCCTGCGAAAAAAAATGCGAG-ACCAGCACATGCCCGAGCCCAGCAT
644 CCACGAGTCGATGATGGCCCCTGC-AAAAAAAATG-GAGCACCAACACATGCCCGAGCCCAACAT
*
18409628 GTGCT
707 GTGCG
* * * *
18409633 GCCGCAACCCTCGGTCTGGTCCAATCTTAGATTGGGAATGAACTCTGTATGC
1 GCCGCAACCCTCGGTCCGATCCAATCTTAGAGTGGGAATGAACTCCGTATGC
18409685 TTACACTGGG
Statistics
Matches: 679, Mismatches: 64, Indels: 37
0.87 0.08 0.05
Matches are distributed among these distances:
705 6 0.01
706 81 0.12
707 2 0.00
709 6 0.01
712 1 0.00
713 61 0.09
714 3 0.00
715 1 0.00
716 1 0.00
717 42 0.06
718 426 0.63
719 49 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (711 bp):
GCCGCAACCCTCGGTCCGATCCAATCTTAGAGTGGGAATGAACTCCGTATGCCTAACCAACCGAC
AAAACGAGCGATCCGGGCCGACGGGCGGGCACTACGCCAGCCACAGAGACGGGATGCGCAAGCCG
TGGATCGATCGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTACATGCCAATGCCATTTT
TATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTAACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATATTTTAAAATTTTTTCAAAA
GAAATTGTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAAT
CAGCTAAAAACTCGAAGTGCACAAGATTTTGTGACCAATCGAAAAAAGTGTCCCCAGTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
AAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCAATCCACATCATGT
GCGCACACCCCCCCGGCACCCCCAATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCACGAG
TCGATGATGGCCCCTGCAAAAAAAATGGAGCACCAACACATGCCCGAGCCCAACATGTGCG
Found at i:18411264 original size:701 final size:697
Alignment explanation
Indices: 18409829--18411299 Score: 2097
Period size: 701 Copynumber: 2.1 Consensus size: 697
18409819 TGAACCCTCA
* * * * * *
18409829 GTCTGATCCAATCTTAGACTGGGAATGAACTCCGTAGGCCTAAGCCAACAGACGAAATGAGCTGG
1 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
*
18409894 TGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
66 CGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
18409959 AGGTGGGTTTAGGAAAATCTTCATATTTCTACGTGCTAATGCCATTTTTATGGCTTGTAAATTCA
131 AGGTGGGTTTAGGAAAATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
18410024 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
196 TACAATGGTCCCTTAAACCTTCACGTGAAGCTTCATGGCAAGACGACTCATTTTCTATTTTTCAC
* * *
18410089 GATTTTTGAAACATTTCACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTTGCCCCAA
261 GATTTTTCAAACATTTCACGGTTCGAGATTTTTGAAAATTTTTTCAGAAGGATTTTTGGCCCCAA
* * * *
18410154 ACTTGGTAGACGTGATCCTTTATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAG
326 ACTTGGTAGACATGATCCTTTATTTTGGTTGGCATGCACAAAAAAATGAAGCTAAAAACTCAAAG
* * *
18410219 TGTACAAGTTTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
391 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGA
*
18410284 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGATA
456 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGATA
* *
18410349 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGGCACACCCCCCGGGCCC
521 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGGCACACACCCCGAGCCC
** *
18410414 CCCGATTGCCGAACCCCAATACCGCCGTTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAA
586 CCCGATCACCGAACCCCAATACCGCCGGTCAGGTTCTCCGGCGA--GTGCCCCGACGAAGAAAAA
** * * * *
18410479 TATGGCATCGGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTTG
649 TACAGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTTG
* *
18410528 GTCCGGTCCGATCTTCGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
1 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* **
18410593 CGGGCGGGCGGGCACTATGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
66 CGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * *
18410658 AGTTGGG-TTAGGCACATCTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
131 AGGTGGGTTTAGGAAAATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
18410722 TACAATGGT-CCTTAAAACC-TCACGTGGGAAGCTTCATGGC-AGA-TACTCATTTTCTATTTTT
196 TACAATGGTCCCTT-AAACCTTCACGT--GAAGCTTCATGGCAAGACGACTCATTTTCTATTTTT
* *
18410783 CAACGA-TTTTCAAAC-TTTTACGGTTC-AGGATTTTTGAAAATTTTTTCGGAAAGGAGTTTTTG
258 C-ACGATTTTTCAAACATTTCACGGTTCGA-GATTTTTGAAAATTTTTTCAG-AAGGA-TTTTTG
*
18410845 GCCCC-AA-TTGGTAGACAT-ATCCTTGTATTTTGGTTGGATCATAGCACAAAAAAAATGCAGCT
319 GCCCCAAACTTGGTAGACATGATCCTT-TATTTTGGTTGG--CAT-GCAC-AAAAAAATGAAGCT
*
18410907 AAAAAACTCAAAGTGTGC-AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
379 -AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
18410971 AATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
443 AATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
18411036 TTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGT-GCA
508 TTTGATGA-GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGGCA
* * *
18411100 CACACCCCGTCAGCCCCTCCGATCACCGAAACCCCAATGCCGTCGGTCAGGTTCTTCGGCGA-TG
572 CACACCCCG--AGCCCC-CCGATCACCG-AACCCCAATACCGCCGGTCAGGTTCTCCGGCGAGTG
** * ** **
18411164 CTTCGACGAAGAAAAATGCAGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAAGTCTTG
633 CCCCGACGAAGAAAAATACAGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTTG
* * * *
18411229 GTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
1 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
18411294 CGGGCG
66 CGGGCG
18411300 CTCAACTGGC
Statistics
Matches: 689, Mismatches: 65, Indels: 34
0.87 0.08 0.04
Matches are distributed among these distances:
695 7 0.01
696 50 0.07
697 42 0.06
698 85 0.12
699 140 0.20
700 138 0.20
701 185 0.27
702 5 0.01
703 8 0.01
704 29 0.04
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (697 bp):
GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
CGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
AGGTGGGTTTAGGAAAATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAACCTTCACGTGAAGCTTCATGGCAAGACGACTCATTTTCTATTTTTCAC
GATTTTTCAAACATTTCACGGTTCGAGATTTTTGAAAATTTTTTCAGAAGGATTTTTGGCCCCAA
ACTTGGTAGACATGATCCTTTATTTTGGTTGGCATGCACAAAAAAATGAAGCTAAAAACTCAAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGA
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGGCACACACCCCGAGCCC
CCCGATCACCGAACCCCAATACCGCCGGTCAGGTTCTCCGGCGAGTGCCCCGACGAAGAAAAATA
CAGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTTG
Found at i:18412859 original size:26 final size:26
Alignment explanation
Indices: 18412830--18412882 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18412820 CCGTTCCGAT
18412830 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
18412856 CTTAGACTGGGAATGAACACTGTATG
1 CTTAGACTGGGAATGAACACCGTATG
18412882 C
1 C
18412883 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:18413735 original size:26 final size:26
Alignment explanation
Indices: 18413706--18413758 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18413696 CCAATCCGAT
* *
18413706 CTTAGACTGGGAATGATCTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
*
18413732 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
18413758 C
1 C
18413759 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:18414414 original size:877 final size:879
Alignment explanation
Indices: 18412098--18414518 Score: 3271
Period size: 898 Copynumber: 2.7 Consensus size: 879
18412088 GTGCTGCCGT
* * ** *
18412098 AACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAA
1 AACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
18412163 CGA--GCAGG-CAGGCGGGCGGGCATTACACCGGCCAGAGAGA-GGGATGCGCAAGCCGTGGATC
66 CGAGGGC-GGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * * *
18412224 GATAGGATGGTTGGTGGGTTTAGTCACATCTTCATATTTTTGCATGCCAATGCCATTTTTGTGGC
130 GATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
18412289 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTT
195 TTGTAAATTCATACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTT
* *
18412354 CTATTTTTCATGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGT
259 CTATTTTTCACGATTTTTAAAACTTTTTACGG-TTCGGATTTTTTAAAATTTTTTCAGAAGGAGT
* * * *
18412419 TTTGGACCCAAACTTGCTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAAATCAGCT
323 TTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
* * * *
18412484 AAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTTAGACTCTTTA
388 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
18412549 AGGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGT
453 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
18412614 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT-A-GTGCTCG
518 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTG--CG
* * *
18412677 CACACCCCCCGGTCCCCCCGATCGTCAGAACCCCAATACCGCTGTCAGGTTCTCCGACGATGCTC
581 CACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGC-GTCAGGTTCTCCGACGATG--C
* ** * *
18412742 TAGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCTTGAGCCCAGCTTGTGCTGC
642 T--C-ATGGTG-CCC-AC--------A-GT-GCACCAGCACATACCCGAGCCCAGCATGTGATGC
** * *
18412807 CACAACCCTCGGTCCGTTCCGATCTTAGACTGGGAATGAACACCGTATGCTTAGACTGGGAATGA
692 CACAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACACCATATGCTTACACTGGGAATGA
* * ** * *
18412872 ACACTGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTCATCTGACCAGAGGGGCGAG
757 ACACCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACCAGAGGGGCGAG
* * ** * *
18412937 ATGCGCAAGCCGGGGATCGACCGTGTCCCCATCTGCCTGCTGCCGGTCCTACTTTTGC
822 ATGCGCAAGCCGGGGATCGACCGGGTCCCCATCTGCCTGCTACCGAACCTACTATCGC
** ** *
18412995 AACCCTCGATCTGGTCTGATCTTAGACCAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
1 AACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
*
18413060 CGA--GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
66 CGAGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * * * *
18413123 ATAGGGTGGTAGGTGGGTTTAGGCAGATCTTCATATTTCTGCATGCCAGTGCCATTTTTATGTCC
131 ATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
*
18413188 TGTAAATTCATACAATGGTCCCTAAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTC
196 TGTAAATTCATACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTC
* * * *
18413253 TATTTTTCACGATTGTCAAAACTTTTTACGGTTCGAGATTTTTCAAAATTTTTTCAGAAAGAGTT
260 TATTTTTCACGATTTTTAAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCAGAAGGAGTT
* * * * * *
18413318 TTGGTCCCAACCTTGGTAGATGTGATCCTCGTATTTTTTTTGGCTTGCACAAAAAAATTCAGCAA
324 TTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
* *
18413383 AAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAA
389 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
18413448 TGGTTGCTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
454 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
18413513 TGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCACAC
519 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCAC
* *
18413578 ACCCCCCAGGCCCCCCCGATCACCGGAACCCCAATGTCGTCGATCAGGTTCTCCGACGATGCTC-
584 ACCCCCC-GG-CCCCCCGATCGCCGGAACCCCAATGCCG-CG-TCAGGTTCTCCGACGATGCTCA
** *
18413642 T-G-G-CC-C-GT-CACCAGCACATACCCGAGCCCAGCATGTGATGCCGTAGCCCTCGGTCCAAT
645 TGGTGCCCACAGTGCACCAGCACATACCCGAGCCCAGCATGTGATGCCACAACCCTCGGTCCAAT
* * *
18413701 CCGATCTTAGACTGGGAATGATCTCCATATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTC
710 CCGATCTTAGACTGGGAATGAACACCATATGCTTACACTGGGAATGAACACCGTATGCCTAAGTC
* *
18413766 AACCCACGAAACGAGCGTACGGGCGCTCAACCGACC-GAAGGGGCGGGATGCGCAAGTCGGGGAT
775 AACCCACGAAACGAGCGTACGGGCGCTCAACCGACCAG-AGGGGCGAGATGCGCAAGCCGGGGAT
* ** * *
18413830 TGATTGGGTCCCCAT-TGCGTGCTACCGAACCTACTATCGT
839 CGACCGGGTCCCCATCTGCCTGCTACCGAACCTACTATCGC
* *
18413870 AACCCTCAGTTC-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCGACGAA
1 AACCCTC-GATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
18413934 ACGAGTGGGCGGACGGGCAGGCGGGCACTACGCCAGCCAGAGAGACGAGATGCGCAAGCTGTGGA
65 ACGA--GGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
18413999 TCGATAGGCTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAGTTTTATG
128 TCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* **
18414064 GCTTGTAAATTCATACAATGGTGCTTCAAGCCTTCATTTGAAGTTTCATGGCAAGAC-ACTCGTT
193 GCTTGTAAATTCATACAATGGTCCTT-AAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTT
* * * *
18414128 TTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGC
257 TTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCAGAAGGA
* * * * *
18414193 TTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-GAAAAAATTTAG
321 GTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
18414257 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
386 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
18414322 TAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
451 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
18414387 GTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCACCGCACATCATGTGCG
516 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCG
* *
18414452 CCCACCACCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGC
581 CACA-C-CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCG-C-GTCAGGTTCTCCGACGATGC
18414517 TC
642 TC
18414519 CGGCGATGGT
Statistics
Matches: 1361, Mismatches: 144, Indels: 58
0.87 0.09 0.04
Matches are distributed among these distances:
875 76 0.06
876 169 0.12
877 244 0.18
878 115 0.08
879 166 0.12
888 1 0.00
890 2 0.00
892 1 0.00
893 1 0.00
894 1 0.00
896 3 0.00
897 96 0.07
898 437 0.32
899 27 0.02
900 22 0.02
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (879 bp):
AACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
ATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCT
ATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGATTTTTTAAAATTTTTTCAGAAGGAGTTTT
GGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACAC
CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCGTCAGGTTCTCCGACGATGCTCATGGTGC
CCACAGTGCACCAGCACATACCCGAGCCCAGCATGTGATGCCACAACCCTCGGTCCAATCCGATC
TTAGACTGGGAATGAACACCATATGCTTACACTGGGAATGAACACCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTACGGGCGCTCAACCGACCAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCGG
GTCCCCATCTGCCTGCTACCGAACCTACTATCGC
Found at i:18415369 original size:713 final size:715
Alignment explanation
Indices: 18413882--18415357 Score: 2189
Period size: 713 Copynumber: 2.1 Consensus size: 715
18413872 CCCTCAGTTC
* * * *
18413882 GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCGACGAAACGAGTGGGCGGA
1 GGTCCGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GA
* * *
18413947 CGGGCAGGCGGGCACTACGCCAGCCAGAGAGACGAGATGCGCAAGCTGTGGATCGATAGGCTGGT
65 C-GGCAGACGGGCACTACGCCAGCCAGAGAGACGAGAAGCGCAAGCCGTGGATCGATAGGCTGGT
*
18414012 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAGTTTTATGGCTTGTAAATTCA
129 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAGTTTTATGGCTTGTAAATACA
* * *
18414077 TACAATGGTGCTTCAAGCCTTCATTTGAAGTTTCATGGCAAGACACTCGTTTTCTATTTTTCACG
194 TACAATGGTCCTTCAAGCCTTCAATTGAAGTTTCATGGCAAGACACTCATTTTCTATTTTTCACG
* *
18414142 ATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGCTTTTTAGCCCCAAA
259 ATTTTTGAAACATTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGCGTTTTAGCCCCAAA
* ** * *
18414207 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAGAAAAAATTTAGCTAAAAACTCGAAGT
324 CTTGGTAGACATGATCCTTGTATTTTTGCTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGT
* **
18414272 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCA
389 GCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCA
18414337 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATA
454 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATA
* * * * *
18414402 GGGGGCCAATATAAGGGCCAAGTACCGGCACCCACCGCACATCATGTGCGCCCACCACCCCCGGC
519 GGGGCCCAATAGAAGGGCCAAGTACCAGCACCCACCGCACATCAAGTGCGCACACCACCCCCGGC
18414467 CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCC
584 CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCC
* * * * *
18414532 CCGGTGAAGAAAAATGCGGCACCAGCACATTCTCGAGCCCAGCATGTGCTGCCGCAACCCTTGGT
649 CCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGT
18414597 CT
714 CT
*
18414599 GGTCCGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACTGACGAAACGAGCGGGC-A-
1 GGTCCGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAC
* * * *
18414662 GGCAGACGGGCACTACGCC-GACCATAGAGACGGGAAGTGCAAGCCGTGGATCGATAGGGTGGTA
66 GGCAGACGGGCACTACGCCAG-CCAGAGAGACGAGAAGCGCAAGCCGTGGATCGATAGGCTGGTA
** *
18414726 GGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATACAT
130 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAGTTTTATGGCTTGTAAATACAT
**
18414791 ACAATGGTCCCTT-AAGCCTTCAATTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCGT
195 ACAATGGT-CCTTCAAGCCTTCAATTGAAGTTTCATGGCAAGAC-ACTCATTTTCTATTTTTCAC
* * * * *
18414855 GATTTTTGAAACATTTTGCGGTT-TGGGTTTTTTAAAATTTTTTTGGAAGGGGTTTTGGCCCCAA
258 GATTTTTGAAACATTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGCGTTTTAGCCCCAA
*
18414919 ACTTGGTAGACATGATCCTTGTATTTTTGCTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAA
323 ACTTGGTAGACATGATCCTTGTATTTTTGCTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAA
*
18414984 GTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCGCCA-TTCTAGACACTTTAACGGCTACTG
387 GTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAACGGCTACTG
* * * * *
18415048 GCAGCAATCTTGTCAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
451 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAG
* * *
18415113 ATAGGGGCCCAATAGAAGGGCCAAGTACCATCGCCCATCGCACATCAAGTGCGCACA-C-CCCCC
516 ATAGGGGCCCAATAGAAGGGCCAAGTACCAGCACCCACCGCACATCAAGTGCGCACACCACCCCC
* * * *
18415176 GGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGATGATGCTCCGGTGATGG
581 GGCCCCCC-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGG
* * * *
18415241 TG-CCCGGACGAAGAAAAATGTGGCATCAGCACATGCCCGAGCCCAGCATGTGCTGTCATAACCC
645 TGCCCCGG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCC
18415305 TCGGTCT
709 TCGGTCT
* * *
18415312 GG-CTCGATCTTAGACTGGGAATTAACTCTGTATGCCTAAGTCAACC
1 GGTC-CGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACC
18415358 CTCGGAACGA
Statistics
Matches: 683, Mismatches: 68, Indels: 20
0.89 0.09 0.03
Matches are distributed among these distances:
712 20 0.03
713 376 0.55
714 229 0.34
715 1 0.00
717 57 0.08
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (715 bp):
GGTCCGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAC
GGCAGACGGGCACTACGCCAGCCAGAGAGACGAGAAGCGCAAGCCGTGGATCGATAGGCTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAGTTTTATGGCTTGTAAATACATA
CAATGGTCCTTCAAGCCTTCAATTGAAGTTTCATGGCAAGACACTCATTTTCTATTTTTCACGAT
TTTTGAAACATTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGCGTTTTAGCCCCAAACT
TGGTAGACATGATCCTTGTATTTTTGCTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGC
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGG
GGCCCAATAGAAGGGCCAAGTACCAGCACCCACCGCACATCAAGTGCGCACACCACCCCCGGCCC
CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCC
GGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCT
Found at i:18416226 original size:26 final size:26
Alignment explanation
Indices: 18416197--18416249 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18416187 CTGGTCCGAT
18416197 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18416223 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18416249 C
1 C
18416250 CAAAGGCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18416830 original size:26 final size:26
Alignment explanation
Indices: 18416801--18416850 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18416791 CCGGTTCGAT
* *
18416801 CTTAGACTGGGAATGAACTTCGTACG
1 CTTAGACTAGGAATGAACTCCGTACG
18416827 CTTAGACTAGGAATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
18416851 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTACG
Found at i:18418650 original size:26 final size:26
Alignment explanation
Indices: 18418598--18418650 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18418588 CTGGTCCGAT
**
18418598 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCACATG
*
18418624 CTTAGACTGGGAATGAACTCCACATG
1 CTTAGACTGAGAATGAACTCCACATG
18418650 C
1 C
18418651 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCACATG
Found at i:18419261 original size:884 final size:885
Alignment explanation
Indices: 18416773--18419491 Score: 3696
Period size: 903 Copynumber: 3.1 Consensus size: 885
18416763 TTGTGAATGC
* * *
18416773 GCTGTCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTTCGTACGCTTAGACTAGG
1 GCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGG
* * *
18416838 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCTTGTG-GGCGCTCAGCCGGCTAGAGG
66 AATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGC--GTGCGGCGCTCAACCGGCAAGAGG
* * * * * *
18416902 GGCGAGATGCGCAAGTCGGGGATCGATCGAGTCCCCCTCTACGTGCTGT-CGATCTTGCTGCCCC
129 GGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTTTACGTGCT-TCCGATCCTGCTGCCAC
*
18416966 AACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
193 AACCCT--GTCCGGTC-CA-CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * *
18417031 CGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAG-GATGCGTAAGCCTTGGATCGATAGG
254 CGAGCGTGCGGGCGGGCACTACGCCGGCCA-AAAGAC-GTAATGCGCAAGCCGTGGATCGATAGG
**
18417095 GTGGTAGGTTAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
317 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* * * *
18417160 ATTCATACAATTGTCCTTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTCTCTATTG
382 ATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
*
18417225 TTCATGATTTTCT-AAACTTTTTACGGTTCAGGATTTTTTAAAATTCTTTT-GGAAGGAGTTTTA
447 TTCATGATTTT-TGAAACTTTTTACGGTTCAGGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTG
* * * * *
18417288 ACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCAAAAAAAAATTCAGCTAAAA
510 GCCTCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
*
18417353 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGG
575 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * * *
18417418 CTACTGGCAGCAAACCTGTAAAATCTCAAATGGTCTTTAAGGGGGTGTGGGCTCTCGAGGTTTGA
640 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
*
18417483 T-AGGGGATAGGAGGCCAAAATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGTGCACAC
705 TGA-GGGATAGG-GGCC-AAATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACAC
* * * *
18417547 CCCCCGGGCCCCCGATCGTCGGAAACCTCAATGCCGCCGGTCAGGTTCTTCGGCAATGCTCTGAC
767 CCCCC-GGCCCCCGATCGTCGG-AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGC
* * *
18417612 GATGGTGCCCCGATGAAGAAAAATGCCGCACCAGCACATGCCCGTGCCCAGCATGT
830 GATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCATGT
* * * *
18417668 GCTGACGCCACCCTCGGTCCGGTCCGATCATACACTGGGAATGAACTCCGTACGCTTAGACTGGG
1 GCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGG
18417733 AATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGGCAAGAGGG
66 AATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGC-GGCGCTCAACCGGCAAGAGGG
* * * * * **
18417798 GCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTTTATGTGCTGCCGATCCTGCTACCGTAA
130 GCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTTTACGTGCTTCCGATCCTGCTGCCACAA
* *
18417863 CCCTCAGTCCGGTCCGATCTTAGAATGGGAATGAAGTCCGTATGCCTAAGCCAACCGACGAAACG
195 CCCT--GTCCGGTCC-A-CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
*
18417928 AGCGGGTGGGCGGGCAGGCGGGCACTATGCCGGCCAGAAAGA--TAGGATGCGCAAGCCGTGGAT
256 AGC--GT--GC--G--GGCGGGCACTACGCCGGCCA-AAAGACGTA--ATGCGCAAGCCGTGGAT
*
18417991 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCATGCCAATGCCATTTTTATGG
310 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* *
18418056 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCGTTT
375 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTT
* * * **
18418121 TCTATTTTTCACGATTTATGAAACTTTCTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAG
440 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAG
*
18418186 TTTTGG-CTCCAAACTTGGTAGACGTGATCCTTGTAATTTTTTTGGCATGCACAAAAAAATTCAG
505 TTTTGGCCT-CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
*
18418250 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCAATTGAAAAAAGTGTCCCCATTTCAGACACTT
569 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
18418315 TAATTGCTACTGGCAGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
634 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
* *
18418380 GTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
699 GTTTGATGAGGGATA-GGGGCCAA-ATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCG
* * *
18418445 CACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTC
762 CACACCCCCCGG-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC
* * * ** *
18418510 CGGTGATGGCGCCCCGACAAAGAAAAATGCAGCACCAGCACATGCCCAAGCCTAGCATGT
826 TGGCGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCATGT
* * * *
18418570 GCTGTCGTAACCCTCGGTCTGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGG
1 GCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGG
** *
18418635 AATGAACTCCACATGCCTAAGTCAACCCACGAAATGAGCGTGCGG-GCTCAACCGGTC-AGAGGG
66 AATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGCGCTCAACCGG-CAAGAGGG
* * * * * *
18418698 GCGGGATGCGCAAGTCGAGGATCGGCCGGGTCCCCCTTTGCATCCTTCCGATCGTGCTGCCACAA
130 GCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTTTACGTGCTTCCGATCCTGCTGCCACAA
* * *
18418763 -CCT-T-CGATCCA-GTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCA
195 CCCTGTCCGGTCCACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * *
18418824 TGCGGGCGGGCACTACGTCGGCCAAATAGACGTAATGCGCAAGTCGTGGATCGATAGGCT-GTAG
260 TGCGGGCGGGCACTACGCCGGCCAAA-AGACGTAATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*** *
18418888 GTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCTTA
324 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
18418953 CGATGGTCCCTTAAGCCTTCACATGAGGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGA
389 CAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * * *
18419018 TTTTTGAAACTTTTTACGGTTCAAGATTTTGTAAAATTTTTTCGAAAGGAGTTTTGGCCTCAAAT
454 TTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCTCAAAC
* * *
18419083 TTGGTAGACGTGATCCTTGTGTTTTTTTTTGGCATGCACAAAAAAATTCAGGTAAAAACTCAAAG
519 TTGGTAGACGTGATCCTTGT-ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * * *
18419148 TGTATAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCCACTGGC
583 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
18419213 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
648 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
*
18419278 A--GG--------GGGCCAAGTACCAGCACCCATTGCATATCATGTGCGCACACCCCCC-GCCCC
713 AGGGGCCAAATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCC
* * *
18419332 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCTGGCAATGGTGCCCCGG
778 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGA
* *
18419397 TGAAGAAAATTG-AGGCACCAGCACATGCTCGAGCCCT-GCATGT
843 TGAAGAAAAATGCA-GCACCAGCACATGCCCGAG-CCTAGCATGT
* * * * * * *
18419440 GCTGCCGCAAGCCTCGGTCTGGTCCAATCTCAGACTCGGATTGAACTCCGTA
1 GCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
18419492 TGCCTAAGCC
Statistics
Matches: 1626, Mismatches: 168, Indels: 85
0.87 0.09 0.05
Matches are distributed among these distances:
869 1 0.00
870 136 0.08
871 4 0.00
872 44 0.03
881 2 0.00
883 199 0.12
884 210 0.13
886 3 0.00
888 2 0.00
890 1 0.00
892 46 0.03
893 3 0.00
894 1 0.00
895 235 0.14
896 1 0.00
897 1 0.00
899 5 0.00
900 68 0.04
901 4 0.00
902 190 0.12
903 467 0.29
904 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (885 bp):
GCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGCGCTCAACCGGCAAGAGGGG
CGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTTTACGTGCTTCCGATCCTGCTGCCACAAC
CCTGTCCGGTCCACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGT
GCGGGCGGGCACTACGCCGGCCAAAAGACGTAATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
TTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCTCAAACTT
GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
GGCCAAATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCGA
TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGATGA
AGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCATGT
Found at i:18421198 original size:870 final size:870
Alignment explanation
Indices: 18419461--18421834 Score: 3890
Period size: 870 Copynumber: 2.7 Consensus size: 870
18419451 CCTCGGTCTG
* * * * * * *
18419461 GTCCAATCTCAGACTCGGATTGAACTCCGTATGCCTAAGCCAACTGACAAAACGAGCGGGTGGGC
1 GTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * * * *
18419526 GGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTA
66 GAGCGAGCGGGCACTACGCCGGCCAAAGAGACGGGATACGCAAGCTGTGGATCGATA-GGTGGTA
* * * * * *** *
18419591 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTTTACTTTTATGGCTTGTAAATTCAT
130 GGTTGGTTTAGGCGCATCTTCATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
18419656 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
195 ACAATGGTCCCTTAAGCCTTCATGTGAA----AAT-GCAAGACGACTCGTTTTCTATTTTTCACA
** * * * * * * * *
18419721 ATTTTCAAAACCTTTTGCGATTCGAGATTTTTTAATAT-TTTTTGGAAAGGAGTTTTTGCCCCAA
255 ATTTTTGAAACTTTTTACGGTACGAGATTTTTTAAAATCCTTTCGG-AAGGAGTTTTGGCCCCAA
* * * *
18419785 ACTTGGTAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTT-AAAACTCGA
319 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAGAATCAG-TTAAAAACTTGA
*
18419849 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
383 AATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * * *
18419914 ACAGCAAACCTGTAAAATCTCAAATTCTCTTGAAAGGGGTGTGAGTTCTAGAGGTTTGATGAGGG
448 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
18419979 ATAGGGGG-CAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
513 ATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * * * *
18420043 CCCCCCACGATCGTCGGAACCCCAATGCCGCCGGTAAGGTTCTCCGGCAATGCTCCGACGATGGT
578 CCCCCC-CGATCG-CTGAACCCCAATGCCGTCGGTCAGGTTCTTCGGCGATGCTCCGACGATGGT
*
18420108 GCCCCGACAAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTC
641 GCCCCGACAAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACTGCAACCCTC
*
18420173 GGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCTT
706 GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCTT
* * * *
18420238 GCGGGCGCTCAGTCGGCCAGAGGGGCGCGATGCACAAGCCAGGGATCGGCCGGTTCCCCCTCTGC
771 ACGAGCGCTCAGTCGGCCAGAGGGGCGCGATGCACAAGCCAGGGATCGACCGGTTCCCCCTCTAC
* * * * *
18420303 GTGTTGTTGGTCCTGCTGTCGTAACCGTTGGTCCA
836 GTGCTGCTGGTCCTACTATCGTAACCCTTGGTCCA
18420338 GTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
1 GTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
*
18420403 GAGCGAGCGGGCACTACGCCGGCCAAAGAGACGAGATACGCAAGCTGTGGATCGATAGGTGGTAG
66 GAGCGAGCGGGCACTACGCCGGCCAAAGAGACGGGATACGCAAGCTGTGGATCGATAGGTGGTAG
* *
18420468 GTTGGTTTAGGCGCATCTTCATATTTTTACGTGCCAATGCCATTTTTACGGCTTGAAAATTCATA
131 GTTGGTTTAGGCGCATCTTCATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
18420533 CAATGGTCCCTTAAGCCTTCATGTGAAAATGCAAGATGACTCGTTTTCTATTTTTCACAATTTTT
196 CAATGGTCCCTTAAGCCTTCATGTGAAAATGCAAGACGACTCGTTTTCTATTTTTCACAATTTTT
18420598 GAAACTTTTTACGGTACGAGATTTTTTAAAATCCTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
261 GAAACTTTTTACGGTACGAGATTTTTTAAAATCCTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
18420663 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAGAATCAGTTAAAAACTTGAAATGTACA
326 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAGAATCAGTTAAAAACTTGAAATGTACA
18420728 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
391 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
18420793 CCTGTAAAATCTCAAATGCTCTTTAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
456 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
18420858 CCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGCCCCCCCG
521 CCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
** **
18420923 ATCGCTGAACCCCAATGCCGTCGGTCAGGTTCTTCGGCGATGCTTTGACGATGGTGCCCCGGGAA
586 ATCGCTGAACCCCAATGCCGTCGGTCAGGTTCTTCGGCGATGCTCCGACGATGGTGCCCCGACAA
* *
18420988 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACTGCAACCCTCGGTCTGGTCT
651 AGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACTGCAACCCTCGGTCTGGTCC
*
18421053 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCTTACGAGCGCTC
716 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCTTACGAGCGCTC
* *
18421118 AGTCGGCCAGAGGGGCGCGATGCACAAGCCGGGGATCGACCGGTTCCCCCTCTATGTGCTGCTGG
781 AGTCGGCCAGAGGGGCGCGATGCACAAGCCAGGGATCGACCGGTTCCCCCTCTACGTGCTGCTGG
18421183 TCCTACTATCGTAACCCTTGGTCCA
846 TCCTACTATCGTAACCCTTGGTCCA
18421208 GTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
1 GTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
*
18421273 GAGCGAGCAGGCACTACGCCGGCCAAAGAGACGGGATACGCAAGCTGTGGATCGATAGGTGGTAG
66 GAGCGAGCGGGCACTACGCCGGCCAAAGAGACGGGATACGCAAGCTGTGGATCGATAGGTGGTAG
18421338 GTTGGTTTAGGCGCATCTTCATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
131 GTTGGTTTAGGCGCATCTTCATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
18421403 CAATGGTCCCTTAAGCCTTCATGTGAAAATGCAAGACGACTCGTTTTCTATTTTTCACAATTTTT
196 CAATGGTCCCTTAAGCCTTCATGTGAAAATGCAAGACGACTCGTTTTCTATTTTTCACAATTTTT
18421468 GAAACTTTTTACGGTACGAGATTTTTTAAAATCCTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
261 GAAACTTTTTACGGTACGAGATTTTTTAAAATCCTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
*
18421533 AGACGTGATCCTTATATTTTTTTTGGCATGCACAAAAAGAATCAGTTAAAAACTTGAAATGTACA
326 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAGAATCAGTTAAAAACTTGAAATGTACA
18421598 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
391 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
18421663 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
456 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
18421728 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCAGCCCCCCCG
521 CCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* *
18421793 ATCGCTAAAACCCAATGCCGTCGGTCAGGTTCTTCGGCGATG
586 ATCGCTGAACCCCAATGCCGTCGGTCAGGTTCTTCGGCGATG
18421835 GTGCCCCGAT
Statistics
Matches: 1405, Mismatches: 89, Indels: 13
0.93 0.06 0.01
Matches are distributed among these distances:
870 872 0.62
871 269 0.19
872 68 0.05
876 88 0.06
877 108 0.08
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (870 bp):
GTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
GAGCGAGCGGGCACTACGCCGGCCAAAGAGACGGGATACGCAAGCTGTGGATCGATAGGTGGTAG
GTTGGTTTAGGCGCATCTTCATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCATGTGAAAATGCAAGACGACTCGTTTTCTATTTTTCACAATTTTT
GAAACTTTTTACGGTACGAGATTTTTTAAAATCCTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAGAATCAGTTAAAAACTTGAAATGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
ATCGCTGAACCCCAATGCCGTCGGTCAGGTTCTTCGGCGATGCTCCGACGATGGTGCCCCGACAA
AGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACTGCAACCCTCGGTCTGGTCC
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCTTACGAGCGCTC
AGTCGGCCAGAGGGGCGCGATGCACAAGCCAGGGATCGACCGGTTCCCCCTCTACGTGCTGCTGG
TCCTACTATCGTAACCCTTGGTCCA
Found at i:18421955 original size:26 final size:26
Alignment explanation
Indices: 18421919--18421971 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18421909 CCAGTTCGAT
*
18421919 CTTAGACTGGGAATGAACTTCTTATG
1 CTTAGACTGGGAATGAACTTCGTATG
18421945 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
18421971 C
1 C
18421972 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:18422238 original size:172 final size:171
Alignment explanation
Indices: 18422023--18422387 Score: 410
Period size: 172 Copynumber: 2.1 Consensus size: 171
18422013 CAGAGAGGCA
* * * *
18422023 GGATGCGCAAGCCGAGGATCGGCCTGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCA-CAACC
1 GGATGCGCATGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTG-TGACAGCAACC
* * * * *
18422087 CTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTACGTAAGCCTAAGCCAATCGATGAAACGAG
65 CTCGGTCCGATCCGATCTTAGACTAGGAATGAACTACATAAGCCTAAGCCAATCGACGAAACGAG
*** * * *
18422152 TGGGCGGGCT-GGCGGGCGGGCACTACACCGGACCAGAGAGATG
130 CAAGC-GGATGGGCGGACGGGCACTACACCGG-CCAGAGAGAAG
* * * * * ** *
18422195 GGATGCGCATGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGTTACAGTGAGCC
1 GGATGCGCATGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGTGACAGCAACCC
* * * *
18422260 TCGGTCCGATCCGATTTTAGACTAGGAATGAACTCCATATGCGTAAGCCAATCGACGAAACGAGC
66 TCGGTCCGATCCGATCTTAGACTAGGAATGAACTACATAAGCCTAAGCCAATCGACGAAACGAGC
* *
18422325 AAGCGGATGGGCGGACGGGCACTACGCCTGCCAGAGAGAAG
131 AAGCGGATGGGCGGACGGGCACTACACCGGCCAGAGAGAAG
* *
18422366 GGATGCGCATACCGTGGATCGA
1 GGATGCGCATGCCGAGGATCGA
18422388 TAGGGTGGTA
Statistics
Matches: 159, Mismatches: 32, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
171 35 0.22
172 124 0.78
ACGTcount: A:0.22, C:0.28, G:0.32, T:0.18
Consensus pattern (171 bp):
GGATGCGCATGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGTGACAGCAACCC
TCGGTCCGATCCGATCTTAGACTAGGAATGAACTACATAAGCCTAAGCCAATCGACGAAACGAGC
AAGCGGATGGGCGGACGGGCACTACACCGGCCAGAGAGAAG
Found at i:18423910 original size:26 final size:26
Alignment explanation
Indices: 18423874--18423926 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18423864 CTGGTTCGAT
* *
18423874 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACCCCGTATG
*
18423900 CTTAAACTGGGAGTGAACCCCGTATG
1 CTTAAACTGGGAATGAACCCCGTATG
18423926 C
1 C
18423927 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACCCCGTATG
Found at i:18424290 original size:889 final size:888
Alignment explanation
Indices: 18422194--18427497 Score: 6159
Period size: 879 Copynumber: 6.0 Consensus size: 888
18422184 CCAGAGAGAT
* * * ** * * * * ** *
18422194 GGGATGCGCATGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGTTACAGTGAGC
1 GGGATGCGTAAGCCGGGGATCGGTCGGGT-CCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACC
* * * * * * * * *
18422259 CTCGGTCCGATCCGATTTTAGACTAGGAATGAACTCCATATGCGTAAGCCAATCGACGAAACGAG
65 CTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAAC--G
* *
18422324 CAAGCGGATGGGCGGACGGGCACTACGCCTGCCAGAGAGAAGGGATGCGCATA-CCGTGGATCGA
128 --AGC-GA---G-GG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA-AGCCGTGGATCGA
* * * * **
18422388 TAGGGTGGTAGGTAGGTTTAGGCACATGTTCATATTTCAGCGTGCCAATGCCATTTTTATTTCTT
184 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * *
18422453 GTAAATTCATACAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTCCT
249 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * *
18422518 ATTTTTCAAGATTTTTGAAACTTTTTGTC-GTTCGAGATTTTTTAAAATTTTTTCAGAAGGAATT
314 ATTTTTCATGATTTTTGAAACTTTTTG-CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * *
18422582 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCTCAACAAAATTCAGCTA
378 TTGTCCCCAAACTT-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
18422647 AAAACTCAAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
442 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
**
18422712 TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAAATT
507 TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
*
18422776 TGATGAGGGATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
572 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * * *
18422841 ACCCCCCCGACCCCCTCGATCGTCGTAACCCTAATACCGCCGGTCAGGTTCT-C--C---G---G
637 ACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTTG
*** ** *
18422897 CGATGGTGCCCCAATGAAGAAAAATGTAGCACCAGCACATG-CCGAGCCCGGCATGTGCTGCCGC
702 CGATGGTG-CCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
** * * * * * * *
18422961 AACCCTCGGTCCAATCCGATTTTAGATTGGGTATCAACTCTGTATGCTTAGACTAGGAATGAACT
766 AACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACC
* * *
18423026 CCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCAAAGGGGC
830 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * *
18423085 GGGATGCGTAACCCGGGGATCGGTGGGGTCCCGCTCTGCGTGCTGCCGATCTTGTTGCTGTAACC
1 GGGATGCGTAAGCCGGGGATCGGTCGGGTCCC-CTCTGCGTGCTGCCGATCCTGCTGCTGCAACC
* *
18423150 CTCGGTAT-GGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACA-AAATG
65 CTCGGT-TCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-AGAAACG
* * *
18423213 AGCGGACGGACAGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTG
128 AGC-GA-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
*
18423278 GTAGGTGCGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
191 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* * * *
18423343 CTTACAATGGTCCCTTAAACCTTCACGTGAAGCTTCATGGTAAGACGACTCGTTTTCTATTTTTC
256 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* ** * *
18423408 ACGATTTTCAAAACTTTTTACGGTTCGGGATTTCTTAAAATTTTTTCGGAAGGAGTTTTGTCCCC
321 ATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGTCCCC
* * * * *
18423473 AAACTT-TAGACATTATCCTTGTATTCTTGTTGGCACGTACAAAAAAATTCAGCTAAAAACTCAA
386 AAACTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
18423537 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
451 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * **
18423602 GCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
516 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
** *
18423667 ATAGGGGGAAAATATAAGGGCCAAGTACCAGAACCCATCGCACAT-ATGTGCGCACACCCCCCCC
581 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCC
* * * *
18423731 GGCCCCCCCGATCGTTGGAACCCCGATGCCGTCGGTCAGGTTCTCTGGCGATGCTCTAGCGATGG
645 GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT-T-GCGATGG
**
18423796 TGCCCGGCGAAGAAAAATGCGGCACCAAGCACATAG-CCGAGCCCAGCATGTGCTGCCATAA-CC
708 TGCCCGGCGAAGAAAAATGCGGCACC-AGCACAT-GCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * *
18423859 TCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAGTGAACCCCGTA
771 TCGGTCCGG-TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACCCCGTA
*
18423924 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGC
835 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * * * *
18423978 GAGATGCGTAAGCCAGGGATTGGTCGGGTCCACCTCTCCGTGCTGTCGATCCTACTACCGCAACC
1 GGGATGCGTAAGCCGGGGATCGGTCGGGTCC-CCTCTGCGTGCTGCCGATCCTGCTGCTGCAACC
* * *
18424043 CTTGGTTCGGTCCAATCGTAGACTGCGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAG
65 CTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAG
*
18424108 C-A-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGCTAGGGTGGTAG
130 CGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
18424171 GTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGATTGTAAATTCATA
195 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
18424236 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCATTTTCTATTTTTCATGA
260 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * *
18424301 TTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTCTTCAGAAGGA-TTTTGGT-CCCAAA
325 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GTCCCCAAA
* * * *
18424364 CTAGGTATAGGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCAAAG
389 CT-TGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
* *
18424429 TGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGT
453 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
18424494 TGCAAACCTATAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
518 AGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
* * * * ** *
18424559 AAGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCACGTGCGTACAAACCACCGG-
583 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
* * * * *
18424623 CCCCCTGATCGCCGAAACCCCAATGCCGTCGG-CAGGTTCTCCGACGAGGCTCCGACGATGGTGC
648 CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT-TG-CGATGGTGC
* * *
18424687 CCAGGCGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA-CC-C--
711 CC-GGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
18424748 T-C-G--G----T---CT----A-G---TCCG-AT-CTTAGACTGGGAATGAACCCCGTATGCCT
775 TCCGGTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACCCCGTATGCCT
* **
18424792 AAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTTGGCCAGAGGGGC
840 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * ** * *
18424841 GGGATGCATAGGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCTACAACC
1 GGGATGCGTAAGCCGGGGATCGGTCGGGT-CCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACC
* *** * *
18424906 ATCGGTCTAC--TCTGTTCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATAGCAGAAACG
65 CTCGGT-T-CGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-A-A-CCG--A--
* * * *
18424969 AGCAAACGGGCGGGCGGACGGGCGGGCACTGCGTCGGCCAGAGAGACGGAATGCGCAAGCCGTGG
121 AG-AAA----CGAGC-GA-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
18425034 ATCGCTAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCTAATGCCATTTTTAT
179 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
18425099 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCAT
244 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
18425164 TTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTTGGGATTTTTTAAACTTTTTTCGCAAGG
309 TTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * *
18425229 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCATAAAAAAATTCA
374 AGTTTTGTCCCCAAACTT-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
18425294 GCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
438 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
18425359 TTAAGGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTCT-AG
503 TTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-
*
18425423 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCACATCATGTG
567 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* ** * *
18425488 CGCACACCCCCCCGGCCCCCTCGATCGTTAGAACCCAAATGCCG-CTGGTCAGGTTCTCCGACAA
632 CGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGA
* * * * *
18425552 TGCTCCGAGGATGGTGCCATGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGT
696 TGCT-TG-CGATGGTGCC-CGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * *
18425617 GCTGCCACAACCCTCGGTCCAGTCTGATATTA-ACTGGGAATGAACTCCGTAAGCTTAGACTGGG
758 GCTGCCGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * * * * * * *
18425681 ATTGAACTCCGTACGCCTAAGTCAACCCACAAAACGAGCATGCGGGCACTCAGTCGACTAGAGGG
822 AATGAACCCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
18425746 GC
887 GC
* ** * * * * * * *
18425748 GTGATAAGCAAGCTGGGGATCGATCGGGTCCTCCTCTCCGTGCTGCTGATCCTGCTACTGGAACC
1 GGGATGCGTAAGCCGGGGATCGGTCGGGTCC-CCTCTGCGTGCTGCCGATCCTGCTGCTGCAACC
* *
18425813 CTCAG-TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAA
65 CTCGGTTC-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA--AGA-AA
* * * * * *
18425877 CCATGCGGGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCTGTGTATCGA
126 CGA-GC--GAGGGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * * *
18425942 TAGGGTTGTAGCTGGGTTTAGGAACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTT
184 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * *
18426007 GTAAATTCATACAGTGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCT
249 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * * **
18426072 ATTTTTCAAGATTTTTGAAACTTTTTACGGTTTGGGATTTTTAAAAAATTTTTCGGAACAAGTTT
314 ATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * *
18426137 TGT---C---CTTGGTAGATGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTGAGCTAA
379 TGTCCCCAAACTT-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * * *
18426196 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTCCAAACACTTTAAT
443 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
18426261 TGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
508 GGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
* * * *
18426326 GATGAGGGACA-GGGGCCAATATAAGGGCCAAGTACCAGCACGCATGGCACATCATGTGTGCACA
573 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* ** **
18426390 -CCCCCCGG-CCCCCCAATCGTCAAAACCTTAATG-C--C-GTC-GG---T-C-A-G--G-TT-C
638 CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTTGC
* * *
18426438 -----T--CCGGCGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGTATGTGCTGCCGTAA
703 GATGGTGCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * * * *
18426496 CCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGAATGCTTAGACTGGAAATG-ACCTT
768 CCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACC-C
* * *
18426560 CGTATGCCTAAGTCAACCCATGAAACGACCGTGCGGGCGTTCAGCCGGCCAGAGGGG-
831 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * * **
18426617 GGGATGCGCAAGCCGGGGATC-GACTGGGACCCCTCTGCGTGCTACCAATCCTACTGCCACAACC
1 GGGATGCGTAAGCCGGGGATCGGTC-GGGTCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACC
* * * * * *
18426681 CTCGGTCCGATCTAATCTTAGACAGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACAAG
65 CTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAAC--G
** * * * *
18426746 CAGGTGGGCGAGCGGGCGGGCGGGCACTACGCTAGCTAGAGAGACGGGATGTGCAAGCCATCGAT
128 -A-----GCGA------GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
18426811 CGATAGGGTGGTAGGTGGGTTTAGGCACTTCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
181 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* *
18426876 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTC
246 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
18426941 TCTATTTTTCATGATTTTTGAAACTTTTTGCGGTGCGGGATTTTTTAAAATTTTTTCGGAGGGTG
311 TCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* *
18427006 TTTTGTCCCCAAACTTATTAGACATGATCAC-TGTATTTTTGTTGGCATGCATC-AAAAAATTCA
376 TTTTGTCCCCAAACTT-GTAGACGTGATC-CTTGTATTTTTGTTGGCATGCA-CAAAAAAATTCA
* * *
18427069 GCTAAAAACTCGAAGTGTAAAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACAC
438 GCTAAAAACTCAAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
18427134 TTTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
502 TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
18427199 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG-ACCCATCGCACATCATGTG
567 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
18427263 CACACACCCCTCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCAACGA
632 CGCACACCCC-CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* * * *
18427328 TGCTTCGGCGATGGTGCCCCGGGGAAGAAAAATGCGACGCCAGCACATGCCTGAGCCCAGCATGT
696 TGCTT--GCGATGGTG-CCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * *
18427393 GCTACCGCAACCCTCAGTCCGGTCTGATCTAAGACTGGGAATGAACTCTGTATGCTTAGACTGGG
758 GCTGCCGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
*** * * *
18427458 AATGAACTATGTATGCCTAAGCCAACCGACGAAATGAGCG
822 AATGAACCCCGTATGCCTAAGTCAACCCACGAAACGAGCG
18427498 AACGGGCGGG
Statistics
Matches: 3782, Mismatches: 478, Indels: 290
0.83 0.11 0.06
Matches are distributed among these distances:
863 158 0.04
864 6 0.00
865 9 0.00
866 3 0.00
868 76 0.02
869 92 0.02
870 83 0.02
871 3 0.00
872 220 0.06
873 2 0.00
874 1 0.00
875 5 0.00
876 5 0.00
877 1 0.00
878 63 0.02
879 367 0.10
880 276 0.07
881 187 0.05
882 211 0.06
883 229 0.06
884 3 0.00
885 5 0.00
886 5 0.00
887 12 0.00
888 73 0.02
889 271 0.07
890 225 0.06
891 110 0.03
892 23 0.01
893 228 0.06
894 44 0.01
895 10 0.00
896 51 0.01
897 185 0.05
898 1 0.00
899 7 0.00
900 3 0.00
901 3 0.00
902 7 0.00
903 219 0.06
904 4 0.00
905 6 0.00
906 5 0.00
907 283 0.07
908 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
GGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCC
TCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGC
GAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
TTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGTCCCCAAACT
TGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTTGCGATGGTGCCCGGC
GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACCCCGTATGCCTAAGTCA
ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
Found at i:18427453 original size:26 final size:26
Alignment explanation
Indices: 18427424--18427473 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18427414 GTCTGATCTA
*
18427424 AGACTGGGAATGAACTCTGTATGCTT
1 AGACTGGGAATGAACTATGTATGCTT
18427450 AGACTGGGAATGAACTATGTATGC
1 AGACTGGGAATGAACTATGTATGC
18427474 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (26 bp):
AGACTGGGAATGAACTATGTATGCTT
Found at i:18429082 original size:26 final size:26
Alignment explanation
Indices: 18429046--18429098 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18429036 CTGGTTCGAT
*
18429046 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18429072 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18429098 C
1 C
18429099 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18430458 original size:892 final size:871
Alignment explanation
Indices: 18427447--18432009 Score: 4994
Period size: 892 Copynumber: 5.2 Consensus size: 871
18427437 ACTCTGTATG
*
18427447 CTTAGACTGGGAATGAACTAT-GTATGCCTAAGCCAACCGACGAAATGAGCGAA-CGGGCGGGCG
1 CTTAGACTGGGAATGAACT-TCGTATGCCTAAGCCAACCGACGAAACGA---AAGCGGGCGGGCG
* * * * * *
18427510 GGCGGGCAGTACGTCGACCAAAGAGACGGGATGCGGAAGCTGTGGATTGATAGGGTGGTAGGTGG
62 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC-GTGGATCGATAGGGTGGTAGGTGG
* **
18427575 GTTTAGGCACATCTTCAAATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
126 GTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
18427640 GGTCCCTTAAGCCATCACGTGAAGTTTCATGACAAGATGACTCGTTTTCTATTTTTCATGATTTT
191 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
** ** *
18427705 TGAAACTTTTTCCGGTTCAAGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGCCACAAACTTG
256 TGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTG
* * * *
18427769 GTAGACATGATCCTTGTGTTTTTGTTGGCATGCACAAAACAA-TTCAGCTAAAAACTCAAAGTGT
320 GTAGACGTGATCCTTGTATCTTTGTTGGCATGCACAAAAAAATTTC-GCTAAAAACTCAAAGTGT
*
18427833 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGC
384 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * *
18427898 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGATCTGGAGGTTTGATGAGGGATAAG
449 AAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AG
* * *
18427963 GGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGCGCGCACATCCCCCCGG-CCC
513 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
** * * * * * *
18428027 CCCGATCGCCAAAACCCTAATGCCACCGGTTAGGTTCTCCGACGATGCTCTGACGATGGTGTCTC
578 CCCGATCGCCGGAACCCCAATG-C-CCGGTCA----AT---AAGATTCTCTGACGATGGTG-CCC
* * * *
18428092 GGTGAAGAAAAATGCAGCACCAGCACATGCTCAAGCCCAGCATGTG-CTGTCGTAA-CC-C-T-C
633 GGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCCTG-C--AACCCTCGTCC
* * * * * *
18428152 GG----T-CTGGTCCG-ATCTTAGACTGGGAATAAACTCCATATCCCTATGTCAACCCCCGAAAC
695 GGATCTTGCTGGTCCGTAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * *
18428211 GAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCAACCAGGTCCCC
760 GAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCC
* * * * * *
18428276 CTCTGTGTGCTGCTGATCTTGCTGTTGCAACCCTCGGTCCGGCCCAAT
825 CTCTGCGTGCTGCCGATCCTGCTG-CGCAACCCTCGGTCCGGTCTAAT
* * *
18428324 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAGCCGACGAAACGAACGGGCAGACGGGCGGG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAA-----AG-CGGGCGGG
* * * * * *
18428389 TGGGTGGGCACTATGCCGACCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAAGGTGGTAGGT
60 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG-CGTGGATCGATAGGGTGGTAGGT
* *
18428454 GGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA-TTTTATGGCTTGTAAATTGATATA
124 GGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
18428518 GTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATT
189 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * *
18428583 TTTGAAACTTTTTTTTGGTTCGGGATTCTTTAAAATTTTTTCGAAAGGAGTTTTGGCTCCAAACT
254 TTTGAAAC-TTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
* * * * * * *
18428648 TGGTAGACATGATCCTAGTATTTTTGTTGCCGTGCA-AAAAAAAATTCAGCTAAAAACTCGAAGT
318 TGGTAGACGTGATCCTTGTATCTTTGTTGGCATGCACAAAAAAATTTC-GCTAAAAACTCAAAGT
*
18428712 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCA
382 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
18428777 GCAAACCTGTAAAATCTCAAATGCACTTTAAAGGA-GTGTGAGTTCTCAAGGTTTGATGATGGAT
447 GCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
18428841 AGGGGGCCAATATAAGGGCCAAGCACCAGCACCCGTCGCACATCATGTGCGCACA-CCCCCCGGC
511 A-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
* * * * * * *
18428905 CCTCCCGATCGCCGGAACCCCAAAGCCGCCGGTTAGATTCTTCGATGATGCTCCGACAATGGTGC
575 CCCCCCGATCGCCGGAACCCCAATG-C-CCGGTCA-A----T--AAGATTCTCTGACGATGGTGC
** * * *
18428970 CCTGGTTAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAACATGTG-CTGCCACAACCCTCG
631 CC-GGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCCTG---CAACCCTC-
* *
18429034 GTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGC
691 GTC-CG---GATCTT-G-CT--G---G---TCCGTA-GCTTAGACTGGGAATGAACTCCGTATGC
* * *
18429099 CTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGTAAGCC
741 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCC
* *** * * **
18429164 GGGGATCGACCGGGTCCCCCTCTGTGTGCTATTGATCCTTCTGCTGCAACCGTTAGTCCGGTCTA
806 GGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGC-GCAACCCTCGGTCCGGTCTA
18429229 AT
870 AT
*
18429231 CTTAGACTGGGAATGAAC-TCTGTATGCCTAAGCCAACCGAAGAAACGGCAAAGCGGGC-GGCGG
1 CTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCAACCGACGAAAC-G-AAAGCGGGCGGGCGG
* * *
18429294 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGCTAGGGTGGTAGGTGGG
63 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG-CGTGGATCGATAGGGTGGTAGGTGGG
* ** * *
18429359 TTTAGGCACATCTTCCTATTTCTGCATGCCAATGCCATTTTTATGGATTGTGAATTCATACAATG
127 TTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
18429424 GTCCCTTAAACCTTCACGTGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
192 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
18429489 AAAACTTTTTGCGGTTCAGAATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
257 GAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
18429554 AGACGTGATCCTTGTATCTTTGTTGGCATGCACAAAAAAATTTCGCTAAAAACTCAAAGTGTACA
322 AGACGTGATCCTTGTATCTTTGTTGGCATGCACAAAAAAATTTCGCTAAAAACTCAAAGTGTACA
*
18429619 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAT
387 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
18429684 CCTGTAAAATCTCAAATGCTCTGTAAGGAGGTGTGAGTTCTCGAGGTTTGATGGGGGATAGGGAC
452 CCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGC
18429749 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
517 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* *
18429814 ATCGTCGGAACCCCAATG-CC-GTCAATAAGGTTCTCTGACGATGGTGCCACGGCGAAGAAAAAT
582 ATCGCCGGAACCCCAATGCCCGGTCAATAAGATTCTCTGACGATGGTGCC-CGGCGAAGAAAAAT
* * *
18429877 GCGGCACCAGCAAAAGCTCGAGCCCAGCATGTGCCACTGCAACCCTCAGTCCGATTTGATCTTGG
646 GCGGCACCAGCACATGCCCGAGCCCAGCATGTG-C-CTGCAACCCTC-GTCCG----GATCTT-G
*
18429942 ACTAGGAATGAACTCTGTAAGCTTAGACTGGGAATGAACTCCGTGTGCCTAAGTCAACCCACGAA
703 -CT-GG--T---C-C-GT-AGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * **
18430007 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCGAGTCGGGGATCGGTCGGGTCC
758 ACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCC
* * * * *
18430072 CCCTCTACGTGCTGCCGATCCTACTGTCACAACCCTCGGTCTGGTCTGAT
823 CCCTCTGCGTGCTGCCGATCCTGCTG-CGCAACCCTCGGTCCGGTCTAAT
* * * *
18430122 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACAGACGAAACGAACGTGCGGGTGGGCAGG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAA--AGCGGGCGGGCGGG
* *
18430187 CGGGCACTACGCCGGCAAGAGAGACGGGATGCGCAAGTCGAGGATCGATAGGGTGGTAGGTGGGT
64 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG-CGTGGATCGATAGGGTGGTAGGTGGGT
* *
18430252 TTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTCTTATGGCTTGTAAATTCATACAATGG
128 TTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
18430317 TCCTTTAAGCCTTCACGTGTAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
193 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
18430382 AAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGCCCCAAGCTTGGT
258 AAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGT
18430446 AGACGTGATCCTTGTATCTTTGTTGGCATGCACAAAAAAATTTCGCTAAAAACTCAAAGTGTACA
322 AGACGTGATCCTTGTATCTTTGTTGGCATGCACAAAAAAATTTCGCTAAAAACTCAAAGTGTACA
*
18430511 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAT
387 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
18430576 CCTGTAAAATCTCAAATGCTCTGTAAGGAGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGC
452 CCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGC
* * *
18430641 CAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCTCCCG
517 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
** ** * *
18430706 ATCGCCGGAACCTTAATGCTACCGGTCAAGT--TCTTCGGTGATGATCCGGTGATGGTGCCCCGA
582 ATCGCCGGAACCCCAATGC--CCGGTCAA-TAAGATTC--T-CTGA--C---GATGGTG-CCCGG
* * * *
18430769 CAAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTG-CTGCCACAACC-C-T-CGG-
635 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCCTG-CA-ACCCTCGTCCGGA
* *
18430829 TC---C-GGTCCG--GTCTTAGACTGTGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGA
698 TCTTGCTGGTCCGTAG-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * ** ** * *
18430888 GCGTGCGGGTGCTCAACCAGCCAGAGGGGCGAAATGCGCAAGCCAAGGATCGACCGGGTACCACT
762 GCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCT
* * * *
18430953 CTGCGTGCTGGCAATCCTGCTGCTGCAACCCTCGGTCTGGTCTGAT
827 CTGCGTGCTGCCGATCCTGCTGC-GCAACCCTCGGTCCGGTCTAAT
* * * * *
18430999 ATTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACTGATGAAACG--AGC-GGC---CGAGCG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAAAGCGGGCGGGCGGGCG
* * * * * *
18431058 GGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCGGTAGATCAATGGGGTGGTAAGTGGG-TT
66 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC-GTGGATCGATAGGGTGGTAGGTGGGTTT
* *
18431122 ATGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTC
130 AGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * * * * *
18431187 CCTTAAGCCTTCATGAGATGTTTCATGGCAAGACAACTCATTTTCTATTTTTCATGATTTTCGAA
195 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *
18431252 ACTTTTTGTGGTTCGTGATTTTTTAAAATTTTTTTGAAAGGATTTTTGGCCCCAAACTTGATAGA
260 ACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGA
18431317 CGTGAT-C------C-----T----TG--C------ATTT-G----------AAA-TGTACAAGA
325 CGTGATCCTTGTATCTTTGTTGGCATGCACAAAAAAATTTCGCTAAAAACTCAAAGTGTACAAGA
* *
18431346 TTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCT
390 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * *
18431411 ATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGTTTTGATGAGGGATAGGGGGCCA
455 GTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCA
*
18431476 ATATAAGGGCCAGGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGAT
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGAT
** * * * * * *
18431541 CATCAGAACCCGAATGTCACCGGTCAGGTTCTCCGACA-ATGCTCCGACGATGGTGCCCTGACGA
584 CGCCGGAACCCCAATG-C-CCGGTCA----AT---A-AGATTCTCTGACGATGGTGCCC-GGCGA
** * * * * *** ** *
18431605 AGAAAAATATGACA-CAGCATATACCCGAGCCCAGCATGTG-CTG---CCGTAAACCTCA-GTT-
638 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCCTGCAACCCTCGTCCGGATCTTG
* * *
18431663 C-GGTCCG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTAC
703 CTGGTCCGTAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * *
18431726 GGGCGCTCAGCCAGCCAGAGGGGCGAGATGCGCATGCCGGGGATTGGCTGGGTACCCCTCTGCGT
768 GGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGT
* * ** *
18431791 GCTACCGATCCTGCTGCCGCAACCCTCGATCCAATCCAAT
833 GCTGCCGATCCTGCTG-CGCAACCCTCGGTCCGGTCTAAT
* * *
18431831 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACG--AGCGGGCGGGCGGGCG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAAAGCGGGCGGGCGGGCG
* * *
18431894 GTCACTACGCCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG-CGTGGATCGATAGGGTGGTAGGTGGGTTT
*
18431959 AGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAA
130 AGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAA
18432010 ATCGCACATC
Statistics
Matches: 3199, Mismatches: 367, Indels: 280
0.83 0.10 0.07
Matches are distributed among these distances:
827 1 0.00
830 1 0.00
832 341 0.11
833 118 0.04
834 1 0.00
836 58 0.02
837 51 0.02
838 2 0.00
839 1 0.00
841 2 0.00
843 1 0.00
844 4 0.00
850 1 0.00
852 2 0.00
856 1 0.00
861 1 0.00
867 1 0.00
868 183 0.06
869 57 0.02
872 2 0.00
873 2 0.00
874 1 0.00
876 2 0.00
877 222 0.07
879 2 0.00
880 107 0.03
881 453 0.14
882 9 0.00
883 2 0.00
884 1 0.00
885 1 0.00
886 4 0.00
887 2 0.00
888 1 0.00
889 3 0.00
890 5 0.00
891 263 0.08
892 512 0.16
893 3 0.00
894 5 0.00
895 5 0.00
896 5 0.00
897 5 0.00
898 8 0.00
899 4 0.00
900 4 0.00
901 58 0.02
902 343 0.11
903 149 0.05
904 4 0.00
905 4 0.00
906 2 0.00
907 176 0.06
908 1 0.00
909 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (871 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAAAGCGGGCGGGCGGGCG
GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
CTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATCTTTGTTGGCATGCACAAAAAAATTTCGCTAAAAACTCAAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG
CCGGAACCCCAATGCCCGGTCAATAAGATTCTCTGACGATGGTGCCCGGCGAAGAAAAATGCGGC
ACCAGCACATGCCCGAGCCCAGCATGTGCCTGCAACCCTCGTCCGGATCTTGCTGGTCCGTAGCT
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCA
GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
CTGCGCAACCCTCGGTCCGGTCTAAT
Found at i:18433692 original size:874 final size:868
Alignment explanation
Indices: 18432010--18433976 Score: 2705
Period size: 874 Copynumber: 2.3 Consensus size: 868
18432000 GGCTTGTAAA
* * * * * * * * * **
18432010 ATCGCACATCATGTGTGCACACCCCCCCGACCCCCTCGATTGCCAGAACCCTAATGTCGCCATTC
1 ATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCAATCGACGGAACCCAAATGCCGTCGGTC
* * ** * *
18432075 AGGTTCTCTGGCGATGCTCCGTTGATGGTGCTCCAGTGAAGAAAAATGTAGCT-CCAGCACATGC
66 AGGTTCTCCGACGATGCTCCGACGATGGTGC-CCGGTGAAGAAAAATG-AGATACCAGCACATGC
* *
18432139 CTGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
129 CCGAGCCTAGCATGTGCTGCCGCAACCCTCGGT-CGATCCGATCTTAGACTGGGAATGAACTCCG
* * * * **
18432204 TATGCCTAAGTCAACCCACAAAACGAACGTGCGGGCGCTTAGTCGGCTAGAAGGGCGGGATGCGT
193 TATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGTCGGCCAGAAGGGAGGGATGCAC
* * * * *
18432269 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCAGTTGG
258 AAACCGGGGATCGGCCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCAGTTCG
* * * *
18432334 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGC
323 GTCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAAACGACGAAACCAGCGGGCGGGC
*
18432399 GGGCACTACGCCGACCAAAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTTAGTGGGTT
388 GGGCACTACGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTAGTGGGTT
* *
18432464 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTACGGCTTTTAAATTCATACAATGGT
453 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATGGT
* * *
18432529 CCCTTATGCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
518 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * *
18432594 AACATTTTATGGTTCGAGATTTTGTAAAATTTTTTTGGAAGGAGTTTCGGATCCAAACTTGGTAG
583 AACATTTTATGGTTCGAGATTTTGTAAAATATTTTCGGAAGGAGTTTCAGACCCAAACTTGGTAG
18432659 ACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGGGTACAAG
648 ACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGGGTACAAG
* *
18432724 ATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTTATAGCTACTGGTAGCAAACA
713 ATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACA
* *
18432789 TGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATGGGGGGCC
778 TGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGAC
*
18432854 CATATAAGGGCCAAGTACCAGCACCC
843 AATATAAGGGCCAAGTACCAGCACCC
* * * * *
18432880 ATCGCACATCATGTGCGCGCACCCCCTTCG-CCCCCCCGATCGACGGAACCCCAATGCGGTCGGT
1 ATCGCACATCATGTGCGCACACCCCC-CCGACCCCCCCAATCGACGGAACCCAAATGCCGTCGGT
* * *
18432944 CAGGTTCTCCGACAATGCTCCGGCGATGGTGTCCCGGTGAAGAAAAATGCGATACCAGCACATGC
65 CAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCGGTGAAGAAAAATGAGATACCAGCACATGC
* * *
18433009 CCAAGCCTAGCATGTGCTGCCTCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCT
129 CCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTC-GATCCGATCTTAGACTGGGAATGAACTCCG
* * *
18433074 TATGCCTCAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGAGGGATGCAC
193 TATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGTCGGCCAGAAGGGAGGGATGCAC
* * * ** **
18433139 AAATCGGGTATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGTCACAACCCTTGGTTCG
258 AAACCGGGGATCGGCCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCAGTTCG
18433204 GTCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAAACGACGAAACCAGCGGGCGGAT
323 GTCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAAACGACGAAACCAGCGGGCGG--
* *
18433269 G-GGCAAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG-TAG-
386 GCGG---GCACTACGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTAGT
* * *
18433331 GCGCGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
448 G-G-GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTACGGCTTGTAAATTCATA
* * * *
18433396 CAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAATACGATTCGTTTTTTATTTTTCACGA
511 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
*
18433461 TTTTTGAAAC-TTTT-TGCTGTTCGAGATTTT-TGAAAATATTTTCGGAAGGAGTTTTAG-CCCG
576 TTTTTGAAACATTTTATG--GTTCGAGATTTTGT-AAAATATTTTCGGAAGGAGTTTCAGACCC-
* *
18433522 AAACTCT-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
637 AAACT-TGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAACTAAAAACTC
* * * *
18433586 GAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
701 GAAGGGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTAC
* * *
18433651 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
766 TGGCAGCAAACATGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAG
* *
18433716 GGATAGGGGGACAATATAAGTGCCAAGTACCAGCATCC
831 GGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCC
* * *
18433754 ATCGCACATGATGTGCGCACACCCCCCCGACCCCCCCAATCGTCGGAACCTAAATGCCGTCGGTC
1 ATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCAATCGACGGAACCCAAATGCCGTCGGTC
* ** * * **
18433819 AAGTTCTCC-AGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAATTGTGGCACCAGCACATGC
66 AGGTTCTCCGA-CGATGCTCCGACGATGGTG-CCCGGTGAAGAAAAATGAGATACCAGCACATGC
* * *
18433883 CCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCAAGTCCGATCTTAGACTGGGAATGAACTCCG
129 CCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCGA-TCCGATCTTAGACTGGGAATGAACTCCG
* * *
18433948 TACGCCTAAGCCAACCGACGAAACGAACG
193 TATGCCTAAGTCAACCCACGAAACGAACG
18433977 AGAGGGCGGG
Statistics
Matches: 962, Mismatches: 116, Indels: 34
0.87 0.10 0.03
Matches are distributed among these distances:
869 3 0.00
870 326 0.34
871 5 0.01
872 4 0.00
873 15 0.02
874 608 0.63
875 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (868 bp):
ATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCAATCGACGGAACCCAAATGCCGTCGGTC
AGGTTCTCCGACGATGCTCCGACGATGGTGCCCGGTGAAGAAAAATGAGATACCAGCACATGCCC
GAGCCTAGCATGTGCTGCCGCAACCCTCGGTCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGTCGGCCAGAAGGGAGGGATGCACAAA
CCGGGGATCGGCCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCAGTTCGGTC
CGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAAACGACGAAACCAGCGGGCGGGCGGG
CACTACGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTAGTGGGTTTAG
GCACATCTTCATATTTCTACATGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
ATTTTATGGTTCGAGATTTTGTAAAATATTTTCGGAAGGAGTTTCAGACCCAAACTTGGTAGACG
TGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGGGTACAAGATT
TTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACATGT
AAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGACAAT
ATAAGGGCCAAGTACCAGCACCC
Found at i:18434735 original size:712 final size:707
Alignment explanation
Indices: 18433204--18434647 Score: 1988
Period size: 712 Copynumber: 2.0 Consensus size: 707
18433194 CCTTGGTTCG
* * * * * *
18433204 GTCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAAACGACGAAACCAGCG---G-GC
1 GTCCGATCTTAGACTGGGAATGAACTCCGTACGACTAAGCCAACCGAAGAAACCAACGAAAGAGC
** * * *
18433265 GGATGGGCAAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
66 GGGCGGGC-AGCACTACACCGACCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTA
*
18433330 GGCGCGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
130 GGCGCGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * * *
18433395 ACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAATACGATTCGTTTTTTATTTTTCACG
195 ACAATGGTCCCTTAAGCCTACACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * *
18433460 ATTTTTGAAACTTTTTGCTGTTCGAGATTTTTGAAAATATTTTCGGAAGGAGTTTTAGCCCGAAA
260 A----T-AAACTTTTTACGGTTCGAGATTTTTGAAAATATTTTCGGAAGGAGTTTTAGCCCAAAA
*
18433525 CTCTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
320 CTCTGTAGACGTGATCCTTGTATTTTTGTTGGCATACACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
18433590 TGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
385 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTAGC
* * *
18433655 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
450 AGCAAACCGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGATGAGAGAT
* * *
18433720 AGGGGGACAATATAAGTGCCAAGTACCAGCATCCATCGCACATGATGTGCGCACACCCCCCCGAC
515 AGGGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAC
* *
18433785 CCCCCCAATCGTCGGAACCTAAATGCCGTCGGTCAAGTTCTCCAGCGATGCTCCGACGATGGTGC
580 CCCCCCAATCGTCAGAACCCAAATGCCGTCGG---AG---TCCAGCGATGCTCCGACGATGGTGC
* *
18433850 CCCGACGAAGAAAATTGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAG
639 CCCGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAG
18433915 TCAA
704 TCAA
* * * * *
18433919 GTCCGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAACGAACGAGAGGGC
1 GTCCGATCTTAGACTGGGAATGAACTCCGTACGACTAAGCCAACCGAAGAAACCAACGAAAGAGC
* * * *
18433984 GGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGATGTGGATCGATAGGGTGGTA
66 GGGCGGGCA-GCACTACACCGACCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTA
* * * *
18434049 GGTGGGTTTAGGCACTTCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
130 GGCGCGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
18434114 ACAGTGGTCCCTTAAGCCTACACGTGATGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC-
195 ACAATGGTCCCTTAAGCCTACACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * * * * *
18434178 A-AAACTTTTTACGGTTTGGGATTTTTTAAACTTTTTTCGGATGGAGTTTTGGCCCAAAACT-TG
260 ATAAACTTTTTACGGTTCGAGATTTTTGAAAATATTTTCGGAAGGAGTTTTAGCCCAAAACTCT-
*
18434241 GTAGACGTGATCCTTGTATTTTTGTTGGCATACACAAAAAGAA-TCAGCTAAAAACTTGAAGTGT
324 GTAGACGTGATCCTTGTATTTTTGTTGGCATACACAAAAA-AATTCAGCTAAAAACTCGAAGTGT
* *
18434305 ACATGATTTTGTGCCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTAGCAGC
388 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTAGCAGC
18434370 AAACCGGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGCTTGATGAGAGATAGG
453 AAACCGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGATGAGAGATAGG
* *
18434434 GGG-CTAATATAAGGGCCAAGTACCAGCACCCATCGGACATCATGTGCGCACA-CCCCCCGGCCC
518 GGGAC-AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCC
* * * *
18434497 CCCCGATCGTCAGAACCCCAATGCCGTC-G-G-CCA-TG-TTCTCCGACGATGGTGCCCC-ACAA
582 CCCCAATCGTCAGAACCCAAATGCCGTCGGAGTCCAGCGATGCTCCGACGATGGTGCCCCGACAA
* *
18434556 AGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGCAACCCTCAGTCTAA
647 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTC-AA
**
18434618 -TCCGATCTTAGTTTGGGAATGAACTCCGTA
1 GTCCGATCTTAGACTGGGAATGAACTCCGTA
18434648 TGCTTAGACT
Statistics
Matches: 661, Mismatches: 59, Indels: 35
0.88 0.08 0.05
Matches are distributed among these distances:
698 87 0.13
699 21 0.03
700 1 0.00
701 3 0.00
705 1 0.00
709 1 0.00
710 35 0.05
711 80 0.12
712 197 0.30
713 2 0.00
715 53 0.08
718 3 0.00
719 177 0.27
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (707 bp):
GTCCGATCTTAGACTGGGAATGAACTCCGTACGACTAAGCCAACCGAAGAAACCAACGAAAGAGC
GGGCGGGCAGCACTACACCGACCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAG
GCGCGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTACACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
TAAACTTTTTACGGTTCGAGATTTTTGAAAATATTTTCGGAAGGAGTTTTAGCCCAAAACTCTGT
AGACGTGATCCTTGTATTTTTGTTGGCATACACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTAGCAGCAAA
CCGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGATGAGAGATAGGGGG
ACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCC
AATCGTCAGAACCCAAATGCCGTCGGAGTCCAGCGATGCTCCGACGATGGTGCCCCGACAAAGAA
AAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCAA
Found at i:18438101 original size:26 final size:26
Alignment explanation
Indices: 18438072--18438124 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18438062 CTGGTCTGAT
*
18438072 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18438098 CTTAGACTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18438124 C
1 C
18438125 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18438529 original size:906 final size:897
Alignment explanation
Indices: 18436296--18439065 Score: 3814
Period size: 906 Copynumber: 3.1 Consensus size: 897
18436286 CCGGTCCGAT
*
18436296 CTTAGACTGGGAATGAAC-CTCGTATGCCTAAGTTAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTC-CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * ** * *
18436360 CTGGCCAGAGGGGCGGGATGCATAGGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGTCGATC
65 CCGGCCAGAAGGG-GGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCT-CCGATC
* * ** *
18436425 CTGCTGCTACAACCATTGGTCTGGTCCGTTCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
128 CTGCTGCTACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** *
18436490 ATAGAAGAAACGAGCAAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
193 ACCGACGAAACGAGC--ACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * * *
18436555 CGCAAGCCATGGATCGCTAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAA
256 TGCAAGCCAT-GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAA
18436620 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
320 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * *
18436685 AAGATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTTGGGATTTTTTAAACT
385 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAAT
* * *
18436750 TTTTTCGCAAGGAGTTTTGGCCCCAAACTTTTTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
450 TTTTTCGGAAGGAGTTTT-G--TC--ACTTATTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
18436815 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
510 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCA
**
18436880 ATTTCAGACACTTTAAGGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
575 ATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
18436945 GTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCG
640 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
18437010 CACATCATGTGCGCACACCCCCCCGGCCCCCTCGATCGTCAGAACCCAAATGCCG-CTGGTCAGG
705 CACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCGTCAGAACCCAAATGCCGTC-GGTCAGG
* * *
18437074 TTCTCCGACGATGCTCCGGCGATGGTGCCACGACGAAGAAAAATGCGGCACCAGCACATGCCCAA
768 TTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGA
* ** * * **
18437139 GCCCAGCATGTGCTGCCACAACCCTCGGTCCAGTCCGATATTA-ACTGGGAATGAACTCCATATG
833 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
* * * * * * * *
18437203 CTTAGACTAGGATTGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGCCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * *
18437268 CGACCAG-AGGGGCGAGATAAGCAAGCTGGGGATCGATCGGGTCCCACTCTATGTGCTCCTGATC
66 CGGCCAGAAGGGG-G-GATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTCC-GATC
* * * * *
18437332 CTGCTACTGCAATCCTCAGTCTGGTCCAATCTTAGACTGGGATTGAACTCCGTATGCCTAAGCCA
128 CTGCTGCTACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * *
18437397 ACCGACGAAACGA-C-CTTGCGGGCGGGCGGGCAGGCACTATGTCGGCCAGAGAGACGGGATGTG
193 ACCGACGAAACGAGCACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTG
** * * *
18437460 CAAGCTGTGTATCGATAGGGTTGTAGCTGGGTTTAGGAACATCTTCATATTTTTGCGTGCCAATG
258 CAAGCCATG-ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATG
*
18437525 CCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
322 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
18437590 GACGACTCGTTTTCTATTTTTTAAGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAAATT
387 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTT
** * *
18437655 TTTCGGAAGGAGTTTTGTC-CTTGGTAGATGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAA
452 TTTCGGAAGGAGTTTTGTCACTTATTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
18437719 ATTGAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTTAG
517 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAG
* *
18437784 ATACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
582 ACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
18437849 CTCGAGGTTTGATGAGGGACA-GGGGCCAATATAAGGGCCAAGTACCAGCACGCATGGCAAATCA
647 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * ** *
18437913 TGTGTGCACA-CCCCCC-GACCCCCGAATCGTCAAAACCTTAATGCCGTCGGTCAGGTTCTCCGG
712 TGTGCGCACACCCCCCCGGCCCCCCG-ATCGTCAGAACCCAAATGCCGTCGGTCAGGTTCTCCGA
* * ** * * * *
18437976 TGAAGCTCCGATGATGGTTCCCCGGCGAAGAAAAATGAGGCACCAGCACAAGCCCGAGCCCAGTA
776 CGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
*
18438041 TGTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
841 TGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
* * *
18438098 CTTAGACTGGGAATGACCTCCGTATGCCTAAGTCAACCCATGAAACGACCGCGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* *
18438163 CGGCCAGAAGGGGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCAATCCT
66 CGGCCAGAAGGGGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCT-CCGATCCT
* * * * * **
18438228 ACTGCCACAACCCTCGGTCCGATCTAATCTTAGACTGGGAATGAACTCTTTATGCCTAAGCCAAC
130 GCTGCTACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* *
18438293 CGACGAAACAAGCAGGTGGGCGAGCGGGCGAGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGAC
195 CGACGAAAC--G-A-----GC-A-CGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC
* *
18438358 GGGATGTGCAAGCCATCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACG
250 GGGATGTGCAAGCCAT-GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCG
18438423 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
314 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
18438488 CATGGCTAGACGACTCGTTCTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTT
379 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTT
* * * *
18438553 TAAAATTTTTTCGGAAGGTGTTTTGTCCCCAAACTTATTAGACATGATCATTGTAATTTTGTTGG
444 TAAAATTTTTTCGGAAGGAGTTTTGT---C--ACTTATTAGACGTGATCCTTGTATTTTTGTTGG
* *
18438618 CATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTTGTGACCATTTGAAAAAAG
504 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAG
* *
18438683 TGTCCCTATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTA
568 TGTCCCAATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
18438748 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
633 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
18438813 CCCATCGCACATCATGTGCACACACCCCTCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC
698 CCCATCGCACATCATGTGCGCACACCCC-CCCGG-CCCCCCGATCGTCAGAACCCAAATGCCGTC
* * *
18438878 GGTCAGGTTCTCCAACGATGCTTCGGCGATGGTGCCCCGGGGAAGAAAAATGCGGCACCAGCACA
761 GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACA
* *
18438943 TGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTAAGACTGGGAATGAACT
826 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
18439008 CTGTATG
891 CTGTATG
* ** * ** *
18439015 CTTAGATTGGGAATGAACTATGTATGCCTAAGCCAACTGACGAAACGAGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
18439066 AACGGATGGG
Statistics
Matches: 1621, Mismatches: 207, Indels: 60
0.86 0.11 0.03
Matches are distributed among these distances:
893 2 0.00
894 222 0.14
895 89 0.05
896 54 0.03
897 185 0.11
900 1 0.00
902 2 0.00
903 235 0.14
905 1 0.00
906 243 0.15
907 162 0.10
908 1 0.00
909 1 0.00
912 64 0.04
913 115 0.07
914 48 0.03
915 3 0.00
916 3 0.00
917 184 0.11
918 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAAGGGGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTCCGATCCTG
CTGCTACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAA
GCCATGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTC
GGAAGGAGTTTTGTCACTTATTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACAC
TTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCCGGCCCCCCGATCGTCAGAACCCAAATGCCGTCGGTCAGGTTCTCCGACGATG
CTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
Found at i:18439297 original size:26 final size:26
Alignment explanation
Indices: 18439262--18439311 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
18439252 TTTTCTATTT
* *
18439262 TTCATGATTTTTGAAACTTTTTTCGG
1 TTCAAGATTTTTGAAAATTTTTTCGG
*
18439288 TTCAAGATTTTTTAAAATTTTTTC
1 TTCAAGATTTTTGAAAATTTTTTC
18439312 AGAAGGAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.10, G:0.10, T:0.56
Consensus pattern (26 bp):
TTCAAGATTTTTGAAAATTTTTTCGG
Found at i:18440643 original size:26 final size:26
Alignment explanation
Indices: 18440607--18440658 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
18440597 TGGTTCGATT
18440607 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18440633 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18440659 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:18441894 original size:902 final size:899
Alignment explanation
Indices: 18439010--18442858 Score: 4640
Period size: 902 Copynumber: 4.3 Consensus size: 899
18439000 AATGAACTCT
* *** * *
18439010 GTATGCTTAGATTGGGAATGAACTATGTATGCCTAAGCCAA-CTGACGAAACGAGCGAACGGATG
1 GTAT-CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAATC-GAAGAAACGAGC-AA-GCA--
* ** *
18439074 GGCGGGCGGGCAGTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATTGATAGGGTGGTAG
60 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAG
* * *
18439139 GTGGGTTTAGGCACATCTTCAAATTTCTGCATGCCAATGCCATTTTTATGACTTGTAAATTCATA
125 GTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * * *
18439204 CAATGGTCCCTTAAGCCATCATGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCATGA
190 CAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * * *
18439269 TTTTTGAAACTTTTTTCGGTTCAAGATTTTTTAAAA-TTTTTTCAGAAGGAGTTTTGGCCACAAA
255 TTTTTAAAACTTTTTACGGTTCAGGATTTTTAAAAATTTTTTTCGGAAGGAGTTTTGGCC-CAAA
* * * *
18439333 CTTGGTAGACATGATCCTTGTGTTTTTGTTGGCATGCACAAAACAATTCAGCTAAAATCTCAAAG
319 CTTGGTAGACATGATCCTTGT-ATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * * *
18439398 TGTACAAGATTGTGTGACCATTTGAAAAAAGCGTCCCCATTTCAAACACTTTAATGGCTACTGGT
383 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
** * * *
18439463 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCAGTGAGATCTGGAGGTTTGATGAGGGAT
448 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGAT
* * * * *
18439528 AAGGGGCCAATATAAGGGCTAAGTACCAGCACCAATCGCACATCATGCGCGCACACCCCCCCCGG
513 -AGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCACACATCATGTGCGCACA--CCCCCCGG
** * * ** * * * **
18439593 CCC-CCCGATCACCAGAACCCTAATGC--CACCGGTCAGGTTCTCCGACGATGCTCTGGTGATGG
575 CCCACCCGATCGTCGGAACCCCAATGCGTCGTCGGTTAGGTTCTTCGACGATGCTCCGACGATGG
* * ** * * * * * **
18439655 TGTCTCGGTGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGTAA-CC-
640 TGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATATGCTGCCACAACCCT
18439718 C--T-CG----G----T---CT-GG--T----T-CG-AT-CTTAGACTGGGAATGAACTCCATAT
705 CGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATAT
* * * * *
18439759 GCCTATGTCAACCCCCGAAACGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAG
770 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAG
* * * * * * *
18439824 CCGGGGATCAACCGGGTCCCCCTCTATGTGCTGCTGATCTTACTGTTGCAACCCTCGGTCTGGCC
835 CCGGGGATCGACCAGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCTACAACCCTCGGTCTGGCC
* * * * **
18439889 CTATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAGTCGACGAAACGAACGGGCAGGCGGG
1 GTATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAATCGAAGAAACGAGCAAGCAGGCGGG
* * *
18439954 CGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
* * * *
18440019 TTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA-TTTTATGGCTTGCAAATTGATACAGTGG
131 TTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
18440083 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTAACGATTTTTG
196 TCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
** * * *
18440148 AAACTTTTTTTTGGTTCGGGATTTTTAAAAA-TTTCTTCGGAAGGAGTTTTGGCTCCAAACTTAG
261 AAAC-TTTTTACGGTTCAGGATTTTTAAAAATTTTTTTCGGAAGGAGTTTTGGC-CCAAACTTGG
* * * * *
18440212 TAGACACGATCCTAGTATTTTTGTTGCCGTGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTAC
324 TAGACATGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
18440277 AAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTATTGGCAGCAA
388 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
18440342 ACCTGTAAAATCTCAAATGCACTTTAAAGGAGTGTGAGTTCT-GAAGGTTTGATGAGTGATAGGG
453 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG-AGGTTTGATGAGAGATAGGG
* * * *
18440406 GCCAATATAAGGGCCAAGCACCAGAACCCATCGCACATCATGTGCGCACTCCCCCCGGCCCTCCC
517 GCCAATATAAGGGCCAAGTACCAGAACCCATCACACATCATGTGCGCACACCCCCCGGCCCACCC
* * ** * *
18440471 GATCGCCGGAACCCCAAT--GTCGCCGGTTACATTCTTCGATGATGCTCCGACAATGGTGCCCCG
582 GATCGTCGGAACCCCAATGCGTCGTCGGTTAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCG
*** * * * * * *
18440534 GTTAAAAAAAATGCCGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCACAACCCTCGGTCTG
647 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATATGCTGCCACAACCCTCGGTCCG
* * *
18440599 GT-TCGATTTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
712 ATCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAA
* *
18440663 GTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAGCCAGA-GGGCGGGATGCGTAAGCCGGGG
776 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* *** * * * * * *
18440727 ATCGACCGGGTCCCCCTCTGTGTGCTATTGATCCTTCTGCCACAACCGTCAGTCCGGTC
841 ATCGACCAGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCTACAACCCTCGGTCTGGCC
* * *
18440786 -TAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGAAGAAACGAGCAAACGGGCGG
1 GT-ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAATCGAAGAAACGAGC-AA---GCAG
* * *
18440850 GCGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCATGGATCGCTAGGGTGGTAGG
61 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
* * *
18440915 TGGGTTTAGGCACATCTTCATATTT-TTTCATGCCAATGCCATTTTTATGGATTGTGAATTCATA
126 TGGGTTTAGGCACATCTTCATATTTCTGT-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
18440979 CAATGGTCCCTTAAACCTTCGCGTGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
190 CAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * *
18441044 TTTTCAAAACTTTTTGCGGTTCAGGATTTTTAAAAATTTTTTTCGGATGGAGTTTTGGCCACCAA
255 TTTTTAAAACTTTTTACGGTTCAGGATTTTTAAAAATTTTTTTCGGAAGGAGTTTTGGCC-CAAA
* * *
18441109 CTTGGTAGACATGATCCTTGTATTCTTGTAGGCACGCACAAAAAAATTCAGCTAAAAACTCAAAG
319 CTTGGTAGACATGATCCTTGTATT-TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
18441174 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
383 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
18441239 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGAT
448 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGAT
* * *
18441304 AGGGGGCAAATATAAGGGCCAAGTACCAGAACCCATCACACAT-ATGTGTGCACACCCCCCGGTA
513 A-GGGGCCAATATAAGGGCCAAGTACCAGAACCCATCACACATCATGTGCGCACACCCCCCGG-C
* * * * * *
18441368 CC-CCCAATCGTCAGAACCCCGATGGCGTCGGTCGGTTAGGTTCTCCGACGATGCTCTGGCGATG
576 CCACCCGATCGTCGGAACCCCAAT-GCGTC-GTCGGTTAGGTTCTTCGACGATGCTCCGACGATG
* * * * *
18441432 GTACCCCGACGAAGAAAAATACGGCACCAGCACATGGCCAAGCCCAGTATTTGCTGCCACAACCC
639 GTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATATGCTGCCACAACCC
* * * * * *
18441497 TCGGTCCGATCTGATCTTAGACTGCGAATGAACTCCATATGCTTAGATTGGGAATAAACCCCGTA
704 TCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATA
* ** * * *
18441562 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGAGGGGAGGGATGCACAG
769 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAA
*
18441627 GCCGGGGATCGACCAGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCTACAACTCTCGGTCTGGT
834 GCCGGGGATCGACCAGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCTACAACCCTCGGTCTGG-
*
18441692 TC
898 CC
* *
18441694 GT-TCTTAGACTGGGAATGAACTCCATATGCCAAAGCCAA-CAGGAGAAACGAGCAAGCAGGCGG
1 GTATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAATC-GAAGAAACGAGCAAGCAGGCGG
* * *
18441757 GCAGGCACTACGCCGGCCAAAGAGACTGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGG
65 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGG
* * * *
18441822 TTTAGGCACATCTTCACATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA-C
130 TTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
18441886 GACCCTTAACCCTTCACGTGAAGTTTCATAGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
195 GTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
18441951 TAAACTTTTTACGATTCTGTATTTTTTAAAATTTTTTT-GGAAGGAGTTTTGGCCTCGAAA-TTG
260 AAAACTTTTTACGGTTCAGGATTTTTAAAAATTTTTTTCGGAAGGAGTTTTGGCC-C-AAACTTG
* * * *
18442014 GTAGACGTGATCCTTGTACTTTTGTTGGCATGCATAAAAAAATGCAGCCAAAAACTCGAAGTGTA
323 GTAGACATGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
18442079 CAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGAAGCA
387 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
18442144 AACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGG
452 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATA-GG
* * * *
18442209 GGCCAATATAAGGGCCAAGTACCAGCACCCATTACACATCATGTGCACACACCCCCTGGCCCACC
516 GGCCAATATAAGGGCCAAGTACCAGAACCCATCACACATCATGTGCGCACACCCCCCGGCCCACC
* * *
18442274 CGATCGTCGGAACCCTAATGC--CGTCGGTCAGGTTCTTCGGCGATGCTCCGACGATGGTGCCCC
581 CGATCGTCGGAACCCCAATGCGTCGTCGGTTAGGTTCTTCGACGATGCTCCGACGATGGTGCCCC
* ** * *
18442337 GACGAAGAAAAATACGACACCAGCACATGTTCGAGCCCAGCATATGCTACCGCAACCCTCGGTCC
646 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATATGCTGCCACAACCCTCGGTCC
* *
18442402 -AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCATATGCCTA
711 GA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTA
* * *
18442466 ATTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGCCAGAGGGGCGGGATGGGCAAGCCGGG
775 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * *
18442531 GATCGGCCAGGTCCCCCTCTGCGTGCTGCCAATCCGACTG-TCGCAACCCT-GATCTGGTCC
840 GATCGACCAGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCT-ACAACCCTCGGTCTGG-CC
* * * * **
18442591 G-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACAAACGGGC-GGACGG
1 GTATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAATCGAAGAAACGAGCAAGCAGG-C--
* * ** *
18442654 GAGGACGGGCACTACGCCGGCCAGAGAGACGGGATACACAAGCTGTGGATCGATGGGGTGGTAGG
63 G-GG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
* *
18442719 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAT
126 TGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
18442784 AATGGTCCC-TAAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTATCATGA
191 AATGGTCCCTTAAA-CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
*
18442848 TTTTTGAAACT
255 TTTTTAAAACT
18442859 CGAAGTGTAC
Statistics
Matches: 2562, Mismatches: 336, Indels: 121
0.85 0.11 0.04
Matches are distributed among these distances:
871 11 0.00
872 95 0.04
873 138 0.05
874 314 0.12
875 1 0.00
876 3 0.00
877 1 0.00
878 42 0.02
879 4 0.00
881 1 0.00
885 1 0.00
888 2 0.00
889 2 0.00
891 1 0.00
895 1 0.00
896 5 0.00
897 173 0.07
898 313 0.12
899 2 0.00
900 4 0.00
901 479 0.19
902 506 0.20
903 162 0.06
904 2 0.00
905 3 0.00
906 182 0.07
907 111 0.04
908 2 0.00
909 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
GTATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAATCGAAGAAACGAGCAAGCAGGCGGG
CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
AAACTTTTTACGGTTCAGGATTTTTAAAAATTTTTTTCGGAAGGAGTTTTGGCCCAAACTTGGTA
GACATGATCCTTGTATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGCCA
ATATAAGGGCCAAGTACCAGAACCCATCACACATCATGTGCGCACACCCCCCGGCCCACCCGATC
GTCGGAACCCCAATGCGTCGTCGGTTAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGACGA
AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATATGCTGCCACAACCCTCGGTCCGATCT
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
CCAGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCTACAACCCTCGGTCTGGCC
Found at i:18442439 original size:26 final size:26
Alignment explanation
Indices: 18442410--18442462 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18442400 CCAGTCCGAT
*
18442410 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18442436 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18442462 C
1 C
18442463 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18443237 original size:26 final size:26
Alignment explanation
Indices: 18443199--18443251 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18443189 CTGGTCCAAT
18443199 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
18443225 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18443251 C
1 C
18443252 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18443600 original size:789 final size:789
Alignment explanation
Indices: 18442065--18443647 Score: 2438
Period size: 789 Copynumber: 2.0 Consensus size: 789
18442055 ATGCAGCCAA
*
18442065 AAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
1 AAACTCGAAGTGTACAACATTTTGTGACCATTGGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
18442130 GGCTACTAGAAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
66 GGCTACTAGAAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
* *
18442195 GATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTACACATCATGTGCACACA
131 GATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCACGTGCACACA
* * *
18442260 CCCCCTGGCCCACCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTTCGGCGATGCTCCGA
196 CCCCCCGGCCCACCCGATCGTCAGAACCCTAATGCCGTCGGTCAGGTTCTTCAGCGATGCTCCGA
** *
18442325 CGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGTTCGAGCCCAGCATATGCTACCGC
261 CGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAACATATGCTACCGC
* *
18442390 AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACT
326 AACCCTCGGTCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGATTGGGAATGAACT
* *
18442455 CCATATGCCTAATTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGCCAGAGGGGCGGGATG
391 CCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGCCAGAGGGGCGGGACG
* * * * * *
18442520 GGCAAGCCGGGGATCGGCCAGGTCCCCCTCTGCGTGCTGCCAATCCGACTGTCGCAACCCTGATC
456 CGCAAGCCGGGGATCGACCAGGTCCCACTCTGCGTGCTACCAATCCGACTATCGCAACCCTCATC
* * *
18442585 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACAAACGGGCGG
521 CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAACGGGCGG
* * *
18442650 ACGGGAGGACGGGCACTACGCCGGCCAGAGAGACGGGATACACAAGCTGTGGATCGATGGGGTGG
586 ACGGGAGGACGGGCACTACACCAGCCAGAGAGACGGGATACACAAGCTGTGGATCGATAGGGTGG
*
18442715 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
651 TAGGTGGGTTTAGGCACATCTTCATAATTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
*
18442780 ATATAATGGTCCCTAAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTATCA
716 ATATAATGGTCCCTAAAGACTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTATCA
* *
18442845 TGATTTTTG
781 CGATTTGTG
* *
18442854 AAACTCGAAGTGTACAATATTTTGTGACCATTGGAAAAAAGTGTCCCTATTTCAGACACTTTAAT
1 AAACTCGAAGTGTACAACATTTTGTGACCATTGGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * *
18442919 GGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
66 GGCTACTAGAAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
* *
18442984 GATGAGGGATATGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGCACACA
131 GATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCACGTGCACACA
18443049 CCCCCCGGCCC-CACCGATCG-CTAGAACCCTAATGCCG-CTGGTCAGGTTCTTCAGCGATGCTC
196 CCCCCCGGCCCAC-CCGATCGTC-AGAACCCTAATGCCGTC-GGTCAGGTTCTTCAGCGATGCTC
* * ** ** * * *
18443111 CGGCGATGGTGCCTCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAACATGTGCTGC
258 CGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAACATATGCTAC
* * **
18443176 TGTAACCCTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGATTGGGAATGA
323 CGCAACCCTCGGTCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGATTGGGAATGA
** * * *
18443241 ACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGG
388 ACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGCCAGAGGGGCGGG
* * * * * * *
18443306 ACGCGCAAGTCGGGGATCGATCAGGTCCCACTTTGCGTGCTACCGATCCTACTATTGTAACCCTC
453 ACGCGCAAGCCGGGGATCGACCAGGTCCCACTCTGCGTGCTACCAATCCGACTATCGCAACCCTC
* * *
18443371 AGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-G
518 A-TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAACGG
*
18443435 GCAGG-CGGGAGGACGGGCACTACACCAGCCAGAGAGACGGGATGCACAAGCTGTGGATCGATAG
582 GC-GGACGGGAGGACGGGCACTACACCAGCCAGAGAGACGGGATACACAAGCTGTGGATCGATAG
18443499 GGTGGTAGGTGGGTTTAGGCACATCTTCATAATTCTGCATGCCAATGCCATTTTTATGGCTTGTA
646 GGTGGTAGGTGGGTTTAGGCACATCTTCATAATTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* * * *
18443564 AATTCATATAATGGTCCCTTAAGACTTCATGTGAAGTTTCATGGCAGGATGACTCGTTTTCTATT
711 AATTCATATAATGGTCCCTAAAGACTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
*
18443629 TTTCACGATTTGTG
776 TATCACGATTTGTG
18443643 AAACT
1 AAACT
18443648 TTTTACGGTT
Statistics
Matches: 717, Mismatches: 72, Indels: 10
0.90 0.09 0.01
Matches are distributed among these distances:
788 3 0.00
789 657 0.92
790 57 0.08
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.24
Consensus pattern (789 bp):
AAACTCGAAGTGTACAACATTTTGTGACCATTGGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTAGAAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
GATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCACGTGCACACA
CCCCCCGGCCCACCCGATCGTCAGAACCCTAATGCCGTCGGTCAGGTTCTTCAGCGATGCTCCGA
CGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAACATATGCTACCGC
AACCCTCGGTCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGATTGGGAATGAACT
CCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGCCAGAGGGGCGGGACG
CGCAAGCCGGGGATCGACCAGGTCCCACTCTGCGTGCTACCAATCCGACTATCGCAACCCTCATC
CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAACGGGCGG
ACGGGAGGACGGGCACTACACCAGCCAGAGAGACGGGATACACAAGCTGTGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATAATTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
ATATAATGGTCCCTAAAGACTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTATCA
CGATTTGTG
Found at i:18445013 original size:26 final size:26
Alignment explanation
Indices: 18444977--18445029 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18444967 CTGGTCCGAT
18444977 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18445003 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18445029 C
1 C
18445030 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18446790 original size:26 final size:26
Alignment explanation
Indices: 18446754--18446804 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18446744 CCAGTCTGAT
18446754 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
18446780 CTTAGATTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
18446805 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:18447688 original size:25 final size:26
Alignment explanation
Indices: 18447652--18447703 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
18447642 TCGATCTGAT
*
18447652 CTTAGGTCGGGAATGAACTCCG-ATG
1 CTTAGGTCGGGAATAAACTCCGTATG
18447677 CTTAGG-CTGGGAATAAACTCCGTATG
1 CTTAGGTC-GGGAATAAACTCCGTATG
18447703 C
1 C
18447704 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 1 0.04
25 19 0.79
26 4 0.17
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (26 bp):
CTTAGGTCGGGAATAAACTCCGTATG
Found at i:18448058 original size:899 final size:901
Alignment explanation
Indices: 18442854--18449933 Score: 8402
Period size: 908 Copynumber: 8.0 Consensus size: 901
18442844 ATGATTTTTG
* * *
18442854 AAACTCGAAGTGTACAATATTTTGTGACCATTGGAAAAAAGTGTCCCTATTTCAGACACTTTAAT
1 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
18442919 GGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
66 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * * *
18442984 GATGAGGGATATGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGCACACA
131 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * *
18443049 CCCCCCGGCCCCACCGATCG-CTAGAACCCTAATGCCGCTGGTCAGGTTCTTC-AGCGATGCTCC
196 CCCCCCCGCCCCCCCGATCGTC-AGAACCCTAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCC
* * * * * * *
18443112 GGCGATGGTGCCTCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCT
259 GACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACC
* * * * * *
18443177 GTAACCCTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGATTGGGAATGAA
324 GCAACCCTCGTTC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * *
18443242 CTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGA
388 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGTGGGA
* * * * * * * * *
18443307 CGCGCAAGTCGGGGATCGATCAGGTCCCACTTTGCGTGCTACCGATCCTACTATTGTAACCCTCA
453 TGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACTGCAACCCTCG
* * * *
18443372 GTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-G
517 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGAG
* * * * * * *
18443436 CAGGCGGGAGGACGGGCACTACACCAGCCAGAGAGACGGGATGCACAAG-CTGTGGATCGATAGG
582 CGGGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGTC-GTGGATCGATAGG
* *
18443500 GTGGTAGGTGGGTTTAGGCACATCTTCATAATTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
646 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* * * * *
18443565 ATTCATATAATGGTCCCTTAAGACTTCATGTGAAGTTTCATGGCAGGATGACTCGTTTTCTATTT
711 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* ** * * * *
18443630 TTCACGATTTGTGAAACTTTTTACGGTTTGGGATTTTTTAAACTTTTTTTGGAAGGATTTTTAGC
776 TTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGC
* * * *
18443695 CCCAAAATTGGTAGACGTGATCCATGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAG
841 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
18443756 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCTATTTCAGATAGTTTAA
1 AAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAA
*
18443821 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTT
65 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * *
18443886 TGATGAGGGATATGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCAC
130 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * *
18443951 ACCCCCCCTGGCCCCACCGATCGTCAGAACCCCAATGCCGTCGGTCGGGTTCTCC-AGTGATGCT
195 ACCCCCCC--GCCCCCCCGATCGTCAGAACCCTAATGCCGCCGGTCAGGTTCTCCGA-CGATGCT
* * * * * * *
18444015 CTGGCGATGGTGCCCC-GTCGAAGAAAAATTCGACACCGGCACATGCCCGAGCCCAGCATGTTCT
257 CCGACGATGGTGCCCCGGT-GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCT
*
18444079 ACCGTAA-CC-C-TT-G----G-TC-----C-----A-G---TCCGT-T-CTTAGACTGGGAATG
321 ACCGCAACCCTCGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * **
18444119 AACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCGACAAGTGGGGCT-
386 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGG-TG
* * * * * *
18444183 GGATGCGCAAGCCGAGGATCAGTCGGGTCTCCCTCTACGTGCTACCGATCCTGCT-GTCGCAACC
450 GGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACT-GCAACC
* ** * *
18444247 CTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGATG-AA--A-
513 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAG
* * * * *
18444307 CGAGCGGGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACGAGATGCGCAAGCCGTGGATCGAT
578 CGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGTCGTGGATCGAT
* * * *
18444372 AGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTGTGAGCCAATGCCATTTTTGTGGCTTG
643 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
* * * *
18444437 TAAATTCATACAACGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACAACTCGTTTTTTA
708 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* ** * * * *
18444502 TTTTTCATGATTTTTGAAACTTTTTACGATTAGGGATTTTTTAAAATTTTTTTGGAAGGACTTTT
773 TTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTT
* * * * * *
18444567 AGCCCCAAAATTGGTAGATGTCATCCTTGTATTTTTGTCGGCATGCACAAAAAAATTCAGCTAG
838 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
18444631 AAACTTGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAAT
1 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
18444696 TGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAAGTTT
66 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* **
18444761 GATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACATGCGCACA
131 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * *
18444826 CCCCCCCGGCCCCACCAATCG-CTGGAACCCCAATGCCGCTGGTCAGGTTCTCC-AGCGATGCTC
196 CCCCCCC-GCCCCCCCGATCGTC-AGAACCCTAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTC
** * * *
18444889 CGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACAGGCCTGAGCCCAGCATGTGCTGC
258 CGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTAC
* * * *
18444954 CACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGA
323 CGCAACCCTCGTTC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * *
18445019 ACTCCGTATGCCTAAGTCAACCTACGAAAGGAGCGTGCGGGCGGTCAGCCGGCTAGAAGGGCGGG
387 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGTGGG
* * * * * * *
18445084 ATGTGCAAGCCAGGGATCGGTCGGGTCCCCATCTGCGTGCCGTCGATCCTACTGCTGTAACCCTC
452 ATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACTGCAACCCTC
* ** *
18445149 GGTGC-GGTCCGATCTTAGGCTGGGAATGAACTCTATATGACTAAGCCAACCGACGAAATGAGCG
516 GGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCG
* * * * *
18445213 TGCGGGCGGGCGAGCGGGCGGGCATTACGCCAGCCAAAGAGACGAGATGCGCAAGTCGTTGATCG
580 AGCGGGC--G-G-GCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGTCGTGGATCG
*
18445278 ATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
641 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
* *
18445343 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACGACTCATTTTC
706 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * *
18445408 TATTTTTCATGATTTTTGAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTT
771 TATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTT
* * *
18445473 TTGGCCCCAAAGTTAGTAGACGTGATCCTTGTATCTTTGTTGGCATGCACAAAAAAATTTC-GCT
836 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCT
18445537 AA
900 AA
* *
18445539 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCCCATTTCAGACACTTTAAT
1 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
18445604 GGCTACTGGCAGCAATCCTGTAAAATCTCAAATGCTCTGTAAGGAGGTGTGAGTTCTCGAGGTTT
66 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
18445669 GATGAGGGATA-AGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
131 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * *
18445733 CCCTCCCGGCCCCCCCGATCGTCGGAACTCTAATGCCGCCGATAAGGTTCTCCGACGATGCTCCG
196 CCC-CCCCGCCCCCCCGATCGTCAGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG
* * * * *
18445798 ACGATGGTGCCACGGCGAAGAAAAATGCGGCACCAGCAAATG-CTCGAGCCTAGCATGTGCTACT
260 ACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTACC
* * * * * *
18445862 GCAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTAAGCTTAGACTGGGAATGAA
324 GCAACCCTC-GTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * *
18445927 CTCCGTGTGCCTAAGTCAACCCACGAAATGAGCGTGC-AG-G--C-G-C--CCAGAGGGGCGGGA
388 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGTGGGA
*** * * *
18445984 TGCATGAGCCGGGGATTGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACT-GTCACAACCCTC
453 TGCGCAAGCCGGGGA-TCGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACT-GCAACCCTC
* * * * *
18446048 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAACGT
516 GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGA
* * **
18446113 GCGGGTGGGCAGGCGGGCACTACGCC-GATAAGAGAGACGGGATGCGCAAGTCGTGGATCGATAG
581 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAA-AGAGACGGGATGCGCAAGTCGTGGATCGATAG
* * * *
18446177 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCGATTCTTATGGCTTGTA
645 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
* * *
18446242 AATTCATACAATGGTCCTTTGAGCCTTCACGTGTAGTTTCATGGCAAGACGACTCGTTTTCTATT
710 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * *
18446307 TTTCACGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGG
775 TTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGG
* * * * *
18446372 CCCCAAGCATGGTAGACGTGATCCTTGTATTTTTATTGGCATGCAC-GAAAAACTCAGCTAA
840 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
18446433 AAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCAATTTCAAACACTTTAAT
1 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
18446498 GGCTACTGGCAGTAAACCTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
66 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
18446563 GATGAGGGATAGGGGGCCAATATAAGGGCCGAGTACCAGCACACATCGCACATCATGCGCGCACA
131 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * *
18446628 -CCCCCCGGCCCCCCGATCGCCGGAACCCTAA---------T---G-----C--C---G-TCCGA
196 CCCCCCCGCCCCCCCGATCGTCAGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA
** * * * *
18446669 CGATGGTGCCCCGACGAAGAAAAATGCAGG-ACCAGCACATGCCCGAGCCCAGGATGTGCTGCCA
261 CGATGGTGCCCCGGTGAAGAAAAATGC-GGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCG
* * * * * *
18446733 TAACTCTCAG-TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATACTTAGATTGGGAATGAA
325 CAACCCTC-GTTCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
** * * * * *
18446797 CTCCGTATGCCTAAGTCAAGGCACGAAACGAGCGTACGGGCACTCAACTGGCGA-AAGGGGTGGG
388 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAA-GGGTGGG
* * * * * *
18446861 ATGCGCTAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAAGCCTC
452 ATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACTGCAACCCTC
* * * * *
18446926 GATCTGATCCGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACTGACG-AA--A-CGA
516 GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGA
* * * * * *
18446987 GCGAGCGAGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
581 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGTCGTGGATCGATAGG
** * **
18447052 GTGGTAGGTTTGTTTAGGCACATCTTCATATTTCTGCATGCCAATGTTATTTTTATGGCTTGTAA
646 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* * *
18447117 ATTCATACAATGGTTCCTTAAGCCTTCACGTGGAGATTCATGGCAAGACGACTCGTTTTCTATTT
711 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * *
18447182 TTCACGATTTTTAAAACTTTTTGTAGTTCGGGATTTTTTACAATTTTTTCAGAAGGATTTTTGGC
776 TTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGC
18447247 CCCAAACTTGGTAGACGTGATCCTTGTAATTTTT-TTGGCATGCACAAAAAAATTCAGCTAA
841 CCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * * * *
18447308 AAACCCGAGGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAAT
1 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
18447373 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTTGAGGTTT
66 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
18447438 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGTGTGCACA
131 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * **
18447503 CCCCCCCGCCCCCCCAATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGA
196 CCCCCCCGCCCCCCCGATCGTCAGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA
** *
18447568 CGATGGTGCCTGGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCTAGCATGT-CTACCGC
261 CGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGC
* * * *
18447632 AACCCTCGTTTCGATCTGATCTTAG-GTCGGGAATGAACTCCG-ATGCTTAGGCTGGGAATAAAC
326 AACCCTCG-TTCGATCCGATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * *
18447695 TCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGTTCAACCGGCTAGAAGGGTGGGAT
389 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGTGGGAT
* * * * * * * *
18447760 GCGCCAGCCGGGGATCGACCGGTCACCCTTTACGTGCTGTCGATCCTGCTACTGCAACCCTCGGT
454 GCGCAAGCCGGGGATCGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACTGCAACCCTCGGT
** * * *
18447825 CTGGTTTGATGTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTGAGCG
519 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGAGCG
* * *
18447890 GGCGGGCGGGTGGGCACTACGTCGGCCAAAGAGACGAGATGCGCAAGTCGTGGATCGATAGGGTG
584 GGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTG
* *
18447955 GTAGGT-GGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATT
649 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
* * *
18448019 AATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCATTTTCTATTTTTC
714 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * ** * * *
18448084 ATGATTTTTGAAACTTGTTACGATTCGGGGTTTCTTTAAAATTTTTTTGGAAGGTATTTTT-GCC
779 ACGATTTTTGAAACTTTTTGTGGTTCGGGATTT-TTTAAAATTTTTTCGGAAGG-ATTTTTGGCC
*
18448148 CCAAACTAGGTAGACGTGAT-CTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAA
842 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
18448206 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
1 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
18448271 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTT
66 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
18448335 GATGAGGGATAGGGGGCCAATATCAGGGCCAAGTACCAGCACCCATCACAAATCATGTGCGCACA
131 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* *
18448400 CCCCCCCG-CCCCTCGATCGTCAGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTTCGA
196 CCCCCCCGCCCCCCCGATCGTCAGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA
* * * *
18448464 TGATGGTGCCCGGGTGAAGAAAAATGCGGCACCAGCACATG-CTCGAGCCTAGCATGTGCTGCCG
261 CGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTACCG
* *
18448528 CAACCCTCGTTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGGAATGAAC
325 CAACCCTCGTTC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * ** * *
18448593 TCCGTATACCTAAGTCAACCCACAAAACGAGCGTAG-AGGCTTTCAACCGGCCAGATGGGTGGGA
389 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-GCGGGCGCTCAGCCGGCCAGAAGGGTGGGA
* * * * * * * * ** * *
18448657 TACGCCAGTCAGGGATCGGTCGGGTCACCCTTTACGTGCTGTCGATCCTGTTGCCGCAACCCTCG
453 TGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACTGCAACCCTCG
* ** * * * *
18448722 GTCCGGTCTAATGTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATCGATGAAATAAGAGAG
517 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAT----GAG
* *
18448787 CG-GACGGGGGGGCGGATGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGA
578 CGAG-CGGGCGGGC----GGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGTCGTGGA
* * *
18448851 TCGATAGGGTGGTAGGTGGGTTTAGACACATCTTTATATTTCTGTGTGCCAATGCCATTTTTATG
638 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
* *
18448916 GCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGTAGTTTCATGGCAAGACGACTCGTT
703 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
18448981 TTCTATTTTTCATGATTTTTGAAACTTGTTGCGATTCGAGATTTTTTAAAATTTTTTCGGAAGG-
768 TTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* *
18449045 TGTTTTTGCCCCAAACTTGGTAGACGTGAT-CTTGAATTTTTGTTGGCATGCACAAAAAAATTCA
833 T-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
18449109 GCTAA
897 GCTAA
*
18449114 AAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
1 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
18449179 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGAGGGTGTGAGTTCTCAAGGTTT
66 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * * *
18449244 GATTAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCAATCGCACAACATGTGCGCACA
131 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * *** * * * *
18449309 -CCCCCCGGCCCCCCAATTACCGGAACCCTAATGTCGCCGGTCAGGTTCTCTGACAATGCTCCGA
196 CCCCCCCGCCCCCCCGATCGTCAGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA
** * * * * *
18449373 CGATGGTGCCCCGACGAA-AAGAATACGGCACCAACAGATGCCTGAGCCCAGCATGTGCTACTGC
261 CGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGC
*
18449437 AA--C-C---C--T-CGA---T---CT-GG--T---CT--G-AT-CTTAGACTGGGAATGAACTT
326 AACCCTCGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
*
18449477 CGTATGCCTAAGTCAA--C-C---ACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGAT--
391 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGTGGGATGC
* * * * * * *
18449534 ------C---G---GTCGGG-CCCCCTTCTGCGTGATACCGATCTTACTGCCGCAACCCTTGATC
456 GCAAGCCGGGGATCGTCGGGTCCCCC-TCTGCGTGCTGCCGATCCTACTACTGCAACCCTCGGTC
* * * * * *
18449586 TGGTTCAATCTTAGACTGGGAATGAACACCATATGCCTAAGCCAACAGACGAAATGAGTGGGCGG
520 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA----GCGA
* * * *
18449651 GTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAA-AGATGGGATGCGCAAGCCGCGGATCGATAG
581 GCGGGCGGGCGGGCGGGCACTACGCCGGCCA-AAGAGACGGGATGCGCAAGTCGTGGATCGATAG
* * * *
18449715 GGTGGTAGGTGGGTTTAGGCACATCTTCACATTTTTGCATGCCAATGCCATTTTTATGACTTGTA
645 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
18449780 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
710 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* *
18449845 TTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATCTTTTT-GGAA--AGTTTTG
775 TTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAAT-TTTTTCGGAAGGATTTTTG
* * *
18449907 G-CCCAAATTTGGTGGACATGATCCTTG
839 GCCCCAAACTTGGTAGACGTGATCCTTG
18449934 AAAAATGTGT
Statistics
Matches: 5401, Mismatches: 628, Indels: 345
0.85 0.10 0.05
Matches are distributed among these distances:
854 18 0.00
855 9 0.00
857 216 0.04
858 6 0.00
860 4 0.00
861 89 0.02
862 1 0.00
865 1 0.00
868 1 0.00
869 1 0.00
870 139 0.03
871 5 0.00
872 1 0.00
873 104 0.02
874 428 0.08
875 521 0.10
876 60 0.01
877 7 0.00
878 113 0.02
879 167 0.03
880 4 0.00
881 6 0.00
882 34 0.01
883 4 0.00
884 3 0.00
885 2 0.00
886 2 0.00
888 2 0.00
889 1 0.00
890 1 0.00
891 2 0.00
892 2 0.00
893 29 0.01
894 147 0.03
895 318 0.06
896 190 0.04
897 229 0.04
898 265 0.05
899 572 0.11
900 116 0.02
901 9 0.00
902 36 0.01
903 173 0.03
904 12 0.00
905 107 0.02
906 10 0.00
907 347 0.06
908 744 0.14
909 143 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCCGCCCCCCCGATCGTCAGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA
CGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGC
AACCCTCGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGTGGGATGC
GCAAGCCGGGGATCGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACTGCAACCCTCGGTCT
GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGAGCGGG
CGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
GATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAA
ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
Found at i:18448585 original size:26 final size:26
Alignment explanation
Indices: 18448549--18448599 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18448539 CTGATCCAAT
18448549 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18448575 CTTAGGCTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
18448600 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18450261 original size:26 final size:26
Alignment explanation
Indices: 18450232--18450284 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18450222 CCAATCCGAT
*
18450232 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18450258 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18450284 C
1 C
18450285 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18451857 original size:26 final size:26
Alignment explanation
Indices: 18451821--18451873 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18451811 CCAGTCTGAT
18451821 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18451847 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18451873 C
1 C
18451874 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18452749 original size:26 final size:26
Alignment explanation
Indices: 18452713--18452765 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18452703 TTGGTTTGTT
*
18452713 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18452739 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18452765 C
1 C
18452766 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18453636 original size:26 final size:26
Alignment explanation
Indices: 18453607--18453659 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18453597 CCTGTCCGAT
18453607 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18453633 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18453659 C
1 C
18453660 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18454508 original size:902 final size:900
Alignment explanation
Indices: 18451111--18454535 Score: 4440
Period size: 882 Copynumber: 3.8 Consensus size: 900
18451101 TGTGCTACCG
* * * * * * *
18451111 CAACCCTTGGTCCGGTCCGATGTTAGACTGCGAACGAAC-CTTGTATGCCTAAGCCAACCGACGA
1 CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTC-CGTATGCCTAAGCCAACCGACGA
* * * *
18451175 AACGA-------ACGGGCAGGCGGGCACTACAACGTCCAGAGAGACGGGATGCGCAAGCCGTGGA
65 AACGAGCGGGCGGCGGGCGGGCGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
18451233 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATG
130 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * *
18451298 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGATGACTCGGT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * **
18451363 TTCTATTTTTCACGATTTTCGAAACTATTTACGGTTCGAGATTTTTTAAAATTTTTTCTTAAGGA
260 TTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * * * *
18451428 TTTTTGACCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGTCATGCACAAAAACAATCAG
325 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAG
18451493 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
390 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * **
18451558 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCAAG
455 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAG
* * *
18451623 GGTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
520 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
18451688 CACA----CC-A----CCC-ATCGTCGGAACCCCAAT---GCCGTC-GG---TCAGGT-T-CTCC
585 CACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGTCAGGTTCTCAGGTGTGCTCC
* *
18451734 GGTGATGGTGCCCTGACGAAGAAAAATACGGTACCAGCACATGCCCGAGCCCAGCATGTGCTACC
650 GGTGATGGTGCCCCGACGAAGAAAAATACGGTACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* ** *
18451799 GCAACCCTCCGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
715 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * *
18451864 CTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAG-TCGGCCAAAGGGGTGGG
780 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCT-GGCCAGAGGGGCGGG
** * * * * *
18451928 ATGCGTAAG-TCAGGGATCAACCGGGCCCCCCTCTGCGTGCTACCGATCCTGCTG-TCA
844 ATGCACAAGCTGA-GGATCAATCGGGTCCCCCTCTACGTGCTATCGATCCTGCTGCT-A
* * * * * *
18451985 CAACCCTCGGTCCAGT-TCAATCTTATACTGGGGATGAACTCTGTATGCCTAAGCCATCTGACGA
1 CAACCCTCGGTCCAGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * *
18452049 AACGAGCAGGCGGGTGGGCGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCATGG
65 AACGAGCGGGC-GGCGGGCGGGCGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
18452114 ATCGATAGGGTGGTAGGTGGATTTAGGTACATCTTCATATTTCTGCATGCAAATGCCATTTTTAT
129 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
18452179 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * * * *
18452244 TTTCCATTTTTCATGATTTTTGAAACTTTTTATGCTTCGGTATTTTTTACAATTTTTTCGAAAGG
259 TTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * * *
18452309 AGTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTCA
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCA
*
18452374 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
18452439 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTCAAAGGGGTGTGAGTTCTTG
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAAGGGGTGTGAGTTCTTG
* *
18452503 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCACACATCATGCG
518 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
* * * * *
18452568 TGCACACCCCCCGACCCCCCCGATCGCCGGAATCCTAATACCG-C--C-GG---TCAGGT-T-CT
583 CGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGTCAGGTTCTCAGGTGTGCT
** * ** *
18452624 CCGGTGATGGTGCCCCGGGGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTG
648 CCGGTGATGGTGCCCCGACGAAGAAAAATACGGTACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * ** *
18452689 CTGCAACCCTCGGTTTGGTTTGTTCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
713 CCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * ** * *
18452754 AACTCCATATGCCTAAGTCAACTCATGAAACAATTGTGCGGGCACTCAGCCGGCCAGAGGGGCTG
778 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCTGGCCAGAGGGGCGG
* * * * * * * * * *
18452819 GATGCACAAGCCGTGGATCAATCCGGTCCCCATCGATGTGCCATCAAACCTGCTGCCA
843 GATGCACAAGCTGAGGATCAATCGGGTCCCCCTCTACGTGCTATCGATCCTGCTGCTA
* * * * *
18452877 CAACCCTCGGTCCAGCCTGATCCTAGACTGGGAATGAACTTCTTATGCCTAAGCCAACCGACGAC
1 CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
18452942 ACGAGCGGGCGGC---CGGACGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTAGAT
66 ACGAGCGGGCGGCGGGCGGGCGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* ** *
18453004 CGGTAGGGT-GTAGGT-GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATACCATTTTTATGG
131 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
** *
18453067 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTC-CGCAAAGTTTCATGGCAAAACGACTCGTTT
196 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * *
18453131 T-TATTTTTCATGATTTTTGAAATTTTTTGA-GGTTTGGGATTTTTTAAAATTTTTTTGGAAGGA
261 TCTATTTTTCATGATTTTCGAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * * *
18453194 GTTTTGGCCCCAAACATGGTAGACGTCATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
325 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAG
* * *
18453259 CTAAAAAATCGATGTGTACAAGATTTTGTGACCATTTGATAAAAA-TGTCCCCATTTTAGACACT
390 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA-AAAAAGTGTCCCCATTTCAGACACT
* * *
18453323 TTAATGGCTACTGGTAGCAAACCTGTGAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTCTGGA
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGA
18453387 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
519 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
* * * * *
18453452 GCACACCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTGTCTGGTGATGC
584 GCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCG-TCAGGTTCTCAGGTG-TGC
* * * * * *
18453517 TCCGGCGATGGTGCCCCGACAAAGAAAATTACGGTACCGGCACTTGCCCGAGCCCAGCATGGGCT
647 TCCGGTGATGGTGCCCCGACGAAGAAAAATACGGTACCAGCACATGCCCGAGCCCAGCATGTGCT
*
18453582 GCCACAACCCTCGGTCCT-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
712 GCCGCAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* *
18453646 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCTGGCCAGAGGGGC
776 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCTGGCCAGAGGGGC
* *** * ** *
18453711 GGGATGTACAAGCTGAGGATTGGTTGGGTCCCCCTCTACGTAATGTCGATCCTGCTGCTA
841 GGGATGCACAAGCTGAGGATCAATCGGGTCCCCCTCTACGTGCTATCGATCCTGCTGCTA
** * ** * * *
18453771 CAAATCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTCTGCCTAAACTAACCGAC-AA
1 CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
18453835 ATAGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGAAAGCCGTGG
66 A-CGAGCGGGC-GGCGGGCGGGCGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
18453900 ATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
129 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * * *
18453965 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGCTTCATGGTAGGACGACTCGT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
18454030 TTTCTATTTTTAATGA-TTTCGTAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGG
259 TTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* *
18454094 ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAAATCA
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCA
* *
18454159 CCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACT
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
18454224 TTAATGGCTACTGGTAGCAAACCTGTAAAATCTGAAATGCTCTTTTAGGGGGTGTGAGTTCTTGA
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGA
* * **
18454289 GGTTTGATGAGAGATGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGC
519 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
* * * * *
18454354 GCGCACCCCCCGGCCGCCCCGATCGTCGGAACCTCAATGCTGCCAGTCAGGTTCTCAGGTGATGC
584 GCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCC-GTCAGGTTCTCAGGTG-TGC
* * * * * * *
18454419 TTCGTTTATGGTGCCCTGATGAAGAAAATTGC-GTCACCAGCACATGCCCGAGCCCAGCATGTGC
647 TCCGGTGATGGTGCCCCGACGAAGAAAAATACGGT-ACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
18454483 TGTCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGAAATGAACTCCGTATGC
711 TGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
18454536 CTAAGCCAAC
Statistics
Matches: 2208, Mismatches: 285, Indels: 88
0.86 0.11 0.03
Matches are distributed among these distances:
874 55 0.02
875 1 0.00
881 3 0.00
882 462 0.21
883 116 0.05
884 205 0.09
885 37 0.02
886 78 0.04
887 8 0.00
888 54 0.02
891 10 0.00
892 294 0.13
893 4 0.00
894 266 0.12
895 5 0.00
898 51 0.02
899 6 0.00
900 84 0.04
901 228 0.10
902 240 0.11
903 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGGCGGGCGGGCGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC
ACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGTCAGGTTCTCAGGTGTGCTCCG
GTGATGGTGCCCCGACGAAGAAAAATACGGTACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCTGGCCAGAGGGGCGGGAT
GCACAAGCTGAGGATCAATCGGGTCCCCCTCTACGTGCTATCGATCCTGCTGCTA
Found at i:18457030 original size:26 final size:26
Alignment explanation
Indices: 18456994--18457046 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18456984 CTGGTCTGAT
18456994 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18457020 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18457046 C
1 C
18457047 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18457935 original size:26 final size:26
Alignment explanation
Indices: 18457899--18457951 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18457889 CCGATCTGAT
*
18457899 CTTAGACTGGGATTGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18457925 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18457951 C
1 C
18457952 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18458821 original size:26 final size:26
Alignment explanation
Indices: 18458785--18458837 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18458775 TCGGTCTGAT
*
18458785 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18458811 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18458837 C
1 C
18458838 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18460601 original size:26 final size:26
Alignment explanation
Indices: 18460561--18460613 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18460551 CCGGTCCGAT
* *
18460561 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAAATCCGTATG
18460587 CTTAGACT-GAGAATGAAATCCGTATG
1 CTTAGACTGGA-AATGAAATCCGTATG
18460613 C
1 C
18460614 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAAATCCGTATG
Found at i:18461488 original size:26 final size:26
Alignment explanation
Indices: 18461459--18461511 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18461449 CTAGTTCGAT
*
18461459 CTTAGACTGGGAATCAACTTCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
18461485 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
18461511 C
1 C
18461512 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:18464135 original size:26 final size:26
Alignment explanation
Indices: 18464099--18464151 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18464089 CCAGTGCGAT
18464099 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18464125 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18464151 C
1 C
18464152 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18464459 original size:899 final size:899
Alignment explanation
Indices: 18456117--18465888 Score: 11905
Period size: 903 Copynumber: 11.0 Consensus size: 899
18456107 CTAGTCCGAT
* * * *
18456117 CTTAGACTGGGAATGAACTCCATATGCTTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * ** *
18456182 CAGCCAGAGGGACAGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTTTACGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTTTGTGTGCTGTAGATCC
* ** ** * *
18456247 TGCTGCCACAACCTTTGGTCTAGTCTGATCTTGGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18456312 CCGACGAAACGAGCGGCTGGGCGGGCGTGCGGGCACTACG-CTGGCCAGAGAGACGGGATGCACA
196 CCGACGAAATGA---GC-GGGCGGGCGGGCGGGCACTACGTC-AGCCAGAGAGACGGGATGCGCA
* ** * *
18456376 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTTCCAATGCA
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * * *
18456441 ATTTTTATGGCTTTTAAATTCATACAATGGGCCGTTAAGCCCTCACGTGAAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * ** * *
18456506 TGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTG
386 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
* * *
18456571 TCGGAAGAAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
451 TTGGAAG-GGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
18456636 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
18456701 CAGACACTTTAATGGCTACCGGCAGCAAACCTGTAAAATCTCAAAGGCTCTTTAAGGGGGTGCGA
580 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * **
18456766 GTTCTCGAGGTCTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATTGCACA
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
* * * * * *
18456830 TCATGTGCGCACA-CC-CCCCCGGCCCCCCCGATTGTCGAAACCCCAATGTCGCCGGTCAGGGTC
710 TCATATGCACACACCCTCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * ** * * *
18456893 TCCGGTGATGCTCCGATGATGGTGCCCCGGTGAAGAGAAATGCGGCACCAGCACATGCCTGAACC
775 TCCGGCGATGCTCCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * **
18456958 CAGCATGTGCTGCCACAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATG
840 CAGCATGTGCTACCGCAACCCTC-ATCCAGTGC-GATCTTAGACTGGGAATGAA-TCCGTATG
* *
18457020 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
18457085 CGGCCA-ACGGGGAGGGATGCGCAAGTCGGGGATCGGCCAGGTCCCCCTCTGTGTGCTACT-GAT
66 CGGCCAGA-GGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTTTGTGTGCT-GTAGAT
* * * * * *
18457148 CCTACTGCCGCAACCCTCAATCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTGCCACAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
** * * *
18457213 AACCGACGAAACAAGGGGGCGAGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
194 AACCGACGAAATGAGCGGGC----GGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGC
* ***
18457278 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTATGTGCCAATGC
255 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * *
18457343 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACGTGATGTTTCATGGCAAG
320 CATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
18457408 ACAACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
385 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTT
*** * * ** * * * *
18457473 TTCCAAAGGATTTTTGGGCCCAAACTTTCTAGACGTGAACCTTGTATTTTTGTTGGTAGGCATAA
450 TTTGGAAGG-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
18457538 AAAAATTCAGCCAAAAAGTCGAAGTGTACGAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
18457603 TCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCACATACTCTTTAAGGGGGAGTG
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
18457668 AGTTGTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGCAC
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
* * * * * *
18457733 ATGATGTGCGCACACCC-CCCCCGGCCCCACCGATCATCGGAACCCCAATGCCGCTGGTCAGGTT
709 ATCATATGCACACACCCTCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * * *
18457797 CTCCGACGACGCTCCGACGACAGTGCCCCAACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
774 CTCCGGCGATGCTCCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
** * * * * *
18457862 CCAGCATGTGCTGTCACAACTCTCGGTCC-GAT-CTGATCTTAGACTGGGATTGAACTCCATATG
839 CCAGCATGTGCTACCGCAACCCTC-ATCCAG-TGC-GATCTTAGACTGGGAATGAA-TCCGTATG
* * *
18457925 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
** * *
18457990 CGGCCAGAGGGGCGGGATGCGCAAGCC-AGGGATCGACCGGGTCCCCCTTTGTTTGCTGTTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGGTCGGGTCCCCCTTTGTGTGCTGTAGATC
*** * * *
18458054 CTGCTGCTGTAACGCTCAATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCA
130 CTGCTGCCACAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * ** * * * *
18458119 ACTGATGAAATGA----GCGGGC--AC-TACAC--CG--A-CTAGAGAGAAGGGATGCACAAACC
195 ACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCC
**
18458172 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * *
18458237 TTATGTCATGTAAATTCACACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGACGAC
325 TTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
** * *
18458302 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
390 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGG
* * * * *
18458367 AAAGAGTTTTGGCCCCAAAGTTGGTAGACATGATACTTGTATTTTTTTTGGCATGCAC-AAAAAA
455 -AAGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
18458431 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTTGAGA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
18458496 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTC
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
18458561 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
649 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
* * * ** *
18458626 GTGCACACA--C-CCCGCGGCCCTCTTGATCGTCGGAACCCCAATGCCGCCGGTCCGGTTCTCCG
714 ATGCACACACCCTCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * * *
18458688 GCGATGCTCTTG-CGATGGTACCCCGATGAAGAAAAATGCGGCACCAGCACATTCTCGAGCCCAG
779 GCGATGCTC-CGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
** ** * * *
18458752 CATGTGCTGTCGCAACCCTTTGTTCGGT-CTGATCTTATACTGGGAATGAACTCCGTATG
843 CATGTGCTACCGCAACCC-TCATCCAGTGC-GATCTTAGACTGGGAATGAA-TCCGTATG
* * * * *
18458811 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * **
18458876 CGGCCATAGGGGCGTGATGCGTAAGCTGGGGATCGCTCAGGTCCTCCTCTGCATGCTGTCA-ATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTTTGTGTGCTGT-AGATC
* * * * *
18458940 CTACTGCCATAACCCTC-GATCCAGTCCAATCTTAGACTGGGAGTGAACTCCGTATGCCTAAGCC
130 CTGCTGCCACAACCCTCAG-TCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
18459004 AACCGACG-AA--A-CGAGTGGGTGGGCGGGCAC-ACATC-GACCAAAGAGACGGGATGCACAAG
194 AACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACGTCAG-CCAGAGAGACGGGATGCGCAAG
* * *
18459063 CTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGGCAATGCCAT
258 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * *
18459128 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAGGTTTCATGGCAAGACG
323 TTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * * *
18459193 ACACGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCAGTTCGAGATTTTTTGAACTTTTTTC
388 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTT
* * * * * *
18459258 GAAATGAGTTTTGGCCCCAAACTTGGTGGACTTGATCCTTGTATTTTTTTTTGCATGCACAAAAA
453 GGAA-GGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * *
18459323 TATTCAGCTAAAAACTAGAAGTGTACTAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCA
517 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
** * * * *
18459388 GACACTTTAATGGCTACTATCAACAAACTTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGC
582 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
18459453 TCTTGAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
647 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
* ** * * * *
18459518 ATGTGTGCACA--C-CCCCCGGCCTCCCCGATCGTCGAAACCTCAATGCCGTCGGTCAGGTTCTC
712 ATATGCACACACCCTCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
** * ** *
18459580 CAACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
777 CGGCGATGCTCCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * *
18459645 GCACGTGCTACTGCAACCCTCGAT-CTGATCCGATCTTAGACTAGGAATGAACTCCGTTTG
842 GCATGTGCTACCGCAACCCTC-ATCCAG-TGCGATCTTAGACTGGGAATGAA-TCCGTATG
* ** * *
18459705 CTTAGACTGGGAATCAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * *** * *
18459770 TGGCCGGAGGGGTGGGATGCACACGTCGGGGATTGGTCGGGTCCCCCTCTACATGCTGCCA-TTC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTTTGTGTGCTG-TAGATC
* * * ** * * * *
18459834 TTGCTGCCACAATCCTCGGTCCAATCCAATTTTAGACTGGGAATCAACTTCGTATGCCTAAGCCA
130 CTGCTGCCACAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
18459899 ACCGACGAAACT-A--------GCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGC
195 ACCGACGAAA-TGAGCGGGCGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGC
* *
18459955 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
259 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
18460020 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACTA
324 TTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
18460085 CTCGTTTTCTATTTTTCAAGATTTTTAAAACTTTTTGGGGTTCGGGATTTTTTAAAATTTTTTTG
389 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTG
* *
18460150 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAA
454 GAAGG-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
18460215 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
518 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
18460280 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
583 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
18460345 CTCAAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
648 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
* * * * * * * *
18460410 TGTGCGCACACCC-GCTCCGGCCACCCTGATCGTCGGAACCCCAATGCTGCCGATCAGG-T-T--
713 TATGCACACACCCTCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * ** *
18460470 --C--T-CT--GACGATGGTGCCCTGACGAAGAAAAATATGGCAACAGCACATGCCCGAGCCCAG
778 GGCGATGCTCCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * * *
18460528 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGAAATGAACTTCGTATG
843 CATGTGCTACCGCAACCCTC-ATCCAGTGCGATCTTAGACTGGGAATGAA-TCCGTATG
* * * *
18460587 CTTAGACTGAGAATGAAATCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * ** *
18460652 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGCCGGGT-CCCCTTCTGCATGCTGCCA-AT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTT-TGTGTGCTG-TAGAT
* * * * *
18460715 CCTGCTGCCACAACCCTCGGTCTGATCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTGCCACAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * ** * * *
18460780 AACCGACG-AA--A-CGAGCAGGCGGGCGGGCACTACGCCGGTTAGAGATACGGGATGCACAAAC
194 AACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGC
* * *** *
18460841 CGTGGATCGAGAGGGTGGTCA-TTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGTCAT
259 CGTGGATCGATAGGGTGGT-AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * * *
18460905 TTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTACACGTGAAGTTTCATTGCAAGACG
323 TTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * ** * * * *
18460970 ACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTAAAAATTTTTTC
388 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTT
* ** * *
18461035 GAAAGGAGTTTTTTCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAC
453 GGAAGG-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
18461100 AATTCAACTAAAAACTCAAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCA
517 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
18461165 GACACCTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
582 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
18461230 TCTCAAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCATA-TACCAGCACCCATCACACAT
647 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA-AGTACCAGCACCCATCACACAT
* ** * * *
18461294 CATGTGTGCACACCCCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
711 CATATGCACACACCCTCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
** * *
18461359 CCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCC
776 CCGGCGATGCTCCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * * * * *
18461424 AGCATGTGC-AGTCGTAAGCCTCGGTCTAGTTCGATCTTAGACTGGGAATCAACTTCGTATG
841 AGCATGTGCTA-CCGCAACCCTC-ATCCAGTGCGATCTTAGACTGGGAATGAA-TCCGTATG
* *
18461485 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
** ** * * * *
18461550 CAACCAGAGGGATGGGATGCACAAACCGAGGATC-GACTGGGTCCCCCTTTGCGTGCTGTCA-AT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTC-GGGTCCCCCTTTGTGTGCTGT-AGAT
*** * *
18461613 CCAAATGCCACAACCCTCGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTGCCACAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
18461678 TACCGACGAAATGAGCGGGCGGGCGGGGCGGGCACTACGCCATCCAAAGAGACGGGATGCACAAG
194 AACCGACGAAATGAGCGGGCGGGC-GGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAG
*
18461743 CCGTGGATCGATAGCGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
258 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * * *
18461808 TTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGACTTCACATGAAGTTTCATGGCAAGACG
323 TTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * ** * * *
18461873 TCTGGTTTTCTATTTTTCACGATTTTCAAAACTTCTTGCGGTTTGAGATTTTTTAGAATTTTTTT
388 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTT
*
18461938 GGAAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAA
453 GGAAGG-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
18462002 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCA
517 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
18462067 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTTAGGGGAGTGTGAG
582 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-GTGTGAG
* * *
18462131 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCAGAACCCATCGCACAT
646 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
* * * * *
18462196 CATGTGCGCACA--C-CCCCCGGCCCCCCCGATCATTGGAACCCCAATGCCGCCAGTCAGGTTCT
711 CATATGCACACACCCTCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * *
18462258 CCGGCGATGCTCCGACAATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCATATGCCCGAGCCC
776 CCGGCGATGCTCCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * *
18462323 AGCATGTGCTGCTGCAA----C--CC--T-CGATC-----C---G---G--TCTG-A--
841 AGCATGTGCTACCGCAACCCTCATCCAGTGCGATCTTAGACTGGGAATGAATCCGTATG
* * * * *
18462357 CTTAGACTGGGAATGAACTCTGCATGCCTAAGTCAACCCACAAAATGAGCGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * * * **
18462422 CGGCTAGAGGGGCGGGATACGCAA-CTCGGGGATAGGTCGGGTCCCCCTCTGTGTGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGC-CGAGGATCGGTCGGGTCCCCCTTTGTGTGCTGTAGATC
* * ** * ** * *
18462486 CTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGATTGGGAATGAACTTTGAATGCCTAAGCCC
130 CTGCTGCCACAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
18462551 ACCGAC-AAA--A-CGAGC---C-GGCGGGCACTACGTCAGCCAGAGAGACGGGCTGCGCAAGCC
195 ACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCC
* *
18462608 GTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC-TGCCAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
18462672 TTATGGCTTGTAAATTCAAACAATGGTCCCTGAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
325 TTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
18462737 TCGTTTTCTATTTTTCACT-ATTTTTGAAACTTTTTGCGATTCGAGATTTTTTTAAATTTTTTCG
390 TCGTTTTCTATTTTTCA-TGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTG
* * *
18462801 GAACGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTGGTATTTTTTTTGGCATGCACAAAAAA
454 GAA-GGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
18462866 ATTCAGCTAAAAACTTGAAGTGTTCAAGATTTTCTGACCATTTGAAAAAAGTATCCCCATTTCAG
518 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
18462931 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTC
583 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
18462996 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCATCACCCATCACACATCA
648 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
* **
18463061 TATGCACACACCCTTCCCCCCGGCCCTCCCGATAATCGGAA-CCCATATGCCGCCGGTCAGGTTC
713 TATGCACACACCC-T-CCCCCGGCCCCCCCGATCGTCGGAACCCCA-ATGCCGCCGGTCAGGTTC
* * * * *
18463125 TCCGGTGATGTTTCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGATCC
775 TCCGGCGATGCTCCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * *
18463190 TAGCCTGTACTGCCGCAA-CC-C-T-C---G-G-TC-----C--GG--T---T-CG-AT-
840 CAGCATGTGCTACCGCAACCCTCATCCAGTGCGATCTTAGACTGGGAATGAATCCGTATG
* *
18463226 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
** ** * * * **
18463291 CAACCAGAGGGATGGGATGCACAAACCGAGGATC-GACTGGGTCCCCCTTTGCATGCTGTCA-AT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTC-GGGTCCCCCTTTGTGTGCTGT-AGAT
* * *
18463354 CCTACTGCCACAACCCTCGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTGCCACAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
18463419 TACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACGCCATCCAAAGAGACGGGATGCGCAAGC
194 AACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGC
* *
18463484 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCTTT
259 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
18463549 TTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
324 TTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
*
18463614 CTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTG
389 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTG
*
18463679 GAATGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAA
454 GAA-GGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
18463744 ATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-TGTCCCCATTTCAG
518 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
18463808 ACACTTTAATGGCTACAGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
583 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
18463873 CTCAAGGTTTGATGAGGCATAGGGTAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
648 CTCGAGGTTTGATGAGGGATAGGG-GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
* * * * **
18463938 TTATGCACACA-CC-CCCTCGG-GCCCTCGATCGTCGGAACCCCAATGCCGTTGGTCAGGTTCTC
712 ATATGCACACACCCTCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* ** * * *
18464000 TGGCGATGCTCCGGTGATGGTCCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCA
777 CGGCGATGCTCCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
*
18464065 GCATGTGCTGCCGCAACCCTCGATCCAGTGCGATCTTAGACTGGGAATGAACTCCGTATG
842 GCATGTGCTACCGCAACCCTC-ATCCAGTGCGATCTTAGACTGGGAATGAA-TCCGTATG
* *
18464125 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * *
18464190 CGGCCAGAGGGGCGGGATGCGTAAGCTGGGGATCGGTCGGGTCCCCCTATGTGTGCTGTAGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTTTGTGTGCTGTAGATCC
* * * * *
18464255 TGCTGCCACAACCCTCAGTTCGGTCTAATCTTAGACTAGGAATAAACTCTGTATGCGTAAGCCAA
131 TGCTGCCACAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
18464320 CTGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGGAAGCCG
196 CCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCG
**
18464385 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATAACAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
18464450 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
18464515 CGTTTTCTATTTTTCAAGATTTTTTAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTTGG
391 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTTGG
* *
18464579 AAGGATTTCTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAATAA
455 AAGGGTTT-TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
18464644 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
18464709 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
18464774 TCGAGGTTTGATGAGGGATTGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
649 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
* * * *
18464839 GTGCGCACA-CC-ACCCCGGCCCCCCCGATCGTCGGAACCCCTATGCCGCCGGTCAGGTTCTCCG
714 ATGCACACACCCTCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* ** * ** *
18464902 GCGATGCTCTGGTGATAGTGCCCTGGTGAAGAAAAATGCGGCACCAGCACATTCCCGAGCCCAGC
779 GCGATGCTCCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* *
18464967 ATGTGCTACCGCAACCCTCAGTCTAGTTCGATCTTAGACTGGGAATGAAATCCGTATG
844 ATGTGCTACCGCAACCCTCA-TCCAGTGCGATCTTAGACTGGGAATG-AATCCGTATG
*** *
18465025 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGGAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * ** * * *
18465090 CGGCCAGAGGAGTGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTTTGTGTGTTGTCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTTTGTGTGCTGTAGATCC
* * * * * * * *
18465155 TGCTGTCGCAACCCAT-AATCTGGTCTGATCTTAGATTGGGAATGAACACCGTATTCCTAAGCCA
131 TGCTGCCACAACCC-TCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
18465219 ATCGACGAAATGAGCGGGCGGGCGGGCAGGTGGGTACTACG-CTGGCGAGAGAAACGGGATGCGT
195 ACCGACGAAATGAGCGGGCGGGCGGGC----GGGCACTACGTC-AGCCAGAGAGACGGGATGCGC
*
18465283 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGCATGCCAATGC
255 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
18465348 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
320 CATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
18465413 ACGA-TCCGTTTTGTATTTTTTATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTTAAATTT
385 ACGACT-CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTT
* * * * * *
18465477 TTTTAGTAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCCTGTATTTATGTTGGCATGCACA
449 TTTTGGAAGG-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
18465542 AAAAAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAAT
513 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
18465607 TTCACACACTTTAATGGCTACTGGTAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
578 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
18465672 GAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
643 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
* * *
18465737 CATCATGTGCGCACACCC-CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGT
708 CATCATATGCACACACCCTCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * ** * *
18465801 TCTCCGGTGATGCTCCGACGATGGTGCCCTGGTGAAG-AATATTCGGCACCAGCACATGCCCGAG
773 TCTCCGGCGATGCTCCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
*
18465865 CACAGCATGTGCTACCGCAACCCT
838 CCCAGCATGTGCTACCGCAACCCT
18465889 GTGCCAATGA
Statistics
Matches: 7770, Mismatches: 936, Indels: 325
0.86 0.10 0.04
Matches are distributed among these distances:
862 177 0.02
863 271 0.03
864 8 0.00
865 2 0.00
867 4 0.00
868 121 0.02
869 164 0.02
870 6 0.00
871 4 0.00
872 160 0.02
873 103 0.01
874 13 0.00
875 3 0.00
876 1 0.00
877 185 0.02
878 287 0.04
879 1 0.00
881 9 0.00
882 263 0.03
883 5 0.00
884 3 0.00
885 3 0.00
886 785 0.10
887 43 0.01
888 197 0.03
889 251 0.03
890 19 0.00
891 447 0.06
892 8 0.00
893 289 0.04
894 498 0.06
895 7 0.00
896 3 0.00
897 9 0.00
898 273 0.04
899 690 0.09
900 434 0.06
901 15 0.00
902 194 0.02
903 872 0.11
904 533 0.07
905 409 0.05
906 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTTTGTGTGCTGTAGATCC
TGCTGCCACAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGA
AGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATAT
GCACACACCCTCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
GATGCTCCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTACCGCAACCCTCATCCAGTGCGATCTTAGACTGGGAATGAATCCGTATG
Found at i:18465035 original size:26 final size:26
Alignment explanation
Indices: 18464999--18465051 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18464989 CTAGTTCGAT
18464999 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
18465025 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
18465051 C
1 C
18465052 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:18465623 original size:904 final size:897
Alignment explanation
Indices: 18454488--18465888 Score: 13847
Period size: 899 Copynumber: 12.8 Consensus size: 897
18454478 TGTGCTGTCG
* ** * **
18454488 CAACCCTCAGTCTGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACTAACG-A
1 CAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
18454552 A--AG-GAGCGGGCGGGCGAGCACTACG-TCAGCCAGAGAGACGGGATGTGCAAGCCGTGGATCG
66 ATGAGCGGGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
*
18454613 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTAATGGCT
130 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* *
18454678 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAGGTTTCATGGCAAGACGACTCGTTTTC
195 TGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * * * *
18454743 TATTTTTCACGATTTTTGAAACTTTTTGAGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGTGTT
260 TATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTT
** * * * *
18454808 TTTACCCCAAACCTAGTAGACGTGATCCTTGTAGTTTTT-TTGGCATGCACAAAAAAAATCAGCT
325 TTGGCCCCAAACTTGGTAGACGTGATCCCTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * *
18454872 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCGGATACTTTA
389 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * *
18454936 ATGGCTATTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAGGGGGGTGTGAGTTCTCAAGGT
454 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * * * *
18455001 TTGATGACGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
519 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATATGCACA
* * * * * * *
18455066 CACCCCCCCTGG-CCCTCCGATCG-CTGGAACCCCAAAGCTGCCGGTCAAGTTCTCCTGTGATGC
584 CACCCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
* * * * *
18455129 TCAGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCAAGCTCAGCATGTGCT
648 TCCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * *
18455194 GCTGCAACCCTCGGTTC-GATCCGATCTTCGATTGGGAATGAACTCCGTATGCTTAGACTGGGAA
713 ACCGCAACCCTC-G-TCAG-T-CGATCTTAGACTGGGAATGAA-TCCGTATGCTTAGACTGGGAA
* * * * * * *
18455258 TGAACTCCATATGCCCACGTCAACCCACGAAATGAGCGTGTGGGCGCTCAGCCGGCCAGATGGGC
773 TGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
** * ** * * * * * *
18455323 AAGAGGCGCAAGCC-AGGGATCGGTCGGGTCCCCCTCTGGGTGCTGCCGATCTTGCTACCG
838 GGGATGCGCAAGCCGA-GGATCGACCGGGTCCCCCTTTGTGTGCTGTCGATCCTGCTGCCA
* * * * * * ** *
18455383 CAACCTTCGGTCCGATCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAATCCAAGTGATGAA
1 CAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * * *
18455448 ACGAGCGGGCAGGAGGGAGGGCACTACGCCGACCAGAGAGACGGGATCCGCAAGCCGTGGATCGA
66 ATGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
18455513 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TGGCATGCCAACGCTATTTTTATGGCT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCATTTTTATGGCT
**
18455577 TGTAAATTCTTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
195 TGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* ** *
18455642 TATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTT
260 TATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTT
** * * *
18455707 TTGGCCCCAAACTCAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAACATTCAGCTA
325 TTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
18455772 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
** ** * *
18455837 TGGCTACTGGTTGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCAGGTGTGAATTCCCGAGGTT
455 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * * * *
18455902 TCATGAGGGATAGGGGGCCAATATGAGGG-CAAGTACCAGCACCCATCACACATCATGTGCGCAG
520 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATATGCACAC
* * * * * *
18455966 A-CCCCCCCGG-CCCCCCGATCATCAGAATCCCAATGCCGCCGGTTAGGTTCTCTGACGATGCTC
585 ACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC
** * * * * * * * * *
18456029 CGGTGGTGGAGCCCCGATGAAAAAAAATACGGCACCACCACATGCCTGAGCCCAGCATGTGCTGC
650 CGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
**
18456094 CATAA-CC-C-TC-G--G----T---CT----A-G--TCCG-AT-CTTAGACTGGGAATGAACTC
715 CGCAACCCTCGTCAGTCGATCTTAGACTGGGAATGAATCCGTATGCTTAGACTGGGAATGAACTC
* * * * * * *
18456137 CATATGCTTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGACAGGATGC
780 CGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
** **
18456202 GCAAGCCGAGGATCGGTCGGGTCCCCCTTTACGTGCTGTCGATCCTGCTGCCA
845 GCAAGCCGAGGATCGACCGGGTCCCCCTTTGTGTGCTGTCGATCCTGCTGCCA
* ** ** * *
18456255 CAACCTTTGGTCTAGTCTGATCTTGGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
18456320 ACGAGCGGCTGGGCGGGCGTGCGGGCACTACGCTGGCCAGAGAGACGGGATGCACAAGCTGTGGA
66 ATGA---GC-GGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
** * *
18456385 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTTCCAATGCAATTTTTATG
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * * * * *
18456450 GCTTTTAAATTCATACAATGGGCCGTTAAGCCCTCACGTGAAGTTTCATGGCAAGATGACTCGTT
192 GCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * ** * * * *
18456515 TTTTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTGTCGGAAGAA
257 TTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGA
* *
18456580 GTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
322 GTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
18456645 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
387 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
18456710 TAATGGCTACCGGCAGCAAACCTGTAAAATCTCAAAGGCTCTTTAAGGGGGTGCGAGTTCTCGAG
452 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * ** * *
18456775 GTCTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATTGCACATCATGTGCG
517 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATATGCA
* * * * *
18456839 CACA-CCCCCCCGGCCCCCCCGATTGTCGAAACCCCAATGTCGCCGGTCAGGGTCTCCGGTGATG
582 CACACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
* * ** * * *
18456903 CTCCGATGATGGTGCCCCGGTGAAGAGAAATGCGGCACCAGCACATGCCTGAACCCAGCATGTGC
647 CTCCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
18456968 TGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
712 TACCGCAACCCTC-GTC-AGTC-GATCTTAGACTGGGAATGAA-TCCGTATGCTTAGACTGGGAA
* *
18457033 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCA-ACGGGG
773 TGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA-GGGG
* * * * * * * * *
18457097 AGGGATGCGCAAGTCGGGGATCGGCCAGGTCCCCCTCTGTGTGCT-ACTGATCCTACTGCCG
837 CGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTTTGTGTGCTGTC-GATCCTGCTGCCA
* * * *
18457158 CAACCCTCAATCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
** * *
18457223 ACAAGGGGGCGAGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
66 ATGAGCGGGC----GGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* ***
18457288 TCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATG
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * * * *
18457353 GCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACGTGATGTTTCATGGCAAGACAACTCATT
192 GCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * ***
18457418 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCCAAAGGA
257 TTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGA
* * ** * * * * *
18457483 TTTTTGGGCCCAAACTTTCTAGACGTGAACCTTGTATTTTTGTTGGTAGGCATAAAAAAATTCAG
322 GTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
18457548 CCAAAAAGTCGAAGTGTACGAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
387 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * * * *
18457613 TAATGGCTACTGGCAACAAACCTGTAAAATCTCACATACTCTTTAAGGGGGAGTGAGTTGTTGAG
452 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * * *
18457678 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGCACATGATGTGCG
517 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATATGCA
* * * * *
18457743 CACACCCCCCCCGGCCCCACCGATCATCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGACG
582 CACACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
* * *
18457808 CTCCGACGACAGTGCCCCAACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
647 CTCCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
** * * * * *
18457873 TGTCACAACTCTCGGTCCGATCTGATCTTAGACTGGGATTGAACTCCATATGCTTAGACTGGGAA
712 TACCGCAACCCTC-GTCAG-TC-GATCTTAGACTGGGAATGAA-TCCGTATGCTTAGACTGGGAA
* * *
18457938 TGAACTCCGTATGCCTAAGTCGACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGC
773 TGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * **
18458003 GGGATGCGCAAGCC-AGGGATCGACCGGGTCCCCCTTTGTTTGCTGTTGATCCTGCTGCTG
838 GGGATGCGCAAGCCGA-GGATCGACCGGGTCCCCCTTTGTGTGCTGTCGATCCTGCTGCCA
* * * * * *
18458063 TAACGCTCAATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACTGATGAA
1 CAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * * *
18458128 ATGA------------GCGGGCACTACACCGACTAGAGAGAAGGGATGCACAAACCGTGGATCGA
66 ATGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
** * *
18458181 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGTCAT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* *
18458246 GTAAATTCACACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
196 GTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
** * * *
18458311 ATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTT
261 ATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTT
* * * * *
18458376 TGGCCCCAAAGTTGGTAGACATGATACTTGTATTTTTTTTGGCATGCAC-AAAAAATTCAGCTAA
326 TGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
18458440 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTTGAGACACTTTAAT
391 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
18458505 GGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTT
456 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
18458570 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA
521 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATATGCACACA
* * ** *
18458635 --CCCCGCGGCCCTCTTGATCGTCGGAACCCCAATGCCGCCGGTCCGGTTCTCCGGCGATGCTCT
586 CCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC-
* * * * * * **
18458698 TG-CGATGGTACCCCGATGAAGAAAAATGCGGCACCAGCACATTCTCGAGCCCAGCATGTGCTGT
650 CGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
* * *
18458762 CGCAACCCTTTGTTCGGTCTGATCTTATACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
715 CGCAACCC-TCG-TCAGTC-GATCTTAGACTGGGAATGAA-TCCGTATGCTTAGACTGGGAATGA
* * * * * * *
18458827 ACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGTGCTCAGCCGGCCATAGGGGCGTG
776 ACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * * * ** * *
18458892 ATGCGTAAGCTGGGGATCG-CTCAGGTCCTCCTCTGCATGCTGTCAATCCTACTGCCA
841 ATGCGCAAGCCGAGGATCGAC-CGGGTCCCCCTTTGTGTGCTGTCGATCCTGCTGCCA
* * * *
18458949 TAACCCTC-GATCCAGTCCAATCTTAGACTGGGAGTGAACTCCGTATGCCTAAGCCAACCGACGA
1 CAACCCTCAG-TCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * * * * * *
18459013 AACGAGTGGGTGGGCGGGC--ACAC-A-TC-GACCAAAGAGACGGGATGCACAAGCTGTGGATCG
65 AATGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *
18459073 ATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGGCAATGCCATTTTTATGGCT
130 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* * * *
18459138 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAGGTTTCATGGCAAGACGACACGTTTTC
195 TGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * * * *
18459203 TATTTTTCATGATTTTCGAAACTTTTTGCAGTTCGAGATTTTTTGAACTTTTTTCGAAATGAGTT
260 TATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTT
* * * * * *
18459268 TTGGCCCCAAACTTGGTGGACTTGATCCTTGTATTTTTTTTTGCATGCACAAAAATATTCAGCTA
325 TTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * *
18459333 AAAACTAGAAGTGTACTAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
** * * * * *
18459398 TGGCTACTATCAACAAACTTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGCTCTTGAGGTT
455 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * **
18459463 TGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCAC
520 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATATGCACAC
* * * * **
18459528 A--CCCCCCGGCCTCCCCGATCGTCGAAACCTCAATGCCGTCGGTCAGGTTCTCCAACGATGCTC
585 ACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC
* ** * *
18459591 CGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCACGTGCTAC
650 CGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
* * * * *
18459656 TGCAACCCTCGATCTGATCCGATCTTAGACTAGGAATGAACTCCGTTTGCTTAGACTGGGAATCA
715 CGCAACCCTCG-TCAG-T-CGATCTTAGACTGGGAATGAA-TCCGTATGCTTAGACTGGGAATGA
** * * * * *
18459721 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCAGGCGCTCAGCTGGCCGGAGGGGTGGG
776 ACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * * ** * *** * *
18459786 ATGCACACGTCGGGGATTGGTCGGGTCCCCCTCTACATGCTG-CCATTCTTGCTGCCA
841 ATGCGCAAGCCGAGGATCGACCGGGTCCCCCTTTGTGTGCTGTCGA-TCCTGCTGCCA
* * ** * * * *
18459843 CAATCCTCGGTCCAATCCAATTTTAGACTGGGAATCAACTTCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
18459908 ACT-A--------GCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCG
66 A-TGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
*
18459964 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
130 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* *
18460029 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTC
195 TGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * *
18460094 TATTTTTCAAGATTTTTAAAACTTTTTGGGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTT
260 TATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTT
* *
18460159 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCTA
325 TTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
18460224 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
18460289 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
455 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * * *
18460354 TGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
520 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATATGCACAC
* * * * * *
18460419 ACCCGCTCCGGCCACCCTGATCGTCGGAACCCCAATGCTGCCGATCAGG-T-T----C--T-CT-
585 ACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC
* * ** * *
18460474 -GACGATGGTGCCCTGACGAAGAAAAATATGGCAACAGCACATGCCCGAGCCCAGCATGTGCTGC
650 CGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
* * * *
18460538 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGAAATGAACTTCGTATGCTTAGACTGAGAATGA
715 CGCAACCCTC-GT-CAGT-CGATCTTAGACTGGGAATGAA-TCCGTATGCTTAGACTGGGAATGA
* * *
18460603 AATCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGGG
776 ACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * ** * *
18460668 ATGCGTAAGCCGGGGATCGGCCGGGT-CCCCTTCTGCATGCTGCCAATCCTGCTGCCA
841 ATGCGCAAGCCGAGGATCGACCGGGTCCCCCTT-TGTGTGCTGTCGATCCTGCTGCCA
* * * * *
18460725 CAACCCTCGGTCTGATCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACG-A
1 CAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * ** * * *
18460789 A--A-CGAGCAGGCGGGCGGGCACTACGCCGGTTAGAGATACGGGATGCACAAACCGTGGATCGA
66 ATGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *** *
18460851 GAGGGTGGTCA-TTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGTCATTTTTATGGCT
131 TAGGGTGGT-AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* * * * *
18460915 TGTAAATTCATATAATGGTCCCTTAAGCCTACACGTGAAGTTTCATTGCAAGACGACTTGTTTTC
195 TGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* ** * * * * *
18460980 TATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTAAAAATTTTTTCGAAAGGAGTT
260 TATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTT
** * *
18461045 TTTTCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAACAATTCAACTA
325 TTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * *
18461110 AAAACTCAAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAA
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
18461175 TGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
455 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
18461240 TCATGAGGGATAGGGGGCCAATATAAGGGCCATA-TACCAGCACCCATCACACATCATGTGTGCA
520 TGATGAGGGATAGGGGGCCAATATAAGGGCCA-AGTACCAGCACCCATCACACATCA--TATGCA
* *
18461304 CAC-CCCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATG
582 CACACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
** * *
18461368 CTCCGGTGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGC
647 CTCCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * *
18461433 -AGTCGTAAGCCTCGGTCTAGTTCGATCTTAGACTGGGAATCAACTTCGTATGCTTAGACTGGGA
712 TA-CCGCAACCCTC-GTC-AG-TCGATCTTAGACTGGGAATGAA-TCCGTATGCTTAGACTGGGA
* * ** *
18461497 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAACCAGAGGGA
772 ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * * ***
18461562 TGGGATGCACAAACCGAGGATCGACTGGGTCCCCCTTTGCGTGCTGTCAATCCAAATGCCA
837 CGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTTTGTGTGCTGTCGATCCTGCTGCCA
* * *
18461623 CAACCCTCGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCTACCGACGAA
1 CAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
*** * *
18461688 ATGAGCGGGCGGGCGGGGCGGGCACTACGCCATCCAAAGAGACGGGATGCACAAGCCGTGGATCG
66 ATGAGCGGGCGGGC-GGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
*
18461753 ATAGCGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
130 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* * * * * *
18461818 TGTAAATTCATACAATGGTCCTTTAAGACTTCACATGAAGTTTCATGGCAAGACGTCTGGTTTTC
195 TGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* ** * * *
18461883 TATTTTTCACGATTTTCAAAACTTCTTGCGGTTTGAGATTTTTTAGAATTTTTTTGGAAGGAGTT
260 TATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTT
* *
18461948 TTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTA
325 TTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
18462012 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAA
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
18462077 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTTAGGGGAGTGTGAGTTCTCGAGGT
455 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-GTGTGAGTTCTCGAGGT
* * * * *
18462141 TTGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCA
519 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATATGCACA
* * *
18462206 CA--CCCCCCGGCCCCCCCGATCATTGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCT
584 CACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT
* * * *
18462269 CCGACAATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCATATGCCCGAGCCCAGCATGTGCTG
649 CCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
* *
18462334 CTGCAA--C-C--C--TCGATC-----C---G---G--TCTG-A--CTTAGACTGGGAATGAACT
714 CCGCAACCCTCGTCAGTCGATCTTAGACTGGGAATGAATCCGTATGCTTAGACTGGGAATGAACT
* * * * * * *
18462376 CTGCATGCCTAAGTCAACCCACAAAATGAGCGTGTGGGTGCTCAGCCGGCTAGAGGGGCGGGATA
779 CCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * ** * * * *
18462441 CGCAA-CTCGGGGATAGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTACCG
844 CGCAAGC-CGAGGATCGACCGGGTCCCCCTTTGTGTGCTGTCGATCCTGCTGCCA
** * ** * *
18462495 CAACCCTCAGTCCGGTCCGATCTTAGATTGGGAATGAACTTTGAATGCCTAAGCCCACCGAC-AA
1 CAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
18462559 A--A-CGAGC---C-GGCGGGCACTACG-TCAGCCAGAGAGACGGGCTGCGCAAGCCGTGCATCG
66 ATGAGCGGGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
*
18462616 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC-TGCCAATGCCATTTTTATGGCT
130 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* *
18462680 TGTAAATTCAAACAATGGTCCCTGAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
195 TGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * *
18462745 TATTTTTCACT-ATTTTTGAAACTTTTTGCGATTCGAGATTTTTTTAAATTTTTTCGGAACGAGT
260 TATTTTTCA-TGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGT
*
18462809 TTTGGCCCCAAACTTGGTAGACGTGAT-CCTGGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
324 TTTGGCCCCAAACTTGGTAGACGTGATCCCT-GTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * * *
18462873 TAAAAACTTGAAGTGTTCAAGATTTTCTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTT
388 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
18462938 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTCCTCGAGG
453 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
18463003 TTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCATCACCCATCACACATCATATGCAC
518 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATATGCAC
* ** *
18463068 ACACCCTTCCCCCCGGCCCTCCCGATAATCGGAA-CCCATATGCCGCCGGTCAGGTTCTCCGGTG
583 ACA-CC--CCCCCCGGCCCCCCCGATCGTCGGAACCCCA-ATGCCGCCGGTCAGGTTCTCCGGCG
* * * * * *
18463132 ATGTTTCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGATCCTAGCCTG
644 ATGCTCCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* *
18463197 TACTGCCGCAA-CC-C-TC-G--G-TC-----C--GG--T---T-CG-AT-CTTAGACTGGGAAT
709 TGCTACCGCAACCCTCGTCAGTCGATCTTAGACTGGGAATGAATCCGTATGCTTAGACTGGGAAT
* * ** **
18463240 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAACCAGAGGGATG
774 GAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * ** * *
18463305 GGATGCACAAACCGAGGATCGACTGGGTCCCCCTTTGCATGCTGTCAATCCTACTGCCA
839 GGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTTTGTGTGCTGTCGATCCTGCTGCCA
* * *
18463364 CAACCCTCGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCTACCGACGAA
1 CAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
*** *
18463429 ATGAGCGGGCGGGCGGGCGGGCACTACGCCATCCAAAGAGACGGGATGCGCAAGCCGTGGATCGA
66 ATGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
18463494 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCTTTTTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
*
18463559 GTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCT
196 GTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
*
18463624 ATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAATGG-GTT
261 ATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAA-GGAGTT
* *
18463688 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAATTCAGCTA
325 TTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
18463753 AAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-TGTCCCCATTTCAGACACTTTAA
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
18463817 TGGCTACAGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
455 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * * *
18463882 TGATGAGGCATAGGGTAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTATGCACA
520 TGATGAGGGATAGGG-GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATATGCACA
* * * ** *
18463947 CA-CCCCCTCGG-GCCCTCGATCGTCGGAACCCCAATGCCGTTGGTCAGGTTCTCTGGCGATGCT
584 CACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT
** * * * *
18464010 CCGGTGATGGTCCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTG
649 CCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
18464075 CCGCAACCCTCGATCCAGTGCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
714 CCGCAACCCTCG-T-CAGT-CGATCTTAGACTGGGAATGAA-TCCGTATGCTTAGACTGGGAATG
* *
18464140 AACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGG
775 AACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * ** * *
18464205 GATGCGTAAGCTGGGGATCGGTCGGGTCCCCCTATGTGTGCTGTAGATCCTGCTGCCA
840 GATGCGCAAGCCGAGGATCGACCGGGTCCCCCTTTGTGTGCTGTCGATCCTGCTGCCA
* * * * * *
18464263 CAACCCTCAGTTCGGTCTAATCTTAGACTAGGAATAAACTCTGTATGCGTAAGCCAACTGACGAA
1 CAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
18464328 ACGAGCGGGCGGGCGGGCGGGCACTACG-TCGGCCAGAGAGACGGGATGTGGAAGCCGTGGATCG
66 ATGAGCGGGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
**
18464392 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATAACAATGCCATTTTTATGGCT
130 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
*
18464457 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
195 TGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* *
18464522 TATTTTTCAAGATTTTTTAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTTGGAAGGA-T
260 TATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTTGGAAGGAGT
* *
18464585 TTCTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAATAATTCAGC
324 TT-TGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
18464650 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
388 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
18464715 AATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
453 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * *
18464780 TTTGATGAGGGATTGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC
518 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATATGCAC
* *
18464845 ACA-CCACCCCGGCCCCCCCGATCGTCGGAACCCCTATGCCGCCGGTCAGGTTCTCCGGCGATGC
583 ACACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
* ** * ** *
18464909 TCTGGTGATAGTGCCCTGGTGAAGAAAAATGCGGCACCAGCACATTCCCGAGCCCAGCATGTGCT
648 TCCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
18464974 ACCGCAACCCTCAGTCTAGTTCGATCTTAGACTGGGAATGAAATCCGTATGCTTAGACTGGGAAT
713 ACCGCAACCCTC-GTC-AG-TCGATCTTAGACTGGGAATG-AATCCGTATGCTTAGACTGGGAAT
*** * * *
18465039 GAACTCCGTATGCCTAAGTCAACCCATGGAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGAGTG
774 GAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * *
18465104 GGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTTTGTGTGTTGTCGATCTTGCTGTCG
839 GGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTTTGTGTGCTGTCGATCCTGCTGCCA
* * * * * * *
18465163 CAACCCAT-AATCTGGTCTGATCTTAGATTGGGAATGAACACCGTATTCCTAAGCCAATCGACGA
1 CAACCC-TCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
18465227 AATGAGCGGGCGGGCGGGCAGGTGGGTACTACGCTGGCGAGAGAAACGGGATGCGTAAGCCGTGG
65 AATGAGCGGGCGGGCGGGC----GGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
18465292 ATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
126 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
*
18465357 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA-TCCG
191 GGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT-CG
* * * * * * *
18465421 TTTTGTATTTTTTATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTTAAATTTTTTTAGTAG
255 TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAG
* * *
18465486 GATTTTTGGCCCCAAACTTGGTAGATGTGATCCCTGTATTTATGTTGGCATGCACAAAAAAATTC
320 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
18465551 AGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCACACAC
385 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
18465616 TTTAATGGCTACTGGTAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
450 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
18465681 AGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
515 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATATG
* * *
18465746 CGCACACCCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGA
580 CACACACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
* * ** * * *
18465811 TGCTCCGACGATGGTGCCCTGGTGAAG-AATATTCGGCACCAGCACATGCCCGAGCACAGCATGT
645 TGCTCCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
18465875 GCTACCGCAACCCT
710 GCTACCGCAACCCT
18465889 GTGCCAATGA
Statistics
Matches: 9182, Mismatches: 1116, Indels: 407
0.86 0.10 0.04
Matches are distributed among these distances:
861 2 0.00
862 176 0.02
863 269 0.03
864 8 0.00
865 1 0.00
867 4 0.00
868 120 0.01
869 168 0.02
870 5 0.00
871 4 0.00
872 341 0.04
873 104 0.01
874 18 0.00
875 5 0.00
876 462 0.05
877 298 0.03
878 286 0.03
879 6 0.00
881 10 0.00
882 260 0.03
883 8 0.00
884 3 0.00
885 3 0.00
886 779 0.08
887 48 0.01
888 207 0.02
889 269 0.03
890 4 0.00
891 447 0.05
892 2 0.00
893 303 0.03
894 497 0.05
895 56 0.01
896 10 0.00
897 7 0.00
898 387 0.04
899 1039 0.11
900 544 0.06
901 19 0.00
902 188 0.02
903 873 0.10
904 531 0.06
905 410 0.04
906 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ATGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
GTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATATGCACACA
CCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCC
GACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
GCAACCCTCGTCAGTCGATCTTAGACTGGGAATGAATCCGTATGCTTAGACTGGGAATGAACTCC
GTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
CAAGCCGAGGATCGACCGGGTCCCCCTTTGTGTGCTGTCGATCCTGCTGCCA
Found at i:18466356 original size:26 final size:26
Alignment explanation
Indices: 18466327--18466379 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18466317 CCGGTCCGAT
18466327 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
18466353 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
18466379 C
1 C
18466380 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:18467253 original size:26 final size:25
Alignment explanation
Indices: 18467216--18467275 Score: 86
Period size: 26 Copynumber: 2.4 Consensus size: 25
18467206 CATCGGACTG
*
18467216 CTCTGAT-CTTAGACTGGGAATGAA
1 CTCTGATGCTTAGACTAGGAATGAA
18467240 CTCTGCATGCTTAGACTAGGAATGAA
1 CTCTG-ATGCTTAGACTAGGAATGAA
18467266 CTCTGTATGC
1 CTCTG-ATGC
18467276 CAATGTCAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 25 0.78
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (25 bp):
CTCTGATGCTTAGACTAGGAATGAA
Found at i:18468479 original size:150 final size:151
Alignment explanation
Indices: 18468190--18468481 Score: 390
Period size: 150 Copynumber: 1.9 Consensus size: 151
18468180 CGGCCAGAGG
* * *
18468190 GGCGGGATGCGCAAGTCGGGGATCGTTCGGGTCCCCCTCTGCGTGCTATCGATCCTACTACCGCA
1 GGCGGGATGCGCAAGTCAGGGATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTACTACCACA
** * *
18468255 ACCCTCTGTCCGGTCCGATCTTAGACTGGGATTGAACTTCGTATGCCTAAGCCAACCGACCAAAC
66 ACCCTCTGTCCGGTCCGATCTTAGACTCAGAATGAACTCCGTATGCCTAAGCCAACCGACCAAAC
18468320 AAGCGGGCGGGCGGGGAGGCA
131 AAGCGGGCGGGCGGGGAGGCA
* * * *
18468341 GGCGGGATGTGCAAG-CAGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACA
1 GGCGGGATGCGCAAGTCAGGGATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTACTACCACA
** * * * *
18468405 ACCCTC-GATTTGGTCTGATCTTAGACTCAGAATGAACTCCGTATGCCTAAGCGATCCGACGAAA
66 ACCCTCTG-TCCGGTCCGATCTTAGACTCAGAATGAACTCCGTATGCCTAAGCCAACCGACCAAA
**
18468469 TGAGCGGGCGGGC
130 CAAGCGGGCGGGC
18468482 ACTACGCCGG
Statistics
Matches: 121, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
149 1 0.01
150 106 0.88
151 14 0.12
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (151 bp):
GGCGGGATGCGCAAGTCAGGGATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTACTACCACA
ACCCTCTGTCCGGTCCGATCTTAGACTCAGAATGAACTCCGTATGCCTAAGCCAACCGACCAAAC
AAGCGGGCGGGCGGGGAGGCA
Found at i:18469164 original size:26 final size:26
Alignment explanation
Indices: 18469128--18469179 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18469118 CTGGTCTGAT
* *
18469128 CTTAGATTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18469154 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18469180 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18469349 original size:26 final size:26
Alignment explanation
Indices: 18469313--18469365 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18469303 CTCCTCTAAT
*
18469313 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18469339 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18469365 C
1 C
18469366 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18470072 original size:367 final size:367
Alignment explanation
Indices: 18469339--18470224 Score: 1177
Period size: 367 Copynumber: 2.4 Consensus size: 367
18469329 ACTTCGTATG
* *
18469339 CTTATACTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAA-AGAGCAGGCAGATGGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACA-AGCA-G--GA-GGGCGG
* * * *
18469403 GCGGGCACTACGTTGGCCAGAGAGACAGGATGCCCAAGCCATGGATCGATAGGGTGGTAGGTGTG
61 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGG
* **
18469468 TTTAGGCACATCTTCATATTTTTGGGGCACCAGCACATGCCCGAGCCTAGCATGTGCAACCGCAA
126 TTTAGGCACATCTTCATATTTCTACGGCACCAGCACATGCCCGAGCCTAGCATGTGCAACCGCAA
* * ** * *
18469533 CCTTCGATCTGGTCTGATCTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACGAATCG
191 CCCTCGATCTGATCTGATCTTAGACCAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * ** *
18469598 AGCGTACGGACGCTCAGCTAGCCAGAAGGGCGGGATGCGTAAGCTGACGATCGATTGGGTCCCTT
256 AGCGTACGGACGCTCAGCCAGCAAGAAGGGCGGGATGCGCAAGCCGACGATCGACCGGGTCCCCT
* * * *
18469663 TCTGCATGCTTCCGATCCTGCTGCCCCAACCCTCATTCTGGTCCGAT
321 TCTGCATGCTTCCAATCCTGCTACCCCAACCCTCAGTCTGGTCCAAT
*
18469710 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGGAGGGCGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGGAGGGCGGGCGGG
*
18469775 CACTACGTCGGCCAGAAAGACGGGATGCGCAAGCCATGGATAC-ATAGGGTGGTAGGTGGGTTTA
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGAT-CGATAGGGTGGTAGGTGGGTTTA
* * * ** *
18469839 GGCACAACTTCATATTTCTACGGCACCAGCACATGCCTGAGCCTAGCTTGTGCTGCCGTAACCCT
130 GGCACATCTTCATATTTCTACGGCACCAGCACATGCCCGAGCCTAGCATGTGCAACCGCAACCCT
* *
18469904 CGGTCTGATCTGATCTTAGACCAGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGCG
195 CGATCTGATCTGATCTTAGACCAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * ** *
18469969 TGCGGGCGCTCAGCCAGTAAGAAGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCTTCTT
260 TACGGACGCTCAGCCAGCAAGAAGGGCGGGATGCGCAAGCCGACGATCGACCGGGTCCCCTTCTG
* * *
18470034 CGTG-TTGCCAATCCTGCTACCGCAACCCTCAGTCTGGTCTAAT
325 CATGCTT-CCAATCCTGCTACCCCAACCCTCAGTCTGGTCCAAT
* * * * *
18470077 CTTAGACTGGGAATCAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCA-GGCGTGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGG-AGGGCGGGCGG
* * * *
18470141 GCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTA
65 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTA
*
18470206 CGCACATCTTCATATTTCT
130 GGCACATCTTCATATTTCT
18470225 GCATGCCAAT
Statistics
Matches: 452, Mismatches: 58, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
366 3 0.01
367 396 0.88
368 4 0.01
370 1 0.00
371 47 0.10
372 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.21
Consensus pattern (367 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGGAGGGCGGGCGGG
CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTACGGCACCAGCACATGCCCGAGCCTAGCATGTGCAACCGCAACCCTC
GATCTGATCTGATCTTAGACCAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
ACGGACGCTCAGCCAGCAAGAAGGGCGGGATGCGCAAGCCGACGATCGACCGGGTCCCCTTCTGC
ATGCTTCCAATCCTGCTACCCCAACCCTCAGTCTGGTCCAAT
Found at i:18471004 original size:26 final size:26
Alignment explanation
Indices: 18470975--18471027 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18470965 CTCGTCTGAT
*
18470975 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18471001 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18471027 C
1 C
18471028 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18471817 original size:366 final size:368
Alignment explanation
Indices: 18471001--18471885 Score: 1161
Period size: 366 Copynumber: 2.4 Consensus size: 368
18470991 ACTTCGTATG
* * *
18471001 CTTATACTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAAAGAGCAGGCAGATGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGC--A-GGGCGGG
* * *
18471066 CGGGCACTACGTTGGCCAGAGAGACAGGATGC-CTAAGCCATGGATCGATAGGGTGGTAGGTGTG
63 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGC-AAGCCATGGATCGATAGGGTGGTAGGTGGG
* * *
18471130 TTTAGGCACATCTTCATATTTTTAGGGCACCAGCACATGCCCGAGCCTAGCATGTGCAACCGCAA
127 TTTAGGCACATCTTCATATTTCTACGGCACCAACACATGCCCGAGCCTAGCATGTGCAACCGCAA
* * ** * * *
18471195 CCTTCGATCCGGTCTGATCTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACGAATCG
192 CCCTCGATCCGATCTGATCTTAGACTCAGAATGAACTCCGTATGCCTAAGACAACCCACGAAACG
* * * * *** *
18471260 AGCGTGCGGACGCTCAGCTAGCCAGAGGGGCGAGATGCGTAAGCCGATGATCGGTTGGGTCCCTT
257 AGCGTGCGGACGCTCAGCCAGCAAGAGGGGCGAGATGCGCAAGCCGAGGATCGACCGGGTCCCCT
* * *
18471325 TCTGTGTGCTTTCGATCCTGCTGCCCCAACCCTCAGTCTGGACCGAT
322 TCTGTGTGCTTCCAATCCTGCTACCCCAACCCTCAGTCTGGACCGAT
* * *
18471372 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGTAGG-AGGGCGGGTGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGGCGGGCGG
18471436 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTA
66 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTA
* * * **
18471501 GGCACAACTTCATATTTCTACGGCACCAACACATGCTCGAGCCTAGCTTGTGCTGCCGCAACCCT
131 GGCACATCTTCATATTTCTACGGCACCAACACATGCCCGAGCCTAGCATGTGCAACCGCAACCCT
* * * *
18471566 CGGTCCGATCTGATCTTAGAC-CAGAATGAATTCTGTATGCCTAAGACAACTCACGAAACGAGCG
196 CGATCCGATCTGATCTTAGACTCAGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCG
* * * * * *
18471630 TGTGGGCGCTCAGCCAGTAAGAGGGGTGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCTTCT-
261 TGCGGACGCTCAGCCAGCAAGAGGGGCGAGATGCGCAAGCCGAGGATCGACCGGGTCCCCTTCTG
* * * *
18471694 TCGTG-TTGCCAATCCTGCTATCGCAACCCTCAGTCTGGTCTGAT
326 T-GTGCTT-CCAATCCTGCTACCCCAACCCTCAGTCTGGACCGAT
* * * *
18471738 CTTAGACTGGGAATCAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCA-GGCGTGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGGCGGGCGG
* * * *
18471802 GCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTA
66 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTA
18471867 GGCACATCTTCATATTTCT
131 GGCACATCTTCATATTTCT
18471886 GCATGCCAAT
Statistics
Matches: 449, Mismatches: 61, Indels: 13
0.86 0.12 0.02
Matches are distributed among these distances:
365 3 0.01
366 251 0.56
367 145 0.32
368 2 0.00
371 48 0.11
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.21
Consensus pattern (368 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGGCGGGCGG
GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTACGGCACCAACACATGCCCGAGCCTAGCATGTGCAACCGCAACCCT
CGATCCGATCTGATCTTAGACTCAGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCG
TGCGGACGCTCAGCCAGCAAGAGGGGCGAGATGCGCAAGCCGAGGATCGACCGGGTCCCCTTCTG
TGTGCTTCCAATCCTGCTACCCCAACCCTCAGTCTGGACCGAT
Found at i:18472503 original size:26 final size:26
Alignment explanation
Indices: 18472446--18472504 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
18472436 CTCGGTCCGG
18472446 TCTG-ATG-TTAGACTGGGAATAAAC
1 TCTGTATGCTTAGACTGGGAATAAAC
** *
18472470 TCCATATGCTTAGACTGGGAATGAAC
1 TCTGTATGCTTAGACTGGGAATAAAC
18472496 TCTGTATGC
1 TCTGTATGC
18472505 CTAGGTCAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
24 2 0.07
25 3 0.11
26 23 0.82
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.31
Consensus pattern (26 bp):
TCTGTATGCTTAGACTGGGAATAAAC
Found at i:18473358 original size:899 final size:898
Alignment explanation
Indices: 18471589--18476210 Score: 5799
Period size: 899 Copynumber: 5.2 Consensus size: 898
18471579 TCTTAGACCA
* * * * * * **
18471589 GAATGAATTCTGTATGCCTAAGACAACTCACGAAACGAGCGTGTGGGCGCTCAGCCAGTAAGAGG
1 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * ** * * *
18471654 GGTGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCTTCT-TCGTGTTGCCAATCCTGCTATCGC
66 GGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGT-GTGCTATCGATCCTGCTACCAC
* * * *
18471718 AACCCTCAGTCTGGTCTGATCTTAGACTGGGAATCAACTCCGTATGCCTAAGCCAACCGATGAAA
130 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * *
18471783 CGAGCGGGCAGGCGTGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGAT
195 CGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGAT
* *
18471848 AGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGGCTTG
260 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* *
18471913 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTTTA
325 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
** * * *
18471978 TTTTTCACGATTTTCAAAACTTTTTACAGTTCAGGATTTTTTAAAATATTTTCAGAAAGA-TTTT
390 TTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAAGAGTTTT
* ** * * * *
18472042 TGACCTGAAACTTGGTAGACGTGATCCTTGTATTCTTGTTGGCCTGCACAAAAAACTTCAGCTAA
455 AG-CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
18472107 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
519 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
18472172 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTCGAGGTTT
584 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * * *
18472237 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCACCGCACATGATGTGCACACA
649 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* ** *
18472302 CCCGCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCAATGATGCTCCG
714 CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCG
* * * * *
18472366 ATGATGGTGCCTCGACAAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAACATGTGCTACCG
779 -CGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * *
18472431 CAACCCTCGGTCCGGTCTGATGTTAGACTGGGAATAAACTCCATATGCTTAGACTGG
843 CAACCCTCGGTCCGGTC-CATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * *
18472488 GAATGAACTCTGTATGCCTAGGTCAACCAATGAAACAAGCGTGCGGGCACTGAGCCGGCCAGAGG
1 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * **
18472553 GGCGGGATGCGGAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCCATCGATCATGCTTTCACA
66 GGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTATCGATCCTGCTACCACA
** * * *
18472618 ACCCTCGGTCTGGTCTAATCTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCGACGAAAT
131 ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* *
18472683 GAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAAACGGGATGCGTAAGCTGTGGATCGATA
196 GAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATA
* ** *
18472748 GAGTGGTAGGTGGGTTTAGGTGCATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGT
261 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* *
18472813 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTGATGGCAAGACGACTCGTTTTCTAT
326 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * *
18472878 TTTTCACGATTTTTGAAACTTTTTACGGTTTAGGATTTTTTAAAATTTTTTTGGAATGAGTTTTA
391 TTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTA
* *
18472943 GCCCCAACCTTGGTAGACGTGATCCTTTTATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
456 GCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
18473008 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
520 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * * * *
18473073 CCAACTGGCAGCAAACCTGTAAGATCTCAAATGCTCTTTAAGAGGGTGTGAGTTATCGAGGTTTG
585 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
*
18473138 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAC
650 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * *
18473203 CCCCCCGGCCCCCCCGATCGTCGAAATCCCAATGCCGCCGGTCAGGTTCTCTGGTGATGCTCCAG
715 CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCC-G
** *
18473268 CGATGGTGCCTCGGTGAAGAAAAATGCGGCACCAGCATATGCCTC-AGCCCAGCATGTGCTGCCG
779 CGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCC-CGAGCCCAGCATGTGCTGCCG
* * * *
18473332 CAA-CCTCGGTCCAGTCCATCTTAGACTGCGAATGAACTCCGTATGGTTAGACAGG
843 CAACCCTCGGTCCGGTCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
** * * * *
18473387 GAATGAACTCCATATGCCTAAGTTAACCCACGAAACAAGCGTGAGGGAGCTCAGCCGGCTAGCA-
1 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAG-AG
* * ** * * * *
18473451 GGGTGGGATACGCAAGTTGGGGATCGA-CTGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCT
65 GGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGTGTGCTATCGATCCTGCTACCA
* * * * *
18473515 GAACCCTTGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAA
129 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * **
18473580 ACGAGC-GAGCGGGCGGTCGGGCGGGCACTACGCCGGACAGAGAGATGGGATGCGCAAGCAATGG
194 ACGAGCGGA-C--G-GG-CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGG
* * *
18473644 ATCGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTACTGCCTGCCAATGCCATTTTTAT
254 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
*
18473709 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGT
319 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
18473774 TTTATATTTTTCACAATTTTTGAAACTTTTTACGGTTAAAGATTTTTTAAAATTTTTTCGGAAAG
384 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAAG
* **
18473839 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAAAAC
449 AGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-AAAAAAATTC
* *
18473904 AGCTAAAAACTCAGGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
513 AGCTAAAAACTC-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * * *
18473969 CTTTAATGGCTACAGGCAGGAAACCTATAAAATCTCAAATGCTTTTTAAGGGGGTTTGAGTTCTC
577 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
18474034 GAGGTTTGATGAGGGATAGGGGGCCAATACAAGGG-CAAGTACCAGCACCCATCGCACATCATGT
642 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * ** * *
18474098 GCGCACACCCCCCCGACCCCTCCGATCACCGGAACGCCAATGCCGCCGGTCAGGTTCTCCGACGA
707 GCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGA
** * ** *
18474163 TGCT---C-----TG----G-CGAAGAAAAATGCTACAGCAGCACATGCCCGAGCGTAGCAAGTG
772 TGCTCCGCGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* **
18474215 CTGTCATAACCCTCGGTCCGGTCCGATCTTAGACT-GG---GAA------A-G---A-AC---
837 CTGCCGCAACCCTCGGTCCGGTCC-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
** * * *
18474260 ---T----TC-GTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGTGCTCAACCGGCCAGAGG
1 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * *
18474317 GGCGGGATGCGCAAGCC------C---C-GATCCCTCTCTGTGTGCTGTTGATCCTGCTA-CAGC
66 GGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTATCGATCCTGCTACCA-C
*
18474371 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
130 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
18474436 CGAGCGGGCGGGCGGGCGGACAGCCACTACGTCGGCCAGAGAGGCGGGATGCGTAAGCCGTGGAT
195 CGAGCGGACGGGCGGGCGG---G-CACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGAT
* *
18474501 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTAAGCCAATGCCATTTTTATGG
256 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* *
18474566 CATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTT
321 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* *
18474631 TCTATTTTTCACGATTTTTGAAACTTTTT-CGGTTCGGGATTTTTTAAAACTTTTTC-GAAATGA
386 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAA-GA
* * ** * *
18474694 TTTTTAACCCCAAACTTGGTAGGTGTGATCCTTGTATATTTTTTGGCATGCATAAAAAAATTCAG
450 GTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
*
18474759 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCACCATTTCAGACACTT
515 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
18474823 TAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
580 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
18474888 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
645 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * *
18474953 CACACACCCCCTGGCCCCCTCGATCGTTGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATG
710 CACAC-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATG
* * * *
18475018 CTCCGGCGATGGAGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATGTG-
774 CTCC-GCGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * *
18475082 TGGCTGCAACCCTCAGTTCGGTCTGATCTTAGA-TGGGGAATGAACTCCGTATGCTTAGACTGG
838 T-GCCGCAACCCTCGGTCCGGTC-CATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACTGG
* * * * * *
18475145 GAATGAACT-TCGTACGCCTAAGTAAACCCACGAAACGAGCGTGCTGGCGCTCAACCGGCCAGTG
1 GAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * *
18475209 GGGCGGGATGTGCAAGTCGGGGATCTG-TCGGGT-CCCC-C----T-CTA-CG----TGCTGCCA
65 GGGCGGGATGCGCAAGCCGGGGATC-GATCGGGTCCCCCTCTGTGTGCTATCGATCCTGCTACCA
* * * * *
18475261 TAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAATCGATGAA
129 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * * * * * *
18475326 ACAAGC-GAGCGAGCGGGCGGGCACCACGTCAGCCAGAGAGACGGAATGCGCAAGTCATGGACCA
194 ACGAGCGGA-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCG
*
18475390 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT--ATGTTCCATTGCCATTTTTATGG
258 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG--CCAATGCCATTTTTATGG
*
18475453 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACGCGTTT
321 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * * *
18475518 TCTATTTTTCACGA-TTTTCAAACATTTTTGCGATTCGGGATTTTTTAAAATTTTTTTGGAAGGA
386 TCTATTTTTCACGATTTTTGAAAC-TTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAAGA
* *
18475582 GTTTT-GCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAAATTCA
450 GTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC-ACAAAAAAATTCA
* *
18475646 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACGATTTGAAAAAAGTGTCCCCATTTTAGACACT
514 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * * *
18475711 TTAGTGGCTACTGGCAGGAAACTTGTAAAATCTCAAATGCTTTTTAAGGGGGTTTGAGTTCTCGA
579 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
18475776 GGTTTGATGAGGGATAGGGGGACAATATAAAGG-CAAGTACCAGCACCCATCGCACATCATGTTG
644 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG-TG
* * *
18475840 -GCACACCCCCTCGG-CCCCCCGATCGTCGGAACCCCAATGCGGTCGGTCAGGTTCTCCGATGAT
708 CGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGAT
* * *
18475903 GCT-C-CGA-------T----GAAGAAAAATGTGGCATCAGCACATGCCCGAGCCTAGCATGTGC
773 GCTCCGCGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* ** *
18475955 TGCCTCAACCCTCGGTGTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGG
838 TGCCGCAACCCTCGGTCCGGTCC-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
18476017 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAACGTGCGGGCGCTCAGCCGGCCATAGG
1 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * *
18476082 GGCAGGATGCGCAAGCCGGGGATCGATCGTGTCCCCCTCTGTGTGCTGTCGATCTTGCTACCGCA
66 GGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTATCGATCCTGCTACCACA
* * *
18476147 ACCCTTGGTGC-AGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAA
131 ACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
18476211 TGAGTTTTTC
Statistics
Matches: 3221, Mismatches: 392, Indels: 235
0.84 0.10 0.06
Matches are distributed among these distances:
851 121 0.04
852 66 0.02
853 77 0.02
854 73 0.02
855 275 0.09
856 1 0.00
857 2 0.00
859 1 0.00
862 1 0.00
864 1 0.00
865 57 0.02
866 5 0.00
867 59 0.02
868 2 0.00
870 1 0.00
871 4 0.00
872 169 0.05
873 6 0.00
874 1 0.00
876 2 0.00
877 2 0.00
878 2 0.00
879 2 0.00
880 3 0.00
881 2 0.00
882 2 0.00
883 3 0.00
884 62 0.02
885 4 0.00
886 54 0.02
887 221 0.07
888 117 0.04
889 158 0.05
890 16 0.00
891 88 0.03
892 3 0.00
893 62 0.02
894 2 0.00
895 1 0.00
896 2 0.00
897 1 0.00
898 3 0.00
899 613 0.19
900 241 0.07
901 106 0.03
902 25 0.01
903 363 0.11
904 139 0.04
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGG
GGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTATCGATCCTGCTACCACA
ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
GAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATA
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTA
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGCG
ATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
CCCTCGGTCCGGTCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
Found at i:18473390 original size:26 final size:26
Alignment explanation
Indices: 18473352--18473402 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18473342 CCAGTCCATC
* *
18473352 TTAGACTGCGAATGAACTCCGTATGG
1 TTAGACAGCGAATGAACTCCATATGG
*
18473378 TTAGACAGGGAATGAACTCCATATG
1 TTAGACAGCGAATGAACTCCATATG
18473403 CCTAAGTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (26 bp):
TTAGACAGCGAATGAACTCCATATGG
Found at i:18475146 original size:26 final size:26
Alignment explanation
Indices: 18475109--18475158 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
18475099 TCGGTCTGAT
18475109 CTTAGATGGGGAATGAACTCCGTATG
1 CTTAGATGGGGAATGAACTCCGTATG
*
18475135 CTTAGACT-GGGAATGAACTTCGTA
1 CTTAGA-TGGGGAATGAACTCCGTA
18475159 CGCCTAAGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGATGGGGAATGAACTCCGTATG
Found at i:18475594 original size:887 final size:874
Alignment explanation
Indices: 18474371--18476121 Score: 2484
Period size: 887 Copynumber: 2.0 Consensus size: 874
18474361 CTGCTACAGC
*
18474371 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
1 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
* * * * * * * * * *
18474436 CGAGCGGGCGGGCGGGCGGACAGCCACTACGTCGGCCAGAGAGGCGGGATGCGTAAGCCGTGGAT
66 CAAGCGAGCGAGCGGGCGG--AGCCACCACGTCAGCCAGAGAGACGGAATGCGCAAGCCATGGAC
* *
18474501 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTAAGCCAATGCCATTTTTATGG
129 CAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATAAGCCAATGCCATTTTTATGG
* *
18474566 CATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTT
194 CATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACGCGTTT
* * * *
18474631 TCTATTTTTCACGATTTTTGAAACTTTTTCGGTTCGGGATTTTTTAAAACTTTTTCGAAATGATT
259 TCTATTTTTCACGATTTTTCAAACTTTTTCGATTCGGGATTTTTTAAAACTTTTTCGAAAGGAGT
* ** *
18474696 TTTAACCCCAAACTTGGTAGGTGTGATCCTTGTATATTTTTTGGCATGC-ATAAAAAAATTCAGC
324 TTTAACCCCAAACCTGGTAGACGTGATCCTTGTATATTTTTTGGCATGCAAAAAAAAAATTCAGC
18474760 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCACCATTTCAGACACTTT
389 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTT
*
18474824 AATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
454 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
18474889 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG-TGCG
519 TTTGATGAGGGATAGGGGGACAATATAAAGG-CAAGTACCAGCACCCATCGCACATCATGTTG-G
*
18474953 CACACACCCC-CTGGCCCCCTCGATCGTTGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGAT
582 CACAC-CCCCTC-GGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGAT
18475017 GCTCCGGCGATGGAGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATGTG
644 GCT-C--CGAT-----------GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATGTG
* *
18475082 -TGGCTGCAACCCTCAGT-TCGGTCTGATCTTAGA-TGGGGAATGAACTCCGTATGCTTAGACTG
695 CTGCCT-CAACCCTCAGTGT-GGTCCGATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACTG
* * * *
18475144 GGAATGAACTTCGTACGCCTAAGTAAACCCACGAAACGAGCGTGCTGGCGCTCAACCGGCCAGT-
757 GGAATGAACTCCGTACGCCTAAGTAAACCCACGAAACAAACGTGCGGGCGCTCAACCGGCCA-TA
* * *
18475208 GGGGCGGGATGTGCAAGTCGGGGATCTG-TCGGGTCCCCCTCTACGTGCTGCCAT
821 GGGGCAGGATGCGCAAGCCGGGGATC-GATCGGGTCCCCCTCTACGTGCTGCCAT
* * **
18475262 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAATCGATGAAA
1 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
*
18475327 CAAGCGAGCGAGCGGGCGG-G-CACCACGTCAGCCAGAGAGACGGAATGCGCAAGTCATGGACCA
66 CAAGCGAGCGAGCGGGCGGAGCCACCACGTCAGCCAGAGAGACGGAATGCGCAAGCCATGGACCA
*** * *
18475390 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTTCCATTGCCATTTTTATGGCT
131 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATAAGCCAATGCCATTTTTATGGCA
18475455 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACGCGTTTTC
196 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACGCGTTTTC
* * *
18475520 TATTTTTCACGA-TTTTCAAACATTTTTGCGATTCGGGATTTTTTAAAATTTTTTTGGAAGGAGT
261 TATTTTTCACGATTTTTCAAAC-TTTTT-CGATTCGGGATTTTTTAAAACTTTTTCGAAAGGAGT
* *
18475584 TTT-GCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAAATTCAGC
324 TTTAACCCCAAACCTGGTAGACGTGATCCTTGTATATTTTTTGGCATGCAAAAAAAAAATTCAGC
* * *
18475648 TAAAAACTCGAAGTGTACAAGATTTTGTGACGATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
389 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTT
* * * * *
18475713 AGTGGCTACTGGCAGGAAACTTGTAAAATCTCAAATGCTTTTTAAGGGGGTTTGAGTTCTCGAGG
454 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
18475778 TTTGATGAGGGATAGGGGGACAATATAAAGGCAAGTACCAGCACCCATCGCACATCATGTTGGCA
519 TTTGATGAGGGATAGGGGGACAATATAAAGGCAAGTACCAGCACCCATCGCACATCATGTTGGCA
* * * *
18475843 CACCCCCTCGGCCCCCCGATCGTCGGAACCCCAATGCGGTCGGTCAGGTTCTCCGATGATGCTCC
584 CACCCCCTCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCC
** * * * *
18475908 GATGAAGAAAAATGTGGCATCAGCACATGCCCGAGCCTAGCATGTGCTGCCTCAACCCTCGGTGT
649 GATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCTCAACCCTCAGTGT
* *
18475973 GGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
714 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTACGCCTAA
* * *
18476038 GTCAACCCACGAAATAAACGTGCGGGCGCTCAGCCGGCCATAGGGGCAGGATGCGCAAGCCGGGG
779 GTAAACCCACGAAACAAACGTGCGGGCGCTCAACCGGCCATAGGGGCAGGATGCGCAAGCCGGGG
*
18476103 ATCGATCGTGTCCCCCTCT
844 ATCGATCGGGTCCCCCTCT
18476122 GTGTGCTGTC
Statistics
Matches: 774, Mismatches: 75, Indels: 41
0.87 0.08 0.05
Matches are distributed among these distances:
871 2 0.00
872 177 0.23
873 6 0.01
883 4 0.01
885 1 0.00
886 50 0.06
887 224 0.29
888 119 0.15
889 115 0.15
891 76 0.10
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (874 bp):
AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
CAAGCGAGCGAGCGGGCGGAGCCACCACGTCAGCCAGAGAGACGGAATGCGCAAGCCATGGACCA
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATAAGCCAATGCCATTTTTATGGCA
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACGCGTTTTC
TATTTTTCACGATTTTTCAAACTTTTTCGATTCGGGATTTTTTAAAACTTTTTCGAAAGGAGTTT
TAACCCCAAACCTGGTAGACGTGATCCTTGTATATTTTTTGGCATGCAAAAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGACAATATAAAGGCAAGTACCAGCACCCATCGCACATCATGTTGGCACA
CCCCCTCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCGA
TGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCTCAACCCTCAGTGTGG
TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGT
AAACCCACGAAACAAACGTGCGGGCGCTCAACCGGCCATAGGGGCAGGATGCGCAAGCCGGGGAT
CGATCGGGTCCCCCTCTACGTGCTGCCAT
Found at i:18476017 original size:26 final size:26
Alignment explanation
Indices: 18475981--18476033 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18475971 GTGGTCCGAT
*
18475981 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18476007 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18476033 C
1 C
18476034 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18476692 original size:26 final size:26
Alignment explanation
Indices: 18476655--18476707 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18476645 TCGGTCTGAT
18476655 CTTAGATGGGGAATGAACTCCGTATG
1 CTTAGATGGGGAATGAACTCCGTATG
*
18476681 CTTAGACT-GGGAATGAACTTCGTATG
1 CTTAGA-TGGGGAATGAACTCCGTATG
18476707 C
1 C
18476708 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGATGGGGAATGAACTCCGTATG
Found at i:18478193 original size:863 final size:850
Alignment explanation
Indices: 18476215--18478420 Score: 2804
Period size: 863 Copynumber: 2.5 Consensus size: 850
18476205 ACGAAATGAG
* * * * * * **
18476215 TTTTTCAAAATTTTTTCGTAAGGGGTTTTGGCCCTAAACTTGGTAGATGTGATCCTCATATTTTT
1 TTTTT-AAAATTTTGTCGAAAGGAGTTTTGGCCCCAAACTTGGTACACGTGATCCTTGTATTTTT
* *
18476280 GTTGGCATGGA-AAAACACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAA
65 GTTGGCATGCACAAAACA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
*
18476344 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
129 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCT
*
18476409 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
194 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCAC
* * *
18476474 CAGCACCCATCGCACATCATGTGCGCACACACCCCCTGGCCCCCTCGATCGTTGGAACCCCAATG
259 CAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG
* *
18476539 CCGCCGATCAGGTTCTCCGACGATGCTCCGGCGATGGAGCCCCGACGAAGAAAAATACGGCACCA
323 TCGCCGGTCAGGTTCTCCGACGA---T---G-G-T---GCCCCGACGAAGAAAAATACGGCACCA
* *
18476604 GCACATGCCCGAGCCCAACATGTG-TGGCTGCAACCCTCAGTTCGGTCTGATCTTAGATGGGGAA
377 GCACATGCCCGAGCCCAGCATGTGCT-GCCGCAA-CC-C---TCGGTC----C---------G--
*
18476668 TGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTAAACCCACGAAACGAGCGT
421 -G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGT
* * * * * *
18476733 GCTGGCGCTCAACCGGCCAGTGGGGCGGGATGTGCAAGTCGGGGATCTGTCGGGTCCCCCTCTGC
480 GCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGGTCAGGTCCCCCTCTGC
*** * *
18476798 GTGCTGCCATAACCCTCAGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAAGCCA
545 GTGCTGCCATAACCCTCAGTCCAATCCGATCTTAGACTAGGAATGAACTACGTATGCCTAAGCCA
* * * * * * * *
18476863 ATCGATGAAACGAGCAAGCGGGCGGGCGGGCACCACGTCAGCCAGAGAGACGGAATGCGCAAGTC
610 ACCGACGAAAAGAACAAGCGGGCGGGCGAGCACCACGCCAGCCAGAGAGACGGAATGCACAAGCC
*
18476928 ATGGACCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTT
675 ATGGACCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTT
* * * *
18476993 TAATGGTTTGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTTATGGCAAGACGAC
740 TAATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGAC
18477058 TCGTTTTATATTTTTCACGATTTTTGAAACTTTTCACGGTTCCAGA
805 TCGTTTTATATTTTTCACGATTTTTGAAACTTTTCACGGTTCCAGA
* * * * *
18477104 TTTTTAAAATTTTTTCGAATGGATTTTTGGCCGCAAACTTGGTATACGTGATCCTTGTATTTTTG
1 TTTTTAAAATTTTGTCGAAAGGAGTTTTGGCCCCAAACTTGGTACACGTGATCCTTGTATTTTTG
18477169 TTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
66 TTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * * *
18477234 AAGTGTCCCCATTTCAGACACTTTAATGCCTACTGGTAGTAAAGCTGTAAAATCTGAAATGCTCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCT
18477299 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCA
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCA
* *
18477364 GCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTCG
261 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCG
* * *
18477429 CCGGTCAGGTTCTCCGACGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGCTCGAGC
326 CCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
*
18477494 CCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
391 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
18477559 TAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAG-CA
456 TAAGTAAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGTC-
* * *
18477623 TGGGATCGGTCAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGTCGTAACCCTCGGTCCAATCGG
520 GGGGATCGGTCAGGTCCCCCTCTGCGTGCTGCC-A-----------TAACCCTCAGTCCAATCCG
* * * * **
18477688 ATCTTAGACTGGGAATGACCTATGTATGCCTAAGCGAACCGACGAAAAGAACGGGCGGGCGGGCG
573 ATCTTAGACTAGGAATGAACTACGTATGCCTAAGCCAACCGACGAAAAGAACAAGCGGGCGGGCG
* * * * * *
18477753 AGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
638 AGCACCACGCCAGCCAGAGAGACGGAATGCACAAGCCATGGACCAATAGGGTGGTAGGTGGGTTT
* *
18477818 AGGCACATCTTCATATTTCTT-CATTCCAATGCCATTTTTATGGCTTG-GAAATTCATACAATGG
703 AGGCACATCTTCATATTT-TTGCATGCCAATGCCATTTTAATGGCTTGTG-AATTCATACAATGG
** * * *
18477881 TCCCTTAAGCCTTCGTGTGAAGTTTCATGGTAAGAAGACTCGTTTTCTATTTTTCATGATTTTTG
766 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTATATTTTTCACGATTTTTG
* **
18477946 AAACTTTTTACGGTTCGGGA
831 AAACTTTTCACGGTTCCAGA
* * *
18477966 TTTTTTCAAATTTTGT-GAGAAGGAGTTTGGGCCCCAAACTTGGTACACGTGATCCTTGTATATT
1 -TTTTTAAAATTTTGTCGA-AAGGAGTTTTGGCCCCAAACTTGGTACACGTGATCCTTGTATTTT
* *
18478030 TGTTGGCTTGCACAAAAGAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
64 TGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
18478095 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCT
129 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCT
** * *
18478160 CTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAAGGATAGGGGGCCAATATAAGGTCCAAGCAC
194 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCAC
* * * * *
18478225 AAGCACCCATCGCACATCATGTGCGCACACCCCCTCAGCTCCCCCGATCGTCGGAACCCCATTGT
259 CAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGT
* * ** * * * * * *
18478290 CGTCGGTCAGGTTCTCTGGTGATGGTGCCCTGTCAAAGAAAAATACGACACCAGGACATGCCCAA
324 CGCCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGA
* * * *
18478355 GCCCCGCATGTGCTGCCACAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
389 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
18478420 C
454 C
18478421 TTAGACTAGG
Statistics
Matches: 1170, Mismatches: 128, Indels: 64
0.86 0.09 0.05
Matches are distributed among these distances:
849 1 0.00
850 111 0.09
851 3 0.00
852 4 0.00
855 1 0.00
858 1 0.00
861 1 0.00
862 252 0.22
863 410 0.35
867 1 0.00
871 6 0.01
874 1 0.00
875 2 0.00
876 52 0.04
877 1 0.00
879 1 0.00
880 1 0.00
881 1 0.00
884 1 0.00
887 51 0.04
888 257 0.22
889 11 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (850 bp):
TTTTTAAAATTTTGTCGAAAGGAGTTTTGGCCCCAAACTTGGTACACGTGATCCTTGTATTTTTG
TTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCT
TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCA
GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCG
CCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
TAAGTAAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGTCG
GGGATCGGTCAGGTCCCCCTCTGCGTGCTGCCATAACCCTCAGTCCAATCCGATCTTAGACTAGG
AATGAACTACGTATGCCTAAGCCAACCGACGAAAAGAACAAGCGGGCGGGCGAGCACCACGCCAG
CCAGAGAGACGGAATGCACAAGCCATGGACCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
TATTTTTGCATGCCAATGCCATTTTAATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCA
CGTGAAGTTTCATGGCAAGAAGACTCGTTTTATATTTTTCACGATTTTTGAAACTTTTCACGGTT
CCAGA
Found at i:18478473 original size:26 final size:26
Alignment explanation
Indices: 18478396--18478475 Score: 142
Period size: 26 Copynumber: 3.1 Consensus size: 26
18478386 GGTCCGATCT
* *
18478396 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCC
18478422 TAGACTAGGAATGAACTCCGTATGCC
1 TAGACTAGGAATGAACTCCGTATGCC
18478448 TAGACTAGGAATGAACTCCGTATGCC
1 TAGACTAGGAATGAACTCCGTATGCC
18478474 TA
1 TA
18478476 AGTCAACCCA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCC
Found at i:18479990 original size:26 final size:26
Alignment explanation
Indices: 18479952--18480004 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18479942 CCGATCCGAT
*
18479952 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTAGGAATGAACTACGTATG
*
18479978 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTACGTATG
18480004 C
1 C
18480005 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACGTATG
Found at i:18480888 original size:26 final size:26
Alignment explanation
Indices: 18480850--18480902 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18480840 CCGGTCCGAT
*
18480850 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTAGGAATGAACTACGTATG
* *
18480876 CTTAGACTAGGAATGAAGTCCGTATG
1 CTTAGACTAGGAATGAACTACGTATG
18480902 C
1 C
18480903 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACGTATG
Found at i:18481786 original size:26 final size:26
Alignment explanation
Indices: 18481750--18481802 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18481740 TCAATCCAAT
18481750 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18481776 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18481802 C
1 C
18481803 CTAAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18482262 original size:896 final size:893
Alignment explanation
Indices: 18479613--18489024 Score: 11701
Period size: 898 Copynumber: 10.6 Consensus size: 893
18479603 GCCTTCATGT
* *
18479613 GAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATAGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
18479677 TGGCAGCAAACCTGTAAAATCTCAAATGC-CTTTTATGGGGGTGTGAGTTCTCAAGGTTTGATGA
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* ** *
18479741 GGGATAAGGGGCCAATATAAGCACTAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCC
130 GGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * *
18479806 TCGGCCCCCCCGATCGTCGGAACCCTAATGCCGCCGATCAGGTTCTTTGGCGATGCTCCGACGAT
195 CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC--TCGCGATGCT-CGACGAT
** * * * * *
18479871 GGTGCCCTAACGAAGAGAAATGCGGCACCAGCACATGCCTGAGCGCAGCATGTGCTGCTGCAACC
257 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACC
* * * *
18479936 CTTGGTCCGATCCGATCTTAGACTGGGAATGAACTACGTATGCTTAGACTAGGAATGAACTCCGT
322 CTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * * ** *
18480001 ATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCACTCAGCCGGCCAGAGGGCCAAGATGCGTA
387 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* ** * * * *
18480066 AGCAGGGGATCGGTCGGGTCCCCCTCTGCGGGCTGCCGATCCTGCTGCCGCAACCCTCGGTTTGA
452 AGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGG
* * * * * *
18480131 TCTGATCTTAGACTGGGAATAAACTTCGTATGCCTAAGCCAATCGACGAAATGAGCGGACGGACG
517 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* * * *
18480196 AGCAGCCAGTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCTTGGGTCGATAGGTTGGTAGGTGG
582 -G--G-CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
18480261 GTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAATCCATACAAT
643 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * * *
18480326 GGTCTCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTTGTTCTCTATTTTTCACGATTTT
708 GGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * * **
18480391 TGAAAGTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGTGTTTTGGCATCAAACTTGG
773 TGAAACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
**
18480456 TAGACATGATTGTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
838 TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
18480512 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTTAGACACGTTAATGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
18480576 TGGC-GACAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
66 TGGCAG-CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * *
18480640 GGGATAAGGGGCCAATATAAGGGCCAAGCACAAGCACCCATCGCACATCATGTGCGTACA-CCCC
130 GGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* ** * * * *
18480704 CTGGCCCCCCCGATCACCGGAACCCCAATGTCGTCGGTTAGGTTCTCCGACGATGCTTCGATGAT
195 CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-CG-CGATGC-TCGACGAT
* * * * * *
18480769 GGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCGCAGCATGCGCTGCTGCAACC
257 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACC
* * * *
18480834 CTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTACGTATGCTTAGACTAGGAATGAAGTCCGT
322 CTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * ** *
18480899 ATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAGCCAGAGGACCGAGATGCGCA
387 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
** * * * * *
18480964 AGCAAGGGATCGACCGAGTCCCCCTCTGCGGGCTGCCGATCTTGCTGCTGCAACCCTCGGT-TCG
452 AGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCT-G
* * *
18481028 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGT
516 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG--GCG-
* * * * * * *
18481093 GAGCGGCCAGTATGTCGGCCAGAAAGGCGGAATGCGCAAGCCGTGGATCGATAGGGTGATAGGTG
578 G-GCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
18481158 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAA
642 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
18481223 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC-ATCTCGTTTTATAATTTTCACGATT
707 TGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGA-CTCGTTTTCTATTTTTCACGATT
* * *
18481287 TTTGAAACATTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
771 TTTGAAACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * *
18481352 GGTAGACGTGATCCTTGTATTTATGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTC
836 GGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
18481410 GAAGTGTACAAGATTTTGGGACCACTTGAAAAAAGTGTCCCCATTTCCGACACTTTAATGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
18481475 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTTGAGGTTTGATGAG
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
18481540 GGATAAGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCACACATCATGTGCGCACACCCCCC
131 GGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * *
18481605 CGACCCCCCCGATCG-CTGGAACCCCAATGCCACCGGTCAGGTTCTTCAGCAATGCTCCGACGAT
196 CGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTC-TC-GCGATGCT-CGACGAT
*** * * * * * **
18481669 AAAGCCCCGATGAAAAAAAATGCGACACCAGCACATGCTCGAGCCCAGAATGTGCTTTCGCAACC
257 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACC
* * ** **
18481734 CTTGTTTCAATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
322 CTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * *
18481799 ATGCCTAAGTTAACCCATGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACA
387 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * ** * * *
18481864 AGCCAGGGATCGGCCGGGTCCCCCTCTACGTGCTAACGATCCTGCTACTGCAACCCTCAGTCTAG
452 AGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGG
* * * *
18481929 TCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCTACCGACGAAAAGAGCGAGCGGGCG
517 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
*
18481994 GGCACTATGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
582 GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
18482059 AGGCAAATCATCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
647 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
18482124 CCTTAAGCCTTCATGTGAAGTTTCAGGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAA
712 CCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
*
18482189 ACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAATCTTGGTAGA
777 ACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * *
18482254 CATGATCCTTGTATTTTTTTTGGCTTGCACAAAATAATTCATCTAAAAACTC
842 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
18482306 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
18482371 TGGCAGCAAACCAGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
18482436 GGATAGGGGGCCAATATAAGGGCCACGAACCAGCACCCATTGCACATCATGTGCGCACACCCCCC
131 GGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * *
18482501 CTGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCAGGTGATGCTCGGGCGAT
196 C-GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC--GCGATGCTC-GACGAT
* ** * * * * * *
18482566 GGTGCCCCGACGAAGAAAAATGTGGCAGTAGCAGATGCTCGAGCCCAGCATCTACTGCTGCAACC
257 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACC
* *
18482631 C----T-C-G---G-TC-----C-------G-A-TCCG-AT-CTTAGACTAGGAATGAACTCTGT
322 CTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * *
18482670 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCTAGAGGGGCGAGATACGTA
387 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* ** * * **
18482735 AGTCGACGATCGGCCAGGT--CCC-C--C-T-CTG-C-A---TGCTGCCAAAACCCTCAGTCTGG
452 AGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGG
* *
18482788 TCCT-ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGT
517 T-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGC
* * * *
18482852 GGGCGGGCACTACGCC-GCTAGAGAGGCGGGATACACAAGCCGTGGATCAATAGGGTGGTAGGTG
577 GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * *
18482916 GGTTTAGGCACATATTCATATTTCTACGTGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAA
642 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
18482981 TGGTCCCTTAAGCCTCCGTGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGATTT
707 TGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** * * *
18483046 TCAAAACTTTTTACGGCTT-GGGATTTTTTAAAATTTTTTC--AA--AATTTTGGCCCC-ATCTT
772 TTGAAACTTTTTGCGG-TTAGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* *
18483105 GGTAGACGTTATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
836 GGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
18483163 GAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATTGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
18483228 TGGCAGCAAACCTGTAACATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* ** *
18483293 GGATAGGGGG-AAATATAAGGGCCAAGCACCAGTGCCAATCGCACATCATGTGCGCACA--CCCC
131 GGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * *
18483355 CTG-CCCCCCGATCTTCGGAACCCCAATGCCGCTGGTCAGG-T-T--C--T-CT-GACGA---TG
196 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGCGATGCTCGACGATGGTG
* * * * * * *
18483408 CTCTGGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCAAGTGCTACCGTAACCCTCG
261 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTTG
* * * *
18483473 GTCCGATCTGATCTTGGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATAAAC-CCGATATG
326 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG-TATG
* * * * * *
18483537 CCTAAGTCAACCCACGAAACGACCGTGTGGGCGCTCAGTCGGCCAAAGGGGTGGGATGTGCAAGC
390 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * *
18483602 CGGGGATCGACCGAGTCCCCCCGCTACGTGCTGCTGATCCTGCTGCCGCAACCCTCGATTC-GGT
455 CGGGGATCGACCGGGT-CCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTC-AGTCTGGT
** *
18483666 -TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATAAAATGAGCGGGCGGGCG
518 CT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* * * *
18483730 GGCACTACGCCGACCAGAGAGGTGGGATGCGCAAGCCTTGGATCAATAGGGTGGTAGGTGGGTTT
582 GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
18483795 AGGCACATCTTCATATTTCTGCATGCCAATGCTATTTTTGTGGCTTGTAAATTCATACAATGGTC
647 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
18483860 CCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCTTTTTCTATTTTTCATGATTTTCGAA
712 CCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * * *
18483925 AGTTCTTGCGGTTAGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACCTGGTAGA
777 ACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
18483990 CGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAATTC
842 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
18484042 AAAGTGTACAAGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGG-TGA
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT-A
* * * *
18484106 TTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCAAGGTTTGATGA
65 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
18484171 GGGATAGGGGGCCAATATAAGGGCCATGCACCAGCACCCATCGCACATCATGTGCGCACACCCCC
130 GGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * *
18484236 CCGG-CCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGAT
195 CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-CG-CGATGCT-CGACGAT
* * * *
18484300 GGTGCCCC-AGTGAAGAAAAATGCGGCACCAGCCCATGCCCGAGCCCAGCATGTGCCACCGCAGC
257 GGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAAC
* * *
18484364 CCTTGGTTCGATCCT-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTC
321 CCTTGGTCCGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * * * *
18484428 GTATGCCTAAGTCAACCCATGAAACGAGCATGCAGGCGCTCAGTCGGCTAGAGGGGCAGGATGCA
385 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
** * * * * * *
18484493 CAAATCGGGGATCGATCGGGTGCTCCTCTACGTACTGCCGATCCTGCTG-TGACAACCCTCAGTC
450 CAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCG-CAACCCTCAGTC
* *
18484557 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGG
514 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--
* * *
18484622 GCGGACGGGCACTACGCCAGCCAGAGCGGCGGGATGCGCAAGCCGTGGATCGATTGGGTGGTAGG
577 G-GG-CGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
18484687 TGGGTTTAGGCACATCTGCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCGTAC
640 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
18484752 AATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGATGGCTCGTTTTCTATTTTTCACGAT
705 AATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * * *
18484817 TTTCAAAACTTTTTTCGGTTCA-AGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAC
770 TTTTGAAACTTTTTGCGGTT-AGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
18484881 ATT-ATAGACATGATCCTTGTATTTTT-TTGGCATGAACAAAAAAATTCAGCAAAAAACTC
834 -TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
18484940 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
18485005 TGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
18485070 GGATAGGGGGCCACTATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
131 GGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
*
18485135 CGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTC-CGA---T----GATGGTG
196 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGCGATGCTCGACGATGGTG
* * * * * * **
18485192 CCTCGGCAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCCCG
261 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTTG
* * * * *
18485257 GTCCGGTCTGATCTTAGACTAGGAATGGACTCCGTATGCTTAGACTAGGAATGAACTCCGTGTCC
326 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * *
18485322 CTAAGTCAACCCAAGAAACGAGCGTACGGGCGCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCC
391 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* ** * **
18485387 GGGGATCGACCGGGT-CCCCTCTACGTGCTGCCGATCCTATTGCCACAACCCTCAGTCTGGTCCA
456 GGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTG
*
18485451 ATCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACCGACGAAACGAGCGGCCTGGCGGGCG
521 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-G---GGCGGGCG
* * * *
18485516 GCCAGTACGCTGGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTT
582 GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
18485581 AGGCAGATCTTCACATTTCTGCATGGCAATGACATTTTTATGGCTTGTAAATTCATACAATGGTC
647 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
18485646 CCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAA
712 CCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * *
18485711 ACTTTTTACGGTTCA-GGATTTTTTAAAATTTTTTCGTAAGGAGTTTTGGCCCTAAACTTGGTAG
777 ACTTTTTGCGGTT-AGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
** * * *
18485775 ATGTGATCCTTGTATTTTGGTTGACATGCACAAAAAAATTCAGCTAAAAAATC
841 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
18485828 GATGCGTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
18485893 TGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * * *
18485958 GGGATAAGCGGCCAATATATGGGCCCAGCACCAGCACCCATCGCACATCATGTGCGCACAACCCC
130 GGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* *
18486023 CCGGCCCCCCCGATCGCCAGAACCCC-A-----------A-----T-GC--T-C-CGACGATGGT
195 CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGCGATGCTCGACGATGGT
* * * *
18486066 GCCCCGACAAAGAAATATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC
260 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTT
* * * * * *
18486131 GATCCAGTTTGATCTTAGACTGAGAATGAACTCCCTATGCTTAGACTGGGAATGAACTCGGTATG
325 GGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* *
18486196 CCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGC
390 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * ** * *
18486261 CGGGGAACGATCGGGTTACCCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGATCCGGTCC
455 CGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTC-A----G---
*
18486326 AATCTTAGACTAGGAATGAACTCCGTATCCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
512 -----T---CT-GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
18486391 CCTACGAAACGAGCGTGC-GG-GTGCTC-A-GCCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGA
559 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
** * *
18486452 TCGATAGGGTGGTAGGTGGGTTTAACCACATCTTCATAATTTTTGCATGCCAATGCCATTTTCAT
624 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT-ATTTCTGCATGCCAATGCCATTTTTAT
* * ** * *
18486517 GGCTTCTGAATTCATACAATGGTCCCTTAAGCCTTCGCATGAAATTTCATGGCAAGACAACTCGT
688 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGT
* * * * * ** *
18486582 TTTCTCTTTTTCATGATTTTGGAAACTTTTTGTGGTTCGGGATTTTTTAAAA-TTTTTCCAAAAG
753 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTCGGAAGG
*
18486646 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
818 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
18486711 GCCAAAAACTC
883 GCTAAAAACTC
* * *
18486722 GAAGTGTACAATATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
18486787 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
**
18486852 GGATAGGGGGCCAATATAAGGGTGAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
131 GGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* *
18486917 TCGGCCCCCCCGATCGACGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTCGGCGAT
196 -CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-CG-CGATGC-TCGACGAT
* * * *
18486982 GGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACC
257 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACC
* * * * * *
18487047 CTCGATCTGGTTTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCGGT
322 CTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * *
18487112 ATGCCTAAGTCAACCCATGAAACGAACGTGCGGTCGCTCAGCCGGCCAGAGGGGTGGGATGCACA
387 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * *
18487177 AGACGGGGATCGGTCC-GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTC-GATCT
452 AGCCGGGGATC-GACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCT
* * * * ** * *
18487240 GAT-TCGATCTTAGAGTAGAAATGAACTCCGTATGCCTAAAACAACCGATGAAACGTGCGGGCAG
515 GGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--
*
18487304 GCGTGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGG
577 G-G-GCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
*
18487369 TGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
640 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
18487434 AATGGTCCCTCAAGCCTTCGTGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCATGAT
705 AATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* *
18487499 TTTTGAAACTTTTTACGGTTCA-GGATTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCCCAAAC
770 TTTTGAAACTTTTTGCGGTT-AGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
18487563 TTGGCAGACGTGATCCTTGTTTTTTTGTTGGCATG--CAAAAAAA---AG-TAAAAACTC
834 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
18487617 GAAGTGTACAAGATTTGGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
18487682 CGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-CTGAGGTTTGATGA
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAGGTTTGATGA
**
18487746 GGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCATACATCATGTGCGCACACCCCC
130 GGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * * * *
18487811 CCTGGCCCCCCCGATCGCCAGAACCCCAATGTCGCCGGTCAAGTTCTCCGGCGATGCTTTGGCAA
195 CC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C-GCGATGC-TCGACGA
** * * * *
18487876 TGGTGCCCCGGTGAAGAAAAATACAGCACCAGCACATGCCCGAGCTCAGCATGTGCTGCCGCAAC
256 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAAC
* * * * * * *
18487941 CCTCGATCCAGTTTGATCTTAGACTGAGAATGAACTCCCTATGCTTAGACTGGGAATGAACTCGG
321 CCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* *
18488006 TATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGC
386 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * ** * *
18488071 AAGCCGGGGAACGATCGGGTTACCCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGATCCG
451 AAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTC-A----
18488136 GTCCAATCTTAGACTAGGAATGAACTCCGTATCCTTAGACTGGGAATGAACTCCGTATGCCTAAG
511 G--------T---CT-GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * * *
18488201 TCAACCTACGAAACGAGCGTGC-GG-GTGCTC-A-GTCGACCAGAGATGCGGGATGCGCAAGCCG
555 CCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
** *
18488262 TGGATCGATAGGGTGGTAGGTGGGTTTAACCACAGCTTCATATTTCTGCATGCCAATGCCATTTT
620 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * ** * *
18488327 CATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCGCATGAAATTTCATGGCAAGACAACT
685 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACT
* * * * * **
18488392 CGTTTTCTCTTTTTCATGATTTTGGAAACTTTTTGTGGTTCGGGATTTTTTAAAA-TTTTTCCAA
750 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTCGGA
18488456 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
815 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
18488521 TCAGCTAAAAACTC
880 TCAGCTAAAAACTC
* * *
18488535 GAAGTGTACAATATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
18488600 TAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
18488665 GGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGTGCACACCCCCT
131 GGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * * *
18488730 CGACCCTCCCGATCGTCGAAACCCCAATGCCGTCGATTAGGTTCTC-CG--G-T----GATGGTG
196 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGCGATGCTCGACGATGGTG
*
18488787 CCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTTG
261 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTTG
* * * *
18488852 ATCCGGTCTGATCTTAGATTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGC
326 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * *
18488917 CTAAGTCAACCAACGAAACGAACGTACGGGCGCTCAGCCAGCCAAAGGGGTGAGATGCGCAAGCC
391 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* *
18488982 GGGGATCAACC-GGACCCCCTCTGCGTGCTGCCGATCCTGCTGC
456 GGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGC
18489025 TGCAGAGAGG
Statistics
Matches: 7440, Mismatches: 840, Indels: 460
0.85 0.10 0.05
Matches are distributed among these distances:
838 51 0.01
841 4 0.00
842 1 0.00
843 3 0.00
844 1 0.00
847 1 0.00
848 2 0.00
850 1 0.00
851 1 0.00
852 34 0.00
853 2 0.00
854 5 0.00
856 41 0.01
857 191 0.03
858 11 0.00
859 65 0.01
860 5 0.00
861 1 0.00
862 200 0.03
863 26 0.00
864 88 0.01
865 1 0.00
866 1 0.00
867 3 0.00
868 2 0.00
869 3 0.00
870 1 0.00
871 92 0.01
872 7 0.00
873 27 0.00
874 195 0.03
875 192 0.03
876 35 0.00
877 65 0.01
878 15 0.00
879 186 0.03
880 43 0.01
881 1 0.00
882 40 0.01
883 1 0.00
884 1 0.00
886 2 0.00
887 346 0.05
888 311 0.04
889 114 0.02
890 1 0.00
891 5 0.00
892 3 0.00
893 141 0.02
894 266 0.04
895 688 0.09
896 659 0.09
897 112 0.02
898 885 0.12
899 620 0.08
900 454 0.06
901 131 0.02
902 50 0.01
903 2 0.00
905 28 0.00
906 186 0.03
908 1 0.00
910 1 0.00
911 3 0.00
912 59 0.01
913 195 0.03
914 13 0.00
915 4 0.00
916 3 0.00
917 38 0.01
918 192 0.03
919 233 0.03
920 4 0.00
921 45 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (893 bp):
GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGCGATGCTCGACGATGGTG
CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTTG
GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
GGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTG
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
TTTGCGGTTAGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
Found at i:18484417 original size:26 final size:26
Alignment explanation
Indices: 18484381--18484433 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18484371 TCGATCCTAT
18484381 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18484407 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18484433 C
1 C
18484434 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18486358 original size:26 final size:26
Alignment explanation
Indices: 18486329--18486379 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18486319 CCGGTCCAAT
18486329 CTTAGACTAGGAATGAACTCCGTATC
1 CTTAGACTAGGAATGAACTCCGTATC
*
18486355 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
18486380 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATC
Found at i:18486439 original size:185 final size:185
Alignment explanation
Indices: 18486123--18486461 Score: 520
Period size: 185 Copynumber: 1.8 Consensus size: 185
18486113 TGTGCTACCG
*** *
18486123 CAACCCTCGATCCAGTTTGATCTTAGACTGAGAATGAACTCCCTATGCTTAGACTGGGAATGAAC
1 CAACCCTCGATCCAGTCCAATCTTAGACTGAGAATGAACTCCCTATCCTTAGACTGGGAATGAAC
* *
18486188 TCGGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGAT
66 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGAT
*
18486253 GCGCAAGCCGGGGAACGATCGGGTTACCCTCTGCGTGCTGCCAATCCTGCTGCCA
131 GCGCAAGCCGGGGAACGATAGGGTTACCCTCTGCGTGCTGCCAATCCTGCTGCCA
* *
18486308 CAACCCTCGATCCGGTCCAATCTTAGACT-AGGAATGAACTCCGTATCCTTAGACTGGGAATGAA
1 CAACCCTCGATCCAGTCCAATCTTAGACTGA-GAATGAACTCCCTATCCTTAGACTGGGAATGAA
* * *
18486372 CTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG-AGAGGTGGG
65 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAG-GGCGGG
* *
18486436 ATGCGCAAGCCGTGGATCGATAGGGT
129 ATGCGCAAGCCGGGGAACGATAGGGT
18486462 GGTAGGTGGG
Statistics
Matches: 138, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
184 3 0.02
185 135 0.98
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.19
Consensus pattern (185 bp):
CAACCCTCGATCCAGTCCAATCTTAGACTGAGAATGAACTCCCTATCCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGAT
GCGCAAGCCGGGGAACGATAGGGTTACCCTCTGCGTGCTGCCAATCCTGCTGCCA
Found at i:18487099 original size:26 final size:26
Alignment explanation
Indices: 18487063--18487115 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18487053 CTGGTTTGAT
18487063 CTTAGACTGGGAATGAACTTC-GTATG
1 CTTAGACTGGGAATGAAC-TCGGTATG
18487089 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCGGTATG
18487115 C
1 C
18487116 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCGGTATG
Found at i:18487740 original size:895 final size:904
Alignment explanation
Indices: 18486050--18489024 Score: 4236
Period size: 895 Copynumber: 3.3 Consensus size: 904
18486040 CAGAACCCCA
* * * *
18486050 ATGCTCCGACGATGGTGCCCCGACAAAGAAATATGCAGCACCAGCACATGCCCGAGCCCAGCATG
1 ATGCTTCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATG
18486115 TGCTACCGCAACCCTCGATCCAGTTTGATCTTAGACTGAGAATGAACTCCCTATGCTTAGACTGG
66 TGCTACCGCAACCCTCGATCCAGTTTGATCTTAGACTGAGAATGAACTCCCTATGCTTAGACTGG
* *
18486180 GAATGAACTCGGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAAG
131 GAATGAACTCGGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAAG
* *
18486245 GGCGGGATGCGCAAGCCGGGGAACGATCGGGTTACCCTCTGCGTGCTGCCAATCCTGCTGCCACA
196 GGCGGGATGCGCAAGCCGGGGAACGATCCGGTCACCCTCTGCGTGCTGCCAATCCTGCTGCCACA
18486310 ACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATCCTTAGACTGGGAATGAACTC
261 ACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATCCTTAGA----GAATGAAC-C
*
18486375 CGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGAGGTGGGATGC
321 CGTATG-C--A--CAACCTACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGAGGCGGGATGC
*
18486440 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAACCACATCTTCATAATTTTTGCATGCCAA
381 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAACCACATCTTCAT-ATTTCTGCATGCCAA
*
18486505 TGCCATTTTCATGGCTTCTGAATTCATACAATGGTCCCTTAAGCCTTCGCATGAAATTTCATGGC
445 TGCCATTTTCATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCGCATGAAATTTCATGGC
18486570 AAGACAACTCGTTTTCTCTTTTTCATGATTTTGGAAACTTTTTGTGGTTCGGGATTTTTTAAAAT
510 AAGACAACTCGTTTTCTCTTTTTCATGATTTTGGAAACTTTTTGTGGTTCGGGATTTTTTAAAAT
*
18486635 TTTTCCAAAAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTT-TTGGCATGCA
575 TTTTCCAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT-TTTTTTGTTGGCATG-A
*
18486699 CAAAAAAATTCAGCCAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAATGTCCCC
638 CAAAAAAA-T-AGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAATGTCCCC
* *
18486764 ATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
701 ATTTCAAACACTTTAATGGCTACCGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
**
18486829 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTGAAGCACCAGCACCCATCG
766 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCG
18486894 CACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGACGGAACCCCAATGCCGCCGGTCAGG
831 CACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGACGGAACCCCAATGCCGCCGGTCAGG
18486959 TTCTCCGACG
896 TTCTCCG-CG
*
18486969 ATGCTTCGGCGATGGTGCCCCGACGAAGAAAAATGC-GACACCAGCACATGCCTGAGCCCAGCAT
1 ATGCTTCGGCGATGGTGCCCCGACGAAGAAAAATGCAG-CACCAGCACATGCCCGAGCCCAGCAT
* * ** * * *
18487033 GTGCTGCCACAACCCTCGATCTGGTTTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTG
65 GTGCTACCGCAACCCTCGATCCAGTTTGATCTTAGACTGAGAATGAACTCCCTATGCTTAGACTG
* * *
18487098 GGAATGAACTCGGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGTCGCTCAGCCGGCCAGAG
130 GGAATGAACTCGGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAA
* * * * * * *
18487163 GGGTGGGATGCACAAGACGGGGATCGGTCCGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCAC
195 GGGCGGGATGCGCAAGCCGGGGAACGATCCGGTCACCCTCTGCGTGCTGCCAATCCTGCTGCCAC
* * * * * * *
18487228 AACCCTCGATCTGATTCGATCTTAGAGTAGAAATGAACTCCGTATGCC-TA-A-AA-CAA-CCG-
260 AACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACTCCGTAT-CCTTAGAGAATGAACCCGT
* * ** ** *
18487287 ATG-A-AACGTGCG-GGC-AGGCGTGCGGGCACT-ACGCCGGCCAGAGAGGCGGGATGCGCAAGT
324 ATGCACAACCTACGAAACGA-GCGTGCGGGTGCTCA-GCCGGCCAGAGAGGCGGGATGCGCAAGC
** *
18487347 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
387 CGTGGATCGATAGGGTGGTAGGTGGGTTTAACCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * ** * * *
18487412 TTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCGTGTGAAGTTTCATGACAAGACGA
452 TTCATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCGCATGAAATTTCATGGCAAGACAA
* * ** * *
18487477 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCG
517 CTCGTTTTCTCTTTTTCATGATTTTGGAAACTTTTTGTGGTTCGGGATTTTTTAAAA-TTTTTCC
* * * *
18487542 GAAGGGGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTTTTTTTGTTGGCATG-CAAAAAAA
581 AAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTTTTTTTGTTGGCATGACAAAAAAA
* * * *
18487606 -AG-TAAAAACTCGAAGTGTACAAGATTTGGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
646 TAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACA
18487669 CTTTAATGGCTACCGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-C
711 CTTTAATGGCTACCGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
**
18487733 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCATACATCATG
776 -GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATG
* * * *
18487798 TGCGCACACCCCCC-CTGGCCCCCCCGATCGCCAGAACCCCAATGTCGCCGGTCAAGTTCTCCGG
840 TGCGCACACCCCCCTC-GGCCCCCCCGATCGACGGAACCCCAATGCCGCCGGTCAGGTTCTCC-G
18487862 CG
903 CG
* * ** * *
18487864 ATGCTTTGGCAATGGTGCCCCGGTGAAGAAAAATACAGCACCAGCACATGCCCGAGCTCAGCATG
1 ATGCTTCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATG
*
18487929 TGCTGCCGCAACCCTCGATCCAGTTTGATCTTAGACTGAGAATGAACTCCCTATGCTTAGACTGG
66 TGCTACCGCAACCCTCGATCCAGTTTGATCTTAGACTGAGAATGAACTCCCTATGCTTAGACTGG
* *
18487994 GAATGAACTCGGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAAG
131 GAATGAACTCGGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAAG
* *
18488059 GGCGGGATGCGCAAGCCGGGGAACGATCGGGTTACCCTCTGCGTGCTGCCAATCCTGCTGCCACA
196 GGCGGGATGCGCAAGCCGGGGAACGATCCGGTCACCCTCTGCGTGCTGCCAATCCTGCTGCCACA
18488124 ACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATCCTTAGACTGGGAATGAACTC
261 ACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATCCTTAGA----GAATGAAC-C
* * *
18488189 CGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGTGCTCAGTCGACCAGAGATGCGGGATGC
321 CGTATG-C--A--CAACCTACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGAGGCGGGATGC
*
18488254 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAACCACAGCTTCATATTTCTGCATGCCAAT
381 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAACCACATCTTCATATTTCTGCATGCCAAT
18488319 GCCATTTTCATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCGCATGAAATTTCATGGCA
446 GCCATTTTCATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCGCATGAAATTTCATGGCA
18488384 AGACAACTCGTTTTCTCTTTTTCATGATTTTGGAAACTTTTTGTGGTTCGGGATTTTTTAAAATT
511 AGACAACTCGTTTTCTCTTTTTCATGATTTTGGAAACTTTTTGTGGTTCGGGATTTTTTAAAATT
*
18488449 TTTCCAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
576 TTTCCAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTTTTTTTGTTGGCATG-ACA
18488514 AAAAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAATGTCCCCAT
640 AAAAAA-T-AGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAATGTCCCCAT
*
18488579 TTCAAACACTTTAATGGCTA-CTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
703 TTCAAACACTTTAATGGCTACCGA-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
18488643 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGC
767 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGC
* * * * * * * *
18488708 ACATCATGTGTGCACA-CCCCCTCGACCCTCCCGATCGTCGAAACCCCAATGCCGTCGATTAGGT
832 ACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGACGGAACCCCAATGCCGCCGGTCAGGT
18488772 TCT-C-CG
897 TCTCCGCG
**
18488778 --G--T----GATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
1 ATGCTTCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATG
* * * * *
18488835 TGCTACCGCAACCCTTGATCCGGTCTGATCTTAGA-TTAGGAATGAACTCCGTATGCTTAGACTG
66 TGCTACCGCAACCCTCGATCCAGTTTGATCTTAGACTGA-GAATGAACTCCCTATGCTTAGACTG
** * * *
18488899 GGAATGAACTCCATATGCCTAAGTCAACCAACGAAACGAACGTACGGGCGCTCAGCCAGCCA-AA
130 GGAATGAACTCGGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAA
* * * * *
18488963 GGG-GTGAGATGCGCAAGCCGGGGATC-AACCGGACCCCCTCTGCGTGCTGCCGATCCTGCTGC
195 GGGCG-G-GATGCGCAAGCCGGGGAACGATCCGGTCACCCTCTGCGTGCTGCCAATCCTGCTGC
18489025 TGCAGAGAGG
Statistics
Matches: 1820, Mismatches: 193, Indels: 100
0.86 0.09 0.05
Matches are distributed among these distances:
894 4 0.00
895 506 0.28
896 5 0.00
899 8 0.00
900 136 0.07
901 131 0.07
902 8 0.00
904 4 0.00
905 42 0.02
906 176 0.10
909 4 0.00
910 4 0.00
912 66 0.04
913 208 0.11
914 12 0.01
916 1 0.00
917 43 0.02
918 187 0.10
919 273 0.15
920 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (904 bp):
ATGCTTCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATG
TGCTACCGCAACCCTCGATCCAGTTTGATCTTAGACTGAGAATGAACTCCCTATGCTTAGACTGG
GAATGAACTCGGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAAG
GGCGGGATGCGCAAGCCGGGGAACGATCCGGTCACCCTCTGCGTGCTGCCAATCCTGCTGCCACA
ACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATCCTTAGAGAATGAACCCGTAT
GCACAACCTACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAACCACATCTTCATATTTCTGCATGCCAATGCCATTTTCA
TGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCGCATGAAATTTCATGGCAAGACAACTCG
TTTTCTCTTTTTCATGATTTTGGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTCCAAAGG
AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTTTTTTTGTTGGCATGACAAAAAAATAGCT
AAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACACTTTA
ATGGCTACCGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCTCGGCCCCCCCGATCGACGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCG
Found at i:18488172 original size:26 final size:26
Alignment explanation
Indices: 18488143--18488193 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18488133 CCGGTCCAAT
18488143 CTTAGACTAGGAATGAACTCCGTATC
1 CTTAGACTAGGAATGAACTCCGTATC
*
18488169 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
18488194 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATC
Found at i:18488251 original size:185 final size:185
Alignment explanation
Indices: 18487929--18488275 Score: 509
Period size: 185 Copynumber: 1.9 Consensus size: 185
18487919 GCTCAGCATG
* *** *
18487929 TGCTGCCGCAACCCTCGATCCAGTTTGATCTTAGACTGAGAATGAACTCCCTATGCTTAGACTGG
1 TGCTGCCACAACCCTCGATCCAGTCCAATCTTAGACTGAGAATGAACTCCCTATCCTTAGACTGG
* * *
18487994 GAATGAACTCGGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAAG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAAG
*
18488059 GGCGGGATGCGCAAGCCGGGGAACGATCGGGTTACCCTCTGCGTGCTGCCAATCC
131 GGCGGGATGCGCAAGCCGGGGAACGATAGGGTTACCCTCTGCGTGCTGCCAATCC
* *
18488114 TGCTGCCACAACCCTCGATCCGGTCCAATCTTAGACT-AGGAATGAACTCCGTATCCTTAGACTG
1 TGCTGCCACAACCCTCGATCCAGTCCAATCTTAGACTGA-GAATGAACTCCCTATCCTTAGACTG
* * *
18488178 GGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGTGCTCAGTCGACCAG-A
65 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAA
* * *
18488242 GATGCGGGATGCGCAAGCCGTGGATCGATAGGGT
130 G-GGCGGGATGCGCAAGCCGGGGAACGATAGGGT
18488276 GGTAGGTGGG
Statistics
Matches: 143, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
184 3 0.02
185 140 0.98
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.20
Consensus pattern (185 bp):
TGCTGCCACAACCCTCGATCCAGTCCAATCTTAGACTGAGAATGAACTCCCTATCCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAAG
GGCGGGATGCGCAAGCCGGGGAACGATAGGGTTACCCTCTGCGTGCTGCCAATCC
Found at i:18488893 original size:26 final size:26
Alignment explanation
Indices: 18488864--18488916 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18488854 CCGGTCTGAT
* *
18488864 CTTAGATTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
18488890 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
18488916 C
1 C
18488917 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18491289 original size:26 final size:26
Alignment explanation
Indices: 18491260--18491312 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18491250 CTGATCCGAT
*
18491260 CTTAGACT-GAGAATGAACTCGATATG
1 CTTAGACTAG-GAATGAACTCCATATG
18491286 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
18491312 C
1 C
18491313 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18492193 original size:26 final size:26
Alignment explanation
Indices: 18492157--18492209 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18492147 CTGGTCTGAT
18492157 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18492183 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18492209 C
1 C
18492210 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18492369 original size:897 final size:898
Alignment explanation
Indices: 18490396--18494909 Score: 5533
Period size: 908 Copynumber: 5.0 Consensus size: 898
18490386 CCGGTCCGAT
* * * * *
18490396 CTTAGACTAGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
18490461 CGGCCAGAGGTGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGC--G-TG-C--T--
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
18490518 T--T--CGCAACCCTCGGT-CTA-CTTCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCC
131 TACTACCGCAACCCTCGGTCCGATC-T-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * ** * *
18490577 AACCAACGAAATGAGTGGGCGGCCGGGCGGGCACTACGTAGGCGAGAGAGGCGGGATGCGCAAGC
194 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCA-AGAGGAGGGATGCGCAAGC
** * *
18490642 AATGCATCGATAGCGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * ** * *
18490707 TTTATGGCTTCTAAATTCGTACAATGGTCCCCTAAGCCTTCGTGTTAAGTTTCATCGCAAGACGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
18490772 CTCGTTTTCTATTTTTCACGATTTTTTAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTTG
388 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* * * **
18490837 AAAGGATTTTTGGCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTGTTCACATGCACAAAAAA
453 GAAGGA-GTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
18490902 ATTCAGGTAAAAACTCGAAATGTACAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
517 ATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * * *
18490967 AACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTGAGGGCGTGCGAGT
581 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
18491032 TGTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATC
646 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATC
* * * * **
18491097 ATGTGCGCACACCCCCCT-GGCCCCCCCGATCGCCGAAACCCCAATGCTGTTGGTCAGGTTCTCC
711 ATGTGCGCACACCCCCCTCAGCCCCCCCGATCGTCGGAA-CCCAATGCCGCCGGTCAGGTTC-CC
* * * *
18491161 -GACGTTGCTCTGACGATGGTGCCCCGTCGAAGCAAAATGCGGCACCAGCACAATGCTCGAGCCC
774 TGACGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC-ATGCCCGAGCCC
* * * * *
18491225 AACATGTGCTACCGCAACCCTCAGTCTGATCCGATCTTAGACTGAGAATGAACT-CGATATG
838 AACATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG-TATG
* * *
18491286 CTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
18491351 CGGCCAGAGGGGCGGGATGAGCAAGCCGAGGATCGATCGGGTCCCTCTCTGCTTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
18491416 TACTATCGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TACTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * ** *
18491481 CAGACGAAACGAGTGGACGGGCAGGCGGGCAGTACGTCGGTTGAAGAGGGGGGATGCGCAAGCCG
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGG-CCAAGAGGAGGGATGCGCAAGCCG
* *
18491546 TGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCATCCCAATGCCATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * * **
18491611 AATGACTTGTAAATTCATAC-ATGGTCTCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * ** * * *
18491675 TGTTTTCTATTTTCCATAATTTTTGAAACTTTTTGCGGTTCGGGATGTTTAAAAAATTTTTCGGA
390 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * *
18491740 AGCAGTTTGGCCCC-AACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCGCAAAAAAATT
455 AGGAGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* *
18491804 CAGCTAACAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
520 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * **
18491869 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAAAGGGTGTGAGTTCTC
585 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
18491934 GAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGT
650 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGT
* * *
18491999 GCGCACACCCCACTCAGCCACCCCGATCGTCGGAACCGCAATGCCGTCGGTCAGGTTCCCTGACG
715 GCGCACACCCCCCTCAGCCCCCCCGATCGTCGGAACC-CAATGCCGCCGGTCAGGTTCCCTGACG
* * *
18492064 ATGCTCTGATGA-GGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAACGTG
779 ATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATG
*
18492128 TGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
844 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18492183 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18492248 CAGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
*** * * *
18492313 TACTGTTGCAACCCTCGGTCCGATCTGATCTTAGATTGTGAATGAACTCCGTATGCCAAAGCCAA
131 TACTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** *
18492378 CCGACGAAACGAGCGGGTAGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCA-AGAGGAGGGATGCGCAAGCCG
*
18492443 TGGATCGATAGCGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
18492508 TATGGCTTCTAAATTCTTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * *
18492573 CGTTTTGTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTTAAATTTTTTTGGA
390 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * *
18492638 AGGAATTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTAATTTTGTTGGCATGCACAAAAAACT
455 AGG-AGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
18492703 TCAGCTAAAAACTCGAAGTGTA-AACGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAA
519 TCAGCTAAAAACTCGAAGTGTACAA-GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
18492767 CACTTTAATAGCTACTGCCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
583 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
18492832 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCTAGTACCAGCACCCATCGAACATCAT
648 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCAT
* * *** *
18492897 GTGCACACACCCCCCAC-GGGACACCGATCGTCGGAACCCAATGCCGCCGGTCA-GTT---T--C
713 GTGCGCACACCCCCCTCAGCCCCCCCGATCGTCGGAACCCAATGCCGCCGGTCAGGTTCCCTGAC
* * *
18492955 --T-C-CAG-C-ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAC
778 GATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACAT
18493014 GTGCTGCCGCAACCCTCGATCTAGTCCGATCTTGGACTGGGAATGAACTCCGTATGCTTAGACTG
843 GTGCTGCCGCAA-CC-C--TC--G---G----T---CT-GG--T---CT--G-AT-CTTAGACTG
18493079 GGAATGAACTCCGTATG
882 GGAATGAACTCCGTATG
*
18493096 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18493161 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * * * * *
18493226 TGTTGCTGCAACCCTCAGTCCAATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
131 TACTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18493291 CCGACGAAACGA----GCGGGCGGGTGGGCACTACACCGACC-AGAGAGACGGATGCGCAAGCCG
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAAGAG-GAGGGATGCGCAAGCCG
*
18493351 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
** *
18493416 TATGGCTTAAAAATTCATAGAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** * **
18493481 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAATTCAGGATTTTTTAAAATTTTTTCAAA
390 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
*
18493546 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCTA-AAAAACA
455 AGGAG-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAA
18493610 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
518 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* **
18493675 CACTTTAATGGCTACTGGCAACAAATTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
583 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
18493740 TCAAGTTTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGCACCAGCACCCATCGCACATCAT
648 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCAT
* * * *
18493805 GTGCGCATACCCCCCT-GGCCCCCCCGATCGTCGAAACCCTAATGCCGCCGGTCAAG-T---T--
713 GTGCGCACACCCCCCTCAGCCCCCCCGATCGTCGGAACCC-AATGCCGCCGGTCAGGTTCCCTGA
* * *
18493863 C--T-C-C-GACGATGGTGCCCCGGA-GAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGC
777 CGATGCTCTGACGATGGTGCCCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAAC
* *
18493922 ATGTGCTACCGCAGCCCTCGGTCCGGTCTGATCTTAGGCTGGGAATGAACTTCGTATTCTTAGAC
841 ATGTGCTGCCGCA-ACC-C--T-C-G---G----T---CT-GG--T---C-T-G-A-TCTTAGAC
* *
18493987 TGAGAATGAACTCTGTATG
880 TGGGAATGAACTCCGTATG
** **
18494006 CTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCGAACGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * * *
18494071 CAGCTAGAGGGGCAAGATGCGTAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
18494136 TACTACCGTAACCCTCGATCTGGTCTGATCTTAGACT-GGAATTGAACTTCGTATGCCTAATCCA
131 TACTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAA-TGAACTCCGTATGCCTAAGCCA
* * * * *
18494200 ACCGATGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACCCCGACCAA-AGAGACGGATTCGCA
195 ACCGACGAAACGAGCGGGC--G--GGCGGGCGGGCACTACGCCGGCCAAGAG-GAGGGATGCGCA
* * * ** *
18494264 AGCCATGGATCGATAGAGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGTGTGCCAATGCA
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
18494329 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * *
18494394 C-ACTTGTTTTCTATTTTTCACGATTTTCCAAACTTTTTG-TGTTCCGAGATTTTTTAAAATTTT
385 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTT-CGGGATTTTTTAAAATTTT
* * *
18494457 TTCGGAAGGAGTTTTGGACCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCATCCACAA
449 TTCGGAAGGAG-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
** * *
18494522 TGAAATTCAGCTAAAAAATCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
513 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
18494587 TCAGACACTTTAATGGCTACTGGCAGCGAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
578 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * **
18494652 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGTACCAGCACCCATCTTAC
643 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCAC
* * * * * *
18494717 ATCATGTGGGCACACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGATTT
708 ATCATGTGCGCACACCCCCCTCAGCCCCCCCGATCGTCGGAA-CCCAATGCCGCCGGTCAGGTTC
** * * *
18494782 TTTGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
772 CCTGACGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* ** *
18494847 CAGCATGTGCTGTTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
837 CAACATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
18494909 C
1 C
18494910 CTAAGCCAAC
Statistics
Matches: 3183, Mismatches: 350, Indels: 169
0.86 0.09 0.05
Matches are distributed among these distances:
886 1 0.00
887 58 0.02
888 4 0.00
889 2 0.00
890 106 0.03
891 2 0.00
892 2 0.00
893 3 0.00
894 2 0.00
896 3 0.00
897 367 0.12
898 320 0.10
899 144 0.05
900 244 0.08
901 96 0.03
902 176 0.06
903 32 0.01
904 4 0.00
905 1 0.00
906 1 0.00
907 6 0.00
908 464 0.15
909 51 0.02
910 287 0.09
911 6 0.00
912 4 0.00
913 215 0.07
914 2 0.00
916 5 0.00
917 309 0.10
918 188 0.06
919 5 0.00
920 1 0.00
922 1 0.00
923 1 0.00
924 2 0.00
925 1 0.00
926 1 0.00
927 2 0.00
928 5 0.00
929 59 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
TACTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAAGAGGAGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAA
GGAGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCTCAGCCCCCCCGATCGTCGGAACCCAATGCCGCCGGTCAGGTTCCCTGACGAT
GCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTG
CTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:18493077 original size:26 final size:26
Alignment explanation
Indices: 18493048--18493122 Score: 150
Period size: 26 Copynumber: 2.9 Consensus size: 26
18493038 TCCGATCTTG
18493048 GACTGGGAATGAACTCCGTATGCTTA
1 GACTGGGAATGAACTCCGTATGCTTA
18493074 GACTGGGAATGAACTCCGTATGCTTA
1 GACTGGGAATGAACTCCGTATGCTTA
18493100 GACTGGGAATGAACTCCGTATGC
1 GACTGGGAATGAACTCCGTATGC
18493123 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (26 bp):
GACTGGGAATGAACTCCGTATGCTTA
Found at i:18494025 original size:26 final size:26
Alignment explanation
Indices: 18493954--18494032 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
18493944 CCGGTCTGAT
* *
18493954 CTTAGGCTGGGAATGAACT-TCGTATT
1 CTTAGACTGGGAATGAACTCT-GTATG
*
18493980 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
18494006 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTGTATG
18494032 C
1 C
18494033 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 46 0.98
27 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18497049 original size:899 final size:902
Alignment explanation
Indices: 18494860--18497137 Score: 3221
Period size: 903 Copynumber: 2.5 Consensus size: 902
18494850 CATGTGCTGT
18494860 TGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
1 TGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * * *
18494925 AAATGAACGGGCATGCGGGTAGGCGGGCACTACGTC-GCCGAAAGAGGCGGGATGTGCAAGCCGT
66 AAATGAGCGGACAGGCGGGCAGGAGGGCACTACG-CGGCC-AGAGAGGCGGGATGCGCAAGCCGT
* * * *
18494989 GGATTGATAGGGTGGTAGGTAGGTTCAGGCACATCTTCATATTTCTGTGTGCCAATGCCAATTTT
129 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTT
** *
18495054 ATGTTTTTTAAATTCATACAATGGTCCCTTATGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
194 ATGGCTTGTAAATTCATACAATGGTCCCTTATGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * * *
18495119 GTTTTTTATTTTTCACAATTTTTCAAAATTTTTACTGTTTAGGATTTTTTAAAATTTTTTCGAAA
259 GTTTTCTATTTTTCACGATTTTTGAAAATTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAA
* * * *
18495184 GGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCATAAAAAAATT
324 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCA-CAAAAAATT
* *
18495249 CAGCTAAAGACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACA
388 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
18495314 CTTTAAAGGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCAC
453 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-AC
*
18495379 CAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACACATCGCACATCATGT
517 CAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAACTACCAGCACACATCGCACATCATGT
* *** * *
18495444 GAGCACACCACCCCCGAACCCCCCAATCGCTGGAACCCCAATGCCGCCGATCAGGTTCTTCGACG
582 GAGCACACCACCCCCGAACCCCCCAATCACCAAAAACCCAATGCCGCCGATCAGGTTCTCCGACG
18495509 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
647 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * * * * *
18495574 TGCTATCGTAACCCTTGGTCTGGTCCGATCTTTAACTGGGAATGAACTCCGTATGCTTAGACTGG
712 TGCTACCGTAACCCTCGGTCCGATCCGATCTTTAACTGGAAATGAACCCCATATGCTTAGACTGC
** * * * *
18495639 GAATGAACTTCGTATGCCTAAGTCAACCCACGAATTGAGCGTGCTGGCGCTCAATCGGCGAAAGG
777 GAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAAAGA
* * * *
18495704 GGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTTTGTGTGCTACTAATCCTACTGC
842 GGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGTGTGCTACCAATCCTACTGC
* * * * *
18495765 CGCAACCCTCGGT-TCGGTCCAATCTTAGACTGTGAATGAACTCTGTATGCCTAAG-CAATCGAC
1 TGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * *
18495828 GAGACGAGCGGA-AGGGCGAGCAGGAGGGCACTACGCTGGCCAGAGAGGCGGCATGCGCAAGCTG
65 GAAATGAGCGGACA-GGCGGGCAGGAGGGCACTACGC-GGCCAGAGAGGCGGGATGCGCAAGCCG
18495892 TGGATCGATAGGGTGGTAGGTGGG-TTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
128 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
*
18495956 CATGGCTTGTAAATTCATACAATGGTCCCTTATGCCTTCACGTGAAGTTTCATGGCAAGACGACT
193 TATGGCTTGTAAATTCATACAATGGTCCCTTATGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
18496021 CGTTTTCTATTTTTAACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGA
258 CGTTTTCTATTTTTCACGATTTTTGAAAATTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGA
* * *
18496086 AGGAGTTTTGGCCCCAAACTTGGAAGGCATGATCCTTGTATTTTTATTGGCATGCACAAAAAAAT
323 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCAC-AAAAAAT
*
18496151 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGAC
387 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
18496216 ACTTTAATGGCTACTGGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-C
452 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTAC
* * * * * *
18496280 GAGGTTTGATGAGGGATAGGGGGCTAATATAAAGGCCAAGTACCAGCACCCATCGCACCTTATGT
517 CAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAACTACCAGCACACATCGCACATCATGT
* * ** * *
18496345 GCGCACA-C-CGCCCGGCCCCCCCGATCACCAAAAACCCAATGCCGCCGGTCAGGTTCTCCGACG
582 GAGCACACCACCCCCGAACCCCCCAATCACCAAAAACCCAATGCCGCCGATCAGGTTCTCCGACG
* * * * *
18496408 ATTCTCCCG-TGATTGTGCCCCGACGAAGAAAAATACGGCACCAGCCCATGCCCGAGCCCAGCTT
647 ATGCT-CCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* *
18496472 GTGCTGCCGTAACCCTCGGTCCGATCTGATC-TTAGACTGGAAATGAACCCCATATGCTTAGACT
711 GTGCTACCGTAACCCTCGGTCCGATCCGATCTTTA-ACTGGAAATGAACCCCATATGCTTAGACT
* * *
18496536 GCGAATGAAC-TCTGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
775 GCGAATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAA
* *
18496600 AGAGGCGGGATGCGCAAGCCGAGGATTGACCGGGTCCCCCTCTGTGTGCTGCCAATCCTACTGC
839 AGAGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGTGTGCTACCAATCCTACTGC
* * *
18496664 TGCAACCCTCGATCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACA
1 TGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * *
18496729 AAATGAGCGGACAGGCGGGCGGGGGGGCACTACGCGGGCCAGAGAGACGGGATGCGCAAGCCGTG
66 AAATGAGCGGACAGGCGGGCAGGAGGGCACTACGC-GGCCAGAGAGGCGGGATGCGCAAGCCGTG
* * ** * *
18496794 GATCGATAAGGTGGTAGGTGGGTTTAGGCACTTCTTCATATTTCTACGTGCCGATACCATTTTTA
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTA
* * * * * *
18496859 TGGCTTGTAAATTGATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGCCAACACGACCCG
195 TGGCTTGTAAATTCATACAATGGTCCCTTATGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
** * ** * * *
18496924 TTTTCTATTTTTCTTGATTTTTGAAATTTTTTGGGGTTCAGGATTTTTTCATATTTTTTTGGAAG
260 TTTTCTATTTTTCACGATTTTTGAAAATTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAG
* *
18496989 GAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCGTGCACAAAAAATTTC
325 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAA-TTC
*
18497053 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
389 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
18497118 TTTAATGGCTACTGGCAGCA
454 TTTAATGGCTACTGGCAGCA
18497138 CCCATCGCAC
Statistics
Matches: 1216, Mismatches: 144, Indels: 31
0.87 0.10 0.02
Matches are distributed among these distances:
898 5 0.00
899 312 0.26
900 183 0.15
901 255 0.21
903 335 0.28
904 74 0.06
905 52 0.04
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (902 bp):
TGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
AAATGAGCGGACAGGCGGGCAGGAGGGCACTACGCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTATGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACGATTTTTGAAAATTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTACCAGG
TTTGATGAGGGATAGGGGGCCAATATAAAGGCCAACTACCAGCACACATCGCACATCATGTGAGC
ACACCACCCCCGAACCCCCCAATCACCAAAAACCCAATGCCGCCGATCAGGTTCTCCGACGATGC
TCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
ACCGTAACCCTCGGTCCGATCCGATCTTTAACTGGAAATGAACCCCATATGCTTAGACTGCGAAT
GAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAAAGAGGCG
GGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGTGTGCTACCAATCCTACTGC
Found at i:18497340 original size:26 final size:26
Alignment explanation
Indices: 18497311--18497361 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18497301 CTGGTCCGAT
18497311 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* * *
18497337 CTTAGATTGGGAATGAACTCTGTAT
1 CTTAAACTGGGAATGAACTCCGTAT
18497362 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:18505057 original size:864 final size:874
Alignment explanation
Indices: 18503111--18510282 Score: 8470
Period size: 890 Copynumber: 8.1 Consensus size: 874
18503101 CATGACACCA
* * * * * *
18503111 GGGATCGATCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTGTCGTAACCCTCGGTCTGGT-TCG
1 GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCT-G
* * * *
18503175 ATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACG--A-AA-----TGAGCGGGCG
65 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCG
* * * * * * * *
18503232 GGTATTATGTCGACCAGAGAGATGGGATGCGCAAGTCGTGGATCGATAGAGTGGTAGGTGGGTTT
130 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
18503297 AGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
195 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
18503362 CCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGCTTTCTATTTTTCACAATTTTTGAA
260 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
* * *
18503427 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAAATTGGTAGA
325 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
18503492 CATGATCCTTGTATTTTTGTAGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGA
390 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGA
*
18503557 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCT
455 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
18503622 GTAAAATCTCAAATGCTCTTAAAGGGGGTGTGAGTTTTCAAGGTTTGATGAGGGATAGGGGGCCA
520 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
* *
18503687 ATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATC
585 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
** * *
18503752 GCCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGTGATGCTCTGGCGATGGTGCCCCG-GTGAA
650 GCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC--TCATG--CT--CGATGGTGCCCCGACT-AA
* * *
18503816 GAAAAATGTGGCACCAGCACATGCCCTAGCCCAGTATGTGCTGCCACAACC-C-TCGGTC-CGGT
708 GAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCGTCGGTCTCGG-
*
18503878 AA---G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CC-C---ATGAGCGTGCA
772 AATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCA
* *
18503933 GGCACTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCG
837 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * *
18503971 AGGATCAGTTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCAT-GGTTTGGTCTG
1 GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCC-TCAGTCTGGTCTG
* * **
18504035 ATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGG-GGGCAAGC
65 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCG-GGCGGGCGGGC
* *
18504099 GGGCGCTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTT
129 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
18504164 TAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
194 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
18504229 CCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGATGACTTGTTTTCTATTTTTCACGATTTTCAA
259 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAA
* * * *
18504294 AACTTTTTTCGATTCGAGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAAATTGGTAG
324 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
18504359 ACGTGATCCCTGTATTTTTGTTCGCATGCACAAAAAAAAATCAGGTAAAAACTCAAAGTGTACAA
389 ACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCAAAGTGTACAA
* *
18504424 GATTTTGTGACCATTTGAAAAAAATGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
453 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
18504489 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGGATAGGGGGC
518 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
*
18504554 CAATATAAGGGCCAAGTACCAGCACCCA-CTGCACATCACGTGCGCACACCCCCCCGGCCCCCCC
583 CAATATAAGGGCCAAGTACCAGCACCCATC-GCACATCATGTGCGCACA-CCCCCCGGCCCCCCC
* *
18504618 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-CT-A-G-T-GATGGTGCCCCGACTAAGAA
646 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCTCATGCTCGATGGTGCCCCGACTAAGAA
* *
18504678 AAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAA-CTC-TCGGTC-C-G-ATC
711 AAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCGTCGGTCTCGGAATC
* * *
18504738 CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGATACGAGCATGCAGGCA
776 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCG
* * * *
18504801 CTCAGGCGGCCAGAGGGACGGGATGCCCAAGCTG
841 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * **
18504835 GGGATTGGCCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTC-GA
1 GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTG-
* *
18504899 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGTGGGCGGGCGGGCG
65 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCG
* *
18504964 GGCACTACGTCGTCCAGAGAGACGGGA-GACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
130 GGCACTACGCCGGCCAGAGAGACGGGATG-CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * *
18505028 TAGGCTCATCTTCATATTTCTGCATGCCAATCCCATTTTTATGGCTTGTAAATTCATACAATGGT
194 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * **
18505093 CCCTTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCATTTTTTATTTTTCATAATTTTTGA
259 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT-A
* *
18505158 AAACTTTTTACGGTTC-AGGATTTTTTAAAATTTCTTT-GGAAAGAGTTTTGGTCCCAAACTTGG
323 AAACTTTTTACGGTTCGA-GATTTTTTAAAATTT-TTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * * *
18505221 TACACGTGATCCTTGTAATTTTGTTGGCATCCATAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
386 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
* *
18505286 AAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAA
451 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * * *
18505351 ACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTAAGCTCTCAAGCTTTGATGAGGAATAGGGG
516 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* * *
18505416 GCCAATATAAGTGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCTCCC
581 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
* * * * * *
18505481 GATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGTGATGCTGTGGAGATGGTGCCCCG-G
646 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC--TCATGC--T--CGATGGTGCCCCGAC
* *
18505545 TCAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCGGTTTGG
705 T-AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCTC------G
18505610 TCCGGTCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
762 T-CGGTC-T---C---G---GAA-TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
18505675 CAACTCACAAAACGAGCGTGCAGGTGCTCAACCGGCCAGAGGGGCGGGATGCTCAAGTCG
815 CAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * ** * * **
18505735 GGGATCGATCGGGTCCCCCTCGGTGTGTTGTTGATCCTGCTGCCACAACCTTCAGTCCAGTCTGA
1 GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGA
* *
18505800 TCTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAACCGACGAAACGAGCAGGCGGGCAGGCGG
66 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A--A-GCGGGCGGGCGG
* *
18505865 GCGGGCACTACGCTGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
127 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
18505930 TTTGGGCACATCTTCATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATT
192 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * * * ** *
18505995 GTCCCTTATGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTCTAATGACCTTC
257 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * * **
18506060 AGAACTTTTTGCGGTTCCG-GATTTTTTAAATTTTTTTTGGAAGGAGTTTTGGCCCCAACCTTTT
322 AAAACTTTTTACGGTT-CGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * *
18506124 TAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAGCTCGAAGTGTAC
386 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
* *
18506189 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGGAGCAG
451 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
18506254 ACCTGTAAAATCTCAAAAGCTCTTTAA-GGGGTATAAGTTCTCAAGGTTTGATGAGGGATAGGGG
516 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* *
18506318 GCTAATATAAGGGCCAAGTACCAGCACCGATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
581 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
* * * *
18506383 AATCGCCGGAACTCCAATGCCGCCGGTCAGGTTCTCCGTCGATGCTCCGACGATGTTGCCCCG-G
646 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-TC-ATGCT----CGATGGTGCCCCGAC
* * * * * *
18506447 TGAAGAAAAATGTGACCCCAGCACATGCTCGAGCCCATCATGTGTTGCCGTAACCCTTGGTCCGG
705 T-AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC----T-C-G
*
18506512 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
762 T-CGGTC-T---C---G---GAA-TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * *
18506577 CAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGGCAGAGGGGCGGGATGCGCAAGCCG
815 CAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * ** *
18506637 AGGATCGGCCAGGT--CCC-C--C-T-CTG-C-A---TGCTGCTACAACCCTCGGTCTGGTCTGA
1 GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGA
* * * * *
18506690 TCTTAGATTGGGAGTGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGTGGGCGGGTGGGCGG
66 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A---AGCGGGCGGGCGG
* * *
18506755 GCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGATGGTAGGTGGG
127 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* **
18506820 TTTAGGCACATCTTCATATTTCTGCGTGTGAATGCCATTTTTATGGCTTGTAAATTCATACAATG
192 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
18506885 GTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCGTTTTTTATTTTTCATGATTTTT
257 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
18506950 TAAACTGTTTGA-GGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGTCCCCAAACTTGG
322 AAAACT-TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
*
18507014 TAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTAC
386 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
* ** *
18507078 AAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATACCTACTGGTAGCAA
451 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
18507143 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGTTAGGGG
516 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* **
18507208 GCCACTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCACGCACACCCCCCGGCCCCCCC
581 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
* * ** *
18507273 GATCGCTGGAACCCCAATGCCACCGGTCAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGGC
646 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC-TCCTC-ATGCT----CGATGGTGCCCCGAC
* * * *
18507338 GAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCCGTCCGAT
705 TAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCT-CGT-CG--
* *
18507403 ATGATCTTAGATCGGGAATGAACTCTGTATGCTTAAACTGGGAATGAACTCCATATGCCTAAGTC
765 --G-TC-----TC-GGAAT---C-C-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * *
18507468 AACCCACAAAACGAGCATGC-GGTCGCTCAACCGGTCAGAGGGGCGGGATGCACAAGCCG
816 AACCCACGAAACGAGCGTGCAGG-CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * *
18507527 AGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCCGTAACCCTC-GATCTGAG-CT
1 GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCTG-GTCT
* *
18507590 GATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-----CGAGCGGGC
64 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGC
* * ** * * *
18507647 AGGTACTATACCGGCTAGAGAGACGGGATACGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTT
129 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
18507712 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTACGGCTTCTAAATTCATACAATGGT
194 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
18507777 CCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCACGATTTTTGA
259 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAA
* * * * *
18507842 AACTTTTTATGGTTCAAGATTTTTTAAAATTTTTTTGGAAAGAGTTTTGTGCCCCAAACATGGTA
324 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG-GCCCCAAACTTGGTA
* * *
18507907 GTCGTGATCCTTGTATTTTT-TCTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAGA
388 GACGTGATCCTTGTATTTTTGT-TGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
18507971 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
452 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
18508036 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
517 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
* *
18508101 CCACTATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGG-CCCCCC
582 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCC
* * * * * * *
18508165 GATCGCCGAAACCCCAATGCTGCCGGTCAGG---TGCTC-TG-ACAATGGTGACCCGGA-GAAGA
646 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCTCATGCTCGATGGTG-CCCCGACTAAGA
18508224 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC-C-TCGGT-TCGG--T
710 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCGTCGGTCTCGGAAT
* * ** * *
18508284 GC-AAT-CTTAGACTGGGAATGAACTTTGTATGCCTAAGTCATCCCACGAAACGAGCATGC-GAG
775 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAG-G
* * * *
18508346 CGCTCAGTCGGCCAGAGGGGCTGGATGCACAAGCTG
839 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
** * * * *
18508382 GGGATCAATCGGGTCCCCCTTTGCGTGCTGTCGATCCTGCTACTGCAACCCTCAGTCTGGTCTGA
1 GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGA
* * * *
18508447 TGTTAGACTGGGAATTAACTCCGTATGCCTATG-CAACCGACGAAACGAA-----CGGGCGGGTG
66 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AAGCGGGCGGGCGGGCG
* * *
18508506 GGCACTACGTCGGCCAGAGAGACGGGATGCGCGACCCGTGGATCGATAGGGTGGTAGGTGGGTTT
130 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
18508571 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGAAAATTCATATAATGGTC
195 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
18508636 CCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTCAAA
260 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
* * *
18508701 ACTTTTGACGTTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGA
325 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
*
18508766 CGTGATCCTTGTATTTTT-TTGGCATGCA-AAAAACAATTCAGCCAAAAACTCAAAGTGTACAAG
390 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCAAAGTGTACAAG
* * *
18508829 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACATTTTAATGGCTATTGGCAGCAAACC
454 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
18508894 TGTAAACTCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
519 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
* * * * *
18508958 AATATAACGGCCAAGTGCCAGCACCCATCACACATCATGTGCGCACACCCCCTGG-CCCCCCTAT
584 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
* * * *
18509022 CGCCGGAACCCCAAT-CTCACCGGTTACGTTCT-CTGGCCATGCTCCGGCCATGGTG-CCCGACG
649 CGCCGGAACCCCAATGC-CGCCGGTCAGGTTCTCCT---CATGCT-C-G--ATGGTGCCCCGACT
* * * *
18509084 AAGAAAAATGCGGCA-CAGCACATGCCTGAGCCAAGCATGTGCTGTCGCAACCCTCGGTCTGGCC
706 AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCTC-GTC--G--
*
18509148 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTA
765 -G-TC-T---C---G---GAA-TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
** * * *
18509213 ACCCACGAAACGAGCGTGCAGGCGCTCAGTAGGCCAGAGGTGCGTGATGCGTAAGCCG
817 ACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* ** * * * * * * ** *
18509271 GGGATCGGTCGAGTCCCCCTCTGCAAGCTGCCAATCTTGCTGCCGTAAACGTCAATCCAGTCTAA
1 GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGA
* * ***
18509336 TCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCGACGAAACGAGCCAACGGGCGGGCGG
66 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGG
* *
18509401 GCGA-TACGCCGGCCAGAGAAACGGGATGCGCAAGCGGTGGATCGATAGGGTGGTAGGTGGGTTT
131 GC-ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
18509465 AGACACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
195 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
18509530 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAAGATTTTTGAA
260 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
* * *
18509595 ACTTTTTACGGCTGGAGATTTTTT-AAATTTTTTCGGAAGGGGTTTTGGCCCCAAACTTGGTAGA
325 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
*
18509659 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGA
390 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGA
* ** *
18509724 TTTTGAT-ACCATTTGAAAAAAGTATCCAAATTTCAGGCACTTTAATGGCTACTGGCAGCAAACC
455 TTTTG-TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
18509788 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
519 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
* * * * *
18509853 AATATAAGGTCCAACTACCAGCACCCATTGCACATCATGTGCGCACATCCCCCCCGACCCCCTCG
584 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCCCG
** * * * * * *
18509918 ATCATCGGAACCCCAATGCCGCTGGTTAGGTTGTCCGACGATGCTCCGGCGACGGTGCTCCGGA-
647 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-TC-ATGCT----CGATGGTGC-CCCGAC
* * *
18509982 AAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGT
705 TAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCTC-GT-C-G-
18510047 CCGATCTTAGACTGGGAATGAGCTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
765 --G-TC-T---C--GG-A--A--TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
18510112 AACCCACGTAACAAGCGTGCAGGCGCTCAGCCGACCAGATGGGCGGGATGCGCAAGCCG
816 AACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* ** * * * * * *
18510171 GGGATCGGTTGGGTCCCTTTCTGCGTGATGCCGATCCTGCTGCCACAACACTCGGTCCGATCTGA
1 GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGA
* * *
18510236 TCTTAGACTGGGAATGAACTCTGTATGCCAAAGCCAACCGATGAAAC
66 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
18510283 GAGCCCAGCA
Statistics
Matches: 5493, Mismatches: 613, Indels: 372
0.85 0.09 0.06
Matches are distributed among these distances:
853 1 0.00
854 46 0.01
855 248 0.05
856 128 0.02
857 35 0.01
858 228 0.04
859 106 0.02
860 97 0.02
861 3 0.00
862 4 0.00
863 90 0.02
864 538 0.10
865 91 0.02
866 5 0.00
867 4 0.00
868 267 0.05
869 200 0.04
870 47 0.01
871 2 0.00
872 2 0.00
873 2 0.00
874 61 0.01
875 1 0.00
876 5 0.00
877 1 0.00
878 2 0.00
880 2 0.00
881 57 0.01
882 4 0.00
883 1 0.00
884 6 0.00
885 6 0.00
886 8 0.00
887 2 0.00
888 5 0.00
889 283 0.05
890 863 0.16
891 48 0.01
892 236 0.04
893 66 0.01
894 323 0.06
895 90 0.02
896 4 0.00
897 12 0.00
898 47 0.01
899 23 0.00
900 422 0.08
901 7 0.00
902 381 0.07
903 197 0.04
904 183 0.03
905 1 0.00
906 1 0.00
907 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (874 bp):
GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGA
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGG
GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA
CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCTCATGCTCGATGGTGCCCCGACTAAGAAAAATG
TGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCGTCGGTCTCGGAATCCGTAT
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCGGCCAGAGGGGCGGGATGCGCAAGCCG
Found at i:18505645 original size:26 final size:26
Alignment explanation
Indices: 18505616--18505668 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18505606 TTGGTCCGGT
18505616 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18505642 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18505668 C
1 C
18505669 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18506547 original size:26 final size:26
Alignment explanation
Indices: 18506518--18506570 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18506508 CCGGTCCGAT
18506518 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18506544 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18506570 C
1 C
18506571 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18509188 original size:26 final size:26
Alignment explanation
Indices: 18509152--18509204 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18509142 CTGGCCCGAT
18509152 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18509178 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18509204 C
1 C
18509205 CTAAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18510081 original size:26 final size:26
Alignment explanation
Indices: 18510052--18510104 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18510042 CCGGTCCGAT
*
18510052 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18510078 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18510104 C
1 C
18510105 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18510513 original size:272 final size:272
Alignment explanation
Indices: 18510011--18510528 Score: 797
Period size: 272 Copynumber: 1.9 Consensus size: 272
18510001 GCACATGCCT
* * * *
18510011 GAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAGCTCCGTA
1 GAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGGTCCGATCATAGACTGGGAATGAACTCCATA
* *
18510076 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGTAACAAGCGTGCAGGCGCTCA
66 TGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCA
* * * * * *
18510141 GCCGACCAGATGGGCGGGATGCGCAAGCCGGGGATCGGTTGGGTCCCTTTCTGCGTGATGCCGAT
131 GCCGACCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCTCTCTGCGTGATGCCAAT
* ** *
18510206 CCTGCTGCCACAACACTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCAAAGCC
196 CCTGCTGCCACAACACTCGATCCGATCCAATCTTAGACTAGGAATGAACTCTGTATGCCAAAGCC
18510271 AACCGATGAAAC
261 AACCGATGAAAC
*
18510283 GAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGGTCCGATCATAGTCTGGGAATGAACTCCATA
1 GAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGGTCCGATCATAGACTGGGAATGAACTCCATA
* *
18510348 TGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
66 TGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCA
* *
18510413 GCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGAAT-GATCGGGTCGCC-CTCTGCGTGCTGCCA
131 GCCGACCAGAGGGGCGAGATGCGCAAGCCGGGG-ATCGATCGGGTC-CCTCTCTGCGTGATGCCA
* *
18510476 ATCCTGCTGCCACAACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACTC
194 ATCCTGCTGCCACAACACTCGATCCGATCCAATCTTAGACTAGGAATGAACTC
18510529 CATATGCTTA
Statistics
Matches: 221, Mismatches: 23, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
272 217 0.98
273 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (272 bp):
GAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGGTCCGATCATAGACTGGGAATGAACTCCATA
TGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCA
GCCGACCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCTCTCTGCGTGATGCCAAT
CCTGCTGCCACAACACTCGATCCGATCCAATCTTAGACTAGGAATGAACTCTGTATGCCAAAGCC
AACCGATGAAAC
Found at i:18510538 original size:26 final size:26
Alignment explanation
Indices: 18510509--18510561 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18510499 CCGGTCCAAT
18510509 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
18510535 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18510561 C
1 C
18510562 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18511268 original size:26 final size:26
Alignment explanation
Indices: 18511239--18511291 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18511229 CCAGTCTGAT
18511239 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
*
18511265 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
18511291 C
1 C
18511292 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:18512152 original size:26 final size:26
Alignment explanation
Indices: 18512116--18512168 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18512106 TTTGTTCGAT
18512116 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18512142 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18512168 C
1 C
18512169 CTAATTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18513039 original size:26 final size:26
Alignment explanation
Indices: 18513010--18513059 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18513000 CCGGTCGGAT
* *
18513010 CTTAGAGTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18513036 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
18513060 CGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18513777 original size:897 final size:898
Alignment explanation
Indices: 18510282--18514137 Score: 5123
Period size: 897 Copynumber: 4.3 Consensus size: 898
18510272 ACCGATGAAA
* * * *
18510282 CGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGGTCCGATCATAGTCTGGGAATGAACTCCAT
1 CGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
*
18510347 ATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
66 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * *
18510412 AGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGAAT-GATCGGGTCGCCCTCTGCGTGCTGCCA
131 AGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGG-ATCGATCGGGTCCCCCTCTGCGTGCTGCCG
*
18510476 ATCCTGCTGCCACAACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACTCCATATGCTTAGA
195 ATCCTGCTGCCGCAA-CC-C--T-C-G----A---T---CT--G---G---TCCA-AT-CTTAGA
* * *
18510541 CTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGT--GCT--C--A-G
234 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCTGGCATACG
* * *
18510599 CCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTA-GTGGGTTTA-ACCACAT
299 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGA-CACAT
* * *
18510662 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAAC
363 CTTCATATTTCTGCAGGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* ** * *
18510727 CTTCGCGTGAAGTTTCATGGCAAGATAACTCGTTTTCTCTTTTTCACGATTTTTGAAACTTTTTC
428 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* *
18510792 TGGTTCGAGATTTTTTAAAA-TTTTTCCAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
493 TGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * *
18510856 TCGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGCGA
558 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGA
* * *
18510921 CCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTATAAAATC
623 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* **
18510986 TCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAAATAGGGGGCCAATATAAGG
688 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * *
18511051 GCCAGGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCGTCGGAAC
753 GCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAAC
* * * * * ** *
18511116 CCTAATGCCGCCGATCAGGTTCTCCGACGAAGGTCTTG-CGATGGCACCCCGGCAAAGAAAAATG
818 CCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTC-CGACGATGGTGCCCCGACAAAGAAAAATG
* *
18511180 CTGCACCAGCACATGGC
882 CGGCACCAGCACATGCC
* * * * * *
18511197 CGAGCCCAGCATGTGCTGCCACAACCCTCCGTCCAGTCTGATCTTAGACTGGGAAAGAACTCCAT
1 CGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * *
18511262 ATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGACGCTC
66 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * *
18511327 AGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGAGTCCCCCTCTACGTGCTGTCGA
131 AGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGA
* * * * *
18511392 TCCTGTTGTCGCAACCCTCGATCCGGTCCAATCTTAGATTGGGAATGAACTCCATATGCCTAAGC
196 TCCTGCTGCCGCAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* *
18511457 CAACCGACGAAACGAGC-GGCGGGCGGGCGGGCGATACGTCGGCCAGAGAGACGGGATGCGCAAG
261 CAACCGACGAAACGAGCGGGCGGGTGGGCTGGC-ATACGTCGGCCAGAGAGACGGGATGCGCAAG
* * **
18511521 TCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCAT
325 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCAGGCCAATGCCAT
* * *
18511586 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTCAGCCTTCACGTGGAGTTTCATGGCAAAACG
390 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
18511651 ACTCATTTTCTATTTTTCATGATTTTTGAAACATTTTGTGGTTCGGGATTTTTTAAAATTTTTTT
455 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTC
* * *
18511716 GAAAGGAGTTTTAGCCCCAAACTTGGTAGTCATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
520 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
18511781 AATTCAGATAAAAACTCAAAGTGTACAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTT--
585 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
18511844 ----C---AATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGT
650 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
18511902 TATCGAGGTTTGATGAGGGATAGGGGGCCACTATAAGGGCCAAGTAGCAGCACCCATCACACATC
715 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
* * *
18511967 ATGTGCGCACACCCCCCAG-CCCCCCGATCGCCGGAACCCCAAT---ACCG-TC-GG---T-CAG
780 ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGG
* * *
18512022 -G-TTCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCC
845 CGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCC
*** *
18512074 CGAGCCCAGCATGTGCTGCCGCAACCCTCCA-TTTTGTTCGATCTTAGACTGGGAATGAACTCCG
1 CGAGCCCAGCATGTGCTGCCGCAACCCT-CAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* * * * * *
18512138 TATGCTTAGACTGGGAATGAACTCTGTATGCCTAATTCAACCCATGGAACGAGCATGTGGGCGCT
65 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* *
18512203 CAGCCGACCAGAGGGGCTGGATGCACAAGCCGGGGATCGA-CTGGGTCCCCCTCTGCGTGCTG-C
130 CAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCC
* * * ** *
18512266 AATCCTGCTGCTGCAACCCTCTATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAC
194 GATCCTGCTGCCGCAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
*
18512331 GCCAACCGACGAAACGAGCGGGC----GGGC-GAACATTACGTCGGCCAGAGAGACGGGATGCGC
259 GCCAACCGACGAAACGAGCGGGCGGGTGGGCTG-GCA-TACGTCGGCCAGAGAGACGGGATGCGC
* * * * *
18512391 GACCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC-GTGCCAATG
322 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCAG-GCCAATG
* * *
18512455 CCATTTTTATGGCTTGAAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAA
386 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
** * *
18512520 GACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTAAAAATTT
451 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTT
*
18512585 TTTCGAAATGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
516 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
18512650 AAACAATTCAGCTAAAAACTCAAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCAT
581 AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
18512715 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
646 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
18512780 GAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAATGGCCAAGTACCAGCACCCATCACA
711 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
* * *
18512845 CATCATTTGCGCACACCCCCCTGGCCCCCCCGATCGCCGGAACCCCAATGTCGCCGATTAGGTTC
776 CATCATGTGCGCACACCCCCC-GGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTC
* * * *
18512910 TCCGGCCATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCA-CAGCACATGCA
840 TCCGGCGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCC
* * * * * * * *
18512968 TGAGCCAAGCATGTGCTGTCGGAACCCTCGGTCCGGTCGGATCTTAGAGTGGGAATGAATTCCGT
1 CGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* *
18513033 ATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTC
66 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
** * * * * * *
18513098 AGCCGGCCAGAGGTACGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCATACTGTCGA
131 AGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGA
*
18513163 TCCTGCTGCCGCAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGC
196 TCCTGCTGCCGCAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
18513228 CAACCGACGAAACGAGCGGGCGGGTGGGTTGGCGATACGTCGGCCAGAGAAACGGGATG-GTAAG
261 CAACCGACGAAACGAGCGGGCGGGTGGGCTGGC-ATACGTCGGCCAGAGAGACGGGATGCGCAAG
*
18513292 TCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCAGGCCAATGCCAT
325 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCAGGCCAATGCCAT
*
18513357 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGACG
390 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
18513422 ACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTATGGCTCAGGATTTTTTAAAATTTTTTC
455 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTC
* * *
18513487 GGAAGG-GTTTTGGCGCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
520 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
18513551 CATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCA
585 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
18513616 GACACTTTAATGGCTACTGGCAGCAAACCTGTGAAATCTCAAATGCTCTTTAAGGGGGTTTGAGT
650 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * * *
18513681 TCTAGAGGTTTGATGACGTATAGGGGGCTAATATAAGGGCCAAGTACCGAGCACCCATCGCACAT
715 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC-AGCACCCATCACACAT
* * *
18513746 CATGTGCGCACACCCCCTCGG-CCCCCCGATCGTCGAAACCCCAATGCCGCC-AGTCAGGTTGTC
779 CATGTGCGCACACCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGA-TCAGGTTCTC
* *
18513809 CGGCGATGCTCC-AGCGACGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCC
842 CGGCGATGCTCCGA-CGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCC
* * *
18513866 CGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
1 CGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* *
18513931 ATGCTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCAC-ATAACGAGCGTACGGGCGCT
66 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCT
* * ** * **
18513995 CAGCCGACCAAAGGGGCGGGATGCACAAGCCCAGGATCGGTCGGGT-CCCCTCTATGTGCTGCCG
130 CAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCG
* * * * * *
18514059 ATCCTGCTGCCGCAACACTCGGTCTGATCCGATCTTAGACTGGGAATTAACTCCGTATGCCCAAG
195 ATCCTGCTGCCGCAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
*
18514124 CCGACCGACGAAAC
260 CCAACCGACGAAAC
18514138 AAGCCCAGCA
Statistics
Matches: 2588, Mismatches: 296, Indels: 132
0.86 0.10 0.04
Matches are distributed among these distances:
872 2 0.00
873 327 0.13
876 76 0.03
877 205 0.08
878 2 0.00
879 2 0.00
880 1 0.00
882 131 0.05
883 3 0.00
884 26 0.01
885 3 0.00
887 3 0.00
888 27 0.01
889 176 0.07
890 4 0.00
891 4 0.00
892 3 0.00
893 3 0.00
894 170 0.07
895 120 0.05
896 46 0.02
897 528 0.20
898 501 0.19
899 30 0.01
900 2 0.00
902 1 0.00
905 1 0.00
909 1 0.00
910 1 0.00
911 1 0.00
913 1 0.00
914 4 0.00
915 183 0.07
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (898 bp):
CGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
AGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGA
TCCTGCTGCCGCAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCGACGAAACGAGCGGGCGGGTGGGCTGGCATACGTCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCAGGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCG
AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
TGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGC
GATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCC
Found at i:18513937 original size:26 final size:26
Alignment explanation
Indices: 18513908--18513960 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18513898 CCGGTCCGAT
18513908 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18513934 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18513960 C
1 C
18513961 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18515108 original size:26 final size:26
Alignment explanation
Indices: 18515079--18515131 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18515069 CCGGTCCGAT
*
18515079 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18515105 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18515131 C
1 C
18515132 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18515924 original size:902 final size:893
Alignment explanation
Indices: 18514137--18517242 Score: 3893
Period size: 900 Copynumber: 3.5 Consensus size: 893
18514127 ACCGACGAAA
* * * *
18514137 CAAGCCCAGCATGTGCTGCCGCAGCCCTCGGTCCGGTCCAATCTTAGTCTGGGAATGAACTCCGT
1 CAAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * *
18514202 ATGCTTACACTGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTC
66 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTC
* * * *** **
18514267 AATCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCACCTTCTGCATGCTGTAGA
131 AACCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGTGCGCTGCCGA
* * * * * * * * *
18514332 TCTTGTTGA-CGCAACCCTCAATCCGGTTTGATCTTAGACTGGGAATGAACCCCGTATGACTAAG
196 TCCTGCT-ACCACAACCCTCGATCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
** * * * *
18514396 CCAATTGACGAAACGAGCGGGCGGGCAGGCGGGCACTACACCGGCCAGAGAGGCAGGATGCG-TA
260 CCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAA
* *
18514460 GGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
325 GCTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* * * *
18514525 ATTTTTATGGCTTGTAAATTTCATACAATGGTCCCTGAAGCTTTCACGTCAACTTTCATGGCAAG
390 ATTTTTATGGCTTGTAAA-TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * ** * *
18514590 ATGACTCGTTTTCTATTTTTCACAATTTTTGCAACTTTTAACAATCCAAGATTTTTTAAAATTTT
454 ACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTT-ACGGTTCAGGATTTTTTAAAATTTT
** * *
18514655 TTCGAAGGGCGTTTTGGCCCCAAACTTGGTAAACATGATCCTTGTATTTTTTTTGGCATGCACAA
518 TTCGAA-GGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
18514720 AAAAATTCAGCTAAAAACTCGAATTGTATAAGATTTTGTGACCATTTGAAAAAA-AAGTCCCCAT
582 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTA-TCCCCAT
* * * *
18514784 TTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTGAGGGGATGT
646 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * ** *
18514849 GAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCTAAATACTAGCACCCATCGCA
711 GAGTTCTCAAGGTTTGATGAGGGATAG-GGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCA
* * * * *
18514914 CATCATGTCCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCT
775 CATTATGT-GGCACACCCCCCGACCCCC-CGATCGCCGGAACCCCAATGCCG-CGGTCAGGTTCT
* * *
18514979 CCGGCGATGCTCCGACAATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGGC-
837 CCGGTGATGCTCCGACGATGGTG-CCCGACGAAGAAAAATGTGGCACCAGCACAT-GCT
18515037 CAAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
1 CAAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * *
18515102 ATGCTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTC
66 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTC
** * * ** * *
18515167 AATTGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGAGTCCCCCTCTATGCGCTGCCGA
131 AACCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGTGCGCTGCCGA
* * ** * * * * *
18515232 TCCTGTTGCCGTAACCCTCGATCCGGTCTGATCTTAGATTGGGAACGAACTCCATATGCCTAAGC
196 TCCTGCTACCACAACCCTCGATCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * **
18515297 CAACCGACGAAACGAGCAGGCAGACGGGCGGGCGGGCGA-TACGCCAGCCTGAGAAACGGGATGC
261 CAACCGACGAAACGAGC-GG--G-CGGGCGGGCGGGC-ACTACGCCGGCCAGAGAGGCGGGATGC
** *
18515361 GCAAGCT-GTGGATCGATAACGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
321 GCAAGCTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAA
* *
18515425 TGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGGAGTTTCATGGC
386 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
**
18515490 AAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACATTTTGTGGTTCAGGATTTTTTAAAAT
451 AAGACGACTCATTTTCTATTTTTCACGATTTTTGAAAC-TTTTACGGTTCAGGATTTTTTAAAAT
* *
18515555 TTTTTTGAATGGATTTTTTGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
515 TTTTTCGAA-GGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
* *
18515620 -TAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCC
579 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCC
* * *
18515684 ATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGC
644 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
18515749 ATGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAGGCACCAGCACCCATCGC
709 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGC
*
18515814 ACATTATGTGTGCACACCCCTTCGACCCCTCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
774 ACATTATGTG-GCACACCCC-CCGACCCC-CCGATCGCCGGAACCCCAATGCCG-CGGTCAGGTT
* ** *
18515879 CTCCGGTGATGCTCCGATGATGGTGCCCAGGTGAAGAAAAATGTGGCATCAAG-ACATGCT
835 CTCCGGTGATGCTCCGACGATGGTGCCC-GACGAAGAAAAATGTGGCA-CCAGCACATGCT
* * *
18515939 CGAGCCCAGCATGTGCTGGCATAA----C---CC--T-CGA--TT---C--GG--T---CT--G-
1 CAAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * *
18515979 AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCTTGCGGGCTCTC
66 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTC
* * * * * *
18516043 AGCTGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGGTCGGGTCCCACTCTGTGTGCTGCCGA
131 AACCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGTGCGCTGCCGA
* * * * *
18516108 TCTTGCTACCACAACCCTCGGTCTGACCTAATCTTAGACTGGGAATGAACTCCGTATGCCTGAGC
196 TCCTGCTACCACAACCCTCGATCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
** * *
18516173 CAACCGACGAAACGAGCGATCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGAGCAAG
261 CAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
* **
18516238 C-CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTATGTGCCAATGCCA
326 CTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
**
18516302 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGAC
391 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * **
18516367 GACTCGTTTTTTTATTTTTCATGATTTTCAAAACTTTTTACGGTTC-GAGATTTTTTAAAATTTT
456 GACTC-ATTTTCTATTTTTCACGATTTTTGAAAC-TTTTACGGTTCAG-GATTTTTTAAAATTTT
* * **
18516431 TTGGGAAAGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAA
518 TT-CGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
18516496 AAAAATTCAGCT-AAAACTCGAAGTGTACAAGATTTTTTCACCATTTGAAAAAAGTGTCCCCATT
582 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATT
* *
18516560 TGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAATATCTCAAATGCTCTTTAAGGGGGTGTG
647 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18516625 AGTTCTCATGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCA-CCATCGCAC
712 AGTTCTCAAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCAC
* *
18516689 ATTATGTGGTCACACCCTCCCCGACCCCCCCGATAGCCGGAACCCCAATGTCGCTGGTCAGGTTC
776 ATTATGTGG-CACA-CC-CCCCGA-CCCCCCGATCGCCGGAACCCCAATGCCGC-GGTCAGGTTC
* * *
18516754 TCCGGTGATGCT-CTAGCGATGGTGACCCGACGAAGAAAAATGTGACACCCGCACATGCT
836 TCCGGTGATGCTCCGA-CGATGGTG-CCCGACGAAGAAAAATGTGGCACCAGCACATGCT
* * * * * * *
18516813 CGAGCCTAGCATGTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGCGAATGAACTCCAT
1 CAAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * * *
18516878 ACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCATCAAACGAGCATGTGGGCGCTC
66 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTC
* * * * * *
18516943 AACCGGCCAGAGGGGCGGGACGTGCAAGCCGGGGATCGATTGGGTCCCCCTTTGTGTGCTGCCGA
131 AACCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGTGCGCTGCCGA
* * * * *
18517008 TCCTGCTACCACAACCTTC-AGTTCGATCCAATTTTAGACTGGGAATGAACTCTGTATGCCTAAG
196 TCCTGCTACCACAACCCTCGA-TCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
*
18517072 CCAACCGACGAAACGAGCGGGCGGGCGGGCGGG-ACCTACGCCGGCCAGAGAGGCGGGATGCTCA
260 CCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA-CTACGCCGGCCAGAGAGGCGGGATGCGCA
* *
18517136 AG-TCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
324 AGCTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
18517200 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
389 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
18517243 ATGCTTAGAC
Statistics
Matches: 1909, Mismatches: 238, Indels: 118
0.84 0.11 0.05
Matches are distributed among these distances:
871 1 0.00
872 162 0.08
873 257 0.13
874 143 0.07
875 10 0.01
876 179 0.09
877 2 0.00
878 2 0.00
880 2 0.00
881 2 0.00
883 2 0.00
884 2 0.00
885 2 0.00
886 2 0.00
887 1 0.00
889 1 0.00
890 2 0.00
891 1 0.00
892 3 0.00
893 2 0.00
895 2 0.00
896 2 0.00
898 1 0.00
899 2 0.00
900 561 0.29
901 55 0.03
902 242 0.13
903 151 0.08
904 111 0.06
905 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
CAAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTC
AACCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGTGCGCTGCCGA
TCCTGCTACCACAACCCTCGATCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
CTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
GAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCAAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATTAT
GTGGCACACCCCCCGACCCCCCGATCGCCGGAACCCCAATGCCGCGGTCAGGTTCTCCGGTGATG
CTCCGACGATGGTGCCCGACGAAGAAAAATGTGGCACCAGCACATGCT
Found at i:18517550 original size:365 final size:365
Alignment explanation
Indices: 18516880--18517607 Score: 1029
Period size: 365 Copynumber: 2.0 Consensus size: 365
18516870 AACTCCATAC
* *
18516880 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCATCAAACGAGCATGTGGGCGCTCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATCAAACGAACATGTGGGCGCTCAA
* *** * * * *
18516945 CCGGCCAGAGGGGCGGGACGTGCAAGCCGGGGATCGATTGGGTCCCCCTTTGTGTGCTGCCGATC
66 CCGGCCAGAGGGGCGGGACGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGCCAAAC
* * **
18517010 CTGCTACCACAACCTTCAGTTCGATCCAATTTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
131 CTGCTACCACAACCCTCAGATCGATCCAATTTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
* * * * *
18517075 ACCGACGAAACGAGCGGGCGGGCGGGCGGGACCTACGCCGGCCAGAGAGGCGGGATGCTCAAGTC
196 ACCGACGAAACCAGCGGGCGGGCGGGCGAGACCTACGCCAGCCAGAGAGGCGAGATGCACAAGTC
*
18517140 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
261 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTGCATGCCAATGCCATTT
18517205 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTAT
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTAT
* *
18517245 GCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCA-CGAAACGAACGTGTGGGCGCTCA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATC-AAACGAACATGTGGGCGCTCA
* * * *
18517309 GCCGGCCAGAGGGGCGGGATGCGTAAGCTGGGGATCGACCAGGTCCCCCTCTGCGTGCTGCCAAA
65 ACCGGCCAGAGGGGCGGGACGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGCCAAA
** ** *
18517374 CCTGCTGTCGTAACCCTC-GATCTGGT-C-ATCTCTTAGACTGGGAATGAACTCCATATGCCTAA
130 CCTGCTACCACAACCCTCAGATC-GATCCAAT-T-TTAGACTGGGAATGAACTCCATATGCCTAA
* *
18517436 GCCAACTGACGAAACCCA-CGGGTGGGCGGGCGAG-CGCTACGCCAGCCAGAGAGGCGAGATGCA
192 GCCAACCGACGAAA-CCAGCGGGCGGGCGGGCGAGAC-CTACGCCAGCCAGAGAGGCGAGATGCA
*
18517499 CAAG-CTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTGCATGCCAAT
255 CAAGTC-ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTGCATGCCAAT
*
18517563 GCCATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCT
319 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
18517608 TCGTGTGAAG
Statistics
Matches: 321, Mismatches: 35, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
363 2 0.01
364 8 0.02
365 309 0.96
366 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (365 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATCAAACGAACATGTGGGCGCTCAA
CCGGCCAGAGGGGCGGGACGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGCCAAAC
CTGCTACCACAACCCTCAGATCGATCCAATTTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
ACCGACGAAACCAGCGGGCGGGCGGGCGAGACCTACGCCAGCCAGAGAGGCGAGATGCACAAGTC
ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTGCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTAT
Found at i:18518023 original size:26 final size:26
Alignment explanation
Indices: 18517985--18518037 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18517975 TCGGTCTGAT
18517985 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCTATATG
* *
18518011 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTATATG
18518037 C
1 C
18518038 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTATATG
Found at i:18518919 original size:26 final size:26
Alignment explanation
Indices: 18518883--18518932 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18518873 TCGGTCCAAT
18518883 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
18518909 CTTAGATTGGGAATGAACTCCGTA
1 CTTAGAATGGGAATGAACTCCGTA
18518933 AGCCTAACTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Done.