Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 107 of 117
Found at i:18668139 original size:723 final size:718
Alignment explanation
Indices: 18666699--18668006 Score: 1841
Period size: 723 Copynumber: 1.8 Consensus size: 718
18666689 TTGTGTGCTC
* *
18666699 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAA
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAACCAA
* *
18666764 CCAGAGGGGCGAGATGCGCAAGGCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
66 CCAGAGGGGCGAAATGCGCAAGGCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTAC
*
18666829 TGCTGCAACCCTCGGACCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCG
131 TGCCGCAACCCTCGGACCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCG
* * *
18666894 ACGAAACGAGCGGGCGGGCGAGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGG
196 ACGAAACGAGCAGGCGGGCGAGCGGGCACTACACCAGCCAGAGAGACGGGAAGCGCAAGCCATGG
* *
18666959 ATCGATAGGGTGGTAGGTCAGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
261 ATCGATAGGGTGGTAAGTCAGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
18667024 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGAAAGACGACTCGT
326 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGAAAGACGACTCGT
* *
18667089 TTTCTATTTTTCATGATTGTTGAAACTTTTTACGGTTCGAGATCTTTTAAAATTTTTTCGGAAGG
391 TTTCTATTTTTCACGATTGTTGAAACTTTCTACGGTTCGAGATCTTTTAAAATTTTTTCGGAAGG
** * * *
18667154 AGTTTTGCCCCCAAAATTGGTTGACGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAACATTTA
456 AGTTTTGCCCCCAAAATTGGCAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTA
* * *
18667219 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
521 CCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTGCAGAAACT
* * * * * * *
18667284 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCCGGTGATGCTCTGGCGATGGTGCCCCAGCAA
586 TAAATCGCAAATGGCAGCAAACCTGTAAAATCTCAGGTGATGATCAGGCGATGGTGCCCCA-CAA
* * * ** * **
18667349 AAAAAATACGGCACCACCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCATCGGTCTGGTCCG
650 AAAAAAGACAGCACCACCACATGCCC-AGCACAGCATGTGCTGCCACAACCATCGGGCTCCTCCG
18667414 ATCTT
714 ATCTT
* * * **
18667419 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAACCGAGCGTACGGGCGCTCAACCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAACCAA
* * * * * *
18667484 CTAGAGGGGCGAAATGCGCAAGTCGGGGATCGGTTGGGTCCCCCTCTGCTTGCTGCTGATCCTAC
66 CCAGAGGGGCGAAATGCGCAAGGCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTAC
* ** * * * **
18667549 TGCCG-TACCCTCGGTTCGGTTTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGGCAACCG
131 TGCCGCAACCCTCGGACCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCG
* * ** * *
18667613 ATGAAATGAGCAGGCGGGCGAGCGGGCGGGCACTACACCAGCCAGAGCTACGGGAAGCGCCAGTC
196 ACGAAACGAGCAGGCGGGCGA----GCGGGCACTACACCAGCCAGAGAGACGGGAAGCGCAAGCC
* ** *
18667678 GTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
257 ATGGATCGATAGGGTGGTAAGTCAGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
*
18667743 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAA-ACGA
322 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGG-AAAGACGA
* ** *
18667807 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTCTGTGGTTCG-GAATTTTTTAAAATTTTTTC
386 CTCGTTTTCTATTTTTCACGATTGTTGAAACTTTCTACGGTTCGAG-ATCTTTTAAAATTTTTTC
* * *
18667871 GGAAGGAGTTTTG-GCCCAAACTTGGCAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAA
450 GGAAGGAGTTTTGCCCCCAAAATTGGCAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
18667935 AATTTACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAATAGTGTCCCCATTGGC
515 AATTTACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT-GC
18668000 AGCAAAC
579 AG-AAAC
18668007 CTGTAAAATC
Statistics
Matches: 522, Mismatches: 58, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
719 69 0.13
720 119 0.23
722 104 0.20
723 224 0.43
724 6 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (718 bp):
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAACCAA
CCAGAGGGGCGAAATGCGCAAGGCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTAC
TGCCGCAACCCTCGGACCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCG
ACGAAACGAGCAGGCGGGCGAGCGGGCACTACACCAGCCAGAGAGACGGGAAGCGCAAGCCATGG
ATCGATAGGGTGGTAAGTCAGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGAAAGACGACTCGT
TTTCTATTTTTCACGATTGTTGAAACTTTCTACGGTTCGAGATCTTTTAAAATTTTTTCGGAAGG
AGTTTTGCCCCCAAAATTGGCAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTA
CCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTGCAGAAACT
TAAATCGCAAATGGCAGCAAACCTGTAAAATCTCAGGTGATGATCAGGCGATGGTGCCCCACAAA
AAAAAGACAGCACCACCACATGCCCAGCACAGCATGTGCTGCCACAACCATCGGGCTCCTCCGAT
CTT
Found at i:18668302 original size:26 final size:26
Alignment explanation
Indices: 18668273--18668326 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
18668263 GATCTGATCT
*
18668273 TAGACTGTGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
18668299 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
18668325 TA
1 TA
18668327 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:18669119 original size:26 final size:26
Alignment explanation
Indices: 18669081--18669133 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18669071 CTGGTTTGAT
*
18669081 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18669107 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18669133 C
1 C
18669134 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18672580 original size:26 final size:26
Alignment explanation
Indices: 18672544--18672596 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18672534 CCAATCTGAT
18672544 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18672570 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18672596 C
1 C
18672597 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18673481 original size:26 final size:26
Alignment explanation
Indices: 18673445--18673497 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18673435 CTGGTCTGAT
*
18673445 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18673471 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18673497 C
1 C
18673498 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18674746 original size:871 final size:872
Alignment explanation
Indices: 18668373--18675273 Score: 7941
Period size: 901 Copynumber: 7.9 Consensus size: 872
18668363 GGCCAAGGGT
* * ** *** * *
18668373 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGACGGACGGGCGACCCCTCGCTGCG
1 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACG
* * * *
18668438 TCGGCCAGAAAGACTGGATGCGCAAGTCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
66 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
18668503 TTCATATTTCTGCATGCCAAGGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCC
131 TTCATATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * *
18668568 TTCACGTGAAGTTTCATGGTAAGACGAGTCGTTTTCTATTTTTCACGA-TTTTCAAAGCTTTTTG
195 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA-CTTTTTA
* * * *
18668632 CGGTTCGAGATTTTTTAAAATTTTCTC-GAAAGGTGTTTTGGCTCC-AACTTGGTATACGTGATC
259 CGGTTCGAGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
18668695 CTCGTATTTTTGTTGGCATGCACAAAAGAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTG
323 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * * *
18668760 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTGCTGGCAGCAATCCTGTAAAAT
388 ACCATTTGAAAAAAGTGTCCCCATTT-AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
18668825 TTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATATGGGGCCAATATAAG
452 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* **
18668890 GGCCAAGTACCAGCACCCATCGCACATCATGTGTGCATC-C-CCCCGCTCGGTCCCCCCGATCAC
517 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-CACACCCCGC-C-G--CCCCCGATCGT
* ** * * * **
18668953 CAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGTTCCGGCGATGGCGCCCCGGTGAAGAA
577 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAA
* * * *
18669018 AAATACGGCACCAGCACATGCTCGAG-CCAGCATGTGCTGCCACAACCCTCGGTCTGGTTTGATC
642 AAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTC---------C
* * *
18669082 TTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCA
698 -----C-----AT---CT--G-AT-CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCA
* * * * * * * **
18669147 AGAAACGAGCGTGCGGGCGCTTAGTCGGCCAGAGGGGCGAGACGCACAAGCCGAGGATCAACCGG
746 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGG
* * * ** * * * * *
18669212 GTCCCTCACTGTGCACTGCCGATCTTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGG
811 GTCCCCCTCTGCGTGCTG-CGATCCTACTGCCGCAACCCTCGGTCT-ATCTGATCTTAGACTGG
* * *
18669276 GAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGA---GCGGGCGGGTGGGTGGGCACTACG
1 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACG
* * *
18669338 CCAGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
66 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
18669403 TTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
131 TTCATATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* ** **
18669468 TTTACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGT
195 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
** * *
18669533 GGTAAGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATACT
260 GGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
18669598 TGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTCCAAGATTATGAGAC
325 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * *
18669662 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCGGCAAACTTGTAAAATCT
390 CATTTGAAAAAAGTGTCCCCATTT-AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
18669727 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
454 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * *
18669792 CCAAGTACCAGCACCCATCGCACATCATGTGCGCATACCCTCCCGGCC-CCCCCGATCGTCGAAA
519 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACAC-CCC-GCCGCCCCCGATCGTCGGAA
** * * * *
18669856 CCCCAATAACGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCTCAACGAAGAAAAATA
582 CCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
* * * * ***
18669921 TGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCAGTCTGGTCTGATCTTAGA
647 CGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCCATCTGATCTTAGA
* * * * ** *
18669986 CTGCGAATGAACTCCGTATGCTTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAATCGGCTA
712 CTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * * * *
18670051 GAGGGGTGGGATGCACAAGCCGGGGATCAGCTGGGTCCCCCTCTGCCTGTTGTCGATCCTTCTAC
777 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTG-CGATCCTACTGC
* * *
18670116 CGCAACCCTCGGTTTGGTCTGATCTTAGACTAG
841 CGCAACCCTCGGTCT-ATCTGATCTTAGACTGG
* ** * ** *
18670149 GAATGAAGTAGGTATGCCTAAGCCAACCGACAAAACGA---GCAAGCGGACGGGC-GG------G
1 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACG
* * * * * *
18670204 T------G-GAGAC----T--ACTAGCCATGGATCGATAGGGTGGTAGCTGGGTATAGGCTCATC
66 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
18670256 TTCATATTTCTGAGTACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
131 TTCATATTTCTGA-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
18670321 TTCACGTGAAGTTTAATGGCAAGACGACTCATTTTCTATTTTTTACGATTTTTGAAACTTTTTAC
195 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
*** * *
18670386 AAATCGAGATTTTTTAAAATTTTTTCAGAGGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
260 GGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* *
18670451 TGTATTTTTGTTGGCATGCACAAAAAAATACAGCTAAAAACTCGAAGTGTACAAGTTTTTGTGAC
325 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
18670516 CATTTGAAAAATGTGTCCCCATTTTAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
390 CATTTGAAAAAAGTGTCCCCA-TTTAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * * *
18670581 CAAATACTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGACGAGGGATAGGGGGCTAATATAAGGG
454 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * *
18670646 CCAAGTACCAGCACCCATCGCACATCAAGTACGCACACCGTCCCCGACC-CCCTCGATCGTCGGA
519 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-ACCCCG-CCGCCCCCGATCGTCGGA
* *
18670710 ACCCCAATGTCGTCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGACGAAGAAAAAT
581 ACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * * * ** *
18670775 GCGGCACCAGCACATGGCCAAGCCCAGTATGTGCTGCCACAACCATCGGTCCTGTCTGTTCTTAG
646 GCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCCATCTGATCTTAG
* * * * * * **
18670840 ACTAGGAATGAACTTCGTATGCTTAGACTGGGAATAAGCAACCCACAAAACGAGTGTATGGGCGC
711 ACTGGGAATGAACTCCATATGCCTA-A----G--T---CAACCCACGAAACGAGCGTGCGGGCGC
* ** * * *
18670905 TCAGCCGGCTAGAGGGGCAAGATGCGCAAGCCGGGGATTGGTCGGGTCCCCCTCTACGTGCTGCT
766 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGC-
*
18670970 GATCCTACTGCCGTAACCCTCGGTCTACTCTGATCTTAGACT--
830 GATCCTACTGCCGCAACCCTCGGTCTA-TCTGATCTTAGACTGG
** * * *
18671012 --A--AACTTTGTATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGCGGGTGGGCGTGCACTAC
1 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGCGGGCGGGCACTAC
* * * * *
18671073 GTCGGCTAAAGAGACGGGTTACGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
65 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
18671138 CTTCATATTTCT-ATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
130 CTTCATATTTCTGA--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
18671202 CCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATATTTCACGATTTTTGAAACTTGTT
193 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * ** *
18671267 ACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATC
258 ACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
18671332 CTTATATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTG
323 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
18671397 ACCATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATGGCTATTGGCAGCAAACCTATAAAAT
388 ACCATTTGAAAAAAGTGTCCCCATTT-AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
18671462 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
452 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * *
18671527 GGCCAAGTACTAGCACCCATTGCACATCATGTGCGTAAACACCCCGGCC-CCCCCGATCGTCGGA
517 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCC-GCCGCCCCCGATCGTCGGA
* * ** *
18671591 ACCCTAATGCTGTCGGTCAGGTTCTCCGACGATGCTCCGACGGTGGTGCCCCGACGAAGAAAAAT
581 ACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * * * * ** *
18671656 GCAGCACTAGCACATGCTCGAGCCCAGCATGTGCTGTCC-CAACCCTCGGTTCGGTCCGATCTTA
646 GCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTG-CCGCAACCCTCGGTCCCATCTGATCTTA
* * * *
18671720 GACTGGGAACGAACTCCGTATGCCTAAGTCAACCCACGGAATGAGCGTGCGGGCGCTCAGCCGGC
710 GACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * *
18671785 CAGAGGGGCGGGATACGCAAGCCGAGGATCGGTCGGGTCCCCCTTTGCGTGCTGTCGATCCTACT
775 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTG-CGATCCTACT
18671850 GCCGCAA-CC-C--TC-A---G-TC-----C---
839 GCCGCAACCCTCGGTCTATCTGATCTTAGACTGG
* * * *
18671867 ---TG---T-C-TA-ACCTAAGCCAACTGACGAAACGA-------G-GGGTGGGCGGGTACTACG
1 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACG
* * * *
18671915 TCGAG-TAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTCAGGCACAT
66 TCG-GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
18671979 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT-ATACAATGGTCGCTTAAGC
130 CTTCATATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * *
18672043 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATATTTCACGAGTTTTAAAACTTTTTG
194 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * *
18672108 CGGTTTGCGA-TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATAC
259 CGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
18672172 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTATACAAGATTTTGTGA
324 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
18672237 CCACTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-GCTAGCAAACCTGTAAAAT
389 CCATTTGAAAAAAGTGTCCCCATTT-AAACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAAT
* * * *
18672301 CGT-TAATGCTCTTTAAGGGGGTGTGAGTTTTGGAGGTTTGATTAGGGATAGGGGGCCAATATAA
452 C-TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * *
18672365 GGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCC-CCCCCGATCGCCTG
516 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCC-GCCGCCCCCGATCGTCGG
* * * *
18672429 AACCCCAATGTCGCCGGTCAGGTTTTCC---G--G-T-----GATGGTGCCCCAACGAAGAAAAA
580 AACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
* * * * * *
18672483 TGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGTAACCCTTGGTCCAATCTGATCTTA
645 TGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCCATCTGATCTTA
18672548 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGA
710 GACTGGGAATGAA---C---T-C-----C---------A-----TATGCCTAAGTCAACCCACGA
* * * * * * * * *
18672613 AACGGGCGAGCGGGCGCTTAGCTGGCCA-AGGGGGTGGGACGCGTAAGTCGGGGATCGGCTGGGT
749 AACGAGCGTGCGGGCGCTCAGCCGGCCAGA-GGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGT
* * * * *
18672677 CCCCCACTGCGTGCTATCGATCCTACTGCAGCAACCCTCGGTCCAATCCGATCTTAGACTGG
813 CCCCCTCTGCGTGCT-GCGATCCTACTGCCGCAACCCTCGGT-CTATCTGATCTTAGACTGG
* * *
18672739 GAATGAACTCCGTATGTCTAAGCCAATCGACGAAACGAGCGGGCGAGCGGGCGGGCGGGCACTAC
1 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGCGGGCGGGCACTAC
*
18672804 -TACGGCCAGAGAGACGGGATGCGCAAGCCGTGGGTCGATAGGGTGGTAGGTGGGTTTAGGCACA
65 GT-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
18672868 TCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTTAATTCATACAATGGTCCCTTAAG
129 TCTTCATATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
18672933 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTT
193 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* *
18672998 GCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCACAAACTTGGTAGACGTGATC
258 ACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * * *
18673063 CTTGTATTTTTGTTGGCATGCGCAAAACAATTCAACTAAAAGCTAGAAGTGTACAAGATTTTGTG
323 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
18673128 ACCATTTGAAAAAAGTGTCCCCATTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATT
388 ACCATTTGAAAAAAGTGTCCCCATTTAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
18673193 TCAAATGCTCTTTAAGGGGGTGTGGGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
453 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * * * *
18673258 GCCAACTACCAGCAACCATCACACATCATGTGCGCACTC-CCCCGACGACCCCGATCGTTGGAAC
518 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCGCCGCCCCCGATCGTCGGAAC
* * * * * *
18673322 CCTAATGCCGTCGGTCAGGTTCTCAGGCGATGCTCCGATGATGGTACCCCGACGAAGAAAAATGT
583 CCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
* * * * ** *
18673387 GACACCAGCACATGCTCGAGCCCAGTATGTGCTATCGTAACCCTCGGTCTGGTCTGATCTTAGAC
648 GGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAA-CC-C--TC-GGTC----C-----C
* * *
18673452 TGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAAT
699 -----AT---C-T-G-AT-CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAAC
* * * * **
18673517 GAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCTCAAGCCAGGGATCGGCTGGGTCCTT
752 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCC
* * * * *
18673582 CTCTGCGTGCTACCGATCCTACTACCGCAACCCTCAGTCTGGTCTGATCTTAGAATGG
817 CTCTGCGTGCT-GCGATCCTACTGCCGCAACCCTCGGTCT-ATCTGATCTTAGACTGG
** * * * *
18673640 GAATGAACTCCGTATGCCTAAGCCAACCGATAAAACGAGCGGACAGGCAGGCGGGCGAGCACTAT
1 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG-CGGGCGGGCGGGCGGGCACTAC
* *
18673705 GTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACAT
65 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
18673770 CTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
130 CTTCATATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * * *
18673835 CTTCACCTGAAGTTTCAGGGCAACACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTCA
194 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * *
18673900 CGGTTTGAGATTTTTTAAAATTTTTTCAGAAGGGGTTTTGGTCCCAAACTTGGTAGACGTGATCC
259 CGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * * *
18673965 TTGCAGTTTTGTTGGCATGCACAAAATAATTCAGCTAAAAACTTGAAGTGTATAAGATTTTGTGA
324 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
18674030 CCATTTGACAAAAGTGTCCCCATTTAAGACACTTT-ATGGCTACTGGCAGCAAACCTGTAAAATC
389 CCATTTGAAAAAAGTGTCCCCATTTAA-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
18674094 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
453 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * *
18674159 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCCCACACCCC-TCGCCCCCGATCGTTGGAAC
518 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCGCCGCCCCCGATCGTCGGAAC
*
18674223 CTCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
583 CCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
* *
18674288 GGCACCAGCATAAGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCCATCTGATCTTAGAC
648 GGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCCATCTGATCTTAGAC
* * * * * *
18674353 TAGGAATGAACTCCATATGCGTAAGTCAACCTACAAAACGAGCGTGCGGGCG-TCAGTCGACCAG
713 TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * *
18674417 AGGGGCGGGATACGCAAG-CGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCGATCCTACTGCCA
778 AGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCGATCCTACTGCCG
* *
18674481 CAACCCTCGGTTTGATCGGATCTTAGACTGG
843 CAACCCTCGGTCT-ATCTGATCTTAGACTGG
* *
18674512 GAATGAACTCCGTATGCCTAAGCCAACCGAC-AAACGAGTGGTCGGGTGGGCGGGCGGGCACTAC
1 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG-CGGGCGGGCGGGCGGGCACTAC
**
18674576 ACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
65 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* **
18674641 CTTCATATTTCTGCATTCCAATGTTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
130 CTTCATATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
18674706 CCTCACGTGAAGTTTCAAT-GCAAGACGACTCGTTTTCTATTTTTCACGACTTTTGAAACTTTTT
194 CTTCACGTGAAGTTTC-ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
** ** * ** * *
18674770 GTGGTTCGAGATTTTTT-AAATTTTTTTGGAAGGATTTTTGGTTCCAAACATGGTAGACTTGATC
258 ACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
18674834 CTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
323 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
18674899 ACCATTTGAAAAAGGTGTCCCCATTTCAAACACTTTAATAGCTACTGGCAGCAAAGCTGTAAAAT
388 ACCATTTGAAAAAAGTGTCCCCATTT-AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
18674964 CTCAAATGCTCATTAAGGCGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
452 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * *
18675029 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-CTCCCGATTG-CGCA
517 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCC-GCCGCCCCCGATCGTCGGA
** * *
18675092 ACCCCAATGCCACCGGTCCGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCAACGAAGAAAAAT
581 ACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * * * ** ***
18675157 ACGGCACCAGCACATGCCCAAGCCCAACATGTGCTGCCGTAATCCTTAGTCTGGTCTGATCTTAG
646 GCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCCATCTGATCTTAG
* * * *
18675222 ACTGGGAATGAACTCCATATGCCTAAGCCAATCGACGAAACGAGCGGGCGGG
711 ACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
18675274 TGGGCGAGCG
Statistics
Matches: 5207, Mismatches: 609, Indels: 396
0.84 0.10 0.06
Matches are distributed among these distances:
827 1 0.00
828 87 0.02
831 1 0.00
833 1 0.00
834 2 0.00
835 1 0.00
836 1 0.00
838 2 0.00
839 306 0.06
840 89 0.02
841 115 0.02
842 2 0.00
843 1 0.00
850 21 0.00
851 2 0.00
852 1 0.00
853 234 0.04
854 289 0.06
855 159 0.03
856 4 0.00
858 1 0.00
859 35 0.01
860 3 0.00
861 3 0.00
862 2 0.00
863 12 0.00
864 4 0.00
865 110 0.02
866 2 0.00
867 2 0.00
869 2 0.00
870 134 0.03
871 601 0.12
872 80 0.02
873 208 0.04
874 30 0.01
875 55 0.01
876 3 0.00
877 8 0.00
878 2 0.00
879 2 0.00
880 4 0.00
881 170 0.03
882 10 0.00
883 425 0.08
887 1 0.00
889 5 0.00
890 151 0.03
891 217 0.04
892 135 0.03
893 1 0.00
895 1 0.00
896 5 0.00
897 2 0.00
898 86 0.02
899 26 0.00
900 424 0.08
901 833 0.16
902 19 0.00
903 40 0.01
905 1 0.00
906 4 0.00
910 1 0.00
915 1 0.00
920 3 0.00
921 1 0.00
923 1 0.00
924 2 0.00
925 1 0.00
926 2 0.00
927 17 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (872 bp):
GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACG
TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTGATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
GTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCGCCGCCCCCGATCGTCGGAACCCC
AATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
ACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCCATCTGATCTTAGACTGG
GAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
GGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCGATCCTACTGCCGCAA
CCCTCGGTCTATCTGATCTTAGACTGG
Found at i:18677601 original size:674 final size:680
Alignment explanation
Indices: 18676631--18679426 Score: 3116
Period size: 674 Copynumber: 4.0 Consensus size: 680
18676621 GGCCCCCTCG
* * *
18676631 ATCGTCGGAACCCCAATGCCACTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA-T
1 ATCGCCGGAACCCCAATGCC-CTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAGC
*** * *** *
18676695 GAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACTACAACCCTCGGTCCAGT
65 GAAGAAAAAAAAG-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCAGT
* * * * * * **
18676760 CCGATCTTAGACTGGGAATGAACTCCATATGCTTAAGCCAATCGACGAAATGAGCGGGCA-GGCA
129 CCAATCCTAGACTGGGAATGAACT-CGTATGCCTAAGCCAACCGACGAAATGAGCAGAAAGGGCA
* * * *
18676824 GGCGGACGGGTACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
193 GGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
18676889 GTGGGTTTAGGA-ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
258 GTGGGTTTA-GACACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
18676953 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAACGACTCGTTTTCTATTTTTCACG
322 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * *
18677018 ATTTTTGAAACTTTTTGCGGTTC-AGATTTTTTAAAATTTGTTCGGAAGGATTTTTTGTCCCAAA
387 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTTGTCCCAAA
* * * *
18677082 CATGGTAGACATGATCCTTGCATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
452 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
18677147 TGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCA-TTCAGACACTTTAATGGCTACTGAC
517 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
18677211 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
582 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
18677276 AGGGGGCC-ATAT-ATGGCCAAGT-ACCCCCCCA
647 AGGGGGCCAATATAAGGGCCAAGTCACCCCCCCA
* * * * *
18677307 ATCGCCGGAACCCCAATGCCGCTGGTTATGTTCTCCGATGATGCTCTGGCGATGGTGCCCCGA-C
1 ATCGCCGGAACCCCAATGCC-CTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAGC
*
18677371 GAA-AAAAAATATAGCACCAGCACATGCCCGAGCCCAGCATTTGCTGCCGTAACCCTCAGT-CAG
65 GAAGAAAAAA-A-AGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCAG
* * *
18677434 TCCAATCTTAGACTGGGAATGAACTCGTATGCCTAAGCCAACCGACGAATTGAGC-GAAAGGGCG
128 TCCAATCCTAGACTGGGAATGAACTCGTATGCCTAAGCCAACCGACGAAATGAGCAGAAAGGGCA
* *
18677498 GGCAGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
193 GGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * *
18677563 GTGGGTTTAGACACATCGTCGTATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAGA
258 GTGGGTTTAGACACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * * * * *
18677628 GAATGGTCCTTTAAGCCTTGACGTGAAGTTTCATTGCAAGACGACTCCTTTTCTAATTTTCAAGA
323 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * *
18677693 TTTTTGAAATTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCAGAAAGA-TTTTTTTCCCCAAA
388 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTTGT-CCCAAA
*
18677757 -TTGGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
452 CTT-GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
18677821 GTGTACAAGATTTTGTGACCATTTG-AAAAATTGTCCCCATTTCAGACACTTTAATGGCTACTGG
516 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
18677885 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCAAGGTTTGATGAGGGA
581 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
18677950 TAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACA
646 TAGGGGGCCAATATAAGGGCCAAGT--CA-C-CCC--C-C-CA
* *
18677993 TTATGTGCGCACACCCGCCCCGGCTCCCCCGATCATCAGAACCCTAATGCCGTCAGTCAGGTTCT
1 --A--T---------CG--CC-G-------GA--A-C----CCC-AATGCCCT-GGTCAGGTTCT
* ** * ***
18678058 CCGGCGATGCTCCGGTGAAGGTGCCCCGA-CGAAGAAAAATGTGCCACCAGCACAT-CCTC-AGG
34 CCGACGATGCTCCGACGATGGTGCCCCGAGCGAAGAAAAAAAAG-CACCAGCACATGCC-CGA-G
* * * * * *
18678120 CCCAGCATGTGCTGCAGCAACCCTCGGTTCAGTCCGATCCTAGACTGAGAATGAACTCCGTATGC
96 CCCAGCATGTGCTGCCGTAACCCTCAGTCCAGTCCAATCCTAGACTGGGAATGAACT-CGTATGC
* ** *** * * *
18678185 CTAAGCCAACCGACAAAACAAACGGGTG-GGTGGGTGGGCGGGCGGGCGGGCACTACACTGGCCA
160 CTAAGCCAACCGAC----GAAA----TGAGCAGAAAGGGCAGGCGGGCGGGCACTACACCGACCA
* * * * *
18678249 GAGAGACGTGATGCGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCCTAT
217 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATAT
* *
18678314 TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTTACGT
282 TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* *
18678379 GAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGG
347 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGG
* * * * *
18678444 GAATTTTTTAAAATATTTTCAGAAGGAGATATAGCCCCAAACTTGGTAGACGTGATCCTTGTATT
412 G-ATTTTTTAAAATTTTTTCAGAAGGAGTTTTTGTCCCAAACTTGGTAGACGTGATCCTTGTATT
*
18678509 TTTGATGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
476 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
18678574 AAAAAAGTGTCCCCATTTCAGACACTTTTATGGATACTGGCAGCAAACCTGTAAAATCTCAAATG
541 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* ** *
18678639 CTCTTTAATGGGGTGTGAGTTCTCGAGGTTTGATGAAAGATAGGGGGCCAATAAAAGGGCCAAAG
606 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-AAG
*
18678704 ACCAGCACCCAATGCACATCATGTGCGTA
670 ----TCACCC----C-C--C-----C--A
* *
18678733 CACCCCCTCGGCCCCCCCGATTGCCGGAACCCCACTGCCTTCGGTCAGGTTCTCCGACGATGCTC
1 -A-----T---------C----GCCGGAACCCCAATGCCCT-GGTCAGGTTCTCCGACGATGCTC
* *** * * *
18678798 TGACGATGGTGCCCC-AGCGAAGAAAAAGCGGCACCAGCACAAGCCCAAGCCCAGCATGTGGTGC
46 CGACGATGGTGCCCCGAGCGAAGAAAAAAAAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * * *
18678862 CGTATCCCTAAGTCCGGTCCGGTCTGATCCTAGACTGGGAATGAACTCTGTATCCCTAAGCCAAC
111 CGTAACCCTCAGTCCAGT-C---C-AATCCTAGACTGGGAATGAACTC-GTATGCCTAAGCCAAC
* * *** * * *
18678927 TGACAAAATGAGC-GGGTGGGCAGGCGGGCGTGCACTACACCGGCCAGAGAAACGGGATGCGCAA
170 CGACGAAATGAGCAGAAAGGGCAGGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAA
* * *
18678991 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTAGGTGCCAATGCCA
235 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTACGTGCCAATGCCA
18679056 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
300 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** *
18679121 GACTCGTTTTCTATTTTTTACGATTTTCAAAACTTTTGGCGGTTCGGGATTTTTTAAAATTTTTT
365 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
18679186 CGGAAGGAGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCGTGCACAAAA
430 CAGAAGGAGTTTTTGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
18679251 CAATTCAGCTAAAAACT-GAAGGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTT
495 AAATTCAGCTAAAAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
18679315 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGA
559 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
18679380 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
624 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
18679427 ACCAGCACCC
Statistics
Matches: 1815, Mismatches: 201, Indels: 166
0.83 0.09 0.08
Matches are distributed among these distances:
673 4 0.00
674 245 0.13
675 236 0.13
676 102 0.06
677 10 0.01
680 1 0.00
681 1 0.00
682 3 0.00
684 1 0.00
685 1 0.00
686 2 0.00
688 1 0.00
690 1 0.00
699 2 0.00
701 2 0.00
702 1 0.00
709 2 0.00
711 1 0.00
712 1 0.00
716 8 0.00
717 79 0.04
718 30 0.02
719 21 0.01
722 6 0.00
723 233 0.13
724 213 0.12
725 1 0.00
726 1 0.00
727 243 0.13
728 170 0.09
729 123 0.07
730 5 0.00
731 3 0.00
732 41 0.02
733 2 0.00
734 3 0.00
736 2 0.00
738 1 0.00
739 1 0.00
740 1 0.00
742 7 0.00
743 1 0.00
744 2 0.00
746 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (680 bp):
ATCGCCGGAACCCCAATGCCCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAGCG
AAGAAAAAAAAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCAGTCC
AATCCTAGACTGGGAATGAACTCGTATGCCTAAGCCAACCGACGAAATGAGCAGAAAGGGCAGGC
GGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGACACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
TTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTTGTCCCAAACTTG
GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTCACCCCCCCA
Found at i:18677929 original size:675 final size:680
Alignment explanation
Indices: 18676631--18679426 Score: 3123
Period size: 727 Copynumber: 4.0 Consensus size: 680
18676621 GGCCCCCTCG
* * *
18676631 ATCGTCGGAACCCCAATGCCACTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA-T
1 ATCGCCGGAACCCCAATGCC-CTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAGC
*** * *** *
18676695 GAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACTACAACCCTCGGTCCAGT
65 GAAGAAAAAAAAG-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCAGT
* * * * * * **
18676760 CCGATCTTAGACTGGGAATGAACTCCATATGCTTAAGCCAATCGACGAAATGAGCGGGCA-GGCA
129 CCAATCCTAGACTGGGAATGAACT-CGTATGCCTAAGCCAACCGACGAAATGAGCAGAAAGGGCA
* * * *
18676824 GGCGGACGGGTACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
193 GGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
18676889 GTGGGTTTAGGA-ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
258 GTGGGTTTA-GACACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
18676953 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAACGACTCGTTTTCTATTTTTCACG
322 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * * *
18677018 ATTTTTGAAACTTTTTGCGGTTC-AGATTTTTTAAAATTTGTTCGGAAGGATTTTTTGTCCCAAA
387 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTTGCCCCAAA
* * * *
18677082 CATGGTAGACATGATCCTTGCATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
452 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
18677147 TGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCA-TTCAGACACTTTAATGGCTACTGAC
517 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
18677211 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
582 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
18677276 AGGGGGCC-ATAT-ATGGCCAAGT-ACCCCCCCA
647 AGGGGGCCAATATAAGGGCCAAGTCACCCCCCCA
* * * * *
18677307 ATCGCCGGAACCCCAATGCCGCTGGTTATGTTCTCCGATGATGCTCTGGCGATGGTGCCCCGA-C
1 ATCGCCGGAACCCCAATGCC-CTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAGC
*
18677371 GAA-AAAAAATATAGCACCAGCACATGCCCGAGCCCAGCATTTGCTGCCGTAACCCTCAGT-CAG
65 GAAGAAAAAA-A-AGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCAG
* * *
18677434 TCCAATCTTAGACTGGGAATGAACTCGTATGCCTAAGCCAACCGACGAATTGAGC-GAAAGGGCG
128 TCCAATCCTAGACTGGGAATGAACTCGTATGCCTAAGCCAACCGACGAAATGAGCAGAAAGGGCA
* *
18677498 GGCAGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
193 GGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * *
18677563 GTGGGTTTAGACACATCGTCGTATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAGA
258 GTGGGTTTAGACACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * * * * *
18677628 GAATGGTCCTTTAAGCCTTGACGTGAAGTTTCATTGCAAGACGACTCCTTTTCTAATTTTCAAGA
323 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * * *
18677693 TTTTTGAAATTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCAGAAAGATTTTTTTCCCCAAA-
388 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTTGCCCCAAAC
*
18677757 TTGGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
453 TT-GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
18677822 TGTACAAGATTTTGTGACCATTTG-AAAAATTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
517 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
18677886 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCAAGGTTTGATGAGGGAT
582 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
18677951 AGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACA
647 AGGGGGCCAATATAAGGGCCAAGT--CA-C-CCC--C-C-CA
* *
18677993 TTATGTGCGCACACCCGCCCCGGCTCCCCCGATCATCAGAACCCTAATGCCGTCAGTCAGGTTCT
1 --A--T---------CG--CC-G-------GA--A-C----CCC-AATGCCCT-GGTCAGGTTCT
* ** * ***
18678058 CCGGCGATGCTCCGGTGAAGGTGCCCCGA-CGAAGAAAAATGTGCCACCAGCACAT-CCTC-AGG
34 CCGACGATGCTCCGACGATGGTGCCCCGAGCGAAGAAAAAAAAG-CACCAGCACATGCC-CGA-G
* * * * * *
18678120 CCCAGCATGTGCTGCAGCAACCCTCGGTTCAGTCCGATCCTAGACTGAGAATGAACTCCGTATGC
96 CCCAGCATGTGCTGCCGTAACCCTCAGTCCAGTCCAATCCTAGACTGGGAATGAACT-CGTATGC
* ** *** * * *
18678185 CTAAGCCAACCGACAAAACAAACGGGTG-GGTGGGTGGGCGGGCGGGCGGGCACTACACTGGCCA
160 CTAAGCCAACCGAC----GAAA----TGAGCAGAAAGGGCAGGCGGGCGGGCACTACACCGACCA
* * * * *
18678249 GAGAGACGTGATGCGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCCTAT
217 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATAT
* *
18678314 TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTTACGT
282 TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* *
18678379 GAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGG
347 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGG
* * * *
18678444 GAATTTTTTAAAATATTTTCAGAAGGAGATATAGCCCCAAACTTGGTAGACGTGATCCTTGTATT
412 G-ATTTTTTAAAATTTTTTCAGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
18678509 TTTGATGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
476 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
18678574 AAAAAAGTGTCCCCATTTCAGACACTTTTATGGATACTGGCAGCAAACCTGTAAAATCTCAAATG
541 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* ** *
18678639 CTCTTTAATGGGGTGTGAGTTCTCGAGGTTTGATGAAAGATAGGGGGCCAATAAAAGGGCCAAAG
606 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-AAG
*
18678704 ACCAGCACCCAATGCACATCATGTGCGTA
670 ----TCACCC----C-C--C-----C--A
* *
18678733 CACCCCCTCGGCCCCCCCGATTGCCGGAACCCCACTGCCTTCGGTCAGGTTCTCCGACGATGCTC
1 -A-----T---------C----GCCGGAACCCCAATGCCCT-GGTCAGGTTCTCCGACGATGCTC
* *** * * *
18678798 TGACGATGGTGCCCC-AGCGAAGAAAAAGCGGCACCAGCACAAGCCCAAGCCCAGCATGTGGTGC
46 CGACGATGGTGCCCCGAGCGAAGAAAAAAAAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * * *
18678862 CGTATCCCTAAGTCCGGTCCGGTCTGATCCTAGACTGGGAATGAACTCTGTATCCCTAAGCCAAC
111 CGTAACCCTCAGTCCAGT-C---C-AATCCTAGACTGGGAATGAACTC-GTATGCCTAAGCCAAC
* * *** * * *
18678927 TGACAAAATGAGC-GGGTGGGCAGGCGGGCGTGCACTACACCGGCCAGAGAAACGGGATGCGCAA
170 CGACGAAATGAGCAGAAAGGGCAGGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAA
* * *
18678991 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTAGGTGCCAATGCCA
235 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTACGTGCCAATGCCA
18679056 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
300 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** *
18679121 GACTCGTTTTCTATTTTTTACGATTTTCAAAACTTTTGGCGGTTCGGGATTTTTTAAAATTTTTT
365 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
18679186 CGGAAGGAGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCGTGCACAAAA
430 CAGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
18679251 CAATTCAGCTAAAAACT-GAAGGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTT
495 AAATTCAGCTAAAAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
18679315 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGA
559 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
18679380 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
624 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
18679427 ACCAGCACCC
Statistics
Matches: 1816, Mismatches: 202, Indels: 162
0.83 0.09 0.07
Matches are distributed among these distances:
673 4 0.00
674 239 0.13
675 242 0.13
676 102 0.06
677 10 0.01
680 1 0.00
681 1 0.00
682 3 0.00
684 1 0.00
685 1 0.00
686 2 0.00
688 1 0.00
690 1 0.00
699 2 0.00
701 2 0.00
702 1 0.00
709 2 0.00
711 1 0.00
712 1 0.00
716 8 0.00
717 79 0.04
718 30 0.02
719 21 0.01
722 6 0.00
723 233 0.13
724 213 0.12
725 1 0.00
726 1 0.00
727 243 0.13
728 173 0.10
729 121 0.07
730 5 0.00
731 3 0.00
732 41 0.02
733 2 0.00
734 3 0.00
736 2 0.00
738 1 0.00
739 1 0.00
740 1 0.00
742 7 0.00
743 1 0.00
744 2 0.00
746 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (680 bp):
ATCGCCGGAACCCCAATGCCCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAGCG
AAGAAAAAAAAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCAGTCC
AATCCTAGACTGGGAATGAACTCGTATGCCTAAGCCAACCGACGAAATGAGCAGAAAGGGCAGGC
GGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGACACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
TTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTTGCCCCAAACTTG
GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTCACCCCCCCA
Found at i:18679156 original size:724 final size:716
Alignment explanation
Indices: 18677299--18679584 Score: 3045
Period size: 723 Copynumber: 3.2 Consensus size: 716
18677289 TGGCCAAGTA
* * * * * * *
18677299 CCCCCCCAATCGCCGGAACCCCAATGCCGCTGGTTATGTTCTCCGATGATGCTCTGGCGATGGTG
1 CCCCCCCGATCACCGGAACCCCAATGCCTC-GGTCAGGTTCTCCGACGATGCTCTGACGATGGTG
* * * * *
18677364 CCCCGACGAAAAAAAATATAGCACCAGCACATGCCCGAGCCCAGCATTTGCTGCCGTAACCCTCA
65 CCCCGACGAAGAAAAATATGGCACCAGCACAAGCCCAAGCCCAGCATGTGCTGCCGTAACCCT-A
* * * * * **
18677429 GTCAGTC--CAATCTTAGACTGGGAATGAACTCGTATGCCTAAGCCAACCGACGAATTGAGCGAA
129 GTCGGTCGTCGATCCTAGACTGGGAATGAACTCGTATGCCTAAGCCAACCGACAAAATGAGCGGG
* * * *
18677492 AGGGCGGGCAGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
194 TGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * * *
18677557 TGGTAGGTGGGTTTAGACACATCGTCGTATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAA
259 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAA
* * * * * * *
18677622 TTCAGAGAATGGTCCTTTAAGCCTTGACGTGAAGTTTCATTGCAAGACGACTCCTTTTCTAATTT
324 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
* * * * * **
18677687 TCAAGATTTTTGAAATTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCAGAAAGATTTTTTTCC
389 TCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCC
18677752 CCAAA-TTGGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
454 CCAAACTT-GGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
18677816 TCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAATTGTCCCCATTTCAGACACTTTAATGGCT
518 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
18677880 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCAAGGTTTGATG
583 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
18677945 AGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATTATGTGCGCACACCCG
648 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-
18678010 CCCCGG
711 CCCCGG
* * * * * * * ** *
18678016 CTCCCCCGATCATCAGAACCCTAATGCCGTCAGTCAGGTTCTCCGGCGATGCTCCGGTGAAGGTG
1 CCCCCCCGATCACCGGAACCCCAATGCC-TCGGTCAGGTTCTCCGACGATGCTCTGACGATGGTG
* * * * * *
18678081 CCCCGACGAAGAAAAATGTGCCACCAGCAC-ATCCTCAGGCCCAGCATGTGCTGCAGCAACCC--
65 CCCCGACGAAGAAAAATATGGCACCAGCACAAGCC-CAAGCCCAGCATGTGCTGCCGTAACCCTA
*
18678143 -TCGGTTCAGTCCGATCCTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAAA
129 GTCGG-TC-GT-CGATCCTAGACTGGGAATGAACT-CGTATGCCTAAGCCAACCGAC---A-AAA
* * * * * *
18678207 CGGGTGGGTGGGTGGGCGGGCGGGCGGGCACTACACTGGCCAGAGAGACGTGATGCGCAAGTCAT
186 ----TGAGCGGGTGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGT
*
18678272 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCCTATTTCTACGTGCCAATGCCATTTTT
247 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
* *
18678337 ATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTC
312 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* *
18678402 ATTTTTTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGAATTTTTTAAAATATTTTCAGA
377 ATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGG-ATTTTTTAAAATTTTTTCAGA
* * * *
18678467 AGGAGATATAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGATGGCATGCACAAAAAAAT
441 AGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAAT
18678532 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
506 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
18678597 ACTTTTATGGATACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCT
571 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
** *
18678662 CGAGGTTTGATGAAAGATAGGGGGCCAATAAAAGGGCCAAAG-ACCAGCACCCAAT-GCACATCA
636 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-AAGTACCAGCACCC-ATCGCACATCA
*
18678725 TGTGCGTACACCCCCTCGG
699 TGTGCGCACACCCCC-CGG
** *
18678744 CCCCCCCGATTGCCGGAACCCCACTGCCTTCGGTCAGGTTCTCCGACGATGCTCTGACGATGGTG
1 CCCCCCCGATCACCGGAACCCCAATGCC-TCGGTCAGGTTCTCCGACGATGCTCTGACGATGGTG
** * *
18678809 CCCC-AGCGAAGAAAAA-GCGGCACCAGCACAAGCCCAAGCCCAGCATGTGGTGCCGTATCCCTA
65 CCCCGA-CGAAGAAAAATATGGCACCAGCACAAGCCCAAGCCCAGCATGTGCTGCCGTAACCCT-
* *
18678872 AGTCCGGTCCGGTCTGATCCTAGACTGGGAATGAACTCTGTATCCCTAAGCCAACTGACAAAATG
128 AGT-CGGT-C-GTC-GATCCTAGACTGGGAATGAACTC-GTATGCCTAAGCCAACCGACAAAATG
* * *
18678937 AGCGGGTGGGCAGGCGGGCGTGCACTACACCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCG
188 AGCGGGTGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *
18679002 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTAGGTGCCAATGCCATTTTTATGGCT
253 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
*
18679067 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
318 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
* ** * *
18679132 TATTTTTTACGATTTTCAAAACTTTTGGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
383 TATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTT
* * * *
18679197 TTGGGCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCGTGCACAAAACAATTCAGCTA
448 TTAGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
18679262 AAAACT-GAAGGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTA
513 AAAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
*
18679326 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGT
577 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
18679391 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
642 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
18679456 CACCCCCCGG
707 CACCCCCCGG
* * * * * * *
18679466 CCCCCCCGATCATCGAAACCCCAACGTCGCT-GGTTAGGTTCTCCGACAACGCT-TCGACAATGG
1 CCCCCCCGATCACCGGAACCCCAATG-C-CTCGGTCAGGTTCTCCGACGATGCTCT-GACGATGG
* * *
18679529 TGCCCCGACGAAGAAAAATATGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGC
63 TGCCCCGACGAAGAAAAATATGGCACCAGCACAAGCCCAAGCCCAGCATGTGCTGC
18679585 TACAACCCTC
Statistics
Matches: 1365, Mismatches: 164, Indels: 74
0.85 0.10 0.05
Matches are distributed among these distances:
713 3 0.00
714 2 0.00
716 2 0.00
717 96 0.07
718 21 0.02
719 21 0.02
721 1 0.00
722 73 0.05
723 298 0.22
724 215 0.16
727 243 0.18
728 192 0.14
729 144 0.11
730 5 0.00
731 4 0.00
732 45 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (716 bp):
CCCCCCCGATCACCGGAACCCCAATGCCTCGGTCAGGTTCTCCGACGATGCTCTGACGATGGTGC
CCCGACGAAGAAAAATATGGCACCAGCACAAGCCCAAGCCCAGCATGTGCTGCCGTAACCCTAGT
CGGTCGTCGATCCTAGACTGGGAATGAACTCGTATGCCTAAGCCAACCGACAAAATGAGCGGGTG
GGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
ACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCC
AAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
G
Found at i:18679644 original size:26 final size:26
Alignment explanation
Indices: 18679608--18679658 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18679598 CCCATCCGAT
*
18679608 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18679634 CTTAGGCTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
18679659 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18680525 original size:26 final size:26
Alignment explanation
Indices: 18680496--18680548 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18680486 CTGATCCGAT
* *
18680496 CTTAGACTGGTAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18680522 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18680548 C
1 C
18680549 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18680713 original size:888 final size:888
Alignment explanation
Indices: 18678882--18681415 Score: 3609
Period size: 893 Copynumber: 2.8 Consensus size: 888
18678872 AGTCCGGTCC
* * * * * * * ** *
18678882 GGTCTGATCCTAGACTGGGAATGAACTCTGTATCCCTAAGCCAACTGACAAAATGAGCGGGTGGG
1 GGTCTAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCAAGCGGG
* * * *
18678947 CAGGCGGGCGTGCACTACACCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
66 CGGGC-AGAG-GCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* **
18679012 AGGTGGGTTTAGGCACATCTTCATATTCCTAGGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
129 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
18679077 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTAC
194 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
18679142 GATTTTCAAAACTTTTGGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGGCCCAA
259 GATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GACCCAA
* * *
18679207 ACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCGTGCACAAAACAATTCAGCTAAAAACT-GAA
323 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
18679271 GGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTG
388 -GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTG
*
18679336 GCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
452 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
*
18679401 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGG
517 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * * * *
18679466 CCCCCCCGATCATCGAAACCCCAACGTCGCTGGTTAGGTTCTCCGACAACGCTTCGACAATGGTG
582 CCCCCCCGATCACCGGAACCCCAATGCCGC-GGTCAGGTTCTCCG-----G--T-G---ATGGTG
*
18679531 CCCCGACGAAGAAAAATATGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCTACAACCCTCG
635 CCCCGACGAAGAAAAATCTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCTACAACCCTCG
*
18679596 GTCCCATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGGCTGGGAATGAACTCCGTATAC
700 GTCCCATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATAC
* * *
18679661 CTAAGTCAACCCACGAAACGAGCGTACGAGTGTTCAGCCGGCCAGAGGGTCGGGATGCACAAGTC
765 CTAAGTCAACCCACGAAACGAGCGTACGAGCGCTCAGCCGGCCAGAGGGTCGGGATGCACAAGCC
* * **
18679726 GGGGATCGGTCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTGCTGCAACCCTCGATCT
830 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAACCCTCGATCT
* * *
18679785 GGTCTGATCTTAGATTGGGAATGAACTCCGTATACCTAAG-CAAGCCGATGAAACGAGCAAGCGG
1 GGTCTAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAA-CCGACGAAACGAGCAAGCGG
* * * *
18679849 GC-GGC-G-GGCGCTACGCCGACCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTA
65 GCGGGCAGAGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
18679911 GGTGGGTTTAGGCACATCTTCTTATTTCTACTTGCCAATGCCAATTTTATGGCTTGTAAATTCAT
130 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
18679976 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGCTTTCTATTTTTCATG
195 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * ** *
18680041 ATTTTTAAAACTTTTTGCGATTTGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGACCCAATC
260 ATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCAAAC
* *
18680106 TTGGTAGACATCATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
325 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
18680171 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCA
390 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
18680236 GCAAGCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTTGAGGTTTGATGAGGGATA
455 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * * *
18680301 GGGGGCCAATATAAGGGCCAACTACCAGCACCCAACGCACATCATGTGTGCACTCCCCACCCGGG
520 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCC-CCCGGC
* *
18680366 CCCCCCGATCACCGGAACCCCAATACCGCAGGTCAGGTTATCCGGTGATGGTGCCCCGACGAAGA
583 CCCCCCGATCACCGGAACCCCAATGCCGC-GGTCAGGTTCTCCGGTGATGGTGCCCCGACGAAGA
* * * * * * * **
18680431 AACATCTGGCACAAGCACAAGCTCGAGCCCAACATGTGTTG-TCACAATCCTTGGTCTGATCCGA
647 AAAATCTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCT-ACAACCCTCGGTCCCATCCGA
* *
18680495 TCTTAGACTGGTAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
711 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACC
** * * *
18680560 CACGAAACGAGCGTGTGGGCGCTCAGTCGGCCAGAGAGG-CGGGATGCGCAAGCCGGGGATCGGT
776 CACGAAACGAGCGTACGAGCGCTCAGCCGGCCAGAG-GGTCGGGATGCACAAGCCGGGGATCGGT
* *
18680624 CGGGTCCCCCTTTGCGTGCTGTCGATCCTGCTACCACAACCCTCAGTTC-
840 CGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAACCCTC-GATCT
*
18680673 GGT-TCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAAGCGG
1 GGTCT-AATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCAAGCGG
* *
18680737 GCGGGCATGCAGTCACTACACCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGG
65 GCGGGCA-G-AGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
18680802 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
128 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
18680867 AAACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCTTGGCAAG-CTGACTCGTTTTCTATTTTTC
193 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-GACTCGTTTTCTATTTTTC
* ** * **
18680931 ACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTCACAAA
257 ACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGAC-CC
*
18680996 AAAGTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACAATTCAGCTAAAAACTC
321 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTC
* * *
18681061 GAAGTGTATAAGATTTTGTGACCATTGGAAAAAAGTG-TCCCTATTTCAGACACATTAATGGCTA
385 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCC-ATTTCAGACACTTTAATGGCTA
18681125 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
449 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
18681190 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
514 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * **
18681255 CGGCCCCCCCGATCGCCAGAACCCCAATGCCGTCTGTCAGGTTCTCCGACGATGGTGCCCCGACG
579 CGGCCCCCCCGATCACCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGGTGATGGTGCCCCGACG
* ** *
18681320 AAGAAAAATGC-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCTGT-CCAG
643 AAGAAAAAT-CTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCTACAACCCTCGGTCCCA-
* * *
18681383 TCTGATCTTAGACTAGGAATGAACTCCGTATGC
706 TCCGATCTTAGACTGGGAATGAACTCTGTATGC
18681416 CTAAGCCAAC
Statistics
Matches: 1456, Mismatches: 153, Indels: 54
0.88 0.09 0.03
Matches are distributed among these distances:
887 2 0.00
888 280 0.19
889 11 0.01
891 2 0.00
892 3 0.00
893 350 0.24
894 54 0.04
895 191 0.13
897 235 0.16
898 228 0.16
899 42 0.03
900 1 0.00
902 6 0.00
903 51 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
GGTCTAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCAAGCGGG
CGGGCAGAGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
TTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCAAACT
TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
CCCGATCACCGGAACCCCAATGCCGCGGTCAGGTTCTCCGGTGATGGTGCCCCGACGAAGAAAAA
TCTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCTACAACCCTCGGTCCCATCCGATCTTA
GACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGA
AACGAGCGTACGAGCGCTCAGCCGGCCAGAGGGTCGGGATGCACAAGCCGGGGATCGGTCGGGTC
CCCCTCTGCGTGCTGTCGATCCTGCTACCACAACCCTCGATCT
Found at i:18682254 original size:707 final size:701
Alignment explanation
Indices: 18680679--18682818 Score: 3020
Period size: 707 Copynumber: 3.0 Consensus size: 701
18680669 GTTCGGTTCA
*
18680679 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAAGCGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CAAGCGGGCTGGCA
* *
18680744 TGCAGTCAC-TACACCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
62 --CA---ACGT-TA---GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
18680808 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAA
118 GGTTTAGGCACATCTTCATATTTCTGCAGGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
18680873 TGGTCCCTTAGGCCTTCACGTGAAGTTTCTTGGCAAG-CTGACTCGTTTTCTATTTTTCACGATT
183 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-GACTCGTTTTCTATTTTTCACGATT
* ** *
18680937 TTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTCACAAAAAAGTT
247 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTCACACCAAACTT
18681002 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACAATTCAGCTAAAAACTCGAAGTG
312 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTG
* * *
18681067 TATAAGATTTTGTGACCATTGGAAAAAAGTGTCCCTATTTCAGACAC-ATTAATGGCTACTGGCA
376 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTA-TAATGGCTACTGGCA
18681131 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
440 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
18681196 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
505 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGACC
* * *
18681261 CCCCGATCGCCAGAACCCCAATG-CC-GTC---TGTC-AGG-TTCTCCGACGATGGTGCCCCGAC
570 CCCCGATCGCCAGAA-CCCAATGCCCGGTCAGTTCTCTAGGATGCTCCGACGATGGTGCCCC-AA
* *
18681319 G-AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCTGTCCAG
633 GAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCAG
*
18681383 TCTG
698 TCCG
* * *
18681387 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAGCAAGCGGG-TAGGCACTA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCT-GGCACAA
* * * * *
18681451 CGCTGGCCTGAGAGAAGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
65 CGTTAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
18681516 TCTTCATATTTCTGC-GTGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAACGGTCCTTTAA
130 TCTTCATATTTCTGCAG-GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
18681580 GCCTTCACGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTCCATGATTTTTAAAACTTTT
194 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * ** *
18681645 TGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTTCTCCAAACTTGGTAGACGTGAT
259 TACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTCACACCAAACTTGGTAGACGTGAT
*
18681710 CCTTGTATTTTTGTTGGCATGCACAAAAAAGTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
324 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
18681775 GACCATTTCAAAAAAGTGTCCCCATTTCAGACACTATAATGGCTACTAGCAGCAAACATGTAAAA
389 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTATAATGGCTACTGGCAGCAAACCTGTAAAA
18681840 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
454 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * *
18681905 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACTGCCCCTGACCCCCCGATCACCGG
519 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCTGACCCCCCGATCGCCAG
*
18681970 AACCCTAATGCTACCGGTCAAGTTCTCTGGCGATGCTCCGACGATGGTGCCCCAAGAAAGAAAAA
583 AACCC-AATGC--CCGGTC-AGTTCTCTAG-GATGCTCCGACGATGGTGCCCCAAGAAAGAAAAA
* * * * *
18682035 TGCTGCACCAGCACGTGCTCGAGCTCAACATGTGCTGCCGTAACCCTCGGTCCAGTCCG
643 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCAGTCCG
* *
18682094 ATCTTAGAGTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACAAGCGGGCTGGCACAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCTGGCACAAC
* *
18682159 GTTAGCCAGAGAGACGGGATGCGTAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
66 GTTAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
18682224 CTTCATATTTCTGCAGGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
131 CTTCATATTTCTGCAGGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
18682289 CTTCA-GATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTC
196 CTTCACG-TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* ** * * *
18682353 ACGGTTCAGGATTTTTT-AAATTTCTTTCGGAAGGAGTTTTGGCCCCAAACTAGGTAGACATGAT
260 ACGGTTCGGGATTTTTTAAAATTT-TTTCGGAAGGAGTTTTCACACCAAACTTGGTAGACGTGAT
* * *
18682417 CCTTTTATTTTTGTTGGCATGTACAAAAAAATTCAGCT-AAAACTCGAAGTGTACAAGTTTTTGT
324 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
18682481 GACCATTTGAAAAAAGTGTCCCCATTTCTGACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAA
389 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTATAATGGCTACTGGCAGCAAACCTGTAAAA
*
18682546 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
454 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * **
18682611 GGGCCAAGTGCCAGCACCCATCGCTCATCATCTGCGCAC-CCCCCCTGACCCCATTGATCGCCAG
519 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGACCCC-CCGATCGCCAG
* ** * *
18682675 AACCCAGTGCCGTCGGTCAGATTCT-TCAGTGATGCTCCGGTGATGGTGCCCCGACAAAGAAAAA
583 AACCCAATGCC--CGGTCAG-TTCTCT-AG-GATGCTCCGACGATGGTGCCCCAAGAAAGAAAAA
* * * * * **
18682739 TGCGGTACCAACACATGCCCGAGCCCAGCATGTACTGTCGCAACCCTCGGTCTGGTCCG
643 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCAGTCCG
18682798 ATCTTAGACTGGGAATGAACT
1 ATCTTAGACTGGGAATGAACT
18682819 TTGTATGCTT
Statistics
Matches: 1280, Mismatches: 124, Indels: 60
0.87 0.08 0.04
Matches are distributed among these distances:
695 201 0.16
696 281 0.22
697 1 0.00
699 4 0.00
700 3 0.00
702 2 0.00
703 3 0.00
704 137 0.11
705 14 0.01
706 194 0.15
707 395 0.31
708 45 0.04
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (701 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCTGGCACAAC
GTTAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTGCAGGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTCACACCAAACTTGGTAGACGTGATCC
TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAGACACTATAATGGCTACTGGCAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGACCCCCCGATCGCCAGAAC
CCAATGCCCGGTCAGTTCTCTAGGATGCTCCGACGATGGTGCCCCAAGAAAGAAAAATGCGGCAC
CAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCAGTCCG
Found at i:18682851 original size:26 final size:26
Alignment explanation
Indices: 18682800--18682852 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18682790 CTGGTCCGAT
* ***
18682800 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18682826 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
18682852 C
1 C
18682853 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18685747 original size:26 final size:26
Alignment explanation
Indices: 18685711--18685762 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
18685701 CAATCTGATA
18685711 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18685737 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18685763 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:18686164 original size:902 final size:904
Alignment explanation
Indices: 18683198--18686659 Score: 4819
Period size: 902 Copynumber: 3.9 Consensus size: 904
18683188 CTCGGTCCGG
* * * * * *
18683198 TCCGATCTTAGACTGGGAATGGACTCCGTATGACTAAGCCAACCGACGAAATGAGGGGGCGGGGG
1 TCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGTGGGCG
*
18683263 GTGCGGGCGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
66 G-GCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * **
18683328 GGTGTGTATAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTCAATGGCTTGTAAATTCAT
130 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * * * * *
18683393 AAAATGGTCCCCTAAGCCTTCACGTAAAGTTTCACGGCAAGATGAATCGTTTTCAATTTTTCATG
195 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* *
18683458 A-TTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAAATTTTTCGAAAGGAGTTTTGTCCCCAA
260 ATTTTTCAAAA-TTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAA
* * * * *
18683522 ACATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCACCTAAAAACTCAAA
324 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * * ** *
18683587 GTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCA-TTCCGAACACTTTACTTACTACCG
389 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTG
18683651 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
453 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
*
18683716 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACATCCCCCCA
518 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG
* * ** *
18683781 GCCCCCCTGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGATGATGCTTCGACGATGGT
582 GCCCCCCTGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGGT
*** *
18683846 GCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCCAGCCCAGCATGTGCTGCCA-CAACCCT
647 GCCCCGACGAAGAAAAATGCAACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAGCAACCCT
* * * *
18683910 CAGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTGT
712 CAGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
** * *
18683975 GCCTAAGTCAATGCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAG
777 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAG
* * * * * * **
18684040 CC-GTGTATC-AGTCGGTCCCCCTCTACGTGCTGCCAATCCTGCTAT-GACAACCCTC-AGTCCA
842 CCAG-GGATCGACTCGGTCCCCCTCTGCGTGCTGCCGATCCTGCTATCG-TAACCATCGA-TCTG
18684101 A
904 A
* * *
18684102 TCCGATCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACTGAC-AAA--A---------CG
1 TCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGTGGGCG
* * *
18684155 AGCGGGCGGGCACTACG-TCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCAATAGGGTGGTA
66 GGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
18684219 GGTGGTTTTAGGCACATCTTCATATTTCTG--TGTCCAAATGCCATTTTTATGGCTTGTAAATTC
130 GGTGGGTTTAGGCACATCTTCATATTTCTGCATG-CC-AATGCCATTTTTATGGCTTGTAAATTC
* * * *
18684282 ATACAATGGTCCCTTCAGGCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCA
193 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * * *
18684347 TGATTTTTGAAACTTTTTGCGGTTC-GAGATTTTTTAAACTGTTTTCGGAAGGAGTTTTGGCCCC
258 TGATTTTTCAAAATTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCC
* * *
18684411 AAACTTCGTAGACTTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCG
322 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * * *
18684476 AGGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATAGCTACT
387 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
18684541 GGCAGCAAACGTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-ATGGTTTGATGAG
452 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAG
* *
18684605 GGATAGGGGGCAAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACA-----C
516 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * *
18684665 --CCCCCC-GATCGTCGGAACCCCAATGCCGCCGGCCAGGTTCTCCGGTGATGCTTCGGTGATGT
581 GGCCCCCCTGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGG
* * *
18684727 TGCCCCGACGAAGAAAAATGCAACACCAGCACATGCCCGAGCCCAGCATGCGCTGCCGGCATCCC
646 TGCCCCGACGAAGAAAAATGCAACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAGCAACCC
* ** * * * * *
18684792 TCGGTCTGATCCAATCTTAGACTAGGAATGAGCTCCGTAAGCTTAGACTGGGAATGAACTCCCTA
711 TCAGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * *
18684857 TGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGTCTGCTAGAGGGGCGGGATGCACAA
776 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAA
* ** * *
18684922 GCCAGGGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCATCGGT-TGGG
841 GCCAGGGATCGACTCGGTCCCCCTCTGCGTGCTGCCGATCCTGCTATCGTAACCATCGATCT-GA
* * * ** *
18684986 TCCGATCTTAGACCAAGAATGAACTCCGTAT-CCTTAAGCCAACCGATGAAATGAGTAGGTGGGT
1 TCCGATCTTAGACTAGGAATGAACTCCGTATGCC-TAAGCCAACCGACGAAATGAGCGGGTGGGC
* * * * *
18685050 GGGCGGGCGGGCACCACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGAAAGGGTGGTA
65 GGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
18685115 CGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACCATTTTTATGGCTTGTAAATTCAT
130 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
18685180 ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCTAGACGACTCGTTTTCTATTTTTCATG
195 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * * * *
18685245 ATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAA
260 ATTTTTCAAAATTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAA
18685310 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
325 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
18685375 TGTACATGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
390 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
18685440 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
455 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* ** **
18685505 AGGGGGCCAATGTAAGGGCCAAGTACCAGCGTCCATTACACATCATGTGCGCACACCCCCCCGGC
520 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGC
* * * *
18685570 CCCCCTGATCGCCGGAACCCCAATGTCGCCGGTTAGGTTCTTCGGCGATG-TTCGGCGTTGGTGC
584 CCCCCTGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGGTGC
* *
18685634 CCCGACGAAGAAAAATGCAACACCAGCACATGCCCGAGCCCAGCAAGTGCTG-CAGCAACCCTCG
649 CCCGACGAAGAAAAATGCAACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAGCAACCCTCA
* *
18685698 GTCCAATCTGATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
714 GTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* *
18685763 CTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCC
779 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCC
* * * *
18685828 AGGGATCGACT-GGTCCCCCTCTGTGTGCTGCTGATCCTGCTATCGTAACCTTCGATCTGT
844 AGGGATCGACTCGGTCCCCCTCTGCGTGCTGCCGATCCTGCTATCGTAACCATCGATCTGA
* *
18685888 TCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCG
1 TCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGTGGGCG
* *
18685953 GGCTGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAG
66 GGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
18686018 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
131 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
18686083 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
196 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* ** * *
18686148 TTTTTCAAAATTTTTACGGTTCGGGACATTTTAAAATTTTTTCGAAAGGATTTTTGGCTCCAAAC
261 TTTTTCAAAATTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC
*
18686213 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACCAAAAAATTCAGCTAAAAACTCGAAGT
326 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
18686278 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGCCA
391 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
18686343 GCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
456 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
18686408 -GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACGCCTCCCGGCCC
521 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
** ** * * * * * *
18686472 CCCCAATCGTTGGAACCGCAATGCCGTCAGTCAAGTTCTCCGGCGATGCTCCGGAGATGGTGCCC
586 CCCTGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGGTGCCC
* * ** * *
18686537 CGATGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGTATG-GACTGCC-GCAACCCTCAG
651 CGACGAAGAAAAATGCAACACCAGCACATGCCCGAGCCCAGCATGTG-CTGCCAGCAACCCTCAG
*
18686600 TCCAGTCCGATCTTAGACTGGGAATGAACTCTC-TATGCTTAGACTGGGAATGAACTCCGT
715 TCCAATCCGATCTTAGACTGGGAATGAACTC-CGTATGCTTAGACTGGGAATGAACTCCGT
18686660 GCGGGCGGAC
Statistics
Matches: 2265, Mismatches: 247, Indels: 95
0.87 0.09 0.04
Matches are distributed among these distances:
882 100 0.04
883 131 0.06
884 76 0.03
885 5 0.00
887 1 0.00
889 2 0.00
890 5 0.00
891 440 0.19
892 12 0.01
896 459 0.20
897 4 0.00
898 2 0.00
900 48 0.02
901 167 0.07
902 525 0.23
903 141 0.06
904 109 0.05
905 38 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (904 bp):
TCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGTGGGCG
GGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
TTTTTCAAAATTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
CCCTGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGGTGCCC
CGACGAAGAAAAATGCAACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAGCAACCCTCAGT
CCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCAG
GGATCGACTCGGTCCCCCTCTGCGTGCTGCCGATCCTGCTATCGTAACCATCGATCTGA
Found at i:18687387 original size:26 final size:26
Alignment explanation
Indices: 18687336--18687388 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18687326 CCGATCTGAT
*
18687336 CTTAGACTGGGAACGAACTTCATATG
1 CTTAGACTGGGAACGAACTCCATATG
* *
18687362 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCATATG
18687388 C
1 C
18687389 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:18690028 original size:26 final size:26
Alignment explanation
Indices: 18689992--18690042 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18689982 TAAGTCCAAT
*
18689992 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18690018 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
18690043 TCCTAAGTCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18693621 original size:26 final size:26
Alignment explanation
Indices: 18693585--18693637 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18693575 TCGGTCCGAT
*
18693585 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18693611 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18693637 C
1 C
18693638 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18694504 original size:26 final size:26
Alignment explanation
Indices: 18694468--18694520 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18694458 CCAATCTGAT
18694468 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18694494 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18694520 C
1 C
18694521 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18695829 original size:900 final size:898
Alignment explanation
Indices: 18686672--18707922 Score: 25157
Period size: 900 Copynumber: 23.8 Consensus size: 898
18686662 GGGCGGACGG
* * * *
18686672 GCGGGCGGGTGGGCGGGCATTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGG
1 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
*
18686737 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
66 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* * *
18686802 ATTCATACGATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTT
131 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * *
18686867 TTCACGATTTTCAAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
196 TTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * * * * *
18686932 CCCAAACTTGGTAGACATGATCCTTGTA-TTTTGTTGGCGTGGATAATAAAATTCAGCCAAAAAC
261 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
18686996 TCAAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCC
326 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * * *
18687061 ACTGGCAGCAAACCTGTGAAATCTCGAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATG
391 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
** *
18687126 AGGGATAGGTTGCCAATATAAGGGCCAAGTACCAGCACCCATAGCACATCATGTGCGCACACCCC
456 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * *
18687191 CCGGCCCCCCGATCGCCAGAACCCCAATGCCGTCAGTCAGGTTCTCCGGCGATGCTCCGGCAATG
521 CCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATG
* ** * *
18687256 GTGCCCCGGCGAAGAAAAATATGGCTCCAGCACACGCGC-GAGCCCAGCATGTGCTGCCGCAACC
586 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC-CTGAGCCCAGCATGTGCTGCCGCAACC
* * * * *
18687320 CTCGGTCCGATCTGATCTTAGACTGGGAACGAACTTCATATGCTTAGACTGGGAATGAACTCCGT
650 CTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * *
18687385 ATGCCTAAGTCAACTCACGAAACGAGCGTGCAGGCGCTTAGCCGGCCAGAGGGGCGGGATGCGCA
715 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
*** * * * * * * *
18687450 AGTTAGGGATCGACCGAGTCCCCTTCTGCGTGCTGCCTATCCTGCTACCGCAACCCTCAGTCCGA
780 AGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGG
* * *
18687515 TCGGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAATCGA
845 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * *
18687569 GCAGGCGGGCAGACGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGTGCAAGCCGTGGATCGA
1 GCGGGC-GG--G-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * *
18687634 TAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCATGCTAATACCATTTTTATGGCTT
62 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* *
18687699 TTAAATTCATACAATGGTCCCTTCAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
127 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
18687764 ATTTTTAATGATTTTCAAAACTTTTTGTGGTTCCG-GATTTTTTAAAATTTCTTT-GGAAGGAGT
192 ATTTTTCATGATTTTCGAAACTTTTTGCGGTT-CGAGATTTTTTAAAATTT-TTTCGGAAGGAGT
** *
18687827 TTTGGCCCCAAACTTTTTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCT
255 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
*
18687892 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTA
320 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * * *
18687957 ATAGCTACTGGCAGCAAACTTGTAAAATCTCAAATGTTCTTTAAGGCGGTGTGAGTTCTCAAGGT
385 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
18688022 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCA
450 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * **
18688087 CAACCCCCACGGCCCCCCGATCGTCGGAATCCCAAT-CCTGTCGGTCAGGTTCTCCGGTGATGCT
515 C-ACCCCC-CGGCCCCCCGATCGCCGGAACCCCAATGCC-GTCGGTCAGGTTCTCCGACGATGCT
* * * * * * *
18688151 CCGACGATGGGGCCCTGACGAAGAAAAATACGGCACCAGCACAGGCCCGAACCCAGCATGTGCTA
577 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTG
* *
18688216 TCGCAA--C-C---C---TC-GA--TT---C-------G-A-TCCG-AT-CTTAGACTGAGAATG
642 CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * * * *
18688255 AACTCTGTATGCCTAAATCAACCCACGAAACAAGCGTGCAGGCGCTCAACCGGCCAGAGGGCCAG
707 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * **
18688320 GATGCGCAAGCAGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCTGCAACCCT
772 GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCT
* * * *
18688385 CTGTTCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAATCGACGAAACGAGCA
837 CAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A
* * * *
18688450 GGCGGGCGGGCGGGCGGGCACTACGTCGGCTAGAGAGACGAGATGCGCAAGGCGTGGATCGATAG
1 -GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * *
18688515 GGTGGTAGGAGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTA
65 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
*
18688580 AATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
130 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * *
18688645 TTTCACGA-TTTCGAAAACTTTTTGTGGTTCGAGATTTTTTCAAATTTTTTCGGAAGGATTTTTG
195 TTTCATGATTTTCG-AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * *
18688709 GCCCCAAACTTGGTAGACGTGATTCTTGTCTTTTTGTTGGCATGCACAAAAACATTCAGCTAAAA
259 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
18688774 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
324 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
18688839 CTATTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
389 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
*
18688904 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACC
454 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* *
18688969 CCCCGGCCCCCCAATCGCCGGAACCCCAATGCCGTTGGTCAGGTTCTCCGACGATGCTCCGACGA
519 CCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGA
* * * * * * * *
18689034 TGGTGCCCCGACGAAGAAAAATGCGACAGCAGCACATTCCTAAGCCTAGTATTTGCTGTCGCAA-
584 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAAC
18689098 CC-C--TC--G---G----T---CT--G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCG
649 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * **
18689138 TATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCACTCAACCGGCCAGAGGGGCTAGATGCGC
714 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * ** * * * *
18689203 AAGTCGGGGATCGGTCGGGTCCCCCTCTGCATGCTATCGATCCTACTGCCCCAACCCTCATTTCG
779 AAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCG
* * *
18689268 ATCAGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
844 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
*
18689323 GCGGGCGGGAGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
1 GCGGGC----GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *
18689388 TAGAGTGGTAGGTGGGTTAAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGTTT
62 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* * * * *
18689453 GTAAATTCATACAATGGTCCATTAAGCCTTCACGTCAAGTTTCATGGAAAGACGACTCATTTTTT
127 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
18689518 ATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
192 ATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * *
18689583 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAACATTCTGCTAA
257 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
*
18689648 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCGATTTCAGACACTTTAAT
322 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
18689713 GG-TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
387 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
18689777 GATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCG-ACATCATGTGCGCACA
452 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * *
18689841 CCCCCCCGGCCCCCCCGATCGTCGGAACCTCAAGGCCGCCGGTCAGGTTCTCCGGCGATGCTCCT
517 -CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-
* ** * ** * *
18689906 G-TGATGGTGCCCCGACGAAGAAAAATAAGGCGCCAGCACATGCCCAAGCCTAGCATGTGCTGTC
579 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCC
* * ** *
18689970 GAAACCCTCGGT-TAAGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGA
644 GCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * * *
18690034 ACTCCGTATTCCTAAGTCCAA-ACACGAAACGAGCGTGCGGGCGCTCAGCTGACCAGAGAGGCAG
708 ACTCCGTATGCCTAAGT-CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * * * *
18690098 GATGCGCAAGCCGAGGATCGACCTGGTCCCCCTCTGCATGCTGCCAATCCTGCTACCGCAACCCT
772 GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCT
* * * * *
18690163 CAGTCTGGTCTAATCTCAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTGACGAAACGA
837 CAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * *
18690225 GCGGGCGGGCGGGCGGGCGGGCACTATGCCGGCCAAAGAGACAGGATGCGCAAGCCGTGGATCGA
1 ----GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
18690290 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTCTGGCTT
62 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
*
18690355 GCAAATTCATACAATGGTCCCTTAAGCC-TCGACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
127 GTAAATTCATACAATGGTCCCTTAAGCCTTC-ACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * *
18690419 TATTTTTTACGACTTTCGAAACTTTTTGTGGTTCGAGATTTTTTAAAA-TTTTTCGGAAGGAATT
191 TATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTT
** * * *
18690483 TTGTTCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTTAGCTA
256 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * *
18690548 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCGCAATTTCAGACACATTAA
321 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
18690613 TGGCTACTGGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
386 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
18690678 TGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGAAC
451 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * * *
18690743 A-CCCCCGG--TCCCGATCGTCGGAACCCCAATGCAGTCGGTCAAGTTCTCCGACGATGCTCTGG
516 ACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA
*** * * **
18690805 CGATGGTGCAGTGGCGAAGAAAAATGCGGCACCAGAACATGCCTGAGCCCAATATGTGCTGCTC-
581 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGC-CG
* ** * *
18690869 TAACCCTCGGTCCAGTCTGATCTTAGACTGGCAATGAACTCCGTATGCTTAGACTAGGAATGAAC
645 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * * *
18690934 TCCTTATTCCTAAGTCAACCCGCGAAACGAGCGTGCGGGTGGTAAGCCGGCCAGA-GGG-GGGAT
710 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * *
18690997 GCGCAAGCCGGGGATCAGCCGGGTCCTCCTCTCCGTGCTGCCTATCCTGCTACCACAACCCTCAG
775 GCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAG
* * * ** *
18691062 TCTGGTCAGATCTTAGAGTGGGAATGAACTCCGTATGCCTAAGCCAATAGACGAAACAA
840 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* **
18691121 GCGGGCGGGCGGGCAGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATTAA
1 GCGGGCGGGC-GG--G-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
18691186 TAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTT
62 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
** * *
18691251 CCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCATTTTCT
127 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
** * * * *
18691316 ATTTTTCACAATTTTCGAAACGTTTTGCGGTTTGAGATTTTTTTAAATTTTTTCAGAAGGAGTTT
192 ATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * *
18691381 TGGCCCAAAACTTGGTAGGCATGATCCTTGTATTTTT-TCTGGCATGCACAAAAAAATTCAGCTA
257 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT-TGGCATGCACAAAAAAATTCAGCTA
* * *
18691445 AAAACTTGAAGTGTACAAGATATTGTTACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
321 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
18691510 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGCTT
386 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
18691575 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTAT
451 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * * *
18691640 ACCCCCAGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTACGG
516 ACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA
* * * * * * **
18691705 GGATGGTACCCCGACGAAGAAAAATGGGGCACCAGCACATGCCCGAGCCCAACATGTGCTACCAT
581 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGC
* * * * * * *
18691770 AACCCTCGGTCCGGTTTGATCCTAGACTGGGAATGAACTCTGTAAGCTGAGACTGGGAATAAACT
646 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * *
18691835 CCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAGTCAGCCAGAGGGGTGGGATG
711 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * ** * * * *
18691900 CGCAAGCCGAGGATCGACCGAGTCCCCCTATGCGTGCTATCGGTCCTACTCCCAAAACCCTC-GA
776 CGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAG-
* * *
18691964 TTCGGTCTGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGA
840 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* *
18692023 GCGGGCGGGTGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
1 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
18692088 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGTTTGTAA
66 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* *
18692153 ATACATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTT
131 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * *
18692218 TTCAGGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGC
196 TTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * * * *
18692283 CCCAAA-TGTGGTAGACCTGATCCTTGTATTTTTATTGGTATGCACAAAAAACTTCCGCTAAAAA
261 CCCAAACT-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * * *
18692347 CTCAAAGTGTACAA-ATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAAACACTTTAATTGC
325 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* ** ** *
18692411 TAATGGCTCCAATGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGAT
390 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * * *
18692476 TAGGGATAGGGTGCCAATATAAGGGCCAAGTTCCAGCGCCCATCGCACATCATGTGCACACACCC
455 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC
* ** *
18692541 TCCCCGACCCCTCCGATCGCTAGAACCCCAATGCCGCCGGTCAGG---T-------T-CTCCGAC
519 -CCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGAC
* * * *
18692595 GATGGTGCCCCGATGAAGAAAAATGTGGCATCAGCACATG-CTCGAGCCTAGCATGTGCTGCCGC
582 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGC
* * * *
18692659 AACCCTCGGT-TCGATCCGATCATAGACTGGGAATGAACTCCGTATGCTTGGACTGGGAATGAAC
646 AACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * *
18692723 TCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGACCAGAGGGGTGGGAT
710 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* ** ** * * * ** * *
18692788 GAGCAAATCGGGGATCGATCGGGTCCCCTTCTACATGCTATCGATCTTGCTGCCACAACCCTCGG
775 GCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAG
** * *
18692853 TCCAATCTGATCATAGACTGGGAATGAAATCCGTATGCCTAAGCCAACCGACGAAACGAGTTGGA
840 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC------GA
* * * *
18692918 GGGCGGGTGGGCGGGTGGGCACTATGCCGGCCAGAGAGACGGGATGGGCAAGCCGTGGATCGATA
1 --GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * *
18692983 GGGTGGTAGGTGGGTTTATGCACATCTTCATATTTCTGTGTTCCAATGCCATTTTTATGGCTTGT
64 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
*
18693048 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTAT
129 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * * * *
18693113 TTTTCATGATTTTTC-AAACTTTTTACGATGCGGGATTTTTTAAAATTATTTT-AGAAGGATTTT
194 TTTTCATGA-TTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATT-TTTTCGGAAGGAGTTT
* * *
18693176 TGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTGTTGGCATGCACAAAAAACTTTAGCTAA
257 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
*
18693241 AAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAA-TGGTCCCCATTTCAGACACTTTAA
322 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT-GTCCCCATTTCAGACACTTTAA
* * *
18693305 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTATGAGTTCTCGATGTT
386 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * *
18693370 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCTTGTGTAG-A
451 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG-CGCA
* *
18693434 CACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCG-CTGATGCTCC
515 CACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC-GATGCTCC
* * ** * *
18693498 GACGATGTTGCCCTGGTGAAGAAAAATGCGACACCAGCACATG-CTCGAGCCCAGCATGTGCTGT
579 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGC
* * *
18693562 CGCAACCCTTGGT-TCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATG
643 CGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* *
18693626 AACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGG
707 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
** * *
18693691 GATGCGTTAGCCGGGGATCGGCTGGGTCCCCCTCTGCATGCT---G---CTG-T-----AACCCT
772 GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCT
*** * *
18693744 C-GATCTATTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAA
837 CAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
*
18693806 GCGGGCGGGTGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
1 GCGGGC----GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * *
18693871 TAGGGTGGTAGGTGCGTTTAGGCA-ACTCTTCATATTTTTGTGTACCAATGCCATTTTTATGGCT
62 TAGGGTGGTAGGTGGGTTTAGGCACA-TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
18693935 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
126 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * * * * *
18694000 TATTTTTCACGATTTTGGAAGCATTTTGCGGTTCAAGATTTTTTAAAATTTTGTCGAAAGGATTT
191 TATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * * *
18694065 TTGGCCCCAAACTTGGTAAATGTGATCCTTTTATTTTTGTTGGCATGCATAAAAAAATTCAGCTA
256 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
18694130 AAAACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAA
321 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
18694195 TTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTCTCGAGGTT
386 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
18694260 TGATGA-GGATAAGGGGCCAATATAAGGGCCAAGTACCGGCACCCATCGCACATCATGTGCGCAC
451 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
** ** * *
18694324 A-------GCCCCTCCGATCGTAGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGGTCCG
516 ACCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
* ** * * * *
18694382 ACGATGGTACCCCGGTGAAGAAAAATCCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTG
580 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCG
* ***
18694447 CAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
645 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * **
18694512 TCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGAGCGCTCAGTCGGCCAGAGGGGTAGGAT
710 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * * * * * * *
18694577 GCACAAGCCGGGGATTGGTCGGGTCCCCTTCTGCGGGTTGCTGATCTTGCTACCCCAACCCTC-G
775 GCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAG
* * ** *
18694641 AT-TGGATCTGATGTTAGACTTTGAATGAACTCCGTATGCCTAAGCCAAACGACGAAACGA
840 -TCCGG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * * * * * *
18694701 ----GTGGGCGGGTGGGTATTACGTCAGCCAGAGTGACGGGATGCGCAAGCCATGGATCGATTGG
1 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * * *
18694762 GTGGTAGGTAGGTTTAGGCACATCATCATATTACTGTGTGCCAATGCCATTTTTATGGCTTGTAA
66 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* * *
18694827 ATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAATACGACTCGTTTTCAATTT
131 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * * *
18694892 TTCACGATTTTCAAAACTTTTGGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGCGTTTTGGC
196 TTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * *
18694957 CCCTAACATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
261 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
18695022 TTGAAGTGTACAAGATTTTGTGACCAATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
326 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
18695087 ACTAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
391 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
18695152 ATGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCC
456 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
* * * * * *
18695217 CCCGACCCCCCTGATCGCCGGAACCCCAATGTCATTGGTCCGGTTCTCCGACGATGCTCCGATGA
520 CCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGA
** * * **
18695282 TGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGTCCAGCATGTGTTAACGCAAC
584 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAAC
* * * * * * *
18695347 CCTCCGTCTAGTCTGATCTTATACGGGGAATGAACTCCATATGCTTAGACAGGTAATGAACTCCG
649 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * *
18695412 TATGCCTAAGTCAATCCACGAAACGAGCGTACGGGCACTTAGCCGGCCAGAGGGGCAGGATGCGC
714 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * * *
18695477 AAGCCGGGGATTGGCCAGGTCCCCTTCTGTGTTCTGCCGATCCTGCTACCACAACCCTCAGTCCG
779 AAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCG
** *
18695542 GTCCCATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGA
844 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
** * * ** *
18695597 GCGGGCGAACGGACGGGCACTACGCCAGCCAGAGAGACGGGATGAACAAGTCGTGGATCGATAGG
1 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
** *
18695662 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGCAA
66 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* * *
18695727 ATTCATACATTGGTCCCCTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTT
131 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * *
18695792 TTCATGATTTTCGAAACTTTTTGCTGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGATTTGGC
196 TTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * *
18695857 CACAAACTTGGTAGACGTGATCCTTGTATTTTGGTTGGCATGCCCAAAAAAATTCAGCTAAAAAC
261 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
18695922 TCGAAGTGTACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTGTAATGGCT
326 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * * *
18695987 ACTGGCAGCAAGCCTGTAAAATCTCAAATGCTTTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATG
391 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * *
18696052 AGGGATAGGGGGCTAATATAAGGGCTAAGTACCAGGACCAATCGCACATCATGTGCGCACACCCA
456 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA--CA
* * *
18696117 CCCCCTCCGGGCCCCCCGATCGTCGGAATCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCC
517 -CCCC-CC-GGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC
*
18696182 GACGA----------A-GAA-AAAAAT--GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
579 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCC
* * * *
18696233 GTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGAAATGAA
644 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * **
18696298 CTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGTCCAGAGGGGCGAAA
709 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * **
18696363 TGCGCAAGCCGGGGATC-GACGGG-CCCCCTCTGCGTGCTACCGTTCCTGCTGCCACAACCCTTG
774 TGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCA
** * * * * * * *
18696426 GTTTGATCTGATCTTATACTGGAAATGAACTCTGTATACCTAAGCCAACTGACGAAATGA
839 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
** * * * * * *
18696486 ATGGACGGGCGGGCGGGCACTATGCCGACCAGAAAGACAGGATGCGCAAGCCGCGGATCGATAGG
1 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
18696551 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTTCCAATGCCATTTTTATGGCTTGTAA
66 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
*
18696616 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTT
131 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * *
18696681 TTCATAATTTTTGAAACATTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
196 TTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* **
18696746 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAACTTTCAGCTAAAAAC
261 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
18696811 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATGGCT
326 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * *
18696876 ACTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATG
391 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
*
18696941 AGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
456 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * * * * *
18697006 CTGGCCCTCCCAATCGCCGGAACCCCAATGCCGCCGATCAAGTTCTCCGGCGTTGCTCCGACAAT
521 CCGGCCC-CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGAT
** *
18697071 CATGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACC
585 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACC
* * * * * * *
18697136 CTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGCAATAAACTCTG-
650 CTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* ** * * * * **
18697200 ATGCCTAAGTCACCCCACGAAACGAGCGTGCAAGCGTTCAGCCGGCTAGAGGGGCAGCATGCATA
715 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
** * * * * * *
18697265 AGTTGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCATGCTGTCGCAACCCTCGGTCTGG
780 AGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGG
* *
18697330 TCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGA
845 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * * *
18697384 --------ACGGGTGGGTACTACGCCGGCCAGAGAAACAGGATACGCAAGCCGTGGATCGATAGG
1 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * *
18697441 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTATATC-TGCCAATGCCATTTTTATGGCTTCTA
66 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCGTGCCAATGCCATTTTTATGGCTTGTA
* *
18697505 AATTCATACAATGGTCCCCTAAAGCCTTCACGTGAAGTTTCATGGCAAGACCACTCGTTTTCTAT
130 AATTCATACAATGGT-CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * ** *
18697570 TTTTTACGATTTTTGAAACTTTTTATGGTTC-AGGATTTTTTAAAATTTTTTTGGAAGGAGTTTT
194 TTTTCATGATTTTCGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * * * *
18697634 GTCCGCAAACTTGGTAGACGTGATCCTTG-AATTTTGTTGGCGTGCACAAAATAATTCAGCTAAA
258 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* *
18697698 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCGATTTCAGACACTTTAATG
323 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * * *
18697763 GCAATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGCTTTG
388 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * * * * *
18697828 ACGAGGGATAGGGGGCCACTATAAGGGCTAAGTACCAGCACCCATCACACATTATGTGCACACAC
453 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * *
18697893 CCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAAG-T-T----C--T-CT--GACA
518 CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACG
* *
18697947 ATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG-AA
583 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAA
* **
18698011 ACC-C--TC--G---G---TT----T--G---G---TCCGTATGCTTAGACTGGGAATGAACTTT
648 CCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * * * * * * *
18698053 GTATGCCTAAGTCAACCCACGAAACAAGCATACAGGCACTCAGCCAGCTAGAAGGGCTGGATGCA
713 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
** ** *
18698118 CAAGATGGGGAT-GGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTATCGCAACCCTCAGTC
778 CAAGCCGGGGATCGG-CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTC
* * *
18698182 TGGTCTGATCTTAGACTGGGAATG-ACTCCGTATGCCTATGCCAACAGACGAAACGA
842 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * *
18698238 GCAGACGGGCGGGCGGGCACTACGTCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAG
1 GCGGGCGGGCGGGCGGGCACTACG-CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
*
18698303 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGAA
65 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
* * * *
18698368 AATTCATATAACGGTCCCTTAAGCCTTCACATGAAGTTTCACGGCAAGACGACTCGTTTTCTATT
130 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * *
18698433 TTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGG
195 TTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
*
18698498 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAA
260 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
18698563 CTCGAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGAGTCCCCATTTCAGACACTTTAATGGC
325 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
18698628 TACTGGTAGCAAACCTGTAAAATCTTAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGAT
390 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
** * * * *
18698693 GAGAAATAGAGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCCTCTGCGCACACCC
455 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * ** * * * *
18698758 CCCGACCCCACCGATCGTCGGAACCCCAATGCCACCGATCAGGTTCTCCGACAATGCTCTGGCGA
520 CCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGA
* * * **
18698823 TGGTGCCCCGGCAAAGAGAAATGC-G-----G----TG-CT--G-CCA-CAACT-CT--CG--A-
584 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAAC
* * * * *
18698867 --TC---C-AGTCCGATCTTAGACTGTGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCA
649 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * *
18698926 TATGCCTAAGTCCACCCATGAAACGAGCGTGTGGGCG-TATAGCCGGCCAGAGGGGCGGGATACG
714 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT-CAGCCGGCCAGAGGGGCGGGATGCG
* * * * * ** * *
18698990 CAAGTCAGGGATCAGCCAGGTCCCCCTCTACGCACTGCCGATCTTGTTGCCACAACCCTC-GATC
778 CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAG-TC
* **
18699054 CGGTCTGATCTTAGATTGGGAATGAACTCTATATGCCTAAGCCAACCGACGAAACGA
842 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * ** * * * *
18699111 --------GCGGGCAGGTACTACATCAGCCAGAGAGACGAGATGCGCGACCCGTGGATCGATAGG
1 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * * *
18699168 GTGGTAGGTGGGTTTAGGCACATCTTTATATTTTTACGTGCCAATGCCATTTTTATGGCTTGAAA
66 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* *
18699233 ATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTT
131 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * *
18699298 TTCACGATTTTTGAAACTTTTTCCGGTTTGAGATTTTTTAAAATTTTTTC-GAACGGAGTTTTGG
196 TTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAA-GGAGTTTTGG
* *
18699362 CCCCAAACTTGGTAGACGTGATCATTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAA
260 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
18699427 GTC-AATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG-CCCGATTTCAGACACTTTAATGG
325 CTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
*
18699490 CTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
389 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
** *
18699555 TGAGGGATAGGGGGCCAATATAAAAGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACC
454 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * * *
18699620 CCCTGGCCCCCCCGATCGCTGGAACCCCAATGTCGTCGGTTAGGTTCTCCGGCCATGCTCCGACG
519 CCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACG
* * * * *
18699685 ATGGTGCCCCGACGAAGAAAAATGCGGTACCAGCACATG-CTCGAGCCAAGCATGTGCTACTGTA
583 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCA
* * * * * * *
18699749 ACCCTCAGTCCGGTCCGATCTTAGACTGGGAGTGCACTCCATATGCTTAGACTAGGAATGAACTC
647 ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * **
18699814 CGTATACCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGTACGGGATGC
712 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * ** *
18699879 ACAAGCCGGGGATTGGCCGGGTCCCCCTTTGTATGCTGTCGATCCTGCTGCCACAACCCTC-GAT
777 GCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAG-T
* *
18699943 CAGGTCCGATCTTAGACTGGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
841 CCGGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * *
18700002 GCGGGCGGGCGGACAGGGCGA-TACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
1 GCGGGCGGGCGGGC-GGGC-ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * * * * *
18700066 GGGTGGTAGGTGGGTTTAGACACATCTTCATATTTTTGTGTGCTAATTCCCTTTTTATGGCTTGT
64 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
*
18700131 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGACGACTCGTTTTCTAT
129 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * * * *
18700196 TTTTC-TAGATTTTTGAAACTTTTTACAGCTC-AGGATTTTTTAAAATTTTTTCGAAAGGGGTTT
194 TTTTCAT-GATTTTCGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTT
*
18700259 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAA
257 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * * * **
18700324 AAATTCAAAGTGTACAAGATTTTGTGACCATTTCAAAAAAATGTCCAAATTTCAGACACTTTAAT
322 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
18700389 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTT
387 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
18700454 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA
452 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * * * *
18700519 CCCCCTGG-CCCCCTATCGTCGAAACCCCAATGTCGTCGGTTAGGTTCTCTGACGATGCTCCGGC
517 CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGAC
* * * *
18700583 AATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATG-CTCGAGCCAAGCATGTGCTACCGC
582 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGC
* * *
18700647 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACT
646 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * ** *
18700712 CTGTATGCCTAAGTC-ACCCTAGGAAACGAGTGTGCGGGCGCTCAGCCAGCCAGAGGTACGTGAT
711 CCGTATGCCTAAGTCAACCC-ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * * *
18700776 GCGCAAGCAGGGGATCGACCGGGTTCCCCTCTGCATGCTTCAGATCCTGCTGCCACAACCCTC-G
775 GCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAG
* * * * *
18700840 ATTCGGTCCGATCTTAGGCTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGA
840 -TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * *
18700900 GCGGGCAGGCAGGCAGACGGACGAC-ACGTCGGCCAGAGAGACGGGATGCGGAAGCCGTGGATCG
1 GCGGGCGGGC-GG--G-CGGGC-ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *
18700964 ATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCT
61 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
* * *
18701029 TGTAAATTCATACAATGGTCCCTGAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTT
126 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * *** * * *
18701094 TATTTTTCATAATTTTTGAAACGTTTTGCACATCGGGATTTTTGAAAATTTTTTC-GAAGG-GTG
191 TATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTT
* *
18701157 TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTCAGCTA
256 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
18701222 AAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTAA
321 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
18701287 TGGCTACTGGCAGCACACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
386 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
** ** *
18701352 TGATGAGGGATAAAGGGCCAATATAAGGGATAAGTACCAGCACCCATCGCACATCATGTACGCAC
451 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * *
18701417 ACCCCCTGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCG
516 ACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
* * * * *
18701482 GCGATGGTGCCCCGGCAAAGAAAAATGTGACACCAGCACATGGCC-GAGCCCAGCATGTGCTGCC
580 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT-GCCTGAGCCCAGCATGTGCTGCC
* * * *
18701546 TCAACCCTCGGTCCGGT-TCGATCTTAGACTGGGAATAAACTCTGTATGCTTAGACTGGGAATGA
644 GCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * ** *
18701610 ACTCCATATGCCTAAGTCAACACACGAAACGAGTGTGCGGGTGCTCAGCCAACCAGAGGGGCAGG
708 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * ** * * * * *
18701675 ATGCACAAGTC-GGGATCGATCGGGTCCCCTTC-GACGCGCTGCCGATTCTGTTGCCGCAACCCT
773 ATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTG-CGTGCTGCCGATCCTGCTGCCACAACCCT
* * * * ** *
18701738 C-GATCTGGTGTGATCTTAGATTGGGAATGAGCTCAATATGCCTAAGCCAACCGATGAAACGA
837 CAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
*
18701800 GCGGGCGGGCAGGCGGGCGA-TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
1 GCGGGCGGGCGGGCGGGC-ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
*
18701864 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
65 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
* * *
18701929 AATTCATACAATGGTCCCTTAAGCCTTCACGTGGAGTTTCATGGCAAGACGACTCATTTTCAATT
130 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * * * * * *
18701994 TTTAACGATTTTTGAAACATTTTGTGGTTTGGGATTTTTCAAAATTTTTTCGAAAGGAGTTTTGG
195 TTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* *
18702059 CCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAACAAAATTCAGCTAAAAA
260 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * * *
18702124 CTTGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTCATGGC
325 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* *
18702189 TATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
390 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * *
18702254 GAGGGATAGGGGACCAATATAAGGGCCAACTACCAGCACCCATTGCTCATCATGTGCGCACACCC
455 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * *
18702319 CCCGGCCACCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCCGGCGA
520 CCCGGCC-CCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGA
* * * * *
18702384 TGGTGCCCCGGCGAAGAAAATTGTGGCACCAGCACATGCCCGAGCCCAGCAAGTGCTGCCGCAAC
584 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAAC
* * *
18702449 CCTCGGTGC-GGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTCGGAATGAACTCT
649 CCTCGGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * * *
18702513 GTATGCCTAAGTTAACCCACGAAAGGAGCGTGCGGGTGCTCAGTCGGCTAGAGGGGTGGGATGCG
713 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * ** * * ** *
18702578 TAAGCCGGGGATGGGCCGGGTCCCCCTCTGTGTGCTGTTGATCCTACTACTGTC-ATCCT-AGGT
778 CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGC-CACAACCCTCA-GT
** ** * ** *
18702641 TTGGTCCAATCTTACACTGGGAAAAAACTCCGTATGCCTAAGCCAACCGATGAAACGA
841 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * * * * *
18702699 GTGGGCGGGCAGGCGGGCGGGCACTACGTCGGCTAGAGAGACGGGGTGAGCAAACCGTGAATCGG
1 ----GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * * *
18702764 TAAGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCAGTGCCATTTTTATGGCTT
62 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* * * * *
18702829 GTAAATTCATACAATGGTCCCTTGACCCATCACTTGAAGTTTCATGGCAAGATGACTCGTTTTC-
127 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
*
18702893 -----T-AT--TTTTC---A------------CGAGATTTTTTAAAATTTTTTCGAAAGGAGTTT
192 ATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* *
18702935 TGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTCAGCTAA
257 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
18703000 AAACTCGAAGCGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAAT
322 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
18703065 GGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
387 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
18703130 GATGAGGGATTGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATTGCACATCATGTGCGCACA
452 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * * * *
18703195 CCCCCTGCCCCCCCGATCGTCGGAACCCTAATGCAGTTGGTCAGGGTCTCCGACGATGCTCCGGC
517 CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGAC
** ** * ** *
18703260 GACAGTGCCTAGACGAAGAAAAATGCGGCACCAGCACATACCTGAGCCCAGCATGTGCTATCACA
582 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCA
** *
18703325 ACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAGCTC
647 ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * *
18703390 TGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGC
712 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * ** * *
18703455 GCAAGCTGGGGAACGGTTGGGT-CCCC-CTGCGTGTCCTGTCGATCCTGCTGCCACAACCCTCGG
777 GCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTG--CTGCCGATCCTGCTGCCACAACCCTCAG
** * * *
18703518 TCCGGTCCAATCTTAGACTGGTAATGAACTCCGTATGACTAAGCCAACCGATGAAACGA
840 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * *
18703577 GCGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGGTAGG
1 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
18703642 GTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
66 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* * *
18703707 ATTAATACAATGGACCCTGAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
131 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
** *** * * *
18703772 TTCATGATTCACGAAACTTTTAATGGTTCTG-GATTTTTTAAAAATTTTTTTGGTAGGATTTTTG
196 TTCATGATTTTCGAAACTTTTTGCGGTTC-GAGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTG
* *
18703836 GCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
259 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
** * *
18703901 AAACAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGG
324 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
*
18703966 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTCGAGGTTTGA
389 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
*
18704031 TGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACC
454 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * * *
18704095 CCCAGCCCCCCCGATCACCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCAACGA
519 CCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGA
* * *
18704160 TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGTAAC
584 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAAC
** * * *
18704225 CCTCGGTCCAGTCTGATATTAGACTGGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCT
649 CCTCGGTCTGGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * * * *
18704290 ATATGCGTAAGTCAACCCACGAAATGAGCGTGCAGGCTCCCAGCTGGCCAGAGGGGCGGGATGCG
713 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
** ** * * * * ** * *
18704355 CAAGCTAGGGATCGGTTGGGTCCCCCTTTGTGTGCTGCCAATCTTGCT-ATAGCAACCCTCGGTG
778 CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA-CAACCCTCAGTC
* * *
18704419 CGATCTGATCTAAGACTGGGAATGAACTCTGTATGCCTAAGCCGAA-CGACGAAACGA
842 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-AACCGACGAAACGA
* *
18704476 GCGGGTGGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
1 GCGGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * *
18704541 GGTGGTAGGTGGGTTTAGGCACATGTTCATATTTCTGCATGCCAATGCCATTTTTATGTCTTGTA
65 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
** * * *
18704606 AATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTAATGGCAAGACGACTCATTTTTTTAT
130 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-GTTTTCTAT
* * * * * * *
18704671 TTTTCATGATTTTTGAAACTTTTTACTGTTCGGGATTTTTTAAAAGTTTTTCGGAAAGTGTTTTG
194 TTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* ** *
18704736 ACCCCAAACTTGGTAGATATGATCCTTGTATTTTCGTTGGCATGCACAAAAAAATTCAGCTAAAA
259 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* * *
18704801 ACTCGAAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCTATTTGAGACACTTTAATGG
324 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* **
18704866 CTACTGGCAGCAAACCTGTAATATCTCAAATGCTCTTTAA-GGGGCATGAGTTCTCGAGGTTTGA
389 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* ** ** * * * ** *
18704930 TGAGGGATAGGGGGCCAATATAAGGGCCAAGCATAGGCGATGGTGCCCGGCGAAGA-AAAATACG
454 TGAGGGATAGGGGGCCAATATAAGGGCCAAG--TA--CCA--GCACCCATCGCACATCATGTGCG
* ** * ** ** * * *
18704994 -ACACCAACACATGCCCGAGCCCAGCAT-G-AGCTACCGTAA--CCTTCGGTCTAGTCTGATCTT
513 CACACC--CCCCGGCCC---CCC-G-ATCGCCGGAACCCCAATGCCGTCGGTC-AG---GTTCTC
* * * *
18705054 AGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGCATTCCCAAGTCATCCGATG
567 CGAC---G-ATG--CTCC-GA--C---GA-T-GG--TG--CCCCG-A---CGAAG--A----A--
* * ** * * * * * *
18705119 AAATGAGCGTCCGGACGCTCAGC-CA-GCCAGAGGGGCGGGATGCG-TAAGTCGGGGATCGACC-
602 AAAT----G--CGG-CAC-CAGCACATGCCTGA-GCCCAGCATGTGCT--G-C-CGCAAC--CCT
* ** ** * * *
18705180 GGGTCCTCCTCTGTATGCTGCCGATCCTGCTG-CTGAAACCCTCAGTATGGTCTGATCTTAGACT
652 CGGT-CTGGTCTG-AT-CT-TAGA--CTG-GGAATG-AA--CTCCGTA-----TG--CTTAGAC-
* * * *
18705244 GGGAATGAAGTTCGTATGCTTAGACTGGGAAGGAACTCCGTATTCCTAAGTCATCCCATGAAATG
699 -----T---G---G---G---A-A-T------GAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * *
18705309 AGCGTACGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGACCGGGTCCCCT
739 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCC
** ** ** * * *
18705374 TCTGTATTTTTTCGATCCTGCTGCTGA-AACCCTCAGTTCGGTCTAATCTTAGACTGGGAATGAA
804 TCTGCGTGCTGCCGATCCTGCTGC-CACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAA
*
18705438 CTCCGTATGCCTAAGCTAACCGAC-AAA--A
868 CTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * * * * **
18705466 -TGAGCGGGTGGGCGGGCACTACGCCAGCTAGAGAGACAGGATGCGGAAGAGGTGGATCGAT-GG
1 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * * *
18705529 CGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGGA
66 -GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
* * * * * * *
18705594 AATTCACACAATGGTTCCTTAAGCCTTCATGTGACGTTTCATGGTAAGATGAGTCGTTTTCTATT
130 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * *
18705659 TTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTAGAAAGGATTTTTGG
195 TTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * *
18705724 CCCCAAACTTGGTAGACAG-GATCC-TGAATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAA
260 CCCCAAACTTGGTAGAC-GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
18705787 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
324 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* ** * *
18705852 CTACTGGCAACAAAATTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTGGAGGTTTGA
389 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *
18705917 TGAGGAATAGGGGGCCAATATAAGGGCCATGTACCAGCATCCATCGCACATCATGTGCGCACACC
454 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * *
18705982 CCCCGGCCCCCCCGATCGTCGGAACGCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGCG
519 CCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACG
* * * * *
18706047 ATGGTGCCCCGATGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA
583 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAA
* *
18706112 CCCTCGGTCT-G---G---TT---C-------G-A---C-----CTTAGACTGGGAATAAACTCT
648 CCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* *
18706151 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCG
713 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* ** *** * *** * *
18706216 CATGCCGGGGATCCACCGGGAAACCCTCTGCATGCTGCCGATCCTGCTGCTGTAACCCTCGGTCT
778 CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCC
* *
18706281 GGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGA
843 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * * * *
18706337 -C---CGGACGGGCAGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCTGTGTATTGATAGG
1 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
18706398 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
66 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
*
18706463 ATTCATACAATGGTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
131 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * *
18706528 TTCATGA-TTTCTGAAACTTTTTACGGCTC-AGGATTTTTTAAAGTTTTTT-GGAAGGTGTTTTG
196 TTCATGATTTTC-GAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * *
18706590 GCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTTTTGGTATGCAC-AAAAAATTCAGCTAAAA
259 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
*
18706654 ACTAC-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATG
324 ACT-CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
18706718 GCTACTGGTAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
388 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
*
18706783 ATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
453 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * * * *
18706848 CCCCCGGCCCCCCCGATTGTCGGAACCCCAATGTCGTTGGTCAGGTTTTCC-AGCAATGCTCCGA
518 CCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA-CGATGCTCCGA
* * * * * *
18706912 CGATGGTGCTCCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAACCCAGCATGTGCTGCTGC
581 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGC
* * * * * *
18706977 AACCTTCGATTTGGTCCGATCCTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
646 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * * *
18707042 CCGTATGCCGAAGTCAATCCATGAAACGAACGTGCGGGCGCTCAGTCGGCCAGAGGGGCGAGATG
711 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* ** * ** * * **
18707107 CGTAAGTAGGGGATCGGTCGGGTCCCCCTCTATGTGCTGCGGATCCTGCTACTGCAACCCTCAGT
776 CGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGT
** * *
18707172 CCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGACAAAACGA
841 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * ** *
18707230 ACGGGCGGCCGGGCGGGCACTA-TACGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGG
1 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * * *
18707294 GTGGTAGGTGGGTTTGGGGACATCTTCATATTTCTGCATGCCAATGCCA-TTTTATGGCTTTTAA
66 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
18707358 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
131 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * * *
18707423 TTCACGATTTTTGAAACATTTTACGGTTC-AGGAATTTTTT-AAATTTTTTCGGATGAAGTTTTG
196 TTCATGATTTTCGAAACTTTTTGCGGTTCGA-G-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
** * * *
18707486 GATCTAAACTTGGTAGACGTGGTCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAA
259 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
18707551 ACTCAAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
324 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
18707616 CTACAGGCAGCAAACCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
389 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
18707681 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCACACACC
454 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * *
18707746 CACCCTGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGA
519 C-CCC-GG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA
* * * ** *
18707811 CGATGGTGCCCCGACGAAGAAAATTACGACAATAGCACATGCAC-GAGCCCAGCATGTGCTACCG
581 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC-CTGAGCCCAGCATGTGCTGCCG
*
18707875 CAACCCTTCGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
645 CAACCC-TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
18707923 CTAAGCCAAC
Statistics
Matches: 17595, Mismatches: 2229, Indels: 1058
0.84 0.11 0.05
Matches are distributed among these distances:
853 1 0.00
854 59 0.00
855 130 0.01
856 1 0.00
857 4 0.00
859 2 0.00
860 6 0.00
861 3 0.00
862 144 0.01
863 538 0.03
864 347 0.02
865 16 0.00
866 6 0.00
867 353 0.02
868 377 0.02
869 9 0.00
870 1 0.00
871 4 0.00
872 150 0.01
873 36 0.00
874 189 0.01
875 140 0.01
876 752 0.04
877 42 0.00
878 1008 0.06
879 286 0.02
880 7 0.00
881 8 0.00
882 18 0.00
883 297 0.02
884 7 0.00
885 4 0.00
886 9 0.00
887 406 0.02
888 63 0.00
889 905 0.05
890 911 0.05
891 328 0.02
892 14 0.00
893 183 0.01
894 81 0.00
895 211 0.01
896 1052 0.06
897 1057 0.06
898 1455 0.08
899 1208 0.07
900 1475 0.08
901 1033 0.06
902 826 0.05
903 197 0.01
904 119 0.01
905 51 0.00
906 237 0.01
907 8 0.00
908 2 0.00
909 9 0.00
910 1 0.00
911 9 0.00
913 1 0.00
914 1 0.00
915 3 0.00
917 4 0.00
918 1 0.00
920 2 0.00
923 2 0.00
924 1 0.00
925 2 0.00
926 1 0.00
927 2 0.00
929 4 0.00
930 1 0.00
931 1 0.00
933 4 0.00
935 5 0.00
936 3 0.00
937 3 0.00
938 1 0.00
939 6 0.00
940 11 0.00
941 12 0.00
947 13 0.00
948 11 0.00
949 6 0.00
951 3 0.00
952 3 0.00
953 8 0.00
954 2 0.00
955 4 0.00
956 2 0.00
957 3 0.00
958 6 0.00
959 4 0.00
960 6 0.00
961 2 0.00
963 2 0.00
964 1 0.00
965 3 0.00
967 7 0.00
968 1 0.00
971 4 0.00
973 4 0.00
974 1 0.00
976 1 0.00
977 8 0.00
978 2 0.00
979 9 0.00
980 2 0.00
981 17 0.00
982 8 0.00
983 7 0.00
985 3 0.00
986 134 0.01
987 136 0.01
988 154 0.01
989 2 0.00
990 1 0.00
992 5 0.00
993 143 0.01
995 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATG
GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCC
TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
GCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGT
CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
Found at i:18696295 original size:26 final size:26
Alignment explanation
Indices: 18696255--18696307 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18696245 CTGGTCTGAT
* *
18696255 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTAGAAATGAACTCT-GTATG
18696281 CTTAGACTAGAAATGAACTCTGTATG
1 CTTAGACTAGAAATGAACTCTGTATG
18696307 C
1 C
18696308 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCTGTATG
Found at i:18698907 original size:26 final size:26
Alignment explanation
Indices: 18698878--18698930 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18698868 CCAGTCCGAT
* *
18698878 CTTAGACTGTGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
*
18698904 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
18698930 C
1 C
18698931 CTAAGTCCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:18700696 original size:26 final size:26
Alignment explanation
Indices: 18700667--18700719 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18700657 CCGGTCCGAT
18700667 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
18700693 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
18700719 C
1 C
18700720 CTAAGTCACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:18701619 original size:26 final size:26
Alignment explanation
Indices: 18701568--18701620 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18701558 CCGGTTCGAT
**
18701568 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCATATG
*
18701594 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
18701620 C
1 C
18701621 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:18702505 original size:26 final size:26
Alignment explanation
Indices: 18702466--18702518 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18702456 GCGGTCTGAT
18702466 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
18702492 CTTAGACTCG-GAATGAACTCTGTATG
1 CTTAGACT-GAGAATGAACTCCGTATG
18702518 C
1 C
18702519 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:18703380 original size:26 final size:26
Alignment explanation
Indices: 18703344--18703396 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18703334 CTGGTCCAAT
18703344 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18703370 CTTAGACTGGGAATGAGCTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18703396 C
1 C
18703397 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18705285 original size:26 final size:26
Alignment explanation
Indices: 18705236--18705286 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18705226 ATGGTCTGAT
* * *
18705236 CTTAGACTGGGAATGAAGTTCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
18705262 CTTAGACTGGGAAGGAACTCCGTAT
1 CTTAGACTGGGAAGGAACTCCGTAT
18705287 TCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:18705359 original size:185 final size:185
Alignment explanation
Indices: 18705044--18705447 Score: 596
Period size: 185 Copynumber: 2.2 Consensus size: 185
18705034 CTTCGGTCTA
* *
18705044 GTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGCATTCCCAAG
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAGGAACTCCGCATTCCCAAG
* * * * *
18705109 TCATCCGATGAAATGAGCGTCCGGACGCTCAGCCAGCCAGAGGGGCGGGATGCGTAAGTCGGGGA
66 TCATCCCATGAAATGAGCGTACGGACGCTCAACCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
18705174 TCGACCGGGTCCTCC-TCTGTATGCTGCCGATCCTGCTGCTGAAACCCTCAGTAT-G
131 TCGACCGGGTCC-CCTTCTGTATGCTGCCGATCCTGCTGCTGAAACCCTCAGT-TCG
* * * *
18705229 GTCTGATCTTAGACTGGGAATGAAGTTCGTATGCTTAGACTGGGAAGGAACTCCGTATTCCTAAG
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAGGAACTCCGCATTCCCAAG
** *
18705294 TCATCCCATGAAATGAGCGTACGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
66 TCATCCCATGAAATGAGCGTACGGACGCTCAACCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* ** **
18705359 TTGACCGGGTCCCCTTCTGTATTTTTTCGATCCTGCTGCTGAAACCCTCAGTTCG
131 TCGACCGGGTCCCCTTCTGTATGCTGCCGATCCTGCTGCTGAAACCCTCAGTTCG
*
18705414 GTCTAATCTTAGACTGGGAATGAACTCCGTATGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGC
18705448 CTAAGCTAAC
Statistics
Matches: 195, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
184 3 0.02
185 192 0.98
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.24
Consensus pattern (185 bp):
GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAGGAACTCCGCATTCCCAAG
TCATCCCATGAAATGAGCGTACGGACGCTCAACCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
TCGACCGGGTCCCCTTCTGTATGCTGCCGATCCTGCTGCTGAAACCCTCAGTTCG
Found at i:18707035 original size:26 final size:26
Alignment explanation
Indices: 18706999--18707049 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18706989 GGTCCGATCC
18706999 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
18707025 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
18707050 CGAAGTCAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:18710365 original size:26 final size:26
Alignment explanation
Indices: 18710336--18710388 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18710326 CCTGTTTGAT
*
18710336 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18710362 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18710388 C
1 C
18710389 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18710715 original size:842 final size:849
Alignment explanation
Indices: 18708171--18710759 Score: 2696
Period size: 842 Copynumber: 3.0 Consensus size: 849
18708161 GCCGTTCGAG
* * ** * * *
18708171 ATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
1 ATTTTTTAAAATTTTTTCAGCAGGA-TTTTGGGTGCCAAATTTGGTAGACATGATCCTTGTATCT
* * * * * * * * **
18708235 TTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACGAGATTTTGCAACCATTTGA
65 TTGTTGGCATACAAAAAAAAATTCAGCCAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGA
* * * * ** *
18708300 AAAAAATGGCCGC-ATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
130 AAAAAGTGTCC-CAATTTCAAACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCACAAATG
* * * * * *
18708364 CTGTTTAAGGGGGTATGAGTTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
194 CTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGA
* * *
18708429 GCCAGCACCCACCGCACATCATGTGCGCACACCTCCCCGGCCCCTCCGATCGTCGGAACCCCAAT
259 ACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGGGCCC-CC--TCG-CGGAA-CCCAAT
* * * * ** *
18708494 GCCGCCGGTCAGGTTCTCCGGCTATGCTCCGATGATGGTGCCCTGACGAAGAAAAATGTGGCACC
318 GTCGCC-G--A-----T--AG--ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACC
* * * ** ** * *
18708559 AGTACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTTCGATCTTAGTCTGGGAA
371 AGCACATGCCCGAGCCCAGAATGTGCTACCGTAACCCTCGGTCCAGTTCGATCTTAGACTGGAAA
* * ** **
18708624 TGAA-TTTCGTATGCTTAGATTGGGAATGAACTTTGTATGCCTAAGTCAACTAACGAAACGAGCG
436 TGAACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
** * * * * * * * * *
18708688 TGCGGGCGTTCAGTCGGCCAGACGGGCGGGATGCGCAAGCCGAGGATCAGCTGAGTCTCCCTCTA
500 TGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCGTAAGCAGAGGATCGGCCGGGTCCCCCTCTA
* * * * * *
18708753 CGTACTG-CGATCCTGCTGCCGTAACCCTC-GATTCGGTCTGATCTTAGACTGGGAATGAACTTC
565 CATGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCCGGTCCGATCTTAGACTGGGAATGAACTAC
* * * * *
18708816 GTATGCCTAAGCC-ACATGACGAAACGAGC--G--GGC-GG-G--TGGGTACTACGCCGGCCAGA
629 GTATGCCTAAGCCAAC-CGATGAAAGGAGCGGGTAGGCGGGCGAAAGGGCACTACGCCGGCCAGA
* * * * * * *
18708872 GAGACGGGACGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
693 GAGGCGGAATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATCT
*** * * * * *
18708937 CTGTGTGCCAATTCCATTTTTATGGCTTGTAAATTC-ATAAAATGGTCTCTTAAACCTTCACGTG
758 CTACATGCCAATGCCATTTTAATGGCTTGTAAATTCAAT-CAATGGTCCCTTAAGCCTTCA-GTG
*
18709001 AAGTTTCATGGCAAGACGACTTGTTTTCTATT
821 AAGTTTCATGGCAAGACGACTCG-TTT-T-TT
* * *
18709033 TTTCACGATTTTCAAAAATTTTTACGGTTCGAGAGTTTTAAAAATTTTTTCGGAAGGCGTTTTGG
1 ATT-----TTTT--AAAATTTTTTCAG--C-AG-G--------A--TTTT-----GG-G---T-G
* * * * *
18709098 CCGTAAACTTGGTAGGCATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAA
35 CC--AAATTTGGTAGACATGATCCTTGTATCTTTGTTGGCATACAAAAAAAAATTCAGCCAAAAA
*
18709163 ATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAAACACTTTAATAAC
98 ATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAAACACTTTAATAAC
* *
18709228 TACTGGCAGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
163 TACTGGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
18709293 GAGGGATAGGGGCCCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGCGCACACCC
228 GAGGGATAGGGGCCCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGCGCACACCC
* * *
18709358 CCCGGGCCCCCGTTCGTCGGAACCCCAATGTCGCCGATCAGGTTCTCCGATGATGGTGCCCCGAC
293 CCCGGGCCCCC--TCG-CGGAA-CCCAATGTCGCCGAT-AGATGCTCCGACGATGGTGCCCCGAC
** * * * * * *
18709423 GAAGAAAAATGTGGCTCCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCTTTGGTTCAGT
353 GAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGAATGTGCTACCGTAACCCTCGGTCCAGT
*
18709488 TCGATCTTAGACTGGAAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTTTGCCTAAGTC
418 TCGATCTTAGACTGGAAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * *
18709553 AACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCTAGAGGGGCGGGATGCGTAAGCTGAGGATC
483 AACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCGTAAGCAGAGGATC
* **
18709618 GGCCGGGTCCCCCTCTACATGCTGCTGATCCTGCTGTTGCAACCCTCAGTCCGGTCCGATCTTAG
548 GGCCGGGTCCCCCTCTACATGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAG
* * *
18709683 ACTGGGAATGAACTACGTATGCCTAAGCCAACCGATGAAATGAGCGGGTGGGTGGGCGAAAGGGC
613 ACTGGGAATGAACTACGTATGCCTAAGCCAACCGATGAAAGGAGCGGGTAGGCGGGCGAAAGGGC
*
18709748 ACTACGTCGGCCAGAGAGGCGGAATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
678 ACTACGCCGGCCAGAGAGGCGGAATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
18709813 CACATCTTCATATCTCTGCGTGCCAATGCCATTTTAATGGCTTGTAAATTCAATCAATGGTCCCT
743 AACATCTTCATATCTCTACATGCCAATGCCATTTTAATGGCTTGTAAATTCAATCAATGGTCCCT
18709878 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTCGTTTTTT
808 TAAGCCTTCA-GTGAAGTTTCATGGCAAGACGAC-TCGTTTTTT
* *
18709922 ATTTTTTAAAATTTTTTCAGCAGGATTTTGGGTGCCAAATTTGGTAGACGTGATCGTTGTATCTT
1 ATTTTTTAAAATTTTTTCAGCAGGATTTTGGGTGCCAAATTTGGTAGACATGATCCTTGTATCTT
* * *
18709987 TGTTGGCATACACAAAAAACTTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
66 TGTTGGCATACAAAAAAAAATTCAGCCAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * * ** *
18710052 AAAAGTGTCCCCATTTCAGACACTTTCATGGCTACTGGCAGCAAACCTGTTAAATCACAAATGCT
131 AAAAGTGTCCCAATTTCAAACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCACAAATGCT
*
18710117 CTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGAG-CCAATATAAGGGCCAAGTA
196 CTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG-GCCCAATATAAGGGCCAAGAA
* * * * * *
18710181 TCAGCACCCATCGCACATCATGTGCGCACACCCCTC-GGCCTCC-C-C-G-A-TC-AGGTTCTCC
260 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGGCCCCCTCGCGGAACCCAATG-TCGCC
* ** *
18710239 GAT-GATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATACGACAGCAGCACATGCCCGAGCCCA
324 GATAGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCA
** * * *
18710303 -AATGTGCTGTCGTAACCCTCGGTCCTGTTTGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
389 GAATGTGCTACCGTAACCCTCGGTCCAGTTCGATCTTAGACTGGAAATGAACTCTGTATGCTTAG
* * * *
18710367 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGC-GTGAGTCGGCC
454 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCC
* * * * *
18710431 AGAGGGGCAGGATGCGTAAGTCAG-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGTT
519 AGAGGGGCAGGATGCGTAAG-CAGAGGATCGGCCGGGTCCCCCTCTACATGCTGCCGATCCTGCT
* * * * *
18710495 GCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGATTGAACTCCGTATGCCTAAGCCAACCGA
583 GCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGA
* ** * *
18710560 TTAAAGGAGCGGGTAGGCGGGCGAGCGGGCACTACGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
648 TGAAAGGAGCGGGTAGGCGGGCGAAAGGGCACTACGCCGGCCAGAGAGGCGGAATGCGCAAGCCG
* * * *
18710625 TGGATTGATAGGGTGGTAGGTGGGTTTTGGAACATCTTCGTATTTCTACATGCCAATGCCATTTT
713 TGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATCTCTACATGCCAATGCCATTTT
* * *
18710690 TATGGCTTGTAAATTC-ATACAATGGTCCGTTAAGCCTTGAGTGAAGTTTCATGGCAAGACGACT
778 AATGGCTTGTAAATTCAAT-CAATGGTCCCTTAAGCCTTCAGTGAAGTTTCATGGCAAGACGACT
18710754 CGTTTT
842 CGTTTT
18710760 CTACGTTTCA
Statistics
Matches: 1488, Mismatches: 187, Indels: 126
0.83 0.10 0.07
Matches are distributed among these distances:
840 7 0.00
841 25 0.02
842 266 0.18
843 108 0.07
844 50 0.03
845 2 0.00
846 8 0.01
848 1 0.00
849 1 0.00
850 1 0.00
852 1 0.00
855 6 0.00
856 235 0.16
857 1 0.00
858 3 0.00
859 1 0.00
862 3 0.00
863 2 0.00
867 4 0.00
868 4 0.00
869 12 0.01
870 1 0.00
872 2 0.00
873 1 0.00
878 1 0.00
879 2 0.00
880 1 0.00
881 1 0.00
882 220 0.15
883 72 0.05
884 9 0.01
885 2 0.00
887 2 0.00
888 3 0.00
889 6 0.00
890 2 0.00
891 154 0.10
892 5 0.00
893 26 0.02
894 10 0.01
895 227 0.15
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (849 bp):
ATTTTTTAAAATTTTTTCAGCAGGATTTTGGGTGCCAAATTTGGTAGACATGATCCTTGTATCTT
TGTTGGCATACAAAAAAAAATTCAGCCAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAA
AAAAGTGTCCCAATTTCAAACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCACAAATGCT
CTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGAAC
CAGCACCCATCGCACATCATGTGCGCACACCCCCCGGGCCCCCTCGCGGAACCCAATGTCGCCGA
TAGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGA
ATGTGCTACCGTAACCCTCGGTCCAGTTCGATCTTAGACTGGAAATGAACTCTGTATGCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAG
AGGGGCAGGATGCGTAAGCAGAGGATCGGCCGGGTCCCCCTCTACATGCTGCCGATCCTGCTGCC
GCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGATGA
AAGGAGCGGGTAGGCGGGCGAAAGGGCACTACGCCGGCCAGAGAGGCGGAATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATCTCTACATGCCAATGCCATTTTAAT
GGCTTGTAAATTCAATCAATGGTCCCTTAAGCCTTCAGTGAAGTTTCATGGCAAGACGACTCGTT
TTTT
Found at i:18710794 original size:27 final size:25
Alignment explanation
Indices: 18710756--18710813 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
18710746 AGACGACTCG
18710756 TTTTCTACGTTTCACGATTTTTAAAAC
1 TTTT-TACGTTTCA-GATTTTTAAAAC
* * *
18710783 TTTTTACGGTTTGAGATTTTTTAAAT
1 TTTTTAC-GTTTCAGATTTTTAAAAC
18710809 TTTTT
1 TTTTT
18710814 CGAAAGAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 18 0.67
27 9 0.33
ACGTcount: A:0.22, C:0.10, G:0.10, T:0.57
Consensus pattern (25 bp):
TTTTTACGTTTCAGATTTTTAAAAC
Found at i:18712532 original size:26 final size:26
Alignment explanation
Indices: 18712496--18712546 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18712486 GATCCGATCA
18712496 TAGACTAGGAATGAACTCTGTATGCT
1 TAGACTAGGAATGAACTCTGTATGCT
*
18712522 TAGACTGGGAATGAACTCTGTATGC
1 TAGACTAGGAATGAACTCTGTATGC
18712547 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCTGTATGCT
Found at i:18713424 original size:26 final size:26
Alignment explanation
Indices: 18713395--18713445 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18713385 GGTCCGATCA
18713395 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
18713421 TAGACTGGGAATGAACTTCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
18713446 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:18714100 original size:890 final size:892
Alignment explanation
Indices: 18710841--18718839 Score: 9273
Period size: 899 Copynumber: 9.1 Consensus size: 892
18710831 CTAAACTTAT
* * * ** *
18710841 TGCGCAAGTCAGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATATTGTTGCCGCAACCCTC-
1 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCG
* * *
18710905 AGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGG
66 A-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAGC--
* * * *
18710970 GCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGG
127 GCGAGCGGGCGGGCAGTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * *
18711035 TAGGTGGGATTAGGCACATCTTCAAATTTTTGCATGCCAAAGCCATTTTTATGGCTTGTAAATTC
192 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
*
18711100 ATACAATGGT-CCTTGAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTC
257 ATACAATGGTCCCTT-AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * *
18711164 ATGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTCACAATTTTTTCAGAAGGAGTTGTGGCCC
321 ACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTA-AATTTTTT-GGAAGGAGTTTTGGCCC
*
18711228 CAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
384 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * **
18711293 AAAGTGTATAAGATTTTGTGACCATTCGAAAAAAGTGTCCTTATTTCAGACACTTTAATGGCTAC
449 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
18711358 TCGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTTGAGGTTTGATGAG
514 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
18711423 GGATAGGGGGCCAATAT-AGGGCCAAGTACCACCATCCATCGCACATCATGTGCGCACACCCCCC
579 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC
* * *
18711487 CGACCCCCCCGATCG-CGAGAACCCTAATGCCGTCGGTCAGGTTCTC--CG--G-T-----GATG
643 CGGCCCCCCCGATCGCCG-GAACCCCAATGCCGCCGGTCAGGTTCTCGACGATGCTCCGACGATG
* * * *
18711541 GTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTG-CGCAACC-
707 GTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCACCCT
* *
18711604 C--T-C-G---G-TCTAGTCT--G---G---T-C-T-TG----GACTGGGAATGAACTCCGTATA
772 CGGTCCGGTCCGATCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
** * * *
18711646 ATTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTCAGCCGACCAGAGGGGCGGGA
837 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * ** * * * * * *
18711702 TGTGGAAGTTGGGGATCGGCCGGGT-CCACTCTGCTTGCTGCTGATCCTGTTGCCGCAACCCTTG
1 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCG
* * * *
18711766 GTCCGGTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCTACAAGATAAGCGGG
66 ATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC--GA-AA--GAG
* * * *
18711831 CGGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGG
126 C--GCGAGCGGGCGGGCAGTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* *** **
18711896 TGGTAGGTGGGTTTAGGTACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGAATTGTAAA
189 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* * *
18711961 TTCAAACAATAGTCCCTTAAGCCTTCAC--GAAGTTTCATGCCAAGACGACTCGTTTTCTATTTT
254 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * ** *
18712024 TCACGATTTTTGAAAATTTTTACGGTTCGGGATATTTTAAAATTTTTTTAAAAGGCGTTTTGGCC
319 TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAA-TTTTTTGGAAGGAGTTTTGGCC
* *
18712089 CCAAACTTGATAGACGTGATCCTTGTATTTATGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
383 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
18712154 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTA
448 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * *
18712219 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTATGAGTTCTCAAGGTGTGATGA
513 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * *
18712284 GGGATAAGGGGCCAATATAAGGGCCAAGTACCAGTACCAATCGCACATCATGTGTGCACACCCCC
578 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * ** *
18712349 CGGCCCCCCCGATCGTCAGAACCCCAATGCCGCCTGTCAGGTTCTCCGGTGATGCTCCGGCGATG
643 CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT-CGACGATGCTCCGACGATG
* * * *
18712414 GTGCCTCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAGCCC
707 GTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA-CCC
* * * *
18712479 TCGGTCCGATCCGATCATAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTA
771 TCGGTCCGGTCCGATC-TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * *
18712544 TGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGTCGGCCAGAGGAGCGGGA
835 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * *
18712602 TGCGCAAGCTGGGGATCGATCGGG-CCCCCTTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTC
1 TGCGCAAGCCGGGGATCGGTCGGGTCCCCC-TCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTC
* * * * * *
18712666 GGTCCAGT-TCAATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCGACCGACGAAACGAGCG
65 GATCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAGCG
* *** * *
18712730 -GACGGACGGGCGGAGGCATTACGCCGATGAGAGAGACGGGATGCGCAAGCCGTGGTTGGATAGG
128 CGA--G-CGGGC-G-GGCAGTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
*
18712794 GTGGTAGGT-GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTCA
188 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* * *
18712858 ATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCAATTT
253 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * *
18712923 TTCATGATTTTTGAAACTTTTTGCGGTTCGAG-TTTTTTTAAAATTTTTTGGAAGGAGTTTTGGC
318 TTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTT-AAATTTTTTGGAAGGAGTTTTGGC
** * * *
18712987 CCCAAACTTATTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAACATTCAGCTAAAAAC
382 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
18713052 TCAAAGTTTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTAATGGCT
447 TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
18713117 ACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
512 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
*
18713182 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCAC-CCCC
577 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* *
18713246 CTCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGCGA
642 C-CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT-CGACGATGCTCCGACGA
* *
18713311 TGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGTATGTGCTGCCACAGC
705 TGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA-C
*
18713376 CCTCGGTCCGGTCCGATCATAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCG
769 CCTCGGTCCGGTCCGATC-TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * *
18713441 TATGCCTAGGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGCGGTGGGA
833 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * *
18713501 TGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGTCGCAATCCTCG
1 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCG
* * * * *
18713566 ATCCGGTCCGATCTTAGACTAGGAATGAACTTCATATGCCTAAGTCAACCGACG-AA-A-C-C-A
66 ATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGAGCGCGA
* ** * * *
18713626 GCGGGCGGGCAGTACGCCGACGGGAGACACGGGATGCGCAAGCCGTGGTTGGATAGGGTGGTAGG
131 GCGGGCGGGCAGTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
18713691 TGCGTTTACGCACATCTTCATATTTCTGCATGCCAATGCCATGTTTATGGCTTGTAAATTCATAC
196 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
18713756 AATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGAT
261 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * *
18713821 TTTTGAAACTTTTTACGGTTCAGGG-TTTTTTTAAATTTTTTGGAAGAAGTTTTGGCCCTAAACA
326 TTTTGAAACTTTTTACGGTTC-GGGATTTTTTTAAATTTTTTGGAAGGAGTTTTGGCCCCAAACT
* * *
18713885 TGGTAGACGTCATCCTTGTATTTTTGTTGGCATCCACAAAAAAATTCAGCGAAAAACTCAAAGTG
390 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
* *
18713950 TACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAG
455 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
18714015 CAAACCTGTAAAATCTCAAATGCTCTTTAAGAGAGTGTGAGTTCTCGAGGTTTGGTGAGGGATAG
520 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
18714080 GGGGCCAATATAAGGGCCAAGTACCAGCACCAATTGCACATCATGAGCGCACACCCCCCTTTCGG
585 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC---CGG
* * *
18714145 -CCCCCCGATCACCGGAACCCCAATGCCACCGGTCAGGATCTC--CGA---T---A--ATGGTGC
646 CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCGACGATGCTCCGACGATGGTGC
* * * * * * *
18714199 CCCGACGAAGAAAAATACGGCCCCAGCACATGCCCAAGCCCAGCATGTGCTACCGTAACC-C--T
711 CCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCACCCTCGGT
18714261 -C-G---G---T---CT-----TG---T-CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTA
776 CCGGTCCGATCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
18714304 AGTCAACCCACAAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGTGCGGGA
841 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * ** *
18714356 TGCACAAGCC-GGGATCGGTCAGGTCCCCCTCTGCGTGCTACCGATCCTGCTATCGCATCCCTCG
1 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCG
** * ** * * *
18714420 ATTTGATCAAATCTTAGACGGGGAATGAACTCCGTATGCCAAAGCCAACTGACGAAATGAGCGGG
66 ATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAGC--G
* * *
18714485 CGGGCGGTG-GGGCAGGCACTACGCCGGCCAGAGAGACGGGATGGGCAAGCCGTGGATAGATAGG
128 CGAGCGG-GCGGGCA-G---TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
18714549 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTATAA
188 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* * *
18714614 ATTCAAAAAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
253 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
** ** * * * * *
18714679 TTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTTTAATTTTTTCAGCAGGAGTTCTGAC
318 TTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTT-GGAAGGAGTTTTGGC
* * * * * *
18714744 CCTAAACTTGGTAGGCATGATCCTTGTGTTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAAC
382 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* ** * *
18714809 TCAAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTTTCCGTTTCAGACACTTTAATGGCA
447 TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * *
18714874 ACTGGCAGCGAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGTTTTGATG
512 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * *
18714939 AGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGTACCCATTGCACATCGTGTGCGCACACCCC
577 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
** ***
18715004 TTGG-CCCCCCGATCGCCGGAACCCCAATGCCGTTAGTCAGGTTCT---C--TG----G-CGATG
642 CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCGACGATGCTCCGACGATG
* * *
18715058 GTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACC-
707 GTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCACCCT
* *
18715122 C--T-C-G---G-TC----C--------AA-TCCG-AT-CTTAGACT-GGAATGAACTACATATG
772 CGGTCCGGTCCGATCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* *
18715163 CCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGA
837 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * * *
18715219 TGCGCAAGCCGGGGATTGGTCAGGTCCCCCTCTGCATGCTACCGATCCTACTGCCGCAGCCCT-T
1 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCG
** * * * * *
18715283 AGTTTGATCTGATATTAGACTGGGATTGAACTTCGTATGCCTAAGCCAACCGAGGAAACGAGCGG
66 A-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAGC--
* * ** *
18715348 GCAGACGGGCAGGCGGGCGAGCACTACACCGGCCAGAGAGACGGGATGAACAAGCCATGGATCGA
127 GC-GA---GCGGGCGGGC-AG---TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * *
18715413 TAGGATGGTAGGTGGGTTTAGGTACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTT
184 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
18715478 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG-CGACTCGTTTTCT
249 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
** * *
18715542 ATTTTTCATTATTTTTGAAACTTTTTACGATTCGGGATTTTTTTTAATTTTTTTGGAAGGAGTTT
314 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTTAAATTTTTTGGAAGGAGTTT
* *
18715607 TAGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
378 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
18715672 AAGCTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTTAGACACTTTAAT
443 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * * *
18715737 GCCTATTGGCAGCAAACCTATAAAATCTCAAGTGCTCTTTGAGGGGGTGTGAGTTCTCGAGGTTT
508 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
18715802 GATGAGGGATAGGGGGCCAATTTAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA
573 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* ** * **
18715867 CCCCCCGACCCCCCCGATCATCGGAACCCCAATG-CGCCGATCAGGTTCTTCGGTGATGCTCCGA
638 CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC-TCGACGATGCTCCGA
* * * * *
18715931 CGGTGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGT
702 CGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG-
* * * *
18715996 AACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACT
766 CACCCTCGGTCCGGTCCGATC-TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * *
18716061 CTGTATGCCTAAATCAACCCAC-AGAACGAGCGTGTGGTCGCTCAGCCGGCCACAGGGGCGGGA
830 CCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * * * * *
18716124 TGCGCAA------G--C---CGGGTACCCTTTTACATGCTGTCGATCCTACTGCCACAACCCT-T
1 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCG
* * * *
18716177 AGTCCAGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCGAACCGACGAAATGAGCAG
66 A-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAGC--
* * * * *
18716242 GCGGGTAGGCGGGCGGGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAAG
127 GC--G-A-GCGGGCGGGCAGTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * *
18716307 GTGGTAGGAGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCTTTTTTATGGCTTGTAA
188 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* * *
18716372 ATTCATACAGTGGTCCCATAAGCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
253 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * *
18716437 TTCATGATTTTTGAAACTTTTTACGGTTTGGGCTTTTTTAAAATTTTTTTGGAAGGTGTTTTGGC
318 TTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAA-TTTTTTGGAAGGAGTTTTGGC
*
18716502 CCCAAACTTGGTAGACGTGATCCTTGTATTTATGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
382 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * * * *
18716567 TCGAAGTTTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTGAGACACTTTGATGGCT
447 TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * *
18716632 ATTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGGTTTGATG
512 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
18716697 AGGGATAGGCGGCCAATATACGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
577 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
* * * *
18716762 CCCGGCCCCCTCGATCGTCGGAACCCTAATGCCGCCGATCAGGTTCTC--CG--G-T-----GAT
641 CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCGACGATGCTCCGACGAT
* * * * **
18716817 GGTGCCCC-AGTGAAGAAAAATGCGGCACCAGAACATGCCTGAACCTAGCATGTGCTGTTGCAAC
706 GGTGCCCCGA-TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC-AC
* * *
18716881 CCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCA
769 CCTCGGTCCGGTCCGATC-TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * *
18716946 TATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGCCGGCCAAAGGGGCGAGA
833 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* ** * * * *
18717006 TGCGCAAGTCGGGGATCGACCGGGCCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAACCCTCG
1 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCG
* * *
18717071 ATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAATCCAACCGACGAAATGAGCGGG
66 ATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GA----G
* * * * * *
18717136 CAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAAGTGCAAGCTGTGGATCGATAAGG
126 C--GCGAGCGGGCGGGCAGTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
18717201 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
189 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* *
18717266 TTCATACAATGGTCCCTTAAGCCTTCACATCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
254 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
** * * * * * *
18717331 TCACGATTTTCAAAACCTTTTGCGGTTAGGGATTTTTTAAAATTTTTTCGAAAGGAGGTTTGGCC
319 TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTT-GGAAGGAGTTTTGGCC
* *
18717396 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAACT
383 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
18717461 CGAAGTGTACAAGATTTGGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
448 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
18717526 CTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCTCGAGGTTTGATGA
513 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
18717591 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACACCC
578 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG--CGCACACCC
*** * * ** * *
18717656 CCCGGCCCTTTCGATCGCCAGAACCCCAATGCCGCTGGTCACATTCTTCGACAATGCTCCGATGA
641 CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC-TCGACGATGCTCCGACGA
* *
18717721 TGGTGCCCCGGTGAAGAAAAATGCGGCACCACCACAT------G--C--C-T-TG--G-C-CA--
705 TGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCACC
* * **
18717768 --------AG--C-A-CCAGACTGCAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
770 CTCGGTCCGGTCCGATCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * *
18717821 TGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCTGGCCAAAGGGGCGGGA
835 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * ** *
18717879 TGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCCTACTTTCGCAACCCTTA
1 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCC-TC
* ** * * * *
18717944 GTTTGGTTTAGTTTGATCTTAGTCTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGA
65 GATCCG----GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GA
* * *
18718009 GCG-GTCAGACGGGCGGGCGAGCACTACGCTGGCCAGAGGGACGGGATGCGTAAGCCGTGGATCG
125 GCGCG--AG-CGGGCGGGC-AG---TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *** *
18718073 ATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTGTGGCT
183 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* *
18718138 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGATGACTCGTTTTC
248 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* ** * * * **
18718203 TATTTTTCATGATTTTCAAAACTTTTTACGGTCCGAGATTTTTTGAAATTTTTTCTAAAGGAGTT
313 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTT-GGAAGGAGTT
* *
18718268 TGGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGATGGCATGCACAAAAAAA-TCAGCTA
377 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
18718332 AAAACTCAAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
442 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
18718397 TGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCTCGAGGTT
507 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
18718462 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
572 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
** * * * *** *
18718527 ACCCCCCGGCCCCCCCGATCGCCAAAATCCCAATGCTGCCAGTCAGGTTCTCCGGTAATGCTTCG
637 ACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT-CGACGATGCTCCG
* * * ** *
18718592 ACGATGGTGCCCCGGTAAAGAAAAATGTGTTACCAGCACAAGCCCGAGCCCAGCATGTGCTGCCG
701 ACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * * * *
18718657 CAACCCTCGGTCTGATCCGATATTAGACGGGGAATGAACTCTGTATGCTTAGATTGGGAATGAAC
766 C-ACCCTCGGTCCGGTCCGAT-CTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * *
18718722 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGCAGGA
829 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* ** * * * * ***
18718786 TGCGTAAGCCGACGATCAGCCGGGTCCCCCTTTACGAATTGCCGATCCTGCTGC
1 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGC
18718840 TGGCAGCAAT
Statistics
Matches: 6162, Mismatches: 748, Indels: 410
0.84 0.10 0.06
Matches are distributed among these distances:
854 91 0.01
855 85 0.01
856 2 0.00
857 3 0.00
858 2 0.00
860 78 0.01
861 23 0.00
862 329 0.05
863 232 0.04
864 254 0.04
865 7 0.00
866 205 0.03
867 536 0.09
868 193 0.03
869 2 0.00
871 1 0.00
872 1 0.00
873 207 0.03
874 20 0.00
875 92 0.01
876 3 0.00
877 196 0.03
878 371 0.06
879 4 0.00
880 1 0.00
881 4 0.00
882 228 0.04
883 4 0.00
884 3 0.00
885 6 0.00
886 1 0.00
887 5 0.00
888 5 0.00
889 57 0.01
890 551 0.09
891 318 0.05
892 46 0.01
893 602 0.10
894 147 0.02
895 13 0.00
896 5 0.00
897 14 0.00
898 84 0.01
899 642 0.10
900 160 0.03
901 76 0.01
902 3 0.00
903 2 0.00
904 10 0.00
905 105 0.02
907 133 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (892 bp):
TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCG
ATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGAGCGCGA
GCGGGCGGGCAGTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
TTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCGACGATGCTCCGACGATGGTGCCCCGA
TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCACCCTCGGTCCGGT
CCGATCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
Found at i:18716052 original size:26 final size:26
Alignment explanation
Indices: 18716016--18716068 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18716006 CCGGTCCAAT
18716016 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18716042 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18716068 C
1 C
18716069 CTAAATCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18716927 original size:26 final size:26
Alignment explanation
Indices: 18716898--18716950 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18716888 CCGATCCGAT
* *
18716898 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18716924 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
18716950 C
1 C
18716951 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18717369 original size:893 final size:896
Alignment explanation
Indices: 18715138--18718796 Score: 4628
Period size: 893 Copynumber: 4.1 Consensus size: 896
18715128 CCAATCCGAT
* * *
18715138 CTTAGACT-GGAATGAACTACATATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * *
18715202 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGGTCAGGTCCCCCTCTGCATGCTACCGATCC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCC
* * * * * *
18715267 TACTGCCGCAGCCCTTAGTTTGA-TCTGATATTAGACTGGGATTGAACTTCGTATGCCTAAGCCA
131 TACTGCCACAACCCTTAGTCTGAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
18715331 ACCGAGGAAACGAGCGGGCAGACGGGCAGGCGGGCGAGCACTACACCGGCCAGAGAGACGGGATG
196 ACCGACGAAACGAGCGGGCA-A---GCAGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATG
** * * * *
18715396 AACAAGCCATGGATCGAT-AGGATGGTAGGTGGGTTTAGGTACATCTTCATATTTTTGCGTGCCA
257 CGCAAGCCGTGGATCGATAAGG-TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
*
18715460 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
321 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGG
* ** * **
18715525 CAAG-CGACTCGTTTTCTATTTTTCATTATTTTTGAAACTTTTTACGATTCGGGATTTTTTTTAA
386 CAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAA
* * *
18715589 TTTTTTTGGAAGGAGTTTTAGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGC
451 TTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
18715654 ACAAAAAAATTCAGCTAAAAGCTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
516 ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * * * * * * * *
18715719 AATTTTAGACACTTTAATGCCTATTGGCAGCAAACCTATAAAATCTCAAGTGCTCTTTGAGGGGG
581 CATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGC
*
18715784 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATTTAAGGGCCAAGTACCAGCACCCATC
646 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * ** *
18715849 ACACATCATGTGCGCACACCCCCCGACCCCCCCGATCATCGGAACCCCAATG-CGCCGATCAGGT
711 GCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGATCAGGT
* * * * ** * *
18715913 TCTTCGGTGATGCTCCGACGGTGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCTGAG
776 TC-TC---CA-G---CGATGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGAACATGCCTGAG
* * * * *
18715978 CCCAGCATGTGCTGCCGTAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATG
833 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** *
18716042 CTTAGACTGGGAATGAACTCTGTATGCCTAAATCAACCCAC-AGAACGAGCGTGTGGTCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTACGGGCGCTCAG
* * * * *
18716106 CCGGCCACAGGGGCGGGATGCGCAAGCC-GGG-T--A-------CCCTTTTACATGCTGTCGATC
65 CCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATC
* * * *
18716160 CTACTGCCACAACCCTTAGTC-CAGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCG
130 CTACTGCCACAACCCTTAGTCTGAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * ** * * * *
18716224 AACCGACGAAATGAGCAGGCGGGTAGGCGGGCGGGCACTATGCCAGCCAGAGAGACGGGATGCGC
195 AACCGACGAAACGAGCGGGCAAGCAGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
18716289 AAGCCGTGGATTGATAAGGTGGTAGGAGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATAC
260 AAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * * *
18716354 CTTTTTTATGGCTTGTAAATTCATACAGTGGTCCCATAAGCCTTCACTTGAAGTTTCATGGCAAG
325 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
** * *
18716419 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGCTTTTTTAAAATTTT
390 ACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * *
18716484 TTTGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTATGTTGGCATGCACAA
455 TTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
18716549 AAAAATTCAGCTAAAAACTCGAAGTTTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATT
520 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * * * *
18716614 TGAGACACTTTGATGGCTATTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTG
585 TCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTG
* *
18716679 AGTTCTCGAGGTTTGATGAGGGATAGGCGGCCAATATACGGGCCAAGTACCAGCACCCATCGCAC
650 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
18716744 ATCATGTGCGCACACCCCCCCGGCCCCCTCGATCGTCGGAACCCTAATGCCGCCGATCAGGTTCT
715 ATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGATCAGGTTCT
* * *
18716809 CC-G-G-TGATGGTGCCCCAGTGAAGAAAAATGCGGCACCAGAACATGCCTGAACCTAGCATGTG
779 CCAGCGATGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGAACATGCCTGAGCCCAGCATGTG
**
18716871 CTGTTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
844 CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18716924 CTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * *
18716989 CGGCCAAAGGGGCGAGATGCGCAAGTCGGGGATCGACCGGGCCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCC
* * * *
18717054 TGCTACCACAACCC-TCGATCTGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAATCC
131 TACTGCCACAACCCTTAG-TCTGAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
18717117 AACCGACGAAATGAGCGGGCAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAAGTGC
195 AACCGACGAAACGAGCGGGCAAGCAGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
18717182 AAGCTGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
260 AAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
18717247 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATCAAGTTTCATGGCAAG
325 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
* * * *
18717312 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACCTTTTGCGGTTAGGGATTTTTTAAAATTTT
390 ACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * *
18717377 TTCGAAAGGAGGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTATGCACAA
455 TTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
18717442 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTGGTGACCATTTGAAAAAAGTGTCCCCATT
520 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
18717507 TCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTG
585 TCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTG
18717572 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
650 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *** * * **
18717637 ATCATGTGCACACACACCCCCCGGCCCTTTCGATCGCCAGAACCCCAATGCCGCTGGTCACATTC
715 ATCATGTG--CGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGATCAGGTTC
* *
18717702 TTCGACAATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATGCGGCACC--ACCA--CAT--G--
778 -TC--C-A-G---CGATGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGAACATGCCTGAGCC
**
18717759 C--C-T-TG--G-C-CAA------G--C-A--C---C--AGACTGCAAATGAACTCCGTATG
835 CAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
**
18717797 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * *
18717862 TGGCCAAAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCC
** * * * * *
18717927 TACTTTCGCAACCCTTAGTTTGGTTTAGTTTGATCTTAGTCTGGGAATGAACTTCGTATGCCTAA
131 TACTGCCACAACCCTTAGTCT-G---AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
18717992 GCCAACCGATGAAACGAGCGGTC-AGACGGGCGGGCGAGCACTACGCTGGCCAGAGGGACGGGAT
192 GCCAACCGACGAAACGAGCGGGCAAG-CAGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGAT
* * * ***
18718056 GCGTAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTATGTGCCA
256 GCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* *
18718121 ATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGG
321 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGG
* * * *
18718186 CAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTCCGAGATTTTTTGAAA
386 CAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAA
* *
18718251 TTTTTTCT-AAAGGAGTTTGGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGATGGCATG
451 TTTTTT-TGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
18718315 CACAAAAAAA-TCAGCTAAAAACTCAAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCC
515 CACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
18718379 CCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
580 CCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
18718444 CTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
645 CTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * *
18718509 CGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAAAATCCCAATGCTGCC-AGTCAG
710 CGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGA-TCAG
* * * ** * * *
18718573 GTTCTCCGGTAATGCTTCGACGATGGTGCCCCGGTAAAGAAAAATGTGTTACCAGCACAAGCCCG
774 GTTCTCC----A-G---CGATGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGAACATGCCTG
* * * *
18718638 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATATTAGACGGGGAATGAACTCTGTAT
831 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
18718703 G
896 G
* *
18718704 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * *
18718769 CGGCCAGAGGGGCAGGATGCGTAAGCCG
66 CGGCCAAAGGGGCGGGATGCGCAAGCCG
18718797 ACGATCAGCC
Statistics
Matches: 2401, Mismatches: 276, Indels: 153
0.85 0.10 0.05
Matches are distributed among these distances:
872 1 0.00
873 149 0.06
874 5 0.00
875 81 0.03
877 199 0.08
878 331 0.14
879 1 0.00
880 1 0.00
881 2 0.00
882 174 0.07
883 7 0.00
884 1 0.00
885 1 0.00
886 2 0.00
887 3 0.00
889 4 0.00
890 152 0.06
891 318 0.13
892 34 0.01
893 569 0.24
894 127 0.05
895 8 0.00
897 2 0.00
900 2 0.00
901 2 0.00
902 1 0.00
903 4 0.00
904 13 0.01
905 104 0.04
907 103 0.04
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (896 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCC
TACTGCCACAACCCTTAGTCTGAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAACGAGCGGGCAAGCAGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCA
AGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
TTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
CAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGA
GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
TCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGATCAGGTTCTCC
AGCGATGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGAACATGCCTGAGCCCAGCATGTGCT
GCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:18718708 original size:26 final size:26
Alignment explanation
Indices: 18718679--18718730 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18718669 TGATCCGATA
*
18718679 TTAGACGGGGAATGAACTCTGTATGC
1 TTAGACGGGGAATGAACTCCGTATGC
**
18718705 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGACGGGGAATGAACTCCGTATGC
18718731 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACGGGGAATGAACTCCGTATGC
Found at i:18719004 original size:26 final size:26
Alignment explanation
Indices: 18718975--18719026 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18718965 TGGTCTGATT
18718975 TTAGACTGGGAATGAAC-TCTGTATGC
1 TTAGACTGGGAATGAACTTC-GTATGC
18719001 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTTCGTATGC
18719027 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTTCGTATGC
Found at i:18719093 original size:296 final size:296
Alignment explanation
Indices: 18718555--18719136 Score: 815
Period size: 296 Copynumber: 2.0 Consensus size: 296
18718545 TCGCCAAAAT
* * * *
18718555 CCCAATGCTGCCAGTCAGGTTCTCCGGTAATGCTTCGACGATGGTGCCCCGGTAAAGAAAAATGT
1 CCCAATGCTGCCAGTCAGGTTCTCCAGTAATGCTCCGACAATGGTGCCCCGGCAAAGAAAAATGT
** *
18718620 GTTACCAGCACAAGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATATTAGAC
66 GACACCAGCACAAGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGATCCGATATTAGAC
*
18718685 GGGGAATGAACTCTGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
131 GGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * ** *
18718750 GAGCGTACGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGTAAGCCGACGATC-AGCCGGGTCCC
196 GAGCGTACAGGCGCTCAGCCGACCAAAGGGGCAGGATGCACAAGCCGACGATCGA-CCGGGCCCC
*
18718814 CCTTTACGAATTGCCGATCCTGCTGCTGGCAGCAATC
260 CCTTTACGAACTGCCGATCCTGCTGCTGGCAGCAATC
* * * *
18718851 CCCAATGCTGCCGGTCAGGTTCTCCAGTGATGCTCCGACAATGGTGCCCTGGCGAAGAAAAATGT
1 CCCAATGCTGCCAGTCAGGTTCTCCAGTAATGCTCCGACAATGGTGCCCCGGCAAAGAAAAATGT
* * * * * * *
18718916 GACACCAGCACATGCTCGAGCCCAGGATGTGCTATCGCAACCCTCGGTCTGGTCTGATTTTAGAC
66 GACACCAGCACAAGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGATCCGATATTAGAC
* * *
18718981 TGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTTAACCCACGAAAC
131 GGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
** * *
18719046 GAGCGTTTAGGCGCTCAGCCGACCAAAGGGGCGGGATGCACAAGCCGACGATCGATCGGGCCCCC
196 GAGCGTACAGGCGCTCAGCCGACCAAAGGGGCAGGATGCACAAGCCGACGATCGACCGGGCCCCC
** *
18719111 CTTTACGTGCTGTCGATCCTGCTGCT
261 CTTTACGAACTGCCGATCCTGCTGCT
18719137 ACAACCCTCG
Statistics
Matches: 248, Mismatches: 37, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
296 247 1.00
297 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (296 bp):
CCCAATGCTGCCAGTCAGGTTCTCCAGTAATGCTCCGACAATGGTGCCCCGGCAAAGAAAAATGT
GACACCAGCACAAGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGATCCGATATTAGAC
GGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCGTACAGGCGCTCAGCCGACCAAAGGGGCAGGATGCACAAGCCGACGATCGACCGGGCCCCC
CTTTACGAACTGCCGATCCTGCTGCTGGCAGCAATC
Found at i:18719902 original size:26 final size:26
Alignment explanation
Indices: 18719873--18719924 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18719863 TGATCCGATA
18719873 TTAGATAGGGAATGAACTCCGTATGC
1 TTAGATAGGGAATGAACTCCGTATGC
* *
18719899 TTAGGTTGGGAATGAACTCCGTATGC
1 TTAGATAGGGAATGAACTCCGTATGC
18719925 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGATAGGGAATGAACTCCGTATGC
Found at i:18720586 original size:893 final size:892
Alignment explanation
Indices: 18718850--18723449 Score: 5645
Period size: 893 Copynumber: 5.2 Consensus size: 892
18718840 TGGCAGCAAT
* ** * * *
18718850 CCCCAATGCTGCCGGTCAGGTTCTCCAGTGATGCTCCGACAATGGTGCCCTGGCGAAGAAAAATG
1 CCCCAATGCCGCCGGTCAGGTTCTCCAGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
* * * * * * *
18718915 TGACACCAGCACATGCTCGAGCCCAGGATGTGCTATCGCAACCCTCGGTCTGGTCTGATTTTAGA
66 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGA
* * *
18718980 CTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTTAACCCACGAAA
131 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * * *
18719045 CGAGCGTTTAGGCGCTCAGCCGACCAAAGGGGCGGGATGCACAAGCCGACGATCGATCGGGCCCC
196 CGAGC-TGTGGGGGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-G---G---GAGTCCC
* * * * *
18719110 CCTTTACGTGCTGTCGATCCTGCTG-CTACAACCCTCGGTCTGGT-TCGATATTAGACTGGGAAT
253 CCTCTGCGTGCTATCGATCCTGCTGCCT-CAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAAT
* *
18719173 GAACTCCGTATGCCTAAGCCAACAGACGAAA--TGA-ACGGGCGGGCGGGCGGGCACTACGCTGG
316 GAACTCCGTATGCCTAAGCCAAC-GACGAAACGAGAGACGGGCGGGCGGGCGGGCACTACGCCGG
*
18719235 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCA
380 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * *
18719300 TATTTATGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATTCAATCGTCCCTTAAGCCTTCA
445 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * *
18719365 CGTGAAGTTTCATGGCAAGACGACTTGTTTTCTGTTTTTCACGA-TTTTCAAAACTTTTTGCGGT
510 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAACTTTTTGCGGT
* * **
18719429 TCGAGATTTTTTAAAATTTTTACAAAAGGAGTTTTGGTTCCAAACTTGGTAGACGTGATCCTTGT
575 TCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * * *
18719494 ATTTTTGTTTGCTTGCACAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGA-CAT
640 ATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* *
18719558 TTGAAAAAAGTGTCGCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAT
704 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
18719623 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCAA
769 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
*
18719688 AGTACCAGCACCCATCGCACATCATGTGCGCACAGCCCCCGGCCCCCCCGATCGCCGGAA
834 AGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCGGCCCCCCCGATCGTCGGAA
* * * **
18719748 TCCCAATGCCGTCGATCAGGTTCTCCAGCAATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATG
1 CCCCAATGCCGCCGGTCAGGTTCTCCAGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
* * * * *
18719813 CGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGATCCGATATTAGA
66 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGA
**
18719878 -TAGGGAATGAACTCCGTATGCTTAGGTTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
131 CT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * *
18719942 ATGAGCATGTGGGGGCTCAGCTGGCCAGAGGGGAGGGATGCGCAAGCCG-GGGA-TCCCCCGCTG
195 ACGAGC-TGTGGGGGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGGAGTCCCCCTCTG
* * * ** *
18720005 CGTGCTACCAATCCTGCTGCCTCAACCCTCAGTCCGGTCCAATCTTAGACTGGCAATGAACTCCG
259 CGTGCTATCGATCCTGCTGCCTCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * * * *
18720070 TATGCCTAAGCCAATCGATGAAACGAGCAGACGGGCGGGCGAGCAGGCACTATGCCGACCAGAAA
324 TATGCCTAAGCCAA-CGACGAAACGAG-AGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
18720135 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
387 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * *
18720200 ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAG
452 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * * *
18720265 TTTCATGGCAAGATGACTCGTTTTCTA-TTTTCACGATTTTTGAAACCTTTTTACAGTTCGGGAT
517 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAACTTTTTGCGGTTCGAGAT
** *
18720329 TTTTTAAAATTTTTTTTGAAGGA-TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTG
582 TTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
*
18720393 TTGGCATGCACAAAACAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
647 TTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * *
18720458 AAGTGTCCCCATTTTAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATACTCT
711 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
18720523 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGTATAGTGGGCCAATATAAGGGCCAAGTACCA
776 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
** *
18720588 TTACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTTGGAA
841 GCACCCATCGCACATCATGTGCGCACA--CCCCCGGCCCCCCCGATCGTCGGAA
*
18720641 CCCCAATGCCGCCGGTTAGGTTCTCCGACGATGCTCCGACGATGCTCCGACGATGGTGCCCCGAC
1 CCCCAATGCCGCCGGTCAGGTTCT-C--C-A-G---C-A--ATGCTCCGACGATGGTGCCCCGAC
* *
18720706 GAAGAAAAAAGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA--C-C---C---T
55 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGT
* * *
18720762 -CG----T---C--GG---G---TCCG-AT-CTTAGACAGGGAATCAACTCCGTATGCCTAAGAC
120 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * **
18720809 AACCCATGAAACGAG-TGTGCGGGTGCTCAGCTGTCCAGAGGGGCGAGATGCGCAAGTTGAGGAT
185 AACCCACGAAACGAGCTGTG-GGG-GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGG--
* * *
18720873 CGATCGGGTCCCCCTCTGCGTGCTGTCGATCATGCTG-CTGCAACCATCGGTCCGGTCTGATCTT
246 -GA----GTCCCCCTCTGCGTGCTATCGATCCTGCTGCCT-CAACCCTCGGTCCGGTCTGATCTT
* * * *
18720937 AGACTGAGAATCAACTCCGTATGCCTAAGCCAAC--C--AACGA-A-ACGAGCGGGCGGGCTGGC
305 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACGACGAAACGAGAGACGGGCGGGCGGGCGGGC
* * * *
18720996 ATTACGTCGGCCAGAGAGACGGGATGAGCAAGCCGTGGATCGAAAGGGTGGTAGGTGGGTTTAGG
370 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
18721061 CACATCTTCATATTGCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
435 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * *
18721126 TAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCGTTTTTTATTTTTAACAATTTTTG-AAAC
500 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAAC
* *
18721190 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
565 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
18721255 TGATCCTTGTATTTTTGTTGGCATGCATAAAAACATTCAGCTAAAAACTCGAAGTGAAGAAGATT
630 TGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
18721320 TTGTGACTATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
694 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * * *
18721385 GAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCCAGGTTTGATGAGGGATAAGGGGACAAT
759 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
18721450 ATAAGGTCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCTCCGGCCCCCCCGATC
824 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCC-CCGGCCCCCCCGATC
18721515 GTCGGAA
886 GTCGGAA
* *** * *
18721522 CCCCAATGTCGTTAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
1 CCCCAATGCCGCCGGTCAGGTTCTCCAGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
* *
18721587 CGGCACCAGCACATGCCCGAGCCTAGCATGTGCTACTGCAACCCTCGGT-TCGGTCCGATCTTAG
66 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCT-GGTCCGATCTTAG
18721651 ACTGGGAATGAACTCCGTATGCTTAGACCT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGA
130 ACTGGGAATGAACTCCGTATGCTTAGA-CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * ** * * *
18721715 AATGAGCATGCGAGCACTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCTGGGGATTGGTTAGGTC
194 AACGAGC-TGTGGGGGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC---CGA--GG-GA-GTC
* * * * * * * * *
18721780 CCCCACTGCATGCTACCGATCTTGCTACCGCAACCCTTGGT-CTGACTGATCTTAGACTGGGAAT
251 CCCCTCTGCGTGCTATCGATCCTGCTGCCTCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAAT
* * * * * *
18721844 GAACTCTGTATGCCTAAGCCAACTGACGAAACGAGCGGGCAGTCGGGCGGGCGGGCACAACGCCG
316 GAACTCCGTATGCCTAAGCCAAC-GACGAAACGAG-AGACGGGCGGGCGGGCGGGCACTACGCCG
* * * *
18721909 ACCAGAGAGACGGGATGCGCAAACCGTGGATCGATAGGGTGATAGGTGGCTTTAGGCACATCTTC
379 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
18721974 ATATTTCTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTAATACAATGGCCCCTTAAGCCTTC
444 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
18722039 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTCAAAACTTTTTGTGG
509 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAACTTTTTGCGG
*
18722103 TTC-AGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTAATCCTT
574 TTCGA-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * *
18722167 GTATTTTTTTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGAC
638 GTATTTTTGTTGGCATGC--ACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * *
18722232 CATTTGAAAAAAGTGTCCCTATTTTAGACACTTTAATGGCTACTGGCAGCAAAGCTGTAAAATCT
701 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
18722297 CAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGTG
766 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
18722362 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCC-G----CCC-A------GAA
831 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGCCCCCCCGATCGTCGGAA
* * * ** * *
18722410 CCCCAATGCCGCCGGTTAGGATCTCC-G-ATGATACTCCGGTGATAGTGCCCCAACGAAGAAAAA
1 CCCCAATGCCGCCGGTCAGGTTCTCCAGCA--ATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
*** * * *
18722473 AATGGCACCAGCACATGCCCGAGCCTAGCATGTGCTACCGTAACCATCGGTCTGGTCCGATCTTA
64 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTA
** *
18722538 GACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACGA
129 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
*
18722603 AACGAG-TGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCCGAGGATCGAACGGGT
194 AACGAGCTGTG-GGG-GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGG---G-A---GT
* *
18722667 CCCCCTCTGCGTGCTATCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAA
250 CCCCCTCTGCGTGCTATCGATCCTGCTGCCTCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAA
* * * * * *
18722732 TGAACTCTGTATGCCTAAGCCAAC--CG--ACGA-A-ACGAGCGGGCTGGTGGGCTCTACGTCGG
315 TGAACTCCGTATGCCTAAGCCAACGACGAAACGAGAGACGGGCGGGCGGGCGGGCACTACGCCGG
* * * * *
18722791 CCAGAGAGACGGGATGCACAAGCAGTGGATTGATAGGGTGGTGGGTGGGTTTAGGTACATCTTCA
380 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
*
18722856 TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
445 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * * * *
18722921 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTACTTTTCATGATTTTTGAAACCATTTCGCGGC
510 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAACTTTTTGCGGT
*
18722986 TCGAGATTTTTTAGAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTT
575 TCGAGATTTTTTA-AAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
18723050 GTATTTTTTTTGGCATGCACACAAAACA-TCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGAC
638 GTATTTTTGTTGGCATGCACA-AAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
18723114 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTACTGGCAGCAAACTTGTAAAA
701 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG---CTACTGGCAGCAAACCTGTAAAA
* *
18723179 TCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGGGGGATAGGGGGCCAATATAA
763 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
18723244 GGGCCAAGTACCAGCACCGATCGCACATCATGTGCGCACACCCCTCGACCCCCCCGATCGTCGGA
828 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CGGCCCCCCCGATCGTCGGA
18723309 A
892 A
* *
18723310 CCCTAATGCCGCCGGTCAGGTTTTCC-G----G-T---A--ATGGTGCCCCGACGAAGAAAAATG
1 CCCCAATGCCGCCGGTCAGGTTCTCCAGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
* * * * * *
18723364 CGGCACCAGCACATGCCTGAGCCTAGCATGTGCTGCCACAACCCTCAGTCTGGTTCGATCTTAGA
66 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGA
*
18723429 CTGGGAATGAATTCCGTATGC
131 CTGGGAATGAACTCCGTATGC
18723450 CTAAGCCAAC
Statistics
Matches: 3203, Mismatches: 373, Indels: 261
0.83 0.10 0.07
Matches are distributed among these distances:
870 72 0.02
872 1 0.00
873 2 0.00
875 4 0.00
876 4 0.00
877 72 0.02
878 220 0.07
879 264 0.08
880 7 0.00
881 222 0.07
882 103 0.03
883 68 0.02
884 5 0.00
885 127 0.04
886 80 0.02
887 7 0.00
888 241 0.08
889 219 0.07
890 5 0.00
891 5 0.00
892 93 0.03
893 411 0.13
894 13 0.00
895 8 0.00
896 45 0.01
897 107 0.03
898 211 0.07
899 5 0.00
900 31 0.01
901 8 0.00
902 4 0.00
903 5 0.00
904 340 0.11
905 188 0.06
906 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (892 bp):
CCCCAATGCCGCCGGTCAGGTTCTCCAGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGA
CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCTGTGGGGGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGGAGTCCCCCTCTGCG
TGCTATCGATCCTGCTGCCTCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGCCAACGACGAAACGAGAGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAACTTTTTGCGGTTCGAGATTTTT
TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
CATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
CATCGCACATCATGTGCGCACACCCCCGGCCCCCCCGATCGTCGGAA
Found at i:18720679 original size:11 final size:11
Alignment explanation
Indices: 18720663--18720695 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
18720653 CGGTTAGGTT
18720663 CTCCGACGATG
1 CTCCGACGATG
18720674 CTCCGACGATG
1 CTCCGACGATG
18720685 CTCCGACGATG
1 CTCCGACGATG
18720696 GTGCCCCGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:18721675 original size:26 final size:26
Alignment explanation
Indices: 18721646--18721698 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18721636 TCGGTCCGAT
18721646 CTTAGA-CTGGGAATGAACTCCGTATG
1 CTTAGACCT-GGAATGAACTCCGTATG
18721672 CTTAGACCTGGAATGAACTCCGTATG
1 CTTAGACCTGGAATGAACTCCGTATG
18721698 C
1 C
18721699 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACCTGGAATGAACTCCGTATG
Found at i:18724333 original size:713 final size:707
Alignment explanation
Indices: 18722690--18724894 Score: 3162
Period size: 704 Copynumber: 3.1 Consensus size: 707
18722680 CTATCGATCC
* * * * * *
18722690 TGCTGCCACAACCCTCGGTCTG-GTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCAGTCCGATTC-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
18722754 ACCGACGAAACGAGCGGGCTGGTGGGCTCTACGTCGGCCAGAGAGACGGGATGCACAAGCAGTGG
65 ACCGACGAAACGAGCGGGCGGGCGGGCTCTACGCCGACCAGAGAGACGGGATGCGCAAGC-GTGG
* *
18722819 ATTGATAGGGTGGTGGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
129 ATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
18722884 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
18722949 TTTCTACTTTTCATGATTTTTGAAACCATTTCGCGGCTCGAGATTTTTTAGAAATTTTTTCGAAA
259 TTTCTATTTTTCATGATTTTTGAAACCTTTTTGCGGTTCG-GATTTTTTA-AAATTTTTTCGAAA
* * * *
18723014 GGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACACAAAACAT
322 GGAGTTTTGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAAT
18723079 CAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
387 CAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCAGACA
* * *
18723144 CTTTAATGGCTACTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTT
451 CTTTAATGG---CTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
18723209 CTCGAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCGATCGCACATCA
513 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
18723274 TGTGCGCACACCCCTCGACCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGG-T-TTT-CC
578 TGTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCTAATGCCGCCGATCAGGTTCTTTGAC
* * *
18723336 G--G-T--A--ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCTAGCATG
643 GATGCTCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * *
18723394 TGCTGCCACAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCCGATTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** *
18723459 CCGACGAAATGAGCGGGCGAGCGGGCTCTACGCCGACTAGAGAGATAGGATGCGCAAGCCGTCGA
66 CCGACGAAACGAGCGGGCGGGCGGGCTCTACGCCGACCAGAGAGACGGGATGCGCAAG-CGTGGA
*
18723524 TCGATAGGGTGGAAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
130 TCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
* * *
18723589 CCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACAACTCGTT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
*
18723654 TTTTATTTTTCATGATTTTTGAAACCTTTTTGCGGTTCTGGATTGTTTTAAAATTTTTTCGAAAG
260 TTCTATTTTTCATGATTTTTGAAACCTTTTTGCGGTTC-GGATT-TTTTAAAATTTTTTCGAAAG
* *
18723719 GAGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATC
323 GAGTTTTGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATC
*
18723784 AGCTAAAAAGTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCGAGACAC
388 AGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTC-AGACAC
*
18723849 TTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCG
452 TTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
18723914 AGGTTTGATGAAGGATAGGGGGCCAATGTAAGGGCCAAGTACCAGCACCCATTGCACATCATGTG
517 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
18723979 CACACACCCCCCCGGCCCCCCCGAACGCCGAAACCCTAATGCCGCCGATCAGGTTCTTTGACGAT
582 CGCACA-CCCCCCGACCCCCCCGATCGTCGGAACCCTAATGCCGCCGATCAGGTTCTTTGACGAT
*
18724044 GCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCAGCAGCACATGCCCGAGCCCAGCATG
646 GCT-CGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * ** *
18724107 TGCTTCCGCAGCCCTCAAACCAATTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCCGATTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18724172 TCGACGAAACGAGCGGGCGGGCGGGCACTACACCGACCAAAGAGACGGGATGCGCAAGTCGTGGA
66 CCGACGAAACGAGCGGGCGGGCGGGCTCTACGCCGACCAGAGAGACGGGATGCGCAAG-CGTGGA
* * * *
18724237 TCGATAGGGAGGTAGGTGTGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
130 TCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
* * * *
18724302 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGATGACTCGCT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
18724367 TTCTATTTTTCATTATTTTCGATAA--TTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAG
260 TTCTATTTTTCATGATTTTTGA-AACCTTTTTGCGGTTC-GGATTTTTTAAAATTTTTTCGAAAG
* * * **
18724430 GAGTTTTGGCCCCAAACCTGGAAGACGTGATACTTGCATTTTTTTTGGCATGCACAAAAAAGTTC
323 GAGTTTTGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATC
* *
18724495 AGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACAC
388 AGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT-CAGACAC
* *
18724560 TTTAATGGCTACTGGTAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
452 TTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
18724625 AGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
517 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * ** *
18724689 CGCATACCCACCGACCCCCCTGATCGTCGGAACCCCAATGCTGCC-AGTCAGGTTCTCCGGCGAT
582 CGCACACCCCCCGACCCCCCCGATCGTCGGAACCCTAATGCCGCCGA-TCAGGTTCTTTGACGAT
* * *
18724753 GCTCTGGCGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATG
646 GCTC-GACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
18724816 TGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
1 TGCTGCCGCAACCCTCAGTCCGATTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
*
18724881 CCCACGAAACGAGC
66 CCGACGAAACGAGC
18724895 CTGCTGGTGC
Statistics
Matches: 1344, Mismatches: 136, Indels: 37
0.89 0.09 0.02
Matches are distributed among these distances:
701 118 0.09
702 40 0.03
703 4 0.00
704 417 0.31
705 11 0.01
707 1 0.00
708 3 0.00
709 171 0.13
710 49 0.04
711 215 0.16
712 17 0.01
713 296 0.22
714 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (707 bp):
TGCTGCCGCAACCCTCAGTCCGATTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCTCTACGCCGACCAGAGAGACGGGATGCGCAAGCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCATGATTTTTGAAACCTTTTTGCGGTTCGGATTTTTTAAAATTTTTTCGAAAGGAG
TTTTGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGC
TAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCAGACACTTTA
ATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCGACCCCCCCGATCGTCGGAACCCTAATGCCGCCGATCAGGTTCTTTGACGATGCTCG
ACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
Found at i:18726559 original size:705 final size:698
Alignment explanation
Indices: 18724984--18728681 Score: 2810
Period size: 705 Copynumber: 5.1 Consensus size: 698
18724974 CTACTGCCGC
* * * * *
18724984 AACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAA
1 AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-C-AC-GAA
*
18725049 CG-AGCGAGCGGGCGTGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGA
63 CGAAG-AAGC--G-G-GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGA
* * * * * * *
18725113 TCAATACGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTACATGCCTATGCCATTTTTCTG
123 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATG
* *
18725178 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACAACTCATT
188 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTT
* * ** * *
18725243 TTCTATTTTTCATGATTTTT-GAAACTTTTTACGGTTTGGGATTTTTTTAAATTTTTTTGGAAGG
253 TTCTATTTTTCACG-TTTTTCGAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCGGAAGG
*
18725307 CATTTTGGCCCCAAACTTGGTAGACGTGATCCTTG--TTTTTTGTTGGCATGCACAAAAAAATTC
317 -ATTTTGGCCCCAAACATGGTAGACGTGATCCTTGCATTTTTT-TTGGCATGCACAAAAAAATTC
* *
18725370 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTTAGACA
380 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACA
*
18725435 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTCTAAGGGGGTGTGAGTTCTT
444 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
18725500 GAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGT
509 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGT
* * * * *
18725564 GCGCACACCCCCCGG-CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATG
574 GCGCACACCACCCGGCCCCCCGATCATCGGAACCCCAATGCCGCCAGTCAAGTTCTCCGGCGATG
* * *
18725628 GCGCCCCGACAAAGAAAAATGCAGCACCAACACATGCCCGAGACCAGCATGTGCTGCCAC
639 GCGCCCCGACAAAGAAAAATACAGCACCAACACATGCCCGAGACCAGCATGTGCTGACAA
*
18725688 AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACTGACGAAA
1 AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC--ACG-AA
** * *
18725753 CGAACGGAAGGGCGGGCGGGCGGGCACTATACCGGCCAGAGAGACAGGATGTGCAAGCCATGGAT
63 CGAA--GAA--GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGAT
** *
18725818 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGACAATGCCATTTTTATGG
124 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGG
* * *
18725883 ATTGTAAATTCTTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
189 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTT
* **
18725948 TCTATTTTTTACGTTTTTCGAAACTTTTTATGGTTCAAAATTTTTTAAAATTTTTTCGGAAGGAT
254 TCTATTTTTCACGTTTTTCGAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGA-
*
18726013 TTTTGGCCCCAAACCTGGTAGACGTGATCCTTGCATTTTTTTTGGCATGCACAAAAAAATTCAGC
318 TTTTGGCCCCAAACATGGTAGACGTGATCCTTGCATTTTTTTTGGCATGCACAAAAAAATTCAGC
*
18726078 TAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
383 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * * *
18726143 AATGGCTATTGGCCGCAGACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTGGAGG
448 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGG
* * * *
18726208 TTTGATGGGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCGATCGCACATCATGTGCGC
513 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGC
*
18726273 ACACCACTCGGCCCCCCGATCATCGGAACCCCAATGCCGCCAGTCAAGTTCTCCGGTGATGCTCC
578 ACACCACCCGGCCCCCCGATCATCGGAACCCCAATGCCGCCAGTCAAGTTCTCC---G--G---C
* ** ** * ** * *
18726338 GGTAATGGTGCTTCGATGAAGAAAAATACGGCACCAGTACATGCTCGAGCCCAGCATGTGCT-AC
635 -G--ATGGCGCCCCGACAAAGAAAAATACAGCACCAACACATGCCCGAGACCAGCATGTGCTGAC
18726402 AGA
697 A-A
* * * *
18726405 AACCCTTGGT-CTGATCCGATCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAAC-CG-ATG
1 AACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACACGAACG
*
18726467 -A-AA-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
65 AAGAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAG
* *
18726529 GGTGGTAGGTGAGTTTAGGCACATCTTCATATTTTTGCATGCCAATACCATTTTTATGGCTTGTA
130 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTA
18726594 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATT
195 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATT
* * * * *
18726659 TTTCACGATTTTCCAAACTTTTTGTCGCTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
260 TTTCACGTTTTTCGAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGA-TTTTGG
*
18726724 CCCCAAACATGGTAGACGTGATCCTT-CTATTTTTATTGGCATGCACATAAAAAA-TCAGCTAAA
324 CCCCAAACATGGTAGACGTGATCCTTGC-ATTTTTTTTGGCATGCACA-AAAAAATTCAGCTAAA
18726787 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
387 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * *
18726852 GCTACTGGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAA-AGTGTGTGAGTTCTTGAGGTTTG
452 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTG
* *
18726916 ATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGAGCGCACAC
517 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACAC
* * * * * *
18726981 CACCCCCGGCCCCCCGATCACCGGAACGCCAATGCTTGAGCCAG-CATGTGCTACC-GCAACCCT
582 CA--CCCGGCCCCCCGATCATCGGAACCCCAATGC---CGCCAGTCAAGTTCT-CCGGCGA---T
* **** * * * * * * ** ** * * *
18727044 CAGTCCGGTTTGATCTTAGATTGGGAATGAACTTCCGTATGCTTAAGTCAACCCACAAAACGAGC
638 --G-GCGCCCCGA-C--A-A---AGAA--AAATACAGCA--C-CAACACATGCC-CGAGACCAGC
* * * *
18727109 --GTACGGGC-G
687 ATGTGCTGACAA
** ** * * * * ** * * * * **
18727118 CTCAGTCGG-CCATAAGGGCGGGATGTGTAAGCCAAGG-ATCGATCGGGTCCTCCTCTGCATGCT
1 AACCCTCGGTCC---A-GTC-CGATCT-T-AGACTGGGAAT-GAAC---T-C-CGTATGCCT-AA
* ** *** * * ** ** ** ** *
18727181 GCCGATC-CTG--CTGCCGCAA-CCCTCAGTCTGATCTAATCTTA-GATTGGAAATGA-ACTCCG
52 GCC-AACAC-GAAC-GAAG-AAGCGGGCGGGC-GGGC--A-C-TACG-CCGGCCA-GAGAGACGG
* * * * ** ** * * **
18727240 TATGC-CTAAGCCAACTGACGAAACAAGCAGGAGGGCGGGCGGGTGGGCACTACGC-CGACCAGA
106 GATGCGC-AAGCC-A-TG--G-ATC--G-A-TAGGG-TGGTAGGTGGG-TTTAGGCAC-ATC-TT
* * * ** * * * *
18727303 GAGACGTGATGCGCAAGCC-ATGCATCGATAGGGTGGTAAGTGGGTT-TAGGCACATCTTCATAT
157 CATA--T-TTTTGCATGCCAATGC--C-AT----T-TTTA-TGGCTTGTA---A-A--TTCATA-
*** * * * * * *
18727366 TTTTGCATGCC--AATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
203 CAATG-GTCCCTTAA-GCC--TTC-A---CGTG-AAGTT--T-C-ATGG---C--AAGAC--AAC
* * ** *
18727429 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTA--TTTTTCAGAATTTTCTAAACTTTTTGGGGT
248 -T--CGTTT--T-------CTA-T--TTTTC-ACGTTTTTC-GAAACTT------TTTAT--GGT
* *
18727492 T-TGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
288 TCAG-GATTTTTTAAAATTTTTTCGGAAGGA-TTTTGGCCCCAAACATGGTAGACGTGATCCTTG
*
18727556 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
351 CATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
18727621 TTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
416 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
18727686 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATACGGGGCCAATATAAGGGCC
481 AATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
18727751 AAGTGCCAGCACCCATTGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGTCGGAACCC
546 AAGTACCAGCACCCATTGCACATCATGTGCGCACACCACC-CGG-CCCCCCGATCATCGGAACCC
** * * * ** *
18727816 CAATGCTACCGGTCAGGTTCTCCGGTGATGCTTTGACGATGGTGCCCCGATGAAGAAAAATACGG
609 CAATGCCGCCAGTCAAGTTCTCC------G----G-CGATGGCGCCCCGACAAAGAAAAATACAG
* * * **
18727881 CACCAGCACTTGCCCGAG-CCTAGTATGTGCT-ACTGC
663 CACCAACACATGCCCGAGACC-AGCATGTGCTGAC-AA
* * *
18727917 AACCCTCGGTCCACTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCTAC-CG-ACGA
1 AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACACGAACGA
* * * * **
18727980 TACAAGCGGGAGGGCGATCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGTCGCGG
66 -AGAAGC-----GG-G--CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGG
* * * *
18728045 ATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
122 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTAT
* * * *
18728110 GGCTTGTAAATTCATACAATGGTCCTTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTTGT
187 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGT
* * * **
18728175 TTTCTATTTTTCATGATTTTT-GAAGCTTTTTACGGTTC-GAGATTTTTTAAAATTTTTTTAGAA
252 TTTCTATTTTTCACG-TTTTTCGAAACTTTTTATGGTTCAG-GATTTTTTAAAATTTTTTCGGAA
* * * *
18728238 GGAGTTTTGGCCCCAAACTTGGTAGACGAGATCCTTGTATTTTTTTTGGCATGCACAAAAAAGTT
315 GGA-TTTTGGCCCCAAACATGGTAGACGTGATCCTTGCATTTTTTTTGGCATGCACAAAAAAATT
* * *
18728303 CAGCTAAAAACTCGAAATGTACAAGATTTTCTGACCATTTG-AAAAAGTGTCCCCATTCCAGACA
379 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * * *
18728367 CTTTAATGGCTACTGGCAGGAAACCTGTAAAATCTCAAATGTTTTTTAAGGGGATGTGAGTTCTC
444 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
* * * * *
18728432 GAGGTTTGATGAGGGATAGGTGGCCAATATAATGGCTAAGTACTAGCACCCATCGCACATCATGT
509 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGT
* * * * * *
18728497 GCGCACTTCC-CTCCGGCCCCCTCGATCGTCGGAACACCAATACCGCCGGTCAGGTTCTCCGGTG
574 GCGCAC-ACCAC-CCGGCCCCC-CGATCATCGGAACCCCAATGCCGCCAGTCAAGTTCTCC----
* *** * * *
18728561 ATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAACACATGCCCGAGGCCAACATG
632 --G----G-CGATGGCGCCCCGACAAAGAAAAATACAGCACCAACACATGCCCGAGACCAGCATG
* * **
18728626 TACTGTCGC
690 TGCTGACAA
* * *
18728635 AACCCTCAGTCC-GATCCGATCTTAGATTGGGAACGAACTCCGTATGC
1 AACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGC
18728682 TTAGACTAAG
Statistics
Matches: 2385, Mismatches: 394, Indels: 416
0.75 0.12 0.13
Matches are distributed among these distances:
697 1 0.00
700 2 0.00
702 1 0.00
703 13 0.01
704 464 0.19
705 517 0.22
706 80 0.03
707 2 0.00
708 10 0.00
709 8 0.00
710 3 0.00
711 2 0.00
712 8 0.00
713 5 0.00
714 7 0.00
715 6 0.00
716 11 0.00
717 107 0.04
718 291 0.12
719 143 0.06
721 3 0.00
722 1 0.00
723 1 0.00
724 5 0.00
725 3 0.00
726 4 0.00
727 12 0.01
729 6 0.00
730 8 0.00
731 2 0.00
733 1 0.00
734 3 0.00
735 17 0.01
736 2 0.00
737 3 0.00
739 5 0.00
740 2 0.00
741 1 0.00
742 3 0.00
743 1 0.00
744 8 0.00
745 8 0.00
746 7 0.00
747 2 0.00
749 8 0.00
750 8 0.00
751 2 0.00
752 2 0.00
753 4 0.00
754 3 0.00
756 1 0.00
757 5 0.00
758 8 0.00
759 2 0.00
760 5 0.00
761 9 0.00
763 9 0.00
764 6 0.00
765 3 0.00
766 8 0.00
767 5 0.00
768 1 0.00
770 3 0.00
771 4 0.00
772 2 0.00
773 2 0.00
774 6 0.00
775 9 0.00
777 2 0.00
778 6 0.00
779 9 0.00
780 8 0.00
781 1 0.00
782 3 0.00
783 1 0.00
784 2 0.00
785 9 0.00
786 4 0.00
787 5 0.00
788 8 0.00
789 17 0.01
790 4 0.00
791 1 0.00
793 10 0.00
794 8 0.00
795 6 0.00
796 10 0.00
797 15 0.01
798 5 0.00
799 5 0.00
800 8 0.00
802 3 0.00
803 9 0.00
804 15 0.01
805 195 0.08
806 104 0.04
809 3 0.00
810 1 0.00
812 1 0.00
814 1 0.00
815 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (698 bp):
AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACACGAACGA
AGAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTT
TTCACGTTTTTCGAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTGGCC
CCAAACATGGTAGACGTGATCCTTGCATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCACC
CGGCCCCCCGATCATCGGAACCCCAATGCCGCCAGTCAAGTTCTCCGGCGATGGCGCCCCGACAA
AGAAAAATACAGCACCAACACATGCCCGAGACCAGCATGTGCTGACAA
Found at i:18729589 original size:26 final size:26
Alignment explanation
Indices: 18729550--18729602 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18729540 CTGGTCCAAT
18729550 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
*
18729576 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
18729602 C
1 C
18729603 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:18730152 original size:895 final size:890
Alignment explanation
Indices: 18727908--18730470 Score: 3420
Period size: 895 Copynumber: 2.9 Consensus size: 890
18727898 GCCTAGTATG
* * * *
18727908 TGCTACTGCAACCCTCGGTCCACTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCTA
1 TGCTGCTGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAA
* *
18727973 CCGACGATACAAGCGGGAG-GGCGATCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCA
66 CCGACG--A-AA-C--GAGCGG-G--CGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * *
18728037 AGTCGCGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGCC
122 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
* * *
18728102 ATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAACCTTCACGTGAAGTTTCATGGCAAGA
187 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGA
* * * *
18728167 CGACTTGTTTTCTATTTTTCATGATTTTTGAAGCTTTTTACGGTTCGAGATTTTTTAAAATTTTT
252 CGACTAGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * *
18728232 T-TAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGAGATCCTTGTATTTTTTTTGGCATGCAC-A
317 TCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
18728295 AAAAAGTTCAGCTAAAAACTCGAAATGTACAAGATTTTCTGACCATTTGAAAAAGTGTCCCCATT
381 AAAAAG-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATT
* * * * *
18728360 CCAGACACTTTAATGGCTACTGGCAGGAAACCTGTAAAATCTCAAATGTTTTTTAAGGGGATGTG
445 TCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-TGTG
* * * * *
18728425 AGTTCTCGAGGTTTGATGAGGGATAGGTGGCCAATATAATGGCTAAGTACTAGCACCCATCGCAC
509 AGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCAAAGTACCAGCACCCATCACA-
* * * * *
18728490 ATCATGTGCGCACTTCCCTCCGGCCCCCTCGATCGTCGGAACACCAATACCGCCGGTCAGGTTCT
573 ATCATGTGCGCAC-ACCCCCCGGCCCCCTCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCT
* ** * *
18728555 CCGGTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAACACATGCCCGAGGCC
637 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT-CGGCACCAGCACATGCCCGAGCCC
* * * *
18728620 AACATGTACTGTCGCAACCCTCAGTCCGATCCGATCTTAGATTGGGAACGAACTCCGTATGCTTA
701 AACATGTGCTGTCGCAACCCTCAGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTA
* **
18728685 GACTAAGAATGAACTCCATATGCCTAAATCAACCCACGAAACGAACGTGTGGGCACTTAGCCGGC
766 GACTAAGAATGAACTCCATATGCCTAAATCAACCCACGAAACGAACGTGTGGGCACTCAGCCAAC
* *
18728750 CAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCATGTCCCCCTCTGCGTGCTGCTGATCT
831 CAGAGGGGCGGGATGCACAAGCCGGGGATCGACCA-GTCCCCCTCTGCGTGCTGCTGATCC
* * * *
18728811 TGCTG-TCGCAACCCTCGGTCCAGCCT-AACTTAGACTGGGAATGAACTCTGTATTCCTAAGCCA
1 TGCTGCT-GCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGCCA
* * *
18728874 ACCGATGAAACGAGCGGGCGGGTGGGCGGGCATAACGTCAGCCAGAGAGACGGGATGCGCAAGCC
65 ACCGACGAAACGAGCGGGCGGGTGGGC--AC-T-ACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* **
18728939 GTGGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGATATTT
126 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
* * *
18729004 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCACGTGAAGTTTGATGGCAAGATGAC
191 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGAC
* * * *
18729069 TAGTTTTTTATTTTTCACGATTTTGGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
256 TAGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGA
**
18729134 AAGGAGTTTTGTTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAGAAA
321 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA-AAA
* * *
18729199 A-TCAGCTAAAAACTTGAAGTGTACAACATTTTGTGACCATTTG--AAA-TGTCCTCATTTCAGA
385 AGTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGA
* ** *
18729260 CACTTTAATTGCTACTAAAAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGAGTTC
450 CACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GTGTGAGTTC
* *
18729325 TCGAGGTTTGATGAGGGATACGAAGCCAATATAAGGGCAAAGTACCAGCACCCATCACATATCAT
514 TCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCAAAGTACCAGCACCCATCACA-ATCAT
* * *
18729390 GAGCGCACACCCCCCAGGCCCCCTCGATGGTCGAAACCCCAATGCCGCCGGTCTGGTTCTCCGGC
578 GTGCGCACACCCCCC-GGCCCCCTCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
* * * * * *
18729455 GATGCTCTGGCGATGGTGCCCCGACGAAGAAATATGCGGCACTAGCACATGCCTGAGCCCAGCAT
642 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT-CGGCACCAGCACATGCCCGAGCCCAACAT
* * * * * *
18729520 GTGCTATCGCAACCCTCGGTCTGGTCCAATCTTAGACTGCGAATGAACTCCGTATGCTTAGACTG
706 GTGCTGTCGCAACCCTCAGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTA
* * * * * * * *
18729585 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTTGGCGCTCAGCCAACTAGAG
771 AGAATGAACTCCATATGCCTAAATCAACCCACGAAACGAACGTGTGGGCACTCAGCCAACCAGAG
** * *
18729650 GGGCGGGATGCGTAAG-CTGGGATCGACC-G-CCTCTCCTCTGTGTGCTG-TCGATCC
836 GGGCGGGATGCACAAGCCGGGGATCGACCAGTCC-C-CCTCTGCGTGCTGCT-GATCC
* * * *
18729704 TGCTGCTGCAACACTCGATCTAGTCTGATCTTAGATTGGGAATGAACTCCGTATCCCTAAGCCAA
1 TGCTGCTGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAA
18729769 CCGACGAAACGAGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGATC-GGATGCGCAAGCCGTGG
66 CCGACGAAACGAGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGA-CGGGATGCGCAAGCCGTGG
* **
18729833 ATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
*
18729898 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGT
195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTAGT
* * * *
18729963 TTTCTATTTTTCACAATTGTCAAAACTTTTTTA-TGTTCGAGATTTTTTAAAATTTTTTCGAAAG
260 TTTCTATTTTTCACGATTTTCGAAAC-TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAG
* *
18730027 GAGTTTTGGCCCCAAACTTGATAGACGTGATCATTGTATATTTTGTTGGCATGCACAAAAAAAGT
324 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAAGT
18730092 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
388 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACA
*
18730157 CTTTACTGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
452 CTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTC
* * * * *
18730222 GACGTTGGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATGCAC-ATCATGT
516 GAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCAAAGTACCAGCACCCAT-CACAATCATGT
* *
18730286 GCGCACACCCCCTCGGGCCCCC-CTGATCG-CCAGAA-CCCAATGCCGTCGGTCAGGTTCTCCGG
580 GCGCACACCCCC-C-GGCCCCCTC-GATCGTCGA-AACCCCAATGCCGCCGGTCAGGTTCTCCGG
* *
18730348 CGATGCTCCGACGATGGTGCCCCGACGAAGGAAAAATAGGCACCAGCATATGCCCGAGCCCAACA
641 CGATGCTCCGACGATGGTGCCCCGACGAA-GAAAAATCGGCACCAGCACATGCCCGAGCCCAACA
* * * *
18730413 TGTGCTGCCGCAACCCTCAGT-TCGGTCTGATCTTAGATTGGGTATGAACTCCATATGC
705 TGTGCTGTCGCAACCCTCAGTCT-GGTCCGATCTTAGATTGGGAATGAACTCCGTATGC
18730471 CTAAGCTAAC
Statistics
Matches: 1454, Mismatches: 175, Indels: 71
0.86 0.10 0.04
Matches are distributed among these distances:
890 240 0.17
891 69 0.05
892 4 0.00
893 37 0.03
894 229 0.16
895 490 0.34
896 15 0.01
897 3 0.00
898 297 0.20
899 4 0.00
900 5 0.00
902 40 0.03
903 21 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
TGCTGCTGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTAGTT
TTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGAGGCCAATATAAGGGCAAAGTACCAGCACCCATCACAATCATGTGCGCAC
ACCCCCCGGCCCCCTCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCG
ACGATGGTGCCCCGACGAAGAAAAATCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGTCGC
AACCCTCAGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTAAGAATGAACT
CCATATGCCTAAATCAACCCACGAAACGAACGTGTGGGCACTCAGCCAACCAGAGGGGCGGGATG
CACAAGCCGGGGATCGACCAGTCCCCCTCTGCGTGCTGCTGATCC
Found at i:18731172 original size:26 final size:26
Alignment explanation
Indices: 18731143--18731195 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18731133 CCGGTCCGAT
18731143 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18731169 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18731195 C
1 C
18731196 GTAAGTCCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18732089 original size:26 final size:26
Alignment explanation
Indices: 18732051--18732103 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18732041 CCGGTCTAAT
18732051 CTTAGACTAGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
*
18732077 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
18732103 C
1 C
18732104 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:18732236 original size:908 final size:896
Alignment explanation
Indices: 18730417--18735841 Score: 5161
Period size: 908 Copynumber: 6.2 Consensus size: 896
18730407 CCAACATGTG
* * *
18730417 CTGCCGCAACCCTCAGTTCGGTCTGATCTTAGATTGGGTATGAACTCCATATGCCTAAGCTAACC
1 CTGCCGCAACCCTCA-TCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCTAACC
* *
18730482 GACGAAATA-AGTG-GGC---GGGCGGGCACTACGCAGGCCAGAGAGACGGGATGCGCAAGCCGT
65 GACGAAACAGAG-GCGGCGGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * **
18730542 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATCCCAATGATAATTTT
129 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAAT-ACCATTTT
18730607 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
193 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
18730672 -AGTTTTTTATTTTTCACGATTTTGGAAACTTTTTACGGTTTGAGATTTTTT-AAATTTTTTGGG
258 CA-TTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGG
* * * * *
18730735 AAAGTGTTTTTCCCCATACTTGGTAGATGTGATCCTTGTATTTTTTGTTGGCATGCACAAAAAAA
322 AAGGAGTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCAC-AAAAAA
18730800 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTATCCCCATTTCAG
385 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAG--TCCCCATTTCAG
18730864 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
448 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
18730929 CTCGAGGTTTGATTAGGGATAAGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCACACAACA
513 CTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
18730994 TGTGCGCACATCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGG-T-T-C--T
578 TGTGCGCACACCCCCCGGCCCCCC-GATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGAT
** * *
18731054 TCGA-----C---GATGGTGCCCCGATGAAGAAAAAAACTGCACCAGCACATTCCCGAGCCCAGC
642 TCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATACCCGAGCCCAGC
* *
18731111 ATGTGCTGCCGCAACCCTC-AGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
707 ATGTGCTACCGCAACCCTCGA-TCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGA
* * * *
18731175 CTGGGAATGAACTCTGTATGCGTAAGTCCACCCATGAAACGAGCGTGCGGGCACTTAGTCGGCCA
771 CTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCA
* * * * * *
18731240 GAGGGGCGGGATGCGTAAGCCGAGGATCGGTCTGGTTCCCCTCTGCGTGCTGCCGATCCTA
836 GAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCGA
* * * * * *
18731301 CTACCGTAACCCTCGATCTGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCCTCAGCTAATC
1 CTGCCGCAACCCTC-ATCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCTAACC
* *
18731366 GAC-AACACGAGAGGGCGGACGGGTGGGCGGGCACTACGCCGACCAGAGAGACGAGATGCGCAAG
65 GACGAA-AC-AGA-GGCGG-CGGG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * ** * *
18731430 CCGTGGATCGATAGGGTGGTAGGTGAGTTTAGTCACATCTTCATATTTCTATGTGCTAATCCCAT
125 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATACCAT
*
18731495 TTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
190 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
18731560 ACTCATTTTCTA-TTTGCATGATTTACAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTC
255 ACTCATTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTC
18731624 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAA
320 GGAAGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
18731688 ACTTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGA-CATTTGAAAAAAAGTCCCCATTTCAG
384 A-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTCCCCATTTCAG
*
18731752 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCT-TCTTAAGGGGGTGTG-GT
448 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT-TTAAGGGGGTGTGAGT
*
18731815 TCTCGAGGTTTGATGAGGGAT-AGGGGGCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
512 TCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
18731879 ATGTGCGTACACCCCCCGGCCCCCCGATCGTCGAAACCCAAATGCCGCCGGTAAGGTTCTCCGAT
577 ATGTGCGCACACCCCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCC---
* *
18731944 GATGCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCTCA-CACATAA
639 GAT--T----CGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCGGCA-C-CAGCACATAC
* * * ** *
18732008 TCGAGCCCAGCAGGTGCTACCACAACCCTCGATCCGGTCTAATCTTAGACTAGGAATGAACTTCG
696 CCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCG
* * *
18732073 TATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCT
761 TATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACT
* * * * *
18732138 CAGCCGGTCGGAGGGGTGGGATGTGCAAGCTGAGGATCGGCCGGGTCCCCCTCTACGTGCTGCCG
826 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACGTGCTGCCG
18732203 ATCCGA
891 ATCCGA
* * *
18732209 CTGCCGCAACCCTCACTCCGATCTGATCTTAGATTGGGAATGAACTCCGTATGTCTAAGCCAACC
1 CTGCCGCAACCCTCA-TCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCTAACC
* * *
18732274 GACGAAAC-GA-GCGGGCGGGCGGGCGGGCACTACACCGGCCAGAAAGACGGGATGCGCAAGCTG
65 GACGAAACAGAGGC-GGCGGG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
18732337 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTT
128 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATACCATTTT
* *
18732402 TATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACT
193 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
18732467 CGTTTTCTATTTTTCACCATTTTCGAAACTTTTTACAGTTTGGGATTTTTTAAAATTTTTTCGGA
258 CATTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGA
*
18732532 AGGAGTTTTTGCCCGAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-CGAAAACAA
323 AGGAG-TTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAA-AA
** *
18732596 TTCAGCTAAAAACTCGAACAGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
385 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-AGTCCCCATTTCAGA
*
18732661 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTC
449 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
18732726 TCGAGGTTTGATGAGGGATAAGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
514 TCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * ** * *
18732791 GTGAGCACACCCCCCGGCCCCCTGATCACCGAAACCCCAATACCACCGGTCAGGTTCTCCGA--C
579 GTGCGCACACCCCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGATTC
* * * *
18732854 GATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCAT
644 GATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATACCCGAGCCCAGCAT
* * * * *
18732919 GTGCTACCGCAACCCTTGGTCCGATCCGATCTTAAACTAGGAATGAACTCCATATGCTTAGACTG
709 GTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTG
* * *
18732984 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACT-A-----CC-TA-
774 GGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAG
* * * * * * * * * * * *
18733041 ---CGTGCTGC-TAATCC---TA-CTGCC--G-CAACCCTC-A-ATCCAGTCCTATCTTAGA
839 GGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTC-CCCCTCTACGTGCTG-CCGATC--CGA
** * * * * * ** * * ** *
18733090 CTAGGAATG-AACTCTGTAT---GCCTAAGCCAACCGA-T-GAAATGAGCGGGCG---GGC--A-
1 CT--G-CCGCAACCCT-CATCCGGTCTGATCTTA--GATTGGGAATGAAC-TCCGTATGCCTAAG
* * * * ** * ** * *
18733143 CT-A-CGTCG-ACCAGA-GAGACGGGAAGC--GCA--A-GCCGTG-GATCGATA-GGG-TG-G-T
59 CTAACCGACGAAACAGAGGCGGCGGGGGGCGGGCACTACGCCG-GCCAGAGAGACGGGATGCGCA
* * ** ** * * * * *
18733194 AG--GT-GA--GTTTAGGCACATCTTCA--T-ATTTTTGCGCGCCAATAC--CATTTTTATGGCT
123 AGCCGTGGATCG-ATAGG---GTGGT-AGGTGGGTTTAG-GC-AC-AT-CTTCATATTTCT-GCG
** ** * * * * * * * * *
18733249 TGTAAAT-TTA-TATAATGGTCCCT-TAAGCCTTCACGT-GAA-GTTTCATGGCAAGACGACTCG
178 TGCCAATACCATTTTTATGG--CTTGTAA--ATTCA--TACAATGGTCCCT---TA-A-G-C-C-
* ** *** ** *** ** *
18733309 TTCTC-T-ATTTTTCAT-G-ATTTTCGAAAC-TTTT-TACGGTTCA-GATTTTTTAAACTTTTTT
229 TTCACGTGAAGTTTCATGGCA-AGACGACTCATTTTCTATTTTTCACGATTTTCGAAACTTTTTA
* * *
18733367 CGG--TAGG----------A-GTTTT--------G----GCCCCAAACTTGGTAGACGTGATCCC
293 CGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGCCCCAAACTTGGTAGACGTGATCCT
* *
18733407 TGTATTTTTGTTCGCATGCACAAAAGAATTCAGCTAAAAACTCGAAGTGTTCAAGATTTTGTGAC
358 TGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
18733472 CATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACT-GCAGCAAACCTGTAAAA-CT
422 CATTTGAAAAAA-AGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * * *
18733535 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAGTAAAAGGG
486 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGG
* *
18733600 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACATCCCCTCGGCCCCCCCGATCGTCGGAAC
551 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGTCGAAAC
* * * * * ** *
18733665 CCCAATGTCGCAGGTCAAGTTCTTCG--GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
614 CCCAATGCCGCCGGTCAGGTTCTCCGATTCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAAT
* *
18733728 GCGGCACCAGCACATGCCAATGCCCGAGCCCAGCATGTGCTACCACAACCCTTGATCCGGTCCGA
679 GCGGCACCAGCACAT----A--CCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCGGTCCGA
* * *
18733793 TCTTAGACT-GTGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCG-ATGCCTAAGTTAAC
738 TCTTAGACTAG-GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
* * * * * * *
18733856 CAACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCGGGGGATCGGT
802 CCATGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGC
* * * *
18733921 CGGGTCCTCTTCTATGTGTTGCCGATCCTG-
867 CGGGTCCCCCTCTACGTGCTGCCGATCC-GA
* * * * * * *
18733951 CTACCACAACCTTCAGTCCGGTCTGATCTTAGACTGGGAATAAACTCCGTACGCCTAAGCCAACC
1 CTGCCGCAACCCTCA-TCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCTAACC
* * ** *
18734016 GATGAAAC-TA----GC---GGTTGGGCACTACGCCGGCCAGAGAGACCGGATGCGCAAGCCGTG
65 GACGAAACAGAGGCGGCGGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * *
18734073 GATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATACCATTTTTA
* *
18734138 TGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCC
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA
* * ** * *
18734203 TTTTTTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTTATATTATTTT-GGAA
260 TTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATT-TTTTCGGAA
* * *
18734267 GGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGGTGGCATGTACAAAAAAATT
324 GGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATT
* *
18734332 CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
387 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-AGTCCCCATTTCAGACA
* * *
18734397 ATTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTC
451 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
18734462 GAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
516 GAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * *
18734527 GTGCACACCCCTCCGGCCCCCCCGATCGCCGAAACCCGAACGCCGCCGGTCAGGTTCTCC-A-AC
581 GCGCACACCCC-CCGG-CCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGATTC
* * *
18734590 GATGCTCCGGCGATGGTGCCCCGATGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
644 GATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATACCCGAGCCCAGCAT
* *
18734655 GTGCTGCCGCAA-CC-C--T-C-G---G----T---C------TG-A-TCC-AAT-CTTAGACTG
709 GTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTG
* * * * * * *
18734694 GGAATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCATACGGGCGCTCAGCCGGCAAGAG
774 GGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAG
** * * * * *
18734759 GGATGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGAACCTA
839 GGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCGA
* * * ** * * * *
18734817 CTACCACAACTCTCAGTTTGATCTGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAACC
1 CTGCCGCAACCCTCA-TCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCTAACC
* * * ** *
18734882 GACGAAAC-GA-GC-G-GGCGGGCGGGCACTACACCAGCCAGAGAGACAAGATGCGCAAGACGTG
65 GACGAAACAGAGGCGGCGGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
18734943 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCGTATTTCTGCGTGCCAATGCCATTTTTA
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATACCATTTTTA
* * *
18735008 TGGCTTGCAAATTCATGCAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCA
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA
* ** **
18735073 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAAAAG
260 TTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAG
* * *
18735138 GAGTTTT-CGCCCAAACCTGGTAGACGTGATCCTTGCAATTTAT-TTGGCATGCACAAAAGAATT
325 GAGTTTTGC-CCCAAACTTGGTAGACGTGATCCTTG-TATTTTTGTTGGCATGCACAAAA-AATT
* * *
18735201 CAGCTAAAAACTCAAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
387 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-AGTCCCCATTTCAGACA
* *
18735266 CTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTC
451 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
** *
18735331 GAGGTTTGATGAGGGATAAGGGGTAAATACAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
516 GAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
18735396 GCGCACA--------CCCCCCGATCG-CTGGAACCCCAATGCTGTCGGTCAGGTTCTCCG--GCG
581 GCGCACACCCCCCGGCCCCCCGATCGTC-GAAACCCCAATGCCGCCGGTCAGGTTCTCCGATTCG
* * * * * *
18735450 ATGCTCCGGCGATGGTTCCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATG
645 ATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATACCCGAGCCCAGCATG
** * * ** * * *
18735515 TGCTGTCACAACCCTCGGTCCAATCCGTTCTTAGACTAGGAATGAGCTCCGTATGCTTAGATTGG
710 TGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGG
** * * * * **
18735580 GAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTTAGTTGGCCAGAGG
775 GAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGG
* * * * ** * *
18735645 GGCGGGATGCGTAAGCTGAGGATCGGTCGAGTCCCCCTCTGTGTGCTACAGATCCTG-
840 GGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCC-GA
* ** ** * * * * *
18735702 CTACTACAACCCTCGGCCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACT
1 CTGCCGCAACCCTC-ATCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCTAACC
* * * *
18735767 GACGAAAC-GAACGGGCAGGCGGGCGGG-GGGCACTACGTCGGCCAGAGGGGCGGGATGCGTAAG
65 GACGAAACAG-A--GGC-GGCGGG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
18735830 CTGAGGATCGAT
125 CCGTGGATCGAT
18735842 CAGGTCCCCC
Statistics
Matches: 3743, Mismatches: 543, Indels: 502
0.78 0.11 0.10
Matches are distributed among these distances:
837 97 0.03
838 24 0.01
839 205 0.05
840 1 0.00
844 37 0.01
845 84 0.02
850 2 0.00
851 1 0.00
852 4 0.00
853 1 0.00
855 6 0.00
856 3 0.00
857 1 0.00
858 6 0.00
859 119 0.03
860 18 0.00
861 20 0.01
862 32 0.01
863 25 0.01
864 11 0.00
865 52 0.01
866 177 0.05
867 20 0.01
868 29 0.01
869 271 0.07
870 232 0.06
871 18 0.00
872 22 0.01
873 21 0.01
874 12 0.00
875 9 0.00
876 5 0.00
877 1 0.00
878 6 0.00
879 7 0.00
880 18 0.00
881 10 0.00
882 7 0.00
883 17 0.00
884 62 0.02
885 200 0.05
886 70 0.02
887 32 0.01
888 72 0.02
889 14 0.00
890 95 0.03
891 120 0.03
892 158 0.04
893 4 0.00
895 122 0.03
896 25 0.01
897 188 0.05
898 119 0.03
899 42 0.01
904 173 0.05
905 85 0.02
906 57 0.02
907 43 0.01
908 308 0.08
909 29 0.01
910 94 0.03
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (896 bp):
CTGCCGCAACCCTCATCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCTAACCG
ACGAAACAGAGGCGGCGGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATACCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
TTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGG
AGTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGATTCGATGCTC
CGGTGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATACCCGAGCCCAGCATGTGCTAC
CGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGA
ACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGG
ATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCGA
Found at i:18732987 original size:26 final size:26
Alignment explanation
Indices: 18732949--18733001 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18732939 CCGATCCGAT
18732949 CTTAAACTAGGAATGAACTCCATATG
1 CTTAAACTAGGAATGAACTCCATATG
* * *
18732975 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCATATG
18733001 C
1 C
18733002 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCATATG
Found at i:18733354 original size:25 final size:26
Alignment explanation
Indices: 18733319--18733370 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
18733309 TTCTCTATTT
18733319 TTCATGATTTTCGAAACTTTTTACGG
1 TTCATGATTTTCGAAACTTTTTACGG
** *
18733345 TTCA-GATTTTTTAAACTTTTTTCGG
1 TTCATGATTTTCGAAACTTTTTACGG
18733370 T
1 T
18733371 AGGAGTTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.21, C:0.13, G:0.13, T:0.52
Consensus pattern (26 bp):
TTCATGATTTTCGAAACTTTTTACGG
Found at i:18733823 original size:26 final size:25
Alignment explanation
Indices: 18733788--18733845 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
18733778 CTTGATCCGG
*
18733788 TCCGAT-CTTAGACTGTGAATGAAC
1 TCCGATGCTTAGACTGGGAATGAAC
*
18733812 TCCGTATGCTTAGATTGGGAATGAAC
1 TCCG-ATGCTTAGACTGGGAATGAAC
18733838 TCCGATGC
1 TCCGATGC
18733846 CTAAGTTAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 4 0.13
25 6 0.20
26 20 0.67
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (25 bp):
TCCGATGCTTAGACTGGGAATGAAC
Found at i:18735574 original size:26 final size:26
Alignment explanation
Indices: 18735544--18735596 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18735534 CCAATCCGTT
* *
18735544 CTTAGACTAGGAATGAGCTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
18735570 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
18735596 C
1 C
18735597 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18735918 original size:170 final size:170
Alignment explanation
Indices: 18735636--18736010 Score: 655
Period size: 170 Copynumber: 2.2 Consensus size: 170
18735626 GCGCTTAGTT
*
18735636 GGCCAGAGGGGCGGGATGCGTAAGCTGAGGATCGGTCGAGTCCCCCTCTGTGTGCTACAGATCCT
1 GGCCAGAGGGGCGGGATGCGTAAGCTGAGGATCGATCGAGTCCCCCTCTGTGTGCTACAGATCCT
*
18735701 GCTACTACAACCCTCGGCCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
66 GCTACTACAACCCTCGGCCCAGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
*
18735766 TGACGAAACGAACGGGCAGGCGGGCGGGGGGCACTACGTC
131 GGACGAAACGAACGGGCAGGCGGGCGGGGGGCACTACGTC
18735806 GGCCAGAGGGGCGGGATGCGTAAGCTGAGGATCGATC-AGGTCCCCCTCTGTGTGCTACAGATCC
1 GGCCAGAGGGGCGGGATGCGTAAGCTGAGGATCGATCGA-GTCCCCCTCTGTGTGCTACAGATCC
18735870 TGCTACTACAACCCTCGGCCCAGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
65 TGCTACTACAACCCTCGGCCCAGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
*
18735935 CGGACGAAACGAACGGGCAGGCGGGCGGGGGGCACTATGTC
130 CGGACGAAACGAACGGGCAGGCGGGCGGGGGGCACTACGTC
* * * *
18735976 GGCCAGA-GGACGGGATGCGCAAGCCGTGGATCGAT
1 GGCCAGAGGGGCGGGATGCGTAAGCTGAGGATCGAT
18736011 AGGGTGGTAG
Statistics
Matches: 196, Mismatches: 8, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
169 25 0.13
170 171 0.87
ACGTcount: A:0.23, C:0.27, G:0.33, T:0.17
Consensus pattern (170 bp):
GGCCAGAGGGGCGGGATGCGTAAGCTGAGGATCGATCGAGTCCCCCTCTGTGTGCTACAGATCCT
GCTACTACAACCCTCGGCCCAGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
GGACGAAACGAACGGGCAGGCGGGCGGGGGGCACTACGTC
Found at i:18736648 original size:26 final size:26
Alignment explanation
Indices: 18736619--18736671 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18736609 TTGGTCCGAT
*
18736619 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
18736645 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
18736671 C
1 C
18736672 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:18737556 original size:26 final size:26
Alignment explanation
Indices: 18737527--18737605 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
18737517 CTGGTCCGAT
*
18737527 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
18737553 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
18737579 CTTAAACTGGGAATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
18737605 C
1 C
18737606 CTAAGTCATC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:18739384 original size:26 final size:26
Alignment explanation
Indices: 18739355--18739423 Score: 129
Period size: 26 Copynumber: 2.7 Consensus size: 26
18739345 TTTGATCTTT
*
18739355 GACTGGGAATTAACTCCATATGCTTA
1 GACTGGGAATGAACTCCATATGCTTA
18739381 GACTGGGAATGAACTCCATATGCTTA
1 GACTGGGAATGAACTCCATATGCTTA
18739407 GACTGGGAATGAACTCC
1 GACTGGGAATGAACTCC
18739424 GTATACCTAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (26 bp):
GACTGGGAATGAACTCCATATGCTTA
Found at i:18740293 original size:26 final size:26
Alignment explanation
Indices: 18740264--18740326 Score: 108
Period size: 26 Copynumber: 2.4 Consensus size: 26
18740254 GTACTGCCGC
*
18740264 ACTCCGTATGCTTAGACTGGGAATTA
1 ACTCCGTATGCTTAGACTGGGAATGA
18740290 ACTCCGTATGCTTAGACTGGGAATGA
1 ACTCCGTATGCTTAGACTGGGAATGA
*
18740316 ACTCCATATGC
1 ACTCCGTATGC
18740327 CTAAGTCAAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
ACTCCGTATGCTTAGACTGGGAATGA
Found at i:18741208 original size:26 final size:26
Alignment explanation
Indices: 18741179--18741231 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18741169 CCGATCCAAT
* *
18741179 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
*
18741205 CTTAGACTATGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
18741231 C
1 C
18741232 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:18741687 original size:903 final size:893
Alignment explanation
Indices: 18735805--18743954 Score: 9417
Period size: 903 Copynumber: 9.0 Consensus size: 893
18735795 GGCACTACGT
* * * * ** * *
18735805 CGGCCAGAGGGGCGGGATGCGTAAGCTGAGGATC--GATCAGGTCCCCCTCTGTGTGCTACAGAT
1 CGGCCAGAGGGGCGGGATGCGCAAGC-GCGAATCAGGATCGGGTCCCCCTCTACGTGCTGCCGAT
* * * ** * ** *
18735868 CCTGCTACTACAACCCTCGGCCCAGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
65 CCTACTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
18735933 AACGGACGAAACGAACGGGCAGGCGGGCGGG-GGGCACTATGTCGGCCAGAG-GACGGGATGCGC
130 AACCGACG-AA--AA---G-A-GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * ** *
18735996 AAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCCTATTTCTATGTGGCAATGC
187 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
*
18736061 CATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
252 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
** * * *
18736126 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAAATTTTTGCTGTTC-AGGATTTTTTAAAATTT
317 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTT
* * * * *
18736190 TTTCGGAAGGAGTTTTGGCCCAAAACTAGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
381 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACA
* *
18736255 AAAAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCAAT
446 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * * *
18736320 TTTAGACACTTTAAAGGCTACTTGTAGCAATCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
511 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * ** *
18736385 GAGTTCTCGAGGTTTGATGAGGGATTGGGGGCCAAAATAACAGCCAAGTACCAGTACCCATCGCA
576 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
18736450 CATCATGTCCGTACACCCCCCCGTCGGCCCCCCCGATCGTTGGAACCCCAATGTCGCCGGTCAGG
641 CATCATG--CGCACA-CACCCC--CGG-CCCCCCGATCG-TGGAACCCCAATGCCGCCGGTCAGG
*
18736515 TTCTCCGGTGATGCTCCGACGATGGTGCCCCGACA-ATGAAAAATACGGCACCAGCACATGCCCG
699 TTCTCCGGTGATGCTCCGACGATGGTGCCCCGACAGA-GAAAAATGCGGCACCAGCACATGCCCG
* * ** *
18736579 AGCCCAGTATGTGCTGCTGCAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
763 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
18736644 GCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGTTCAG
828 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
18736709 C
893 C
* * * * *
18736710 CGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATC--GATCGGGTCCCACTCTACGTGCTGCCGAG
1 CGGCCAGAGGGGCGGGATGCGCAAG-CGCGAATCAGGATCGGGTCCCCCTCTACGTGCTGCCGAT
* * ** * * * *
18736773 CCTATTGTCGTAACCCTCGTTCTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCC
65 CCTACTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
18736838 AACCTACGAAATGAGCGGGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
130 AACCGACGAAA--A--GAGCGGGC----GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * * * * *
18736903 AAGTCATGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATCTCTGCGTGCCAATGC
187 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* * *
18736968 CATTTTTTTGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCTTGGCAAG
252 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
**
18737033 ACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
317 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * * *
18737098 TTCG-GAGGAGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTTTTGTCATGCACAA
382 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAA
*
18737162 AAAAATTCAGCTAAAAACTCGAAGTGGACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-T
447 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
18737226 TCTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCCCTTTAAGGAGGTGT
512 TC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
18737291 GAGTTCTTGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
576 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
18737356 CATCATGTGCGTACACCCCCCCGTCGGCCCCCCCCCGATCGTCGAAACCCCAATGCCGTCAGTCA
641 CATCA--TGCGCACA-CACCCC--CGG---CCCCCCGATCGT-GGAACCCCAATGCCGCCGGTCA
* * *
18737421 GGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAC-GACGAAAAATGCGGCCCCAACACATGTC
697 GGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACAGA-GAAAAATGCGGCACCAGCACATGCC
* *
18737485 CGAGCCCAGTATGTGCTGTCGCAACCTTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
761 CGAGCCCAGCATGTGCTGCCGCAACC--C--TC-GGTCCGATC-----C---G-AT---CT---T
* * *
18737550 ATGCTTAAACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTTCGTATGCCTAAGTCAT
806 A-G-----ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
18737615 CCCACGAAACAAACGTGAGGGCACTCAGT
865 CCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * ** *
18737644 CGGCCAGAGGGGCAGGATACGTAAGTCGAGGATC--GATCGGGTCCCACTCTATGTGCTATCGAG
1 CGGCCAGAGGGGCGGGATGCGCAAG-CGCGAATCAGGATCGGGTCCCCCTCTACGTGCTGCCGAT
* * * *
18737707 CCTACTGCCACAACCCTCAATCTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCC
65 CCTACTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
18737772 AACCGACGAAACGAGCGGGAGGGCAGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTG
130 AACCGACGAAAAGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * *** *
18737837 TATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTATATTTTTT
195 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
*
18737902 TGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
260 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* ** * *
18737967 TTTTTTATTTTTCTTGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
325 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAG
* * * * ** *
18738032 GTGTTTTGGCCCCATACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCGTAAAAAATTTC
390 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTC
* * * *
18738097 AGCTAAGAACTCAAAGTGTACATGATTTTGTGACCATTTGAAAGAAGTGTCCCCATTTCAGACAC
455 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
18738162 TTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
520 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
18738227 AGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
585 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA--TG
* * * * *
18738292 CGCACACCCCCCCGGTCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAAGTTCTCCGATGATG
648 CGCACACACCCCCGGCCCCCCGATCGT-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATG
* * * *
18738357 CTCCGGCGATGGTGCCCC-ATCAAAGAAAAATGCGGCACCAGCACATGCTCAAGCCCAGCATGTG
712 CTCCGACGATGGTGCCCCGA-CAGAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * * *
18738421 CTGCCGCAACCATCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTGTGCTTAGACTGGGA
776 CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * * *
18738486 ATGAACACCATATGCCTAAATGAACCCATGAAACGAACGTGCGGGCGCTCAGC
841 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * *
18738539 CGATCAGAGGGGCGGGATGCGCAAGCTGGGGATC-GG-TCGAGTCCCCCTCTATGTGCTACCGAT
1 CGGCCAGAGGGGCGGGATGCGCAAGC-GCGAATCAGGATCGGGTCCCCCTCTACGTGCTGCCGAT
* * ** *
18738602 CCTTCTGCCACAACCCTCGATCAGGTTTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCC
65 CCTACTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
18738667 AACCGATGAAATAAACGGGCAGACGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGTGC
130 AACCGACG--A-AAA---G-AG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* *
18738732 AAGCCGTGGATCGATAGGATGGTAGGTGTGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
187 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* *
18738797 CATTTTTATGACTTGTAAATTCATACAATGGTGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
252 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
18738862 ACGACTCGTTTTTTTATTTTTCAGGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTT
317 ACGACTCG-TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
* * * *
18738927 TTTCAAAACGAGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGTATGCACA
381 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACA
* *
18738992 AAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGCCCATTTGAAAAAAGTGTCCCCAT
446 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
18739057 TTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGTGTGT
511 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
18739122 GAGTTCGT-GAGGTTTGATGAGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
576 GAGTTC-TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * **
18739186 ACATCATGTGTGCACAC-CCCCCGGCCCCGCCGATCGCTGGAACCCCAATGCCACCATTCAGGTT
640 ACATCA--TGCGCACACACCCCCGGCCCC-CCGATCG-TGGAACCCCAATGCCGCCGGTCAGGTT
** * * * ** *
18739250 CTCCGACGATGCTCTGGCGATGGTGCCTCGATGGAGAAAAATGCGGCACCAGCACATGCCCGA-A
701 CTCCGGTGATGCTCCGACGATGGTGCCCCGACAGAGAAAAATGCGGCACCAGCACATGCCCGAGC
* *
18739314 CTAGCATGTGCTGCAGCAACCCTCGGTCCAATTTGATCTTTGACTGGGAATTAACTCCATATGCT
766 CCAGCATGTGCTGCCGCAACCCTCGGTCC-----GATC-----C---G------------AT-CT
* *
18739379 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCAC
805 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
** *
18739444 GAAACGTA-CGTGCGGGCTATCAAC
870 GAAACG-AGCGTGCGGGCGCTCAGC
* * * * * * * * ** *
18739468 CGACGAGAGGGGCGGGAAGCGCAAGCTGGGGATC--GACCGGGTCCACCTTTGTGTGCTGCCTAT
1 CGGCCAGAGGGGCGGGATGCGCAAGC-GCGAATCAGGATCGGGTCCCCCTCTACGTGCTGCCGAT
* * ** ** * * *
18739531 CTTGCTATCGTAACCCTCGATCCGGTCCGATCTGAGACTGGGAATGAACTCTGTATGCCTAAACC
65 CCTACTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
18739596 AATCGACGGAACGAGCGGGCGGACGGGCGGACGGGCGAGCAATACGCCGGCCAGAGAGACGGGAT
130 AACCGACGAAAAGAGC--G-GG-C--G-GG-CGGGC-A-C--TACGTCGGCCAGAGAGACGGGAT
* * *
18739661 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTGCTTGCCA
183 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCA
18739726 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
248 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* ** *
18739791 CAAGACGACTCGTCTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAA
313 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA
* * * * * *
18739856 TTTTTTCGAAAGGATTTTTGACCCCAAACTTGGTAGGCATGATCCTTTTATTTTTCTTAGCATGC
378 TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGC
* * *
18739921 ACAAAACATTTCAGCTAAAAACTCGAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
443 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
18739986 CATTTCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGG
508 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
18740051 TGTGAGTTTTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATC
573 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* *
18740116 GCACATCATGTGCGCACAC-CCCCCGGCTCCCCCGATCGTCGGAACACCAATGCCGTCGGTCAGG
638 GCACATCA--TGCGCACACACCCCCGGC-CCCCCGATCGT-GGAACCCCAATGCCGCCGGTCAGG
** * * **
18740180 TTCTCCGGTGATGCTCCGGTGATGGTGCCCCGA-TGAAGAAAAATGTGGCACCAGCACATGCTTG
699 TTCTCCGGTGATGCTCCGACGATGGTGCCCCGACAG-AGAAAAATGCGGCACCAGCACATGCCCG
* * *
18740244 AGCCCAGCATGTACTGCCGC-A--CTCCGT---AT--G--CTTAGACTGGGAATTAACTCCGTAT
763 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
18740299 GCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTTCGAGCGCTCAG
828 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
*
18740364 T
893 C
** * * ** *
18740365 CGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATC-GG-TCGGGTCCCCCTCTGTGTGCTGCTGAT
1 CGGCCAGAGGGGCGGGATGCGCAAG-CGCGAATCAGGATCGGGTCCCCCTCTACGTGCTGCCGAT
* * * * * * *
18740428 CCTGCTTCCACAACCCTTGGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
65 CCTACTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
18740493 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCGGGCACTACATCGACCAGAGAGACGGGAT
130 AACCGACGAAA--A------GAGCGGGC--G--GGCGGGCACTACGTCGGCCAGAGAGACGGGAT
* * *
18740558 GCGTAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACATGCCA
183 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCA
*
18740623 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGG
248 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
18740688 CAAGACGACTCGTCTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTC-AGAATTTTTTAAA
313 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAG-ATTTTTTAAA
* * * *
18740752 ATTTTTTCGAAAGGATTTTTGGCCCTAAACTTGGTAGGCATGATCC-TGTTATTTTTCTTGGCAT
377 ATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG-TATTTTTCTTGGCAT
* * *
18740816 GCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTC
441 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
18740881 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
506 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
18740946 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
571 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* ** * * *
18741011 TCACACATCATGCGTTCACACCTCCGACCCCCCGATCGATGGAACCCCAATGCCACCGGTCAGGT
636 TCGCACATCATGCGCACACACCCCCGGCCCCCCGATCG-TGGAACCCCAATGCCGCCGGTCAGGT
* * * * *
18741076 TCTCCGGTGATGCTCCGACGATGGTACCCCGGCAGAGAAAAATACAGCTCCAGCACATGCCCGAG
700 TCTCCGGTGATGCTCCGACGATGGTGCCCCGACAGAGAAAAATGCGGCACCAGCACATGCCCGAG
* * *
18741141 CCCAGCATGTGCTGTCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGC
765 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
** * * *
18741206 TTAGACTATGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGC
830 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18741270 CGACCAGAGGGGCGGGATGCGCAAGCCGGGCGCAAGCCGAGGATCGGCCAGGTCCCCCTCTGCAT
1 CGGCCAGAGGGGCGGGATGCGCAAG-C--GCG-AA-TC-AGGATC-G---GGTCCCCCTCTACGT
* * * * *
18741335 GCTGTCGATCCTACTGCCATAACCCTCGGTCCGATCCGATCTTAAACT-GGAATGAACTCCGTAT
56 GCTGCCGATCCTACTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
*
18741399 GCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTG
121 GCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
* *
18741464 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
186 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
* *
18741529 CCATTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAA
251 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* ** *
18741594 GACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTT
316 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
* * * * *
18741659 TTTTGAAAGGATTTTTGGCCCCAAACTTGGTATACGTGATCCTTATATTTTTTTTGGCATGCACA
381 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACA
18741724 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
446 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* **
18741789 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAACTGGGTGT
511 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
** *
18741854 GAGTTCGAGAGGTTTGATGAGGGATA-GGGGCAAAATATAAGGGCCAAGTACCAGCACCCATCGC
576 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGC-CAATATAAGGGCCAAGTACCAGCACCCATCGC
* ** ** *
18741918 ACATCATGTGCGCACACCCCTCCCGGCCTTCCGATCACCGGAACCCCAATGCCGCCGGTCAAGTT
640 ACATCA--TGCGCACACACC-CCCGGCCCCCCGATC-GTGGAACCCCAATGCCGCCGGTCAGGTT
** * ** * *
18741983 CTCCGGCAATGCTCCGATGATGGTGCCCCG-GTGAAGAAAAATGTGGCACCAACACATGCCCGAG
701 CTCCGGTGATGCTCCGACGATGGTGCCCCGACAG-AGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * * *
18742047 CCCAGCATGTGCTACCGTAACCCTTGGTCCGATTCGATCTTCGACTGGGAATGAACTCCGCATGC
765 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
* ** * * *
18742112 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAATGTACAGGCTCTCAGC
830 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18742176 CGGCCAGAGGGGCGGGATGTGCAAGC-CGAGGATC-GG-TCGGGTCCCCCTCTGCGTGCTGTCAA
1 CGGCCAGAGGGGCGGGATGCGCAAGCGCGA--ATCAGGATCGGGTCCCCCTCTACGTGCTGCCGA
* * * * * *
18742238 TCCCACTGCCAAAACCAT-TAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGACTAAG
64 TCCTACTGCCACAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * **
18742302 CCAACCGACGAAACGAGCGGACGGGCGGGCCAGCACTACACCGGCCAGAGAGACGGGATGCGCAA
128 CCAACCGACGAAAAGAGCGGGCGGGC-GG---GCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * * **
18742367 GTCATGGATCGATAGGGTGGAAGGTGGGTTTAGGCACATCTTTATATTTCTATGTGCCAATGCCA
189 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
18742432 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
254 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
18742497 GACTCGTTTTCTATTTTTCACCATTTTCGAAACATTTTACGGTTCGAGATTTTTTAAAATTTTTT
319 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * * * * * *
18742562 TGGAAGGAATTTTGGCCCCAAACTTGGTAAACATGATCCTTGTATTTTTGTTGGCACGCACAAAA
384 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAA
* * *
18742627 AAATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACGATTTGAAAAAAGTGTCCCCATTTC
449 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
18742692 AGACA-TGTTAATGGCTACTGGCAACAAACCTATAAAATCCCAAATGCTCTTTAAGGGGGTGTGA
514 AGACACT-TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
18742756 GTTCTCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTGA-CAGCACCCATTGCAC
578 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT-ACCAGCACCCATCGCAC
* * * *
18742820 ATCATGTGCGCACAC-CCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGCCAGTCCGATTCT
642 ATCA--TGCGCACACACCCCCGGCCCCC-CGATCG-TGGAACCCCAATGCCGCCGGTCAGGTTCT
* * *
18742884 CTGGCGATGCTCCGACGATGGTGCCCCGAC-GAAGAAAAATGCGGCACCAACACATGCCCGAGCC
703 CCGGTGATGCTCCGACGATGGTGCCCCGACAG-AGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * *
18742948 CAACATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTTCGTATGCTT
767 CAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
*
18743013 AGACTGGAAATGAACTTCGTATGCTTAGACTAGAAATGAACTCTGTATGCCTAAGTCAACCCATG
832 AGACTGG----G-A------ATG---A-AC------T---C-C-GTATGCCTAAGTCAACCCACG
* *
18743078 AAACGAGCGTGCGGGTGCTCAAC
871 AAACGAGCGTGCGGGCGCTCAGC
* * * * **
18743101 CGGCCAGAGGGGCGGGATGCGTAAGTCGCGGATCA--ATCGGGTCCCCTTCTACGTGCTACTAAT
1 CGGCCAGAGGGGCGGGATGCGCAAG-CGCGAATCAGGATCGGGTCCCCCTCTACGTGCTGCCGAT
* * ** * * *
18743164 CTTGCTATCGCAACCCTTGATCCGGT-CGAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGG
65 CCTACTGCCACAACCCTCGATCCGGTCCG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
18743228 CAACCAACGAAATGAGCGGCGGGTGGGCGGGTGAGCACTACGTCGACCAGAGAGACGGGATGTGC
129 CAACCGACGAAA--AG-AGCGGGCGGGC--G-G-GCACTACGTCGGCCAGAGAGACGGGATGCGC
*
18743293 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTACATGCCAATGC
187 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* * *
18743358 CATTTTTATGTCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
252 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
18743423 ACGACTCGTTTTCTATTTTTCACAATTTTTGAAAC-TTTTACGGTTCGTGATTTTTTAAAATTTT
317 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * *
18743487 TTC-AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTTATGCTTGTATTTTTTTTGGCATGCACA
382 TTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACA
* * *
18743551 AAAAAATTCAGCTAAAAACTAGAAGTGTTCAAGATTTTATGACCATTTGAAAAAAGTGTCCCCAT
446 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
18743616 TTCAGACTCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
511 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
18743681 GAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAATACCAGCTCCCATCGCA
576 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* ** * * *
18743746 CATCATGTGTGCACA-------CCCCCCGATCACTGGAACCCCAATGCTGTCGGTCAGGTTCTCC
641 CATCATGCGCACACACCCCCGGCCCCCCGATC-GTGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** * * * * *
18743804 GACGATGCTCC-AGTGATGGTGCCCCGA-TGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCT
705 GGTGATGCTCCGA-CGATGGTGCCCCGACAG-AGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * *
18743867 AGCATGTGCTGCCGCAACCCTCGGT-CTAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTT
768 AGCATGTGCTGCCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
18743931 AGACTGGGAATGAACTCCGTATGC
832 AGACTGGGAATGAACTCCGTATGC
18743955 TTAGACTGGG
Statistics
Matches: 6294, Mismatches: 739, Indels: 437
0.84 0.10 0.06
Matches are distributed among these distances:
892 6 0.00
893 1 0.00
894 2 0.00
895 348 0.06
896 59 0.01
897 647 0.10
898 17 0.00
899 155 0.02
900 459 0.07
901 26 0.00
902 15 0.00
903 657 0.10
904 392 0.06
905 236 0.04
906 488 0.08
907 204 0.03
908 120 0.02
909 1 0.00
910 4 0.00
911 2 0.00
912 5 0.00
913 10 0.00
914 3 0.00
915 36 0.01
916 58 0.01
917 3 0.00
918 146 0.02
919 5 0.00
920 2 0.00
921 107 0.02
922 7 0.00
923 3 0.00
924 8 0.00
925 150 0.02
926 229 0.04
927 509 0.08
928 200 0.03
929 194 0.03
930 14 0.00
931 4 0.00
932 387 0.06
933 172 0.03
934 203 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
CGGCCAGAGGGGCGGGATGCGCAAGCGCGAATCAGGATCGGGTCCCCCTCTACGTGCTGCCGATC
CTACTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAAAGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGC
ACACACCCCCGGCCCCCCGATCGTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCC
GACGATGGTGCCCCGACAGAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
GCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
Found at i:18743024 original size:26 final size:26
Alignment explanation
Indices: 18742984--18743062 Score: 117
Period size: 26 Copynumber: 3.0 Consensus size: 26
18742974 CTGGTCCGAT
18742984 CTTAGACTAGG-AATGAACTTCGTATG
1 CTTAGACT-GGAAATGAACTTCGTATG
18743010 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTTCGTATG
*
18743036 CTTAGACTAGAAATGAAC-TCTGTATG
1 CTTAGACTGGAAATGAACTTC-GTATG
18743062 C
1 C
18743063 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
25 4 0.08
26 46 0.92
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTTCGTATG
Found at i:18743938 original size:26 final size:26
Alignment explanation
Indices: 18743902--18743977 Score: 143
Period size: 26 Copynumber: 2.9 Consensus size: 26
18743892 CTAGTCTGAT
18743902 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18743928 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18743954 CTTAGACTGGGAATGAACTCCATA
1 CTTAGACTGGGAATGAACTCCATA
18743978 AGCCTAAGTC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18744731 original size:26 final size:26
Alignment explanation
Indices: 18744695--18744747 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18744685 CTGGTCTGAT
* *
18744695 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18744721 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18744747 C
1 C
18744748 CTAAGTCACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18745039 original size:159 final size:158
Alignment explanation
Indices: 18744721--18745148 Score: 418
Period size: 159 Copynumber: 2.7 Consensus size: 158
18744711 ACTCCGTATG
* * * * * ** *
18744721 CTTAGACTGGGAATGAATTCCATATGCCTAAGTC-ACCTCACAAAATGAGTGTGCGGGCACTTAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC-CACGAAACGAGCGTGCAAGCACTCAC
* * *
18744785 CAGGCCAGAGGGCGAGATGCGCAAGCCAGGGATCGATTGGGTTCCCCTTTGCATGCTGTCGATCC
65 CAGGCCAGAGGGCGAGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCATGCTGTCGATCC
* * *
18744850 TACTACCATAACCCTCGGTCTGGTCCGAT
130 TACTACCACAACCCTCGATCTAGTCCGAT
* *
18744879 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAAGCACTCA-C
* * *
18744944 C-GGCCAGAGGG-GCAGGATGCGCAAGTCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGAT
65 CAGGCCAGAGGGCG-A-GATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCATGCTGTCGAT
** * * *
18745007 CCTGTTACCACAGCCCTTC-ATCTATTCTGAT
128 CCTACTACCACAACCC-TCGATCTAGTCCGAT
* * * * *
18745038 CTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGAGCAAGCAGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-A--A-GCACT
* * *
18745103 ACACC-GGCCAGAGAGACGGGATGCGCAAGCC-GTGGATCGATAGGGT
62 -CACCAGGCCAGAG-GGCGAGATGCGCAAGCCAG-GGATCGATCGGGT
18745149 GGTAGGTGGG
Statistics
Matches: 221, Mismatches: 36, Indels: 21
0.79 0.13 0.08
Matches are distributed among these distances:
157 1 0.00
158 60 0.27
159 115 0.52
160 3 0.01
162 2 0.01
163 36 0.16
164 3 0.01
165 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAAGCACTCACC
AGGCCAGAGGGCGAGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCATGCTGTCGATCCT
ACTACCACAACCCTCGATCTAGTCCGAT
Found at i:18745771 original size:26 final size:26
Alignment explanation
Indices: 18745735--18745787 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18745725 CCGGTTTGAT
*
18745735 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18745761 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18745787 C
1 C
18745788 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18746666 original size:26 final size:26
Alignment explanation
Indices: 18746637--18746689 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18746627 CCGGTCTGAT
*
18746637 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18746663 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18746689 C
1 C
18746690 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18747541 original size:26 final size:26
Alignment explanation
Indices: 18747512--18747564 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18747502 CCGGTCCGAT
18747512 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18747538 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18747564 C
1 C
18747565 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18748434 original size:26 final size:26
Alignment explanation
Indices: 18748398--18748450 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18748388 CTGGTCTGAT
*
18748398 CTTAGACTGGGACTGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18748424 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18748450 C
1 C
18748451 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18748931 original size:878 final size:879
Alignment explanation
Indices: 18735878--18761569 Score: 24590
Period size: 878 Copynumber: 28.7 Consensus size: 879
18735868 CCTGCTACTA
* * * * *
18735878 CAACCCTCGGCCCAGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACGGACGAA
1 CAACCCTCAGTCCAGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
18735943 ACGAACGGGCAGGCGGGCGGG-GGGCACTATGTCGGCCAGAG-GACGGGATGCGCAAGCCGTGGA
65 ACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * ** *
18736006 TCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCCTATTTCTATGTGGCAATGCCATTTTTATG
130 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
*
18736071 GCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
** * * * * *
18736136 TTCTATTTTTCACGATTTTCAAAAATTTTTGCTGTTCAGGATTTTTTAAAATTTTTTCGGAAGGA
260 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGA
* * *
18736201 GTTTTGGCCCAAAACTAGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
325 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
18736266 CTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTTAGACACTT
390 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * *
18736331 TAAAGGCTACTTGTAGCAATCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
455 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * ** * *
18736396 GTTTGATGAGGGATTGGGGGCCAAAATAACAGCCAAGTACCAGTACCCATCGCACATCATGTCCG
520 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* ** * *
18736461 TACACCCCCCCGTCGGCCCCCCCGATCGTTGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGTGA
585 --CACACCCCC--CGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-C-----
* *
18736526 TGCTCCGACGATGGTGCCCCGAC-AATGAAAAATACGGCACCAGCACATGCCCGAGCCCAGTATG
640 TG----G-CGATGGTGCCCCGACGAA-GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
18736590 TGCTGCTGCAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGG
699 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* *
18736655 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGTTCAGCCGGCCAGAGG
764 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * *
18736720 GGTGGGATGCGCAAGTCGGGGATCGATCGGGTCCCACTCTACGTGCTGCCGAGCCTATTGTCG
829 GGCGGGATGCGCAAGCCGGGGATCGATCGGGT-CC-C-C--C-T-CTG-CGTG-C---TGTCG
* ** * *
18736783 TAACCCTC-GTTCTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCTACGA
1 CAACCCTCAG-TCCAGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * *
18736847 AATGAGCGGGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCATGG
64 AACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
18736912 ATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATCTCTGCGTGCCAATGCCATTTTTTT
129 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
* *
18736977 GGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
** * *
18737042 TTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG-GAGG
259 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG
* * *
18737106 AGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTTTTGTCATGCACAAAAAAATTCA
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
18737171 GCTAAAAACTCGAAGTGGACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCTAGACAC
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACAC
* * * *
18737235 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCCCTTTAAGGAGGTGTGAGTTCTTG
453 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
18737300 AGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
518 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
18737365 CGTACACCCCCCCGTCGGCCCCCCCCCGATCGTCGAAACCCCAATGCCGTCAGTCAGGTTCTCCG
583 CG--CACACCCCC--CGG--CCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-C-
* * * * *
18737430 GTGATGCTCCGACGATGGTGCCCCGACGACGAAAAATGCGGCCCCAACACATGTCCGAGCCCAGT
640 ----TG----G-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * *
18737495 ATGTGCTGTCGCAACCTTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAAC
696 ATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
18737560 TGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTTCGTATGCCTAAGTCATCCCACGAAAC
761 TGGGAATGAACTCCGTATGC-----C------T-AA----G--T--C--A---A-CCCACGAAAC
* * * * * * * * * * *
18737625 AAACGTGAGGGCACTCAGTCGGCCAGAGGGGCAGGATACGTAAGTCGAGGATCGATCGGGTCCCA
800 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
**
18737690 CTCTATGTGCTATCGAGCCTACTG
865 CTCTGCGTGC--T---G--T-C-G
* ** *
18737714 CCACAACCCTCAATCTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
1 ---CAACCCTCAGTCCAGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * *
18737779 GAAAC--G-A-----GCGGGAGGGCAGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGT
62 GAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * ***
18737836 GTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTATATTTTT
127 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
* *
18737901 TTGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
192 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* ** *
18737966 GTTTTTTATTTTTCTTGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
257 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAA
* * * ** *
18738031 GGTGTTTTGGCCCCATACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCGTAAAAAATTT
322 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * *
18738096 CAGCTAAGAACTCAAAGTGTACATGATTTTGTGACCATTTGAAAGAAGTGTCCCCATTTCAGACA
387 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
18738161 CTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
452 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
18738226 GAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
517 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
18738291 GCGCACACCCCCCCGG-TCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAAGTTCTCCGATGA
582 GCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTC-AG------G-T--
* * * *
18738355 TGCTCCGGCGATGGTGCCCC-ATCAAAGAAAAATGCGGCACCAGCACATGCTCAAGCCCAGCATG
636 T-CTCTGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
18738419 TGCTGCCGCAACCATCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTGTGCTTAGACTGG
699 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * * **
18738484 GAATGAACACCATATGCCTAAATGAACCCATGAAACGAACGTGCGGGCGCTCAGCCGATCAGAGG
764 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * **
18738549 GGCGGGATGCGCAAGCTGGGGATCGGTCGAGTCCCCCTCTATGTGCTACCGATCCTTCTG
829 GGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCT---G-----TC-G
* *
18738609 CCACAACCCTC-GAT-CAGGTTTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCG
1 ---CAACCCTCAG-TCCA-G-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* ** * * * * * * *
18738672 ATGAAATAAACGGGCAGACGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGTGCAAGCC
60 ACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
18738737 GTGGATCGATAGGATGGTAGGTGTGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
125 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
* *
18738802 TTATGACTTGTAAATTCATACAATGGTGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
190 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * ** *
18738867 TCGTTTTTTTATTTTTCAGGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCA
255 TCG-TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * *
18738932 AAACGAGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGTATGCACAAAAAA
319 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
18738997 AATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGCCCATTTGAAAAAAGTGTCCCCATTTCAG
384 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
18739062 ACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTT
449 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
18739127 CGT-GAGGTTTGATGAGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
514 C-TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
18739191 ATGTGTGCACACCCCCCGGCCCCGCCGATCGCTGGAACCCCAATGCCACCATTCAGGTTCTCCGA
578 ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATG---CC-GTC-GG---T-C-A
* * * * * * *
18739256 CGATGCTCTGGCGATGGTGCCTCGATGGAGAAAAATGCGGCACCAGCACATGCCCGA-ACTAGCA
633 -GGTTCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* *
18739320 TGTGCTGCAGCAACCCTCGGTCCAATTTGATCTTTGACTGGGAATTAACTCCATATGCTTAGACT
697 TGTGCTGCCGCAACCCTC-G--------G-----T--CT-GG-------TCC-GAT-CTTAGACT
* *
18739385 GGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAACG
736 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
** * * * * * * *
18739450 TA-CGTGCGGGCTATCAACCGACGAGAGGGGCGGGAAGCGCAAGCTGGGGATCGACCGGGTCCAC
801 -AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
* *
18739514 CTTTGTGTGCTGCCTATCTTG
865 CTCTGCGTGCTG----TC--G
* * * * *
18739535 CTATCGTAACCCTC-GATCCGGTCCGATCTGAGACTGGGAATGAACTCTGTATGCCTAAACCAAT
1 ----C--AACCCTCAG-TCCAGT-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
18739599 CGACGGAACGAGCGGGCGGACGGGCGGACGGGCGAGCAATACGCCGGCCAGAGAGACGGGATGCG
58 CGACGAAACGAGCAGGCGGGCGGGCGGGCGGGC-A-C--TACGCCGGCCAGAGAGACGGGATGCG
* *
18739664 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTGCTTGCCAATG
119 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
18739729 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
184 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* **
18739794 GACGACTCGTCTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
249 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * * * * * *
18739859 TTTCGAAAGGATTTTTGACCCCAAACTTGGTAGGCATGATCCTTTTATTTTTCTTAGCATGCACA
314 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
18739924 AAACATTTCAGCTAAAAACTCGAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
379 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
18739989 TTCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGT
444 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
18740054 GAGTTTTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCA
509 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
18740119 CATCATGTGCGCACACCCCCCGGCTCCCCCGATCGTCGGAACACCAATGCCGTCGGTCAGGTTCT
574 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * **
18740184 CCGGTGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTTGAGCCC
639 -C--TG--G---C---GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *
18740249 AGCATGTACTGCCGC-A--CTC---C--GT---ATGCTTAGACTGGGAATTAACTCCGTATGCTT
693 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGAT-CTTAGACTGGGAATGAACTCCGTATGCTT
* * * * *
18740303 AGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTTCGAGCGCTCAGTCGG
757 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
** *
18740368 CCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCTGATCCTGC
822 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTC----TGC-G-TG---CTG-
*
18740433 TTCCA
877 -T-CG
** *
18740438 CAACCCTTGGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCCAGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* ** * * *
18740503 ACGAGCGGGCGGGCGGGCGGGCAGGCGGGCACTACATCGACCAGAGAGACGGGATGCGTAAGCTG
65 ACGAGCAGGCGGGCGGGC--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
18740568 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACATGCCAATGCCATTTT
126 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
*
18740633 TATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
191 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
18740698 CGTCTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGAATTTTTTAAAATTTTTTCGAA
256 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAA
* * * * * *
18740763 AGGATTTTTGGCCCTAAACTTGGTAGGCATGATCC-TGTTATTTTTCTTGGCATGCACAAAACAA
321 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG-TATTTTTGTTGGCATGCACAAAAAAA
* *
18740827 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGA
385 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
18740892 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
450 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
18740957 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
515 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* ** * * ** **
18741022 GCGTTCACA-CCTCC-GACCCCCCGATCGATGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTG
580 GTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-C----
* * * * *
18741085 ATGCTCCGACGATGGTACCCCGGC-AGAGAAAAATACAGCTCCAGCACATGCCCGAGCCCAGCAT
640 -TG----G-CGATGGTGCCCCGACGA-AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * * *
18741149 GTGCTGTCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
698 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * *
18741214 TGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCCGACCAGAG
763 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
*
18741279 GGGCGGGATGCGCAAGCCGGGCGCAAGCCGAGGATCGGCCAGGTCCCCCTCTGCATGCTGTCGAT
828 GGGCGGGATGCGCAAGCCGGG-G--A-TC---GATC-G---GGTCCCCCTCTGC--G-TG-C--T
*
18741344 CCTACTG
876 -GT-C-G
* *
18741351 CCATAACCCTCGGTCC-GATCCGATCTTAAACT-GGAATGAACTCCGTATGCCTAAGCCAACCGA
1 -C--AACCCTCAGTCCAG-T-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* *
18741414 CGAAA--AG-A-----GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCG
61 CGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
18741471 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
126 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* *
18741536 TATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACT
191 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** * * *
18741601 CATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAA
256 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAA
* * * *
18741666 AGGATTTTTGGCCCCAAACTTGGTATACGTGATCCTTATATTTTTTTTGGCATGCACAAAAAAAT
321 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
18741731 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
386 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* ** *
18741796 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAACTGGGTGTGAGTTCG
451 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
18741861 AGAGGTTTGATGAGGGATA-GGGGCAAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
516 CGAGGTTTGATGAGGGATAGGGGGC-CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
** * * *
18741925 GTGCGCACACCCCTCCCGG-CCTTCCGATCACCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGG
580 GTGCGCACA-CCC-CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT----
* ** * *
18741989 CAATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCA
639 C--TG----G-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * * * *
18742054 TGTGCTACCGTAACCCTTGGTCCGATTCGATCTTCGACTGGGAATGAACTCCGCATGCTTAGACT
697 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* ** * * *
18742119 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAATGTACAGGCTCTCAGCCGGCCAGA
762 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * *
18742184 GGGGCGGGATGTGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCAATCCCACTG
827 GGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTG----T----C-G
* * *
18742246 CCAAAACCATTAGTCC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAACCGA
1 -C--AACCCTCAGTCCAG-T-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * *
18742310 CGAAACGAGC-GGACGGGCGGGC---C-AGCACTACACCGGCCAGAGAGACGGGATGCGCAAGTC
61 CGAAACGAGCAGG-CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * **
18742370 ATGGATCGATAGGGTGGAAGGTGGGTTTAGGCACATCTTTATATTTCTATGTGCCAATGCCATTT
125 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
18742435 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
190 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * * *
18742500 TCGTTTTCTATTTTTCACCATTTTCGAAACATTTTACGGTTCGAGATTTTTTAAAATTTTTTTGG
255 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA
* * * *
18742565 AAGGAATTTTGGCCCCAAACTTGGTAAACATGATCCTTGTATTTTTGTTGGCACGCACAAAAAAA
320 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
18742630 TTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACGATTTGAAAAAAGTGTCCCCATTTCAGA
385 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
18742695 CA-TGTTAATGGCTACTGGCAACAAACCTATAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTT
450 CACT-TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
18742759 CTCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTGA-CAGCACCCATTGCACATC
514 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT-ACCAGCACCCATCGCACATC
* * * * *
18742823 ATGTGCGCACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGCCAGTCCGATTCTCTGG
578 ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAG-GT-TCT--
* *
18742888 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAACA
639 C--TG----G-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* *
18742953 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACT
697 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
*
18743018 GGAAATGAACTTCGTATGCTTAGACTAGAAATGAACTCTGTATGCCTAAGTCAACCCATGAAACG
762 GG----G-A------ATG---A-AC------T---C-C-GTATGCCTAAGTCAACCCACGAAACG
* * * * * *
18743083 AGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGTAAGTCGCGGATCAATCGGGTCCCCT
801 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCC-
* *
18743148 TCTACGTGCTACTAATCTTGCTATCG
865 -CT-C-TG--------CGTGCTGTCG
* * * *
18743174 CAACCCT-TGATCCGGTCGAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCAACGA
1 CAACCCTCAG-TCCAGTCG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * * * *
18743238 AATGAGC-GGCGGGTGGGCGGGTGAGCACTACGTCGACCAGAGAGACGGGATGTGCAAGCCGTGG
64 AACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
18743302 ATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTACATGCCAATGCCATTTTTAT
129 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
* * *
18743367 GTCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *
18743432 TTTCTATTTTTCACAATTTTTGAAAC-TTTTACGGTTCGTGATTTTTTAAAATTTTTTC-AGAAG
259 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAG
* * *
18743495 GAGTTTTGGCCCCAAACTTGGTAGACGTTATGCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
323 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * * *
18743560 AGCTAAAAACTAGAAGTGTTCAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACTC
388 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
18743625 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
453 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
18743690 AGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAATACCAGCTCCCATCGCACATCATGTG
518 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
18743755 TGCACA---------CCCCCCGATCACTGGAACCCCAATGCTGTCGGTCAGGTTCTCCGACGATG
583 CGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT----C--TG
* * * * *
18743811 CTCCAGTGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCTAGCATGTGC
642 -----GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
18743876 TGCCGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAA
702 TGCCGCAACCCTCGGTCT-G---G-TC-----C-------G--------AT-CTTAGACTGGGAA
* *
18743941 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCATAAGCCTAAGTCAACCCACGAAACGAGCGT
741 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* *
18744006 GCGGGCGCTCAGCCGGCCAGAGAGCGGACGGGCGGGTGGGCACTAGCCCCGTCAGAGAGA-CAAG
806 GCGGGCGCTCAGCCGGCCAGAG-G-GG-C--G-GGATGCGCA--AG--CCG---G-G-GATC--G
* * * *
18744070 AT-GGG-CAAGCCGT-GGATCGATAG-GGT-G
854 ATCGGGTC--CCCCTCTG--CG-T-GCTGTCG
** ** ** ** * * *** * **
18744097 GTA-GGTTGGTTTAGGTAC-ATCTTCATATTTCTGCGTGCCAATG-CCATTTTTATGCCT-TGTA
1 CAACCCTCAGTCCA-GT-CGATCTT-AGA---CTG-G-G--AATGAAC-TCCGTATGCCTAAGCC
* ** ** * *** ** ** * ** * * *
18744158 AATTCGTA-GAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTAT
55 AA-CCG-ACGAAACG-AGC---AGGC-GGGCG-GGCG-GGC-GGGCACTACG-C-CG---GCCA-
***** **** ** * * ** * *** ** *** *
18744222 TTTTCACCATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTG
104 GAGAGACGGGATGCGCAA------GCCG-T-G-GA---TCGATAGGGTGGT-AGGTGG-GTTTAG
* ** * * * * * *
18744287 GC-C--C--CAAACTTGGTAGACGTGATCC-TTG-TATTTTTGTTGGCATGCACAA---A-AAAA
155 GCACATCTTCATA-TTTCT-G-CGTG--CCAATGCCATTTTT-ATGGCTTGTA-AATTCATACAA
* * ** * * * **** ** *
18744341 T--TCAGCTAAAAAC-TCGAAGTGTACAAGATTT--T-G--TGACCA-T--TTGAAAAAAGTGTC
213 TGGTC-CCTTAAGCCTTC-ACGTG---AAG-TTTCATGGCAAGACGACTCGTT-TTCTATTTTTC
* * ** * * * * *** * *
18744395 CCCATTTCAGACAC-TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT-TAAA
271 ACGATTTTTGAAACTTTTTACGG-TTC-GG--G--ATTTTTTAAAAT-T----T--T-TTCGAAA
* * * * * ** * * **** * * ** * *
18744458 GG-GGTGTGAGTTCTCGAGGTTTG-ATGAAG-GATAGGGGGCCAATATAAG--GGCCAAGTACCA
322 GGAGTTTTG-G-CCCCAAACTTGGTA-GACGTGAT-CCTTG--TATTTTTGTTGG-CATGCA-CA
* *** * ** * ****** * * ** *
18744518 GCACCCA-TC-GC---ATA-TCAGGCGTGCACACCCCCCAGCCCCCCTGATCGTCGGAACCCCAA
379 -AAAAAATTCAGCTAAAAACTC-GAAGTGTACA------AGATTTTGTGACCATTTGAA---AAA
* * ** * * * * * *
18744577 TGCCGTCAGTCAGGTTCTCCAG-CGATGCTCTGGTGATGG-TGCCCCGACGAAG-AGAA-ATGTG
433 AG-TGTC-CCCA--TT-T-CAGAC-A--CT-T--TAATGGCT--ACTG--GCAGCA-AACCTGTA
** * * * **** *** *** * * **** *
18744638 GCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCCCAACCCTCAGTCTGGTCTGATCTTAGATT
481 AAATC-TCAAATGCTC--TTTAAGGGGGTG-TG----AGTTCTC-G--AGGTTTGATGAGGGATA
**** * * ** ** * * ** *
18744703 GGGAATGAACTCCGT-A-TGCTTAG-ACTGGGA---AT-G-A-ATTCCATATGC-CTA-AGTCAC
535 GGGGGCCAA-T--ATAAGGGCCAAGTACCAGCACCCATCGCACA-T-CATGTGCGC-ACACCCCC
* ***** * * * * * * * * *
18744757 C-TCACAAAATGAGT-GTGCGG--GCAC-TTACC--AGGCCAGAG------GGCGA-GATG-CGC
594 CGGC-CCCCCCGA-TCG-CCGGAACCCCAATGCCGTCGGTCAG-GTTCTCTGGCGATGGTGCCCC
* * * ** * ** * ** * * * * * **
18744807 AAGCCAGGGATCGATTG-GGTTCC--C-CTTTGCATGCTG-TC-G-ATCCTACTACCATAACCCT
655 GA-CGA-AGA-AAAATGCGGCACCAGCAC-ATGCCCG-AGCCCAGCAT-GTGCTGCCGCAACCCT
18744865 CGGTCTGGTCCGATCTTAGACTGGGAAT-----------G---A-AC------T---CT--GTAT
714 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
** *
18744904 GCCTAAGTCAACCCACGAAACGAGCGTGCAAGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
779 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * *
18744969 TCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTG
844 CCGGGGATCGATCGGGTCCCCCTCTGCGTGC--T-G-T-C-G
* * *
18745011 TTACCACAGCCCTTCA-TCTATTCTGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAAC
1 ----CA-A-CCC-TCAGTCCAGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* ** * *
18745075 CGACGAAAC-A--A-----GCGAGCAAGCAGGCACTACACCGGCCAGAGAGACGGGATGCGCAAG
58 CGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
18745132 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
123 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* * *
18745197 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTGACT-GAAAGAC
188 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA-TGGCAAGAC
* * *
18745261 GACTCGTTTTCTATTTTTCACGA-TTTTGAAAACTTTTTACGATTCGAGATTTTTTTAAATTTTT
252 GACTCGTTTTCTATTTTTCACGATTTTTG-AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * * *
18745325 TCGGAAGAATTTTTGGCCCCAAACTTGGAAGACGTGATCCTTTTATTTTTTTTGGCATGCACAAA
316 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
18745390 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTT
381 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
18745455 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGA
446 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
18745520 GTTCTCAAGGTTTGATGAGAGATAGGGGG-CAATATAAGGGCCCAGTATCAGCACCCATCGCACA
511 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * *
18745584 TCATGTGTGCACAGCCCCCGGCACCCCCGATAGCCGGAA-CCCAAAGCCGTCGGTTAGGTTCTCC
576 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCT
** * *
18745648 GATGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGTATGTGCTGCC
641 GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* ** * *
18745713 GCAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAGTGAA
706 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * * *
18745778 CTCCGTATGCCTAAGTCAAACCATGAAACGAGC-TCCGGGCACTCAGCTGGCCAGAGGGGCAGGA
771 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* **
18745842 TGCGTAAGCCGGAAATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCG
836 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGC--G-T---G---CTG-T--CG
* * * *
18745898 CAACCCTCAGTCCAGTTTGATCTTAGACTGGAAATGAACTTCGTATGCCTAAGCCAATCGACGAA
1 CAACCCTCAGTCCAG-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * * * * * * * *
18745963 ACGAGCGGGAGGACAGGCAGGCAGGCACTACGTCTGCCAAAGAGACGGGATACGCAAGCCATTGA
65 ACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * ** * *
18746028 TCGATAGGTTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTATGAGCCAATGCCTTTTTTATG
130 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
* * * *
18746093 GCTTGTAAATTCATACAATGGTCCCTTAACCCTTCACATGAAGTTTCTTGGCAAGATGACTCGTT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
** * * * * *
18746158 TTCTATTTTTCACGATTTTCAAAACTTTTTGCGGCTCAGGATTTTTTAAAATTTTTTGGGAAGGA
260 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGA
* * *
18746223 GTTTTGACCCCAAACTTGGTATACGTGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAG
325 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
18746288 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
390 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
18746353 TAATGGCTACTGGCAGCAAACCTGCAAAATGTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
455 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * *
18746418 GATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATGGCATATCATGTGTG
520 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* *
18746483 CACACCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGTCGTCGGTCAAGTTCTCCGACAATGC
585 CACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTC-AGGT-T----C--T-C
* * * * *
18746547 TCCGGTGATCGTGCCCCGATGAAGAAAAATACGGCACTAGCACATGCCCGAGCCCAGCATGTGCT
640 T--GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * *
18746612 GCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAAT
703 GCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * *
18746677 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCAAAGCGGCG
768 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
** * * * ** * *
18746742 GGATATGCAAACCAGGGATTGGCCGAGTCCCCCTCTGTGTGCTG-C-
833 GGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCG
* * * * * * * * * ** *
18746787 CGATCCTACTGT-CA--CAACCCTCAGTCT--G-ATCCAAACT---TA-GACT--GGGAA-TGA-
1 CAACCCT-CAGTCCAGTCGA-TCTTAGACTGGGAAT--GAACTCCGTATGCCTAAGCCAACCGAC
* * * * *** * * * *
18746838 -ACACCA-TATGCAAACGAGCAGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGTCGT
62 GAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * * * *
18746901 GGATCGATAGGGTGGTAGGAGGCTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTCTT
127 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
* * *
18746966 ATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACCC
192 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * ** * * *
18747031 ATTTTCTATTTTTCATGATTTTCAAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGGAA
257 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAA
* * *
18747096 GGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCCCAAAAAAATT
322 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
18747161 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACA
387 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
18747226 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTCTGAGTTCTC
452 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
18747291 AAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
517 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * *
18747356 GCGCATACCCCCC-GACCCCGCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAAT
582 GCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT----C--T
* * * * * *
18747420 GCTCCGACGATGGTGCCCCAATGAAGAAAAATACGACACCAGCACATGCCTGAGCCCAGCATTTG
641 G----G-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * *
18747485 CTGTCGGAACCC-CTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
701 CTGCCGCAACCCTC-GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* *
18747549 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCATCCGGCCAGAGGG
765 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * ** * *
18747614 GTGGGATGCGTAAGCTAGGGATCGGTCGGGTCCCCCTCTGCATCCTACCGATCTTGCTGCCG
830 GCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTG--------CG----TGCTGTCG
* * * * *
18747676 TAACCCT-TGAT-CTGATCTGATCTTAGACTGGGAATGAATTTCGTATGCCTAAGCCAACCGACG
1 CAACCCTCAG-TCCAG-TC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* **
18747739 AAAC--G-A-GCGGGCGGGCGGCCGGGCACTACGCCGGCCAGAGAGACGGGATGCATAAGCCGTG
63 AAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
18747800 GATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTA
128 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
* * *
18747865 TGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTGCACGTGAAGTTTCATGGCAAGACGACTTG
193 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
** * *
18747930 TTTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
258 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAG
*** * *
18747995 GAGTTTTTATCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTC
323 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
18748060 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACAC
388 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
18748125 TTTAATGACTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
453 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
18748190 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCGCACATCATGTG
518 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
18748255 CACACACCCCCCGGCCCCCCCAATC-CCAGAA-CCCAATGCCGTCAGTCAGGTTCTCTGGCGATG
583 CGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATG
* *
18748318 GTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCC
648 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * * * *
18748383 TCAGTCTGGTCTGATCTTAGACTGGGACTGAACTCCATATGCTTAGATTGGGAATGAACTCCGTA
713 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * **
18748448 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCAGCCAGAGGGGCAGGATGCATAA
778 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* *
18748513 GTCGGGGATCGATCGGGTTCCCCTCTGCGTGCTGTCG
843 GCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCG
* * *
18748550 CAACCCTCAGTCCAGTCCATTCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
1 CAACCCTCAGTCCAGTCGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * *
18748615 ATGAGCAGGCGGGCGGGCGGGCGGGCACAACGTCGGCCAAAGAGATGGGATGCGTAAGCCGTGGA
65 ACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
18748680 TTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATTCCAATTTTT-T
130 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC-ATTTTTAT
* * * * *
18748744 GCCTTGTAAATTCTTATAATGGACCCTTAAGCCTACACGTGAAGTTTCATGGCAAGACGACTCGT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *
18748809 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTAGAAAGG
259 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG
* *
18748874 GGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *
18748939 GCTAAAAACACGAAGTGTACAAGATTTTATGACCGTTTGAAAAAAGTGTCCCCATTTTAGACACT
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
18749004 TTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
18749069 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGT
519 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* *
18749134 GCACA----CC--CCCTCCCGATCGCCGGAACCCCAATGCGACCGGTCAGGTTCTCCAGCGATGC
584 GCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAAT--G-CC-GTC-GG---T-CAG-G-TTC
* * * * *
18749193 TCCGGCGATGGTACCCCGACGAAGACAAATGCAGCACCAGCACATGCCCGAGCCCAGCACGTGCT
638 TCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
** * *
18749258 ATCGTAA--C-C-ATC--G---G-TC-----C---G---G---TCCG-AT-CTTAGACTGGGAAT
703 GCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * *
18749297 GAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTCAGTCGGCCAGAGGTGCG
768 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * *
18749362 AGATGCACAAGCCAGGGATCGGTCAGGTCCCACTCTGCATGCTGTCGATCCTGCTACCG
833 GGATGCGCAAGCCGGGGATCGATCGGGTCCC-C-CT-C-TGC-GT-G---CTG-T--CG
* * * * * *
18749421 TAACACTCAGTCCAATCCGATCTTAGATTGGGAATGAACTCCGTACGCCTAAGCGAACCGACGAA
1 CAACCCTCAGTCCAGT-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
18749486 AC--G-A-GCGGGCGGGC-GG-GGGCA-TAACGCCGGCCAGAGAGGCGGGATGCACAAGCCATGG
65 ACGAGCAGGCGGGCGGGCGGGCGGGCACT-ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
18749544 ATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
129 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
* * * * *
18749609 GGCTTGTAAATTCATACAATGGTCCATTAAGCTTTGACGTGAAGTTTCATGGCAGGACGACTCAT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
18749674 TTTTTATTTTTCACGATTTTTGAAACTTTTTACGATTTGAGA-TTTTTAAAATTTTTTCGGAAGG
259 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG
* *
18749738 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATTCACAAAAAAATTCA
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
18749803 GCTAAAAACTCAAAGTGTA-AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
18749867 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
18749932 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATGGCACATCATGTGC
519 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * * *
18749997 GCACACCCCCCCTCGGCCCCCCCAATCGCCGGAACCCAAATGCCGTTGGTCA-GTTCTCCGACAA
584 GCACA--CCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGA
* * * * *
18750061 AGATGCCCCGACGAAGAAAAATGCAAG-ACCAGCACATGCTCGAGCCGAGCATGTGCTGCCGCAA
646 TGGTGCCCCGACGAAGAAAAATGC-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* ** * * *
18750125 CCTTCACTCTGGACCGATCTTAGACTGGGAATGAACTCCGTAAGCCTAGACTGGGAATGAACTCC
710 CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
** * * *
18750190 GTATGCCTAAGTCAACCCACGAAATAAGCGTACGGGCGCTCAGCCGGGCAGAGGGACGGGATGCG
775 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * *
18750255 TAAGCCGGGGATC-AGCCGGGTCCCCCTCTACATGCTGTCAATCCTACTATTG
840 CAAGCCGGGGATCGA-TCGGGTCCCCCTCTGC--G-TG-C--T-GT-C----G
* * * * *
18750307 CAACCCTCAATCCAGTCTGATCTTAGATTCGAAATGAACTCCGTATGCCTAAGCCAACCGATGAA
1 CAACCCTCAGTCCAGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
18750372 ACGAGCGGGCGGGCGGGCGGACGGGCACTACGTCGGCCAAAGAGATGGGATGCGCAAGCCGTGGA
65 ACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
18750437 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAATTTTT-T
130 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC-ATTTTTAT
* * *
18750501 GGCTTGTAAATTCTTACAATGGTCCCTTAAGCCTACACGTGAAGTTTCATGGCAAGGCGACTCGT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * ** *
18750566 TTTTTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGAAAGG
259 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG
* * *
18750631 AGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCATAAAAAAATTC
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTC
* * * * *
18750696 AGCTAAAAACACGAAGTGTACAACATTTTATAACCATTTGAAAAAAGTATCCCCATTTCAGACAC
388 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
18750761 TTTAATTGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCG
453 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
18750826 AGGTTTGATGAGGGAT-GGGGCGCCAATATAAGGGCCAAGTACCAGCACCCATGGCACATCATGT
518 AGGTTTGATGAGGGATAGGGG-GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * *
18750890 GCGCACACCCCCCCGGCGCCCCCCCGATCGTCGAAACCCCAATACCGTCGATAAGGTTTTTCGAT
582 GCGCACA-CCCCCC-G-GCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG-TTCTC--T
* * * *
18750955 GATGCTCCGGTAATGGTGCCCCGATGAAGACAAATGCAGCACCAGCACATGCCCGAGCCCAGTAT
641 G--G---C-G--ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * *
18751020 GTGCTACCACAACCCTTGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTG
698 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * * *
18751085 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGAGCGCCCAACTGGCCAGAG
763 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * *
18751150 GGGTGGGATGCGCAATCCGGGGATCGACCAGGTGCCCCTCTGTGTCCTGTCGATCCTG-CTG
828 GGGCGGGATGCGCAAGCCGGGGATCGATCGGGT-CCCC-C----T-CTG-CG-TGCTGTC-G
*
18751211 CATTAACCCTCAGCTCGA-TCTGATCTCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
1 C---AACCCTCAG-TCCAGTC-GATCT-TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * * *
18751275 ACGAAACGAGCGGGTGGGCGGGCAGGCGGGCACTACGTCGACCAAAGAGACGGGATGTGCAAGCC
60 ACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
18751340 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATG-C----
125 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
* * *
18751400 ------C----AAATTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTGATGGCAAGGCGAC
190 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** *
18751455 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGG
255 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA
*
18751520 AAGTAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
320 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
18751585 TTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
385 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
18751650 CACTTTAATGGCAACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTG
450 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
18751715 TCAAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
515 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
18751780 GTGCGCACGCCCCCCCGGCCCCCCCGATCACTGGAACCCCAAT-CCGCCGGTCAGGTTCTCTGGC
580 GTGCGCAC-ACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG---T-T--C
* * * *
18751844 GATGCTCGGGCGATGGTGCCCCGGCGATGAAAAATGCGGCACCAGCACATGCCCGAGTCCAGTAT
638 --T-CT--GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* *
18751909 GTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
698 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * * *
18751974 GGAATGAACTCTGTATACCTAAGTCAA-CCACGAAACAAGTGTGCGGGTGCTCAGCCAGCCAGAG
763 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * *
18752038 GGGCAGGATGTGTAAGCCGGGGATCGACCGAGTCCCCCTCTGCGTGTAGTCGATCCTGCTGTCG
828 GGGCGGGATGCGCAAGCCGGGGATCGATCGGGT-CCCC-CT-C---T-G-CG----TGCTGTCG
* * * *
18752102 CATCCCTC-GATCCAGTCCAATCTTACACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGA
1 CAACCCTCAG-TCCAGT-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* *
18752166 AACGAGCA----GGCGGGCGGGCGGGCACGACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
64 AACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
18752227 ATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATATCTGCGTGCCAATGCCATTTTTAT
129 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
* *
18752292 GGCTTTTAAATTCATACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
18752357 TTTCTATTTTTCATGATTTTTGAAAATTTTTACGGTTCGAGATTTTTTTAAATTTTTTCGGAAGG
259 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG
* * * * * *
18752422 A-TTTTATGCCCCAAACATGGTGGACGTGATCCTTGTATTTTTGATAGCATGTACAAAAAAATTC
324 AGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * * * *
18752486 AGCTCAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTTAAACAC
388 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
18752551 TTTAATGGCTACTAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGTGTGAGTTCTT
453 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTC
* *
18752616 GAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATGGCACATCATGT
517 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
18752681 GCGCATACCCCCCGGCCCCCCCGATCGCTGGAACCCAAATGCCGTCGGTCAAGTTTTTCGACGTG
582 GCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTC-AG--GTT---C-T-
* * * *
18752746 CTCCGACGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAACATGTGC
639 CT--GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * * * *
18752811 TGCCGCAGCCCTCAGTCCGATCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTAGGAA
702 TGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* *
18752876 TGATCTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
767 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * *
18752941 GGGATGCGCAAGCTGGGGATCGACCGGGACCTCCTCTACGTGCTGTCTATCCTGCTGCTG
832 GGGATGCGCAAGCCGGGGATCGATCGGGTCC-CC-CT-C-TGC-G----TGCTG-T-C-G
* *** * *
18753001 CAACCCTCGGTTGGGTCTGATCTTAGACTGGGAATGAAGTCCGTATGCCTAAGCCAACAGACGAA
1 CAACCCTCAGTCCAGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
18753066 ACGAGCGGGTGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGTTG-AAGCCGTGG
65 ACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG-CGCAAGCCGTGG
* *
18753130 ATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
129 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
*
18753195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
18753260 TTTC------T----A----T----CTTTTTACGG-TCAGGATTTTTTAAAATTTTTTAGAATGG
259 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG
* *
18753306 TGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCA
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
18753371 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACT
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
18753436 TTAACGGCTACAGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
18753501 GGTTTGATGAGGGATAGGGGGCCAATATAA-GGTCAAGTACCAGCACCCATCGCACATCATGTGC
519 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* ** *** * **
18753565 GCACACCGCCCCCCGACCCCCCCGATCGTTGGAACCCCAATGCTACCGGTCAGGTTCTCCGATGA
584 GCACA---CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGA
* * * * **
18753630 TGGTGCCCCGACAAAGAAAAATGCGGCCCCAGCACATGCTCGAGCCCAGCATTTGCTATCGCAAC
646 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* ** * *
18753695 GCTCGGTCTAATCCGATCTTAGACTTGGAATGAACTCCGTATGCTTAGACTGGGAACGAACT-CG
711 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * * * * * **
18753759 TACGCCTAAGTCAACCCATGGAACGAACGTGCGGGCACTCAGCCGGCTACAAGGGCGGGATGCAT
776 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* *
18753824 AAGCCGGGGATCGATCAGGTCCCTCTCTGCGTGCTACCGATTCTACTGCTG
841 AAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCT---G-------T-C-G
** ** *
18753875 CAACCCTTGGTCGGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCCAG-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
18753940 ACGAGCGGGCAGGCGGGCGGGCGGGCGGGCAATACGCCGGCCAGAAAGACAGGATGCGTAAGCCG
65 ACGA----GCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
18754005 TGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCCTCCA-ATTTCTGCATGCCAATGCCATTT
126 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT-CTTCATATTTCTGCGTGCCAATGCCATTT
18754069 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
190 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * ** * *
18754134 CCGTTTTCTATTTTTCATGATTTTTTAAACTTTTTGGGGTTTGGGATTTTTTAAAATTTTTTCGG
255 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA
* ** *
18754199 AAGGGGCGTTGGCCCCAAACTTGGTAGACATGATCCTTGTATATTTT-TTGGCATGCACAAAAAA
320 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAA
* * ** *
18754263 ATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCATCCCAATTTCAG
384 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
18754328 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
449 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
18754393 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATGA
514 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
** *
18754458 TGTGCGCACACCCCCCTCGG-CCCCCTAATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTTCG
579 TGTGCGCACA-CCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC-T--
** * * * *
18754522 GCGATGCTCCGACGATGGTGCCCCGGTGATGAAAAATGTGGCACCAACACATGCCTGAGCCCCA-
639 -C--TG----G-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG-CCCAG
*
18754586 CATGTGCTGCCACAA-CC-C--TC--G---G---TT---C-------G-A-TCCG-AT-CTTAGA
695 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * * * *
18754625 TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACAGGCGCTCAGCCAGCTA
760 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * *
18754690 GAGGGGCGGGATACGCAAGCC-GAGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGC
825 GAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT--CCC-C--C-T-CTG-CG----TGCTGT
18754754 CG
878 CG
* ** *
18754756 CAACCCT-TGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGA
1 CAACCCTCAG-TCCAGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * * * * **
18754820 AACGAACGGGCGGGTGGGCGGACGAGCACTACGTCGACCAGAGAGACGGGATGCATAAGCCGTGG
64 AACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
18754885 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGGGCCAATGCCATTTTGT-
129 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT-TA
* * *
18754949 TGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCA
193 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
** * *
18755014 TTTTCTATTTTTCACGA-TTTCAAAACTTTTTACGGTTCGGGATTTTTTCAAATTTTTTCGAAAA
258 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAG
* * * * * *
18755078 GAGTTTTGGCGCCAAACTTGGTAGGCATGATCCTTGTATTTTGGTTGGCATGCATAAAACAATTC
323 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
18755143 AGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTATCCCCATTTCAGACAC
388 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
18755208 TTTAATGGCTACTGGCCGCAAACCTGTAAAATCTCCAATGCTCTTTAAGGGGGGTGTGAGTTCTC
453 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTC
* * *
18755273 GAGGTTTGATGAGGGATA-GGGGCCACTATAAGGGCCAAGTACCAGCACTCATCGGACATCATGT
517 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * *
18755337 GTGCACAACCCCCCAGGCCCCCCCGATCGTCGAAACCCTAATGCCGCCGGTCAGGTTCTCCAGCG
582 GCGCAC-ACCCCCC-GGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG-T-T----C-
* * * * * *
18755402 ATGCTCCGGCGATGGTGCCCTGATGAAGAAGAATGCGGCACTAGGACATGCTCGAGCCCAGCATG
638 -T-CT--GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * *
18755467 TGCTGTCGTAACCCTCGGT-TCGGTCCGATCTTAGAATGAGAATGAACTCCGTATGCTTAGACTA
699 TGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * *
18755531 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGTCGGCCAGTG
763 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * * *
18755596 GGGTGAGATGCGCAAGTCGGGGATCGACCGGGTCTCCTTCTACGTGCTGTCGATCCTGCTGCCA
828 GGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC-CC--C--C-T-CTG-CG----TGCTGTCG
* *** * *
18755660 CAACCCTTAGTCC-GATCCGATCTTAGACTCATAATGAACTCCGTATGCCTAAGCCATCTGACGA
1 CAACCCTCAGTCCAG-T-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
18755724 AATGAGCA------------GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTCG
64 AACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
18755777 ATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTTATATTTCTACGTGCCAATGCCATTTTTAT
129 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
** *
18755842 GGCAGGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * **
18755907 TTGCTATTTTTTACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTTAATTTTTTCGCAAA-
259 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG-AAAG
* * * * *
18755971 GAGTTTTAGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTATTTGCATGCAAAAAAAAATTC
323 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
18756036 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAGAAAGCGTCCCCATTTCAGACAC
388 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
18756101 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCG
453 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
18756166 AGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
518 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *
18756231 CGCACACCCCCCGGCCCCCCCGATTGCCAGAACCCCAATGCCGCCGG-CTAGGTTCTCCAGCGAT
583 CGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTC-AGG-T-T----C--T
* * *
18756295 GCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGACACTAGCACATGCCCGAGCCCAGCATGTG
639 -CT--GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * *
18756360 CTGCTGCAACCCTCGGTCTGGTCCAATATTAGACTGAGAATGAACTCCGTATACTTAGACTGGGA
701 CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
** * * *
18756425 ATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGACGGG
766 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * *
18756490 CGGGATGCGCAAGCCAGGGATCGACCGAGTCCCCTTTTGTGTGCTACCGATGCTGCTGCCA
831 CGGGATGCGCAAGCCGGGGATCGATCGGGTCCCC------CT-CT-GCG-TGCTG-T--CG
** * **
18756551 CAACCCTC-GATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTATACTGGGAATGAA
1 CAACCCTCAG-TCCAGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTA-A----G--CCAA
* * * * *** * ** ** * * *
18756615 CTCCGTATGTCTAAGTCAACCTA--CGAAATGAGCATGCGGGTGCT-CAACCGGCCAGAGCGTCG
57 --CCG-A---CGAA-ACGAGC-AGGCG-GGCGGGCGGGCGGGCACTAC-GCCGGCCAGAGAGACG
* * * * * *
18756677 AGATGCGCAAGTCG-GG-T-GAT----CGATA---GGG--T---C-C-CCCTC-TA----T--GT
112 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGT
*
18756718 GCCAATCCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
177 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * * *
18756783 ATGGCAAAACGACTCATTTTTTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTT
242 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
* * *
18756848 AAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGC
307 AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * * *
18756913 ATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGAGTTTGTAACCATTTGAAAAAAGTG
372 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
18756978 TCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
437 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
18757043 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGAGCCAAGTACCAGCACC
502 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * * *
18757108 CATGGCACATCATGTCCGCACAACCCCC-GACCCTCCGATCGTCGGAACCCCAATGCCGTCGGTC
567 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTC
* * * *
18757172 AGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGTACCAGCACATGCCCGAGCCCAGTA
632 AGGTTCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * *
18757237 TGTGCTGCCACAACCCTCAGTCTGATCCAATCATAGACTGGGAATGAACTTCGTATGCTTAGACT
697 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
18757302 GAGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAAA
762 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * *
18757367 GGGGTGGGATGCACAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCG
827 GGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCG
* *
18757420 CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCCAGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * * *
18757485 ACGAGCGGGCGGGCAGGCGTGCAGGCACCACGCAGGCCAGAGAGACGGGATGCGCAAGCTGTGGA
65 ACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
18757550 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATT
130 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
*
18757615 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
18757680 TTCTATTTTTCACGATTTTCGAAAC-CTTTAGCGGTTCTGGATTTTTTAAAATTTTTTCAGAAA-
260 TTCTATTTTTCACGATTTTTGAAACTTTTTA-CGGTTCGGGATTTTTTAAAATTTTTTC-GAAAG
** * *
18757743 GAGTTTTGGAACCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTC
323 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
18757808 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTCAGACAC
388 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
18757873 TTTAATGGCTACTGGCAGCAAACCTGTAAATTCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCG
453 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
18757937 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCACGTACCAGTACCCATCGCACATCATGTG
518 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
*** **
18758002 CGCACACCCCCCGG-CCCCCCGATCATTGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATG
583 CGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATG
* * * **
18758066 GTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGTATGTGCTGATGCAACCC
648 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * * *
18758131 TCGGTCCGATCCGATCATAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTA
713 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * ** * *
18758196 TGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACTAGCCAAAAGGGCGGGATGCGCAA
778 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * *
18758261 GCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCT-ACTG
843 GCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTC-G
* ** * * * *
18758298 CAACCCTCGGTCTGGTATGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCGAACCAACGAA
1 CAACCCTCAGTCCAGT-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
18758363 ACGAGC-GGGGGGACGGGCGGGCAGGCACCACGCAGGCCAGAGAGACGGGATGCGCAAGCCGTGG
65 ACGAGCAGGCGGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
18758427 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACATGCCAATGCCATTTTTAT
129 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
* * * *
18758492 TGCTTGTAAATTCATACAATGGTCCCTTAAGTCTTCACTTGAAGTTTCACGGCAAGACGACTCGT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* ** * * * *
18758557 TTTCTATTTTTCATGATTTTCAAAACTTTTTACTGTTTGGGATTTTTTAAAATATTTTCGAAAAG
259 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG
* ** ** *
18758622 AGTTCTGGCATCAAACTTATTAGACGTGATCCTTGTATTTTCT-TTAGCATGCACAAAAAAATTC
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT-TGTTGGCATGCACAAAAAAATTC
* *
18758686 AGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAAGTGTCCCCATTTCAGACA
388 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-GAAAAAAGTGTCCCCATTTCAGACA
* *
18758751 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATATGAAATGCTCTTTAAGGGGGTGTGAGTTCTC
452 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
18758816 GAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
517 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* ** *
18758881 GCGCACA-CCCCCGG--CCCCCTATCG-CGGAACCCCAATGCCACCGGTTAGGTTCTCTGACGAT
582 GCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG-T-TCT--C--T
* *
18758942 GCTCCAGCGATGTTGCCCCGACGAAGAAAAATTCGGCACCAGCACATGCCCGAGCCCAGCATGTG
641 G-----GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* *
18759007 CTATACCGCAA--------C----CC--TC--AGTCT--G---G---TCCG-AT-CTTAGACTGG
701 C--TGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
18759046 GAATGAACTCCGTATGCCTAAGTCAACCCGCGAAACGAGCGTGCAGGCACTCAGCCAGCCAGAGG
764 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * ** *
18759111 GGCGCGATGCACAAGCTGAGGATCGGCCGGGTCCCCCTCTATGTGCTACCGATCCTGCTATCG
829 GGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTC----TG----CG----TGCTGTCG
* * *
18759174 CAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCCAGT-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
18759239 AC-A--A-GTGGGCGGGCGTGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTTGG
65 ACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG-TGG
* * *
18759300 -TCGATAGGGTGGTTGGTAGGTTTAGTCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
129 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
18759364 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *
18759429 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGAAAGG
259 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG
* * *
18759494 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT-TAATTTTTTTTGGCATGCAAAAAAAAATTT
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTC
* * *
18759558 AGCTAAAAACTCGAAGTGTACAAGATGTTATGACCATTTGAAAAAAAATGTCCCCATTTCAGACA
388 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACA
*
18759623 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTC
452 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
18759688 GAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGT
517 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
** * * ** *
18759753 GCGCACACCGCCCCGGCCCCCCCGATCATCGGAACCCAAATGCCGTCGATCAGGTTCTCCAGTGA
582 GCGCACACC-CCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGA
* ** * * * *
18759818 TGGTGGCCCGACGAAGAAAAATGCAACACCAGCATATGCCTGACCCCAGCATGTGCTACCGCAAC
646 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * * * *
18759883 CCTCGATCCGGTCCGATCTTAGACTGGGAATTAACACCGTATGCTTAGACTGGGAATGAACTTCG
711 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* *
18759948 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGTA-GGG-GGGATGCG
776 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG-AGGGGCGGGATGCG
* * * *
18760011 TAAGCCGAGGATC-AGCTGGGTCCCCCTCTGTATGCTGTCGATCCTGTTGTCA
840 CAAGCCGGGGATCGATC-GGGTCCCCCTC----TGC-GT-G---C---TGTCG
* * *
18760063 CAACTCTCAGTCC-GATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCAACGA
1 CAACCCTCAGTCCAG-T-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
18760127 AAC--G-A---------GCGGACGGGTACTACGCGGGCCAGAGAGACGGGATGCGCAAGCCATTG
64 AACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC-GTG
* * *
18760180 G-TCGATAGGGTGGTTGGTAGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
128 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
18760244 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
193 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
18760309 TTTTCTATTTTTCACGATTTTTGAAAACTTTTGT--GGTTCGGGATTTTTTTAAAATTTTTTC-A
258 TTTTCTATTTTTCACGATTTTTG-AAACTTTT-TACGGTTCGGGA-TTTTTTAAAATTTTTTCGA
* * *
18760371 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTTTTGGTATGCACAAAAAA
320 -AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
18760436 ATTCAGCTAAAAACTCAAAGTGTACAAGAGTTTGTGACCATTTGAAAAAAGTGTCCCAATTTTAG
384 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
18760501 ACACTTTAATGGCTACTGACAGCAAAGCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGTGAGTT
449 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
18760566 CTCGAGGTTTGATAAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
514 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
18760631 TGTGCGCACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCTGTCAGGTTCTCCGGC
579 TGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGC
* * *
18760696 GATGCTCCGGTGATAGTGCCCCGACGAAAAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCAT
644 GA--------TG---GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * *
18760761 GTTCTGCCGCAACCCTCGGTCAAGTTTC-ATCTTAGACTGAGAATGAACTCCGTATGCTTAGACT
698 GTGCTGCCGCAACCCTCGGTC-TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* ** * * *
18760825 GGGAATGAACTCTGTATGCCTAAGTCAACTTACGAAACGAGTGTGCGGGCGCTCAGTCGGGCAGA
762 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
** * *
18760890 GGGGCGGGATGCGCAAGTTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTA
827 GGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCT---G----T-C-G
* * * * *
18760952 CTATAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCATATGCCTAAACCAACCGAC
1 C---AACCCTCAGTCCAGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * **
18761017 GGAAC--G-A-GCGGGCGGGCGGGCGGGCACTATGCCGGCTAGAGAGACGGGATGCACAATTCGT
62 GAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* ** *
18761078 GGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCACTTTT
127 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
18761143 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
192 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
18761208 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTAAGGTTTGGGATTTTTTAAAATTTTTTCGAAA
257 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAA
* *
18761273 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT-TAATTTTTTTTGGCATGCAAAAAAAAAT
322 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAAT
* * *
18761337 TCAACTAAAAACTCGAAGTGTACAAGATGTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGAC
386 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
18761402 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCT
451 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
** * * * *
18761467 CGAGGTTTGATGAGGGATAGGGGGCC-----AAGCACC-AGCACCCATCGCACATCGCACATCAT
516 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAGCACCCATCGCACATCAT
* *
18761526 GTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCAAATGC
580 GTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
18761570 TGTCCATCCT
Statistics
Matches: 20792, Mismatches: 2808, Indels: 2385
0.80 0.11 0.09
Matches are distributed among these distances:
837 1 0.00
838 1 0.00
839 5 0.00
840 5 0.00
841 14 0.00
843 2 0.00
844 15 0.00
845 13 0.00
846 4 0.00
847 1 0.00
848 6 0.00
849 5 0.00
851 13 0.00
852 9 0.00
853 11 0.00
854 11 0.00
855 44 0.00
856 47 0.00
857 5 0.00
858 3 0.00
859 101 0.00
860 67 0.00
861 10 0.00
862 6 0.00
863 180 0.01
864 223 0.01
865 191 0.01
866 58 0.00
867 16 0.00
868 20 0.00
869 57 0.00
870 20 0.00
871 70 0.00
872 525 0.03
873 30 0.00
874 238 0.01
875 367 0.02
876 801 0.04
877 368 0.02
878 1405 0.07
879 414 0.02
880 161 0.01
881 758 0.04
882 281 0.01
883 185 0.01
884 204 0.01
885 133 0.01
886 363 0.02
887 74 0.00
888 158 0.01
889 667 0.03
890 180 0.01
891 489 0.02
892 748 0.04
893 863 0.04
894 119 0.01
895 476 0.02
896 105 0.01
897 928 0.04
898 984 0.05
899 623 0.03
900 658 0.03
901 29 0.00
902 161 0.01
903 960 0.05
904 475 0.02
905 194 0.01
906 502 0.02
907 451 0.02
908 346 0.02
909 13 0.00
910 14 0.00
911 6 0.00
912 13 0.00
913 33 0.00
914 14 0.00
915 41 0.00
916 37 0.00
917 40 0.00
918 153 0.01
919 17 0.00
920 12 0.00
921 162 0.01
922 15 0.00
923 18 0.00
924 30 0.00
925 191 0.01
926 244 0.01
927 525 0.03
928 199 0.01
929 213 0.01
930 27 0.00
931 7 0.00
932 375 0.02
933 181 0.01
934 127 0.01
935 3 0.00
936 3 0.00
937 8 0.00
939 7 0.00
940 2 0.00
941 1 0.00
943 2 0.00
944 36 0.00
945 7 0.00
950 2 0.00
951 36 0.00
952 6 0.00
953 10 0.00
954 13 0.00
955 9 0.00
956 3 0.00
957 25 0.00
958 16 0.00
959 11 0.00
960 1 0.00
962 2 0.00
963 12 0.00
964 9 0.00
965 16 0.00
966 6 0.00
967 8 0.00
968 2 0.00
969 10 0.00
972 5 0.00
973 4 0.00
974 2 0.00
976 5 0.00
977 21 0.00
978 10 0.00
979 5 0.00
980 11 0.00
981 4 0.00
982 1 0.00
983 5 0.00
984 2 0.00
985 7 0.00
986 13 0.00
988 5 0.00
989 2 0.00
990 1 0.00
991 4 0.00
992 7 0.00
993 6 0.00
994 1 0.00
996 24 0.00
997 5 0.00
998 3 0.00
999 3 0.00
1000 3 0.00
1001 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (879 bp):
CAACCCTCAGTCCAGTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGGTG
CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
GGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCG
Found at i:18750174 original size:26 final size:26
Alignment explanation
Indices: 18750145--18750198 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
18750135 GGACCGATCT
18750145 TAGACTGGGAATGAACTCCGTAAGCC
1 TAGACTGGGAATGAACTCCGTAAGCC
*
18750171 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTAAGCC
18750197 TA
1 TA
18750199 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTAAGCC
Found at i:18751079 original size:26 final size:26
Alignment explanation
Indices: 18751050--18751102 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18751040 CCGGTCCGAT
18751050 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
18751076 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18751102 C
1 C
18751103 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:18751769 original size:892 final size:888
Alignment explanation
Indices: 18735805--18743954 Score: 8669
Period size: 897 Copynumber: 9.0 Consensus size: 888
18735795 GGCACTACGT
* * * * * * *
18735805 CGGCCAGAGGGGCGGGATGCGTAAGCTGAGGATCGATCAGGTCCCCCTCTGTGTGCT-ACAGATC
1 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTC-GATC
* ** * * *
18735869 CTGCTAC-TACAACCCTCGGCCCAGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
65 CTGCTGCAT-CAACCCTCGATCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
18735933 AACGGACGAAACGAACGGGCAGGCGGGCGGGGGGCACTATGTCGGCCAGAG-GACGGGATGCGCA
128 AACCGACGAAACGAGCGGGCGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
18735997 AGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCCTATTTCTATGTGGCAATGCC
193 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
18736062 ATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
258 -------T--C---TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * * * *
18736127 CGACTCGTTTTCTATTTTTCACGATTTTCAAAAATTTTTGCTGTTCAGGATTTTTTAAAATTTTT
311 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
18736192 TCGGAAGGAGTTTTGGCCCAAAACTAGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
376 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
18736257 AAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCAATTT
441 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * *
18736322 TAGACACTTTAAAGGCTACTTGTAGCAATCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
506 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * ** *
18736387 GTTCTCGAGGTTTGATGAGGGATTGGGGGCCAAAATAACAGCCAAGTACCAGTACCCATCGCACA
571 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
18736452 TCATGTCCGTACACCCCCCCGTCGGCCCCCCCGATCGTTGGAACCCCAATGTCGCCGGTCAGGTT
636 TCATGTGCG--CACACCCCC--CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
** * *
18736517 CTCCGGTGATGCTCCGACGATGGTGCCCCGAC-AATGAAAAATACGGCACCAGCACATGCCCGAG
697 CT-CGACGATGCTCCGGCGATGGTGCCCCGACGAA-GAAAAATGCGGCACCAGCACATGCCCGAG
* * **
18736581 CCCAGTATGTGCTGCTGCAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
760 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
18736646 TTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGTTCAGC
825 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * * * * *
18736710 CGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGATCGGGTCCCACTCTACGTGCTGCCGAGCC
1 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
** * * * *
18736775 TATTGTCGT-AACCCTCGTTCTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCA
66 TGCTG-CATCAACCCTCGATC-GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
18736839 ACCTACGAAATGAGCGGGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
129 ACCGACGAAACGAGCGGGCGGGCGGG-CGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * *
18736904 AGTCATGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATCTCTGCGTGCCAATGCC
193 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
* *
18736969 ATTTTTTTGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGA
258 -------T--C---TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
18737034 CGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
311 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
18737099 TCGG-AGGAGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTTTTGTCATGCACAAA
376 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18737163 AAAATTCAGCTAAAAACTCGAAGTGGACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TT
441 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
18737227 CTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCCCTTTAAGGAGGTGTG
506 C-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
18737292 AGTTCTTGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
570 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
18737357 ATCATGTGCGTACACCCCCCCGTCGGCCCCCCCCCGATCGTCGAAACCCCAATGCCGTCAGTCAG
635 ATCATGTGCG--CACACCCCC--CGG--CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
** * * * * *
18737422 GTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGACGAAAAATGCGGCCCCAACACATGTCCG
694 GTTCT-CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * *
18737487 AGCCCAGTATGTGCTGTCGCAACCTTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
758 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
*
18737552 GCTTAAACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTTCGTATGCCTAAGTCATCC
823 GCTTAGACTGGGAATGAACTCCGTATGC-----C------T-AA----G--T--C--A---A-CC
* * * * **
18737617 CACGAAACAAACGTGAGGGCACTCAGT
862 CACGAAACGAGCGTGCGGGCGCTCAAC
* * * * * * * ** * *
18737644 CGGCCAGAGGGGCAGGATACGTAAGTCGAGGATCGATCGGGTCCCACTCTATGTGCTATCGAGCC
1 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
18737709 TACTGCCA-CAACCCTCAATCTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCA
66 TGCTG-CATCAACCCTCGATC-GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
18737773 ACCGACGAAACGA----GC-GG-GAG-GGCAGGCACTACGCCGGCCAAAGAGACGGGATGCGCAA
129 ACCGACGAAACGAGCGGGCGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
18737831 GCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTATA
194 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC----A-A
*
18737896 TTTTTTTGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
254 ------TGCC-TCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
18737961 GACTCGTTTTTTATTTTTCTTGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
312 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * **
18738026 CGGAAGGTGTTTTGGCCCCATACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCGTAAAA
377 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * *
18738091 AATTTCAGCTAAGAACTCAAAGTGTACATGATTTTGTGACCATTTGAAAGAAGTGTCCCCATTTC
442 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
18738156 AGACACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
507 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
18738221 TTCTTGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
572 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
18738286 CATGTGCGCACACCCCCCCGG-TCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAAGTTCTCC
637 CATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C
* * * *
18738350 GATGATGCTCCGGCGATGGTGCCCC-ATCAAAGAAAAATGCGGCACCAGCACATGCTCAAGCCCA
700 GACGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * *
18738414 GCATGTGCTGCCGCAACCATCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTGTGCTTAG
764 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * * *
18738479 ACTGGGAATGAACACCATATGCCTAAATGAACCCATGAAACGAACGTGCGGGCGCTCAGC
829 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
** * ** * ** **
18738539 CGATCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGAGTCCCCCTCTATGTGCTACCGATCC
1 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
18738604 TTCTGCCA-CAACCCTCGATCAGGTTTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
66 TGCTG-CATCAACCCTCGATC-GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * * * * * *
18738668 ACCGATGAAATAAACGGGCAGACGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGTGCA
129 ACCGACGAAACGAGCGGGCGGGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
18738733 AGCCGTGGATCGATAGGATGGTAGGTGTGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
193 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
*
18738798 ATTTTTATGACTTGTAAATTCATACAATGGTGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
258 -------T--C---TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * **
18738863 CGACTCGTTTTTTTATTTTTCAGGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTT
311 CGACTCG-TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
** * * * *
18738928 TTCAAAACGAGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGTATGCACAA
375 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
18738993 AAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGCCCATTTGAAAAAAGTGTCCCCATT
440 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18739058 TCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTG
505 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
18739123 AGTTCGT-GAGGTTTGATGAGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
570 AGTTC-TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * ** **
18739187 CATCATGTGTGCACACCCCCCGGCCCCGCCGATCG-CTGGAACCCCAATGCCACCATTCAGGTTC
634 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTC
* * * * *
18739251 TCCGACGATGCTCTGGCGATGGTGCCTCGATGGAGAAAAATGCGGCACCAGCACATGCCCGA-AC
698 T-CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
18739315 TAGCATGTGCTGCAGCAACCCTCGGTCCAATTTGATCTTTGACTGGGAATTAACTCCATATGCTT
762 CAGCATGTGCTGCCGCAACCCTC-G--------G-TC-----C--GG-------TCC-GAT-CTT
* *
18739380 AGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACG
801 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
**
18739445 AAACGTA-CGTGCGGGCTATCAAC
866 AAACG-AGCGTGCGGGCGCTCAAC
* * * * * * * * * *
18739468 CGACGAGAGGGGCGGGAAGCGCAAGCTGGGGATCGACCGGGTCCACCTTTGTGTGCTGCCTATCT
1 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * *
18739533 TGCT--ATCGTAACCCTCGATCCGGTCCGATCTGAGACTGGGAATGAACTCTGTATGCCTAAACC
66 TGCTGCATC--AACCCTCGAT-CGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
18739596 AATCGACGGAACGAGCGGGCGGACGGGCGGACGGGCGAGCAATACGCCGGCCAGAGAGACGGGAT
128 AACCGACGAAACGAGCGGGCGGGCGGGCGG-CGGGC-A-C--TACGCCGGCCAGAGAGACGGGAT
* * *
18739661 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTGCTTGCCA
188 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCA
18739726 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
253 ATGCC-------T--C---TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * **
18739791 CAAGACGACTCGTCTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAA
306 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
* * * * * * * *
18739856 TTTTTTCGAAAGGATTTTTGACCCCAAACTTGGTAGGCATGATCCTTTTATTTTTCTTAGCATGC
371 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * *
18739921 ACAAAACATTTCAGCTAAAAACTCGAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
436 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
18739986 CATTTCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGG
501 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
18740051 TGTGAGTTTTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATC
566 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* *
18740116 GCACATCATGTGCGCACACCCCCCGGCTCCCCCGATCGTCGGAACACCAATGCCGTCGGTCAGGT
631 GCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
** * * * **
18740181 TCTCCGGTGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTTGAG
696 TCT-CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* *
18740246 CCCAGCATGTACTGCCGC-A----C--TCC-GT---ATGCTTAGACTGGGAATTAACTCCGTATG
760 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT-CTTAGACTGGGAATGAACTCCGTATG
* * * * **
18740300 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTTCGAGCGCTCAGT
824 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
** ** *
18740365 CGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTG-CTGATC
1 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTC-GATC
* * *
18740429 CTGCTTCCA-CAACCCTTGGTTC-AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
65 CTGC-TGCATCAACCC-TCGATCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
** *
18740492 CAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCGGGCACTACATCGACCAGAGAGACGGGA
127 CAACCGACGAAACGA----GCGGGCGGGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * * *
18740557 TGCGTAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACATGCC
187 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
*
18740622 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATG
252 AATGCC-------T--C---TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * * *
18740687 GCAAGACGACTCGTCTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGAATTTTTTAAA
305 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
* * * * * *
18740752 ATTTTTTCGAAAGGATTTTTGGCCCTAAACTTGGTAGGCATGATCC-TGTTATTTTTCTTGGCAT
370 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG-TATTTTTGTTGGCAT
* * *
18740816 GCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTC
434 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
18740881 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
499 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
18740946 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
564 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * ** * * **
18741011 TCACACATCATGCGTTCACA-CCTCC-GACCCCCCGATCGAT-GGAACCCCAATGCCACCGGTCA
629 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG-TCGGAACCCCAATGCCGTCGGTCA
** * * * * * *
18741073 GGTTCTCCGGTGATGCTCCGACGATGGTACCCCGGC-AGAGAAAAATACAGCTCCAGCACATGCC
693 GGTTCT-CGACGATGCTCCGGCGATGGTGCCCCGACGA-AGAAAAATGCGGCACCAGCACATGCC
* * * *
18741137 CGAGCCCAGCATGTGCTGTCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGT
756 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
** * * *
18741202 ATGCTTAGACTATGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTC
821 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
*
18741267 AGC
886 AAC
* * * *
18741270 CGACCAGAGGGGCGGGATGCGCAAGCCGGGCGCAAGCCGAGGATCGGCCAGGTCCCCCTCTGCAT
1 CGGCCAGAGGGGCGGGATGCGCAA-----GC-C--G--G-GGATCGACCGGGTCCCCCTCTGCGT
* * * *
18741335 GCTGTCGATCCTACTGCCAT-AACCCTCGGTCCGATCCGATCTTAAACT-GGAATGAACTCCGTA
55 GCTGTCGATCCTGCTG-CATCAACCCTCGAT-CGATCTGATCTTAGACTGGGAATGAACTCCGTA
* *
18741398 TGCCTAAGCCAACCGACGAAA--A--GAGCGGGC--G-GGCGGGCACTACGTCGGCCAGAGAGAC
118 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGAC
* *
18741456 GGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
183 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACG
*
18741521 TGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
248 TGCCAATGCC-------T--C---TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * ** * *
18741586 CATTGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTT
301 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* * * * * *
18741651 TAAAATTTTTTTGAAAGGATTTTTGGCCCCAAACTTGGTATACGTGATCCTTATATTTTTTTTGG
366 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
18741716 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
431 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
18741781 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAA
496 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
** ** *
18741846 CTGGGTGTGAGTTCGAGAGGTTTGATGAGGGATA-GGGGCAAAATATAAGGGCCAAGTACCAGCA
561 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC-CAATATAAGGGCCAAGTACCAGCA
** ** *
18741910 CCCATCGCACATCATGTGCGCACACCCCTCCCGG-CCTTCCGATCACCGGAACCCCAATGCCGCC
625 CCCATCGCACATCATGTGCGCACA-CCC-CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC
* * * ** ** * *
18741974 GGTCAAGTTCTCCGGCAATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAACACA
688 GGTCAGGTTCT-CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* * * * * *
18742039 TGCCCGAGCCCAGCATGTGCTACCGTAACCCTTGGTCCGATTCGATCTTCGACTGGGAATGAACT
752 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * ** * *
18742104 CCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAATGTACAGGC
817 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* *
18742169 TCTCAGC
882 GCTCAAC
* * ** *
18742176 CGGCCAGAGGGGCGGGATGTGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCAATCC
1 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
** * * * * *
18742241 CACTGCCA-AAACCAT-TAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGACTAAGCC
66 TGCTG-CATCAACCCTCGA-T-CGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
18742304 AACCGACGAAACGAGCGGACGGGCGGGC--C-AGCACTACACCGGCCAGAGAGACGGGATGCGCA
128 AACCGACGAAACGAGCGGGCGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * *
18742366 AGTCATGGATCGATAGGGTGGAAGGTGGGTTTAGGCACATCTTTATATTTCTATGTGCCAATGCC
193 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
18742431 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
258 -------T--C---TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** * * *
18742496 CGACTCGTTTTCTATTTTTCACCATTTTCGAAACATTTTACGGTTCGAGATTTTTTAAAATTTTT
311 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * *
18742561 TTGGAAGGAATTTTGGCCCCAAACTTGGTAAACATGATCCTTGTATTTTTGTTGGCACGCACAAA
376 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
18742626 AAAATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACGATTTGAAAAAAGTGTCCCCATTT
441 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
18742691 CAGACA-TGTTAATGGCTACTGGCAACAAACCTATAAAATCCCAAATGCTCTTTAAGGGGGTGTG
506 CAGACACT-TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18742755 AGTTCTCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTGA-CAGCACCCATTGCA
570 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT-ACCAGCACCCATCGCA
* * * * * *
18742819 CATCATGTGCGCACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGCCAGTCCGATTCT
634 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * *
18742884 CTGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
699 C-GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * *
18742949 AACATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTTCGTATGCTTA
763 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
*
18743014 GACTGGAAATGAACTTCGTATGCTTAGACTAGAAATGAACTCTGTATGCCTAAGTCAACCCATGA
828 GACTGG----G-A------ATG---A-AC------T---C-C-GTATGCCTAAGTCAACCCACGA
*
18743079 AACGAGCGTGCGGGTGCTCAAC
867 AACGAGCGTGCGGGCGCTCAAC
* * * * * * * * *
18743101 CGGCCAGAGGGGCGGGATGCGTAAGTCGCGGATCAATCGGGTCCCCTTCTACGTGCT-ACTAATC
1 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTC-GATC
* * *
18743165 TTGCT--ATCGCAACCCTTGATCCGGTC-GAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
65 CTGCTGCAT--CAACCCTCGAT-CGATCTG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
18743227 GCAACCAACGAAATGAGC-GGCGGGTGGGCGG-GTGAGCACTACGTCGACCAGAGAGACGGGATG
126 CCAACCGACGAAACGAGCGGGCGGGCGGGCGGCG-G-GCACTACGCCGGCCAGAGAGACGGGATG
* * *
18743290 TGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTACATGCCAA
189 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
* *
18743355 TGCCATTTTTATGTCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGC
254 TGCC---------TC---TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
** *
18743420 AAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAAC-TTTTACGGTTCGTGATTTTTTAAAAT
307 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * * *
18743484 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTTATGCTTGTATTTTTTTTGGCATGCA
372 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
18743549 CAAAAAAATTCAGCTAAAAACTAGAAGTGTTCAAGATTTTATGACCATTTGAAAAAAGTGTCCCC
437 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
18743614 ATTTCAGACTCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
502 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
18743679 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAATACCAGCTCCCATCG
567 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* ** *
18743744 CACATCATGTGTGCACACCCCCC-G----ATC-A-C-T-GGAACCCCAATGCTGTCGGTCAGGTT
632 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* * * * *
18743800 CTCCGACGATGCTCCAGTGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCAAGC
697 CT-CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* ** * *
18743865 CTAGCATGTGCTGCCGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCATATGCT
761 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
18743930 TAGACTGGGAATGAACTCCGTATGC
826 TAGACTGGGAATGAACTCCGTATGC
18743955 TTAGACTGGG
Statistics
Matches: 6299, Mismatches: 724, Indels: 457
0.84 0.10 0.06
Matches are distributed among these distances:
892 10 0.00
893 1 0.00
894 2 0.00
895 307 0.05
896 45 0.01
897 653 0.10
898 14 0.00
899 161 0.03
900 465 0.07
901 29 0.00
902 11 0.00
903 637 0.10
904 387 0.06
905 231 0.04
906 495 0.08
907 203 0.03
908 180 0.03
909 3 0.00
910 6 0.00
911 2 0.00
912 1 0.00
913 7 0.00
914 3 0.00
915 41 0.01
916 55 0.01
917 2 0.00
918 142 0.02
919 2 0.00
920 7 0.00
921 169 0.03
922 3 0.00
923 1 0.00
924 16 0.00
925 152 0.02
926 212 0.03
927 521 0.08
928 183 0.03
929 207 0.03
930 12 0.00
931 5 0.00
932 391 0.06
933 171 0.03
934 150 0.02
937 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
TGCTGCATCAACCCTCGATCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCTCT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCGACGATGCTCCGGCGA
TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
Found at i:18751975 original size:26 final size:26
Alignment explanation
Indices: 18751939--18751989 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18751929 CTGGTCTGAT
18751939 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18751965 CTTAGACTGGGAATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
18751990 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18752875 original size:26 final size:26
Alignment explanation
Indices: 18752837--18752889 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18752827 CCGATCCGAT
* * *
18752837 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18752863 CTTAGACTAGGAATGATCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18752889 C
1 C
18752890 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18755525 original size:26 final size:26
Alignment explanation
Indices: 18755496--18755548 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18755486 TCGGTCCGAT
18755496 CTTAGAAT-GAGAATGAACTCCGTATG
1 CTTAGAATAG-GAATGAACTCCGTATG
*
18755522 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
18755548 C
1 C
18755549 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGAATAGGAATGAACTCCGTATG
Found at i:18756608 original size:26 final size:26
Alignment explanation
Indices: 18756572--18756623 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18756562 CTGGTCTGAT
18756572 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18756598 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18756624 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18757307 original size:26 final size:26
Alignment explanation
Indices: 18757270--18757320 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18757260 GATCCAATCA
*
18757270 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGAGAATGAACTTCGTATGCT
18757296 TAGACTGAGAATGAACTTCGTATGC
1 TAGACTGAGAATGAACTTCGTATGC
18757321 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TAGACTGAGAATGAACTTCGTATGCT
Found at i:18758177 original size:26 final size:26
Alignment explanation
Indices: 18758148--18758198 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18758138 GATCCGATCA
18758148 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
18758174 TAGACTGGGAATGAACTTCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
18758199 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:18759949 original size:26 final size:26
Alignment explanation
Indices: 18759900--18759952 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18759890 CCGGTCCGAT
*
18759900 CTTAGACTGGGAATTAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
**
18759926 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
18759952 C
1 C
18759953 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:18760419 original size:881 final size:878
Alignment explanation
Indices: 18759036--18761569 Score: 3538
Period size: 881 Copynumber: 2.8 Consensus size: 878
18759026 CTGGTCCGAT
* * * *
18759036 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAACGAGCGTGCAGGCACTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * *
18759101 CAGCCAGAGGGGCGCGATGCACAAGCTGAGGATCGGCCGGGTCCCCCTCTATGTGCTACCGATCC
66 TGGCCAGAGGGG-G-GATGCGCAAGCTGAGGATC-GCTGGGTCCCCCTCTGTGTGCTGCCGATCC
* *
18759166 TGCTATCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAA
128 TGCT-TCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
18759231 CCGACGAAACAAGTGGGCGGGCGTGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
192 CCGACGAAAC----GGGC--G-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC-
*
18759296 TTGGTCGATAGGGTGGTTGGTAGGTTTAGTCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
248 TTGGTCGATAGGGTGGTTGGTAGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
18759361 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
313 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
18759426 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGAA
378 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA-GGTTTGGGATTTTTTAAAATTTTTTCGAA
18759491 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTAATTTTTTTTGGCATGCAAAAAAAAAT
442 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTAATTTTTTTTGGCATGCAAAAAAAAAT
* *
18759556 TTAGCTAAAAACTCGAAGTGTACAAGATGTTATGACCATTTGAAAAAAAATGTCCCCATTTCAGA
507 TCAGCTAAAAACTCGAAGTGTACAAGATGTTGTGACCATTTG-AAAAAAATGTCCCCATTTCAGA
18759621 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTC
571 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTC
18759686 TCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCAT
636 TCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCAT
*
18759751 GTGCGCACACCGCCCCGGCCCCCCCGATCATCGGAACCCAAATGCCGTC-GATCAGGTTCT-C-C
701 GTGCGCACACC-CCCCGGCCCCCCCGATCATCGGAACCCAAATGCCGCCTG-TCAGGTTCTCCGC
* * * * **
18759813 -A-GTGATGGTGGCCCGACGAAGAAAAATGCAACACCAGCATATGCCTGACCCCAGCATGTGCTA
764 GACGTGATAGTGCCCCGACGAAAAAAAATGCAACACCAGCACATGCCCAACCCCAGCATGTGCTA
* * *
18759876 CCGCAACCCTCGATC-CGGTCCGATCTTAGACTGGGAATTAACACCGTATG
829 CCGCAACCCTCGATCAAGGTCC-ATCTTAGACTGAGAATGAACACCGTATG
*
18759926 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18759991 TGGCCAGTAGGGGGGATGCGTAAGCCGAGGATCAGCTGGGTCCCCCTCTGTATGCTGTCGATCCT
66 TGGCCAG-AGGGGGGATGCGCAAGCTGAGGATC-GCTGGGTCCCCCTCTGTGTGCTGCCGATCCT
* * * * *
18760056 GTTGTCACAACTCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAAC
129 GCT-TCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
18760121 CAACGAAACGAGCGGACGGGTACTACGCGGGCCAGAGAGACGGGATGCGCAAGCCATTGGTCGAT
193 CGACGAAACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC-TTGGTCGAT
*
18760186 AGGGTGGTTGGTAGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
257 AGGGTGGTTGGTAGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
18760251 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
322 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* *
18760316 TTTTTCACGATTTTTGAAAACTTTTGT-GGTTCGGGATTTTTTTAAAATTTTTTC-AGAAGGAGT
387 TTTTTCATGATTTTTG-AAACTTTT-TAGGTTTGGGA-TTTTTTAAAATTTTTTCGA-AAGGAGT
* * *
18760379 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTTTTGGTATGCACAAAAAAATTCAGCT
448 TTTGGCCCCAAACTTGGTAGACGTGATCCTTTAATTTTTTTTGGCATGCAAAAAAAAATTCAGCT
* * * *
18760444 AAAAACTCAAAGTGTACAAGA-GTTTGTGACCATTTGAAAAAAGTGTCCCAATTTTAGACACTTT
513 AAAAACTCGAAGTGTACAAGATG-TTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTT
* * * *
18760508 AATGGCTACTGACAGCAAAGCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGTGAGTTCTCGAGG
577 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * *
18760573 TTTGATAAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
642 TTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGC
* *
18760638 ACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCTGTCAGGTTCTCCGGCGATGCTC
707 ACACCCCCCGGCCCCCCCGATCATCGGAACCCAAATGCCGCCTGTCAGGTTCTCC-GCGA-----
*** * * *
18760703 CGGTGATAGTGCCCCGACGAAAAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTTCTGC
766 C-GTGATAGTGCCCCGACGAAAAAAAATGCAACACCAGCACATGCCCAACCCCAGCATGTGCTAC
* * * *
18760768 CGCAACCCTCGGTCAAGTTTCATCTTAGACTGAGAATGAACTCCGTATG
830 CGCAACCCTCGATCAAGGTCCATCTTAGACTGAGAATGAACACCGTATG
** *
18760817 CTTAGACTGGGAATGAAC-TCTGTATGCCTAAGTCAACTTACGAAACGAGTGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
18760881 -TCGGGCAGAGGGGCGGGATGCGCAAGTTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGAT
65 CT-GGCCAGA-GGG-GGGATGCGCAAGCTGAGGATCGCT-GGGTCCCCCTCTGTGTGCTGCCGAT
* * * * * * *
18760945 CCTACTACTATAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCATATGCCTAAACC
126 CCTGCTTC-ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * **
18761010 AACCGACGGAACGAGCGGGCGGGCGGGCGGGCACTATGCCGGCTAGAGAGACGGGATGCACAATT
190 AACCGAC-GAA--A-----CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * * ** *
18761075 CGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCACT
247 CTTGG-TCGATAGGGTGGTTGGTAGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
18761140 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
311 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
18761205 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAAGGTTTGGGATTTTTTAAAATTTTTTCG
376 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-AGGTTTGGGATTTTTTAAAATTTTTTCG
18761270 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTAATTTTTTTTGGCATGCAAAAAAAA
440 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTAATTTTTTTTGGCATGCAAAAAAAA
*
18761335 ATTCAACTAAAAACTCGAAGTGTACAAGATGTTGTGACCATTTGAAAAAAATGTCCCCATTTCAG
505 ATTCAGCTAAAAACTCGAAGTGTACAAGATGTTGTGACCATTTGAAAAAAATGTCCCCATTTCAG
18761400 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTT
570 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTT
* ** * * *
18761465 CTCGAGGTTTGATGAGGGATAGGGGGCC-----AAGCACC-AGCACCCATCGCACATCGCACATC
635 CTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGCA-CCAGCACCCATCGCACATC
*
18761524 ATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCAAATGC
699 ATGTGCGCACA-CCCCCCGGCCCCCCCGATCATCGGAACCCAAATGC
18761570 TGTCCATCCT
Statistics
Matches: 1464, Mismatches: 140, Indels: 76
0.87 0.08 0.05
Matches are distributed among these distances:
880 43 0.03
881 354 0.24
882 126 0.09
883 3 0.00
884 1 0.00
885 3 0.00
889 107 0.07
890 70 0.05
891 162 0.11
892 99 0.07
893 6 0.00
894 55 0.04
895 9 0.01
898 1 0.00
899 234 0.16
900 191 0.13
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (878 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
TGGCCAGAGGGGGGATGCGCAAGCTGAGGATCGCTGGGTCCCCCTCTGTGTGCTGCCGATCCTGC
TTCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCTTGGTCGATAGGG
TGGTTGGTAGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
TCATGATTTTTGAAACTTTTTAGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCC
CAAACTTGGTAGACGTGATCCTTTAATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTC
GAAGTGTACAAGATGTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTAC
TGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
GGATAGGGGACCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
GGCCCCCCCGATCATCGGAACCCAAATGCCGCCTGTCAGGTTCTCCGCGACGTGATAGTGCCCCG
ACGAAAAAAAATGCAACACCAGCACATGCCCAACCCCAGCATGTGCTACCGCAACCCTCGATCAA
GGTCCATCTTAGACTGAGAATGAACACCGTATG
Found at i:18760830 original size:26 final size:26
Alignment explanation
Indices: 18760791--18760843 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18760781 CAAGTTTCAT
18760791 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
18760817 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
18760843 C
1 C
18760844 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:18762351 original size:26 final size:26
Alignment explanation
Indices: 18762315--18762367 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18762305 CTGGTCTGAT
*
18762315 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18762341 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18762367 C
1 C
18762368 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18763274 original size:26 final size:26
Alignment explanation
Indices: 18763223--18763275 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18763213 CTGGTCCGAT
* *
18763223 CTTAGAGTGGGAATGAACTTCGTATG
1 CTTAGAGTGGGAATGAACTCCATATG
*
18763249 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGAGTGGGAATGAACTCCATATG
18763275 C
1 C
18763276 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGAGTGGGAATGAACTCCATATG
Found at i:18763617 original size:159 final size:159
Alignment explanation
Indices: 18763249--18763597 Score: 536
Period size: 159 Copynumber: 2.2 Consensus size: 159
18763239 ACTTCGTATG
* *
18763249 CTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18763314 CGGCCAGAGGGGCGAGATGTGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
18763379 TACTGTCGTAACCCTTGGTCTGGTCCGAT
131 TACTGCCGTAACCATCGGTCCGGTCCGAT
* * * *
18763408 CTTAGACTGTGAATCAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCGGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
18763473 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCTCCCTCTACGTGCTGCCGATCT
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
*
18763538 TGCTGCCGTAACCATCGGTCCGGTCCGAT
131 TACTGCCGTAACCATCGGTCCGGTCCGAT
18763567 CTTAGACTGGGAATGAACTCCGTATGCCTAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAA
18763598 TCCGACCGAT
Statistics
Matches: 170, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
159 170 1.00
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
TACTGCCGTAACCATCGGTCCGGTCCGAT
Found at i:18764219 original size:20 final size:20
Alignment explanation
Indices: 18764178--18764222 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
18764168 TGAATTTTAC
* *
18764178 GTGAAAAAACCCAGATTTCG
1 GTGAAAAAACCCAGAATCCG
*
18764198 GTGAGAAAACCCAGAATCCG
1 GTGAAAAAACCCAGAATCCG
18764218 GTGAA
1 GTGAA
18764223 TCTTCAACCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (20 bp):
GTGAAAAAACCCAGAATCCG
Found at i:18764599 original size:11 final size:10
Alignment explanation
Indices: 18764583--18764648 Score: 55
Period size: 11 Copynumber: 6.5 Consensus size: 10
18764573 TTAATATTCT
18764583 TTTTATCTTTA
1 TTTT-TCTTTA
*
18764594 TTTTATTTTTA
1 TTTT-TCTTTA
*
18764605 TTTTTGTTTTA
1 TTTTT-CTTTA
*
18764616 CTTTTCTTTA
1 TTTTTCTTTA
18764626 -TTTT-TTTA
1 TTTTTCTTTA
*
18764634 TTTTTATTTA
1 TTTTTCTTTA
18764644 TTTTT
1 TTTTT
18764649 TTATTATTCT
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
8 4 0.08
9 8 0.16
10 14 0.29
11 23 0.47
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.80
Consensus pattern (10 bp):
TTTTTCTTTA
Found at i:18764604 original size:17 final size:16
Alignment explanation
Indices: 18764582--18764653 Score: 63
Period size: 18 Copynumber: 4.1 Consensus size: 16
18764572 TTTAATATTC
*
18764582 TTTTTATCTTTATTTTA
1 TTTTTATATTT-TTTTA
*
18764599 TTTTTATTTTTGTTTTA
1 TTTTTATATTT-TTTTA
*
18764616 CTTTTCTTTATTTTTTTA
1 -TTTT-TATATTTTTTTA
18764634 TTTTTATTTATTTTTTTA
1 TTTTTA--TATTTTTTTA
18764652 TT
1 TT
18764654 ATTCTGTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
16 1 0.02
17 19 0.41
18 21 0.46
19 5 0.11
ACGTcount: A:0.14, C:0.04, G:0.01, T:0.81
Consensus pattern (16 bp):
TTTTTATATTTTTTTA
Found at i:18764631 original size:29 final size:26
Alignment explanation
Indices: 18764599--18764653 Score: 74
Period size: 29 Copynumber: 2.0 Consensus size: 26
18764589 CTTTATTTTA
*
18764599 TTTTTATTTTTGTTTTACTTTTCTTTATT
1 TTTTTATTTTT-ATTTA-TTTT-TTTATT
18764628 TTTTTATTTTTATTTATTTTTTTATT
1 TTTTTATTTTTATTTATTTTTTTATT
18764654 ATTCTGTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 6 0.24
27 4 0.16
28 4 0.16
29 11 0.44
ACGTcount: A:0.13, C:0.04, G:0.02, T:0.82
Consensus pattern (26 bp):
TTTTTATTTTTATTTATTTTTTTATT
Found at i:18764643 original size:18 final size:18
Alignment explanation
Indices: 18764594--18764653 Score: 86
Period size: 18 Copynumber: 3.4 Consensus size: 18
18764584 TTTATCTTTA
*
18764594 TTTTATTTTTATTT-TTG
1 TTTTATTTTTATTTATTT
* *
18764611 TTTTACTTTTCTTTATTT
1 TTTTATTTTTATTTATTT
18764629 TTTTATTTTTATTTATTT
1 TTTTATTTTTATTTATTT
18764647 TTTTATT
1 TTTTATT
18764654 ATTCTGTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
17 12 0.32
18 25 0.68
ACGTcount: A:0.13, C:0.03, G:0.02, T:0.82
Consensus pattern (18 bp):
TTTTATTTTTATTTATTT
Found at i:18764649 original size:11 final size:10
Alignment explanation
Indices: 18764590--18764656 Score: 66
Period size: 11 Copynumber: 6.6 Consensus size: 10
18764580 TCTTTTTATC
18764590 TTTATTTTATT
1 TTTATTTT-TT
18764601 TTTATTTTTGT
1 TTTATTTTT-T
* *
18764612 TTTACTTTTC
1 TTTATTTTTT
18764622 TTTA--TTTT
1 TTTATTTTTT
*
18764630 TTTATTTTTA
1 TTTATTTTTT
18764640 TTTATTTTTT
1 TTTATTTTTT
18764650 TATTATT
1 T-TTATT
18764657 CTGTTTTCTT
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
8 7 0.15
10 18 0.38
11 22 0.47
ACGTcount: A:0.15, C:0.03, G:0.01, T:0.81
Consensus pattern (10 bp):
TTTATTTTTT
Found at i:18764759 original size:58 final size:60
Alignment explanation
Indices: 18764671--18764970 Score: 374
Period size: 58 Copynumber: 5.0 Consensus size: 60
18764661 TTTCTTTAAA
*
18764671 TAAAAATCAAAATTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT-AAAGTTT-CAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* **
18764733 TAAAAAT-AAGTTT-AAAAAAAAGTATTTTTAACGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAAGTTTCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* * * *
18764791 TGAAAATCAAAGTTTCCAAAAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCT
1 TAAAAAT-AAAGTTT-C-AAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* * * *
18764854 TAGAAATAAA-TTTC-CAGAAAAATATTTTTAGGGAAAAGTTGCAAGTATCAATTTTCCT
1 TAAAAATAAAGTTTCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* * *
18764912 TGAAAATCAAAGTTTCCAAAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 TAAAAAT-AAAGTTT-CAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTT
18764971 TCCTACACAA
Statistics
Matches: 203, Mismatches: 26, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
58 91 0.45
59 3 0.01
60 15 0.07
61 4 0.02
62 46 0.23
63 44 0.22
ACGTcount: A:0.46, C:0.09, G:0.13, T:0.33
Consensus pattern (60 bp):
TAAAAATAAAGTTTCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:18764830 original size:121 final size:120
Alignment explanation
Indices: 18764673--18764970 Score: 472
Period size: 121 Copynumber: 2.5 Consensus size: 120
18764663 TCTTTAAATA
* * *
18764673 AAAATCAAAATTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
1 AAAATCAAAGTTTCCAAAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
*
18764738 ATAAGTTT-AAAAAAAAGTATTTTTAACGAAAAGTTGAAAGTATCAATTTTCCTTG
66 ATAAATTTCAAAAAAAA-TATTTTTAACGAAAAGTTGAAAGTATCAATTTTCCTTG
* *
18764793 AAAATCAAAGTTTCCAAAAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAGA
1 AAAATCAAAGTTTCC-AAAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
* * ** *
18764858 AATAAATTTCCAGAAAAATATTTTTAGGGAAAAGTTGCAAGTATCAATTTTCCTTG
65 AATAAATTTCAAAAAAAATATTTTTAACGAAAAGTTGAAAGTATCAATTTTCCTTG
18764914 AAAATCAAAGTTTCCAAAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 AAAATCAAAGTTTCCAAAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
18764971 TCCTACACAA
Statistics
Matches: 165, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
120 56 0.34
121 103 0.62
122 6 0.04
ACGTcount: A:0.46, C:0.09, G:0.13, T:0.33
Consensus pattern (120 bp):
AAAATCAAAGTTTCCAAAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
ATAAATTTCAAAAAAAATATTTTTAACGAAAAGTTGAAAGTATCAATTTTCCTTG
Found at i:18775347 original size:36 final size:36
Alignment explanation
Indices: 18775307--18775376 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
18775297 AAAAATTTAA
* * *
18775307 AAAAAAAGAGAAAAAATG-ATAAAATGAAAAATGATG
1 AAAAAAA-ACAAAAAATGAAAAAAATAAAAAATGATG
*
18775343 AAAAAAAACAAAACATGAAAAAAATAAAAAATGA
1 AAAAAAAACAAAAAATGAAAAAAATAAAAAATGA
18775377 AAAAGTGATT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 8 0.28
36 21 0.72
ACGTcount: A:0.74, C:0.03, G:0.11, T:0.11
Consensus pattern (36 bp):
AAAAAAAACAAAAAATGAAAAAAATAAAAAATGATG
Found at i:18775360 original size:17 final size:16
Alignment explanation
Indices: 18775317--18775380 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 16
18775307 AAAAAAAGAG
*
18775317 AAAAAATG-ATAAAAT
1 AAAAAATGAAAAAAAT
18775332 GAAAAATGATGAAAAAAA-
1 -AAAAA--ATGAAAAAAAT
18775350 ACAAAACATGAAAAAAAT
1 A-AAAA-ATGAAAAAAAT
18775368 AAAAAATGAAAAA
1 AAAAAATGAAAAA
18775381 GTGATTGAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
16 13 0.32
17 15 0.37
18 8 0.20
19 5 0.12
ACGTcount: A:0.75, C:0.03, G:0.09, T:0.12
Consensus pattern (16 bp):
AAAAAATGAAAAAAAT
Found at i:18775371 original size:7 final size:8
Alignment explanation
Indices: 18775316--18775380 Score: 53
Period size: 8 Copynumber: 7.8 Consensus size: 8
18775306 AAAAAAAAGA
18775316 GAAAAAAT
1 GAAAAAAT
*
18775324 GATAAAAT
1 GAAAAAAT
18775332 GAAAAATGAT
1 GAAAAA--AT
18775342 GAAAAAA-
1 GAAAAAAT
*
18775349 AACAAAACAT
1 GA-AAAA-AT
18775359 GAAAAAAAT
1 G-AAAAAAT
18775368 -AAAAAAT
1 GAAAAAAT
18775375 GAAAAA
1 GAAAAA
18775381 GTGATTGAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
7 8 0.17
8 22 0.48
9 3 0.07
10 12 0.26
11 1 0.02
ACGTcount: A:0.74, C:0.03, G:0.11, T:0.12
Consensus pattern (8 bp):
GAAAAAAT
Found at i:18776440 original size:41 final size:40
Alignment explanation
Indices: 18776395--18776681 Score: 367
Period size: 41 Copynumber: 7.2 Consensus size: 40
18776385 ATGATTGTCA
18776395 AGGAGCAATTTACTTTCCAAAGTTTCGT-TGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAG--TCGTGTGCCTCTGTTTAG
*
18776436 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGT-GTGCCTCTGTTTAG
* *
18776477 AGGAGTAATTTACTTTCCCAAAGTCGTGGTGCCTTTGTTTAG
1 AGGAGCAATTTACTTT-CCAAAGTCGT-GTGCCTCTGTTTAG
*
18776519 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGT-GTGCCTCTGTTTAG
*
18776560 AGGAGCAA---A--GT---AAGTCGTGTTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTG-TGCCTCTGTTTAG
*
18776593 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGT-GTGCCTCTGTTTAG
18776634 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTAC-TTTCCAAAGTCGT-GTGCCTCTGTTTAG
18776676 AGGAGC
1 AGGAGC
18776682 TTTGGTCAAA
Statistics
Matches: 222, Mismatches: 10, Indels: 27
0.86 0.04 0.10
Matches are distributed among these distances:
32 1 0.00
33 28 0.13
36 2 0.01
38 2 0.01
39 4 0.02
41 112 0.50
42 73 0.33
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (40 bp):
AGGAGCAATTTACTTTCCAAAGTCGTGTGCCTCTGTTTAG
Found at i:18776533 original size:83 final size:82
Alignment explanation
Indices: 18776395--18776681 Score: 432
Period size: 83 Copynumber: 3.6 Consensus size: 82
18776385 ATGATTGTCA
18776395 AGGAGCAATTTACTTTCCAAAGTTTCGT--TGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAG
1 AGGAGCAATTTACTTTCCAAAG--TCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAG
18776458 TCGTGGTGCCTCTGTTTAG
64 TCGTGGTGCCTCTGTTTAG
* *
18776477 AGGAGTAATTTACTTTCCCAAAGTCGTGGTGCCTTTGTTTAGAGGAGCAATTTATTTTCCAAAGT
1 AGGAGCAATTTACTTT-CCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
18776542 CGTGGTGCCTCTGTTTAG
65 CGTGGTGCCTCTGTTTAG
* *
18776560 AGGAGCAA---A--GT---AAGTCGTGTTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTC
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTC
18776617 GTGGTGCCTCTGTTTAG
66 GTGGTGCCTCTGTTTAG
18776634 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
1 AGGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
18776682 TTTGGTCAAA
Statistics
Matches: 185, Mismatches: 8, Indels: 23
0.86 0.04 0.11
Matches are distributed among these distances:
74 69 0.37
77 1 0.01
78 1 0.01
80 2 0.01
81 4 0.02
82 15 0.08
83 93 0.50
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (82 bp):
AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTC
GTGGTGCCTCTGTTTAG
Found at i:18776618 original size:74 final size:74
Alignment explanation
Indices: 18776497--18776641 Score: 272
Period size: 74 Copynumber: 2.0 Consensus size: 74
18776487 TACTTTCCCA
*
18776497 AAGTCGTGGTGCCTTTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
1 AAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
18776562 GAGCAAAGT
66 GAGCAAAGT
*
18776571 AAGTCGTGTTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
1 AAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
18776636 GAGCAA
66 GAGCAA
18776642 TTTACTTTTC
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.34
Consensus pattern (74 bp):
AAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
GAGCAAAGT
Found at i:18776659 original size:116 final size:116
Alignment explanation
Indices: 18776455--18776681 Score: 402
Period size: 116 Copynumber: 2.0 Consensus size: 116
18776445 TTATTTTCCA
* *
18776455 AAGTCGTGGTGCCTCTGTTTAGAGGAGTAATTTACTTTCCCAAAGTCGTGGTGCCTTTGTTTAGA
1 AAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCCAAAGTCGTGGTGCCTCTGTTTAGA
18776520 GGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAAAGT
66 GGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAAAGT
* *
18776571 AAGTCGTGTTGCCTCTGTTTAGAGGAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAGA
1 AAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCCAAAGTCGTGGTGCCTCTGTTTAGA
18776635 GGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
66 GGAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
18776682 TTTGGTCAAA
Statistics
Matches: 106, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
115 39 0.37
116 67 0.63
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (116 bp):
AAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCCAAAGTCGTGGTGCCTCTGTTTAGA
GGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAAAGT
Found at i:18776681 original size:42 final size:41
Alignment explanation
Indices: 18776571--18776681 Score: 204
Period size: 42 Copynumber: 2.7 Consensus size: 41
18776561 GGAGCAAAGT
*
18776571 AAGTCGTGTTGCCTCTGTTTAGAGGAGCAATTTATTTTCCA
1 AAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCA
18776612 AAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCA
1 AAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-TTTTCCA
18776654 AAGTCGTGGTGCCTCTGTTTAGAGGAGC
1 AAGTCGTGGTGCCTCTGTTTAGAGGAGC
18776682 TTTGGTCAAA
Statistics
Matches: 68, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
41 33 0.49
42 35 0.51
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (41 bp):
AAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCA
Found at i:18776711 original size:17 final size:17
Alignment explanation
Indices: 18776689--18776754 Score: 73
Period size: 17 Copynumber: 3.9 Consensus size: 17
18776679 AGCTTTGGTC
18776689 AAAAACAAAAAAAAACA
1 AAAAACAAAAAAAAACA
18776706 AAAAACAAAAAAAAA-A
1 AAAAACAAAAAAAAACA
* *
18776722 CAACAA-AAATAAAAACA
1 -AAAAACAAAAAAAAACA
*
18776739 CAAAACAAAACAAAAA
1 AAAAACAAAA-AAAAA
18776755 ATGACAATGT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
16 12 0.30
17 23 0.57
18 5 0.12
ACGTcount: A:0.85, C:0.14, G:0.00, T:0.02
Consensus pattern (17 bp):
AAAAACAAAAAAAAACA
Found at i:18776717 original size:14 final size:13
Alignment explanation
Indices: 18776689--18776755 Score: 64
Period size: 14 Copynumber: 4.9 Consensus size: 13
18776679 AGCTTTGGTC
18776689 AAAAACAAAAAAA
1 AAAAACAAAAAAA
*
18776702 AACAAAAAACAAAAA
1 AA-AAACAA-AAAAA
18776717 AAAAACAACAAAAA
1 AAAAACAA-AAAAA
*
18776731 TAAAAAC-ACAAAA
1 -AAAAACAAAAAAA
*
18776744 CAAAACAAAAAA
1 AAAAACAAAAAA
18776756 TGACAATGTT
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
12 5 0.11
13 10 0.22
14 17 0.38
15 13 0.29
ACGTcount: A:0.85, C:0.13, G:0.00, T:0.01
Consensus pattern (13 bp):
AAAAACAAAAAAA
Found at i:18776729 original size:28 final size:27
Alignment explanation
Indices: 18776689--18776755 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 27
18776679 AGCTTTGGTC
18776689 AAAAACAAAAAAAAACAAAAA-ACAAAAA
1 AAAAACAAAAAAAAA-AAAAACAC-AAAA
* *
18776717 AAAAACAACAAAAATAAAAACACAAAA
1 AAAAACAAAAAAAAAAAAAACACAAAA
*
18776744 CAAAACAAAAAA
1 AAAAACAAAAAA
18776756 TGACAATGTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 19 0.56
28 15 0.44
ACGTcount: A:0.85, C:0.13, G:0.00, T:0.01
Consensus pattern (27 bp):
AAAAACAAAAAAAAAAAAAACACAAAA
Found at i:18776755 original size:7 final size:7
Alignment explanation
Indices: 18776698--18776748 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 7
18776688 CAAAAACAAA
18776698 AAAAAAC
1 AAAAAAC
18776705 AAAAAAC
1 AAAAAAC
18776712 AAAAAA-
1 AAAAAAC
18776718 AAAACAAC
1 AAAA-AAC
18776726 -AAAAA-
1 AAAAAAC
*
18776731 TAAAAAC
1 AAAAAAC
*
18776738 ACAAAAC
1 AAAAAAC
18776745 AAAA
1 AAAA
18776749 CAAAAAATGA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
6 11 0.30
7 26 0.70
ACGTcount: A:0.84, C:0.14, G:0.00, T:0.02
Consensus pattern (7 bp):
AAAAAAC
Found at i:18776959 original size:17 final size:16
Alignment explanation
Indices: 18776918--18776959 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
18776908 ATTTTTTACC
18776918 TTGTATTTTTTTTCTT
1 TTGTATTTTTTTTCTT
* *
18776934 TTTTCTTTTTCTTTCTT
1 TTGTATTTTT-TTTCTT
18776951 TTGTATTTT
1 TTGTATTTT
18776960 AGGTATTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 8 0.38
17 13 0.62
ACGTcount: A:0.05, C:0.10, G:0.05, T:0.81
Consensus pattern (16 bp):
TTGTATTTTTTTTCTT
Found at i:18776993 original size:28 final size:27
Alignment explanation
Indices: 18776954--18777015 Score: 63
Period size: 28 Copynumber: 2.2 Consensus size: 27
18776944 CTTTCTTTTG
*
18776954 TATTTTAGGTAT-TTTATTATTTATTAT
1 TATTTTAGGTATATCT-TTATTTATTAT
*
18776981 TATTATTATGTATATCTTTATTTATTTAT
1 TATT-TTAGGTATATCTTTATTTA-TTAT
*
18777010 TTTTTT
1 TATTTT
18777016 CTCTGTTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
27 4 0.14
28 16 0.55
29 9 0.31
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.69
Consensus pattern (27 bp):
TATTTTAGGTATATCTTTATTTATTAT
Found at i:18777070 original size:14 final size:16
Alignment explanation
Indices: 18777020--18777070 Score: 56
Period size: 15 Copynumber: 3.4 Consensus size: 16
18777010 TTTTTTCTCT
18777020 GTTA-ATATTTATAT-
1 GTTATATATTTATATA
* *
18777034 GTAATTTATTTATATA
1 GTTATATATTTATATA
18777050 GTTATATATTTAT-TA
1 GTTATATATTTATATA
18777065 -TTATAT
1 GTTATAT
18777071 TATAATTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
14 9 0.29
15 11 0.35
16 11 0.35
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (16 bp):
GTTATATATTTATATA
Found at i:18777084 original size:19 final size:20
Alignment explanation
Indices: 18777035--18777085 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 20
18777025 TATTTATATG
*
18777035 TAATTTATTTA-TATAGTTA
1 TAATTTTTTTATTATAGTTA
*
18777054 T-ATATTTATTATTATA-TTA
1 TAAT-TTTTTTATTATAGTTA
18777073 TAATTTTTTTATT
1 TAATTTTTTTATT
18777086 CTGGTAATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
18 2 0.08
19 18 0.69
20 6 0.23
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (20 bp):
TAATTTTTTTATTATAGTTA
Found at i:18777640 original size:20 final size:20
Alignment explanation
Indices: 18777603--18777641 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
18777593 TTCCGACGAG
*
18777603 AAAACCCAGATTTCGATGAC
1 AAAACCCAGATCTCGATGAC
18777623 AAAACCCAGAATCT-GATGA
1 AAAACCCAG-ATCTCGATGA
18777642 ATCTTCAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.44, C:0.23, G:0.15, T:0.18
Consensus pattern (20 bp):
AAAACCCAGATCTCGATGAC
Found at i:18778062 original size:6 final size:6
Alignment explanation
Indices: 18778041--18778103 Score: 51
Period size: 6 Copynumber: 10.8 Consensus size: 6
18778031 TTTAATATTC
* * * *
18778041 TTTTTA TCTTTA -TTTTA TTTTTA TTTTT- GTTTTA CTTTTC TTTTT-
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
*
18778086 TTTATTT TTTTTA TTTTT
1 TTT-TTA TTTTTA TTTTT
18778104 TTATTATTCT
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
5 11 0.24
6 32 0.70
7 3 0.07
ACGTcount: A:0.11, C:0.05, G:0.02, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:18778063 original size:17 final size:17
Alignment explanation
Indices: 18778041--18778094 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 17
18778031 TTTAATATTC
18778041 TTTTTATCTTTATTTTA
1 TTTTTATCTTTATTTTA
* *
18778058 TTTTTATTTTTGTTTTA
1 TTTTTATCTTTATTTTA
* *
18778075 -CTTT-TCTTTTTTTTA
1 TTTTTATCTTTATTTTA
18778090 TTTTT
1 TTTTT
18778095 TTTATTTTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
15 9 0.30
16 6 0.20
17 15 0.50
ACGTcount: A:0.11, C:0.06, G:0.02, T:0.81
Consensus pattern (17 bp):
TTTTTATCTTTATTTTA
Found at i:18778073 original size:11 final size:10
Alignment explanation
Indices: 18778049--18778111 Score: 54
Period size: 11 Copynumber: 5.6 Consensus size: 10
18778039 TCTTTTTATC
18778049 TTTATTTTATT
1 TTTATTTT-TT
18778060 TTTATTTTTGT
1 TTTATTTTT-T
18778071 TTTACTTTTCTTT
1 TTTA--TTT-TTT
*
18778084 TTTTTATTTTT
1 TTTAT-TTTTT
18778095 TTTATTTTTT
1 TTTATTTTTT
18778105 TATTATT
1 T-TTATT
18778112 CTGTTTTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
10 7 0.16
11 26 0.59
12 2 0.05
13 7 0.16
14 2 0.05
ACGTcount: A:0.13, C:0.03, G:0.02, T:0.83
Consensus pattern (10 bp):
TTTATTTTTT
Found at i:18778096 original size:17 final size:16
Alignment explanation
Indices: 18778053--18778108 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 16
18778043 TTTATCTTTA
*
18778053 TTTTATTTTTATTTTTG
1 TTTTATTTTT-TTTTTT
* *
18778070 TTTTA-CTTTTCTTTT
1 TTTTATTTTTTTTTTT
18778085 TTTTATTTTTTTTATTT
1 TTTTATTTTTTTT-TTT
18778102 TTTTATT
1 TTTTATT
18778109 ATTCTGTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
15 9 0.28
16 8 0.25
17 15 0.47
ACGTcount: A:0.11, C:0.04, G:0.02, T:0.84
Consensus pattern (16 bp):
TTTTATTTTTTTTTTT
Found at i:18778106 original size:32 final size:32
Alignment explanation
Indices: 18778047--18778123 Score: 86
Period size: 32 Copynumber: 2.3 Consensus size: 32
18778037 ATTCTTTTTA
*
18778047 TCTTTATTTTATTTTTATTTTTGTTTTACTT-T
1 TCTTTTTTTTATTTTTATTTTTGTTTTA-TTAT
*
18778079 TCTTTTTTTTATTTTT-TTTATTTTTTTATTAT
1 TCTTTTTTTTATTTTTATTT-TTGTTTTATTAT
18778111 TCTGTTTTCTTTA
1 TCT-TTTT-TTTA
18778124 AATAAAAATC
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
31 5 0.13
32 26 0.67
33 4 0.10
34 4 0.10
ACGTcount: A:0.12, C:0.06, G:0.03, T:0.79
Consensus pattern (32 bp):
TCTTTTTTTTATTTTTATTTTTGTTTTATTAT
Found at i:18778296 original size:59 final size:59
Alignment explanation
Indices: 18778126--18778423 Score: 399
Period size: 60 Copynumber: 5.0 Consensus size: 59
18778116 TTTCTTTAAA
*
18778126 TAAAAATCAAAATTTCCAAAAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTTCC-AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* *
18778188 TAAAAATAAGTTT-AAAAAAAAAGGTATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTCCAAAAAAAA--TATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCT
*
18778248 TAGAAATAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* * *
18778307 TAGAAATAAATTTCC-AGAAAAATATTTTTAGGGAAAAGTTGAAAGTATCGATTTTCCT
1 TAAAAATAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
**
18778365 TAAAAATAAAATTT-CAAAAAAAAGGGTTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAAT-AAATTTCCAAAAAAAA-TATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCC
18778424 CTACACAAGA
Statistics
Matches: 214, Mismatches: 13, Indels: 20
0.87 0.05 0.08
Matches are distributed among these distances:
58 56 0.26
59 63 0.29
60 80 0.37
61 8 0.04
62 7 0.03
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (59 bp):
TAAAAATAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:18779335 original size:25 final size:26
Alignment explanation
Indices: 18779292--18779340 Score: 91
Period size: 25 Copynumber: 1.9 Consensus size: 26
18779282 CCGATCCGAT
18779292 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
18779318 CTTAGACT-GGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
18779341 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Done.