Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 106 of 117
Found at i:18519451 original size:26 final size:26
Alignment explanation
Indices: 18519415--18519467 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18519405 TCTGATCTTA
18519415 AGACTGGGAATGAACTCCGTATGCCT
1 AGACTGGGAATGAACTCCGTATGCCT
*
18519441 AGACTGGGAATGAACTCTGTATGCCT
1 AGACTGGGAATGAACTCCGTATGCCT
18519467 A
1 A
18519468 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCCT
Found at i:18520368 original size:26 final size:26
Alignment explanation
Indices: 18520316--18520368 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18520306 CTGGTCTGAT
* *
18520316 CTTAGACTGGGAATGAACTTCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
* *
18520342 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
18520368 C
1 C
18520369 CTAAGTCAGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:18521099 original size:908 final size:903
Alignment explanation
Indices: 18519101--18522160 Score: 4304
Period size: 916 Copynumber: 3.4 Consensus size: 903
18519091 TGCCTAAGCC
*
18519101 GTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
1 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
*
18519166 AAGGGGGTGTGAGTTCCCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
66 AAGGGGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * *
18519231 ACCCATCGTACATCATGTGCGTACACCCCCCCGCTCGACCCCCTCGATTGTCGGAACCCTAATGC
131 ACCCATCGCACATCATGTGCGCACACCCCCCCGC-CGACCCCC-CGATTGTCGGAACCCCAATGC
* * * *
18519296 CGTCGGCCAGGTTC-CTCGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAAAATGGCACCA
194 CGCCGACCAGGTTCTCTCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAAGTGGCACCA
*
18519360 GCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTTGATCTGATCTGATCTTAAGACTGGGAA
259 GCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTTGATCTGATCCGATCTTAAGACTGGGAA
*
18519425 TGAACTCCGTATGCCTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCTT
324 TGAACTCCGTATGCCTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGT
18519490 ACGGGCACTCAGTTGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGC
389 ACGGGCACTCAGTTGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGC
* *
18519555 GTGCTGCCAATCTTACTATCGTAACCCTCAGTTCTATCCAATCTTAGGCTGGGAATGAACTCCGT
454 GTGCTGCCAATCTTACTATCGCAACCCTCAGTTCGATCCAATCTTAGGCTGGGAATGAACTCCGT
18519620 ATGCCTAAGTGAACCGATGAAACGAGAGGGCTGGCGGGCGGGCACTATGCCGACCAGAGAGACGG
519 ATGCCTAAGTGAACCGATGAAACGAGAGGGCTGGCGGGCGGGCACTATGCCGACCAGAGAGACGG
*
18519685 GATGCGCAAATCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTG
584 GATGCGCAAATCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTG
*
18519750 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTACATGAAGTTTCA
649 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCA
* * *
18519815 TGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTAAAACATTTTACGGTTCGGGATTTTTTT
714 TGGCAAGATGACTCGTTTTCTATTTTTCCTGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTT
** * * * * *
18519880 AAAACCCTTTTGGAAGAATTTTTGGACCCAAACTTGGTGGACA-TGATCCATGTATTTTTGTTGG
778 AAAA-TTTTTTCGAAGGAGTTTTGGACCCAAACTTGGTAGA-AGTGATCCTTGTATTTTTGTTGG
* * * *
18519944 CATGTACAAAAAGATTTAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
841 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * * * *
18520007 GTGTCCCTATTCCAGACACTTTAATGGCTACTAGTAGCAAACCTGTAAAATCTCAAATGCTCTTT
1 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
* ** *
18520072 AAGGGGGTTTGAGTTCTTGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
66 AAGGGGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * * *
18520137 ACCCATTGCACAACATGTGTGCACACCAACCCC-CCGACCCCCCTGATCGTCGGAACCCCAATGT
131 ACCCATCGCACATCATGTGCGCACACC-CCCCCGCCGACCCCCC-GATTGTCGGAACCCCAATGC
* * * * * *
18520201 CGCCGATCAGGTTCTC-CGGCGATGCTCCGACGATGGTGCCCTGGCTAAGAAAAATGGGGCACCA
194 CGCCGACCAGGTTCTCTCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAAGTGGCACCA
* * * * * * * *
18520265 GGACATGCTCGAGCCCAGCATTTGTTGCCGCAACCCTTGGTCTGGTCTGATCTT-AGACTGGGAA
259 GCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTTGATCTGATCCGATCTTAAGACTGGGAA
* * * * ** * * *
18520329 TGAACTTCGCATGCTTAGATTGGGAATGAACTCCATATGCCTAAGTCAGCCAAC-AGAATGAGCG
324 TGAACTCCGTATGCCTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGA-AACGAGCG
* * ** * * *
18520393 TGCGGGCGCTCAGCCGGCCAGAGGGGTGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTG
388 TACGGGCACTCAGTTGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTG
* * * * * * * * * * ** * *
18520458 TGTGCTGCCGATC-CAGCTACCACAACCCTCGGTCCGGTTCGATCTTACACTGGGAGTGAACTCT
453 CGTGCTGCCAATCTTA-CTATCGCAACCCTCAGTTCGATCCAATCTTAGGCTGGGAATGAACTCC
** * * * * * * *
18520522 GTATGCCTAAGCCAACTGACGAAATGAGCGGGC-GAACGGGTGGTCGAGCACTATGCCGGCCAGA
517 GTATGCCTAAGTGAACCGATGAAACGAGAGGGCTG---GCG-GG-CGGGCACTATGCCGACCAGA
*
18520586 GAGACAGGATGCGCAAGA-CGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
577 GAGACGGGATGCGCAA-ATCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
*
18520650 TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATG
641 TCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATG
** * * *
18520715 AAGTTTCATGTTAAGATGACTCGCTTTCTATTTTTCCTGATTTTTGAATA-TTTTTGCGGTTTGG
706 AAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCCTGATTTTTGAA-ACTTTTTACGGTTCGG
* *
18520779 GATTTTTTAATATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTACTT
770 GATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGACCCAAACTTGGTAGAAGTGATCCTTGTA-TT
* *
18520844 TTT-TTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAGGTGTACAAGATTTTGTGACCATTTG
833 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
18520908 AAAAAA
898 AAAAAA
* *
18520914 GTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGAAAACCTATAAAATCTCAAATGCTCTTT
1 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
18520979 AAGGGGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
66 AAGGGGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * *
18521044 ACCCATCGTACATCATGTGCGTACACCCCCCCGCTCGGCCCCCTCGATTGTCGGAACCCTAATGC
131 ACCCATCGCACATCATGTGCGCACACCCCCCCGC-CGACCCCC-CGATTGTCGGAACCCCAATGC
**
18521109 CGCCGACCAGGTTCTCTGACGATGCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAA
194 CGCCGACCAGGTTCTCT--C---G----G-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
* * *
18521174 AGTGGCACTAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTTGATCTGATCCGATATTA
249 AGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTTGATCTGATCCGATCTTA
18521239 AGACTGGGAATGAACTCCGTATGCCTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACG
314 AGACTGGGAATGAACTCCGTATGCCTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACG
18521304 AAACGAGCGTACGGGCACTCAGTTGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCGATCGGGT
379 AAACGAGCGTACGGGCACTCAGTTGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCGATCGGGT
*
18521369 CCCCCTCTGCGTGCTGCCAATCTTACTGTCGCAACCC-CTAGTTCGATCCAATCTTAGGCTGGGA
444 CCCCCTCTGCGTGCTGCCAATCTTACTATCGCAACCCTC-AGTTCGATCCAATCTTAGGCTGGGA
18521433 ATGAACTCCGTATGCCTAAGTGAACCGATGAAACGAGAGGGCTGGCGGGCGGGCACTATGCCGAC
508 ATGAACTCCGTATGCCTAAGTGAACCGATGAAACGAGAGGGCTGGCGGGCGGGCACTATGCCGAC
*
18521498 CAGAGAGACGGGATGCGCAAATCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCAT
573 CAGAGAGACGGGATGCGCAAATCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
18521563 ATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
638 ATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * *
18521628 ATGAAGTTTCATGGCGAGAAGACTCGTTTTCTATTTTTCAC-GATTTTTGAAACTTTTTATGGTT
703 ATGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTC-CTGATTTTTGAAACTTTTTACGGTT
* * * *
18521692 CAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGATCCAAACGTGGTAGACGTGATCCTTGTA
767 CGGGATTTTTTAAAATTTTTTCG-AAGGAGTTTTGGACCCAAACTTGGTAGAAGTGATCCTTGTA
* *
18521757 TTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATT
831 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
*
18521822 TGAAAAAC
896 TGAAAAAA
* * *
18521830 GTGTCACCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTT
1 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
* * * **
18521895 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAACTACGGGC
66 AAGGGGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* *
18521960 ACCCATCGCACATCATGTGCGCACA-CCCCCCG-C--CCCCCCGATTGTTGGAACTCCAATGCCG
131 ACCCATCGCACATCATGTGCGCACACCCCCCCGCCGACCCCCCGATTGTCGGAACCCCAATGCCG
* ** * * *
18522021 TCGGTCAGGTTCTC-CGGCCATGCTCCGACGTTGGTGCCCCGACGAAGAAAAATGTGGCACCAGC
196 CCGACCAGGTTCTCTCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAAGTGGCACCAGC
* * ** * *
18522085 ACATGCTCGAGCCCAGAATGTGCTGCTGCAACCCTCGATCTGGTCCGATCTT-AGACTGGGAATG
261 ACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTTGATCTGATCCGATCTTAAGACTGGGAATG
*
18522149 AACTCCATATGC
326 AACTCCGTATGC
18522161 ATAAGCCAAC
Statistics
Matches: 1874, Mismatches: 241, Indels: 86
0.85 0.11 0.04
Matches are distributed among these distances:
898 23 0.01
899 85 0.05
900 1 0.00
903 3 0.00
904 195 0.10
905 124 0.07
906 154 0.08
907 254 0.14
908 241 0.13
909 3 0.00
910 31 0.02
911 6 0.00
913 1 0.00
914 1 0.00
915 15 0.01
916 453 0.24
917 3 0.00
918 3 0.00
919 82 0.04
920 193 0.10
921 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
AAGGGGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
ACCCATCGCACATCATGTGCGCACACCCCCCCGCCGACCCCCCGATTGTCGGAACCCCAATGCCG
CCGACCAGGTTCTCTCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAAGTGGCACCAGC
ACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTTGATCTGATCCGATCTTAAGACTGGGAATG
AACTCCGTATGCCTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTAC
GGGCACTCAGTTGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGT
GCTGCCAATCTTACTATCGCAACCCTCAGTTCGATCCAATCTTAGGCTGGGAATGAACTCCGTAT
GCCTAAGTGAACCGATGAAACGAGAGGGCTGGCGGGCGGGCACTATGCCGACCAGAGAGACGGGA
TGCGCAAATCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCC
AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATG
GCAAGATGACTCGTTTTCTATTTTTCCTGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
ATTTTTTCGAAGGAGTTTTGGACCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGC
ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
Found at i:18521268 original size:26 final size:26
Alignment explanation
Indices: 18521239--18521291 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18521229 TCCGATATTA
18521239 AGACTGGGAATGAACTCCGTATGCCT
1 AGACTGGGAATGAACTCCGTATGCCT
*
18521265 AGACTGGGAATGAACTCTGTATGCCT
1 AGACTGGGAATGAACTCCGTATGCCT
18521291 A
1 A
18521292 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCCT
Found at i:18522771 original size:713 final size:713
Alignment explanation
Indices: 18521419--18522872 Score: 2059
Period size: 713 Copynumber: 2.0 Consensus size: 713
18521409 GTTCGATCCA
* * ** * *
18521419 ATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTGAACCGATGAAACGAGAGGGCTGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCG
* * * * * * * **
18521484 GGCACTATGCCGACCAGAGAGACGGGATGCGCAAATCGTGGATTGATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCAGACCAGAGAGACGGGATGCGCAAACCATGAATCGATAGGGTAGTAGGTGAATTT
* *
18521549 AGGCATATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 AGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGGAAATTCATACAATGGTC
* *
18521614 CCTTAAGCCTTCACATGAAGTTTCATGGCGAGAAGACTCGTTTTCTATTTTTCACGATTTTTGAA
196 CCTTAAGCCTTCACATGAAGTTTCATGGCAAGAAGACTCATTTTCTATTTTTCACGATTTTTGAA
* * *
18521679 ACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGATCCAAACGTGGTAGA
261 ACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGACCCAAACGTGGCAAA
*
18521744 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTATAAGA
326 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGA
* *
18521809 TTTTGTGACCATTTGAAAAACGTGTCACCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCT
391 TTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAATAGCTACTGGTAGCAAACCT
* *
18521874 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
456 GTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCA
** **
18521939 ATATAAAGGCCAACTACGGGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCGATTG
521 ATATAAAGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCGATCA
* * * *
18522004 TTGGAACTCCAATGCCGTCGGTCAGGTTCTCCGGCCATGCTCCGACGTTGGTGCCCCGACGAAGA
586 TCGAAACTCCAATGCCATCGGTCAGGTTCTCCGGCCATGCTCCGACGATGGTGCCCCGACGAAGA
** * * *
18522069 AAAATGTGGCACCAGCACATGCTCGAGCCCAGAATGTGCTGCTGCAACCCTCGATCTGGTCCG
651 AAAATACGGCACCAGCACATGCCCGAGCCCAGAATGTGCTGCCGCAACACTCGATCTGGTCCG
* *
18522132 ATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACTGACGAAACGA-ACGGGCGGGCGGGC
1 ATCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCGACGAAACGAGA-GGGCGGGCGGGC
*
18522196 GGGCACTACGTCAG-CCA-ACGAGACGGGATGCGCAAGCCATGAATCGATAGGGTAGTAGGTGAA
65 GGGCACTACG-CAGACCAGA-GAGACGGGATGCGCAAACCATGAATCGATAGGGTAGTAGGTGAA
* **
18522259 TTTAGGTACATCTTTGTATTT-T-TGCATGCCAATGCCATTTTTATGGCTTGGAAATTCATACAA
128 TTTAGGCACATCTTCATATTTCTATG--TGCCAATGCCATTTTTATGGCTTGGAAATTCATACAA
* * * * *
18522322 TGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGACGACTTATTTTCTATTTTTCATGATTT
191 TGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAAGACTCATTTTCTATTTTTCACGATTT
* ** * * ** * *
18522387 TTGAAACTTTTTGCT-GTTTGGGATTTTTTTAAATTTTTTCGGAAGGCTTTTTGGCCCCAAACTT
256 TTGAAACTTTTT-ATGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGACCCAAACGT
*
18522451 GGCAAACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAACAACTCGAAGTGT
320 GGCAAACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGT
*
18522516 ACAAGATTTTGTGACCATTTGAAAAAAGTGTC-CTCATTTTAGACACTTTAATAGCTACTGGTAG
385 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCAC-CATTTCAGACACTTTAATAGCTACTGGTAG
*
18522580 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTTAGTT-TCGAGGTTTGATGAGGGATAA
449 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAA
* *
18522644 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCC
514 GGGGCCAATATAAAGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-CCCC
* *
18522709 CTCGATCATCGAAAC-CCTAATG-CATCCGGTCAGGTTCT-CGGACGATGCTCCGACGATGGTGC
578 CCCGATCATCGAAACTCC-AATGCCAT-CGGTCAGGTTCTCCGG-CCATGCTCCGACGATGGTGC
* * * * *
18522771 CCCGACGTAGAAAAATACGGCACCAGCACATGCCCGGGCCCAGCATGTGCTGCCGCAACACTTGG
640 CCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGAATGTGCTGCCGCAACACTCGA
18522836 TCTGGTCCG
705 TCTGGTCCG
* *
18522845 ATCTTAGAGT-CGAATGAACTCCGTATGC
1 ATCTTAGACTGGGAATGAACTCCGTATGC
18522873 TTAGACTGGG
Statistics
Matches: 655, Mismatches: 75, Indels: 23
0.87 0.10 0.03
Matches are distributed among these distances:
711 2 0.00
712 103 0.16
713 547 0.84
714 3 0.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (713 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCG
GGCACTACGCAGACCAGAGAGACGGGATGCGCAAACCATGAATCGATAGGGTAGTAGGTGAATTT
AGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGGAAATTCATACAATGGTC
CCTTAAGCCTTCACATGAAGTTTCATGGCAAGAAGACTCATTTTCTATTTTTCACGATTTTTGAA
ACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGACCCAAACGTGGCAAA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAATAGCTACTGGTAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCA
ATATAAAGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCGATCA
TCGAAACTCCAATGCCATCGGTCAGGTTCTCCGGCCATGCTCCGACGATGGTGCCCCGACGAAGA
AAAATACGGCACCAGCACATGCCCGAGCCCAGAATGTGCTGCCGCAACACTCGATCTGGTCCG
Found at i:18522875 original size:25 final size:26
Alignment explanation
Indices: 18522847--18522898 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18522837 CTGGTCCGAT
* *
18522847 CTTAGAGT-CGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCATATG
*
18522872 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGCGAATGAACTCCATATG
18522898 C
1 C
18522899 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCATATG
Found at i:18524605 original size:897 final size:892
Alignment explanation
Indices: 18522112--18528358 Score: 8173
Period size: 897 Copynumber: 7.0 Consensus size: 892
18522102 ATGTGCTGCT
* * * * *
18522112 GCAACCCTC-GATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACTGACG
1 GCAACCCTCAGTTC-GG-CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG
* * *
18522176 AAACGAACGGGCGGGCGGGCGGGCACTACGTCAGCCA-ACGAGACGGGATGCGCAAGCCATGAAT
64 AAACG-A---GCGGGCGGGCGGGCACTACGTCGGCCAGA-GAGACGGGATGCGCAAGCCGTGGAT
* ** * ** * *
18522240 CGATAGGGTAGTAGGTGAATTTAGGTACATCTTTGTATTTTTGCATGCCAATGCCATTTTTATGG
124 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
* * **
18522305 CTTGGAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGACGACTTATTT
189 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
18522370 TCTATTTTTCATGATTTTTGAAACTTTTTGCT-GTTTGGGATTTTTTTAAATTTTTTCGGAAGGC
254 TCTATTTTTCATGATTTTTGAAACTTTTT-ATGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGA
* * * *
18522434 TTTTTGGCCCCAAACTTGGCAAACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAA-TCA
318 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAAATTCA
* *
18522498 GCTAACAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTTAGACACT
382 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTAGACACT
* * * *
18522563 TTAATAGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTTAGTT-TCGA
446 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGA
*
18522627 GGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
511 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* ** **
18522692 GCACACCCCCCGACCCCCTCGATCATCGAAACCCTAATGCATCCGGTCAGGTTCT-CGGACGATG
576 GCACACCCCCCGCCCCCCT-GATCGCCGAAACCCTAATGCCGCCGGTCAGGTTCTCCGG-CGATG
* * * *
18522756 CTCCGACGATGGTGCCCCGACGTAGAAAAATACGGCACCAGCACATGCCCGGGCCCAGCATGTGC
639 CTCCGATGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* ** * * * *
18522821 TGCCGCAACACTTGGTCTGGTCCGATCTTAGAGT-CGAATGAACTCCGTATGCTTAGACTGGGAA
704 TGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * ** *
18522885 TGAACTCCATATGCCTATGTCAACCCACGAAATGAGCGTGCGGGCATTCAGTCGGCCAGAGGGGC
769 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * *
18522950 GGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACC
834 AGGATGCGCAAGCCGGGGATCGATCGAGTCCCCCTCTGCGTGCTGTCGATCCTGCTACC
* * * *
18523009 GCAACCTTCAG-T---CTGATCTTAGACTGGGAATAAACACCGTATGCCTAAGCCAACCGATGAA
1 GCAACCCTCAGTTCGGCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
* *
18523070 ACGAGCATGCGGGGGGCAGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGAT
66 AC--G-A-GC---GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
18523135 CGATAAGGTGGTAGGTGGGTTTAGGCACA-CATTCATATTTCTGTGTGCCAATTCCATTTTTATG
124 CGATAGGGTGGTAGGTGGGTTTAGGCACATC-TTCATATTTCTGCGTGCCAATGCCATTTTTATG
18523199 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
188 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* ** * ** *
18523264 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATGTTGCAAAATTTTTTTGGAAGGA
253 TTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGA
*
18523329 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAA-TCA
318 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAAATTCA
*
18523393 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACT
382 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-AGACACT
* *
18523458 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGA
446 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGA
* *
18523523 TGTTTGATGAGGGAGAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
511 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
18523588 GCACACCCCCAACTGTCCCCCCTGATCGTCAAAACCCTAATGCCGCCGGTCAGGTTCTCTGGTGA
576 GCACACCCCC--C-G-CCCCCCTGATCGCCGAAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGA
* * * *
18523653 TGCTCCGGTGACGGTGCCCCGATGAAGAAAAATATGGCACCAGCACATGCTCGAGCCCAGCATGT
637 TGCTCCGATGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
* *
18523718 GCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATTTGCTTAGACTGGG
702 GCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * *
18523783 AATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCATGCGGGCGCTCAGCCGTCTAGAGGG
767 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * * *
18523848 GCAGGATGCGCAAGTCGGGGATCGGTTGAGTCCCCCTCTACGTGCTGTCAATCCTGCTATC
832 GCAGGATGCGCAAGCCGGGGATCGATCGAGTCCCCCTCTGCGTGCTGTCGATCCTGCTACC
*
18523909 GCAACCCTCAGTTCGGCCTGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGATGA
1 GCAACCCTCAGTTCGGCC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
**
18523974 AACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCAATGGATCGATAG
65 AACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * *
18524039 GGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGGCAATGCCATTTTTATGGCTTGTA
130 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
* ** *
18524104 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAATAACTCCTTTTCTATT
195 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* *
18524169 TTTCACGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAAGTTTTTCGGAAGGAGTTTTGG
260 TTTCATGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * * * *
18524234 CCCCAAACTTGATAGACATGATCCTTGTATTTTTTTTGGGATGCAAAAAAAAATTGACCTAAAAA
325 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAA
*
18524299 CTCGAAGTGTCCAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTCTAGACACTTTAATGGC
390 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT-TAGACACTTTAATGGC
* *
18524363 TACTGGCAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTAAGTTCTTGAGGTTTGAT
454 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGAT
18524428 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
519 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * *
18524493 CCAACTGTCCCCCCTGATCGTCAAAACCCTAATGCCGCCGGTCAGGTTCTCTGGTGATGCTCCGG
584 CC--C-G-CCCCCCTGATCGCCGAAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGA
* * *
18524558 TGACGGTGCCCCGATGAAGAAAAATATGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGC
645 TGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* *
18524623 AACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATTTGCTTAGACTGGGAATGAACT
710 AACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * *
18524688 CCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGTCTAGAGGGGCAGGATG
775 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATG
* * * * * * *
18524753 CGTAAGTCGGGGATCGGTTGAGTCCCCCTCTACGTGCTGTCAATCCTGCTATC
840 CGCAAGCCGGGGATCGATCGAGTCCCCCTCTGCGTGCTGTCGATCCTGCTACC
*
18524806 GCAACCCTCAGTTCGGCCTGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGATGA
1 GCAACCCTCAGTTCGGCC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
* **
18524871 AACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCAATGGATCGATAG
65 AACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * *
18524936 GGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGGCAATGCCATTTTTATGGCTTGTA
130 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
* ** *
18525001 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAATAACTCCTTTTCTATT
195 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* *
18525066 TTTCACGATTTTTGAAACTTTTTATGGTTTGGGA-TTTTTAAAAGTTTTTCGGAAGGAGTTTTGG
260 TTTCATGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * * * *
18525130 CCCCAAACTTGATAGACATGATCCTTGTATTTTTTTTGGGATGCAAAAAAAAATTGACCTAAAAA
325 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAA
*
18525195 CTCGAAGTGTCCAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTCTAGACACTTTAATGGC
390 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT-TAGACACTTTAATGGC
* *
18525259 TACTGGCAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTAAGTTCTTGAGGTTTGAT
454 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGAT
*
18525324 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCC
519 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * * * * * *
18525389 CTCCGCCCCCCCGATCACCGTAACCCCAATGCCACCGATCAGGTTCTCCGACGATGCTTCGATTA
584 C-CCGCCCCCCTGATCGCCGAAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGATGA
* * * * *
18525454 TGGTGCCCCGATGAAGAAAAAAATGGTACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAAC
648 TGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * * * * *
18525519 CCTCCGTTCGGTCCGATCTTTGACTAGGAATGAACTCCATATGCTTAGACT-GGAATGAACTCCG
713 CCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * **
18525583 TATGCCTAAGTCAACCTACGAAACGAGCGCGTGGGCGCTCAGCCGGCCAGAGGGGC-GAGATGTA
778 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAG-GATGCG
* * * * * * * *
18525647 CAAGCCGTGAATCGATCGGGTCCCCCTTTCCGTGCTATCGATCCTACTGCC
842 CAAGCCGGGGATCGATCGAGTCCCCCTCTGCGTGCTGTCGATCCTGCTACC
* * * * *
18525698 ACAACCCTC-GGTCTGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCAC-AAGCCAACTGA-
1 GCAACCCTCAGTTC-GG-CCGATCTTAGACTGGGAATGAACTCCGTATGC-CTAAGCCAACCGAT
* * * *
18525760 CAAA--A-CGAGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
63 GAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * *
18525822 AGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTGCATGTCAATGCCATTTTTATGGCTTG
128 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
* * *
18525887 TAAATTCATCCAATGGCCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
193 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* *
18525952 TTTTTCATGATTTTTGAAAC-TTTTATCGGTTCGGGATTTTTAAAAATTTTTTCGGAAGGAGTTT
258 TTTTTCATGATTTTTGAAACTTTTTAT-GGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * *
18526016 TGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAACATTCAGCTAA
322 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAA
* * * *
18526081 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGATACTTTAAC
387 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC-ATTTAGACACTTTAAT
* * * *
18526146 GGCTACTGGCAGCAAACTTGTAAAATCACAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTT
451 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTT
* * * *
18526211 GATGAGGGATAGGGGGACAAAATAAGGGCCAAGTACCAGAACCCATCACACATCATGTGCGCAC-
516 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * * * * *
18526275 CCCCCCGGCCCCCCTGATCGCCGGAACCCCAATGCTGCCGGTCAAGTTCTCTGACAATGCTACGG
581 CCCCCC-GCCCCCCTGATCGCCGAAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGA
* ** * * * *
18526340 CGATGGCACCCCGGTGAAGAAAAATACGACACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGC
645 TGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* **
18526405 AACCCTC-GATCCGGTCTGATCTTAGACTGGAAATGAACTTTGTATGCTTAGACTGGGAATGAAC
710 AACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * * *
18526469 TCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAACCGACCAGAGGGGTAGGAT
774 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGAT
* * *
18526534 GCGCAAGCCGAGGATCGATCGAGTCCCCCTCTGTGTGCTGTTGATCCTGCTACC
839 GCGCAAGCCGGGGATCGATCGAGTCCCCCTCTGCGTGCTGTCGATCCTGCTACC
* * * *
18526588 ACAACCCTCAG-TCTGATCCAATCTTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGAT
1 GCAACCCTCAGTTC-G-GCCGATC-TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
* * * * *
18526652 GAAACGA----GTGGGCGGACACTACGTCAGCCAGAGAGACCGGATGCGCAAGCTGTGGATCGAT
63 GAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * *
18526713 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATTCCATTTTTATGGCTTG
128 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
* * * *
18526778 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGACAGGACGACTCGTTTTCTC
193 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * *
18526843 TTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
258 TTTTTCATGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * * * *
18526908 GGGCACAAACATGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
323 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAA
* *
18526973 AATTCGAAGTGTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
388 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-AGACACTTTAATG
*
18527038 ACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG-AGAGTTCTCGAGGTTT
452 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTA-AGTTCTCGAGGTTT
* * * *
18527102 GATGAGGGATAGGGGGCCAATATAAGGACTAAGTACCAGTACCCATCGCAAATCATGTGCGCACA
516 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * *
18527167 CTCCCTCGGCTCCCCC-GATCACCGGAACCCTAATGCAGCCGGTCAAGTTCTCCGGCGATGCTCC
581 C-CCC-CCGC-CCCCCTGATCGCCGAAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCC
*
18527231 GATGATGGTGCCCCTG-TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG-TGG
643 GATGATGGTGCCCC-GATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-G
* ** * *
18527294 TCGCAACCCTCTTTTCGGTCTGATTTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
706 CCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * * *
18527359 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGTTCAGCTGGCCAGAAGTGCAG
771 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAG
** * * * *
18527424 GATGCGCAAGCCGGGGATCGGCCTG-GACCCCCTCTGCGTACTG-CTGATCTTGCTATC
836 GATGCGCAAGCCGGGGATCGATC-GAGTCCCCCTCTGCGTGCTGTC-GATCCTGCTACC
* * * * * *
18527481 GTAAACCTCTGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGATGA
1 GCAACCCTCAGTTCGG-CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
** * *
18527546 AACGAGCGGGCGGACGGGCGGACAGGCACTTTGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGG
65 AACGAGC--G-GG-CGGGC-G---GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
18527611 ATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
122 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
*
18527676 GGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
187 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* ** * * **
18527741 TTTTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTCCAAAAGG
252 TTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTCGGAAGG
* * * * *
18527806 ATTTTTTG---C---C--GGTAGACGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCA
317 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCA
*
18527863 GCTAAAAACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
382 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-AGACACT
* * *
18527928 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTTGG
446 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGA
* * *
18527992 GGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCAGCCATTGCACATCATGTGC
511 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
18528057 GCACACCCCCCGGCCCCCTCATCGCCAAAAGCAC-AATGCCGCCGGTCAGGTTCTCCGACGATGC
576 GCACACCCCCCGCCCCCCTGATCGCCGAAA-CCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGC
** * * * * *
18528121 TCCGACAATGGTGCCCCTGA-GAAGAAAAATGCGGCACCAGGACATGCCCTATCCCAACATGTGC
640 TCCGATGATGGTGCCCC-GATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * ** * * *
18528185 GGCCGTAACCCTTGGTTCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAA
704 TGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * ** *
18528250 TGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTTGGCCAGCGGGGC
769 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
** * * * * *
18528315 AGGATGCGCAAGTTGGGGATTGGTCGGGTCCCCTTCTGCATGCT
834 AGGATGCGCAAGCCGGGGATCGATCGAGTCCCCCTCTGCGTGCT
18528359 ACCGCAACCC
Statistics
Matches: 4790, Mismatches: 483, Indels: 158
0.88 0.09 0.03
Matches are distributed among these distances:
887 6 0.00
888 199 0.04
889 264 0.06
890 269 0.06
891 495 0.10
892 257 0.05
893 659 0.14
894 22 0.00
895 464 0.10
896 517 0.11
897 776 0.16
898 312 0.07
899 123 0.03
900 154 0.03
901 5 0.00
902 1 0.00
903 1 0.00
904 220 0.05
905 46 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
GCAACCCTCAGTTCGGCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
ACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCATGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGATGA
GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
CGCCCCCCTGATCGCCGAAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGATGATGG
TGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
CAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
CCGGGGATCGATCGAGTCCCCCTCTGCGTGCTGTCGATCCTGCTACC
Found at i:18526465 original size:26 final size:26
Alignment explanation
Indices: 18526425--18526477 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18526415 CCGGTCTGAT
*
18526425 CTTAGACTGGAAATGAACTTTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
*
18526451 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
18526477 C
1 C
18526478 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCTGTATG
Found at i:18527355 original size:26 final size:26
Alignment explanation
Indices: 18527319--18527370 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
18527309 CGGTCTGATT
18527319 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18527345 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18527371 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:18528240 original size:26 final size:26
Alignment explanation
Indices: 18528211--18528263 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18528201 TCGGTCCGAT
18528211 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
18528237 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
18528263 C
1 C
18528264 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:18529963 original size:26 final size:26
Alignment explanation
Indices: 18529927--18529979 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18529917 CCAGTCTGAT
18529927 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18529953 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18529979 C
1 C
18529980 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18533328 original size:26 final size:26
Alignment explanation
Indices: 18533292--18533342 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18533282 TGGTCCGATC
*
18533292 TTAGACTGGGAATGAACTTCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
18533318 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
18533343 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:18533352 original size:891 final size:890
Alignment explanation
Indices: 18530803--18534959 Score: 4641
Period size: 892 Copynumber: 4.6 Consensus size: 890
18530793 GAATCCCGAA
* *
18530803 ATGCCTAAGCCAAACGGACGAAACGAGC-GGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGA
1 ATGCCTAAG-C-AACCGACGAAATGAGCGGGGGCGGA-GGGCGGGCACTACGCCGGCCAGAGAGA
* * **
18530867 CAGGATACGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTAT
63 CAGGAT-GGCAAGC-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
18530932 GTGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTT
126 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* *
18530997 TCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTG-AAACTTTTTGCGGTTCGGGATTT
191 TCATGGCAAGACGACTCATTTTCTATTTTTCAC-ATTTTTGAAAACTTTGT-AGGTTCGGGATTT
* * *
18531061 TTTAAAATTTTTTCG-AAACGAGTTTT-GCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGT
254 TTTAAAATTTTTTCGAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCT
* * *
18531124 TGGCATGCACAAAAAATTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAA
319 TGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAA
* * * *
18531189 AATGTCCCTA-TTTCAGACACTTTAATGGGTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCT
383 AGTGTCCCCATTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * *
18531253 TTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCA
448 TTAAGGGGGTGTGAGTT-TCAAGGTTTGAT-AAGGATAGGGGGCCAATATAA-GGCCAAGTACCA
* * * * *
18531318 GCACCCATCACATATCATGTACGCACA-CCCCCGACCCCCCGATCGTCGGAACGCCAATGCCGCC
510 GCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCGAAAC-CCAATGCCACC
* *
18531382 GGT-AAGGTTCTCCAGTGATGCTCTGGCGGTGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
574 GGTCAA-GTTCTCGA-TGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* *
18531446 ATGCCTGAGCCCAACATGTGCTGTCGTAACCCTTGGTCTGGTCCGATCTTAGACTGAGAATGAAC
637 ATGCCTGAGCCCAACATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGAGAATGAAC
* *
18531511 TCCGTACGCTTGGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTGCAGG
702 TCCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGG
* * * * * *
18531576 CGCTCAGCCGGCTAGAAGGGCGGGAAGAGCAAGCCAGGGATTGATCGGGTCCCCCTCTACATGCT
767 CGCTCAGCCGGCCAGAAGGGCAGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTACGTGCT
* * * * *
18531641 GTCGA-CCTACTGCAGCAACCCTCGATCCGATCCGATCTTAAACTGAGAATGAACTCCGT
832 GTCGATCCTACTGCTGCAACCCTCG-TTCGATCCGATCTTAGATTGGGAATGAACTCCGT
* * * *
18531700 ATGCCTAAGTAAACCGATGAAATGAGCGGGCCGACGAATGGGCGGGCACTACGCCGGCCAGAGAG
1 ATGCCTAAG-CAACCGACGAAATGAGCGGG--GGCGGA-GGGCGGGCACTACGCCGGCCAGAGAG
* *
18531765 ACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTCTA
62 ACAGGATG-GCAAG-CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* * *
18531829 TG-GCCAATGCCATTTTTATGGGCTTGTAAATTCAT-CAATCGTCCCTTAACGCTTTCACGTG-A
125 CGTGCCAATGCCATTTTTAT-GGCTTGTAAATTCATACAATGGTCCCTTAA-GCCTTCACGTGAA
* * * * *
18531891 GTTTCATGGCAAGCACGACT--TGTTCT-GTTTT--CATGATTTG-AAACTTTTTCA-GTACGGG
188 GTTTCATGGCAAG-ACGACTCATTTTCTATTTTTCACAT-TTTTGAAAACTTTGT-AGGTTCGGG
* * *
18531949 ATTTTTTTTTAAATTTTTTCG-AAATGAGTTGTTCGG--CC-AACTTGGTAGATTGTGATCCTTG
250 A--TTTTTTAAAATTTTTTCGAAAAGGAGTT-TT-GGCCCCAAACTTGGTAGA-CGTGATCCTTG
* * *
18532010 TATTTTTGTTTGGCATGCAT-AAAAATTTCAGCTAAAAACTCAATAGATGTAC-AGATTTTGTGA
310 TATTTTT-CTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGA-AG-TGTACAAGATTTTGTGA
* *
18532073 CCATTTGAGAAAAG-GT-CCTA-TTTCAGACACTTTAATGACGGGGTACTGGCAGCAAACCTGTA
372 CCATTTGA-AAAAGTGTCCCCATTTTCAGACACTTTAAT----GGCTACTGGCAGCAAACCTGTA
* *
18532135 AAATCTCAAATGTCCTCTTTTAAAGGGGGTGTGAGTCTCAA-GTTTGATGAGGATA-GGGGCCAA
432 AAATCTCAAATG--CTC-TTT-AAGGGGGTGTGAGTTTCAAGGTTTGATAAGGATAGGGGGCCAA
* * *
18532198 TATAAAGCGGCCAAGTACCAGCACCCATCGTACATCATGTACGCA-ACACCCTCGACCCCCCCGA
493 TAT-AA--GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGA-CCCCCCGA
* * * *
18532262 TCGTCGGAAACCCAATTGCCGGTTCAGGTCAGGTTTCTCCGGTGATGCTCTGGCGATGGTGCCCC
553 TCGTC-GAAACCCAA-TGCC---ACCGGTCAAG-TTCT-CGATGATGCTCTGGCGATGGTGCCCC
* * * * *
18532327 GGCGAAGAAAAATGCGGCACTAGCACATGCCTGAGCCCAACATGTGTTGTCGCAACCCTTGCTCT
611 GACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAACATGTGCTGTCGCAACCCTCGGTCT
* *
18532392 GGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTGGACTGGGAATGAACTCCGTATGCCTAA
676 GGTCCGATCTTAGACTGAGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
18532457 GTCAACCCATGAAACGAGCATGCAGGCGCTCAGCCGGCTAGAAGGGCAGGATGCGCAAGCCATGG
741 GTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAAGGGCAGGATGCGCAAGCCAGGG
* * *
18532522 ATCGATCGGGT-CCCCTCTGCGTGCTGTCGATCCTACTG-TTCAACCGTCAGTTCGATCCG-TCT
806 ATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTACTGCTGCAACCCTC-GTTCGATCCGATCT
*
18532584 TAGATTTGGAATGAA-T-CGT
870 TAGATTGGGAATGAACTCCGT
* * * *
18532603 ATGCCTAAGCTA-CGACTAAATGAGCGGGGGCGGAGGGAGGGCACTACGCC-GCCAGA-AGA-GG
1 ATGCCTAAGCAACCGACGAAATGAGCGGGGGCGGAGGGCGGGCACTACGCCGGCCAGAGAGACAG
18532664 GATGGCAAGCGTGGATCGAACTAGAGGTGGTAGGTGGGTTTAGGGCACATCTTC-TA-TTCTGGC
66 GATGGCAAGCGTGGATCG-A-TAG-GGTGGTAGGTGGGTTTA-GGCACATCTTCATATTTCT-GC
* * *
18532727 GTG-C-ATGCCATTTTTTATGGCTTGTACATTC-TACATTGGTTCCTTAAGCCTTCA-GTCAGAA
126 GTGCCAATGCCA-TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT--GAA
* * * *
18532788 TGTTTC-TGGCACGACGACTCATTTTTTATTTTTCACATTTTTTGAAAACTGTTGT-GTTTCAGG
188 -GTTTCATGGCAAGACGACTCATTTTCTATTTTTCACA-TTTTTGAAAACT-TTGTAGGTTCGGG
* ** *
18532851 ATTGTTTAAAATTTTTTCGAAAAGTTGTTTTTGGCCCCAAACTTGGTAAGACATGATCCTTGTAT
250 ATTTTTTAAAATTTTTTCGAAAAGGAG-TTTTGGCCCCAAACTTGGT-AGACGTGATCCTTGTAT
* * * *
18532916 TTTT-TTGGCACGCATAAAAAAATTCAGCTAAAAAACTTTGAAGTGTACGAGATTTT-TGGCGCA
313 TTTTCTTGGCATGCATAAAAAAATTCAGCT-AAAAAC-TCGAAGTGTACAAGATTTTGTGAC-CA
* *
18532979 TTTGAAAAAGTGTCCTCATTTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGT-AAATCTCA
375 TTTGAAAAAGTGTCCCCATTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
18533043 AATGCTCTTTAAGGGGGTGTGAGTTTCAAGGTTTGATAAGGGATA-AGGGCCAATATAAGGCCAA
440 AATGCTCTTTAAGGGGGTGTGAGTTTCAAGGTTTGATAA-GGATAGGGGGCCAATATAAGGCCAA
* * *
18533107 GTACCAGCACCCATCGCATATCATGTGCGTACACCCCTCCTGGCCCCCCGATCGTCGAAACCCCA
504 GTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CC-GACCCCCCGATCGTCGAAA-CCCA
* * * * * *
18533172 ATGTCACCGGTCAAGTTCTCTGACGATGCTCTGGTGATGGTGCCTCGATGAAGAAAAATACGGCA
566 ATGCCACCGGTCAAGTTCTC-GATGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCA
* * * *
18533237 CCAGCACATGCCTGAGTCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGG
630 CCAGCACATGCCTGAGCCCAACATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGAG
* * * *
18533302 AATGAACTTCGTATGGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAATCCACT-AAACGAG
695 AATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-TGAAACGAG
* * * * **
18533366 CGTGCGGGCGCTCAGCCGACCAGAAGGGCGGGATACGCAAGCTGGGGATC-AGTCGGGTCCCCCT
759 CGTGCAGGCGCTCAGCCGGCCAGAAGGGCAGGATGCGCAAGCCAGGGATCGA-TCGGGTCCCCCT
** * * * * * * * * *
18533430 CTGTGTGCTATCGATCTTGCTGTTGCAACCCTCGGTCCAGTCTGATCTTCGACTAGGGAATGAAC
823 CTACGTGCTGTCGATCCTACTGCTGCAACCCTCGTTCGA-TCCGATCTTAGA-TTGGGAATGAAC
**
18533495 TTTGT
886 TCCGT
*
18533500 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCCGG-GTAGGCGGGCACTACGCCGGCCAGAGA
1 ATGCCTAAG-CAACCGACGAAATGAGCGGG-GG-CGGAG--GGCGGGCACTACGCCGGCCAGAGA
* * *
18533564 GACAGGATGCGTAAGCTATGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCT
61 GACAGGATG-GCAAGC-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*
18533629 GCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAG
124 GCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * * * * * *
18533694 TTTCATAGCAAGACGACTCGTTTTCTATTTTGCATGA-TTTTCAAAAATTTTTATGGTTTGGGAT
189 TTTCATGGCAAGACGACTCATTTTCTATTTTTCA-CATTTTTGAAAACTTTGTA-GGTTCGGGAT
* *
18533758 TTTTTAAAATTTTTTC-AAATGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
252 TTTTTAAAATTTTTTCGAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
** * * * * *
18533822 CTTGATATGCAAAAAAAAAATTCAGCAAAAAACTCGAAGTGTATAGGATTTTGTGACGATTTGAA
317 CTTGGCATGC-ATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-A
* *
18533887 AAAAGTGTCCCCATTTT-AGATACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGC
380 AAAAGTGTCCCCATTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
18533951 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATTAAGGATAGGGGGCCAATATATGGGCCAAGTA
445 TCTTTAAGGGGGTGTGAGTT-TCAAGGTTTGA-TAAGGATAGGGGGCCAATATA-AGGCCAAGTA
* **
18534016 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAGCCCTCCCGATCACCAGAAACCCAAT-
507 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGA-CCC-CCCGATCGTC-GAAACCCAATG
* * * * * *
18534080 --ACC-GTC--G--GTC-A-GGTTCTCCGGCGATGCT--CCAG-CGAAGAAAAATGCGGCACCAG
569 CCACCGGTCAAGTTCTCGATGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* * ** * * * * *
18534133 CACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGATCCGTTCTTAGAATGGGAATG
634 CACATGCCTGAGCCCAACATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGAGAATG
* *
18534198 AACTCCGTACGTTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
699 AACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC
* * * * * *
18534263 GGGCGCTCAGCAGGCCA-AAGGGGCAGGATGTGCAAGCCGGGGATCGACCGGGTCCCCCTCTATG
764 AGGCGCTCAGCCGGCCAGAA-GGGCAGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTACG
* * * * ** * *
18534327 TGCTGCCAAACCTACTGCTGCAACCCTCAG-TCTGGTCTAATCCTAGACTGGGAATGAACTCCGT
828 TGCTGTCGATCCTACTGCTGCAACCCTC-GTTC-GATCCGATCTTAGATTGGGAATGAACTCCGT
* *
18534391 ATGCCTAAGGCAACCGACGAAATGAGC--GGAC---GGGCGGGCACTACGCTGGCCAGAGAGACA
1 ATGCCTAA-GCAACCGACGAAATGAGCGGGGGCGGAGGGCGGGCACTACGCCGGCCAGAGAGACA
* * *
18534451 GGATTCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCAT
65 GGA-TGGCAAG-CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGT
* *
18534516 GCCAATGCCATTTTTATAG-TTGTAAATTCATTCAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
128 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * * * * *
18534580 CTGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTC-GAAATTTTT
193 ATGGCAAGACGACTCATTTTCTATTTTTCACATTTTTGAAAACTTTGTA-GGTTCGGGATTTTTT
* *
18534644 AAAATTTTTTTG-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGG
257 AAAATTTTTTCGAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGG
* *
18534708 CATGCATAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATATGAAATAAGT
322 CATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA-AAGT
*
18534773 GTCCCCA-TTACAGACTACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTCT
386 GTCCCCATTTTCAGAC-ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT-T
* *
18534837 TAAGGGGAGTGTGAGTCTT-GAGGTTTGAT-AGGATAGGGGGGCCAATATAAGGCCAAGTACCCG
449 TAAGGGG-GTGTGAGT-TTCAAGGTTTGATAAGGATA-GGGGGCCAATATAAGGCCAAGTACCAG
* *
18534900 CA-CCATTGCACATCATTGTGCGCACACCCCCCGACCCCCCGATCGTCGGAACCCAATGCC
511 CACCCATCGCACATCA-TGTGCGCACACCCCCCGACCCCCCGATCGTCGAAACCCAATGCC
18534960 GCCGAGTATG
Statistics
Matches: 2811, Mismatches: 302, Indels: 311
0.82 0.09 0.09
Matches are distributed among these distances:
877 9 0.00
878 8 0.00
879 20 0.01
880 96 0.03
881 129 0.05
882 105 0.04
883 109 0.04
884 3 0.00
885 1 0.00
887 1 0.00
888 1 0.00
889 1 0.00
890 2 0.00
891 242 0.09
892 262 0.09
893 38 0.01
894 70 0.02
895 132 0.05
896 155 0.06
897 118 0.04
898 130 0.05
899 113 0.04
900 78 0.03
901 70 0.02
902 160 0.06
903 177 0.06
904 84 0.03
905 130 0.05
906 125 0.04
907 241 0.09
908 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (890 bp):
ATGCCTAAGCAACCGACGAAATGAGCGGGGGCGGAGGGCGGGCACTACGCCGGCCAGAGAGACAG
GATGGCAAGCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
GCAAGACGACTCATTTTCTATTTTTCACATTTTTGAAAACTTTGTAGGTTCGGGATTTTTTAAAA
TTTTTTCGAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATG
CATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCC
CATTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
GTGTGAGTTTCAAGGTTTGATAAGGATAGGGGGCCAATATAAGGCCAAGTACCAGCACCCATCGC
ACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCGAAACCCAATGCCACCGGTCAAGTTCTC
GATGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAA
CATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGAGAATGAACTCCGTACGCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGGCCA
GAAGGGCAGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTACTGC
TGCAACCCTCGTTCGATCCGATCTTAGATTGGGAATGAACTCCGT
Found at i:18535814 original size:26 final size:26
Alignment explanation
Indices: 18535778--18535830 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18535768 CTGGCCCGAT
*
18535778 CTTAGACTGGGAATGTACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18535804 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18535830 C
1 C
18535831 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18537246 original size:26 final size:26
Alignment explanation
Indices: 18537217--18537269 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18537207 CCGGTCCGAT
18537217 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18537243 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18537269 C
1 C
18537270 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18538148 original size:26 final size:25
Alignment explanation
Indices: 18538097--18538151 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 25
18538087 CCGGTCTGAT
*
18538097 CTTAGATAGGAAAGAACTCCATATG
1 CTTAGATAGGAAAGAACTCCACATG
* **
18538122 CTTAGACTAGGAATGAACTCTGCATG
1 CTTAGA-TAGGAAAGAACTCCACATG
18538148 CTTA
1 CTTA
18538152 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (25 bp):
CTTAGATAGGAAAGAACTCCACATG
Found at i:18539016 original size:26 final size:26
Alignment explanation
Indices: 18538987--18539039 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18538977 CCGGTCCGAT
18538987 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
*
18539013 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
18539039 C
1 C
18539040 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:18539493 original size:907 final size:900
Alignment explanation
Indices: 18536568--18543531 Score: 8903
Period size: 904 Copynumber: 7.8 Consensus size: 900
18536558 GACGAAACGA
* * * *
18536568 GCGGGCACTACGTCGGCTAGAGAAACGGGATGCGCAAGCCGTGGATTGATAAGGTGGTAGGTGGG
1 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
18536633 ATTAGGCACATCTTCATTTTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
66 TTTAGGCACATCTTCATATTTGTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
18536698 GTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGGTTTCTATTTTTCATGATTTTT
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
** * * * *
18536763 GAAACTTTTTGTGTTTCGGGATTTTTTAAAATTTTTTCGTTAA-GAGTTTTGG-TCACAAAGTTG
196 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG-GAAGGAGTTTTGGCCCA-AAACTTG
* *
18536826 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAGAAACTCAGCTAAAAACTC-AATGTGT
259 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA-GTGT
*
18536890 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCAGC
323 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
18536955 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGCTATGAGTTCTCGAGGTTTGATGAGGGATAGG
388 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
18537020 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA--CCCCC--CCCC
453 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
* * * * *
18537081 CCGATCGTCGGAACCCCAATGTCGTCGGTTAGGTTCTCCGGCGATGGTCCGGCGATGGTGCCCCG
518 CCGATCGTCGGAACCCTAATG-CCTCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCG
* * ***
18537146 ACGAAGATAAATGCGGCACCAGCACATGCCC-AGCCCAACATGTGCTGTTACAACCCTCGGTCCG
582 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
18537210 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAG
647 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAG
* * * * * * *
18537275 TCAACCCATGAAACGAGAGTGCAGGCGCTCAGTCGGCCAGAGAGGTGGGATGCGCAAG-TGGGGA
712 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * * * ** *
18537339 TCAGTCGGGT-CCCTTTTGCATGCTGCTGATCTTGCTATCGCAACCCTCAG-TCTAATTTGATCT
777 TCGGTCGGGTCCCCCTCTGCGTG-TGCCGATCCTGCTACCGCAACCCTCAGTTCTGGTCTGATCT
* *
18537402 TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--ATGA---GCGGGCGG
841 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGACGGGCGGGCGG
* * * * * * *
18537456 GTGGGCACTACGTCGACTAGAAAGACGGGATGCACAAGCTGTGGATCGATAGGGTGGGAGGTGGG
1 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
18537521 TTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGTTTGTAAATTCATACAATG
66 TTTAGGCACATCTTCATATTTGTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * *
18537586 GTCCTTTAACCCTTCACGTGAAATTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* ** * * * *
18537651 GAAAGTTTTTACGGTTCGATATTTTTTAAAATTTTTTTGGAATGAGTTTTGGCCCCAAACATGGT
196 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAAACTTGGT
* * * *
18537716 AGAGGTGATCCTTGTATTTTTTTTGGCATGCTA-AAAACATTTCAGCTAAAAACTCGAAGTGTAC
261 AGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
18537780 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAA
325 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* ** * **
18537845 ACCTGTAAAATCTCAAATGCTCTTTCAGGGGGCATGAGTTCTTGAGGTTTGACAAGGGATAGGGG
390 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* ** *
18537910 GCCAATATAAGGGCCAAGTACCAACGGCCATCGTACAT-ATGTGCGCACACCCCCCCGGCCCCCC
455 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
* * * * *
18537974 GATAGCCGGAACCCCAATGCCGCGGTTAGGTTCT-C--C---G----A-CGATGGTGCCCCGACG
520 GATCGTCGGAACCCTAATGCCTCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCGACG
* ** * * * * *
18538028 AAGAAAAATGCAGCTTCAGCACATGCCCAAGCCCAACTTGTGCTGCCACATCCCTCGGTCCGGTC
585 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * * * * * *
18538093 TGATCTTAGA-TAGGAAAGAACTCCATATGCTTAGACTAGGAATGAACTCTGCATGCTTAAGTCA
650 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
* * * * *
18538157 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCAGGATGCACAAGCCAGGGATCA
715 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * *
18538222 GCCGGGTCCCCCTCTACGTGTCACCGATCCTACTACCGCAACCCTCCG-TCTGGTCTGATCTTAG
780 GTCGGGTCCCCCTCTGCGTGT-GCCGATCCTGCTACCGCAACCCTCAGTTCTGGTCTGATCTTAG
* *
18538286 ATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--A----CGGGTGG
844 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGACGGGCGGGCGG
*
18538337 GCGGG-----CGTCGGCCAGAGAGACGGTATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
1 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
18538397 TTTAGGCAAATCTTCATATTTGTGCGTG-CAATACCATTTTTATGGCTTGTAAATTCATACAATG
66 TTTAGGCACATCTTCATATTTGTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
18538461 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTTCATGATTTTT
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
** * *
18538526 GAAACTTTTTGTGGTTCGGGATTTTTTAAAAGTTTTTCGAAAGGAGTTTTGGCCCAAAACTTGGT
196 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAAACTTGGT
* * * * *
18538591 AGATGTTATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAACCTCGAAGAGTACA
261 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
18538656 AGATTTTGTAACCATTTAAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
326 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
18538721 CCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGGATAGAGGG
391 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
18538786 CCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCACCCGGCCCCCT
456 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCGGCCCCC-
* * ** * *
18538851 CGATCGTC-G-ACACCTCAATACCTCCTGTCAGGTTCTCCGATGATGCCCCAGTGATGGTGCCCC
519 CGATCGTCGGAAC-CCT-AATGCCT-CGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCC
* * * * * *
18538914 GGCAAAGAAAAATGCGGTACCAACACATGTCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCC
581 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* *
18538979 GGTCCGATCTTAGACTGCGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
646 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAA
* * *
18539044 GTCAACCCATGAAACGACCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
711 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * *
18539109 ATCGGCCGGGTCCCCTTCTGCGTGTGGCCAATCCTGCTGCCGCAACCCTCGGTTC-GGTCTGATC
776 ATCGGTCGGGTCCCCCTCTGCGTGT-GCCGATCCTGCTACCGCAACCCTCAGTTCTGGTCTGATC
* * * *
18539173 TTAGACT-GGAATGAACTCTGTATGCCTAAGCCTACTGACAAAACGAGCGGACGGGCGGGCGGAC
840 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GGACGGGC--G-GG-C
18539237 GG
899 GG
* * * *
18539239 GTGGGCACTAAGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
1 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* ** *
18539304 TTTAGGCACATCTTCATATTTCTGTGTGTCAATGCCA-TTTTATGGCTTGTAAATTCATACAATG
66 TTTAGGCACATCTTCATATTTGTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
18539368 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACAATTTTT
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * * **
18539433 CAAACTTTTTGCGGTTCGGGATGTTTTAAAATTTTTTCGAAAGGAGTGTTGGTGCAAAACTTGGT
196 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAAACTTGGT
* * * *
18539498 AGACATGATCCTTGTATTTTTGTTGGCATGCCCAAAAAAATTCAGCTAAAAACTCAAAATGTACA
261 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
18539563 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAA
326 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
** *
18539628 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGCATGAGTTCTCTAGGTTTGATGAGGGATAGGGGG
391 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
** * *
18539693 CCAATATAAGGGCCAAGTACCAGTGCCCATCGTACAT-ACGTGCGCACACCCCCCCGGCCCCCCG
456 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCG
* * * * ** *
18539757 ATAG-CGGAACCCAAATGCCGCCGG-CTAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCTTGGC
521 ATCGTCGGAACCCTAATGCC-TCGGTC-AGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCGAC
* * * *
18539820 GAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCATCCCTCGGTTCTGT
584 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* * * *
18539885 CTGATCCTAGACTGGGAAAGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTC
649 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
* * * * * *
18539950 AACCCACGGAATGAGCATGCGGGCGCTCAGTCGGCCAGAGGGTCTGGATGCGCAAGCCGGGGATC
714 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * *
18540015 AGTCGGGTCCCCCTTTGCGTGTTACCGATCCTGCTATCGTAACCCTC-GATCTGGTCCGATCTTA
779 GGTCGGGTCCCCCTCTGCGTG-TGCCGATCCTGCTACCGCAACCCTCAGTTCTGGTCTGATCTTA
* *
18540079 GACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGGCG
843 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GGACGGGCGGGC--G-G
* * *
18540142 GCGGGCACTACGTCGGCCAGAGAGACGGTATGCGCAAGCAGTGGATCGATAGGGTGGGAGGTGGG
1 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * **
18540207 TTTGGGCACATCTGCATATTTGTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATGATG
66 TTTAGGCACATCTTCATATTTGTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
18540272 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* *
18540337 GAAACTTTTTACGATTCGGGATTTTTTAAAAGTTTTTCGGAAGGAGTTTTGGCCCAAAACTTGGT
196 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAAACTTGGT
* ** * * *
18540402 AGACGTGATCTTTGTATTTTTGTTGGTGTGCGCAAAAAAATTCAGCTAAAACCTCGAAGAGTACA
261 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
** * *
18540467 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCAAGTCAGACACATTAATTGCTACTGGCAGCAAA
326 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
18540532 CCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
391 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
18540597 CCAATATAAGGGCCAAGTACCAGCACCCATGGCACATCATGTGCACACACCCCCCCGGCCCCCCC
456 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCC
** * ** *
18540662 GATCCCCGGAACCCTAATGCCGTCGGTCAGGTTCCCCAACGAAGCTCCAGCGATGGTGCCCCGAC
520 GATCGTCGGAACCCTAATGCC-TCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCGAC
* * * *
18540727 GAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTTCTGCCGCAACCCTCGGTCTGAT
584 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
*
18540792 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-TCGTATGCCTAAGT
649 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCT-GTATGCCTAAGT
* * * * * * *
18540856 GAACCCACGAAACAACCGTGCGGGCGCTCAG-CGGCCAGAGCGACGGGATGCTCAAGACGGGGAT
713 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
** * * * * * *
18540920 CGAACGGGTCCCCCTCTACGTTCTACCGATCCTACTACCGCAACCCTC-GATCTGATCTGATCTT
778 CGGTCGGGTCCCCCTCTGCG-TGTGCCGATCCTGCTACCGCAACCCTCAGTTCTGGTCTGATCTT
* *
18540984 AGACTGGGAATGAACTCCATATGCCTAAGCCAATCGACGAAAC-A--A---GCGGGCGG
842 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGACGGGCGGGCGG
* * * * * *
18541037 GCGGGCACTACGTCGACGAGAGAGATGGTATGCGCAAGTCGTGGATCGATAAGGTGGTAGGTGGG
1 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
18541102 TTTAGGCACATCTTCATATTTGTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
66 TTTAGGCACATCTTCATATTTGTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
18541167 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC-CAGTTTTCTATTTTTCATGATTTT
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-GTTTTCTATTTTTCACGATTTT
* *** * * *
18541231 TGAAACTTTTTATGGTTCAAAATTTTTTAAAATTTTTTCTGAAGGATTTTTGGCCCCAAACTTGG
195 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAAACTTGG
* * * *
18541296 TAGACATGATCATTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCTAAGTGTAC
260 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
18541361 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGAAGCAA
325 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
18541426 ACCTGTAAAATCTCAACTGCTCTTTAA-GGGGTGTGAGTTCGC-AGGGTTTGATGAGGGATATGG
390 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGG
* *
18541489 GGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCACACACCCCCCTCGGCCCC
454 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGCCCC
* * ** * * *
18541554 CCGATCGTCGGAACCCTAATGCCATCGGTAAGGTTCTCTGATGATGCTCCAGTGATGGTGCCTCT
518 CCGATCGTCGGAACCCTAATGCC-TCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCG
* * * **
18541619 ACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAGCCCTCAATCCG
582 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* * *
18541684 GTCCGATCTTAGACTGGGAATGAACTTCGTAAGCTTAGACTGGGAATGAACTATGTATGCCTAAG
647 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAG
* * * ** * **
18541749 TCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGTCAGAAAGACGACATGCGCAAGCCGGGGA
712 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * ** **
18541814 TCGGTCGGGTTCCCCTCTACGTGCTGCAGATCTTGCTATTGCAACCCTCAGTT-TGGTCCAATCT
777 TCGGTCGGGTCCCCCTCTGCGTG-TGCCGATCCTGCTACCGCAACCCTCAGTTCTGGTCTGATCT
* **
18541878 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGAGCAAGCGG
841 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GGACGGGCGGGCGG
* * * * * *
18541940 GCGGGCACTCCGCCGGCCAGAGAGATGGGATACGCAAGCTGTGGAACGATAGGGTGGTAGGTGGG
1 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
18542005 TTTAGGCAAATCTTTATATTTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGT
66 TTTAGGCACATCTTCATA-TTTGTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
18542070 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGCCGACTCGTTTTCTATTTTTCACAATTTT
130 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
** * * *
18542135 TGAAACTTTTTACGGTTCAAGATTTTTTAAAAATTTTTCGGATGGAGTTTTTG-CCACAAACTTG
195 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCA-AAACTTG
* * * * *
18542199 GTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGATAAAAAATCAAAGTGTA
259 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * * *
18542264 CAAGATTTTGTGGCCATTTGAAAAAATTGTCCCCATATCAAACACTTTAATGGCTACTGGCAGCA
324 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * *
18542329 AACCTGTAAAATCCCAAATGCTCTTTATGGGGGGGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
389 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
** ** *
18542394 GGCCAATATAAGGGCCAAGTACCAAAAGTCATCCCACATCATGTGCGCACACCCCCCCGGCCCTC
454 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC-C
* *
18542459 CCGATCGCCAGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGCTCCGACG
518 CCGATCGTCGGAACCCTAATGCC-TCGGTCAGGTTCTCCGGCGATGCT-C--C-A------G-CG
* * * *
18542524 ATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGTAA
571 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * ** * * * * *
18542589 CCCTCGGTCTGATATGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGAGTGAACGCC
636 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCT
* * * **
18542654 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCCGACGCTCAGCCGACCAGAGGGGCGAAATGCG
701 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * *
18542719 CAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTACTGTCGATCCTACTACCGTAACCCTCAG-TC
766 CAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGT-GTGCCGATCCTGCTACCGCAACCCTCAGTTC
* * * *
18542783 CGGTCTAATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AAGA-GGGC
830 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGACGGGC
18542846 GGGCGG
895 GGGCGG
** *
18542852 GCAAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGG
1 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
18542917 TTTAGGCACA-CGTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAC
66 TTTAGGCACATC-TTCATATTTGTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * * *
18542981 CGTCCCTTAAGCTTTCACGTGAAGTTTGATGGGAAGACGACTCATTTTCTATTTTTCACGATTTT
130 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * *
18543046 GGAAACCTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGA
195 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAAACTTGG
* *
18543111 TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTAC
260 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
18543176 AAGATTTTATGACCATTTGAAAAAAGTGACCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
325 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
18543241 ACCTGTAAAATGTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGACGTTTGATGAGGGATAGGGG
390 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
18543306 GCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCATA-CCCCTCGGCCCCCC
455 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCC
* * * * *
18543370 CGATCGTCGGAACCCCAATG-TTGCCGGTCAAGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCG
519 CGATCGTCGGAACCCTAATGCCT--CGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCG
*** * * * * * *
18543434 TTAAAGAAAAATGTGGCACCAGCACATGCCCAAGCCTAGCATGTGCTAG-CACAACCCTTGGTCT
582 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-GCCGCAACCCTCGGTCC
*
18543498 GGTCCGATCTTA-ACTGAGAATGAACTCCGTATGC
646 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
18543532 CTAAGCCAAC
Statistics
Matches: 5289, Mismatches: 677, Indels: 210
0.86 0.11 0.03
Matches are distributed among these distances:
874 1 0.00
875 352 0.07
876 90 0.02
877 13 0.00
878 11 0.00
879 144 0.03
880 56 0.01
881 86 0.02
882 3 0.00
884 2 0.00
885 1 0.00
887 14 0.00
888 432 0.08
889 11 0.00
890 123 0.02
891 181 0.03
892 2 0.00
893 1 0.00
894 291 0.06
895 493 0.09
896 4 0.00
898 26 0.00
899 75 0.01
900 4 0.00
901 4 0.00
902 12 0.00
903 431 0.08
904 714 0.13
905 155 0.03
906 145 0.03
907 621 0.12
908 10 0.00
909 2 0.00
910 47 0.01
911 377 0.07
912 79 0.01
913 2 0.00
915 3 0.00
916 271 0.05
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTGTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAAACTTGGT
AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCG
ATCGTCGGAACCCTAATGCCTCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCGACGA
AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
TCGGGTCCCCCTCTGCGTGTGCCGATCCTGCTACCGCAACCCTCAGTTCTGGTCTGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGACGGGCGGGCGG
Found at i:18539928 original size:26 final size:26
Alignment explanation
Indices: 18539892--18539942 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18539882 TGTCTGATCC
*
18539892 TAGACTGGGAAAGAACTCCGTATGCT
1 TAGACTAGGAAAGAACTCCGTATGCT
* *
18539918 TAGACTAGGAATGAACTCTGTATGC
1 TAGACTAGGAAAGAACTCCGTATGC
18539943 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAAAGAACTCCGTATGCT
Found at i:18540833 original size:26 final size:26
Alignment explanation
Indices: 18540797--18540849 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18540787 CTGATCTGAT
18540797 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18540823 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18540849 C
1 C
18540850 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18542510 original size:11 final size:11
Alignment explanation
Indices: 18542494--18542526 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
18542484 CGGTCAGGTT
18542494 CTCCGGCGATG
1 CTCCGGCGATG
18542505 CTCCGGCGATG
1 CTCCGGCGATG
*
18542516 CTCCGACGATG
1 CTCCGGCGATG
18542527 GTGCCCCGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.12, C:0.36, G:0.33, T:0.18
Consensus pattern (11 bp):
CTCCGGCGATG
Found at i:18542639 original size:26 final size:26
Alignment explanation
Indices: 18542607--18542659 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18542597 CTGATATGAT
**
18542607 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACGCCGTATG
* *
18542633 CTTAGACTGGGAGTGAACGCCGTATG
1 CTTAGACTAGGAATGAACGCCGTATG
18542659 C
1 C
18542660 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACGCCGTATG
Found at i:18545094 original size:26 final size:26
Alignment explanation
Indices: 18545058--18545107 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
18545048 GTCTGATCTC
18545058 AGACTGGGAATGAACTGT-GTATGCTT
1 AGACTGGGAATGAAC-GTCGTATGCTT
18545084 AGACTGGGAATGAACGTCGTATGC
1 AGACTGGGAATGAACGTCGTATGC
18545108 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.28, C:0.14, G:0.32, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACGTCGTATGCTT
Found at i:18545553 original size:879 final size:871
Alignment explanation
Indices: 18543483--18546700 Score: 3971
Period size: 859 Copynumber: 3.7 Consensus size: 871
18543473 CATGTGCTAG
* * *
18543483 CACAACCCTTGGTCTGGTCCGATCTTA-ACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACG
1 CACAACCCTCGGTCCGGTCCGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * *
18543547 AAACGAGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGAT-
66 AAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * * *
18543611 AGGTTCGTAGGTGAGTTTTGGCACATCTTCATATTTGTGCATGCCAATGCCATTTTTATGGCTTG
131 AGG-TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
18543676 TAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTA
195 TAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTA
*
18543741 TTTTTCATGATTTTCAAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAAATTT
260 TTTTTCATGATTTTCAAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAATTTT
*
18543806 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCTTGCACAAAAAAATTCAGCTAAA
325 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
* * * *
18543871 AACTCAAAGTATACAAGATTTTGTGTCCATTTGAAAAATGTGTCCGCATTTCAGACACTTTAATG
390 AACTCAAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATG
* * *
18543936 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGAGGTGTGAGTTCTGGAGATTTG
455 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTG
* * **
18544001 ATGAGGGATAGGGGGCCAATATAAGAGG-CAAGTACCAGCACCCATCACACATCATGTGTGCGTA
520 ATGAGGGATAGGGGGCCAATATAAG-GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * *
18544065 CCCCCCCGAGCACCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCTGGCGATGGTGCC
584 CCCCCCCGA--TCCCCGA-------AACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGGTGCC
* ** ** *
18544130 CCGACGAAGAAAAATGTGGCACCGACACATGCCCGATTCCAGCATGTGCCACTGCAA-CC--ATC
640 CCGACGAAGAAAAATGTGGCACAG-CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTGATC
*
18544192 GGTCTGA--TC---C---G-AT----TTTA-G----G-CTGGGAATGAACTCCGTATGCCTAAGT
704 AGTCTGATCTCAGACTGGGAATGAACTTTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
18544238 CAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGATGTGAAAGTCGGGGAT
769 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * *
18544303 CGGTCGGGTCCCCCTTTGCGTCCTGCCGATCTTACTGC
834 CGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGC
* *
18544341 CACAACCCTCGGTCCGGTCTGATCTTAGACTAAGAATAAACTCCGTATGCCTAAGCCAACCGACG
1 CACAACCCTCGGTCCGGTCCGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCGACG
* ** * ** * *
18544406 AAATGAGCGGATGGGTGGGCACTACGTCGGCCAGAGAGATAGGATGCGTAAGCCGAGGATCGATA
66 AAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* *
18544471 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAATGCCATTTTTATGGCTTGT
131 AGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* * *
18544536 GAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTAT
196 AAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTAT
* ** * *
18544601 TTTTCATGATTTTTC-AAACTTTTTACGGTTCCAGATTTTTTAAAATTTTTTCAGAAGGATTTTT
261 TTTTCATGA-TTTTCAAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAATTTT
* * *
18544665 GGCCCCAAACATGGTAGACGTGATCCTTGTCTTTTTTTTGGCATGCATAAAAAAATTCAGCTAAA
325 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
* * *
18544730 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGATACTTTAATG
390 AACTCAAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATG
*
18544795 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
455 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTG
* * * * * * *
18544860 ATGAGGGATAAGGGGCCAAAATACGGGCCAAGTACTAACACCTAGCGCACATCATGTGCGCACAC
520 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* *
18544925 CCCCCCGATCCCCGAAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGGTGCCTCGACAAAGA
585 CCCCCCGATCCCCGAAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGA
** ** * *
18544990 AAAATACGTTACTAGCACTTGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCTAGTCTGAT
650 AAAATGTGGCAC-AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC-TGATC-AGTCTGAT
18545055 CTCAGACTGGGAATGAACTGTGTATGCTTAGACTGGGAATGAACGT-CGTATGCCTAAGTCAACC
712 CTCAGACTGGGAATGAACT-T-TATGCTTAGACTGGGAATGAAC-TCCGTATGCCTAAGTCAACC
* *
18545119 CATGAAACGAGCGTGCGGGCGCTCATCCGACCAGAGGGG-GGGATGCGCAAGCCGGGGATCGGTC
774 CACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC
* *
18545183 AGGTCCCCCTCTACGTGCTGCCGATCCTACTGC
839 GGGTCCCCCTCTGCGTGCTGCCGATCCTACTGC
* * * ** *
18545216 CGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG
1 CACAACCCTCGGTCCGGTCCGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCGACG
* ** * *
18545281 AAACGAGCGGGCGAGCGGGCGAGCACTACGTCGGTTAGAGAGGCGGGATGCGCAAGCCGTGGACC
66 AAACGAGC--G-G-GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* *
18545346 GATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
127 GATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
18545411 TTGTAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTT
192 TTGTAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTT
18545476 CTATTTTTCATGATTTTCAAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAAT
257 CTATTTTTCATGATTTTCAAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAAT
*
18545541 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCTTGCACAAAAAAATTCAGCT
322 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
* * *
18545606 AAAAACTCAAAGTATACAAGATTTTGTGTCCATTTGAAAAATGTGTCCCCATTTCAGACACTTTA
387 AAAAACTCAAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTA
* *
18545671 ATGACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGAT
452 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGAT
* *
18545736 TTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCA
517 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * *
18545801 CAGCCCCCCGGCCCCCCCGATCACCGTAACCCCAATGCCGTCGGTACCCTAAAGCATCCGATCAG
582 CA---------CCCCCCCGATCCCCGAAACCCCAA---------TA-CC----G---CCGGTCAG
* * *
18545866 GTTCTCCGGCGAGGCTCTGACGATGGTGCCCCGACGAAGAAAACTGTGGCACGAGCACATGTCGG
621 GTTCT-C--C---G----G-CGATGGTGCCCCGACGAAGAAAAATGTGGCAC-AGCACATGCCCG
* * * * * *
18545931 AGCCCACCATGTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATCT
674 AGCCCAGCATGTGCTGCCGCAACCCT-GATCAG-TCTGATCTCAGACTGGGAATGAACT--TTAT
*
18545996 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
735 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
18546061 CTTG-CCAGAGGGGCAGGATACGCAAGCTGAGGATTGGTCGGGTCCCCCTCTGCGTGCTACCGAT
800 C-CGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGAT
* *
18546125 CCTGCTAC
864 CCTACTGC
* * * * * *
18546133 CACAACCCTCGATCCGGTCTGATCTTAAACTAGGAATGAAGTCCGTATGCCTAAGCCAACTGACG
1 CACAACCCTCGGTCCGGTCCGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * *
18546198 AAATGA----GCGGGCGGGCACTACGTCGGCCAGGGAGACGGGAT-CG-ATAG-GGTGG-T---T
66 AAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA-AGCCGTGGATCGAT
18546252 ----T-GT--GT--GTTTAGGCACATCTTCATATTTTCTGCATGCCAATGCCATTTTTATGGCTT
130 AAGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCATGCCAATGCCATTTTTATGGCTT
* * * *
18546308 GAAAATTCATACAATGGTCCCTTAA-CCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCT
194 GTAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCT
* ** * * **
18546372 GTTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGGGTTT
259 ATTTTTCATGATTTTCAAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAATTT
* ** * *
18546437 TGGCCCCTAACTTCATAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAACATTCAGCTAA
324 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
* * * * *
18546502 AAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGCATCCCCATTTTAGACACTTTAAT
389 AAACTCAAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAAT
* * * *
18546567 GGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAGGTTT
454 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTT
*
18546632 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACA
519 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
18546697 CCCC
584 CCCC
18546701 ACCGGCCCCC
Statistics
Matches: 2047, Mismatches: 231, Indels: 137
0.85 0.10 0.06
Matches are distributed among these distances:
850 78 0.04
851 3 0.00
854 2 0.00
855 6 0.00
857 8 0.00
858 26 0.01
859 499 0.24
860 8 0.00
863 1 0.00
864 2 0.00
868 1 0.00
869 1 0.00
870 2 0.00
871 1 0.00
875 115 0.06
876 66 0.03
877 2 0.00
878 6 0.00
879 457 0.22
885 4 0.00
888 22 0.01
894 350 0.17
895 53 0.03
896 2 0.00
897 2 0.00
898 4 0.00
899 1 0.00
902 1 0.00
903 1 0.00
905 12 0.01
906 1 0.00
907 5 0.00
908 5 0.00
909 30 0.01
911 1 0.00
915 4 0.00
916 156 0.08
917 109 0.05
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (871 bp):
CACAACCCTCGGTCCGGTCCGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCGACG
AAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
AGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTAT
TTTTCATGATTTTCAAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAATTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCAAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCCGATCCCCGAAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAA
AAATGTGGCACAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTGATCAGTCTGATCTCA
GACTGGGAATGAACTTTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCC
CCTCTGCGTGCTGCCGATCCTACTGC
Found at i:18546523 original size:894 final size:906
Alignment explanation
Indices: 18545014--18546716 Score: 2436
Period size: 894 Copynumber: 1.9 Consensus size: 906
18545004 GCACTTGCCC
* * * * ***
18545014 GAGCCCAGCATGTGCTGCCGCAACCCTTGGTCTAGTCTGATCTCAGACTGGGAATGAACTGTGTA
1 GAGCCCACCATGTGCTGCCGCAACCCTCGATCGAGTCTGATCTCAGACTGGGAATGAACTCCATA
* *
18545079 TGCTTAGACTGGGAATGAACGTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
66 TGCTTAGACTGGGAATGAACGTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * *
18545144 TCCGACCAGAGGGGGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTACGTGCTGCCGATC
131 GCCGACCAGAGGGGAGGATACGCAAGCCGAGGATCGGTCAGGTCCCCCTCTACGTGCTACCGATC
* * * * * *
18545209 CTACTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
196 CTACTACCACAACCCTCGATCCGGTCCAATCTTAAACTAGGAATGAACTCCGTATGCCTAAGCCA
* *
18545274 ACCGATGAAACGAGCGGGCGAGCGGGCGAGCACTACGTCGGTTAGAGAGGCGGGATGCGCAAGCC
261 ACCGACGAAACGAGC-GGCGAGC-GGCGAGCACTACGTCGG-T-GACA-G-GGGA--CG-AA-CC
*
18545339 GTGGACCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
316 GTGGACCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
* *
18545404 TTATGGCTTGTAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGACGAC
381 TTATGGCTTGAAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGACAAC
*
18545469 TTGTTTTCTATTTTTCATGATTTTCAAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
446 TCGTTTTCTATTTTTCATGATTTTCAAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
** * *
18545534 AAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCTTGCACAAAAAAA
511 AAGGAATTTTGGCCCCAAACTTCATAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAA
* * **
18545599 TTCAGCTAAAAACTCAAAGTATACAAGATTTTGTGTCCATTTGAAAAATGTGTCCCCATTTCAGA
576 TTCAGCTAAAAACTCAAAGTATACAAGATTTTGTGACCATTTGAAAAAAGCATCCCCATTTCAGA
*
18545664 CACTTTAATGACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTTGTGAGTT
641 CACTTTAATGACTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGAGGG-TGTGAGTT
*
18545728 CTCGAGATTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATTGCACATCA
705 CTCGAGATTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCA
18545793 TGTGCGCACAGCCCC-CCGGCCCCCCCGATCACCGTAACCCCAATGCCGTCGGTACCCTAAAGCA
770 TGTGCGCACA-CCCCACCGGCCCCCCCGATCACCGTAACCCCAATGCCGTCGGTACCCTAAAGCA
18545857 TCCGATCAGGTTCTCCGGCGAGGCTCTGACGATGGTGCCCCGACGAAGAAAACTGTGGCACGAGC
834 TCCGATCAGGTTCTCCGGCGAGGCTCTGACGATGGTGCCCCGACGAAGAAAACTGTGGCACGAGC
18545922 ACATGTCG
899 ACATGTCG
* *
18545930 GAGCCCACCATGTGCTGTCGCAACCCTCGATCCGA-TCTGATCTTAGACTGGGAATGAACTCCAT
1 GAGCCCACCATGTGCTGCCGCAACCCTCGAT-CGAGTCTGATCTCAGACTGGGAATGAACTCCAT
*
18545994 CTGCTTAGACTGGGAATGAAC-TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACT
65 ATGCTTAGACTGGGAATGAACGT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACT
* * * * *
18546058 CAGCTTG-CCAGAGGGGCAGGATACGCAAGCTGAGGATTGGTCGGGTCCCCCTCTGCGTGCTACC
129 CAGC-CGACCAGAGGGG-AGGATACGCAAGCCGAGGATCGGTCAGGTCCCCCTCTACGTGCTACC
* ** *
18546122 GATCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAAACTAGGAATGAAGTCCGTATGCCTAA
192 GATCCTACTACCACAACCCTCGATCCGGTCCAATCTTAAACTAGGAATGAACTCCGTATGCCTAA
* * * *
18546187 GCCAACTGACGAAATGAGC-G-G-GC-G-G-GCACTACGTC-G-GCCA-GGGA-G-A-CG-GGAT
257 GCCAACCGACGAAACGAGCGGCGAGCGGCGAGCACTACGTCGGTGACAGGGGACGAACCGTGGAC
* ** * *
18546239 CGATAGGGTGGTTTGTGTGTTTAGGCACATCTTCATATTTTCTGCATGCCAATGCCATTTTTATG
322 CGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTACATGCCAATGCCATTTTTATG
*
18546304 GCTTGAAAATTCATACAATGGTCCCTTAA-CCTTCATGTGAAGTTTCATGGCAAGACAACTCGTT
386 GCTTGAAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTT
* ** * * *
18546368 TTCTGTTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGG
451 TTCTATTTTTCATGATTTTCAAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * *
18546433 GTTTTGGCCCCTAACTTCATAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAACATTCAG
516 ATTTTGGCCCCAAACTTCATAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAG
* * * *
18546498 CTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGCATCCCCATTTTAGACACTT
581 CTAAAAACTCAAAGTATACAAGATTTTGTGACCATTTGAAAAAAGCATCCCCATTTCAGACACTT
* *
18546563 TAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAG
646 TAATGACTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAG
* * *
18546628 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCG
711 ATTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
18546693 CACACCCCACCGGCCCCCCCGATC
776 CACACCCCACCGGCCCCCCCGATC
18546717 GTCGGAACCC
Statistics
Matches: 704, Mismatches: 76, Indels: 36
0.86 0.09 0.04
Matches are distributed among these distances:
893 4 0.01
894 380 0.54
895 58 0.08
897 1 0.00
899 1 0.00
902 4 0.01
905 2 0.00
908 1 0.00
909 10 0.01
910 1 0.00
911 1 0.00
913 2 0.00
914 1 0.00
915 2 0.00
916 123 0.17
917 113 0.16
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (906 bp):
GAGCCCACCATGTGCTGCCGCAACCCTCGATCGAGTCTGATCTCAGACTGGGAATGAACTCCATA
TGCTTAGACTGGGAATGAACGTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCA
GCCGACCAGAGGGGAGGATACGCAAGCCGAGGATCGGTCAGGTCCCCCTCTACGTGCTACCGATC
CTACTACCACAACCCTCGATCCGGTCCAATCTTAAACTAGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAACGAGCGGCGAGCGGCGAGCACTACGTCGGTGACAGGGGACGAACCGTGGACCGAT
AAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTG
AAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTA
TTTTTCATGATTTTCAAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAATTTT
GGCCCCAAACTTCATAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAA
AACTCAAAGTATACAAGATTTTGTGACCATTTGAAAAAAGCATCCCCATTTCAGACACTTTAATG
ACTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGATTTG
ATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
CCCACCGGCCCCCCCGATCACCGTAACCCCAATGCCGTCGGTACCCTAAAGCATCCGATCAGGTT
CTCCGGCGAGGCTCTGACGATGGTGCCCCGACGAAGAAAACTGTGGCACGAGCACATGTCG
Found at i:18548472 original size:26 final size:26
Alignment explanation
Indices: 18548436--18548488 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18548426 CTTGTCCGAT
*
18548436 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18548462 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18548488 C
1 C
18548489 GTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18549361 original size:26 final size:26
Alignment explanation
Indices: 18549332--18549384 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18549322 CCGATTCGAT
*
18549332 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18549358 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18549384 C
1 C
18549385 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18550025 original size:894 final size:891
Alignment explanation
Indices: 18547561--18550254 Score: 3971
Period size: 896 Copynumber: 3.0 Consensus size: 891
18547551 CCAGTCTGAT
**
18547561 CTTAGACTGGGAATGAACTCC-TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
18547625 CGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGACCGAGTCCCCCTCTACGTGCTACCGATCC
66 CGGCCAGAGGGGTGGGATGAGCAAGCCGGGGATCGATCGAGTCCCCCTCTACGTGCTACCGATCC
* *
18547690 TGCTG-CTGCAACCCTC-GGTCTGGTTCGATCTTAGACT-CGGAATGAACTCCGTATGCCTAAGC
131 TGCTGCCT-CAACCCTCAGTTC-GGTTTGATCTTAGACTGC-GAATGAACTCCGTATGCCTAAGC
* *
18547752 CAACCGACGAACAAATGGACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGC
193 CAA-C--CG-ACAAATGAACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * *
18547817 AAG-TCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCGCATCTTCATATTTGTGCATGCCAATG
254 AAGCT-GTGGATCGA-AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
18547881 CCATTTTTATGGCTTGTAAATGCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAA
317 CCATTTTTATGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* ** * * *
18547946 GACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATGTTTTAAAATTT
382 GACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTT
* * * *
18548011 TTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTAGTATTTTTTTTGGAATGCACA
447 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
18548076 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
512 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
18548141 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGT
577 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
18548206 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCATGTAACAGCACCCATCGCA
642 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGT-ATAGCACCCATCGCA
* * * * *
18548271 CATCATGTGCGCACACCCCCCCGGCCACCCTGATCGCCAGAACCCAATGCCGCCGGTCAAGTTCT
706 CATCATGTGCGCACA-CCCCCCGGCC-CCCCGATCACCAGAACCTAATGCCGTCGGTCAGGTTCT
* * * * *
18548336 CCGATGACGCTCCGACGATGGTGCCCCAGGGAAGAAAAATGTGGCACCAGCACATGCTCAAGCCC
769 CCGACGATGCTCCGA-GATGGTGCCCCA-CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
* *
18548401 AGCATGTGCTGTCGTAACCCTCGGTCTTGTCCGATCTTAGACTGGGAATGAACTTCGTATG
832 AGCATGTGCTGTCGCAACCCTCGGTC-CGTCCGATCTTAGACTGGGAATGAACTTCGTATG
*
18548462 CTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
18548527 CGACTAGAGGGGCGGGATGCA-CAAGCCGGGGATC-AGTCGGGTCCCCCTCTACGTGCTACCAAT
66 CGGCCAGAGGGGTGGGATG-AGCAAGCCGGGGATCGA-TCGAGTCCCCCTCTACGTGCTACCGAT
* * * *
18548590 CCTGTTGCCGT-AACCCTCAGTCCGG-TTCAGTCTTAGACTGAGAATGAACTCCGTATGCCTAAG
129 CCTGCTGCC-TCAACCCTCAGTTCGGTTTGA-TCTTAGACTGCGAATGAACTCCGTATGCCTAAG
* * * *
18548653 CAAACCGATGAAATGAGCGGGTGGGCGGGCGGGCAC-AGCGTCGGCCAGAGAGACAGGGATGCGC
192 CCAACCGA-CAAATGAACGGGCGGGCGGGCGGGCACTA-CGTCGGCCAGAGAGAC-GGGATGCGC
* * *
18548717 AAGCCGTGGATCGATGGGGGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
254 AAGCTGTGGATCGAAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
18548782 ATTTTTATGGCTTGTAAATGCATACAATGGTCACTTAAGCCTTCACGGGAAGTTTCATGGCGAGA
319 ATTTTTATGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
18548847 CGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTATGATTCGGGATTTTTTAAAATTTTT
384 CGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTT
18548912 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AA
449 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18548976 AAAAGTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
514 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
18549041 CGGACACTATAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTATTTAAGGGGGTGTGA
579 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
18549106 GTTCTCGAGCTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTATGAGCACGCATCGTACA
644 GTTCTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTAT-AGCACCCATCGCACA
* *
18549171 TCATGTGCGCACA-CCCCCGGCCCCCCGATCACCGGAACCTTAATGCCGTCAGTCAGGTTCTCCG
708 TCATGTGCGCACACCCCCCGGCCCCCCGATCACCAGAACC-TAATGCCGTCGGTCAGGTTCTCCG
* * *
18549235 ACGATGCTCCGGAGATGGTGCCTCTACGAAGAAAAATATGACACCAGCACATGCCCGAGCCCAGC
772 ACGATGCTCC-GAGATGGTGCC-CCACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
*
18549300 ATGTGCTGTCGCAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGAACTTCGTATG
835 ATGTGCTGTCGCAACCCTCGGTCCG-TCCGATCTTAGACTGGGAATGAACTTCGTATG
* * *
18549358 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCATGAAAGGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * **
18549423 CGGCCAGAGGGGTGGGATGAGCAAGCCGGGGATCGATCGAGTGCCCTTCTGTGTGCTACCGATCC
66 CGGCCAGAGGGGTGGGATGAGCAAGCCGGGGATCGATCGAGTCCCCCTCTACGTGCTACCGATCC
18549488 TGCTGCCTCAACCCTCAGTTCGGTTTGATCTTAGACTGCGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCTCAACCCTCAGTTCGGTTTGATCTTAGACTGCGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
18549553 CCGA-AAACGAACAGGCGGACGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCACAAGCTGT
196 CCGACAAATGAACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGT
* * **
18549617 GGATCGACAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTT
261 GGATCGA-AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* * *
18549682 ATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTC
325 ATGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
18549747 ATTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTTGGAA
390 ATTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* **
18549812 TGAGTTTTGGCCCCAAACTTACTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
455 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
18549877 CAGCTAAAAACTCGAAGTGTACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
520 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
18549942 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
585 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
18550007 GAGGTTTGATGA-GGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCTTGC
650 GAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTA-TAGCACCCATCGCACATCATGT
* *
18550071 GCGCATACCCCCCGGCCCCCTCGATCACCTGAACCCTAATGCC-TCCGGTCAGGTTCTCCGACGA
714 GCGCACACCCCCCGGCCCCC-CGATCACCAGAA-CCTAATGCCGT-CGGTCAGGTTCTCCGACGA
* *
18550135 TGCTCCAGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
776 TGCTCC-GAGATGGTGCCCC-ACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGT
**
18550200 GCTG-CTGCAACCCTCTATCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATG
839 GCTGTC-GCAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTTCGTATG
18550254 C
1 C
18550255 CTAAACCAAT
Statistics
Matches: 1618, Mismatches: 143, Indels: 69
0.88 0.08 0.04
Matches are distributed among these distances:
893 21 0.01
894 311 0.19
895 177 0.11
896 445 0.28
897 12 0.01
898 198 0.12
899 264 0.16
900 20 0.01
901 25 0.02
902 141 0.09
903 3 0.00
904 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGTGGGATGAGCAAGCCGGGGATCGATCGAGTCCCCCTCTACGTGCTACCGATCC
TGCTGCCTCAACCCTCAGTTCGGTTTGATCTTAGACTGCGAATGAACTCCGTATGCCTAAGCCAA
CCGACAAATGAACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGT
GGATCGAAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
TGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA
TTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTATAGCACCCATCGCACATCATGTGC
GCACACCCCCCGGCCCCCCGATCACCAGAACCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
CGAGATGGTGCCCCACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCG
CAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTTCGTATG
Found at i:18552579 original size:720 final size:717
Alignment explanation
Indices: 18551104--18553443 Score: 3231
Period size: 720 Copynumber: 3.2 Consensus size: 717
18551094 ACCGATCCTA
* * **
18551104 CTGCCACAACCTTCGATCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAATA
1 CTGCCACAACCCTCAATCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC
* * *
18551169 GATAAAACGAACGGGCGGGCGGGCGGGCGGGCTGGCACTATGCCGGCCAGAGAGGCGGGATGCGC
66 GATAAAACGAACGGGCGGGCGGGCGGGC--G--GGCACTACGCCGACCAGAGAGACGGGATGCGC
18551234 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
127 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
*
18551299 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAG
192 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
*
18551364 ACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTT
257 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTT
* * * ** *
18551429 TTT-TGAAAGAGTTTTGTCCCCAAACTTCATAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
322 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
* * * *
18551493 AAAACATTCAGCTAAAAACTTGAAGTGTACAGGA-TCTGTTGACCATTTGAAAAAAGTGTCCCTA
387 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG-TGACCATTTGAAAAAAGTGTCCCTA
*
18551557 TTTCAGATACTTTAATGGCTACTGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAAGGGGTGT
451 TTTCAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGT
*
18551622 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAAGCACTCATCAC
516 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC-AGCACCCATCAC
* * * *
18551687 ACATCATGTGCGCACACGCCCCCCGGGCCCCCCGATCGCCGGAACCCTAATGCCACCGGTCAGGT
580 ACATCATGTGCGCACAC-CCCCTCGGCCCCCCCGATCGCCAGAACCC-AATGCCGCCGGTCAGGT
* * ** * * *
18551752 TCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCAGATACTCTT-
643 TCTCCGACGATGCTCCGACGATGCTG-CCCGGCGAAGAAAAATGTGGCACCAGCACATGCT-TTA
*
18551816 GCCCAACATGTG
706 GCCCAGCATGTG
* *** **
18551828 CTGCCACAACTCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC
1 CTGCCACAACCCTCAATCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC
* * * * * *
18551893 GATGAAACGAACGGGCGGGCGGACGGGCGAGCACTATGCCGGCCAGAGAGACGGGTTGCGCAAGC
66 GATAAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGC
** * * *
18551958 TATGTATCGATAGGGTGGTGGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATT
131 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
* * *
18552023 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGTCTTCACGTGAAATGTCATGGCAAGACGA
196 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
*
18552088 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC-GATTCGGGATTTTTTAAAATTTTTTT
261 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAG-TTCGGGATTTTTTAAAATTTTTTT
* * *
18552152 CGGAAGGAGTTTTGGCCCCAAACTTGGCAGACATGATCCTTGTATTTTTGTTGGCTTGCATAAAA
325 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
18552217 AAATTCAGCTAAAAACTCAAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
390 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTC
* *
18552282 AGATACTTTAATGGCTAATGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGCTGTGAG
455 AGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAG
* *
18552347 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
* * *
18552412 CATGTGCGCACACCCCCTTGGCCCCCCCGATCGTCAAAACTCCAATGCCGCCGGTCAGGTTCTCC
584 CATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCAGAAC-CCAATGCCGCCGGTCAGGTTCTCC
*
18552477 GGCGATGCTCCGACGATGCTGCCCTGGCGAAGAAAAATGTGGCACCAGCACATGCTTTAGCCCAG
648 GACGATGCTCCGACGATGCTGCCC-GGCGAAGAAAAATGTGGCACCAGCACATGCTTTAGCCCAG
18552542 CATGTG
712 CATGTG
* * *
18552548 CTG-CAGCAACCCTCAATCCAATCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAAC
1 CTGCCA-CAACCCTCAATCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
* * * * * *
18552612 CGACAAAATGAACGAGTGGGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGTTGCGCAAG
65 CGATAAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAG
* * * * *
18552677 GCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCCCATCTCCATATTTCTATGTGCCAATGCCAT
130 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT
*
18552742 TTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
195 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
18552807 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAA-TTTTTT
260 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTT
*
18552871 CGGAAGGAGTTTTGGCCCCAAACCTGGTAGACATGATCCTTGCT-TTTTT-TTCGGCATGCACAA
325 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTG-TATTTTTGTT-GGCATGCACAA
* * * *
18552934 AAAAATTCAGCTAAAAACTCGAAGAGTACAAGATTTTATGGCCATTCGAAAAAAGTGTCCCTATT
388 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATT
* * *
18552999 TCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTG
453 TCAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTG
* *
18553064 AGTTCTTGAGGTTTGATGAGGGATGGGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
517 AGTTCTCGAGGTTTGATGAGGGAT--AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
* * * *
18553129 ACATCATGTACGCACACCCCCCTCGGCCCCCCCAATCGCCAGAACCCCAATGTCGTCGGTCAGGT
580 ACATCATGTGCGCACA-CCCCCTCGGCCCCCCCGATCGCCAGAA-CCCAATGCCGCCGGTCAGGT
* * * *
18553194 TCTCCGACGA---T--G--G-TGC--CCCAGCGAAGAAAAATGTGGCACTAGCACATGCCTGAGC
643 TCTCCGACGATGCTCCGACGATGCTGCCCGGCGAAGAAAAATGTGGCACCAGCACATGCTTTAGC
18553249 CCAGCATGTG
708 CCAGCATGTG
* **** * * * *
18553259 CTGCCACAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCTAACC
1 CTGCCACAACCCTCAATCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC
* * * * *
18553324 GATGAAACGAGCGGGCAGGCGAGTGGGTGGGCGGGCGGGCACTACGTCGACCAGAGAGACAGGAT
66 GATAAAACGAAC--G--GGC----GGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGAT
* *
18553389 GCGCAAGCCGTGGATCAATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
123 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
18553444 TTGCATGCCA
Statistics
Matches: 1438, Mismatches: 153, Indels: 55
0.87 0.09 0.03
Matches are distributed among these distances:
711 102 0.07
712 5 0.00
713 1 0.00
714 3 0.00
715 2 0.00
717 1 0.00
718 2 0.00
719 293 0.20
720 592 0.41
721 245 0.17
722 108 0.08
723 1 0.00
724 83 0.06
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (717 bp):
CTGCCACAACCCTCAATCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC
GATAAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTTC
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCA
GATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
TGTGCGCACACCCCCTCGGCCCCCCCGATCGCCAGAACCCAATGCCGCCGGTCAGGTTCTCCGAC
GATGCTCCGACGATGCTGCCCGGCGAAGAAAAATGTGGCACCAGCACATGCTTTAGCCCAGCATG
TG
Found at i:18554195 original size:57 final size:57
Alignment explanation
Indices: 18553947--18554343 Score: 505
Period size: 59 Copynumber: 6.7 Consensus size: 57
18553937 TTTTTTGTAG
* * *
18553947 GGAAAATTGATACTTTCAACTTTTCCTCAAAACCCCCCT-TTTTTTGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAA-----ATATTTTTTGGAAATTTATTTCTAA
18554008 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGGAAATTTCGATTT-TCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTGGAAATTT--ATTTCT-AA
* *
18554069 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCT-TTTTTTGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA---TATTTTTTGGAAATTTATTTCTAA
* *
18554128 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATAGTTTTTGGAATTTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAA
* * *
18554185 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAATTTATTTCTGA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTGGAAATTTATTTCTAA
*
18554244 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTAGAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAA
18554301 GG-AAATTGATTACTTTCAACTTTTCCCTCAAAATATATTTTTT
1 GGAAAATTGA-TACTTTCAACTTTTCCC-CAAAA-ATATTTTTT
18554344 TTGGAATTTT
Statistics
Matches: 303, Mismatches: 17, Indels: 34
0.86 0.05 0.10
Matches are distributed among these distances:
56 9 0.03
57 92 0.30
58 5 0.02
59 112 0.37
60 2 0.01
61 82 0.27
64 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.08, T:0.43
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAA
Found at i:18554256 original size:116 final size:117
Alignment explanation
Indices: 18553947--18554346 Score: 560
Period size: 116 Copynumber: 3.4 Consensus size: 117
18553937 TTTTTTGTAG
***
18553947 GGAAAATTGATACTTTCAACTTTTCCTCAAAACCCCCCTTTTTTTGAAAATTTATTTCTAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAA-ATACCTTTTTTTGAAAATTTATTTCTAAGGAA
*
18554012 AATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGGAAATTTCGATTT-TCAA
65 AATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTGG-AATTT-TATTTCT-AA
*
18554069 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTTTTGAAAATTTATTTCTAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATACCTTTTTTTGAAAATTTATTTCTAAGGAAA
*
18554133 ATTGATACTTTCAACTTTTCCCCAAAAATAGTTTTTGGAATTTTATTTCTAA
66 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAATTTTATTTCTAA
** *
18554185 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTTG-AAATTTATTTCTGAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATACCTTTTTTTGAAAATTTATTTCTAAGGAA
* *
18554248 AATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTAGAAATTTATTTCTAA
65 AATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAATTTTATTTCTAA
*
18554301 GG-AAATTGATTACTTTCAACTTTTCCCTCAAAATATA-TTTTTTTTG
1 GGAAAATTGA-TACTTTCAACTTTT-CCTCAAAA-ATACCTTTTTTTG
18554347 GAATTTTTTT
Statistics
Matches: 261, Mismatches: 10, Indels: 19
0.90 0.03 0.07
Matches are distributed among these distances:
115 8 0.03
116 120 0.46
117 29 0.11
118 11 0.04
120 61 0.23
122 32 0.12
ACGTcount: A:0.33, C:0.15, G:0.08, T:0.43
Consensus pattern (117 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATACCTTTTTTTGAAAATTTATTTCTAAGGAAA
ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAATTTTATTTCTAA
Found at i:18554811 original size:20 final size:20
Alignment explanation
Indices: 18554786--18554823 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
18554776 GAACACCGGT
*
18554786 GCCGGATTCTGGAAATTTTC
1 GCCGGAATCTGGAAATTTTC
18554806 GCCGGAATCTGGAAATTT
1 GCCGGAATCTGGAAATTT
18554824 CACCGGAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (20 bp):
GCCGGAATCTGGAAATTTTC
Found at i:18554829 original size:19 final size:20
Alignment explanation
Indices: 18554787--18554831 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
18554777 AACACCGGTG
* *
18554787 CCGGATTCTGGAAATTTTCG
1 CCGGAATCTGGAAATTTTCA
18554807 CCGGAATCTGGAAA-TTTCA
1 CCGGAATCTGGAAATTTTCA
18554826 CCGGAA
1 CCGGAA
18554832 GTTGGCCGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (20 bp):
CCGGAATCTGGAAATTTTCA
Found at i:18557195 original size:26 final size:26
Alignment explanation
Indices: 18557144--18557196 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18557134 CCAGTCCGAT
*
18557144 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18557170 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
18557196 C
1 C
18557197 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18560329 original size:717 final size:713
Alignment explanation
Indices: 18558039--18560912 Score: 3663
Period size: 710 Copynumber: 4.0 Consensus size: 713
18558029 ATCTGGTCCA
* * * *
18558039 ATCTTACATTGGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCAACGAAACGAGCGGGCGGGCGGGCG
* *
18558104 GGCACTACGCTGGCCAGAGAGACGGGAT-CGCAAGCCATGGATAGATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
18558168 AGGCACATCTTCACATTTCTGCATGCCAATGCTATTTTTATGGCTTTTAAATTCATACAATGGTC
131 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
18558233 CCTTAAGCCTTCACGT-ATAGTTTCATGGCAAGACGACTGGTTTTCTATTTTTCATGATTTTTGA
196 CCTTAAGCCTTCACGTGA-AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * * ** * *
18558297 AACCTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCCAACCTGGTAG
260 AACTTTTTACTGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * * *
18558362 ACGTGTTCCTTGCATATTTTTTGGCATGAACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAAG
325 ACGTGATCCTTGTATTTTTTTTGGCATGAACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAG
* *
18558427 ATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * ** *
18558492 TGTAAAATCTCAAATGCTCTTTAAGGGGGGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
455 TGTAAAATCTCAAATGCTCTTTAAAGGGTGTGAGTTCTCAAGGTTTCATGAGGGATAGGGGGCCA
* * *
18558557 ATATAAGGGCCAAGTATCAGCACCCATCGCACATCATGTTCGCACACCCCCCGGCCCCCCCGATC
520 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATC
* ** * *
18558622 GTCGGAACCCCAATGCCACCAGTCGGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGTGAAG
585 GCCGGAACCCCAATGCTGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAG
* * * *
18558687 AAAAATGA-GGCACCAGCACATGCGCGAGCCTAGCATATGC--TCGTAACCCTCGGT-CGAGTCC
650 AAAAAT-ACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGAGT-C
18558748 G
713 G
* * * *
18558749 ATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGAAGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCAACGAAACGAGC----GGGCGGGCG
*
18558814 GGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGG
62 GGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * * *
18558879 GTTTAGGCACATATTCTTATTTCTGCGTGCCAGTTCCATTTTTATGGCTTGTAAATTCATACAAT
127 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
18558944 GGTCTCC-TAAGCCTTCACGTGAAGTTTAATGGCAAGATGGCTCGTTTTCTAATTTTCATGATTT
192 GGTC-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * *
18559008 TTGAAACTTTTTACAGTTCAGGATTTTTTAAAATTTTTTCGGAAAGCGTTCTT--CCCCAAACTT
256 TTGAAACTTTTTACTGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTT-TTGGCCCCAAACTT
* * ** *
18559071 -GTA-ACGTGATCATT-TTTTCTTTTTTGAAATGAACAAAAAAATTCAGCT-AAAACTCGAAGTG
320 GGTAGACGTGATCCTTGTATT-TTTTTTGGCATGAACAAAAAAATTCAGCTAAAAACTCGAAATG
*
18559132 TACAAGATTTT-TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAG
384 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
18559196 CAAACCTGTAAAAATCTC-AATGCT-TTT-AA-GGTGTTGAG-TCTGCAAGGTTTCTATGAGGGA
449 CAAACCTGT-AAAATCTCAAATGCTCTTTAAAGGGTG-TGAGTTCT-CAAGGTTTC-ATGAGGGA
* * * * * * *
18559256 TA-GGGGTCAATATTAAATGGCTAAGTAACCAGAAACCATC-CACATCACGTGCGC-CACCCGCC
510 TAGGGGGCCAATA-T-AAGGGCCAAGT-ACCAGCACCCATCGCACATCATGTGCACACA-CC-CC
* * * * *
18559318 CTCGG--CCCCCGATCGCCAGAACCCTAATGCCGGCCAGTCAGGTTCTCCGGCGATGC-CTGGCG
570 C-CGGCCCCCCCGATCGCCGGAACCCCAATG-CTGCCAGTCAGGTTCTCCGGCGATGCTCCGACG
** * *
18559380 ATGCGTG-CCC-GACAAGAAAAATGCGGCACC-GCACATG-TCGAGCCCAGCATGGTGCTGGTTA
633 ATG-GTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCAT-GTGCT-G-TC
18559441 GCAACCCTC-GTCCCG-GTCTG
694 GCAACCCTCGGT-CCGAGTC-G
* * * * * *
18559461 ATCTTAGA-TTGGAATGAACTTCGTATGCCTAAACGAA-CAACAAAACGAATGGGCGAGCTGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCAACGAAACG-A---GCGGGCGGGCG
*
18559524 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
62 GGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
18559589 GTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGACATT-TAAATTCATACAA
127 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC-TTGTAAATTCATACAA
18559653 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
191 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
*
18559718 TTGAAACTTTTTACTGTTCGGGATTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
256 TTGAAACTTTTTACTGTTCAGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * ** * *
18559783 GGCAGACATGATCCTTGTATTTTTTTTGGCATGCGCAAAAAAATTCAGTTAAAAGCTCGAAATGT
320 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGAACAAAAAAATTCAGCTAAAAACTCGAAATGT
18559848 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
385 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
18559913 AAACTTGTAAAATCTCAAATGCTCTTTAAAAGGGTGTGAGCTCTCAAGGTTTCATGAGGGATAGG
450 AAACCTGTAAAATCTCAAATGCTCTTT-AAAGGGTGTGAGTTCTCAAGGTTTCATGAGGGATAGG
* * * *
18559978 GGGCCAATATAAGGGCTAAGTACCATCACCCATCGCACATCATGTGCACACACCCGCCACCAGTC
514 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-CC-CC-CCGGCC
*
18560043 CCCCCGATCGCCGGAACCCCAATGCTGCCAGTCAGATTCTCCGGCGATGCTCCGACGATGGTGCC
576 CCCCCGATCGCCGGAACCCCAATGCTGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
18560108 CCGGTGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTG-CAGCAACCCTCGG
641 CCGGTGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTC-GCAACCCTCGG
18560172 TCCG-GTCG
705 TCCGAGTCG
* *
18560180 ATCATAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACGAGCGGGCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCAACGAAACGAGCGGGCGGGCGGGCG
* *
18560245 GGCACTACG-TCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTT
66 GGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * **
18560309 TAGGGACATCTTTATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
130 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* **
18560374 CCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * * *
18560439 AACTTTTT-GTGGTTCAGGATTTTTTAAAATTTTTTTGGTAGGAGTTTTGGCCCTAAACTTGGTA
260 AACTTTTTACT-GTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * *
18560503 GACGTGATCCTTTTATTTTTGTTGGCATCCACAAAAAAAAAATCAGCTAAAAACTC-AAAGTGTA
324 GACGTGATCCTTGTATTTTTTTTGGCAT-GA-ACAAAAAAATTCAGCTAAAAACTCGAAA-TGTA
* **
18560567 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGATAGCA
386 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
** * * * *
18560632 AACCTGTAAAATCTCAAATGCTCTACAAGGGGGTGCGAGTTCTCAAGGTTTGATGGGGGATAGGG
451 AACCTGTAAAATCTCAAATGCTCTTTAA-AGGGTGTGAGTTCTCAAGGTTTCATGAGGGATAGGG
*
18560697 GGCCAATATAAGGGCCAAGTACCAGCACCGATCGCACATCATGTGCACACACCCCCCGGCCCCCC
515 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCC
* * * * *
18560762 CGATCGACGGAACCCCAA---TGCC-GTC-GG---T-CAG-G-TTCTCCGATGATGGTGCCCCGA
580 CGATCGCCGGAACCCCAATGCTGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGG
* ** * * * * *
18560816 CGAAGAAAAATGTGACACCAGCACATGCCCGAGCACATCATGTGCTGTCGCAACCCTCGATCCGA
645 TGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGA
*
18560881 TTCG
710 GTCG
18560885 ATCTTAGACTGGGAATGAACTCC-TATGC
1 ATCTTAGACTGGGAATGAACTCCGTATGC
18560913 TTAGACTGGG
Statistics
Matches: 1895, Mismatches: 195, Indels: 154
0.84 0.09 0.07
Matches are distributed among these distances:
704 78 0.04
705 27 0.01
706 2 0.00
707 18 0.01
708 30 0.02
709 34 0.02
710 379 0.20
711 129 0.07
712 72 0.04
713 7 0.00
714 84 0.04
715 242 0.13
716 152 0.08
717 239 0.13
718 208 0.11
719 60 0.03
720 81 0.04
721 28 0.01
722 12 0.01
723 13 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (713 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCAACGAAACGAGCGGGCGGGCGGGCG
GGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
ACTTTTTACTGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTTTTGGCATGAACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAAGGGTGTGAGTTCTCAAGGTTTCATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCG
CCGGAACCCCAATGCTGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGA
AAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGAGTCG
Found at i:18560921 original size:25 final size:26
Alignment explanation
Indices: 18560887--18560938 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
18560877 CCGATTCGAT
18560887 CTTAGACTGGGAATGAACTCC-TATG
1 CTTAGACTGGGAATGAACTCCGTATG
18560912 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18560938 C
1 C
18560939 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18562546 original size:26 final size:26
Alignment explanation
Indices: 18562507--18562559 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18562497 CTGGTTTGAT
* *
18562507 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18562533 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18562559 C
1 C
18562560 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18563665 original size:715 final size:712
Alignment explanation
Indices: 18562663--18564871 Score: 3153
Period size: 719 Copynumber: 3.1 Consensus size: 712
18562653 CTGCCGATCC
18562663 TGCTGCTGCAACCCTCGGTCCTG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCTGCAACCCTCGGTCC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
18562727 GTCAACGAAACGAGCGGGCGGGAGGGTGGGCAGGCACTACTTCGACCAGAGAGACGGGATGCGCA
65 GTCGACGAAATGAGC-GGCGGGAGGCTGGGCAGGCACTACTCCGGCCAGAGAGACGGGATGCGCA
* *
18562792 AGTCATGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
129 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
18562857 ATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAACCCTTCACGTGAAGTTTCATGGCAAGA
194 ATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
18562922 CAAGTCGTTTTCTATTTTTCATGATTTTCCAAACCTTTTGTGGTTCAGGATTTTCTAAAATTTTT
259 CGAGTCGTTTTCTATTTTTCATGATTTTCCAAACCTTTTGTGGTTCAGGATTTTTTAAAATTTTT
* *
18562987 TTGGAAGGAGTTTTGGCCCCAAAC-TGGTAGACGTGATCCTTGTATTTTT-TTGTCATGCACAAA
324 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
18563050 AAAAATCAGCTAAAAACTTGAAGTGTACAAGATTTTGCGACCCATTTGAAAAAAGGTGTCCACAT
389 AAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA-CCATTTGAAAAAA-GTGTCCCCAT
18563115 TTCAGACAC-TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
452 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
18563179 GAGTTCTCGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
517 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
18563244 CATCATGTGCGCACACCCCCTGGCCCCTCGATCGTCGAAACCCCAACGTCGTCGGTCAGGTTCTC
582 CATCATGTGCGCACACCCCCCGGCCCCTCGATCGTCG-AACCCCAATG-CGCCGGTCAGGTTCTC
* * *
18563309 TGACGATGCTCCGACGATGGTGCCCTAGCGAACAAAAATGCGGCACCAGCACATACCCGAGCCCA
645 -GATGATGCTCCGACGATGGTGCCC-AGTGAAGAAAAATGCGGCACCAGCACATACCCGAGCCCA
*
18563374 ACATG
708 GCATG
* * *
18563379 TGCTGCTGCAACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAG
1 TGCTGCTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAG
*
18563444 TCGACGAAATGAGCGGCGGGAGGCTGGGCAGGCACTACTCCGGCCAGAGAGATGGGATGCGCAAG
66 TCGACGAAATGAGCGGCGGGAGGCTGGGCAGGCACTACTCCGGCCAGAGAGACGGGATGCGCAAG
* *
18563509 TCGTGGATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCAT
131 TCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
18563574 TTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
196 TTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
18563639 AGTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTGTGGTTCAGGATTTTTTAAACTTTTTTC
261 AGTCGTTTTCTATTTTTCATGATTTTCCAAACCTTTTGTGGTTCAGGATTTTTTAAAATTTTTT-
* *
18563704 AGG-AGGAGTTTTGGCCCCAAACTTGGTAGACAAGATCCTTGTATTTTTGTTGGCATGCACAAAA
325 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
18563768 AAAACCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
390 AAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
18563833 AGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAG
455 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
18563897 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
520 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
18563962 CATTTGCACACACCCCCCGGCCCCCCCGATTGTCGAA-CCCAATGCCACCGATCAGGTTCTACGA
585 CATGTGCGCACACCCCCCGG-CCCCTCGATCGTCGAACCCCAATG-CGCCGGTCAGGTTCT-CGA
* * ** *
18564026 TGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGTGAAACCAGCACATGCCCGAGCCCAGCA
647 TGATGCTCCGACGATGGTG-CCCAGTGAAGAAAAATGCGGCACCAGCACATACCCGAGCCCAGCA
18564091 TG
711 TG
*** * * * ** * * *
18564093 TGCTGCAAAAACCCTTGGTCTGGTTTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGCTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAG
* * * * * * * * * * *
18564158 CCGACGAAACAGGTGTGTGGGCGGGTGTGC-GGGCGGGGACAACGCCGGCCAGAGAGACAGGTTA
66 TCGACG-AA-A--TGAG-CGGCGGGAG-GCTGGGCAGGCACTACTCCGGCCAGAGAGACGGGATG
* * *
18564222 AGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
125 CGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* **
18564287 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGC
190 TGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * ** * *
18564352 AAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAA-CTTTGTGCGGTTCTGGATTTTTTAAAA
255 AAGACGAGTCGTTTTCTATTTTTCATGATTTTCCAAACCTTT-TGTGGTTCAGGATTTTTTAAAA
* *
18564416 TTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTTTTTTTGTTGGCATGT
319 TTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC
* * *
18564481 ACAAAAAAATTCAGCTAAAAAATCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
384 ACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
18564546 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
449 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
18564611 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGCACCAGCACCCATC
514 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * *
18564676 GAACATCATGTGCGCACACCCCCCCGACCCCTCTGATCATCGGAACCCTAATGCTGCCGGTCAGG
579 GCACATCATGTGCGCACA-CCCCCCGGCCCCTC-GATCGTC-GAACCCCAATGC-GCCGGTCAGG
* * * *
18564741 TTCTCCGGTGATGCTCCGGCGATGGTGCCCAGGTGAAGAAAAATGGGGCACCAGCACA-AGCCTG
640 TTCT-CGATGATGCTCCGACGATGGTGCCCA-GTGAAGAAAAATGCGGCACCAGCACATA-CCCG
18564805 AGCCCAGCATG
702 AGCCCAGCATG
* * * * *
18564816 TGCTGC-CCTAACCCTCGATCTGATCCGATCTTAGTCTTGGAATGAACTCCGTATGC
1 TGCTGCTGC-AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
18564872 TTAGAGTAAG
Statistics
Matches: 1335, Mismatches: 133, Indels: 43
0.88 0.09 0.03
Matches are distributed among these distances:
714 132 0.10
715 365 0.27
716 170 0.13
717 50 0.04
718 8 0.01
719 382 0.29
720 89 0.07
721 12 0.01
722 7 0.01
723 120 0.09
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (712 bp):
TGCTGCTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAG
TCGACGAAATGAGCGGCGGGAGGCTGGGCAGGCACTACTCCGGCCAGAGAGACGGGATGCGCAAG
TCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
AGTCGTTTTCTATTTTTCATGATTTTCCAAACCTTTTGTGGTTCAGGATTTTTTAAAATTTTTTT
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCGGCCCCTCGATCGTCGAACCCCAATGCGCCGGTCAGGTTCTCGATGAT
GCTCCGACGATGGTGCCCAGTGAAGAAAAATGCGGCACCAGCACATACCCGAGCCCAGCATG
Found at i:18568345 original size:26 final size:25
Alignment explanation
Indices: 18568304--18568355 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
18568294 CCAATCCAAT
18568304 CTTAGACTGGAATGAACTACGTATG
1 CTTAGACTGGAATGAACTACGTATG
*
18568329 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTACGTATG
18568355 C
1 C
18568356 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTACGTATG
Found at i:18569234 original size:26 final size:26
Alignment explanation
Indices: 18569205--18569257 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18569195 CTCGTCCGAT
18569205 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18569231 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18569257 C
1 C
18569258 CTAAGCTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18569467 original size:897 final size:893
Alignment explanation
Indices: 18567434--18580222 Score: 15447
Period size: 896 Copynumber: 14.5 Consensus size: 893
18567424 CCATTCCAAT
* * *
18567434 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * **
18567499 CGGCCAGAAGCGTGGGATGTGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTTATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCC
* * * *
18567564 TGCTACCACAACCCTCGGTCTGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
18567629 CTGATGAAACGAGCGTGCGGGTGAGCGGCCAGTACGCCGGCCAGAGAGGTGGGATGCGCAAGCCG
196 CCGACGAAACGAGCG-G-GCG-G-GCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
* * *
18567694 TGGGTCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTGCATGCCAATGCCATTTT
257 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
** *
18567759 TATTTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACT
322 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
** *
18567824 CGTTTTCTA-TTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTGTTTC-GA
387 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
* * *
18567887 AGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG-AGTTTTTGTTGGTATGCACCAAAAAA
452 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAA
*
18567951 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
516 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
18568016 CACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATTCTCTTTAAAGGGGTGTGAGTTC
581 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
18568081 TCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCAT
646 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCAT
* * ** * *
18568146 GTGCGCAAACCCCTCGGCCCCCCGATCGTCAAAACCCCAATGCCATCGGTCAGGTTCTCCGGTGA
711 GTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGA
* * ** *
18568211 TGCTCCGACGATGGTGCCCCGCCGAAGAAAAATGCGGCACCAGCACATGCCTAAGCGCAGCATGT
776 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * *
18568276 GCTGCCGCAACCCTTGGTCCAATCCAATCTTAGACT-GGAATGAACTACGTATG
841 GCTGCCGCAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18568329 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTCATC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * **
18568394 CGGCCATAGGGCCGGGAAGCGGAAGCAGGGGATCGGCCAGGTCCCCCTCTATCG-ACTATCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGT-GTGCTGCCGATC
* * * *
18568458 CTGTTGCTGCAACCCTCAGT-TCGGTCTGATCTTAGACTGGGAATGAAGTCCGTATGCCTAAGCC
130 CTGCTGCCGCAACCCTCAGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
18568522 AACCGACAAAACGAGCGGGTGGGTGGGCGGCCAGTATGTCGGCCAGAGAGGCGGGATGCGCAAGC
194 AACCGACGAAACGAGC----GGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
* *
18568587 TGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATT
255 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
18568652 TTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGA
320 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * * * *
18568717 CTCGTTTTCTAATTTTCACGATTTTTGAAA-TATTATATGGTTAGGGATTTTTTAAAATTTTTTC
385 CTCGTTTTCTATTTTTCACGATTTTTGAAACT-TTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * *
18568781 GGAAGGTGTTTTGGCCGCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAA
449 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
18568846 AATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTCACCACTTGAAAAAAGTGTCCCCATTTCA
514 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
18568911 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
579 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * * *
18568976 TCTTGAGGTTTGATGAGGGATAGGGGGCTAATATGAGGGCCAAGCA-CTGACACCCATCACACAT
644 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAG-CACCCATCGCACAT
* **
18569040 CATGTGCGCACACCCCCCCTCCGGCCCCCCGATCGTTGGAACCCCAATGCCACCGGTCAGGTTCT
708 CATGTGCGCACA---CCCC-CCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * ** **
18569105 CCGGCAATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGGTCGAGCCC
769 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
** * * *
18569170 AGTGTGTGCTGTCGCAACTCTTGGTCTCGTCCGATCTTAGACTGGGAATGAACTCCGTATG
834 AGCATGTGCTGCCGCAACCCTCGGTC-CGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
18569231 CTTAGACTGGGAATGAACTCCGTATGCCTAAG-CTAACCCACGAAATGAGCGTGCGTGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
18569295 CCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGTG-GCTGCCAATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATC
* * ** *
18569359 CTGCTACTGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
18569424 ACCAACGAAACGAGCGGGTGAGCGGGCACTACGCCGACCAGAGAGGCAGGATGCGTAAGCCGTGG
195 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* * *
18569489 ATCGATAGGGTGGTAGGTGGTTTTAGGCAAATCATCATATTTCTGCATGCCAATGCCATTTTTAT
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
*
18569554 GG-TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGT
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
18569618 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTAGGGATTTTTTAAAATATTTTCAGG-AG
390 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC-GGAAG
*
18569682 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCACAAAATAATTC
454 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
18569746 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACAC
519 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
18569811 TTTAATGGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCG
584 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * *
18569876 AAGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGCAGCAGCACCCATCGCACATCATCTG
649 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTG
** * * * * * *
18569941 CGCACACCCCTCTAGCCCCCTGATCGTCGGAACCCTAATACCGTCGGTCAAGTTCTCTGGTGATG
714 CGCACACCCC-CCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATG
** * * *
18570006 CTCCGACGATGGTGCCCCGTTGAAGAAAAATATGGCAACAGCACAT-CCCAAGCCCAGCATGTGC
778 CTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
18570070 TACCACAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATG
843 TGCCGCAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATG
** * * *
18570122 CTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * *
18570187 CGGGCAGAGGGGCAAGATGCACAAGCCGAGGATCGGTCAGGTCCCCCTCTGTGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCC
* * * ** * *
18570252 TGCTACCGCATCCCTCTGTCTGGTCCTTTCTTAGACTAGGAACGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * ** *
18570317 CCGACGAAACGAGCGGGCTGGCGGGCGGGCTCTACGTCGGCCAAAGAGACTAGATGCGCAAGTCG
196 CCGACGAAACGAGC--G--GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
* * * **
18570382 TGGATCGATAGGGTGGTCGGTGGGTTTAGCCATATCTTCATATTTCTGTGTGCCAATGCCATTTT
257 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
18570447 TATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCGTGTGAAGTTTCAAGGCAAGACGACT
322 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* ** * * * *
18570512 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGCTTCAAGATTTTTAAAAATTTTTTCGGC
387 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
* * * * * *
18570577 AGGTGTTTTGGTCCCAAACTTGATAGACGTGATCCTTTTATTTTTGTTGGTATGCA-TAAAAAAT
452 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * * *
18570641 TCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCGTTTGAAAAATGTGTCCCTATTTTAGAC
517 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
18570706 ACTTTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
582 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
18570771 CGAGGTTTGATGAGGGATAAGAGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACACCATG
647 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATG
* *
18570836 TGCGCACACCCCGCCCGGCCCCCCTGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
712 TGCGCACA-CCC-CCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
* ** * *
18570901 GATGCTCCGGCGATGGTGCCCCGTTGAAGAAAAATGGGGCACTAGCACATGCCCGAGCCCAGCAT
774 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
* *
18570966 GTGCTGCCGTAACCCT---T--G---G----T-G--T-GG--T----T-TG-AT-
839 GTGCTGCCGCAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
18570996 CTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGTGTGTGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18571061 CGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTTTGTGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCC
* * * ** *
18571126 TGCTGCCGCAGCACTCGGTCTGGTCAAATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18571191 CCGACGAAACGAGTGGACGGGCGGGCGGGCACTATGCCGGCCAGAAAGGCGAGATGCGCAAGCCG
196 CCGACGAAACGA---G-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
* * * *
18571256 TGGATCGATAGGGTGTTTGGTGGGTTTAGG-ACATCTTCATATTTCTACGTGCCAATGCCATTTT
257 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * * *
18571320 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTATCATGGCCAGATGACT
322 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* * ** * * * * **
18571385 CATTTTTTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCGGGATTTTTAAAAAAATTTTCGGA
387 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
* * * *
18571450 AGGAGTTTTGG-CACAAAATTGGTAGACGTGATCCTTGTTTTTTTTTTGGCATGCACAAAAAAAT
452 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
18571514 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGAC
517 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * ** *
18571579 ACTTTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAAGAGTGAGTTCT
582 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
18571644 CCAGTTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATG
647 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATG
* * * * * * * * * **
18571709 TGTGCATA------GCCCCCCCGATCGCCGGAACCCCATTGCCATCAGTCAAGTTTTCCGATGAT
712 TGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGAT
* * * *
18571768 GCTTCGACGATGGTGCCCCGGCAAAGAAAAATGTGGCACAAGCACATGCCCGAGCCCAGCATGTG
777 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * *
18571833 CTACCGCAACCCTCGATCTAGTCCGATCTTAGATTGGGAATGAACTCCGTATG
842 CTGCCGCAACCCTCGGTC-CGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18571886 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCCGACGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
18571951 CGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTACTGCAGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCC
* * * * *
18572016 TGCTGCCAC-ACCCGTCAGTCCGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCCTAGGCCA
131 TGCTGCCGCAACCC-TCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
18572080 AACGATGAAACGAGCGGGCGAGCGGGCGACAGTACGCCAGCCAGAGAGGCGGGATGCGCAAGCCG
195 ACCGACGAAACGAGCGGGCGGGCGGGC-AC--TACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
* **
18572145 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTT
257 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
18572210 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACT
322 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* * *
18572275 CGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTT-AAATTTTTTCGAA
387 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
* *
18572339 AGGATTTTTGGCCCCAAACTTGGTAGCCGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAAT
452 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
18572403 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
517 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * **
18572468 ATTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGCAAGTTCT
582 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * * * *
18572533 CGAGGTTCGATGAGGGATAAGTGGCTAATATAAGGGCCAAGCACCAGCACCCATCGCATATCAGG
647 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATG
* * * *
18572598 TGCGCACACCCCCCGGCCCCCGGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGAT
712 TGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGAT
* * * *
18572663 GCTCCGGCGATGGTGCCCCGTCGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCAAGCATGTG
777 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTG
* *
18572728 CTACTGCAA----C---CC-T-CG--C-T---CT-GG--T----T-CG-AT-
842 CTGCCGCAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18572755 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCCGGTGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
18572820 CGACCAGAGGGGCGGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCC
* * * *
18572885 TGCTGCCGCAATCGTCAGTCTAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
18572950 ACGACGAAACGAGCGGGCGAGCGGGCGGCTAGTAGGCCGACCAGAGAGGCGGGATGCGTAAGCCA
196 CCGACGAAACGAGCGGGCG-G-GCG-GGC-ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
* * **
18573015 TGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTT
257 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
18573080 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACAACT
322 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* * * *
18573145 CGTTTTCTATTTTTCACGATTATTGAAACTTTTTGCGGTTCGAGATTTTTTTAAATTTTTTCTGA
387 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
* * * *
18573210 AGGATTTTTGGCCCCAAAATTGGCAGACGTGATCCTTGTATTTTT-TTTGCATGCACAAAAAAAT
452 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * *
18573274 TCAGCTAAAAACTAGAACTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAC
517 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * * * *
18573339 ATTTTAAGGGCTAGTGACAGCAAACCTGTAAAATCTTAAAAGCTCTTTAAGGGGGTGTGAGTTCT
582 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
18573404 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGCACCAGCACCCATCACACATCATG
647 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATG
* ** * ** * * * *
18573469 TGCGAACACCCCCCGGCCCCCCCGATCACCAGAACCTTAACGTCATCGGTCAGGTTCTCCGGGGA
712 TGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGA
** * *
18573534 TGCTCCGACGATGGTGCCCCGATTAAGAAAAATGTGGCACCAGCGCATGCCCGAGCCCAGCATCT
776 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * * * *
18573599 GCTACTGTAATCCTCGATCCAGTCTGATGTTAGACTGGGAATGAACTCCGTATG
841 GCTGCCGCAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18573653 CTTAGACAGGGAATGAGCTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * **
18573718 CGGCCAGAGGGTTGGGATGTGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCT----A-CC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCC
* * * *
18573778 -G-T-----AACCCTC-GATCTGATCTGATCTTAGACTGGGAATGAATTTCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
18573835 ACCGACGAAATGAGCAGACAGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCC
195 ACCGACGAAACGAGC-G---GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* ** * ***
18573900 GTGGATCGATAGGGTGGCAGGTGGGTTTCTGCACATCTTCTTATTTCTATGTGCCAATGCCATTT
256 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
18573965 TTATGGCTTGTAAATTCATACAATGGTCCCTGAACCCTTCGTGTGAAGTTTCATGGCAAGACGAC
321 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * *
18574030 TCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGATA-TTTTTAAAATTTTTTCAG
386 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* * ** *
18574094 AAGGAGTTTTGGCCCCAAACTTGCTAGACGTAATCCTTGTATTTTTTGTTGGCATGTGCCAAAAA
451 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAA
* * *
18574159 ATTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTCCAG
515 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
18574224 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGATTT
580 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * *
18574289 CTCGAGGTTTGATGAGAGATAGAGGGCCAATATAAGGGCCAAGCACCAGCACCCATTGCAAATGA
645 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCA
* * * * * **
18574354 TGTGCGCGCACCCCCCGGCCCCCCCAATCGTCGAAACCCCAACGCCGTCGGTCAGTTTCTCTAGC
710 TGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
** * *
18574419 GATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCAT
774 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * * *
18574484 GTGCAGCCGCAACGCTCAGTCCGGTCCGATCTTACACTAGGAATGAACTCTGTATG
839 GTGCTGCCGCAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATG
18574540 CTT--A----GAATG------G---G---AA-T--------GAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
18574578 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GACTGGGT-CTCC-C--T-T--TG-CG-T-
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGTGTGCTGCCGATC
* * *
18574632 -T-CTGCCGCAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
18574695 ACCGACGAAACGAGCGGGCGGGCGGCCGGGCACTACGCCAGCAAGAGAGGCGGGATGCGTAAGCC
195 ACCGACGAAACGAGCGGGC--G-GG-CGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* * * *
18574760 ATGGATCAATACGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
256 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
18574825 TTATGGCTTGTAAATTCATACAATGGTCCCTGAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
321 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * *
18574890 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATTCGAGATTTTTTTAAATTTTTTCGA
386 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* * * * *
18574955 AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCCTGTATTTTTTTCTAGCATGCAC-AAAAC
451 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT-TGGCATGCACAAAAAA
* * *
18575019 AGTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAG
515 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
18575084 ACACTTTAATGGCAACTGGCAGCAAACCTGTAAAATCGCAAATGCTCTTTAAGGGGGTGTGAGTT
580 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
18575149 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCA
645 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCA
* * **
18575214 TGTGCGCACACCGCCCCGG-CCCCTGATCGCCAAAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
710 TGTGCGCACACC-CCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
* * *
18575278 GATGCACCGACGATGGTGCCCTGACGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCAT
774 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
* * *
18575343 GTGCTACCGTAA-CCT---T---T--GGTC-----C---G---G---TCCG-AT-
839 GTGCTGCCGCAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
18575373 CTTAGGCTGGGAATGAACTCCGTACGCCTAAGTCAACCCACGATACGAGCGTACGGGCGTTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** * *
18575438 TGGCTAGAGGGACGGGATGCTCAAGTCGGGGATCGGTCGGGTCTTCCTCTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCC
** * ** * * *
18575503 TGCTGCTACAACCCTGA-TCTGGTTTGATCTTAGACTAGGAATGAACTCCGTATACCTAAGCTAA
131 TGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
18575567 CAGACAAAATGAGCGGACGGGCGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAA
196 CCGAC-GAA--A-C-GA---GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAA
* * *
18575632 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCAAATGCCA
253 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
18575697 TTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGAC
318 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * * * * * *
18575762 GACTCATTTTATATTTTTAACAATTTTTGAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTCT
383 GACTCGTTTTCTATTTTTCACGATTTTTG-AAACTTTTTACGGTTCGAGATTTTTTAAAATTT-T
* *
18575827 TT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGTATGCACAA
446 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * ** *
18575891 AAAGATTCAGCAAAAAACAT-GAAGTGTACAAGATTTTGTGATTATTTGAAAAAAATGTCCCCAT
511 AAAAATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
18575955 TTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGT
575 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * * *
18576020 GAGTTCTCAAGTTTTGATGAGGAATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
640 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCA
* * *
18576085 CATCATGTGCGCACACCCCCCGGCCCCATCGATCGTCGAAACCCCAATGTCGTCGGTCAGGTTCT
705 CATCATGTGCGCACACCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * *
18576150 CCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCTCATGCCCGAGCCC
769 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
* *
18576215 AGCATGTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
834 AGCATGTGCTGCCGCAACCCTCGGTCCG-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18576276 CTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACTCACGAAACAAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** ** *
18576341 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAATCGGGTCCCCCTCTACGTGCTGCCGGTCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCC
**
18576406 TGCTGCCGCAACCCTCAGTCCAGT-CGAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCAGTCTGGTCCG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * *
18576470 ATCGATGAAACGAGCAGGCGGGCGGGCACTACGTCGGCTAGAGAGACGGGATACGCAAGGCGTGG
195 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* * *
18576535 ATCGATAGAGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
18576600 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCGT
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * ** * * *
18576665 TTTCTATTTTTAATGATTTTCAAAACTTTTTGCGGTTCCAGATTTTTTAAAATTTTTTTGGAAGG
390 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* ** * * *
18576730 AGTTTTGACCCCAAACTTTTTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAACAATTCA
455 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
18576795 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACT
520 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
18576860 TTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTCAGGGGGTGTGAGTTCTCGA
585 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
18576925 GGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATGTGC
650 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGC
* * * * *
18576990 GCACAACCCCCATGGCCCCCCGATCGTCGGAACCCCAATCCCGCCGGTCAGGTTCTCTGGTGATG
715 GCAC-ACCCCC-CGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATG
* **
18577055 CTCTGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
778 CTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
18577120 TGCCGCAA----C---CC-T-CGA--TT---C---G---G---TCCG-AT-
843 TGCCGCAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18577146 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAAAGAGCGTGCAGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** * *
18577211 CGACCAGAGAGGTGGGATGCGTAAAGCAGGGGATCGACCGGGTCCCCCTTTGCGTGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCG-CAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATC
* * ** * * *
18577276 CTGCTGCCGTAACCCTCAGTCTGATCTAATCTTATACTGGGAATGAACTCTGCATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * * * *
18577341 TTCGATGAAACGAGCAGGCGGGCGGGTGGGCGGGCGGGCATTACGTCGGCCAGAGAGAC-GAATG
195 ACCGACGAAAC--G-A-----GC----GGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATG
* * *
18577405 CGCAAGCCGTGAATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTGTGCATGCCAA
248 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
*
18577470 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
313 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* **
18577535 AAGACGACTCGTTTTCTATTTTTCACGA-TTTCGAAAACTTTTTGTGGTTCGAGATTTTTTAAAA
378 AAGACGACTCGTTTTCTATTTTTCACGATTTTTG-AAACTTTTTACGGTTCGAGATTTTTTAAAA
* *
18577599 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTCTTTTTGTTGGAATGC
442 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
18577664 ACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
507 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
18577729 CATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
572 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
18577794 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
637 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATC
*
18577859 GCACATCATGTGCGTACACCCCCCCGGCCCCTCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
702 GCACATCATGTGCGCACA-CCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
* * * * * * **
18577924 TTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATATGACAGCAGCACATTCCTAA
765 TTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGA
* * * *
18577989 GCCTAGCATTTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGTGAATGAACTCCGTATG
830 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCG-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** * * *
18578054 CTTAGACTGGGAATGATCACCGTATGCCTAAGTCAACCCATAAAACGAGCATGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
18578119 CTGCCAAAGGGGTGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGTGTACTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCC
* *
18578184 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
18578249 CTGATGAAACGAGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGAGATGCACAAGCCGTGGA
196 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
* *
18578314 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTGCAGATTTCTGCATGCCAATGCCATTTTTATG
261 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * * *
18578379 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGATGACTTGTT
326 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
*
18578444 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
391 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
*** * **
18578509 GTTTTGGTGACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTTTG
456 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * * * * * * *
18578574 CCAAAAAATCGAAGTGTACAGGATTTTGCGACCATTTGAAAAAAGTATCCCGATTTTAGATACTT
521 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
18578639 TAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
586 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
** * * * *
18578704 GCATGATGAGAGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCGTCG-ACATCATGTGCG
651 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCG
* *
18578768 CACACCCCCCGGCCCTCCCGATCGTCGGAACCTCAAGGCCGTCGGTCAGGTTCTCCGGCGATGCT
716 CACACCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCT
* * * * * * *
18578833 CCGGCGACGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTCAAGCCTAGCATGTTCTG
780 CCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * * * *
18578898 TCGCAACCCCCGGTTCGGTCCAATCTTAGACTGGGAAGGAACTTCGTATG
845 CCGCAACCCTCGG-TCCGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** *
18578948 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAAACACGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * ** ** *
18579013 TGGCCAGAGGGGTAGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCC
* * * * *
18579078 TACTACCGCAACCCTCGGTCTGGTCCGATCTGAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
131 TGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * *
18579143 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTATGCCAACCAGAGAGACGAGATGCAG-AAGCC
196 CCGACGAAACGA----GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGC-GCAAGCC
* *
18579207 GTGGACCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
256 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
18579272 TTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAAC
321 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * * ** *
18579337 TCATTTTCTATTTTTTACGACTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTT-GG
386 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* ** *
18579401 AAGGAATTTTGTTCCCAAACTTGGTAGACGTGATCCTTGTAATTTTGTTGGCATGCACAAAAAAA
451 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
18579466 TTCAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCAATTGAAAAAAGTGTCCCAATTTCAGA
516 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
18579531 CACTTTAATGGCTACTGGCAACAAATCTGTAAAATCTC--A--------AA-------T--G--C
581 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * **
18579575 TC-----TT--T-----ATAGGGGGCCAATATAA-GGCCAAGTACCAGCACCTATCATACATCAT
646 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCAT
* * * * * * * *
18579627 GTGCGTACA-CCCCC-G-ACCCTGATTGTTGGAACCCCAACGCCGTCGATCAGGTTCTCCGACGA
711 GTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGA
* * * * * * **
18579689 TGCTCTGGCGATGGTGCCGCGGCGAAGAAAAATGAGGCACCAGCACATGCCTGAGCCCAATATGT
776 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * * *
18579754 GCTACTGCAACCCTCGGTCTGGTCTGATGTTAGACTAGGAATGAACTCCGTATG
841 GCTGCCGCAACCCTCGGTC-CGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18579808 CCTAGACTAGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * ** **
18579873 CGGCCAGA-GGG-GGGATGCGTAAGCCGGGGATTAGCCGGGTCCCCCTCTCCGTGCTGCCGATTT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCC
* * * * * *
18579936 TGCTACCACAATCCTCGGTCTGGTCAGATCTTAGAGTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
18580001 CAGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGA--------GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAA
* * *
18580066 GCCGTGGATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATACCA
253 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
18580131 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
318 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * *
18580196 AACTTGTTTTCTATTTTTCATGATTTT
383 GACTCGTTTTCTATTTTTCACGATTTT
18580223 CTGACCATTG
Statistics
Matches: 10341, Mismatches: 1269, Indels: 601
0.85 0.10 0.05
Matches are distributed among these distances:
833 3 0.00
834 2 0.00
835 3 0.00
838 1 0.00
839 5 0.00
841 1 0.00
844 1 0.00
845 1 0.00
848 1 0.00
849 3 0.00
851 3 0.00
852 1 0.00
853 1 0.00
855 3 0.00
856 3 0.00
858 115 0.01
859 117 0.01
860 765 0.07
861 72 0.01
862 191 0.02
863 24 0.00
864 135 0.01
865 8 0.00
867 2 0.00
868 3 0.00
869 199 0.02
870 285 0.03
871 407 0.04
872 169 0.02
873 348 0.03
874 247 0.02
875 198 0.02
876 283 0.03
877 115 0.01
878 9 0.00
879 11 0.00
880 2 0.00
881 22 0.00
882 549 0.05
883 33 0.00
884 3 0.00
885 58 0.01
886 271 0.03
887 354 0.03
888 6 0.00
889 293 0.03
890 339 0.03
891 163 0.02
892 174 0.02
893 2 0.00
894 338 0.03
895 980 0.09
896 1015 0.10
897 856 0.08
898 353 0.03
899 84 0.01
900 32 0.00
901 213 0.02
902 118 0.01
903 127 0.01
904 42 0.00
905 1 0.00
906 4 0.00
907 103 0.01
908 71 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCC
TGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTC
CGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
CGCAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:18570147 original size:26 final size:26
Alignment explanation
Indices: 18570096--18570148 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18570086 CCAGTCCGAT
*
18570096 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
18570122 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
18570148 C
1 C
18570149 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18571889 original size:26 final size:26
Alignment explanation
Indices: 18571860--18571912 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18571850 CTAGTCCGAT
*
18571860 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18571886 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18571912 C
1 C
18571913 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18573664 original size:26 final size:26
Alignment explanation
Indices: 18573628--18573679 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18573618 CAGTCTGATG
*
18573628 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACAGGGAATGAACTCCGTATGC
*
18573654 TTAGACAGGGAATGAGCTCCGTATGC
1 TTAGACAGGGAATGAACTCCGTATGC
18573680 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (26 bp):
TTAGACAGGGAATGAACTCCGTATGC
Found at i:18576279 original size:26 final size:26
Alignment explanation
Indices: 18576250--18576302 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18576240 CTGATCCGAT
*
18576250 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
18576276 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
18576302 C
1 C
18576303 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:18578057 original size:26 final size:26
Alignment explanation
Indices: 18578028--18578080 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18578018 CCGATCCAAT
* *
18578028 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
18578054 CTTAGACTGGGAATGATCACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
18578080 C
1 C
18578081 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:18578951 original size:26 final size:26
Alignment explanation
Indices: 18578922--18578974 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18578912 TCGGTCCAAT
*
18578922 CTTAGACTGGGAAGGAACTTCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
* *
18578948 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
18578974 C
1 C
18578975 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:18579820 original size:26 final size:26
Alignment explanation
Indices: 18579784--18579833 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
18579774 GGTCTGATGT
18579784 TAGACTAGGAATGAACTCCGTATGCC
1 TAGACTAGGAATGAACTCCGTATGCC
18579810 TAGACTAGGAATGAACTCCGTATG
1 TAGACTAGGAATGAACTCCGTATG
18579834 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCC
Found at i:18580147 original size:862 final size:863
Alignment explanation
Indices: 18577819--18580215 Score: 3019
Period size: 894 Copynumber: 2.7 Consensus size: 863
18577809 TTTGATGAGG
18577819 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCC
1 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-CACATCATGTGCGTACA-CCCCCC
* * *
18577884 GGCCCCTCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
64 -GACCCT-CGATCGTCGGAACCCCAACGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGG
* * * * *
18577949 TGCCCCGATGAAGAAAAAT-ATGACAGCAGCACATTCCTAAGCCTAGCATTTGCTGCCGCAACCC
127 TGCCCCGATGAAGAAAAATGA-GGCACCAGCACATGCCTAAGCCTAGCATGTGCT-CTGCAACCC
* * * *
18578013 TCGGTCCGATCCAATCTTAGACTGTGAATGAACTCCGTATGCTTAGACTGGGAATGATCACCGTA
190 TCGGTCTGGTCCAATCTTAGACTG-GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
** * * * *
18578078 TGCCTAAGTCAACCCATAAAACGAGCATGCGGGCACTCAACCTGCCAAAGGGGTGGGATGCGCAA
254 TGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGA-GGG-GGGATGCGCAA
* * ** * * * * *
18578143 GCCGAGGATCGATCGGGTCCCCCTCTGTGTACTGTCGATCCTGCTGCCGCAACCCTCAGTCCGGT
317 GCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGT
* * *
18578208 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGA----GCGGGCGG
382 CAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGG
*
18578269 GCGGGCACTATGCCGGCCAGAGAGACGAGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGG
447 GCGGGCACTATGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
18578334 TTTAGGCACATCTGCAGATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
512 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* ** * *
18578399 GTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCATGATTTTT
577 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCACGACTTTT
* *
18578464 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTGACAAACTTGGT
642 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGTCACAAACTTGGT
* * **
18578529 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTTTGCCAAAAAATCGAAGTGTACA
707 AGACGTGATCCTTGTAATTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAAATCGAAGTGTACA
** * * * * *
18578594 GGATTTTGCGACCATTTGAAAAAAGTATCCCGATTTTAGATACTTTAATGGCTACTAGCAGCAAA
772 ACATTTTGCGACCAATTGAAAAAAGTATCCCAATTTCAGACACTTTAATGGCTACTAGCAACAAA
18578659 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCAT
837 CCTGTAAAATCTCAAATGCTC---------------G-TCT----G--T
* * *
18578708 GATGAGAGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCGTCGACATCATGTGCGCACAC
1 GAT---AG---GGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCCACATCATGTGCGTACAC
* * * *
18578773 CCCCCGGCCCTCCCGATCGTCGGAACCTCAAGGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGC
59 CCCCCGACCCT--CGATCGTCGGAACCCCAACGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGC
* * * *
18578838 GACGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATG-CTCAAGCCTAGCATGTTCTGTCGC
122 GATGGTGCCCCGATGAAGAAAAATGAGGCACCAGCACATGCCT-AAGCCTAGCATGTGCTCT-GC
* * * *
18578902 AACCCCCGGT-TCGGTCCAATCTTAGACTGGGAAGGAACTTCGTATGCTTAGATTGGGAATGAAC
185 AACCCTCGGTCT-GGTCCAATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
** *
18578966 TCCGTATGCCTAAGTCAAAACACGAAACGAGCATGCGGGCGCTCAGCTGGCCAGAGGGGTAGGAT
248 TCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGG--GGAT
* * *
18579031 GCGCAAGTCGGGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCCTACTACCGCAACCCTCGG
311 GCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGG
* * * *
18579096 TCTGGTCCGATCTGAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAGCGGGC
376 TCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGGC
** *
18579161 GGGCGGGCGGGCACTATGCCAACCAGAGAGACGAGATGCAG-AAGCCGTGGACCGATAGGGTGGT
441 GGGCGGGCGGGCACTATGCCGGCCAGAGAGACGAGATGC-GCAAGCCGTGGATCGATAGGGTGGT
* *
18579225 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCG
505 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
** *
18579290 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTTAC
570 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCAC
** * * *
18579355 GACTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTT-GGAAGGAATTTTGTTCCCAA
635 GACTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGTCACAA
* *
18579419 ACTTGGTAGACGTGATCCTTGTAATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
700 ACTTGGTAGACGTGATCCTTGTAATTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAAATCGAA
* * *
18579484 GTGTACAACATTTTGTGACCAATTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGG
765 GTGTACAACATTTTGCGACCAATTGAAAAAAGTATCCCAATTTCAGACACTTTAATGGCTACTAG
*
18579549 CAACAAATCTGTAAAATCTCAAATGCTC-T-T-T
830 CAACAAACCTGTAAAATCTCAAATGCTCGTCTGT
* *
18579580 -ATAGGGGGCCAATATAA-GGCCAAGTACCAGCACCTATCATACATCATGTGCGTACA-CCCCCG
1 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-CACATCATGTGCGTACACCCCCCG
* * * *
18579642 ACCCT-GATTGTTGGAACCCCAACGCCGTCGATCAGGTTCTCCGACGATGCTCTGGCGATGGTGC
65 ACCCTCGATCGTCGGAACCCCAACGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC
* ** * * **
18579706 CGCGGCGAAGAAAAATGAGGCACCAGCACATGCCTGAGCCCAATATGTGCTACTGCAACCCTCGG
130 CCCGATGAAGAAAAATGAGGCACCAGCACATGCCTAAGCCTAGCATGTGCT-CTGCAACCCTCGG
** * * * *
18579771 TCTGGTCTGATGTTAGACTAGGAATGAACTCCGTATGCCTAGACTAGGAATGAACTCCGTATGGC
194 TCTGGTCCAATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * *
18579836 TAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGGGGGGATGCGTAAGCCGGG
258 TAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGGGATGCGCAAGCCGGG
* * ** * *
18579901 GAT-TAGCCGGGTCCCCCTCTCCGTGCTGCCGATTTTGCTACCACAATCCTCGGTCTGGTCAGAT
323 GATCGA-CCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCAGAT
*
18579965 CTTAGAGTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCGGG
387 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGA----GCGGGCGGGCGGG
* * *
18580030 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGACAGGGTGGTAGGTGGGT
448 CGGGCACTATGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
18580095 TTAGGCACATCTTCATATTTTTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGG
513 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
18580160 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCA
578 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCA
18580216 TGATTTTCTG
Statistics
Matches: 1320, Mismatches: 158, Indels: 87
0.84 0.10 0.06
Matches are distributed among these distances:
857 1 0.00
858 111 0.08
860 197 0.15
861 5 0.00
862 184 0.14
863 29 0.02
864 24 0.02
865 4 0.00
868 2 0.00
871 2 0.00
872 1 0.00
879 1 0.00
880 1 0.00
889 3 0.00
892 3 0.00
893 10 0.01
894 315 0.24
895 20 0.02
896 30 0.02
897 157 0.12
898 220 0.17
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (863 bp):
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCACATCATGTGCGTACACCCCCCGA
CCCTCGATCGTCGGAACCCCAACGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCC
CCGATGAAGAAAAATGAGGCACCAGCACATGCCTAAGCCTAGCATGTGCTCTGCAACCCTCGGTC
TGGTCCAATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
GTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGGGATGCGCAAGCCGGGGAT
CGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCAGATCTTA
GACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCGGGCACT
ATGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCACGACTTTTGAAACTTTT
TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGTCACAAACTTGGTAGACGTGAT
CCTTGTAATTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAAATCGAAGTGTACAACATTTTGC
GACCAATTGAAAAAAGTATCCCAATTTCAGACACTTTAATGGCTACTAGCAACAAACCTGTAAAA
TCTCAAATGCTCGTCTGT
Found at i:18581378 original size:26 final size:26
Alignment explanation
Indices: 18581349--18581401 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18581339 CCAGTCCGAT
*
18581349 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18581375 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18581401 C
1 C
18581402 CTAAGTCACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18582538 original size:26 final size:26
Alignment explanation
Indices: 18582502--18582557 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
18582492 CCGATCCGAT
* *
18582502 CTTAGTCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
18582528 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
18582554 CTTA
1 CTTA
18582558 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:18584335 original size:26 final size:26
Alignment explanation
Indices: 18584306--18584358 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18584296 CCGGTCCGAT
*
18584306 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18584332 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18584358 C
1 C
18584359 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18585239 original size:26 final size:26
Alignment explanation
Indices: 18585210--18585262 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18585200 CCGATTCAAT
*
18585210 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18585236 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18585262 C
1 C
18585263 CTAACTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18587824 original size:874 final size:872
Alignment explanation
Indices: 18582528--18591480 Score: 10203
Period size: 874 Copynumber: 10.1 Consensus size: 872
18582518 ACTCCATATG
* * * * * * * * *
18582528 CTTAGACTGGGAATAAACTCCATATGCTTAAGTCAACCCATGAAACCAGCGTACGTGCACTCATC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
18582593 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
** * * * ** *
18582658 TATTGACGCAACCCTCGATCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAA
131 TGCTGCCACAACCCTCGATCCGG-TCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18582723 CTGACGAAATGAGTGGGCAGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAA
195 CCGACGAAACGA----GCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* ***
18582788 GCCGTGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
256 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
18582853 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTGAAGCCTTCACGTG-AATTTTCATGGCAAGA
321 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT--CGTGTAAGTTTCATGGCAAGA
* * * ***
18582917 CGAATCGTTCTCTATTTTTCACAATTTTTGAAACTTTTTGCACATCGGGATTTTTTAAAATTTTT
384 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * *
18582982 TCGGAGGGTGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
449 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18583047 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCATTT
514 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
18583112 CAAACCCTTTAATGGCTACTGGCAGCACATCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
579 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* ** *
18583177 GTTCTCGAGGTTTGATGAGGGATAAGGCACCAATATAAGGGCCAAGTACCAGCACCCATCGCATA
644 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * * *
18583242 TCTTGTGTGCACACCCCCTCGGCCCCCCCGATTGTCGGAACCCCAATGTCGCCGGTCAAGTTCTC
709 TCATGTGCGCACACCCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * *
18583307 CGGCGACGCTCTGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCA
774 CGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
**
18583372 GCATGTGCTGGTGCAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTTCGTATT
839 GCATGTGCTGCCGCAA-CC-C--T-C-G---G----T---CT--G---G---TTCG-A-T
* * ** * *
18583432 CTTAGACTGGGAATGAAGTCCATATGCCTAAGTCAACCCATTAAACGAGCGTGCGAGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** * * * * * *
18583497 CGGCCAGAAGGGCAGGATGCACAAGTCGGGGATCGGCCAGGTCCCCCTCTACGCGTTGCCGATTC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * ** *
18583562 TGTTGCCACAACCCTTGATCCGGTCTGATCTTAGATTGGGAATGAACTCCAAACGCCTAAGCCAA
131 TGCTGCCACAACCCTCGATCCGGTC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18583627 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGA-TATGCCGGCCAGAGAGACGAGATGCGCAAGCC
195 CCGACGAAACGAGCAGGCGGGCGGGCGGGC-ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
18583691 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
18583756 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATG-GAGTTTCATGGCAAGACGA
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT--CGTGTAAGTTTCATGGCAAGACGA
* * * *
18583820 CTCGTTTTCTATTTTT-ATCAATTTTTGAAACATTTTGTGGTTTGGGATTTTTTAAAATTTTTTC
387 CTCGTTTTCTATTTTTCA-CGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
*
18583884 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
451 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
18583949 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCA
516 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
18584014 GACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
581 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
18584079 TCTTGAGGTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATC
646 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
18584144 ATGTGCGCACACCACCGCGGCCCCCCTGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCG
711 ATGTGCGCACACCCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * * *
18584209 ACGATGCTCTAGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGGCCGAGCCCAGC
776 GCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
18584274 ATGTGCTGTCGTAACCCTCGGTCCGGTCCGAT
841 ATGTGCTGCCGCAACCCTCGGTCTGGTTCGAT
18584306 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAACC
1 CTTAGACTGGGAATGAACTCCGTATGC-----CT---AA-G---T-CA-A--CC-----C--A-C
* * * * *
18584371 ATGAAACGAGCGTACGGGTGCTCAGTCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCA
42 --GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * **
18584436 GGTCCCCCTCTACATGCTGTCGATCTTGCT-ACAGCAACCCTCGATTTGGTCCAATCTTAGACTG
105 GGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCA-CAACCCTCGATCCGGT-CAATCTTAGACTG
* * * * *
18584500 GGAATAAACTCTGTATGCCTAAGCCAACCTATGAAACGAGTAGGCGGGCAGGTGGGCGGGCACTA
168 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGC----GGGCGGGCACTA
* ** * *
18584565 CGTCGGTTAGAGAGACGGGGTGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACA
229 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
18584630 TCTTCATATTTCAGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTGAC
294 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * * * *
18584695 CCATCACT-TGAAGTTTGATGGCAAGATGGCTCGTTTTCTATTTTTCACGATTTATGAAA-TGTT
359 CCTTC-GTGT-AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT-TT
** *
18584758 TTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTTGTAGACGTGA
421 TTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
18584823 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCACCTAAAAACTCGAAGTGTACAAGATTTTG
486 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
18584888 TGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAA
551 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * **
18584953 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGTGATAGGGGTTCAATATA
616 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * *
18585018 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCACCCTGGCCCCCCTAATCGTCG
681 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCTGATCGTCG
* * * * * * ** *
18585083 GAACCCCAATGTCGTCGATCAGGGTCTCCGACGATGCTCCGGCGATAGTGCCAAGATGAAGAAAA
746 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAA
*
18585148 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCTTCGGTCCGATTCAATCTT
811 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC--C--T-CG----------
*
18585213 AGACTGGGAATGAGCTCCGTAT
861 -GTCT-GG--T----T-CG-AT
* * * * *
18585235 GCTTAGACTTGGAATGAACTCCGTATGCCTAACTCGACCCATGAAACGAGCGTGCGGGCGCTCAA
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
18585300 CCGGCCAGAGGGGCGAGATGCGCAAGCTGGGGATCCG-CCGGGTCCCCCTGC-GCATGCTGTCGA
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT-CGATCGGGTCCCCCT-CTGCGTGCTGTCGA
** * * * *
18585363 TCCTGCTGCCGTAACCCTCGGTCTGGTCCAATGTTAGACTGGGAATGAACT-CGTATGACTAAGC
128 TCCTGCTGCCACAACCCTCGATCCGGT-CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
*
18585427 CAACCGACGAAACGAGCAGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
192 CAACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
18585492 CCGTGGATCGGTAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTGCATGCCAATGCCAT
257 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
18585557 TTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG-AAGTTTCATGGCAAGAC
322 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT--CGTGTAAGTTTCATGGCAAGAC
* ** * *
18585621 GACTCGTTTTCTATTTTTCATGATTTACGAAAATTTTTGCGGTTCTGGA-TTTTTAAAATTTTTT
385 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
18585685 TGGTAGGATTTTTGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
450 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* ** * *
18585750 AAATTCATCTAAAAAAACAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTC
515 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
18585815 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAG
580 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
18585880 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
645 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
18585945 CATGTGCGCACA-CCCCCCGGGCCCCCTGATCATCGGAGCCCCAACGCCGTCGGTCAGGTTCTTC
710 CATGTGCGCACACCCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
*** *** * * *
18586009 GATAATGCTCCAACGATGGTGCCCCAACGAAGAAAAATGAGGCACCAGCACATGCCTGAGCCCAG
775 GGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
18586074 CAAGTGCTGCCGCAACCCTTGGTCCGGTCCGGTCTGAT
840 CATGTGCTGCCGCAACCCTCGGTCTGGT----TC-GAT
*
18586112 CTTAAACTGGGAATGAACTCCGTACGCTTAGACTGGGAATAAACTTCATATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAA---C-T---C-----C---G-----------TATGCCTAAGTCAACCC
* * * * * *
18586177 ACGAAATGAGCGTGCGGGCTCTCAGCTGGCCAGAGGGGTGGGATGCGCCAGCCGGGGATCGGTCG
40 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * * ** * * * *
18586242 GGTCCCCCTTTGCGTGCTGCCAATCCTACTACTGCAACCCTCGGTTCGGTCTGATCTTAGCCTGG
105 GGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGATCCGGTC-AATCTTAGACTGG
*
18586307 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGACGGGCGGGCTGGCACTACGCC
169 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGG-CGGGCGGGCGGGCACTACGCC
* * * * *
18586371 GGCAAGAGAGGCGGGATGCGCAAGCCGTGGATGGATAGGATGGTAGGAGGGTTTAGGCACATCTT
233 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
18586436 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCCT
298 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * *
18586501 CGTGTGAAGTTTCATGGCAAGACGACTCGTTTTTTTATTTTTCATGATTTTTAAAACTTTTTACG
363 CGTGT-AAGTTTCATGGCAAGACGACTCG-TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCG
*** * * *
18586566 GTTCCTAATTTTTTAAAAGTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTT
426 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
18586631 GTATTTTCGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
491 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * * *
18586696 ATTTGAAAAAAATGTCCCCATTTGAGACACTTTAATGGCTACTGGCTGCAAACCTGTAATATCTC
556 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
18586761 ACATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
621 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
** * * *
18586826 CAAGCGCCAACACCCATCGCACATTATGTGCGCACA-CCCCCCGGCCCCCCTGATTGTCGGAACC
686 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCTGATCGTCGGAACC
* * ** * * *
18586890 CCAATGCTGTCGATCAGGTTCTCCTACGATGCTCTGGCGATGGTGCCCTGGCGAAGAAAAATGTG
751 CCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCG
* * *
18586955 ACACTC-GCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTTCGAT
816 GCAC-CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTCGAT
*
18587012 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * *
18587077 CGGCCAGAGGGGCGGGATGCACAAGCCAAGGATCAACCGGGTCCCCCTCTCCGTGCTG-CTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTC-GATC
** * * * * *
18587141 CTGCTGCCACGTCCTTTGATCCGGTGCAATTTTAGACTAGGAATGAACTCTGTATGCCTAAGCCA
130 CTGCTGCCACAACCCTCGATCCGGT-CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
18587206 ATCGACGAAACGAGCAGGCGGGCGGGCGGG-ACCTACGTCGGCCAGAGAGGCGGGATGCTCAAGC
194 ACCGACGAAACGAGCAGGCGGGCGGGCGGGCA-CTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * * *
18587270 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATACGTTCCAATGCCATT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
18587335 TTTATAGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCGTGTAATGTTTCATGGCAAGACGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTAA-GTTTCATGGCAAGACGA
* * *
18587400 CTCGTTTTCTATTTTTCACGATTTTTGAAACATTTTGTGGTTCGGGATTTTTTAAAATTTTTTTG
387 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* *
18587465 GAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATATTTGTTGGCATGCACAAAAAA
452 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
18587530 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTGGTAACCATTTGAAAAAAGTGTCCCCACTTCAG
517 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * * *
18587595 ACACTTTCATGGCTACTGGCCGCAAACCTGTTAAATCTCAAACGCTCTTTAAAGGGGTGTGAGTT
582 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
18587660 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGCACCAGCACCCATTGCACATCA
647 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
18587725 TGTGCGCACACCCCCCCGGCCCCCCTGATCGTCGGAACCCTAATGCCG-CTGGTCAGGTTCTCTG
712 TGTGCGCACACCCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCG
* * * * * *
18587789 GTGATGCTCTGGCGATGGTGACCCGACGAAGAAAAATGTGGCACCAGCATATGCCCAAGTCCAGC
776 GCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
*
18587854 ATGTGCTGCCGCAACCCTCGGTCTGGTCCGAT
841 ATGTGCTGCCGCAACCCTCGGTCTGGTTCGAT
** * * *
18587886 CTTAGACTATGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCAGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
18587951 CAGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * ** * * * *
18588016 TACTACTGCAGCCCTCGGTCCAGTCTAATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGATCCGGTC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
18588081 CAGATGAAATGAGCGGGCGGGCGGGAGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
195 CCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
18588146 TGGATCGATAGGGTGGCAGGTGGGTTTAGGGAAATCTTCATATTTCTGCATGCCAATGCGATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
18588211 TATGGCTTGTAAATTCATACAATTGTCCCTTAGGCCTTCGTGTGAAGTTTCATGGCAAGATGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGT-AAGTTTCATGGCAAGACGACT
* * *
18588276 TGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCCGTTCGAGATTTTTTAAAATTTTTTCGGA
389 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
** * *
18588341 AGGAGTTTCAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAGACAT
454 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
18588406 TCAGATAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGAC
519 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
18588471 ACTTTAATGGCTACTGGTAGCAAACTTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
584 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
18588536 CGAGGTTTGATGAGGGATA-GGGGCCAATATTAGGGCCGAGCACCAGCACCCATTGCACATCATG
649 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* *
18588600 TACGCACACCCCCCCGACCCCCCGACCCCCC-GATCG-CTGGAACCCCAATGCCGCCGGTCAGGT
714 TGCGCACACCCCCCCG-------G-CCCCCCTGATCGTC-GGAACCCCAATGCCGTCGGTCAGGT
* * ** * *
18588663 TCTTCGGCGATGCTCTGACGATGGTGCGTCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAG
770 TCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* *
18588728 CCCAGCATGTGTTGCCATG-ACCCTCGGTCTGGTTCGATCTTAGATTGGGAATGAACTCCGTAT
835 CCCAGCATGTGCTGCC--GCAACC-C--TC--G---G-TC------T-GG--T----T-CG-AT
* * * * *
18588791 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCTACCCAGGAAATGAGCGTGCGGACACTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * *
18588856 CCGGCCAGAGGGGTGAGATGCATAAGCCGGGGATCGATCGTGTCCCCTTCTGCATGCTGTCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATC
* ** * * *
18588921 CTACTGCTGCAAACCTC-AGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCC
130 CTGCTGCCACAACCCTCGA-TCCGGT-CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
18588985 AACCGACGAAACGAGCGGGCGGGCGGGCAGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGAT
193 AACCGACGAAACGA----GCAGGC--G--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
*
18589050 GCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
250 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
*
18589115 ATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGG
315 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGT-AAGTTTCATGG
* * * *
18589180 CAAGACGACTCATTTTTCTTTTTTTCATGATTTTTGAAACTTTTTGCGATTCGGGATTTTTTAAA
379 CAAGACGACTC-GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAA
* * ** * *
18589245 ATTTTTTCGGAAGGCA-TTTTGGGCCCAAAATTTTTTGACATGATCCTTGTATTTTTGTTGGCAT
443 ATTTTTTCGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * *
18589309 GCACAAAAAAATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTC
507 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * * * * *
18589374 CCCATTTTAGACACTTTCATGGCTACTGGCAGCAACCCTGTTAAATCTCAAATTCTCTTCAAGGG
572 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
18589439 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCA
637 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
** * * * * *
18589504 TTACAGATCATGTGTGCACA-CCCCCCGGCCCCCCCGATCG-CTGAAACCCCAATGCCGCCGGTC
702 TCGCACATCATGTGCGCACACCCCCCCGGCCCCCCTGATCGTC-GGAACCCCAATGCCGTCGGTC
* * * * *
18589567 AGGTTCTCCAGCGATGCTCCGGTGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCC
766 AGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* *
18589632 CGAGCCCAGCATATGCTGCAGCAACCCTCGGTCTGG-TCTGAT
831 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTC-GAT
* * * ** *
18589674 CCTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCAACGAAACGAATGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18589739 CGGCCAGAGGGGTGGAATGCGCAAGCCGGGGATCGGTCGGG--GCCC-C--C-T-CTG-C-A---
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * *
18589792 TGCTGCCGCAACCCTCCG-TCCAGTCCAATCATT-GACTGGGAATGAACTCCCTATGCCTAAGCC
131 TGCTGCCACAACCCT-CGATCCGGT-CAATC-TTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
18589855 AACCGACAAAACGAGCA--------GGCGGGCACTATGCTGGCCAAAGAGACGGGATGCGCAAGC
193 AACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* ** * * * *
18589912 TGTGGATAAATACGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTACGTGCCAATGCCATT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * **
18589977 TTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG-AAGTTTCATTGCAAGGTG
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT--CGTGTAAGTTTCATGGCAAGACG
* * * ** *
18590041 ACTTGTTTTCTATTTTTCAAGATTTTTTATTCATTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
386 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
* *
18590106 GGAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCA-AAAAA
451 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * *
18590170 AAGTTCAACTAAAAACTCTAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTGC
516 AA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * * *
18590235 AGACACTTTAATGCCTACTAGTAGCAAACCTATAAAATCTCAAATAG-TTTTTAAGGGGGTGTGA
580 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT-GCTCTTTAAGGGGGTGTGA
* *
18590299 GTTCTCGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAATTACCAGCACCCATCGCACA
644 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
18590364 TCATGTACGCACACACCCCCGG-CCCCCTCGATCGTCGGAACCCCAATGCCGTCAGTCAAGTTCT
709 TCATGTGCGCACACCCCCCCGGCCCCCCT-GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * ** * *
18590428 CCGGCAATGCTCTGGCGATGTTGCCCCGGGGAAGAAAAATGCGACACCAACACATGCCCGAGCCC
773 CCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *
18590493 AGCATGAGCTGCCGTAACCCTCGGTCTGG-TCTGAT
838 AGCATGTGCTGCCGCAACCCTCGGTCTGGTTC-GAT
18590528 CTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCTGTATTCCTAAGTCATCCC
1 CTTAGACTGGGAATGAACTCCGTATGC-----C------T-AA----G---T-C--A---A-CCC
* * * * * *
18590593 ACGAAATGAACGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATTCGTAAGTCGGGGATCGATCG
40 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * * *
18590658 GGTCCCCCTCTACATGTTG-CTGATCCTGTTGCTGA-AACCCTCGATCCGGTCTGATCTTAGACT
105 GGTCCCCCTCTGCGTGCTGTC-GATCCTGCTGC-CACAACCCTCGATCCGGTC-AATCTTAGACT
* * *
18590721 GGGAATAAACTCCGTATGCCTAAGCCAATCGACGAAAC--G-A-GCGGGCGGGCGAGCACTACGC
167 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGC
* * * * *
18590782 CAGCCAGAGAGACGGGATCCGTAAG-CGATGGATCGATGGGGTGGTAGGTGGGTTTAGGCATATC
232 CGGCCAGAGAGACGGGATGCGCAAGCCG-TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
18590846 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGAAAATTCACACAATGGTCCCTTAAGCC
296 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
18590911 TTCACGTG-ACGTTTCATGGTAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTG
361 TT--CGTGTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG
*
18590975 CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCC
424 CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * *
18591040 TTGTATTTTTTTTTGGCATGCACAAAAAAATTGAGCTAAAAACTTGAAGTGTATAAGATTTTGTG
489 TTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * * *
18591105 ACCATTTTAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAATT
553 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* ** *
18591170 TTCAAATGCTCTTTAATCGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCCAATATAAG
618 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * *
18591234 GGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACACCCCCACGG-CCCCC-GATCATCAGA
683 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCTGATCGTCGGA
* * * * *
18591297 ACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGTTGGTGCCCCGACGAAGAAAATT
748 ACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAAT
* * * * * *
18591362 GTGGCACCAGCACATTCCCGAGCCCAGCATGTTCTGCGGCAACCCTCAGTCCGG-TCTGAT
813 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTC-GAT
* * * ** *
18591422 TTTAGACTAGGAATGAACTCCGTATGCCTAAGGCAACTGACGAAATGAGCAG-GCGGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-GTGCGGGCG
18591481 GGCGGGTGGT
Statistics
Matches: 6907, Mismatches: 901, Indels: 518
0.83 0.11 0.06
Matches are distributed among these distances:
852 7 0.00
853 286 0.04
854 296 0.04
855 1 0.00
856 4 0.00
859 1 0.00
865 1 0.00
866 4 0.00
868 18 0.00
869 2 0.00
870 64 0.01
871 3 0.00
872 1 0.00
873 363 0.05
874 1054 0.15
875 11 0.00
876 20 0.00
877 4 0.00
878 5 0.00
879 7 0.00
880 159 0.02
881 12 0.00
882 101 0.01
883 7 0.00
884 5 0.00
885 2 0.00
886 3 0.00
887 6 0.00
888 3 0.00
889 4 0.00
890 5 0.00
891 9 0.00
892 59 0.01
893 2 0.00
894 138 0.02
895 4 0.00
896 309 0.04
897 255 0.04
898 276 0.04
899 198 0.03
900 743 0.11
901 12 0.00
902 129 0.02
903 227 0.03
904 894 0.13
905 386 0.06
906 177 0.03
907 11 0.00
908 100 0.01
909 3 0.00
910 6 0.00
912 1 0.00
914 167 0.02
915 254 0.04
916 47 0.01
917 1 0.00
918 1 0.00
920 2 0.00
921 2 0.00
922 2 0.00
923 1 0.00
925 2 0.00
928 2 0.00
929 2 0.00
930 26 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (872 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGATCCGGTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGAT
GCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTGCCGCAACCCTCGGTCTGGTTCGAT
Found at i:18588802 original size:26 final size:26
Alignment explanation
Indices: 18588766--18588818 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18588756 CTGGTTCGAT
*
18588766 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18588792 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18588818 C
1 C
18588819 CTAAGTCTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18590564 original size:26 final size:26
Alignment explanation
Indices: 18590528--18590578 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18590518 CTGGTCTGAT
*
18590528 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
18590554 CTTAAACTGGGAATGAACTCTGTAT
1 CTTAAACTGGGAATGAACTCCGTAT
18590579 TCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:18593429 original size:26 final size:26
Alignment explanation
Indices: 18593400--18593451 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18593390 CCTATCCGAT
18593400 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18593426 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18593452 GCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18594301 original size:26 final size:26
Alignment explanation
Indices: 18594272--18594324 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18594262 CTGGTCCGAT
18594272 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
18594298 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18594324 C
1 C
18594325 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18596072 original size:26 final size:26
Alignment explanation
Indices: 18596033--18596085 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18596023 CTGATCCAAT
18596033 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
18596059 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
18596085 C
1 C
18596086 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:18597430 original size:894 final size:895
Alignment explanation
Indices: 18591757--18597856 Score: 7271
Period size: 893 Copynumber: 6.9 Consensus size: 895
18591747 GCAAGTCAGG
* * * * * * * *
18591757 GATCGGTCGGGTCCCCCTCTGTGTGCTATCGATACTACTGTCGCA-AACCTCAGTCTAGTCTGAT
1 GATCGGCCAGGTCCCCCTCTGCGTGCTA-CGATCCTACT-ACGCATACCCTCAGTCTGGTCCGAT
* *
18591821 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACG-AGCGGGGCGAACGGGCG
64 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAGC---G-GAA---GCG
* * *
18591885 GGCGGGCATTACGCCGGCCAGAGAGACGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGG
122 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
18591950 GATTAGGCACATCTTCAAATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
187 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTATAAATTCATACAAT
* * *
18592015 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGATTTT
252 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * *
18592080 TGAAACTTTTTACGGTTCAGGATTTTTTACAATTTTTTCAGAAGGA-TTTGTGGCCCCAAACTTG
317 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT-TGGCCCCAAACTTG
*
18592144 GTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
381 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
* * * * * * *
18592209 CAAGATTTTGTGACCATTCGAAAAAAGTTTCTCTATTTCAGACACTTTAATGGTTACTGCCAGCA
446 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACA
* * *
18592274 AACCTGTAAAATCTCAAATGATTTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
511 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
18592339 GGCCGATATAAGGGCCAAGTACCACCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCC
576 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* * * ** *
18592404 CCGATCGTGGGAACCCTAATGTCGTCGGTCAGGTTCT-C--C-A-G---C---GATGATGCCCCG
641 CCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCG
* * ** *
18592458 ACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTATCACAACC-C--T-TG-
706 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCAGTCTGT
* * *
18592518 --G-T-TCAG--T---CTG-A-T-C-TA-G----GACTGGGAATGAACTCCGTATCCCTAAGTCA
771 CCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * ** *
18592565 ACCCACGAAACGAGTGTGTGGGCACTCAGCCGGCTAGAGGGGCAGGATGCACAAGTTGGG
836 ACCCACAAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGAGGCGGGATGCACAAGCCGGA
* * * ** ** * * * *
18592625 GATCGACC-GAGTCCCCCTCTGCTTGCTGTCGATTTTGTTGCTGCA-ACCCTCGGTCTGATCTGA
1 GATCGGCCAG-GTCCCCCTCTGCGTGCT-ACGATCCTACTAC-GCATACCCTCAGTCTGGTCCGA
* * * * * *
18592688 TCTTACACTTGGAATGAACTCCGTATGCCAAAGCCAACCGACGAGATG-AGCGG--GCGAGCGGG
63 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAGCGGAAGCGGGCGGG
* * * *
18592750 TACT-CGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATAGATAGGGTGGTAAGTGGGTTTAG
128 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *** ** *
18592814 GCATATCTTCATATTTCTATGTGCCAATGCCATTTTTATGAATTGTAAATTCATACAATGGTCCC
193 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCC
* *
18592879 TTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAAC
258 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * ** *
18592944 TTTTTATGGTTCGGGATATTTGAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACA
323 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * ** *
18593009 TGATCTTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAATGTCAAACTGTACAAGATT
388 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
* * *
18593074 TTGTGACCATGTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTTT
453 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGT
*
18593139 AAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
518 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
18593204 ATAAGGGCCAAGTACCAGTACCTATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCC-ATT
583 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGCCCCCCCGA-T
* * * *
18593268 CGTCGGAACCCCAATGCCGCCTGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAA
646 CGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAA
* ** * * *
18593333 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCATAGCCTTCGGTCCTATCCG
711 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC-TCAGT-CTGTCCG
* *
18593398 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGGCTAAGTCAAC
774 ATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
** ** * *
18593463 CCATGAAATAAGCGTGCGGGCGCTCAGCCGGCCAGAG-GAGCGGGATGCGCAAGCCAGG-
838 CCACAAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGAG-GCGGGATGCACAAGCC-GGA
* * * * * * * **
18593521 GATCGGTCAGGCCCCCCTCTGCGTGCTACCGATCTTGCTGCTGCA-ACCCTCGGTCCGGTCTAAT
1 GATCGGCCAGGTCCCCCTCTGCGTGCTA-CGATCCTACTAC-GCATACCCTCAGTCTGGTCCGAT
* * * * * **
18593585 CTTAGATTGGGAATTAACTTCATATGCCTAAGCCAACCGACGAACCG-AGCGG--GCGGATGGGC
64 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAGCGGAAGCGGGCGGGC
* * * *
18593647 ACTACGCCGACGAGAGAGACGGGATGCGCAAGCCGTGGTTGGATAGGGTGGTAGGTGGGTTTAGG
129 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
18593712 CACATCTTCATATTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
194 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCT
* * **
18593777 TAAGCCTTCACGTGAAGTTTCATGGCTAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
259 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * ** *
18593842 TTTTGCGGTTCGGGGTTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTATTAGATGT
324 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * * *
18593906 GATCCTTGTATTTTTGTTGGAATGCACAAAAAAATTCAGCTAGAAACTCGAAGTGTACAACATTT
389 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTT
* * *
18593971 TGTGACCATTTGAAAAAAGTGTCCCCTTTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTA
454 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTA
* * *
18594036 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTCGGTGAGGGATAGGGGGCCAATA
519 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * * * *
18594101 TAAGGGCCAAGTACCAGCACCAATCCCACATCATGTACGCACACCCCCTCTTGGTCCCTCCGATT
584 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-C-CGGCCCCCCCGATC
* * *
18594166 GCCGAAACCCTAATGCCACCGGTCA---------G-G-T--T-C--------T---CCGACGAAG
647 GTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAG
* * *
18594206 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAGCCCTCGGTCTGGTCCGA
712 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA-ACCTCAGTCT-GTCCGA
*
18594271 TCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
775 TCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * * *
18594336 CACAAAACAAGCGTGCGGGTGCTCAGCCGGCCAGAGCGACGGGATACACAAGTCGGG
839 CACAAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGAGGCGGGATGCACAAGCCGGA
* * * *
18594393 GATCGGCCAGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGTCGCA-ACCCTCAGTCCGGTCCGAT
1 GATCGGCCAGGTCCCCCTCTGCGTGCT-ACGATCCTACT-ACGCATACCCTCAGTCTGGTCCGAT
* * * *
18594457 CTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCGACGAAATGAGCGGGCGGAAGGGCGGG
64 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---AGCGGAA--GCGGG
* * * * * * *
18594522 CGGGCACTATGCCGACGAGAGACACGGGATGCGCAAGCCGTGGTTGGATAGGGTGGTAGGTAGGT
124 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
18594587 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATGTTTATGGCTTGTAAATTCATACAATGG
189 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGG
*
18594652 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTG
254 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
18594717 AAA-TTTTTGCGGTTCGGGGTTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
319 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
*
18594780 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCGAAAAACTCAAAGTGTACAA
384 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAA
* * *
18594845 GATTTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAGTGGCTACTGGCAACAAA
449 GA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAA
* *
18594910 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTCAAGGTTTGATGAGGGATAGGGGG
513 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
18594975 CCAATATAATGGCCAAGTACCAGCACCAATCGGACATCATGAGCGCACACCCCCCTTTCGGCCCC
578 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC---CGGCCCC
18595040 CCCGATCG-CTGGAACCCCAATGCCACCGGTCAGG---T-------T-CTCCGGTGATGGTGCCC
640 CCCGATCGTC-GGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCC
* * ***
18595093 CGACGAAGAAAAATACGGCCCCAGCACATGCCCGAGCCCAGCATGTGCAATCGCAACC-C--TC-
704 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCAGTCT
18595154 G---G----T---CTGG--T---CT---TAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGT
769 GTCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
** ** * *
18595200 CAACCCACAAAACGAGCGT-ACGATGCTCAACCGGCCAGAGAGGCGGGATGCACAAGCCGGG
834 CAACCCACAAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGAGGCGGGATGCACAAGCCGGA
* * * * * *
18595261 GATCGGTCAGGTCCCCCTCTGCGTGCTACCGATCTTACTATCGCAT-CCCTCAATTTGATCAGAT
1 GATCGGCCAGGTCCCCCTCTGCGTGCTA-CGATCCTACTA-CGCATACCCTCAGTCTGGTCCGAT
* ** *
18595325 CTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAACCGACGAAACGAACGGGCGGGCGGTGGGG
64 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAA---GC-GGAAG-CGGG
*
18595390 CGGGCACTACGCCGGCCAGAGAGACGGGAT-CGGCAAGCTGTGGATCGATAGGGTGGTAGGTGGG
124 CGGGCACTACGCCGGCCAGAGAGACGGGATGC-GCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
18595454 TTTAGGCATATCTTAATATTTCTACATGCCAATGCCATTTTTATGGCTTATAAATTCAAACAATG
188 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTATAAATTCATACAATG
*
18595519 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
253 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
18595584 AAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTCTGACCCTAAACTTGGT
318 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
18595649 --A-G-G---CATG-A-TTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACA
383 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
* *** * * * *
18595705 AGATTTTGTGACCATTTGATAAAAGTGTTTTCGTTTCAGACACTTTAATGGCAACTGGCAGCGAA
448 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAA
* *
18595770 CCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGG
513 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* ** * *
18595835 CCAATATAAGGGCCAAGTACCAGTACCCATTACACATCGTGTGTGCACA-CCCCCCGGCCCCCCC
578 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
* * *
18595899 GATCGTCGGAACCCCAATGCTACTGGTCAGGTTCTCCGGCGATG-TCCGGTGATGGTGCCCTGAC
643 GATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGAC
* * *
18595963 GAAGAAAAATGCGGCAACAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCTTCGGTCTGAT
708 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC-TCAGTCTG-T
* *
18596028 CCAATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
771 CCGATCTTAGACTG-GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
18596093 AACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCGGTATGCGCAAGCC-GA
835 AACCCACAAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGAGGCGGGATGCACAAGCCGGA
* * ** * * * * * *
18596153 GGATCGACCGGGTCCCCCTCTATGTGCTGCTGATCCTGCTAC-CGTAACCATCACTCTGGTCCAA
1 -GATCGGCCAGGTCCCCCTCTGCGTGCTAC-GATCCTACTACGCAT-ACCCTCAGTCTGGTCCGA
*
18596217 TCTTAGACTGGGAATGAACACCGTATGCCTAAGCCAACCGACGAAACGAACGGGCAGGCAAGCGG
63 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAA---GC-GG-AAGCGG
* * *
18596282 GCTGGCACTACGCTGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
123 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*** * *
18596347 TTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTAATGGCTTATAAATTCATAAAATG
188 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTATAAATTCATACAATG
*
18596412 GTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
253 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
18596477 GAAACTTTTTACGGTTTGGGATTTTTTAAAATTCTTTCGGAAGGAGTGTTGGGCCCAAACTTGGT
318 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
18596542 AGATGTGATACTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCCAAAAACTCAAAGTGTACA
383 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
*
18596607 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAACAAA
448 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAA
* ** *
18596672 CCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTTTGTTCTCGAGGTCTGATGAGGGATAGGGGG
513 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
18596737 CCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
578 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
* * * * *
18596802 GATCGTCGGAACCCAAATGCCACCGGTCAGGTTCT-CGGTGATGCTCCGATGATGGTGCCTCAAC
643 GATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGAC
* * * *
18596866 GAAGAAAAATGTGGCACCAGCACATGCCCGAGGCCAGCATGTGCTACCGTAATCCTCAGTCCTGT
708 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCTCAGT-CTGT
* * * *
18596931 CTGATTTTAGACTCGGAATGAACTCCGTATGCTTACACTGGGAAATGAACTCCGTATCCCTAAGT
771 CCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGG-AATGAACTCCGTATGCCTAAGT
* *
18596996 CAACCCACAAAATGAGCGTGTGGGCGCTCAGCCGGCCAGAGAGGCGGGATGCGCAAGCCGGA
834 CAACCCACAAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGAGGCGGGATGCACAAGCCGGA
* * * *
18597058 GATCGGCCAGGTCCCTCTCTGCATGCTACGATCCTACTAC-CATAGCCCTC-GTTTGGTTCGATC
1 GATCGGCCAGGTCCCCCTCTGCGTGCTACGATCCTACTACGCATA-CCCTCAGTCTGGTCCGATC
*
18597121 TTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAA-C-G-AGCGGGCGGGCA
65 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAGCGGAAGCGGGCGGGCA
* *
18597183 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGCTAGGTGGGTTTAGGC
130 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
18597248 ACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGTCCCTT
195 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTT
* *
18597313 AAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTA-TTTTCTATGATTTTTGAAACT
260 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC-ACGATTTTTGAAACT
* * *
18597377 TTTTGCAGTTCGGGATATTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
324 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
18597442 GATCCTTGTATTTCTGTTGGCATGCACAAAACAATTCAGCTAAAAAC-CTGAAGTGTACAAGATT
389 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-AAAGTGTACAAGATT
* *
18597506 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC-AGAAACCTAT
453 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGT
* *
18597570 AAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAAT
518 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * *
18597635 ATAAGGGCCAAGTATCAGCACCCATCGCACATCATGTGCGCACACCCCAACTGG-GCCCCGGATC
583 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCGGCCCCCCCGATC
*** * * * * *
18597699 GTCGGAACCCCAATGCCGTTGATTAGGTTCTCCGGCGATGCTCCGGCGGTGGTGCCCCGACGGAG
647 GTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAG
* * * * *
18597764 AAAAAAGTGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCCACAACC-CTAGGTCCGATCCG
712 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTC-A-GTCTG-TCCG
18597828 ATCTTAGACTGGGAATGAACTCCGTATGC
774 ATCTTAGACT-GGAATGAACTCCGTATGC
18597857 CTAAGCCAAC
Statistics
Matches: 4539, Mismatches: 529, Indels: 302
0.85 0.10 0.06
Matches are distributed among these distances:
856 37 0.01
857 1 0.00
858 454 0.10
859 56 0.01
860 153 0.03
861 48 0.01
862 1 0.00
863 4 0.00
864 2 0.00
865 1 0.00
866 70 0.02
867 6 0.00
868 403 0.09
869 75 0.02
870 95 0.02
871 5 0.00
872 266 0.06
873 6 0.00
874 1 0.00
875 1 0.00
876 6 0.00
878 2 0.00
879 124 0.03
880 362 0.08
881 35 0.01
882 5 0.00
883 4 0.00
884 2 0.00
885 1 0.00
886 2 0.00
887 3 0.00
888 4 0.00
889 2 0.00
890 1 0.00
891 9 0.00
892 56 0.01
893 523 0.12
894 459 0.10
895 52 0.01
896 431 0.09
897 229 0.05
898 2 0.00
900 3 0.00
901 1 0.00
902 265 0.06
903 166 0.04
904 103 0.02
905 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
GATCGGCCAGGTCCCCCTCTGCGTGCTACGATCCTACTACGCATACCCTCAGTCTGGTCCGATCT
TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAGCGGAAGCGGGCGGGCAC
TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
TTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCG
GAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAA
ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCAGTCTGTCCGATCTTAG
ACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAA
CGAGCGTGTGGGCGCTCAGCCGGCCAGAGAGGCGGGATGCACAAGCCGGA
Found at i:18599471 original size:26 final size:26
Alignment explanation
Indices: 18599442--18599494 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18599432 CCGGTTCAAT
*
18599442 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18599468 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18599494 C
1 C
18599495 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:18599967 original size:900 final size:899
Alignment explanation
Indices: 18597827--18600617 Score: 4301
Period size: 900 Copynumber: 3.1 Consensus size: 899
18597817 GGTCCGATCC
*
18597827 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCAGGCGAGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G-G-GC
*
18597892 GGGCGGGCACTACG-CTGGCCAGAGAAACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGT
62 GGGCGGGCACTACGTC-GGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
18597956 GGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTAATGGCTTATAAATTCATAAA
126 GGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
18598021 ATGGTCCCTTAGGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCATGATT
191 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * *
18598086 TTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTCTTTCGGAAGGAGTTTTGGCCCCAAACTT
256 TTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
18598151 GGTAGATGTGATACTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCCAAAAACTCAAAGTGT
321 GGTAGATGTGATACTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCCAAAAACTCAAAGTGT
* * * *
18598216 ATAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAAACACTTTAATGGCTACTGACAAC
386 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGC
* * ** *
18598281 AAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTTTGTTCTCGAGGTCTGATGAGGGATAGG
451 AAACCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
18598346 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCC
516 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* ** * * * *
18598411 CCGATCGTCGGAACCCAAATGCCGCCGGTCAAGTTCT-CGGCGATGCTCCGATGATGGTGCCTCA
581 CCGATCATCGGAACCCAAATGCCGTAGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCG
* * * *
18598475 ACAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAATCCTCAGTCCT
646 ACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCG
* * * * *
18598540 GTCCGATTTTAAACTCGGAATGAACTCCGTATGCTTATACTGGGAATGAACTCCGTATGCCTAAG
711 GTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * * *
18598605 TCAACCCACAAAATGAGCGTGCGGGCGTTCAACCGGCTAGAGAGG-CGGGATGCGCAAGCCGGAG
776 TCAACCCACAAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAG-GGATGGGATGCGTAAGCCGAAG
* ** * ** *
18598669 ATCGGCC-AGGTCCCTCTCTGCATGCTG-TTATCCTACTGCCACAACCTTCAG-TCTGGTAC-
840 ATCGGCCGA-GTCCCACTCTGCATGCTGCCGATCCTACTACCGTAACCCTCAGTTC-GGT-CT
* * ** *
18598728 CATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCTGACTGACGAAACGAGC---C-GGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * * ** * * *
18598789 GGGCACTACGTTGGCTAGAGAGACAAGATGCGCAAGCCATGGATCGATAGGGTGATAAGTGGGTT
66 GGGCACTACGTCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
18598854 TAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
18598919 CCCTTAAGCCTTCACGTGAATTTTGATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
*
18598984 AACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
261 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
18599049 ATGTGATACTTTTATTTTTGTTGGCATGCAAAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAG
326 ATGTGATACTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCCAAAAACTCAAAGTGTACAAG
*
18599114 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACC
18599179 TGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
456 TGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
18599244 AATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGA
* * * *
18599309 TCACCAGAACCCAAATGTCGTAGGTCAGGTTCTCCGACGATGCTTCGACGATGGTGCCTCGACGA
585 TCATCGGAACCCAAATGCCGTAGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGACGA
* * * *
18599374 AGAAAAATACAGCACCAGCACATGCCGGAGCTCAGCATGTGCTGTCGTAACCCTCAGTCCGGTTC
650 AGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTTC
* *
18599439 AATCTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTTAA
715 GATCTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *
18599504 CCCATAAAACGAGCGTACGGCCGCTCAGCTGGCCAGAGGGATGGGATGTGTAAGTCGAAGATCGA
780 CCCACAAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGATGGGATGCGTAAGCCGAAGATCGG
18599569 CCGAGTCCCACTCTGCATGCTGCCGATCCTACTACCGTAACCCTCAGTTCGGTCT
845 CCGAGTCCCACTCTGCATGCTGCCGATCCTACTACCGTAACCCTCAGTTCGGTCT
*
18599624 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
18599689 GGGCACTACGTCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGTCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* ** *
18599754 TAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTATATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
18599819 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTATGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * ** *
18599884 AACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGACTTTTGAACCCAACCTTGGTAG
261 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
18599949 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAG
326 ATGTGATACTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCCAAAAACTCAAAGTGTACAAG
*
18600014 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTGGCAGCAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACC
*
18600079 TGTAAAATCTCAAATGCTTTTTAAGCGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
456 TGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
18600144 AATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCTCGAT
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
*
18600209 CATCGGAACCCAAATGCCGTAGGTCAGGTTCTCCGACGATGCTGCGACGATGGTGCCTCGACGAA
586 CATCGGAACCCAAATGCCGTAGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGACGAA
* * *
18600274 GAAAAATACAGCACCAGCACATGCCCGATCCCAGCATGTGCTGCCGCAACCCTCAGTCTGATTCG
651 GAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTTCG
18600339 ATCTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAAC
716 ATCTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * *
18600404 CCACAAAACGAGTGTGTGGGCGCTCAGCTGGCCAGAGGGATGGGATGCGTAAGCCGAAGATCGGT
781 CCACAAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGATGGGATGCGTAAGCCGAAGATCGGC
* * * * *
18600469 CGGGTCCCCCTCTGCATGCTGCCGATCCTACTACCGTTACCCTCAATTTGGT-T
846 CGAGTCCCACTCTGCATGCTGCCGATCCTACTACCGTAACCCTCAGTTCGGTCT
18600522 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
1 -GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
*
18600587 CGGGCACTACGTCGGCCAGAGAGACGGGATG
65 CGGGCACTACGTCGGCCAGAGAAACGGGATG
18600618 TCCCCATTTG
Statistics
Matches: 1716, Mismatches: 161, Indels: 28
0.90 0.08 0.01
Matches are distributed among these distances:
893 470 0.27
894 46 0.03
895 210 0.12
896 69 0.04
897 2 0.00
898 2 0.00
899 396 0.23
900 474 0.28
901 47 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (899 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
GGGCACTACGTCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
ATGTGATACTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCCAAAAACTCAAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
CATCGGAACCCAAATGCCGTAGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGACGAA
GAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTTCG
ATCTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACAAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGATGGGATGCGTAAGCCGAAGATCGGC
CGAGTCCCACTCTGCATGCTGCCGATCCTACTACCGTAACCCTCAGTTCGGTCT
Found at i:18600377 original size:26 final size:26
Alignment explanation
Indices: 18600341--18600393 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18600331 CTGATTCGAT
*
18600341 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18600367 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18600393 C
1 C
18600394 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:18600968 original size:26 final size:26
Alignment explanation
Indices: 18600939--18600991 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18600929 CCGGTCTGAT
*
18600939 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18600965 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18600991 C
1 C
18600992 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18601861 original size:26 final size:26
Alignment explanation
Indices: 18601832--18601881 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18601822 CTGATCCGAT
* *
18601832 CTTAGACTGGGAATGAACTCTGTAAG
1 CTTAGACTGGGAAGGAACTATGTAAG
18601858 CTTAGACTGGGAAGGAACTATGTA
1 CTTAGACTGGGAAGGAACTATGTA
18601882 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTATGTAAG
Found at i:18602000 original size:893 final size:889
Alignment explanation
Indices: 18600621--18602954 Score: 3124
Period size: 893 Copynumber: 2.6 Consensus size: 889
18600611 CGGGATGTCC
* *
18600621 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGTAGACCTGTAAAATC
1 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT-GCTACTAGCAGCAAACCTGTAAAATC
* *
18600686 TCAAATGCCCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
65 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * *
18600751 GCCAAGTACCAGCACCCATGGCACATCATTTGCACACACCCCCCTGG-CCACCCGATCGT-TAGA
130 GCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCC-GGCCCCCCCGATCGTCT-GA
*
18600814 ACCCTAATGCCGTCAGTCAGGTTCTCCGACGAAGCTCC-AGCGATGGTGCCCCGACGAAGAAAAA
193 ACCCTAATGCCGTCGGTCAGGTTCTCCG-C-AAGCTCCGA-C-ATGGTGCCCCGACGAAGAAAAA
* ** * *
18600878 TGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCTGATCTTA
254 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCAGGTCCGATCTTA
*
18600943 GACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
319 GACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACT-TGTATGCCTAAGTCAACCCACGA
* * * * * *
18601008 AACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGAGTC
383 AACGAGTGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAACGGGTC
* *
18601073 CTCGTCTACGTGCTA-TCGATCCTGCTGCCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAA
448 C-CCTCTACGTGCTACT-GATCCTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAA
* *
18601137 TGAACTCC-AATGCCTAAGCCAACCGACGAAACGAGCGGGCCGACGGGCACTACGTTGGCCAGAG
511 TGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCCGACGGGCACTACGTTGGCCAGAG
* *
18601201 AGACGGGATGTGTAAGCCATCGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
576 AGACGGGACGTGCAAGCCATCGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* *
18601266 TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAA
641 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
** * *
18601331 GTTTCATGGCAAGACGACTCATTTTCTATTTTTCA-TGATTTTCAAAACTTTTTGCGGTTCGGGA
706 GTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAAATTTT-AAAACTTTTTACGGTTCGAGA
* * * * *
18601395 TTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCATTTTTTTTTT
770 TTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCACAAACTTGGTAGACATGATCATTGTATTTTT
* *
18601460 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC-AAATTTTGTGA
835 GTTGGCATGCACAAAAAAATTCAGATAAAAACTCAAAGTGTACAAAATTTTGTGA
* * * *
18601514 CCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATAGCTATTGGAAGCAAACCTGTAAAATC
1 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT-GCTACTAGCAGCAAACCTGTAAAATC
* * *
18601579 TCAAATTG-TCTTTAAGGGGGTGTGAGTTCTCAAGGTCTGATGAGGGATAGAGGGCCAATATAAG
65 TCAAA-TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
18601643 GGCCAAGTACCAGCACCCATTGCACATCATGTGCACACACCCCCCGGCCCCCCCAATCGTCTGAA
129 GGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGTCTGAA
* *
18601708 CCCCAATGCCATCGGTCAGGTTCTCCGGCAATGCTCCGACAATGGTGCCCCGACGAAGAAAAATG
194 CCCTAATGCCGTCGGTCAGGTTCTCC-GCAA-GCTCCGAC-ATGGTGCCCCGACGAAGAAAAATG
* *** * * * *
18601773 TGGCACCAGCACATGCTAAAGCCTAGCATGTGCTGTCGCAACCCTCGGTCTGATCCGATCTTAGA
256 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCAGGTCCGATCTTAGA
* *
18601838 CTGGGAATGAACTCTGTAAGCTTAGACTGGGAAGGAACTATGTATGCCTAAGTCAACCCACGAAA
321 CTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACT-TGTATGCCTAAGTCAACCCACGAAA
* * * **
18601903 CGAGTGTGCGAGCGCTCAGTCGGCCAGAGTGCCGGGATGCGCAAGCCGGGGATCGGTCGGGTTCC
385 CGAGTGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAACGGG-TCC
* ** ** *
18601968 CCTCTACGTGCTACTGATCCTACTATCACAACCCTCGATTTGGTCTGATCTTAGACTGGGAATAA
449 CCTCTACGTGCTACTGATCCTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGA
* * * ** * *
18602033 ACTCCGTATGCCTAAGCCAACTGACAAAACGAGCGGACGGGTGGGTACTACGTTGGCCAGAGAGG
514 ACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCCGACGGGCACTACGTTGGCCAGAGAGA
* * * * * *
18602098 CGGGACGTGCAAGCTATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTTTGC
579 CGGGACGTGCAAGCCATCGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
18602163 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTT
644 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* *
18602228 TCATGGCAAGACGACTCGTTTTCTATTTTTCACAAATTTTGAAACTTTTTACGGTTCGAGATTTT
709 TCATGGCAAGACGACTCATTTTCTATTTTTCACAAATTTTAAAACTTTTTACGGTTCGAGATTTT
* * ** * *
18602293 TTAAAATTTTTTCGGATGGATTTTTAGTGACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
774 TTAAAATTTTTTCGGAAGGAGTTTTAGCCACAAACTTGGTAGACATGATCATTGTATTTTTGTTG
* *
18602358 GCGTGCATAAAAAAATTCAGATAAAAACTCAAAGTGTACAAAATTTTGTGA
839 GCATGCACAAAAAAATTCAGATAAAAACTCAAAGTGTACAAAATTTTGTGA
* * * *
18602409 CCATTTGAAAAAAATGTCCCCATATCAAACACTTTAATGCCTACTCGCAGCAAACCTGTAAAATC
1 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG-CTACTAGCAGCAAACCTGTAAAATC
*
18602474 TCAAATGCTCTTTAAGGGAGG-GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAG
65 TCAAATGCTCTTTAAGGG-GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
18602538 GGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAA
129 GGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGTCTGAA
* * * *
18602603 CCCTAATGGCGCCGGTTAGGTTC-CC-CAA----CG--ATGGTGCCCCGACGAAGAAAAATACGG
194 CCCTAATGCCGTCGGTCAGGTTCTCCGCAAGCTCCGACATGGTGCCCCGACGAAGAAAAATGCGG
* *
18602660 CACCAGCACCTGCCCGAGCCCAACATGTGCTGTCGTAACCCTCGGTCAGGTCCGATCTTAGACTG
259 CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCAGGTCCGATCTTAGACTG
* * * *
18602725 GGAAAGAACTCCGTATGCTTAGA-TAGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATG
324 GGAATGAACTCTGTATGCTTAGACT-GGGAATGAACTT-GTATGCCTAAGTCAACCCACGAAACG
* * * * * * * *
18602789 A-TCATGC-AGACACTTAGCCGACCATAGGGGTGGGATGCGTAAGCCGGGGATCGAAAGGGTCCC
387 AGT-GTGCGAG-CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAACGGGTCCC
* ** * * * * * *
18602852 ACTCTATGTGCTACCAATCCTGCTGCCGCAACCTTCGGTCCAGTCCGATCTTAGACTAGGAATGA
450 -CTCTACGTGCTACTGATCCTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGA
*
18602917 ACTCCGTATGCCTAAGCCAACCGATAAAACGAGCGGGC
514 ACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGC
18602955 AGGCGGATGG
Statistics
Matches: 1258, Mismatches: 164, Indels: 47
0.86 0.11 0.03
Matches are distributed among these distances:
883 9 0.01
884 260 0.21
887 2 0.00
892 7 0.01
893 449 0.36
894 325 0.26
895 204 0.16
896 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGCTACTAGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGTCTGAACC
CTAATGCCGTCGGTCAGGTTCTCCGCAAGCTCCGACATGGTGCCCCGACGAAGAAAAATGCGGCA
CCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCAGGTCCGATCTTAGACTGGG
AATGAACTCTGTATGCTTAGACTGGGAATGAACTTGTATGCCTAAGTCAACCCACGAAACGAGTG
TGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAACGGGTCCCCTCTAC
GTGCTACTGATCCTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGCCAACCGACAAAACGAGCGGGCCGACGGGCACTACGTTGGCCAGAGAGACGGGACG
TGCAAGCCATCGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
AAGACGACTCATTTTCTATTTTTCACAAATTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAAT
TTTTTCGGAAGGAGTTTTAGCCACAAACTTGGTAGACATGATCATTGTATTTTTGTTGGCATGCA
CAAAAAAATTCAGATAAAAACTCAAAGTGTACAAAATTTTGTGA
Found at i:18602745 original size:26 final size:26
Alignment explanation
Indices: 18602716--18602768 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18602706 CAGGTCCGAT
18602716 CTTAGACT-GGGAAAGAACTCCGTATG
1 CTTAGA-TAGGGAAAGAACTCCGTATG
* *
18602742 CTTAGATAGGGAATGAACTTCGTATG
1 CTTAGATAGGGAAAGAACTCCGTATG
18602768 C
1 C
18602769 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGATAGGGAAAGAACTCCGTATG
Found at i:18604102 original size:26 final size:26
Alignment explanation
Indices: 18604066--18604118 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18604056 CTGGTCCAAT
18604066 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18604092 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18604118 C
1 C
18604119 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18605914 original size:26 final size:26
Alignment explanation
Indices: 18605863--18605915 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18605853 CTGGTCCGAT
** *
18605863 CTTAGACGGGGAATGAACTCTATATG
1 CTTAGACCAGGAATGAACTCCATATG
*
18605889 CTTAGACCAGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCATATG
18605915 C
1 C
18605916 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCATATG
Found at i:18606297 original size:901 final size:894
Alignment explanation
Indices: 18603302--18606775 Score: 4694
Period size: 895 Copynumber: 3.9 Consensus size: 894
18603292 GAACCCCAAT
* * * **
18603302 GTCCCCCTCTGCGTGCTGCCAATCCTCCTACTGCAACCCTCAATCCGGTTTGATCTTAGACTGGG
1 GTCCCCCTCTGCGTGCTGCCAATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGG
* * * * *
18603367 AATGAACTCTGTATGCCTAAGCCAACCGACGAAACGTGCAATCGGGCGGGCGCTACGTCGACCAG
66 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAAGCGGGCGGGCACTACGTCGGCCAG
* * *
18603432 AGATACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATT
131 AGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * * * * *
18603497 TCTGCATTCCGATGCCATTTTTATGGCTTGTAAATTCATACAGTCGTCCCTTAAGCCTTCACGTG
196 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGGCCCTTAAGCCTTCACGTG
* * *
18603562 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGGTTTGT-GAAACTTTTTACGGTTCAA
261 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT-TCAAAACTTTTTACGGTTCGA
* *
18603626 GATTTTTTAAAATTTTTTTCGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
325 GATTTTTGAAAA-TTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * *
18603691 TTGTTGGCATGCACAAAAAAATTCAGCTTAAAACTGGAAGTGCACAAGATTTTGTGACCATTTGA
389 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
18603756 AAAATGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCGGCAAACCTGTAAAATCTCAAATGC
454 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
18603821 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGTGCCAAGTA
519 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * * *
18603886 CCAGCACCCATCACACATCATGTGCGCACACCCCCCC-GCCCCATCGATTGCCAAAACCCTAATG
584 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCTCGATCGTCAGAACCCCAATG
* * * * *
18603950 CCGCCGGTCAGGTTCTCCGGTGATACTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
649 CCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCA
* *
18604015 GCACTTGCCCGAGCCTAGCATGTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAAT
714 GCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAAT
* ** *
18604080 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTG
779 GAACTCCATATGCTTAGACCAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * * *
18604145 CGGGCGCTCAACCGGCCAGAGGGGCGAGATGCA-CAAGTCGGGGATTGATCGG
844 CGGGCGCTCAA-CGGCCAGAAGGGTGGGATG-AGCAAGTCGAGGATCGGTCGG
* * * * * *
18604197 GTCCCCCTCTACGTGCCGCCAATCCTACTACCACAACCCTCGATCTGGTCCAATCTTAGACTGGG
1 GTCCCCCTCTGCGTGCTGCCAATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGG
* * * *
18604262 AATGAACTCCATATGCCTCAGCCAACCGACGAAACGAGCAAGCGGGCGGGCACTACGCCGTCCAG
66 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAAGCGGGCGGGCACTACGTCGGCCAG
18604327 AGAGAC-GTGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
131 AGAGACAG-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * * * *
18604391 TTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTAATAAAATGGTCCCTTAAGCCTTCACCT
195 TTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGGCCCTTAAGCCTTCACGT
* * *
18604456 AAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGG-TCCA
260 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGA
* * * *
18604520 GGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTCGTAGACGTGATCCCTGTATT
325 -GATTTTTGAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * *
18604585 TTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTG
388 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
18604650 AAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
453 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
18604715 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
518 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* *
18604780 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAAGGGCCCCC-CAATCGTCGGAACCCC
583 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC---GGCCCCCTCGATCGTCAGAACCCC
* * * *
18604844 AATGCCGCCGGCCAGGTTCT-C--C-A-------GCGATGGTGCCCCGACGAAGAAAAATGCAGC
645 AATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGC
* * * * * *
18604898 ACCAACACATGCCCGTGCCTAGCATGTGCTGCCGTAACCCTCGGTCTGATCCGATCATAGACTGG
710 ACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGG
* * *
18604963 GAATGAACTCCATATACTTAGA-CTGGAAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGA
775 GAATGAACTCCATATGCTTAGACCAGG-AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * *
18605027 GCGGGCGGGCACTCAACTGGCCA-AAGGGGTGGGATGCGCAAGTCGACGATCAGTCGG
839 GCGTGCGGGCGCTCAAC-GGCCAGAA-GGGTGGGATGAGCAAGTCGAGGATCGGTCGG
* * * * * * * * *
18605084 GTCCCCCTCTGCATGCTGCCGATCTTGCCACCGCAACCCTTGGTCTGGTCTGATCTCAGACTGGG
1 GTCCCCCTCTGCGTGCTGCCAATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGG
* *** * **
18605149 AATGAACTCCTTATGCCTCTTCCAATCGACGAAACGAGCGGGCGGGCGGGCGGGAGGGCACTACG
66 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCAAGCGGGC----GGGCACTACG
* *
18605214 TCGGCTAGAGAGACAGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
123 TCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* ** *
18605279 TTCATATTTCTGTGTGCTTATGCCATTTTTATGGCTTGTAAATTCATACAATGGGCCCTTGAGCC
188 TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGGCCCTTAAGCC
* *
18605344 TTCACGTGAAGTTTCATGGCAAGATGACTGGTTTTCTATTTTTCATGATTTTCAAAACTTTTTAC
253 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTAC
* *
18605409 GGTTCGAGATTTTTGAAAATTTTTTCGATAGGAGTTTTGGCCCCAAACATGGTAGACATGATCCT
318 GGTTCGAGATTTTTGAAAATTTTTTCGA-AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * * *
18605474 TCTATTTGTGTTGGCATGCACAAAAAAATTCAACTAAAAATTCGAAGTGTACAAGATTTTGTGAC
382 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
18605539 CTTTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
447 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * * *
18605603 CAAATGCACTTTAAGAGGGTGTGAGTTCTTGAGGTTTGATGAGGGGTAGGGGGCCAATATAAGGG
512 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * *
18605668 CCATGTACCAGCAACCATTGCACATCATGTGCACACACCCCCCCCGGCCCCCTCGATCGTCAGAA
577 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCTCGATCGTCAGAA
* * *
18605733 CCCCAATGCCGCCAATCAGGTTCTCCGACGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATA
641 CCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATA
* * *
18605798 CGGCACCAGCACATGCCCAAGCCCAAGCCTAGCATGTGCTGTCGTAACCCTCGGTCTGGTCCGAT
706 CGGCACCAGCACATGCCC--G----AGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCAAT
* *
18605863 CTTAGACGGGGAATGAACTCTATATGCTTAGACCAGGAATGAACTCCGTATGCCTAAGTCAACCC
765 CTTAGACTGGGAATGAACTCCATATGCTTAGACCAGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * *
18605928 ATGAAACGAGAGTACGGGCGCTCAGTCGGTCAGAAGGGTGGGATGAGCAAGCCGAGGATCGGTTG
830 ACGAAACGAGCGTGCGGGCGCTCA-ACGGCCAGAAGGGTGGGATGAGCAAGTCGAGGATCGGTCG
18605993 G
894 G
* * * * *
18605994 GT-CACCTCTGCGTACTGCCAATCCTGCTACTGCAACTCTCGATCCGGTCCGATATTAGACTGGG
1 GTCCCCCTCTGCGTGCTGCCAATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGG
* **
18606058 AAAGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG-CTGGCCA
66 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAAGCGGGCGGGCACTACGTC-GGCCA
* * * * *
18606122 GAGAGACAGGATGCGCAAGCTGTTGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTAAAAT
130 GAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
18606187 TTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGGCCTTTAAGCCTTCACGT
195 TTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGGCCCTTAAGCCTTCACGT
* * * * *
18606252 GAAGTTTCATGGCAAGGCAACTGGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGG
260 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGA
*
18606317 GATTTTTGAAAATTTGTTCGATAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
325 GATTTTTGAAAATTTTTTCGA-AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * * *
18606382 TTGTTGGCATGCATAAAAATATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCTTTTGA
389 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
18606447 AAAAAGTCTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
454 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
18606512 TCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCTAATATAGGGGCCAAGTA
519 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * *
18606577 CCAGCACCCATCGCACATCTTGTGCGCACA--CCCCCAGCCCCCCCGATCGTCCA-AACCCCAAT
584 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCTCGATCGT-CAGAACCCCAAT
* * * * * * *
18606639 GCCGTCAGTCAGGTTCTCTGGCGATGCTCCAGTGATGGTGCCCCGATGAAGAAAAATACTGCCCC
648 GCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACC
* * * * *
18606704 AGCAGATGCTCGAGCCTAGCATGTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAT
713 AGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAA
18606769 TGAACTC
778 TGAACTC
18606776 TGTATGCCTA
Statistics
Matches: 2277, Mismatches: 254, Indels: 98
0.87 0.10 0.04
Matches are distributed among these distances:
886 4 0.00
887 267 0.12
891 8 0.00
892 7 0.00
893 84 0.04
894 167 0.07
895 863 0.38
896 5 0.00
897 3 0.00
898 29 0.01
899 96 0.04
900 3 0.00
901 312 0.14
902 149 0.07
904 41 0.02
905 10 0.00
906 1 0.00
909 79 0.03
910 143 0.06
911 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
GTCCCCCTCTGCGTGCTGCCAATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAAGCGGGCGGGCACTACGTCGGCCAG
AGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGGCCCTTAAGCCTTCACGTG
AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAG
ATTTTTGAAAATTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
AGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCTCGATCGTCAGAACCCCAATGCC
GCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGC
ACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGA
ACTCCATATGCTTAGACCAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
GGCGCTCAACGGCCAGAAGGGTGGGATGAGCAAGTCGAGGATCGGTCGG
Found at i:18606816 original size:4 final size:4
Alignment explanation
Indices: 18606807--18606841 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
18606797 GAAACGAGCA
* *
18606807 GGCG GGCG GGCG GGCG GACG GGCG GGCG TGCG GGC
1 GGCG GGCG GGCG GGCG GGCG GGCG GGCG GGCG GGC
18606842 ACTACGTCGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.03, C:0.26, G:0.69, T:0.03
Consensus pattern (4 bp):
GGCG
Found at i:18607506 original size:26 final size:26
Alignment explanation
Indices: 18607457--18607507 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
18607447 CAGTCTGATC
*
18607457 TTAGACGAGGAATGAACGCTGTATGG
1 TTAGACGAGGAATGAACGCCGTATGG
*
18607483 TTAGACTG-GGAATGAACTCCGTATG
1 TTAGAC-GAGGAATGAACGCCGTATG
18607508 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.25
Consensus pattern (26 bp):
TTAGACGAGGAATGAACGCCGTATGG
Found at i:18609383 original size:717 final size:715
Alignment explanation
Indices: 18607624--18609814 Score: 3351
Period size: 714 Copynumber: 3.1 Consensus size: 715
18607614 CTACCGTAAC
* * *
18607624 CCTTGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAAC-AAA--A
1 CCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA
* * *
18607686 -CGAGCGGGCAGACGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
66 GCGAGCGGGTAGGCGGGCGGG-ACTACGC-CGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* **
18607750 TAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGCATGCCAATGATATTTTTATGGCTT
129 TAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * * *
18607815 GTAAATTCATACAATGGTCCCTTAAGCTTTCACATGAAGTTTCATGGCAAAACGACTCATTTTCT
194 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * ** * **
18607880 TTTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTT
259 ATTTTTCACGATTTTCGTAACTTTTTTTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGTTGTTT
** * * * *
18607945 TAACCCCAAACATTGTTGACGTGATCCTTGCATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAA
324 TGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
18608010 AAACTCAAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
389 AAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
18608075 GGCTGCTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTT
454 GGCTGCTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTT
* *
18608140 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCGCACATAATGT-CGCACA
519 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * *
18608204 CCCCCCCCGGCGCCTCCGATCATCGGAACCCCAAGGCCGTCGGTCAGGTTCTTCGACGATGCTCC
584 -CCCCCCCGGC-CCACCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCC
* * *
18608269 GACGA-GGTTCCCCGGTGAAGAAAAATGTGGCTCCAGCACATGCCCGAGCCCAGCATGTGCTGCC
647 GGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
18608333 GCAA
712 GCAA
* *
18608337 CCCTTGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATG
1 -CCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATG
* * * * *
18608402 AGCGGGCGGGTTGGCGGGC---ACTATGCCGGCTAGAGAGACGAGATGCGCAAGCCGTGGATCGA
65 AGCGAGCGGGTAGGCGGGCGGGACTACGCC-GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
** *
18608464 TAGGGTGGTAGGTGAATTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
129 TAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* *
18608529 GTAAATTCATACAATGGTCCCCTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
194 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
18608594 ATTTTTCACGATTTTCGTAACTTTTTTTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGTTGTTT
259 ATTTTTCACGATTTTCGTAACTTTTTTTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGTTGTTT
18608659 TGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
324 TGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
18608724 AAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
389 AAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * * * * *
18608789 GACTACCGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
454 GGCTGCTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTT
*
18608854 GATGAGGGATAGCGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
519 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
*
18608919 CCCCCCCGGCCCACCGATCGTC-GAACCCCAATGCCGCCGGTCAGCTTCTCCGGCGATGCTCCGG
584 CCCCCCCGGCCCACCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGG
* * *
18608983 CGATGGTGCCCCGGTGAAGAAAAAAGTGGCACCAGCACATGCCCGAGCCCAGCACGTGCTGCCCC
649 CGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
18609048 AA
714 AA
* * *
18609050 CCTTCGGTCCTGTCCGATCTTAGACTGGGAATGAACCCCTTATGCCTAAGCCAACCGACGAAATG
1 CCTT-GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATG
* * * * *
18609115 AGTGAGCGGGTGGGCGGGCGGGTACTACGCCGATCAGAGAGATGGGATGCGCAAGCAGTGGATCG
65 AGCGAGCGGGTAGGCGGGCGGG-ACTACGCCG-CCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* ** *
18609180 ATAGGGTGGTAGGTGGGCTTAGGAACATCTTCATATTTCTGCATGCCAATGCCAAATTTGTGGCT
128 ATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* *
18609245 TGTAAATTAATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
193 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
18609310 TATTTTTCACGATTTTCGTAACTTTTTTTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGTTGTT
258 TATTTTTCACGATTTTCGTAACTTTTTTTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGTTGTT
18609375 TTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
323 TTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
18609440 AAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
388 AAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
18609505 TGGCTGCTGGCAGCAAACCTGTACAATCTCAAAAGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTT
453 TGGCTGCTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTT
18609570 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
518 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * *
18609635 AACCCCCCCGGCCCCCCGATCGTCGGAACCCTAATGCCGCTGGTCAGGTTGTCCGGCGATGCTCC
583 -ACCCCCCCGGCCCACCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCC
* * * * *
18609700 GGTGATGGTGCCCCCGAG-GAAGAAAAATGCGGCACCAGCAAATGCCCGAGCCTAGCATGTGCTA
647 GGCGATGGTG-CCCCG-GTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
*
18609764 CCGTAA
710 CCGCAA
* * *
18609770 CCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGC
1 -CCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
18609815 TTAGACTGGG
Statistics
Matches: 1342, Mismatches: 117, Indels: 30
0.90 0.08 0.02
Matches are distributed among these distances:
712 43 0.03
713 140 0.10
714 511 0.38
715 9 0.01
716 1 0.00
717 470 0.35
718 35 0.03
719 45 0.03
720 84 0.06
721 4 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (715 bp):
CCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA
GCGAGCGGGTAGGCGGGCGGGACTACGCCGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
GGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCACGATTTTCGTAACTTTTTTTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGTTGTTTTG
GCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
AATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTGCTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCCGGCCCACCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCG
ATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
Found at i:18610721 original size:26 final size:26
Alignment explanation
Indices: 18610685--18610737 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18610675 TCTAGCTGAT
18610685 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTATGTATG
*
18610711 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTATGTATG
18610737 C
1 C
18610738 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTATGTATG
Found at i:18611467 original size:26 final size:26
Alignment explanation
Indices: 18611428--18611480 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18611418 CCAGTCTGAT
18611428 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
* * *
18611454 CTTAGATTGGGAATGATCTTCGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
18611480 C
1 C
18611481 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTTCGTATG
Found at i:18611483 original size:743 final size:739
Alignment explanation
Indices: 18609973--18611512 Score: 2268
Period size: 743 Copynumber: 2.1 Consensus size: 739
18609963 CTGGTCTGAT
* * *
18609973 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAATGAGCGGGAGGGC-AGGCGG
1 CTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGAGGCGG
* * * * *
18610037 GCACTATGCCTGCTAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTAGTAGGTGGGTTTA
66 ACACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTAGTAGGTGGGTTTA
* * *
18610102 GGCATATCTTCATATTTCTCTATTCCAATGCCATTTTTGTGCTTGTAAATTCATACAATGGTCCC
131 GGCACATCTTCATATTTCTCTATGCCAATGCCACTTTTGTGCTTGTAAATTCATACAATGGTCCC
18610167 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * **
18610232 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGACCCAAAATTCATAGATG
261 TTTTTACAGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGACCCAAAATTCATAGATG
* * * *
18610297 TGATCCTTGCATTTTTGTTGGGATGCATAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATT
326 TGATCCTTGCATTTTTGTTGGCATGCACAAAAAAATGCAGCTAAAAACTCGAAGTGTACAAGATT
*
18610362 TTGTGACCATTTGAAACAAATGTCCCCATTTCATACACTTTAATGGCTACTGGCAGCAAACCTGT
391 TTGTGACCATTTGAAACAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
18610427 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
* ** * *
18610492 ATAAGGGTCAAGTACCAGCACCCATTGCACATCATGCGCGCGCACCCCCCGGCCCCCGTGATAGT
521 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGCGCGCACACCCCCCGGCCCCCGTGATAGC
* ** **
18610557 CGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTAGCGGTGGTGCCCCGGTGAAGAA
586 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTAGCGGTGGTGCCCCGGCAAAGAA
* * *
18610622 AAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGCTGATCT
651 AAATGCAGCACCAGCACATGCCCGAGCCCAGCATGGGCTGCCACAACCCTCGGTCCAGCTGATCT
*
18610687 TAGACTGGGAATGAACTATGTATG
716 TAGACTGAGAATGAACTATGTATG
* *
18610711 CTTAGACTGGGAATGAAC-TCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGAGG
1 CTTAGATTGGGAATGAACTTC-GTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGC--GA-G
* * * *
18610775 GCGGACGCTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
62 GCGGACACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTAGTAGGTGGG
* * * *
18610840 TTTTGGTACATCTTCATATTTCTGTGTGCCAATGCCACTTTTGTGGCTTGTAAATTCATACAATG
127 TTTAGGCACATCTTCATATTTCTCTATGCCAATGCCACTTTTGT-GCTTGTAAATTCATACAATG
* * * *
18610905 GTCCCTTAAGCTTTCACGTGAAGTTTCATTGCAAGACGACTTGTTTTCTATTTTTTACGATTTTT
191 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * **
18610970 GAAACTTTTTACAGTTTGGGATTTTTTAAAATTTTTTCAGAAGG-TGTTTTGGCCCCAAACTTGG
256 GAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAT-TTTTGGACCCAAAATTCA
*
18611034 TAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATGCAGCTAAAAACTCGAAGTGTAC
320 TAGATGTGATCCTTGCATTTTTGTTGGCATGCACAAAAAAATGCAGCTAAAAACTCGAAGTGTAC
*
18611099 AAGATTTTGTGACCATTTGAAA-AAAGTGTGCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
385 AAGATTTTGTGACCATTTGAAACAAA-TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
18611163 AACCTGTAAAATCTCAATTGCTCTTTAAGGGGGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
449 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
* * *
18611228 GGCCAATATAATGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTGGCCCCC-
514 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGCGCGCACACCCCCCGGCCCCCG
* * *
18611292 TGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT-TCG-GTGATGGTGCCCC
579 TGATAGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTAGCG-G-TGGTGCCCC
* ** *
18611355 GGCAAAGTAAAATGTGGGACCAGCACATGCCCGAGCCCAGCATGGGCTGCCACAACCCTCGGTCC
642 GGCAAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGGGCTGCCACAACCCTCGGTCC
18611420 AGTCTGATCTTAGACTGAGAATGAACT-TCGTATG
707 AG-CTGATCTTAGACTGAGAATGAACTAT-GTATG
* ** * *
18611454 CTTAGATTGGGAATGATCTTCGTATGCCTAAGTTAACCCACGAAATGAGCGTGCGGGCG
1 CTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCG
18611513 CTCAGTCGGC
Statistics
Matches: 714, Mismatches: 75, Indels: 23
0.88 0.09 0.03
Matches are distributed among these distances:
737 1 0.00
738 51 0.07
740 1 0.00
741 5 0.01
742 207 0.29
743 447 0.63
744 2 0.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (739 bp):
CTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGAGGCGG
ACACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTAGTAGGTGGGTTTA
GGCACATCTTCATATTTCTCTATGCCAATGCCACTTTTGTGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
TTTTTACAGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGACCCAAAATTCATAGATG
TGATCCTTGCATTTTTGTTGGCATGCACAAAAAAATGCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAACAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCACACATCATGCGCGCACACCCCCCGGCCCCCGTGATAGC
CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTAGCGGTGGTGCCCCGGCAAAGAA
AAATGCAGCACCAGCACATGCCCGAGCCCAGCATGGGCTGCCACAACCCTCGGTCCAGCTGATCT
TAGACTGAGAATGAACTATGTATG
Found at i:18611973 original size:890 final size:860
Alignment explanation
Indices: 18610711--18613089 Score: 3103
Period size: 890 Copynumber: 2.7 Consensus size: 860
18610701 ACTATGTATG
* * *
18610711 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGAGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGAC-AAA--A-CGAGCGGGC----GGG
18610776 CGGACGCTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
58 C--A--CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * ** * *
18610841 TTTGGTACATCTTCATATTTCTGTGTGCCAATGCCACTTTTGTGGCTTGTAAATTCATACAATGG
119 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * *
18610906 TCCCTTAAGCTTTCACGTGAAGTTTCATTGCAAGACGACTTGTTTTCTATTTTTTACGATTTTTG
184 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* *
18610971 AAACTTTTTACAGTTTGGGATTTTTTAAAATTTTTTCAGAAGG-TGTTTTGGCCCCAAACTTGGT
249 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAT-TTTTGGCCCCAAACTTGGT
* * * * *
18611035 AGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATGCAGCTAAAAACTCGAAGTGTACA
313 AGACGTGATCCTTGTATTTTTATTGGCATGCTC-AAAAAATTCAGCTAAAAACTAGAAGTGTACA
*
18611100 AGATTTTGTGACCATTTGAAAAAAGTGTGCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
377 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
18611165 CCTGTAAAATCTCAATTGCTCTTTAAGGGGGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
442 CCTGTAAAATCTCAA-TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
18611230 CCAATATAATGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTGGCCCCCTGA
506 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCGA
* * *** * * *
18611295 TCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTTCGGTGATGGTGCCCCGGCAA
571 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCAACGATAGTGCCCAGACAA
* * * *
18611360 AGTAAAATGTGGGACCAGCACATGCCCGAGCCCAGCATGGGCTGCCACAACCCTCGGTCCAGTCT
636 AGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGGGCTGCCACAACCCTCGGTCCAGTCC
* *
18611425 GATCTTAGACTGAGAATGAACTTCGTATGCTTAGATTGGGAATGATCTTCGTATGCCTAAGTTAA
701 GATC-T----T-----TG-AC-T-G---G---A-AAT--GAA--ATC-TC-TATGCCTAAGTCAA
* * * * *
18611490 CCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGTAGGATGCGCAGGTCGGGGATCGA
740 CCCACGAAACGACCGTACGGGCGCTCAGTCGGCCAGAGGGG-AGGATGCCCAAGTCGGGGATCGA
* ** * * *
18611555 CCGGGTCCCCTTCTGTGTGCTACCAATTCTGCTATCGCAA-CCTTCGGTCCGATCCAAT
804 CCGGGTCCCCCTCTGCATGCTACCAATCCTGC-ACCGCAACCCTT-GATCCGATCCAAT
* * *
18611613 GTTAGACTTGGAATGAACTCCGTATGCCTAAACCAATCGACAAAACGAGCGGGCGGGCACTACGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACAAAACGAGCGGGCGGGCACTACGC
* * *
18611678 CAGCCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCT
66 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
18611743 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCT
131 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
18611808 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
196 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
* * *
18611873 GTTCGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTCGTAGACATGATCCTT
261 GTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
*
18611938 GTATTTTTATTGGCATGCTCAAAAAATCTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACC
326 GTATTTTTATTGGCATGCTCAAAAAAT-TCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACC
*
18612003 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGACTACTGGCAGCAAACCTGTAAAATCTC
390 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * *
18612068 AGATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGGTGAAGGATAGGGGGCCAATATAAGGGC
455 A-ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * *
18612133 CGAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGGAACCC
519 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTGGCCCCCCGATCGTCGGAACCC
* * * *
18612198 CAATGTCGTCGGTCAAGTTCTCCGACGATGCTCCAACGATAGTGCCTAGACGAAGAAAAATGAGG
583 CAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCAACGATAGTGCCCAGACAAAGAAAAATGAGG
** * ** **
18612263 CACCAGCACATGCCCGAGCGTAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTTGACTG
648 CACCAGCACATGCCCGAGCCCAGCATGGGCTGCCACAACCCTCGGTCCAGTCCGATCTTTGACTG
* * *
18612328 GAAATGAACTCTCTATGCCTAAGTCAACCCACGAAACGACCGTATGGGTGCTCAGTCGGCCAGAG
713 GAAATGAAATCTCTATGCCTAAGTCAACCCACGAAACGACCGTACGGGCGCTCAGTCGGCCAGAG
* * * ** *
18612393 GGGCGGCTGCCCAAGTCGGTGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCCTGCACCGCAA
778 GGGAGGATGCCCAAGTCGGGGATCGACCGGGTCCCCCTCTGCATGCTACCAATCCTGCACCGCAA
* * ***
18612458 CCCTTGATCTGGTTTGAT
843 CCCTTGATCCGATCCAAT
* * * ** *
18612476 CTTATACTGGGAATGAACTCCTTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGAACTACGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACAAAACGAGCGGGCGGGCACTACGC
* * * *
18612541 CGGCCAGAGAGACGGGATGCACAATCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCT
66 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
18612606 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
131 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * ** *
18612671 TCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTCAAAACTTTTAACG
196 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
** * * *
18612736 GTTCGGGA-TTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTAATCCTT
261 GTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * * * *
18612800 GTATTTTTTTTGGCGTGCATAAAAAAAATTCAGCTAAAAACTAAAAGTGTACAAGATTTTGTAAC
326 GTATTTTTATTGGCATGC-T-CAAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGAC
* **
18612865 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAATTTGTAAAATCT
389 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
18612930 CAAATGCTCTCTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
454 C-AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * *
18612995 CCAAGTACCAGCACCCATCGCACATCATGTGCAG-ACA-CTCCTCGGCCCCCCGATCATCAGAAC
518 CCAAGTACCAGCACCCATCGCACATCATGTGC-GCACACCCCCT-GGCCCCCCGATCGTCGGAAC
* *
18613058 CCTAATGCCGCCGGTCAGGTTCTCCGACGATG
581 CCCAATGCCGTCGGTCAGGTTCTCCGACGATG
18613090 GTGCCCCGAC
Statistics
Matches: 1320, Mismatches: 147, Indels: 60
0.86 0.10 0.04
Matches are distributed among these distances:
861 3 0.00
862 110 0.08
863 446 0.34
864 56 0.04
865 49 0.04
866 2 0.00
867 2 0.00
869 3 0.00
871 2 0.00
872 1 0.00
875 1 0.00
878 1 0.00
879 1 0.00
880 2 0.00
881 2 0.00
886 1 0.00
889 7 0.01
890 452 0.34
891 126 0.10
892 1 0.00
894 4 0.00
898 8 0.01
899 1 0.00
901 3 0.00
902 36 0.03
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.27
Consensus pattern (860 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACAAAACGAGCGGGCGGGCACTACGC
CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
GTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
GTATTTTTATTGGCATGCTCAAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCGATCGTCGGAACCCCAA
TGCCGTCGGTCAGGTTCTCCGACGATGCTCCAACGATAGTGCCCAGACAAAGAAAAATGAGGCAC
CAGCACATGCCCGAGCCCAGCATGGGCTGCCACAACCCTCGGTCCAGTCCGATCTTTGACTGGAA
ATGAAATCTCTATGCCTAAGTCAACCCACGAAACGACCGTACGGGCGCTCAGTCGGCCAGAGGGG
AGGATGCCCAAGTCGGGGATCGACCGGGTCCCCCTCTGCATGCTACCAATCCTGCACCGCAACCC
TTGATCCGATCCAAT
Found at i:18617722 original size:25 final size:26
Alignment explanation
Indices: 18617666--18617716 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
18617656 TATTTTTCAT
* **
18617666 GATTTTTTAAACTTTTTTCGGTTCGG
1 GATTTTTTAAAATTTTTTCGGTAAGG
18617692 GATTTTTTAAAATTTTTTCGG-AAGG
1 GATTTTTTAAAATTTTTTCGGTAAGG
18617717 AGTTTTGGCC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.22, C:0.08, G:0.20, T:0.51
Consensus pattern (26 bp):
GATTTTTTAAAATTTTTTCGGTAAGG
Found at i:18618159 original size:26 final size:26
Alignment explanation
Indices: 18618130--18618180 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18618120 CCGGTTCGAT
*
18618130 CTTAGACTGGGAATGAATTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
18618156 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
18618181 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:18618563 original size:893 final size:887
Alignment explanation
Indices: 18613119--18623351 Score: 12364
Period size: 900 Copynumber: 11.6 Consensus size: 887
18613109 GGTGGCACCA
* * **
18613119 GCACATCTTCATAATTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
1 GCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
18613184 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTCAAAAG
66 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTTAAAAC
* * * * *
18613249 TTTTTACGGTTTGGGATTTTTTAATATTTTTTCGGAAGGAGTTTTGGCCACAAACTTGGTAGAGG
131 TTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
18613314 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATT
196 TAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
18613379 TTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGT
261 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGT
* * *
18613444 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGAGCCAAT
326 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
18613509 ATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCACACCCCCTGACCCCCCCGATCAC
391 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-GCCCCCCGATCAT
* * * * **
18613574 CGGAACCCCAATGCTGTCGGTTAGGTTCTTTGGCGATGCTCC-AGCGATGGTGCCCCGACGAAGA
455 TGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGA-CGATGGTGCCCCGACGAAGA
* * * * * *
18613638 AAAATGTGGCACCAGTACATGCTCAAGCCCAGCATGTGCTCCCACAA-CC-CTCG--GTC-----
519 AAAATGTGGGACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCTCGTTGTCTTAGA
* * * *
18613694 C-----A-G--TT-TGAT-CGTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAT
584 CTGGGAATGAATTCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * ** * * **
18613749 GAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAAGATGCGCAAGCCGGGGATCGGCTGGGTCC-C
649 GAGCGTGCGGGCGCTCAGCCGGCAAGAGGGGCGGGATGCGCAAGCTGGTGATCGGCCAGGTCCTC
* * * * * * * * *
18613813 CTTTTGTGTGTTG-TCGATCTTGCTGCTGTAACCCTCGGTCCAG-TCTGATCTTAGATTGGGAAT
714 C-TCTGCGTGCTGCT-GATCCTGCTACCGCAACCCTCGGTCCGGTTC-GATCTTAGACTGGGAAT
* * *
18613876 GAACTCTGTATGCTTAAGCCAACCGACGAAACGAGCGGGCGGACGGGTGGGCGGGCACTACGTC-
776 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GG-C----GGGCGGGCACTACGCCG
* * *
18613940 AGCCAGAGACACGGGATGCGCAAGCCGTGGATCAATAGGGTGGCAGGTGGGTTTAG
833 A-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* ** * *
18613996 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATTGCTTCTAAATTCATACAATGGTCCC
1 GCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * ** *
18614061 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACAATTTTCAAAAC
66 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTTAAAAC
* ** * * **
18614126 TTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTTTTAGACG
131 TTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
18614191 TGATCCTTGTATTTTTTTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
196 TAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
18614256 TTGTGACCATTTGAAAAAAGTGTCACCATTT----C-CTTTAATGGCTACTGGCAGCAAACCGGT
261 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGT
* *
18614316 AAAATCTCAAATGCTCTTT-AGGGGAGTGTGAGTTCTCGAGGTTTTATGAGGGATAGAGGGCCAA
326 AAAATCTCAAATGCTCTTTAAGGGG-GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
18614380 TATAAGGGCCAAGTACCAGTACCCATCACACATCATGTGCGCACACCCCCCTGGCCCCCCGATC-
390 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCGATCA
* * * * * * * * *
18614444 GTGGAACCCTATTACCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTGGCAAAGA
454 TTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGA
* * ** *
18614509 AAAATGTGGCACCAGCACATATAG-CCGAGCCTAGCATGTGCTGTCGCAA-CC-CTC--TATC--
519 AAAATGTGGGACCAGCAC--AT-GCCCGAGCCCAGCATGTGCTACCGCAACCCTCTCGTTGTCTT
* * *
18614567 ---C-----A-G--TT-TGAT-CTTAGACTGGGAATGAACTTCGTATGCCTATGTCAACCCACGA
581 AGACTGGGAATGAATTCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * * * * *
18614619 AACGAGCGTGCGGGCACTCAGCCGGCCAGCGGGGCGAGATTCGTAAGCCAGG-GATCGACCGGGT
646 AACGAGCGTGCGGGCGCTCAGCCGGCAAGAGGGGCGGGATGCGCAAG-CTGGTGATCGGCCAGGT
* * * * *
18614683 CCCCCTCTACGTGCTGTTGATCCTGCTACCGCAACCCTCAGTCCGG-TCTGATCTTAGACTAGGA
710 CCTCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCCGGTTC-GATCTTAGACTGGGA
* * *
18614747 ATGAACTCCGTATACCTAAGCCAACCGACGAAATGAGCGGGCGGGTGGGCAAGCGGGCACTACGT
774 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-----GG---GCGGGCACTACGC
*
18614812 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
831 CGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* **
18614869 GCACATCTTCATATTTGTGTTTGCCAATGATATTTTTATGGCTTGTAAATTCATACAATGGTCCC
1 GCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * ** *
18614934 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACAATTTTCAAAAC
66 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTTAAAAC
* ** * * **
18614999 TTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTTTTAGACG
131 TTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
18615064 TGATCCTTGTATTTTTTTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
196 TAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
18615129 TTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGT
261 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGT
18615194 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
326 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
18615259 ATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCACCGGCCCCCCGATAAT
391 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCCGATCAT
* *
18615324 TGGAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATAGTGCCCCGACGAAGAA
455 TGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAA
* * * * * *
18615389 AAATATGGGGACCAGCACATGACCGAGGCCAGCATGTGCTGCTGCAACCCTCGGTCCCATTTGAT
520 AAATGT-GGGACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC--T--C-GTTG-T
* * * ** *
18615454 CTTATATTGGGAATGAACTCCGTATGCTTAGACTACGAATGAACTCCGTATGCCTAAGTCAACCG
578 CTTAGACTGGGAATGAATTCCG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * ** * * * * **
18615519 ATGAATCGAGCGTCCGGGCGGTCAGCCGACCAGAAGGGCAAGATGTGCAAGCCGGGGATCGACTG
642 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCAAGAGGGGCGGGATGCGCAAGCTGGTGATCGGCCA
* ** * * * *
18615584 GGTCCCCCTCTATGTGCTG-TCGATCTTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTG
707 GGTCCTCCTCTGCGTGCTGCT-GATCCTGCTACCGCAACCCTCGGTCCGGTTCGATCTTAGACTG
* *
18615648 GGAATGAACTCCGTATGCTTAAGCCAACCGACGAAACGAGCGGGCGTGCGGGCGGGCACTACGTC
771 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-G-GCGGGCGGGCACTACGCC
* * * * * *
18615713 -AGCTAGAGATG-TGGGATGCGCCAGCCATGGATCAATAGGGTGGCAGGTGGGTTTAG
832 GA-CCAGAGA-GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * *
18615769 GCACATCTTCATATTTCTATGTGCCATTGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCC
1 GCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
18615834 TTAAGCCTTCACGTGAAGTTTCATGGCAAGA-TGACTCGTTTTCTATTTTTCACGATTTTCAAAA
66 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACT-ACTCGTTTTCTATTTTTCATGATTTTTAAAA
** * * *
18615898 CTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGCAGTTTTGGCCCCAAACTTGGTAGAC
130 CTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
18615963 GTGATGCTTGTATTTTTGTTGGCTTGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
195 GTAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
18616028 TTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
260 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTG
*
18616093 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCAA
325 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
18616158 TATAAGGGCCAAGTACCAGCACCCATCGGATATCATGTGCGCACACCCTCCTGTGCCCCCCAATC
390 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCG-GCCCCCCGATC
* * * * * * * *
18616223 ATCGGAACCCCAATGCTGCTGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCTGATGAAG
453 ATTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG
* * * * * * *
18616288 AAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGTTGCTGTAACCCTCGGTCCGGTTAAA
518 AAAAATGTGGGACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC--T-C-GTT--G
* * * * * *
18616353 TCTTAGACTGGGAATGAACTCCATATTCTAAGACTGGGAATGAGCTCCGTATGCCTAAGACAACC
577 TCTTAGACTGGGAATGAATTCC-GATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * ** * * * *
18616418 CATGAATCGAGCGTGCGGGCGCTCAGCCGGCTAGAAGGGCAAGATTCGCAAGCCGGGGATCGGCT
641 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCAAGAGGGGCGGGATGCGCAAGCTGGTGATCGGCC
* * * * * * * * *
18616483 GGGTCCCCCTCTGTGTGCTG-TCGATCTTGCTGCCGCAACCCTTGGTCCAGTCCGATCTTAGACA
706 AGGTCCTCCTCTGCGTGCTGCT-GATCCTGCTACCGCAACCCTCGGTCCGGTTCGATCTTAGACT
* * *
18616547 GGGAATGAACTCCGTATGCTTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGAGCACTACGT
770 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC--G-G-GCACTACGC
* * * * *
18616612 C-AGCCAGAGACACGGGATGCGCAAGCCGTGGATCAATAGAGTGGCAGGTGTGTTTAG
831 CGA-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* ** * *
18616669 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATAGTCCC
1 GCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * * * *
18616734 TTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCATTTTTTATTTTTTACGATTTTCAAAAC
66 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTTAAAAC
** * * *
18616799 TTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGCGTTTTGGCCCCAAACTTGGTAGACG
131 TTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
18616864 TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAACTCAGCCAAAAACTCGAAGTGTACAAGAT
196 TAATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * * *
18616929 TTTGTAACCATTTGAAAAAAGCGTCACCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTG
260 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTG
* * *
18616994 TAAAATCTCAAATGCTCTTTAGGGGGGTGTGAGTTCTCAAGGTTTTATGAGGGATAGGGGGCCAA
325 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
18617059 TATAAGGGCCAAGTGCCACCACCCATCACACATCATGTGCGCACACCCCCTTGGCCCCCCCGATC
390 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGG-CCCCCCGATC
* * * * * * * * *
18617124 -GTGGAAACCTATTACCACCGGTCAGGTTCTCCGACGATGCTCTGACGATGGTGCCCC-AGCAAA
453 ATTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA-CGAA
* * * *
18617187 GAAAAATGTGGCACCAGCACATATAG-TCGAGCCTAGCATTTGCT-CTCGCAA-CC-CTC--TGT
517 GAAAAATGTGGGACCAGCAC--AT-GCCCGAGCCCAGCATGTGCTAC-CGCAACCCTCTCGTTGT
18617246 C-T--A----G--T---TT--GAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
578 CTTAGACTGGGAATGAATTCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * * * * *
18617296 CGAAACGAGCGTACGGACGCTCAGCCGACCACAGTGGCGGGATGTGTAAGC-GGGGATCGACCGG
643 CGAAACGAGCGTGCGGGCGCTCAGCCGGCAAGAGGGGCGGGATGCGCAAGCTGGTGATCGGCCAG
* ** * *
18617360 GTCCCCCTCTGCGTGCTG-TCGATCCTGCTACCGCAACCCTCGGTTTGGTTCAATGTTAGACTGG
708 GTCCTCCTCTGCGTGCTGCT-GATCCTGCTACCGCAACCCTCGGTCCGGTTCGATCTTAGACTGG
* * * *
18617424 GAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAACGGGCAGGCGAACAAGCGGGCACTCC
772 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G-G-----GCGGGCACTAC
*
18617489 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
829 GCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
18617548 GCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCC
1 GCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
18617613 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTTAAAC
66 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTTAAAAC
*
18617678 TTTTT-TCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTAGGTAGAC
131 TTTTTAT-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
*
18617742 GTAATCCTTGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
195 GTAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * **
18617807 TTTGTGACCATTTGAAAAAAGTTTCCCCATTTTAAACACTTTAATAGCTACTGGCAGCAAACCTG
260 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTG
*
18617872 TAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
325 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
18617937 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCGGCCCCCCGATCAT
390 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCAT
* * * * *
18618001 CGAAACCCTAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGATGATGGTGCCCCGACGAAGAA
455 TGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAA
* * *
18618066 AAATGTGGGACCAGCACATGCCCGAGCCCAACATGTGCTTCTGCAACCCTCGGTCCGGTTCGATC
520 AAATGTGGGACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC--T-C-GTT-G-TC
*
18618131 TTAGACTGGGAATGAATTCCGTATACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
579 TTAGACTGGGAATGAATTCCG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* *
18618196 CGAAACGAGCGTGCGGGCGCTCAGCCGGTAAGAGGGGCGGGATGCGCAAGCTAGTGATCGGCCAG
643 CGAAACGAGCGTGCGGGCGCTCAGCCGGCAAGAGGGGCGGGATGCGCAAGCTGGTGATCGGCCAG
* * * * *
18618261 GTCCTCCTCTGTGTGCTGCTGATCCTACTACCGCAACCCTTGGTCCGATTCGATCTTAGACTAGG
708 GTCCTCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGG
* **
18618326 AATGAACTCCGTATGCCTAAACCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTTGACCAG
773 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAG
* * * *
18618391 AGACACGGGATGCGCTAGTCGTGGATCGATAGGATGGTAGGTGGGTTTAG
838 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
18618441 GCACATCTTCATATTTGCGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
1 GCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
18618506 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTTAAAAC
66 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTTAAAAC
*
18618571 TTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
131 TTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
18618636 TAATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCT-AAAACGTCGAAGTGTACAAGAT
196 TAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAAGAT
* *
18618700 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAAACACTTTAACGGCTACTGGCAGCAAACCTG
260 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTG
18618765 TAAAATCTCAAATG-TGCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
325 TAAAATCTCAAATGCT-CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* **
18618829 ATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-ATCCCCCGATCA
389 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCA
** ** *
18618893 TTGGAACCCCAATGCCATCGGTCAGGTTCTTTGGCGATGCTCCGGCGATGGTGCCCCGACGAAGA
454 TTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGA
* *
18618958 AAAATGTGGGACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA-CC-CTCG--G---T---
519 AAAATGTGGGACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCTCGTTGTCTTAGA
*
18619013 CT--G---G--TT-CGAT-CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAC
584 CTGGGAATGAATTCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * *
18619069 GAGCGTGCAGGCGCTCAGCCCGCAAGAGGGGCGGGATGCGCAAGCTAGTGATCGGCCAGGTCCTC
649 GAGCGTGCGGGCGCTCAGCCGGCAAGAGGGGCGGGATGCGCAAGCTGGTGATCGGCCAGGTCCTC
* * * * * *
18619134 CTCTGTGTGCTGCTGATCCTACTACCGCAACCATTGGTCCGGTTTGATCTTAGACTAGGAATGAA
714 CTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAA
* *
18619199 CTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGACCAGAG
779 CTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGCGGGCACTACGCCGACCAGAG
* *
18619264 ACACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
840 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
18619312 GCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCC
1 GCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
**
18619377 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCACAATTTTTAAAAC
66 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTTAAAAC
* *
18619442 TTTTTATGGTTCGGGGTTTTTTAAAATTGTTTT-TGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
131 TTTTTATGGTTCGGGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
18619506 GTAATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGAG
195 GTAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
** *
18619571 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTTGGACACTTGAACGGCTACTGGCAGCAAACCTG
260 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTG
* *
18619636 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGATTTGATGAGGGATAGGGGGCCAA
325 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
18619701 TATAAGGGCCAAGTACCAGCAGCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCAT
390 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCAT
* * * ** *
18619766 TGGAACCCCAATACCGCCGGTCAAGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGATGAAGAA
455 TGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAA
*
18619831 AAATGTGGGACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAA-CC-CTCG--GTC-----C
520 AAATGTGGGACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCTCGTTGTCTTAGAC
18619887 -----A-G--TT-CGAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
585 TGGGAATGAATTCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * *
18619942 AGCGTACGGGTGCTCAACCGACAAGAGGGGCGGGATGTGCAAGCTGGTGATCGGCCAGGTCCTCC
650 AGCGTGCGGGCGCTCAGCCGGCAAGAGGGGCGGGATGCGCAAGCTGGTGATCGGCCAGGTCCTCC
* * * * *
18620007 TCTACGTGCTGCTGATCCTGCTGCCGTAACCCACGGTTCGG-TCTGATCTTAGACTGGGAATGAA
715 TCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCCGGTTC-GATCTTAGACTGGGAATGAA
* *
18620071 CTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGAGCACTACGCCGACCAGAGAGAC
779 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGAC
* *
18620136 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTAAG
844 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
**
18620180 GCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTCTCCC
1 GCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
18620245 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGCTTTCTATTTTTCATAATTTTTAAAAC
66 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTTAAAAC
* * *
18620310 TTTTAATGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
131 TTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
18620375 TAATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACGCAAAGTGTACAAGATT
196 TAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * * *
18620440 TTGTGACCATTTGAAAAAAGTGTCCCAATTGCAGACACTCTAACAGCTACTGGCAACAAACCTGT
261 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGT
* *
18620505 AAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAAT
326 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
18620570 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCATT
391 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCATT
18620635 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA
456 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA
** *
18620700 AATGTGGGACCAGCACATGCCCGAGCCCAAAATGTGCTACCGCAACACTCAGTCCAGTTCGATCT
521 AATGTGGGACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC--T-C-GTT-G-TCT
* * * *
18620765 TAGACTGGGAATAAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCAC
580 TAGACTGGGAATGAATTCCG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* *
18620830 GAAACGAGCGTGCGGGCGCTCAGCCGACAAGAGGGGCGGGATGCGCAAGCTGGTGATCGACCAGG
644 GAAACGAGCGTGCGGGCGCTCAGCCGGCAAGAGGGGCGGGATGCGCAAGCTGGTGATCGGCCAGG
* * * ** * *
18620895 TCCTCCTCTGCATGCAGCTGATCATGCGGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
709 TCCTCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGA
* *
18620960 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCAGGCACTACGCCGACCAGA
774 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAGA
18621025 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
839 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
18621074 GCACATCTTCGTATTTGTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
1 GCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
18621139 TTACGCCTTCACGTCAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCACGATTTTTAAAAC
66 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTTAAAAC
* * *
18621204 TTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACG
131 TTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
18621269 -AGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACACGAT
196 TA-ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
18621333 TTTTTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTA
260 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTG
* * * *
18621398 TAAAATCTCAAATGCTCTTTAGGGGGGTGTGAGTTCTCAAGGTTTTATGAGGGATAAGGGGCCAA
325 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
18621463 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTGGCCCGCCCGATC-
390 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCGATCA
* * * * * * * * *
18621527 GTGGAACTCTATTACTGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCAAAGA
454 TTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGA
* * * * ** * *
18621592 AAAATGCGGCACCAGCACATGTAGCCGAGCCTAGCATGTGCTGTCGCAACCCTCT-GTATGCCTA
519 AAAATGTGGGACCAGCACATG--CCCGAGCCCAGCATGTGCTACCGCAACCCTCTCGT-TGTCTT
* ***** * * * *
18621656 AGTCAACCCACGAA--ACGA-GCGT-G--TGGG--TG--CT-C--A-GCC---G----GCCA-G-
581 AGACTGGGAATGAATTCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * * ** * *** * *
18621698 -AGGAGCG-G-GATGC-ATAAGCC-G-AGGATCGATCGGG-T-CCCCCTCTACGTG--CTGCCA-
646 AACGAGCGTGCG-GGCGCTCAGCCGGCAAGA-GGGGCGGGATGCGCAAGCT-GGTGATCGGCCAG
* * * ** * * * * ** ** * **
18621752 ATCTTCCTACCGC-AAC-CCTCAGTCCAGTCTGATCTTAGA--CT-GG---GAAT-GAACTCCGT
708 GTCCTCCT-CTGCGTGCTGCTGA-TCCTG-CT-ACCGCA-ACCCTCGGTCCGGTTCGATCTTAG-
** * * ** * * ** * * *** *
18621808 A-TGCCTAA-GCTAACTGACGAAATG----AGCGGACGGGCG-GGCAAGCAGGCACTAC-GCCAG
767 ACTG-GGAATG--AACT-CCG-TATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGGCGGGCA-
** * *
18621865 CTA-GAGAGACGAGA---------TGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
825 CTACG-CCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
18621919 GCACATCTTCATATTTTTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
1 GCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
18621984 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCATGATTTTTGAAAC
66 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTTAAAAC
* *
18622049 TTTTT-TCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAGCTTGATAGAC
131 TTTTTAT-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
***** *
18622113 GTAATCCTTGTATTTTTGTTGGCATTTTTTTTAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
195 GTAATCCTTGTATTTTTGTTGGCA--TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
18622178 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACC
258 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACC
*
18622243 TGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
323 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
18622307 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATC
388 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATC
* *
18622372 ATTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
453 ATTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG
** ** *
18622437 AAAAATGTGACACCAGCACATGTTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTCGA
518 AAAAATGTGGGACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC--T-C-GTT-G-
* *
18622502 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAACC
577 TCTTAGACTGGGAATGAATTCCG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
18622567 CACGAAACGAGTCGTGCGGGCGCTCAGCCGGCAAGAGGGGCGGGATGCGCAAGCTGGTGATCGGC
641 CACGAAACGAG-CGTGCGGGCGCTCAGCCGGCAAGAGGGGCGGGATGCGCAAGCTGGTGATCGGC
** * * * * * **
18622632 TGGGTCCTTCTCTGTGTGATGCTGATCCTGCTACCGTAATCCTCAATCCGG-TCTGATCTTAGAC
705 CAGGTCCTCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCCGGTTC-GATCTTAGAC
* * *
18622696 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGTGCGGGCACTACGCCAA
769 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGA
* *
18622761 CCAGAGAGAC-GGATGCGCAAGCCGTGGATCGATAGGGTGGTGGGTAGGTTTAG
834 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
18622814 GCACATCTTCATATTTGTGTGTGCCAATGCCATATTTATGGCTTGTAAATTTATACAATGGTCCC
1 GCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
18622879 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTCAAAAC
66 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTTAAAAC
*
18622944 TTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACG
131 TTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
18623009 TAATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATT
196 TAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
18623074 TTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTAT
261 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGT
* * *
18623139 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATATGAGGCCAAT
326 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
18623204 ATAAGGGCTAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCATC
391 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCATT
* ** * *
18623269 GGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCCACAAAGAAA
456 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA
*
18623334 AAGGTGGGACCAGCACAT
521 AATGTGGGACCAGCACAT
18623352 CTTGATATTT
Statistics
Matches: 8232, Mismatches: 859, Indels: 513
0.86 0.09 0.05
Matches are distributed among these distances:
844 28 0.00
845 247 0.03
846 169 0.02
847 116 0.01
848 1 0.00
849 3 0.00
850 9 0.00
852 2 0.00
853 11 0.00
854 29 0.00
855 5 0.00
856 4 0.00
857 9 0.00
858 15 0.00
859 12 0.00
860 6 0.00
861 9 0.00
862 6 0.00
863 6 0.00
864 4 0.00
865 9 0.00
867 203 0.02
868 602 0.07
869 4 0.00
870 9 0.00
871 557 0.07
872 464 0.06
873 561 0.07
874 28 0.00
875 126 0.02
876 148 0.02
877 286 0.03
878 369 0.04
879 338 0.04
880 22 0.00
881 11 0.00
882 11 0.00
883 21 0.00
884 9 0.00
885 8 0.00
886 7 0.00
887 29 0.00
888 16 0.00
889 2 0.00
890 8 0.00
891 7 0.00
892 12 0.00
893 702 0.09
894 931 0.11
895 249 0.03
896 33 0.00
897 2 0.00
898 6 0.00
899 10 0.00
900 1144 0.14
901 389 0.05
902 22 0.00
903 9 0.00
904 172 0.02
905 1 0.00
906 1 0.00
907 1 0.00
908 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
GCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTTAAAAC
TTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCATT
GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA
AATGTGGGACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCTCGTTGTCTTAGACT
GGGAATGAATTCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
GCGTGCGGGCGCTCAGCCGGCAAGAGGGGCGGGATGCGCAAGCTGGTGATCGGCCAGGTCCTCCT
CTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACT
CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGG
GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
Found at i:18620799 original size:26 final size:26
Alignment explanation
Indices: 18620763--18620815 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18620753 CCAGTTCGAT
*
18620763 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
18620789 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18620815 C
1 C
18620816 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18622532 original size:26 final size:26
Alignment explanation
Indices: 18622503--18622555 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18622493 CCGGTTCGAT
18622503 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18622529 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18622555 C
1 C
18622556 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18623967 original size:26 final size:26
Alignment explanation
Indices: 18623931--18623983 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18623921 CTAGTTCAAT
*
18623931 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
18623957 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
18623983 C
1 C
18623984 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:18624872 original size:26 final size:26
Alignment explanation
Indices: 18624836--18624888 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18624826 CGGGTCCGAT
*
18624836 CTTAGGCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18624862 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18624888 C
1 C
18624889 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18625766 original size:25 final size:26
Alignment explanation
Indices: 18625732--18625783 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18625722 CCGGTCCGAT
18625732 CTTAGACT-GGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18625757 CTTAGACTGGGAATTACCTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18625783 C
1 C
18625784 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18626468 original size:899 final size:899
Alignment explanation
Indices: 18623346--18632017 Score: 11085
Period size: 897 Copynumber: 9.7 Consensus size: 899
18623336 GGTGGGACCA
* *
18623346 GCACATCTTGATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
1 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
18623411 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTTTATTTTTCATGATTTTTAAAAC
66 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAAC
* ** * ** *
18623476 CTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACAAGGTATACG
131 TTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
18623541 TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAAGTCGAAGTGTA-AAGGAT
196 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA-GAT
*
18623605 TTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
260 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
18623670 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
325 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
18623735 TATAAGGGCCCAA-TACCAGCACCCACCGCACATCATGTGTGCACACCCCCCCGACCCCCCCGAT
390 TATAAGGG-CCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGAT
* * * * * *
18623799 CATCGGAACCCCAACGCTGCCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGACAAA
453 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAA
* * ** *
18623864 GAAAAATGTGGCACCAGCACATG-CTCGAGCCCAGCATGTGCTGCTGCAA-CCTTCGGTCTAGTT
518 GAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTT-GGTCCGGTC
* *
18623927 CAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTACGTATGCCTAAGTCA
581 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
18623992 ACCCATGAAGCGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCG
646 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * *
18624057 ACCGGGTCCCCCTATGCATGCTACCGATCCTGCTA-CCGCAACCCTCGGTCCGGTTCGATCTTAG
711 ACCGGGTCCCCCTCTACGTGCTACTGATCCTGC-AGCCGCAACCCTCGGTCCGGTCCGATCTTAG
* * * * * *
18624121 ACTGGGAATGAACTCCTTATGCCTAAGCCAACCGATGAAACGAACGGGTAGGCGGGCAAGTGGGA
775 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A-GCG--GGCGGGCAGGCGGGC
* * * * *
18624186 ACCATGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAG
836 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
18624250 GCACATCTTCATATTTCTACATGCCAATGCCGTTCTTATGACTTGTAAATTCATACAATGGTCCC
1 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
18624315 TTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAAC
66 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAAC
* ** * * *
18624380 TTTTTACTGTTCAGGATTTTTTAAAAATATTTTCGGAATGATTTTTGGCCCCAAACTTGGTAGAC
131 TTTTTACGGTTTGGGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * * * *
18624445 ATCATCCTTGTATTTTTTTTGGAATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGCACAAGAT
195 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
18624510 TTTGTGACCATTTGAAAAAAGTGTCCCGATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTG
260 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* ** *
18624575 TAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGTTATAGGGGGTCAA
325 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
18624640 TATAAGGGCCAAGTACCAGCACCCATTGCACATTATGTGCGCACACCCCCCCGGTCCCCCCGATC
390 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATC
* * * * * * *
18624705 ATCGGAACCCCAATGCCGCCGGTCAAGTTCTCTGGCGATGCTCCGATGATGGTGCCCTGGCGAAG
454 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAG
* * * * *
18624770 AAAAATGCGGCACCAGCACATGCCTGAGCCTAGCATGTGCTGCCGTAACCCTCGATCGGGTCCGA
519 AAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGA
* *
18624835 TCTTAGGCTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
584 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * *
18624900 CACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGCGGGGCGGGATGCGCAAGCCGGGGATCGGCC
649 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACC
* * * ** * * * *
18624965 AGGTCCTCCTCTACATGCTGTTGATCCTGCTGCCGTAACCCTCAGTCCGGTCTGATCTTAGACTG
714 GGGTCCCCCTCTACGTGCTACTGATCCTGCAGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * *
18625030 GCAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG-A--CGGGCATTA-GAC
779 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGGCACTACGTC
* *
18625090 TGGCCAGGGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAG
844 -GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * *
18625147 GCACATCTTCATATTT-TTCTGTGCCAATGCCGTTTTTATGGCTTGTAAATTCAAACAATGGTCC
1 GCACATCTTCATATTTCTAC-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * * *
18625211 CTTGAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATATTTCACGATTTTCAAAA
65 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA
* * * * *
18625276 ATTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCCAAACCTGGTAGAC
130 CTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
18625341 GTGATCCTTGTATTTTTTTTGGCATGCACAACAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
195 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
18625406 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTACTAGTAGCAAACCTG
260 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
** *
18625471 TAAAATCGAAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
325 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* ** * * * *
18625536 GATAAGCACCAAATACCAGCACCCTTCGCACATCATGTGCGTACAACCCCCCGACCCCCCCGATC
390 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCGGCCCCCCCGATC
* * * * *
18625601 GTCGGAACCTCAATGCCGCCGATCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCCCCGACAAAG
454 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAG
* * * * *
18625666 AAAAAGGCGGCACTAGCACATGCCTGAGTCTAGCATGTGCAGCCGCAACCCTTGGTCCGGTCCGA
519 AAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGA
* * * *
18625731 TCTTAGACT-GGAATGAACTCCATATGCTTAGACTGGGAATTACCTCCATATGCCTAAGTCAACC
584 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * **
18625795 CACGGAATGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCTCAAGCCAGGGATCGGTC
649 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACC
* * * * * * *
18625860 GGGTCCCCCTCTGCGTGCTACTGATCTTGCAGCTGCAACCCTTGGTTCGATCCGATCTTACACTG
714 GGGTCCCCCTCTACGTGCTACTGATCCTGCAGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
*
18625925 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCAGGCACTACGTC
779 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGGCACTACGTC
* * *
18625990 GGCCAGAGAGATGGGATGCGCAAGCGGTGGATCGGTAGGGTGGTAGGTGGGTTTAG
844 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
18626046 GCACATCTTCATATTTTTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
1 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * ** *
18626111 TTAAGCCTTCACATGAAGTTTCATGGCAAGACGACGCGTTTTCTATTTTTCATAATTTTCCAAAA
66 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT-TAAAA
* * * *
18626176 CTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTATAC
130 CTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
18626241 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAACTGTACAAGAT
195 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
18626306 TTTATGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTG
260 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
18626371 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-GAGGCTTGATGAAGGATAGGGGGCCAA
325 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
18626435 TTTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCCCGGGCCCCCCTG
390 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-A--CCCCCC-GGCCCCCCCG
* * * **
18626500 ATCG-CTGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATACTCCGACGATGGTGCCCCGAC
451 ATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGAC
* * * * * * *
18626564 GAAGAAAAATGCGGCACCAGCACATGCGTGAGCCCAGCATGAGCTGCGGCAACCATCGGTCTGAT
515 GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGT
* * *
18626629 CCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTC
580 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
18626694 AACCCACGAAACGAGCTTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGACGCGCAAGCCGGGGATC
645 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * *
18626759 GACCGGGTCCCCCTCCACGTGCT-GTCGATCCTGCTGCTGCAACCCTCGGTTCGGTGCGATCTTA
710 GACCGGGTCCCCCTCTACGTGCTACT-GATCCTGCAGCCGCAACCCTCGGTCCGGTCCGATCTTA
* * *
18626823 GACTGAGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAAGCGGGCACT
774 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGGCACT
* * * * * *
18626888 ACGCCGGCCAGAGAGACGAGATGCTCAAGCGGTGGATCGATAGGGTGGCAGGTGGGTTTAC
839 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * * **
18626949 GCACACCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCAT
1 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * *
18627014 TTAAGCCTTCACGTGAAGTTTCATGGCGAGACGACGCATTTTCTATTTTTCACGATTTGTGAAAC
66 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAAC
* * * * *
18627079 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGCGTTTTGGCCCCAAACTTGGTATACG
131 TTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
18627144 TGATCTTTGTATTTTTGTTGGCATGCA-GAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
196 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
18627208 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAAGGGCTACTGGCAGCAAACCTGT
261 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
18627273 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
326 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
18627338 ATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCTGTCCCCCCCGATCGT
391 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
* * * * * * *
18627403 CGGAACCCTAATGCCGTCGGTCAGGTTCTTCGACGATGCTCAGGCGATGGTACCCCGACAAAGAA
456 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAA
* * *
18627468 AAATGCGGCACCAACACATGCATGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCAGTCCGATC
521 AAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATC
* *
18627533 TTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATAAACT-CGTATGCCTAAGTCAACCCA
586 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * * *
18627597 CGAAACGAGCGTGCGGGTGCTTAGTCAGCCAGAAGGGCGGGATGCGTAAGTCGAGGATCGATCGG
651 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGG
** * * * * *
18627662 GTCCCCCTCTGTGTGCTACTGATTC-GACTA-TCACAACCCTCGATCCGGTCTGATCTTAGACTG
716 GTCCCCCTCTACGTGCTACTGATCCTG-C-AGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * *
18627725 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCATTACGTC
779 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGGCACTACGTC
* * * *
18627790 AGCCAGAGAGATGGGATGCACAAGCCGTGGATCGACAGGGTGGTAGGTGGGTTTAG
844 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
18627846 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
1 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
18627911 TTAAGCCTTCACATGAAGTTTCATGGCAACACGACTTGTTTTCTATTTTTCACGATTTTCAAAAC
66 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAAC
* * * * **
18627976 TTTTTTCAGTTTGGGATTTTTCAAGATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGA-G
131 TTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
18628040 ATGATCCTTCTATTTTTGTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGATGTGTACAAGA
196 -TGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
18628105 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCT
259 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
18628170 GTAAAATCTCAAATGCTTTTTAA-GGGG-GTGAGTTCTAGAGGTTTGATGAGGGATAGAGGGCCA
324 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
18628233 ATATAAGGGCCAAGTGCCAGCACCCATCGCACATCAAGTGCGAACAACCCCCCCGG-CCTCCCGA
389 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-A-CCCCCCGGCCCCCCCGA
* * * *
18628297 TCGCCGAAACCCCAATGTCGCCGGTCAAGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACGA
452 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACGA
* * * ** *
18628362 AGAAAAATACGGCACCAGCACATG-CTCGAGCCCAGTATGTGCTGCCACAACCCTCAGTCCGATC
517 AGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTC
* * *
18628426 CGATCTTAGACTTGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCGTATGCCTCAGTCA
581 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * *
18628491 ACCCACGAAACGAGCTTGCCGGCGCTCAGCCGACCAAAGGGGC--G--G-G--AGTCGGGGATCA
646 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * * * ** *
18628549 ATCGGGTCCCCCTCCATGTGCT-GTCGATCTTGCTGCAGCAACCCCTCAATCCGGTTCGATCTTA
711 ACCGGGTCCCCCTCTACGTGCTACT-GATCCTGCAGCCGCAA-CCCTCGGTCCGGTCCGATCTTA
* * * * *
18628613 GACTAGGAATGAACTGCGTATGCCTAACCCAACTGACGAAACGA----GCGGGCAGGCGGGCACC
774 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGGCACT
*
18628674 ACGTCGGCCAGAGAGACGGGATGCGCAAGCGGTGGATCGATAGGGTGGTAGGTGGGTTTAG
839 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* ** *
18628735 GCACATCTTCATATTTTTATGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCC
1 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
18628800 CTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAAC
66 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAAC
*
18628865 TTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
131 TTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * * *
18628930 TGATTCTTATATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGTTT
196 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
18628994 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACATTTTAATTGCTACTGGCAGCAAACCTGT
261 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
18629059 AAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
326 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
18629124 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCTGGCCCCCCCGATCG
391 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGGCCCCCCCGATCG
* * * ** * * *
18629189 TCGGAACGCCAATGACGTCGGTCAGGTTCTCC-AGCGATGCTCCGACGATGGTGCCTCGGCAAAG
455 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGGTGATGGTGCCCCGACGAAG
*
18629253 AAAAATGCGGCACCAGCACATG-CTCGAGCCCAGCATGTGCTGCCGTAACCC-T--T-C-G---G
519 AAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCG
*
18629309 ----T---CT-GG--T----T-C-AAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
583 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * **
18629357 CCACAAAATGAGCCTACGGGAGCTCAGCCGGCCACA--GG-GGGATGCGCAACCCGGGGATCGGT
648 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAC
* * * * * * * * ** *
18629419 TGGGTCCCCCTTTGCGTGCTGCCGATCTTGCTGCCTCAACCCTCTATCCGGTCTGATCTTAGACT
713 CGGGTCCCCCTCTACGTGCTACTGATCCTGCAGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
* * **
18629484 GGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACAC
778 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGGCACTACGT
* *
18629549 CGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGCTAGGGTGGTAGGTGGGTTTAG
843 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
18629606 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGTCTTTTAAATTCATGCAATGGTCCC
1 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
18629671 TTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTTCACTATTTTCAAAAC
66 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAAC
* * *
18629736 TTTCTGA-AGTTTGGGATTTTTTAAAATCTTTTT-GGAAGGATTTTTGGCCCCAAACTTGGTAGA
131 TTT-TTACGGTTTGGGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
18629799 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGA
194 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
18629864 TTTTGTGACCATTTGAAGAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCT
259 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * *
18629929 ATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAAGTTTGATGAGGGATAGGGGGACA
324 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
18629994 ATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACA-CCCCC-GACCCCCCGATC
389 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
* * * * * *
18630057 GTCGGAACCTCAATGCCGTCGATCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCTGATGAAG
454 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAG
* *
18630122 AAAAATGCGGCACCCA-CACATGCCCGAGCCCAGCATCTGCTGCCGCAACCCTCGGTCAGGTTCG
519 AAAAATGCGGCA-CCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCT---T---G---G
* *
18630186 ATCGTAGACTGGGAATGAACTCCGTATGTTTAGACTGGGAATGAACTCCGTATGTTTAGACTGGG
574 -TC-----C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * ** * *
18630251 AATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGATGCCCAGTCGGCCAGAGGG
622 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* ** ** * * *
18630316 GCGGGATACGCAAGCCGGGGATCGAAAGGGTAACCCTTTACGTGCTACCGATCCTGCTA-CCGTA
687 GCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTACTGATCCTGC-AGCCGCA
* * * * *
18630380 ACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGCATGCCTAAGCCAACCGATGAAAC
751 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * *
18630445 GAGCGGGCGGACGGACGGGTGGGCACTACGTCGGCCAGAGAGACGAGATGGGTAAGCCGTGGATC
816 GAGCGGGC-G--GG-CAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
18630510 GATAGGGTGGTAGGTGGGTTTAG
877 GATAGGGTGGTAGGTGGGTTTAG
*
18630533 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
1 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
18630598 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAAC
66 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAAC
* * ***
18630663 TTTTTACGGTTTGGTATTTTTTAAAAATTTTTCGGAAGGAGTTTTCAACCCAAACTTGGTAGACG
131 TTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
18630728 TGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATT
196 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
18630792 TTGTGACCATTTGAAAAAAGTGTCCCGATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGG
261 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
***
18630857 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGAAAAAT
326 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
18630922 ATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCCCCGATC-A
391 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
* * * * *
18630986 CTAGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATACTCCGGAGATGGTGCCCTGACGAAGA
456 C-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGA
* * * * * *
18631051 AAAATGCGACACCAGCACATG-TTCGAGCCCAGCACGTGCTACCGCAACCCTCGGTCTGGTCCGA
520 AAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGA
* * *
18631115 TCTTAGACTGGGAATGAACTTCGCATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
584 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* ** * * * *
18631180 CACGAAACGAGCGTGAGGGCATTCAGCCGACCAGAAGGGCGGGATGCACAAGCCTGGGATCTG-C
649 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GAC
* * * *
18631244 CAGGTCCCCCT-T---TG----TG-TGCT--A-CCGCAACCCTCGATCTGGTCCGATCTTAGACT
713 CGGGTCCCCCTCTACGTGCTACTGATCCTGCAGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
** *
18631297 ATGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGTGGGCGGGCGGGCGGGCACT
778 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----GGGCGGGCAGGCGGGCACT
* *
18631362 ACGTCAGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
839 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
**
18631423 GCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
1 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * *
18631488 TTAAGCCTTCACGTGTAGTTTCATGGCAAGACGACACGTTTTCAATTTTTCATGATTTTTGAAAC
66 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAAC
* * * *** * * *
18631553 TTTTTGCTGCTCAAGATTTTTTAAAATTTTTTCGAAAGGAATTTTGGCCCCAAACTTGGTAGACA
131 TTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
18631618 TGATCCTTCTATTTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTATAAGATT
196 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * * *
18631683 TTGTGACCATTTGAAAAAAGTATCCCCATTTAAGACACTTTAACGGCTACTGGTAGCAAACCTAT
261 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
18631748 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG-AAAT
326 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* ** * *
18631812 ATAATGGAAAAGTACCAGCACCCAACGCACATCATGTGCGCACACCCCCCGGCCCTCCCGATCGT
391 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
* *
18631877 CGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATG---C--------T---CCGACGAAGAA
456 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAA
* * * ** **
18631928 AAATACGGCTCCAGCACATG-CTCGAGCCCAGCATGTGCTGTCATAACCCTCAGTCCGGT-CGAT
521 AAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGAT
18631991 CTTAGACTGGGAATGAACTCCGTATGC
585 CTTAGACTGGGAATGAACTCCGTATGC
18632018 CTAAGGCAAC
Statistics
Matches: 6809, Mismatches: 824, Indels: 299
0.86 0.10 0.04
Matches are distributed among these distances:
862 2 0.00
863 1 0.00
864 64 0.01
865 3 0.00
866 2 0.00
867 59 0.01
868 39 0.01
869 104 0.02
870 7 0.00
871 266 0.04
872 202 0.03
873 3 0.00
874 2 0.00
875 29 0.00
876 58 0.01
877 1 0.00
879 1 0.00
881 1 0.00
882 1 0.00
885 1 0.00
886 1 0.00
887 119 0.02
888 12 0.00
889 450 0.07
890 429 0.06
891 155 0.02
892 37 0.01
893 64 0.01
894 6 0.00
895 203 0.03
896 397 0.06
897 686 0.10
898 331 0.05
899 408 0.06
900 223 0.03
901 146 0.02
902 398 0.06
903 384 0.06
904 147 0.02
905 581 0.09
906 7 0.00
907 2 0.00
910 3 0.00
911 2 0.00
913 1 0.00
917 1 0.00
918 3 0.00
919 3 0.00
920 61 0.01
922 3 0.00
923 116 0.02
924 1 0.00
926 206 0.03
927 270 0.04
928 107 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAAC
TTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAA
AAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGG
GTCCCCCTCTACGTGCTACTGATCCTGCAGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGGCACTACGTCGG
CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
Found at i:18626663 original size:26 final size:26
Alignment explanation
Indices: 18626634--18626686 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18626624 CTGATCCAAT
*
18626634 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18626660 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18626686 C
1 C
18626687 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18627561 original size:26 final size:25
Alignment explanation
Indices: 18627532--18627583 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
18627522 CCAGTCCGAT
* *
18627532 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACT-CGTATG
18627558 CTTAGACTAGGAATAAACTCGTATG
1 CTTAGACTAGGAATAAACTCGTATG
18627583 C
1 C
18627584 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTAGGAATAAACTCGTATG
Found at i:18628468 original size:26 final size:26
Alignment explanation
Indices: 18628430--18628482 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18628420 CCGATCCGAT
* *
18628430 CTTAGACTTGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18628456 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18628482 C
1 C
18628483 CTCAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18630226 original size:26 final size:26
Alignment explanation
Indices: 18630190--18630265 Score: 143
Period size: 26 Copynumber: 2.9 Consensus size: 26
18630180 GGTTCGATCG
18630190 TAGACTGGGAATGAACTCCGTATGTT
1 TAGACTGGGAATGAACTCCGTATGTT
18630216 TAGACTGGGAATGAACTCCGTATGTT
1 TAGACTGGGAATGAACTCCGTATGTT
*
18630242 TAGACTGGGAATAAACTCCGTATG
1 TAGACTGGGAATGAACTCCGTATG
18630266 CCTAAGTCAA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGTT
Found at i:18631152 original size:26 final size:26
Alignment explanation
Indices: 18631116--18631168 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18631106 CTGGTCCGAT
18631116 CTTAGACTGGGAATGAACTTCGCATG
1 CTTAGACTGGGAATGAACTTCGCATG
*
18631142 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGCATG
18631168 C
1 C
18631169 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGCATG
Found at i:18632733 original size:26 final size:26
Alignment explanation
Indices: 18632697--18632773 Score: 145
Period size: 26 Copynumber: 3.0 Consensus size: 26
18632687 CTGGTCTGAT
*
18632697 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18632723 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18632749 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
18632774 ACCTAAGTCA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18633634 original size:26 final size:26
Alignment explanation
Indices: 18633605--18633657 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18633595 CTGGTCCGAT
*
18633605 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
18633631 CTTAGAATGGGATTGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
18633657 C
1 C
18633658 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:18634520 original size:26 final size:26
Alignment explanation
Indices: 18634483--18634535 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18634473 CTGGTCTGAT
18634483 CTTAGATGGGGAATGAACCCCATATG
1 CTTAGATGGGGAATGAACCCCATATG
* *
18634509 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGA-TGGGGAATGAACCCCATATG
18634535 C
1 C
18634536 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGATGGGGAATGAACCCCATATG
Found at i:18634894 original size:894 final size:882
Alignment explanation
Indices: 18631972--18637178 Score: 6485
Period size: 873 Copynumber: 5.8 Consensus size: 882
18631962 GTGCTGTCAT
* * *
18631972 AACCCTCAGTCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCGACGAAA
1 AACCCTCCGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
*
18632036 CGAGCGGGCAGACGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
66 CGAG-TGG--G-CGGGC--G-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * * * *
18632101 CGATAGGGTGGTAGGTAGGCTTAGGCACATCTTCATATTCCTGCATTCCAATGCCATTTTTATGG
124 CGATAGGGTGGTAGGTGGGTTTAGGCACCTCTTCATATTTCTACATGCCAATGCCATTTTTATGG
*
18632166 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTT
189 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * *
18632231 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTACAATTTTTTCGGAAGGAT
254 TCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAG
** * * * *
18632296 TTTTGGCCCCAAACTCGGCAGACGTGATCCTTATATTTTTTTTGGCATGCACAAAAAAATTCAGC
319 TTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTCTTGTTGGCATGCACAAAAAAATTCAGC
* **
18632361 TAAAAACTCGAAGTGTACAAAACATTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
384 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
18632426 AATGGCTACTGGCAGCAAACCTGTAAAATCTC-AATGCTCTTTAAGAGGGTGTGAGTTCTCGAGG
449 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
18632490 TTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
514 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
*
18632555 ACACCCCACCGGCCCCCCCGATCGTCGG-ACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGGT
579 ACACCCC-CCGG-CCCCCCGATCGTCGGAACCC-AATGCCGCCGGTCAGGTTCTCCGGCGATGGT
* * ** * *
18632619 GTCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCTAGCATGTGCTGCCGCAAACCTC
641 GCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC-AA-C-C
*
18632684 GGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATG
703 ---C---TC-GA---T---CT-GG--T---C-T-G-AT-CTTAGACTGGGAATGAACCCCGTATG
* *
18632749 CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCAAGAAACGAGTGTGCGGGCGCTCAGC
745 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
* * * * *
18632814 CGACCAGAGGGGC-GACATGCGCAAGTTGGGGATCGATCGGGTCCCCCTCTGCATGCTACAGATC
810 CG-CCAGAGGGGCGGA-ATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATC
*
18632878 CTGCTACTGC
873 CTGCTACCGC
* * * *
18632888 AACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAA
1 AACCCTCCGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* ** * * *
18632953 CGAGTGGGCAGGC-GGGCACTACGCTAGCCAAAGAGATGAGATGCGCAAGCCGTGGATCGATAGG
66 CGAGTGGGCGGGCGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * *
18633017 GTGGTAGGTGAGTTTAGGCACCTCTTTATATTTCTACATGCCAATGCCATTTTTATAGCTTGTAA
131 GTGGTAGGTGGGTTTAGGCACCTCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
* *
18633082 ATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGACTCGTTTTGTATTT
196 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* *
18633147 TTCACGATTTTTAAAACTTTTTACGGCTCGAGATTTTTTAAAATTTTTTCGTAAGGAGTTTTGGC
261 TTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
* * * *
18633212 CCTAAACTTATTAGACGTTATCCTTGTATTCTTGTTGGCATGCATAAAAAAATTCAGCTAAAAAC
326 CCCAAACTTAGTAGACGTGATCCTTGTATTCTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
18633277 TCAAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCT
391 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
18633342 ACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
456 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
18633407 AGGGATAGGGGGCCAATAAAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACACCCC
521 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * * * * * *
18633472 CCGGCCCCCCGATCGCCGAAACCCCATGTCGCCAGTCAGGTTTTCCGGTGATGGTGCCTCGGTGA
586 CCGGCCCCCCGATCGTCGGAACCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGCCCCGGCGA
* * * * * *
18633537 AGAAAAATGTGACACCAACACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCC
651 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCT
* * *
18633602 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGATTGAACTCCGTATGCCTAAGTCAA
716 GATCTTAGACTGGGAATGAACCCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* ** * * * * * *
18633667 CCCACGAAATGAGTGTGCGTACGCTTAGTCGACCAGAAGGGCGGGATGCGTAAG-CTGAGGATCG
781 CCCACGAAACGAGTGTGCGGGCGCTCAGCCG-CCAGAGGGGCGGAATGCGCAAGTC-GGGGATCG
* * *
18633731 GTCGGGTCGCCCTCTATGTGCTATCGAT-C--CT---G-
844 GTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCGC
*
18633763 ----CT--GTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
1 AACCCTCCGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
18633822 CGAGAGGGCCGACGGGCGGGAGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
66 CGAG-TGG--G-CGGGC--G-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
*
18633887 CGATAGGGTGGTAGGTGGGTTTAGGCACCTCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
124 CGATAGGGTGGTAGGTGGGTTTAGGCACCTCTTCATATTTCTACATGCCAATGCCATTTTTATGG
* * *
18633952 CTTGTAAATTCATACAATGATCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGATGACTCGTTT
189 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * ** * *
18634017 TCTATTTTTCATGATTTTCAAAAATTTTTGGGGTTCGGGA-TTTTTAAAATTTTTTCAAAAGGCA
254 TCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGG-A
* * * *
18634081 -TTTTGGCCCCAAACTTATTAGACGAGATCATTGTCTTCTTGTTGGCATGCACAAAAAAATTCAG
318 GTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTCTTGTTGGCATGCACAAAAAAATTCAG
* * * *
18634145 CTAAAAACTCGAAGTTTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTTAAACACTT
383 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
18634210 TAATGGCTACTGGCAGCAAACCTGTAAATTTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
448 TAATGGCTACTGGCAGCAAACCTGTAAA-ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
18634275 GGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
512 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
18634340 GTACACCCCCCAGCCCCCTGATTGTCGGAAGCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGT
577 GCACACCCCCCGGCCCCCCGATCGTCGGAA-CCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGT
* * * *
18634405 GCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAACATGTGTTACCGCAACCCTC
641 GCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
*
18634470 GATCTGGTCTGATCTTAGA-TGGGGAATGAACCCCATATGCTTAGACTGGGAATGAACTCCGTAT
706 GATCTGGTCTGATCTTAGACT-GGGAATGAACCCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * *
18634534 GCCTAAGTTAACCCATGAAACGAGTGTGCGGGCGCTCAGCCAGTCAGATGGGCGGAATG-GCAAG
770 GCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCC-GCCAGAGGGGCGGAATGCGCAAG
* * *
18634598 CCGGGGATCGGTCGAGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGC
834 TCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCGC
* *
18634647 AACCCTCCGTCCGATTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
1 AACCCTCCGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
18634712 CGAGCGGGTGGGCGGGTGGGCGGGCAGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCAGT
66 CGA----GTGGGC----GGGC-GG--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
*
18634777 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACCT-TTACATATTTCTACCTGCCAATGCCATTTT
120 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACCTCTT-CATATTTCTACATGCCAATGCCATTTT
*
18634841 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACT
184 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * * *
18634906 CGTTTTCTATTTTTCATGTTTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAACTTTTTTAGAA
249 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAA
* * *
18634971 AGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
314 AGGAGTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTCTTGTTGGCATGCACAAAAAAAT
*
18635036 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGAC
379 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * * *
18635101 ACTTTAATAGCTACTGGAAGCAAACCTGTAAAATCTCAAATGGTCTCTAATGGGGTGTGAGTTCT
444 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
18635166 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACACCATG
509 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
*
18635231 TGCGCACACCCCCCGGCCCCTCCGATCGTCGGAACCTCAATGCCGTCGGTCAGGTTCTCCGGTGA
574 TGCGCACACCCCCCGGCCCC-CCGATCGTCGGAACC-CAATGCCGCCGGTCAGGTTCTCC-----
* * * *
18635296 TGCTCTGACGATGGTACCCCGACGAAGAAAATTGTGGCACCAGCACATGCTCGAGCCCAGCATGT
632 -G----G-CGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGT
* * *
18635361 GCTGCCGCAA----C-A-C---TC-GGTC-----C---G-AT-----CTG-AT-CTTAGACAGGG
691 GCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACCCCGTATGCTTAGACTGGG
* * *
18635400 AATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGAGTGCGGGTGCTCAGCCGGCCAGAGGG
756 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCC-GCCAGAGGG
* * * * *
18635465 GTGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCAATCCTGCTGCCAC
820 GCGGAATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCGC
* * *
18635528 AACCCT-CGATCTGGTCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 AACCCTCCG-TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
18635592 ACGAGTGGGCGGGCAAGCGGGCACTACGTCGACTAGAGAGACGGGATGTGCAAGCCGTGGATCGA
65 ACGAGTGGGCGGGC--G-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
18635657 TAGGATGGTAGGTGTGTTTAGGCACCTCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTT
127 TAGGGTGGTAGGTGGGTTTAGGCACCTCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTT
*
18635722 GTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
192 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * * * * *
18635787 TTTTTTCATGATTTTCAAAACTCTTTGCGGTTTGAGATTTTTTAAAATTTTTTTGGAAGGAGTTT
257 ATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTT
* * * *
18635852 TGGTCCCAAACTTATTAGACATGATCCTTGTATTCTTGTTGGCATGCATAAAAAAATTCAGCTAA
322 TGGCCCCAAACTTAGTAGACGTGATCCTTGTATTCTTGTTGGCATGCACAAAAAAATTCAGCTAA
*
18635917 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCA-TTCGAGACACTTTAA
387 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAA
* * * *
18635981 TTGCTACTGACAGAAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
451 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
*
18636046 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCAC
516 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * **
18636111 ACCTCCGCCGGCCCCTCGATCGCCGGAACCCAATGCCGTTGGTCAGGTTCTCCGATGATGCTCCG
581 ACC-CC-CCGGCCCCCCGATCGTCGGAACCCAATGCCGCCGGTCAGGTTCTCC---G--G---C-
* * * *
18636176 ATGATGGTGCCCCAGCGAAGAAAAATGTGGCACCAGCTA-ATGCCCGAGCCCAGTATGTACTACC
635 --GATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGC-ACATGCCCGAGCCCAGCATGTGCTGCC
* * *
18636240 GTAACCCTC-AGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGA
697 GCAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAACCCCGTATGCTTAGACTGGGAATGA
* * * * *
18636304 ACTCCATATGCCTAAGTCAACCCACGAAACAAGCGAGCGGGCACTCAGCCAGCCAGAGGGGCGCG
761 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCC-GCCAGAGGGGCG-G
* * * * *
18636369 -ATGCGTAAGTCGGGGATCGGTTGGGTCCTCCTCTACGTGCTGCCGATCCTGCTACCGT
824 AATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCGC
* * * * *
18636427 AACCCTCGGTCCGGTCCT-ATCTTACACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAA
1 AACCCTCCGTCCGAT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
18636491 ACGA----GCGGGC-GGGCACTACGTCGGCTAGAGAGATGGGATGCGCAAGCCGTGGATCGATAG
65 ACGAGTGGGCGGGCGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
*
18636551 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTA
130 GGTGGTAGGTGGGTTTAGGCACCTCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTA
* *
18636616 AACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATT
195 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * *
18636681 TTTCACAATTTTTGAAACTTTTTATGGTTC-AGGATTTTTTTAAATTTTTTCGAAAGGAATTTTG
260 TTTCACGATTTTTAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTG
* * * *
18636745 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGCCAAA
324 GCCCCAAACTTAGTAGACGTGATCCTTGTA-TTCTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* * *
18636810 AACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTTCCCATTTTAGACACTTTAATG
388 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
18636875 GCTACTGGCAACAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
453 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
18636940 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
518 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-
* * * * *
18637005 CCCCCCGG-CCCCCTATCGCCAGAACCCCATCGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGC
582 CCCCCCGGCCCCCCGATCGTCGGAACCCAAT-GCCGCCGGTCAGGTTCTCCGGCGA---T---G-
* * * * *
18637069 GATGGCGCCCCAGCGAAGAAAAGTGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTA
639 G-T---GCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
** * *
18637134 A-CCTC-AGTCTGGTCCAATCTTAGACTGAGAATGAACTCCGTATGC
700 ACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAACCCCGTATGC
18637179 CTAAGCCAAC
Statistics
Matches: 3775, Mismatches: 397, Indels: 264
0.85 0.09 0.06
Matches are distributed among these distances:
868 2 0.00
869 59 0.02
870 7 0.00
871 2 0.00
872 4 0.00
873 541 0.14
874 19 0.01
875 9 0.00
876 165 0.04
877 359 0.10
878 190 0.05
879 4 0.00
880 79 0.02
881 111 0.03
882 133 0.04
883 9 0.00
884 1 0.00
886 3 0.00
887 3 0.00
888 6 0.00
889 1 0.00
890 119 0.03
891 322 0.09
892 217 0.06
893 10 0.00
894 312 0.08
895 204 0.05
896 3 0.00
897 4 0.00
898 3 0.00
899 179 0.05
900 5 0.00
901 2 0.00
902 2 0.00
905 2 0.00
906 60 0.02
907 2 0.00
908 84 0.02
909 370 0.10
910 99 0.03
913 4 0.00
914 1 0.00
916 15 0.00
917 49 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (882 bp):
AACCCTCCGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGTGGGCGGGCGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACCTCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
CCCAAACTTAGTAGACGTGATCCTTGTATTCTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCGGCCCCCCGATCGTCGGAACCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGCCCCGGCGA
AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCT
GATCTTAGACTGGGAATGAACCCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGTGTGCGGGCGCTCAGCCGCCAGAGGGGCGGAATGCGCAAGTCGGGGATCGGT
CGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCGC
Found at i:18636300 original size:26 final size:26
Alignment explanation
Indices: 18636262--18636314 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18636252 CTGGTCTGAT
* *
18636262 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18636288 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
18636314 C
1 C
18636315 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18640337 original size:26 final size:26
Alignment explanation
Indices: 18640308--18640360 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18640298 CCAGTCCGAT
* *
18640308 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
18640334 CTTAGAATGGGAATGATCTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
18640360 C
1 C
18640361 CTAAATCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:18641397 original size:904 final size:889
Alignment explanation
Indices: 18639446--18641896 Score: 3310
Period size: 904 Copynumber: 2.7 Consensus size: 889
18639436 CCGGTCTGAT
* * * * *
18639446 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTATGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* *
18639511 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAG-CCGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * *
18639576 TGCTACCGTAACCCTCA-TTCCCGTCTGATCTTAGACTGTGAATGAACTCCGT-GCGCCTAAGCC
130 TTCTGCCGCAACCCTCAGTT-CGGTCTGATCTTAGACTGGGAATGAACTCCGTAG-GCCTAAGCC
* * * * * * ** *
18639639 AACCGACAAAACGAGTGTGCGAGTGGACGGGCGGGCACTACAACGGCCAGAGAGACGGGATGCGT
193 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* **
18639704 AAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC-AAAGTGCCAATG
258 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATG
*
18639768 CCA-TTTTAT-GCCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCA
322 CCATTTTTATGGCC-TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
18639831 ACACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATT
386 AGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* *
18639896 TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTCTTGGCATGCAC
451 TTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCAC
* *
18639961 AAAAAAAGTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTTCAAAAAGTGTCCCCA
516 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTTAAAAAAGTGTCCCCA
*
18640025 TTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTG
581 TTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
18640090 TGAGTTCTCTAGGTTTGATGAGGGATAGAGGGCCAATATAATGGCCAAGGACCAGCACCCATCGC
646 TGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAATGGCCAAGGACCAGCACCCATCGC
*
18640155 ACATCATGTGCGCACACCCCCCGCCCCCCGATCGTCGAAACCCCAATGCTTCCAGTTAAGTTCTC
711 ACATCATGTGCGCACACCCCCCGCCCCCCGATCGTCGAAACCCCAATGCGTCCAGTTAAGTTCTC
* *
18640220 TAGAGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
776 TAGAGATAGTGCCCCAGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
*
18640285 CGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATTAACTCCGTATG
841 CGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
18640334 CTTAGAATGGGAATGATCTCCGTATGCCTAAATCAGCCCACGAAACGAGCGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* ** * * * *
18640399 CGACTGGAGGGGCGGGATGCGTAAGCCGGTGGTCGACCAGATCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGG-GATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * *
18640464 TGT-TGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTAGGCCTAAGCCA
130 T-TCTGCCGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTAGGCCTAAGCCA
* * * *
18640528 ACCGACGAAATGAGCGGGTGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGCA
194 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
18640593 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
18640658 ATTTTTATGGCCTGTAAATTCATACAATGGTCGCTTAAGCATTCACGTGAAGTTTAATGGCAAGA
324 ATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * * * * *
18640723 CGACTCATTTTTTTATTTTTTTCAATTTTTGAAACTTTTTACGGTTTGAGATTTTTGAAAACTTT
389 CGACTC-GTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
*
18640788 TTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-A
453 TTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAA
* * *
18640852 AAAAATTTAGCTAAAAACACGAAGTGTACAAGATTTTGTGATCATTTTAAAAAATGTGTCCCCAT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTTAAAAAA-GTGTCCCCAT
* * *
18640917 TTTAGACACTTTAATCGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGT
582 TTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
18640982 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GAGCCAAGTACTAGCACCCATCGC
647 GAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAATG-GCCAAGGACCAGCACCCATCGC
**
18641046 ACATCATGTGCGCACACCCCCCGGTCCCCCCGATCGTCGGTACCCCAATGCCGTCGATCAGGTTC
711 ACATCATGTGCGCACACCCCCC-G-CCCCCCGATCGTCGAAACCCCAATG-CGTC---CA-G-T-
** * * *
18641111 TCCGGTGATGCTC-CGACGATAGTGCCCC-GACAAAGAAAAATGTGGCACCAGGACATGCCCGAG
767 T-AAGT--T-CTCTAGA-GATAGTGCCCCAG-CAAAGAAAAATGCGGCACCAGCACATGCCCGAG
* *
18641174 CCCAGCATGTGCTGCTGCAACCCTC-AGT-TAGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
826 CCCAGCATGTGCTGCCGCAACCCTCGA-TCCA-GTCCGATCTTAGACTGGGAATGAACTCCGTAT
18641237 G
889 G
* * * *
18641238 CTTAGACTGGGAATGAACTCCATCTGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* *** * * * * * *
18641303 CGGCCAAAGGGGTAAGATGCACGAGCCGAGGATTGACCGGGTCCCCCTCTACGTGCTATTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * * *
18641368 TTCTGTCGCAAGCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTTCATATGACTTAGCCAA
130 TTCTGCCGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTAGGCCTAAGCCAA
* * * * * *
18641433 CTGACGAAACGAACGGGCGGGCGGGCAGGCAGGCACTACGCCAGCCAGAGAGACAGGATGCGCAA
195 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
18641498 GCCGTGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
18641563 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCGTGGCAAGAC
325 TTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** *
18641628 GACTCGTTTTCTATTTTTCACGATTTTCAAAACCTTTTACGGTTCGGGATTTTTTAAAATTTTTT
390 GACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
** * ** * * * **
18641693 TGAAA-GAGTTTTGGCCCCGAGTTTGGTAGCCGAGATCCTTGTATTTTTGTTGGTGTGCACAAAA
455 CAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAA
* * * * *
18641757 AAATTCAGCCAAAAGCTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAATGTCCCCATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTTAAAAAAGTGTCCCCATTTC
* *
18641822 AGACACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
585 AGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
18641887 TTCTCGAGGT
650 TTCTCGAGGT
18641897 CCAAGTACCA
Statistics
Matches: 1359, Mismatches: 173, Indels: 48
0.86 0.11 0.03
Matches are distributed among these distances:
887 3 0.00
888 271 0.20
889 104 0.08
890 121 0.09
891 151 0.11
892 1 0.00
893 23 0.02
894 3 0.00
897 2 0.00
898 1 0.00
899 1 0.00
900 1 0.00
901 2 0.00
902 130 0.10
903 106 0.08
904 438 0.32
905 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (889 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCT
TCTGCCGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTAGGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
AAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTTAAAAAAGTGTCCCCATTTCA
GACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAATGGCCAAGGACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCGCCCCCCGATCGTCGAAACCCCAATGCGTCCAGTTAAGTTCTCTAGAG
ATAGTGCCCCAGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
CCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:18643628 original size:26 final size:26
Alignment explanation
Indices: 18643592--18643644 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18643582 CCGATCCGAT
18643592 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18643618 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18643644 C
1 C
18643645 CTAAGTCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18645231 original size:26 final size:26
Alignment explanation
Indices: 18645202--18645254 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18645192 CCAATCCGAT
*
18645202 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
18645228 CTTATACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
18645254 C
1 C
18645255 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:18646114 original size:26 final size:26
Alignment explanation
Indices: 18646085--18646137 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18646075 CCGGTCTGAT
*
18646085 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18646111 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18646137 C
1 C
18646138 CTACGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18646321 original size:883 final size:887
Alignment explanation
Indices: 18644485--18647749 Score: 4354
Period size: 883 Copynumber: 3.7 Consensus size: 887
18644475 CCCTCATTCC
* *
18644485 GGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAACCCAACCGACGAAACGAGCAGTTGGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCGACGAAACGAGC-G--GAG
* *
18644550 CGGACAGGCGGGCACTATGCCAGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
63 CGG---GGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * *
18644615 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATACCAATGCCATTTTTATGGCCTGTAAATTCA
125 AGGTGGGTTTAGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
18644680 TACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
190 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
18644745 GATTTTTTAAACTTTTTACGGTACGAGATTTTTTAAAA-TTTTTCAGAAGGATTTTTGGCCCCAA
255 GA-TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAA
* *
18644809 AGTTGGTAGACATGATCCTTGTATTTTTTTTTTTGGCATGCACAAAAAAAA-TCAGCTAAAAACT
319 ACTTGGTAGACATGATCCTTGTA---TTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACT
* * * *
18644873 CGAAGTGTACAAGATTTTGTGACCAATCGAAAAAAGTTTCCCCATTTTAGACACTTTAATGGCTA
381 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
18644938 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTCAAGGTTTGATGA
446 CTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
18645003 GGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
511 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * *
18645068 AGGCCCCCCCGATGGCCGAAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGGTGCC-CCGAC
576 CGACCCCCCCGATCGCCGAAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCT-CCGACGAC
* ** *** ** * **
18645132 GAAG-AAAAATACAGCACCAGCACATGGTCGAGCCCAGCATGTGTTGCCGCAACCCTCGGTCCAA
640 GATGCAACGATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * *
18645196 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTATACTGGGAATCAACTCCGTATGCCTAAGT
705 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
** * * * *
18645261 CAACCCACAAAACGAGCGTGCGAGCTCTCTGCCTGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
770 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * **
18645326 CGGTTGGGTCCACCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCT
835 CGGTTGGGTCCCCCTCTGTGTGCTGCCGATCTTGCTGCCACAACCCTCGGTCT
* * * *
18645379 GGTCTTATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGC-G-GC-G
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCGACGAAACGAGCGGAGCGG
* *
18645441 GGCAGGCACTACGCC-GCCATGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGG-AGGTG
66 GGCGGGCACTACGCCAGCCA-GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
18645504 GGTTTCGGCACATCTTCTTATTTCTACTTGCCAGTGCCATTTTTATGGCTTGTAAATTCATACAA
130 GGTTTAGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
18645569 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTCCTTTTTTTCACGATTT
195 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * * * *
18645634 TGAAAATTTTTTCCGATTTGGGAGTTTTTAAAATTTTTTC-GATAGGAGTTTTGGCCCCAAACTT
260 TG-AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA-AGGATTTTTGGCCCCAAACTT
* *
18645698 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAATAAAAAATT-AGCTAAAAACTCGAAGT
323 GGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA-AAAAAATTCAGCTAAAAACTCGAAGT
*
18645762 GTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTAGCA
387 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCA
* * * * *
18645827 ACAAACCTATAAAATCTCAAATTCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGGTGAGGGATA
452 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
18645892 GGAGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACATCATGTGCGCAC-CCCCCCGGCCC
517 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCC
* * * * * * **
18645956 CCCCGATCACCGGAACCCCAATGCCGTCGGTTAGGTTCTCCGACGATGCTCCGATGACGATGCTT
582 CCCCGATCGCCGAAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGACGACGATGCAA
*
18646021 CGATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATC
647 CGATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATC
* *
18646086 TTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTACGTCAACCCA
712 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * ***
18646151 TGAAACGAGCGTGCGGGCGCTCAACAGGCCAGAGGGGCGAGATGCGTAAGTCGGGGATCGGCCAG
777 TGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTTGG
* *
18646216 GTCCCCCTCTGTGT-CTTGTCGATCTTGCTGCCACAACCCTCCGTCT
842 GTCCCCCTCTGTGTGC-TGCCGATCTTGCTGCCACAACCCTCGGTCT
* * * * **
18646262 GATCTGATCTTAGATTGGGAATGAAGTCCGTATGCCTAAGCCAATAGACGAAACGAGCGGGCGAG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCGACGAAACGAGC--G-GAG
* * * * *
18646327 CGGGGGGCGGCCACTACGTCAGTCAGAGGGACGGGATGCGGAAGCCGTGGATCGATAGGGTGGTA
63 C--GGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* **
18646392 GGTGGGTTTAGGCACATCTTCTTATTTCTA-TGTGCCAATGCCATTTTTATTTCTTGTAAATTCA
126 GGTGGGTTTAGGCACATCTTCATATTTCTACT-TGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
18646456 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCTC
190 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
18646521 GATTTTGGAAACTTTTTATGGTTCGAGATTTTTTCAAATTTTTTCGGAAGGTTTTTTGGCCCCAA
255 GATTTT-GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAA
* *
18646586 ACTTGGT----A-G--CCTTGTATTTTTGTTGGCTTGCA-AAAAAAAATTCAGCTAAACACTCGA
319 ACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGA
* *
18646643 AGTGTACAAGATTTTGTGACCACTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTA
384 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTA
18646708 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
449 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * *
18646773 ATGGGGGGCCAATATAAGGACCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTGA
514 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGA
* * * *
18646838 CCCCCCCGATCGCCGAAACCACAATGCCGTCGATCAGGTTCTCTGGCGATGCTCCGACGATGGTG
579 CCCCCCCGATCGCCGAAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGACGACGATG
* * * * * * *
18646903 CCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCTAGCATGTGCTACCGTAACCTTCG
644 ---CAACGATG-----T--GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * *
18646968 GTCTGGT-TCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATG
699 GTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * *
18647032 CCTAAGTCAACCCATGAAACGAGCGTGCAGCCGTTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
763 CCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * *
18647097 CGGGGATTGGTTGGGTCCCCCTCTATGTGCTGCCAATCTTGCTGCCACAACCGTCGGTCT
828 CGGGGATCGGTTGGGTCCCCCTCTGTGTGCTGCCGATCTTGCTGCCACAACCCTCGGTCT
* * * ** *
18647157 GGTCCGATCTTAGACTGGGAATGAATTTCGTATGCCTAACCCAATTGACAAAACGAGCGG-GCGA
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCGACGAAACGAGCGGAGCG-
* * *
18647221 ACAGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGTATCGATAGGGTGGTAG
65 ---GGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
18647286 GTGGGTTTAGACACATCTTCATATTTCTGCTTGCCAATACCATTTTTATGGCTTGTAAATTCATA
127 GTGGGTTTAGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
18647351 CAATGGTCCCTTAAGCCTTCACGTGAACTTTAATGGCAAGACAACTCGTTTTCTATTTTTCACGA
192 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* *
18647416 TTTTTGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCTAAA
257 -TTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAA
* * *
18647480 CTTGGCAGACATGATCCTTGTATTTTTGTTGGCATGCAC-AAAACAATTCAGCTAAAAACTCAAA
320 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGAA
* * *
18647544 GTGCACAAGATTTTGTGACCATTTG-AAAAAGTGTCACCATTTTCAGACACTTTAATGGCTACTG
385 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTA
* *
18647608 GCAGCAAAGCTGTAAAATTTCAAATTG-TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
449 GCAGCAAACCTGTAAAATCTCAAA-TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
18647672 GATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACAGCCCCCC
513 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC
18647737 GACCCCCCCGATC
577 GACCCCCCCGATC
18647750 TTAGACTGGG
Statistics
Matches: 2078, Mismatches: 239, Indels: 101
0.86 0.10 0.04
Matches are distributed among these distances:
881 2 0.00
882 79 0.04
883 453 0.22
884 339 0.16
885 174 0.08
887 2 0.00
888 8 0.00
889 3 0.00
890 1 0.00
891 51 0.02
892 182 0.09
893 234 0.11
894 59 0.03
895 253 0.12
896 1 0.00
897 1 0.00
898 1 0.00
899 12 0.01
900 203 0.10
901 20 0.01
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (887 bp):
GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCGACGAAACGAGCGGAGCGG
GGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGT
AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCC
GATCGCCGAAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGACGACGATGCAACGAT
GTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTTGGGTCC
CCCTCTGTGTGCTGCCGATCTTGCTGCCACAACCCTCGGTCT
Found at i:18647018 original size:26 final size:26
Alignment explanation
Indices: 18646980--18647032 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18646970 CTGGTTCGAT
*
18646980 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
18647006 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
18647032 C
1 C
18647033 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18650115 original size:26 final size:26
Alignment explanation
Indices: 18650086--18650138 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18650076 CTGGTCCGAT
*
18650086 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
18650112 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
18650138 C
1 C
18650139 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18650275 original size:898 final size:899
Alignment explanation
Indices: 18648441--18650843 Score: 3649
Period size: 898 Copynumber: 2.7 Consensus size: 899
18648431 GCCCAGCATG
** *
18648441 TGCTGCCGCAACCCTCGGTCCGACCCGATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * *
18648506 CAAACGAGCAGGCGGGCGGGCGGGTGGGTGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAG
66 CCGACGA--A-ACGAGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
18648571 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTACATGCCAATGCCAT
128 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
18648636 TGTTATGGCTTGTAGATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
193 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
18648701 ACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTTACGGTTCGGGATTTTTTTAAATTTTTT
258 ACTCGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
18648766 CGGAAGGAGTTTTGGCTCCAAACTTGGTAGACGTGATCCTAGTATTTTTGTTGCCATGCACAAAA
322 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
18648831 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTC
387 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
* * *
18648896 AGACATTTTAATGGCTACTGGTAGCAAACCTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
452 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
18648961 TTCTCAAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACGT
517 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
18649026 CATGTGCGCACACCCCAACGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCTG
582 CATGTGCGCACACCCCACCGCCCCCCCAATCGCCGAAACCCCAATGCCGTCGATCAGGTTCTCTG
** * **
18649091 GCGAAGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATTCCCGAGTGCAGC
647 GCGAAGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* * *
18649156 ATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAATTCCGTATGCTTGGAC
712 ATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC
* ** * *
18649221 TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGGGCTTAGCCAGCCAG
777 TAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGCCAG
* *
18649286 AGGGGCAGGATGCGCAAGCCGGGGATCAGTCGGGTCCCCCTCTGCGTGCTGCCAATCC
842 AGGGCCAGGATGCGCAAGCCGGGGATCAGTCGGGTCCCCCTCTACGTGCTGCCAATCC
* * * ** ** *
18649344 TGCTGCTGTAACCATCCATCCGGTCAAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
18649409 CCGACGAAACGAGCGGACGGGCGGGCGGGCACTATGCCGGCCAGAGAGACAGGATGCGTAAGCCG
66 CCGACGAAACGAGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
*
18649474 TGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
18649539 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
18649604 CGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAA
261 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAA
* * * *
18649669 AGGAGTTTTGACCCCAAACTTGGTAGACATGATCGTTGCATTTTT-TTGGCATGCACAAAAAAAT
326 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
18649733 TCAGCTGAAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTTAGAC
391 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
*
18649798 ACTTTAATGGCTACTGGCAGCAAACCTATCAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
456 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
18649863 CGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
521 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
18649928 TGCGCACACCCC-CCGACCCCCCCAATCGCCGAAACCCCAATGCCGTCGATCAGGTTCTCTGGCG
586 TGCGCACACCCCACCG-CCCCCCCAATCGCCGAAACCCCAATGCCGTCGATCAGGTTCTCTGGCG
* * * *
18649992 ATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGTACATGCCTGAGCCCAGCATG
650 AAGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * *
18650057 TGCTGCCGCAACCTTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGG
715 TGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAG
* * *
18650122 GAATGAACTCCATATGCCTAAGTCAACCCATGAAACGGGCGTACGGGCGCTCAGCCGGCCAGAGG
780 GAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGCCAGAGG
* * * * * * *
18650187 GCCGGGATGTGCAAGTCGGGGATCGGTTGGGTCCCCCTCTATGTGCTGCCAATCT
845 GCCAGGATGCGCAAGCCGGGGATCAGTCGGGTCCCCCTCTACGTGCTGCCAATCC
* * *
18650242 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAACCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18650307 CCGACGAAACGAGCGGGCGAGCGGGTGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGTCG
66 CCGACGAAACGAGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * **
18650372 TGTATCGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
18650437 TATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
*
18650502 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAA
261 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAA
**
18650567 AGGAGTTTTGGCCCCAAACTTATTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
326 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
18650632 TCAGCTAAAAACTC-AGAGTGCACAAGATTTTGTGACCATTTGAAAAAA--G-----ATTTTCAG
391 TCAGCTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT-AG
* * *
18650689 ACACTTTAATGGCTACTGGCAGCAAAGCTGTAAAATCTCAAATTG-ACTTTAAGGGGGTGTGAGT
454 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAA-TGCTCTTTAAGGGGGTGTGAGT
*
18650753 TCTCGAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
518 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
18650818 ATGTGCGCACACCCCTCCGTCCCCCC
583 ATGTGCGCACACCCCACCGCCCCCCC
18650844 GATCTTAGAC
Statistics
Matches: 1359, Mismatches: 135, Indels: 22
0.90 0.09 0.01
Matches are distributed among these distances:
892 5 0.00
893 143 0.11
894 5 0.00
897 3 0.00
898 809 0.60
899 134 0.10
900 200 0.15
901 1 0.00
903 59 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCACCGCCCCCCCAATCGCCGAAACCCCAATGCCGTCGATCAGGTTCTCTGGCGA
AGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGG
AATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGCCAGAGGG
CCAGGATGCGCAAGCCGGGGATCAGTCGGGTCCCCCTCTACGTGCTGCCAATCC
Found at i:18651595 original size:26 final size:26
Alignment explanation
Indices: 18651566--18651617 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18651556 CTAGTCCGAT
18651566 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
18651592 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
18651618 TCAAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:18652499 original size:26 final size:26
Alignment explanation
Indices: 18652470--18652522 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18652460 CCGGTCCAAT
*
18652470 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
*
18652496 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
18652522 C
1 C
18652523 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:18653074 original size:893 final size:889
Alignment explanation
Indices: 18650907--18656050 Score: 6319
Period size: 893 Copynumber: 5.8 Consensus size: 889
18650897 GGGTGGGCGG
* *
18650907 GCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTAGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
** * *
18650972 TGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATTTCATTGTTATGACTTGTAAATTCATAC
66 TGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
** * * *
18651037 AACAGTCACTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCATGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * * *
18651102 TTTCAAAAATTTTTACGGTTCATGATTTTTTAATATTTTTTCGGAAGGGGTTTTTGCCCCACACT
196 TTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
*
18651167 TGGTAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATT-AGCTAAAAACTCGAAGT
261 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGT
18651231 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
325 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* ** *
18651296 GCAAACCTGTAAAATCTCAAATGCTCTTTATGATGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
390 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
18651361 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCG--G
455 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGCCA
* * ** * * *
18651424 CCCCCCCGATCGCCGTAACCCTAATGCTACTGGTCAAGTTCTCCGGCGATGCTCCGATTATGGTG
519 CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG-GATGCTCCGATGATGGTG
* * * *
18651489 CCCCGGGGAAGAAAAATGTGGCACCAGCACATACTCGAGCCCAGCATGTGCTACCGTAACCCTCG
583 CCCCGGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCT-CCGCAACCCTCG
* * *
18651554 GTCTAGTCCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGT
647 GTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
18651619 CAAAGTCAACCCACGAAACGAGCGTGCGGGGGCTCAGCCGGCCAATGGGGCGGGATGCACAAGCT
712 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCAGGATGCGCAAGCC
* * * * * * * *
18651684 GGGGATCAGTC-AGGTCCCTCTCTAAGTGCT-ACTGAT-TTGGCTGTCGTAACCCTTAGTC-AGT
777 GGGGAT-GGTCGA-GTCCCCCTCTACGTGCTGTC-GATCTT-GCTGCCGCAACCCTCAGTCTGGT
** * * *
18651745 CCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCTAACCGATGAAACGA
838 CTGATCTTAGACTGGGAATGAACTC-GTATGCCTAAGCCAACCGACGAAATGA
* *
18651798 GCGGGCGGCGAGCAAGCGGGCACTACGCCTGCC-GAAGAGACGGGATACGCAAGCCGTGGATCGA
1 -------GCG-G---GCGGGCACTACGCCGGCCAG-AGAGACGGGATGCGCAAGCCGTGGATCGA
* * * ***
18651862 TAGGGTGCTAGGTGGGATTGGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
54 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTT
*
18651927 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTGCATGGCAAGACGACTCGTTTTCT
119 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
18651992 ATTTTTCACGATTTTCAAAACTTTTTACGATTCAGAATTTTTTAAAA-TTTTTCAGAAGGAGTTT
184 ATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
*
18652056 TGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAAA-TCAGCTA
249 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AAATTCAGCTA
* *
18652120 AAAACTCGAAGTGTAAAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
313 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
18652185 TGGCTACTGGCAGCAAACCTATAAACTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
378 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
18652250 TGATGAGGGATAGGAGGCCAATTTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
443 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
*
18652315 ACCCACCCGCCAACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGTGATGC
508 ACCC-CCCGCC-ACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG-GATGC
* * * * *
18652380 TCCGGTGATGGTGCCCCTGCGATGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCAAGTGCT
570 TCCGATGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCT
* * * * *
18652445 ACCGCAACCCTCCGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAAACTGGGAAT
635 -CCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
*** *
18652510 GAACTCCGTATGCCTAAGTCAACCCGTAAAACGAGCGTGCGGGCGCTCAGTCGGCCAAAGGGGCA
699 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCA
* * * * *
18652575 GGATGCGCAAGTCGAGGATGGATCGAGTCCCCCTCTACATGTTGTCGATCCTGCTGCCGCAACCC
764 GGATGCGCAAGCCGGGGATGG-TCGAGTCCCCCTCTACGTGCTGTCGATCTTGCTGCCGCAACCC
* * *
18652640 TCAGTCTGGTCTGATCTTATACTAGGAATGAACTCGTATACCTAAGCCAACCGACGAAATGA
828 TCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCGTATGCCTAAGCCAACCGACGAAATGA
** * *
18652702 GCGGGCGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCATGGATTGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
18652767 CGGGTTTAGCCATATCTTCATATTTCTATGTGCCAATGCCA-TTTTATGGCTTGTAAATTCATAC
66 TGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
18652831 AATGGTCCCTTAAGCCTACACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* ** *
18652896 TTTCAAAACTTTTTACAGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACT
196 TTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * * * *
18652961 TGGTAGACGTTATCCTTGTATTTTTGCTGGCATGCCCAAAAAAATTCAGCTAAAAACTTGAAGTC
261 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
18653026 TACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGACAG
326 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * **
18653091 CAAACCTATAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTTC-AATTTTGATGAGGGATA
391 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGATA
** * *
18653155 GGGGGCCAATATAAGCACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGAA
455 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCAC
* * * * * *
18653219 ACCCCCGATCGTCAGAACCCCAATGCCGTCGATCAGGTTCTCCAGGGATGCTCC-AGCGATGGTG
520 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GGGATGCTCCGA-TGATGGTG
* * * ** ** ** * * * * * *
18653283 CCCCAGCGAAGAAAAATGCTCGAACCCAATATGTGCTCCTG-CAACCCT-TGGTCTG-----GT-
583 CCCCGGCGAAGAAAAATGC-GGCA-CCAGCACATGCTCGAGCCCAGCATGTGCTCCGCAACCCTC
* * * *
18653340 GGTCCGGTCCGATCTTAGACTGGGAATGAAGTCCGTATGCTTAAACTGGGAATGAACTCTGTATG
646 GGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * *
18653405 CCTGAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGT
711 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCAGGATGCGCAAGC
* * * ** * ** *
18653470 CGAGGATCGGTCGGGTCCCCCTCTATGTGCTACCGATCCTATTGCCACAACCCTCAGTCTGGTCT
776 CGGGGAT-GGTCGAGTCCCCCTCTACGTGCTGTCGATCTTGCTGCCGCAACCCTCAGTCTGGTCT
18653535 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA
840 GATCTTAGACTGGGAATGAACT-CGTATGCCTAAGCCAACCGACGAAATGA
* * * * *
18653586 CCGGGCGGGCACTACGCCGGCCAGAGAGACGAGTTGCGCAAGCCGTGGATCGATATGGTGGCAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
18653651 CGGGTTTAGCCATATCTTCATATTTCTATGTGCCAATGCCA-TTTTATGGCTTGTAAATTCATAC
66 TGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
18653715 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACAAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * * **
18653780 TTTCAAAACTTTTTGCAGTTC-GAGATTTTTTAAAATTTTTTTGCAAGGAGCTTTGAACCCAAAC
196 TTTCAAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * *
18653844 TTGGTAGACGTGATCCTTGTATATTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGC
260 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * * *
18653909 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCCACTAGTA
325 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
18653974 GTAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
390 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
18654039 GGGGGCTAATATAAGGGCCAATTACCAGCACCCATCGCACATCATGTGCGTACACCCTCCCCGGC
455 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCCGCC
* * * *
18654104 A--TCCCCGATCACCGAAACCCCAATGCCGCCGGTCAGGTTCTCC---A-------ACGATGGTG
518 ACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGGATGCTCCGATGATGGTG
* * *
18654157 CACCGGTGAAGAAAAATGCGGCACCAGCACATGC-CTGAGCCCAGCATGTGCTGTCGCAACCCTC
583 CCCCGGCGAAGAAAAATGCGGCACCAGCACATGCTC-GAGCCCAGCATGTGCT-CCGCAACCCTC
* ** * *
18654221 GATCCAGTCCGATCTTTCACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAGCTCCGTATG
646 GGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
*
18654286 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAA-GGGC-GGAATGCGCAA
711 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA-AAGGGGCAGG-ATGCGCAA
* * * * * * * * *
18654349 ACCGGGGATTGGCCGGGTCCTCCTCTGCGTACTGTCAATCTTGCTACCGCAACCCTCAG-CTCGA
774 GCCGGGGA-TGGTCGAGTCCCCCTCTACGTGCTGTCGATCTTGCTGCCGCAACCCTCAGTCT-GG
* *
18654413 TCTGATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCCAACCGACGAAACGA
837 TCTGATCTTAGACTGGGAATGAACT-CGTATGCCTAAGCCAACCGACGAAATGA
*
18654467 GCGGGCGGGCGGGCAGGCATGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
1 --------GCGGGC-GG---GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* ***
18654532 TAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
54 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTT
* * * *
18654597 GTAAAATCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAAACGACTCCTTTTTC
119 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT-CGTTTTC
** * * * * *
18654662 TATTTTTCACGATTTTGGAATCTTTTTGCGGTTTAGGATTTTTTTAAATTTTTTCAGAAGGAGTT
183 TATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* *
18654727 TT-GCCCCAAACGTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTA
248 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
18654791 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
313 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
18654856 TGGCTACTGGCATCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTATGAGTTCTC-ATGGT
378 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGT
* *
18654920 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCACA
442 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* ** * * *
18654985 CACCCCTTCCG--GCCCCCCCGATCGTAGGAACCCCAATGCGGCCGGTTAGGTTCTCTGGTGATG
507 CACCCC--CCGCCACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG-GATG
* * * * ** * *
18655048 CTCCGACGGTGGTGCCTCGGTGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGTATGTGC
569 CTCCGATGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGC
**
18655113 TCTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
634 TC-CGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * * **
18655178 TGAACTCCAG-ATGCCTAACTCAACCCACGAAACGAGCATACAGGCGCTCAGCCGACCAGCGGGG
698 TGAACTCC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGG
* * * * * *
18655242 CGGGATGAGCAAGCCGGGGATCGGTC-AGGTCCCCGTCTATGTGCTG-CTGATCTTGCTACCGTA
762 CAGGATGCGCAAGCCGGGGAT-GGTCGA-GTCCCCCTCTACGTGCTGTC-GATCTTGCTGCCGCA
** ** * * *
18655305 ACTATCAG-CTTGGTCCAATCTTAGACTGGGAATGAGCTCTGTATGCCTATGCCGACCGACGAAA
824 ACCCTCAGTC-TGGTCTGATCTTAGACTGGGAATGAACTC-GTATGCCTAAGCCAACCGACGAAA
18655369 TGA
887 TGA
* *** * *
18655372 GAAGGCGGCGGGCACTATTTCGACCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGT
1 G--CG-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * ** *
18655437 AAGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAAGAGATTTTTATGGCTTGAAAATTCA
63 AGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * *
18655502 TACAATTGTCCCTTAAGCCTTCCCGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAT
128 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
** * ** * *
18655567 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTTGAAGGATTTTTGGCCCGAA
193 GATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * * *
18655632 ACTTGATAGACGTGATCCTTCTATTTTTTTTGGCATGGACAAAAAAATTCAGCTAAAAACTCGAA
258 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
18655697 GTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTTAGACACTTT-ATCGACTACTG
323 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT-GGCTACTG
* *
18655761 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGAG
387 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
*
18655826 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CCCCC-C
452 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGC
** * * * * *
18655889 C-GGCCCCCGATCGTCGGAACCCCAACGCCGCCGGTCAGGTTCTCCGACGATGCTCCAACT-ATA
517 CACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-GGATGCTCCGA-TGATG
* * *
18655952 GTGCCCCGACGAAGAAAAATGCGACATCAGCACATGC-CTGAGCCCAGCATGTGCTGCCGCAACC
580 GTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCTC-GAGCCCAGCATGTGCT-CCGCAACC
* * *
18656016 CTCAGTGCAGTCCGATCTTAGACTGAGAATGAACT
643 CTCGGTCCAGTCCGATCTTAGACTGGGAATGAACT
18656051 ATGTATGCCT
Statistics
Matches: 3680, Mismatches: 468, Indels: 201
0.85 0.11 0.05
Matches are distributed among these distances:
871 1 0.00
872 8 0.00
873 6 0.00
874 27 0.01
875 2 0.00
880 5 0.00
881 205 0.06
882 2 0.00
883 194 0.05
884 488 0.13
885 37 0.01
886 4 0.00
887 1 0.00
889 7 0.00
890 75 0.02
891 8 0.00
892 135 0.04
893 559 0.15
894 340 0.09
895 127 0.03
896 387 0.11
897 5 0.00
898 4 0.00
899 4 0.00
900 8 0.00
901 261 0.07
902 200 0.05
903 1 0.00
904 288 0.08
905 286 0.08
906 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
TTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCACC
CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGGATGCTCCGATGATGGTGCCC
CGGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTCCGCAACCCTCGGTCC
AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCAGGATGCGCAAGCCGGGG
ATGGTCGAGTCCCCCTCTACGTGCTGTCGATCTTGCTGCCGCAACCCTCAGTCTGGTCTGATCTT
AGACTGGGAATGAACTCGTATGCCTAAGCCAACCGACGAAATGA
Found at i:18653387 original size:26 final size:26
Alignment explanation
Indices: 18653346--18653405 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
18653336 TGGTGGTCCG
*
18653346 GTCCG-AT-CTTAGACTGGGAATGAA
1 GTCCGTATGCTTAAACTGGGAATGAA
18653370 GTCCGTATGCTTAAACTGGGAATGAA
1 GTCCGTATGCTTAAACTGGGAATGAA
* *
18653396 CTCTGTATGC
1 GTCCGTATGC
18653406 CTGAGTCAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 24 0.77
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (26 bp):
GTCCGTATGCTTAAACTGGGAATGAA
Found at i:18653843 original size:884 final size:876
Alignment explanation
Indices: 18650908--18655973 Score: 5824
Period size: 884 Copynumber: 5.7 Consensus size: 876
18650898 GGTGGGCGGG
* *
18650908 CGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTAGTAGGT
1 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
** * *
18650973 GGGTTTAGGCACATCTTCATATTTCTATGTGCCAATTTCATTGTTATGACTTGTAAATTCATACA
66 GGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
** * * *
18651038 ACAGTCACTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCATGATT
131 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * *
18651103 TTCAAAAATTTTTACGGTTC-ATGATTTTTTAATATTTTTTCGGAAGGGGTTTTTGCCCCACACT
196 TTCAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTT-TGAAGGAG-TTTTGCCCCAAACT
*
18651167 TGGTAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATT-AGCTAAAAACTCGAAGT
258 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGT
18651231 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
322 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* ** * *
18651296 GCAAACCTGTAAAATCTCAAATGCTCTTTATGATGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
387 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGATGAGGGATA
*
18651361 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCGGCC
452 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
* * ** * * * **
18651426 CCCCCGATCG-CCGTAACCCTAATGCTACTGGTCAAGTTCTCCGGCGATGCTCC-GATTATGGTG
517 CCCCCGATCGTCAG-AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCAG-CGATGGTG
* * * * *
18651489 CCCCGGGGAAGAAAAATGTGGCACCAGCACATACTCGAGCCCAGCATGTGCTACC-GTAACCC-T
580 CCCCAGCGAAGAAAAA--T-G--CC-G---A-AC-C---CACA-TATGTGCT-CCTGCAACCCTT
** *
18651552 CGGTCTAGTCCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
629 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * *
18651617 GTCAAAGTCAACCCACGAAACGAGCGTGCGGGGGCTCAGCCGGCCA-ATGGGGCGGGATGCACAA
694 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA-GGGGCAGGATGCGCAA
* * * * * * * * * * *
18651681 GCTGGGGATCAGTCAGGTCCCTCTCTAAGTGCTACTGAT-TTGGCTGTCGTAACCCTTAGTC-AG
758 GCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCTT-GCTGCCGCAACCCTCAGTCTGG
** * * * *
18651744 TCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCTAACCGATGAAACGAGCGGGC
822 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA-----C
* *
18651804 GGCGAGCAAGCGGGCACTACGCCTGCC-GAAGAGACGGGATACGCAAGCCGTGGATCGATAGGGT
1 --CG-G---GCGGGCACTACGCCGGCCAG-AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * * ***
18651868 GCTAGGTGGGATTGGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
59 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAAT
*
18651933 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTGCATGGCAAGACGACTCGTTTTCTATTTTT
124 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* **
18651998 CACGATTTTCAAAACTTTTTACGATTC-AGAATTTTTTAAAATTTTTCAGAAGGAGTTTTGGCCC
189 CACGATTTTCAAAACTTTTTACGGTTCGAG-ATTTTTTAAAATTTTTTTGAAGGAGTTTT-GCCC
*
18652062 CAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAAA-TCAGCTAAAAACT
252 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AAATTCAGCTAAAAACT
* *
18652126 CGAAGTGTAAAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
316 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
18652191 CTGGCAGCAAACCTATAAACTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
381 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGATGA
* *
18652256 GGGATAGGAGGCCAATTTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCAC
446 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-C
** * * * * *
18652321 CCGCCAACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGTGATGCTCCGGT
509 CC-CCGGCCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCAGC
* * * * *
18652386 GATGGTGCCCCTGCGATGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCAAGTGCTACC-GC
573 GATGGTGCCCCAGCGAAGAAAAAT---G--CC-G-A-A--C-C---CACA-TATGTGCT-CCTGC
* * * *
18652450 AACCC-TCCGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAAACTGGGAATGAAC
622 AACCCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
*** * *
18652514 TCCGTATGCCTAAGTCAACCCGTAAAACGAGCGTGCGGGCGCTCAGTCGGCCAAAGGGGCAGGAT
687 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGAT
* * * * * * *
18652579 GCGCAAGTCGAGGAT-GGATCGAGTCCCCCTCTACATGTTGTCGATCCTGCTGCCGCAACCCTCA
752 GCGCAAGCCGGGGATCGG-TCGGGTCCCCCTCTACGTGCTGCCGATCTTGCTGCCGCAACCCTCA
* * * *
18652643 GTCTGGTCTGATCTTATACTAGGAATGAACT-CGTATACCTAAGCCAACCGACGAAATGAG
816 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAC
** * * *
18652703 CGGGCGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCATGGATTGATAGGGTGGTAGGC
1 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
18652768 GGGTTTAGCCATATCTTCATATTTCTATGTGCCAATGCCA-TTTTATGGCTTGTAAATTCATACA
66 GGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
18652832 ATGGTCCCTTAAGCCTACACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
131 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * *
18652897 TTCAAAACTTTTTACAGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTT
196 TTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTT-GAAGGAGTTTT-GCCCCAAACTT
* * * * *
18652962 GGTAGACGTTATCCTTGTATTTTTGCTGGCATGCCCAAAAAAATTCAGCTAAAAACTTGAAGTCT
259 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
18653027 ACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGACAGC
324 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
18653092 AAACCTATAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTTC-AATTTTGATGAGGGATAG
389 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAAGTTTGATGAGGGATAG
** ***
18653156 GGGGCCAATATAAGCACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAAAC
453 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
* *
18653221 CCCCGATCGTCAGAACCCCAATGCCGTCGATCAGGTTCTCCAGG-GATGCTCCAGCGATGGTGCC
518 CCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCC-GGTGATGCTCCAGCGATGGTGCC
18653285 CCAGCGAAGAAAAATGCTCGAACCCA-ATATGTGCTCCTGCAACCCTTGGTCTGGTGGTCCGGTC
582 CCAGCGAAGAAAAATGC-CGAACCCACATATGTGCTCCTGCAACCC-T--TC----GGTCCGGTC
* * * *
18653349 CGATCTTAGACTGGGAATGAAGTCCGTATGCTTAAACTGGGAATGAACTCTGTATGCCTGAGTCA
639 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * *
18653414 ACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGAGGATCG
704 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
* * * ** *
18653479 GTCGGGTCCCCCTCTATGTGCTACCGATCCTATTGCCACAACCCTCAGTCTGGTCTGATCTTAGA
769 GTCGGGTCCCCCTCTACGTGCTGCCGATCTTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGA
18653544 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAC
834 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAC
* * * * *
18653587 CGGGCGGGCACTACGCCGGCCAGAGAGACGAGTTGCGCAAGCCGTGGATCGATATGGTGGCAGGC
1 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
18653652 GGGTTTAGCCATATCTTCATATTTCTATGTGCCAATGCCA-TTTTATGGCTTGTAAATTCATACA
66 GGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
18653716 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACAATT
131 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * *
18653781 TTCAAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTTGCAAGGAGCTTTGAACCCAAACTT
196 TTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTG-AAGGAGTTTTG-CCCCAAACTT
* * * *
18653846 GGTAGACGTGATCCTTGTATATTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGCGT
259 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * * * *
18653911 ACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCCACTAGTAGT
324 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
18653976 AAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
389 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGATGAGGGATAGG
* * * **
18654041 GGGCTAATATAAGGGCCAATTACCAGCACCCATCGCACATCATGTGCGTACACCCTCCCCGGCAT
454 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCCGGCCC
* * *** * * * * ** **
18654106 CCCCGATC-ACCGAAACCCCAATGCCGCCGGTCAGGTTCTCCAACGATGGTGCACCGGTGAAGAA
518 CCCCGATCGTCAG-AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCAGCGATGGTGCC
** * * * * * *
18654170 AAATGCGGCACCAG-CACATGCCTGAGCCCAGC--ATGTGCT-GTCGCAACCC-TCGATCCAGTC
582 CCA-GC-G-A--AGAAAAATGCC-GAACCCA-CATATGTGCTCCT-GCAACCCTTCGGTCCGGTC
** * *
18654230 CGATCTTTCACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAGCTCCGTATGCCTAAGTCA
639 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
18654295 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAAGGGC-GGAATGCGCAAACCGGGGATT
704 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGG-ATGCGCAAGCCGGGGATC
* * * * * * * *
18654359 GGCCGGGTCCTCCTCTGCGTACTGTCAATCTTGCTACCGCAACCCTCAG-CTCGATCTGATCTTA
768 GGTCGGGTCCCCCTCTACGTGCTGCCGATCTTGCTGCCGCAACCCTCAGTCT-GGTCTGATCTTA
* *
18654423 GACTGGGAATGAGCTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
832 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA-----C
* *
18654473 GGGCGGGCAGGCATGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGT
1 ---CGGGC-GG---GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
*** *
18654538 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAA
59 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAAT
* * *
18654603 TCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAAACGACTCCTTTTTCTATTTT
124 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT-CGTTTTCTATTTT
** * * * * *
18654668 TCACGATTTTGGAATCTTTTTGCGGTT-TAGGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGCC
188 TCACGATTTTCAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTT-TGAAGGAGTTTTGCC
* *
18654732 CCAAACGTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACT
251 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
18654797 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
316 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * *
18654862 CTGGCATCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTATGAGTTCTC-ATGGTTTGATG
381 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-AGTTTGATG
* *
18654926 AGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCACACACCCC
445 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * *
18654991 TTCCGGCCCCCCCGATCGT-AGGAACCCCAATGCGGCCGGTTAGGTTCTCTGGTGATGCTCC-GA
510 -CCCGGCCCCCCCGATCGTCA-GAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCAG-
* * * *
18655054 CGGTGGTGCCTCGGTGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGTATGTGCT-CTCG
572 CGATGGTGCCCCAGCGAAG-AAAA-AT-G--CC-G-A-A--CCC-A---CA-TATGTGCTCCT-G
*
18655118 CAACCC-TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
621 CAACCCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * * * *
18655182 CTCCAG-ATGCCTAACTCAACCCACGAAACGAGCATACAGGCGCTCAGCCGACCAGCGGGGCGGG
686 CTCC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGG
* * * * * * * **
18655246 ATGAGCAAGCCGGGGATCGGTCAGGTCCCCGTCTATGTGCTGCTGATCTTGCTACCGTAACTATC
750 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCTTGCTGCCGCAACCCTC
** * * * * *
18655311 AG-CTTGGTCCAATCTTAGACTGGGAATGAGCTCTGTATGCCTATGCCGACCGACGAAATGAGAA
815 AGTC-TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAT--GAC
* *** * * *
18655375 GGCGGCGGGCACTATTTCGACCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAAG
1 CG-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * ** *
18655440 TGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAAGAGATTTTTATGGCTTGAAAATTCATAC
65 TGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
18655505 AATTGTCCCTTAAGCCTTCCCGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGAT
130 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * * *
18655570 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTTGAAGGATTTTTGGCCCGAAACT
195 TTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTTGAAGGAGTTTT-GCCCCAAACT
* * * *
18655635 TGATAGACGTGATCCTTCTATTTTTTTTGGCATGGACAAAAAAATTCAGCTAAAAACTCGAAGTG
258 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
18655700 TACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTTAGACACTTT-ATCGACTACTGGCA
323 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT-GGCTACTGGCA
*
18655764 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG-AGATTTGATGAGAGAT
387 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAG-TTTGATGAGGGAT
*
18655828 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGG-
451 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
* * ** * * *
18655892 -CCCCCGATCGTCGGAACCCCAACGCCGCCGGTCAGGTTCTCCGACGATGCTCCAACTATAGTGC
516 CCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCAGCGATGGTGC
18655956 CCC-GACGAAGAAAAATGC
581 CCCAG-CGAAGAAAAATGC
18655974 GACATCAGCA
Statistics
Matches: 3604, Mismatches: 455, Indels: 228
0.84 0.11 0.05
Matches are distributed among these distances:
874 2 0.00
875 13 0.00
876 1 0.00
877 1 0.00
879 2 0.00
880 5 0.00
881 208 0.06
883 196 0.05
884 492 0.14
885 57 0.02
886 4 0.00
887 2 0.00
888 4 0.00
889 32 0.01
890 76 0.02
891 9 0.00
892 133 0.04
893 478 0.13
894 356 0.10
895 127 0.04
896 397 0.11
897 2 0.00
898 2 0.00
899 7 0.00
900 13 0.00
901 246 0.07
902 211 0.06
903 3 0.00
904 275 0.08
905 244 0.07
906 4 0.00
907 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (876 bp):
CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
TTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAGGAGTTTTGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
CGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCAGCGATGGTGCCCCAG
CGAAGAAAAATGCCGAACCCACATATGTGCTCCTGCAACCCTTCGGTCCGGTCCGATCTTAGACT
GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC
TCTACGTGCTGCCGATCTTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGCCAACCGACGAAATGAC
Found at i:18656344 original size:12 final size:12
Alignment explanation
Indices: 18656327--18656351 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
18656317 TCCAGAAGGA
18656327 TACAAGATTTTG
1 TACAAGATTTTG
18656339 TACAAGATTTTG
1 TACAAGATTTTG
18656351 T
1 T
18656352 GACCATTTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (12 bp):
TACAAGATTTTG
Found at i:18656699 original size:26 final size:26
Alignment explanation
Indices: 18656670--18656722 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18656660 CTGGTCCAAT
18656670 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* *
18656696 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
18656722 C
1 C
18656723 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:18659244 original size:666 final size:669
Alignment explanation
Indices: 18657960--18659297 Score: 1954
Period size: 666 Copynumber: 2.0 Consensus size: 669
18657950 TCAGACACTT
* *
18657960 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
1 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAGGCTCTTTAAGGGGGTGTGAGTTCTCAAG
* * * *
18658025 ATTTGACGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCAACCCCCATCACACACCATGTGCG
66 ATTTGACGAGGGATAGAGGGCCAATATAAAGGCCAAGTACCAACACCCATCACACACCATGTGCG
* * * *
18658090 TACACCCCCCCGACCCCTCCGATCGCCAAGACCCCAATGCTGCCGGTCAGGTTCTCCGGCGATGC
131 TACACCCCCCCGACCCCCCCGATCGCCAAGACCCCAATACCGCCAGTCAGGTTCTCCGGCGATGC
*
18658155 TCTGACGATGGTGCCCCGACGAAAAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
196 TCTGACGATGGTGCCCCGACGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* *
18658220 GTCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
261 GCCACAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGA
* * *
18658285 CGAAACGAGCGGGTGGGCGGACGGGCACTATGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGTA
326 CAAAACGAGC-----GGCGGACGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGA
*
18658350 TCGATAGGGTGTAGGTGGGTTTACGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGG
386 TCGATAGGGTGTAGGTGGGTTTACGCACATCTTCATATTTCTGTGTCCCAATGCCATTTTTATGG
* * *
18658415 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGATTCGTTT
451 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCGTTT
* * *
18658480 TCTCTTTTTCACGATATTCGAAACTTTTTGTGCTTCGAGATTTTTTAAAGTTTTTTCGAAAGGAG
516 TCTATTTTTCACGATATTCGAAACTTTTTGCGCTTCGAGATTTTTTAAAATTTTTTCGAAAGGAG
*
18658545 TTTTGGCCCCAAACTTGGTAGACGTGCTCCTTGTATTTTTGTTGGCATGCACAAAAA-AA-TCAG
581 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACAATTCAG
*
18658608 CTCAAAACTCGAAGTGTACAAGAC
646 CTAAAAACTCGAAGTGTACAAGAC
* *
18658632 TAATGGCTACTGGCAGCAAACCTGTATAATCTCAAAGGGTCTTTAAGGGGGTGTGAGTTCTCAAG
1 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAGGCTCTTTAAGGGGGTGTGAGTTCTCAAG
* * * * * *
18658697 GTTTGATGAGGGATATAGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
66 ATTTGACGAGGGATAGAGGGCCAATATAAAGGCCAAGTACCAACACCCATCACACACCATGTGCG
* * * * *
18658762 TACACCCCCCCCGGCCCCCCCGATCGTC-GGAACCCTAATACCGCCAGTCAGGTTCTCCGGTGAT
131 TACA-CCCCCCCGACCCCCCCGATCGCCAAG-ACCCCAATACCGCCAGTCAGGTTCTCCGGCGAT
* * * * * *
18658826 GCTCCT-ACGGTGGTGCCTCGAC-AAAGAAAAATGCGGCACCAGCACATGCCTGAGCTCGGCATG
194 GCT-CTGACGATGGTGCCCCGACGAAA-AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
** **
18658889 TGCTGCCGTAACCCTCGGTCCGGTTTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
257 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
* * *
18658954 CCGACAAAACGAGC-G-GG-CGGGCAGTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
322 CCGACAAAACGAGCGGCGGACGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGAT
* *
18659016 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTCCCAATGCCATTTTTATGG
387 CGATAGGGT-GTAGGTGGGTTTACGCACATCTTCATATTTCTGTGTCCCAATGCCATTTTTATGG
* *
18659081 CTTGTAAATTCGTACAATGTTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCGTTT
451 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCGTTT
* * * * *
18659146 TCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAG
516 TCTATTTTTCACGATATTCGAAACTTTTTGCGCTTCGAGATTTTTTAAAATTTTTTCGAAAGGAG
* * * *
18659211 TTTTGGCCCGAAACTTGGTATACTTGATCCTTGTATTTTTGTTGGCATGCGCAAAAACAATTCAG
581 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACAATTCAG
18659276 CTAAAAACTCGAAGTGTACAAG
646 CTAAAAACTCGAAGTGTACAAG
18659298 TTTTTGTGAC
Statistics
Matches: 595, Mismatches: 64, Indels: 18
0.88 0.09 0.03
Matches are distributed among these distances:
665 49 0.08
666 223 0.37
667 3 0.01
668 25 0.04
672 124 0.21
673 169 0.28
674 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (669 bp):
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAGGCTCTTTAAGGGGGTGTGAGTTCTCAAG
ATTTGACGAGGGATAGAGGGCCAATATAAAGGCCAAGTACCAACACCCATCACACACCATGTGCG
TACACCCCCCCGACCCCCCCGATCGCCAAGACCCCAATACCGCCAGTCAGGTTCTCCGGCGATGC
TCTGACGATGGTGCCCCGACGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
GCCACAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGA
CAAAACGAGCGGCGGACGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGAT
AGGGTGTAGGTGGGTTTACGCACATCTTCATATTTCTGTGTCCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCACGATATTCGAAACTTTTTGCGCTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACAATTCAGCTAAA
AACTCGAAGTGTACAAGAC
Found at i:18659652 original size:26 final size:26
Alignment explanation
Indices: 18659616--18659667 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18659606 TGGTTCGATA
* *
18659616 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
18659642 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
18659668 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:18660426 original size:26 final size:26
Alignment explanation
Indices: 18660397--18660446 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
18660387 TGGTCCGATC
18660397 TTAGACTGGGAATGAACTCCGTATTA
1 TTAGACTGGGAATGAACTCCGTATTA
18660423 TTAGACTGGGAATGAACTCCGTAT
1 TTAGACTGGGAATGAACTCCGTAT
18660447 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATTA
Found at i:18660782 original size:158 final size:157
Alignment explanation
Indices: 18660423--18660783 Score: 465
Period size: 157 Copynumber: 2.3 Consensus size: 157
18660413 CTCCGTATTA
18660423 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTAGGGGCGCTCAACC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTAGGGGCGCTCAACC
* * * *
18660488 GACCAGAGGGGTGGGAGCGCAAGCCGGGGATTGGTCGGGTCCCCCTTACGTGCTGCCAATCCTAC
66 GACCAGAGGGGCGAGAGCGCAAGCCGGGGATCGGTCAGGTCCCCCTTACGTGCTGCCAATCCTAC
* * *
18660553 TGCCACAACCCTCCATCCGGTCTGATC
131 TACCACAACCCTCAATCCGGTCCGATC
* * **
18660580 TTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGACCGT-GCGGGCGCTCAGT
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTAG-GGGCGCTCAAC
* * * *
18660644 CGGCTAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTGCGTGCTGCCGATCC
65 CGACCAGAGGGGCGAGA-GCGCAAGCCGGGGATCGGTCAGGTCCCCCT-TACGTGCTGCCAATCC
* * ** *
18660709 TGCTATCGTAACCCTCAATCTGGTCCGATC
128 TACTACCACAACCCTCAATCCGGTCCGATC
* * * *
18660739 TTAGATTGGGAATGAACT-TGTATGCCTAAGCCAACCGACGAAACG
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
18660784 TGCGGGCCCG
Statistics
Matches: 175, Mismatches: 26, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
156 1 0.01
157 71 0.41
158 51 0.29
159 52 0.30
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTAGGGGCGCTCAACC
GACCAGAGGGGCGAGAGCGCAAGCCGGGGATCGGTCAGGTCCCCCTTACGTGCTGCCAATCCTAC
TACCACAACCCTCAATCCGGTCCGATC
Found at i:18661509 original size:26 final size:26
Alignment explanation
Indices: 18661458--18661510 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18661448 CCGGTCCGAT
* *
18661458 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACAGGGAATGAACCCCATATG
**
18661484 CTTAGACAGGGAATGAACTTCATATG
1 CTTAGACAGGGAATGAACCCCATATG
18661510 C
1 C
18661511 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACCCCATATG
Found at i:18664043 original size:26 final size:26
Alignment explanation
Indices: 18664014--18664063 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18664004 TTGGTCCGAT
18664014 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
*
18664040 CTTAGACTGGGACTGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
18664064 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:18664952 original size:26 final size:26
Alignment explanation
Indices: 18664916--18664968 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18664906 TCGGTCCAAT
18664916 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18664942 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18664968 C
1 C
18664969 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18666610 original size:864 final size:864
Alignment explanation
Indices: 18663600--18667317 Score: 3847
Period size: 910 Copynumber: 4.2 Consensus size: 864
18663590 TTTTTTAGAT
* * * *
18663600 GGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTTTATTTTTGTTCGCATGCACAAAAAATTT
1 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
18663665 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACA
66 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAAACA
*
18663730 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
130 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAA-GGGGTGTGAGTTCTC
* * ** *
18663795 AAGGTTTGATGAGGGATAGAAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGT
194 GAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CAGCACCCATCGCACATCATGT
* * * * ** * *
18663860 GCG--CACCGCCC-AGACCCCCAATCGTTGGAACCCCAATGCCGTC-GATTAGGTTCTCC-G-A-
258 GCGCACACCCCCCTGGCCCCCCGATCGCCGGAACCCCAATGCCGCCAG-TCAGGTTCTCCGGTAT
* * * *
18663918 ---CGATGCTCTGACGATGGTGTCCC-AGCAAAGAAAAATGC-GACACCAGCAAATGCCTGAGCC
322 GCTCGATGCTC-GACGATGGTGCCCCGA-CGAAGAAAAATGCAG-CACCAGCACATGCCCGAGCC
* * * * * *
18663978 TAGCATGTGCTGCCGCAACCTTCAGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTACGCTT
384 CAGCATGTGCTGCCGTAACC--CA----CGTCGGATCTTAGTCT-----CGAA-----TA--CTT
* * *
18664043 AGACTGGGACTGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGG
431 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGG
* * * *
18664108 CTAGAGAGGCGAGATGCGCAAGTCGGGGATCG-GCTGGGTCCTCC-TCTGCGTGCTGTCGATCCT
496 CTAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCC-CCTTCTGCGTGCTGTCGATCCT
* * ** * ** *
18664171 CCAGCCATAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAAC
559 GCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * ** *
18664236 CGATGAAATGAGCGGGCAGGCGGGCAAGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAG
624 CGACGAAACGAGC--G-A-GC-GG--A-CGGG-----CG---G-GTGAGAGAC----T--ACAAG
* * * *
18664301 CCTTGGATCGATAGGGTGGTGGGTGGGTTTAGGCACATTTTCATATTTCTGTGTGCCAATGCCAT
666 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGAGTGCCAATGCCAT
* * *
18664366 TTTTATGCCCTGTAACTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
731 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * ** *
18664431 ACTGGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGTGGTTTGAGATTTTTTAAAAATTTTTT
796 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTT-AAAATTTTTT
18664496 -GGAA
860 CGGAA
** * *
18664500 GGTTTTTTGGCCCAAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
1 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
18664565 CAGCTAAAAACTCGAAGTGTGA-AAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTCAGAC
66 CAGCTAAAAACTCGAAGTGT-ACAAGATTTTGTGACCATTTGAAAAA-GTGTCCCCATTTCAAAC
*
18664629 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTTC
129 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTTAAGGGGTGTGAG-TTC
* *
18664694 TTGAGGTTTGA-AGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCAACCATCGCACATCA
192 TCGAGGTTTGATA-AGGGATAGGGGGCCAATATAAGGGCCAAGTAC-AGCACCCATCGCACATCA
*
18664758 TGTGAGCACACCCCCC-GGCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCC---
255 TGTGCGCACACCCCCCTGGCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGT
*
18664819 A-G--CGATGCTCCGGCGATGGTG-CCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCC
320 ATGCTCGATGCT-CGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCC
* *
18664880 CAGCATGTGCTGCCGTAACCCACGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTT
384 CAGCATGTGCTGCCGTAACCCAC-G-TCGG----ATCTT--A----G--T---CT-CGAATACTT
* *
18664945 AGACTGGGAATGAATTCCGTATGCCTAAGTCAACCAACAAAACGAGCGTGCGGGCGCTCAGCCGG
431 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGG
* * *
18665010 CTAGAGGGGCGGGATGCGCAAGCTGGGGATTGATCGGGT-CCCTCTCTGCGTACTGTCGATCCTG
496 CTAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCT-TCTGCGTGCTGTCGATCCTG
* *
18665074 CTGCCACAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
560 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * *
18665139 GACGAAATGAGGGAGCGGGCAGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGGCGTG
625 GACGAAACGAGCGAGCGGACGGGCGGG---T----------GAGAGAC----T--ACAAGCCATG
* * * * *
18665204 AATCGATAGGGTGGTAGGTGGCTTTCGGCTCATCTTCATAATTCTGCA-TGCCAATGCCATTTTT
671 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-AGTGCCAATGCCATTTTT
*
18665268 ATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
735 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
18665333 GTTTTCTAGTTTTCACGATTTTAGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAA
800 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
** * * *
18665398 ACAATTTTGGCCCCACA-TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
1 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * * *
18665462 CAGTTAAAAACTTGAATTGTACAAGATTTTGTGACTATTTGAAAAAGTGTCCCCATTTTAAACAC
66 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAAACAC
** *
18665527 TTTAATACCTACTGGCAGCAAATCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCG
131 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAA-GGGGTGTGAGTTCTCG
* * *
18665592 AGGTTTGATGAGGGATATGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTG
195 AGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CAGCACCCATCGCACATCATGTG
* * * * * *
18665657 CACACGCCCCCCGTTCGGCCCCCCCGATCACCGAAACCCCAATGCCGTCGGTCAGG-T-T-C---
259 CGCACACCCCCC--T-GG-CCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGT
*
18665716 -T-C-CG--G--C-A--ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
320 ATGCTCGATGCTCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCC
*
18665771 AACATGTGCTGCCGTAA-CC-C-TCGG-TC-TAGTCT-G-AT-CTTAGACTGGGAATGAACTCCG
385 AGCATGTGCTGCCGTAACCCACGTCGGATCTTAGTCTCGAATACTTAGACTGGGAATGAACTCCG
* ** * *
18665828 TATGCTTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAATCGGCTAGAGGGGTGGGATGCAC
450 TATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCGC
* * * * * **
18665893 AAGCCGGGGATC-AGCTGGGTCCCCTTCTGCCTGTTGTCGATCCTTCTACCGCAACCCTCGGTTT
515 AAGCCGGGGATCGATC-GGGTCCCCTTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCC
* * ** * *
18665957 GGTCTGATCTTAGACTAGGAATGAAGTAGGTATGCCTAAGCCAACCGACAAAACGAGCAAGCGGA
579 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGA
* * * *
18666022 CGGGCGGGTG-GAGACTACTAGCCATGGATCGATAGGGTGGTAGCTGGGTATAGGCTCATCTTCA
644 CGGGCGGGTGAGAGACTACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
18666086 TATTTTTGAGTACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
709 TATTTCTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * ***
18666151 CGTGAAGTTTAATGGCAAGACGACTCATTTTCTATTTTTTACGATTTTTGAAACTTTTTACAAAT
774 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
* *
18666216 CGAGATTTTTTAAAATTTTTTCAGAG
839 CGAGATTTTTTAAAATTTTTTCGGAA
* *
18666242 GGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATA
1 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
18666307 CAGCTAAAAACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAAACA
66 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA-GTGTCCCCATTTCAAACA
*
18666372 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGTGTGAGTTCTCG
130 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGTGTGAGTTCTCG
18666437 AGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTG
195 AGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CAGCACCCATCGCACATCATGTG
* * *
18666502 CGTACACCCCCCTGGCCCACCCGATCGTCGGATCCCCAATGCCGCCAGTCAGGTTCTCCGGTGAT
259 CGCACACCCCCCTGGCCC-CCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGT-AT
* * *
18666567 GCTCGGGAGATGCTTCGACGATGGTGCCCCGATGAAGAAAAATGCAGCACCGGCACATGCCTGAG
322 GCTC----GATGC-TCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAG
* ** * * *
18666632 CCTAGCATGTGCTGCCACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTTGTGTGC
382 CCCAGCATGTGCTGCCGTAACCCAC-GTC--G---GATCTTAGTCT-CGAAT--AC------T--
* *
18666697 TCAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
430 T-AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCC
** * * * * * * *
18666762 AACCAGAGGGGCGAGATGCGCAAGGCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCT
494 GGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCTTCTGCGTGCTGTCGATCCT
* * * *
18666827 GCTGCTGCAACCCTCGGACCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAAC
559 GCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* ** *
18666892 CGACGAAACGAGCGGGCGGGCGAGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCAT
624 CGACGAAACGAGCGAGC--G-GA-CGGG--------CGG-GTGAGAGAC----T--ACAAGCCAT
**
18666957 GGATCGATAGGGTGGTAGGTCAGTTTAGGCACATCTTCATATTTCT-ACGTGCCAATGCCATTTT
670 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGA-GTGCCAATGCCATTTT
* *
18667021 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGAAAGACGACT
734 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
18667086 CGTTTTCTATTTTTCATGATTGTTGAAACTTTTTACGGTTCGAGATCTTTTAAAATTTTTTCGGA
799 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
18667151 A
864 A
* * * * *
18667152 GGAGTTTTGCCCCCAAAATTGGTTGACGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAACATT
1 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* *
18667217 TAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
66 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAAACA
18667282 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
130 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
18667318 CGGTGATGCT
Statistics
Matches: 2399, Mismatches: 282, Indels: 264
0.81 0.10 0.09
Matches are distributed among these distances:
841 3 0.00
842 30 0.01
843 3 0.00
844 191 0.08
845 173 0.07
846 63 0.03
850 6 0.00
851 2 0.00
852 1 0.00
856 1 0.00
858 1 0.00
861 2 0.00
862 1 0.00
863 2 0.00
864 244 0.10
865 8 0.00
866 2 0.00
868 4 0.00
870 1 0.00
871 1 0.00
873 2 0.00
874 2 0.00
875 5 0.00
877 2 0.00
878 2 0.00
879 1 0.00
880 2 0.00
881 1 0.00
885 4 0.00
886 1 0.00
887 1 0.00
888 1 0.00
889 11 0.00
890 230 0.10
891 1 0.00
892 2 0.00
893 2 0.00
894 7 0.00
895 78 0.03
896 68 0.03
897 101 0.04
898 200 0.08
899 9 0.00
900 206 0.09
901 68 0.03
902 240 0.10
903 63 0.03
904 9 0.00
908 2 0.00
909 3 0.00
910 329 0.14
911 5 0.00
913 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (864 bp):
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAAACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGTGTGAGTTCTCGA
GGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACAGCACCCATCGCACATCATGTGCG
CACACCCCCCTGGCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTATGCTC
GATGCTCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGTAACCCACGTCGGATCTTAGTCTCGAATACTTAGACTGGGAATGAACTCCGTATGCC
TAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCGCAAGCCG
GGGATCGATCGGGTCCCCTTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGA
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGACGGGCGG
GTGAGAGACTACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
GAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATT
TTTTAAAATTTTTTCGGAA
Done.