Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 108 of 117
Found at i:18779542 original size:243 final size:243
Alignment explanation
Indices: 18779107--18779558 Score: 618
Period size: 243 Copynumber: 1.9 Consensus size: 243
18779097 ATATAAGGGC
* * * * *
18779107 CAAGTACTAGCACCCATCGCAGATCATGTACGCACACCGCCCGGCCCCCCGATTGTCGAAACTCC
1 CAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCCGGCCCCCCGATCGTCGAAACCCC
* * ** * * * *
18779172 AATGCCGCTGGTCAGGTTCTCCGGTAATGCTTCGACGATGGTGTCCTAGCGAAGAAAAATGCGGC
66 AATGCCGCCGATCAGGTTCTCCGACAATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATACGGC
* * * *
18779237 ACCAGCACATGCTCGAGCCCAGCATGTGCTACTGCAACCCTCGGTCCGATCCGATCTTAGACTGG
131 ACCAGCACATGCCCGAGCCCAGCATGAGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGG
*
18779302 GAATGAACTCCGTAAGCTTAGACTGGAATGAACTCCGTATGCCTAAGT
196 AAATGAACTCCGTAAGCTTAGACTGGAATGAACTCCGTATGCCTAAGT
* * *
18779350 CAAGTACCAGCACCTATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCC
1 CAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCCGGCCCCCCGATCGTCGAAACCCC
* * * * * *
18779415 AATGCCGCCGATCAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGGTGAAGGAAAATATGGC
66 AATGCCGCCGATCAGGTTCTCCGACAATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATACGGC
* * *
18779480 ACCAGCACATGCCCGAGCCCAGCATGAGCTACCGTAACCCTCGATCC-AGTCTGATTTTAGACTG
131 ACCAGCACATGCCCGAGCCCAGCATGAGCTACCGCAACCCTCGATCCGA-TCCGATCTTAGACTG
18779544 GAAATGAACTCCGTA
195 GAAATGAACTCCGTA
18779559 TGCCTAAGTC
Statistics
Matches: 178, Mismatches: 30, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
242 1 0.01
243 177 0.99
ACGTcount: A:0.25, C:0.33, G:0.23, T:0.19
Consensus pattern (243 bp):
CAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCCGGCCCCCCGATCGTCGAAACCCC
AATGCCGCCGATCAGGTTCTCCGACAATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATACGGC
ACCAGCACATGCCCGAGCCCAGCATGAGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGG
AAATGAACTCCGTAAGCTTAGACTGGAATGAACTCCGTATGCCTAAGT
Found at i:18781278 original size:25 final size:26
Alignment explanation
Indices: 18781250--18781301 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18781240 CTGGTCTTAT
*
18781250 CTTAGACT-GGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18781275 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18781301 C
1 C
18781302 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18783041 original size:26 final size:26
Alignment explanation
Indices: 18783005--18783057 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18782995 CTGATTCGAT
**
18783005 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACAACGTATG
18783031 CTTAGACTGGGAATGAACAACGTATG
1 CTTAGACTGGGAATGAACAACGTATG
18783057 C
1 C
18783058 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACAACGTATG
Found at i:18784792 original size:26 final size:26
Alignment explanation
Indices: 18784763--18784815 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18784753 CCGGTCCGAT
18784763 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18784789 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18784815 C
1 C
18784816 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18786565 original size:26 final size:26
Alignment explanation
Indices: 18786525--18786576 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18786515 TCCGGTCCGA
*
18786525 TCTTAGACTGGGAATGAACTCCATAT
1 TCTTAGACTGCGAATGAACTCCATAT
18786551 TCTTAGACTGCGAATGAACTCCATAT
1 TCTTAGACTGCGAATGAACTCCATAT
18786577 GCCTAAGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGCGAATGAACTCCATAT
Found at i:18787767 original size:898 final size:899
Alignment explanation
Indices: 18785654--18793772 Score: 8497
Period size: 893 Copynumber: 9.0 Consensus size: 899
18785644 TCCGATCTTG
* * * * *
18785654 GACTGGGGATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCGTACGGGCGCTCAGCTGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * * *
18785719 CAGAGAGGCAGGATGCGCAACCCAGGGATCGGTCGGGTCCCCCTTTGCGTGCTGTCGATCCTGCT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * * * * * *
18785784 GCCA-CAACCCTC-AGTCCGATTCAATCTTAGATTGGGAATGAACTCTGTATGCCTAATCCAACC
131 G-CAGCAACCCTCGA-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * * ** *
18785847 GACGAAACGAGCGGGCGGGCGGGCAGACAGGCACTACGTCGGCAAGAGAGACAAGCTGCGCAAGC
194 GACGAAATGAGCAGG-AGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
18785912 TGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
18785977 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
*
18786042 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGGTTTGGGATTTTTTAAAAATTTTTT
388 CTCGTTTTC-ATTTTTCACGATTTTTGAAACTTTTTGA-GGTTTGGGATTTTTTAAAATTTTTTT
* *** * * * *
18786106 AGAAGGAGTTTTGTAGCCAAAATTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAG
451 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* *
18786171 AATTCAGCTACAAACTCAAAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
516 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
18786235 GACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
581 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGT
*
18786300 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATC
645 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
18786365 ATGTGCGCACA-CCCCCCGGCCCTCCCGATCGTCGGAAGCCCAGTGCCGCCGGTCAGGTTCTCCG
710 ATGTGCGCACACCCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC-CTG
* * * * * * *
18786429 ATGATGCTCCGGCGATGTTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGTCCTGC
773 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGC
* * *
18786494 ATGTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATTCTTA
838 ATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * * **
18786556 GACTGCGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTACAGGCGCTCAGTTGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * * * * * **
18786621 CAGAGGGGTGGGATGCACAAGCCGAGGCTCGGTCGAGTCTCCCTCTACGTGCTACCGATTTTGCT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * * * ** * * * *
18786686 GCTGTAATCCTCAAT-TCGGTTTGATCTTAGACTGGGAATGTATTCCTTATGCCTAAGCCAATCG
131 GCAGCAACCCTCGATCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * * * *
18786750 ATGAAATGA--ACG-GGCAGGCGGGCGGGCACTACACTGGCTAGAGAGACGGGATGCGCAAGCCA
195 ACGAAATGAGCAGGAGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
18786812 TGGATTGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
18786877 TATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACA
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** *
18786942 CCTTTTC-TTTTTCACGATTTTCAAAACTTTTTGAAGTTTGGGATTTTTTAAAATTTTTTTGGAA
390 CGTTTTCATTTTTCACGATTTTTGAAACTTTTTGAGGTTTGGGATTTTTTAAAATTTTTTTGGAA
* * * *
18787006 GCAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATACAC-AAAAAAGT
455 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
*
18787070 CAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
520 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
18787135 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTTG
585 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCG
*
18787200 AGGTTTGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
650 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
** * *
18787265 CGCACACCCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCCTGGCGATGC
715 CGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCCTGACGATGC
** * * * *
18787330 TTTGACGATAGTGCCCCGACGAAAAAAAATGTGACACCAACACATGCCCGAGCCCAGCATGTGCT
780 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * * * * * * *
18787395 ATCACAACCCTCGGTCTGCTCTGATTTTAGATTGAGAATGAACTCCGTACGGTTA
845 ACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
18787450 GACTGGGAATGAATTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* *
18787515 CAGAGGAGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * *
18787580 GCAGCAACCGTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
131 GCAGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* *
18787645 CGAAATGAGCAGGAGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATACGCAAGCCG
196 CGAAATGAGCAGGA-GGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
** * *
18787710 TGGATCGATAGGGTGGTAGGTGATTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
18787775 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGAGAAGTTTCATGGCAAGACGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * **
18787840 CGTTTTC-----T----ATTTTTGAAACTTTTTGCGGTTTGGGATTTTTAAAAATTTTTTCAGAA
390 CGTTTTCATTTTTCACGATTTTTGAAACTTTTTGAGGTTTGGGATTTTTTAAAATTTTTTTGGAA
* * * *
18787896 AGAGTTTTGGCCCCATACTTGGTAGACGTGATCCTCGTATTTTTGTTGGCATGCACAAAAAAATT
455 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
*
18787961 CAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
520 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
18788026 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTC
585 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTCTC
* *
18788091 GAGGCTTT-ATGAGGGATAGGGGGCCAATACAAGGGCCAAGTACCAGCACCCATTGCACATCATG
649 GAGG-TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
18788155 TGCACACACCCCCCCGGCCCACCCGATCGCCGGAACCCTAATGTCG-C--T--GG-T-C--A-GA
713 TGCGCACACCCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCCTGACGA
* * * * * *
18788210 TTCTCCGACGATGGTG-CCCTAGCAAAGAAAAATACGACACCAGCACCTG-TCGAAGCCCAGCAT
777 TGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGACACCAGCACATGCCCG-AGCCCAGCAT
** *
18788273 GTGCTGTCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
840 GTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
18788333 GATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGAGTGCGGGTGCTCAGCTGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * **
18788398 CAGAGGGGTGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTTGATCCTGCT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * * * ** * *
18788463 GCCGCAACCCTCCATCGGGTCTGATCTTAGACTATGAATGAACTCCGTATGCTTAAGCCAACTGA
131 GCAGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * *
18788528 CGAAA--CG-AGTAGGCGGACGGGCGGGCACTACGCCGGCCAGAGACACGGGATGCGCAAGCCGT
196 CGAAATGAGCAGGAGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
*
18788590 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTTGCATGCCAATGCCATTTT
261 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCATGCCAATGCCATTTT
* *
18788655 TATGGCTGGTAAATCCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** * * *
18788720 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGGTTCAGGATTTTTTCAAA-CTTTTTAG
390 CGTTTTC-ATTTTTCACGATTTTTGAAACTTTTTGA-GGTTTGGGATTTTTTAAAATTTTTTTGG
*
18788783 AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
453 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
* *
18788848 TTCAGCTAAAAACTCGAAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCTCATTTTAGA
518 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
18788912 CACTTTAATGGCTACTGGCAGCAGACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
583 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTC
18788977 TCGAGGTTTGATGAGGGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
647 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * * * *
18789041 GTGCGCAGACCCCCCCGACCCTCCGATCGTCGGAACCCCAATACCGACGATCAAGTTCCCCGACG
712 GTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT-CCTGACG
* ** ** * *
18789106 ATGCACCGGTGATGGTGCCCTAACGAAGAGAAATGCGACCCCAGCACATGCCCGAGCCCAGCATG
776 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATG
* * * * *
18789171 TGCTACCGCAACCCTCGATCCAGTCAGATCTTAGACTAGGAATGAACTCCGTATGCCTA
841 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
** * * * * *** * * * *
18789230 -A----G--CCAA--CCG-A---CGAAATGAGCGGGC-AGACGGGCGGGCGGGCACT-ATGCCGG
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-GCCGG
* ** ** * * ****** *
18789280 CCAGAGGGACTAGATGCGCAAGCCATGGATTGATAGGGT-GGTAGGTGGGTTTAGGC-GCATC-A
65 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCG--T--GCTGC--CGA
* * ** ** * * * *** *
18789342 TCCTATTTCTGCATGCCAATGCCATTTTTATGGCTGGT-AAATCCATACAATGGTCCCTTAAGCC
124 TCC---TGCTGCA-G-CAA--CC--CTCGAT--CTGGTCCGAT-CTTAGACTGG-GAATGAA--C
* ** * * * * *** ***** ** ** *
18789406 TTCACGTGAAGTTTCATGGCAA--GATGACTCATTTTCTATTTTTCACGATCTTAGATTGGTCTG
174 -TC-CGT-ATGCCT-AAGCCAACCGACGA--AATGAGC-A--GGAGGCGGGC--AG-GCGGGC--
* ** ** * * * * * *
18789469 ATCTTA-GACTGGGAATGA-ACTCCGTATGCTTAAGCCAA-CCGATGAAACGAGCAGGCG-GGCA
225 A-C-TACG-CCGGCCA-GAGAGACGGGATGC----G-CAAGCCG-TGGATCGA-TAGG-GTGGTA
* ** * *** ** ** * ** * ** *
18789530 GGCGGG-CGACGGCCAGATAGACGGGA-CGC-GCAAG-CTGTGGATCGATAGGGTGGTAGGTGGG
278 GGTGGGTTTA-GG-CACATCTTC-ATATTTCTGCATGCCAAT-G--CCAT----TTTTA--TGGC
* * * * * * *
18789591 TT-TATGCACATCTTCATATTTCTAT-GTGCC-GATGCCATTTTTATGGCTTGTAAATTCATACA
331 TTGTA---A-A--TTCATA---CAATGGTCCCTTAAGCC---TTCA---CGTG-AAGTT--T-C-
* * *
18789653 ATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTGCATGATT
376 ATGG---C--AAGAC--GAC-T--CGTTT--T-------C-A-T--TTTTC-A-----C--GATT
* * * *
18789718 TTTGAAACTTTTTGTGGTTTGAGATTTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAATT
410 TTTGAAACTTTTTGAGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTT
** * * **
18789783 TTTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCATTTAAAAACTCGAAGTGT
475 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
18789848 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGC
540 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* **
18789913 AAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGACAAGGGATAGG
605 AAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
18789978 GGAG-CAATACAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCGCCCCCGGCC
669 GG-GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGGCC
* * * * *
18790042 CCTCCGATCGTCAGAACCCCAATGCCGCCTGTCAGGTTCTCTGGCGATGATCTGACGATGGTGCC
732 CC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC-CTGACGATGCTCCGACGATGGTGCC
*
18790107 CCGACGAAGAAAAAT--G----C-G---A----C-A--CCAGCATGTGCTACCG-ACACCCTTGG
795 CCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCA-ACCCTCGG
* *
18790154 TCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTA
859 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * **
18790195 GACTGGTAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCGCGGGCGCTCAGTTGG
1 GACTGG-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * ** ** * ** * *
18790260 CCAGAGGGGCGGGATGTGCAAGCCGGGAATCGGCCTAGTCCCCCTATAAGTGCTGCTGATCCTCC
65 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * *
18790325 TAGCA-CAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCGTAAGCCAACC
130 T-GCAGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* *
18790389 GACG-AA--A-C--GA-GCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCC
194 GACGAAATGAGCAGGAGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
18790447 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATACCAATGCCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
18790512 TTATGGCTTGTAAATTCATACGATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * * * *
18790577 TCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGATGTTCGAGAATTTTTAAAATTTTTTCGG
389 TCGTTTTC-ATTTTTCACGATTTTTGAAACTTTTTGAGGTTTGGGATTTTTTAAAATTTTTTTGG
* * *
18790642 AAGGAGTTTTGGCCCGAAACTTGGTAGACGTGATCCTTGTATTCTTTTTAGCATGCACAAAAAAA
453 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
* * *
18790707 TTCAGCTAAAAACACGGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCATTT----
518 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
18790768 CA---T--T-GCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGTGAGT
583 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA--GGG-GTGTGAGT
*
18790827 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA-CTACCCATCGCACAA
645 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC-ACCCATCGCACAT
* * *
18790891 CATGTGCGCACA-CCCCCCGGCCCCCCCGATCATCGGAA-CCCAATGCCGTCGGTCAGGTTCTTC
709 CATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCCT-
* * * * * *
18790954 GACAATGCTCCGGA-GATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCTCAAGCCTA
772 GACGATGCTCC-GACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCA
* * * * * * *
18791018 GCATGTGCTGCTGTAACCCGCGGTCTGGTCCGATC-TAGACTGGCAATGAACTCCGTATGGTTA
836 GCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
18791081 GACTGGGAAAGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * ** * * * * *
18791146 CAAAAGGGCAGGATGCGCAAGTTGAGGATCG-GCTGGGTCCCCCTCTGCATGCTGTCGATCCTAC
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * * * * *
18791210 TGCCGCAACCCTCGATGTGGTCTGATCTTAGACTGGGAATGAACTCCGTATTCCTAAACCAATCG
130 TGCAGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * *
18791275 ACAAAATGAGC-GGATGGACGGGCGGGCGGG-AGTACGCCGGCTAGAGAGACGGGATGCGCAAGT
195 ACGAAATGAGCAGGA-GG-CGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* **
18791338 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGTGTGCCAATGCCATT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * *
18791403 TTTATTGCTTGTAAATTTATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
18791468 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG-CGTTCGAGATTTTTTAAAATTTTTTCG
388 CTCGTTTTC-ATTTTTCACGATTTTTGAAACTTTTTGAGGTTTGGGATTTTTTAAAATTTTTTTG
* * * * **
18791532 AAAGGATTTTTCGCCCCAAACTTGGTAGACGTGATTCTTCCATTTTTTTTGGCATGCACAAAAAA
452 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
* **
18791597 ATTCA-CTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTTCATTTCAG
517 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
18791661 ACACTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTT
582 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTT
* * * *
18791726 CTTGAGGTTTGATAAGGGATAGAGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
646 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * *
18791791 TATGCACACA-CCCCCCGGCTCCTCGATCGTCGGAACCCCATTACCGCCGATCAGGTTCTCTGAC
711 TGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC-CTGAC
** * * *
18791855 GATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGAAT
775 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCAT
* * * * * * *
18791920 ATGCTGCCGTAACCTTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTA
840 GTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
18791980 GACTGGGAATGAACTCCGTATGCCTGAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCAGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * * * *
18792045 CAGTGGGGCGTGATGCGTATGCCGGGGATC-AGTCGGGTCCACTTCTACGTGCTACCGATCCTGC
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* ** * * * *
18792109 TGCCGCAACCCTCGATCCAGTTCAATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACCG
130 TGCAGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
18792174 AAGAAACGAGCGAGTAGGCGGGCAGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
195 ACGAAATGAGC-AGGAGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * * ***
18792239 GTAGATCGATAGGGTGGTAGGTGGCTTTAGGCACCTCTTCATATTTTTATGTGCCAATGCCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
18792304 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
18792369 TCATTTTTTATTTTTCATGATTTTTGAAACTTTTT-ATGGTTTGAGATTTTTTAAAATTTTTTCA
389 TC-GTTTTCATTTTTCACGATTTTTGAAACTTTTTGA-GGTTTGGGATTTTTTAAAATTTTTT-T
** * *
18792433 AAAAGG-GTTTTGTCCCCAAACTCGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCACAAAA
451 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAA
* * *
18792497 AAATTCAGCTAAAAATTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
515 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
18792562 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAG
580 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAG
* **
18792627 TTCTCGAGGTTTGATGAGTGATAGAAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
644 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
18792692 CATGTGCGCACA-CCCCCCGGCCCCACCAATCATCGGAACCCTAATGCCGCCGGTTAGG----T-
709 CATGTGCGCACACCCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCCTG
* *
18792751 ----T-CTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
773 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGC
* * * *
18792811 ATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGAATGGGAATGAACTCCATATGCTTA
838 ATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
** * *
18792873 GACTGGGAATGAACTCTATATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * * * * *
18792938 CAGTGGGGCGCGATGCGTATGCCAGAGATCAACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * ** * * *
18793003 ACCA-CAACCCT-TACTCCAGTTCGATCTTAGACTGTGAATGAACTCCATATGCCTAAGCCAACC
131 -GCAGCAACCCTCGA-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * *
18793066 GACGAAA-CAACTAGCCAGGCGAGCAGGCGGGCACTACGCCGGCCAGAAAGACAGGATGCGCATG
194 GACGAAATGAGC-AG-GAGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
*
18793130 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
257 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
18793195 TTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTTTCATGGCAAGACG
322 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
18793260 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTC
387 ACTCGTTTTC-ATTTTTCACGATTTTTGAAACTTTTTGAGGTTTGGGATTTTTTAAAATTTTTTT
** * ** *
18793325 GGAAGGAGTTTT-GCCCTGATCTTGGTAGTTGTGATCCTTGTATTTTTTTTGGCATGCATAAAAA
451 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* *
18793389 AATTCACCTAAAAACTCGAAGTGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
516 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
18793454 GACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGT
581 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGT
* ** * *
18793519 TCTCAAGGTTAAATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATTGCACATC
645 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
18793584 ATGTGTGCACACCCCCCCGACCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
710 ATGTGCGCACACCCCCCCG--GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC-CT
* * * *
18793649 GGCGATGCTCCG-TGATGGTGCCCCGACGAAGAAAAATGTGACACCAGAACATGCCCGAGCCCAG
772 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAG
* * *
18793713 CATGTGCTATCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGC
837 CATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
18793773 CTAAGCCAAC
Statistics
Matches: 6004, Mismatches: 926, Indels: 573
0.80 0.12 0.08
Matches are distributed among these distances:
869 1 0.00
870 52 0.01
871 56 0.01
872 12 0.00
873 76 0.01
874 1 0.00
876 1 0.00
877 3 0.00
879 85 0.01
880 93 0.02
881 154 0.03
882 10 0.00
883 314 0.05
884 11 0.00
885 153 0.03
886 61 0.01
887 94 0.02
888 124 0.02
889 105 0.02
890 177 0.03
891 418 0.07
892 327 0.05
893 568 0.09
894 277 0.05
895 149 0.02
896 200 0.03
897 125 0.02
898 531 0.09
899 202 0.03
900 220 0.04
901 64 0.01
902 198 0.03
903 301 0.05
904 40 0.01
906 3 0.00
908 2 0.00
910 4 0.00
911 4 0.00
912 2 0.00
913 4 0.00
915 5 0.00
916 5 0.00
917 14 0.00
918 2 0.00
919 3 0.00
920 3 0.00
921 10 0.00
922 19 0.00
923 19 0.00
924 9 0.00
925 2 0.00
926 1 0.00
928 8 0.00
929 4 0.00
930 7 0.00
932 1 0.00
933 1 0.00
934 4 0.00
935 12 0.00
936 21 0.00
937 16 0.00
938 7 0.00
939 3 0.00
941 2 0.00
942 17 0.00
943 6 0.00
944 1 0.00
945 1 0.00
946 4 0.00
947 5 0.00
949 3 0.00
950 1 0.00
952 4 0.00
954 2 0.00
955 2 0.00
957 4 0.00
958 1 0.00
959 6 0.00
960 3 0.00
961 5 0.00
962 2 0.00
963 1 0.00
964 1 0.00
965 60 0.01
966 15 0.00
967 5 0.00
968 4 0.00
969 5 0.00
970 3 0.00
972 4 0.00
973 2 0.00
974 3 0.00
975 8 0.00
976 2 0.00
977 38 0.01
978 95 0.02
979 123 0.02
980 96 0.02
981 13 0.00
982 59 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (899 bp):
GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
GCAGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAATGAGCAGGAGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCATTTTTCACGATTTTTGAAACTTTTTGAGGTTTGGGATTTTTTAAAATTTTTTTGGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCCTGACGATGCT
CCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTA
CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
Found at i:18788332 original size:26 final size:26
Alignment explanation
Indices: 18788303--18788355 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18788293 CCGGTTCGAT
18788303 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18788329 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18788355 C
1 C
18788356 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18790212 original size:27 final size:26
Alignment explanation
Indices: 18790165--18790218 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
18790155 CTGGTCCGAT
*
18790165 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
*
18790191 CTTAGACTGGTAAATGAACTCCGTATG
1 CTTAGACTGG-AAATGAACTCCATATG
18790218 C
1 C
18790219 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 10 0.40
27 15 0.60
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:18791082 original size:26 final size:26
Alignment explanation
Indices: 18791053--18791102 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
18791043 TGGTCCGATC
*
18791053 TAGACTGGCAATGAACTCCGTATGGT
1 TAGACTGGCAAAGAACTCCGTATGGT
* *
18791079 TAGACTGGGAAAGAACTTCGTATG
1 TAGACTGGCAAAGAACTCCGTATG
18791103 CCTAAGTCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (26 bp):
TAGACTGGCAAAGAACTCCGTATGGT
Found at i:18791979 original size:26 final size:26
Alignment explanation
Indices: 18791950--18792002 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18791940 CCGGTCTGAT
*
18791950 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18791976 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18792002 C
1 C
18792003 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18792879 original size:26 final size:26
Alignment explanation
Indices: 18792843--18792895 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18792833 CCGGTCCGAT
18792843 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
* *
18792869 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGAATGGGAATGAACTCCATATG
18792895 C
1 C
18792896 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:18793044 original size:893 final size:892
Alignment explanation
Indices: 18779536--18793772 Score: 14535
Period size: 896 Copynumber: 16.0 Consensus size: 892
18779526 CAGTCTGATT
* * * *
18779536 TTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTAAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * ** * **
18779601 GGCCAGA-GGGTGGGATACGCAAGTCGGGGATCGACCGGGTCCCCCTCTACGTGCTATCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
** * * * * * *
18779665 GCTGCTGCAACGCTCAGTCCAGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAAC
131 GCTGCCACAACCCTTAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * * * *
18779730 TGACGAAACGGGTGGGCGGGTGGG-TGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAG
196 CGACGAAACGAGCGAGCAGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *
18779794 CCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATACCAATGTCAT
261 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
18779859 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGGGAGGTTTCATGGCAAGACG
326 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
18779924 ACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTGAGATTTTATAAAATTTTTTC
391 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTC
* * *
18779989 GGAAGGAGTTTTGGCCCCAAACTTGGTGGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAA
456 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
*
18780054 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCA
521 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
18780119 GACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGT
586 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
18780183 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAGATC
651 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * *
18780248 ATGTACGCACACCGCCCGGCCACCCGATTGTCGAAACCCCAATGCCGCTGGTCAGGTTCTC-CGG
716 ATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGCGA
* * * * *
18780312 CGATGGTG-TCCTAGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACTG
781 TGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCG
18780376 CAA-CC-C--T-C-G---G----T---C------TG-A-TCCG-AT-C
845 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
18780398 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCACTC-GTC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* ** ** * *
18780462 GGCCAGAGGGACGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTATGTGTTGTCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * * *
18780527 GCTGTCACAACTCTCAATCCGG-TCTGATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 GCTGCCACAACCCTTAGTCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18780591 CCAACG-AA--A-C--G-A-GC-GG-A--CGGGCACTACGTCGGCCAGAGAGGCGGGATGTGC-A
195 CCGACGAAACGAGCGAGCAGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* ***
18780643 GCCGTGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
18780708 TTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCGTCACGTGAAGTTTCATGGCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
18780773 GACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGGTTTTTTAAAATTTTTT
390 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTT
* *
18780838 CGAAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAA
455 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* *
18780903 AAATTCAGCTAAAAAGTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * * * *
18780968 AGACACTTTATTGGCTACTGGCAGCAAACCTATAAAATCCCCAATGCTCTTTAAAGGGGTGTAAG
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
18781033 TTCTTGAGGTTTGATGAGGGATAGCGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACAC
650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
18781098 CATGTGAGCACA--------CCCCCCGATCGTCGGAACCCCAATGCCACCGATCAGGTTCTCCGA
715 CATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-CG-
* **
18781155 CGATGCTCTAGCGATGGTGCCCCGACGAAGAAACATGCGGCACCAGCACATGCCCGAGCCCATTA
778 CGA-----T---GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
** * * ** *
18781220 TGTGCTGTCGTAACCC-CGGTCTGGTCTTATCTTAGACT-GGAATGAACTCTGTATGC
835 TGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
** * *
18781276 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGTGCTTAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * *
18781341 GGCCAGAGGGGTC-AGATGCGCAAGCCGGGGATCAGTCAGGTCCTCCTCTACATGCTG-CGATCC
66 GGCCAGAGGGG-CGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** * * * *
18781404 TACTGCCACAACCC-TCGATCCAGCCCTATCTTAGA-TTGGAATGAACTCTGTATGCCTAAGCGA
130 TGCTGCCACAACCCTTAG-TCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
18781467 ACCGACGAAACGAGTGGGC-GGACGGGCGGGTGGGCACTATGCCGACCAGAGAGACGAGATGCGC
194 ACCGACGAAACGAGCGAGCAGG-CGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
18781531 AAGCCGTGGATTGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGC
258 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
18781596 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGTC-A
323 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG-CAA
* * * *
18781660 GACGACTCATTTT-TAATTTTTCACGATTTTTGAAACATTTTATGGTTCGAGATTTTTTAAAATT
387 GACGACTCGTTTTCT-ATTTTTCACGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATT
* *
18781724 TTTTC-AGAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTA-TTTTTTTGGCATGCA
451 TTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
* * *
18781787 C-AAAAAATTCAGGTAAAAACTTGAAGTGTACAAGA-TTTGTGACCATTTGAAAATAGTGTCCCC
515 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
18781850 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGTGGT
580 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * *
18781915 GTGAGTTATCGAGGTTTGAAGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGTACCCATCG
645 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
18781980 CACATCATGTGCGCACACCCCCCCGGCCCCCGCGATTGTCGAAACCCCAGTGCCACCAGTCAGGT
710 CACATCATGTGCGCACA-CCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * **
18782045 TCTCCGACGATGCTCCGACGATCTTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCTTAG
773 TCT-CG-CGATGAT--G--G----TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
**
18782110 CCCAGCATGTGCTACCGTGA-CC-C--T-C-G---G-TC-----C--GG--T---CT--G-AT-C
828 CCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
18782149 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAACC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* ** * * *
18782214 GGCCAGAGGAATG-GGGATGCGCAAGTTGGGGATCGATCGGGTCCCCC-CTACGTGCTACCGATC
66 GGCCAGAGG--GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * * *
18782277 CTACT-ACAGTAACCC-TCGATCTGGTCCGATCTTAGACTGGGAAAGAACTCCGTATGCCTAAGC
129 CTGCTGCCA-CAACCCTTAG-TCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* ** * * ** *
18782340 CAACCGATGAAACGAG-G-G--GGCGAACGGGCAGGCACTACATCGGCTAGAGAGACGGGATGCG
192 CAACCGACGAAACGAGCGAGCAGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
** **
18782401 TTAGCCGTGGATCGA-ATGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAT
257 CAAGCCGTGGATCGATA-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
18782465 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
321 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * * *
18782530 AGACGACTTGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTATAAAATT
386 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATT
* *
18782595 TTTTC-AGAAGGAGTTTTGG--CC---C----TAAAC----TCCTTGTATTTTTGTTGGCATGCA
451 TTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
* *
18782646 CAAAAAAATTCAACTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
515 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
18782711 ATTTCATACACTTTAAT-TCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGT
580 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
18782774 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
645 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
18782839 CACATCATGTGCGCACACCCCTCGGCCCCCCGATCGTCGAAATCCCAATGCCGCCGGTCAGGTTC
710 CACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * * *
18782904 TCCGGTGATGCTCTGATGATGGTGTCCCGACGAAAAAAAATACGGCTCCTGCACACGCTCGAGCC
775 T-C------G--C-GATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * * *
18782969 CAGCATGTGCTGCTGCATCCCTCAGTCTGATTCGATCTTAGACTGGGAATGAACTCCGTATGC
830 CAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
** * ** *
18783032 TTAGACTGGGAATGAACAACGTATGCCTAAGTCGACCCACGAAGTGAGCGTGCGGGCGCTCAGTC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* ** ** * * *
18783097 GGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTATGTGTTGTCGAACCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* ** * * * * * * * *
18783162 GCTACCACAACTATCAGTCCAGTCCGATATTAGACTCGAAATGAACTCCATATGCCTAAGCCAAT
131 GCTGCCACAACCCTTAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* ** * * ***
18783227 CGAC-AAA--A-CGAGCGGGTTGGCGGGCGGGCACTATGCCGGCCAGAGATG-CGGGACATGC-A
196 CGACGAAACGAGCGAGCAGGCGGGCAGGCGGGCACTACGCCGGCCAGAGA-GACGGGATGCGCAA
*** *
18783286 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTTGTACCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
18783351 TTTTTATGGCATGTAAATTCATACAATGGT-CTTTAAGCCGTCACGTGAAGTTTCATGGCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
18783415 GACTCGTCTTT-TATTTTTCACGATTTTTAAAACTTTTTACGGTTTAGGG-TTTTTTAAAATTTT
390 GACTCGT-TTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTT-GGGATTTTTTAAAATTTT
* * * * *
18783478 TTTGAAAGGAGTTTTAGTCCCAAACTTGGTAGACGAGATCCTTGTATTTTTGTTGGCATGCACAA
453 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
* * *
18783543 AAAAATTCAGTTAAAAACTCAAAGTGTACAAGATTTTGTGACGATTTGAAAAAAGTGTCCCCATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
18783608 GCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCCAATGCTCTTTAAGGGGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18783673 AGTTCTCGAGGTTTGATGAGGGATAGCGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAA
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * **
18783738 ACCATGTGAGCACA--------CCCCCCGATCGCCGGAACCCCAATGTCGCTAGTCAGGTTCTCC
713 ATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C
** ** * *
18783795 GACGATGCTCCAGTGATGATGCCCCGGTGAAGAAACGTGCGGCACCAGCTCATGCCCGAGCCCAA
777 G-CGATG----A-TG--G-TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
18783860 CATGTACTATCGCAA-CC-C--T-C-G---G----T---CT--G---G---TCC-TAT-C
833 CATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
18783894 TTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTTAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * ** *
18783959 GGCCAGAGGGGCTGGATGCGCAAGCTGGGGATCGGTCGGGTCCCTCTCTGCATGCTGTAGATCTT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * *
18784024 GCTGCCGCAACCCTTGGTCCGGTAT-AATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
131 GCTGCCACAACCCTTAGTCCGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** ** * *
18784088 CTGAC-AAA--A-CGAGTGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGATGAGATGCGCAA
195 CCGACGAAACGAGCGAGCAGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
18784149 GGCATGGATTGATAGGGTGGCAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
18784214 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGATGTTTCATGGCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
18784279 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-TCAGTTCGGGATTTTTTAAAATTTTT
390 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAT-GGTTTGGGATTTTTTAAAATTTTT
* *
18784343 TC-AGAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAA
454 TCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
* * *
18784407 AAAAATTCACCT--AAACTTGAAGTGTACAAGA-TTTGTGACCATTTGAAAATAGTGTCCCCATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18784469 TCAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
18784534 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
18784599 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAGTGCCACCGGTCAGGTTCTC
713 ATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * **
18784664 TGACGATGCTCTGACGATGTTGCCCCAACGAAGAAAAATGCGGCACCAGCACAAGCCTTAGCCCA
777 -G-CGA-----T---GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* **
18784729 ACATGTGCTACCGTGACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
832 GCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
18784790 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGTGTGTGCGGGCGCTCAACC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * ** ** ** *
18784855 GGCCAAAGGAGCGGGATGGGCAAGCTGGGGATCGACCGGGTCCCTTTCTATGTGCTGCTGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * ** * * *
18784920 ACT-ACAGTAACCCTCGGTCTGGTCCGATCTTAGACTGGCAATGAACTCCGTATGCCTAAGCCAA
131 GCTGCCA-CAACCCTTAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** * *
18784984 CCGATGAAACGAGC---CA-GCGGGCGGGCGGGCACTACGTCGGCTTGAGAGATGGGATGCGTAA
195 CCGACGAAACGAGCGAGCAGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
18785045 GCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
18785110 TTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * **
18785175 AACTCGTTTTTTATTTTTCAC-ATTTTTGAAACCTTTTGCT-GTTTGGGATTTTTTAAAATTTTT
390 GACTCGTTTTCTATTTTTCACGATTTTTGAAA-CTTTTTATGGTTTGGGATTTTTTAAAATTTTT
* * * * *
18785238 TTGAAAGGAGTTTTGGTCCCGAACTTGTTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AA
454 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
*
18785302 AAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
18785367 CAGACACTTTAATGGCTACT-GCAGTAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGA
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
18785431 GTTCTCAAGGTTTGATGAGGGATAGCGGGCCAATATAAGGGCCAAGTACCAGCGCCCATCGCACA
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
18785496 CCATGTGAGCACA--------CCCCCCGATCGCCGGAACCCTAATGCCGCCGGTAAGGTTCTCCA
714 TCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C-
** * *
18785553 GCGATGCTCCGGCGATGGTGCCCC-AGCGAAGAAACGTGCAGCACCAGCACATGCCCAAGCCCAG
777 GCGA---T-----GATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
18785617 CATGTGCTGCTGCAACCCTCGGCCCGGTCCGA---T---CT-----TG------G-A--C
833 CATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
18785657 -T-G---GGG-ATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCGTACGGGCGCTCAGCT
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * *
18785716 GGCCAGAGAGGCAGGATGCGCAACCCAGGGATCGGTCGGGTCCCCCTTTGCGTGCTGTCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * * * *
18785781 GCTGCCACAACCCTCAGTCCGATTCAATCTTAGATTGGGAATGAACTCTGTATGCCTAATCCAAC
131 GCTGCCACAACCCTTAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * ** *
18785846 CGACGAAACGAGCGGGCGGGCGGGCAGACAGGCACTACGTCGGCAAGAGAGACAAGCTGCGCAAG
196 CGACGAAACGAGCGAGCAGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
18785911 CTGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
261 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
18785976 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
326 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
18786041 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAAATTTTTT
391 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTTGGGATTTTTT-AAAATTTTTT
* *** * * *
18786106 AG-AAGGAGTTTTGTAGCCAAAATTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAA
455 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * *
18786170 GAATTCAGCTACAAACTCAAAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
18786234 AGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
18786299 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACAT
650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
18786364 CATGTGCGCACACCCCCCGGCCCTCCCGATCGTCGGAAGCCCAGTGCCGCCGGTCAGGTTCTC-C
715 CATGTGCGCACACCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGC
* * *
18786428 GATGATGCTCCGGCGATGTTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGTCCTG
779 GATGA---T-----G--G-TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
18786493 CATGTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATTC
833 CATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * **
18786553 TTAGACTGCGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTACAGGCGCTCAGTT
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * * * **
18786618 GGCCAGAGGGGTGGGATGCACAAGCCGAGGCTCGGTCGAGTCTCCCTCTACGTGCTACCGATTTT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
*** * * * * * * * * *
18786683 GCTGCTGTAATCCTCAATTCGGTTTGATCTTAGACTGGGAATGTATTCCTTATGCCTAAGCCAAT
131 GCTGCCACAACCCTTAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * *
18786748 CGATGAAATGAACGGGCAGGC--G--GGCGGGCACTACACTGGCTAGAGAGACGGGATGCGCAAG
196 CGACGAAACGAGCGAGCAGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
18786809 CCATGGATTGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
261 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
18786874 TTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
326 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * ** *
18786939 ACACCTTTTC--TTTTTCACGATTTTCAAAACTTTTTGA-AGTTTGGGATTTTTTAAAATTTTTT
391 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ATGGTTTGGGATTTTTTAAAATTTTTT
* * * * *
18787001 TGGAAGCAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATACAC-AAA
455 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* *
18787065 AAAGTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
18787130 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAG
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
18787194 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCAGCACCCATCGCACAT
650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** *
18787259 CATGTGCGCACACCCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCCTGG
715 CATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT-CT--
* * * * * *
18787324 CGATGCTTTGACGATAGTGCCCCGACGAAAAAAAATGTGACACCAACACATGCCCGAGCCCAGCA
776 C---GC---GATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * * * * * *
18787389 TGTGCTATCACAACCCTCGGTCTGCTCTGATTTTAGATTGAGAATGAACTCCGTACGG
835 TGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
18787447 TTAGACTGGGAATGAATTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * *
18787512 GGCCAGAGGAGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * *
18787577 GCTG-CAGCAACCGTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 GCTGCCA-CAACCCTTAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18787641 CCGACGAAATGAGC-AGGAGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATACGCA
195 CCGACGAAACGAGCGAGCA-GGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
** * *
18787705 AGCCGTGGATCGATAGGGTGGTAGGTGATTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
18787770 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGAGAAGTTTCATGGCAAGA
324 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** *
18787835 CGACTCGTTTTC------T----ATTTTTGAAACTTTTTGCGGTTTGGGATTTTTAAAAATTTTT
389 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTT
* * *
18787890 TCAGAAA-GAGTTTTGGCCCCATACTTGGTAGACGTGATCCTCGTATTTTTGTTGGCATGCACAA
454 TC-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
18787954 AAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
18788019 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18788084 AGTTCTCGAGGCTTT-ATGAGGGATAGGGGGCCAATACAAGGGCCAAGTACCAGCACCCATTGCA
648 AGTTCTCGAGG-TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * * *
18788148 CATCATGTGCACACACCCCCCCGGCCCACCCGATCGCCGGAACCCTAATGTCGCTGGTCAGATTC
712 CATCATGTGCGCACA-CCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * * *
18788213 TC-CGACGATGGTG-CCCTAGCAAAGAAAAATACGACACCAGCACCTG-TCGAAGCCCAGCATGT
775 TCGCGATGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCG-AGCCCAGCATGT
** *
18788275 GCTGTCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
838 GCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
18788330 TTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGAGTGCGGGTGCTCAGCT
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * **
18788395 GGCCAGAGGGGTGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTTGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * ** *
18788460 GCTGCCGCAACCCTCCA-T-CGGGTCTGATCTTAGACTATGAATGAACTCCGTATGCTTAAGCCA
131 GCTGCCACAACCCT-TAGTCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
18788523 ACTGACG-AA--A-CGAGTAGGCGGACGGGCGGGCACTACGCCGGCCAGAGACACGGGATGCGCA
194 ACCGACGAAACGAGCGAGCAGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
18788584 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTTGCATGCCAATGC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCATGCCAATGC
* *
18788649 CATTTTTATGGCTGGTAAATCCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
323 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** * *
18788714 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTCAAACTTT
388 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTT
* *
18788779 TTAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAA
453 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
18788843 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCTCATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18788907 TTAGACACTTTAATGGCTACTGGCAGCAGACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
18788972 AGTTCTCGAGGTTTGATGAGGGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCCATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * * * *
18789036 ATCATGTGCGCAGACCCCCCCGACCCTCCGATCGTCGGAACCCCAATACCGACGATCAAGTTCCC
713 ATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT-CT
** * * *
18789101 CGACGATGCACCGGTGATGGTGCCCTAACGAAGAGAAATGCGACCCCAGCACATGCCCGAGCCCA
776 CG-C---G-A----TGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
18789166 GCATGTGCTACCGCAACCCTCGATCCAGTCAGATCTTAGACTAGGAATGAACTCCGTATGC
832 GCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* ** * * * * *** * * * *
18789227 CTA-A----G--CCAA--CCG-A---CGAAATGAGCGGGC-AGACGGGCGGGCGGGCACT-ATGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-GC
* ** * * * ***** **
18789277 CGGCCAGAGGGACTAGATGCGCAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCGCAT-C
65 CGGCCAGAGGGGCGGGATGCGCAAGCC--GG--GGAT-CGGTCG--GGTCCCCCTCTGCG--TGC
* * * * * * ** * * * *** *
18789341 AT-CCTATTTCTGCATGCCA-ATGCCATTTTTATGGCTGG-TAAATCCATACAATGGTCCCTTAA
121 -TGCCGA-TCCTGC-TGCCACA-ACC---CTTA-GTCCGGTTCGAT-CTTAGACTGG-GAATGAA
* ** * * ** * ** * ***** ** ** *
18789403 GCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCA--CGATCTTAGATTGGT
176 --C-TC-CGT-ATGCCT-AAGCCAA-CCGAC-GA--AACGAGCGAGCAGGCGGGC--AG-GCGGG
* ** ** * * * * *
18789466 CTGATCTTA-GACTGGGAATGA-ACTCCGTATGCTTAAGCCAA-CCGATGAAACGAGCAGGCG-G
228 C--A-C-TACG-CCGGCCA-GAGAGACGGGATGC----G-CAAGCCG-TGGATCGA-TAGG-GTG
* * ** * *** ** ** * ** * **
18789527 GCAGGCGGG-CGACGGCCAGATAGACGGGA-CGC-GCAAG-CTGTGGATCGATAGGGTGGTAGGT
279 GTAGGTGGGTTTA-GG-CACATCTTC-ATATTTCTGCATGCCAAT-G--CCAT----TTTTA--T
* * * * * * * *
18789588 GGGTT-TATGCACATCTTCATATTTCTAT-GTGCC-GATGCCATTTTTATGGCTTGTAAATTCAT
332 GGCTTGTA---A-A--TTCATA---CAATGGTCCCTTAAGCC---TTCA---CGTG-AAGTT--T
* * * *
18789650 ACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTGCATG
379 -C-ATGG---C--AAGAC--GAC-T--CGTTT--T-------CTA-T--TTTTC-A-----C--G
* * * * *
18789715 ATTTTTGAAACTTTTTGTGGTTTGAGATTTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA
412 ATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAA
* ** * * **
18789780 ATTTTTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCATTTAAAAACTCGAAG
477 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
18789845 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGC
542 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * **
18789910 AGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGACAAGGGAT
607 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
18789975 AGGGGAG-CAATACAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCGCCCCCG
672 AGGGG-GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCCCCG
* *
18790039 GCCCCTCCGATCGTCAGAACCCCAATGCCGCCTGTCAGGTTCTCTGGCGATGATCTGACGATGGT
734 GCCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC--GC---GA--T---GATGGT
18790104 GCCCCGACGAAGAAAAAT---G---C-G---A----C-A--CCAGCATGTGCTACCG-ACACCCT
788 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCA-ACCCT
* * *
18790151 TGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGC
852 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
18790192 TTAGACTGGTAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCGCGGGCGCTCAGT
1 TTAGACTGG-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** * ** *
18790257 TGGCCAGAGGGGCGGGATGTGCAAGCCGGGAATCGGCCTAGTCCCCCTATAAGTGCTGCTGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
18790322 TCCTAG-CACAACCC-TCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCGTAAGCC
130 TGCT-GCCACAACCCTTAG-TCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
*
18790385 AACCGACGAAACGAGC--G--GGC--G--GGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGC
193 AACCGACGAAACGAGCGAGCAGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
18790442 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATACCAATGC
258 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
18790507 CATTTTTATGGCTTGTAAATTCATACGATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
323 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * * *
18790572 ATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGAT-GTTCGAGAATTTTTAAAATTT
388 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ATGGTTTGGGATTTTTTAAAATTT
* * * *
18790636 TTTCGGAAGGAGTTTTGGCCCGAAACTTGGTAGACGTGATCCTTGTATTCTTTTTAGCATGCACA
452 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
* * *
18790701 AAAAAATTCAGCTAAAAACACGGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCAT
517 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
18790766 TT----CA---T--T-GCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGT
582 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGG-GT
18790821 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA-CTACCCATC
645 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC-ACCCATC
* * *
18790885 GCACAACATGTGCGCACACCCCCCGGCCCCCCCGATCATCGGAA-CCCAATGCCGTCGGTCAGGT
709 GCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * *
18790949 TCTTCGACAATGCTCCGGAGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCTCAAG
773 TC-TCG-C---GAT-----GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * * * * *
18791014 CCTAGCATGTGCTGCTGTAACCCGCGGTCTGGTCCGATC-TAGACTGGCAATGAACTCCGTATGG
828 CCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
18791078 TTAGACTGGGAAAGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * ** * * *
18791143 GGCCAAAAGGGCAGGATGCGCAAGTTGAGGATCGG-CTGGGTCCCCCTCTGCATGCTGTCGATCC
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
18791207 TACTGCCGCAACCCTCGATGT--GG-TCTGATCTTAGACTGGGAATGAACTCCGTATTCCTAAAC
130 TGCTGCCACAACCCT-TA-GTCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * *
18791269 CAATCGACAAAATGAGCG-G-ATGGACGGGCGGGCGGG-AGTACGCCGGCTAGAGAGACGGGATG
192 CAACCGACGAAACGAGCGAGCA-GG-CGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * **
18791331 CGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGTGTGCCAA
255 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* * *
18791396 TGCCATTTTTATTGCTTGTAAATTTATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
320 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
18791461 AAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTT-TGCGTTCGAGATTTTTTAAAA
385 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATG-GTTTGGGATTTTTTAAAA
* * * **
18791524 TTTTTTCGAAAGGATTTTTCGCCCCAAACTTGGTAGACGTGATTCTTCCATTTTTTTTGGCATGC
449 TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
* **
18791589 ACAAAAAAATTCA-CTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTT
514 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
18791653 CATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGT
579 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * *
18791718 TGTGAGTTCTTGAGGTTTGATAAGGGATAGAGAGCCAATATAAGGGCCAAGTACCAGCACCCATC
644 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * * *
18791783 GCACATCATATGCACACACCCCCCGGCTCCTCGATCGTCGGAACCCCATTACCGCCGATCAGGTT
709 GCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
*
18791848 CTCTGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
774 CTC-G-CGA--------TGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * * * *
18791913 CCAGAATATGCTGCCGTAACCTTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGC
829 CCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
18791977 TTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * * * * *
18792042 AGCCAGTGGGGCGTGATGCGTATGCCGGGGATCAGTCGGGTCCACTTCTACGTGCTACCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * * * *
18792107 GCTGCCGCAACCC-TCGATCCAGTTCAATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAA
131 GCTGCCACAACCCTTAG-TCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18792171 CCGAAGAAACGAGCGAGTAGGCGGGCAGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
195 CCGACGAAACGAGCGAGCAGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * ***
18792236 GCCGTAGATCGATAGGGTGGTAGGTGGCTTTAGGCACCTCTTCATATTTTTATGTGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
18792301 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
18792366 GACTCATTTTTTATTTTTCATGATTTTTGAAACTTTTTATGGTTTGAGATTTTTTAAAATTTTTT
390 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTT
* * *
18792431 CAAAAAGG-GTTTTGTCCCCAAACTCGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCACAA
455 C-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAA
* *
18792495 AAAAATTCAGCTAAAAATTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18792560 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* **
18792625 AGTTCTCGAGGTTTGATGAGTGATAGAAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
18792690 ATCATGTGCGCACACCCCCCGGCCCCACCAATCATCGGAACCCTAATGCCGCCGGTTAGGTTCTC
713 ATCATGTGCGCACACCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
*
18792755 -CGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
777 GCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
* * *
18792819 CCACAACCCTCGGTCCGGTCCGATCTTAGAATGGGAATGAACTCCATATGC
842 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
** * *
18792870 TTAGACTGGGAATGAACTCTATATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGTTCAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * *** *
18792935 GGCCAGTGGGGCGCGATGCGTATGCCAGAGATCAACCGGGTCCCCCTCTGCGTGCTACCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * * *
18793000 GCTACCACAACCCTTACTCCAGTTCGATCTTAGACTGTGAATGAACTCCATATGCCTAAGCCAAC
131 GCTGCCACAACCCTTAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
18793065 CGACGAAAC-AACTAGCCAGGCGAGCAGGCGGGCACTACGCCGGCCAGAAAGACAGGATGCGCAT
196 CGACGAAACGAGCGAG-CAGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
18793129 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
18793194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTTTCATGGCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
18793259 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTT
390 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTT
* ** * ** *
18793324 CGGAAGGAGTTTT-GCCCTGATCTTGGTAGTTGTGATCCTTGTATTTTTTTTGGCATGCATAAAA
455 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* *
18793388 AAATTCACCTAAAAACTCGAAGTGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCCCATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
18793453 AGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAG
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* ** * *
18793518 TTCTCAAGGTTAAATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATTGCACAT
650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
18793583 CATGTGTGCACACCCCCCCGACCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
715 CATGTGCGCACA-CCCCCCG--GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-
* * *
18793648 CGGCGATGCTCCGTGATGGTGCCCCGACGAAGAAAAATGTGACACCAGAACATGCCCGAGCCCAG
776 C-GCGA-------TGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
18793713 CATGTGCTATCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGC
833 CATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
18793773 CTAAGCCAAC
Statistics
Matches: 11172, Mismatches: 1603, Indels: 1159
0.80 0.12 0.08
Matches are distributed among these distances:
843 35 0.00
844 1 0.00
846 2 0.00
850 348 0.03
851 109 0.01
853 2 0.00
854 53 0.00
855 6 0.00
856 1 0.00
857 81 0.01
858 21 0.00
859 99 0.01
860 70 0.01
861 377 0.03
862 390 0.03
863 98 0.01
864 151 0.01
865 194 0.02
866 131 0.01
867 158 0.01
868 2 0.00
869 6 0.00
870 141 0.01
871 283 0.03
872 18 0.00
873 164 0.01
874 68 0.01
875 48 0.00
876 106 0.01
877 39 0.00
878 87 0.01
879 139 0.01
880 103 0.01
881 255 0.02
882 150 0.01
883 451 0.04
884 19 0.00
885 160 0.01
886 67 0.01
887 367 0.03
888 247 0.02
889 140 0.01
890 404 0.04
891 431 0.04
892 322 0.03
893 587 0.05
894 380 0.03
895 285 0.03
896 765 0.07
897 260 0.02
898 513 0.05
899 201 0.02
900 224 0.02
901 68 0.01
902 203 0.02
903 301 0.03
904 37 0.00
905 8 0.00
906 3 0.00
908 1 0.00
910 3 0.00
911 5 0.00
912 3 0.00
913 4 0.00
915 5 0.00
916 5 0.00
917 14 0.00
918 2 0.00
919 3 0.00
920 3 0.00
921 10 0.00
922 19 0.00
923 19 0.00
924 9 0.00
925 2 0.00
926 1 0.00
928 8 0.00
929 4 0.00
930 7 0.00
932 1 0.00
933 1 0.00
934 4 0.00
935 12 0.00
936 21 0.00
937 16 0.00
938 7 0.00
939 3 0.00
941 2 0.00
942 17 0.00
943 6 0.00
944 1 0.00
945 1 0.00
946 4 0.00
947 5 0.00
950 1 0.00
952 4 0.00
953 1 0.00
954 2 0.00
955 3 0.00
957 5 0.00
958 3 0.00
959 6 0.00
960 3 0.00
961 2 0.00
962 2 0.00
963 1 0.00
964 1 0.00
965 61 0.01
966 15 0.00
967 5 0.00
968 1 0.00
969 5 0.00
970 6 0.00
971 8 0.00
972 4 0.00
973 7 0.00
975 7 0.00
976 4 0.00
977 38 0.00
978 89 0.01
979 125 0.01
980 87 0.01
981 13 0.00
982 55 0.00
983 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
GCTGCCACAACCCTTAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGAGCAGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTC
GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGCGA
TGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGC
AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
Found at i:18794507 original size:26 final size:26
Alignment explanation
Indices: 18794471--18794522 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
18794461 CTGGTCTGAT
18794471 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18794497 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18794523 TCTAAGTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18797821 original size:897 final size:897
Alignment explanation
Indices: 18796067--18797853 Score: 2733
Period size: 897 Copynumber: 2.0 Consensus size: 897
18796057 CCGGTCCGAT
* * *
18796067 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * *
18796132 CGGCCAAAGGGGCGGGATGCACAAGCCGAGGATCGGTCGGGTCTCCCTCTGCGTGCTACCGATCC
66 CGGCCAAAGGGGCGGGATGCACAAGCCGAGGATCGGCCGGGACCCCCTCTGCGTGCTACCGATCC
* * * *
18796197 TACTGCCACAACCTTTAGTTCGATCCGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAA
131 TACTGCCACAACCCTCAGTCCGATCCAATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAA
* * *
18796262 CCGACAAAATGAGCGGGCGGGTGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGTCGTGGA
196 CCGACAAAACGAGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
18796327 TCGATAGGGTGGTATGTGGGTTTAGGGACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
261 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
*
18796392 GCTTGTAATTTCATACAATGGTCCCTTAAACCTTCACGTAAAGTTTCTTGGCAAGACGACTCGTT
326 GCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACGTAAAGTTTCTTGGCAAGACGACTCGTT
* *
18796457 TTCTATTTTTCATGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTGAAATTTTTTCGGAAGGA
391 TTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * *
18796522 GTTTTGGCCCCACACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
456 GTTTTGACCCCAAACTTGCTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* *
18796587 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTT
521 CTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
18796652 TAATGCCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAATTCTCGAG
586 TAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAATTCTCGAG
*
18796717 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCA
651 GTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCA
* * * **
18796782 CACACCTCCCTCGGCCCACCCGATCACCGGAACCCCAATGCCACCGATCAAGTTCTCCGGTGATG
716 CACACCTCCCTCCGACCACCCGATCACCGGAACCCCAATGCCACCGATCAAGATCTCCGACGATG
*
18796847 CTCCGGCGATGGTGCCCCGGCAAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAACATGTGT
781 CTCCGGCGATGGTGCCCCGGCAAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAACATGTGC
* * *
18796912 TACGGCAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTACATATG
846 TACGGCAACCCTCGGTCCGGTCCGATCTTAGACTGGAAATGAACTACATATG
* *
18796964 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGGAACGAGCGA-GCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-ATGCGGGCGCTCAG
* ** * *
18797028 CCGGCCAGAGGGGCGGGATGTTCAAGCTGGGGATCGGCCGGGACCCCCTCTGCGTGCTACCGATC
65 CCGGCCAAAGGGGCGGGATGCACAAGCCGAGGATCGGCCGGGACCCCCTCTGCGTGCTACCGATC
* * * * ** * *
18797093 CTGCTGCCACAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTTTGCCTAAGCGA
130 CTACTGCCACAACCCTCAGTCCGATCCAATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCA
*
18797158 ACCGACGAAACGAGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
195 ACCGACAAAACGAGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
18797223 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
18797288 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATT-GCAAGACGACTCG
325 GGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACGTAAAGTTTC-TTGGCAAGACGACTCG
* * * *
18797352 TTTTCTATTTTTCACGATTTTTTAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGGAAG
389 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
*
18797417 GAGTTTTGACCCCAAACTTGCTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAATATTC
454 GAGTTTTGACCCCAAACTTGCTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
*
18797482 AGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGACAC
519 AGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * *
18797547 TTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCTTG
584 TTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAATTCTCG
18797612 AGGTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACACATCATG
649 AGGTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG--CACATCATG
* * * ** * * * * *
18797677 TGCGCATACC-CCC-CCGACCGCCCGATCGTCGTAAGCCTAATGCTACCGGTCAAGATCTCCGAC
712 TGCACACACCTCCCTCCGACCACCCGATCACCGGAACCCCAATGCCACCGATCAAGATCTCCGAC
* * * *
18797740 GATGCTCCGGCGATGGTGCCCTGAG-GAAGAAAAATGCT-GCACCAGCACATGCCCGAGCCCAGC
777 GATGCTCCGGCGATGGTGCCCCG-GCAAAGAAAAATG-TGGCACCAGCACATGCCCAAGCCCAAC
**
18797803 ATGTGCTACCGG-AACCCTCGGTTTGGTCCGATCTTAGACTGGAAATGAACT
840 ATGTGCTA-CGGCAACCCTCGGTCCGGTCCGATCTTAGACTGGAAATGAACT
18797854 CCGTATGCCT
Statistics
Matches: 802, Mismatches: 81, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
897 774 0.97
898 11 0.01
899 17 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
CGGCCAAAGGGGCGGGATGCACAAGCCGAGGATCGGCCGGGACCCCCTCTGCGTGCTACCGATCC
TACTGCCACAACCCTCAGTCCGATCCAATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAA
CCGACAAAACGAGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACGTAAAGTTTCTTGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGACCCCAAACTTGCTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAATTCTCGAG
GTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCA
CACACCTCCCTCCGACCACCCGATCACCGGAACCCCAATGCCACCGATCAAGATCTCCGACGATG
CTCCGGCGATGGTGCCCCGGCAAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAACATGTGC
TACGGCAACCCTCGGTCCGGTCCGATCTTAGACTGGAAATGAACTACATATG
Found at i:18798592 original size:26 final size:26
Alignment explanation
Indices: 18798556--18798608 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18798546 TGGTTTCGAT
*
18798556 CTTAGAATGGGAATGAACTCCTTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
18798582 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
18798608 C
1 C
18798609 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:18799493 original size:26 final size:26
Alignment explanation
Indices: 18799457--18799509 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18799447 CCGGTCCAAT
*
18799457 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18799483 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18799509 C
1 C
18799510 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18799646 original size:901 final size:899
Alignment explanation
Indices: 18797806--18801433 Score: 4516
Period size: 901 Copynumber: 4.1 Consensus size: 899
18797796 GCCCAGCATG
* * * * *
18797806 TGCTACCGGAACCCTCGGTTTGG-TCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCA
1 TGCTACCGCAACCCTCGATCTGGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * * *
18797870 ATTGACGAAACGAGCGGGTGGGCGGGCGGACGGGCACTACGCCAGTCAGAGAGACGGGATGCACA
66 ACCGACGAAACGAGCGGGCGGGCGGGCGGA--GGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
18797935 AGCCGTGGATCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
129 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* * *
18798000 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACGTAAAGTTTCTTGGCAAGA
194 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * *
18798065 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTTAAAATTTT
259 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGA-TTTTTTAAAATTTT
* * *
18798130 TTCGGAAGGAGTTTTGGCCACACACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCAAAA
323 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
18798195 AATAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATT
388 AA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18798260 TCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGGG
452 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18798325 GGTTCTCGAGGTTTGATGAGGGATTGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
517 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** * * * *
18798390 ATCATGTGCGCACACCCCCCCGGCCCACATGATTGTCGGAACCCCAATACCGCCGTTCAGGTTC-
582 ATCATGTGCGCACACCCCCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * ** *
18798454 TCTGACGATGCTCTGGCGATGGTGCCTCGTTGAGGAAAAATGCGACACCAGCACATGCCCGAGCC
646 TC-GACGATGCTCCGACGATGGTGCC-CGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCC
** * * * * *
18798519 TGGCATGTGCTG-TCGCAACCCTCGGTCTGGTTTCGATCTTAGAATGGGAATGAACTCCTTATGC
709 CAGCATGTGCTGCT-GCAACCCTCGGTCCGG-TCCGATCTTAGACTGGGAATGAACTTCGTATGC
* *
18798583 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACCAAACGAGCGTGCGGGCGTTCAG-C
772 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC
* ** * * * * *
18798647 CGACCTGAGGGGCTGGATACGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCAATCC
837 GGA-CAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCGAA-AC
** * **
18798712 TGC-AGTTGCAACCCTC-AGTCCGG-TCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGC
1 TGCTA-CCGCAACCCTCGA-TCTGGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * *
18798774 CAACCAACGAAACGAGCGGACGGGCGGGC-GA-GCACTATGCCCGCCATAGAGACGGGATGTGCA
64 CAACCGACGAAACGAGCGGGCGGGCGGGCGGAGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
18798837 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
129 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* *
18798902 ATTTTTATGGCTTGTAAATTCATACGATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGA
194 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** * *
18798967 CGACTCGTTTTTTATTTTTCACAATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
259 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * *
18799032 TCAGAAGGAGTTTTGGCCCCAAACTTGGTGGATGTGATCCTTGTATTTTTATTGCCATGCACAAA
324 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* * *
18799097 ACAATTCAGCTAGAAATTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTT
389 A-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
18799162 CAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGA
453 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * * *
18799227 GTTCTCAAGGTTTGATTAGGGATAGGGGACTAGTATAAGGGCCAAGTACCCA-TACCCATCGCAC
518 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAGCACCCATCGCAC
* * * *
18799291 ATCATCTGCGCACACCTCCACCGGCCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAAGTTC
582 ATCATGTGCGCACACC-CCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * *
18799356 TTCGGCAATGCTCTGACGATGGTGCCCAGACGAAGAAAAATGCGGCACCAGCACATGCTCGCA-C
645 TTCGACGATGCTCCGACGATGGTGCCC-GACGAAGAAAAATGCGACACCAGCACATGCCCG-AGC
* *
18799420 CCAGCATGTGCTGCTGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCT
708 CCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCT
** * *
18799485 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAAAGCACGAAACGAGCATGCAGGCGCTCAGTCG
773 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* * ** * * * *
18799550 GACAAAGGAGCGGGATGCGTAAGTTGGGGATTGGTAGGGTCCCCCTTTGCGTGCTGTCGAAAC
838 GACAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTG-CGAAAC
* * * *
18799613 TGCTACCGTAACCCTCGATCTGGTTC-AATCTTAGACTGGGAATGAACTCCATATGCCTAAGCTA
1 TGCTACCGCAACCCTCGATCTGGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
18799677 ACCGACGAAACGA--------GCGGGC--AGGCACGACGTCGGCCAGAGAGATGGGATGCGCAAG
66 ACCGACGAAACGAGCGGGCGGGCGGGCGGAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * * * * *
18799732 TCATGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCAAACTTCTACGTCCCAATGCCAT
131 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
18799797 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
196 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
18799862 CCTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTT
261 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
** *
18799927 GGAAGGAGTTTACGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
326 GGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* * * *
18799992 CATGCAGCTAAAAACTCGAAGTGTACAAAATTTTGTGACCTTTTGAAAAAACTGTCCCCA-TTCT
391 -ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-
* *
18800056 AAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
18800121 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
18800186 CATGTGCGCCCACCCCCCCGGCCCCTCCGATCGCCTGAACCCTAATGCCACCGATCCGGTTCTTC
584 CATGTGCGCACACCCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTC
** * * *
18800251 GGTGATGCTCCGACGATGGTGCCCTGACAAAGAAATATGCGACACCAGCACATGCTCGAGCCCAG
648 GACGATGCTCCGACGATGGTGCCC-GACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAG
**
18800316 CATGTGCTGC--C-A-CAAC---CC--T-CGATC-----C-------G-A-TTCG-AT-CTTAGA
712 CATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGA
* * *
18800355 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAATCGGTCA
777 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGACA
* * * *
18800420 AAAGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTGCG-ATC
842 AAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCGAAAC
* * * * * * *
18800477 TTGCTGCCGCAACCCTCGGTCT-GATCTGATATTACACTGGGAATTAACTCGGTATGCCTAAGCC
1 -TGCTACCGCAACCCTCGATCTGGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
18800541 AACCGACGAAACGAGCGGGCGGACGGGCGTGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGC
65 AACCGACGAAACGAGCGGGCGGGCGGGCG-G-AGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
18800606 AAGCCGTGGATCGATAGGGTGGTAGGTCGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
128 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
*
18800671 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAG
193 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
18800736 ACGACTCGTTTTCCATTTTTCATGATTTTCAAAACTTTTTACGG-TCGAGATTTTTTGAAATTTT
258 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
*** * *
18800800 TTCGGAAGGCA-TTTTGGCCCCAAACTTGGTAGCCATGATGCTAGTATTTTTTTTGGCATGCACA
323 TTCGGAAGG-AGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCAC-
*
18800864 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAATTG-AAAAAGATGTCCCCA
386 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG-TGTCCCCA
* * *
18800928 TTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCCTTAAGGGGATG
450 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
18800993 TGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAACTACCAGCACCCATCGA
515 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * *
18801058 ACATGATGTGCGCACA-CCCCCCGACCCCTCGATCGCCGGAACCCCAATGTCGTCGGTTAGGTTC
580 ACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* * *** * *
18801122 TCCGATGATGCTCCGGTAATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
645 TTCGACGATGCTCCGACGATGGTG-CCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCC
** * *
18801187 CAGCATG-GACTGCTGCAACCCTCGGTTTGATCCGATCTTAGA-TTGGAATGAACTTCGTATGCT
709 CAGCATGTG-CTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCT
* * * * *
18801250 TAGATTGGGAAAGAACTTCGTATGCCTAAGTCAACCCAC-AGAACGAGTGTGCGGGCGCTCAGCC
773 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAGTC
* * * * * *
18801314 GGCCAAAGGGGTGGGATGCTCAAGCTGGGGATC-AGCTGGGTCCCCCTCTGCGTGCTGCTG-ATC
837 GGACAAAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGC-GAAAC
* * * * *
18801377 TTGCTACTGCAACACTAGGTCTGG-TCTGATCTTAGACTGGGAATGAACTCCATATGC
1 -TGCTACCGCAACCCTCGATCTGGTTCTGATCTTAGACTGGGAATGAACTCCGTATGC
18801434 TTAGACTGGG
Statistics
Matches: 2348, Mismatches: 304, Indels: 146
0.84 0.11 0.05
Matches are distributed among these distances:
864 5 0.00
865 64 0.03
866 105 0.04
867 2 0.00
868 4 0.00
869 1 0.00
870 1 0.00
873 6 0.00
874 89 0.04
875 19 0.01
876 250 0.11
877 203 0.09
878 2 0.00
882 4 0.00
883 2 0.00
884 5 0.00
885 2 0.00
888 2 0.00
889 1 0.00
891 1 0.00
892 113 0.05
893 450 0.19
895 1 0.00
896 1 0.00
897 4 0.00
898 5 0.00
899 105 0.04
900 50 0.02
901 451 0.19
902 320 0.14
903 4 0.00
905 3 0.00
906 73 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
TGCTACCGCAACCCTCGATCTGGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAACGAGCGGGCGGGCGGGCGGAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
GGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGAC
GATGCTCCGACGATGGTGCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATG
TGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGACAAAGG
GGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCGAAAC
Found at i:18801008 original size:876 final size:872
Alignment explanation
Indices: 18797806--18801433 Score: 4053
Period size: 893 Copynumber: 4.1 Consensus size: 872
18797796 GCCCAGCATG
* * * * *
18797806 TGCTACCGGAACCCTCGGTTTGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * * * *
18797871 TTGACGAAACGAGCGGGTGGGCGGGCGGACGGGCACTACGCCAGTCAGAGAGACGGGATGCACAA
66 CCGACGAAACGAGC-GG-CGGCGGGCGG-CAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* *
18797936 GCCGTGGATCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
128 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* * **
18798001 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACGTAAAGTTTCTTGGCAAGAC
193 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGAC
* ** * *
18798066 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTTAAAATTTTT
258 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGG-TCGAGA-TTTTTTAAAATTTTT
* * *
18798131 TCGGAAGGAGTTTTGGCCACACACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCA-AAA
321 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTATTGGCATGCACAAA
* *
18798195 AATAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATT
386 AA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATT
* *
18798260 TCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGGG
450 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18798325 GGTTCTCGAGGTTTGATGAGGGATTGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
515 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
18798390 ATCATGTGCGCACACCCCCCCGGCCCACAT--GATTGTCGGAACCCCAATACCGCCGTTCAGGTT
580 ATCATGTGCGCACACCCCCCCGGCCC-C-TCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTT
** * * ** * * *
18798453 C-TCTGACGATGCTCTGGCGATGGTGCCTC-GTTGAGGAAAAATGCGACACCAGCACATGCCCGA
643 CTTC-GGTGATGCTCCGACGATGGTGCC-CAGACGAAGAAAAATGCGGCACCAGCACATGCTCGA
** * *
18798516 GCCTGGCATGTGCTG-TCGCAACCCTCGGTCTGGTTTCGATCTTAGAATGGGAATGAACTCCTTA
706 GCCCAGCATGTGCTGCT-GCAA--C-C---C-----TCGATC--------CG-AT----T-C-GA
* *
18798580 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACCAAACGAGCGTGCGGGCGTTCA
744 T-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
18798645 G-CCGACCTGAGGGGCTGGATACGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCAA
808 GTCGGA-C-AAAGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGA
18798709 TCC
871 T-C
* ** * * **
18798712 TGCAGTTGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
18798777 CCAACGAAACGAGCGGACGGGCGGGC-G-A-GCACTATGCCCGCCATAGAGACGGGATGTGCAAG
66 CCGACGAAACGAGCGG-C-GGCGGGCGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
18798839 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
129 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* *
18798904 TTTTATGGCTTGTAAATTCATACGATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACG
194 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACG
* * ** * *
18798969 ACTCGTTTTTTATTTTTCACAATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTC
259 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGG-TCGAGATTTTTTAAAATTTTTTC
* * * *
18799034 AGAAGGAGTTTTGGCCCCAAACTTGGTGGATGTGATCCTTGTATTTTTATTGCCATGCACAAAAC
323 GGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTATTGGCATGCACAAAAA
* * * *
18799099 AATTCAGCTAGAAATTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCA
388 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCA
* *
18799164 GACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGT
453 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * * * *
18799229 TCTCAAGGTTTGATTAGGGATAGGGGACTAGTATAAGGGCCAAGTACCCA-TACCCATCGCACAT
518 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAGCACCCATCGCACAT
* * * *
18799293 CATCTGCGCACACCTCCACCGGCCCC-CCTGATCGTCGGAACCCCAATGCCGCCGGTCAAGTTCT
582 CATGTGCGCACACC-CCCCCGGCCCCTCC-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
** *
18799357 TCGGCAATGCTCTGACGATGGTGCCCAGACGAAGAAAAATGCGGCACCAGCACATGCTCGCA-CC
645 TCGGTGATGCTCCGACGATGGTGCCCAGACGAAGAAAAATGCGGCACCAGCACATGCTCG-AGCC
*
18799421 CAGCATGTGCTGCTGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTT
709 CAGCATGTGCTGCTGCAA-CC-C--T-C-G----ATC-----C-------G-A-TTCG-AT-CTT
** * *
18799486 AGACTGGGAATGAACTCCGTATGCCTAAGTCAAAGCACGAAACGAGCATGCAGGCGCTCAGTCGG
748 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGG
* ** * * * * * *
18799551 ACAAAGGAGCGGGATGCGTAAGTTGGGGATTGGTAGGGTCCCCCTTTGCGTGCTGTCGAAAC
813 ACAAAGG-GCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCG-ATC
* * * * * *
18799613 TGCTACCGTAACCCTCGATCTGGT-TCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCTA
1 TGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
18799677 ACCGACGAAACGA------GC--G-GGCAGGCACGACGTCGGCCAGAGAGATGGGATGCGCAAGT
65 ACCGACGAAACGAGCGGCGGCGGGCGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * * * * *
18799733 CATGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCAAACTTCTACGTCCCAATGCCATT
130 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* *
18799798 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGC
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGA
* *
18799863 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTTG
260 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACG-GTCGAGATTTTTTAAAATTTTTTCG
** * *
18799928 GAAGGAGTTTACGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAC
324 GAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTATTGGCATGCACAAAAAA
* * *
18799993 ATGCAGCTAAAAACTCGAAGTGTACAAAATTTTGTGACCTTTTGAAAAAACTGTCCCCA-TTCTA
389 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTC-A
* *
18800057 AACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
453 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
18800122 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCACATC
518 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * *
18800187 ATGTGCGCCCACCCCCCCGGCCCCTCCGATCGCCTGAACCCTAATGCCACCGATCCGGTTCTTCG
583 ATGTGCGCACACCCCCCCGGCCCCTCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCG
* * * *
18800252 GTGATGCTCCGACGATGGTGCCCTGACAAAGAAATATGCGACACCAGCACATGCTCGAGCCCAGC
648 GTGATGCTCCGACGATGGTGCCCAGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGC
**
18800317 ATGTGCTGCCACAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
713 ATGTGCTGCTGCAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * *
18800382 CAACCCATGAAACGAGCGTGCGGGCGCTCAATCGGTCAAAAGGGCGGGATGCGCAAGCCGGGGAT
778 CAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGAC-AAAGGGCGGGATGCGCAAGCCGGGGAT
* *
18800447 CGACCGGGTCCCCCTCTGCATGCTG-CGATC
842 CGATCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * *
18800477 TTGCTGCCGCAACCCTCGGTCTGATCTGATATTACACTGGGAATTAACTCGGTATGCCTAAGCCA
1 -TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
18800542 ACCGACGAAACGAGCGGGCGGACGGGCGTGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
65 ACCGACGAAACGAGC-GGCGG-CGGGCG-GCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
*
18800607 AGCCGTGGATCGATAGGGTGGTAGGTCGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
127 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
18800672 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGA
192 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGA
* * *
18800737 CGACTCGTTTTCCATTTTTCATGATTTTCAAAACTTTTTACGGTCGAGATTTTTTGAAATTTTTT
257 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTCGAGATTTTTTAAAATTTTTT
*** * * *
18800802 CGGAAGGCA-TTTTGGCCCCAAACTTGGTAGCCATGATGCTAGTATTTTTTTTGGCATGCACAAA
322 CGGAAGG-AGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTATTGGCATGCACAAA
*
18800866 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAATTGAAAAAGA-TGTCCCCATT
386 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA-ACTGTCCCCATT
* * *
18800930 TCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCCTTAAGGGGATGTG
450 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
18800995 AGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAACTACCAGCACCCATCGAAC
515 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
18801060 ATGATGTGCGCACA-CCCCCCGACCCCT-CGATCGCCGGAACCCCAATGTCGTCGGTTAGGTTCT
580 ATCATGTGCGCACACCCCCCCGGCCCCTCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * *** * * *
18801123 CCGATGATGCTCCGGTAATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
645 TCGGTGATGCTCCGACGATGGTGCCCAGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCC
18801188 AGCATG-GACTGCTGCAACCCTCGGTTTGATCCGATCTTAGATTGGAATGAACTTCGTATGCTTA
710 AGCATGTG-CTGCTGCAACCCTC-----GAT-C---C------------G-A-TTCG-AT-CTTA
* * * * *
18801252 GATTGGGAAAGAACTTCGTATGCCTAAGTCAACCCAC-AGAACGAGTGTGCGGGCGCTCAGCCGG
749 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAGTCGG
* * * * * *
18801316 CCAAAGGGGTGGGATGCTCAAGCTGGGGATC-AGCTGGGTCCCCCTCTGCGTGCTGCTGATC
813 ACAAA-GGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCCGATC
* * * * *
18801377 TTGCTACTGCAACACTAGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGC
1 -TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
18801434 TTAGACTGGG
Statistics
Matches: 2329, Mismatches: 307, Indels: 178
0.83 0.11 0.06
Matches are distributed among these distances:
864 2 0.00
865 66 0.03
866 102 0.04
867 7 0.00
868 4 0.00
869 1 0.00
870 1 0.00
872 1 0.00
873 2 0.00
874 100 0.04
875 13 0.01
876 260 0.11
877 200 0.09
879 3 0.00
880 1 0.00
882 3 0.00
883 1 0.00
886 1 0.00
887 1 0.00
888 1 0.00
890 1 0.00
891 5 0.00
892 114 0.05
893 445 0.19
895 2 0.00
896 2 0.00
897 5 0.00
898 11 0.00
899 101 0.04
900 56 0.02
901 427 0.18
902 308 0.13
903 4 0.00
905 6 0.00
906 72 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (872 bp):
TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGCGGCGGGCGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTCGAGATTTTTTAAAATTTTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCCGGCCCCTCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGTG
ATGCTCCGACGATGGTGCCCAGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATG
TGCTGCTGCAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGTCGGACAAAGGGCGGGATGCGCAAGCCGGGGATCGAT
CGGGTCCCCCTCTGCGTGCTGCCGATC
Found at i:18801257 original size:25 final size:26
Alignment explanation
Indices: 18801223--18801274 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18801213 TTGATCCGAT
*
18801223 CTTAGATT-GGAATGAACTTCGTATG
1 CTTAGATTGGGAAAGAACTTCGTATG
18801248 CTTAGATTGGGAAAGAACTTCGTATG
1 CTTAGATTGGGAAAGAACTTCGTATG
18801274 C
1 C
18801275 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGATTGGGAAAGAACTTCGTATG
Found at i:18801443 original size:26 final size:26
Alignment explanation
Indices: 18801407--18801462 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
18801397 CTGGTCTGAT
18801407 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18801433 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18801459 CTTA
1 CTTA
18801463 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18801548 original size:185 final size:185
Alignment explanation
Indices: 18801217--18801618 Score: 463
Period size: 185 Copynumber: 2.2 Consensus size: 185
18801207 CTCGGTTTGA
* * * *
18801217 TCCGATCTTAGA-TTGGAATGAACTTCGTATGCTTAGATTGGGAAAGAACTTCGTATGCCTAAGT
1 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAACTCCGTATGCCTAAGT
* * * * * **
18801281 CAACCCACAGAACGAGTGTGCGGGCGCTCAGCCGGCCAAAGGGGTGGGATGCTCAAGCTGGGGAT
66 CAACCCACAGAACGAGCGTACGGACGCTCAGCCGGCCAAAGGGGCGGGATGCTCAAGCCGAAGAT
* ** ** * * *
18801346 CAGCTGGGTCCCCCTCTGCGTGCTGCTGATCTTGCTACTGCAACAC-TAGGTCTGG
131 CAGCTGGGTCCCCCTCTGCATGCTGCCAATCCAGCTACTACAAC-CTTAGATCCGG
* * * *
18801401 TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGT
1 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAACTCCGTATGCCTAAGT
* * *
18801466 CAACCCA-TGAAACGAGCGTACGGACGCTCAGTCGGCCAGAGGGGCGGGATGCGT-AAGCCGAAG
66 CAACCCACAG-AACGAGCGTACGGACGCTCAGCCGGCCAAAGGGGCGGGATGC-TCAAGCCGAAG
* * * *
18801529 ATC-GATCGGGTCTCCCTCTGCATGCTGCCAATCCAGCTGCTACAACCTTCGATCCGG
129 ATCAGCT-GGGTCCCCCTCTGCATGCTGCCAATCCAGCTACTACAACCTTAGATCCGG
18801586 TCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 TCCGATCTTAGACTGGGAATGAACTCCGTATGC
18801619 CTAAGCCAAC
Statistics
Matches: 181, Mismatches: 32, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
184 15 0.08
185 165 0.91
186 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (185 bp):
TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAACTCCGTATGCCTAAGT
CAACCCACAGAACGAGCGTACGGACGCTCAGCCGGCCAAAGGGGCGGGATGCTCAAGCCGAAGAT
CAGCTGGGTCCCCCTCTGCATGCTGCCAATCCAGCTACTACAACCTTAGATCCGG
Found at i:18801784 original size:171 final size:171
Alignment explanation
Indices: 18801496--18801813 Score: 442
Period size: 171 Copynumber: 1.9 Consensus size: 171
18801486 CGGACGCTCA
* * *
18801496 GTCGGCCAGAGGGGCGGGATGCGTAAGCCGAAGATCGATCGGGTCTCCCTCTGCATGCTGCCAAT
1 GTCGGCCAGAGGGGCGGGATACGCAAGCCGAAGATCGATCGGGTCCCCCTCTGCATGCTGCCAAT
*
18801561 CCAGCTGCTACAACCTTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
66 CCAGCTGCTACAACCTTCGATCCGGTCCGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCC
*
18801626 AACCGACGAAACGAGCGAGCAGACAGGCGGGCGGGCACTAC
131 AACCGACAAAACGAGCGAGCAGACAGGCGGGCGGGCACTAC
* ** * **
18801667 GTCGGCCAGAGGGGCGGGATACGCAAGTCGGGGATTTG-TCGGGTCCCCCTCTGTGTGCTGCCAA
1 GTCGGCCAGAGGGGCGGGATACGCAAGCCGAAGA-TCGATCGGGTCCCCCTCTGCATGCTGCCAA
* * * ** *
18801731 TCCTGCTGCTGCAACCATT-GGTTTGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAG
65 TCCAGCTGCTACAACC-TTCGATCCGGTCCGATCTTAGACTGGGAATAAACTCCGTATGCCTAAG
*
18801795 CCAATCGACAAAACGAGCG
129 CCAACCGACAAAACGAGCG
18801814 GACGGGCGGG
Statistics
Matches: 127, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
171 123 0.97
172 4 0.03
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.19
Consensus pattern (171 bp):
GTCGGCCAGAGGGGCGGGATACGCAAGCCGAAGATCGATCGGGTCCCCCTCTGCATGCTGCCAAT
CCAGCTGCTACAACCTTCGATCCGGTCCGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCC
AACCGACAAAACGAGCGAGCAGACAGGCGGGCGGGCACTAC
Found at i:18802496 original size:26 final size:26
Alignment explanation
Indices: 18802460--18802512 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18802450 CCGATCCGAT
18802460 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18802486 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18802512 C
1 C
18802513 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18804278 original size:26 final size:26
Alignment explanation
Indices: 18804242--18804294 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18804232 CCGATTTGAT
*
18804242 CTTAGACTGGGAATGCACTTCGTATG
1 CTTAGACTGGGAATGCACTCCGTATG
18804268 CTTAGACTGGGAATGCACTCCGTATG
1 CTTAGACTGGGAATGCACTCCGTATG
18804294 C
1 C
18804295 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGCACTCCGTATG
Found at i:18805177 original size:26 final size:26
Alignment explanation
Indices: 18805141--18805193 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18805131 CTGGTCTGAT
18805141 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18805167 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18805193 C
1 C
18805194 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18806058 original size:26 final size:26
Alignment explanation
Indices: 18806029--18806081 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18806019 CTGGTCCGAT
*
18806029 CTTAGATTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
* *
18806055 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
18806081 C
1 C
18806082 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:18806956 original size:26 final size:26
Alignment explanation
Indices: 18806920--18806972 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18806910 CTGTTCTGAT
*
18806920 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18806946 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18806972 C
1 C
18806973 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18807304 original size:891 final size:889
Alignment explanation
Indices: 18801669--18807556 Score: 7758
Period size: 891 Copynumber: 6.6 Consensus size: 889
18801659 GGCACTACGT
* * * ** * *
18801669 CGGCCAGAGGGGCGGGATACGCAAGTCGGGGATTTGTCGGGTCCCCCTCTGTGTGCTGCCAATCC
1 CGGCCAGAGGGGCGGGATGCGAAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * ** *
18801734 TGCTGCTGCAACCATTGGTTTGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAA
66 TGCTGCCGTAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** *
18801799 TCGAC--AA-AA-CGAGCGGACGGGCGGGCACTACGCCAACCAGAGAGACAGGATGCGCAAGCCG
131 CCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * * *
18801860 TGGATCGATAGCGCGGTAGGTGGGTTTAGGCACATCTTTATATTTTTGCATGCCAATGCCATTTT
196 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* *
18801925 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGTCAAGACGACT
261 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * * * *
18801990 CGTTTTCTATTTTTAATGATTTTTGAAACTTTTTGCAGTTTGGGATTTTTTAAAATTGTTTCGGA
326 CGTTTTCTATTTTTCACGATTTTTCAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* *
18802055 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
391 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACAT
*
18802120 TCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCTAGA
456 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGA
*
18802184 CACTTTAATGGGTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
520 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
18802249 TCGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
585 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
18802314 GTGCGCACACCCGCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCG-
650 GTGCGCACACCCCCCCAG-CCCCCCGATCGCCGGAACCCCAATGCCGTCAGGTCAGGTTCTCCGA
* * * *
18802377 -G-TGATGCTCTGGCGAAGAAAAATACGGCACTAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
714 CGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * * * * *
18802440 AACCCTTGGCCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
779 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * *
18802505 CCGTATGCCTAAGTCAACCCACAAAACGAGCTTGCGGGCGCTCAAC
844 CCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGC
* * * *
18802551 CGGCCAGAGGGGCGAGATGC-ACAAGCCGGGGATCGG-CTGGGTCCTCCTATGCGTGTTGCCGAT
1 CGGCCAGAGGGGCGGGATGCGA-AAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGAT
* * * *
18802614 CCTG-TAGCCGTAA-ACTTCAATTCGGTCTGATCTTAGACTGCGAATGAACTCCGTATGCCTAAG
64 CCTGCT-GCCGTAACCCTT-GATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * ** * * *
18802677 CCAACTGACGAAACGAGCAAGCGGGCGGGCGGGCACTACGCTGACCAAAGAGACGGGATGCGCAA
127 CCAACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
18802742 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
192 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
18802807 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
257 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
18802872 GACTCGTTTTCTATTTTTCA-TAATTTTCGAAACTTTTTACGGTTTGGAATTTTTTAAAATTTTT
322 GACTCGTTTTCTATTTTTCACGATTTTTC-AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * * *
18802936 TTGGAAGGATTTTTAGCCCCAAACTCGGTAGACGGGATCCTTGTATTTTTGTTGGCAAGCACAAA
386 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
18803001 ATA-ATTCAGCTAAAACCTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
451 A-ACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18803065 TCAGACACTTTAATGGCTACTGGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTG
515 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18803130 AGTTCTCGAGGTTTGATGAAGGATAGGAGGCCAATATAAGGGCCAAG-AGCCAGCACCCATCGCA
580 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAGCACCCATCGCA
* *
18803194 CATCATGTGCGCACACCCCCCCGGCCCCCCTGATCGCCGGAACCCCAATGCCGCCA-GTCAGGTT
644 CATCATGTGCGCACACCCCCCCAGCCCCCC-GATCGCCGGAACCCCAATGCCGTCAGGTCAGGTT
* * * *
18803258 CTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCATC-GACACATGCCCGAGCCCAGCATGTA
708 CTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAG-CACATGCCCGAGCCCAGCATGTG
* * ** *
18803322 CTGCTGTAACCCTCGGTCCAG-CTCGATCTTAGACTGGGAATGAACTCCGTATGCTTGGACTGGG
772 CTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * *
18803386 AATGAACTACGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTC-GC
836 AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGC
* * * * *
18803439 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGAGTCCCTCTCTGCGTGCTGTCGATCC
1 CGGCCAGAGGGGCGGGATGCGAAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
18803504 TGCTACCGTGACCC-TCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
66 TGCTGCCGTAACCCTTGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
18803568 ACTGACGAAATGAA-----CGGACAGGCAGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGC
130 ACCGACGAAA-CAAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
*
18803628 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAGT
194 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
** *
18803693 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGATGA
259 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
18803758 CTCGTTTTCTATTTTTCACGA-TCTTCAAAATTTTTACGGTTTGGGATTTTTCAAAATTTTGTCG
324 CTCGTTTTCTATTTTTCACGATTTTTCAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
18803822 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAC
389 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAC
* * *
18803887 ATTCAGCTGAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
454 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * *
18803952 ACACTTTAATGGCTACTGGTAGTAAACCTGTAAAATCTCAAATGCTCTTGAAGGAGGTGTGAGTT
519 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
18804017 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCA
584 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *** * *
18804082 TTTGTGCACA-CCTTTCGGCCCCCCCGATCGCCGAAACCCCAATGCCATCGATCAGGTTCTCCAA
649 TGTGCGCACACCCCCCCAG-CCCCCCGATCGCCGGAACCCCAATG-C--CG-TCAGG---T-C-A
* * * *
18804146 TGATGCTCCGACGATGGTGCCCCGTCGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCA
704 -GGTTCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
** ** * * * * *
18804211 TGTGCTATCGCAACCCTCTATCCGATTTGATCTTAGACTGGGAATGCACTTCGTATGCTTAGACT
768 TGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
18804276 GGGAATGCACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC-AGGCGCTCAAC
833 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGA-GCGCTCAGC
* ** * *
18804333 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGAT-GGTTAGGTCTCCCTCTACGTGCTGCCGATCC
1 CGGCCAGAGGGGCGGGATGCGAAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * ** *
18804397 TTCTGCAGCAACCCTCGGTCCGATCCAATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
66 TGCTGCCGTAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * ** ** *
18804462 -TGACGAAACGAGTGGGCGGGCAGGCGGGCAGTACGCCGGCTGGAGAGGTGGGATGTGCAAGCCG
131 CCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
** * *
18804526 TGGATCGATAGGGTGGTAAATGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCATTTT
196 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* * **
18804591 TATGACTTGTAAATTCATACAATGGTCTCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACT
261 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** * *
18804656 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTTTTAAAAATTTTTTCAGA
326 CGTTTTCTATTTTTCACGATTTTTCAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * ** *
18804721 AGGAGTTTTGGCTCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGTGCAAAAAAAT
391 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACAT
* * *
18804786 TCAGCTAACAACTCAAAGTGTACAAGATGTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
456 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
18804851 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCT
521 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
18804916 CGAGGTTTGATGAGGGATAAGGGGCCAATATAGGGGCCAAGCACCAGCACCCATCGCACATCATG
586 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
18804981 TGCGCACACCCCCCTCAGCCAGCCCGATTGTCGGAACCCCAATACCGCCAGTCAGGTTCCCCGGT
651 TGCGCACACCCCCC-CAGCC-CCCCGATCGCCGGAACCCCAAT---GCC-GTCAGG-T--CAGGT
* * * * *
18805046 GATGCTCCGATGATGGTGCCTCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCGT
707 --T-CTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* *
18805111 GTGCTGCTGCAACCCGCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
769 GTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * **
18805176 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGGGCTCATA
834 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGC
* *
18805232 CGGCCAGAGGGGCGGGATGC-ATAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATC
1 CGGCCAGAGGGGCGGGATGCGA-AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * ** * *
18805296 CTACTGTCGTAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCTA
65 CTGCTGCCGTAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * ** *
18805361 ACCGACGAAACGAGCGGGCGAGCGGGTGGGTAGTACGCCACCCAGAGAGGCGGGATGCGCAAGCC
130 ACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * **
18805426 GTAGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCGTCATATTTCTGTATGCCAATGCCATTT
195 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
* * *
18805491 TTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCATTGCAAGACGAC
260 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
18805556 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGA-TGTTCGGGATTTTTTAAAATTTTTTGG
325 TCGTTTTCTATTTTTCACGATTTTTCAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * *
18805620 GAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTAATTTTGTTGGCTTGCACAAAAAC
389 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAC
* * *
18805685 ATTCAACTAAAAAATCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
454 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
18805750 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
519 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
18805815 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
584 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
18805880 TGTGCGCACACCCCCCACAGCCCCCCGATCGCCGGAACCCCAATGCCG-CTA-GTCAGGTTCTCC
649 TGTGCGCACACCCCCC-CAGCCCCCCGATCGCCGGAACCCCAATGCCGTC-AGGTCAGGTTCTCC
* * * * * *
18805943 GGC-ATGGTGCCCCGGTGAAGAAAAATGCGACGCCAGCACATGCCCGAGCCCAGCATGTGCTACC
712 GACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * * *
18806007 GTAACCCTCAGTCTGGTCCGATCTTAGATTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAA
777 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* *
18806072 CTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC-AGACACTCAGC
842 CTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAG-CGCTCAGC
* * * ** * *
18806120 CGGCTAGAGGGGCGGGATGCGTAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCT
1 CGGCCAGAGGGGCGGGATGCGAAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** * *
18806185 TGCTACCGCAACCC-TCAGTCCAATCTGACCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
66 TGCTGCCGTAACCCTTGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
18806249 ACCGACGAAACCAGTAGGTGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCA
130 ACCGACGAAA-CA--A-GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* ** * *
18806314 AGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTATGTACGAATGCC
191 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* *
18806379 ATTTTTATGGCTTGGAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
256 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
18806444 CAACTCGTTTTTTATTTTTCACGATTTTTCAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
321 CGACTCGTTTTCTATTTTTCACGATTTTTCAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * *
18806509 TCAGAAGGAGTTTTGGGCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCTCAAA
386 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
18806574 AACATTCAGGTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCGCCATTT
451 AACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
18806639 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAGGGGGTGTGA
516 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
18806704 GTTCTCGAGTTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGTACA
581 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
18806769 TCATGTGCGCACA-CCCCCTAGCCCCCCGATCGTCGAAACCCTAATGCCGTC-GGTCAGGTTCTC
646 TCATGTGCGCACACCCCCCCAGCCCCCCGATCGCCGGAACCCCAATGCCGTCAGGTCAGGTTCTC
* * *
18806832 CGACGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCATATGCCCGAGCCCAGCATGTGCTGC
711 CGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* *
18806897 CGCAACCCTCGGTCTGTTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGA
776 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * *
18806962 ACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCATACGAACCCTCAGC
841 ACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGC
* * ** * *
18807011 CAGCCAGAGGGGCGAGATTG-GAAAGCTAGAGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATC
1 CGGCCAGAGGGGCGGGA-TGCGAAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
18807075 CTACTGCCGTAACCCTTGATCCGGTCAGATCTTAGACT-AGAATTGAACTTCGTATGCCTAAGCC
65 CTGCTGCCGTAACCCTTGATCCGGTCTGATCTTAGACTGGGAA-TGAACTCCGTATGCCTAAGCC
* *
18807139 AACCGACGAAACAAGCGGGCGGGCGGGCGAGCGGGCACTACACCGGCCAGAGAGACGGGATTCGC
129 AACCGACGAAACAAGCGGGCGGGC--G-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* *
18807204 AAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
190 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* *
18807269 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAC
255 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * ** * *
18807334 ACGACCCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGGGGTTCGGGATTTTTTCATATTTT
320 ACGACTCGTTTTCTATTTTTCACGATTTTTCAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * *
18807399 TTCAGAAGGAGTTTTGGCCCAAAACTTGGTACACGAGATCCTTGTATTTTTGTTGGCATGCACAA
385 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
18807464 AAA-ATTTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCAT
450 AAACA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
18807528 TTCAGACACTTTAATGGCTACTGGCAGCA
514 TTCAGACACTTTAATGGCTACTGGCAGCA
18807557 CCCATCGCAC
Statistics
Matches: 4394, Mismatches: 524, Indels: 167
0.86 0.10 0.03
Matches are distributed among these distances:
881 4 0.00
882 129 0.03
883 287 0.07
884 189 0.04
885 16 0.00
886 512 0.12
887 17 0.00
888 383 0.09
889 156 0.04
890 50 0.01
891 623 0.14
892 485 0.11
893 225 0.05
894 36 0.01
895 2 0.00
896 184 0.04
897 290 0.07
898 6 0.00
899 212 0.05
900 100 0.02
901 486 0.11
902 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
CGGCCAGAGGGGCGGGATGCGAAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCGTAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTTCAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCCAGCCCCCCGATCGCCGGAACCCCAATGCCGTCAGGTCAGGTTCTCCGACG
ATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
CCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
GTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGC
Found at i:18809495 original size:17 final size:17
Alignment explanation
Indices: 18809455--18809495 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
18809445 AAATGCGGCA
*
18809455 CCAGCACATGCCCGAGC
1 CCAGCATATGCCCGAGC
*
18809472 CCAGCATATGCCTGAGC
1 CCAGCATATGCCCGAGC
18809489 CCAGCAT
1 CCAGCAT
18809496 GTGCTGGCGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.24, C:0.41, G:0.22, T:0.12
Consensus pattern (17 bp):
CCAGCATATGCCCGAGC
Found at i:18810454 original size:26 final size:26
Alignment explanation
Indices: 18810418--18810468 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18810408 CTGGACCGAT
18810418 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
18810444 CTTAGATTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTACGTAT
18810469 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:18819371 original size:878 final size:871
Alignment explanation
Indices: 18816221--18821271 Score: 6049
Period size: 878 Copynumber: 5.7 Consensus size: 871
18816211 CATGACACCA
* * * ***
18816221 GGGATCGATCAGTTCCCCCTCTGCGTGCTGTCGATCCTACTACTGTAACCCT-AGGTCC-GATCT
1 GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCACAACCCTCA-GTCCAG-TCT
* * *
18816284 AATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGAA-CGGGCGGGCGAG
64 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA-CAAGCGGGCGGG-G-G
* ** * *
18816348 CGGGCGGGCACTATGCCGGCCAGAGAGATAGGATGCGCAAGCCATGGATCGATAGGGTGGCAGGT
126 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * ***
18816413 GAGTTTAGGCATATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
191 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
18816478 ACGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGACGACTCGCTTTCTATTTTTCATGATT
256 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * * *
18816543 TTTGAAACTTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGTCCCAAACT
321 TTGGAAACTTTTTT-CGATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCCAAACT
* * *
18816608 TGGTAGATGTGATCCTTGTATTTTTGTAGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTG
384 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
18816673 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
449 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
18816738 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTTGAGGTTTGATGAGGGATAG
514 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
18816803 GGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCT
579 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-
* * * *
18816868 CCCGATCG-CTGGAACCCCAATGCGGCCGATCAGGTTCTCCGACGATGCTCCAACGATGGTGCCT
643 CCCGATCGTC-GAAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
** * * *
18816932 CGGTGAAGAAAAATACGGCACCAGCACATGCCCTAGCCCAGCATGTGCTGCCGCAACCTTCGGTA
707 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-
** * *
18816997 T-GGTAAGATCTTAGACTGGGAATGAACTCCGTATGCCGAAGTCAACCCACG-----AGCGTGCG
771 TCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAATAAGCGTGCG
* * * * * *
18817056 GGCACTCAACCGACCAAAAGGGATG-GGGTGTGTAAGCCG
836 GGCGCTCAACCGGCC-AGAGGG--GCGGATGCGCAAG-CG
* * * * * *
18817095 GGGATCAATCGGGTCCCCCTCTGCGTGTTGCCGATCCTGCTACCACAACCCT-TGATTCAGTCTC
1 GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCACAACCCTCAG-TCCAGTCTA
* * * * * * * *
18817159 ATCTTAGATTGGGAATGAACACCATATGCTTAAGCCATCCAAAGAAACGAGCGGGCAGGCGGACG
65 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGC--G--GGCGG--G
* * * * * *
18817224 GGCGGGTGGGCGCTACACCGGCCAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTAT
124 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
18817289 GTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTCTAAATTCATA
189 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
18817354 CAATGGTCCCTTAAGCCTTCACGGGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGA
254 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
** * *
18817419 TTTTATAAAGTTTTTACGATTCGAGATTTTTT-AAATTTTTTCGGAAGGAGTTTTGG------C-
319 TTTTGGAAACTTTTTTCGATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAACT
* * * *
18817476 TGGTAGACGTGATCCCTATATTTTTGTTGGCATGCACAAAAAAAGTCAGGTAAAAACTCGAAGTG
384 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * *
18817541 TACAAGATTTTGTGACCATTTGAACAAAGTGTGCCCATTCCAGACACTTTAATGGCTACTGACAG
449 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
18817606 CAAACCTGTAAAATCTCGAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
514 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
18817671 GGGGCCAATATAAGGGCCAAGTACTAGCACCCATTGCACATCATGTGCGCACACCCCTCTGGCCC
579 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCC
* *
18817736 CCCTGATCGTC-AGAACCCCAATGCCGCCGGTCAGG-T-T-------T--TCCGACGATGGTACC
643 CCC-GATCGTCGA-AACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
** * * * *
18817789 CCGACGAAGAAAAATTTGGCACCAACAAATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGG-
706 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * *
18817853 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGATATGAGCGTGC
771 TC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAATAAGCGTGC
* * *
18817918 GGGTGCTCAACCGGCTAGAGGGGTGGGATGCGCAAGCG
835 GGGCGCTCAACCGGCCAGAGGGG-CGGATGCGCAAGCG
* * * *
18817956 GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTTAGTCCAGTCTGA
1 GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCACAACCCTCAGTCCAGTCTAA
* * ** *
18818021 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGCTAACCGACAAAACAAGCGGGCGGACGGGTGG
66 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGG--GGGCGG
* *
18818086 GCGGGCACTACGTCAG-C-GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
129 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
18818149 TTTAGGCACATCTTCATGTTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
194 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
18818214 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGATTTTT
259 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTT
* * * * *
18818279 GAAAACTTTTTACCATTCCAGATTTTTTAAAATTTCTTT-GGAAGGAGTTTTGGCCCCAAACATG
323 GGAAACTTTTTTCGATTCGAGATTTTTTAAAATTT-TTTCGGAAGGAGTTTTGG-CCCAAACTTG
* * * *
18818343 GTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAAGTCAGGTAAAACCTCGAAGTGTA
386 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
18818408 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCA
451 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
18818473 AACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTATGATGAGGGATAGGG
516 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
18818538 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCACAGCCCT
581 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCC-CGGCCCC
* * *
18818603 CCGATCGTCGAAACCCCAATCCCGCCGATCAGGTTCTCCGACGATGCTCTGACGATGGTGCCCTG
644 CCGATCGTCGAAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* * * * * *
18818668 ACGAAGAAAAATGCCGCACCAGCACATGCCCGACCCCAGCATGTGCTACCACAACCCTCAGTTCA
709 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCG
* * ** *
18818733 GTCCGATCTTAGACTGTGAATGCACTGTGTATGCCTAAATCAACCCACGAAATAAGCGTACGGGC
774 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAATAAGCGTGCGGGC
*
18818798 GCTCAACCGGCCAGAGGGGCGGAATGCGTAAGCAG
839 GCTCAACCGGCCAGAGGGGCGG-ATGCGCAAGC-G
* * * * ** * * *
18818833 GGGATCGATTGGGTCCCCTTCTCCGTGCTGTCGATCCTACTACGGCAACCCTCAATCCGGTCTGA
1 GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCACAACCCTCAGTCCAGTCTAA
* * ** *
18818898 TCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCAATGAAACAAGTAGGCGGGTGAGCTG
66 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGG-G-GCGG
* *
18818963 GCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGG
129 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
18819028 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTGTTATGGCTTGTGAATTCATACAATG
194 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
18819093 GTACCTTAAGCCTACACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTG
259 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTG
*
18819158 GAAACTTTTTTCGATTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCGCAAACTTGGT
324 GAAACTTTTTTCGATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC-CAAACTTGGT
* * * * * * *
18819223 AGATGTGATACTTGTCTTTTTGTTGGCGTGCACAAAAACATTTAGGTAAAAACTCGAAGTGTACA
388 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
18819288 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAACAAA
453 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
18819353 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
518 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
18819418 CCAATATAATGGCCAAGTACCAGCACCCATCACACATCATGTGCGTACACCCCCCTGGCCCCCTC
583 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCC-C
** * * * * *
18819483 GATCACCGGAACCCCAATGCCGTCGGTTAGGTTCTCCGACGATGCTCCAACGATGGTGCCCCGAC
646 GATCGTCGAAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * ** * * * *
18819548 GAAGAAAAATGCGGCAGCAGCACATTCCTAAGCCTAGCATTTGCTGTCGTAACCCTCGGTCTGGT
711 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA--C-C---C---T
18819613 CTGGTCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAATC
767 C-GG--TT---C--GG--T---C-C-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAATC
* ** * * * * *
18819678 AACCCATGAAACGAGCGTGCGGGCACTTAGCCAGCCAGAAGGGCAGGATGCGCAAGCCG
815 AACCCACGAAATAAGCGTGCGGGCGCTCAACCGGCCAGAGGGGC-GGATGCGCAAG-CG
* * * * * *
18819737 TGGATCGGTCGGGT-CCCCTTTACGTGCTGCCGATCCTACTACCACAACCCTCAGTCCGGTCCAA
1 GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCACAACCCTCAGTCCAGTCTAA
*
18819801 TCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACC--TCGAAACGAA-C-GG-GGGGGCGG
66 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT-GAAAC-AAGCGGGCGGGGGCGG
* *
18819861 GCGGGCGACTCTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
129 GCGGGC-A--CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
18819926 GGGTTTAGGCACACCTTCATATTTCTGCATGCCAATGCCATTTTTATGTCTTGTAAATTCATACA
191 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
18819991 ATGGTCCCTTAAGCCTT-ACGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
256 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * * *
18820055 TTTGAAACTTTTTGCGGTTAGAAATTTTTTAAAATTATTTTTGGAAGGAGTTTTGGCCCCAAACT
321 TTGGAAACTTTTTTCGATTCGAGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGG-CCCAAACT
* * * * * *
18820120 TGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCTGCTAAAAAATCGAGGTG
384 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
18820185 TACAAGATTTTGTGACCATTTGAAAAAACTGTCCCGATTTCAGACACTTTAATGGCTACTGGCAG
449 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
18820250 CAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCAAGGTTTGATGAGGGATAG
514 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
18820315 GGGACCAATATAAGGGCCAAGTACCAGCACCCGTCGCACATCATGTGCACACACCCCCCCGGCCC
579 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCC
* *
18820380 CCCGATCGTC-AGAACCTCAAGGCCGCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
643 CCCGATCGTCGA-AACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* * * * *
18820444 CGACGAAGAAAAATGTGGTACCAGCACATGCTCGAGCCCAGCATCTGCTGTCGCAACCCTCGGTT
707 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTT
* * ** * *
18820509 CGGTCCAATCATAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCTTA
772 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC-----CT--AAATCAAC-CC--A--C---
* * * ** * * *
18820574 AGTCAAAACATAAAACGAGCGTGAGGGTGTTCAGTCGACCAGAGGGGCAGGATGGGCAAATCG
822 -G----AA-AT---A--AGCGTGCGGGCGCTCAACCGGCCAGAGGGGC-GGATGCGC-AAGCG
* ** * * * * * * *
18820637 GGGATCGA-CTGGGTCTCTTTCTGTGTGTTGCCGATCCTGCT-GCAGCAACCCTCTGTCTAGTCC
1 GGGATCGATC-GGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCA-CAACCCTCAGTCCAGTCT
* ** *
18820700 ACTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGTGGGT
64 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGC-GG-GGGC
* * *
18820765 GGGCGGGCACTATGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTG
127 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
18820830 GGTTTAGCCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
192 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * * *
18820895 TGGTCCCTTACGCCTTCACATTAAGTTTCATGGCAAGACGACTCGTTTTCTGTTTTTTACGACTT
257 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * *
18820960 TCGAAACTTTTTGT-GGTTCGAGATTTTTTAAAA-TTTTTCGGAAGGAATTTTGTTCCCAAACTT
322 TGGAAACTTTTT-TCGATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG-GCCCAAACTT
* *
18821023 GGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
385 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
18821088 ACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGC
450 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
18821153 AAATCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTCGAGGTTTGATGAGGGATAGG
515 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
18821218 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC
580 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
18821272 ACCGTAACCC
Statistics
Matches: 3610, Mismatches: 431, Indels: 245
0.84 0.10 0.06
Matches are distributed among these distances:
855 160 0.04
856 29 0.01
857 43 0.01
858 116 0.03
859 1 0.00
860 2 0.00
861 99 0.03
862 14 0.00
863 19 0.01
864 1 0.00
865 262 0.07
866 13 0.00
867 2 0.00
868 238 0.07
869 31 0.01
870 1 0.00
873 2 0.00
874 113 0.03
875 6 0.00
876 177 0.05
877 152 0.04
878 574 0.16
879 165 0.05
880 2 0.00
881 8 0.00
882 2 0.00
883 2 0.00
884 2 0.00
885 1 0.00
887 2 0.00
888 3 0.00
890 5 0.00
891 2 0.00
893 1 0.00
894 3 0.00
895 2 0.00
897 2 0.00
898 10 0.00
899 3 0.00
900 221 0.06
901 460 0.13
902 275 0.08
903 212 0.06
904 155 0.04
905 6 0.00
906 11 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (871 bp):
GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCACAACCCTCAGTCCAGTCTAA
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGGGCGGGC
GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGGA
AACTTTTTTCGATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCG
TCGAAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGA
AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAATAAGCGTGCGGGCGCTCAAC
CGGCCAGAGGGGCGGATGCGCAAGCG
Found at i:18819647 original size:26 final size:26
Alignment explanation
Indices: 18819618--18819670 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18819608 CTGGTCTGGT
*
18819618 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18819644 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18819670 C
1 C
18819671 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18820556 original size:26 final size:26
Alignment explanation
Indices: 18820520--18820573 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
18820510 GGTCCAATCA
**
18820520 TAGACTGGGAATGAACTTTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
18820546 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
18820572 TA
1 TA
18820574 AGTCAAAACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:18821205 original size:902 final size:901
Alignment explanation
Indices: 18817864--18821271 Score: 4165
Period size: 901 Copynumber: 3.8 Consensus size: 901
18817854 CTGGTCCGAT
* ** ** * * * ** * *
18817864 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGATATGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAAAACATAAAACGAGCGTGAGGGCACTTAGC
* * * ** * * * *
18817929 CGGCTAGAGGGGTGGGATGCGC-AAGCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
66 CAGCCAGAAGGGCAGGATGCGCAAACCGGGGATCGCTCGGGT-CCCCTTTACGTGCTGCCGATCC
* * ** * *
18817993 TGCTACCACAACCCTTAGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCTAA
130 TACTACCACAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * ** * *
18818058 CCGACAAAACAAGCGGGCGGACGGGTGGGCGGGCACTACGTCAG-C-GAGAGACGGGATGCGCAA
195 CC-ATGAAACGAGCGGGCGGGTGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
18818121 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATGTTTCTGCATGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
18818186 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATCAAGTTTCATGGCAAGAC
* * * **** *
18818251 AACTCATTTTCTATTTTTCACGATTTTTGAAAACTTTTTACCATTCCAGATTTTTTAAAATTTCT
389 GACTCGTTTTCTATTTTTCACGATTTTCG-AAACTTTTTGTGGTTCGAGATTTTTTAAAATTT-T
* * * *
18818316 TT-GGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAA
452 TTCGGAAGGAGTTTT-GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAA
* * * *
18818380 AAAAAGTCAGGTAAAACCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATT
* *
18818445 TCAGACATTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18818510 AGTTCTCGAGGTATGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
* * * ** **
18818575 ATCATGTGCGCACAACCCCCACAGCCCTC-CGATCGTC-GAAACCCCAATCCCGCCGATCAGGTT
711 ATCATGTGCGCAC-ACCCCCCCGGCCCCCTCGATCACCAG-AACCCCAAGGCCGCCGATCAGGTT
** * * ** *
18818638 CTCCGACGATGCTCTGACGATGGTGCCCTGACGAAGAAAAATGCCGCACCAGCACATGCCCGACC
774 CTCCGACGATGCTCCAACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTAAGC
* ** * *
18818703 CCAGCATGTGCTACCACAA-CC-C--TC-AGT----TC----A----G--T---C-C-G-AT-
839 CCAGCATCTGCTGTCGCAACCCTCGGTCTGGTCCAATCATAGACTGGGAATGAACTCTGTATG
* * ** ** ** ** * * *
18818740 CTTAGACTGTGAATGCACTGTGTATGCCTAAATCAACCCACGAAATAAGCGT-ACGGGCGCTCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAAAACATAAAACGAGCGTGA-GGGCACTTAG
* * * * * * * * *
18818804 CCGGCCAGAGGGGC-GGAATGCGTAAGCAGGGGATCGATTGGGTCCCCTTCTCCGTGCTGTCGAT
65 CCAGCCAGAAGGGCAGG-ATGCGCAAACCGGGGATCGCTCGGGTCCCCTT-TACGTGCTGCCGAT
** * * ** *
18818868 CCTACTACGGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCC
128 CCTACTACCACAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** * *
18818933 AACCAATGAAACAAGTAGGCGGGTGAGCT-GGCGGGCACTACGCCGGCTAGAGAGACGGGATGCG
193 AACC-ATGAAACGAGCGGGCGGGTG-GGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
*
18818997 CAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
256 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* * * * * *
18819062 CCATTGTTATGGCTTGTGAATTCATACAATGGTACCTTAAGCCTACACCTGAAGTTTCATGGCAA
321 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATCAAGTTTCATGGCAA
* *
18819127 GACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTT-TCGATTCGAGATTTTTTAAAATT
386 GACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGT-GGTTCGAGATTTTTTAAAATT
* * ** * * * *
18819191 TTTTCGAAAGGAGTTTTGGCCGCAAACTTGGTAGATGTGATACTTGTCTTTTTGTTGGCGTGCAC
450 TTTTCGGAAGGAGTTTT-GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAC
* * * *
18819256 AAAAACATTTAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
514 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAA
* *
18819321 TTTCGGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
579 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
18819386 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCAC
644 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
* * * * * * *
18819451 ACATCATGTGCGTACACCCCCCTGGCCCCCTCGATCACCGGAACCCCAATGCCGTCGGTTAGGTT
709 ACATCATGTGCGCACACCCCCCCGGCCCCCTCGATCACCAGAACCCCAAGGCCGCCGATCAGGTT
* *
18819516 CTCCGACGATGCTCCAACGATGGTGCCCCGACGAAGAAAAATGCGGCAGCAGCACATTCCTAAGC
774 CTCCGACGATGCTCCAACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTAAGC
* * * *** *
18819581 CTAGCATTTGCTGTCGTAACCCTCGGTCTGGTCTGGTCTTAGACTGGGAATGAACTCTGTATG
839 CCAGCATCTGCTGTCGCAACCCTCGGTCTGGTCCAATCATAGACTGGGAATGAACTCTGTATG
** * *
18819644 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCATGAAACGAGCGTGCGGGCACTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAAAACATAAAACGAGCGTGAGGGCACTTAGC
* * *
18819709 CAGCCAGAAGGGCAGGATGCGCAAGCCGTGGATCGGTCGGGTCCCCTTTACGTGCTGCCGATCCT
66 CAGCCAGAAGGGCAGGATGCGCAAACCGGGGATCGCTCGGGTCCCCTTTACGTGCTGCCGATCCT
* *
18819774 ACTACCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAAC
131 ACTACCACAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * *
18819839 C-TCGAAACGAACGGGGGGGCGGGCGGGC-GACTCTACGTCGGCCAGAGAGATGGGATGCGCAAG
196 CAT-GAAACGAGCGGGCGGGTGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
*
18819902 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCTGCATGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
18819967 TTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTT-ACGTCAAGTTTCATGGCAAGACG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATCAAGTTTCATGGCAAGACG
* * * * *
18820031 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTAGAAATTTTTTAAAATTATTTT
390 ACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGTGGTTCGAGATTTTTTAAAATT-TTTT
* *
18820096 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAAAAAA
454 CGGAAGGAGTTTT-GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * * * *
18820161 AAATTCTGCTAAAAAATCGAGGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCGATTTC
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTC
*
18820226 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAG
583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * *
18820291 TTGTCAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCGTCGCACAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
* ** *
18820356 CATGTGCACACACCCCCCCGGCCCCC-CGATCGTCAGAACCTCAAGGCCGCCGATCAGGTTCTCC
713 CATGTGCGCACACCCCCCCGGCCCCCTCGATCACCAGAACCCCAAGGCCGCCGATCAGGTTCTCC
* * * *
18820420 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGTACCAGCACATG-CTCGAGCCCA
778 GACGATGCTCCAACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCT-AAGCCCA
*
18820484 GCATCTGCTGTCGCAACCCTCGGT-TCGGTCCAATCATAGACTGGGAATGAACTTTGTATG
842 GCATCTGCTGTCGCAACCCTCGGTCT-GGTCCAATCATAGACTGGGAATGAACTCTGTATG
* * **
18820544 CTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAAAACATAAAACGAGCGTGAGGG-TGTTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAAAACATAAAACGAGCGTGAGGGCACTT-AG
* * * * * * ** *
18820608 TC-GACCAGAGGGGCAGGATGGGCAAATCGGGGATCGACT-GGGTCTCTTTCTGTGTGTTGCCGA
65 CCAG-CCAGAAGGGCAGGATGCGCAAACCGGGGATCG-CTCGGGTCCCCTT-TACGTGCTGCCGA
* * * * *
18820671 TCCTGCT-GCAGCAACCCTCTGTCTAGTCCACTCTTAGACTGGGAATGAACTCCGTATGCCTAAG
127 TCCTACTACCA-CAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
18820735 CCAACCGATGAAATGAGCGGGCGGGTGGGTGGGCGGGCACTATGCCGGCCAGAGAGACAGGATGC
191 CCAACC-ATGAAACGAGCGGGCGGGTGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * * *
18820800 GCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTACGTGCCAAT
255 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
18820865 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTACGCCTTCACATTAAGTTTCATGGCA
320 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATCAAGTTTCATGGCA
* * *
18820930 AGACGACTCGTTTTCTGTTTTTTACGACTTTCGAAACTTTTTGTGGTTCGAGATTTTTTAAAA-T
385 AGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGTGGTTCGAGATTTTTTAAAATT
* *
18820994 TTTTCGGAAGGAATTTTGTTCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAC
450 TTTTCGGAAGGAGTTTTG-CCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAC
*
18821059 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCAA
514 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAA
*
18821124 TTTCAGACACTTTAATGGCTACTGGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
579 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
18821189 TGTGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
644 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
18821254 ACATCATGTGCGCACACC
709 ACATCATGTGCGCACACC
18821272 ACCGTAACCC
Statistics
Matches: 2197, Mismatches: 280, Indels: 84
0.86 0.11 0.03
Matches are distributed among these distances:
875 2 0.00
876 76 0.03
877 129 0.06
878 376 0.17
879 170 0.08
880 1 0.00
882 2 0.00
883 2 0.00
887 2 0.00
891 1 0.00
895 1 0.00
897 1 0.00
899 6 0.00
900 301 0.14
901 464 0.21
902 293 0.13
903 206 0.09
904 162 0.07
905 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAAAACATAAAACGAGCGTGAGGGCACTTAGC
CAGCCAGAAGGGCAGGATGCGCAAACCGGGGATCGCTCGGGTCCCCTTTACGTGCTGCCGATCCT
ACTACCACAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CATGAAACGAGCGGGCGGGTGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATCAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
GTGCGCACACCCCCCCGGCCCCCTCGATCACCAGAACCCCAAGGCCGCCGATCAGGTTCTCCGAC
GATGCTCCAACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTAAGCCCAGCAT
CTGCTGTCGCAACCCTCGGTCTGGTCCAATCATAGACTGGGAATGAACTCTGTATG
Found at i:18823047 original size:26 final size:26
Alignment explanation
Indices: 18823011--18823063 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18823001 CCAGTCCGAT
*
18823011 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18823037 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18823063 C
1 C
18823064 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18823479 original size:810 final size:811
Alignment explanation
Indices: 18821916--18823543 Score: 2211
Period size: 810 Copynumber: 2.0 Consensus size: 811
18821906 GACACTTTAA
* * *
18821916 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
1 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTCAGTTCTAGAGGTT
* * *
18821981 TGATGAGGGATAGGAGGCCAATATATGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
66 TGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA-GTACGCAC
* * * * * *
18822046 ACCCCTCTCGGCCCCCTCGATCGCCGGAATCCCAATGCCGTCGATCAGGTTCTCTGGCGATGCTC
130 ACCCCTCTCGGACCCCTCGATCACCGAAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTC
* * **
18822111 CGACAATGGTGCCTCGACGAAGAAAAATACAGTACCAGCACATGCCCGAGCCCAACATGTGCTGC
195 CGACAATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAACATGTGCCAC
* * * *
18822176 CGTAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGGACTCCGTATGCTTAGACCGTGAATGA
260 CGTAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACCGGGAATGA
* * * *
18822241 ACTTGTATGTCTAAGTCAACTCGAGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGA
325 ACTCGTATGCCTAAGTCAACTCCAGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTGGGA
* * * * * *
18822306 TGCGTAACCGGAGGATCGGTCGGGTGCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTTG
390 TGCGCAACCAGAGGATCAGCCGGGTGCCCCTCTGCGTACTGCCGATCCTGCTGCCACAAACCTTG
* ** * *
18822371 GTCCGGTCTGATCTTAGACTAGGAATGAACTTCGTATGCCGAAGCCAACCGACGAAACGAACGGG
455 GTCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCGAAGCCAACCGAC-AAAC-AACGAG
* * * * **
18822436 CGGGCGGACGGGTAGGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGG
518 CAGACGGACGGGCAGGCACTATGCCAGCCAGAGAGACGGGATGCGAAAGTCGTGGATCGATACAG
* * * * * **
18822501 TGGTATGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAACACCATTTTTATGGCTTGTAAA
583 TGGTAGGTGGCTTCAGGAACATCTTCATATTTCTACGTGCCAACACCATTTTTATGGCTTGTAAA
*
18822566 TTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
648 TTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
* * * *
18822631 TCACAAATTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGG-TGTTTTGGG
713 TCACAAATTTTCAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAT-TTTTGGC
18822695 ACCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
777 ACCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
18822730 TGGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCACTTTAAGGGGGTGTCAGTTCTAGAGGTT
1 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTCAGTTCTAGAGGTT
* * * *
18822795 TGATGAGGGATAGGGGGTCAATATAAGGGCCAAGTGCCAGCACCCATCACACATCA-TACGTACA
66 TGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAGTACGCACA
* * * *
18822859 CCCTTC-CTGACCCCTCTGATCATCGAAACCCCAATGCCGTC-AGTCAGGTTCTCCGATGATGCT
131 CCCCTCTCGGACCCCTC-GATCACCGAAACCCCAATGCCGTCGA-TCAGGTTCTCCGACGATGCT
** *** * * *
18822922 CC-AGTGATGGTGCCCCGACGAAGAAAAATGTGGCATCAGCACATGCCTGAGTCCAACATGTGCC
194 CCGA-CAATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAACATGTGCC
* * *
18822986 ACCGTAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAAT
258 ACCGTAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACCGGGAAT
*
18823051 GAACTCCGTATGCCTAAGTCAAC-CCACGAAATGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGT
323 GAACT-CGTATGCCTAAGTCAACTCCA-GAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGT
* * * *
18823115 GGGATGCGCAAGTCAG-GGATCAGCCTGGT-CCCTCTCTGCGTACTGTCGATCCTGCTGCCATAA
386 GGGATGCGCAA-CCAGAGGATCAGCCGGGTGCCC-CTCTGCGTACTGCCGATCCTGCTGCCACAA
* *
18823178 ACCTTGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AA-AA
449 ACCTTGGTCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCGAAGCCAACCGACAAACAA
* * *
18823241 TGAGCAGACGGGCGGGCAGGCACTATGCC-GACCAGAGAGATGGGATGCGAAAG-CTGTGGATCG
514 CGAGCAGACGGACGGGCAGGCACTATGCCAG-CCAGAGAGACGGGATGCGAAAGTC-GTGGATCG
**
18823304 ATACAGTGGTAGGTGGACTTCAGGAACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
577 ATACAGTGGTAGGTGG-CTTCAGGAACATCTTCATATTTCTACGTGCCAACACCATTTTTATGGC
* *
18823369 TTGTAAATTCATACAATGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
641 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCATTTT
** *
18823434 CTATTTTTCA-TGATTTTCAATACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAT
706 CTATTTTTCACAAATTTTCAA-ACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAT
*
18823498 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
770 TTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
18823540 TGGC
1 TGGC
18823544 ATGCAAAAAA
Statistics
Matches: 711, Mismatches: 91, Indels: 28
0.86 0.11 0.03
Matches are distributed among these distances:
808 2 0.00
809 73 0.10
810 194 0.27
811 13 0.02
812 166 0.23
813 149 0.21
814 114 0.16
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.26
Consensus pattern (811 bp):
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTCAGTTCTAGAGGTT
TGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAGTACGCACA
CCCCTCTCGGACCCCTCGATCACCGAAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCC
GACAATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAACATGTGCCACC
GTAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACCGGGAATGAA
CTCGTATGCCTAAGTCAACTCCAGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTGGGAT
GCGCAACCAGAGGATCAGCCGGGTGCCCCTCTGCGTACTGCCGATCCTGCTGCCACAAACCTTGG
TCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCGAAGCCAACCGACAAACAACGAGCAG
ACGGACGGGCAGGCACTATGCCAGCCAGAGAGACGGGATGCGAAAGTCGTGGATCGATACAGTGG
TAGGTGGCTTCAGGAACATCTTCATATTTCTACGTGCCAACACCATTTTTATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCA
CAAATTTTCAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCACCA
AACTTGGTAGACGTGATCCTTGTATTTTTGT
Found at i:18823941 original size:26 final size:26
Alignment explanation
Indices: 18823903--18823955 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18823893 CTAGTTCAAT
* *
18823903 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18823929 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18823955 C
1 C
18823956 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18826551 original size:26 final size:26
Alignment explanation
Indices: 18826513--18826563 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18826503 CTGGTCTGAT
18826513 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
* *
18826539 CTTAGACTTGGAATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
18826564 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:18827442 original size:26 final size:26
Alignment explanation
Indices: 18827406--18827458 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18827396 CTGGTCCAAT
*
18827406 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18827432 CTTAGATTGGGAATGATCTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18827458 C
1 C
18827459 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18827848 original size:893 final size:892
Alignment explanation
Indices: 18826106--18829255 Score: 4161
Period size: 893 Copynumber: 3.5 Consensus size: 892
18826096 AACTTTTTAA
* *
18826106 GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAACTAAA
1 GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAACAAAAAATTCAACTAAA
* ** * * *
18826171 AACTCTAAGTGTACAAGATTTTACGACCATTTGAAAAAAGTGTCCCAATTTCGGACACTTTAAAG
66 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * * *
18826236 GCTACTGACAGCAAACCTGTAAATTCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTTGAGGTTTG
131 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
18826301 ATGAGGGATAGGGGGCCAATAT-AAGTACCAAGTACCAGCACCCACCGCACATCATGTGCGCACA
196 ATGAGGGATAGGGGGCCAATATAAAG-GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
** * *
18826365 CCCCATGGCCCCCCGATCATCGGAACCCCAATGCCG-CTGGTCAAGTTATCTGGCGATGCTCC-A
260 CCCCA-GGCCCCCCGATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTCTGGCGATGCTCCGA
* * * *
18826428 GCGATGGTGCCCGACAAAGAAAAATGCGACACCAACACATGCCCGAGCCCAGCATGTGCTGTCGT
323 -CGATGGTGCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCAAGCATGTGCTGTCGC
* * *
18826493 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATACTTAGACTTGGAATGAACT
387 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * *
18826558 CTGTATGCCTAAGTCAACCCACGAAACGAGCATGCG-GGTGCTCAATCGGCCAGAAAGGCGGGAT
452 CCGTATGCCTAAGTCAACCCACGAAACGAGCATG-GAGGTGCCCAACCGACCAGAAGGGCGGGAT
* * ** * * *
18826622 GCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTACTGCTGC-AACCTCGA
516 GCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTACCGATCCTACTACAGCAAACCTCGA
* * * * * * *
18826686 TCTGGACTGATCTTAAATTGGGAATGAACTCCGTATGCGTAAGCCAACCGACAAAACGAGCGGGC
581 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGC
* * * * * *
18826751 GGGCGGGCACTACGTCAGCCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTTGGTG
646 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCATAAGTCGTGGATCGATAGGGTGGTAGGTG
*
18826816 GGATTAGGCACATCTTTATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
711 GGTTTAGGCACATCTTTATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
18826881 TGGTCCCTTAAGCCTTCACGTGAAGTGTCGTGGCAAGACGACTT-GTTTTCTATTTTTCATGATT
776 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA-TTCGTTTTCTATTTTTCATGATT
** *
18826945 TTTGAAACTTTTTGAGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTT
840 TTCAAAACTTTTTGAGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
** * * *
18826998 TCCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC-TCTAAAAATTCAGCTAAA
1 GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAACAAAAAATTCAACTAAA
* *
18827062 AACTCGAAGTGTACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATG
66 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
18827127 GCTACTGGCAGCAAACCTGTAAAATGTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
131 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * *
18827192 ATGAGGGATAGGGGGCCAATATAAAGGCCAAGCT-TCAGCGCCCATCGTACATCATGTGCGCACA
196 ATGAGGGATAGGGGGCCAATATAAAGGCCAAG-TACCAGCACCCATCGCACATCATGTGCGCACA
*
18827256 CCCCCAGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGTGATGCTCCGA
260 -CCCCAGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGA
* ** * * *
18827321 CGATGGTGGCCCGGCGAAGAAAAATATGGCGCCAGTACATGCCCGAGCCAAGCATGTGCTGTCGC
323 CGATGGT-GCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCAAGCATGTGCTGTCGC
* * *
18827386 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGATCT
387 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * *
18827451 CCATATGCCTAAGTCAACCCACGAAATGAGCATGGAGGTGCCCAACCGACCAGAAGGGCGGGATC
452 CCGTATGCCTAAGTCAACCCACGAAACGAGCATGGAGGTGCCCAACCGACCAGAAGGGCGGGATG
* * * *
18827516 CGTAAGCCAGGGATCGACCGGGTCCCCTTCTGTGTGCTACCGATCCTACTACAGCAAACCTCGGT
517 CGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTACCGATCCTACTACAGCAAACCTCGAT
* *
18827581 CTGGTCCGATCCTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGAGCGGGCG
582 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCG
* *
18827646 GGCGGGCACTATGCCGGCTAGAGAGACGGGATGCATAAGTCGTGGATCGATAGGGTGGTAGGTGG
647 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCATAAGTCGTGGATCGATAGGGTGGTAGGTGG
* *
18827711 GTTTAGGCACATCTTTATATTTCTACGTGCCAATGCCATTTTTAT-ACTTGTAAATTCATTCAAT
712 GTTTAGGCACATCTTTATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
18827775 GGTCCCTTAAGCCTTCACGTAAAGTTTCCTGGCAAGATGATTCGTTTTCTATTTTTCACGATTTT
777 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCATGATTTT
* *
18827840 CAAAACTTTTT-ACGGTTCGAAATTTTTTAAAATTTTTTTGGAAGGAGTTTT
842 CAAAACTTTTTGA-GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
*
18827891 GGCCCCAAAATTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC-ACAAAACAATTCAACTAA
1 GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAACAAAA-AATTCAACTAA
* * * *
18827955 AAACTCGCAGTGTACAAGATTTTGTGACCATATGAAAAAAGTGTCCCCATTACGGACACTTTAAT
65 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
18828020 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA-GTTT
130 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
18828084 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
195 GATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * *
18828149 CCCC-GCCCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGG
260 CCCCAG--GCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGA
* * * *
18828213 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGGCTGAGCCCAA-CATGTGCTGTTG
323 CGATGGTG-CCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAG-CCAAGCATGTGCTGTCG
* * * * *
18828277 CAACCCTCAGT-TCGATCCGATCTTAGACTGGGAATGAACTCCATATGTTTAGACAGGGAATGAA
386 CAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* *
18828341 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCAT--ACGG-GCACTC-AGCTAGCCA-AAGGGG
450 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGGA-GGTGC-C-CAACCGA-CCAGAA-GGG
* * *
18828401 CGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTACCAATCCTGCTACCA-CAA
510 CGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTACCGATCCTACTA-CAGCAA
* * * *
18828465 CCCTCGATTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTAACGAAACG
574 ACCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACG-AA--
*
18828530 AGCGGACGGGCAGGTGGGCGGGCAGGCCAACGGGCACTACGCCGGCCAGAGAGACGGGTTACGCA
636 A-C-GA---GC----GGGC--G--GG----CGGGCACTACGCCGGCCAGAGAGACGGG--ATGCA
* * * *
18828595 -AA-TCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTATGTGCCAATG
682 TAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACGTGCCAATG
*
18828658 CCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
747 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * *
18828723 GACGACTCGTTTTCTATTTTTAATGATTTTCAAAACTTTTTGCGGTTCAAGATTTTTTTAAATTT
812 GACGATTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGAGGTTCGAGATTTTTTAAAATTT
*
18828788 TTTCGGAAGTAGTTTT
877 TTTCGGAAGGAGTTTT
** * * *
18828804 GGCCCCAAACTTATTAGACGTGATCCTTGTATTTTTGTTGGCATGCATA-AAAAATTTCAGCTAA
1 GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-ACAAAAAATTCAACTAA
* * * *
18828868 CAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATATCCCCATTTCAGACACTTTATT
65 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
18828933 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTATAAGGGGGTGTGAGTTCTCGGGGTTT
130 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
18828998 GATGAGGGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT--GCACA
195 GATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * *
18829060 ---CA--CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTAAGATTCTCCGACGATGCTCTGACG
260 CCCCAGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACG
** * * *
18829120 ATGGTGCCTCGGTGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTG-CTGTA
325 ATGGTGCC-CGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCAAGCATGTGCTGTC-GCA
* * *
18829184 ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTT
388 ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
18829249 CGTATGC
453 CGTATGC
18829256 TTAGACTGGG
Statistics
Matches: 1985, Mismatches: 217, Indels: 99
0.86 0.09 0.04
Matches are distributed among these distances:
890 3 0.00
891 197 0.10
892 416 0.21
893 444 0.22
894 292 0.15
895 1 0.00
896 1 0.00
897 2 0.00
900 2 0.00
904 9 0.00
905 160 0.08
906 2 0.00
908 3 0.00
911 5 0.00
912 93 0.05
913 326 0.16
914 28 0.01
915 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAACAAAAAATTCAACTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
CCCAGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGA
TGGTGCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCAAGCATGTGCTGTCGCAACC
CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGTCAACCCACGAAACGAGCATGGAGGTGCCCAACCGACCAGAAGGGCGGGATGCGCA
AGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTACCGATCCTACTACAGCAAACCTCGATCTGG
TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCG
GGCACTACGCCGGCCAGAGAGACGGGATGCATAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTTATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCATGATTTTCAAA
ACTTTTTGAGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
Found at i:18828335 original size:26 final size:26
Alignment explanation
Indices: 18828299--18828349 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18828289 CGATCCGATC
*
18828299 TTAGACTGGGAATGAACTCCATATGT
1 TTAGACAGGGAATGAACTCCATATGT
*
18828325 TTAGACAGGGAATGAACTCCGTATG
1 TTAGACAGGGAATGAACTCCATATG
18828350 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACAGGGAATGAACTCCATATGT
Found at i:18829239 original size:26 final size:26
Alignment explanation
Indices: 18829203--18829281 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
18829193 CTGGTCTGAT
18829203 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
18829229 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
18829255 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
18829281 C
1 C
18829282 CTAAGTCAAC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:18829455 original size:26 final size:26
Alignment explanation
Indices: 18829417--18829468 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
18829407 TGGTCCAATT
* * *
18829417 TTAGATTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
*
18829443 TTAGACTGTGAATAAACTCCGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
18829469 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGC
Found at i:18830342 original size:26 final size:26
Alignment explanation
Indices: 18830313--18830365 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18830303 CTGGTCCGAT
18830313 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18830339 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18830365 C
1 C
18830366 CTAAGTCAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18831380 original size:647 final size:641
Alignment explanation
Indices: 18830107--18831410 Score: 1753
Period size: 667 Copynumber: 2.0 Consensus size: 641
18830097 GTTCTCAAGG
*
18830107 TTTGATGAGGGATAGGGGGCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
1 TTTGATGAGGGATAGGGGGCAATAAAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * **
18830172 CACCCCCTAGCCCCTCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTTCGACGATGGTGC
66 AACCCCCCAGCCCCCCCGATCACCAAAACCCCAATGCCACCGGTCAGGTTCTTCGACGATGGTGC
* * * **
18830237 CCTGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCGTAGCATGTGCTGCCGCAACCCTCGG
131 CCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGG
* **
18830302 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
196 TCCGGTCCGATCTTAGACTGGGAATGAACTCCAAATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * *
18830367 TAAGTCAGCACACGAAACGTGCGTGCCAACACTCAACCGGCCATAGGGGCGGGATGCGCGAGCCG
261 TAAGTCAACACACAAAACGAGCGTACCAACACTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCG
* *
18830432 GGGATCGACCGCGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTTGGTTCGGTCCGA
326 GGGATCGACCGCGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCGGTCCGA
* *
18830497 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGG
391 TCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGA-----------GGC-G
* * *
18830562 GCAGGCGGGCAGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGG
444 G-AGGC-GGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGG
* * *
18830627 TAGGTACGTTTAGGCAAATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTC
507 TAAGTACGTTTAGGCAAATCTTCATATTTCCACATGCCAATGCCATTTTTATGGCTTGTAAATTC
*
18830692 ATACAATAGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCA
572 ATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCA
18830757 CGATT
637 CGATT
*
18830762 TTTGATGAGGGATAGGGGGCCAGTAAAAGGGCCACA-TACCAGCACCCATCGCA-ATCATGTGCG
1 TTTGATGAGGGATAGGGGG-CAATAAAAGGGCCA-AGTACCAGCACCCATCGCACATCATGTGCG
* * *
18830825 CATAACCCCCCGGCCCCCCCGATCACCAAAAGCCTAATGCCACCGGTCAGGTTCTCCGACGATGC
64 CA-AACCCCCCAGCCCCCCCGATCACCAAAACCCCAATGCCACCGGTCAGG-T-T----C--T--
*
18830890 TCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCT
118 T-CGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCT
* *
18830955 GTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCAAATGCTTAGATTGGGAAT
182 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCAAATGCTTAGACTGGGAAT
* ***** *
18831020 GAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGTGCTCAACGGGCCAGAGGGGCG
247 GAACTCCGTATGCCTAAGTCAACACACAAAACGAGCGTACCAACACTCAACCGGCCAGAGGGGCG
** * ** *
18831085 GGATGCGCAAG-CGAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCTTGCTGCCACAACC
312 GGATGCGCAAGCCG-GGGATCGACCGCGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACC
*
18831149 CTCGGTCCGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGA-
376 CTCGGTCCGGTCCGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
18831213 GC-G-GGC-G-A-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTG
441 GCGGAGGCGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTG
** * *
18831273 GTAAGTGGGTTTAGGCACATCTTCATATTTCCGCATGCCAATGCCATTTTTATGGCTTGTAAATT
506 GTAAGTACGTTTAGGCAAATCTTCATATTTCCACATGCCAATGCCATTTTTATGGCTTGTAAATT
* *
18831338 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
571 CATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTC
18831403 ACGATT
636 ACGATT
18831409 TT
1 TT
18831411 CAAAACTTTT
Statistics
Matches: 575, Mismatches: 59, Indels: 38
0.86 0.09 0.06
Matches are distributed among these distances:
647 177 0.31
648 1 0.00
649 1 0.00
651 3 0.01
653 1 0.00
655 33 0.06
656 68 0.12
657 2 0.00
658 1 0.00
662 1 0.00
664 1 0.00
666 3 0.01
667 283 0.49
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (641 bp):
TTTGATGAGGGATAGGGGGCAATAAAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
AACCCCCCAGCCCCCCCGATCACCAAAACCCCAATGCCACCGGTCAGGTTCTTCGACGATGGTGC
CCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGG
TCCGGTCCGATCTTAGACTGGGAATGAACTCCAAATGCTTAGACTGGGAATGAACTCCGTATGCC
TAAGTCAACACACAAAACGAGCGTACCAACACTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCG
GGGATCGACCGCGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCGGTCCGA
TCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGAGGCGGCAGGC
ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAAGTACGTTTAGG
CAAATCTTCATATTTCCACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCT
TAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
Found at i:18831914 original size:26 final size:26
Alignment explanation
Indices: 18831878--18831930 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18831868 CTGGTCTGAT
18831878 CTTACACTGGGAATGAAC-TTCGTATG
1 CTTACACTGGGAATGAACGTT-GTATG
*
18831904 CTTAGACTGGGAATGAACGTTGTATG
1 CTTACACTGGGAATGAACGTTGTATG
18831930 C
1 C
18831931 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACGTTGTATG
Found at i:18832829 original size:26 final size:26
Alignment explanation
Indices: 18832777--18832829 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18832767 CCGCTTCGAT
* **
18832777 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCAAATG
18832803 CTTAGACTGGCAATGAACTCCAAATG
1 CTTAGACTGGCAATGAACTCCAAATG
18832829 C
1 C
18832830 GTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCAAATG
Found at i:18833715 original size:26 final size:26
Alignment explanation
Indices: 18833677--18833755 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
18833667 TCCGGCTGAT
*
18833677 CTTAGACTCGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
18833703 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
18833729 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
18833755 C
1 C
18833756 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:18834233 original size:924 final size:907
Alignment explanation
Indices: 18830762--18834625 Score: 5023
Period size: 904 Copynumber: 4.3 Consensus size: 907
18830752 TTTCACGATT
* *
18830762 TTTGATGAGGGATAGGGGGCCAGTAAAAGGGCCACA-TACCAGCACCCATCGCA-ATCATGTGCG
1 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCA-AGTACCAGCACCCATCGCACATCA--TGCG
* ** ** * * *
18830825 CATA-ACCCCCCGGCCCCCCCGATCACCAAAAGCCTAATGCCACCGGTCAGGTTCTCCGACGATG
63 CACACACCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATG
18830889 CTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGC
128 CTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGC
* **
18830954 TGTCGCAACCCTCGG--T----C-CGGTC-CGATCTTAGACTGGGAATGAACTCCAAATGCTTAG
193 TGCCGCAACCCTCGGTCTGCGACTCGGTCTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * *
18831011 ATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGTGCTCAACGGGCC
258 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCC
* * * *
18831076 AGAGGGGCGGGATGCGCAAG-CGAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCTTGCT
323 AGAGGGGCGGGATGCGCAAGCCGA-GGATCGATCGGGTCCCCCTCTGCGAGCTGTCAATCCTGCT
* * *
18831140 GCCACAACCCTCGGTCCG-GTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCG
387 GCCACAACCCTCAGTCCGATTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* *
18831204 ACG-AA--A-C--GA--GCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGG
451 ACGAAATGAGCGGGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
18831261 ATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCCGCATGCCAATGCCATTTTTAT
516 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
18831326 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
581 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *
18831391 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTTGGAAGG
646 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGG
* * * * ** * *
18831456 ATTTTTGGCCCCGAACTTGGTAGACATGATCCTTTTATTTTTTTTGGCATGTACAAAAAAATTCA
711 AGTTTTGGCCCCAAACTTGGTAGACATAATCCTTGTACGTTTGTTGGCATGCACAAAAAAATTCA
* * * *
18831521 CCTAAAAAATCGAAGTGTACAAGATTTTGTGACCACTTGAAAAATGTGTCCCCATTTCAGACACT
776 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * * * **
18831586 TTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGGTATCAGTTCTTGA
841 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCAA
18831651 GG
906 GG
* **
18831653 TTAAAT-ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATTTG
1 TT---TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCG
* *
18831717 CACACACCCCCCGGCCCCCCCAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATG
63 CACACACCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATG
* * *
18831782 ATCTGGCGATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGC
128 CTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGC
* * * * * *
18831847 CGTCACAACCCTCGGTCTG-GTCT-GGTCT-GATCTTACACTGGGAATGAACTTCGTATGCTTAG
193 TGCCGCAACCCTCGGTCTGCGACTCGGTCTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * ** *
18831909 ACTGGGAATGAACGT-TGTATGCCTAAGTCAACTCACAAAATAAGCGTGCGGGTGATCA--CGGC
258 ACTGGGAATGAAC-TCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGC
* ** *
18831971 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTAC-ATGCTGTCAATCCTGC
322 CAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGA-GCTGTCAATCCTGC
* * * * * * * * *
18832035 AGCCATAACCCTCAGTCTGATCCAATCTTAGACTAGCAATGAACTCCGTATGCCTAATCCAACTG
386 TGCCACAACCCTCAGTCCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * *
18832100 ATGAAACGAGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGCTACGCAAGCCGTGG
451 ACGAAATGAGCGGGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
18832165 ATCGAAAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
516 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
*
18832230 GGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAAGACGACTCGT
581 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
** ** * *
18832295 TTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTTTAAAA-TTTTTTGGAA
646 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGA--TTTTTTAAAATTTTTTTGGAA
* *
18832359 GGAGTTTTGGCCCCGAACTTGGTAGACATAATCCTTGTACGTTTGTTGGCATGCCCAAAAAAATT
709 GGAGTTTTGGCCCCAAACTTGGTAGACATAATCCTTGTACGTTTGTTGGCATGCACAAAAAAATT
18832424 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
774 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
18832489 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAAGGGGTGTGAGTTGTC
839 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTC
18832554 AAGG
904 AAGG
*
18832558 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATACGCGC
1 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT--GCGC
* * * *
18832623 ACAC-CCCCCCGGCCCCCCAGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCCGTGACGC
64 ACACACCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGC
* *
18832687 TCCGACGATGGTGCCCCGACGAAGAAAAATACGGCTCCAGCACATGCCCAAGCCCAGCATGTGCT
129 TCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCT
18832752 GCCGCAACCCTCGGTC--CG---C--T-TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
194 GCCGCAACCCTCGGTCTGCGACTCGGTCTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* ** * * * * *
18832809 CTGGCAATGAACTCCAAATGCGTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCTA
259 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCA
* * * * * * *
18832874 GAGGGGCGGGATACGCAAGCCGGGGATCAATCGGCTCCCCCTCTACGTGCCGTCAATCCTGCTGC
324 GAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGAGCTGTCAATCCTGCTGC
** ** * * *
18832939 TGCAACCCTTGGTCCGATTTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACA
389 CACAACCCTCAGTCCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
** * *
18833004 AAATGAGCGGCGAGCGGGCGAACGGTC-CTTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTG
454 AAATGAGCGG-GA--GGGCGGGCGGGCAC-TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * * * * * *
18833068 GATCGATAGCGTGGTAGGTGGGTCTAGACAAATCGTCATATTTTTGCGTGCCAATGCCATTTTTA
515 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * * * *
18833133 TGGCTTGTAAATTCATATAATGGTCCTTTAAGCCTTCATGAGAAGTTTCATGGCAAGACGACTCA
580 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
*
18833198 TTTTCTATTTTTCAAGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCT-GAA
645 TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT-TGGAA
* * * * * **
18833262 GGACTTTTAGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATT
709 GGAGTTTTGGCCCCAAACTTGGTAGACATAATCCTTGTACGTTTGTTGGCATGCACAAAAAAATT
18833326 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
774 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
18833391 CTTTAATGGCGACTCGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGAGTGTGAGTTCTC
839 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTC
18833456 AAGG
904 AAGG
* **
18833460 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGCGTGC
1 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCAC
* * * * *
18833525 GC-CCCCCCGGACCACCGCGATCGTCGAAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGTTGCT
66 ACACCCCCCGG-CCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCT
* * ** *
18833589 CCGGCGTTGGTGCCCC-AGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
130 CCGGCGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCT
18833653 GCCGCAACCCTCGGTCCGGCTGATCTTAGACTCGGAATGAACTACGTATGCTTAGACTGGGAATG
194 GCCGCAACCCTCGGT----CTG--C---GACTCGG--T---CT-CG-AT-CTTAGACTGGGAATG
* *
18833718 AACTACGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
242 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGC
** * * * * ** *
18833783 GATTGCTCAGCCGACCAGAGGGGCGGAATGCGTAAGTCGAATATCGATCGGGTCCCCCTCTGTGA
307 GGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGA
* * * * *
18833848 GCTGTCAGTCTTGCTGCTACAACCCTCAGTCCAAGTTCGATCTTAGACTGGGAATGAACTCTGTA
372 GCTGTCAATCCTGCTGCCACAACCCTCAGTCCGA-TTCGATCTTAGACTGGGAATGAACTCCGTA
*
18833913 TGCCTAAGCCAACCGACGAAATGAGCGGGAGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGG
436 TGCCTAAGCCAACCGACGAAATGAGCGGGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
*
18833978 ATGCGCAAGCCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
501 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
18834043 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
566 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * *
18834108 GGCAAGACGACTCGTTTTCTCTTTTTCACGATTTTTAAAA-TGTTTTGCGGTTTGAGATTTTTTA
631 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT-TTTTACGGTTCGAGATTTTTTA
*
18834172 AAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTACGTTTGTTGGCA
695 AAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATAATCCTTGTACGTTTGTTGGCA
* * *
18834237 TGCCCAAAAAAATTCAGCTAAAAACTTGAGGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
760 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * * *
18834302 CCCCATTT-AGACACTTTATTGGCTACTAGCAGTAAACGTGTAAAATCTCAAACGCTCTTTAAGG
825 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGG
**
18834366 GGGTGTGAGTTCTTGAGG
890 GGGTGTGAGTTCTCAAGG
* * *
18834384 TTTGATGAGGGATAGGGGGCCGATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTG--C
1 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCAC
* * * *
18834447 GCACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTC
66 ACACCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC
* ** * * * *
18834512 CGGCGATGGTGCCCTGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTACTAC
131 CGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGC
* *
18834577 CGTAACCCTCAGTCT--GA-----TC-CGATCTTAGACTGGGAATGAACTCCGTATG
196 CGCAACCCTCGGTCTGCGACTCGGTCTCGATCTTAGACTGGGAATGAACTCCGTATG
18834626 ACTAAGCAAA
Statistics
Matches: 2594, Mismatches: 302, Indels: 148
0.85 0.10 0.05
Matches are distributed among these distances:
891 2 0.00
892 6 0.00
893 172 0.07
894 5 0.00
895 1 0.00
896 110 0.04
897 30 0.01
898 88 0.03
899 81 0.03
900 15 0.01
901 235 0.09
902 206 0.08
903 110 0.04
904 525 0.20
905 197 0.08
906 10 0.00
909 1 0.00
911 2 0.00
912 1 0.00
915 1 0.00
918 2 0.00
919 1 0.00
922 118 0.05
923 11 0.00
924 389 0.15
925 68 0.03
926 151 0.06
927 56 0.02
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (907 bp):
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCAC
ACACCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC
CGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGC
CGCAACCCTCGGTCTGCGACTCGGTCTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCAGA
GGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGAGCTGTCAATCCTGCTGCCA
CAACCCTCAGTCCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ATGAGCGGGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTT
TGGCCCCAAACTTGGTAGACATAATCCTTGTACGTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
Found at i:18836296 original size:26 final size:26
Alignment explanation
Indices: 18836245--18836297 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18836235 TCGATCCGAT
*
18836245 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18836271 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18836297 C
1 C
18836298 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18836497 original size:24 final size:24
Alignment explanation
Indices: 18836467--18836516 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
18836457 CTAAGCCAAC
18836467 CGACGAAACGAGCGTGCGGGCGGA
1 CGACGAAACGAGCGTGCGGGCGGA
18836491 CGACGAAACGAGCGTGCGGGCGGA
1 CGACGAAACGAGCGTGCGGGCGGA
18836515 CG
1 CG
18836517 GGCGAGCACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.26, G:0.46, T:0.04
Consensus pattern (24 bp):
CGACGAAACGAGCGTGCGGGCGGA
Found at i:18837248 original size:26 final size:26
Alignment explanation
Indices: 18837219--18837271 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18837209 CCGGTCTGAT
18837219 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18837245 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18837271 C
1 C
18837272 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18840216 original size:878 final size:870
Alignment explanation
Indices: 18838098--18841364 Score: 4042
Period size: 877 Copynumber: 3.7 Consensus size: 870
18838088 ATGTGCTGCC
*
18838098 GCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGA
1 GCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* *
18838163 AACGAG-CATGGGGACGGGCGGGCGGGCACTTCGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
66 AACGAGCCA----G-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
18838227 GATCGATAGGGTGGTAGGTGGCTTTAGGCAGATCTTCATATTTCTGCATGCCAATGCCATTTTTA
126 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* *
18838292 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCACGGCAAGACGACTCG
191 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * *
18838357 TTTTCTATTTTTCATGATTTTTCGAAA-TTTTTGCTGTTCGAGTTTTTTTAAAATTTGTTCGGAA
256 TTTTCTATTTTTCATGATTTTT-GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* *
18838421 GGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAAGT
320 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATT
*
18838486 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACA
385 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
18838551 CTTTAATGGCTACTGGTAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTC
450 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
18838616 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGT
515 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
18838681 GCGCACACCCCCTGGCCCCCCCGATCATCGAAACCCCAATGCCGCCGGTCAGGCTCTCCGATGAT
580 GCGCACACCCCCCGG-CCCCCCGATCATCGGAACCCTAAT--CGCC-G-CA----CT-C-A-GA-
** *
18838746 GCTCTGGCGATGGCACCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGAG
632 -------CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATG-CTGAGCCCAGCATGTG
* ** * *
18838811 CTGCGGCAA-CC-C-TC-G--G---T--AC--GGTCTG-A-TCT-TAGATT---T-GAAATGAAC
689 CTGCCGCAACCCTCGTCTGTCGACTTAGACTGGGAATGAACTCTGTAGCTTAGCTGGGAATGAAC
* * ** **
18838856 TCCGTATGCCTAAGTC-AGCCAATGAAACGAGCGTGTGGGCGCTTAGTCGGTTAGAGGGGTAGGA
754 TCCGTATGCCTAAGTCAAGCC-ATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGA
* * * * * * * *
18838920 TGTGCATGCCAGGGACCGGCTGGGTCCCCCTCTATGTGCTGCCGATCCTACTACT
818 TGCGTAAGCCGGGGATCGTC-GGGTCCCCCTCTACGTGCTG-CGATCCTGCTACT
* * * * * ** *
18838975 GCAACCCTCGGTCCGCTCCAATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCTAATTGATGA
1 GCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
** * * * *
18839040 AACGAGCGGGCGAGCGGGCGGTTGGGCACAACGCTGGCCAGAGAGACGGGATGCACAAGCTGTGG
66 AACGAGC---C-AGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
18839105 ATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATATTTAT
127 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
*
18839170 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCGT
192 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
18839235 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCTGTTCAAGATTTTTTAAAATTTCTTT-GGAGG
257 TTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTT-TTTCGGAAG
* * *
18839299 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTCTCTTTGCATGCACAAAAAAATTC
321 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTC
* * *
18839364 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATATGAAAAAAATGTCCCCATTTC-GAACA
386 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACA
** *
18839428 CTTTTGTGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
450 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * *
18839493 CAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACTAGCACCCATCGCGCATCATGT
515 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* *
18839558 GCGCACACACCCCCCGACCCCCTCGATCGTCGGAACCCTAAT-G-C-CA-TCAGACGATGGTGCC
580 GCG--CACACCCCCCGGCCCCC-CGATCATCGGAACCCTAATCGCCGCACTCAGACGATGGTGCC
* * *
18839619 CCGGCGAAGAAAAATACGGCACTAGCACATGCTTGAGCCCAGCATGTGCTGCCGTAACCCTCAGT
642 CCGACGAAGAAAAATACGGCACCAGCACATGC-TGAGCCCAGCATGTGCTGCCGCAACCCTC-GT
18839684 CTGATCTGAACTTAGACTGGGAATGAACTCTGTACGCTTAGGCTGGGAATGAACTCCGTATGCCT
705 CTG-TC-G-ACTTAGACTGGGAATGAACTCTGTA-GCTTA-GCTGGGAATGAACTCCGTATGCCT
* * * * **
18839749 AAATCAAGCCACGAAACGAGCGTGCGAGCGCTCAGTCGGCCAAAGGGGCGGGATGCGTAAATCGG
765 AAGTCAAGCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGTAAGCCGG
* * * *
18839814 GGATCGATCGGGTACCCCTCTGCATGCTGTCAATCCTGCTACT
830 GGATCG-TCGGGTCCCCCTCTACGTGCTG-CGATCCTGCTACT
* * * *
18839857 GCAACCCTTGGTCC-AGTTCGATCTTAGACTAGGAATTAACTGCGTATGCCTAAGCCAACCGACG
1 GCAACCCTCGGTCCGA-TCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACG
** *
18839921 AAACGAGCCAGCGGGCGGGCAAGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATC
65 AAACGAGCCAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* **
18839986 GATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGC
130 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* *
18840051 TTGTAAATTCATACAATGATCCCTTAAGCCTTCACGTGAAGTTTCATGGCTAGACGACTCGTTTT
195 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * *
18840116 TTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTTGGAAAGG-G
260 CTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGG-AAGGAG
* * * *
18840180 TTTTGACCCCAAACTTGGCAGACGTGATCCTTGTATTTTTATTGGTATGCATAAAAAAATTCAGC
324 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGC
*
18840245 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTG
389 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
18840310 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGC
454 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
18840375 TTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCATCCATCGCACATCATGTGCGC
519 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
** *
18840440 ACACCCCCCGGCCCCCCAGATCGCCAGAACACCAATGCAACTGGTCAGGTTCTCCGGCGATGCTC
584 ACACCCCCCGGCCCCCC-GATCATCGGAAC-CC--T--AA----TC--G----CC-GC-A--CTC
* * * * * *
18840505 CGGCGATGGTGCCCCAACGAAGAAAAATCCGACACCAGCACATGACCGAGCCCAGCATGTGCTGC
629 AGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATG-CTGAGCCCAGCATGTGCTGC
*
18840570 CGCAACCCTCGGTCTGGTCGATCTTAGA-TAGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
693 CGCAACCCTC-GTCT-GTCGA-CTTAGACT-GGGAATGAACTCTGTA-GCTTAG-CTGGGAATGA
* * * *
18840634 ACTCTGTACGCCTAAGTCAA-CGCATGAAATGAGTGTGCGGGCGCTCAG-CTGGCCAGAGGGGCG
752 ACTCCGTATGCCTAAGTCAAGC-CATGAAACGAGCGTGCGGGCGCTCAGTC-GGCCAGAGGGGCG
* * *
18840697 GGATGC-TCAAGCCGGGGATCGGTTGGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCC
815 GGATGCGT-AAGCCGGGGATC-GTCGGGTCCCCCTCTACGTGCTGC-GATCCTGCTACT
* * * * *
18840755 GTAACCCTCAGTCCGAT-TGATCTTAGACTGGGAATGAAC-CCGTATGCCTAAGCCAACCAACGA
1 GCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* ** * *
18840818 AAC--G--AGCGAGCGGGCGGGCACTTTGTCGGCCAGAGAGACGGGATGCGCAGGCCGTGGATCG
66 AACGAGCCAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * *
18840879 ATAGGCTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGGCATTTTTATGGC
131 ATAGG-GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* * * *
18840944 TTGTAAATTCGTACAAAGGTCCCTTAAGCCTTCACGTGAAGCTTCGTGGCAAGACGACTCGTTTT
195 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * *
18841009 CTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGATT
260 CTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGT
* *
18841074 TTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTGTTGGCATGCACAAAAAAATTCAGC
325 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTATTGGCATGCACAAAAAAATTCAGC
* *
18841139 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTAAGACACTTT
389 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
18841204 AATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCTCGAGA
454 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
18841269 TTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCACACATCATGTGCGC
519 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
18841334 ACACCCCCCGGCCCCCCGATCATCGGAACCC
584 ACACCCCCCGGCCCCCCGATCATCGGAACCC
18841365 CAAAGCCGCC
Statistics
Matches: 2078, Mismatches: 230, Indels: 149
0.85 0.09 0.06
Matches are distributed among these distances:
855 1 0.00
856 58 0.03
857 2 0.00
858 1 0.00
860 2 0.00
861 1 0.00
864 2 0.00
865 2 0.00
866 1 0.00
867 1 0.00
869 1 0.00
871 2 0.00
872 2 0.00
873 4 0.00
874 1 0.00
875 5 0.00
876 34 0.02
877 529 0.25
878 462 0.22
879 32 0.02
881 4 0.00
882 155 0.07
883 5 0.00
885 1 0.00
888 1 0.00
892 60 0.03
893 207 0.10
894 230 0.11
895 1 0.00
896 26 0.01
897 26 0.01
898 143 0.07
899 74 0.04
900 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (870 bp):
GCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
AACGAGCCAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTT
TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
ACCCCCCGGCCCCCCGATCATCGGAACCCTAATCGCCGCACTCAGACGATGGTGCCCCGACGAAG
AAAAATACGGCACCAGCACATGCTGAGCCCAGCATGTGCTGCCGCAACCCTCGTCTGTCGACTTA
GACTGGGAATGAACTCTGTAGCTTAGCTGGGAATGAACTCCGTATGCCTAAGTCAAGCCATGAAA
CGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGTCGGGTCCCC
CTCTACGTGCTGCGATCCTGCTACT
Found at i:18842249 original size:26 final size:26
Alignment explanation
Indices: 18842205--18842257 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18842195 CTGGACCGAT
*
18842205 CTTAGACTGGCAATTAACTTCGTATG
1 CTTAGACTGGCAATGAACTTCGTATG
* *
18842231 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGCAATGAACTTCGTATG
18842257 C
1 C
18842258 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTTCGTATG
Found at i:18843815 original size:26 final size:26
Alignment explanation
Indices: 18843778--18843830 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18843768 CCGGTCCGAT
**
18843778 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
18843804 CTTAGA-TAGGGAATGAACGCCGTATG
1 CTTAGACT-GGGAATGAACGCCGTATG
18843830 C
1 C
18843831 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCGTATG
Found at i:18844707 original size:26 final size:26
Alignment explanation
Indices: 18844671--18844723 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18844661 CTGATCCAAT
*
18844671 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18844697 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18844723 C
1 C
18844724 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18845561 original size:26 final size:26
Alignment explanation
Indices: 18845525--18845575 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18845515 CTAGTCCAAT
18845525 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
*
18845551 CTTAGACTGGGAATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
18845576 AACTAAGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:18847669 original size:868 final size:867
Alignment explanation
Indices: 18846365--18849842 Score: 4364
Period size: 868 Copynumber: 3.9 Consensus size: 867
18846355 AAAAAAAATA
* * * * * * * * *
18846365 CGTGCAGGCGCTCAGTCGGCCAGAGGGGCGGGATACGCATACTGGGGAT-TGATCGGGTCCTCCT
1 CGTGCGGGCGCTCAGCCGGCCAGAGGGG-TGGATGCGCATGCCGGGGATCGGCT-GGGTCCCCCT
* * * * * **
18846429 CTACGTGCTGTCGATCCTGCTGCCGTAACCCTCGGCCCAATCCAATCTTAGACTGGGAATGAACT
64 CTGCGTGCTGCCGATCCTACTGCCATAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACT
* ** * * *
18846494 CCGTATGCCTAAGCTAAATGACGAAATGAACGGGCGGGCGGGCATTACGTCGGCCAGAGAGACGG
129 CCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGACGGGCACTACGTCGGCCAGAGAGACGG
* *
18846559 GATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTATATTTTTGCGTGC
194 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTATATTTCTGCGTGC
** *
18846624 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGTATTCACATGAAGTTTCAT
259 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * **
18846689 GGCAAGACGACTCATTTTCTATTTTTCATGATTATCAAAACTTTTTGGGGTTC-AGGATTTTTTA
324 GGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA-GATTTTTTA
** * * ** * *
18846753 AAATTTTTTCAGAATGAGTTTTATCTCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCA
388 AAATTTTTTTGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
18846818 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
453 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
18846883 CCCCATTTTAGACACTTTAATAGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAAG
518 CCCCATTTTAGACACTTTAATGGCCACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * *
18846948 GGGTGTGAGGTCTCGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
583 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* *
18847013 ATCGGACATCATGTGCGTACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTC-GGTC
648 ATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCG-CAGGTC
* * * * * * *
18847077 AAGTTCTCCGACAATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCCCATGCT
711 AGGTTCTCCGGCGATGCTCC-GTGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCC
*
18847142 CGAGCCCAGCATGTGCTACCGCAACC-CTCGGTCCAGTCTGATCTTAGACTAGG-AATGAACTCT
775 CGAGCCCAGCATGTGCTGCCGCAACCGCTCGGTCCAGTCTGATCTTAGACTAGGAAATGAACTCT
*
18847205 GTATGCCTAAGTCAACCCACGAAATGAG
840 GTATGCCTAAGTCAACCCACGAAACGAG
*** * ** * *
18847233 CGTGTACGTGCTCAGCCGGTGAAAGGGGTGGAATGCGCATGCCGGGGATTGGCTGGGTCCCCCTC
1 CGTGCGGGCGCTCAGCCGGCCAGAGGGGTGG-ATGCGCATGCCGGGGATCGGCTGGGTCCCCCTC
* * * *
18847298 TGCGTGCTACCGATCCTACTACCATAACCCTCGGTCTGGTCCAATCTTAGATTGGGAATGAACTC
65 TGCGTGCTGCCGATCCTACTGCCATAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTC
* * * *
18847363 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGTACTACATCGGCCAGAGAGATGGG
130 CGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGACGGGCACTACGTCGGCCAGAGAGACGGG
* * * * *
18847428 ATGCGCAAGGCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACATGC
195 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-ATATTTCTGCGTGC
*
18847493 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCAT
259 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
** *
18847558 GGCAAGACGACTCATTTTC-ATTTTTCACGATTTTTGAAACTTTTTACGGCTCGAGATTTTTTAA
324 GGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAA
18847622 AATTTTTTTGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
389 AATTTTTTTGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * * *
18847687 GCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGACAAAAGTGTT
454 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
18847752 CCCATTTCAGACACTTTAATGGCCACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
519 CCCATTTTAGACACTTTAATGGCCACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
18847817 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
584 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
** * * * *
18847882 TCAG-ACATCACATGCACACACCCCCCGGCCCCTCGATCGTCGAAACCCCAATGCCGTC-GGTCA
649 TC-GCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCG-CAGGTCA
* * * *
18847945 GGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGGCAAAGAAAAATACGACACCAGCAAATGCCC
712 GGTTCTCCGGCGATGCTCC-GTGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCC
* * *
18848010 AAGCCCAGTATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCTGTA
776 GAGCCCAGCATGTGCTGCCGCAA--C-CGCTC-GGT-C---C-----------A-G---TCTG-A
18848075 TGCTTAGACT-GGAAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAG
817 T-CTTAGACTAGGAAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAG
* * * *
18848126 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCTGGATGCAG-AAGCCGGGGATCGACCGGGTCCCTCT
1 CGTGCGGGCGCTCAGCCGGCCAGAGGGG-TGGATGC-GCATGCCGGGGATCGGCTGGGTCCCCCT
*
18848190 CTGCGTGCTGCCGATCCTACTGTCGCAT--CCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAA
64 CTGCGTGCTGCCGATCCTACTG-C-CATAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAA
* * * * *
18848253 CTCCGCATGCTTAAGCCAACCGACGAAACGAGCGGGCTGGAAGGCGGGCGGGCACTACGCCGGCT
127 CTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGC-GG-A------CGGGCACTACGTCGGCC
* *
18848318 AGAGAGACAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
184 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-ATA
* * *
18848383 TTTCTGTGTGCCAATACCATATTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
248 TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * ** * *
18848448 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTG
313 TGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCG
* *
18848513 AGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGCCCCAAACTTAGTAGACGTCATCCTTGTATT
378 AGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* *
18848578 TTTTTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
443 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
18848643 AAAAAAGTGTCCCCATTTTAGACACTTTAATGGCCACTGGTAGCAAACCTGTAAAATCTCAAATG
508 AAAAAAGTGTCCCCATTTTAGACACTTTAATGGCCACTGGCAACAAACCTGTAAAATCTCAAATG
*
18848708 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGT
573 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
18848773 ACCAGCACCCATCGCACATCTTGTGTGCAC-CCCCCCGGCCCCCCGATCGCCAGAACCCCAATGT
638 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGC
* * *
18848837 TGCAGGTCAGGTTCTCTGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGACACCAG
703 CGCAGGTCAGGTTCTCCGGCGATGCTCCG-TGATGGTGCCCCGACGAAGAAAAATACGACACCAG
* * *
18848902 CACATGCCCGAGCCTAGCATGTGCTGCCGTAACC-CTCGGTCCAGTCCGATCTTAGACTGAGAAT
767 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCGCTCGGTCCAGTCTGATCTTAGACT-AG---
* *
18848966 GAACTCCACATGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAG
828 G-A----A-ATG---A-A-C-----T---CT--GTATGCCTAAGTCAACCCACGAAACGAG
* * * * *
18849027 TGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCATGTCGAGGATCGG-TCGGGTCCCCCT
1 CGTGCGGGCGCTCAGCCGGCCAGAGGGG-TGGATGCGCATGCCGGGGATCGGCT-GGGTCCCCCT
* * * *** * * ** * *
18849091 CTGTGTGCTGTCGACCCTACTGCTGCAACCCTCGATCTGGTCTGATGTTAGACTGGTAATGAACT
64 CTGCGTGCTGCCGATCCTACTGCCATAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACT
* * *
18849156 CCGTATGCCTAAGCCAACCGACGAAATGAACGGGTAGG-CGGGCATTACGTCGGCCAGAGAGACG
129 CCGTATGCCTAAGCCAACCGACGAAACGAACGGG-CGGACGGGCACTACGTCGGCCAGAGAGACG
*
18849220 GGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTATATTTCTGCGTG
193 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTATATTTCTGCGTG
18849285 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
258 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * *
18849350 TGGCTAGACGACTCATTTTCTATTTTCCACGATTTTCAAAACTTTTTACAGTTCGGGATTTTTTA
323 TGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTA
* * *
18849415 AAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTTTTGGCA
388 AAATTTTTTTGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
*
18849480 TGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
453 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * * * * *
18849545 CTCCATTTTAGACACTTTAATTGCTACAGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
518 CCCCATTTTAGACACTTTAATGGCCACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGG
18849610 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCC
583 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * *
18849674 ATCGCACATCATGTGTGCACACCCCCCCGGTGCCCTCGATTGCCGGAACCCCAATGCCGCAGGTC
648 ATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCAGGTC
* * * *
18849739 AGGTTTCTCC-G-G--G---CG-GATGGTGCCCCG-GGAA-AAAAATACGGCACTAGCACATGCT
711 AGG-TTCTCCGGCGATGCTCCGTGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCC
* * *
18849794 CGAGCCCAGCATGTGCTGTCGCAAACCGATCGGTCCGGTCTGATCTTAG
775 CGAGCCCAGCATGTGCTGCCGC-AACCGCTCGGTCCAGTCTGATCTTAG
18849843 CTGGGAATGA
Statistics
Matches: 2278, Mismatches: 247, Indels: 152
0.85 0.09 0.06
Matches are distributed among these distances:
867 107 0.05
868 500 0.22
869 97 0.04
870 1 0.00
871 2 0.00
872 3 0.00
873 1 0.00
875 8 0.00
876 3 0.00
877 4 0.00
880 2 0.00
881 2 0.00
884 39 0.02
885 8 0.00
886 33 0.01
887 1 0.00
888 3 0.00
889 1 0.00
890 1 0.00
891 56 0.02
892 350 0.15
893 259 0.11
894 39 0.02
895 10 0.00
896 4 0.00
897 2 0.00
898 1 0.00
899 3 0.00
900 4 0.00
901 433 0.19
902 301 0.13
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (867 bp):
CGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGATGCGCATGCCGGGGATCGGCTGGGTCCCCCTCT
GCGTGCTGCCGATCCTACTGCCATAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCC
GTATGCCTAAGCCAACCGACGAAACGAACGGGCGGACGGGCACTACGTCGGCCAGAGAGACGGGA
TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTATATTTCTGCGTGCCA
ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
CAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAA
TTTTTTTGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
CATTTTAGACACTTTAATGGCCACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
GCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCAGGTCAGGTT
CTCCGGCGATGCTCCGTGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCC
CAGCATGTGCTGCCGCAACCGCTCGGTCCAGTCTGATCTTAGACTAGGAAATGAACTCTGTATGC
CTAAGTCAACCCACGAAACGAG
Found at i:18848080 original size:26 final size:26
Alignment explanation
Indices: 18848051--18848103 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18848041 CTGGTCCGAT
* *
18848051 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
18848077 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
18848103 C
1 C
18848104 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCTGTATG
Found at i:18849034 original size:901 final size:892
Alignment explanation
Indices: 18847184--18849943 Score: 3847
Period size: 901 Copynumber: 3.1 Consensus size: 892
18847174 CCAGTCTGAT
* * * *** * *
18847184 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGTACGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
** * * * *
18847249 CGGTGAAAGGGG-TGGAATGCGCATGCCGGGGATTGGCTGGGTCCCCCTCTGCGTGCTACCGATC
66 CGGCCAGAGGGGCTGG-ATGCGCATGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* * *
18847313 CTACTAC-CATAACCCTCGGTCTGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCC
130 CTACTGCGCAT--CCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
18847377 AACCGACGAAACGAGCGGGC-GGA--CGGGTACTACATCGGCCAGAGAGATGGGATGCGCAAGGC
193 AACCGACGAAACGAGCGGGCTGGAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
18847439 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACATGCCAATGCCATTT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
*
18847504 TTATGGCTTGTAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGACGAC
323 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
*
18847569 TCATTTTC-ATTTTTCACGATTTTTGAAACTTTTTACGGCTCGAGATTTTTTAAAATTTTTTTGG
388 TCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGG
* *
18847633 AAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAA
453 AAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
* * * *
18847698 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGACAAAAGTGTTCCCATTTCAGA
518 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
*
18847763 CACTTTAATGGCCACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
583 CACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
18847828 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAG-ACATCA
648 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCACATCA
** ** * * *
18847892 CATGCACACACCCCCCGGCCCCTCGATCGTCGAAACCCCAATGCCGTC-GGTCAGGTTCTCCGGT
712 TGTGTGCAC-CCCCCCGGCCCCTCGATCGCCG-AACCCCAATGCCG-CAGGTCAGGTTCTCTGGC
* * * *
18847956 GATGCTCCGGTGATGGTGCCCCGGCAAAGAAAAATACGACACCAGCAAATGCCCAAGCCCAGTAT
774 GATGCTCC-GTGATGGTGCCCC-GCGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCAT
* * * ***
18848021 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCTGTATG
837 GTGCTGCCGAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCACATG
* * *
18848077 CTTAGACTGGAAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * *
18848142 CGGCCAGAGGGGCTGGATGCAG-AAGCCGGGGATCGACCGGGTCCCTCTCTGCGTGCTGCCGATC
66 CGGCCAGAGGGGCTGGATGC-GCATGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* * *
18848206 CTACTGTCGCATCCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGCATGCTTAAGCCA
130 CTACTG-CGCATCCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
18848271 ACCGACGAAACGAGCGGGCTGGAAGGCGGGCGGGCACTACGCCGGCTAGAGAGACAGGATGTGCA
194 ACCGACGAAACGAGCGGGCTGG-A----GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* *
18848336 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATACC
254 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
*
18848401 ATATTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
319 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
18848466 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTT
384 CGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* *
18848531 TTGGAAGGAATTTTGGCCCCAAACTTAGTAGACGTCATCCTTGTATTTTTTTTGGCATGCACAAA
449 TTGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
*
18848596 AAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
514 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
18848661 TAGACACTTTAATGGCCACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
579 TAGACACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
18848726 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATCGCACA
644 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * **
18848791 TCTTGTGTGCACCCCCCCGGCCCCCCGATCGCCAGAACCCCAATGTTGCAGGTCAGGTTCTCTGG
709 TCATGTGTGCACCCCCCCGGCCCCTCGATCGCC-GAACCCCAATGCCGCAGGTCAGGTTCTCTGG
* *
18848856 CGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCTAGCA
773 CGATGCTCCG-TGATGGTGCCCCG-CGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCA
* * *
18848921 TGTGCTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGAGAATGAACTCCACATG
836 TGTGCTGCCGAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCACATG
* * * *
18848978 CTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGTGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * * * * *
18849043 CGGCCAGAGGGGCGGGATGCGCATGTCGAGGATCGGTCGGGTCCCCCTCTGTGTGCTGTCGACCC
66 CGGCCAGAGGGGCTGGATGCGCATGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
18849108 TACTGCTGCAACCCTCGATCTGGTCTGATGTTAGACTGGTAATGAACTCCGTATGCCTAAGCCAA
131 TACTGC-GCATCCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18849173 CCGACGAAATGAACGGG-T--AGGCGGGCATTACGTCGGCCAGAGAGACGGGATGCACAAGCCGT
195 CCGACGAAACGAGCGGGCTGGAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
18849235 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-ATATTTCTGCGTGCCAATGCCATTTTT
260 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
*
18849299 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCTAGACGACTC
325 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* ** * *
18849364 ATTTTCTATTTTCCACGATTTTCAAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTTGGAA
390 ATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAA
* *
18849429 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTTTTGGCATGCACAAAAAAATT
455 GGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
* *
18849494 CAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTTAGACA
520 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
* * * *
18849559 CTTTAATTGCTACAGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
585 CTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
18849624 AAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
650 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
18849688 GTGCACACCCCCCCGGTGCCCTCGATTGCCGGAACCCCAATGCCGCAGGTCAGGTT-TCT-CCG-
715 GTG--CACCCCCCCGG-CCCCTCGATCGCC-GAACCCCAATGCCGCAGGTCAGGTTCTCTGGCGA
* * * * *
18849750 -G--GCG-GATGGTGCCCCGGGAA-AAAAATACGGCACTAGCACATGCTCGAGCCCAGCATGTGC
776 TGCTCCGTGATGGTGCCCCGCGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * *
18849810 TGTCGCAAACCGATCGGTCCGGTCTGATCTTAG-CTGGGAATGAATTTCATCATG
841 TGCCG-AAACC-CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCA-CATG
* * * * *
18849864 CCCTAGAATGGGGAATGAACTCCATATGCCTAAGTCAACCGCACGAAACGAGCGTGTGGGTGCTC
1 -CTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACC-CACGAAACGAGCGTGCGGGCGCTC
*
18849929 AACCGACCAGAGGGG
63 AACCGGCCAGAGGGG
18849944 AGGAATGCGC
Statistics
Matches: 1666, Mismatches: 172, Indels: 62
0.88 0.09 0.03
Matches are distributed among these distances:
884 39 0.02
885 20 0.01
886 34 0.02
887 5 0.00
888 31 0.02
889 33 0.02
890 1 0.00
891 47 0.03
892 347 0.21
893 267 0.16
894 40 0.02
895 4 0.00
897 1 0.00
900 6 0.00
901 489 0.29
902 302 0.18
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CGGCCAGAGGGGCTGGATGCGCATGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
TACTGCGCATCCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCTGGAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA
TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAG
GAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACAC
TTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
TGCACCCCCCCGGCCCCTCGATCGCCGAACCCCAATGCCGCAGGTCAGGTTCTCTGGCGATGCTC
CGTGATGGTGCCCCGCGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
AAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCACATG
Found at i:18850927 original size:26 final size:26
Alignment explanation
Indices: 18850891--18850943 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18850881 CTAGTTTGAT
*
18850891 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
*
18850917 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
18850943 C
1 C
18850944 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:18854049 original size:26 final size:26
Alignment explanation
Indices: 18854020--18854072 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18854010 GTTGACTGAG
18854020 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18854046 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18854072 G
1 G
18854073 ATCAGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18854946 original size:26 final size:26
Alignment explanation
Indices: 18854910--18854962 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18854900 GTTGACTTAG
18854910 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* * *
18854936 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
18854962 G
1 G
18854963 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:18855615 original size:28 final size:29
Alignment explanation
Indices: 18855575--18855630 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 29
18855565 TTGACTTAGG
*
18855575 CATACGGTGTTCA-TTCCCAG-TCTAAGC
1 CATACGGAGTTCATTTCCCAGTTCTAAGC
18855602 CATACCGGAGTTCATTTCCCAGTTCTAAG
1 CATA-CGGAGTTCATTTCCCAGTTCTAAG
18855631 ATCGACCAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 4 0.16
28 8 0.32
29 7 0.28
30 6 0.24
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (29 bp):
CATACGGAGTTCATTTCCCAGTTCTAAGC
Found at i:18856500 original size:26 final size:26
Alignment explanation
Indices: 18856471--18856523 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18856461 GTTGACTTAG
* *
18856471 GCATACGGAGTTTATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAATCTAA
*
18856497 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCACAATCTAA
18856523 G
1 G
18856524 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAATCTAA
Found at i:18856649 original size:185 final size:185
Alignment explanation
Indices: 18856312--18856730 Score: 572
Period size: 185 Copynumber: 2.3 Consensus size: 185
18856302 GTTGGCTTAG
* *
18856312 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACC-GAATCGAGGGTTGCGGTAGAAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ATCGAGGGTTGCGATAGAAGGATCGGC
** * * *
18856376 AGCACGCAGAGGGGGACCCGATCGATCCCCGGTTTGCACAACCCGCCCCTCTGGTCGGTTGAGTG
65 AGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCACAACCCGCCCCTCTGGCCGGCTGAGCG
* * * * *
18856441 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATTCACAGTCTAA
130 CCCGCAAGCTCGATCCATGGGTTGACTTAGGCATACGAAGTTCATTCACAGTCTAA
* * * *
18856497 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGATCGAGGGTTGCGATAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGATAGAAGGATCGGCA
* * * *
18856562 GCACGTAGAGGGGGACTCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
66 GCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCACAACCCGCCCCTCTGGCCGGCTGAGCGC
* * *
18856627 CCGTAAGCTCGATCCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
131 CCGCAAGCTCGATCCATGGGTTGACTTAGGCATACGAAGTTCATTCACAGTCTAA
* * *
18856682 GCATACGAAGTTCATTCTCAGTCTAAGATCAGACCAGA-CTGAGGGTTGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC-GAGGGTTGC
18856731 AACAGCACAT
Statistics
Matches: 204, Mismatches: 28, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
184 1 0.00
185 202 0.99
186 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.22
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGATAGAAGGATCGGCA
GCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCACAACCCGCCCCTCTGGCCGGCTGAGCGC
CCGCAAGCTCGATCCATGGGTTGACTTAGGCATACGAAGTTCATTCACAGTCTAA
Found at i:18856692 original size:26 final size:26
Alignment explanation
Indices: 18856656--18856708 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18856646 GTTGACTTAG
18856656 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
18856682 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18856708 G
1 G
18856709 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18858489 original size:26 final size:26
Alignment explanation
Indices: 18858449--18858501 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18858439 GTTGACTTAG
18858449 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
*
18858475 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
18858501 G
1 G
18858502 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:18859380 original size:26 final size:26
Alignment explanation
Indices: 18859344--18859394 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18859334 TGACTTAGGC
18859344 ATACAGAGTTCATTCCAAGTCTAAGT
1 ATACAGAGTTCATTCCAAGTCTAAGT
* *
18859370 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCAAGTCTAAG
18859395 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCAAGTCTAAGT
Found at i:18861158 original size:26 final size:26
Alignment explanation
Indices: 18861122--18861174 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18861112 ATTGACTTAG
18861122 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18861148 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18861174 G
1 G
18861175 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18861556 original size:896 final size:894
Alignment explanation
Indices: 18856497--18863251 Score: 8559
Period size: 894 Copynumber: 7.6 Consensus size: 894
18856487 CACAGTCTAA
* ** * * * *
18856497 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGATCGAGGGTTGCGATAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * *
18856562 GCACGTAGAGGGGGACTCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
66 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * *
18856627 CCGTAAGCTCGA-TCCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAA
131 CCGCACGCTC-ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * **
18856691 GTTCATTCTCAGTCTAAGATCAGACCAGACTGAGGGTTGCAACAGCACATGCTGGGCTCAGGCAT
195 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCAT
* * ** * * ** * *
18856756 GTGCTGGTGTCGTATTTTTCTTCACCGAGGCACCATCGTCAGAGCATCGTCGGAGAATCTTACCG
260 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCG
* * *
18856821 GCGGCATTGGGGTTCCGGCGAT--------CGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
325 ACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
18856878 GGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCCCGAGAACTCACACCCCCTTATA
390 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * * *
18856942 GAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCAATAAAGTGTCTAAAATGGGGATATTTT
455 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
18857007 TTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTGTTAGCTGAAATTTTTTGTGCATGCCAAC
520 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
** * *
18857072 AAAAATACAAGGATCACGTCTAATAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAAAAA
585 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA
* * *
18857137 TCCTGAACCGCAAAAAGTTTTGAAAATCAT-TAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
650 TCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
18857201 TCACGTGAA-GCTTAA-GGACCA-TGTATGAATTTACAAGCCATAAAAATGGCATT-GCACATAG
715 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
* * *
18857262 AAATATGAAGAT-TCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAACCCGTCTC
780 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTC
* *
18857326 TCTAGCCGGCGTAGTGCCCGCTGGCCTGCCCGCCCACCTGCCGCCCGTTCGTTTCGTTAGTTGCC
845 TCTAGCCGGCGTAGTG-CC-C-GGCC-GCCCG-----CT--CG---TTTCG--TCG---GTTGGC
18857391 TTAG
891 TTAG
* ** * * ** **
18857395 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGTGGTAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * ** *
18857460 GCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCAACTGAGTGC
66 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * *
18857525 CCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTA-TCTAAACATATGGA
131 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCATACGGA
* *
18857589 GTTCATTCCCAGTCTAAGATCGGACC-GAACCGAGGGTTACGACAGCACATGCTGGGCTCAGCCA
195 GTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCA
* * *
18857653 TGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCCGAGAACCTGA-C
259 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
* *
18857717 AAGCGGCATTGGGGTTCCGACGATCGGGGGCGACGGGGGGGTGTGCGCACATGATGTGCGATGGG
324 GA-CGGCATTGGGGTTCCGACGATCGGGGG-G-CCGGGGGGTGTGCGCACATGATGTGCGATGGG
*
18857782 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
386 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
18857847 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGTAATGGGGACA
451 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * * *
18857912 CTTTTTTCATATGGTCACAAAATCTTGTACACTGCGAGTTTTTAGTTGAATTGTTTTATGCATGC
516 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * *
18857977 CAACAAAAATACAAGGATCATGTCTACCAATTTTGGGGCCAAAACTACTTCCAAAAAAATTTTAA
581 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
* * * * *
18858042 AAAATTCAGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAATCGTCTTGCCAGGA
646 AAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
18858107 AACTTTACGTGAAGGCTTAAGGGACCATTGAATGAATTTACAAG-TATAAAAATGGCATTGGCAC
711 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
18858171 GTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTATGCATCCCG
776 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCG
* * * * *
18858236 TCTCTCTAGCTGGCATAGTGCCCGCCCGTCCGCTCGTTTCGTCAGTTGGCTTAG
841 TCTCTCTAGCCGGCGTAGTGCCCGGCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* ** * *
18858290 GCATACGGAGTTCATTCCCAGTCTAGGATC-GAACCAGACCGAGTTTTGCTG-TAGTAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGC-GACAGCAGGATCGA
* * * * ** * *
18858353 TAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGGATCCCGCCCCTCTGGTAGGTTGGGC
64 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * *
18858418 ACCCCCATGCTCATTTGGTGGGTTGACTTAGGCATACGGAGATCATTCCCAGTCTAAGCATACGG
129 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * *
18858483 AGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCACATGCTTGGCTCGGGCA
194 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCA
* * * *
18858548 TGTGCTGGCGCCACATTTTTCTTCGTCGGGCCACCATCGTCGGAGCATCACCAGAGAACCTGACC
259 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
*
18858613 GACGGCATTGGGGTTCCGACGATCGGGGGGGCCTGGGGGTGTGCGCACATGATGTGCGATGGGTG
324 GACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
18858678 CTGATGCTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
388 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
18858743 AAGAGCATTTGACATTTTACAAGTTTGCCGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACT
453 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
18858808 TTTTTCAAATGGTCACAAAATCGTGTACACTTCGAGTTTTTAGCTGAA--TTTTTGAAGCATGCC
518 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG-TGCATGCC
** *
18858871 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGAAAAAATCCTTCCGAAAAAGTTTTAAA
582 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAA
* * * ** * * *
18858936 AAATCTCGAACCTCAAAAAGTCTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCACGAC
647 AAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
18859001 ACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
712 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * *
18859066 TAGAAATATGAAGATGTGCCTAATCCCACCAACCACCCTATCGATCCACGGCTTACGCATCCCGC
777 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGT
* * * ** *
18859131 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTTATCGGTTGGCTTAC
842 CTCTCTAGCCGGCGTAGTGCCCGGCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * *
18859184 GCATACGGAGTTCATTCCCAATTTAAGATCAGACCGGATCAAGGGTTAC-AGCAACA-GATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA-CAGCAGGATCGAC
* * ** *
18859247 AGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCTTCTGGCCGATTGAGCA
65 AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * * * *
18859312 CCCGCATGCTCGTTTCGTGGATTGACTTAGGCATACAGAGTTCATTCCAAGTCTAAGTATACGGA
130 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * *
18859377 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGACAGCACATGCTGGGCTCGGGCAT
195 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCAT
* * * * * * * *
18859442 GTGTTGGTGTCGCATTTTTCTTTGTC-GGGCACCATCG-CTAGAGCATCGCCAGATAACTTGACC
260 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCACCGGAGAACCTGACC
* *
18859505 -AGCGGCATT-GGGTTCTCGATGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGC-AGTGGG
324 GA-CGGCATTGGGGTTC-CGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA-TGGG
* * *
18859567 TGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAACCCCT
386 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * * *
18859632 TAAAGAGCATTTGAGAATTTACAGGTTTGCTGTCAGTAGCCTTTAAAGTGTCCGAAATTGGGACA
451 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
** *
18859697 CTTTTTTCAAATGGTCGTAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGC
516 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * * *
18859762 CAAAAAAAATACAAGGATCATGTATACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTTA
581 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
* *
18859827 AAAATCCCGAACCGTAAAAAGTTTT-AAAATTTGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
646 AAAATCCCGAACCGCAAAAAGTTTTGAAAA-TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
18859891 AAACTTCACATGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
710 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
18859956 CGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCATGGCTTGCACATCCC
775 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCC
* *
18860021 ATCTCTCTAGCCGGCGTAGTGCCCACCCGTTCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAG
840 GTCTCTCTAGCCGGCGTAGTG----CCCG---G-CCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * ** *
18860084 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGTAGCAGAATC-AGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGA-C
* * ** * * *
18860148 AGCACGCAGAGCGGGACCCGATCGATTCCCATCTTGCACA-CCCTGCCCCTCTGGCCGGTTAAGC
65 AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCC-GCCCCTCTGGCCGGCTGAGC
** * * *
18860212 GCCTACACG-TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCGTACGT
129 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * *
18860276 AGTTCATTACCAGTTTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCTGGCA
194 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCA
* *
18860341 TGTGCTGGTGCCGCATTTTT-AT--T-------CC--C--CGAAGCATCACCGGAGAACCTGACC
259 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
* * * *
18860392 AACGGCATTAGAGTTCCGACGATCGGCGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTG
324 GACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
18860457 CTGGTACTTGGCCCTTATATT-GCCCCCTATCCCACATCAAACCTTGAGAACTCACACCCCCTTA
388 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
18860521 AAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATAGGGACACT
453 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
18860586 TTTTTCAAATGGTCACAAAATCCTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
518 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
**
18860651 A-ATAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTTGAAAAAATTTTAAA
583 ACA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTT-AA
* * * *
18860715 AAAATCCCAAACCGCAAAAATTTTTTAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
646 AAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * **
18860780 AACTTCACGTGAAGGCATAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGTATTCACAC
711 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
** * *
18860845 ACAGAAATATGAAGATGCGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTACGCATCCCG
776 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCG
* *
18860910 TCTCTCTAGTCGGCGTAGTG-CCGGCCGCCCGCTCGTTTCATCGGTTGGCTTAG
841 TCTCTCTAGCCGGCGTAGTGCCCGGCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* *** * * *
18860963 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTGCGACAGCAAGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * *
18861028 GCATGCGGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGTCGGTTGAGCGC
66 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
18861093 CCGCACGCTCATTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
131 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * *
18861158 TTCATTCCCAGTCTAAGATCGGATCAGATCAAGGGTTACAGCAGCACATGCTGGGCTCAGGCATG
196 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATG
* * * * * * * *
18861223 TGCTAGTGTCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCGTCACCAGAGAACTTGACCGG
261 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGA
* * * *
18861288 CGGAATTGGGGTTCTGACGATCGGGGGGCCGGGGGAGGTGTGCGTACATGATATGCGATGGGTGC
326 CGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGG-GGTGTGCGCACATGATGTGCGATGGGTGC
* *
18861353 TGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
389 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
18861418 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTT
454 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * **
18861483 TTTTCAAATGGTCACAAAATCTCGTACACTTCGAGTTTTGAGCTGAATTTTTTTGTGTGTGCCAA
519 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * * **
18861548 TAAAAATACAAGGATCACCTCTACCAAGTTT-GGTCTAAAAACACCTTTTGAAAAAATTTTAAAA
584 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA-TCCTTCCGAAAAAATTTTAAAA
** ** * *
18861612 AATCCCGAACCATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAGCGAGTCGTCTTGCCATGAAA
648 AATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
18861677 CTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
713 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
* *
18861742 AGAAATATGAAGATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
778 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTC
* * * * * *
18861807 TCTCTGGCCGGCGTAATGCCC-GCCGGTCCGTTCATTTCGTCGGTTGGCTTTG
843 TCTCTAGCCGGCGTAGTGCCCGGCC-GCCCGCTCGTTTCGTCGGTTGGCTTAG
* * *
18861859 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCTACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * * * * * *
18861924 GCACACAGAGAGGGACCTGGTCGATCCCCAGCTTACGCGTCCTGCCCTTCTGGTCGACTGAGCGC
66 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * * *
18861989 CTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGTATACAGAG
131 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * *
18862054 TTCATTCCCAGTCTAAGATCGAACTAAACCGAGGGTTGCGGCAGCACATGTTGGGCTCAGGCATG
196 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATG
* * * *
18862119 TGCTGGTGTCACATTTTTCTTTGCTC-GGGCACCATCATCGGAGCATCACCGGAGAACCTGACCG
261 TGCTGGTGCCGCATTTTTCTTCG-TCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCG
** * * * *
18862183 ACGGCATTGGCATTCTGGCGATCGGGGGGTCGGGGGGTGTACGCACATGATGTGCGATGGGTGCT
325 ACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
18862248 AGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
390 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
18862313 GAGCATTTGAGATTTTACAGGTTTGTTGCCAGTGGCCATTAAAGTGTCTTAAATGGTGACACTTT
455 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
18862378 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTTTGCATGCCAAT
520 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
18862443 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAA
585 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA
*
18862508 TCCCGAACCGCAAAAAGTATTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
650 TCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
18862573 TCATGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
715 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
** * * * * *
18862638 AAATATGAAGATGTGCCTGAAGTCCACCTACTACTCTATCGATCCACGGCTTTCGTATCCCATCT
780 AAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCT
* * * * * *
18862703 CTCTGGTCGGCATAGTGCCCGCCCGCTTGCCCGCTCGTTTTGTCAGTTGGCTTAG
844 CTCTAGCCGGCGTAGTGCCCG---GC-CGCCCGCTCGTTTCGTCGGTTGGCTTAG
** * * * * *
18862758 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCAAGGTTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
* ** * * * *
18862823 GTACGCAGAGGGGGACTAGGTTGATCCCCGGCTTGTGCATCCCGCCCTTCTGGCCGGCTGAGCGC
66 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
18862888 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAG
131 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
** * ** * *
18862953 TTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTACGGTGGCACATG-TTGGCTAAGGCATG
196 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATG
* * * *
18863017 TGCTGGTGCCACATTTTTCTTCGTCGGAGCACCATCG-CTGGAGCATCATCGGAGAACCTGACTG
261 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCACCGGAGAACCTGACCG
* * * * * * *
18863081 ACGGTATTGGGGTTTCTG-TGATCAGGGGGGTCGGCAGGGGTGTACGCGCATGATGTACGATGGG
325 ACGGCATTGGGG-TTCCGACGATC-GGGGGGCCGG--GGGGTGTGCGCACATGATGTGCGATGGG
* * *
18863145 TGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTAACACCCCCT
386 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
18863210 TAAAGTGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
451 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
18863252 ACAAAAATAC
Statistics
Matches: 5106, Mismatches: 655, Indels: 189
0.86 0.11 0.03
Matches are distributed among these distances:
879 135 0.03
880 128 0.03
881 1 0.00
883 4 0.00
886 1 0.00
887 244 0.05
888 251 0.05
889 6 0.00
890 3 0.00
891 209 0.04
892 298 0.06
893 369 0.07
894 797 0.16
895 625 0.12
896 545 0.11
897 9 0.00
898 379 0.07
899 248 0.05
900 201 0.04
901 185 0.04
903 2 0.00
905 2 0.00
908 52 0.01
909 243 0.05
910 43 0.01
911 9 0.00
912 21 0.00
913 35 0.01
914 61 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATG
TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGA
CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAT
CCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCT
CTAGCCGGCGTAGTGCCCGGCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:18862054 original size:26 final size:26
Alignment explanation
Indices: 18862020--18862070 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18862010 TGACTTAGGC
* *
18862020 ATACGGAGTTCATTCCTAGTCTAAGT
1 ATACAGAGTTCATTCCCAGTCTAAGT
18862046 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
18862071 ATCGAACTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:18862954 original size:26 final size:26
Alignment explanation
Indices: 18862917--18862969 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18862907 GTTGACTTAG
*
18862917 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18862943 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18862969 G
1 G
18862970 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18865110 original size:874 final size:857
Alignment explanation
Indices: 18863757--18867088 Score: 2649
Period size: 874 Copynumber: 3.8 Consensus size: 857
18863747 CACGGTCTAA
* * * * * *
18863757 GCATACGGAGTCCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTATGGCAGCACATGTTGGG
1 GCATACGGAGTCCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCTAGA
* * * *
18863822 CTCGGGCATGTGCTGGTACTGTATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCCGAAGA
66 CTCAGGCATGTGCTGGTACCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCACCGAAGA
*
18863887 ACCTGACCGACGGCATTGGGATTCCGACGATCGAGGGGGCCGAGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGATTCCGACGATCGAGGGGGCCGAGGGGGCTGTGCGCACATGATGT
*
18863952 GCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
196 GCGATGGGTGCTGGCACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
18864017 CACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTACAA
261 CACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTACAA
* * * *
18864082 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAAATA
326 TGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
* * *
18864147 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCTTGAA
391 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCTGAA
* *
18864212 CCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
456 CCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * *
18864277 AAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
521 AAGGCTTAAGGAACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATA
** * *
18864342 AAGATGTGCCTTAAGTCCACCTACCACTCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGT
586 AAGATGTGCC-TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGC
** *
18864407 CGGCATAGT-AC-CCGC-CCGCCCGCCCGCTCGTTTTATCGGTTGGCTTAGGCATACGGAGCTCA
650 CGGCATAGTGACGCC-CACCGCCCGCCCGCTCGTTCCATCGGTTGGCTTAGACATACGGAGCTCA
18864469 TTCCCAGTCTAAGATTGGACAGGACCAAGGTTTACAGCAGCAAGATCGGCATTACGTAGAGGGGG
714 TTCCCAGTCTAAGATTGGACAGGACCAAGGTTTACAGCAGCAAGATCGGCATTACGTAGAGGGGG
18864534 AACAGGTCGATCCCCGGCTTGCGCATCCCTTCCCTCTGGCCAGCTGAGCGCCCGCACATTCATTC
779 AACAGGTCGATCCCCGGCTTGCGCATCCCTTCCCTCTGGCCAGCTGAGCGCCCGCACATTCATTC
18864599 GTGGGTTGACTTAG
844 GTGGGTTGACTTAG
* ** **
18864613 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTAGACCAAGGGTTACGGTGGCACATGCTAGA
1 GCATACGGAGTCCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCTAGA
* * * * *
18864678 CTCAGGCATGTGCTGGTGCCGCATTTTGT-TTCGTCGGGGCACCATCGCCGGAGCATTATCGGAG
66 CTCAGGCATGTGCTGGTACCGCATTTT-TCTTCGTCGAGGCACCATCGCCGGAGCATCACCGAAG
* ** ** *
18864742 AACCTGACCGACGGCATTGGGGTTTTGGTGATC-AGGGGGGTCG-GGGGGCTGTGCGCACATGAT
130 AACCTGACCGACGGCATTGGGATTCCGACGATCGA-GGGGGCCGAGGGGGCTGTGCGCACATGAT
* * *
18864805 GTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCTAGAACT
194 GTGCGATGGGTGCTGGCACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
18864870 CACACCCCCTTAAAGTGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
259 CACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC---
18864935 AATGGGGACACTTTTTTCCAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
321 --T------A--------CAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
18865000 TTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
370 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAA
* * *
18865065 AAAATTTTAACAAATCCTGAACCGCAAATAGTTTTGAAAATCATGAAAAATAAAAAAGGAGTCGT
435 AAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGT
*
18865130 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATG
500 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATCAATTTACAAGCCATAAAAATG
** *
18865195 GTGTTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTT
565 GCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
18865260 GCGCATCCCGTCTCTCTGGCCGGCATAGTGTCGGCCCATCCGCCCGTCCGCTCGTTCCATCGGTT
630 GCGCATCCCATCTCTCTGGCCGGCATAGTGAC-GCCCA-CCGCCCGCCCGCTCGTTCCATCGGTT
* * * ** * * * * * * *
18865325 GGCTTCGACATACGGAGTTCATTCCTAGTCTAAGATCAGATC-GGATCGAGGGTTGCGGTAGCAG
693 GGCTTAGACATACGGAGCTCATTCCCAGTCTAAGATTGGA-CAGGACCAAGGTTTACAGCAGCAA
** ** * * * ** * * * * *
18865389 GATCGATAGCACGAAGAGGGGGACCCGACCGATCCCCGGCTTACGCAT-CCTGCCTCTCTAGTCG
757 GATCGGCATTACGTAGAGGGGGAACAGGTCGATCCCCGGCTTGCGCATCCCTTCC-CTCTGGCCA
* * * ** * * *
18865453 GC-GTAGTGCCTGCCCATTTTTTTTGTCGGTTGGCTTAG
821 GCTG-AGCGCCCGCACA-TTCATTCGTGGGTTGACTTAG
* * * * ** *
18865491 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGTGGCAGCAGGAT-C--G
1 GCATACGGAGTCCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCA-CATGCTAG
* ** * * * * ** * ** * *
18865553 ACGGCACACAAAG-G--GGGA-C-C------C--GGCCGATTCACGA---CTTGTGCATC-CCGC
65 AC-TCAGGC-ATGTGCTGGTACCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCACCGA
* * * * * * * *
18865601 CG--CTCTGGCCG--GG---TGGGGTGTGCGCAC-AT-GA-TGTG-CGA-TGGG-TGCTG-GTAC
128 AGAAC-CTGACCGACGGCATTGGGAT-TCCG-ACGATCGAGGGGGCCGAGGGGGCTG-TGCGCAC
* * ** * * * * * *
18865652 -T--TG-GCCCAT--ATATTGGCCCCCTAT-CCCTCATCAAACCTTGAGAACTCAC-A-CCCCCA
189 ATGATGTG-CGATGGGTGCTGG--CACT-TGGCC-CAT-ATA--TTG-G--CCCCCTATCCCTCA
* * * ** * ** * * * *** * * **
18865708 TAAAGAGCATTTGAGATTTTACA---GGTT--TGTTGCCA--GAAGCCATTA-AAGTGT-CTGAA
243 TCAA-A-C-CTCGAGAACTCACACCCCCTTAAAG-AGCAATTG-AGATTTTACAGGTTTGCTGCC
** * * * *
18865764 ATGGGGACACTT---TTTTC-A-AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
303 A-GTAGCCA-TTAAAGTGTCTACAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * * *
18865824 TTTTTTGTGCATGCCAACAAAGATACAAGGATAATGTCTACCAAGTTTGGGGCTAAAACTCCTTC
366 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTC
* * * * ** * * *
18865889 GAAAAAATTTTTGAAAAATCCCGAATGGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAG
431 CAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAG
* *
18865954 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
496 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATCAATTTACAAGCCATAAA
* ** * * * *
18866019 AATGGCATTGGTATGCAAAAATATGAAGATGTACCTAAA-CCACCTACCACCCTATCGATCCACA
561 AATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
** * * * * *
18866083 GCTTGCGCATCCCATCTCTCTGGCCGGTGTAGAT-AC-CGC-CCGCCCTCCCGTTCGTTTCGTCG
626 GCTTGCGCATCCCATCTCTCTGGCCGGCATAG-TGACGCCCACCGCCCGCCCGCTCGTTCCATCG
* * * * ** * * *
18866145 ATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACTGATAGGTTGT--GGC
690 GTTGGCTTAGACATACGGAGCTCATTCCCAGTCTAAGATTGGACAGGAC-CA-AGGTT-TACAGC
* * * ** * * * * * * ** *
18866208 AGTAGGATCGACAACATGCAGAGGGGGACCCGATCGATCCTCGATTTGCGCAT-CCTGCCCCTCT
752 AGCAAGATCGGCATTACGTAGAGGGGGAACAGGTCGATCCCCGGCTTGCGCATCCCT-TCCCTCT
* * ** * *
18866272 GGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAGTTAG
816 GGCCAGCTGAGCGCCCGCACATTC-ATTCGTGGGTTGACTTAG
18866315 GCATACGGAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGGACCAGACC
1 GCATAC-G-G---------AG--T---C---C--A-TTC---CCAGTCTAAGATCGGACCAGACC
* * * * ** *
18866380 GAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCGA-TTTTCTTCGTCGAGG
41 AAGGGTTACGGCAGCACATGCTAGACTCAGGCATGTGCTGGTACCGC-ATTTTTCTTCGTCGAGG
* * * * * * *
18866444 CACCATCGTCGGAGCATCCCCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCCG-GTGG
105 CACCATCGCCGGAGCATCACCGAAGAACCTGACCGACGGCATTGGGATTCCGACGAT-CGAGGGG
* * * * * **
18866508 GCCGGGGGGGTTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTGCCC
169 GCCGAGGGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCATATATTGGCCCCC
* * *
18866573 TATCCCTCATCAAACCTCGAGAACTCACA-CCCCTATAAATAGCATTTGACATTTTACAGGTTTG
234 TATCCCTCATCAAACCTCGAGAACTCACACCCCCT-TAAAGAGCAATTGAGATTTTACAGGTTTG
*
18866637 CTGCCAGTAGCCATTAAAGTGTCTGAAATGCGGATAATTTTTTCAAATGGTCACAAAATCTTGTA
298 CTGCCAGTAGCCATTAAA--G--TG---T-C---T-A------C-AATGGTAACAAAATCTTGTA
* * * * * *
18866702 CACTTCGAGTTTTTAGCTGAATTGTTTTCTGCATGCCAACAAAAGTACATGGATCATGTCTACCA
344 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * * ** **
18866767 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGTTAAAAGTTTCAAAA
409 AGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAA
* * *
18866832 ATCATGAAAAATAAAAAACTAGTCGTCTGGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
474 ATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATT
* ** *
18866897 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
539 GTATCAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCA
* * * * * * *
18866962 CCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGT
604 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCATAGTG-ACGCCC-A
* * * *
18867027 CCGCCCGCCCGCTCGTTTCATCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
667 CCGCCCGCCCGCTCGTTCCATCGGTTGGCTTAGACATACGGAGCTCATTCCCAGTCTAAGAT
18867089 CAGACCAGAC
Statistics
Matches: 1947, Mismatches: 355, Indels: 299
0.75 0.14 0.11
Matches are distributed among these distances:
822 1 0.00
823 60 0.03
824 84 0.04
825 10 0.01
826 2 0.00
827 53 0.03
828 252 0.13
835 2 0.00
837 2 0.00
843 1 0.00
845 1 0.00
846 3 0.00
847 4 0.00
848 3 0.00
849 52 0.03
850 9 0.00
851 14 0.01
852 15 0.01
853 15 0.01
854 13 0.01
855 148 0.08
856 151 0.08
857 9 0.00
858 2 0.00
859 1 0.00
860 8 0.00
861 3 0.00
862 14 0.01
865 13 0.01
866 5 0.00
867 6 0.00
868 1 0.00
869 1 0.00
870 2 0.00
871 14 0.01
872 9 0.00
873 65 0.03
874 267 0.14
875 13 0.01
876 22 0.01
877 142 0.07
878 74 0.04
879 11 0.01
880 1 0.00
881 4 0.00
883 1 0.00
886 1 0.00
887 1 0.00
892 1 0.00
900 251 0.13
901 51 0.03
902 1 0.00
903 2 0.00
905 56 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (857 bp):
GCATACGGAGTCCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCTAGA
CTCAGGCATGTGCTGGTACCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCACCGAAGA
ACCTGACCGACGGCATTGGGATTCCGACGATCGAGGGGGCCGAGGGGGCTGTGCGCACATGATGT
GCGATGGGTGCTGGCACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTACAA
TGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCTGAA
CCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGAACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATA
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCC
GGCATAGTGACGCCCACCGCCCGCCCGCTCGTTCCATCGGTTGGCTTAGACATACGGAGCTCATT
CCCAGTCTAAGATTGGACAGGACCAAGGTTTACAGCAGCAAGATCGGCATTACGTAGAGGGGGAA
CAGGTCGATCCCCGGCTTGCGCATCCCTTCCCTCTGGCCAGCTGAGCGCCCGCACATTCATTCGT
GGGTTGACTTAG
Found at i:18866351 original size:26 final size:25
Alignment explanation
Indices: 18866315--18866366 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
18866305 GTTGAGTTAG
18866315 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTC-CAGTCTAA
18866341 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
18866366 G
1 G
18866367 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 9 0.35
26 17 0.65
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:18869509 original size:26 final size:26
Alignment explanation
Indices: 18869473--18869525 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18869463 GTTGACTTAG
*
18869473 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18869499 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18869525 G
1 G
18869526 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18870435 original size:171 final size:171
Alignment explanation
Indices: 18870172--18870489 Score: 417
Period size: 171 Copynumber: 1.9 Consensus size: 171
18870162 CCCGCCCGTC
* * *
18870172 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCTGTCTAAGATCAGACTAGACCA
1 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCA
* * * * *
18870237 ATGGTTGCGGTAGCAGGATTGGCAGCATGCAGAGGGGGACCCGA-CAAATCCCCGGCTTACGTAT
66 ATGGTTGCAGCAGCAGAATTGGCAGCATGCAGAGGGAGACCCGATC-AATCCCCGGCTTACGCAT
*
18870301 CCCGCCCCTCTGGCCGACGTAATGCCCGCCCGCCTGTCCGCT
130 CCCACCCCTCTGGCCGACGTAATGCCCGCCCGCCTGTCCGCT
* * **
18870343 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTG
1 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CC
* * * * * *
18870408 AA-GGTTGCAGCAGCCA-AATTTGCAGCATGCTGAGGGAGACCCGATCGATCTCTGGCTTGCGCA
65 AATGGTTGCAGCAG-CAGAATTGGCAGCATGCAGAGGGAGACCCGATCAATCCCCGGCTTACGCA
18870471 TCCCACCCCTCTGGCCGAC
129 TCCCACCCCTCTGGCCGAC
18870490 TGAGGGTCCG
Statistics
Matches: 125, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
171 120 0.96
172 5 0.04
ACGTcount: A:0.19, C:0.30, G:0.27, T:0.23
Consensus pattern (171 bp):
CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCA
ATGGTTGCAGCAGCAGAATTGGCAGCATGCAGAGGGAGACCCGATCAATCCCCGGCTTACGCATC
CCACCCCTCTGGCCGACGTAATGCCCGCCCGCCTGTCCGCT
Found at i:18870556 original size:26 final size:26
Alignment explanation
Indices: 18870526--18870578 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18870516 GTTGACTTAG
18870526 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
18870552 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18870578 G
1 G
18870579 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18871617 original size:26 final size:26
Alignment explanation
Indices: 18871580--18871632 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18871570 GTTGAGTTCG
* *
18871580 GCATACGGAGTTGATTCCCCA-TCTAA
1 GCATACGAAGTTCATT-CCCAGTCTAA
18871606 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18871632 G
1 G
18871633 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18872926 original size:873 final size:874
Alignment explanation
Indices: 18870552--18875015 Score: 5231
Period size: 873 Copynumber: 5.1 Consensus size: 874
18870542 CCCAGTCTAA
* * * * * *
18870552 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGTGTTACGGTAGCAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAAGATC-GCA
* * * **
18870617 GCACGCAGAGGGGGACCCAGCTGATCCCCAGCTTGAGCATCCCACCCCTTTGGCCGGCTGAGCGC
65 GCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCCGGCTGAGCGC
* * * * * *
18870682 CCACACAG-TCGTTCCGTGGGTTGTTCCAATCTAAGCATACGAAGTTCATT-CCAATCTAAGATC
130 CCGCAC-GCTCGTTTCGTGGGTTG----ACT-TAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
18870745 G-GATCAGACCGAGGGTTGCAGCAGTC-CATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTT
189 GAAATCGGATCGAGGGTTGCGGCAG-CACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTT
* * * * * * * **
18870808 CTTCATCGGGGCACCATTGCCGGAGCATCATCGGAGAACCTAACTGACGGCATTGGGGTTCCGGT
253 CTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
* * * * *
18870873 GATCGAGGGGTCGGGGGGGGTGTGCGCACATCATGTTCAATGGGTGCTGGTAGTTGGCCCCTATA
318 GATCGAGGGG-C-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG-CCCTATA
* *
18870938 TTGGCCCCCTATCCCTCATCAAACCTCCAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTA
380 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
18871003 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAA
445 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
18871068 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAA-ACAAGGATCA
510 ATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAA-AAAAAATACAAGGATCA
** * ** * * * * **
18871132 TATCTACTAAGTTTGGGGTGAAAAATCCTTCTGAAAAACTTTTAAAAAATCCTGAACCACAAAAA
573 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* * *
18871197 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGGCTTGCCATGAAACTTCACATGATGGCTTAA
638 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * * *
18871262 GGGACCGTTGTATGAATTCACAAGCCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGC
703 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* *
18871327 CTAAACCCATCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT----GGC-T-G-G
768 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * * *
18871385 -C-GCCCG--C--CAGCCCGTTCCTTTCTTCGGTTGGCTTAG
833 CCTGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * *
18871421 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGTAGCAAGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAAGATC-GCA
* ** * * * *
18871486 GCACGCAGAGGGGTACCCAGCCGATCCTTGGCTTGCGCAT-CTCGCCCCTCTGGCAGGCTGAACA
65 GCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCT-GCCCCTTTGGCCGGCTGAGCG
* * * *
18871550 CCCACACGCTCGTTTCGTGGGTTGAGTTCGGCATACGGAGTTGATTCCCCA-TCTAAGCATACGA
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCCAGTCTAAG-AT-CGA
* * *
18871614 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTAGGGGCAGCCCATGCTGGGCTC-AGGC
191 A----A-T--C-G-----GAT----------CGAGGGTTGCGGCAGCACATGCTGGGCTCGA-GC
* * * *
18871678 ATGTGCTAGTGCCGTATTTTTCTTC-ACTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTAA
232 ATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
* * * *
18871742 TCGGCGGCATTGGGGTTCCGACGAT-------CTGGGGGGTGTACGCACATGATGTGCGATGGGC
296 CCGGCGGCATTGGGGTTCCGACGATCGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
18871800 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTT
361 GCTGGTACTTGGCCC-TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
18871865 AAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACAT
425 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
18871930 TTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
490 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCC
** * * * *
18871995 AAAAAAAATACAACCATCATGGCTACCAAGTTTGGGGCCAAAACGCCTTCCGAAAAAATTTCAAA
554 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * * *
18872060 AAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATGGAAAACGAGTCGTCTTGCCTTGAA
619 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
18872125 ACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
684 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* *
18872190 CAGAAATATGAAGATGTGCCTAAACCGACCTATCACCCTATCGATCCACGGCTTGCGCATCCCGT
749 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
18872255 CTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
814 CTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
18872316 GCATACCGAGTTAATTCCCAGTGTAAGATCAAATCAGACCGAGGGTTACGGCAGCAAGATCGCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAAGATCGCAG
* * * * *
18872381 CACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCTTTTGACCGGTTGAGCGCC
66 CACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCCGGCTGAGCGCC
18872446 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG-AATCG
131 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAATCG
* * * *
18872510 GATCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCACATATTTCTTTGTCG
196 GATCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
** * * * ** * * * *
18872575 GGGCACCATCGTCGGAGCATCACCGAAGAATCGGATTGGTGGCATTAGGGTTCAGGCGATCGGAG
261 GGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GAG
* * * *
18872640 GGGCCGGGGGGTGGGCACACATGATGTGCGATTGGTGCTGATACTTGG-CCT-TATTGGCCCCCT
325 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTATATTGGCCCCCT
*
18872703 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
390 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
18872768 GCCAGTAGCCATTAAAGTGT-TTAGAATGGGGACAGTTTTTTCAAATGGTCACAAAATTTTGTAC
455 GCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
18872832 ACTTCGAGTTTTTAGCTGCATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAA
519 ACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
** * * * *
18872897 GTTTGGGGCGTAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCGAAAA
583 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* * *
18872962 TCGTGAAAAATAGAAAACGAGGCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTG
648 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
18873027 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAGTTTGAAGATGTGCCTAAACCCAC
713 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
18873092 CTATCACCCTATCGATCCACGACTTGCGCATCCCATCTCTCTGGCCGACGTCGTGCCTGCCCGCC
778 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCT----GCC
**
18873157 CGCCCGTCCGCCCGCTCGTTTCGTTTGTTGGCTTAG
839 CGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
** * * *
18873193 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGATCGAGAGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAAGATCG-CA
* * ** *
18873258 GCACGCAAAGGGGGACCCTA-CCAATCCCCAACTTGCGCATCCTGCCCCTTTGGCCGGCTGAGTG
65 GCACGCAGAGGGGGACCC-AGCCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCCGGCTGAGCG
* **
18873322 CCCGCAAGCTCGTTTCGTGCTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAA
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CGAA
* * *
18873387 GTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACAGCAGCACATGCTGGGCGCGAGCAT
192 ----A-T--C-G-----GA-T---------CGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAT
* * *
18873452 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATTGTCGGAGAACTTGACCG
234 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
* * * *
18873517 ACGGCATTGGGGTTCCGACGATCAGGGGGGCCGGTGGGGGTGTGCGTAGATGATGTGCGATGGGT
299 GCGGCATTGGGGTTCCGACGATC-GAGGGGCC-G-GGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
18873582 G-TGGGTACTTGGCCCTTATACTGGCCCCCTATCCTTCATCAAACCTTGAGAACTCACACCCCCT
361 GCT-GGTACTTGGCCC-TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
18873646 GAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGTAATGGGGACA
424 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * * * *
18873711 CTTTTTTCAAATAGTCACAAAAGCTTGTACAGTTCGAATTTCTAGCTGAATTGTTTTGTGCATGG
489 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGC
* * *
18873776 CAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAA
553 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * ** * *
18873841 AAAATCCCAAATCGTAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGTCTTGCCGTGA
618 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
18873906 AACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTATAAGCCATAAAAATGGCATTGGCAC
683 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
18873971 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCACATCCCG
748 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
18874036 TCTCTATGGCGGGCATAGTG-CTCGCCCGCCCGT----CCGCTCGTTTCGTTGGTTGGCTTAG
813 TCTCTCTGGCCGGCGTAGTGCCT-GCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * ** * * *
18874094 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCAACTGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAAGA-TCGCA
* * * * * * ** *
18874159 GCACGCAGAGGGTGACCCGGTCGATCCTCGGCTTGCGTATCCAGCCCCTCAGGTCGGCTGAGCGC
65 GCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCCGGCTGAGCGC
* * *
18874224 CCGCACGCTCGTTTGGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAAGATCGAAACC
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAATC
* * * * ** * *
18874289 AGACCGAGGGTTGTGACAGCACATGCCAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCCTCGTC
195 GGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * * *
18874354 GAGGCACCATCGCCGGAGCATCGTCGAAGAACCTGA---ACGGTATTGGGGTTCCGACAATC-AT
260 GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGA-
18874415 GTGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGG-C
324 G-GGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC-TATATTGGCC
*
18874478 CCCTAATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
386 CCCT-ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
18874543 TTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTT
450 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
18874608 GTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
515 GTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* * *
18874673 CCAAGTGTGTGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTCA
579 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
* * *
18874738 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTTACGTGAAGGTTTAAGGGACC
644 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
** *
18874803 ATTGTATGAATTTACAAGCCATAAAAATGGCAGGGGCATGCAGAAATATGAAGATGTGCCTAAAC
709 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * * ** * *
18874868 CCACATACCACCCTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGATCGGTGTAGTGCCCGCC
774 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCC
* * * **
18874933 CGCCCGCCCACCCACTCGTTTCGTCAATTGGCTTAG
839 CGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* *
18874969 GCATACGGAGTTCATTTCCAGTCTAAGATCGAACCAGACCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTT
18875016 CCAGTAGCAC
Statistics
Matches: 3075, Mismatches: 407, Indels: 220
0.83 0.11 0.06
Matches are distributed among these distances:
864 15 0.00
865 8 0.00
866 5 0.00
867 2 0.00
868 99 0.03
869 130 0.04
870 5 0.00
871 418 0.14
872 42 0.01
873 446 0.15
874 1 0.00
875 64 0.02
876 120 0.04
877 89 0.03
878 112 0.04
879 2 0.00
880 2 0.00
881 12 0.00
882 436 0.14
883 2 0.00
884 1 0.00
885 1 0.00
886 7 0.00
887 2 0.00
888 2 0.00
889 2 0.00
890 3 0.00
891 108 0.04
892 3 0.00
893 7 0.00
894 101 0.03
895 80 0.03
899 4 0.00
900 2 0.00
901 174 0.06
902 2 0.00
904 108 0.04
905 13 0.00
906 34 0.01
907 2 0.00
908 4 0.00
909 404 0.13
910 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (874 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAAGATCGCAG
CACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAATCG
GATCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
GGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGG
GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTATATTGGCCCCCTA
TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGT
CCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:18873389 original size:26 final size:26
Alignment explanation
Indices: 18873352--18873404 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18873342 TTTGACTTAG
*
18873352 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18873378 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18873404 G
1 G
18873405 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18879917 original size:26 final size:26
Alignment explanation
Indices: 18879881--18879933 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18879871 GTTAACTTAG
18879881 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
* *
18879907 GCATATGGAGTTCATTCCCATTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
18879933 G
1 G
18879934 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:18880766 original size:26 final size:26
Alignment explanation
Indices: 18880730--18880782 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18880720 GTTGACTCAG
*
18880730 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
18880756 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
18880782 G
1 G
18880783 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:18881668 original size:26 final size:26
Alignment explanation
Indices: 18881631--18881683 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18881621 GTTGACTTAG
*
18881631 GCATACGAAGTTC-TTTCTCAGTCTAA
1 GCATACGAAGTTCATTGC-CAGTCTAA
*
18881657 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGAAGTTCATTGCCAGTCTAA
18881683 G
1 G
18881684 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTGCCAGTCTAA
Found at i:18882332 original size:894 final size:889
Alignment explanation
Indices: 18880357--18893561 Score: 13505
Period size: 894 Copynumber: 14.9 Consensus size: 889
18880347 AAAATTTTAA
*
18880357 AAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
1 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
** * * *
18880422 GCCATAAAAATGGCATTGGCACATAAAAATATGAAGAGGTGCCTAAAGCCACCTACCACCCTATC
66 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * ** *
18880487 GATCTACGGCTTGCGCATCCCATCTTTCTGGCAGATGTAGTGCCTGCCCGCCCGTCTACTCGCTC
131 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-C--C-CGCTC
* * **
18880552 GTTTCTTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACTGGATCGAGGG
192 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGATCGAGGG
** * * * * * * * *
18880616 TTGCGGCAGCAGGATCGGTAGCACGCAGAAGAGGACTC-GACTGATCCCCGGCATACGCATCACG
256 TTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCG
* * * * *
18880680 CCCCACTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTCAGGCATACGGAGTTCAT
320 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * * * *
18880745 TCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAAGGTTACGGTAA
385 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAG
* * * * * *
18880810 CACATTCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGC
450 CACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATC-TCGGAGC
* * * *
18880875 ATCGTCGGAGAACCTGACCGGCGGCAATGGGGTTCCGACGATCGAGGAGCCAGGGGGTGTGCGCA
514 ATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCA
* * * * *
18880940 TATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCTCTATCCCTTATCAAACCTCA
579 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* *
18881005 AGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGT
644 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-----A--
** * * *
18881070 GTCTGAAATGAAGACACTTTTTTCAAATGATCACAAAATCTTGTACAGTTCGAGTTTTTAG-TAA
702 G--TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
18881134 ATTTTTTTGTGCATGCCAAAAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAAATCCT
765 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* *
18881199 TTCGAAAAAATTTTAAAAAATCTCGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAG
830 TCCGAAAAAATTTTAAAAAATCTCGAACCGTCAAAAAGTTTCAAAAATCGTGAAAAATAG
* * * *
18881258 AAAATGAGGT-GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATAAATTTGCA
1 AAAACGA-GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * *
18881322 AGCAATAAAAATGGCATTGGCACACAGAAATAAGAAGATGCGCCTAAACCCACCTACCACCCTAT
65 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
18881387 CGATCCACAGCTTGCGCATCCCGTCTCTCTAGCTGGCGTAGTGCCCGCCCGCCCGCCCATCCGCT
130 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C--CCGCT
* * * * * *
18881452 CGTTTTGTTGATTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAAATCAGACCACATCGAGGG
191 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGG
* * * * * * *
18881517 TTGCGGCAGTAGGATCGACAGCATGCAGAGGGGGACCCAGCCGATCCTCAGCTTGCGCATCCCGC
256 TTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGC
* * * * * * *
18881582 CCTTTTGGCCGGCTAAGCTCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCTTT
321 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
* * * *
18881647 CTCAGTCTAAGCATACGGAGTTCATTGCCAGTCTAAGATCGGACCAGACCGCGGGTTACAGCAGC
386 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGC
* * *
18881712 ACATGCTGGGTTTGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCTCCGGAGCA
451 ACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCT-CGGAGCA
* * * * *
18881777 TTGTCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACAATCGGGGGGGCCGGGGGGGGTGTGCA
515 TCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCA
* * *
18881842 CATGTTGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCG
579 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* *
18881907 AGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCA-TGAAAT
644 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTGAAAT
* * *
18881971 GGGGACACTTTTTTCAAATGGTCACAAAAACTTGTACACTCCGTGTTTTTAGCTGAATTTTTTTT
709 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
*
18882036 GTGCATGCCAA-AAAGAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAACTCCTTCCGAAA
773 GTGCATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
18882100 AAATTTCAAAAATTCTCGAA-CATCAAAAAGTTTCAAAAATCGTGAAAAATAG
837 AAATTTTAAAAAATCTCGAACCGTCAAAAAGTTTCAAAAATCGTGAAAAATAG
* *
18882152 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCATAAGGGACCATCGTATGAATTTACAA
1 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
18882217 GCCATAAAAATGGCATTGGTACGCAGAAATATGAAGATGTGTCTAAACCCACCTACCTCCCTATC
66 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* *
18882282 GATCCACGGCTTGCGCATTCCGTCTCTCTGGCCGGCGT--TG--TGCCCGCCCGCCCGCTCGTTT
131 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTT
* * ** *
18882343 CGTCGGTTGGCTTACGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGTG
196 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCG
* * * ** * *
18882408 CCAGGAGGATCAACAGCACGTAGAGGGGGACTAGGCCGATTCCCGGCTTGCGCATCCCGCCCCTC
261 GCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTC
** * * *
18882473 TGGCCAACTGAGCGCCCGCGCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTACCAG
326 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * *
18882538 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGG-TGCCGGTAGCACAT
391 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG-CAGCAGCACAT
* * * *
18882602 GCTGGGCTCGGGTATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGC
455 GCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATC-TCGGAGCATCGT
* * * ** **
18882667 CAGAGAACCTGACAGGCGGCATTGGAGTTTTGACGATCGAAAGGGCCGGGGGTGGTGTGCGCACA
519 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCC-GGGG-GGTGTGCGCACA
* * *
18882732 TGATGTGCGATAGGTGCTGGTACTTGGCCCTTGTATTGGTCCCCTATCCCTCATCAAACCTCGAG
581 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
18882797 AACTCACA-CCCCTGTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
646 AACTCACACCCCCT-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-----A--G
**
18882861 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAAATGAA
703 --TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * ** *
18882926 TTTTTTTGAGCATGCCAATAAAAATACAAGGATCACGTCTAAAAATTTTGGGGCCAAAACTCCTT
766 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * *
18882991 CTGAAAAAATTTTAAAAAATCTCAAACC-ACAAAAAGTTTCAAAAATCATGCAAAATAG
831 CCGAAAAAATTTTAAAAAATCTCGAACCGTCAAAAAGTTTCAAAAATCGTGAAAAATAG
*
18883049 AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
1 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * ** *
18883114 GCCATAAAAATGGCATCGACACATAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATC
66 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
18883179 GATCCACAGCTTGCGCATCCCGTCTATCTGG-C--CGT--CGCCCGCCCGCCCGCCTGCTCGTTT
131 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTT
* * *
18883239 CATCGGTTGGCTT-GAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAG-TCTAAGATCGT
196 CGTCGGTTGGCTTAG-GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC---GA--G-
* * * * * ** * *
18883302 GAAAAATAGAAAACGAGTCATCTTGCCAT-GAAACTTCACGT-GAAGGCTTAAGGGACCATTGTA
254 G----GTTG----CG-G-CAGC-AG-GATCG--ACAGCACGTAG-AGG-----GGGACC--CG-G
* * * *** * * * * * *
18883365 TGGATTTACCAGCCATAAAAATGGCATTG-GCATGCAG-AAATATGATGATGCGCCTAAACCCAC
296 TCGA--T-CC--CC--------GGC-TTGCGCATCCCGCCCCTCTG--G--CCGGCTGAGCGC-C
* * * * * * * **
18883428 CTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCCCTCTGGCCGACATAGTGCCCGCCCGCC
342 C--GCACGC--TCGTTTCA-----TG-G-GT-T-G--ACT-TAG--G-CATA-----CG---GAG
** * * * * * *
18883493 CGCCTGCTCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTGCCAGTCAAAGATCTGA
380 TTCAT--TC-C-CA-G--------T--C-TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * *
18883558 TCGGACCGAGGGTTGC-GACAGCACATGCTGGGCTCGGGCATGTGCTGGGGTCACATTTCTCTTC
429 CCAGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * * * * * *
18883622 GT-TAGGGCACCATCACCGGCGCATCGCCGGGGAACTTGATCGTCGGTATTGGGGTTCCGACGAT
493 GTCGA-GGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
* * * *
18883686 CGGAGGGTCGGGGGGGTCTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATT-G
556 CGG-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
18883750 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
620 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
18883815 TCTGCTGCCAGTACCCATTAAAGTGTCTAAAATGAGGACACTTTTTTCAAATGGTCAC-AAATCT
685 TTTGCTGCCAGTAGCC-----AGTG----AAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
18883879 TGTACACCTCGAGTTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTC
741 TGTACACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* ** * *
18883944 TACCAAGTTTGGGGCCAAAACTCTTTTTG-AAAAATTTGAAAAAATCCCGAACCG-CAAAAAGTT
805 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTCAAAAAGTT
18884007 TCAAAAATCGTGAAAAATAG
870 TCAAAAATCGTGAAAAATAG
* *
18884027 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGGATTTACCA
1 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
18884092 GCCAT-AAAATGGCATTGGCATGCAGAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
66 GCCATAAAAATGGCATTGGCACGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
18884156 CGATCCACGGCTT--GCATCCCGTGTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTT
130 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTT
* * ** * * *
18884219 TCGTCAGTTGGCTTAAGCATACGGAGTTCATTCATAGTCTAAGATCAGACCCGATGGAGGGTTAC
195 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGC
* * * * * *
18884284 GGCAGCAAGATCAACAGCACGCAGAGGGGGACCCGGTCGATCCCCAGCTTGTGCATCCCACCCCT
260 GGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCT
* * *
18884349 CTGGCCGGCTGAACGCCCGCACTCTCCTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
325 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * *
18884414 ATCTAAGCATACGGAGTTTCATTCCCAGTCTGATAGATCGGACCGGACTGA-GGTTGC-GACAGC
390 GTCTAAGCATACGGAG-TTCATTCCCAGTCT-A-AGATCGGACCAGACCGAGGGTTGCAG-CAGC
* * *
18884477 ACATGCTGGGCTTCGA-CATGTGCTGGTGCCGTATTTTTCTTCG-CCAGG--GCA---C----CA
451 ACATGCTGGGC-TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCTCGGAGCA
* * * * ** *
18884531 TCGTCGAAGAATCTGACCGGCGACATTAGGGTTCCGGTGATC-----G--GGGGGGTGTGGGCAC
515 TCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCAC
**
18884589 ATGATGTGC-AAAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT-AAAGCCTCG
580 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CCTCG
* *
18884652 AGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGT
644 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-----AGT
* **
18884717 GTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTTAAGTTTTTAGCTGA
704 G----AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
18884782 ATTTTTTTGTGCATGCCAACAAAAATACGAGGATCACGTCTACCAAGTATGGGGCCAAAACTCCT
765 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * *
18884847 TCTGAAAATATTTAAAAAAATCCCGAACCG-CAAAAAGTTTCAAAAATCGTGAAAAATAG
830 TCCGAAAAAATTTTAAAAAATCTCGAACCGTCAAAAAGTTTCAAAAATCGTGAAAAATAG
* *
18884906 AAAACAAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
1 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
** *
18884971 GCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATC
66 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
18885036 GATCCACGGCTTACGCATCCCTTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCTCCGCTC-AT
131 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC-CCGCTCGTT
18885100 TCGTCGGTT-GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GA-CGA-GGTT-C
195 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGC
* *
18885160 -GCAGCA-G-T--ATAGCACG-AGA-GGGG--CC---CGAT---C-G---GC-CAT---G--TC-
260 GGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * *
18885199 CT-GCC-G-TCAGCAACCCGCA-TCTCG-TT--TGGGTTG-CTTAGGCATACGAAGTTCATT-CC
325 CTGGCCGGCTGAGC-GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
*
18885255 AGTC-AA--A-A---AG-----TCCCAG-CT---ATC-G---AG--CGA--GTT--TG-AGC-CA
389 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACA
* * ** * * * * *
18885292 -GCTGGGC-CGGGCATGCTG-TTGT-CAC-ATTTTTTCCGTCAGGC-A-CCACTGATC-CGGAAC
454 TGCTGGGCTCGAGCATG-TGCTGGTGC-CGCATTTTT-CTTC-GTCGAGGCAC-CATCTCGGAGC
* * * ** * * * *** * ** * ** * **
18885349 CTGGCGGCATTGGGGTTCCGGCGATCGGGGGCCGGGGGGGTGTGTATCACAT-GATGTG-CGATG
514 AT--C-G--TCGGAGAACC--TGACCGGCGGCATTGGGGTTCCG-A-C-GATCGGGGGGCCGGGG
* ** ** ** ** * ** * ** * * ***
18885412 GGTGCTG-GTAC-T--TG-GCCCT-TATATTGGCCCCCTATCCCTCATCA---AACCTCAAGAAC
569 GGTG-TGCGCACATGATGTGCGATGGGTGCTGG-TACTTGGCCCTTAT-ATTGGCCCCCTATCCC
** ** * *** **** * * * *** *
18885468 TCA-CACCCCTTTAAGGAGCATTTGA-GATTTTACAG-G--TTTGCTGCCAGTAGCCA---TTA-
631 TCATCAAACC-TCGA-GAAC-TCACACCCCCTTAAAGAGCATTTG-AG--ATTTTACAGGTTTGC
* *
18885524 ---AAGT-GTC--TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
690 TGCCAGTAGCCAGTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
18885583 TTTTAGCTGACTTTTTTTGTGTATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
755 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * **
18885648 CAAAATTGCTTCCAAAAAAATTTTAAAAAATCCCGAA-C-TACAAAAAGTTTTGAAAATCGTGAA
820 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGT-CAAAAAGTTTCAAAAATCGTGAA
*
18885711 AAATAA
884 AAATAG
* * * * *
18885717 AAAATGTGTCATCTTGCCGTGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAA
1 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
18885782 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACTCTATC
66 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * * *
18885847 AATCCACGGCTTGCGCATCCCGTCTCTCTAGCCAGCATAGTGCCCGCCCGCCTGCCCG-TCATTT
131 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTT
* * * * * *
18885911 CGTCGATTGGCTTAGGCATAAGGAATACATTCCCAGTCTAAGAT-AGCACC-GAATTGA-GGAT-
196 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAG-ATCGAGGGTTG
* * ** * * * * * *
18885972 CAGCAGCAGAATCGGTAGCACGTAGAGGGAGGACCC-GACCAGCCTCGGCTTGTGCATCCCACCC
259 CGGCAGCAGGATCGACAGCACGTAGAGGG-GGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCC
**
18886036 CTCTGGCCAACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTCATTC
323 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG-TTCATTC
* * * *
18886101 CCAGTCTAAGCATATGGAGTTCATT-CCAGTCTAAGATCAGA-CGGATCGAGGGTTGC-GCAGCA
387 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCA
* * *
18886163 CATGCCAGGGCTC-AGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCAACATCGCCGGAGC
452 CATG-CTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATC-TCGGAGC
* *
18886227 ATCGTCTGGAGAACCTGACC-GCGGCACT-GGGTT-CGACGATCGGGAGGCCGGGGGGTGTGCGC
514 ATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGC
18886289 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
578 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
18886354 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTGTTGCCAGTAGCCATTAAAG
643 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-----A-
*
18886418 TGTCTGAAATGGGGACAC-TTTTTCAAATGGTCAC-AAATCTTGTACACTTCAAGTTTTTAGCTG
702 -G--TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
*
18886481 AATTTTTTTGTGCATGCCAACAAAAATAC-AGGATCACGTCTACCAAGTTT-GGGCTAAAACTCC
764 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * *
18886544 TT-CTAAAAAATTTTAAAAAATCCCAAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAG
829 TTCCGAAAAAATTTTAAAAAATCTCGAACCGTCAAAAAGTTTCAAAAATCGTGAAAAATAG
18886603 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AGGGACCATTGTATGAATTTACAA
1 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
18886667 G-CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
66 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * ** *
18886731 AATCCACAGCTTGCGCAGCTTGTCTCTCTGGCCGACGTAGTGCCCGTCTGCCCGCGCCCGCCCGC
131 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA------G--TG-CC-CGCCCGCCCGC
* * * * * *
18886796 CCGCTCGTTTCGTCGGTT-GATTAGGCATACAGAGTTCATTCCCAATCTAAGAT-TGAATCGGA-
186 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGAT
* * * * ** * *
18886858 CTGAGGGTTG-TGCAGCAGGATCGGCAGCACGCAAAGGGGGA-CCGACCGAT-CCTGGGTTGCGC
250 C-GAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
* * * *
18886920 ATCCTG-CCCTCTGG-CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGGA
314 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
*
18886983 GTTCATCCCCAGTCTAAG-AT-C-G-G---A----C---C---GA-C-G---AG--C-A---TT-
379 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * *
18887019 -AG-ACGCACATGCT-GGCTTGGGCATGTGCTGGTG-CGCATTTTTCTTCGTC-AGGCACCA-AT
444 CAGCA-GCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCT
*
18887078 CGGAGC-TC--CGGAGAACCTGACCGGCGGCATT-GGGTTCCGACGATCGGGGGGCCAGGGGGTG
508 CGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTG
* *
18887139 TGCGCACATGATGTGCGAT-GGTGCTTGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAA
573 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
18887203 ACCTCAAGAACTCACACCCCCTT-AAGAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCAT
638 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC--
*
18887266 TAAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAAT-TTGTACACTTTGAG-TTT
701 ----A--G--TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
18887328 TAGCTGAATTTTTTTGTGCATG-CAA-AAAAATACAAGGATCACGTCTACCAAG-TT-GGGCCAA
758 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-A
* *
18887389 AAACT-CTTCC-AAAAAATTTTAAAAAATCTCGAA-CGGCAAAAAGTTTCAAAAATCATGAAAAA
822 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTCAAAAAGTTTCAAAAATCGTGAAAAA
18887451 TAG
887 TAG
18887454 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA-AA
1 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
18887518 GCCATAAAAAATGGCATTGGCATGCAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
66 GCCAT-AAAAATGGCATTGGCACGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * **
18887583 TCGATCCACGGCTTACGCATCCCATCTCTCT-GCCGACGTAGTGCCCG-CCGCTCCGCTGGCTCG
129 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC-CCGCCCGCTCG
* * *
18887646 TTTCATCGGTTTGCTTAGGCATACGGAGTTCATTGCCAGTCTAAGATCAGACCAGA-CTGAGGGT
193 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGT
* * * * * * * *
18887710 TGCTGTAGTAAGATC-AGCAGCACATAGAAGGGGACCCGGTCGATCCCCAGCTTGCCCATCCCGC
257 TGCGGCAGCAGGATCGA-CAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGC
* * * * *
18887774 TCTTTTGGCCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
321 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
* * ** *
18887839 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTCACGGCAGC
386 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGC
* * * * *
18887904 ACATGTTGGGCT-AAGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCAACATCGTCGGAGC
451 ACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATC-TCGGAGC
* * *
18887968 ATCGTCAGAGAACCTGACCGGTGGCACTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGC
514 ATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGC
*
18888033 ACATGATGTGCGAT-GG-GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT
578 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
18888096 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
643 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-----A-
* *
18888161 TGTCTGAAATGGGGATACTATTTTCAAATGGTCAC-AAATCTTGTACACTTC-AGTTTTTAGCTG
702 -G--TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* *
18888224 -ATTTTTTTGTGCATG-CAA-GAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACC
764 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * * *
18888286 TTTCGAAAAAATTTTTAAAAATC-CCAATCG-AAAAAAGTTTCAAAAATCGTGAAAAATA-
829 TTCCGAAAAAATTTTAAAAAATCTCGAACCGTCAAAAAGTTTCAAAAATCGTGAAAAATAG
18888344 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
1 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
18888409 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATC
66 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
18888474 AATCCACGCCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG--C-TTT
131 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTT
* * * * *
18888536 CATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACCGGACCGAGGGTTGCG
196 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCG
* * * ** *
18888601 GCAGCAGGATCGACAGCATGCAGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTC
261 GCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * *
18888666 TGGCCGGTTAAGCGCCCGCACGCTCATTTTATGGGTTGAC-T-----TA--G-G--------CA-
326 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* *
18888713 --T-A-C--A--GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG-TGACAGCACAT
391 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAG-CAGCACAT
* * * ** * *
18888769 GTTGGGCTCGGGCATGAGCTGGTGCCGCACGTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGT
455 GCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATC-TCGGAGCATCGT
*
18888834 CGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGCC-GGGGGTGTGCGCACATGA
519 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGA
18888898 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCGAGAAC
584 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
18888962 TCACACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
649 TCACAC-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-----A--G--T
*
18889027 GAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTT
704 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
18889091 TTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAC-CCTT-CT
769 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * *
18889153 AAAAAATTTTAAAAAAATCCCAAACCG-AAAAAAGTTTTGAAAAATCGTGAAAAATAG
834 AAAAAATTTT-AAAAAATCTCGAACCGTCAAAAAG-TTTCAAAAATCGTGAAAAATAG
* *
18889210 AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGGATTTACAA
1 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
18889274 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
66 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
18889339 GATCCACGGCTTGCGCAT-CCGTCATCTCTGGCCGACGTAGTGCCCGCCCGTCGGCCCGCTCGTT
131 GATCCACGGCTTGCGCATCCCGTC-TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTT
* * * * ** **
18889403 TCGTCAGTTGGCTTAGGCATACGGAGTTCATTTCGAGTCTAATATTGGACCAGA-CTGATAGTTG
195 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTG
* * * * * *
18889467 TGGCAGCAGGATCGACAACACATAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCTCGCCTC
259 CGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCC
* * * * **
18889532 TCTGGCCGACTGAGCGCTCGCACGCTCGCTTCGTGGGTTGACTTAGGCATACGTTGTTCATTCCC
324 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * *
18889597 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGATCGAGGGATGCAGCAGCACA
389 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACA
* * * *
18889662 TGCTGGGCTCGAGCGTGTGCTGGAGCCGCATTTTTCTTCGTCG-GGACACCATCGCTAGAGCATC
454 TGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGG-CACCATCTC-GGAGCATC
** * * ** * * *
18889726 ACCGGAGAACCTGACTGGCGGCATTAGGGTTTTGACGATTGGGGGGCCGAGGGGTGTGTGCACAT
517 GTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACAT
*
18889791 GATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGG--------CCC-CATCAAACCTCGAGA
582 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
18889847 ACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCAATTAAAGTGTA
647 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC-----CA--G--
* * *
18889911 TGAAATAGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATT
703 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
18889976 TTTTTGTGCATGCCAACAAAAATACAA-G-----G-------AGTTTGGGGCCAAAACTCCTTCC
768 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* ** *
18890028 GAAAAAATTTTATAAAATCTCGAACCGT-AAAAAGTTTTGAAAATCGTGAAAAATAA
833 GAAAAAATTTTAAAAAATCTCGAACCGTCAAAAAGTTTCAAAAATCGTGAAAAATAG
* * *
18890084 AAAACGAGTCGTCTTGCCATGAAGCTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAT
1 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
** *
18890149 GCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATC
66 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * **
18890214 GATCCACGGC-TGCGCATCCTGCCTCTCTGGTCGGCGTAGTGCCTGCCCGCCTACCCGCTCGTTT
131 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTT
* * ** * ** *
18890278 CGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAATATTGGACCAGACCGATAGTTGTG
196 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCG
* ** * *
18890343 GCAGCAGGATCGACAGCACATAGAGGGGGACCCGGTAAATCCCCGGCTTACGCATCTCGCCCCTC
261 GCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * *
18890408 TGGCTGGCTAAGCACCCGCACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCCAG
326 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * *
18890473 TCTAAGCATACGGAGTTCATTCCCAGTATAAGATTGGATCGGACCGAGGGTTACAGCAGCACATG
391 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATG
* * * * * *
18890538 CTGGGCTCGAGCATGTGCTGGAGCCGTATTTTTCTTCATCG-GGACACCATCGCCGAAGCATCGC
456 CTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGG-CACCATC-TCGGAGCATCGT
** * *
18890602 CGGAGAACCTGACCGATGGCGTTGGGGTTTC-AGCGATCGGGGGGCCGGGGGGTGTGCGCACATG
519 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGTGTGCGCACATG
18890666 ATGTGCGATGGAGTGCTGGTAC-TGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
583 ATGTGCGATGG-GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
18890729 ACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCAATTAAAGTGTC
647 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC-----CA--G--
* *
18890792 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAAGT
703 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
18890857 TTTTTGTGCATGCCAACAAAAATACAAGGATGACGTCCACCAAGTTTGGGGCCAAAACTCCCATT
768 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CC-TT
* *
18890922 --GAAAAAATTTTATAAAATCTCGAACCGT-AAAAGGTTTCAAAAATCGTGAAAAATAG
831 CCGAAAAAATTTTAAAAAATCTCGAACCGTCAAAAAGTTTCAAAAATCGTGAAAAATAG
*
18890978 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAA
1 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
18891043 GCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
66 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * * *
18891108 GATCCACGGCTTACACAACCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGTCCGCCCGCTCGTTT
131 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTT
* * * * * * *
18891173 CATCGATTGGCTTAGGCATACAGAGTTCATTCCCACTCTAAGATCAGACCAGACCAAGGGTTGCT
196 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCG
* * * * * *
18891238 GTAGTAGGATCGGCAGCACATAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCTCCTC
261 GCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTC
* *
18891303 TGGCCGGTTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
326 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
*
18891368 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GACAGCACAT
391 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAG-CAGCACAT
** * ** * *
18891432 AATGGGCTCGGGCATGTGCTGGTGCCGCACGTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGT
455 GCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCTC-GGAGCATCGT
** * *
18891497 CGGAGAACCTGACCGATGGCATTGGGGTTCCGACGAT--------CGGGGGGTGTGCTCACATGG
519 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGA
* * *
18891554 TGTGCAATGAGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAAC
584 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
18891619 TCACACCCCCTTAAAGAGCATTGGGGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
649 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-----A--G--TG
18891684 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
705 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
18891749 TTTGTGCATGCCAA-AAAAAGTACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCG
770 TTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * *
18891813 AAAAAATTTTAAAAAA-CCCTGAACCGT-AAAAAGTTTTAAAAATCGTGAAAAATAA
834 AAAAAATTTTAAAAAATCTC-GAACCGTCAAAAAGTTTCAAAAATCGTGAAAAATAG
* *
18891868 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGACGGCTTAAGGGACCATTGTATGAATTTACAT
1 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
** *
18891933 GCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATC
66 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * * *
18891998 GATCCACGAC-TGCACATCCCGCCTCTCTAGCCGACGTAGT--------GCCCGTCCGCTCGTTT
131 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTT
* * * * *
18892054 CGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAATATCGGACCAGATCGAGAGTTGTG
196 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCG
* * **
18892119 GCAGCAGGATCGACAACACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTACCCCTC
261 GCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * *
18892184 TGGCCGACTGAGCCCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
326 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* *
18892249 TCTAAGCTTACGGAGTTCATCTAAGCTTACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCG
391 --T---C-TA---AG-----C--A---TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
*
18892314 AGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG-CTAGGAC
437 AGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGG-C
* *
18892378 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATC-GGGGGCC
501 ACCATC-TCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC
18892442 -GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
565 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
18892506 CTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
630 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
18892570 GTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
695 GTAGC-----CA--G--TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
18892635 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCCACCAAGTTTG
751 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* *
18892700 GGGCCAAAAATCCTTTCCGAAAAAATTTTATAAAATCTCGAACCGT-AAAAAGTTTCAAAAATCG
816 GGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAAATCTCGAACCGTCAAAAAGTTTCAAAAATCG
18892764 TGAAAAATAG
880 TGAAAAATAG
*
18892774 AAAACGAGTCGTCTTGCCATGAAACTTCCCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
1 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * *
18892839 GCCATAAAAATGGCATTGGTATGCAGAAATATAAAGATGTGCCTAAACCCACCTACTACCCTATC
66 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
18892904 GATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCACCCGCCGCCCACTCGT
131 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC-CGC-CCGCCCGCTCGT
* * * *
18892969 TTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGA-CTGAGGGTT
194 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTT
* * *
18893033 GCAGCAGCAGGATCGATAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCC-ACC
258 GCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCC
*
18893097 CTCTGGCCGGCTTAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
323 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* * *
18893162 CAG--T---C-TA---A----A-----A-TC--AGA-CTG----GACCGAGGGTTGCGGCAGCTC
388 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAC
* ** * *
18893201 ATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCATCGGAGCATC
453 ATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATC-TCGGAGCATC
*
18893266 GTCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACAT
517 GTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACAT
* *
18893331 GATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGA
582 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
18893396 ACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTC
647 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-----A--G--
* * * * *
18893461 TGAAAT-AGGACACTTTTTTCAAATGGTCACAAAATCTTGCACA-ATCCAGTTTTTAGCTGAAGT
703 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
18893524 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
768 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
18893562 GTCATAATGT
Statistics
Matches: 10451, Mismatches: 1267, Indels: 1201
0.81 0.10 0.09
Matches are distributed among these distances:
809 10 0.00
810 26 0.00
811 377 0.04
812 4 0.00
813 10 0.00
814 6 0.00
815 4 0.00
816 4 0.00
817 2 0.00
818 7 0.00
819 6 0.00
820 2 0.00
821 3 0.00
822 4 0.00
823 8 0.00
824 4 0.00
825 2 0.00
826 12 0.00
827 6 0.00
828 6 0.00
829 21 0.00
830 18 0.00
831 12 0.00
832 2 0.00
833 5 0.00
834 9 0.00
835 4 0.00
838 2 0.00
839 3 0.00
840 3 0.00
841 8 0.00
842 17 0.00
843 43 0.00
844 54 0.01
845 32 0.00
846 23 0.00
847 27 0.00
848 18 0.00
849 66 0.01
850 6 0.00
851 111 0.01
852 62 0.01
853 102 0.01
854 184 0.02
855 47 0.00
856 6 0.00
857 7 0.00
859 37 0.00
860 61 0.01
861 283 0.03
862 25 0.00
863 37 0.00
864 36 0.00
865 182 0.02
866 47 0.00
867 12 0.00
868 157 0.02
869 7 0.00
870 13 0.00
871 126 0.01
872 83 0.01
873 160 0.02
874 542 0.05
875 153 0.01
876 37 0.00
877 44 0.00
878 222 0.02
879 199 0.02
880 77 0.01
881 353 0.03
882 71 0.01
883 2 0.00
884 100 0.01
885 92 0.01
886 529 0.05
887 236 0.02
888 265 0.03
889 304 0.03
890 527 0.05
891 110 0.01
892 83 0.01
893 30 0.00
894 652 0.06
895 455 0.04
896 86 0.01
897 302 0.03
898 82 0.01
899 3 0.00
900 136 0.01
901 475 0.05
902 135 0.01
905 166 0.02
906 269 0.03
907 30 0.00
908 2 0.00
909 3 0.00
911 5 0.00
912 1 0.00
913 3 0.00
914 12 0.00
916 67 0.01
917 119 0.01
919 9 0.00
920 1 0.00
921 1 0.00
922 4 0.00
923 2 0.00
924 1 0.00
925 2 0.00
926 1 0.00
927 3 0.00
928 1 0.00
929 2 0.00
934 8 0.00
935 9 0.00
936 8 0.00
938 8 0.00
939 10 0.00
941 7 0.00
942 7 0.00
943 8 0.00
948 2 0.00
949 1 0.00
950 3 0.00
951 1 0.00
952 3 0.00
953 1 0.00
954 2 0.00
955 5 0.00
956 1 0.00
957 1 0.00
958 10 0.00
963 11 0.00
964 3 0.00
966 6 0.00
967 1 0.00
968 3 0.00
969 1 0.00
970 2 0.00
972 1 0.00
975 2 0.00
976 15 0.00
977 18 0.00
978 182 0.02
979 183 0.02
980 50 0.00
981 73 0.01
982 136 0.01
983 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCG
GCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTC
TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATG
CTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCTCGGAGCATCGTCG
GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
AAAATCTCGAACCGTCAAAAAGTTTCAAAAATCGTGAAAAATAG
Found at i:18882553 original size:26 final size:26
Alignment explanation
Indices: 18882517--18882569 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18882507 GTTGACTTAG
18882517 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
18882543 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
18882569 G
1 G
18882570 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:18886135 original size:25 final size:27
Alignment explanation
Indices: 18886083--18886135 Score: 83
Period size: 25 Copynumber: 2.0 Consensus size: 27
18886073 GTTGACTTAG
18886083 GCATACGGAGTTTCATTCCCAGTCTAA
1 GCATACGGAGTTTCATTCCCAGTCTAA
*
18886110 GCATATGGAG-TTCATT-CCAGTCTAA
1 GCATACGGAGTTTCATTCCCAGTCTAA
18886135 G
1 G
18886136 ATCAGACGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 10 0.40
26 6 0.24
27 9 0.36
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (27 bp):
GCATACGGAGTTTCATTCCCAGTCTAA
Found at i:18887853 original size:26 final size:26
Alignment explanation
Indices: 18887823--18887875 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18887813 GTTGACTTAG
18887823 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18887849 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18887875 G
1 G
18887876 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18889616 original size:26 final size:26
Alignment explanation
Indices: 18889578--18889630 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18889568 GTTGACTTAG
**
18889578 GCATACGTTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18889604 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18889630 G
1 G
18889631 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18890483 original size:26 final size:26
Alignment explanation
Indices: 18890452--18890504 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18890442 GTTGACTTAG
*
18890452 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
18890478 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
18890504 G
1 G
18890505 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:18891370 original size:895 final size:894
Alignment explanation
Indices: 18888710--18893560 Score: 6616
Period size: 874 Copynumber: 5.5 Consensus size: 894
18888700 GTTGACTTAG
* * * * *
18888710 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG-TGACAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAG-CAGCACATGCTGG
* * ** * * *
18888774 GCTCGGGCATGAGCTGGTGCCGCACGTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGTCGGAGCATCGCCGGAG
*
18888839 AACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGCC-GGGGGTGTGCGCACATGATGTGC
130 AACCTGACCGGCGGCATTGGGGTT-CGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
18888903 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT--CA
*
18888967 CACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
257 CACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
18889032 GGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTG
* * *
18889096 TGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAC-CCTTCTAAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAA
* * * * * *
18889159 TTTTAAAAAAATCCCAAACCGAAAAAAGTTTTGAAAAATCGTGAAAAATAGAAAACGAGTCATCT
452 TTTT-ATAAAATCTCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
18889224 TGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGGATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
**
18889288 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
580 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
18889353 GCAT-CCGTCATCTCTGGCCGACGTAGTGCCCGCCCGTCGGCCCGCTCGTTTCGTC-AGTTGGCT
645 GCATCCCGTC-TCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTCGTTTCGTCGA-TTGGCT
* * * * *
18889416 TAGGCATACGGAGTTCATTTCGAGTCTAATATTGGACCAGACTGATAGTTGTGGCAGCAGGATCG
708 TAGGCATACGGAGTTCATTCCCAGTCTAATATCGGACCAGACCGAGAGTTGTGGCAGCAGGATCG
* * * *
18889481 ACAACACATAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCTCGCCTCTCTGGCCGACTGAG
773 ACAGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCC-CTCTGGCCGGCTGAG
* * * **
18889546 CGCTCGCACGCTCGCTTCGTGGGTTGACTTAGGCATACGTTGTTCATTCCCAGTCTAA
837 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
18889604 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGATCGAGGGATGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* * * *
18889669 CTCGAGCGTGTGCTGGAGCCGCATTTTTCTTCGTCGGGACACCATCG-CTAGAGCATCACCGGAG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGTC-GGAGCATCGCCGGAG
* * * * * *
18889733 AACCTGACTGGCGGCATTAGGGTTTTGACGATTGGGGGGCCGAGGGGTGTGTGCACATGATGTGC
130 AACCTGACCGGCGGCATT-GGGGTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
18889798 GATGGGTGTTGGTACTTGGCCCTTATATTGG--------CCC-CATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
18889854 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCAATTAAAGTGTATGAAATAG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGG
* * *
18889919 GGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTG
18889984 CATGCCAACAAAAATACAA-G-----G-------AGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
389 CATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAAT
** *
18890036 TTTATAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGC
453 TTTATAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * *
18890101 CATGAAGCTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
18890166 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGC-TGCGCA
583 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * *
18890230 TCCTGCCTCTCTGGTCGGCGTAGTGCCTGCCCG-CCTACCCGCTCGTTTCGTCGGTTGGCTTAGG
648 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCC-GCCCGCTCGTTTCGTCGATTGGCTTAGG
* * *
18890294 CATACGGAGTTTATTCCCAGTCTAATATTGGACCAGACCGATAGTTGTGGCAGCAGGATCGACAG
712 CATACGGAGTTCATTCCCAGTCTAATATCGGACCAGACCGAGAGTTGTGGCAGCAGGATCGACAG
** * * * * *
18890359 CACATAGAGGGGGACCCGGTAAATCCCCGGCTTACGCATCTCGCCCCTCTGGCTGGCTAAGCACC
777 CACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCGGCTGAGCGCC
*
18890424 CGCACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
18890478 GCATACGGAGTTCATTCCCAGTATAAGATTGGATCGGACCGAGGGTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* * * * *
18890543 CTCGAGCATGTGCTGGAGCCGTATTTTTCTTCATCGGGACACCATCGCCGAAGCATCGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGTCGGAGCATCGCCGGAGA
** *
18890608 ACCTGACCGATGGCGTTGGGGTTTC-AGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGG-TTCGA-CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
18890672 GATGGAGTGCTGGTAC-TGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 GATGG-GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
18890735 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCAATTAAAGTGTCTGAAATG
258 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
*
18890799 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAAGTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGT
*
18890864 GCATGCCAACAAAAATACAAGGATGACGTCCACCAAGTTTGGGGCCAAAACTCCCATT-GAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACT-CC-TTCGAAAAA
*
18890928 ATTTTATAAAATCTCGAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
451 ATTTTATAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
18890993 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
18891058 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACA
581 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
18891123 CAACCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGTCCGCCCGCTCGTTTCATCGATTGGCTTAG
646 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTCGTTTCGTCGATTGGCTTAG
* * * * * * * * *
18891188 GCATACAGAGTTCATTCCCACTCTAAGATCAGACCAGACCAAGGGTTGCT-GTAGTAGGATCGGC
711 GCATACGGAGTTCATTCCCAGTCTAATATCGGACCAGACCGAGAGTTG-TGGCAGCAGGATCGAC
* *
18891252 AGCACATAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCTCCTCTGGCCGGTTGAGCG
775 AGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGC-CCTCTGGCCGGCTGAGCG
*
18891317 CCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
18891373 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GACAGCACATAATGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAG-CAGCACATGCTGG
* ** * *
18891437 GCTCGGGCATGTGCTGGTGCCGCACGTTTCTTCGTCGGGGCACCATCG-CTGGAGCATCGTCGGA
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGTC-GGAGCATCGCCGGA
** * *
18891501 GAACCTGACCGATGGCATTGGGGTTCCGACGAT--------CGGGGGGTGTGCTCACATGGTGTG
129 GAACCTGACCGGCGGCATTGGGGTT-CGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
18891558 CAATGAGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
18891623 ACCCCCTTAAAGAGCATTGGGGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
*
18891688 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTG
* *
18891753 TGCATGCCAA-AAAAAGTACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAA
387 TGCATGCCAACAAAAA-TACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCC-TTCGAAAA
* * * *
18891817 AATTTTA-AAAAACCCTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTC
450 AATTTTATAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
18891881 TTGCCATGAAACTTCACGTGACGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
18891946 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCACGAC-TG
579 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
18892010 CACATCCCGCCTCTCTAGCCGACGTAGT----GCCCGT----CCGCTCGTTTCGTTGGTTGGCTT
644 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTCGTTTCGTCGATTGGCTT
*
18892067 AGGCATACGGAGTTCATTCCCAGTCTAATATCGGACCAGATCGAGAGTTGTGGCAGCAGGATCGA
709 AGGCATACGGAGTTCATTCCCAGTCTAATATCGGACCAGACCGAGAGTTGTGGCAGCAGGATCGA
* *
18892132 CAACACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTAC-CCCTCTGGCCGACTGAG
774 CAGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCC--CGCCCTCTGGCCGGCTGAG
* * *
18892196 CCCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTTACG
837 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA--
18892261 GA
894 -A
*
18892263 GTTCATCTAAGCTTACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGC
1 G-----C--A---TACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGC
*
18892328 ACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG-CTAGGACACCATCGTCGGAGC
56 ACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGACACCATCGTCGGAGC
18892392 ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATC-GGGGGCC-GGGGGTGTGCGCA
120 ATCGCCGGAGAACCTGACCGGCGGCATTGGGG-TTCGACGATCGGGGGGCCGGGGGGTGTGCGCA
18892455 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
184 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
18892520 AGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTG
249 AGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTG
18892585 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
314 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * *
18892650 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCCACCAAGTTTGGGGCCAAAAATCCTT
379 GTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCC-T
18892715 TCCGAAAAAATTTTATAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
443 T-CGAAAAAATTTTATAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
*
18892780 AGTCGTCTTGCCATGAAACTTCCCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
507 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* ** * *
18892845 AAAATGGCATTGGTATGCAGAAATATAAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCA
572 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * *
18892910 CGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCACCCG-CCGCCCACTCGTTTCGT
637 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG---CCCGTCCGCCCGCTCGTTTCGT
* * * * * * * **
18892974 C-AGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACTGAGGGTTGCAGC
699 CGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAATATCGGACCAGACCGAGAGTTGTGGC
* * *
18893038 AGCAGGATCGATAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCTCTGG
763 AGCAGGATCGACAGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCTCTGG
*
18893103 CCGGCTTAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T
828 CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
18893166 --
893 AA
* * *
18893166 -C-TA---A----A-----A-TC--AGA-C---T-GGACCGAGGGTTGCGGCAGCTCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* ** * * * *
18893209 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGTCGGAGCATCGCCGGAGA
*
18893274 ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTT-CGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
18893339 ATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-
* ** *
18893404 CCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAAT-A
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGG
* * *
18893468 GGACACTTTTTTCAAATGGTCACAAAATCTTGCACA-ATCCAGTTTTTAGCTGAAGTTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTG
18893532 CATGCCAACAAAAATACAAGGATCACGTC
389 CATGCCAACAAAAATACAAGGATCACGTC
18893561 TGTCATAATG
Statistics
Matches: 3532, Mismatches: 313, Indels: 246
0.86 0.08 0.06
Matches are distributed among these distances:
870 2 0.00
871 111 0.03
872 62 0.02
873 142 0.04
874 517 0.15
875 130 0.04
876 14 0.00
878 2 0.00
879 1 0.00
880 2 0.00
881 285 0.08
882 61 0.02
883 2 0.00
884 1 0.00
885 77 0.02
886 92 0.03
887 45 0.01
888 45 0.01
889 74 0.02
890 311 0.09
891 2 0.00
893 1 0.00
894 344 0.10
895 406 0.11
896 6 0.00
897 2 0.00
899 1 0.00
900 136 0.04
901 4 0.00
905 172 0.05
906 263 0.07
907 32 0.01
908 1 0.00
911 1 0.00
914 4 0.00
915 1 0.00
916 65 0.02
917 115 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTT
ATAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAATATCGGACCAGACCGAGAGTTGTGGCAGCAGGATCGACAGCACA
TAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:18891377 original size:26 final size:26
Alignment explanation
Indices: 18891347--18891399 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18891337 GTTGACTTAG
18891347 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18891373 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18891399 G
1 G
18891400 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18892267 original size:26 final size:26
Alignment explanation
Indices: 18892231--18892299 Score: 89
Period size: 19 Copynumber: 2.9 Consensus size: 26
18892221 GACTTAGGCA
18892231 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
18892257 TACGGAG----TT--CA-TCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
18892276 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
18892300 ATCGGATCGG
Statistics
Matches: 36, Mismatches: 0, Indels: 14
0.72 0.00 0.28
Matches are distributed among these distances:
19 15 0.42
20 2 0.06
22 2 0.06
23 2 0.06
25 2 0.06
26 13 0.36
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:18892824 original size:906 final size:902
Alignment explanation
Indices: 18891368--18893169 Score: 2726
Period size: 906 Copynumber: 2.0 Consensus size: 902
18891358 TCATTCCCAG
18891368 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATA
1 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATA
* * * *
18891433 ATGGGCTCGGGCATGTGCTGGTGCCGCACGTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTC
66 ATGGGCTCGAGCATGTGCTGGTGCCGCACGTTTCTTCGTCAGGACACCATCGCTGGAGCATCGCC
* * *
18891498 GGAGAACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGTGTGCTCACATGGTGTGCAATG
131 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGTGTGCGCACATGATGTGCAATG
*
18891563 AGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACCCC
196 AGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
18891628 CTTAAAGAGCATTGGGGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
261 CTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGA
18891693 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
326 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
18891758 GCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAAAATTTT
391 GCCAAAAAAAGTACAAGGATCACGTCCACCAAGTTTGGGACCAAAAATCCTTTCGAAAAAATTTT
*
18891823 AAAAAACCCTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCAT
456 AAAAAACCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCAT
* *
18891888 GAAACTTCACGTGACGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGC
521 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
18891953 ACATAGAAATATGAAGATGTGCCTAAACCCACCTAGC-ACCCTATCGATCCACGAC-TGCACATC
586 ACACAGAAATATAAAGATGTGCCTAAACCCACCTA-CTACCCTATCGATCCACGACTTACACATC
* **
18892016 CCGCCTCTCTAGCCGACGTAGTGCCCG-TCCG-CTCGTTTCGTTGGTTGGCTTAGGCATACGGAG
650 CCGCCTCTCTAGCCGACGTAGTGCCCGCGCCGCCTCGTTTCGTCAGTTGGCTTAGGCATACGGAG
* * * **
18892079 TTCATTCCCAGTCTAATATCGGACCAGA-TCGAGAGTTGTGGCAGCAGGATCGACAACACATAGA
715 TTCATTCCCAATCTAAGATCAGACCAGACT-GAGAGTTGCAGCAGCAGGATCGACAACACATAGA
* *
18892143 GGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTACCCCTCTGGCCGACTGAGCCCCCGCACGTT
779 GGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCA-CCCTCTGGCCGACTGAGCCCCCGCACGCT
*
18892208 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTTACGGAGTTCA
843 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTTACGGAGTTCA
* * * *
18892268 TCTAAGCTTACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGC-AGCAGCACAT
1 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA-CAGCACAT
** **
18892332 GCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG-CTAGGACACCATCG-TCGGAGCATC
65 AATGGGCTCGAGCATGTGCTGGTGCCGCACGTTTCTTCGTC-AGGACACCATCGCT-GGAGCATC
* *
18892395 GCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGCCGGGGGTGTGCGCACATGA
128 GCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC----G--GGGGGTGTGCGCACATGA
* *
18892460 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
187 TGTGCAATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
18892525 TCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTG
252 TCACACCCCCTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTG
18892589 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
317 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
18892654 TTTGTGCATGCCAACAAAAA-TACAAGGATCATGTCCACCAAGTTTGGGGCCAAAAATCCTTTCC
382 TTTGTGCATGCCAA-AAAAAGTACAAGGATCACGTCCACCAAGTTTGGGACCAAAAATCCTTT-C
* * *
18892718 GAAAAAATTTTATAAAA-TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
445 GAAAAAATTTTAAAAAACCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAG
*
18892782 TCGTCTTGCCATGAAACTTCCCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
509 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* **
18892847 AATGGCATTGGTATGCAGAAATATAAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACG
574 AATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACG
* * * * *
18892912 GCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCACCCGCCGCCCACTCGTTTCGTCAG
639 ACTTACACATCCCGCCTCTCTAGCCGACGTAGTGCCCG-----CGCCG--C-CTCGTTTCGTCAG
* * *
18892977 TTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACTGAGGGTTGCAGCAGCA
696 TTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGAGTTGCAGCAGCA
* * * *
18893042 GGATCGATAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCTCTGGCCGG
761 GGATCGACAACACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCTCTGGCCGA
* *
18893107 CTTAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
826 CTGAGCCCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
18893170 AATCAGACTG
Statistics
Matches: 811, Mismatches: 66, Indels: 34
0.89 0.07 0.04
Matches are distributed among these distances:
899 3 0.00
900 146 0.18
904 1 0.00
905 175 0.22
906 267 0.33
907 30 0.04
913 3 0.00
916 70 0.09
917 115 0.14
918 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATA
ATGGGCTCGAGCATGTGCTGGTGCCGCACGTTTCTTCGTCAGGACACCATCGCTGGAGCATCGCC
GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGTGTGCGCACATGATGTGCAATG
AGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAAAAAAAGTACAAGGATCACGTCCACCAAGTTTGGGACCAAAAATCCTTTCGAAAAAATTTT
AAAAAACCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACACAGAAATATAAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGACTTACACATCC
CGCCTCTCTAGCCGACGTAGTGCCCGCGCCGCCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGT
TCATTCCCAATCTAAGATCAGACCAGACTGAGAGTTGCAGCAGCAGGATCGACAACACATAGAGG
GGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCTCTGGCCGACTGAGCCCCCGCACGCTCGT
TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTTACGGAGTTCA
Found at i:18894170 original size:60 final size:60
Alignment explanation
Indices: 18894039--18894462 Score: 524
Period size: 60 Copynumber: 7.0 Consensus size: 60
18894029 TCTTGTGTAG
* * *
18894039 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTGGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATTTTTTTTTTTGGAAA-TTTTATTTTTAA
***
18894101 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTT-GAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATTTTTTTTTTTGGAAATTTTATTTTTAA
* * *
18894161 GGAAAATTGATACTTTCAACTTTTCCCTAAAAA--TATTTTTCTGGAAA-TTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATTTTTTTTTTTGGAAATTTTATTTTTAA
* *
18894219 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTTTGGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAA--TTTTTTTTTTTGGAAA-TTTTATTTTTAA
* *
18894283 GGAAAATTGATACTTTCAACTTTTCCCTAAAAA-TATTTTTTTTGGAAA-TTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATTTTTTTTTTTGGAAATTTTATTTTTAA
*
18894342 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTTTTT--AAA-CTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAAT--TTTTTTTTTTGGAAATTTTATTTTTAA
*
18894402 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATTTTTTTTTTTGGAAATTTT-ATTTTTA
18894463 TTTAAAGAAA
Statistics
Matches: 319, Mismatches: 23, Indels: 40
0.84 0.06 0.10
Matches are distributed among these distances:
58 54 0.17
59 48 0.15
60 89 0.28
61 22 0.07
62 66 0.21
63 3 0.01
64 37 0.12
ACGTcount: A:0.32, C:0.13, G:0.09, T:0.46
Consensus pattern (60 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATTTTTTTTTTTGGAAATTTTATTTTTAA
Found at i:18894200 original size:122 final size:120
Alignment explanation
Indices: 18894039--18894453 Score: 622
Period size: 122 Copynumber: 3.4 Consensus size: 120
18894029 TCTTGTGTAG
* *
18894039 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTGGAAACTTTGATTT-TCAAGG
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAT-ATTTTTTTTGGAAA-TTT-ATTTCT-AAGG
* *
18894103 AAAATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTTTTTGAAATTTTATTTTTAA
62 AAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTTTTGAAATTTTATTTTTAA
*
18894161 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTCTGGAAATTTATTTCTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTATTTCTAAGGAAAA
* ** * *
18894225 TTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTTTGGAAACTTTGATTTTCAA
66 TTGATACTTTCAACTTTTCCTCAAAAAT-ACTTTTTTTTT-GAAA-TTTTATTTTTAA
18894283 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTATTTCTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTATTTCTAAGGAAAA
* *
18894348 TTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTTTTTAAA-CTTATTTTTAA
66 TTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTTTTGAAATTTTATTTTTAA
18894402 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAAATTT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTTGGAAATTT
18894454 TGATTTTTAT
Statistics
Matches: 269, Mismatches: 17, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
118 38 0.14
119 47 0.17
120 35 0.13
121 7 0.03
122 87 0.32
123 55 0.20
ACGTcount: A:0.32, C:0.13, G:0.09, T:0.46
Consensus pattern (120 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTATTTCTAAGGAAAA
TTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTTTTGAAATTTTATTTTTAA
Found at i:18894505 original size:6 final size:6
Alignment explanation
Indices: 18894480--18894552 Score: 55
Period size: 6 Copynumber: 12.3 Consensus size: 6
18894470 AAAACAGAAT
* * *
18894480 AATAAA AA-AATA AATAAA AATTAAA AA-AATA AAGAAA AGT-AA AACAAA
1 AATAAA AATAA-A AATAAA AA-TAAA AATAA-A AATAAA AATAAA AATAAA
*
18894528 AATAAA AAT-AA AATAAA GATAAA AA
1 AATAAA AATAAA AATAAA AATAAA AA
18894553 GAATATTAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 14
0.72 0.09 0.19
Matches are distributed among these distances:
5 12 0.23
6 31 0.58
7 10 0.19
ACGTcount: A:0.79, C:0.01, G:0.04, T:0.15
Consensus pattern (6 bp):
AATAAA
Found at i:18894506 original size:19 final size:18
Alignment explanation
Indices: 18894480--18894540 Score: 79
Period size: 19 Copynumber: 3.4 Consensus size: 18
18894470 AAAACAGAAT
18894480 AATAAAAAAATAAATAAA
1 AATAAAAAAATAAATAAA
*
18894498 AATTAAAAAAATAAAGAAA
1 AA-TAAAAAAATAAATAAA
* *
18894517 AGTAAAACAA-AAATAAA
1 AATAAAAAAATAAATAAA
18894534 AATAAAA
1 AATAAAA
18894541 TAAAGATAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
17 12 0.32
18 9 0.24
19 16 0.43
ACGTcount: A:0.80, C:0.02, G:0.03, T:0.15
Consensus pattern (18 bp):
AATAAAAAAATAAATAAA
Found at i:18894552 original size:17 final size:17
Alignment explanation
Indices: 18894480--18894552 Score: 65
Period size: 17 Copynumber: 4.1 Consensus size: 17
18894470 AAAACAGAAT
*
18894480 AATAAAAAAATAAATAAA
1 AATAAAATAA-AAATAAA
* *
18894498 AATTAAAAAAATAAAGAAA
1 AA-TAAAATAA-AAATAAA
* *
18894517 AGTAAAACAAAAATAAA
1 AATAAAATAAAAATAAA
*
18894534 AATAAAATAAAGATAAA
1 AATAAAATAAAAATAAA
18894551 AA
1 AA
18894553 GAATATTAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
17 22 0.47
18 9 0.19
19 16 0.34
ACGTcount: A:0.79, C:0.01, G:0.04, T:0.15
Consensus pattern (17 bp):
AATAAAATAAAAATAAA
Found at i:18894554 original size:40 final size:41
Alignment explanation
Indices: 18894465--18894562 Score: 102
Period size: 36 Copynumber: 2.5 Consensus size: 41
18894455 GATTTTTATT
* *
18894465 TAAAGA-AAACAGAATAATAAAAAAATAAATAAAAATTAAA
1 TAAAGATAAAAAGAATAATAAAAAAATAAATAAAAATAAAA
*
18894505 -AAA-AT--AAAGAA-AAGTAAAACAA-AAATAAAAATAAAA
1 TAAAGATAAAAAGAATAA-TAAAAAAATAAATAAAAATAAAA
*
18894541 TAAAGATAAAAAGAATATTAAA
1 TAAAGATAAAAAGAATAATAAA
18894563 TAAACCTAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
36 15 0.32
37 15 0.32
38 3 0.06
39 3 0.06
40 10 0.21
41 1 0.02
ACGTcount: A:0.76, C:0.02, G:0.06, T:0.16
Consensus pattern (41 bp):
TAAAGATAAAAAGAATAATAAAAAAATAAATAAAAATAAAA
Found at i:18895855 original size:10 final size:10
Alignment explanation
Indices: 18895841--18895897 Score: 71
Period size: 10 Copynumber: 5.5 Consensus size: 10
18895831 ACATTGTCAT
18895841 TTTTTGTTTTG
1 TTTTT-TTTTG
18895852 TTTTGTGTTTT-
1 TTTT-T-TTTTG
*
18895863 TTTTTTGTTG
1 TTTTTTTTTG
18895873 TTTTTTTTTG
1 TTTTTTTTTG
18895883 TTTTTTTTTG
1 TTTTTTTTTG
18895893 TTTTT
1 TTTTT
18895898 GACCAAAGCT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
9 3 0.07
10 25 0.60
11 8 0.19
12 6 0.14
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:18895868 original size:13 final size:12
Alignment explanation
Indices: 18895840--18895891 Score: 70
Period size: 12 Copynumber: 4.3 Consensus size: 12
18895830 AACATTGTCA
*
18895840 TTTTTTGTTTTG
1 TTTTTTGTTTTT
*
18895852 TTTTGTG-TTTT
1 TTTTTTGTTTTT
18895863 TTTTTTGTTGTTT
1 TTTTTTGTT-TTT
18895876 TTTTTTGTTTTT
1 TTTTTTGTTTTT
18895888 TTTT
1 TTTT
18895892 GTTTTTGACC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
11 9 0.26
12 14 0.40
13 12 0.34
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (12 bp):
TTTTTTGTTTTT
Found at i:18895870 original size:23 final size:22
Alignment explanation
Indices: 18895840--18895896 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 22
18895830 AACATTGTCA
18895840 TTTTTTGTTTTGTTTTGTGTTTT
1 TTTTTTGTTTTGTTTTGTG-TTT
* *
18895863 TTTTTTGTTGTTTTTTTTTGTTT
1 TTTTTTGTT-TTGTTTTGTGTTT
18895886 TTTTTTGTTTT
1 TTTTTTGTTTT
18895897 TGACCAAAGC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
22 2 0.06
23 21 0.68
24 8 0.26
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (22 bp):
TTTTTTGTTTTGTTTTGTGTTT
Found at i:18895874 original size:14 final size:14
Alignment explanation
Indices: 18895847--18895891 Score: 60
Period size: 13 Copynumber: 3.4 Consensus size: 14
18895837 TCATTTTTTG
*
18895847 TTTTGTTTTG-TGT
1 TTTTTTTTTGTTGT
18895860 TTTTTTTTTGTTG-
1 TTTTTTTTTGTTGT
18895873 TTTTTTTTTGTT-T
1 TTTTTTTTTGTTGT
18895886 TTTTTT
1 TTTTTT
18895892 GTTTTTGACC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 27 0.93
14 2 0.07
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (14 bp):
TTTTTTTTTGTTGT
Found at i:18895881 original size:26 final size:24
Alignment explanation
Indices: 18895840--18895896 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 24
18895830 AACATTGTCA
18895840 TTTTTTGTTTTGTTTTGTGTTTTTT
1 TTTTTTGTTTTGTTTTGT-TTTTTT
*
18895865 TTTTGTTGTTTTTTTTTGTTTTTTT
1 TTTT-TTGTTTTGTTTTGTTTTTTT
18895890 TTGTTTT
1 TT-TTTT
18895897 TGACCAAAGC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 14 0.48
26 15 0.52
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (24 bp):
TTTTTTGTTTTGTTTTGTTTTTTT
Found at i:18895998 original size:41 final size:41
Alignment explanation
Indices: 18895905--18896157 Score: 429
Period size: 41 Copynumber: 6.1 Consensus size: 41
18895895 TTTGACCAAA
18895905 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAA-TAAATT
18895947 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
* *
18895988 GCTCCTCTAAACAGAGGCAACACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
*
18896029 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
18896070 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
*
18896111 GCTCCTCTAAACAGAGGCA--ACGGAACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCAC-G-ACTTTGGAAAATAAATT
18896152 GCTCCT
1 GCTCCT
18896158 TGACAATCAT
Statistics
Matches: 204, Mismatches: 5, Indels: 5
0.95 0.02 0.02
Matches are distributed among these distances:
39 2 0.01
40 1 0.00
41 166 0.81
42 35 0.17
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
Found at i:18896125 original size:123 final size:124
Alignment explanation
Indices: 18895905--18896157 Score: 474
Period size: 123 Copynumber: 2.0 Consensus size: 124
18895895 TTTGACCAAA
18895905 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
18895970 GACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCAACACG-ACTTTGGAAAGTAAATT
66 GACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCAAC-CGAACTTTGGAAAGTAAATT
18896029 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
18896093 GACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCAACGGAACTTTGGAAAGTAAATT
66 GACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCAACCGAACTTTGGAAAGTAAATT
18896152 GCTCCT
1 GCTCCT
18896158 TGACAATCAT
Statistics
Matches: 127, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
122 1 0.01
123 95 0.75
124 31 0.24
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (124 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
GACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCAACCGAACTTTGGAAAGTAAATT
Found at i:18897191 original size:8 final size:8
Alignment explanation
Indices: 18897180--18897249 Score: 54
Period size: 8 Copynumber: 8.6 Consensus size: 8
18897170 CACTTTTTCA
18897180 TTTTTATT
1 TTTTTATT
18897188 TTTTTATT
1 TTTTTATT
*
18897196 TTTTGATT
1 TTTTTATT
18897204 TTTTTCATCAT
1 TTTTT-AT--T
*
18897215 TTTTCATT
1 TTTTTATT
*
18897223 TTTTT-TC
1 TTTTTATT
*
18897230 TCTTT-TT
1 TTTTTATT
*
18897237 TTTTAATT
1 TTTTTATT
18897245 TTTTT
1 TTTTT
18897250 CAAGCATAGT
Statistics
Matches: 48, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
7 9 0.19
8 30 0.62
9 2 0.04
10 2 0.04
11 5 0.10
ACGTcount: A:0.11, C:0.07, G:0.01, T:0.80
Consensus pattern (8 bp):
TTTTTATT
Found at i:18897218 original size:41 final size:42
Alignment explanation
Indices: 18897161--18897251 Score: 125
Period size: 41 Copynumber: 2.2 Consensus size: 42
18897151 TGAGTCCTCC
*
18897161 TTTTTCAATCACTTTTTCATTTTTATTT-T-TTTATTTTTTGATT
1 TTTTTC-ATCACTTTTTCATTTTT-TTTCTCTTT-TTTTTTAATT
18897204 TTTTTCATCA-TTTTTCATTTTTTTTCTCTTTTTTTTTAATT
1 TTTTTCATCACTTTTTCATTTTTTTTCTCTTTTTTTTTAATT
18897245 TTTTTCA
1 TTTTTCA
18897252 AGCATAGTAC
Statistics
Matches: 45, Mismatches: 1, Indels: 6
0.87 0.02 0.12
Matches are distributed among these distances:
40 3 0.07
41 29 0.64
42 7 0.16
43 6 0.13
ACGTcount: A:0.14, C:0.11, G:0.01, T:0.74
Consensus pattern (42 bp):
TTTTTCATCACTTTTTCATTTTTTTTCTCTTTTTTTTTAATT
Found at i:18897227 original size:10 final size:10
Alignment explanation
Indices: 18897173--18897251 Score: 52
Period size: 10 Copynumber: 7.7 Consensus size: 10
18897163 TTTCAATCAC
18897173 TTTTTCATTT
1 TTTTTCATTT
**
18897183 TTATTTTTTTAT
1 TT-TTTCATT-T
*
18897195 TTTTTGA-TT
1 TTTTTCATTT
**
18897204 TTTTTCATCA
1 TTTTTCATTT
18897214 TTTTTCATTT
1 TTTTTCATTT
*
18897224 TTTTTCTCTTT
1 TTTTTC-ATTT
* *
18897235 TTTTTTAATT
1 TTTTTCATTT
18897245 TTTTTCA
1 TTTTTCA
18897252 AGCATAGTAC
Statistics
Matches: 51, Mismatches: 14, Indels: 8
0.70 0.19 0.11
Matches are distributed among these distances:
9 7 0.14
10 25 0.49
11 16 0.31
12 3 0.06
ACGTcount: A:0.13, C:0.09, G:0.01, T:0.77
Consensus pattern (10 bp):
TTTTTCATTT
Found at i:18907777 original size:58 final size:60
Alignment explanation
Indices: 18907648--18907825 Score: 209
Period size: 58 Copynumber: 2.9 Consensus size: 60
18907638 TTGTGTAGGA
* * * *
18907648 AAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTTGGAAACTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAA---TATTTTTCTGGAAAATTTGATTTTCAAGG
* *
18907711 AAAATTGATACTTGCAACTTTTTCCTAAAAATATTTTTCT-GAAAATTT-A-TTTCTAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTCTGGAAAATTTGATTTTC-AAGG
* *
18907769 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAAATTTTGATTTT
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATA--TTTTTCTGGAAAATTTGATTTT
18907826 TATTTAAAGA
Statistics
Matches: 99, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
57 4 0.04
58 36 0.36
59 7 0.07
60 13 0.13
61 7 0.07
62 1 0.01
63 31 0.31
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.46
Consensus pattern (60 bp):
AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTCTGGAAAATTTGATTTTCAAGG
Found at i:18907867 original size:6 final size:6
Alignment explanation
Indices: 18907845--18907915 Score: 60
Period size: 6 Copynumber: 12.3 Consensus size: 6
18907835 AAAACAGAAT
* * * *
18907845 AATAAA AA-AATA AATAAA AATAAA AA-ATA AAGAAA AGT-AA AACAAA
1 AATAAA AATAA-A AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
*
18907891 AATAAA AAT-AA AATAAA GATAAA AA
1 AATAAA AATAAA AATAAA AATAAA AA
18907916 GAATATTAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
5 14 0.27
6 35 0.69
7 2 0.04
ACGTcount: A:0.80, C:0.01, G:0.04, T:0.14
Consensus pattern (6 bp):
AATAAA
Found at i:18907869 original size:17 final size:17
Alignment explanation
Indices: 18907849--18907903 Score: 76
Period size: 17 Copynumber: 3.2 Consensus size: 17
18907839 CAGAATAATA
18907849 AAAAAATAAATAAAAAT
1 AAAAAATAAATAAAAAT
* *
18907866 AAAAAATAAAGAAAAGT
1 AAAAAATAAATAAAAAT
18907883 AAAACAA-AAATAAAAAT
1 AAAA-AATAAATAAAAAT
18907900 AAAA
1 AAAA
18907904 TAAAGATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
17 31 0.94
18 2 0.06
ACGTcount: A:0.82, C:0.02, G:0.04, T:0.13
Consensus pattern (17 bp):
AAAAAATAAATAAAAAT
Found at i:18907912 original size:17 final size:17
Alignment explanation
Indices: 18907858--18907915 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
18907848 AAAAAAATAA
18907858 ATAAAAATAAAAAATAAAG
1 ATAAAAAT--AAAATAAAG
* * *
18907877 --AAAAGTAAAACAAAA
1 ATAAAAATAAAATAAAG
18907892 ATAAAAATAAAATAAAG
1 ATAAAAATAAAATAAAG
18907909 ATAAAAA
1 ATAAAAA
18907916 GAATATTAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
15 7 0.23
17 24 0.77
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.14
Consensus pattern (17 bp):
ATAAAAATAAAATAAAG
Found at i:18907991 original size:15 final size:15
Alignment explanation
Indices: 18907842--18908004 Score: 59
Period size: 15 Copynumber: 10.5 Consensus size: 15
18907832 AAGAAAACAG
*
18907842 AATAATAAA-AAAATA
1 AATAA-AAATAAAAAA
18907857 AATAAAAATAAAAAA
1 AATAAAAATAAAAAA
*
18907872 TAA-AGAAAAGTAAAACA
1 -AATA-AAAA-TAAAAAA
* *
18907889 AA-AATAA-AAATAA
1 AATAAAAATAAAAAA
* *
18907902 AATAAAGATAAAAAG
1 AATAAAAATAAAAAA
* *
18907917 AATATTAAATAAACCTAA
1 AATA-AAAATAAA--AAA
**
18907935 TCTAATAAATAAAAAA
1 AATAA-AAATAAAAAA
18907951 AA-AACAAATAAGCAAATA
1 AATAA-AAATAA--AAA-A
*
18907969 AATGAAAATAAAAAA
1 AATAAAAATAAAAAA
*
18907984 AATTAAAA-AAAAAA
1 AATAAAAATAAAAAA
*
18907998 AAGAAAA
1 AATAAAA
18908005 CCTGAAGCGG
Statistics
Matches: 110, Mismatches: 24, Indels: 29
0.67 0.15 0.18
Matches are distributed among these distances:
13 6 0.05
14 17 0.15
15 38 0.35
16 20 0.18
17 9 0.08
18 19 0.17
19 1 0.01
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.16
Consensus pattern (15 bp):
AATAAAAATAAAAAA
Found at i:18908313 original size:20 final size:20
Alignment explanation
Indices: 18908275--18908314 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
18908265 CTCACCGGAT
*
18908275 TCTGGGTTTTGTCATCGAAA
1 TCTGGGTTTTGTCACCGAAA
* *
18908295 TCTGGGTTTTTTCGCCGAAA
1 TCTGGGTTTTGTCACCGAAA
18908315 GTTCATCGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.17, C:0.17, G:0.25, T:0.40
Consensus pattern (20 bp):
TCTGGGTTTTGTCACCGAAA
Found at i:18909123 original size:159 final size:159
Alignment explanation
Indices: 18908892--18909240 Score: 520
Period size: 159 Copynumber: 2.2 Consensus size: 159
18908882 ATCGATCGGA
* * * *
18908892 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGATAGTTACAGCAGCAAGATC
1 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGAGTTACAGCAGCAAGATC
* * * * * *
18908957 GGTAGCACGTAGAGGGAGACTCGACCGTTCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGA
66 AGCAGCACGTAGAGGGAGACCCGACCGATCCCCGACTTGCACATCCCACCCCTCTGGCCGGCTGA
18909022 GCGCCCGCACGCTCGTTTCGTGGGTTGAC
131 GCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * * *
18909051 TTAGGCATATGGAGTTCATTCACAGTCTAAGATCGGACCAGACCAAGGGTTAC-GATAGTAGGAT
1 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGAGTTACAG-CAGCAAGAT
* *
18909115 CAGCAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCGGCTG
65 CAGCAGCACGTAGAGGGAGACCCGACCGATCCCCGACTTGCACATCCCACCCCTCTGGCCGGCTG
18909180 AGCGCCCGCACGCTCGTTTCGTGGGTTGAC
130 AGCGCCCGCACGCTCGTTTCGTGGGTTGAC
*
18909210 TTAGGCATATGGAGTTCATTCCCAATCTAAG
1 TTAGGCATATGGAGTTCATTCCCAGTCTAAG
18909241 CATACGAAGT
Statistics
Matches: 170, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
158 1 0.01
159 169 0.99
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (159 bp):
TTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGAGTTACAGCAGCAAGATC
AGCAGCACGTAGAGGGAGACCCGACCGATCCCCGACTTGCACATCCCACCCCTCTGGCCGGCTGA
GCGCCCGCACGCTCGTTTCGTGGGTTGAC
Found at i:18910157 original size:26 final size:26
Alignment explanation
Indices: 18910121--18910173 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18910111 GTTGACTTAG
*
18910121 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18910147 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18910173 G
1 G
18910174 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18911464 original size:26 final size:26
Alignment explanation
Indices: 18911428--18911480 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18911418 GTTGACTTAG
18911428 GCATACGGAGTTCATTC-CTAGTCTAA
1 GCATACGGAGTTCATTCTC-AGTCTAA
18911454 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
18911480 G
1 G
18911481 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:18913257 original size:26 final size:25
Alignment explanation
Indices: 18913215--18913266 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
18913205 GTTGACTTAG
* *
18913215 GCATACGAGTTCGTTCCTAGTCTAA
1 GCATACGAGTTCATTCCAAGTCTAA
18913240 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATAC-GAGTTCATTCCAAGTCTAA
18913266 G
1 G
18913267 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGAGTTCATTCCAAGTCTAA
Done.