Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 110 of 117
Found at i:19065773 original size:26 final size:26
Alignment explanation
Indices: 19065737--19065787 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
19065727 GTTGACTTAG
19065737 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19065763 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
19065788 TGATCGGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19066465 original size:26 final size:26
Alignment explanation
Indices: 19066429--19066480 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19066419 TTGACGTAGA
*
19066429 CATATGGAGTTCATTCCCAGTATAAG
1 CATACGGAGTTCATTCCCAGTATAAG
*
19066455 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTATAAG
19066481 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTATAAG
Found at i:19067565 original size:25 final size:26
Alignment explanation
Indices: 19067521--19067572 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19067511 GTTGACTTAG
*
19067521 GCATACGAGTTCGTTCCCAA-TCTAA
1 GCATACGAGTTCATTCCCAAGTCTAA
19067546 GCATACGGAGTTCATT-CCAAGTCTAA
1 GCATAC-GAGTTCATTCCCAAGTCTAA
19067572 G
1 G
19067573 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGAGTTCATTCCCAAGTCTAA
Found at i:19068454 original size:26 final size:26
Alignment explanation
Indices: 19068425--19068477 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19068415 GTTGACTTAG
* *
19068425 GCATACGAAGATCATTCCTAGTCTAA
1 GCATACGAAGATCATTCCCAATCTAA
*
19068451 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGATCATTCCCAATCTAA
19068477 G
1 G
19068478 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGATCATTCCCAATCTAA
Found at i:19069117 original size:911 final size:900
Alignment explanation
Indices: 19066454--19074044 Score: 8829
Period size: 911 Copynumber: 8.4 Consensus size: 900
19066444 CCCAGTATAA
* * *
19066454 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CAGA-TCAAGGGTTGTGGCAGCAGTATCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTC-GACT-GAGGGTTGCGGCAGCAGGATCGG
* * * * ** ** * * * * *
19066517 TAGCACGCAAAAGGGGACTCGATCGATCCTTGGCTTACGCATCCCGCCCGTCTTGCCAGTTGAGC
64 CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
19066582 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-TAGAGTTCATTCCCAGTCTAAGTATACG
129 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATACG
** * * **
19066646 GAGTTCATTCCCAGTCTAATTTTGGACCAGACCGAGGGTTGCAACAGCACATGCTGGGCTCGGGC
193 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
19066711 ATGTGCTAGTGTCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTTGGAGAACCT-AG
258 ATGTGCTGGTG-CACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA-
* *
19066775 CCGGCGGCATTGGGGTTCTAACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
321 CCGGCGG-ATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
19066840 TGTTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
385 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
19066905 TAAAGAGTATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
450 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
19066970 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGC
515 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * *
19067035 CAACCAAAATACAAGGATCACGTCTAGCAAGTTTGGCGCCAAAACTCTTTCCGAAAAAATTTAAA
580 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAATTTTAA
* * * *
19067100 AAAATCCCGAATCGTAAAAAGTTTCAAAAATCATAAAAAATAGCAAAACGAGTCGTCTTGCCATG
644 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG-AAAACGAGTCGTCTTGCCATG
* *
19067165 AAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGCA
708 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
19067230 TGCAGAAAT-TGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGAATCC
773 CGCAGAAATAT-GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
** * * *
19067294 TATCTCTCTGGCCGGCGTATTGCCCGCCCGCCTGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCT
837 CGTCTCTCTGGCCGACGTAGTGCCCG--C-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
19067359 TAG
898 TAG
* ** * * * * *
19067362 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCCGACCAAGGGTTACAGTAGCAGGATCAGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTCGACTGAGGGTTGCGGCAGCAGGATCGGC
* * * ** ** * * *
19067426 AGCACGTAGAGAGGGACCTGATCGATCCCCGGCTTATGCATCCCGCCCCTGTAGCCGGCTGAGTG
65 AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
19067491 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACG-AGTTCGTTCCCAATCTAAGCATACGGA
130 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * ** * *
19067555 GTTCATTCCAAGTCTAAGATTGGATCAGACCGAGGGTTACGATAGCAAATGCTGGGCTCGAGCAT
195 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * * *
19067620 GTGCTGG-GGACGTATTTTTCATT-GCCGGGGCACCCTCTTCGGAGCATCATCGGAGAACCTGAC
260 GTGCTGGTGCAC--ATTTTTC-TTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
* * *
19067683 CGGTAGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGCAGTGTGCGCACATGATGTGCGATG
322 CGG-CGGATTGGGGTTCCAGCGATCGGGGGGGCC-GGGGG--GTGTGCGCACATGATGTGCGATG
* *
19067748 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACACCCC
383 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
19067813 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCTGTAGCCGTTAAAGTGTCTGAAATGGGGA
448 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
19067878 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAC
513 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* **
19067943 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCATTCTAAAAAATTTT
578 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAATTTT
* *
19068008 -TAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
642 AAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
19068071 TGAAACTTCACGTGAAAGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGG
706 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
19068136 CACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATC
771 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * *
19068201 CCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCTGCCCACCCACTCGTTTCGTCGGTTGGCTTAG
836 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
19068266 ACATACGGAGTTCATTCCCAGTCTAAGATCGGACTCGACCGAGGGTTGCGGCAGCAGGATAGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTCGACTGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
19068331 GCATGCAGAGGAGGTCCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
66 GCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
19068396 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGATCATTCCTAGTCTAAGCATACGAAG
131 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAG
* * *
19068461 TTCATTCCCAATCTAAGATCGGACCGGACCGAGGGCTGCGGCAGCACATGTTGGGCTCGGGCATG
196 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * *
19068526 TGCTGGTGCACATTTTTCTTTGTCGGGGGCACCATCATCGGCAGCA-CG-CGAAAAACCTGACCG
261 TGCTGGTGCACATTTTTCTTCGTC-GGGGCACCATCGTCGG-AGCATCGTCGGAGAACCTGACCG
* *
19068589 ACAGCGGATTCGGGCGTTCCAAGCGATC-GGGGGGCCGGGGGGTGTGCGCACATTATGTGCCCAT
324 ---GCGGATT-GGG-GTTCC-AGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG-CGAT
*
19068653 GGGTGCTGGTACTTAGCCCTCTATATAGCTGGCCCCCTACTCCCT-ATC-AACCTCGAGAACTCA
382 GGGTGCTGGTACTTGGCCCT-TATAT---TGGCCCCCTA-TCCCTCATCAAACCTCGAGAACTCA
* * * *
19068716 CACCCCCTTAAAGTGCATTTG-GAATTTACAGG-TTGCTGCCAGTAGCCATTAAAGTGTTTAAAA
442 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
19068779 TGGGGACAC-GTTTTCAAAATGGTCACAAAATCCTTGTACATTTCGAG-TTTGAGCTGAATGGTT
507 TGGGGACACTTTTTTC-AAATGGTCACAAAAT-CTTGTACACTTCGAGTTTTTAGCTGAAT-TTT
* * * * *
19068842 TTTGTACATG-CTACAATAAAT-CAAGGATCACGTCCACCCA-TCGTTGGGGCCAAAAAC-CTTT
569 TTTGTGCATGCCAACAA-AAATACAAGGATCACGTCTACCAAGT--TTGGGGCC-AAAACTCCTT
* *
19068903 CCGAAACATTTTAAAAAATCTGCG-ACCGTAAAAAATTTTCCAAAAATCGTGAAAAAATAGAAAA
630 CCGAAAAATTTTAAAAAATCT-CGAACCGT-AAAAAGTTT-CAAAAATCGTG-AAAAATAGAAAA
*
19068967 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGG-CCATTGTATGAATTTAGAAGCC
691 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCC
* *
19069031 ATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACTCACCTACCACCCTATCGAT
755 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
19069096 CCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTTGTGCCCGCCCGCCCGCCCGTCTGCTCGTT
820 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTT
19069161 TCGTCGGTTGGCTTAG
885 TCGTCGGTTGGCTTAG
* * * * * * *
19069177 GCATACAGAGTTCATTCCCAGTGTAAGATCAGACTGGACCGAGGGATGCGACAGCAGGATCGACT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTCGACTGAGGGTTGCGGCAGCAGGATCGGC-
* * * * * *
19069242 A-CATGCAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCA
65 AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
19069306 CCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
130 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGA
19069371 GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
195 GTTCATTCCCAGTCTAAG-AT-CG--G---------A--C------C-G----GACCGAGGGTTG
* * * * *
19069436 TGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGC-CGTATTTTTCTTCGCCAGGGCACCATCG
234 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAC--ATTTTTCTTCGTCGGGGCACCATCG
* * ** * *
19069500 CCCGAGCATCACCAGAGAACCTGACCGACGGATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGG
297 TCGGAGCATCGTCGGAGAACCTGACCGGCGGATTGGGGTTCCAGCGATCGGGGGGGCC-GGGGGG
* * * *
19069565 CGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTAGCTCCCTATCCCTCATC
361 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
19069630 AAACCTTGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCC
426 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
19069695 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTT
491 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
19069760 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAA
556 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * *
19069825 AAACTACTTCCGAAAAAATTTTAAAAAATC-CTAAACTGCAAAAAGTTTCAAAAATCGTGAAAAA
621 AAACTCCTTCCG-AAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
* *
19069889 TAGAAAACGAGACGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA--T-
684 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * *
19069951 -------T-----TGGCATTGTCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCATCCT
749 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
19070004 ATCGATCCACGGCTTGCACATCCCGTCTCTTTGGCCGACGTAGTGCCCGTCCGCCCGCCCACCCG
814 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCG
19070069 CTCGTTTCGTCGGTTGGCTTAG
879 CTCGTTTCGTCGGTTGGCTTAG
* * * * *
19070091 GCATACGGAGTTCATTCCCAGTCTAGAGATCAGA-TTGAGCTGAGGGTTACAGTAGCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTA-AGATCAGACTCGA-CTGAGGGTTGCGGCAGCAGGATCGG
* * * * * * *
19070155 CAGGACACAGAAGGGCACCCGGCCGATCCCCGGATTGCGCATCCCACCCCTCTGGCCGGTTGAGC
64 CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
19070220 GCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATA-TAGAGTTCATTCCCAGTCTAAGCATACG
129 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATACG
* * * * * *
19070284 GAGTTCATTCCCAATGTAAGATCAGATCGGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGC
193 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
19070349 ATGTGCTGGTGCTGCATTTGTCTTCGTCGGGGCACCAT--TACTGGAGCATCGTCGGAAAACCTG
258 ATGTGCTGGTGC-ACATTTTTCTTCGTCGGGGCACCATCGT-C-GGAGCATCGTCGGAGAACCTG
* * * * * * *
19070412 ATCGACGGCATTAGGGTTTCAGTGAT-GGAAGGGGCCGGGGGGTGTGCGCACATGATGTGCCATG
320 ACCGGCGG-ATTGGGGTTCCAGCGATCGG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* * *
19070476 GGTGCTGGTACTTGACCCTTATACTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
383 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
19070541 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAATAGCCATTAAAGTGTCTGAAATGGGGA
448 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
19070605 CACTTTTTTCAAATGGTTATAAAATGTTGTACACTTCGTG-TTTTAGCTGAA-TTTTTTGTGCAT
513 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
19070668 GCCAAAAAAAATACAAGGATCACGTCTACCAAG-TTGGGGCCAAAACTCCTTCCAAAAAAATTTT
578 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAATTTT
** *
19070732 AAAAAATCTCGAACCCCAAAAAGTTTCAAAAAATCGTGAAAAATAGAAAACGAGTCGCCTTGCCA
642 AAAAAATCTCGAACCGTAAAAAGTTTC-AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
19070797 TGAAACTTCACGTGTAGGCTTAAGGGACCATTGTAAGAATTTTCAAGCCA-AAAAATTGGCATTG
706 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGGCATTG
*
19070861 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
770 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
19070926 CACATCTCTTTGGCCGACGTAGTGCCCGTCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTA
835 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
19070991 G
900 G
* * * * * * *** * * *
19070992 GCATACGGAGTTCATTTCGAATCTAAAATCAGACTGGATTGAGGGTTGCAATAGTAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTCGACTGAGGGTTGCGGCAGCAGGATCGGCA
** *
19071057 GCATACAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
66 GCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* ** * * * * *
19071122 CCACACGCTTATTTCGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAGGCTTACGGAG
131 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * *
19071187 TTCATTCCGAGTCTAAGATCGGTCCAGAGCGAAGGTTGCGGCAGCACATGCTGGGCTCGAGCATG
196 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
*
19071252 TGCTGGT-CTTACATTTTTCTTCGTCGGGG---CATC-T-------TTGTCGGAGAA-CTGACCG
261 TGCTGGTGC--ACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
* ** * * *
19071304 GCCGCATTTAGCTTCCGGCGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCCATGGGT
324 G-CGGATTGGGGTTCCAGCGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
19071369 GCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
386 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
19071434 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
451 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
19071499 TTTTTTCAAATGGTCACAAAATCTT-TACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
516 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
19071563 AAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAGTTTT-AA
581 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-TTTTAAA
* *
19071627 AAATCTCGAACCGTAAAAAGTTTCGAAAAAT-GTGAAAAATAAAAAAGGAGTCGTCTTGCCATGA
645 AAATCTCGAACCGTAAAAAGTTTC-AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
19071691 AACTTCACGTCAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
709 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
19071756 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCATGGCTTGTGCATCCCG
774 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
19071821 CCTCTCTGGCCGACGT--TG--TGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
839 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* ** * * * * ** *
19071879 GCGTACGGAGTTCATTCCCAGTCTAAGATTGGACTGGATTGAGTGTTACGATAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTCGACTGAGGGTTGCGGCAGCAGGATCGGCA
* * *** * * * * * *
19071944 GCATGCAGAGTGGGACCTAACCGATCCCTGGCTTGTGCATCTCACACCTCTGGCCGACTGAGCGC
66 GCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
19072009 TCGCACGCTCGTTTCA-----TG-----GGC-T--G-A---C-TT---AG-----GCATACGGAG
131 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * *
19072048 TTCATTCCCAGTCTAAGATCAGACCGGATCGATGGTTACGGTAGCACATGCTGGGCTCGGGCATG
196 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * *
19072113 TGCAGGTGCTGCATTTGTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGG
261 TGCTGGTGC-ACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
* * * *
19072178 TCGCATTGGGGTTCCGGTGATC------G--GGGGGGTGTGCACACATGATGTGCGATGGGTGCT
325 -CGGATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
**
19072235 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTTTTAAA
389 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
19072300 GAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGTCATTAAAGTGTCTAAAATGGGGACACTTT
454 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
19072365 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTGTTTTGTGCATGCCAAC
519 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
** *
19072430 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGTAAAAACTCCTTCCAAAAAAATTTTAAAAAA
584 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAATTTTAAAAAA
* * * *
19072495 TCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACT
648 TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
19072560 TCACGTGCAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
713 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* *
19072625 AAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTT
778 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * **
19072690 TCTGGCCGACGTAGTGCTCG---G-CCGCTCGCCCGCTCGTTTCGTTAGTTGGCTTAG
843 TCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
19072744 GC-TACGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGATTGAGAGTTGTGGCAGCAAGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTC-GACTGAGGGTTGCGGCAGCAGGATCGGC
* * * * * * *
19072807 AGCACGCAGAGGGGGACCCGACCGATCCCTGTCTTACGCATCCCACCCCTCTGGTCGGATGAGCG
65 AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
19072872 CCCGCACGCTTGTTTCATGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGCATACGG
130 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATACGG
* * * * **
19072936 AGTTCATTCCCATTCTAAGATCGGACTGGACCGAGGGTT-CTGACAGCAAATGCTGGGCTCCAGC
194 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GGCAGCACATGCTGGGCTCGGGC
** * * *
19073000 ATGTGCTGGTGTCGTATTTTTTTTC-ACTGGGGCACCATCGTCGGAGCATTGTCGGAGAACCTGA
258 ATGTGCTGGTG-CACATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
** * * * *
19073064 CCGGCGGCATTGGGGTTCTGGCGATCGCGGGGTCGGGGGGGTATGCGCACATGATGTGCGAT-GG
321 CCGGCGG-ATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
19073128 TGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCACATCAAACCTCGAGAACTCAGACCCCCT
385 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
19073192 TAAAAAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
450 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
19073256 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGC
515 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
** **
19073321 CAA-AACAAATACAAGGATCATTTCTACCATTTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
580 CAACAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAATTTTA
* * * * * * * *
19073385 AAAAATCCCGAACCGAAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGGGTCATCTTGCTATG
643 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
19073450 AAACTTCAACGTGAAGG-TTAAGGGACCATTGTATCGAATTTACAAGCCCTAAGAATGGGCATTC
708 AAACTTC-ACGTGAAGGCTTAAGGGACCATTGTAT-GAATTTACAAGCCATAAAAAT-GGCATT-
** * *
19073514 GGCACATAGAAATAT-AAGCTGTGCCT-AAGCCACCTA-CACCCTATCGATCCACGGCTTGCGCA
769 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
19073576 TCCCGGTCCTCTCTGGCCGGCGTAGT-------TG--C-CCCGCCTGCTCGTTTTGTCAGTTGGG
834 TCCC-GT-CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
19073631 TTAG
897 TTAG
* * * ** * ***
19073635 GCATATGGTGTTCATTCCCAGTCT-AGTTTGGA-TCGAATGAGGGGTTGTTACAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTCGACTGA-GGGTTGCGGCAGCAGGATCGGC
* * * * * * * *
19073698 AGCACACAGTGGGGGACTCGGCCAAT-CCCGGCTTGCGTATCCCGCCGCTTTGGCCGACTGAGCG
65 AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * * *
19073762 CCCGCACGCTCATTTCGTGAGGGTTGACTTAGGCAAACGGAGTTCATTCCTAGTCTAAGCATACG
130 CCCGCACGCTCGTTTCAT--GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACG
* *
19073827 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTT-CGGCAGCACATGCTGGGCTCGGGC
193 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * ** * *
19073891 ATGTTGCTAGTGC-CGTATTTTTCTTCACTTGGGGGCACGATCACCGGAGCATTGTCGGAGAACT
258 ATG-TGCTGGTGCAC--ATTTTTCTT--CGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
* * * *
19073955 TGACCGGCGACATTGGGGTTCCGGCGATCAGGGGGGCCGGAGGGGGTGTGCACCACATGATGTGC
318 TGACCGGCG-GATTGGGGTTCCAGCGATCGGGGGGGCC-G-GGGGGTGTGC-GCACATGATGTGC
*
19074020 CATCGTCGGTGCTGGTACTTGGCCC
379 GAT-G--GGTGCTGGTACTTGGCCC
19074045 NNNNNNNNNN
Statistics
Matches: 5785, Mismatches: 672, Indels: 459
0.84 0.10 0.07
Matches are distributed among these distances:
861 89 0.02
862 1 0.00
863 178 0.03
864 216 0.04
865 226 0.04
866 3 0.00
867 3 0.00
869 5 0.00
870 1 0.00
872 10 0.00
873 26 0.00
874 4 0.00
875 1 0.00
876 1 0.00
877 3 0.00
878 1 0.00
881 1 0.00
882 4 0.00
885 51 0.01
886 118 0.02
887 162 0.03
888 88 0.02
889 224 0.04
890 334 0.06
891 318 0.05
892 197 0.03
893 26 0.00
894 64 0.01
895 269 0.05
896 96 0.02
897 76 0.01
898 40 0.01
899 1 0.00
900 220 0.04
901 174 0.03
902 1 0.00
903 2 0.00
904 194 0.03
905 119 0.02
906 41 0.01
907 263 0.05
908 375 0.06
909 94 0.02
910 286 0.05
911 397 0.07
912 8 0.00
913 3 0.00
914 154 0.03
915 154 0.03
919 1 0.00
924 1 0.00
926 1 0.00
927 1 0.00
928 10 0.00
929 69 0.01
930 50 0.01
931 58 0.01
932 117 0.02
933 42 0.01
934 23 0.00
935 6 0.00
936 5 0.00
937 56 0.01
938 23 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTCGACTGAGGGTTGCGGCAGCAGGATCGGCA
GCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
TGCTGGTGCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGC
GGATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTAAAAAATCT
CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:19069366 original size:26 final size:26
Alignment explanation
Indices: 19069336--19069414 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
19069326 GTTGACTTAG
19069336 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19069362 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19069388 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19069414 G
1 G
19069415 ATCAGACCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19071186 original size:26 final size:26
Alignment explanation
Indices: 19071148--19071201 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
19071138 TGGGTTGACT
19071148 TAGGCATAAGGAGTTCATTCCCAGTC
1 TAGGCATAAGGAGTTCATTCCCAGTC
* * *
19071174 TAGGCTTACGGAGTTCATTCCGAGTC
1 TAGGCATAAGGAGTTCATTCCCAGTC
19071200 TA
1 TA
19071202 AGATCGGTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (26 bp):
TAGGCATAAGGAGTTCATTCCCAGTC
Found at i:19072932 original size:26 final size:26
Alignment explanation
Indices: 19072902--19072954 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19072892 GTTGACTTAG
19072902 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
19072928 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19072954 G
1 G
19072955 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19075433 original size:26 final size:26
Alignment explanation
Indices: 19075397--19075449 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19075387 GTTGACTTAG
*
19075397 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19075423 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19075449 G
1 G
19075450 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19077668 original size:707 final size:704
Alignment explanation
Indices: 19075841--19078267 Score: 3300
Period size: 708 Copynumber: 3.4 Consensus size: 704
19075831 GATCACATCT
* **
19075841 TGAATCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
1 TGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
19075906 CGTGAAGGCTTAAGGGACCATTGTATGAATTTTGA-AAGTCC-TAAAAATGGCATTGGCATGCAA
66 CGTGAAGGCTTAAGGGACCATTGTATGAA-TTT-ACAAG-CCATAAAAATGGCATTGGCACGCAG
** *
19075969 AAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCTGTCTC
128 AAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCTGTCTC
* * * * *
19076034 TTTGGCCTG-CGTAGTGCCCGCCCGTCCGCCCACCCGCTTGTTTCGTCAGTCGGCTTAGGCATAC
193 TCTGGCC-GACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATAC
* *** * * *
19076098 AGAGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTCGCAGCAGCAAACGCTGGGCTCGGG
257 AGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGG
* * * * * * * *
19076163 AATGTGCTCGCGTCGCATTTTTCTTCGTCGGGGTACCATTGTCGAAGCATCGTTGGAGAACCTGA
322 CATGTGCTGGTGCCGTATTTTTCTTCGCCGGGG---CA----C-AATCA-C--CGGAGAACCTGA
* * * * *
19076228 TCGACAGTATTAGGGTTCCGACGATCAGGGGGGCCGA-GGGGTATGCGCGCATGATGTGCGATGG
376 CCGACGGAATT-GGGTTCCGACGATCAGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGG
*
19076292 GTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCATGAGTAA-TCACACCCC
440 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TGAG-AACTCACACCCC
*
19076356 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAA
503 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
19076421 CACTTTTTTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAATTTTTTTTGTGCAT
568 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA-TTTTTTTGTGCAT
* * * *
19076486 GCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTCCCGAAAGAATTTT
632 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTA
19076551 AAAAATCTC
697 AAAAATC-C
* * *
19076560 AGAA-CGCAAAAAGTTTCAAAAGATCTGTG-AAATTAAAAAACGGAGTCGTCTTGCCATG--ACT
1 TGAACCGCAAAAAGTTTCAAAA-ATC-GTGAAAAATAGAAAAC-GAGTCGTCTTGCCATGAAACT
* * * **
19076621 T-TCGTGAAGGCTTAAGGGACCATTGTATGAA-TTACAAG-CATTAAAATGGCATTGGTATTCAG
63 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
*
19076683 AAATACTGAAGATATGCCTAAACCCACGACTACCACCCTTTTACGATCCACAGCTTGCGCATCC-
128 AAATA-TGAAGATATGCCTAAACCCAC--CTACCACCC-TAT-CGATCCACAGCTTGCGCATCCT
* **
19076747 GTCTC-CTGGCC-ACGTAGTGGCCCGCCCCGCCCAGCCCGCCGGCTCGTTTCGTCAGTTGTTTTA
188 GTCTCTCTGGCCGACGTAGT-GCCCG-CCCGCCC-GCCCGCCCGCTCGTTTCGTCAGTTGGCTTA
* *
19076810 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAC-GACAGCACATGCTG
250 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAG-CAGCACATGCTG
* *
19076874 GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACTATCACCGGAGAACCTGACCG
314 GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACAATCACCGGAGAACCTGACCG
* * * *
19076939 ACGGCATTGGGGTTCTGACGATC-GGGGGGCCCAGGGGGTGTGCGCACATTATGTGCGATGGGTG
379 ACGGAATT-GGGTTCCGACGATCAGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
19077003 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACACACACCCCCTTA
443 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAGAACTCACACCCCCTTA
* * * * *
19077068 ACGAGCATTTGAGATTTGATAGGTTTGCTGCCAGTCGCCATTAAAGTATCTGAAATGGGGACACT
507 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
19077133 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGATTTTTTTGTGCATACCAA
572 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTGTGCATGCCAA
*
19077198 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTGAAAAA
637 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT-AAAAA
19077263 ATCC
701 ATCC
** *
19077267 TGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
1 TGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * *
19077332 CGTGAAGGCCTAAGGGACCATTTTATGAATTCTGA-AAGCCCTAAAAATGGCATTGGCACACAGA
66 CGTGAAGGCTTAAGGGACCATTGTATGAATT-T-ACAAGCCATAAAAATGGCATTGGCACGCAGA
19077396 AATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCTGTCTCT
129 AATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCTGTCTCT
* * * * * *
19077461 CTGGCCGGCGTAGTACTCGCCCGCCCGTCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAG
194 CTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAG
** * *
19077526 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCACATGCTGGGCTCGAGCA
259 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCA
* *
19077591 TGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACAATCCCCGGAGAACCTGACCGACGGAATTGG
324 TGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACAATCACCGGAGAACCTGACCGACGGAATTGG
* * *
19077656 TGTTCCGACGATCAGAGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
389 -GTTCCGACGATCAGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
19077721 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCATTAAAGAGCATTT
453 GCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TGAGAACTCACACCCCCTTAAAGAGCATTT
*
19077786 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAATT
517 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
19077851 GGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTGTTTTATGCATGCCAACAAAAATAC
582 GGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG-ATTTTTTTGTGCATGCCAACAAAAATAC
* *
19077916 AAGTATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-C
646 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTAAAAAATCC
19077975 TCGAACCGCAAAAAGTTTCAAAAAT-GATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
1 T-GAACCGCAAAAAGTTTCAAAAATCG-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * * *
19078039 CACATAAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATCGCATTGGCACGTAGA
64 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* * * * *
19078104 AATATGAAGATGTACCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
129 AATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCTGTCTCT
19078169 CTGGCCGACGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAG
194 CTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAG
*
19078230 AGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGT
259 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
19078268 AGTAGTAGCA
Statistics
Matches: 1521, Mismatches: 147, Indels: 95
0.86 0.08 0.05
Matches are distributed among these distances:
704 81 0.05
706 21 0.01
707 282 0.19
708 561 0.37
709 207 0.14
710 11 0.01
711 28 0.02
712 26 0.02
713 1 0.00
714 24 0.02
715 26 0.02
716 8 0.01
717 48 0.03
718 33 0.02
719 145 0.10
720 19 0.01
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (704 bp):
TGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
TATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCTGTCTCTCT
GGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAG
TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATG
TGCTGGTGCCGTATTTTTCTTCGCCGGGGCACAATCACCGGAGAACCTGACCGACGGAATTGGGT
TCCGACGATCAGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
ACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTGTGCATGCCAACAAAAATACAAGGA
TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAATCC
Found at i:19078433 original size:26 final size:26
Alignment explanation
Indices: 19078381--19078433 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19078371 GTTGACTTAG
* * * *
19078381 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCACTCCCAATCTAA
19078407 GCATACGGAGTTCACTCCCAATCTAA
1 GCATACGGAGTTCACTCCCAATCTAA
19078433 G
1 G
19078434 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAATCTAA
Found at i:19080734 original size:899 final size:898
Alignment explanation
Indices: 19077518--19089385 Score: 14759
Period size: 894 Copynumber: 13.4 Consensus size: 898
19077508 GTTGGCTTAG
* * * * * *
19077518 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19077583 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCG-CCAGGGCA-CA--ATC----C--C--CGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGA-GGCACCATCGTCGGAGCATCGTCGGAG
* * * *
19077636 AACCTGACCGACGG-AATTGGTGTTCCGACGATCAGAGGGGTCGGGGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTTGG-GTTCCGACGATC-GAGGGGGCCGGGGGGTGTGCGCACATGATG
19077700 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-TGAGAACT
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCT-AGAACT
*
19077764 CACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
19077829 AATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTGTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTT
* * *
19077894 TTATGCATGCCAACAAAAATACAAGTATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
*
19077959 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT-GATGAAAAATAGAAAACGAGTCG
452 AAAATTTTAAAAAATCCCGAACCGC-AAAAGTTTCAAAAATAG-TGAAAAATAGAAAACGAGTCG
* * *
19078023 TCTTGCCATGAAACTTCACATAAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
19078088 CGCATTGGCACGTAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTATCGATCCACGGCT
580 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
*
19078153 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGC
645 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
19078218 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTAGTAGTAGCAGGATC
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATC
* *
19078283 GACAGCATGCAGAGGGGGACCCGGACGATCTCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
775 GACAGCACGCAGAGGGGGACCCGGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
19078348 GCGCCCGAACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTGTAA
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
* * *
19078407 GCATACGGAGTTCACTCCCAATCTAAGATCGGACCAGGACTGAGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACC-GGACCGAGGGTTGCGGCAGCACATGCTGG
* *
19078472 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAG
* * * *
19078537 AACCTGACTGGCGGCATTTGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGGGCACATGATGTG
130 AACCTGACCGGCGGCATTTGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
19078602 CAATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCTTATCCCTCATCAAACCTCTAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCAC
* * *
19078667 ACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
19078732 GGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTGTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTG
* * *
19078797 TGCATGCCAACAAATATACAAGTATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
19078862 ATTTTAAACAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGCCTTCTT
455 ATTTTAAAAAATCCCGAACCGC-AAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTT
19078927 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
19078992 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCAATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
19079057 CATCTCGTCTCTCTGGCCGACGTAAT----GCCCACCCGCTCGTTCGTTTCGTCGGTTGGCTTAG
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * **
19079118 GCATACGGAGTTCATTCCCAGTCTAAGAT-GGAACCAGATTGAGGGTTGTGGCAGCAGGATCGGT
714 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGTGGTAGCAGGATCGAC
* * * * *
19079182 AGCATGCAGAGGGGGACCC-GACCGATCTCCGACTTGCGCATCCCGCCACTCTGGCCGACTGAGC
778 AGCACGCAGAGGGGGACCCGGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * ** *
19079246 GCCCGTACGCTCATTTTATGGGTTGATTTAGGCATACGGAGTTCATTCCCAGTGTAA
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
* * * * * * * *
19079303 GCATGCGAAGTTCATTCCCAGTCTAAAATCGGACAGGACTGAGGGTTGTGGCAGCACATGCTGGT
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19079368 CTCGGGCATGTGCTAGTGCCGCATTTTTCTTCATTGAGGCACCATCGTCGGAGCATCG-CCGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * *
19079432 ACCTGACCGGCGGCATTCGAGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATAATATG
131 ACCTGACCGGCGGCATTTGGGTTCCGACGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * * * *
19079497 CGATGGGTGCTAGTACTTGGCCCTTATATTTG-CCCCTATCCCTCATCAGACTTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCAC
* * *
19079561 ACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTATGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
19079626 GGGGACACTTATTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTG
* **
19079691 TGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
19079756 ATTTTAAAAAATCTCGAACAGCAAAAAGTTTCAAAAAT-GATGAAAAATAGAAAACGAGTCGTCT
455 ATTTTAAAAAATCCCGAACCGC-AAAAGTTTCAAAAATAG-TGAAAAATAGAAAACGAGTCGTCT
* * * *
19079820 TGCCATGAAACTTCACATAAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATCGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
19079885 ATTGGCACGCAGAAATCTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
19079950 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * *
19080015 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTAGTAGTAGCAGGATCGAC
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGAC
* *
19080080 AGCATGCAGAGGGGGACCCGGACGATCTCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
778 AGCACGCAGAGGGGGACCCGGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
19080145 CCCGAACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTGTAA
843 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
* * * *
19080201 ACATACGGAGTTCACTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
19080266 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCAGCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
19080331 ACCTGACTGGCGGTATTTGGGTTCCGAGGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTTGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
19080396 AATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCTTATCCCTCATCAAACCTCTAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACA
* * *
19080461 CCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
19080526 GGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTGTTTTAT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGT
* * *
19080591 GCATGCCAACAAATATACAAGTATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
19080656 TTTTAAAAAATCCCAAACCGCAAAAGCTTTCAAAAATAGTGAAAAATAGAAAACGAATCGTCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAG-TTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTG
*
19080721 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
19080786 TGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
19080851 ATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGG
650 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * *
19080916 CATACGGGGTTCATTCCCATTCTAAGATCAGACC-GAACTGAGGGTTGTAGTAGCAGGATCGACG
715 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGTGGTAGCAGGATCGACA
* ** * * *
19080980 GCATGCAGAGGGGGACCCAAAGGATCTCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGC
779 GCACGCAGAGGGGGACCCGGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
19081045 TCGAACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTGTAA
844 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
* * * *
19081100 ACATACGGAGTTCACTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
19081165 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCAGCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
19081230 ACCTGACTGGCGGTATTTGGGTTCCGAGGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTTGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
19081295 AATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCTTATCCCTCATCAAACCTCTAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACA
* * *
19081360 CCCGCTTAAAGAGCATTTGA-ATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
19081424 GGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTGTTTTAT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGT
* * * *
19081489 GCAGGCCAACAAAAATACAAGTATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * * *
19081554 TTTTAAACAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGCCTTCTTG
456 TTTTAAAAAATCCCGAACCGC-AAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTG
*
19081619 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
19081684 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCAATCCACGGCTTGCGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* ** ** *
19081749 ATCTCGTCTCTCTGGCCGACGTAGT----GCCCGCCTACCCATTCGTTTCATCGGTTGGCTTAGG
650 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * *
19081810 CATACAGAGTTCATTCCCAGTCTAAGAT-GGAACCAGATTGAGGGTTGTGGCAGCAAGATTGGCA
715 CATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGTGGTAGCAGGATCGACA
* * * *
19081874 GCATGCAGAGGGGGACCC-GACCGATCTCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCG
779 GCACGCAGAGGGGGACCCGGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* **
19081938 CCCGCACGCTCATTTTATGGGTTGA-TTGAGGCATACGGAGTTCATTCCCAGTGTAA
843 CCCGCACGCTCGTTTCGTGGGTTGACTT-AGGCATACGGAGTTCATTCCCAGTGTAA
* * * * * * * *
19081994 GCATGCGGAGTTCATTCCCAATCTAAAATCGGACAGGACTGAGGGTTGTGACAACACATGCTGGT
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
19082059 CTCGGGCATCTGCTGGTGCCGTATTTTTCTTCATTGAGGCACCATCATCAGAGCATCG-CCGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
19082123 ACCTGACCGGCGGCATTCGAGTTCCGACGATC-AGGGGGGCCGGGGGGGTGTTCGCACATGATGT
131 ACCTGACCGGCGGCATTTGGGTTCCGACGATCGA-GGGGGCC-GGGGGGTGTGCGCACATGATGT
* * * * *
19082187 GTGATGGGTGCTAGTACTTGGCCCTTATATTTG-CCCCTATCCCTCATCAGACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCA
* * *
19082251 CACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTATGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19082316 TGGGGACACTTATTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTGTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTT
* * *
19082381 GTGCATGCCAACAAAAATACAAGTATCACATCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
19082446 AATTTTAAAAAATCCCAAACCGCAAAAGCTTTCAAAAATAGTGAAAAATAGAAAACGAATCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAG-TTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCT
*
19082511 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
19082576 ATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
19082641 ACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGTCCGCCCGCTCGTTTCGTTGGTTGG
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCG----CCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* ** * * * *** * *
19082706 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGATCGGAGTGAGGGTTACAGCAGTAGGAT
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGAT
* * * * * **
19082771 CGACAGCACGTAGAGGGGGA-CC-GACCCTATCCTCGACTTGCGCATCCTGCCCCTCTGGCCTAC
774 CGACAGCACGCAGAGGGGGACCCGGA--CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
19082834 TGAGCGCCTGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
837 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
* * * * * * *
19082896 GAATACGAAGTTTATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
19082961 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGA
*
19083026 ACCTGACCGGCGGCATTTTGGTTCCGACGATCG-GGGGGCCGGGGGGGTGAGTGCGCACATGATG
131 ACCTGACCGGCGGCATTTGGGTTCCGACGATCGAGGGGGCC-GGGGGGT--GTGCGCACATGATG
** ** *
19083090 TTTGATGGGTGCTGGTACTTGGCTGTTATTTTGGCCCCCTATCCCTCATCAAACCT-TGAGAACT
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCT-AGAACT
* *
19083154 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAAAGTGTCTAA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
19083219 AATTGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTT
* * * *
19083284 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCTAGTTTTGGGTCAAAACTCCTTCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * ** *
19083349 AGAATTTTAAAAAATCTCGAACAGCAAAAATTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGC-AAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGT
*
19083414 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* ** * * * *
19083479 GCATTGCCACATAGAAATAGGAAGATGTGCCTAAACCAACGTACCACCCTACCGATCCACGGCTT
581 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
19083544 GCGCATCTCGTC-CTCTGGCCGACGTAGTGCCCCCCCGCCCGTCCGCCCGCCCGTTCGTTTCGTC
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTG----CCCG--C--CCGCCCGCCCGCTCGTTTCGTC
* * ** * **
19083608 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCATACTGGACCGAGGGTTGCAGTAG
703 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAG
* * * *
19083673 CAGGATCTG-TAGCACGCAGAGGGGGACCCGGCCGATCCCCAGCTTACGCATCCCGCCCCTCTGG
768 CAGGATC-GACAGCACGCAGAGGGGGACCCGGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
** * * * *
19083737 CCAACTAAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCT
832 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGT
19083802 AA
897 AA
* * * ** * * *
19083804 GCATACGGAGCTCATTCCTAGTCTAAGATCGGATTGGACCAAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
19083869 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-G-G-A-------A-A
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
19083923 ACCTGACCGACGGCATTGGGGTTCC-A-G--CGA-----TCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTTGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* ** * * * *
19083979 GATGGGTGCTGGTACTTGGCCCTTGTATTTACCCCTTATCCCTTATCAAACCTCGAGAACTCACG
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACA
*
19084044 CCCCCTTAAAGAGCATTTGAGATTTTACCA-GTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
261 CCCCCTTAAAGAGCATTTGAGATTTTA-CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
19084108 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTTGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTG
* * * * **
19084173 TGCATGCCAA-ATAAATTGCAAGGATCACGTCTACCAGGTTT-GGGCAAAAACTCCTTTTGAAAA
390 TGCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
19084236 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTC
454 AATTTTAAAAAATCCCGAACCGC-AAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCGTC
* *
19084300 TTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19084365 CATTGGCACGTAGAAATACGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * * * *
19084430 CGCATCTTGTCTC-CTGGCTGGCATAGT----GCCCGCCCGCACGCTCGTTTCGTCGGTCGGCTT
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * *
19084490 AGGGATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACTGAGGGTTGTGGTACCAGGTTCGG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGA
* * * * ** * *
19084555 TAGCACGCAGAGGGGGACCCGGTCAATCCCCGGCTTGCACATCCCATCCCTCTTGCCGGTTGAGC
777 CAGCACGCAGAGGGGGACCCGGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
19084620 GCCCGCACGCTCGTTTCGTGGGTTG----A--CATA--G-G--------CA---T--
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
* * *
19084655 -C---CGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * **
19084716 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTTCATCGGGGCACCATCCCCGGAGCATCATTAGAG
66 CTCGGGCATGTGCTGGTGCCGCA-TTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAG
* * * * *
19084781 AACCTGACCGACGGCGTTCGGGTTCCGACGATCGGGGGGGCCGGAGGGGTGTGCGCACACGATGT
130 AACCTGACCGGCGGCATTTGGGTTCCGACGATCGAGGGGGCCGG-GGGGTGTGCGCACATGATGT
*
19084846 GCGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCT-TGAGAACTC
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCT-AGAACTC
* * * **
19084910 CCACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGTCGCTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
19084975 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTT
* * *
19085040 TGTACATGCCACCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCC-AAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** ** * *
19085104 ATAATTTTAAAAAATCCTGAACCTTAAAAAGTTTTGAAAATCA-TGAAAAATAAAAAAGGAGTCG
453 A-AATTTTAAAAAATCCCGAACC-GCAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCG
* * * *
19085168 TCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACAATTGTATGAATGTACAAGCAATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
19085233 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCT
580 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
19085298 TGCACATCCGGTTTCTCTGGCTGACGTAGT--------GCCCACCCGCTCGTTTCATCGGTTGGC
645 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
** * * * * * * *
19085355 TTAGGTGTACGGAGTTTATTGCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAACAGGAT-
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATC
* * * * * * *
19085419 TAGCAACACACAGAAGAGGACCC-GACCGATCCCCCGCTTGCGCATCCCGCCCCTCTGGCCGGTT
775 GA-CAGCACGCAGAGGGGGACCCGGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
19085483 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT-CGGAGTTCATTCCCAGTCTAA
838 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
* * * * * *
19085543 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19085608 CTCGGGCATGTGCCGATGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * *
19085673 ACTTGACCTGTGACATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGATGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTTGGGTTCCGACGATCGAGGGGGCCGGGGGG-TGTGCGCACATGATGTG
* * * *
19085738 CGATGGGTGCTGGTACTTGGCCCTTTTACTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCAC
* *
19085803 ACCCCCTTAAAGAGCATTTGAG-TTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTTTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
19085867 AGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTG
*
19085932 TGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
19085997 ATTTTAAAAAAT-CTGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCT
455 ATTTTAAAAAATCCCGAACCG-CAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCGTCT
* * * * *
19086060 TGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTATATAAATTCACAAGCCATAAAAATGGT
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
19086125 ATTGGCGCACAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
19086190 GCTTCCCGTCTCTCTGGTCGACGTAGT--------GCCCGCCCGCTCGTTTCATCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * ** * * * *
19086247 GGCATACAGAGTTGATT-CCAATCTAAAAT-AGGACTGGATTGAGGGTTGCGGCAGCAGGAT-TA
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACTGAGGGTTGTGGTAGCAGGATCGA
* * * * * **** * * * * * **
19086309 GCAGCACGCAG-GTAGTG-CTCGCACGCT-CATTTCGTG-G-GT--TG--ACT-TAG--GAAT-A
777 -CAGCACGCAGAG-GGGGACCCGGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *** * *
19086361 -CG---G-A-GTTC-ATTC-CCAG-T--C-TAAGCATATGGAGTTCATTCCCA--GT--
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
* * *
19086404 -C-TA---AG---------A-TC-GA-ATCGGACC--A---AGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * ** * *
19086447 CTTTGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGA
* ** * *
19086512 ACCTGACCGGCGGTA-TTGGGATT-TTAGTGATC-AGGGGGCCGGGGGGTGTGCTCACATGATGT
131 ACCTGACCGGCGGCATTTGGG-TTCCGA-CGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGT
*
19086574 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCT-TGAGAACTC
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCT-AGAACTC
*
19086638 ACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
** *
19086703 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACTGTTCGAGTTTTTAGCTGAATTGTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTT
* *
19086768 TGGGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
19086833 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATGGTGAAAAATAGAAAACGAGTTGTC
453 AAATTTTAAAAAATCCCGAACCG-CAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTC
* *
19086898 TTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
19086963 CATTGGCACTCAAAAATATAAAGATTTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
19087028 TGCATCTCGTCTTTCTGGCCGGCGTAATGCCCGCCCGTCCGTCCGCTCGTTTCGTCGGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * *
19087093 AGGCATACGGAGTTTGATTCCCAATCTAAGATCAGATCAGACTGAGGGTTGTGGTAGTC-GGATC
712 AGGCATACGGAG-TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAG-CAGGATC
** * * * * * * *
19087157 GGTAGCACGTAGAGGGGGACCCGGTCGATCCCCAGCTTGCACATCCCACCCCTCCGGTCGGCTGA
775 GACAGCACGCAGAGGGGGACCCGGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
19087222 GCGCCCGCACGCTTGTTCCAT-GG-TGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
* * * * *
19087279 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** *
19087344 CTCAAGCATGTG-TGAGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGA
66 CTCGGGCATGTGCT--GGTGCCGCATTTTTCTTCGTCGAGG------CA-C----CATCGTCGGA
* * *
19087408 GCATCATCGGAGAACCTTACCGGCGGCATTTGGGCTT-CGACGATCG-GGGGGCC-GGGGGTGTA
118 GCATCGTCGGAGAACCTGACCGGCGGCATTTGGG-TTCCGACGATCGAGGGGGCCGGGGGGTGTG
* *
19087470 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTTATCAAAC
182 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
19087535 CTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
247 CTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
19087600 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
312 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
*
19087665 CTGAAGT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
377 CTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * *
19087729 TCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAATAATAGAA
442 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG-CAAAAGTTTCAAAAATAGTGAAAAATAGAA
* *
19087794 AACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGC
506 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * *
19087859 CATAAAAATGGCAGTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGA
571 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * *
19087924 TCCACGGCTTGCCCATCCCGTCTCTCCGGCCGACGTAGTGCCCGCCCGTCCACCCACCCGCTCGT
636 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG----CCCGCCCGCTCGT
* * * *
19087989 TTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCCAAGATCAGACCAGACCGAGGGTTG
697 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
* * * *
19088054 TGGTAGCAAGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCACCCC
762 TGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGACGATCCCCGGCTTGCGCATCCCGCCCC
** *
19088119 TCTGGTAGGCTGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCC
827 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
19088184 A--GT--
892 AGTGTAA
* * * *
19088187 -C-TA---AG----------ATC--GGATC--A---GACCGAGGGTTGCAGTAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * **
19088230 CTCGAGCATGTGCTGGTGCCATATTTTTCTTCG-CTGGGGCACCATCGTCGGAGCAGCCCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GAGGCACCATCGTCGGAGCATCGTCGGAG
* *
19088294 AACCTGACCGGCGGCA-TTGAGGTTCCGATGATC------G--GGGGGGTGTGTGCACATGATGT
130 AACCTGACCGGCGGCATTTG-GGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * *
19088350 GCAATGGGTGCTGGTACTTGGCCCTAATATTGGCCCCCTATCCCTCATAAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCA
* * *
19088415 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* ** *
19088480 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCAAAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTT
* * *
19088545 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACACCTTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
19088610 AATTTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAGAAATAGAAAATGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGC-AAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCT
*
19088675 TGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
19088740 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCACGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * * *
19088805 GCATCCCGTCTCTCTGGCC-AGCGTAGTGCCTGCTTGCCCGCATGCCCGTTCATTTCATCGGTTG
648 GCATCCCGTCTCTCTGGCCGA-CGTAGTGCC--C--GCCCGCCCGCCCGCTCGTTTCGTCGGTTG
** ** ** * * * *
19088869 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCAAGGGTTGCGGTGGTAGGG
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGA
* * * *
19088934 TC-AGTAGCACGCAGAGGGGGACCC-GATCGATCCCCGGCTCGCGTATCCCGCCCCTCTGGCCGA
773 TCGA-CAGCACGCAGAGGGGGACCCGGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * * *
19088997 CTGAGCACCGGCACGCACATTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
* * * * *
19089060 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
19089125 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTTG-CCAGGGCACCATCGCCGAAGCTTCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGA-GGCACCATCGTCGGAGCATCGTCGGAG
* * **
19089189 AACCTGATCGGCGGCATTGGGGTT-CGGTGATCG-GGGGGCCGGAGGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTTGGGTTCCGACGATCGAGGGGGCC-G-GGGGGTGTGCGCACATGATG
* * *
19089252 TGCGATGGGTGCTAGTACTTGGCCCTTATATT-GCGCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTC
*
19089316 ACA-CCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
19089380 ATGGGG
323 ATGGGG
19089386 GCCGATCCCC
Statistics
Matches: 9621, Mismatches: 1076, Indels: 552
0.86 0.10 0.05
Matches are distributed among these distances:
837 96 0.01
838 193 0.02
839 277 0.03
842 1 0.00
844 7 0.00
845 1 0.00
846 2 0.00
847 113 0.01
848 28 0.00
849 43 0.00
850 11 0.00
851 5 0.00
853 2 0.00
856 4 0.00
857 2 0.00
858 2 0.00
859 26 0.00
860 4 0.00
861 2 0.00
862 2 0.00
863 3 0.00
864 7 0.00
865 17 0.00
866 2 0.00
867 159 0.02
868 207 0.02
869 684 0.07
870 202 0.02
871 37 0.00
872 2 0.00
873 169 0.02
874 45 0.00
875 6 0.00
876 2 0.00
877 5 0.00
878 3 0.00
879 4 0.00
880 4 0.00
882 1 0.00
883 2 0.00
884 2 0.00
885 238 0.02
886 264 0.03
887 8 0.00
888 56 0.01
889 259 0.03
890 236 0.02
891 178 0.02
892 83 0.01
893 103 0.01
894 1158 0.12
895 231 0.02
896 226 0.02
897 57 0.01
898 745 0.08
899 946 0.10
900 482 0.05
901 97 0.01
902 326 0.03
903 88 0.01
904 60 0.01
905 385 0.04
906 9 0.00
907 277 0.03
908 484 0.05
909 49 0.01
910 128 0.01
911 36 0.00
912 28 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTTGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGACAGC
ACGCAGAGGGGGACCCGGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
Found at i:19082912 original size:26 final size:26
Alignment explanation
Indices: 19082872--19082923 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19082862 TGACTTAGGC
* *
19082872 ATACGGAGTTCATTCCTAGTCTAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
*
19082898 ATACGAAGTTTATTCCCAGTCTAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
19082924 TCGGATCAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGA
Found at i:19083818 original size:26 final size:26
Alignment explanation
Indices: 19083778--19083830 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19083768 GTTGACTTAG
* *
19083778 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
19083804 GCATACGGAGCTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
19083830 G
1 G
19083831 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:19085553 original size:26 final size:25
Alignment explanation
Indices: 19085518--19085569 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
19085508 GTTGACTTAG
19085518 GCATCGGAGTTCATTCCCAGTCTAA
1 GCATCGGAGTTCATTCCCAGTCTAA
19085543 GCATACGGAGTTCATTCCCAGTCTAA
1 GCAT-CGGAGTTCATTCCCAGTCTAA
19085569 G
1 G
19085570 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 4 0.15
26 22 0.85
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATCGGAGTTCATTCCCAGTCTAA
Found at i:19087282 original size:26 final size:26
Alignment explanation
Indices: 19087253--19087305 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19087243 GGTGACTTAG
*
19087253 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19087279 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19087305 G
1 G
19087306 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19089070 original size:26 final size:26
Alignment explanation
Indices: 19089034--19089086 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19089024 GTTGACTTAG
19089034 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19089060 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19089086 G
1 G
19089087 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19091214 original size:26 final size:26
Alignment explanation
Indices: 19091184--19091236 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19091174 GTGGACTTAC
19091184 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19091210 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19091236 G
1 G
19091237 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19092824 original size:26 final size:26
Alignment explanation
Indices: 19092788--19092839 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19092778 GTTGACTTAG
*
19092788 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
19092814 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
19092840 TATTGGACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:19093709 original size:26 final size:26
Alignment explanation
Indices: 19093673--19093725 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19093663 GTTGATTTAG
*
19093673 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19093699 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19093725 G
1 G
19093726 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19094334 original size:896 final size:893
Alignment explanation
Indices: 19091925--19094466 Score: 3540
Period size: 885 Copynumber: 2.8 Consensus size: 893
19091915 TAGGCATATA
* * * * * * *
19091925 GAGTTCATACCCAGTCTAAGATCAGACCGGACTAAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGAGACAGCACATGCT-GGCTCGGGC
* *
19091990 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGGC
65 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT-ATCGGAGCATC-CCGGAGAACCTGAC
* * * *
19092055 CAGCGGCATT-GGGTTCCGGCGATCGGGGGGCCCAGGGGGGTGTGCGCACATGATGTACGATGGG
128 CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGG
* * * * *
19092119 TGCT-GCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCCAACGTTGAGAACTCACACCCCC
193 TGCTAG-TACTTAGCCCTTATATTGGCCACCTATCCCTCATCAAACCTTGAGAACTCACACACCC
* *
19092183 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAATAGCCAGTAAAGTGTCTGAAATGGGGAC
257 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
19092248 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTTGTGCAT
322 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTTGTGCAT
* * *
19092313 GCCAACAAAATATACAATGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTT
387 GCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
* ** * * *
19092378 TAAAAAAT-CTCGAA-CATAAAAAAGTTTTGACAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
451 TAAAAAATCCT-GAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAA-TAGTCGTCTTGC
19092441 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
513 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
19092506 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCA
578 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
** * * *
19092571 TCTGGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCC-GCTCGTTTCATCAGTTGGCTTAGGGATA
643 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTGCTCGTTTCATCGGTTGGCTTAGGAATA
* * ** * * * * *
19092635 CAGAGTTCATTCCCAATCTAAGATCAGACCAGA-TCGAGTGTTGCGGCAGCAGGATCGATAGCAC
708 CGGAGTTCATTCCCAGTCTAAGATCAGACTGGACT-AAGGGTTGCGACAGCAAGATCGACAGCAC
* * * **
19092699 ACAGAGTGGACCCAGTCGATCCCCGGCTTACGCATCCCGACCCTCTAGTTGGCTGAGTGCCAACA
772 ACAGAGGGGACCCAGCCAATCCCCGGCTTACGCATCCCGACCCTCTAGCCGGCTGAGTGCCAACA
19092764 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
837 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * *
19092821 GAGTTCATTCACAGTCTAATATTGGACCAGACCGAGGGTTGAGATAGCACATGCTAGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGAGACAGCACATGCT-GGCTCGGGC
* * * *
19092886 ATGTGCTAGTGCCGCATATTTCTTCGTCGGGGCACC--ATC---G----CCGGAGAACCTGATCG
65 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATATCGGAGCATCCCGGAGAACCTGACCG
* * * * * * * *
19092942 GCGGCATTGGGGTTTCGACCATCGAGGGCGCCGGGGGGGGTGTGCGCTCATGATATGTGATGGGT
130 GCGGCATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGGTGTGCGCACATGATGTGCGATGGGT
* ** *
19093007 GCTAGTACTTTGCCCTTATATTGGCTTCCTATCCCTCATCAAACCTTGAGAACTCACACGCCCTT
194 GCTAGTACTTAGCCCTTATATTGGCCACCTATCCCTCATCAAACCTTGAGAACTCACACACCCTT
** *
19093072 AAAGAGCATTTGAGATTTTACAGGTTTGCTTTTAGTAGCCATTAAAGTGTCTGAAATGAGGACAC
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
19093137 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA-TTTTCTTTGTGCATGC
324 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTTGTGCATGC
*
19093201 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
* * * * *
19093266 AAAATCCCGAACCGTAAAAAGTTTCCAAAATCATGAAAAATAAAAAACTAGTCATCTTGCCATCA
454 AAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA-TAGTCGTCTTGCCATGA
* ** *
19093331 AACTTCACGTGGAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATATCATTGGCAT
518 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
19093396 GCAGAAATATGAAGTTGTGCCTAAACCCGCCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
583 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
*
19093461 TCTCTCTGGCCGACGTTGTGCCCGCCCG-CCTGCTCGTTTCATCGGTTGGCTTAGGAATACGGAG
648 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTGCTCGTTTCATCGGTTGGCTTAGGAATACGGAG
* *
19093525 TTCATTCCCAGTTTAAG-TCAGACTGGACTAAGGGTTGCGACAGCAAGATC-AGCAGCACGCAGA
713 TTCATTCCCAGTCTAAGATCAGACTGGACTAAGGGTTGCGACAGCAAGATCGA-CAGCACACAGA
** * * * * *
19093588 GGGGGACCTGGCCAATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCACACGTT
777 -GGGGACCCAGCCAATCCCCGGCTTACGCATCCCGACCCTCTAGCCGGCTGAGTGCCAACACGCT
* *
19093653 CGTTTCGTGGGTTGATTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACG
841 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* *
19093706 GAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGTGACAGCACATGCTGGCCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGAGACAGCACATGCTGG-CTCGGGC
* * *
19093771 ATGTGTTGGTGCCATATTTTTCTTCATCGGGGCACCATTATCGGAGCATCACCGGAGAACCTGAC
65 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA-TATCGGAGCATC-CCGGAGAACCTGAC
* **
19093836 CGGCGGTATTGGGGTTCCGACGATCGGGGGGGCC-GGAGGGAAGTGCGCACATGATGTGCGATGG
128 CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGG-GGGGTGTGCGCACATGATGTGCGATGG
* * *
19093900 GTGCTAGTACTTAGCCATTATATTGGCCACCTATCACTCATCAAACCTCGAGAACTCACACACCC
192 GTGCTAGTACTTAGCCCTTATATTGGCCACCTATCCCTCATCAAACCTTGAGAACTCACACACCC
* *
19093965 TTAAAGAGCATTTGAGATATTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
257 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
19094030 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGATTTTTTTTTGTGCAT
322 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTTGTGCAT
19094095 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
387 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
19094160 AAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATAAGTCGTCTTGCCAT
452 AAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAT-AGTCGTCTTGCCAT
*
19094225 GAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
516 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * ** *
19094290 ACGTAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCTGCAGCTTGCGCATCC
581 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
** * * * *
19094355 CGTCTCTCTGGTTGACGTAGTGCCCGCCCGATCGCCCTCCCGCTTGTATCGTCGGTAGGCTTAGG
646 CGTCTCTCTGGCCGACGTAGTGCCCG-CC---CGCCCT---GCTCGTTTCATCGGTTGGCTTAGG
* * * *
19094420 CATACGAAGTTCATTCCCAGTCTAAGATCAGAGTGGACCAAGGGTTG
704 AATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTAAGGGTTG
19094467 TAGTAGCACA
Statistics
Matches: 1448, Mismatches: 165, Indels: 57
0.87 0.10 0.03
Matches are distributed among these distances:
883 1 0.00
884 38 0.03
885 505 0.35
886 43 0.03
887 191 0.13
888 4 0.00
890 1 0.00
891 1 0.00
893 2 0.00
894 2 0.00
895 189 0.13
896 403 0.28
897 2 0.00
900 2 0.00
901 3 0.00
904 43 0.03
905 18 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (893 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGAGACAGCACATGCTGGCTCGGGCA
TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATATCGGAGCATCCCGGAGAACCTGACCGG
CGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TAGTACTTAGCCCTTATATTGGCCACCTATCCCTCATCAAACCTTGAGAACTCACACACCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
AATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGACGTAGTGCCCGCCCGCCCTGCTCGTTTCATCGGTTGGCTTAGGAATACGGAGTTC
ATTCCCAGTCTAAGATCAGACTGGACTAAGGGTTGCGACAGCAAGATCGACAGCACACAGAGGGG
ACCCAGCCAATCCCCGGCTTACGCATCCCGACCCTCTAGCCGGCTGAGTGCCAACACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
Found at i:19095094 original size:718 final size:719
Alignment explanation
Indices: 19093699--19095171 Score: 2190
Period size: 718 Copynumber: 2.0 Consensus size: 719
19093689 CCCAGTCTAA
* *
19093699 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGTGACAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGTGACAGCACATACTGGC
* * * *
19093764 CTCGGGCATGTGTTGGTGCCATATTTTTCTTCATCGGGGCACCATTATCGGAGCATCACCGGAGA
66 CTCGGGCAAGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCATCGGAGCATCACCGGAGA
* *
19093829 ACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGGGGGCCGGAGGGAAGTGCGCACATGATGTG
131 ACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGAGGGAAGTGCGCACATGATGTG
** *
19093894 CGATGGGTGCTAGTACTTAGCCATTATATTGGCCACCTATCACTCATCAAACCTCGAGAACTCAC
196 AAATGGGTGCTAGCACTTAGCCATTATATTGGCCACCTATCACTCATCAAACCTCGAGAACTCAC
19093959 ACACCCTTAAAGAGCATTTGAGATATTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACACCCTTAAAGAGCATTTGAGATATTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19094024 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGATTTTTTTTT
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGATATTTTTTT
* * * *
19094089 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
391 GGGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACTCCTTCCGAAAA
* ** * *
19094154 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATAAGTCGTCT
456 AATTTTAAAAAATCCTAAACCCCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACAAGTCGTCT
19094219 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
521 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
19094284 ATTGGCACGTAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCTGCAGCTTGC
586 ATTGGCACGCAAAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCTG-AGCTTGC
* ** * * *
19094349 GCATCCCGTCTCTCTGGTTGACGTAGTGCCCGCCCGA-TCGCCCTCCCGCTTGTATCGTCGGTAG
650 GCATCACGTCTCTCTGGCCGACGTAGTGCCCACCC-ACCCGCCCTCCCGCTTGTATCATCGGTAG
19094413 GCTTAG
714 GCTTAG
* * *
19094419 GCATACGAAGTTCATTCCCAGTCTAAGATCAGAGT-GGACCAAGGGTTGT-AGTAGCACATACTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCAGACCAAGGGTTGTGA-CAGCACATACT-
* * * * *
19094482 GG-CTCGGGCAAGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCTGAGCATCGCCGG
63 GGCCTCGGGCAAGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCATCGGAGCATCACCGG
* * * **
19094546 AGAACCTGACCGGTAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
128 AGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGAGGGAAGTGCGCACATGAT
* * * * * *
19094611 GTGAAATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACT
193 GTGAAATGGGTGCTAGCACTTAGCCATTATATTGGCCACCTATCACTCATCAAACCTCGAGAACT
* * *
19094676 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA-TGTTTGA
258 CACACACCCTTAAAGAGCATTTGAGATATTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
19094740 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGATATTTT
*
19094804 TTTGGGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGACAAAACTCCTTCCGA
388 TTTGGGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACTCCTTCCGA
* * *
19094869 AACAATTTTAAAAAAT-CTCAAACCCCAAAAAGTTT-AGAAAATCCTAAAAAATAGAAAACGAGT
453 AAAAATTTTAAAAAATCCT-AAACCCCAAAAAGTTTCA-AAAATCATAAAAAATAGAAAACAAGT
* *
19094932 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAGAA
516 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAA
19094997 ATGGCATTGGCACGCAAAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATGCATG-
581 ATGGCATTGGCACGCAAAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGAT-C-TGA
* * *
19095061 GCTTGCGCATCACGTCTCTCTGGCCGGCGTAGTGCCCACCCACCCGCCCTCCTGCTTGTTTCATC
644 GCTTGCGCATCACGTCTCTCTGGCCGACGTAGTGCCCACCCACCCGCCCTCCCGCTTGTATCATC
*
19095126 GGTTGGCTTAG
709 GGTAGGCTTAG
* * * *
19095137 GCATATGGAGTTCATTTCCAATCTAAGATTAGATC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC
19095172 GGACTGAGGT
Statistics
Matches: 675, Mismatches: 69, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
717 5 0.01
718 324 0.48
719 66 0.10
720 277 0.41
721 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (719 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGTGACAGCACATACTGGC
CTCGGGCAAGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCATCGGAGCATCACCGGAGA
ACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGAGGGAAGTGCGCACATGATGTG
AAATGGGTGCTAGCACTTAGCCATTATATTGGCCACCTATCACTCATCAAACCTCGAGAACTCAC
ACACCCTTAAAGAGCATTTGAGATATTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGATATTTTTTT
GGGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACTCCTTCCGAAAA
AATTTTAAAAAATCCTAAACCCCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACAAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCACGCAAAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCTGAGCTTGCG
CATCACGTCTCTCTGGCCGACGTAGTGCCCACCCACCCGCCCTCCCGCTTGTATCATCGGTAGGC
TTAG
Found at i:19095321 original size:26 final size:26
Alignment explanation
Indices: 19095292--19095347 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
19095282 TGGGTTGACT
*
19095292 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAATC
* * *
19095318 TAAGCATATGGAGTTCATTCGCAATC
1 TAAGCATACGAAGTTCATTCCCAATC
19095344 TAAG
1 TAAG
19095348 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAATC
Found at i:19097168 original size:708 final size:706
Alignment explanation
Indices: 19095391--19097433 Score: 2757
Period size: 708 Copynumber: 2.9 Consensus size: 706
19095381 GCTGGCTCAA
* *
19095391 GCATTAGGGTTCCGGTGATCGGGGGGGCCGGGGGTGGTGTGCGC-TCATGATGTGCAATGGGTGC
1 GCATTAGGGTTCCGATGATCGGGGGGGCC--GGGTGGTGTGCGCAT-ATGATGTGCGATGGGTGC
* * *
19095455 TGGTACTTGGCCCTTATATTGGCCCCCTATCTCTTATCAAACCTCAAGAACTCACA-CCCCTTAA
63 TGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
*
19095519 AGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
128 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
19095584 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AATTTTTTATGTGCACGCCA
193 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT-TGTGCATGCCA
* * * *
19095648 ACAAAAATAGAAGGATCACGTCTATCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
257 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
** * * ** *
19095713 AAT-CCTGAGCGACAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAA
322 AATCCCAAACCG-TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAA
* *
19095777 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATG
386 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
*
19095842 TAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
451 TA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
*
19095907 CTCTCTGGCCGGCGTAGT----GCCCGCCCG--CC-CGTTTCGTCGGTTGGCTTAGACATACGAG
515 CTCTCTGGCC-GCGTAGTGCCCGCCCGCCCGCCCCTCGTTTCGTCGGTTGGCTTAGGCATACGAG
* * *
19095965 TTCATTCCCAGTCTAAGATCGGA-TCAGACCGAGGGTT-TCTGTAGCACATGCTGGGCTCGAGCA
579 TTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGT-GGCAGCACATGCTGGGCTCGAGCA
* * * *
19096028 TGTACTGGTGCCGTATTTTTCTTCGTCGAAACACCATTGCCGGAGCATCGTCGGAGAACTTGACT
642 TGTACTGGTGCCGCATTTTTCTTCGTCGAAACACCATCGCCGGAGCAACG-C-GAGAACTCGAC-
19096093 AGC
704 AGC
* * * * *
19096096 GACATTTGGGTTCCGATGATC-GGGGGGCCGGGTGGTGTGCTCACATGATGAGCGATCGGTGCTG
1 G-CATTAGGGTTCCGATGATCGGGGGGGCCGGGTGGTGTGCGCATATGATGTGCGATGGGTGCTG
* * *
19096160 GTACTTGGCCCTTATATTGG-CCCTCTATCCCCCATCAAACCTCCAGAACTCACACTCCCTTAAA
65 GTACTTGGCCCTTATATTGGCCCCT-TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
* * *
19096224 GAGCATTTGAGATTTTACAGGTTTGCGGCCAATAGCCAATAAAGTGTCTGAAATGGGGACACTTT
129 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
19096289 TTTGAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
194 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * * * *
19096354 AAAAATGCAAGGATCACGTCTACCAGGTTTGGGGCCAAAAATCTTTTCGAAAAAATTTTAAAAAA
259 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
*** * * * *
19096419 TCTTGAACCGTAAAAAGTTTCAAAAAACATAAAAAATAGAAAACGAGTCGTCCTGCCATGAAACT
324 TCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACT
* **
19096484 TCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATTGGCACACAA
389 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAA
19096549 AACTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
454 AA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
** *
19096614 TCTGGCCAGTATAGTGCCCGCCCGCCCGTCCTTCCGTTCGTTTCGTCGGTTAGCTTAGGCATACG
518 TCTGGCC-GCGTAGTGCCCGCCCGCCCG-CC--CC--TCGTTTCGTCGGTTGGCTTAGGCATAC-
* *
19096679 GAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATGCTGGTCTCGGGC
576 GAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGC
** * * *** *
19096744 ATGTGTTGGTGCTGCATTTTTCTTTGTCGGGGCACCATCGCCGGAG-AAC-C-TG-AC-CGAC-G
641 ATGTACTGGTGCCGCATTTTTCTTCGTCGAAACACCATCGCCGGAGCAACGCGAGAACTCGACAG
19096803 -
706 C
* * *
19096803 GCATTGGGGTTCCGATGATCGGGGGGGCCGAGG-AGTGTGCGCATATGATGTGCGATGGGTGGTG
1 GCATTAGGGTTCCGATGATCGGGGGGGCCG-GGTGGTGTGCGCATATGATGTGCGATGGGTGCTG
* *
19096867 GTACTTGGCCCTTATATTGGCCCCTTATCCCTCACCAAACCTCAAGAACTCACACCCCCTTAGAG
65 GTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
* * *
19096932 AGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAAATGGGGACACTTT
130 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTT
*
19096997 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
194 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * *
19097062 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCAAAAAAATTTAAAAAAA
259 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
19097127 TCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACT
324 TCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACT
* * *
19097192 TCATGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGGCATGGT
389 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GGCA-CGT
* * * * *
19097256 AGAATGTGAAGATGTGCCCAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCATCT
452 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* *
19097321 CTCCGGTCCGCGTAGAGCCCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATAC
517 CTCTGG-CCGCGT--AG--TGCCCGCCCGCCCGCCC-CTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * *
19097386 AGAGTTAATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGCAG
576 -GAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAG
19097434 TAGGATCGGT
Statistics
Matches: 1178, Mismatches: 126, Indels: 65
0.86 0.09 0.05
Matches are distributed among these distances:
702 3 0.00
703 77 0.07
704 359 0.30
705 20 0.02
706 35 0.03
707 170 0.14
708 360 0.31
709 6 0.01
710 6 0.01
711 4 0.00
712 14 0.01
713 2 0.00
714 1 0.00
716 26 0.02
717 93 0.08
718 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (706 bp):
GCATTAGGGTTCCGATGATCGGGGGGGCCGGGTGGTGTGCGCATATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
CCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGCGTAGTGCCCGCCCGCCCGCCCCTCGTTTCGTCGGTTGGCTTAGGCATACGAGTTCATTC
CCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTACTGGT
GCCGCATTTTTCTTCGTCGAAACACCATCGCCGGAGCAACGCGAGAACTCGACAGC
Found at i:19098895 original size:709 final size:698
Alignment explanation
Indices: 19097466--19098999 Score: 1885
Period size: 709 Copynumber: 2.2 Consensus size: 698
19097456 GGGACCCGAC
* * * * * * * ** *
19097466 CGATCCTCGGCTTGCGCATCCTGCCCCTCTGGTCGGC-TGAGCGCCAGCAGGCTCGTTTCGTGGG
1 CGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGT-AGAGCCAACCCGCTCGTTTCGTCGG
* * * ***
19097530 TTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATTGGACCGAGGGTTACGGCAGCA
65 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCA
* * * *
19097595 TATACTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCAGGGCACCATCGCCAGAGCAT
130 CATACTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCAGAGCA-
* * *
19097660 CGCTGGAGAACCTGATCGGTAGCATTAGGGTTCCGACGATCAGGGGGGCCGGTGGGTATGCGCAC
194 -----GAGAACCTGACCGGCAGCATTAGGGTTCCGACGATCAGGGGGGCCGGGGGGTATGCGCAC
* * * * *
19097725 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATTCCTCATCAAACCTTGAG
254 ATGATGTGCGATCGGTGCTGGTACTTGGCCCTCATATTGGCCCCTATCCCCCATCAAACCTCGAG
19097790 AACTCACACCCCCTTAAAAAGCATTTCAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGT
319 AACTCACACCCCCTTAAAAAGCATTTCAGATTTTACAGGTTTCCTGCCAGTAGCCA-TAAAGTGT
* *
19097855 CTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAAC
383 CTGGAAAGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAC
* * * * *
19097920 TTTTTTGTGCATGCCAAAAAAAATGCAAGTATCACATCTTCCAGGTTTAGGGCGAAAACCCCTTC
448 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAACCCCTTC
* * *
19097985 CAAAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTGTCAAAAATAATGAAAAATAGAAAGCGAC
513 AAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTGTCAAAAATAATGAAAAATAGAAAACGAC
*
19098050 TCATCTTGCCATTAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
578 TCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
19098115 AATGGCATTGGCATGTAGAAATATGAAGATGTACCTAAACTCACCTACCACCCTAT
643 AATGGCAGTGGCATATAGAAATATGAAGATGTACCTAAACCCACCCACCACCCTAT
* * * *
19098171 CGATCCACGGCTTGCGCATCCTGTCTCTCTAGCCGGCGTAGAGCCCGCTCACCCGCTCATTTCGT
1 CGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGAG--C-C-AACCCGCTCGTTTCGT
** *
19098236 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATTGAGGGTTTCGGCA
62 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCA
* ** * *
19098301 GCACATGCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCC-G-G
127 GCACATACTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCAGAG
* * * *
19098364 -A-A-AACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGTCGGGGGGTGTGCGCACATG
192 CAGAGAACCTGACCGGCAGCATTAGGGTTCCGACGATCAGGGGGGCCGGGGGGTATGCGCACATG
19098426 ATGTGCGATCGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCCCATCAAACCTCGAGAA
257 ATGTGCGATCGGTGCTGGTACTTGGCCCTCATATTGG-CCCCTATCCCCCATCAAACCTCGAGAA
* *
19098491 CTCACA-CCCCTTAAAGAAGGCATTTGAGATTTTACAGG-TTCCTGCCAGTAATAGCC-TAATGT
321 CTCACACCCCCTTAAA-AA-GCATTTCAGATTTTACAGGTTTCCTGCCAG---TAGCCATAAAGT
19098553 GTCT-GAAAGGGGACACTTTTTTCAAATGGTCACAAAATTCCTTGTACACTTCGGAGTTTTTTAG
381 GTCTGGAAAGGGGACACTTTTTTCAAATGGTCACAAAA-T-CTTGTACACTTC-GAG-TTTTTAG
* *
19098617 CTG-ATTTTTTGTGTGCATGCCAAAAAAAATACAAGCGATCACATCTACCAAG-TTGGGGCCAAA
442 CTGAACTTTTT-TGTGCATGCCAAAAAAAATACAAG-GATCACATCTACCAAGTTTAGGGCCAAA
* * * * *
19098680 ACTCCTTTCGAAAAAAATTTTAAAAAAATACTCGAACGCG--AAATGGGTTCAAAAATCATGAAA
505 AC-CCCTTC-AAAAAAATTTTAAAAAAAT-CCCGAAC-CGTAAAAAGTG-TCAAAAATAATGAAA
* * * *
19098743 AGTAGAAAACGAGTCGTCTTGCACATGAAACTTTCACGTGAAGGCCTTAAGGGACCA-TGTATGA
565 AATAGAAAACGACTCATCTTGC-CATGAAAC-TTCACATGAAGG-CTTAAGGGACCATTGTATGA
*
19098807 ATTTACAAGCCATAAAAAATGGTAGTGGCATATAGAAATATGAAGATGTACCTAAACCCACCCAC
627 ATTTACAAGCCAT-AAAAATGGCAGTGGCATATAGAAATATGAAGATGTACCTAAACCCACCCAC
19098872 CACCCTAT
691 CACCCTAT
* * * * * * *
19098880 CTATCCACTGCTTGCGGATCCCGCCTCTCTGGCCGGTGTAGTGCCAACCCGCTCGTTTCGTCGAT
1 CGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGAGCCAACCCGCTCGTTTCGTCGGT
* * * * *
19098945 CGGCTTAGGCATACGGAGTTCACTCCCAGTCTTAGATC-AGATCACACCGAGGGTT
66 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTT
19099000 GCTATAGCAA
Statistics
Matches: 713, Mismatches: 89, Indels: 54
0.83 0.10 0.06
Matches are distributed among these distances:
698 97 0.14
699 75 0.11
700 28 0.04
701 11 0.02
702 14 0.02
703 44 0.06
704 19 0.03
705 120 0.17
706 41 0.06
707 12 0.02
708 33 0.05
709 219 0.31
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (698 bp):
CGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGAGCCAACCCGCTCGTTTCGTCGGT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAC
ATACTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCAGAGCAGA
GAACCTGACCGGCAGCATTAGGGTTCCGACGATCAGGGGGGCCGGGGGGTATGCGCACATGATGT
GCGATCGGTGCTGGTACTTGGCCCTCATATTGGCCCCTATCCCCCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAAAGCATTTCAGATTTTACAGGTTTCCTGCCAGTAGCCATAAAGTGTCTGGAAAG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAACCCCTTCAAAAAAAT
TTTAAAAAAATCCCGAACCGTAAAAAGTGTCAAAAATAATGAAAAATAGAAAACGACTCATCTTG
CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAG
TGGCATATAGAAATATGAAGATGTACCTAAACCCACCCACCACCCTAT
Found at i:19100515 original size:898 final size:897
Alignment explanation
Indices: 19098248--19102981 Score: 5848
Period size: 900 Copynumber: 5.2 Consensus size: 897
19098238 GTTGGCTTAG
* ** * *
19098248 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATTGAGGGTTTCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
*
19098313 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---T-------T-GCCGGAAA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
19098367 ACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGTCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
* * * *
19098432 GATCGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCACA
196 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* ** ** *
19098497 -CCCCTTAAAGAAGGCATTTGAGATTTTACAGG-TTCCTGCCAGTAATAGCCTAATGTGTCTGAA
261 CCCCCTTAAAG-A-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCA-ATTAAAGTGTCTGAA
*
19098560 A-GGGGACACTTTTTTCAAATGGTCACAAAATTCCTTGTACACTTCGGAGTTTTTTAGCTG-ATT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAA-T-CTTGTACACTT-TGA-TTTTTTAGCTGAATT
* *
19098623 TTTTGTGTGCATGCCAAAAAAAATACAAGCGATCACATCTACCAAG-TTGGGGCCAAAACTCCTT
384 TTTT-T-TGCATGCCAACAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* ** * *
19098687 TCGAAAAAAATTTTAAAAAAATACTCGAACGC-GAAATGGGTTCAAAAATCATGAAAAGTAGAAA
446 TCG-AAAAAATTTT-AAAAAAT-CTCGAAC-CATAAAAAGTTTCAAAAATCATGAAAAATAGAAA
19098751 ACGAGTCGTCTTGCACATGAAACTTTCACGTGAAGGCCTTAAGGGACCA-TGTATGAATTTACAA
507 ACGAGTCGTCTTGC-CATGAAAC-TTCACGTGAAGG-CTTAAGGGACCATTGTATGAATTTACAA
* * ** * * *
19098815 GCCATAAAAAATGGTAGTGGCATATAGAAATATGAAGATGTACCTAAACCCACCCACCACCCTAT
569 GCCAT-AAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * **
19098880 CTATCCACTGCTTGCGGATCCCGCCTCTCTGGCCGGTGTAGT--------GCCAACCCGCTCGTT
633 CGATCCACCGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCTCGTT
* * * * * ** *
19098937 TCGTCGATCGGCTTAGGCATACGGAGTTCACTCCCAGTCTTAGATCAGATCACACCGAGGGTTGC
698 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGC
* * * * * * * *
19099002 TATAGCAAGATCGGCAGCACACAAAGGGGGACCCAACCGATCCCCGGCTTGCCCATCCCGCCCCT
763 GACAGCAAGATCGGCAGCACATAGAGGGGGACCCAATCGATCCCC-GCTTGCACATCCCACCCTT
** * * * ** *
19099067 CTGGCAAGCTGAGAGCCTGCACGCTTATTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCA
827 CTGGCCGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
19099132 GTCTAA
892 GTCTAA
* * * *
19099138 GCGTACGGAGTTCATTCCCAGTCTAATATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
19099203 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTTGGAGCATCACCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** * * *
19099268 ACCTGACCGACGGCATTGGGGTTCCGGTGGTC-AGGGGGCCGAGGGGGTGTCCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGTG
*
19099332 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
19099396 ACCCCATTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCGAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
* *
19099461 GGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGTTTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTT-
* * * ** *
19099526 TGCATGCCAAAAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAAATCCTACCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
***
19099591 ATTTTAAAAAATC-CAGAACCATAAAAAGTTTCGTGAATCATGAAAAATAGAAAACGAGTCGTCT
454 ATTTTAAAAAATCTC-GAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
19099655 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTAAAAGGCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
19099720 ATTGGCACGTAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTAGCGATCCACGGCTTGC
583 ATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACCGCTTGC
*
19099785 GCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTA
648 GCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * *
19099850 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGAGGCAGCAAGATCGGC
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAAGATCGGC
* * *
19099915 AGCACATAGAGGGGGACCCAACCGATCCCCTGGTTGCACATCCC-CCCTTGTGGCCGGCTGAGCG
778 AGCACATAGAGGGGGACCCAATCGATCCCC-GCTTGCACATCCCACCCTTCTGGCCGGCTGAGCG
* * ** *
19099979 CCCGTAGGCTTATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
19100035 GCATATAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19100100 CTC-GAGCATGTGCTGGTGCCACATTTTTCTTTGCCGAGGCACCATCGTCGGAGCATCGCCGGAG
66 CTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* *
19100164 AACCTGATCGACGGCTTTGGGGTTCCGACGATCGGGGGGGCCAGGAGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGG-GGGTGTGCGCACATGATGT
*
19100229 GCAACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19100294 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAATGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
*
19100359 TGGGGACACTTTTTTCAAATGGTCACAAAAACTTGTACACTTTGATTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTT
*
19100424 TGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
*
19100489 ATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
19100554 GCCATGAAACTTTACGTGAAGCCTTAGGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
19100619 TTGGCACATAAAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACCGCTTGCG
584 TTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACCGCTTGCG
*
19100684 CATCCCGTCTCTCTGGCCGACGTGGTGCCCGCCTGCCCGCCTGCCCGCCCGCCCGCCCACCCGCT
649 CATCCCGTCTCTCTGG-C--C--GGT----G--T---AG--TGCCCGCCCGCCCG----CCCGCT
* * * * *
19100749 CGTTTCATCGGTTGGGTTAGGCATACGCAGTTCATTCCTAGTCTAAGATC-GAACC-GAATCGAG
694 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACT-GAG
* * * * * * * *
19100812 GATTTCTACAGCAAGATCGACAGCACGTGGAGGGGGA-CCAGGTTGAT-CCC-C--G-AC-TCCC
757 GGTTGCGACAGCAAGATCGGCAGCACATAGAGGGGGACCCA-ATCGATCCCCGCTTGCACATCCC
* *
19100870 ACCCTTTTGGTCGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
821 ACCCTTCTGGCCGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
19100935 TTCCCAGTCTAA
886 TTCCCAGTCTAA
* * * *
19100947 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
19101012 CTC-GAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAG
66 CTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
**
19101076 AACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTTGTGCGCACATGTT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-A-----G--G-G-G-----G-T
* * *
19101141 GTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCTCTCTATCCCTTATCA
179 GTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
19101206 AACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTAA
244 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAA
* * *
19101271 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTT
309 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTT
* *
19101336 TAGCTGAATTTTTTTTTGCATGCCAACAAAAATAGAAGGATCATGTCTACCAAGTTTGGGGCCAA
374 TAGCTGAA-TTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * ** *
19101401 AACGCCTTTCGAAAAAATCTTGAAAAATC-CGAAATCGA-AAAAAGTTTTGAAAATCGTGAAAAA
438 AACTCCTTTCGAAAAAATTTTAAAAAATCTCG-AA-CCATAAAAAGTTTCAAAAATCATGAAAAA
* * *
19101464 TAGAAAACAAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTA
501 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
19101529 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
566 CAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * ** * ** *
19101594 GTCGATCCACGGCTTGTGCATCCCATCTCTCTGGCTGACGTAATGCCCGCCCAACCGTCCGCTCG
631 ATCGATCCACCGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCTCG
*
19101659 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTT
696 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
* * * * * * ** * * * *
19101724 GCGACAGTCGA-ATCAGTAGCACACAAAGGGGGACCCGATCTTTCCTCGACTTACGCATCCCGCC
761 GCGACAG-CAAGATCGGCAGCACATAGAGGGGGACCCAATCGATCCCCG-CTTGCACATCCCACC
* * * *
19101788 CTTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTTATTC
824 CTTCTGGCCGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
*
19101852 CTAGTCTAA
889 CCAGTCTAA
* * ** * *
19101861 GCATACGGAGTTCATTCCCAGCCTAAGATGGGACTGGACCAAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * ** * *
19101926 CTCACGCATGTGTTGGTGTCGCATTTTTCTTTGTCGGGGTACCATCGCCTAAGCATCGCTGAAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
19101991 ACCTGACCGATGGCATTGGGGTTCCAACGATCGGGGGGGACAGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
*
19102056 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAGTCAAACCTC-ATTGAACTC
196 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA-TCAAACCTCGA--GAACTC
* *
19102120 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTGCTGCCAGTAGC-CTTAAAGTGTCCCG
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGCCAGTAGCAATTAAAGTGT-CTG
*
19102184 AAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTCGAGTTTTTAGCTGAATTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT-GATTTTTTAGCTGAATTT
* * * * *
19102248 TTTCTGCATGCCAACAAAAATACAAAGATCATGTATACCAAGTTTGGGGCCAAAACGCC-TTCTG
385 TTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-G
* ** * * * *
19102312 AAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCACAAATCGTGAAAAATAGAAAATGCGTC
449 AAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
**
19102377 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAATGACCATTGTATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
19102442 TGGCATTGGCATGCAAAAATATGAAGGTGTGCCTAAACCCACCTGCCACCCTATCGATCCACCAC
579 TGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACCGC
* * *
19102507 TTGCGCATCTCGTCTCTCTGGCCGGTGTAGTGCCCGCCTGCCCGTCCGCTCGTTTCGTCGGTTGG
644 TTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* *
19102572 CTTAGGCATACGGAGTTCATTCTCAGTCTAAGATC-GCACCGGACTGAGGGTTGC-AGCAGCAGG
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACTGAGGGTTGCGA-CAGCAAG
* * * * ** * * * *
19102635 ATCGACAGCACGTGGAGGGGAACCCGGTCGATCCCCGACTTGCGCGTCCCACCCCTCTGGCTGGC
772 ATCGGCAGCACATAGAGGGGGACCCAATCGATCCCCG-CTTGCACATCCCACCCTTCTGGCCGGC
*
19102700 TGAGCGCCCGCAAGCTCGTTTCGTGGGTT-ACTTAGGCATACGGAGTTCATTCCCAATCTAA
836 TGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19102761 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCAAACCGATGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
19102826 CTC-GCGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGTATCGCCGAAG
66 CTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * *
19102890 AACCTGACCGGCAGCATTGGGGTTCCGGCGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGT
*
19102955 GCGATGGGTGCTGGTACTTGGCCCTTA
194 GCAATGGGTGCTGGTACTTGGCCCTTA
19102982 AANNNNNNNN
Statistics
Matches: 3355, Mismatches: 387, Indels: 193
0.85 0.10 0.05
Matches are distributed among these distances:
890 203 0.06
891 29 0.01
892 10 0.00
893 44 0.01
894 7 0.00
895 24 0.01
896 53 0.02
897 220 0.07
898 499 0.15
899 215 0.06
900 733 0.22
901 179 0.05
903 3 0.00
904 1 0.00
905 1 0.00
906 1 0.00
907 1 0.00
908 82 0.02
909 11 0.00
911 5 0.00
912 237 0.07
913 3 0.00
914 183 0.05
915 55 0.02
917 10 0.00
918 90 0.03
919 1 0.00
920 2 0.00
921 1 0.00
923 1 0.00
926 1 0.00
927 195 0.06
928 253 0.08
929 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
TTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACCGCTTGCGCA
TCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAAGATCGGCAGC
ACATAGAGGGGGACCCAATCGATCCCCGCTTGCACATCCCACCCTTCTGGCCGGCTGAGCGCCCG
CAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19100722 original size:8 final size:8
Alignment explanation
Indices: 19100709--19100740 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
19100699 GCCGACGTGG
19100709 TGCCCGCC
1 TGCCCGCC
19100717 TGCCCGCC
1 TGCCCGCC
19100725 TGCCCGCC
1 TGCCCGCC
*
19100733 CGCCCGCC
1 TGCCCGCC
19100741 CACCCGCTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.00, C:0.66, G:0.25, T:0.09
Consensus pattern (8 bp):
TGCCCGCC
Found at i:19100957 original size:26 final size:26
Alignment explanation
Indices: 19100921--19100973 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19100911 GTTGACTTAG
19100921 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19100947 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19100973 G
1 G
19100974 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19101141 original size:13 final size:13
Alignment explanation
Indices: 19101125--19101157 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
19101115 GCCGAGGGGG
19101125 GTTGTGCGCACAT
1 GTTGTGCGCACAT
19101138 GTTGTGCGCACAT
1 GTTGTGCGCACAT
*
19101151 GATGTGC
1 GTTGTGC
19101158 AATGGGTGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.15, C:0.21, G:0.33, T:0.30
Consensus pattern (13 bp):
GTTGTGCGCACAT
Found at i:19101864 original size:25 final size:26
Alignment explanation
Indices: 19101836--19101887 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19101826 GTTGACTTAG
* * *
19101836 GCATAC-GAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
19101861 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
19101887 G
1 G
19101888 ATGGGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:19102771 original size:26 final size:26
Alignment explanation
Indices: 19102735--19102787 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19102725 GGTTACTTAG
*
19102735 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19102761 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19102787 G
1 G
19102788 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19111845 original size:26 final size:26
Alignment explanation
Indices: 19111793--19111845 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19111783 GTTAAATTAG
* * *
19111793 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
19111819 GCATACAGAGTTCTTTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19111845 G
1 G
19111846 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19115620 original size:884 final size:876
Alignment explanation
Indices: 19113817--19120352 Score: 5603
Period size: 884 Copynumber: 7.5 Consensus size: 876
19113807 AACTGCAAGG
* * * * *
19113817 ATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACTAGTTGTGTTGCCCTGAAAC
1 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
19113882 TT-AAGCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
66 TTCACG-TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
* *
19113946 AAAAATATGAAGATGTACCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
130 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
19114010 TCTCTGGCCGACATAGTGCTCGCCCGCCCGCCCGTCCGCTCCTTTTGTCGGTTGGCTTAGGCATA
195 TCTCTGGCCGACGTA--G-TCACCCGCCCGCCCGT----TCGTTTTGTCGGTTGGCTTAGGCATA
* * * * * * * * * * ** *
19114075 CGAAGTTAATTCCCATTCAAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGTAGCACA
253 CGGAGTTCATTCCCAGTCTAAGATTAGA-CGGACCGAGAGTTGCGGCAGTAGGATCGACAGCACG
* * * * * * *
19114140 CAGAGAAGGACCCAGCCAATCCCTGGCTAGAGCATCCCGCCCTTCTGGCCGGCTAAGCGCCCGCA
317 CAGAGAGGGACCCAGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCA
* * * * *
19114205 CGCTCATTCCGTGGGTTGACTTAGGCATACAGAGTTCATTTCCAATCTAAGCATACGGAGTTCGT
382 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAG-A-ACGGA---C--
** * * * * *
19114270 TCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGTTGG
440 -CTAAACTAAGATCGGA-CTGGCCG-GGG-TAC-ACAGCACATGCTGGGCTCGAGCATGTGCTGG
** * * *
19114335 TGCCGCATTTTTCTTCCCCGGGGCACCATCATCGGAGCATCACCGGAGAACTTAACCGACGGCAT
500 TGCCGCATTTTTCTTCGTCGGGGCACCATCAGC-GCG-A-CA---GAGAACCTAACCGACGGCAT
* * * *
19114400 TAGGGTTCCAACGATCGGGGGGG-CTGGGGGGTGTGCTCACATGATGTGCGATGGGTGCTGGTAC
559 TGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
19114464 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCA
624 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
19114529 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCA
689 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * **
19114594 AATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGATGAATTGTTTTGCACATGCCAACAAAAA
754 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAA
* * * *
19114659 TACAAAGATCACATCTACCAAGTTTGTGTCCAAAACTCCTTCTGAAAAAATTTTAAAAA
818 TACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
19114718 ATCTCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
1 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* **
19114783 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCACGTA
66 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
* * *
19114848 GAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCTCGTCT
131 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
** * * *
19114913 CTCTGGCCGGTGTAGT-ACCTGCCTGCCCGTTCGTTTTGTCGGTTGGCTTAGACATACGGAGTTC
196 CTCTGGCCGACGTAGTCACCCGCCCGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTC
* * ** * * *
19114977 ATTCCCAGTCTAAGATTGGATTGGACCGAGAGTTGCAACAGTAGAATCAACAGCACGCAGAGGGG
261 ATTCCCAGTCTAAGATTAGA-CGGACCGAGAGTTGCGGCAGTAGGATCGACAGCACGCAGAGAGG
* * *
19115042 GACCCGGCCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGTGCCCGCACGCTCATT
325 GACCCAGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCATT
* * *
19115107 TCGTGGGTTGAGTTAGGCATACGGAATTCATTCCTAGTCTAAGCAAACGGAGTTCATTCCTAATC
390 TCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAG--AAC-G-G---A--CCTAAAC
* *
19115172 TAAGATCGGATTGGACCGAGGGCTACAACAGTACATGCTGGGCTCGAGCATGTGCTGGTGCCGCA
446 TAAGATCGGACTGG-CCG-GGG-TAC-ACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCA
* * *
19115237 TTTTTCTTCGTCGGAGAACCATCA-C-CGA-A-AG-ACCTAACCGGCGGCATTGGGGTTCCGACG
507 TTTTTCTTCGTCGGGGCACCATCAGCGCGACAGAGAACCTAACCGACGGCATTGGGGTTCCGACG
* *
19115297 ATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAGTTGGCCCTTATAT
572 ATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
19115362 TGGCCCCCTATCCCTAATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTT-ACGATTTTA
637 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA-GATTTTA
* *
19115426 TAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGG-CACTTTTTTCAAATGGTCACAAA
701 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
19115490 ATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGTATCAC
766 ATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* *
19115555 GTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAA
830 ATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * * * * *
19115602 TTCCCGAACCGCAAAAAGTTTTAACATTCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAC
1 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
**
19115667 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
66 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
* * * * *
19115732 GAAATATGAAGATGCGCCTAAACCCACCAACCACCCTATCGATTCACGACTTGCGCATCTCGTCT
131 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * * *
19115797 CTCTAGTCGGCGTAGT-ACCCGCCCGCCCGCTCGTTTCGTCAGTTGCCTTAGGCATACGGAGTTC
196 CTCTGGCCGACGTAGTCACCCGCCCGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTC
* * * ** *
19115861 ATTCCCAGTCTAAGATTAGACAGGACTGAGGGTTGTGGCAGTAGGATCGACAAAACGCAAAGAGG
261 ATTCCCAGTCTAAGATTAGAC-GGACCGAGAGTTGCGGCAGTAGGATCGACAGCACGCAGAGAGG
* * * * *
19115926 GACCCAACCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCAGCTGAGTGCCCGCACACTCGTT
325 GACCCAGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCATT
* * * *
19115991 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCGGACC-AAACCAAG---GG
390 TCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGAACGGACCTAAACTAAGATCGG
* * * *
19116052 -CT-G-C--GG----CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATGTTTCTTCATCG
455 ACTGGCCGGGGTACACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * *
19116108 GGGCACCA-CCGC-CGAAGCATCGCTGGAGAACTTGACCGACGGCATTGGGGTT-CTAGCGATCG
520 GGGCACCATCAGCGCG-A-CA------GAGAACCTAACCGACGGCATTGGGGTTCCGA-CGATCG
* *
19116170 GGGGGGCCGGGGGGGTTTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
576 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
19116235 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
641 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
19116300 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTT
706 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
19116365 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAGTACAAGGATAACATCT
771 GTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACATCT
* * **
19116429 ACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAAATTAAAAAAA
834 ACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAAATTTTAAAAA
* * *** *
19116473 ATCCAGAATCGTAAAAAGTTTCAAAAATCATGAAATGCAGAAAAGGAGTCGTCTTGCCATGAAAC
1 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
19116538 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGCACATA
66 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
* *
19116603 GAAATATGAACAT-TGCCTAAACCCA-CTACCACCCTAATCGATCC-CGGCTTGTCGCA-CCCAT
131 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCCACGGCTTG-CGCATCCCGT
* *
19116664 CTCTC-GGCCGACGTAGTGCACGCCG-CCGCACGTCCGCTTCTTTGTCGGTTGGCTTAGGCATAC
194 CTCTCTGGCCGACGTAGT-CAC-CCGCCCGCCCGTTCG--T-TTTGTCGGTTGGCTTAGGCATAC
* ** * * *
19116727 AGAGTTCATT-CCA-TCTAAGA-TCCA-GG-CC-A-AG--ACTG-AG--GGATCGGCAGCACG-A
254 GGAGTTCATTCCCAGTCTAAGATTAGACGGACCGAGAGTTGCGGCAGTAGGATCGACAGCACGCA
* * * * *
19116779 TG-G-GGGAACCTGCC-A-CCC-CGC-TGCG-----CGCCCC-ATAG-CGG-T-A-----CGCTA
319 -GAGAGGGACCCAGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGC-A
* * * * *
19116824 CG-TAAATTCGCGGG-T-A-TTA-GCATAC-GAAGTTTATTCCCAGTCTAAGATCGGACCTGAAA
382 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAA-TTCATTCCCAGTCTAAGAACGGACCT-AAA
* * ** * * * * *
19116883 CGAGGATC-GA-TGGTTGTGGT----AGCACATCCTAGGCTCGGGCATGTGCT-GTGCCACATTT
445 CTAAGATCGGACTGGCCGGGGTACACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTT
* * * *
19116941 TTCTTCGTCGGGGCACCATC-GTCGGAGCATCACTAGAGAACCTGACTGACGGCATCGGGGTTCC
510 TTCTTCGTCGGGGCACCATCAG-C---GC--GAC-AGAGAACCTAACCGACGGCATTGGGGTTCC
* * * *
19117005 GACGATTGGGGGGGCC-GGGGGGTTTGCGCACATGATGTGCGATTGGTGCCGGTACTTGGCCCTT
568 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
19117069 ATATTGGCCCCCTATCCCTCATCCAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATT
633 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
19117134 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCAC
698 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
19117199 AAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTGCTGTGCATGCCAAGAAAAATACAAGGAT
763 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT-TTGTGCATGCCAACAAAAATACAAGGAT
* *
19117264 CACGTCTACCAAGTTTGGGGCCAAAACTGCTTCCGAAAAAATTTT-AAAA
827 CACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
** * ** * * * ** *
19117313 ATCCCGAACCATTGT-ATGAGTTT-ACAAGCCAT-AAAAAT-G---GC-A-TTGGCACG-TA-GA
1 ATCCCGAACC---GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * ** *** ** * * *
19117367 AA--T-A--TGAA-G---ATGTG-CC--TAAACCCACCTACCA-CCCT----ATCG-A-T--C-C
63 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *** * * *** *** ** *
19117410 AC-G-ACT-TG-CGCATCCCGT-CTCTCTGGCCGACGTAGTGCCCGCCCG--CC-C-GCCCGCTC
128 ACAGAAATATGAAG-AT---GTGC-CT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * ** * * ** ** ** * **** * * * * * *
19117466 ATTTCATCGAT-T-G--G-CTTAGGCATACG-GAGTTCATTCCCAGTCTAAGATCGGATCA-G-A
187 ATCCCGTCTCTCTGGCCGACGTAGTCACCCGCCCGCCCGTTCGTTTTGT-CGGTTGGCTTAGGCA
* * * * * *
19117523 T-CGAAGGTTGCA---GCAG-C-AAGATT-GACCGCACAC-AGAG--GGGGACCCG-ACTGATC-
251 TACGGA-GTT-CATTCCCAGTCTAAGATTAGA-CGGAC-CGAGAGTTGCGG--CAGTA-GGATCG
* * ** * * * * * **
19117576 -C-TC-GGC-TTG-TGCATCTC-GCC--TCTCTGGCCGGTTGAGCGCCCA-CACGCTCATTTCAT
309 ACAGCACGCAGAGAGGGA-CCCAGCCGATCCCTGG-C--TT--GCG--CATCCCGC-C-CCTC-T
** * * * * * ** * *
19117632 GGGTTGACTTAG-GCATACGGA-GTTCATTT--TCAG-T--C-TAAGCATACGGAGTTCATTCCC
363 -GGCCGGCTGAGTGC--CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCC
* * * ** * * * *
19117689 AGTCTAAGATCGG------ACT-AGA-CCGA-AGGTTGTGG----CAGCACATGTTGGACTCGGG
425 AGTCTAAGAACGGACCTAAACTAAGATCGGACTGGCCGGGGTACACAGCACATGCTGGGCTCGAG
* * * * *
19117741 CATGTTCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCAGAGAACCTGA
490 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C--AGC-GCGACAGAGAACCTAA
** * * *
19117806 CCGACGGCATTGGGGTTCCGGTGATCGGGGGAGCCGAGCAGGGGT-TGCGCACATGATGTGCAAT
549 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-G-GGGGGTGTGCGCACATGATGTGCGAT
* * *
19117870 GGGTGATGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGATAACTCACACCC
612 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
19117935 CCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGGCATTAAAGTGTTTGAAATGGGG
677 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * **
19118000 ACACTTTTTTCAAATAGTCACAAAATCTTGTACAATTCGAGTTTTTAATTGAATTTTTTTGTGCA
742 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCA
* * * *
19118065 TGCCAA-AAAAATACAAGGATCATATCCACCAAGTTTGGGGCCAAAACTGCTTCCAAAAAAATTT
806 TGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
19118129 TAAAAA
871 TAAAAA
* *
19118135 ATCCCGAACCGTAAAAAGTTTCTAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
1 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
**
19118200 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
66 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
* * * * * * **
19118265 AAAATATGAAGATGTGCCGACACCCACCTACCACCATATCGATTCAAGGCTTGCGCATCCCACCT
131 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * * *
19118330 CTCTAGTCGGCGTAGTGCCCGCCTGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
196 CTCTGGCCGACGTAGT-CAC-CC-GCCCGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATACGGAG
* * *
19118395 TTCATTCCCAGTCTAAGATCT-GACCGAACCGA-AGGTTGCGGCAGCAGCATCGACAGCACGCAG
258 TTCATTCCCAGTCTAAGAT-TAGA-CGGACCGAGA-GTTGCGGCAGTAGGATCGACAGCACGCAG
* * * ** * * *
19118458 AGGGGGA-CCTGATCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCCGGTTGAGTGCCCGTACG
320 AGAGGGACCCAG-CCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACG
* * * * *
19118522 CTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACGGAGTTCATTC
384 CTCATTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA-GA-AC-G-G---A--C
** * * * * * *
19118587 CTAGTCTAAGATCGGACCGAACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATATGTTGGT
440 CTAAACTAAGATCGGACTG-GCCG-GGG-TAC-ACAGCACATGCTGGGCTCGAGCATGTGCTGGT
* * * * * * **
19118652 GCAGCATTTTTCTTCATC-GGGCACCGTC-GC-CGGAGCATCGCTGGAGAACCTGACTGGCGAAA
501 GCCGCATTTTTCTTCGTCGGGGCACCATCAGCGC-GA-CA------GAGAACCTAACCGACGGCA
* * *
19118714 TTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGAGTGTGCGCACATGATGTGTGATGGTTGCTAG
558 TTGGGGTTCCGACGATCGGGGGGGCC-GGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
19118778 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAACTCACACCCCTTTAAAG
621 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG-AACTCACACCCCCTTAAAG
19118843 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
685 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
19118908 TTCAAATGGTCACAAAATCTT-TCACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCGAA
750 TTCAAATGGTCACAAAATCTTGT-ACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCC-AA
**
19118972 -AAAAATACAAGGATCACATCT----A--TTGGGGCCAAAAAACCTTCCGAAAAAATTTTAAAAA
812 CAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
19119030 ATCCCGAACCATAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAAC
1 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* **
19119095 TTCACGTGAAGGCTTAAGGGACCATTGTATGAAGTTACAAGCCATAAAAATGGCATTGGCACTTA
66 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
* * * * *
19119160 GAAATATAAAAAAGTGCCTAAACCCACCTACTACCCTATCGATCCACGGCTTGCGCATCCCGTAT
131 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * *
19119225 CTTTGGCCGACGTAGTGCCCGCTCGCCCGCCTGCCCGCTCGTTTCGTCGATTGGCTTAGGCATAC
196 CTCTGGCCGACGTAGT-CAC-C-CG--C-CC-GCCCGTTCGTTTTGTCGGTTGGCTTAGGCATAC
* ** * * *
19119290 GAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGTAGGATCGACAGCACGC
254 GGAGTTCATTCCCAGTCTAAGATTAGA-CGGACCGAGAGTTGCGGCAGTAGGATCGACAGCACGC
* * * * * * * *
19119355 AGAG-GAAGACCCGGCTGATCCCCGGCTTGCGCATCCCGTCTCTCTAGCCGGCTGAGCGCCCGCA
318 AGAGAG-GGACCCAGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCA
*
19119419 CGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
382 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAA-TTCATTCCCAGTCTAAG-A-ACG--G---A
* ** * * * * * * * *
19119483 TTCCCAGTCTAAAATTGGACCGAACTGAAGGTTACGACAGCACATGCTGGGCTCGGGCATTTGCT
439 --CCTAAACTAAGATCGGACTG-GCCG--GGGTAC-ACAGCACATGCTGGGCTCGAGCATGTGCT
* * * * * *
19119548 GGTGCCGTATTTTTCTTCGTCGGGGCACCATC-GTCAGAGCATCCTCGGAGAACCTGACCGGCGA
498 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCAG-C-GCG-A----CAGAGAACCTAACCGACGG
** * *
19119612 CATTGGGGTTTTGACGATCGGGGGGGCC--GGGGG-GTGCGCACAAGATGTGCAATGGGTGCTGG
556 CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
19119674 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAATA
621 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
19119739 GTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
686 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
19119804 TCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAA
751 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAA
* ** * * * *
19119869 AAATAAAAGGATCAGGTCTACCAAGTTTTGGGCCAAAAATCCATCTGAAAAAATTTTAAAAA
815 AAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * *
19119931 ATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTTGTCTTGCCCTGAAAC
1 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
19119996 TTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACATA
66 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
19120061 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
131 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * ** *
19120126 CTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTATTTTTGTCAGTTGGCTTAGGCATACGGAG
196 CTCTGGCCGACGTAGT---CACCCGCCCGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATACGGAG
** * * * * *
19120191 TTCATTCCCAGTCTAAGAGCAGACCGGGCCGAGGGTTGCGGTAGCAGGATCAACAGCA--CAGAG
258 TTCATTCCCAGTCTAAGATTAGA-CGGACCGAGAGTTGCGGCAGTAGGATCGACAGCACGCAGAG
* * * * * **
19120254 AGGGGACCC-GACCGATCCCCGCCTTACGCATCCCGCCCCTTTGGCCGGCTAAAAGCCCGCACGC
322 A-GGGACCCAG-CCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGC
*
19120318 TCA-TTCGGTGGGTTGACTTAGGCATACGGACTTCA
385 TCATTTC-GTGGGTTGACTTAGGCATACGGAATTCA
19120353 CGTGAACCTG
Statistics
Matches: 4611, Mismatches: 721, Indels: 611
0.78 0.12 0.10
Matches are distributed among these distances:
797 5 0.00
798 6 0.00
799 6 0.00
800 6 0.00
801 8 0.00
802 3 0.00
803 15 0.00
804 5 0.00
805 7 0.00
806 1 0.00
807 8 0.00
808 7 0.00
809 9 0.00
810 9 0.00
811 4 0.00
812 5 0.00
813 6 0.00
814 1 0.00
815 3 0.00
816 3 0.00
817 1 0.00
818 1 0.00
819 39 0.01
820 85 0.02
821 61 0.01
822 223 0.05
823 17 0.00
824 1 0.00
825 1 0.00
826 5 0.00
827 34 0.01
828 7 0.00
829 7 0.00
830 7 0.00
832 5 0.00
833 2 0.00
834 4 0.00
835 7 0.00
836 30 0.01
837 3 0.00
838 7 0.00
839 5 0.00
840 30 0.01
841 21 0.00
842 266 0.06
843 73 0.02
844 31 0.01
845 1 0.00
846 1 0.00
847 5 0.00
848 5 0.00
849 8 0.00
851 11 0.00
852 4 0.00
853 2 0.00
854 6 0.00
855 17 0.00
856 5 0.00
857 3 0.00
858 62 0.01
859 4 0.00
860 15 0.00
861 2 0.00
862 3 0.00
863 8 0.00
864 11 0.00
865 6 0.00
866 4 0.00
867 8 0.00
868 28 0.01
869 221 0.05
870 160 0.03
871 156 0.03
872 12 0.00
873 33 0.01
874 37 0.01
875 7 0.00
876 4 0.00
877 3 0.00
878 5 0.00
880 1 0.00
881 1 0.00
882 2 0.00
884 536 0.12
885 150 0.03
889 3 0.00
890 3 0.00
891 5 0.00
892 3 0.00
893 5 0.00
894 175 0.04
895 469 0.10
896 147 0.03
897 89 0.02
898 36 0.01
899 365 0.08
900 225 0.05
901 390 0.08
902 55 0.01
903 3 0.00
906 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (876 bp):
ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGACGTAGTCACCCGCCCGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATTAGACGGACCGAGAGTTGCGGCAGTAGGATCGACAGCACGCAGAGAGGG
ACCCAGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCATTT
CGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGAACGGACCTAAACTAAGATCGGA
CTGGCCGGGGTACACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
GGCACCATCAGCGCGACAGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGG
GCCAAAACTCCTTCCGAAAAAATTTTAAAAA
Found at i:19116636 original size:869 final size:839
Alignment explanation
Indices: 19115268--19117322 Score: 2505
Period size: 842 Copynumber: 2.4 Consensus size: 839
19115258 TCACCGAAAG
* * *
19115268 ACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
1 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTTTGCGCACATGATGTG
* * * *
19115333 TGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCCAGAACTCAC
66 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19115398 ACCCCCTTAAAGAGCATTT-ACGATTTTATAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAA
131 ACCCCCTTAAAGAGCATTTGA-GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
19115462 TGGGG-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
195 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
19115526 GTGCATGCCAACAAAAATACAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAA
260 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * * * * * *
19115591 AATTTTAAAAATTCCCGAACCGCAAAAAGTTTTAACATTCGTGAAAAATAGAAAACAAGTCGTCT
325 AATTTAAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCATGAAAAACAGAAAACAAGTCGTCT
19115656 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
390 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
19115721 ATTGGCATGCAGAAATATGAAGATGCGCCTAAACCCACCAACCACCCT-ATCGATTCACGACTTG
455 ATTGGCACACAGAAATATGAACATGCGCCTAAACCCACCAACCACCCTAATCGA-TCACGACTTG
* * * *
19115785 -CGCATCTCGTCTCTCTAGTCGGCGTAGT-AC-CCG-C-C-CGCCCGC-TCGTTTCGTCAGTTGC
519 TCGCA-CCCATCTCTC-AGCCGACGTAGTCACGCCGCCGCACGCCCGCTTC-TTT-GTCAGTTGC
* * * **
19115843 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACAGGACTGAGGGTTGTGGCAGTAGGAT
580 CTTAGGCATACAGAGTTCATT-CCA-TCTAAGA-T--ACAGG-C-CA-AG-ACT-G-AG--GGAT
* * *
19115908 CGACAAAACGCAAAGAGGGACCCAACCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCAGCTG
632 CGACAAAACG--AAGAGGGAACCAACC-A-CCC-CGC-TGCG-----CACCCC-AT----AGC-G
* *** * * *
19115973 AGTGCCCGC-ACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGATC
680 -GT--ACGCTAC-CTAAATTCGCGGG-T-A-TTA-GCATACGAAGTTCATTCCCAGTCTAAGATC
* * **
19116037 GGACC-AAACCA-A-G-GGCTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATGT
737 GGACCGAAACCAGACGAGGCTGCGGCAGCACATCCTAGGCTCGGGCATGTGCT-GTGCCACATGT
* *
19116098 TTCTTCATCGGGGCACCACCGCCGAAGCATCGCTGGAGA
801 TTCTTCATCGGGGCACCACCGCCGAAGCATCACTAGAGA
* * *
19116137 ACTTGACCGACGGCATTGGGGTT-CTAGCGATCGGGGGGGCCGGGGGGGTTTACGCACATGATGT
1 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTTTGCGCACATGATGT
19116201 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
65 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
19116266 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
130 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
19116331 TGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
195 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
19116396 GTGCATGCCAA-AAAAAGTACAAGGATAACATCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
260 GTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAA
* * * ** **
19116460 AAAATTAAAAAAAATCCAGAATCGTAAAAAGTTTCAAAAATCATGAAATGCAGAAAAGGAGTCGT
323 AAAATTTAAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCATGAAAAACAGAAAACAAGTCGT
*
19116525 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATG
388 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
19116590 GCATTGGCACATAGAAATATGAACAT-TGCCTAAACCCA-CTACCACCCTAATCGATCCCGGCTT
453 GCATTGGCACACAGAAATATGAACATGCGCCTAAACCCACCAACCACCCTAATCGATCACGACTT
* * * *
19116653 GTCGCACCCATCTCTCGGCCGACGTAGTGCACGCCGCCGCACGTCCGCTTCTTTGTCGGTTGGCT
518 GTCGCACCCATCTCTCAGCCGACGTAGT-CACGCCGCCGCACGCCCGCTTCTTTGTCAGTTGCCT
* * ** * *
19116718 TAGGCATACAGAGTTCATTCCATCTAAGATCCAGGCCAAGACTGAGGGATCGGCAGCACGATGGG
582 TAGGCATACAGAGTTCATTCCATCTAAGATACAGGCCAAGACTGAGGGATCGACAAAACGAAGAG
** * *
19116783 GGAACCTGCCACCCCGCTGCGCGCCCCATAGCGGTACGCTACGTAAATTCGCGGGTATTAGCATA
647 GGAACCAACCACCCCGCTGCGCACCCCATAGCGGTACGCTACCTAAATTCGCGGGTATTAGCATA
* * * * *
19116848 CGAAGTTTATTCCCAGTCTAAGATCGGACCTGAAACGAGGATCGATGGTTGTGGTAGCACATCCT
712 CGAAGTTCATTCCCAGTCTAAGATCGGACC-GAAACCA-GA-CGA-GGCTGCGGCAGCACATCCT
* * * * *
19116913 AGGCTCGGGCATGTGCTGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACTAGA
773 AGGCTCGGGCATGTGCTGTGCCACATGTTTCTTCATCGGGGCACCACCGCCGAAGCATCACTAGA
19116978 GA
838 GA
* * *
19116980 ACCTGACTGACGGCATCGGGGTTCCGACGATTGGGGGGGCC-GGGGGGTTTGCGCACATGATGTG
1 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTTTGCGCACATGATGTG
* * *
19117044 CGATTGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCCAACCTCGAGAACTCAC
66 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19117109 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
131 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* **
19117174 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTGCTG
196 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19117239 TGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTGCTTCCGAAAAA
261 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* *
19117304 ATTT-TAAAAATCCCGAACC
326 ATTTAAAAAAATCCAGAACC
19117323 ATTGTATGAG
Statistics
Matches: 1044, Mismatches: 117, Indels: 79
0.84 0.09 0.06
Matches are distributed among these distances:
836 32 0.03
837 3 0.00
838 6 0.01
839 1 0.00
840 24 0.02
841 10 0.01
842 260 0.25
843 80 0.08
844 36 0.03
848 1 0.00
849 5 0.00
854 4 0.00
855 2 0.00
856 3 0.00
857 1 0.00
858 10 0.01
860 11 0.01
862 2 0.00
863 1 0.00
864 1 0.00
865 1 0.00
866 1 0.00
867 1 0.00
868 15 0.01
869 212 0.20
870 130 0.12
871 148 0.14
872 4 0.00
873 28 0.03
874 9 0.01
875 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (839 bp):
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTTTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
ATTTAAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCATGAAAAACAGAAAACAAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACACAGAAATATGAACATGCGCCTAAACCCACCAACCACCCTAATCGATCACGACTTGTC
GCACCCATCTCTCAGCCGACGTAGTCACGCCGCCGCACGCCCGCTTCTTTGTCAGTTGCCTTAGG
CATACAGAGTTCATTCCATCTAAGATACAGGCCAAGACTGAGGGATCGACAAAACGAAGAGGGAA
CCAACCACCCCGCTGCGCACCCCATAGCGGTACGCTACCTAAATTCGCGGGTATTAGCATACGAA
GTTCATTCCCAGTCTAAGATCGGACCGAAACCAGACGAGGCTGCGGCAGCACATCCTAGGCTCGG
GCATGTGCTGTGCCACATGTTTCTTCATCGGGGCACCACCGCCGAAGCATCACTAGAGA
Found at i:19117674 original size:26 final size:26
Alignment explanation
Indices: 19117644--19117696 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19117634 GTTGACTTAG
**
19117644 GCATACGGAGTTCATTTTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19117670 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19117696 G
1 G
19117697 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19118576 original size:26 final size:26
Alignment explanation
Indices: 19118545--19118595 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19118535 TTGACTTAGG
19118545 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
*
19118571 CATACGGAGTTCATTCCTAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
19118596 GATCGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:19119459 original size:899 final size:894
Alignment explanation
Indices: 19117320--19120352 Score: 4117
Period size: 900 Copynumber: 3.4 Consensus size: 894
19117310 AAAATCCCGA
*
19117320 ACCATTGTATG-AGTTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCT
1 ACCATTGTATGAAG-TTACAAGCCATAAAAATGGCATTGGCACTTAGAAATATGAAGATGTGCCT
* *
19117384 AAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
65 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCC
* *
19117449 CGCCCGCCCGCCCGCTCATTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
130 CGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * *
19117514 CGGATCAGATCGAAGGTTGC-AGCAGCAAGATTGACCGCACACAGAGGGGGACCCGACTGATCCT
195 CGGACCGGACCGAAGGTTGCGA-CAGCAGGATCGACAGCACGCAGAGGGGGACCCGACTGATCCC
* * * * * *
19117578 CGGCTTGTGCATCTCGCCTCTCTGGCCGGTTGAGCGCCCACACGCTCATTTCATGGGTTGACTTA
259 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
** *
19117643 GGCATACGGAGTTCATTTTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTAG
324 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-
** * * *
19117707 ACCGAAGGTTGTGGCAGCACATGTTGGACTCGGGCATGT-TCTGGTGCCGTATTTTTCTTCGTCG
388 ACCGAAGGTTACGGCAGCACATGCTGGGCTCGGGCATATGT-TGGTGCCGTATTTTTCTTCGTCG
* * * * **
19117771 GGGCACCATCGCCGAAGCATCG-TCAGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGG
452 GGGCACCATCGCCGGAGCATCGCTCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGG
* *
19117835 GGAGCCGAGCAGGGGT-TGCGCACATGATGTGCAATGGGTGATGGTACTTGGCCCTTATATTGGC
517 GG-GCCG-G-GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * * *
19117899 CCCATATCCCTCATCAAACCTCGATAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGT
579 CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
19117964 TTGCTGCCAGTAGGCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTT
644 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* ** *
19118029 GTACAATTCGAGTTTTTAATTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCATATCCAC
709 -TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATC--A-GCAC
* * * *
19118094 CAAGTTTGGGGCCAAAACTGCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCTA
770 CAAG-TTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
*
19118159 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
834 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * * *
19118220 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAAAAATATGAAGATGTGCCG
1 ACCATTGTATGAAGTTACAAGCCATAAAAATGGCATTGGCACT-TAGAAATATGAAGATGTGCCT
* * * * ** * *
19118284 ACACCCACCTACCACCATATCGATTCAAGGCTTGCGCATCCCACCTCTCTAGTCGGCGTAGTGCC
65 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCC
* * *
19118349 CGCCTGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
130 CGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
19118414 CTGACCGAACCGAAGGTTGCGGCAGCAGCATCGACAGCACGCAGAGGGGGACCTGA-TCGATCCC
195 CGGACCGGACCGAAGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGACT-GATCCC
* * * * * *
19118478 CAGCTTGTGCATCCCGCCCCTCTGGCCGGTTGAGTGCCCGTACGCTCGTTTCATTGGTTGACTTA
259 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
* *
19118543 GGCATACGGAGTTCATTCCCAGTCTAACCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGAA
324 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAA
* * * *
19118608 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATATGTTGGTGCAGCATTTTTCTTCATC-GG
389 CCGAAGGTTACGGCAGCACATGCTGGGCTCGGGCATATGTTGGTGCCGTATTTTTCTTCGTCGGG
* * *
19118672 GCACCGTCGCCGGAGCATCGCT-GGAGAACCTGACTGGCGAAATTGGGGTTCCGACGATCGGGGG
454 GCACCATCGCCGGAGCATCGCTCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGG
** * *
19118736 GCCGGGGGGGAGTGTGCGCACATGATGTGTGATGGTTGCTAGTACTTGGCCCTTATATTGGCCCC
519 GCC-GGGGGG-GTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
19118801 CTATCCCTCATCAAACCTTGAGAAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTT
582 CTATCCCTCATCAAACCTTGAG-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
19118866 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTC
646 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTT-
* *
19118931 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCGAAAAAAATACAAGGATCA-CATCTA-
710 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATACAAGGATCAGCACCAAG
* * *
19118994 TTGGGGCCAAAAAACCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAACTTTCAAAAATC
774 TTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
*
19119059 ATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGG
839 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
19119115 ACCATTGTATGAAGTTACAAGCCATAAAAATGGCATTGGCACTTAGAAATATAAAAAAGTGCCTA
1 ACCATTGTATGAAGTTACAAGCCATAAAAATGGCATTGGCACTTAGAAATATGAAGATGTGCCTA
* * * *
19119180 AACCCACCTACTACCCTATCGATCCACGGCTTGCGCATCCCGTATCTTTGGCCGACGTAGTGCCC
66 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTG--C
* *
19119245 GCTCGCCCGCCTGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAA
129 -C-CGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** *
19119310 GATCGGATCGGACCGAGGGTTACGACAGTAGGATCGACAGCACGCAGAGGAAGACCCGGCTGATC
192 GATCGGACCGGACCGAAGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGACTGATC
* * * *
19119375 CCCGGCTTGCGCATCCCGTCTCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
257 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* * * *
19119440 TAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAAATTGGACCG
322 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * *
19119505 AACTGAAGGTTACGACAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCGTATTTTTCTTCGTCG
387 AACCGAAGGTTACGGCAGCACATGCTGGGCTCGGGCATATGTTGGTGCCGTATTTTTCTTCGTCG
* * **
19119570 GGGCACCATCGTCAGAGCATC-CTCGGAGAACCTGACCGGCGACATTGGGGTTTTGACGATCGGG
452 GGGCACCATCGCCGGAGCATCGCTCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATC-GG
*
19119634 GGGGCC--GGGGG-GTGCGCACAAGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
516 GGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
19119696 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAATAGTATTTGAGATTTTACAGGTTT
581 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
19119761 GCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
646 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT-CTTT
* *
19119826 ACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATAAAAGGATCAGGTCTACC
710 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCA-G-C-ACC
* * * *
19119891 AAGTTTTGGGCCAAAAATCCATCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAA
771 AAG-TTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
* * * *
19119956 AATCATGAAAAATAAAAAACGAGTTGTCTTGCCCTGAAACTTCACGTAAAGGCTTAAGGG
835 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
19120016 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACATAGAAATATGAAGATGTGCCTA
1 ACCATTGTATGAAGTTACAAGCCATAAAAATGGCATTGGCACTTAGAAATATGAAGATGTGCCTA
*
19120081 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCC
66 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCC
** * *
19120146 GCCCGCCCGCCCGCTATTTTTGTC-AGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAG
131 GCCCGCCCGCCCGCTCGTTTCGTCGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * ** * *
19120210 CAGACCGGGCCGAGGGTTGCGGTAGCAGGATCAACAGCA--CAGAGAGGGGACCCGACCGATCCC
195 CGGACCGGACCGAAGGTTGCGACAGCAGGATCGACAGCACGCAGAG-GGGGACCCGACTGATCCC
* * * * ** * *
19120273 CGCCTTACGCATCCCGCCCCTTTGGCCGGCTAAAAGCCCGCACGCTC-ATTCGGTGGGTTGACTT
259 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC-ATGGGTTGACTT
*
19120337 AGGCATACGGACTTCA
323 AGGCATACGGAGTTCA
19120353 CGTGAACCTG
Statistics
Matches: 1874, Mismatches: 226, Indels: 70
0.86 0.10 0.03
Matches are distributed among these distances:
894 2 0.00
895 376 0.20
896 152 0.08
897 97 0.05
898 13 0.01
899 408 0.22
900 572 0.31
901 254 0.14
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
ACCATTGTATGAAGTTACAAGCCATAAAAATGGCATTGGCACTTAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCC
GCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
GGACCGGACCGAAGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGACTGATCCCCG
GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACC
GAAGGTTACGGCAGCACATGCTGGGCTCGGGCATATGTTGGTGCCGTATTTTTCTTCGTCGGGGC
ACCATCGCCGGAGCATCGCTCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGC
CGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCAGCACCAAGTTGGGGC
CAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
Found at i:19119479 original size:26 final size:26
Alignment explanation
Indices: 19119443--19119494 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
19119433 GTTGACTTAG
19119443 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19119469 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19119495 AATTGGACCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19121142 original size:26 final size:26
Alignment explanation
Indices: 19121105--19121157 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19121095 GTTGACTTAG
*
19121105 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
19121131 GCATACAAAGTTCATTCTCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
19121157 G
1 G
19121158 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:19121641 original size:27 final size:27
Alignment explanation
Indices: 19121583--19121641 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
19121573 ACTACTTTCG
**
19121583 AAAAAATTTTAAAAAATCCCGAACCAT
1 AAAAAATTTTAAAAAATCCCGAAAAAT
**
19121610 AAAAAATTTT-AAAAATCGTGAAAAAT
1 AAAAAATTTTAAAAAATCCCGAAAAAT
*
19121636 AGAAAA
1 AAAAAA
19121642 CGAGTTGTCT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 17 0.63
27 10 0.37
ACGTcount: A:0.61, C:0.10, G:0.07, T:0.22
Consensus pattern (27 bp):
AAAAAATTTTAAAAAATCCCGAAAAAT
Found at i:19122035 original size:26 final size:26
Alignment explanation
Indices: 19122006--19122058 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19121996 GTTGACTTAG
*
19122006 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
19122032 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19122058 G
1 G
19122059 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19122451 original size:898 final size:895
Alignment explanation
Indices: 19120356--19122785 Score: 3415
Period size: 906 Copynumber: 2.7 Consensus size: 895
19120346 GACTTCACGT
* * *
19120356 GAACCTGATCGACGGTATTGGGGTTTCGATGATCGGGGGGGTCGAGGGGGTGTGCGCACATGATG
1 GAACCTGATCGACGGCATTGGGGTTTCGACGATCGGGGGGG-CCAGGGGGTGTGCGCACATGATG
* *
19120421 TGTGTTGGGTGCTAT-TACTT-GCCCTTATATTGGCCCCCTATCTCTCATCAAATCTCGAGAACT
65 TGTGATGGGTGCT-TGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCGAGAACT
* *
19120484 CGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
128 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
19120549 AATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGCTTTTAGCTAAATTTTT
193 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTT
* * *
19120614 TTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAACTCCTTTCAAA
258 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * *
19120679 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGT
323 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
19120744 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCGATAAAAATG
388 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
19120809 GCATTGGCACGTAAAAATATAAAGACGTGCCTAAACCCACCTACCAGCCTATCGATCCACAACTT
453 GCATTGGCA-GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTT
* ** * * *
19120874 ACGTATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCGACCCACCCGCCCGCCCGTTTCATCGGTT
516 GCACATCCCGTCTCTCTGGCCG-CGTAGTG-CCG--G-CCCGCCCGCCCGCTCGTTTCGTCGGTT
* * ** * * * *
19120939 GGCTTAGGCATGCAGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCAGCAGCAAG
576 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGCTACAGCAGCAAG
** * * * *
19121004 GTGGGTAGCACGCAAAGGGGGACCCGATCGATCCTCGGCTTACGTATCCCGCCCCTCTGGCTGTC
641 GTGGCCAGCACGCAAAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGC
* * * *
19121069 TGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCA
706 TGAGAGCCCGCACGCTCGTTTCATGAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCA
* * * * *
19121134 TACAAAGTTCATTCTCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGCACATGCTGGGCTC
771 TACAAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTACGACAGCAAATGATAGGCTC
* * * *
19121199 AGGGATGTGCTGGTGTCATATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGA
836 AGGGATGTGCCGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGA
*
19121259 GAACCTGATCGACGGCATTGGGGTTTC-AGCGATCGGGGGGGCCGAGTGGGGGTGTGAGCACATG
1 GAACCTGATCGACGGCATTGGGGTTTCGA-CGATCGGGGGGGCC-A--GGGGGTGTGCGCACATG
* * *
19121323 ATGTGTGATTGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
62 ATGTGTGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCGAGAA
19121388 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
126 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
19121453 GAAATGGAGAGACTTTTTTCAAATGGTCACAAAATATTGTACACTGT-GAGTTTTTCA-CTAAAT
191 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTT-AGCTAAAT
* *
19121516 TGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTT
254 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT
* *
19121581 CGAAAAAATTTTAAAAAATCCCGAACCATAAAAAATTTTAAAAATCGTGAAAAATAGAAAACGAG
319 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAG
*
19121646 TTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
384 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
19121711 AATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
449 AATGGCATTGGCA-GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-
* * * *
19121776 GCTTGCACATACCGTCTCTCAGGCCAGTGTAGTGCCGGCCCGCCCGCCCGCTCTTTTCGTCGGTT
512 GCTTGCACATCCCGTCTCTCTGGCC-GCGTAGTGCCGGCCCGCCCGCCCGCTCGTTTCGTCGGTT
*
19121841 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGCTACAGCAGC-AG
576 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGCTACAGCAGCAAG
* * * * *
19121905 GTTTGCCAGCACGTAGAGGGGGACCCGATCGATCCCCGGGTTACGCATCCCG-CCCTTTGGCCGG
641 G-TGGCCAGCACGCAAAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGG
* *
19121969 CTGTGAGCCCGCACGCTCGTTTCATGAGTTGACTTAGGCATAC-GAAGTTTATTCCCAGTCTAAG
705 CTGAGAGCCCGCACGCTCGTTTCATGAGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAG
** * *
19122033 CATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAAGGTTGCGGCAGCAAATGATAGG
769 CATACAAAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAAGGTTACGACAGCAAATGATAGG
* **
19122097 CTC-GGGCATGTGCCGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGA
833 CTCAGGG-ATGTGCCGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGA
* * **
19122160 GAACCTGACCGACGGCATTGGGGTTCCGACGATCCAGGGGGCCAGGGGGTGTGCGCACATGATGT
1 GAACCTGATCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGT
* *
19122225 GTGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACATTGAGAACTCA
66 GTGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC-TCGAGAACTCA
* * * * *
19122290 CACCCCCTTAAAGAGCATATGAGATTTTACAGGTTTGCTGTCGGTAGCCAGTAAAGTGTCCGAAA
130 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19122355 TGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTAATTTTTTTT
195 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
** * * * *
19122420 GTGCACACCAAGAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCCGAACA
260 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * * * * *
19122485 TATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGGAAAATAGAAAACGAGTCATCT
325 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
19122550 TGCCATCAAACTTCATGTCAAGGCTTAAGGGACCATTGTATTGAATTTACAAGCCAT-AAAATGG
390 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA-TGAATTTACAAGCCATAAAAATGG
*
19122614 CAATGTGGACAGTAGAAATATGAAGAGTGTGGCCTAAACCCACCTACCACCCATATCGATCTACG
454 C-AT-TGG-CAGTAGAAATATGAAGA-TGT-GCCTAAACCCACCTACCACCC-TATCGATCCACG
* *
19122679 CTTGCACATCCCGTCTATCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
513 CTTGCACATCCCGTCTCTCTGGCC-GCGTAGTGCCGGCCCGCCCGCCCGCTCGTTTCGTCGGTT-
*
19122744 GGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGGACC
576 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
19122786 GGACAGAGGG
Statistics
Matches: 1363, Mismatches: 139, Indels: 50
0.88 0.09 0.03
Matches are distributed among these distances:
897 3 0.00
898 352 0.26
899 18 0.01
900 24 0.02
901 215 0.16
902 200 0.15
903 89 0.07
905 37 0.03
906 422 0.31
907 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GAACCTGATCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGT
GTGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCAGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCTTGCACA
TCCCGTCTCTCTGGCCGCGTAGTGCCGGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGCTACAGCAGCAAGGTGGCCAGCA
CGCAAAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGAGCCCG
CACGCTCGTTTCATGAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAAAGTTC
ATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTACGACAGCAAATGATAGGCTCAGGGATGTGC
CGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGA
Found at i:19123442 original size:719 final size:718
Alignment explanation
Indices: 19122032--19123498 Score: 2148
Period size: 719 Copynumber: 2.0 Consensus size: 718
19122022 CCCAGTCTAA
* * *
19122032 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAAGGTTGCGGCAGCAAATGATAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAAGGTTGCAGCAGCAAATGATAGG
* *
19122097 CTCGGGCATGTGCCGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCCGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
19122162 ACCTGACCGACGGCATTGGGGTTCCGACGATCCAGGGGGCCAGGGGGTGTGCGCACATGATGTGT
131 ACCTAACCAACGGCATTAGGGTTCCGACGATCCAGGGGGCCAGGGGGTGTGCGCACATGATGTGT
* *
19122227 GATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACATTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACATCGAGAACTCACA
** * *
19122292 CCCCCTTAAAGAGCATATGAGATTTTACAGGTTTGCTGTCGGTAGCCAGTAAAGTGTCCGAAATG
261 CCCCCTTAAAGAGCATATGAGATTTTACAGGTTTGCTACCAGTAGCAAGTAAAGTGTCCGAAATG
* * *
19122357 GGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTAATTTTTTTTGT
326 GGGACACTTTTTTCAAATGATCACAAAATCTTGTACACCTCGAGTTTTTAGATAATTGTTTTTGT
* * * * *
19122422 GCACACCAAGAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCCGAACATA
391 GCACACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCCGAAAAAA
*
19122487 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGGAAAATAGAAAACGAGTCATCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGGAAAATAGAAAACGAGTCATCTTG
*
19122552 CCATCAAACTTCATGTCAAGGCTTAAGGGACCATTGTATTGAATTTACAAGCCATAAAATGGCAA
521 CCATCAAACTTCATGTCAAGGCTTAAGGGACCATCGTATTGAATTTACAAGCCATAAAATGGCAA
*
19122617 TGTGGACAGTAGAAATATGAAGAGTGTGGCCTAAACCCACCTACCACCCATATCGATCTACGCTT
586 TGTGGACAGCAGAAATATGAAGAGTGTGGCCTAAACCCACCTACCACCCATATCGATCTACGCTT
* * *
19122682 GCACATCCCGTCTATCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGGC
651 GCACATCCCATCTATCTGGCCGACGTAGTGCCCGACCGCCCGCCCGCTCGTTTCGTCGGTT-GGC
19122747 TTAG
715 TTAG
* * * * *
19122751 GCATACGGAGTTCATTCCAAGTCTAAGATCGGACCGGACAGAGGGTTGCAGCAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAAGGTTGCAGCAGCAAATGATAGG
* * * ** *
19122816 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCCGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
19122881 ACCTAACCAACGGCATTAGGGTTTCGACGAT-CGGGGGGCCGTAGGGGGT-TGCGCACATGGATG
131 ACCTAACCAACGGCATTAGGGTTCCGACGATCCAGGGGGCC--AGGGGGTGTGCGCACAT-GATG
* * *
19122944 TGTGATGGG-GCTGGTACTTGGCCCTTAATATTGGCCCTCTAT-CCTCATCAAACCTCGAGAACT
193 TGTGATGGGTGCTGGTACTTGGCCCTT-ATATTGGCCCCCTATCCCTAATCAAACATCGAGAACT
* * * *
19123007 CACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATATGAGATTTTACAGGTTTGCTACCAGTAGCAAGTAAAGTGTCCGA
* * *
19123072 AATGGGGACACTTTTTTCAAATGGTCACAAGATCTTGTACACCTCGATTTTTTAGATGAA-TGTT
322 AATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACCTCGAGTTTTTAGAT-AATTGTT
** * *
19123136 TTTGTGCATGCCAACAAAAATACATGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTCCCGA
386 TTTGTGCACACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCCGA
* * *
19123201 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGGAAAATAGAAAACGAGTCG
451 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGGAAAATAGAAAACGAGTCA
* *
19123266 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATCGTA-TGAATTTACAAGCCATAAAAA
516 TCTTGCCATCAAACTTCATGTCAAGGCTTAAGGGACCATCGTATTGAATTTACAAGCCAT-AAAA
19123330 TGGC-AT-TGGCACA-CAGAAATATGAAGA-TGT-GCCTAAACCCACCTACCACCC-TATCGATC
580 TGGCAATGTGG-ACAGCAGAAATATGAAGAGTGTGGCCTAAACCCACCTACCACCCATATCGATC
** * *
19123389 TACGGCTTGCGTATCCCATCTCTCTGGCCGACGTAGTGCTCGCCCGACCGCCCGCCCGCTTGTTT
644 TAC-GCTTGCACATCCCATCTATCTGGCCGACGTA--G-T-GCCCGACCGCCCGCCCGCTCGTTT
19123454 CGTCGGTTGGCTTAG
704 CGTCGGTTGGCTTAG
*
19123469 GCATACAGAGTTCATTCCCAGTCTAAGATC
1 GCATACGGAGTTCATTCCCAGTCTAAGATC
19123499 AGAACAGACC
Statistics
Matches: 670, Mismatches: 66, Indels: 25
0.88 0.09 0.03
Matches are distributed among these distances:
714 11 0.02
715 47 0.07
716 3 0.00
717 17 0.03
718 65 0.10
719 491 0.73
720 36 0.05
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (718 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAAGGTTGCAGCAGCAAATGATAGG
CTCGGGCATGTGCCGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTAACCAACGGCATTAGGGTTCCGACGATCCAGGGGGCCAGGGGGTGTGCGCACATGATGTGT
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACATCGAGAACTCACA
CCCCCTTAAAGAGCATATGAGATTTTACAGGTTTGCTACCAGTAGCAAGTAAAGTGTCCGAAATG
GGGACACTTTTTTCAAATGATCACAAAATCTTGTACACCTCGAGTTTTTAGATAATTGTTTTTGT
GCACACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGGAAAATAGAAAACGAGTCATCTTG
CCATCAAACTTCATGTCAAGGCTTAAGGGACCATCGTATTGAATTTACAAGCCATAAAATGGCAA
TGTGGACAGCAGAAATATGAAGAGTGTGGCCTAAACCCACCTACCACCCATATCGATCTACGCTT
GCACATCCCATCTATCTGGCCGACGTAGTGCCCGACCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
TAG
Found at i:19125465 original size:729 final size:721
Alignment explanation
Indices: 19123604--19126556 Score: 4188
Period size: 710 Copynumber: 4.1 Consensus size: 721
19123594 AGTGCCCGCA
* * * *
19123604 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTACCAGTCTAAGATTGGACCGGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCCGTCTAAGATCGGACCGGACCG
* * *
19123669 AGGGTTGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTC-ATCGATGG
65 AGGGTTGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTAGA-GG
* * * ** ** *
19123733 -ACCGTCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGTGTTGGGGTTCCAGCGATCGAGAGGG
129 CACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCG-GGGGG
* *
19123797 CCGGGGGGGTGTGCTCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTA
193 TCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
19123861 TCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
258 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
19123926 CCAGTAGCTATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
323 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
19123991 TTTGAGTTTTTAGCTG-ATATTTTTTGTGCATGCCAAAAAAAATACATGGATCATGTCTACCAAG
388 TTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* * * * *
19124055 TTT-GGAGCCAAAATTCCTTCCGAAAAAATTTTAAAAAATCTCGAACGGCAAAAAGTTTCGAAAA
452 TTTGGGA-CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
* *
19124119 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAACCTTCACGTGAAGGCTTAGGGGACCATTG
516 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
19124184 TATGAATTTACAAGCCATAAAAATGGCATTGGCAAGTAGAAATATGAAGATGTGCCTAAACCCAC
581 TATGAATTTACAAGCCATAAAAATGGCATTGGCCA-TAGAAATATGAAGATGTGCCTAAACCCAC
*
19124249 CTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGT--------GCC
645 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCAGCCCGCC
19124306 CG--C-C-CGCC
710 CGCCCGCTCGCC
* * *
19124314 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCATTGTAAGATCGGACCGGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-GTCTAAGATCGGACCGGACCG
* * *
19124379 AGGGTTGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCG-TTGCGGC
65 AGGGTTGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTAGAGGC
* **
19124443 ACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCCAGAAATCGGGGGGTC
130 ACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGTC
* * * *
19124508 GGGGGGGTGTGCACAAATGATGTGTGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATC
195 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
19124573 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCC
260 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
19124638 AGTAGCCATTAAAGTGTTTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
325 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
19124703 CGAGTTTGTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
390 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
** * *
19124767 GGGACCAAAACTCCTTCCAAAAAAATTAAAAAAAAATCCCGAACCGCAAGAGGTTTCAAAAATCA
455 GGGACCAAAACTCCTTCCAAAAAAATT-TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* *
19124832 TGAAAAATAGAAAACGAGTCGTCTTACAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
519 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
19124897 GAATTTTTTAAAAGCCATAAAAATGGCATTGGCGCATAGAAATATGAAGATGTGCCTAAACCCAC
584 GAA---TTTACAAGCCATAAAAATGGCATTGGC-CATAGAAATATGAAGATGTGCCTAAACCCAC
* * *
19124962 CTACCACCCTATCGATCCATGGCTTACGCATCCCGTCTCTCTGGCCGACATAGTGCCCACTCGCC
645 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CCA---GCC
19125027 CGCCCGCCCGCTCGCC
706 CGCCCGCCCGCTCGCC
* * * *
19125043 CGCTCGTTTCATCGGTTGGCTTAGCCATACGGAGTTCATTCCCGCTCTAAGATCGGACTGAACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCG-TCTAAGATCGGACCGGACCG
** * * *
19125108 AGGGTTGCGGTGGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTTGCTAG-GGC
65 AGGGTTGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTAGAGGC
* *
19125172 ACCATCGCCGGAGCATCACCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGCGATCGGGGGG-C
130 ACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGTC
* * *
19125236 -GGGGTGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTTTT
195 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC-TAT
19125300 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
259 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
19125365 CAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCT
324 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
19125430 TCGAGCTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
389 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * * *
19125495 TGGGGCCAAAACTCCTTCCAAAAAAATTTCAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCG
454 TGGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* *
19125560 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTAT
519 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
19125625 GAATTTACAAGCCATAAAAATGGCATT-CCCATGCAGAAATATGAAGATGTGCCTAAACCCAACT
584 GAATTTACAAGCCATAAAAATGGCATTGGCCAT--AGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
19125689 ACCACCCTATCGATCCACTGCTTGCGCATCACGTCTCTCTAGCCGACGTAGTGCCCA-CCCGCCT
647 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CCAGCCCGCCC
*
19125753 GCCCG-T---T
711 GCCCGCTCGCC
* * * *
19125760 CGCTTGTTACGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-GTCTAAGATCGGACCGGACCG
* * * * * *
19125825 AGGGTTGCGGGAGCACATACTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACT-GAGGC
65 AGGGTTGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTAGAGGC
* * *
19125889 ACCATCGTCGGAGCATCGCCGGAGAACCTAACCGGCGGCATTGGGGTTCC-GACGATCGGGGGGG
130 ACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAG-CGATC-GGGGGG
* *
19125953 TCGGAGGGGGTGTGCGCACATGATGTGCGATGGGTTCTGGTGCTTGGCCCTTATATTGGCCCCCT
193 TCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
19126018 ATCCCTCATCAAACCAT-GAGAACTCATACCCCCTTAAAGAGCATTCGAGATTTTGCAGGTTTGC
257 ATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
19126082 TGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
321 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
19126147 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGTATGCCAAAAAAAATACAAGGATCACGTCTACCAT
386 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * * *
19126212 GTTTGGGGCCAAAACTACTTCTAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCCAAAA
451 GTTTGGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
* * * * *
19126277 TCGTGAAAAATAGAAAAAGGAGCCGTTTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATT
516 TCATGAAAAATAG-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
19126342 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCA
580 GTATGAATTTACAAGCCATAAAAATGGCATTGGC-CATAGAAATATGAAGATGTGCCTAAACCCA
* * * * **
19126407 CCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGGCGTAGGGCGTGCCCGC
644 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCAGCCCGC
*
19126472 CCGCCCGCCCGCC
709 CCGCCCGCTCGCC
* ** * *
19126485 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGCTCATTGCTAGTCTAAGATCAGATC-GAGCC
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCCGTCTAAGATCGGACCGGA-CC
19126549 GAGGGTTG
64 GAGGGTTG
19126557 TGGTAGCAAG
Statistics
Matches: 2011, Mismatches: 181, Indels: 87
0.88 0.08 0.04
Matches are distributed among these distances:
709 127 0.06
710 400 0.20
711 1 0.00
713 105 0.05
714 1 0.00
716 2 0.00
717 162 0.08
718 7 0.00
719 1 0.00
720 257 0.13
721 230 0.11
722 1 0.00
723 5 0.00
724 3 0.00
725 166 0.08
726 1 0.00
727 55 0.03
728 238 0.12
729 247 0.12
730 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (721 bp):
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCGTCTAAGATCGGACCGGACCGA
GGGTTGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTAGAGGCA
CCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGTCG
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
GGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCCATAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCAGCCCGCCCGCCCG
CTCGCC
Found at i:19128028 original size:880 final size:878
Alignment explanation
Indices: 19125869--19128829 Score: 3726
Period size: 898 Copynumber: 3.3 Consensus size: 878
19125859 TGCTGGTGCT
* *
19125869 GCATTTTTCTTCACTGAGGCACCATCGTCGGAGCATCGCCGGAGAACCTAACCGGCGGCATTGGG
1 GCATTTTTCTTCACTGAGGCACCATCGCCGGAGCATCGTCGGAGAACCTAACCGGCGGCATTGGG
* * *
19125934 GTTCCGACGATCGGGGGGGTCGGAGG-GGGTGTGCGCACATGATGTGCGATGGGTTCTGGTGCTT
66 GTTCCGACGATCGGGGGGG-CCGAGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
19125998 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCA-TGAGAACTCATACCCCCTTAAAGAGCAT
130 GGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CATTGAGAACTCACACCCCCTTAAAGAGCAT
* * *
19126062 TCGAGATTTTGCAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
194 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
19126127 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGTATGCCAAAAAAAAT
259 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAAT
* * **
19126192 ACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTACTTCTAAAAAAATTTTAAAAAATCCCGA
324 ACAAGGATCACGTCTACCATGTTTGGGGTCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* ** * *
19126257 ACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAA-AGGAGCCGTTTTGCCATGAAACTTCAC
389 ACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACA--AGTCGTCTTGCCATGAAACTTCAC
* *
19126321 GTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
452 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-AAAAATGGCATTGGCACATAGAAAT
* * * *
19126386 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTG
516 ATGAAGATATGGCTAAACCCGCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
*
19126451 GTCGGCGTAGGGCGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
581 G-C--C----GGCGTG---G--TGCCCGCCCG--CG-TCGTTTCGTCGGTTGGCTTAGGCATACG
* * * ** * *
19126516 GAGCTCATTGCTAGTCTAAGATCAGA-TCGAGCCGAGGGTTGTGGTAGCAAGATCGACAGCACGC
631 GAGTTCATTCCTAGTCTAAGATCAGACTCGA-CTGAGGGTTGTGACAGCAGGATCGGCAGCACGC
* *
19126580 AAAGGAGGACCCGACCGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCACCCGCAC
695 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* * *
19126644 GCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
760 GCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATT
** * * * * *
19126709 CCCAGTGAAAGATCGGACCGGATCGAGGGTTTCAGCAGCACATACTGGGCTCGG
825 CCCAGTCTAAGATCGGACCGGACCGAGGGTTACAGGAGCACATATTGGGTTCGG
* * ***** * * * *
19126763 GCA-TGTGCTGGTGC-C-GTATTTTTCTTCACCGGTGCACCATCGTCGGAGAACCTGACCGGCGG
1 GCATTTTTCT--T-CACTG-AGGCACCATCGCC-G-G-AGCATCGTCGGAGAACCTAACCGGCGG
* *
19126825 CATTGGGGTTCCGACAATCGGGGGGGCCGGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTG
59 CATTGGGGTTCCGACGATCGGGGGGGCCGAGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
19126890 GTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTTAGAACTCACACCCCCTTAAAG
124 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATTGAGAACTCACACCCCCTTAAAG
19126955 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
189 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
19127020 TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTACATGCCAACA
254 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACA
*
19127085 AAAATACAAGGATCACATCTACCATGTTTGGGGTCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
319 AAAATACAAGGATCACGTCTACCATGTTTGGGGTCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* *
19127150 CCCGAACTGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAGTT
384 CCCGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTT
19127215 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAATGGCATTGGCACATAGAA
449 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAATGGCATTGGCACATAGAA
* * * * *
19127280 ATATGAAGATATGGCTAAACCTGCCTGCCACCCTATCGATCCACGGCTTGCGCAACTCTTCTCTC
514 ATATGAAGATATGGCTAAACCCGCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
19127345 TGGCCGGCGTGGTGCCCGCCCG-GTCATTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCA
579 TGGCCGGCGTGGTGCCCGCCCGCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTA
* * **
19127409 GTCTAAGATCAGACTAGACTGAGGGTTATGACAGCAGGATCGGCAGCACATAGAGGGGGACCCGA
644 GTCTAAGATCAGACTCGACTGAGGGTTGTGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA
* * * * *
19127474 CCGATCCCCGGCTTGCGCATCCCACCCCT-TCGGTCGGCTGAGCGCCCACACGCTCGTTTCGTGG
709 CCGATCCCCGGCTTGCGCATCCCGCCCCTCT-GGCCGGCTGAGCACCCGCACGCTCGTTTTGTGG
* * *
19127538 GTTGACTCAGGCATACGGAGTTCATTCCCAGTTTAAGCATGCGAAGTTCATTCCCAGTCTAAGAT
773 GTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* *
19127603 CAGATCGGACCGAGGGTTACAGGAGCACATATTGGGTTCGG
838 CGGACCGGACCGAGGGTTACAGGAGCACATATTGGGTTCGG
** * * * *
19127644 GCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCG-CTGGAGAACCTAATCGACGGCAATGG
1 GCATTTTTCTTCACTGAGGCACCATCGCCGGAGCATCGTC-GGAGAACCTAACCGGCGGCATTGG
* ** *** *
19127708 GGTTCCGACGATTGAAGGTTTCGAGG-GGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTT
65 GGTTCCGACGATCGGGGGGGCCGAGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*** ** *
19127772 GGTGTTTATATTGGCCCCCTATCTGTCATCAAA-ATTCAAGAACTCACACCCCCTTAAAGAGCAT
130 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACATT-GAGAACTCACACCCCCTTAAAGAGCA-
* * *
19127836 TTTGAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCA
193 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
19127901 AATGGTCACAAAATCTTGGTAGGACTTCGAG-TTTTAGCGTG-CTTTTTTTTTGCATGCCAGCCA
258 AATGGTCACAAAATCTT-GTA-CACTTCGAGTTTTTAGC-TGAATTTTTTTTTGCATGCCA-ACA
*
19127964 AAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCCTTCCGAAAAAATTTTAAAAAA
319 AAAATACAAGGATCACGTCTACCATGTTTGGGGTCAAAACT-CCTTCCGAAAAAATTTTAAAAAA
* * *
19128029 TCCCAAACTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
383 TCCCGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACT
* *
19128094 TCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCATTGGCACATAGA
448 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAATGGCATTGGCACATAGA
**
19128159 AATATGAAGATATGGCTAAACCCGCCTACCACCCTATCGATCCGGGGCTTGCGCATCCCGTCTCT
513 AATATGAAGATATGGCTAAACCCGCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
*** * * *
19128224 CTGGCCAATGTAGTGCCCGACCGCCTGCCCCCTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTT
578 CTGGCCGGCGTGGTGCCCG--C-CC-G---CGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * *
19128289 CATTCCTAGTATAAGATCAGAC-CGAACTGAGGGTTGCGACAGTAGGATCGGCAACACGCAG-GG
636 CATTCCTAGTCTAAGATCAGACTCG-ACTGAGGGTTGTGACAGCAGGATCGGCAGCACGCAGAGG
* ** * * ** * * * *
19128352 GGGACCCGACTGATCTTCGACTTGCGCATCCTGCCCCTCTGGCCAACAGAGCACCTGTATGCTCG
700 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
**
19128417 TTTTACGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAG
765 TTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAG
* * * *
19128482 TCTAAGATTGGACCGGACTGAGGGTTAC-GGCAGCACTTACTGGGCTCAAGCATGTGCTGGTG
830 TCTAAGATCGGACCGGACCGAGGGTTACAGG-AGCACATA-TTGG-----G--T-T-C--G-G
* * * * * * *
19128544 CTGCATTTTTCATCACCGAGGCACCATCACCAGAGCATCGTCGGACAACCTGACCGGCGACATTG
1 --GCATTTTTCTTCACTGAGGCACCATCGCCGGAGCATCGTCGGAGAACCTAACCGGCGGCATTG
* * *
19128609 GGGTTCCGACGATTGGGGCGGCCGACGGGCGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
64 GGGTTCCGACGATCGGGGGGGCCGA--GGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * * *
19128674 GTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGC
127 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATTGAGAACTCACACCCCCTTAAAGAGC
* *
19128739 ATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
192 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
19128804 AAATGGTCACAAAATCTTGTACACTT
257 AAATGGTCACAAAATCTTGTACACTT
19128830 TTTCAAATGG
Statistics
Matches: 1785, Mismatches: 227, Indels: 102
0.84 0.11 0.05
Matches are distributed among these distances:
875 2 0.00
876 90 0.05
877 123 0.07
878 27 0.02
879 52 0.03
880 331 0.19
881 135 0.08
882 5 0.00
883 2 0.00
884 10 0.01
886 3 0.00
887 141 0.08
888 83 0.05
889 6 0.00
893 6 0.00
894 4 0.00
895 9 0.01
896 84 0.05
897 66 0.04
898 358 0.20
899 2 0.00
900 1 0.00
902 71 0.04
903 4 0.00
904 81 0.05
905 88 0.05
906 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (878 bp):
GCATTTTTCTTCACTGAGGCACCATCGCCGGAGCATCGTCGGAGAACCTAACCGGCGGCATTGGG
GTTCCGACGATCGGGGGGGCCGAGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACATTGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATAC
AAGGATCACGTCTACCATGTTTGGGGTCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
TGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAATGGCATTGGCACATAGAAATATGAA
GATATGGCTAAACCCGCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
CGTGGTGCCCGCCCGCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG
ATCAGACTCGACTGAGGGTTGTGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC
CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTT
AGGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
ACCGAGGGTTACAGGAGCACATATTGGGTTCGG
Found at i:19128471 original size:26 final size:26
Alignment explanation
Indices: 19128435--19128487 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19128425 GTTGACTTAG
*
19128435 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19128461 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19128487 G
1 G
19128488 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19129764 original size:26 final size:26
Alignment explanation
Indices: 19129712--19129764 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19129702 GATGACTTAG
* *
19129712 GCATACGAAGTTCATTCCCAGTTTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
19129738 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
19129764 G
1 G
19129765 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:19130834 original size:898 final size:889
Alignment explanation
Indices: 19129014--19131012 Score: 2989
Period size: 898 Copynumber: 2.2 Consensus size: 889
19129004 ATGGGGGGGT
* *
19129014 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
1 CGGGGGGTGTACGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
19129079 CCTCATCAAACCTCAAGAACTCACACC-CACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
66 CCTCATCAAACCTCAAGAACTCACACCTC-CTTAAAGGGCATTTCAGATTTTACAGGTTTGCTGC
* * *
19129143 CAATAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCGAATGGTCACAAAATCTTGTACACT
130 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
19129208 TTGAGTTTTTAGCTGATTTTTTTTGTGCATGCCCAAAAAAATACAAGGATCATGTCTACCAAGTT
195 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
*
19129273 TGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAGTTTCAAAAATCAA
260 TGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAGTTTCAAAAATCAA
*
19129338 GAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
325 GAAAAATAAAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
19129403 AATTTACAAGGCAAAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
390 AATTTACAAGCCAAAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
19129468 CACCCTATCGATACACGGCTTGCGCATCCCGTCTCTTTGGCCGGCATAGTGCCCGCCCTCCCGCT
455 CACCCTATCGATACACGACTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCTCCCGCT
* * **
19129533 CGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATCAGACCAGATTGAGGG
520 CATTTCGTCGATCGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATCAGACCAGACCGAGGG
** * * * * *
19129598 TTGTGGCAGTAGGCTTGGCAGCACACAGAGTGGGACCCGGTCGATCCTCAGCTTGCGCATCCCAC
585 TTACGGCAATAGGCTCGGCAGCACACAGAGTGGGACCCGATCGATCCCCAGCTTACGCATCCCAC
** **
19129663 CCCTCTGGCCGGCTGAGTGCCCGCACGTTTGTTTCGTGGGATGACTTAGGCATACGAAGTTCATT
650 CCCTCTGGCCGGCTGAACGCCCGCACGCCTGTTTCGTGGGATGACTTAGGCATACGAAGTTCATT
* *
19129728 CCCAGTTTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACTAGACCGAAGGTTGCGACAGC
715 CCCAGTTTAAGCAAACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAAGGTTGCGACAGC
*
19129793 ACATACTGGGCTCGGACATGTGTTGGGGCCGCATTTTTCATCGTCGGGGCACCATCGTCAGAGCA
780 ACATACTGGGCTCGGACATGTGTT---G-CGC----TT-ATCGTCGGGGCACCATCATCAGAGCA
* * *
19129858 TCACCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGGGCGA
836 TCACCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGGCCGA
* *
19129912 CGGGGGGTGTACGCACATGATGTGTGATGGGTGATGGTACTTGGCCCTCATATTGGCCCCCTATC
1 CGGGGGGTGTACGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
19129977 CCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGGGCATTTTAGATTTTACAGGTTTGCTGCC
66 CCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGGGCATTTCAGATTTTACAGGTTTGCTGCC
*
19130042 AGTACCCATTAAAGTGTCT-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
131 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
19130106 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATTACGTCTACCAAGTT
196 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTT
* * *
19130171 TGGGGCCAAAACTCC-TCCG-AAAAATGTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATT
260 TGGGACCAAAACTCCTTCCGAAAAAAT-TTTAAAAAATCCCGAACCG-AAAAAGTTTCAAAAATC
** * *
19130234 GTGAAAAATAGAAAACGAGTTGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
323 AAGAAAAATAAAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
19130299 TGAATTTACAAGCCAAAAAAATGGCATTGGCACGCAGAGATATGAAGATGTGCCTAAACCCACCT
388 TGAATTTACAAGCCAAAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
19130364 ACCACCCTATTGATCCATGACTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCTCCCG
453 ACCACCCTATCGATACACGACTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCT----
*
19130429 CCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATCAGACC
514 ----CCCGCTCATTTCGTCGATCGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATCAGACC
** *
19130494 AGACCGAGGGTTACGGCAATAGGCTCGGCAGCACGTAGAGTGGGACCCGATCGATCCCCGGCTTA
575 AGACCGAGGGTTACGGCAATAGGCTCGGCAGCACACAGAGTGGGACCCGATCGATCCCCAGCTTA
* * *
19130559 TGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCCTGTTTCGTGGGTTGACTTAGGCATAC
640 CGCATCCCACCCCTCTGGCCGGCTGAACGCCCGCACGCCTGTTTCGTGGGATGACTTAGGCATAC
* * *
19130624 GGAGTTCATTCCCAGTTTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
705 GAAGTTCATTCCCAGTTTAAGCAAACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAAGG
*
19130689 TTGC-AGCAGCACATACTGGGCTC-GAGCATGT-TT-C-C-T-T-GTCGGGGCACCATCATCGGA
770 TTGCGA-CAGCACATACTGGGCTCGGA-CATGTGTTGCGCTTATCGTCGGGGCACCATCATCAGA
19130746 GCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATC-GGGGGGGCCGA
833 GCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGGCCGA
* ** * *
19130802 CGGGGGGGTTTACGCACATGATGTACGATGTGTGCTGGTACTTGGCCCTTATATTGGGCCCCTAT
1 C-GGGGGGTGTACGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
19130867 CCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGGTCATTTCAGATTTTACATGTTTGCTGC
65 CCCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGGGCATTTCAGATTTTACAGGTTTGCTGC
* *
19130932 CAGTAGCCGTTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
130 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
19130997 TCGAGTTTTTAGCTGA
195 TCGAGTTTTTAGCTGA
19131013 GTGCCCGTAC
Statistics
Matches: 1004, Mismatches: 81, Indels: 38
0.89 0.07 0.03
Matches are distributed among these distances:
890 11 0.01
891 196 0.20
892 60 0.06
894 1 0.00
896 6 0.01
897 95 0.09
898 372 0.37
899 2 0.00
900 1 0.00
905 5 0.00
906 255 0.25
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
CGGGGGGTGTACGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGGGCATTTCAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
GGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAGTTTCAAAAATCAAG
AAAAATAAAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCAAAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATACACGACTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCTCCCGCTC
ATTTCGTCGATCGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATCAGACCAGACCGAGGGT
TACGGCAATAGGCTCGGCAGCACACAGAGTGGGACCCGATCGATCCCCAGCTTACGCATCCCACC
CCTCTGGCCGGCTGAACGCCCGCACGCCTGTTTCGTGGGATGACTTAGGCATACGAAGTTCATTC
CCAGTTTAAGCAAACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAAGGTTGCGACAGCA
CATACTGGGCTCGGACATGTGTTGCGCTTATCGTCGGGGCACCATCATCAGAGCATCACCGGAGA
ACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGGCCGA
Found at i:19132163 original size:26 final size:26
Alignment explanation
Indices: 19132134--19132186 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19132124 CTTGACTTAG
* *
19132134 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
19132160 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
19132186 G
1 G
19132187 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:19134912 original size:716 final size:716
Alignment explanation
Indices: 19132295--19135008 Score: 4038
Period size: 717 Copynumber: 3.8 Consensus size: 716
19132285 GGGTTCCGAC
* * *
19132295 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
1 GATC-GGGGGGCCGGGGGGTGTACGCACATGATGTACGATGGGTGCTGGTACTTGACCCTTATAT
*
19132360 TGGCCCCCTATCCCTCATCAAACCTTGAA-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
65 TGGCCCCCTATCCCTCATCAAACC-TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
19132424 AAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
129 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
19132489 ATCTTGTACATTTTGAGTTTTTAGCTGAATTTTTTTGTGCGTGCCAA-AAAAATACAA-GGATCA
194 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA-AATGGATCA
* * * * *
19132552 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAATAGCAAAAA
258 CGTCCACCAAGTTTGGGGCAAAAAGTCCTTCCAAAAAAATTTTAAAAAATCCCAAACAGCAAAAA
* * * * *
19132617 GTTTCAAAAATCATGAAGAATAGAAAA-AAGTTGTCTTGCCATGAAACTTCACGTGGAGGCTTAA
323 GTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * * ** * *
19132681 GGGACCGTTGTATGAATTTACAAGCCATAAAAATGGTAATTGGAACACAAAAATATGAAGATGGG
388 GGGACCATTGTATGAATTTACAAGCCATAAAAATGG-CATTGGCATGCAGAAATATGAAGATGTG
* * * *
19132746 CCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATCCCA-TCTCTCTAGAC-GCAGTA
452 CCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCAT-CCAGTCACTCT-GGCTGGAGTA
* * * * * * *
19132809 TTGCCTGGCCGTCCGCCCAG-CAGCTCGTTCCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCG
515 TTGCCTGGACGCCCGACC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * * * * *
19132873 AGTGTAACATCAGATCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGTCATGTGCTGGTGT
579 AGTCTAAGA-CAAACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTTGGGCATGTGCTTGTGC
* * * *
19132938 CGTATTTTTCTTC-CCTGGGACACCATCGTCGGAGCATCGCCGGAG---C--A---------TTG
643 CGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCGGCGGTTTTG
*
19132988 GGGTTCCGGT
707 GGGTTTCGGT
* * * * * * ** *
19132998 GATCGGGGGGCCAGGAGGTGTGCGCACATGATGTGCGATTGGTGCCGGTACTTGGTCGTTATATT
1 GATCGGGGGGCCGGGGGGTGTACGCACATGATGTACGATGGGTGCTGGTACTTGACCCTTATATT
* * ** *
19133063 GGCTCCCTATCCCTCAACAAACCTGGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACA
66 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
19133128 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACGAAAT
131 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
19133193 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAATGGATCACGT
196 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAATGGATCACGT
* * * *
19133258 CCACCAAGTTTGGGGTAAAAAGTCTTTCCAAAAAAATTTTAAAAACTCCTAAACAGCAAAAAGTT
261 CCACCAAGTTTGGGGCAAAAAGTCCTTCCAAAAAAATTTTAAAAAATCCCAAACAGCAAAAAGTT
** *
19133323 TTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAGCTTCACGTGAAGGCTTAAGGG
326 TCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
19133388 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTA
391 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
*
19133453 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCAGTCACTCTGGCTGGAGTATTGCCT
456 AACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCAGTCACTCTGGCTGGAGTATTGCCT
19133518 GGACGCCCGACCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
521 GGACGCCCGACCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
19133583 GACAAACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTTGGGCATGTGCTTGTGCCGCATTTT
586 GACAAACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTTGGGCATGTGCTTGTGCCGCATTTT
19133648 TCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCGGCGGTTTTGGGGTTTCGG
651 TCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCGGCGGTTTTGGGGTTTCGG
19133713 T
716 T
19133714 GATCGGGGGGCCCGGGGGGTGTACGCACATGATGTACGATGGGTGCTGGTACTTGACCCTTATAT
1 GATCGGGGGG-CCGGGGGGTGTACGCACATGATGTACGATGGGTGCTGGTACTTGACCCTTATAT
*
19133779 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTAC
65 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
19133844 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACGAAA
130 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
19133909 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAATGGATCACG
195 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAATGGATCACG
* * **
19133974 TCCACCAAGTTTGGGGTAAAAAGTCTTTCCAAAAAAATTTTAAAAAATCCTGAACAGCAAAAAGT
260 TCCACCAAGTTTGGGGCAAAAAGTCCTTCCAAAAAAATTTTAAAAAATCCCAAACAGCAAAAAGT
** *
19134039 TTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAGCTTCACGTGAAGGCTTAAGG
325 TTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*
19134104 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCT
390 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
19134169 AAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCAGTCACTCTGGCTGGAGTATTGCC
455 AAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCAGTCACTCTGGCTGGAGTATTGCC
19134234 TGGACGCCCGACCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
520 TGGACGCCCGACCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
19134299 AGACAAACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTTGGGCATGTGCTTGTGCCGCATTT
585 AGACAAACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTTGGGCATGTGCTTGTGCCGCATTT
19134364 TTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCGGCGGTTTTGGGGTTTCG
650 TTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCGGCGGTTTTGGGGTTTCG
19134429 GT
715 GT
*
19134431 GATCGGGGGGGCGGGGGGTGTACGCACATGATGTACGATGGGTGCTGGTACTTGACCCTTATATT
1 GATCGGGGGGCCGGGGGGTGTACGCACATGATGTACGATGGGTGCTGGTACTTGACCCTTATATT
*
19134496 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACA
66 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
19134561 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
131 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
19134626 CTTGTATAGTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA-GGATCATG
196 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA-AATGGATCACG
* * * * ** *
19134690 TCTACCAAGTTTGGGGCCAAAACG-CCTTCTAAAAAAATTTAAAAAAATCCCAAACCTCAATAAG
260 TCCACCAAGTTTGGGG-CAAAAAGTCCTTCCAAAAAAATTTTAAAAAATCCCAAACAGCAAAAAG
* *
19134754 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAG
324 TTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * * *
19134819 GGACCTTTGTACGAATTTACATGCCATAAAATTGGCATTGGCATGCAGAAATATGAAGTTGTGCC
389 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * * * * *
19134884 TAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCGCTGGCCGGCA-AAGTG
454 TAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCAGTCACTCTGGCTGG-AGTATTG
* * *
19134948 CC----CGCCC-A---TCCGCTCGTTTCATCAGTTGGCTTAGGCATACGG-GTTCATTCCCAGTC
518 CCTGGACGCCCGACCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
19135004 TAAGA
583 TAAGA
19135009 TTGAACCAAA
Statistics
Matches: 1862, Mismatches: 123, Indels: 48
0.92 0.06 0.02
Matches are distributed among these distances:
701 3 0.00
702 310 0.17
703 231 0.12
704 68 0.04
705 1 0.00
707 20 0.01
708 31 0.02
711 1 0.00
712 5 0.00
716 484 0.26
717 708 0.38
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (716 bp):
GATCGGGGGGCCGGGGGGTGTACGCACATGATGTACGATGGGTGCTGGTACTTGACCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAATGGATCACGT
CCACCAAGTTTGGGGCAAAAAGTCCTTCCAAAAAAATTTTAAAAAATCCCAAACAGCAAAAAGTT
TCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCAGTCACTCTGGCTGGAGTATTGCCT
GGACGCCCGACCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
GACAAACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTTGGGCATGTGCTTGTGCCGCATTTT
TCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCGGCGGTTTTGGGGTTTCGG
T
Found at i:19136426 original size:884 final size:887
Alignment explanation
Indices: 19134274--19138573 Score: 3524
Period size: 884 Copynumber: 4.9 Consensus size: 887
19134264 GTTGGCTTAG
** * *
19134274 GCATACGGAGTTCATTCCCAGTCTAAGA-CAAACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
19134338 CTTGGGCATGTGCTTGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATCACCGGAG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCACCGGAG
* ** * ** * * *
19134402 AACCTGATCGGCGGTTTTGGGGTTTCGGTGATCGGGGGGGCGGGGGGTGTACGCACATGATGTAC
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
19134467 GATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * *
19134532 CCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATG
260 CACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TAAAAG
*
19134597 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTATAGTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTG--CA--TCGA--TTTTA-CTG-ATTTTTTTGT
* **
19134662 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACGCCTTCTAAAAAAA
381 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
19134727 TTTAAAAAAATCCCAAACC-TCAATAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
446 TTTAAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * * *
19134791 GCCACGAAACTTCACGTGAAGGCTTAAGGGACCTTTGTACGAATTTACATGCCATAAAATTGGCA
510 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
19134856 TTGGCATGCAGAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
575 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** * *
19134921 CATCCCGTCTCGCTGGCCGGCAAAGTGCCCG-CC-CATCCGCTCGTTTCATCAGTTGGCTTAGGC
640 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTCCGCTCGTTTCATCGGTTGGCTTAGGC
* * * * *
19134984 ATACGG-GTTCATTCCCAGTCTAAGATT-GAACCAAACCGAGGGTTACAGTAGCAGGATCGGCAG
705 ATACGGAGTTCATTCCCAGTCTAAGATTAG-ACGAGACCGAGGTTTGCAGTAGCAGGATCGACAG
** ** *
19135047 CATGCAGAGGGGGACCCAACCGATCCCCGACTTGAGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
769 CACACAGAGGGGGACCCGGCCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
** ** ** * *
19135112 CGTAAACTAATTTCGTGGGTTGACTTTGGCATACAGAGTTCATTCCCAGTCTAA
834 CACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
19135166 ACATACGGAGTTCATTCCTTGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
19135231 CTCG-GTCATGTGCTAGTGTCAAATTTTTCTTCATTGGGGCACCAT--C----G-----CCGGAG
66 CTCGAG-CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAG
* *
19135284 AACCTGACCGGCGGCATTGGTGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * * *
19135349 GTGCTGGGGGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTTC-AGAACTC
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAAGAACTC
* * *
19135413 ACACTCCCTTAAACAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AA
* * *
19135478 ATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTT
321 AAGGGGACACTTTTTTCAAATGGTCACAAAATC-T-TGCA--TCGA--TTTTA-CTG-ATTTTTT
* * *
19135543 TATGCATACCAA-AGAAAATACAAGGATCATGTCTGCCAAGTTTGGGGCCAAAAC-CCTTTCCGA
378 TGTGCATGCCAACA-AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGA
* *
19135606 AAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTG
441 AAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
19135671 TCTTGCCATGAAACGTCACGTGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAAT
506 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
19135736 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
571 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
19135801 TGCACATCCCGTCTCTCTGGCCGACGCAGTGCCCGCCCGCCTACCTGCTCGTTTCATCGGTTGGG
636 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCT-CC-GCTCGTTTCATCGGTTGGC
*
19135866 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACGAGACCGAGGTTTGCAGTAGCAGGATC
699 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACGAGACCGAGGTTTGCAGTAGCAGGATC
* * * * *
19135931 GACAGCACACAGAGGGGGACTCGGTCGATCCCCGGCATGTGCATCCC-CCCCTTCTGGCCAGCTG
764 GACAGCACACAGAGGGGGACCCGGCCGATCCCCGACTTGTGCATCCCGCCCC-TCTGGCCGGCTG
* * *
19135995 AGCGCCCACATGCTCGTTTCGTTGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAA
828 AGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
19136055 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTATGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
19136120 CTCGAGCATGTACTGTTGCCATATTTTTCTTCGCCGGGGCACCATCGCTGGAGCATCAACGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGA
** * *** *
19136185 ACCTGACAAGCGACATTGGGGTTCCGACGATCGGGGGGTTAGGGGGTGTGCGCACATTATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
19136250 GTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCAAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
* * * *
19136315 -CCACTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTCGCCATTAAAGTATCTAAAACG
261 ACC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAGG
19136379 GGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGATTTTTTAGCTGATTTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTG--CA--TCGA--TTTTA-CTGA-TTTTTTTGTG
* * * *
19136444 CATACCAACAAAAATACAAGGATCACGTCTTGAATCGCAAAAAGTTT--TG--AAAA-T-CGT--
382 CATGCCAACAAAAATACAAGGATCATGTC-T--A-C-C---AAGTTTGGGGCCAAAACTCCTTCC
** * * * *** * * * *** **
19136501 G-AAAAATAGAAAATGAGTCGTCTTGCCAT-GAAA-CTTC----A-CGTGAAGGCTTA-AGGGAC
439 GAAAAAATTTAAAA-AAATC-CCGAACCGTAAAAAGTTTCAAAAATCGTGAA-AAATAGA-AAAC
* * * * * * * * *** **
19136557 CA-TTGT-ATG-AATTTTGAAA-GTC-C-TAAAAATGGCTT-TGGCACGCAAAAATATGAAGATA
500 GAGTCGTCTTGCCA---TGAAACTTCACGT--GAA-GGCTTAAGGGAC-C-ATTGTATGAATTTA
* ** * ** ** * ** * **
19136615 -TA-CC-T--AAA-CCCA---CCTAC-CA-CCATATCGATCCACG-G-CT-TGCGCA--T-CCGG
557 CAAGCCATAAAAATGGCATTGGC-ACGCAGAAATAT-GA-AGATGTGCCTAAACCCACCTACCAC
* * *** ** * * * * ** *****
19136663 TCTCTCTGA-CCGACGTAGTGCCCGCCCGCCCG-CTCGTTTCGTC-A-GTTG-GCTTAGGGATAC
619 CCTATC-GATCC-ACGGCTTG--CG-CATCCCGTCTC-TCTGGCCGACGTAGTGC-CCGCCCGCC
*** * * * ** * * * * * * * *
19136723 GGAGTTCATTCCCAATC--TAAGATCAGACCAGATC-GAGTGT--TGCGGCAG-C-AGGA-TCGA
677 TCCGCTCGTT-TC-ATCGGTTGGCTTAG-GCATA-CGGAGT-TCATTC-CCAGTCTAAGATTAGA
* * **** * **
19136780 C-AGCACAC-AGAG---G-AG-ACCCGG-TCGATC--C-C-CAGCTTACGCATCCC-GCCCCTCT
736 CGAG-AC-CGAG-GTTTGCAGTAGCAGGATCGA-CAGCACACAG-AGGGGGA-CCCGGCCGATC-
*** * * * * ** ** * * * ** *
19136832 AGTTGGCTGAGTGCCAACACGCTCGTTTCGTGGTTGACTTAG-G--CATACG-GAG-TTCAT---
794 -CCCGACT-TGTG-CATCCCGC-C-CCTC-TGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGG
** *
19136889 TCCCACTCTAAGCATACGGAGTTCA-T----------
853 T-TGACT-TAGGCATACGGAGTTCATTCCCAGTCTAA
* **
19136915 ---T-C---G--------CAGTCTAAGATTGGACCAGACCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** **
19136965 CTCGAGCATGTGTTGGTGCCGCATATTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGA
* * * * *
19137030 ACCAGACCGGCGGCATTGGGGTTTCGACCATCGAGGGGGCCTGGGGGGTGTGCGCTCATGATATG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * * ** *
19137095 TGAGGGGTGCTGGTACTTTGCCCTTATATTGGCTTCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *** *
19137160 ACGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTTTAGTAGCAATTAAAGTGTCTAAAAT
259 ACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA-
*
19137225 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTCTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTG--CA--TCGA--TTTTA-CTGATTTT-TTTG
*
19137290 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
380 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
19137355 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAAAAAACTAGTCATCTT
445 ATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * **
19137420 GCCATCAAACTTCATGTGGAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATATCA
510 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
19137485 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCACGGCTTGCG
575 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
19137550 CATCCCGTCTCTCTAGCCGACGTTGTGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAA
640 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CC-TCCGCTCGTTTCATCGGTTGGCTTAG
* * *
19137615 GAATACGGAGTTCATTCCCAGTCTAAG-TTAGATTG-GACCGAGGGTTGTG-A-CAGCAGGATC-
703 GCATACGGAGTTCATTCCCAGTCTAAGATTAGA-CGAGACCGA-GGTT-TGCAGTAGCAGGATCG
** * *
19137675 AGCAGCACGTAGAGGGGGACCTGGCCGATCCCCGACTTGTGCATCCCGCCCTTCTGGCCGGCTGA
765 A-CAGCACACAGAGGGGGACCCGGCCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGA
* * * * * *
19137740 GTGCCCACACGTTTGTTTCGTGGGTTGATTTAGGCATATGGAGTTCATTCTCAGTCTAA
829 GCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
19137799 GCATACGGAGTTCGTTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGACAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
19137864 CTCGGGCATGTGCCGGTGCCGTATTTTTCTTCACCGGGGCACCATCG-TCGGAGCATCACCGGAG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCACCGGAG
* **
19137928 AACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGGGGCCGGAGGGAAGTGCGCAC-TGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGG-GGGGTGTGCGCACATGATGTG
* * * *
19137992 CGATGGGTGCTGGTACTTAGCCATTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
19138057 ACACCCTTAAAGAGCATTTGAGATATTACAGGTTTGCAT-CTAGTAGCCATTAAAATGTCTGAAA
259 ACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCT-AAA
* * *
19138121 TGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGTTGATTTTTTTT
322 AGGGGACACTTTTTTCAAATGGTCACAAAATCTTG--CA--TCGA-TTT-TA-CTGA--TTTTTT
* *
19138186 TGTGCATGCCAAAAAAAAATACAAGGATC-TCGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
378 TGTGCATGCC-AACAAAAATACAAGGATCAT-GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* *
19138250 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCG
441 AAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
19138315 TCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAAT
506 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
19138380 GGCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCGCGGCT
571 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
19138445 TGCGCATCCCGTCTCTTTGGTCGACGTAGTGCCCGCCCGATCGCCCTCCCGCTTGTATCGTCGGT
636 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC---CG-CCT-CCGCTCGTTTCATCGGT
* * * *
19138510 AGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-GTGGACCGAGGGTTGCAGTAGCA
695 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACG-AGACCGAGGTTTGCAGTAGCA
19138574 CATACTAGGC
Statistics
Matches: 2699, Mismatches: 490, Indels: 426
0.75 0.14 0.12
Matches are distributed among these distances:
840 6 0.00
842 1 0.00
843 1 0.00
844 5 0.00
845 124 0.05
846 7 0.00
847 139 0.05
848 95 0.04
849 12 0.00
852 9 0.00
853 18 0.01
854 18 0.01
855 3 0.00
856 3 0.00
857 4 0.00
858 2 0.00
860 4 0.00
861 6 0.00
862 15 0.01
863 8 0.00
864 10 0.00
865 21 0.01
866 21 0.01
867 17 0.01
868 6 0.00
869 5 0.00
870 22 0.01
871 30 0.01
872 20 0.01
873 27 0.01
874 21 0.01
875 5 0.00
876 6 0.00
877 15 0.01
878 5 0.00
879 21 0.01
880 21 0.01
881 9 0.00
882 41 0.02
883 26 0.01
884 460 0.17
885 10 0.00
886 3 0.00
887 6 0.00
888 37 0.01
889 237 0.09
890 6 0.00
891 22 0.01
892 44 0.02
893 75 0.03
895 2 0.00
896 18 0.01
897 266 0.10
898 170 0.06
899 394 0.15
900 36 0.01
901 5 0.00
902 4 0.00
903 55 0.02
904 14 0.01
905 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (887 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
ACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGCATCGATTTTACTGATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAA
TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGACGTAGTGCCCGCCCGCCTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATTAGACGAGACCGAGGTTTGCAGTAGCAGGATCGACAGCACACAGAGGGG
GACCCGGCCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTT
TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19136910 original size:26 final size:26
Alignment explanation
Indices: 19136874--19136926 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19136864 GTTGACTTAG
19136874 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
* *
19136900 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
19136926 G
1 G
19136927 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:19137809 original size:26 final size:26
Alignment explanation
Indices: 19137773--19137825 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19137763 GTTGATTTAG
* *
19137773 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19137799 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19137825 G
1 G
19137826 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19138236 original size:899 final size:897
Alignment explanation
Indices: 19136482--19138566 Score: 2945
Period size: 899 Copynumber: 2.3 Consensus size: 897
19136472 CTTGAATCGC
**
19136482 AAAAAGTTTTGAAAATCGTGAAAAATAGAAAA-TGAGTCGTCTTGCCATGAAACTTCACGTGAAG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACT-AGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
19136546 GCTTAAGGGACCATTGTATGAATTTTGA-AAGTCC-TAAAAATGGCTTTGGCACGCAAAAATATG
65 GCTTAAGGGACCATTGTATGAA-TTT-ACAAG-CCATAAAAATGGCATTGGCACGCAGAAATATG
* * *
19136609 AAGATATACCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCGGTCTCTCTGACC
127 AAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG-CC
* *
19136674 GACGTAGTGCCCG--C--CCGCCCGCTCGTTTCGTCAGTTGGCTTAGGGATACGGAGTTCATTCC
191 GACGTAGTGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCC
* ** * * *
19136735 CAATCTAAGATCAGACCAGATCGAGTGTTGCGGCAGCAGGATCGACAGCACACAGAGGAGACCCG
256 CAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGACAGCACACAGAGGAGACCCG
* **
19136800 GTCGATCCCCAGCTTACGCATCCCGCCCCTCTAGTTGGCTGAGTGCCAACACGCTCGTTTCGTGG
321 GCCGATCCCCAGCTTACGCATCCCGCCCCTCTAGCCGGCTGAGTGCCAACACGCTCGTTTCGTGG
* *
19136865 TTGACTTAGGCATACGGAGTTCATTCCCACTCTAAGCATACGGAGTTCATTCGCAGTCTAAGATT
386 TTGACTTAGGCATACGGAGTTCATTCCCACTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * **
19136930 GGACCAGACCGAGGGTTGCGATAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATATTTCT
451 GGACCAGACCAAGGGTTACGACAGCACATGCTGGCCTCGAGCATGTGCCGGTGCCGCATATTTCT
** ** *
19136995 TCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCAGACCGGCGGCATTGGGGTTTCGACCA
516 TCACCGGGGCACCATCGCCAGAGCATCACCGGAGAACCAGACCGGCGGCATTGGGGTTCCGACCA
** * * * *
19137060 TCGAGGGGGCCTGGGGGGTGTGCGCTCATGATATGTGAGGGGTGCTGGTACTTTGCCCTTATATT
581 TCGAGGGGGCCTGGGGGAAGTGCGCACATGATATGCGAGGGGTGCTGGTACTTAGCCATTATATT
** * *
19137125 GGCTTCCTATCCCTCATCAAACCTCGAGAACTCACACGCCCTTAAAGAGCATTTGAGATTTTACA
646 GGCCACCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATATTACA
* * *
19137190 GGTTTGCTTTTAGTAGCAATTAAAGTGTCTAAAATGAGGACACTTTTTTCAAATGGTCACAAAAT
711 GGTTTGCATCTAGTAGCAATTAAAATGTCTAAAATGAGGACACTTTTTTCAAATGGTCACAAAAT
* *
19137255 CTTGTACACTTCGAGTTTTTAGCTGATTTTCTTTGTGCATGCCAACAAAAATACAAGGATCACGT
776 CTTGTACACTTCGAGTTTGTAGCTGATTTTCTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
19137320 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
841 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
* * * * * *
19137377 AAAAAGTTTCCAAAATCGTGAAAAATAAAAAACTAGTCATCTTGCCATCAAACTTCATGTGGAGG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGG
**
19137442 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATATCATTGGCACGCAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* *
19137507 TGTGCCTAAACCCGCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACG
131 TGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GCCGACG
* * *
19137572 TTGTGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAAGAATACGGAGTTCATTCCCAGT
195 TAGTGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCCAGT
* * * ** * *
19137637 CTAAG-TTAGATTGGACCGAGGGTTGTGACAGCAGGATC-AGCAGCACGTAGAGGGGGACCTGGC
260 CTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGA-CAGCACACAGA-GGAGACCCGGC
** * * * * *
19137700 CGATCCCC-GACTTGTGCATCCCGCCCTTCTGGCCGGCTGAGTGCCCACACGTTTGTTTCGTGGG
323 CGATCCCCAG-CTTACGCATCCCGCCCCTCTAGCCGGCTGAGTGCCAACACGCTCGTTTCGT-GG
* * * * *
19137764 TTGATTTAGGCATATGGAGTTCATTCTCAGTCTAAGCATACGGAGTTCGTTCCCAGTCTAAGATC
386 TTGACTTAGGCATACGGAGTTCATTCCCACTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
19137829 GGATCGGACCAAGGGTTACGACAGCACATGCTGGCCTCGGGCATGTGCCGGTGCCGTATTTTTCT
451 GGACCAGACCAAGGGTTACGACAGCACATGCTGGCCTCGAGCATGTGCCGGTGCCGCATATTTCT
* * * * *
19137894 TCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGTATTGGGGTTCCGACGA
516 TCACCGGGGCACCATCGCCAGAGCATCACCGGAGAACCAGACCGGCGGCATTGGGGTTCCGACCA
* *
19137959 TCG-GGGGGCC-GGAGGGAAGTGCGCAC-TGATGTGCGATGGGTGCTGGTACTTAGCCATTATAT
581 TCGAGGGGGCCTGG-GGGAAGTGCGCACATGATATGCGAGGGGTGCTGGTACTTAGCCATTATAT
19138021 TGGCCACCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATATTAC
645 TGGCCACCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATATTAC
* *
19138086 AGGTTTGCATCTAGTAGCCATTAAAATGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAA
710 AGGTTTGCATCTAGTAGCAATTAAAATGTCTAAAATGAGGACACTTTTTTCAAATGGTCACAAAA
* * *
19138151 TCTTGTACACTTCGAGTTTGTAGTTGATTTTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCT
775 TCTTGTACACTTCGAGTTTGTAGCTGA-TTTTCTTTGTGCATGCC-AAAAAAAATACAAGGATCA
*
19138216 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGT
838 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
*
19138276 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
19138341 CTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* * *
19138406 TGTACCTAAACCCACCTACCACCCTATCGATCCGCGGCTTGCGCATCCCGTCTCTTTGGTCGACG
131 TGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GCCGACG
* * * * *
19138471 TAGTGCCCGCCCGATCGCCCTCCCGCTTGTATCGTCGGTAGGCTTAGGCATACGGAGTTCATTCC
195 TAGTGCCCGCCCG-T---CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCC
*
19138536 CAGTCTAAGATCAGAGTGGACCGAGGGTTGC
256 CAGTCTAAGATCAGACTGGACCGAGGGTTGC
19138567 AGTAGCACAT
Statistics
Matches: 1047, Mismatches: 123, Indels: 31
0.87 0.10 0.03
Matches are distributed among these distances:
893 3 0.00
894 101 0.10
895 78 0.07
896 3 0.00
897 214 0.20
898 142 0.14
899 438 0.42
900 1 0.00
903 49 0.05
904 18 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
TGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGCCGACGT
AGTGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCCAGTC
TAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGACAGCACACAGAGGAGACCCGGCCGA
TCCCCAGCTTACGCATCCCGCCCCTCTAGCCGGCTGAGTGCCAACACGCTCGTTTCGTGGTTGAC
TTAGGCATACGGAGTTCATTCCCACTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
AGACCAAGGGTTACGACAGCACATGCTGGCCTCGAGCATGTGCCGGTGCCGCATATTTCTTCACC
GGGGCACCATCGCCAGAGCATCACCGGAGAACCAGACCGGCGGCATTGGGGTTCCGACCATCGAG
GGGGCCTGGGGGAAGTGCGCACATGATATGCGAGGGGTGCTGGTACTTAGCCATTATATTGGCCA
CCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATATTACAGGTTT
GCATCTAGTAGCAATTAAAATGTCTAAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCGAGTTTGTAGCTGATTTTCTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
Found at i:19139178 original size:718 final size:718
Alignment explanation
Indices: 19137799--19139291 Score: 2183
Period size: 718 Copynumber: 2.1 Consensus size: 718
19137789 CTCAGTCTAA
* * * * * *
19137799 GCATACGGAGTTCGTTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGACAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCG-TAGCACATACTGGC
* * * *
19137864 CTCGGGCATGTGCCGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
65 CTCGGGCAAGTGCCGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCACCAGAGA
* * *
19137929 ACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGGGGCCGGAGGGAAGTGCGCACTGATGTGCG
130 ACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGCCGGAGGGAAGTGCGCACTGATGTGCA
*
19137994 ATGGGTGCTGGTACTTAGCCATTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGCACTTAGCCATTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCACAC
*
19138059 ACCCTTAAAGAGCATTTGAGATATTACAGGTTTGCATCTAGTAGCCATTAAAATGTCTGAAATGA
260 ACCCTTAAAGAGCATTTGAGATATTACAGGTTTGCATCCAGTAGCCATTAAAATGTCTGAAATGA
* * *
19138124 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGTTGATTTTTTTTTGT
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGATATATTTTTGT
* * *
19138189 GCATGCCAAAAAAAAATACAAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
390 GCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAAATCCTTCTGAAAAA
* * ** *
19138254 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTT
455 ATTATAAAAAATCCCAAACCCCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACAAGTCGTCTT
19138319 GCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * *
19138384 TTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCGCGGCTTGCG
585 TTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCG
* * * * * *
19138449 CATCCCGTCTCTTTGGTCGACGTAGTGCCCGCCCGATCGCCCTCCCGCTTGTATCGTCGGTAGGC
650 CATCACGTCTCTCTGGCCGACGTAGTGCCCACCCGACCGCCCTCCCACTTGTATCGTCGGTAGGC
19138514 TTAG
715 TTAG
19138518 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAGT-GGACCGAGGGTTGCAGTAGCACATACTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGACCGAGGGTTGC-GTAGCACATACT-G
* ** *
19138582 G-CTCGGGCAAGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCCAGA
63 GCCTCGGGCAAGTGCCGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCACCAGA
* * **
19138646 GAACCTGACCGGTAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
128 GAACCTGACCGGCAGCATTGGGGTTCCGACGATC-GGGGGGCCGGAGGGAAGTGCGCAC-TGATG
* * * * *
19138711 TGCAATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAATCTCGAGAACTC
191 TGCAATGGGTGCTGGCACTTAGCCATTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTC
* * *
19138776 ACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTTTGA
256 ACACACCCTTAAAGAGCATTTGAGATATTACAGGTTTGCAT-CCAGTAGCCATTAAAATGTCTGA
* *
19138839 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATATT
320 AATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGATATATT
*
19138903 TTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAAATCCTT-TC
385 TTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAAATCCTTCT-
* *
19138966 GAAAAAATTATAAAAAATCTCAAACCCCAAAAAGTTT-AGAAAATCCTGAAAAATAGAAAACGAG
449 GAAAAAATTATAAAAAATCCCAAACCCCAAAAAGTTTCA-AAAATCCTGAAAAATAGAAAACAAG
* *
19139030 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAGA
513 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAA
* * *
19139095 AATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATGCATG
578 AATGGCATTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCAATCCACG
** * *
19139160 GCTTGCGCATCACGTCTCTCTGGCCGGTGTAGTGCCCACCCGACCGCCCTCCTACTTGTTTCGTC
643 GCTTGCGCATCACGTCTCTCTGGCCGACGTAGTGCCCACCCGACCGCCCTCCCACTTGTATCGTC
*
19139225 GGTTGGCTTAG
708 GGTAGGCTTAG
* * * * *
19139236 GCATACGGAGTTCATTTCCAATCTAAGATTAGATCAGACTGAGGGTTGCGGTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGC-GTAGCA
19139292 GGATCGGTAG
Statistics
Matches: 691, Mismatches: 74, Indels: 19
0.88 0.09 0.02
Matches are distributed among these distances:
717 3 0.00
718 333 0.48
719 154 0.22
720 134 0.19
721 67 0.10
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (718 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGTAGCACATACTGGCC
TCGGGCAAGTGCCGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCACCAGAGAA
CCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGCCGGAGGGAAGTGCGCACTGATGTGCAA
TGGGTGCTGGCACTTAGCCATTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCACACA
CCCTTAAAGAGCATTTGAGATATTACAGGTTTGCATCCAGTAGCCATTAAAATGTCTGAAATGAG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGATATATTTTTGTG
CATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAAATCCTTCTGAAAAAA
TTATAAAAAATCCCAAACCCCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACAAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGC
ATCACGTCTCTCTGGCCGACGTAGTGCCCACCCGACCGCCCTCCCACTTGTATCGTCGGTAGGCT
TAG
Found at i:19139421 original size:26 final size:26
Alignment explanation
Indices: 19139392--19139473 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
19139382 TGGGTTGACT
19139392 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
19139418 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
* *
19139444 TAAGCATACGGAGTTTATTCCCAATC
1 TAAGCATACGGAGTTCATTCCCAGTC
19139470 TAAG
1 TAAG
19139474 ATCAAACCGG
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.28
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:19140846 original size:26 final size:26
Alignment explanation
Indices: 19140797--19140849 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19140787 GTTGGCTTAG
*
19140797 GCATACGGAGTTCATTCTAGGTCTAA
1 GCATACGGAGTTCATTCCAGGTCTAA
*
19140823 GCATGCGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCAGGTCTAA
19140849 G
1 G
19140850 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAGGTCTAA
Found at i:19141818 original size:11 final size:11
Alignment explanation
Indices: 19141799--19141831 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
19141789 GTCGGGGCAC
19141799 CATCGTCGGAG
1 CATCGTCGGAG
*
19141810 CATCTTCGGAG
1 CATCGTCGGAG
19141821 CATCGTCGGAG
1 CATCGTCGGAG
19141832 AACCTGACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.27, G:0.33, T:0.21
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:19143057 original size:893 final size:890
Alignment explanation
Indices: 19140776--19143637 Score: 3622
Period size: 893 Copynumber: 3.2 Consensus size: 890
19140766 GCCCTTCCGT
* * * * *
19140776 TCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATT-CTAGGTCTAAGCATGCGGAGTTCATTC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCATACGGAGTTCATTC
* * *
19140840 CCAGTCTAAGATCAGACCGAACCAAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGT
65 CCAGTCTAA-ATCAGACAG-ACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* **
19140905 GCCATATTTTTCTTCA-TCGGGGCGCCATCGTCGGAGCATCG-TCGGAGAACCTGACTAACGGCA
128 GCCATATTTTTCTTCACTCGGGGCACCATCGTCGGAGCATCGCTCGGAGAACCTGACCGACGGCA
* *
19140968 TTGGGGTTCCGACGATCAGGGGGGCCGGAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGT
193 TTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
19141033 ACTTGGACCTTATATTGTCCCCCTATCCCTCATCAAACCTGGAGAGCTCACACCCCCTTAAAGAG
257 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAG
* *
19141098 CATTTGAGATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTT
322 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
19141163 CAAATAGTCATAAAATCTTCTTCACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAA
387 CAAATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
*
19141228 AATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
452 AATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* ** * * *
19141293 TGAACCGTAAAAAGTTTCAAAAATTTTAAAAAATAGAAAACGAGTTGTCTTGCAATGAAACTTCA
517 CGAACCGTAAAAAGTTTCAAAAATCAT-GAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
19141358 CGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGCAA
581 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
*
19141423 TATGAAGATGTGCC-AAACCCACCTACCACCCTTTCGATCCACGGCTTGCGCATCCCGTCTCTCT
646 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
*
19141487 GGCCGGCGTAGTG-C-CCGCCCG--C-CCGCTCGTGTCGAT-GGTTGGCTTAGGCATACGGAGTT
711 GGCCGGCGTAGTGCCGCCGCCCGCCCGCCGCTCGTTTC-ATCGGTTGGCTTAGGCATACGGAGTT
* * * *
19141546 GATTCTCAGTCTAAGATCGGACCGGACCGATGGTTGCAGCAGCATGATCGACAGCACACAGAGGG
775 CATTC-CAGTCTAAGATCGGACCAGACCGATGGTTGCAGCAGCAAGATCGACAGCACGCAGAGGG
*
19141611 GGA-CCCGATCGATCCTTGACTTGCGCATCCCGCCCCTCTGGACAGCTGAGCCCCCGCACGC
839 GGATCCC---CG------G-CTTGCGCATCCCGCCCCTCTGGACAGCTGAGCCCCCACACGC
* * * * *
19141672 TCGTTTCATGGGTTGTCTTAGGCATACGGGGTTGATTACCAGTCTAAG-AT-C-G-G--------
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
*
19141725 -A--C-----C---C-GA-CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
66 CAGTCTAAATCAGACAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* *
19141777 GGT-TTTTTCTTC-GTCGGGGCACCATCGTCGGAGCATCTTCGGAGCATCGTCGGAGAACCTGAC
131 -ATATTTTTCTTCACTCGGGGCACCATCGTCGGAGCA---TC---G---C-TCGGAGAACCTGAC
* * *
19141840 CGACGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGGAGTGTGCACATGATGTGCGATGGG
185 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
** * * *
19141905 TAATGGTACTTGGCCCTTATATTGGCCCACTATACCTCATCAAACCTTGAGAACTCACACCCCCT
250 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCT
* * *
19141970 TAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACA
315 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
19142035 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTGTTTTGTGCATGC
380 CTTTTTTCAAATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGC
**
19142100 CAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAAAAAATTTTAA
445 CAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * *
19142164 AAAATCCCGAACTGCAAAAAGGTTTCAAAAATCGTGAAAATAGAAAACGAGTCATCTTGCCATGA
510 AAAATCCCGAACCGTAAAAA-GTTTCAAAAATCATGAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
19142229 AACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCAC
574 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
19142294 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCTCATCCCG
639 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
19142359 TCTCTCTGGTCGGCGTAGTGCCTGCTCGCCCGCCCGTCCGCTCGTTTCATCGATTGGCTTAGGCA
704 TCTCTCTGGCCGGCGTAGTGCC-GC-CGCCCGCCCG-CCGCTCGTTTCATCGGTTGGCTTAGGCA
* * * * *
19142424 TACGGAGTTCATTGCCAGTCTAAGATTGGACCAGACTGAGGGTTG-AGGCAGCAAGATTGGCAGC
766 TACGGAGTTCATT-CCAGTCTAAGATCGGACCAGACCGATGGTTGCA-GCAGCAAGATCGACAGC
* * *
19142488 ACGCAGTGGGGGATCCCCGGCTTGCGCATCCCCCCCCTCTGGCCAGCTGAGCCCCCACACGC
829 ACGCAGAGGGGGATCCCCGGCTTGCGCATCCCGCCCCTCTGGACAGCTGAGCCCCCACACGC
* *
19142550 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * *
19142615 CTGTCTAATATCGGATCAGACTGAGGGTTGCAGCAGCACATGCTAGGCTCGGGCAAGTGCTGGTG
66 CAGTCTAA-ATCAGA-CAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* *
19142680 CCGTATTTTTCTTCACT-GGGGCACCATCGTCGGAGCATTGCT-GGAGAACCTGACCGACGGCAT
129 CCATATTTTTCTTCACTCGGGGCACCATCGTCGGAGCATCGCTCGGAGAACCTGACCGACGGCAT
* * *
19142743 TGGGATTCTGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
194 TGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
19142807 TTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCA
259 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCA
* *
19142872 TATGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
324 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * *
19142937 AAT-GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGTACAAGCCAAAAAAAA
389 AATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * **
19143001 TACAAGGATCACCTCTACCAAATTTGGAACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
454 TACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
** * *
19143066 AACCGTAAAAAGTTTTGAAAATCATGAAAAACAGAAAACAAGTCGTCTTGCCATGAAACTTCACG
519 AACCGTAAAAAGTTTCAAAAATCATG-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
19143131 TGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAATA
583 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* *
19143196 TGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGG
648 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * *
19143261 CCAGCGTAGTGCCCGCCCGCCTGCCCGCCCGTTCATTTCTTCGGTTGGCTTAGGCATACAGAGTT
713 CCGGCGTAGTG-CCG-CCGCCCGCCCG-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* * * * * * * *
19143326 CATTCCCAATCTAATATCGAACCAGACCGATGGTTGTAGCAGTAGGATCGACAGCATGTAGAGGG
775 CATT-CCAGTCTAAGATCGGACCAGACCGATGGTTGCAGCAGCAAGATCGACAGCACGCAGA-GG
* * * * * * * * * *
19143391 GGACCCGATCGATCGTCGGCTTGTGCATCCCGTCCCTTTAGTCGGCTGAGCACCTAAACGC
838 GG----GATC---C-CCGGCTTGCGCATCCCGCCCCTCTGGACAGCTGAGCCCCCACACGC
* *
19143452 TCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCT
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
*
19143517 CAGTCTAAAATCAGACCAGACCGAGGGTTGC-GACAGCACATGCTGGGCTCGAGCATGTGCTGGT
66 CAGTCT-AAATCAGA-CAGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * *
19143581 GTCACATTTTTCTTCGC-CAGGGCACCATCGTCGGAGCATCACT-GGAGAACCTGACCG
128 GCCATATTTTTCTTCACTCGGGGCACCATCGTCGGAGCATCGCTCGGAGAACCTGACCG
19143638 GTACCATTGG
Statistics
Matches: 1705, Mismatches: 187, Indels: 142
0.84 0.09 0.07
Matches are distributed among these distances:
869 73 0.04
870 2 0.00
871 1 0.00
872 3 0.00
875 2 0.00
878 223 0.13
879 316 0.19
880 48 0.03
881 2 0.00
882 2 0.00
883 7 0.00
885 3 0.00
886 3 0.00
887 86 0.05
888 4 0.00
892 97 0.06
893 453 0.27
894 51 0.03
895 3 0.00
896 39 0.02
897 2 0.00
898 4 0.00
899 2 0.00
901 2 0.00
902 198 0.12
903 3 0.00
904 4 0.00
905 71 0.04
906 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
CAGTCTAAATCAGACAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
ATATTTTTCTTCACTCGGGGCACCATCGTCGGAGCATCGCTCGGAGAACCTGACCGACGGCATTG
GGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
CAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
CCGTAAAAAGTTTCAAAAATCATGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
GCGTAGTGCCGCCGCCCGCCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCC
AGTCTAAGATCGGACCAGACCGATGGTTGCAGCAGCAAGATCGACAGCACGCAGAGGGGGATCCC
CGGCTTGCGCATCCCGCCCCTCTGGACAGCTGAGCCCCCACACGC
Found at i:19143510 original size:26 final size:26
Alignment explanation
Indices: 19143473--19143524 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19143463 GTTGACTTAG
19143473 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
19143499 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19143525 AATCAGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19146019 original size:867 final size:868
Alignment explanation
Indices: 19143795--19149854 Score: 7166
Period size: 864 Copynumber: 6.9 Consensus size: 868
19143785 CCCAATCTAA
* *
19143795 GCATACGGAGTTCATTCCCCGTCTAATATCGGATCAAACCGAGGGTTGCGGCAGCACATGCT-GG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19143859 CTCAGGCTTGTGCTGGGGCCGCATTTTTCTTTAC-CTGGGCACCATCGTCAGAGCATTGCTGGAG
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCACCA---T-----CA-T-CCGGAG
* * * * * * * *
19143923 AACTTGACCGGCAGCATT-GGGATTTCGACGATCGCGGGGGGCAGGGGGTGTGCGCACATGATGT
121 AACCTGACCGACGGCATTAGGG-TTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
19143987 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCAAGAACTCA
185 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
19144052 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
250 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
19144117 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTG-ATTTTTTT
315 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
19144181 GTGCATGCCATCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCCAAACTCCTT-TAGAAA
380 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAA
* * **
19144245 AAATTTCAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
444 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
19144310 TTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGG
509 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
19144375 CATTGGCACATAGAAATATGAAGTTGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTA
574 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
19144440 CGCATCCCGTCTCTCTGGCCAGCGTAGTGCTCGCCCGCCCGTCC-GACCC-CTTGTTTCATCGGT
639 CACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCTG-CCCGCTCGTTTCATCGGT
* * * * **
19144503 TGGCTTAGGCATACAGAGTTCATTCCCAGTATAAGATCGAACTAAACCAAACTAAGGGTTGCGAA
702 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-T----CAGACTAAGGGTTGCGGC
* * * *
19144568 AGTAGGATC-AGCAGCATGCAGAGGGGGACCCGACCGATCCCTG-GCTTGCGCATCCTGCCCCTT
762 AGCAGGATCGA-CAGCATGTAGAGGGGGACCCGACCGATCCC-GAGCTTGCGCATCCCGCCCCTC
**
19144631 TGGCTAGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
825 TGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
* * * ***
19144675 GCATACGGAGTTCTTTCCCAGTCTAAG--C--AT---A-C-AGAGTT-CATTTGCAGTCTGGTGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGC---GGCAG-CACATGC
*
19144730 TGGGCTCAGGCATGTGGTGGTGCCGCATTTTTCTTCAC-CGGGGCACCATCATCGGAGCATCATC
62 TGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCA-C--CAT-----CATC--C
* * **
19144794 GGAGAACCTGACC-AGCGGCATTGGGGTTCTGGCGATCGAAAGGGCCAGGGGGTGTGTGCGCACA
117 GGAGAACCTGACCGA-CGGCATTAGGGTTCCGGCGATCGAGGGGGCC-GGGGG-GTGTGCGCACA
19144858 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
179 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
19144923 AACTCACAGCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGT
244 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
19144988 CTGAAATGGGGACACTTTTTTCAAATGGTCACCAAATCTTGTACACTTCGAGTTTTTTGCTGAAT
309 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* *
19145053 TTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAGCTCCTTC
374 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * ** ** *
19145118 CGAAAAAATTTTAAAAAATCCCTAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
439 TGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* ** *
19145183 TCGTCTTGCCATGAAACTTGAAATGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAA
504 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
19145248 AATGGCATTGGTATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
569 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
19145313 GCTTGCACTTCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTTGCCCGCTCGTTTCGTC
634 GCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCATC
* * *
19145378 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAGGATCGGATCGGACCAAGGGTTGCGGCAG
699 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTAAGGGTTGCGGCAG
** * * * * *
19145443 CAGGATCGACAGCACATAGAGGGGGGCCTGGCCGATCCCGAACTTGCGCATCCCGCCCCTTTGGC
764 CAGGATCGACAGCATGTAGAGGGGGACCCGACCGATCCCGAGCTTGCGCATCCCGCCCCTCTGGC
**
19145508 CGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
829 CGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
* **
19145548 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGCGGCAGCACATGCTGGG
* *
19145613 TTCAGGCATGTTCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCA-CCGGAGAACCTGACCG
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCACCATCATCCGGAGAACCTGACCG
*
19145676 ACGGCATTAGGGTTCCGGCGATCGAGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTG
131 ACGGCATTAGGGTTCCGGCGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * *
19145741 CTGGTACTTGGCCCATATATTGGCCGCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTG
195 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * * *
19145806 AAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCTATCAAAGTGTCTCAAATGGGGACACA
260 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
19145871 TTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
325 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * **
19145936 ACAAAAATACAAGGATAATGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAA
390 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* * * *
19146001 AAGCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAA
455 AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
19146066 CGTCACGTGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
520 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
19146131 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTC
585 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTC
* * * * *
19146196 TCTCTGGCCGACGCAGT----GCCCGCCCGCCTACCTGCTCGTTTCATCGGTTGGGTTAGGCATA
650 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATA
* ** * * *
19146257 CGGAGTTCATTCCCAGTCTAAGATTGGATTGGACTGAGGGTTGTGGCAGTAGGATCGACAGCATG
715 CGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTAAGGGTTGCGGCAGCAGGATCGACAGCATG
** * * * * *
19146322 TA-A-AAGG----G---TA-CCC-AGCTTGCGCATCCTGCCCCTGTGGCCGACTGAGCGACCACA
780 TAGAGGGGGACCCGACCGATCCCGAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACA
*
19146376 CGCTCG-TTCTGTCGGTTGACTTAG
845 CGCTCGTTTC-GTGGGTTGACTTAG
*
19146400 GCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A-TC----A---AACC-G--
* * *
19146465 CAAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTC-GTCGGG
42 --AGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACTCGGG
* * * * *
19146529 GCACCATCGTCCGAGCATCGCCGGAGAACCTGATCGGC-ACATTGGGGTTCCGGTGATC-AGGGG
105 GCACCA---T-----CAT--CCGGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGA-GGG
* * * *
19146592 GGTCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAGTTGGCCCTTAAATTGGCCCCCT
159 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
19146657 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
224 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
19146722 GCCAATAGCCATTAAAGTGTCTAAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
289 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
19146787 CTTTGAGCTTTTAGCTGAATTTTTTTGTGCATGGCAACAAAAATACAAGGATCACATCTACCAAG
354 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* ** *
19146852 TTTGGGGCTAAAACTCCTT-TCGAAAAAATTAAAAAAAATCCCGAATCGTAAAAAGTTTCAAAAA
419 TTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* * * * *
19146916 TCGTAAAAAATAAAAAAGGAGTCG-CTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
483 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
19146980 CATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
548 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
19147045 CTACCATCCTATCGATCCATGGCTTGTACATCCCGTCTTTCTGGCCGGTGTAGTGCCCGCCCGCC
613 CTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC
* * * * * *
19147110 TGCCCGTCTGCCCGCTCGTTTCCTCGGTTGGCTTAGGCATATGAAGTTCAATCCCAGTCTAATAT
675 -GCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * *
19147175 CAGATCAAACTAAGGGTTGCGGCAGTAGGATCGATAGAATGTAGAGGGGGACCCGACCAATCCCC
739 CGGATCAGACTAAGGGTTGCGGCAGCAGGATCGACAGCATGTAGAGGGGGACCCGACCGAT-CCC
** * * *
19147240 G-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGTTCATTTCATGGGTTGACTTA
803 GAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTA
19147304 G
868 G
* * * ***
19147305 GCATATGTAGTTCATTCCCAGTCTAAGATTGGATTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
19147370 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCA-TCGGGGCACCATC-GCCAAAGAACCTGACCG
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCACCATCATCCGGAGAACCTGACCG
* * * * *
19147433 GCGACATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTGCGATGGGTGC
131 ACGGCATTAGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
19147498 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATACCCCCTTAA
196 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
19147563 AGAGCATTTGAGATTTTACAGGTTTGTTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
261 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
19147628 TTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTT-T---TG----
326 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
19147685 --------C----AT---G----CCAAGTTTGGGGCCAAAAATCCTTTTGAAAAAATTTTAAAAA
391 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
** * * * *
19147731 ATCTTGAACTGCAAAAGGTTTCAAAAATCATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAAC
456 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
19147796 TTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGATGCA
521 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* *
19147861 GAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCT
586 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCT
** ** * * * * *
19147926 CTCTGGCCGATGTAGTGCCCATCCGCTCGCCTACCTGTTCGTTTCGTCGGTTGGCTTAGGCATAC
651 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * * * * * * * * *
19147991 AGTGTTCATTCCCAGTCTAA-ATTGGACCAGAGTGATGGTTACAGCAGCAGGATCGGCAGCATGT
716 GGAGTTCATTCCCAGTCTAAGATCGGATCAGACTAAGGGTTGCGGCAGCAGGATCGACAGCATGT
** *
19148055 AGAGGGGGACCCGGTCGATCCTCG-GCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACA
781 AGAGGGGGACCCGACCGATCC-CGAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACA
19148119 CGCTCGTTTCGTGGGTTGACTTAG
845 CGCTCGTTTCGTGGGTTGACTTAG
**
19148143 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATTGGATAGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CGGA--TCA-AACC-G----AG---GG-T-----
* * ** * *
19148208 TGAAGGTTACGGCAGCACATGCTAGGCTC-GAGCATGTGCTGTTGCCATATTTTTTTTC-GTCGG
47 T----G---CGGCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCACTCGG
* *
19148271 GGCACCATCACCGGACATCGTCGGAGAACCTGACCGACGGTATTAGGGTTCCGGCGATCGGGGGG
104 GGCACCAT-------CATC--CGGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGAGGGG
* * * * * * *
19148336 GCCAAGGGGGTGTGCACACACGATGTGCGATTGGTACTGGTACTTGGCCCTTATATTAGCCCCTT
160 GCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
19148401 ATCCCTCATCAAACCTCGAGAACTCATACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
224 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
19148466 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACA
289 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
19148531 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
354 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
19148596 TTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAATATCCCGAACCGTAAAAATTTTCAAAAAT
419 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* *
19148661 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTT
484 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* ** **
19148726 TTGAATTTACAATTCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACC
549 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
** * * *
19148791 TACCACCCTATCGATCCACGGCTTGTTCATCCCGTCTCTCTGGCCGACGTAGTGCCCACTCGCCC
614 TACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * * * * * *
19148856 GCCCGCCCGCTCATCTCGTAGGTTGGCTTAGGCATACGAAGTTCATTCCCATTCTAAGATCAGA-
679 GCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
* * * * * * * * *
19148920 CTGGACCAAGGGTTGCGACAACAGGATCGGCAGCAAGTAGA-GTGGACCCGACCGATCCCCAACT
744 C-AGACTAAGGGTTGCGGCAGCAGGATCGACAGCATGTAGAGGGGGACCCGACCGATCCCGAGCT
* * * *
19148984 TCCACATCCCGCCCCTCTGGTCGGCTGAGCGCCTACACGCTCGTTTCGTGGGTTGACTTAG
808 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
* * * ** *
19149045 GCATACGGAGTTCATTCCCAGTCCAAGACCAGA-CTGGATCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AAACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
19149109 GCTCGGGCATGTGCTGGTGTCGTATTTTTCTTC-GTCGGGGCACCATCA-CTGGAGAACCTGACC
65 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCACCATCATCCGGAGAACCTGACC
* * * * *
19149172 GACGTCATTAGGGTTCCCGCGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGAT
130 GACGGCATTAGGGTTCCGGCGATCGAGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGG-G
*
19149237 TG-TGGTACTTGGCCC-TATATTGGCCCCCTATCCCTCATCAAACCTC-AGGAACTTACA-CCCC
193 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCCCC
* **
19149298 TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAAGGAC
257 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
19149363 ACTTTTTTCGAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
322 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
19149428 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCACAACTCCTTCTGAAAAAATTGTG
387 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
* *
19149493 GAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
452 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
19149558 AAACTTCACGTGAAGGCTTCAA-GGACCATTGTATGAATTTACAACCCATAAAAATGGCTTTGGC
517 AAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * * *
19149622 ATGCAGAAATTTGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCATGGCTTGCGCATCT
581 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCC
* * * * *
19149687 TGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTTGTTTCATCAGTTGGCTTAGG
646 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGG
* * * * * *
19149752 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAACAGTATCGACAG
711 CATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTAAGGGTTGCGGCAGCAGGATCGACAG
* * * *
19149817 CACGCAGAGGGGGACCCGACCGATCCCTAACTTGCGCA
776 CATGTAGAGGGGGACCCGACCGATCCCGAGCTTGCGCA
19149855 ATAAGTTTAG
Statistics
Matches: 4474, Mismatches: 529, Indels: 369
0.83 0.10 0.07
Matches are distributed among these distances:
837 2 0.00
838 132 0.03
839 52 0.01
840 5 0.00
842 79 0.02
843 154 0.03
844 1 0.00
848 2 0.00
849 2 0.00
851 5 0.00
852 79 0.02
853 6 0.00
854 2 0.00
855 1 0.00
856 1 0.00
857 2 0.00
861 3 0.00
862 1 0.00
863 98 0.02
864 529 0.12
865 67 0.01
866 81 0.02
867 460 0.10
868 63 0.01
869 231 0.05
870 3 0.00
871 9 0.00
872 3 0.00
873 138 0.03
874 49 0.01
875 281 0.06
876 70 0.02
877 204 0.05
878 394 0.09
879 111 0.02
880 28 0.01
881 2 0.00
882 5 0.00
883 3 0.00
884 3 0.00
886 150 0.03
887 306 0.07
888 24 0.01
889 18 0.00
890 1 0.00
891 2 0.00
892 4 0.00
893 2 0.00
894 89 0.02
895 3 0.00
896 3 0.00
897 2 0.00
898 1 0.00
900 4 0.00
901 3 0.00
902 385 0.09
903 34 0.01
904 2 0.00
905 77 0.02
906 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (868 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCACCATCATCCGGAGAACCTGACCG
ACGGCATTAGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCT
CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGATCAGACTAAGGGTTGCGGCAGCAGGATCGACAGCATGT
AGAGGGGGACCCGACCGATCCCGAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACAC
GCTCGTTTCGTGGGTTGACTTAG
Found at i:19146429 original size:26 final size:26
Alignment explanation
Indices: 19146400--19146452 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19146390 GTTGACTTAG
19146400 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19146426 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19146452 G
1 G
19146453 ATCGAACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19148179 original size:26 final size:26
Alignment explanation
Indices: 19148143--19148195 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19148133 GTTGACTTAG
*
19148143 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
19148169 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
19148195 G
1 G
19148196 ATTGGATAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:19150053 original size:398 final size:400
Alignment explanation
Indices: 19149457--19150241 Score: 1031
Period size: 398 Copynumber: 2.0 Consensus size: 400
19149447 CACGTCTACC
* * **
19149457 AAGTTTGGGGCCACAACTCCTTCTGAAAAAATTGTGGAAAATCCCGAACCGTAAAAAGTTTCAAA
1 AAGTTTAGGGCCAAAACTCCTTCTGAAAAAATTGTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
*
19149522 AATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTCAAGGACCAT
66 AATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTCAAGGCTTCAAGGACCAT
* ** * *
19149587 TGTATGAATTTACAACCCATAAAAATGGCTTTGGCATGCAGAAATTTGAAGATGTGCCTAATCCC
131 TGTATGAATTTACAACCCATAAAAATGGCATTGGCATGCAGAAATACGAAGATGTGCCAAAACCC
* * *
19149652 ACCTACCACCCTATCGATCCATGGCTTGCGCATCTTGTCTCTCTGGCCGGC-ATAGTGCCCGCC-
196 ACCTACCACCCTATCAATCCACGGCTTG-G--TC---TC-CCCTGGCCGGCGATAG-G-CCGCCT
* *
19149715 CGCCCGCCCGCCCGCTTGTTTCATC-AGTTGGCTTAGGCATAC-AGAGTTC-ATTCCCAGTCTAA
252 CGCCCGCCCGCCCGCTCGTTTCATCGAGTTGGCTTAGGCATACGAGAGTTCTATTCCCAGGCTAA
* * *
19149777 GATCAGACCAGACTGAGGGTTGC-GGCAACAGTATCGACA-GCACGCAG-AGGGGGA-CCCG-AC
317 GATCAGACCAGACTGAGGGTTACGGGCAACA-AATCGACAGGCACGCAGAAGGGAGATCCCGAAC
19149837 CGATCCCTAACTTGCGCAAT
381 CGATCCCTAACTTGCGCAAT
* **
19149857 AAGTTTAGGGCCAAAACTTCTT-TCGAAAAAATT-TAAAAAATCCCGAACCGTAAAAAGTTTTGA
1 AAGTTTAGGGCCAAAACTCCTTCT-GAAAAAATTGTAAAAAATCCCGAACCGTAAAAAGTTTCAA
* **
19149920 AAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCAC-TCAAGGCTT-AACGGACC
65 AAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTCAAGGCTTCAA-GGACC
** * * *
19149983 ATTGTATGAATTTTTAAGCCATAAAAATGGCATTGGCATGTAGAAATACGAAGATGTTCCAAAAC
129 ATTGTATGAATTTACAACCCATAAAAATGGCATTGGCATGCAGAAATACGAAGATGTGCCAAAAC
* *
19150048 CCACCTACCACCCTATCAATCCACGGCTTGGTCTCCCCTGGCCGGCGTTAGGCCGCCTCGCCCTC
194 CCACCTACCACCCTATCAATCCACGGCTTGGTCTCCCCTGGCCGGCGATAGGCCGCCTCGCCCGC
* * * * *
19150113 CTGCTCGCTCGTTTCATCGGGTTGGCTTAGGCATACGGGAGTTCTATTCCCAGGCTAAGATCGGA
259 CCGCCCGCTCGTTTCATCGAGTTGGCTTAGGCATACGAGAGTTCTATTCCCAGGCTAAGATCAGA
*
19150178 CCAGACTGAGGGTTACGGGCAACAAATCGGCAGGCACGCAGAAGGGAGATCCCGAACCGATCCC
324 CCAGACTGAGGGTTACGGGCAACAAATCGACAGGCACGCAGAAGGGAGATCCCGAACCGATCCC
19150242 CTGGGACTTA
Statistics
Matches: 336, Mismatches: 37, Indels: 26
0.84 0.09 0.07
Matches are distributed among these distances:
390 5 0.01
391 32 0.10
392 21 0.06
393 6 0.02
394 39 0.12
395 17 0.05
396 6 0.02
397 7 0.02
398 105 0.31
399 70 0.21
400 28 0.08
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (400 bp):
AAGTTTAGGGCCAAAACTCCTTCTGAAAAAATTGTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
AATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTCAAGGCTTCAAGGACCAT
TGTATGAATTTACAACCCATAAAAATGGCATTGGCATGCAGAAATACGAAGATGTGCCAAAACCC
ACCTACCACCCTATCAATCCACGGCTTGGTCTCCCCTGGCCGGCGATAGGCCGCCTCGCCCGCCC
GCCCGCTCGTTTCATCGAGTTGGCTTAGGCATACGAGAGTTCTATTCCCAGGCTAAGATCAGACC
AGACTGAGGGTTACGGGCAACAAATCGACAGGCACGCAGAAGGGAGATCCCGAACCGATCCCTAA
CTTGCGCAAT
Found at i:19152116 original size:26 final size:26
Alignment explanation
Indices: 19152087--19152139 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19152077 GTTGCCTTAG
* *
19152087 GCATATGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19152113 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19152139 G
1 G
19152140 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19153590 original size:26 final size:26
Alignment explanation
Indices: 19153554--19153606 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19153544 GTTGACTTAG
19153554 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19153580 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19153606 G
1 G
19153607 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19155346 original size:26 final size:26
Alignment explanation
Indices: 19155316--19155368 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19155306 GTTGACTTAG
* *
19155316 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19155342 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19155368 G
1 G
19155369 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19156253 original size:26 final size:26
Alignment explanation
Indices: 19156217--19156269 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19156207 GTTGACTTAG
*
19156217 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
19156243 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
19156269 G
1 G
19156270 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:19156350 original size:901 final size:894
Alignment explanation
Indices: 19152698--19157870 Score: 6374
Period size: 901 Copynumber: 5.8 Consensus size: 894
19152688 TAGGCATATG
* * * * *
19152698 GAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGGTTGCGGCAACACATGCTGGGCTCGAGG
1 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGC
* * * * * *
19152763 ATGTGTTGGTGTCACATTTTTCTTCA-C-TGG-AGCA-TC---G--T--CGGAGAACCTGACCGG
66 ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATTCGGAGCATCACGGAGAACCTGACCTG
* * ** *
19152817 CAGCATTGGGGTTCCGGCGATCCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGAGTGCT
131 CGGTATTGGGGTTCCGATGAT-CGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
19152882 GGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCTAGAACTCACACCCCTTTAAA
195 GGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
19152947 GAGCATTTTAGA-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGAGGACACTTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * **
19153011 TTTCAAATGGTCACAAAATCTTGTACACCTCGACTTTTTAGCTGAATTGTTTTGTGCACACCAAC
325 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-
* * * *
19153076 AAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA
389 AAAAATACAAGGATCATGTCTACCAAGTATGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * *
19153141 TCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACT
454 TCCCGAACCTCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
19153206 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA-TA
519 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-AGCA
* * ***
19153270 GAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTACGCATCTAATCT
583 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * *
19153335 CTCTGGCC-AGCGTAGTGCCCGCCCGCCCGCTTGCCCTCTCGTTTCATCGGTTGGCTTAAGCATA
648 CTCTGGCCGA-TGTAGTG-CCGCCCGCCCGC-CG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATA
*** * ** * * * ** * *
19153399 AAAAGTTCATTCCTAGTCTAAGATTGGACCGGACCAAGGGTTATCGGCAATATGATCGGCAGCAC
709 CGGAGTTCATTCCCAGTCTAAGA-TCAACCGAACCGAGGGTTGT-GGCAGCAAGATCGACAGCAC
* * * * * *
19153464 ACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCTACTGAGCGCCCAC
772 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGCCGACTGAACGCCCGC
** *
19153529 ACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
837 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
* * * *
19153587 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGTTG-GTTACAGCATATACTGGGCTCG-
1 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCG--ACAGCACATGCTGGGCTCGA
* *** * *
19153649 GCATGTGCGGGTGCCATTTTTTTCTTCGTCGTGGCACCATCATCGGAGCATCATCGGAGAACCTG
64 GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCAT--TCGGAGCATCA-CGGAGAACCTG
* * *
19153714 ATC-GACTGTATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
126 ACCTG-CGGTATTGGGGTTCCGATGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATG
* *
19153778 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTCGAGAACTCACA-CCC
189 GGTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
19153842 CTTAAAGAGCATTTGAGATTTTACAGGGTTTGCTGCCAATAGCAATTAAAGTGTCTGAAATGGGG
254 CTTAAAGAGCATTTGAGATTTTACA-GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
19153907 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCA
318 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* ** * * *
19153972 TGCCAAAAAAAATACAACGATCACATCTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
383 TGCC-AAAAAAATACAAGGATCATGTCTACCAAGTATGGGGCCAAAACTCCTTCCGAAAAAATTT
* * *
19154037 TAAAAAATCCCGAACCAT-AAAAAGTTTTGATAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
447 TAAAAAATCCCGAACC-TCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
19154101 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTG
511 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
19154166 GTACGTAGAAATATGAAGATATGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCAT
576 GCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * *
19154231 CCCGTCTCTCTGGCCGACGTAGT---GCCCTCCCG--TCCACTCATTTCGTCGATTGGCTTAGGC
641 CCCGTCTCTCTGGCCGATGTAGTGCCGCCCGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGC
* ** * * * * ** *
19154291 ATACGGAGTTCATTCCCAATCTAAGATTGGACC-AGACTGAGGGTTGCGGTAGCAGGATCGGTAA
706 ATACGGAGTTCATTCCCAGTCTAAGA-TCAACCGA-ACCGAGGGTTGTGGCAGCAAGATCGACAG
* ** * * * * * * * * *
19154355 CACGCAGAAGGGGACCCGGTCGATCCCCAGCTTACGCATCTCACCCCTCTGGCTGGCTGAGCACC
769 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGCCGACTGAACGCC
* * **
19154420 CGCACGCTCGTTTCATTGGTTGACTTAGGCATA-GGAAGTTCATTCCCAGTCTAAGAATATG
834 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG-AGTTCATTCCCAGTCTAAGCATACA
* * * * *
19154481 GAGTTCATTCCCATTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCATATGTTGGGTTC-AGG
1 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGA-G
* * *
19154545 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA-TC---G--T--CGGAGAACCTAACCG
65 CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATTCGGAGCATCACGGAGAACCTGACCT
* *
19154602 GC-G-A-------T-CG--G---GGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
130 GCGGTATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * * *
19154652 GGTATTTGGCCCTTATAGTGGCCCCCTATCCCCCATTAAACCTCGAGAACTCAAATCCCCTTAAA
195 GGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
19154717 AAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACGGGGACACTTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
19154782 TTTCAAATGGTCACAAAATCTTATACA---C---TTTTTAGCTGAATTTTTTTGTGCATGCCAAA
325 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
*
19154841 AAAATACAAGGATCATGTCTACCAAGCT-T-GGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAA
390 AAAATACAAGGATCATGTCTACCAAG-TATGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* *
19154904 TCCCGAA-ATGCAAAAAG-TTTCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
454 TCCCGAACCT-CAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
19154967 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTGGCATGC
518 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA-TTGGCAAGC
*
19155032 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTC
582 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
** * *
19155097 TCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCTCGTCGGCTCGTTTTGTCGGTTGGCTTAGGCATA
647 TCTCTGGCCGATGTAGTGC-CGCCCGCCCGC-CG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * *** * * **
19155162 CGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCTAGGGTAGTAAAAGTAGGATCGGTAGCACG
709 CGGAGTTCATTCCCAGTCTAAGATCA-ACCGAACCGAGGGTTGTGGCAGCAAGATCGACAGCACG
* * * ** *
19155227 TAGAGGGGGACCCGATCGATCCTCGGCTTGCATATCCCTTCC-CTCTGGCCGACTGAACGCCCGC
773 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC-GCCTCTCTGGCCGACTGAACGCCCGC
* *
19155291 AAGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
837 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
* * ** ** * *
19155349 GAGTTCATTCCCAATCTAAGATCGGACCGGATTGAGGGTTATGGCAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGC
* *
19155414 ATGTTCTGGTGCCGCATTTTTCTTCACCGGGGCACCATTCCCGGAGCATCACAGGAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATT--CGGAGCATCAC-GGAGAACCTGAC
* * *
19155479 CTGCGGCATTGGGGTTCCGATGATC-GGGGGCTGGGGGGTGTGCGCACATGATGTACGATGGGTG
128 CTGCGGTATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * *
19155543 CTAGTACTTGGCCCTTATAGTGGCCCCCTATCGCTCATCAAACCTTGAGAACACACACCCCCTTA
193 CTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
19155608 AAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACT
258 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
19155673 TTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTGAATATTTTTATGCATGCCA
323 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
*
19155738 ACAAAAATACAAGGATCACGTCTACCAAGTATGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
388 A-AAAAATACAAGGATCATGTCTACCAAGTATGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * *
19155803 AATCCTGAACCTTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAA
452 AATCCCGAACCTCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * *
19155868 CTTCATGTGGAGGCTCAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGGCATTGGCAAGC
517 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGC
19155933 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
582 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
**
19155998 TCTCTGGCCGATGTAGTGCCTGCATGCCCGTCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATA
647 TCTCTGGCCGATGTAGTGCC-GCCCGCCCG-CCGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATA
*
19156063 CAGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGTGGCAGCAAGATCGACAGCACG
709 CGGAGTTCATTCCCAGTCTAAGATC-AACCGAACCGAGGGTTGTGGCAGCAAGATCGACAGCACG
* * *
19156128 CAAAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGCCGACTGAGCGCCCGCA
773 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGCCGACTGAACGCCCGCA
* *
19156193 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
838 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
* * * * * *
19156250 GAGTTCATTACCAGTCTAAGATCGGATCAGACCGAAGATTGCGACAACATATGCTGGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGC
* * * * *
19156315 TTGTGCTTGTGCCAG-ATGTTTCTTCGTCGGGGCACCA-T-----CA-C-CGGATAACCTGACCT
66 ATGTGCTGGTGCC-GCATTTTTCTTCATCGGGGCACCATTCGGAGCATCACGGAGAACCTGACCT
* * * * *
19156371 GCGGTATTGGGGTTCGGGTGATCGGGGGGGTCGGGTGGGGTGTGCACACATGATGTGCGTTGGGT
130 GCGGTATTGGGGTTCCGATGATC-GGGGGG-CCGG-GGGGTGTGCGCACATGATGTGCGATGGGT
* * *
19156436 GCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTT
192 GCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
19156501 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACAC
257 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
19156566 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
322 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* **
19156631 AAAAAAATACAAGGATGATGTCTACCAAG-ATTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAA
387 AAAAAAATACAAGGATCATGTCTACCAAGTA-TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * * * *
19156695 AAATCCCAAATCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAGCGAGTCGTC-TGTCATGAA
451 AAATCCCGAACCTCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
19156759 ACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-A-
516 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAG
* * * *
19156821 -ATAAATAT-AAGATGTGCATAACCCCACCTAACCACCCTATCGATCC-CGAC-T--GCATCCCG
581 CAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
19156880 T-TCTCT-GTCGA-GTA---ACGCCCGCCCG-CGCCGCTCGCTTTCGTCGGCCTT-GCTTAGGTA
645 TCTCTCTGGCCGATGTAGTGCCGCCCGCCCGCCGCCGCTCG-TTTCGTCGG--TTGGCTTAGGCA
*
19156937 TAC-GAGTTCATT-CCAATCTAAGAT-AA---AACCGA-GGTTGCTGGCAGC-AGCCAT-GACAG
707 TACGGAGTTCATTCCCAGTCTAAGATCAACCGAACCGAGGGTTG-TGGCAGCAAG--ATCGACAG
* * * * * * *
19156993 CACACAGAGGGGGACCCAACCGATCCCTGGTTTGTGCATCCCGACCT-TCTGGCCGGCTGAACAC
769 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCTCTCTGGCCGACTGAACGC
* * *
19157057 TCGTACGCTCGTTTCATGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAGCATACA
833 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
*
19157119 GAGTTCATTCCCAGTCTAAGATCGGATGGGACCGAGGGTTGC-AGCAGCACATGCTGGGCTCGAG
1 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGAG
* *
19157183 CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATTGTCGGAGCGTCACCGGAGAACCTAA
65 CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCA-T-TCGGAGCATCA-CGGAGAACCTGA
* * * *
19157248 CCAGCGATGTTGGGGTTCCGATGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGTGATGG
127 CCTGCGGTATTGGGGTTCCGATGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGG
*
19157313 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
190 GTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
19157378 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAGGTGTCTGAAATGGGGAC
255 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * **
19157443 ACTTTTTTCAAATGGACACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTGTTTTGTGCACA
320 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
19157508 CCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCCAAAACTCCTTCCGAAAAAATTTTA
385 CCAA-AAAAATACAAGGATCATGTCTACCAAGTATGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * * *
19157573 AAAAATCCCGAACCACCAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATG
449 AAAAATCCCGAACCTCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
19157638 AGACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
514 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
19157703 TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCC
579 AGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * * *
19157768 GTCTCTTTGGCCGGTGTAGTGCACGCCCGCCTGCCCACCCGCTCGTTTTGTCAGTTGGCTTAGGG
644 GTCTCTCTGGCCGATGTAGTGC-CGCCCGCCCG-CC-GCCGCTCGTTTCGTCGGTTGGCTTAGGC
* *
19157833 ATACGGAGTTCATTCCCAGTCTAGGATTAGACCGAACC
706 ATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGAACC
19157871 AGACTAAGGG
Statistics
Matches: 3729, Mismatches: 406, Indels: 283
0.84 0.09 0.06
Matches are distributed among these distances:
858 1 0.00
859 97 0.03
860 129 0.03
861 26 0.01
862 28 0.01
864 8 0.00
865 1 0.00
867 1 0.00
868 419 0.11
869 250 0.07
870 5 0.00
871 1 0.00
872 4 0.00
874 19 0.01
875 23 0.01
876 12 0.00
877 10 0.00
878 3 0.00
879 229 0.06
880 143 0.04
881 30 0.01
882 47 0.01
883 6 0.00
884 22 0.01
885 24 0.01
886 23 0.01
887 25 0.01
888 50 0.01
889 61 0.02
890 41 0.01
891 49 0.01
892 36 0.01
893 289 0.08
894 378 0.10
895 97 0.03
896 13 0.00
897 12 0.00
898 17 0.00
899 55 0.01
900 33 0.01
901 439 0.12
902 220 0.06
903 346 0.09
904 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGC
ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATTCGGAGCATCACGGAGAACCTGACCTG
CGGTATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
AAATACAAGGATCATGTCTACCAAGTATGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
CCGAACCTCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGATGTAGTGCCGCCCGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAACCGAACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCAGAGGGG
GACCCGACCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGCCGACTGAACGCCCGCACGCTCGTT
TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
Found at i:19157122 original size:26 final size:26
Alignment explanation
Indices: 19157088--19157138 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19157078 TGACTTAGGT
*
19157088 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
19157114 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
19157139 ATCGGATGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:19158941 original size:729 final size:717
Alignment explanation
Indices: 19157112--19159450 Score: 3132
Period size: 724 Copynumber: 3.2 Consensus size: 717
19157102 CCCAGTCTAA
* * ** * *
19157112 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATGGGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCTGCAGCACATGCTGGG
* * * *
19157177 CTC-GAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATTGTCGGAGCGTCACCGGAG
66 CTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCACCGGAG
*** *
19157241 AACCTAACCAGCGATGTTGGGGTTCCGATGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGT
130 AACCTAACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGT
* *
19157306 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19157371 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAGGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19157436 TGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTGTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * * *
19157501 GTGCACACCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCCAAAACTCCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-GCAAAACTCCTTCTGAAAA
* * ** * *
19157566 AATTTTAAAAAATCCCGAACCACCAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT-TTGAAAAATAGAAAACGAGTCGTCT
*
19157631 TGCCATGAGACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
19157696 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCATGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* * * *
19157761 ACATCCCGTCTCTTTGGCCGGTGTAGTGCACGCCCGCCTGCCCACCCGCTCGTTTTGTCAGTTGG
648 ACATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTTGTCGGTTGG
19157826 CTTAG
713 CTTAG
* * * * * *
19157831 GGATACGGAGTTCATTCCCAGTCTAGGATTAGACCGAACCAGACTAAGGGTTACGGCACCACATG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACC-G----AGGGTTGCTGCAGCACATG
** * * * *
19157896 CTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTC-GCTGGGGCACCATCGTCAGAGCATCGC
61 CTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCACCATCGCCAGAGCATCAC
* * * * *** *
19157960 CGAAGAACCTGACC-GAAGGCATTGGGGTTCTGGTAATCGGGGGGGCCGAGGGGGTGTACGCACA
125 CGGAGAACCTAACCAG-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACA
* * *
19158024 TGATGTGC-ATTGGGTGCTGGTC-TTTGGCCCTTTTATTGGCCCCCTATCTCTCATCAAACCTCG
189 TGATGTGCGA-TGGGTGCTGG-CACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * *
19158087 AGAACTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTATCCATTAAAGT
252 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
19158152 GTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
317 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
19158217 ATTTTTTTGTGCATGCCATCAAAAATACAAGGATCACATCTACCAAGTTTGGGGTCATATCTCCT
382 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCT
* * * *
19158282 TCTGAAAAAATTTAAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAAAAAAT
446 TCTGAAAAAATTT-TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATT-TGAAAAATAGAAAAC
* *
19158347 GAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCAT
509 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* *
19158412 AAAAATGGCATTGGCACGTAGAAATAAGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCC
574 AAAAATGGCATTGGCATGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * *
19158477 ATGACTTGCGCATCACGTCTCTCTAGCCGGTGAAGTGCCCGCCCGCCCGCCCACCCGCCCACCCG
639 ATGGCTTGCACATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCACCCG------C-
19158542 TTCGTTTTGTCGGTTGGCTTAG
697 -TCGTTTTGTCGGTTGGCTTAG
* * *
19158564 GCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGAACCGAGGGTTGCTGTAGCCCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCTGCAGCACATGCTGGG
* ** * * * * * *
19158629 C-CAAAGG-ATGTACTGGTGATGCATTTTTCTTCGTTGGGGCACCTTCACCGGAGCATCATCGGA
66 CTC--AGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCACCGGA
* * *
19158692 GAACCTGA-CTGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGCGGGTGTGCGCACATGA
129 GAACCTAACCAG-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGG-GGGTGTGCGCACATGA
*
19158756 TGTGCGATGGGTGCTAGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
192 TGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
19158821 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
257 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
19158886 AAATGGGGACAATGTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
322 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
19158951 TTTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCTTTCTGA
387 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-AAAACTCCTTCTGA
* *
19159016 AAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAATCG
451 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT-TTGAAAAATAGAAAACGAGTCG
* * *
19159081 TCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTCTGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
19159146 GGCATTGGCATGTAGAAATACGACGATGTGTCTAAACCCACCTACCACCCTATCGATCCATGGCT
580 GGCATTGGCATGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
* * * **** * *
19159211 TGCACATCCCGTCTGTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCTTTTGCTCATTTCGTCGGT
645 TGCACATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTTGTCGGT
19159276 TGGCTTAG
710 TGGCTTAG
* * * *
19159284 GTATACGGAGTTCATTCCCAGTCTAAGATCGGACTG-ACTGAGGGTTG-TGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCT-GCAGCACATGCTGG
* * * *
19159347 GCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCATCGGAG
65 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCACCGGAG
* * * *
19159412 AACATAACCAGCGGCTTTGGGGTTCCGGCGATTGGGGGG
130 AACCTAACCAGCGGCATTGGGGTTCCGACGATCGGGGGG
19159451 TACTTGGCCC
Statistics
Matches: 1410, Mismatches: 176, Indels: 68
0.85 0.11 0.04
Matches are distributed among these distances:
718 3 0.00
719 135 0.10
720 55 0.04
722 1 0.00
723 3 0.00
724 365 0.26
725 213 0.15
727 1 0.00
728 311 0.22
729 262 0.19
730 1 0.00
731 1 0.00
732 1 0.00
733 58 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (717 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCTGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCACCGGAGA
ACCTAACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCTGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCACA
TCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTTGTCGGTTGGCTT
AG
Found at i:19160273 original size:690 final size:692
Alignment explanation
Indices: 19157112--19161424 Score: 3698
Period size: 719 Copynumber: 6.1 Consensus size: 692
19157102 CCCAGTCTAA
* * *** * *
19157112 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATGGGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
19157177 C-TCGAGCATGTGCTGGTGCCGCATTTTTCTTC-ATCGGGGCACCATTGTCGGAGCGTCACCGGA
66 CTTCG-GCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGGCACCATCGCCGGAGCATCACCAGA
** * * *** * *
19157240 GAACCTAACCAGCGATGTTGGGGTTCCGATGATCGGGGGGGCC-GAGGGGGTGTGCGCACATGAT
129 GAACCGGACCGGTGGCATTGGGGTTCCGACGATCGGGAGGGCCAG-GGGGGTGTGCGCACATGAT
* *
19157304 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
* ** * *
19157369 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAGGTGTCTGA
258 CACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCTATTAAAGTGTTTGA
* * * *
19157434 AATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTGTT
322 AATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
** * * *
19157499 TTGTGCACACCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCCAAAACTCCTTCCGAA
387 TTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGACAAAAACTCCTTCCGAA
* * * ** *
19157564 AAAATTTTAAAAAATCCCGAACCACCAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
19157629 CTTGCCATGAGACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG--T--A--T----G--------A--
*
19157694 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
562 --ATT-G-A--TAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTT
* * * * * * * * * * *
19157759 GCACATCCCGTCTCTTTGGCCG-GTGTAGTGCACGCCCGCCTGCCCACCCGCTCGTTTTGTC-AG
621 GCGCATCCCGCCTCTCTGGTCGAG-GTAGTACCCGCTCGCCCGCCCGCCCGCTCATTTCGTCGA-
*
19157822 TTGGCTTAG
684 TTCGCTTAG
* * * *
19157831 GGATACGGAGTTCATTCCCAGTCTAGGATTAGACC-GAACCAGACTAAGGGTTACGGCACCACAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACC-G----AGGGTTACGGCAGCACAT
* * * * *
19157895 GCTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGCTGGGGCACCATCGTCAGAGCATCGC
60 GCTGGGCTTCGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCAC
* ** * *** * *
19157960 C-GAAGAACCTGACCGAAGGCATTGGGGTTCTGGTAATCGGGGGGGCC-GAGGGGGTGTACGCAC
125 CAG-AGAACCGGACCGGTGGCATTGGGGTTCCGACGATCGGGAGGGCCAG-GGGGGTGTGCGCAC
* * *
19158023 ATGATGTGC-ATTGGGTGCTGGT-CTTTGGCCCTTTTATTGGCCCCCTATCTCTCATCAAACCTC
188 ATGATGTGCGA-TGGGTGCTGGTAC-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT
* * *
19158086 GAGAACTCACACC-CCATTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTATCCATTAAA
251 GAGAACTCACACCGCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCTATTAAA
* * *
19158150 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
314 GTGTTTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
** ** * * *
19158215 GAATTTTTTTGTGCATGCCATCAAAAATACAAGGATCACATCTACCAAGTTTGGGGTC-ATATCT
379 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTT-GGGACAAAAACT
* * * * ** *
19158279 CCTTCTGAAAAAATTTAAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAAAA
443 CCTTCCGAAAAAATTT-TAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* *
19158344 AATGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATAAATTTACAAGC
507 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG--T--A--T----G-
*
19158409 CATAAAAATGGCATTGGCACGTAGAAATAAGAAGATGTGCCTAAATCC-ACCTACCACCCTATCG
561 -------A----ATT-G-A--TAGAAATATGAAGATGTGCCTAAA-CCAACCTACCACCCTATCG
* * * * * * * * *
19158473 ATCCATGACTTGCGCATCACGTCTCTCTAGCCG-GTGAAGTGCCCGCCCGCCCGCCCACCCGCCC
610 ATCCACGGCTTGCGCATCCCGCCTCTCTGGTCGAG-GTAGTACCCGCTCGCCCG----CCCG---
* * * * *
19158537 ACCCGTTCGTTTTGTCGGTTGGCTTAG
667 -CCCGCTCATTTCGTCGATTCGCTTAG
* * * * *
19158564 GCATACGGAGTTCATTCCCAGTCTAGGATCAGACC-GAACCGAGGGTTGCTGTAGCCCATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTACGGCAGCACATGCTGG
*** * ** * * * * *
19158628 GCCAAAGG-ATGTACTGGTGATGCATTTTTCTTCGTTGGGGCACCTTCACCGGAGCATCATCGGA
65 G-CTTCGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCAGA
* * ** * *
19158692 GAACCTGACTGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGCGGGTGTGCGCACATGAT
129 GAACCGGACCGGTGGCATTGGGGTTCCGACGATCGGGAGGGCCAGGG-GGGTGTGCGCACATGAT
* * *
19158757 GTGCGATGGGTGCTAGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
* * *
19158822 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
258 CACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCTATTAAAGTGTTTGA
*
19158887 AATGGGGACA-ATGTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
322 AATGGGGACACCT-TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * *
19158951 TTTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCTTTCTGA
386 TTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGACAAAAACTCCTTCCGA
* * * *
19159016 AAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAATCG
451 AAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
19159081 TCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTCTGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG---A--C-C---A-TT----G---T----AT
* * * * * *
19159146 GGCATTGGCATGTAGAAATACGACGATGTGTCTAAACCCACCTACCACCCTATCGATCCATGGCT
560 -GAATT-G-A--TAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCT
* * * * * ****
19159211 TGCACATCCCGTCTGTCTGGCCG-GCGTAGTGCCCGC-CTGCCCGCCCTTTTGCTCATTTCGTCG
620 TGCGCATCCCGCCTCTCTGGTCGAG-GTAGTACCCGCTC-GCCCGCCCGCCCGCTCATTTCGTCG
* *
19159274 GTTGGCTTAG
683 ATTCGCTTAG
* * * * **
19159284 GTATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGACTGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * *
19159348 C-TCGGGCATGTGCTGGTGCTGTATTTTTCTTC-ATCGGGGCACCATCGCCAGAGCATCATCGGA
66 CTTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGGCACCATCGCCGGAGCATCACCAGA
*** * * * * * * * *
19159411 GAACATAACCAGCGGCTTTGGGGTTCCGGCGATTGGG-GGG-TA-----CT-TG-GCCCAT-A--
129 GAACCGGACCGGTGGCATTGGGGTTCCGACGATCGGGAGGGCCAGGGGGGTGTGCGCACATGATG
* * *** * ** * *** **
19159464 T---ATTGG-CCCCCTA--T--CCCTCATCA----AACCTTGAGAACTCAT-ACCCACTT---AA
194 TGCGATGGGTGCTGGTACTTGGCCCTTAT-ATTGGCCCCCT-ATCCCTCATCAAAC-CTTGAGAA
* * * * * * * * **
19159513 ---AGA--GCATT--TGAG-ATTTTACAGGTTTGC-TGTCAG-TAGCCA-T---TA---AAGTGT
256 CTCACACCGCCTTAAAGAGCATTTGAGA-TTTTACAGGTTTGCT-G-CAGTAGCTATTAAAGTGT
* * *
19159561 CTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
318 TTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
19159626 TTTTTTGGGCATGCCAAAAAAAATGCAAGGATCATGTCTACCATGTTTGGGACAAAAACTCCTTC
383 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGACAAAAACTCCTTC
* * *
19159691 CGAACAAATTTTAAAAAAT-TTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAG
448 CGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* * *
19159755 TGGTTTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATT-AT-GAAATATGA
513 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGATAGAAATATGA
* *
19159818 AGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGTCG
578 AGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGTCG
* * * *
19159883 GGGTAGTACCCG-TCTGCCTGCCCGTCCGCTCGTTTCGTCGATTCGCTTAG
643 AGGTAGTACCCGCTC-GCCCGCCCGCCCGCTCATTTCGTCGATTCGCTTAG
* * * * * * *
19159933 GCATATGGAGTTCATTCCCATTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * ** *
19159998 CTTGGGCATGTGCTGGTGTCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTTCGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCAGAGA
**
19160063 ACTTGACCGGTGGCATTGGGGTTCCGACGATCGAGG-GGGCCAGGGGGGTGTGCGCACATGATGT
131 ACCGGACCGGTGGCATTGGGGTTCCGACGATCG-GGAGGGCCAGGGGGGTGTGCGCACATGATGT
* *
19160127 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTTAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
19160192 CACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCGAGTAGCTATTAAAGTGTTTGAAA
260 CACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC-AGTAGCTATTAAAGTGTTTGAAA
*
19160257 TGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
324 TGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
19160322 GTGCATGCCAAAAAAAAAACAAAGATCATGTCTACGAAGTTTGGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGACAAAAACTCCTTCCGAAAA
* * * *
19160387 AATTTTAAAAAATCCTGAACTGTAAAAAGTTTCAAAAATCATGAAAAATGGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
19160452 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTACGAATTTACAAGCCCTAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGG---AC----C--A-TT----G---T----AT-GA
* *
19160517 ATTGGCATGCAGAAATATGAGGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGTCTTGC
562 ATT-G-AT--AGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGC
* * * *
19160582 GCATCCCGTCTCTCTGGTCGATGTAGTGCCCGCTCGCCCGCCCGCCCGCTCATTTCGTCGATTGG
623 GCATCCCGCCTCTCTGGTCGAGGTAGTACCCGCTCGCCCGCCCGCCCGCTCATTTCGTCGATTCG
19160647 CTTAG
688 CTTAG
* *
19160652 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
19160717 CTTCGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCAGAGA
66 CTTCGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCAGAGA
* * ** *
19160782 ACCGGACCGGTGGCATTGGGGTTGCGGCGATCGGGAGGGCTGGGGGGGTGTGCGTACATGATGTG
131 ACCGGACCGGTGGCATTGGGGTTCCGACGATCGGGAGGGCCAGGGGGGTGTGCGCACATGATGTG
* *
19160847 CGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* *
19160912 ACCGCCTTAATGAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCTATTAAAGTGTTTGAAAT
261 ACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCTATTAAAGTGTTTGAAAT
19160977 GGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
19161042 TGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGAACCAAAAA-TCCTTCCAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGA-CAAAAACTCCTTCCGAAAA
* * *
19161106 AATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAGTCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
19161171 TGCCATGAAACTTCACGTGAGGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATAAC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TT----G-------------
*
19161236 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
566 A-T-------AGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGC
** * * * * * * * * *
19161301 GCATCCCATCTCTCTGGTCG-GTGTAGTGCCAGCCCGCCCACCCGACCACTCGTTTCGTCGGTTG
623 GCATCCCGCCTCTCTGGTCGAG-GTAGTACCCGCTCGCCCGCCCGCCCGCTCATTTCGTCGATTC
19161365 GCTTAG
687 GCTTAG
* * * * *
19161371 GCATACGAAGTTCATTCCCAGTCTAAGATCTGATCGGACCGAGGGTTGCGGCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAG
19161425 TAGGATCGGC
Statistics
Matches: 3022, Mismatches: 403, Indels: 338
0.80 0.11 0.09
Matches are distributed among these distances:
649 134 0.04
650 107 0.04
651 7 0.00
652 2 0.00
655 4 0.00
656 2 0.00
657 1 0.00
658 2 0.00
659 5 0.00
660 2 0.00
662 1 0.00
663 1 0.00
665 4 0.00
666 3 0.00
667 2 0.00
668 2 0.00
669 1 0.00
670 6 0.00
671 1 0.00
672 10 0.00
673 5 0.00
674 1 0.00
675 2 0.00
677 72 0.02
678 143 0.05
679 1 0.00
680 4 0.00
681 1 0.00
682 8 0.00
683 11 0.00
684 4 0.00
685 13 0.00
686 7 0.00
687 2 0.00
688 3 0.00
690 144 0.05
691 73 0.02
693 2 0.00
694 2 0.00
695 5 0.00
696 8 0.00
697 2 0.00
698 11 0.00
699 1 0.00
700 2 0.00
701 3 0.00
702 3 0.00
703 4 0.00
705 2 0.00
706 1 0.00
708 2 0.00
709 7 0.00
710 3 0.00
711 1 0.00
712 3 0.00
713 6 0.00
714 1 0.00
716 4 0.00
718 10 0.00
719 892 0.30
720 60 0.02
723 5 0.00
724 361 0.12
725 209 0.07
726 2 0.00
727 3 0.00
728 276 0.09
729 260 0.09
730 4 0.00
731 1 0.00
732 1 0.00
733 62 0.02
734 1 0.00
737 1 0.00
738 2 0.00
740 1 0.00
742 1 0.00
743 3 0.00
745 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (692 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
CTTCGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCAGAGA
ACCGGACCGGTGGCATTGGGGTTCCGACGATCGGGAGGGCCAGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
ACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAGTAGCTATTAAAGTGTTTGAAATG
GGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGACAAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGATAGAAATATGAAGATGTGC
CTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGTCGAGGTAGTA
CCCGCTCGCCCGCCCGCCCGCTCATTTCGTCGATTCGCTTAG
Found at i:19162443 original size:26 final size:26
Alignment explanation
Indices: 19162407--19162459 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19162397 GTTGACTTAG
*
19162407 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19162433 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19162459 G
1 G
19162460 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19162858 original size:903 final size:901
Alignment explanation
Indices: 19161530--19175483 Score: 16408
Period size: 903 Copynumber: 15.8 Consensus size: 901
19161520 GTTGACTTAC
* * * ** *
19161530 GCATATGGACTTCATTCCTAGTCTAAGATCAGACGGGACCGAGGGTTGCGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19161595 ATTGGGCTTGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * ** *
19161660 ACCTGACCGATGGCATTGAGGTTCTAACGATC-GGGGGGCGGGGGGTGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GTGTGCGCACATGATGTG
19161724 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19161789 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAC
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
19161854 GGGGACACTTTTGTCAAATGGTCACAAAATCTTATACACTTCAAGTTTTTAGCTGAAGTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
19161919 TGCATGCCAACAAAACTGCAAGGATCACGTCTACCAAGTTTGGGACCAAAACCCCTTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
19161984 ATTTTAAAAAATCTCAAACCGTGAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTGTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
19162049 GCCCTGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
19162114 TTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * **
19162179 TATCCCGTCTCTCTGGCCGACATAGTGCTCGCCCGCCCGCCCGTCCGCTCGTTTTATCGGTTGGC
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGC
* * *
19162244 TTAGGCATACGGAGTTCATTCCCATTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATC
* ** * * * *
19162309 GGTAGCACGCAGAGAAGGACCCAGCCGATCCCTGGCTTGAGCATCCCGCCCCTCTGGCCGACTGA
778 GGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
19162374 ACGCCTGCACGCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19162433 GCATACAGAGTTCATTCCCTGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCACATGCTGGG
* * * **
19162498 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGTACCATCATCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * * *
19162563 ACCTGACCGACGACATTAGGGTTCCAACGATTGGGGGGGTCGGGGGGTGTGCGCACATGATGTGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
19162628 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACCCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19162693 TCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
19162758 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGCTTTTAGTTGAATTGTTTTGC
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
19162823 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTGGTCAAAACTCCTTCTGAAAATA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
19162888 TTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
19162953 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
19163018 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGACCCACGGCTTGCGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
19163083 ATCCCGTCTCTCTAGCCGTA-GTGGTGCCCGCCCGCCCACTCGCCCGCTCGTTTCGTCGATTGGC
650 ATCCCGTCTCTCTGGCCG-ACGTAGTGCCCGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGC
* * ***
19163147 TTAGACATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGTAGGATC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATC
** * * * * * * *
19163212 GATAGCACGTAGTGGGGGACCCGGCCGATCCCCGACTTACGCGTCCCACCCC-CTTGGCCAGCTG
778 GGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTC-TGGCCGGCTG
* * * *
19163276 AGTGGCCGTACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19163336 GCATACGGAGTTCATTCTCAGTCTAAGATCAAATTC-GACCGAGGGTTACGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAGA-CGAGGGTTGCGGCAGCACATGCTGG
* * * *
19163400 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGG---CA----C----CATCACCGGAA
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* ** * * * *
19163454 AACCTGATCGGTGACATTAGGGTTCAGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
19163519 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAGACCTCCAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19163584 ACCCCCTTAAAGAGCATTT-ACGATTTTACAAGTTTGCTGGCAGTAGCCATTAAAGTGTCTAAAA
259 ACCCCCTTAAAGAGCATTTGA-GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19163648 TGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAAATTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
19163713 GTGCATGCCAAAAAAAATACAAGTATCACGTCTACCAAGTTTGGAGCCAAAACTCTTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * * *
19163778 AATTTT-AAAAATCCCAAACCGCAAAAAGTTTTAAAAATCGTGAAATATAGAAAATGAGTCGTCT
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
19163842 TGCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTGTAT-AATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
19163906 ATTGGCATGCAGAAATATGAAGATGTGCCTCAACCCACCAACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** * *
19163971 GCATCCCGTCTCTCT-GCTCGACGTAGT----ACCCG-TC-AAC-CCGCTCATTTCGTCAGTTGG
648 GCATCCCGTCTCTCTGGC-CGACGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGG
*
19164028 C-T-----T----AG----------GT-T-AGA-CAG----GACCGAGGGTTGCAGCAGTAGGAT
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGAT
* * * *
19164066 CGACAGCACGCAAAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
777 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
19164131 AGCGCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATATGGAGTTCGTTCCCAGTCTAA
842 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19164191 -TAT-C--AG---A----C---C---G---A-A-C---CGAGGGTTGCGGTAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTGCGGCAGCACATGCTGGGC
* * * * **
19164231 CCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCACCGCCGGAGCATCTTCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAA
* * *
19164296 CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTTTACGCACATGATGTGCG
131 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
**
19164361 ATGGGTGCTGGTTTTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
19164426 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
19164491 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
19164556 CATGCCAAAAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * *
19164621 TTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAATATAGAAAATGAGTCGTCTTGC
456 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
19164686 CATGAAACTTCACGTGAAGGCTTCAA-GGACTATTGTATGAATTTACAAGCCCTAAAAATGGCAA
521 CATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-A
* * * *
19164750 TTTGCACACAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * * *
19164815 TAACCCGTCTCTTTAGCCGACGTAGTGCACGCCCACCCGCCTGCCTGCTCGTTTCGTCGGTTGGA
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCC-GCTCGTTTCGTCGGTTGGC
** *
19164880 TTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGAGCAGACCGAGGGTTGCGGCAGTAGGATC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATC
* * * * ** *
19164945 GACAGCACGTAGA-GGGGACCCGACCAATCCCCGGCTTGCGCATCTTGCCCCTCTAGCCGGCTGA
778 GGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
** *
19165009 GCGCCCATACACTCGTTTCGT-GG--G--TT--G----C----TT-ATTCCCAGTCTAA
843 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19165052 GCATACGGAGTTCATTCCTAGTCTAAGAACAGA-CAGGATCGATGGTTGTGGCAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GA-CGAGGGTTGCGGCAGCACATGCTGG
* * * *
19165116 GCTTGGCCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * * *
19165181 AACCTGACCGACGACATTGGGGTTCCGACGATCGAGGGGGTCGGGGACGGTGTGCGTACTTGATG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG--GGTGTGCGCACATGATG
* *
19165246 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTTGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
19165311 ACACCCCCTTAAAGAGTATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
19165376 ATGGGGACACCTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGTATTTTTG
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
19165441 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCCTCTGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
19165506 AAATTTTAAAAAATCTCGATCTGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAATGAGTCGTC
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT-
* * * * *
19165571 CTGGCCATTAAACTTCGACCGTGAAGGCTTAAAGGACCCGTTGTGATGAA-TTACAAGCCATACA
516 CTTGCCATGAAACTTC-A-CGTGAAGGCTTAAGGGA-CCATTGT-ATGAATTTACAAGCCATAAA
* ** * * *
19165635 AATGGCATTGGTACTTAGAAATATGAAGATGAGCCTATACCCACCT--CACGCAGTATCGATCCA
577 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC-C-CTATCGATCCA
** * * *
19165698 C-GC-TGCGCATCTTGGCTCTCT---CGACGT-G-G-CCG-CTG--CGTCCGCCG--C-TTTCTG
640 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTC-G
* * *
19165749 TCGGTTGGCTTA-G-ATAC--AGTTCATTCTCAGTCTAAGATCAGA-CAAACCGAGGGTTGGGGC
704 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGC
* ** ** * *
19165809 AGAAAAAT-GGCA-CA-GCA-A-GGGGA-CC-TACGAT-CCC-G-TATGTGCATCTCG-CCCTCT
769 AGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCT-TGCGCATCCCGCCCCTCT
* ** *
19165863 AGCCGATTGAGCGCCC-CAC-ATCCGTTT-GTGGGTTGACTTA-GCATA---A----A-----AG
833 GGCCGGCTGAGCGCCCGCACGCT-CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
19165912 --T--
897 TCTAA
19165913 ---T-C--A-TT-A----CAGTCTAAGATCAGACCAGACTGAGGG-TGCGGCAGCACTATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGCAGCAC-ATGCTGG
* ** * * * *
19165965 GCTCAGGCATGTGCTGGTGCCATATTTTTCTTC-ACTGAGGCATCATCGTCGGAGCATCGCCGGA
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCACCGGA
** * *
19166029 GAACCTGACCGACGTTATTGGGGTTTCGACGATCGGGGGGGTCGGGAGGGTGTGCGCACATGATG
128 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGTGTGCGCACATGATG
*
19166094 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAG-ACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* **
19166157 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCCACCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
19166222 GTGGGGACACTTTTTTCAAATGGTCTCATAATCTTGGACACTTCAAGTTTTTAGCTGAA-TTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
19166286 TGTGCATGCCAACAAAAATACAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCGTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
** * **
19166351 AAATTTTAAAAAATCTCTTACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
19166416 TTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19166481 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT-
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
19166545 -GCATCCC-TCTCTCT-GCTG-CGTAGT----GCCCACCCGCCC-CTGCTCGTTTCGTCGATT-G
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGG
* * ** *
19166600 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAGACCAGA-CGA-GGTTACCACAGCAGGA
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACCGAGGGTTGCGGCAGTAGGA
** *
19166663 TCTGGCAGTGCGC--AGGGGGACCC-G-CGATCCCCGAGCTTGCGCATCTCGCCCCTCTTGGCC-
776 TC-GGCAGCACGCAGAGGGGGACCCGGCCGATCCCCG-GCTTGCGCATCCCGCCCCTC-TGGCCG
* * *
19166723 GCTTGAGCGACTCGTGCACGCTC-ATTCGTGGGTTAACTTAGGCATACGGAGTTCATT-CCAGTC
838 GC-TGAGCG-C-C-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
19166786 TAA
899 TAA
* *
19166789 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCAGGGTTGCGGCAGCACATGCTGGCC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTGCGGCAGCACATGCTGGGC
* * ** * * *
19166853 TCGAGCATGTGCTGGTGCCTGTACTTTTTCTTCACCGGTGCACCATC-TC-GCGCA-CAACTGGA
66 TCGGGCATGTGCTGGTGCC-GCA-TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-ACCGGA
* * * * * *
19166915 GAACCTGACCGACGGCATTGGGGTTCTG-TGATCAGGGGGACCGAGGGGG-GTGCACACATGATA
128 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATG
* *
19166978 TGC-AT-GGTG-TGGTACTTGGCCCTTATATTGGCCCCATATCCCTTATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
19167040 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTGCCAGCAGCTATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
19167105 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
19167170 TGTGCATGCCGACAAAAATACAAGGATCACGTCTACCAAG-TTGGAGCCAAAACTCCTTTCGAGA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
** * *
19167234 AAATTTTAAAAAATCTCGAATTGCAAAAAGCTTT-GAAAATCGTGAAAAATAGAAAACGAGTCGT
452 AAATTTTAAAAAATCTCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
19167298 CTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTAGAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
19167363 GCCTTGGCATGCAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCTCGGCTT
581 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *** ** * ** * * *
19167428 GCGCATCTCGTCTCTCTGGCCGGCGCAGTGAGGGGTCACCCATCCGTCGCTCGTTTTGTCTGTTG
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTG
* * * **
19167493 GCTTAGGCATACGGAGTTCATTCCCTA-TCTAAGATCAGACTAAACTGAGGGTTATGGCAGTAGG
711 GCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGG
* * ** * * ** * * *
19167557 ATCGACAGCATGTTGAAGGGGACCCGGTCGATCCTTGGCTTGCGCATCCCACCCCTTTGGCCGGT
775 ATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * * * *
19167622 TGAGCTCCCGTACGCTTGTTTCATGGGTTAACTTAGGCATATGGAGTTCATTCCCAGTCTAG
840 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
19167684 GCATACGGAGTTCATTCGCAGTCTAAGATCGGATCGGATCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** *
19167749 CTCGAGCATGTGCTGGAGCCACATTTTTCTTCATCGAGGCACCATCACCGGAGCATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * *
19167814 ACCTGACC-AGCGGTATTGGGGTTCTGGCGATCGGGGGGCCCGGGGTGGTGTGTGCACATGATGT
130 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGT
* *
19167878 GCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
19167943 CACCCCCTTAAAGAGCATTTGAGATTTTATAGG-TT--TG-C--T-G-C----------C---AA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
19167987 TGGGGACACTATTTTCAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTAAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
19168052 GTGCAAGCCAA-AAAAATTACAAGGATCATGTCTGCCAAGTTTGGGGCCAAAACTCCTTCCGAAA
388 GTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** *
19168116 AAATTTTAAAAAATTTGGAACCACAGAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
19168181 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
19168246 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGACTGG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * ** * * *
19168311 CGCTTCCCATCTCTCTGGCTGGTGTAGTGCCCGCCCGCTCGCCCGCCTGCTCATTTCATCGGTTG
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCC-GCTCGTTTCGTCGGTTG
* * * * *
19168376 CCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACC-GAACCGAGGG-TACGACAGTAGG
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGTAGG
* ** * ** * *
19168439 ATCGGCAGCAAGCAGAGGGGGACCCAACCGATCCCCGACTTGCGCATTTCGCCCCTCTAGCCGGT
775 ATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
19168504 TGAGCGCCCGTACGCTCGGTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
19168566 G-AT-C-G-G---------A--C------CAGA-C---CGAGGGTTACGGCAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * *
19168606 TCGGGCATGTGGTGGTGCCGTATTTTT-TTTG-CTGGGGCACCATCGCCAGAGCATCAGCGGAGA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * *
19168669 ACCTGATCGACGGCATTAGGGTTCCGACGATCGAGGGGGCTGGAGAGGGTGTGCACACATGATGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-G-GGGTGTGCGCACATGATGT
* * * *
19168734 GCGATGGGTACTGGTATTTGGCCCTTTTATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19168799 CACCGCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19168864 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
19168929 GGGCATGCCAACAAAAATACAAGGATCACGTCAACCAATTTTGGGGGCAAAACTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
19168994 AATTTTAAAAGAA-CTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTC
453 AATTTTAAAA-AATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
19169058 TTTCCATGAAACTTTACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19169123 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCATGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
19169188 CGCATCCCATCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTG
* * ** * * *
19169253 GGTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGTCCGAGGGTTGCGGTAGCAGGA
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGA
* * * * * **
19169318 TTGGCAGCACGTAGAGGGGGACCTGACCGATCCCCGCCTTGCGCATCCCGCCCCTCTGGTTGGCT
776 TCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
19169383 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTGA
841 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
19169444 GCACACAGAGTTCATTCCCAGTCTAAGATC-GAATCGGACCGAGGGTTGTGGCAGCGCA--CTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGA-CGAGGGTTGCGGCAGCACATGCTGG
* * * * **
19169506 CCTCAGGCATGTGCCGGTGCTGCATTTTTCTTCACCGGGGCACCATCGCCGAAGCATCGCCCGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---G--TCG---GAG
* * * * * * *
19169571 CATCGCCAGAGAACCTGACTGGCGGCATTGGGGATCCGACGATCGGGTGGGCCAGGGGGTGTGCG
118 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCG
*
19169636 CACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
183 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
19169701 CGAGAACTCACA-CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
248 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
19169765 GTGTTTGAAATGGGGACACCTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCT
313 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * **
19169830 GTATTTTTTTGTGCATACCAAAAAAAATACAAGGATCACGGCTACCAAGTTTGGGGCCAAAAAAC
378 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * * * *
19169895 CTTTCAAAAAAATTTTAAAAAATCCCGATCCGTAAAAAGTCTCAAAAATCGTAAAAAATAGAAAA
443 CTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
*
19169960 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCA
508 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * * *
19170025 TAAAAATGGTATTGGCACTCAGAAATATGAAGATGAGCCTATACCCAGCTACCACCCTATCGATC
573 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * *
19170090 CACAGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCTCGCCCGCCCGTCCGCTTGCTCCTTT
638 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGC-CGCTCGTTT
* ** * * *
19170155 TGTCGGTTGGCTTAGGCATACCTAGTTCATTCCTAGTCTAAGATCAAACC-GAACCGAGGGTTGT
702 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGC
* * * * * *
19170219 GGTAGAAGGATCGGCAACACGGAGAGGGGGACCCGGCTGATCCCTGGCTTGCGCATCCCGCCCCT
766 GGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * * *
19170284 CTAGCTGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGATTTAGGCATACAGAGTTCATTCCCA
831 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
19170349 GTCTAA
896 GTCTAA
* *
19170355 G-AT-C-G-G---A----C---C---G----GACTA-A--A-GGTTGCAGCAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTGCGGCAGCACATGCTGGGC
*
19170395 TCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAA
** ** * * *
19170460 CCTGACTTACGTTATTGGGGTTTCGACGATC--GGGGGTCGGGAAGGTGTGCGCACATGATGTGC
131 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGTGTGCGCACATGATGTGC
* * * *
19170523 GATTGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACTTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
19170588 CCCCCTCAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
19170653 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
19170718 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC-AAAATA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-A
* * *
19170782 ATTTTAAAAAATCCCAAACCGTAAAATGTTTCAAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTC-AAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
19170847 TGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
19170912 CTTGGCATGTAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
19170977 GCATCCCGTCTCTCTTGG-CGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTTGGTTG
648 GCATCCCGTCTCTC-TGGCCGACGTAGTGCCCGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTG
* * * * * * * *
19171041 GCTTAGGCATATGGAGTTCATTCCCAGTCTAATATTAGACCGGACTGAGGGTTGTGGTAGCAGGA
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGA
* * * * * *
19171106 TCGGTAGCACGCAGAGGGGGATCCAGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTAGCAGGCT
776 TCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* ** *
19171171 AAGCGCCCGCACATTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ***
19171232 GCATACAGAGCTCATTCCTAGTCTAAGATCGGATGGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCACATGCTGGG
* * ** **
19171297 CTTGGGCATGTGCTAGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* *
19171362 ACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGAGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTG
* *
19171427 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCTAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19171492 AGCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
19171557 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
19171622 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** ** *** * *
19171687 ATTTT-AAAAATCCCGAACCACAAAAAGTTTTGAAAATCACAAAAAATATAAAACGAGTCATCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
19171751 GCCATGAAACTTCATGTAAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
19171816 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * ** * *
19171881 CATCTCGTCTCTCTGGCCGACGTAGTACCCGCTCGCTCG---TTCGCTCGTTTCGTTGATTGGCT
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCT
* * * * *
19171943 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCAGCAAG-AGGATC
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGC-AGTAGGATC
* * * * * * *
19172007 GACAGCACACAGAGGGGGACCCGGCTGATCCTCGGCTTGTGCATCTCGCCTCTCTGGCCGGCTGA
778 GGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * *
19172072 GAGCCCGCAC-ATCCGTTTCGTGGGTTGACTTAGGCATACTGAGTTCATTTCCAATCTAA
843 GCGCCCGCACGCT-CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19172131 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGACAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCACATGCTGGG
*
19172196 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA---TC---G-----CCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * ** * *
19172250 ATCTAACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCGAGCGGGGGGCGTGTGCACATGAT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-C---CGGGGGGTGTGCGCACATGAT
*
19172315 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * ** * *
19172380 CACACCCCCTTAAAAAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGGTATTAAAGTGTTTAA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
19172445 AATGGGGACAC-TTTTTCAAATAGTCACAAAATCTTGTACAATTCAAGTTTTTAACTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * ** *
19172509 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAA-TGTGGGGCCAAAATTGTTTTCGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
*
19172573 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCTAAAATCGTGAAAAATAGAAAACGAGTCGT
451 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
19172638 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * * *
19172703 GCATTGGCATGCAGAATTATGAAGATGAGCCGAAAGCCACCTACCACCCTATCGATTCACGCCTT
581 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
19172768 GCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCTGCCCG--CTCC-CTCATTTCGTCGGTTG
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTG
* * * *
19172830 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAGCAGGA
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGA
* * * ** * * *
19172895 TCGACAGTACGCAGAGAGGGACCCGATCAATCCCCAGCTTGCGCATCCCGCCCCTCTAGCCGGCT
776 TCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
19172960 GAGCGCCCGCACGCTCGTTTTGTTGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
841 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
19173021 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACC-GAACCGTGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-A-CGAGGGTTGCGGCAGCACATGCTGG
* * * *
19173085 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTC-GGGCACCATCGCCGGAGCATCGCTGGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * *
19173149 AACCTGACTGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCTCACATGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
19173213 CGATGGTTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTCAAGAAACTCA
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG-AACTCA
*
19173278 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
19173343 TGGGGACACTTTTTTCAAATGGTCACAAAATCTT-TCACACTTCGAGTTTTTAGCTGAATTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT-ACACTTCGAGTTTTTAGCTGAATTTTTT
* **
19173407 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAAACCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** * *
19173472 AAATTTTAAAAAATCTCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTC
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
19173537 TTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAAGTTACAAGGCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
19173602 CATTGGAACACAGAAAATATGAAAATATGCCTAAACCCACCCACCACCCTATCGATCCACGGCTT
582 CATTGGCACGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ** *
19173667 GCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCTTGCCCGCCCGCCCGCTCGTTTCATCGGTT
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTT
* ** * * ** * *
19173732 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTATGGCTGGAGG
710 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGG
* * * * * ** * *
19173797 ATCGACAGCACGTAGAGGAGGAACCGGCCGATCCCTGGCTTGCGCATCTTGCCTCTCTAGCCGGC
775 ATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
19173862 TGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAGTCCCAGTCTAA
840 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19173924 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAAGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * *
19173989 CTCAGGCATTTGCTGGTGTCGCATTTTTCTTTGCCGAGACACCATCGTCAGAGCATCATCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
19174054 ACCTGACCGACGGCATTGGGGTTCCAACGAT-TGGGGGTCC-GGGGG-GTGCGCACAAGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
19174116 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
19174181 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * **
19174246 GGAACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGATTTTTTATTTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
19174311 GCATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTCT-GGGCCAAAACTCCAT-C-TAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT-TGGGGCCAAAACTCCTTCCGAAAAA
*
19174373 A-TTT-AAAAATC-C-AA-CG--AAAAG-TT-AAAAATCATG--AAA-A-AAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
19174425 GCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
19174490 TTGGAACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
19174555 CATCCCG-CTCTCTGGCCGGCGTAGT--------GCCCG--C-CCGCT-TTTTCGTCGGTTGGCT
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCT
* * * * * **
19174607 TAGGCATACGAAGTTCATTCCCAGTCTAAGAACAGA-CAGACCGAGGGTCGCAGTAGTAGGATTA
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCG
* * ** * * * *
19174671 GCAGCACGCAGA-GGGGATCCGACCGATCCCCGGCTTATG-AT-CCGCCCCT-TTGCCGACTAAA
779 GCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
19174732 AGCCCGCATGCTC-ATTCGATGGGTTGACTTAGGCATACGGAGTTCATTCTCATTCTAA
844 CGCCCGCACGCTCGTTTCG-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19174790 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19174855 CTCGAGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
**
19174920 ACCTGACCGGACGGCATTGGGGTTCCTG-CGATCGGGTAGGCCGGGGGGGGTGTGCGCACATGAT
130 ACCTGACC-GACGGCATTGGGGTTCC-GACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGAT
* * * *
19174984 GTGTGAT-GGTGCTGGTGCCTTGGTCCTTATATTGGGCCCCCTATCCCTCATCAAAACCTTGAGA
191 GTGCGATGGGTGCTGGT-ACTTGGCCCTTATATT-GGCCCCCTATCCCTCATC-AAACCTCGAGA
*
19175048 ACTCAGACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTC
253 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
19175112 TGAAATGGGGA-ACTTTTTTCAAATGGTCACAAAATC-TGTAACACTGCGAGTTTTTGGCTGAAT
318 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT-ACACTTCGAGTTTTTAGCTGAAT
* * *
19175175 TTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTA-CATGTTTGGGGCCAAAACTTCTTC
382 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * *
19175239 CGAAAAAAATTT-AAAAATC-CTGAATCAC-AAAAAATTTTCAAAAATCGTGAAAAATAGAAAAA
447 CGAAAAAATTTTAAAAAATCTC-GAA-C-CGTAAAAAGTTTCAAAAATCGTGAAAAATAG-AAAA
* * *
19175301 CGACTCGTCTTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCA
508 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
** *
19175366 TAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATC
573 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * *
19175431 CACGGCTTGTGCATCCCGTCTCTCTAGCAGACGTAGTG-CC-CCCGCCCGACCGC
638 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGC
19175484 TTTTTTGGGG
Statistics
Matches: 11221, Mismatches: 1407, Indels: 852
0.83 0.10 0.06
Matches are distributed among these distances:
829 57 0.01
832 3 0.00
834 1 0.00
835 1 0.00
836 1 0.00
838 1 0.00
840 321 0.03
841 172 0.02
842 45 0.00
843 93 0.01
844 25 0.00
845 127 0.01
846 114 0.01
847 56 0.00
848 68 0.01
849 127 0.01
850 6 0.00
851 29 0.00
852 6 0.00
853 2 0.00
854 16 0.00
855 194 0.02
856 164 0.01
857 6 0.00
858 2 0.00
859 6 0.00
860 21 0.00
861 24 0.00
862 10 0.00
863 12 0.00
864 23 0.00
865 19 0.00
866 177 0.02
867 33 0.00
868 12 0.00
869 28 0.00
870 32 0.00
871 86 0.01
872 128 0.01
873 75 0.01
874 104 0.01
875 85 0.01
876 257 0.02
877 814 0.07
878 187 0.02
879 8 0.00
880 14 0.00
881 131 0.01
882 402 0.04
883 372 0.03
884 87 0.01
885 93 0.01
886 163 0.01
887 336 0.03
888 92 0.01
889 355 0.03
890 691 0.06
891 255 0.02
892 376 0.03
893 50 0.00
894 86 0.01
895 151 0.01
896 105 0.01
897 190 0.02
898 180 0.02
899 379 0.03
900 42 0.00
901 186 0.02
902 185 0.02
903 1436 0.13
904 108 0.01
905 273 0.02
906 6 0.00
907 1 0.00
908 1 0.00
909 2 0.00
910 5 0.00
911 563 0.05
912 80 0.01
913 1 0.00
914 46 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGC
AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19163339 original size:26 final size:26
Alignment explanation
Indices: 19163310--19163362 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19163300 GTTGACTTAG
19163310 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19163336 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19163362 G
1 G
19163363 ATCAAATTCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19166798 original size:25 final size:26
Alignment explanation
Indices: 19166764--19166815 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
19166754 GTTAACTTAG
19166764 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19166789 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19166815 G
1 G
19166816 ATCGACCAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 16 0.62
26 10 0.38
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19167685 original size:26 final size:26
Alignment explanation
Indices: 19167655--19167708 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
19167645 TGGGTTAACT
*
19167655 TAGGCATATGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
*
19167681 TAGGCATACGGAGTTCATTCGCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
19167707 TA
1 TA
19167709 AGATCGGATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:19171246 original size:26 final size:26
Alignment explanation
Indices: 19171206--19171258 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19171196 GTTGACTTAG
* *
19171206 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
*
19171232 GCATACAGAGCTCATTCCTAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
19171258 G
1 G
19171259 ATCGGATGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:19172141 original size:26 final size:26
Alignment explanation
Indices: 19172105--19172157 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19172095 GTTGACTTAG
* *
19172105 GCATACTGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19172131 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19172157 G
1 G
19172158 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19173034 original size:26 final size:26
Alignment explanation
Indices: 19172995--19173047 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19172985 GTTGACTTAG
19172995 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
19173021 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
19173047 G
1 G
19173048 ATTGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:19173934 original size:26 final size:26
Alignment explanation
Indices: 19173898--19173950 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19173888 GTTGACTTAG
19173898 GCATACAGAGTTCAGTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
* *
19173924 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
19173950 G
1 G
19173951 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCCAGTCTAA
Found at i:19174793 original size:26 final size:26
Alignment explanation
Indices: 19174764--19174816 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19174754 GTTGACTTAG
* * *
19174764 GCATACGGAGTTCATTCTCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19174790 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19174816 G
1 G
19174817 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19176494 original size:26 final size:26
Alignment explanation
Indices: 19176464--19176516 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19176454 GTTAACTTAG
*
19176464 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19176490 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19176516 G
1 G
19176517 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19177536 original size:157 final size:159
Alignment explanation
Indices: 19177205--19177552 Score: 475
Period size: 157 Copynumber: 2.2 Consensus size: 159
19177195 CGTCGATTGG
* * *
19177205 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTACGGTAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATGGAGGGTTACGGCAGCAGGAT
* ****
19177270 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTTGCCCCTCTGGCCGACTG
66 CGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCAACCCTCTGGCCGACTG
* * * *
19177335 AGCGCCTGCATGGTCGTTTCGTGGGTTGA
131 AGCACCCGCACGGTCGTTTCATGGGTTGA
* * ** *
19177364 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATGGATGGTTGTGGCAGTAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATGGAGGGTTACGGCAGCAGGAT
* * * * *
19177429 TGGCAGCACGTAG-GGGGGACCCGACTAATCCCCGGCTTGCGC-TCCCAACCCTCTGGTCGATTG
66 CGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCAACCCTCTGGCCGACTG
*
19177492 AGCACCCGTACGGTCGTTTCATGGGTTGA
131 AGCACCCGCACGGTCGTTTCATGGGTTGA
19177521 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
19177553 CATACGGAGT
Statistics
Matches: 165, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
157 70 0.42
158 27 0.16
159 68 0.41
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATGGAGGGTTACGGCAGCAGGAT
CGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCAACCCTCTGGCCGACTG
AGCACCCGCACGGTCGTTTCATGGGTTGA
Found at i:19177556 original size:26 final size:26
Alignment explanation
Indices: 19177526--19177578 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19177516 GTTGACTTAG
19177526 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19177552 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19177578 G
1 G
19177579 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19178336 original size:26 final size:26
Alignment explanation
Indices: 19178286--19178337 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19178276 GTTAACTTAG
* * *
19178286 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19178312 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19178338 TATCGAACTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19179913 original size:26 final size:26
Alignment explanation
Indices: 19179877--19179929 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19179867 GTTGACTTAG
* *
19179877 GCATACGGAGTTCATTGCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19179903 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19179929 G
1 G
19179930 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19181298 original size:4 final size:4
Alignment explanation
Indices: 19181289--19181322 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
19181279 CCGGCATAGT
*
19181289 GCCC GCCC GCCC GCCC GCCC TCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
19181323 TCGTTTCGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.00, C:0.74, G:0.24, T:0.03
Consensus pattern (4 bp):
GCCC
Found at i:19181656 original size:730 final size:720
Alignment explanation
Indices: 19179903--19184328 Score: 3784
Period size: 711 Copynumber: 6.0 Consensus size: 720
19179893 GCCATTCTAA
* * * * *
19179903 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTAAGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * *
19179968 CTCGGGCACGTGCTGGTACCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCCCCGGGGA
66 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * * *
19180033 GCCTGACCGACGACT-TTGGGGTT-TCGGGGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATG
131 ACCTGACCGGCG-GTATTGGGGTTCT-GGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
* * *
19180095 TGCGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCC-TACCCACATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTCGAGAACTC
* *
19180159 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
19180224 ATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTCAGCTGAATTTTTT
19180288 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAA
* * * * * *
19180353 AAACTTTAAAAAATCCCGAACCACAAAAAGTTTCGAATATCGTGAAAAAGAGAAAACGAGTCATC
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
19180418 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
19180483 CATTGGCACACAGAAATATGAAGATGTGCGTAAACCCACCTA-CACCCTATCGATCCACGGCTTG
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
19180547 CGCATCCTGTCTCTCTGGCCGGCATAGT------GCCCG-T-CCGCCCACCCGTTCGTTTCGTCG
646 CGCATCCCGTCTCTCTGGCCGGCATAGTCGGCCCGCCCGCTCCCGCCCGCCCGCTCATTTCGTCG
*
19180604 GTTGGCTTAA
711 GTTGGCTTAG
* ** *
19180614 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * *
19180679 CTCGGGCATGTGCTGGTGCCATATTTTTTTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * * *
19180744 ACCTGACCGGCGGCATTGCGG-TCTTGGCGATCGGGGGGGTCAGGGGGGTGTGCGCACATGGTGT
131 ACCTGACCGGCGGTATTGGGGTTC-TGGCGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGT
* * * * * **
19180808 GTGATGGGGGTTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAATGTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTCGAGAACTCA
* * *
19180873 CACCCCCTTAAAAAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19180938 TGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTCAGCTGAATATTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT-TCAGCTGAATTTTTTT
** * *
19181003 GTGCATGCCAACAAAAATGA-AAGGATCATATCTACCAAGTTTGGGGCCAAAACTGCTTTCAAAA
388 GTGCATGCCAACAAAAAT-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * *
19181067 AAATTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
19181132 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
19181197 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGATTGC
582 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
19181262 GCATCCCGTCTCTCTTGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCTCCCGCCCGCCCGCTCGT
647 GCATCCCGTCTCTCTGGCCGGCATAGT---CG---GCCCGCCCG--CTCCCGCCCGCCCGCTCAT
*
19181327 TTCGTCAGTTGGCTTAG
704 TTCGTCGGTTGGCTTAG
* * * **
19181344 GCATACGGAGTTCATTCCCAATCTACGATCGAACTGAACCGAGGGTTACGGTGGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTACGGCAGCACATGCTGGG
* * *
19181409 CTCGAGCATGTGCTGGTGCTGTATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCATCGGAGA
66 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGA
*
19181474 ACCTGACTGGCGGTATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGTATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
19181539 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCCTTTTCCTCATCAAGCCTCGAGAACTCAC
196 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTTTCCCTCATCAAACCTCGAGAACTCAC
* * *
19181604 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19181669 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGCTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTCAGCTGAATTTTTTTG
*
19181734 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
* * * *
19181799 ATTTCAAAAAATCCTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
19181864 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
19181929 TTGCCACACAGAAATATGAAGATGTGCCTAAACCCAACTACCATCCTATCGATCCACTGCTTGCG
583 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** * * *
19181994 CATCACGTCTCTCTAGCCAACGTAGT--GCCCGCCCGCCCGCCCGCCCG-CCGTCTCATTTCATC
648 CATCCCGTCTCTCTGGCCGGCATAGTCGGCCCGCCCG--CTCCCGCCCGCCCG-CTCATTTCGTC
19182056 GGTTGGCTTAG
710 GGTTGGCTTAG
* * * * * * * * * *
19182067 GCATA-GGAGTTCATTGCTAGTCTACGATCGGAC-CAGACCAAGGGGTGCGACAGTAGGATCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGA-ACCGAGGGTTACGGCAGCA-CAT--GC
*** * *** ** ** *** *
19182130 TACACGCAGAGGGGGACCTGGTTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCC
62 TGGGCTC-GAGCATGTGCTGG-TG---C-CGTATTTTTC-T-TCG---C-C-GG--GGC--A-CC
** ** ** * * * * * *** *
19182195 ATCGCACGTTTGTTTCATGGGTTG-ACTTTGGCATACGGAGTTCATTCCCAG-TCTAAGC-ATAC
109 ATCGC-CG-GAGCATCACCGG-AGAAC-CT-G-A-CCGGCGGT-ATT-GGGGTTCT-GGCGAT-C
* ** *** ** * * * *
19182257 -GGAGTTCTTTCCCAGTCTAAGATTG-GACCAGACCGAGGGTTGC-A-GGAGCACATGCTGG-GC
163 GGGGGGGC---CGGGGGGT--G--TGCG--CACA-TGA-TG-TGCGATGG-G----TGCTGGTAC
* * * * ** ** * * ** * ** * * * * *
19182317 TCGG-GCATGTGCTGGTGCCATATT---T-TTC-TTCGTCG-GGGCAC-CATCGCC--AGAGCAT
211 TTGGCCCTTATATTGGCCCCCT-TTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG-AG
*** * *** * * * * *
19182372 CACCGGAGAACCTGGCCGATGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGCACACA-
274 CATTTGAG-A-TTTTAC-A-GG--TT-TGCTGCC-A-G-T--A----GCC-----AT-TA-A-AG
* ** ** * * * *** ** * *
19182436 TGATGTGCGATGGGTG-CTGGTACTTGGCCCTT-ATATTGGCCATCTATCCCTCATCAAACCTCG
315 TG-TCTGAAATGGG-GAC----ACTT---TTTTCA-AATGGTCA-CAAAATCTTGT-ACACTTCG
* * ** *
19182499 AGAACTCACACCCCTTAAAGTGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCC-ATTAAAGT
368 AG---T--------TT-CA--GC---TGA-ATTTT-----TTT-GTG-CA-T-GCCAACAAAAAT
* * * ** * * ** *
19182563 GTCTGAAATGGGGA-CACTTTTTTCAA--AT-GGTCACAAAATCTTGTATCCTTCTGGACAAATT
406 -AC---AA---GGATCACGTCTACCAAGTTTGGGGC-CAAAA-C-----TCCTTC-CAAAAAATT
* * * * * *
19182624 TTCAAAAAT-TCAAACCGCAAAAAGTTTCAAAAATTGTGAAAAA-ATGAAAATGGGTCGTCTTGC
456 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA-GAAAACGAGTCGTCTTGC
* *
19182687 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAGT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * *
19182752 GGCACGCAAAAATATGAAGATGTGCCTAAAACCACCTACCATCCTATCGATCCACGGCTTGTGCA
585 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
19182817 TCCCGTCTCTCTGGTCGGCGTAGT------------TCCTGCCCGCCCGTTCATTTCGTCGGTTG
650 TCCCGTCTCTCTGGCCGGCATAGTCGGCCCGCCCGCTCCCGCCCGCCCGCTCATTTCGTCGGTTG
19182870 GCTTAG
715 GCTTAG
* * * * *
19182876 GTATACGTAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTACGGCAGCACATGCTGGG
* * ** * * ** **
19182941 CTC-AGGCATGTGCTGATGTCACATTTTTCTTCGTCGGGGCACTATCGTTGGAGCATCGTCGGAG
66 CTCGA-GCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAG
* * *
19183005 AACCTGACCGGCGGGATTGGGGTTCCGACGATC--GGGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGTATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
19183068 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAATCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTCGAGAACTCAC
*
19183133 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGA-TAAAGTGTCTAAAA
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAA
* **
19183197 TGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTCAGCTGAATTTTTTT
* * * * *
19183262 GTCCATGCCAAAAAAAATACAAGGATCACGTCTATCAAGTTTTGGGCCAAAAATCCTTCCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA
* * *
19183327 AATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * **
19183392 TGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATCTC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
19183457 TTTGGCACATAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGGTCCACGGCTTAC
582 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
19183522 GCATCCCGTCTCTCTGGTCGGAATAGT----------G--CCCG-CCGCCTGCTCATTTCATCGG
647 GCATCCCGTCTCTCTGGCCGGCATAGTCGGCCCGCCCGCTCCCGCCCGCCCGCTCATTTCGTCGG
* *
19183574 TCGGCATAG
712 TTGGCTTAG
* * ** *
19183583 GCATACGGAGCTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGAG-AGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTACG-GCAGCACATGCTGG
* * * * *
19183647 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCACCAGAG
65 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAG
* * *
19183712 AACCTAACCGGCGGCATTGGGGTTCCT-ACGATCGGGGGGGCCGGAGGGGGTGTGCGCACATGAT
130 AACCTGACCGGCGGTATTGGGGTT-CTGGCGATCGGGGGGGCC-G-GGGGGTGTGCGCACATGAT
* * * *
19183776 GTGCGATGGGTGCTGGTGCTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACAT-GAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTCGAGAACT
* * * *
19183840 CATACCCTCTTAAAGAGCATTCGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
19183905 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTCTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTC-AGCTGAATTTTT
* * *
19183970 TTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCACGTTTGGGGCCAAAACTCCTTCTGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAA
* ** * * * *
19184035 AAAATTTAAAAAAATCTTGAACCGCAAAAAGATTCCAAAATCGTGAGAAATAGAAAAAAGAGTCG
450 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG-AAAACGAGTCG
*
19184100 TTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*** *
19184165 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCT
579 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** *
19184230 TGCGCATCCCGTCTCTCTGGGCGGCGTAGT--GCGTGCCCG--CCCGCCCGCCCGCTCGTTTCGT
644 TGCGCATCCCGTCTCTCTGGCCGGCATAGTCGGCCCGCCCGCTCCCGCCCGCCCGCTCATTTCGT
19184291 CGGTTGGCTTAG
709 CGGTTGGCTTAG
* * * *
19184303 GCGTACAGAGCTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19184329 AATCAGATCG
Statistics
Matches: 2972, Mismatches: 528, Indels: 421
0.76 0.13 0.11
Matches are distributed among these distances:
707 177 0.06
708 185 0.06
709 12 0.00
710 226 0.08
711 375 0.13
712 63 0.02
713 305 0.10
714 111 0.04
715 1 0.00
716 4 0.00
717 6 0.00
718 2 0.00
719 6 0.00
720 50 0.02
721 1 0.00
722 39 0.01
723 46 0.02
725 10 0.00
726 16 0.01
727 2 0.00
729 54 0.02
730 374 0.13
731 216 0.07
732 3 0.00
733 2 0.00
736 1 0.00
737 1 0.00
738 1 0.00
740 4 0.00
742 9 0.00
743 12 0.00
744 9 0.00
745 10 0.00
746 2 0.00
747 5 0.00
748 1 0.00
749 4 0.00
750 13 0.00
751 13 0.00
752 3 0.00
753 7 0.00
754 6 0.00
755 7 0.00
756 6 0.00
757 7 0.00
758 7 0.00
759 8 0.00
760 5 0.00
761 9 0.00
762 9 0.00
763 6 0.00
764 6 0.00
765 1 0.00
766 8 0.00
767 6 0.00
768 13 0.00
769 5 0.00
770 7 0.00
771 8 0.00
772 7 0.00
773 7 0.00
774 7 0.00
775 8 0.00
776 4 0.00
777 6 0.00
778 9 0.00
779 1 0.00
780 3 0.00
781 3 0.00
782 11 0.00
783 4 0.00
784 2 0.00
785 9 0.00
786 7 0.00
787 15 0.01
788 1 0.00
789 7 0.00
790 1 0.00
792 3 0.00
794 2 0.00
795 1 0.00
797 2 0.00
798 1 0.00
799 2 0.00
800 3 0.00
801 4 0.00
803 3 0.00
804 5 0.00
805 3 0.00
806 5 0.00
807 5 0.00
809 36 0.01
810 43 0.01
811 2 0.00
812 6 0.00
813 4 0.00
815 3 0.00
816 8 0.00
817 1 0.00
818 7 0.00
819 3 0.00
820 1 0.00
821 183 0.06
822 19 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (720 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTACGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGA
ACCTGACCGGCGGTATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCATAGTCGGCCCGCCCGCTCCCGCCCGCCCGCTCATTTCGTCGGTTGG
CTTAG
Found at i:19182255 original size:26 final size:26
Alignment explanation
Indices: 19182225--19182277 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19182215 GTTGACTTTG
19182225 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19182251 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19182277 G
1 G
19182278 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19185382 original size:26 final size:26
Alignment explanation
Indices: 19185343--19185402 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
19185333 GTTGACTCAG
* *
19185343 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGACTTCATTCCCAGTCTAA
19185369 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
19185395 G-AT-CGGAC
1 GCATACGGAC
19185403 CGAACCACCA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 25 0.78
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:19186270 original size:26 final size:26
Alignment explanation
Indices: 19186234--19186286 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19186224 GTTGACTTAG
* *
19186234 GCATATGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19186260 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19186286 G
1 G
19186287 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19186691 original size:900 final size:893
Alignment explanation
Indices: 19183583--19187911 Score: 5444
Period size: 900 Copynumber: 4.8 Consensus size: 893
19183573 GTCGGCATAG
* * *
19183583 GCATACGGAGCTCATTCCCAGTCTAAGATCGGACC-GAACCGAGGGTTGTGAGAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCG-GAGCACATGCTGG
* * * ** * *
19183647 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCACCAGAG
64 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCATCGGAG
* *
19183712 AACCTAACCGGCGGCATTGGGGTTCCTACGATCGGGGGGGCCGGAGGGGGTGTGCGCACATGATG
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATG
* * *
19183777 TGCGATGGGTGCTGGTGCTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACAT-GAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
19183841 ATACCCTCTTAAAGAGCATTCGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
19183906 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTCTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
19183971 TTTGCATGCCAACAAAAATACAAGGATCACGTCTACCACGTTTGGGGCCAAAACTCCTTCTGAAA
388 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCGAAA
* * * ** * *
19184036 AAATTTAAAAAAATCTTGAACCGCAAAAAGATTCCAAAATCGTGAGAAATAGAAAAAAGAGTCGT
452 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAG-AAAACGAGTCGT
*
19184101 TTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATG
* *
19184166 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTT
580 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
19184231 GCGCATCCCGTCTCTCTGGGCGGCGTAGTGCGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
645 GCGCATCCCGTCTCTCT-GGCAGCGTA----GTGCCCGACCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * * * * *
19184296 GGCTTAGGCGTACAGAGCTCATTCCCAATCTAAAATCAGATCGAGCTGAGGGTTGCGGTAGCAAG
705 GGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGA-CTGAGGGTTGCGGCAGCAGG
* * * * * * * ** *
19184361 ATTGACAGCACGCAGAAGAGGACCCGGTCGATCCTCGGTTTGCACATTCC-G-CCCTTCTGGCTG
769 ATCGGCAGCACGTAGAGGA-GACCC-GACCATCCCCGACTTGCGCA-TCCTGCCCCTT-TGGCTG
*
19184424 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAA
830 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
19184488 GCATATGGAGTTCATTCCCAGTGAAAGATCAGACCAGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG-AGCACATGCTGGG
* *
19184553 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGTGCACCAT---C---G-----TCGGAGA
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCATCGGAGA
* * *
19184607 ACCTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGAGGGTGTGCACACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGGTGTGCGCACATGATGT
*
19184672 GCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19184737 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGTAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
19184802 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
19184867 GTGCATGCCAACAAATATACAAGGATCACGTCTACCAAGTTTGGGTTCAAAGCTCCTTGCAAAAA
389 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-GCAAAACTCCTTCCGAAAA
* * *
19184932 AATTTTAAAAAATCTCGAACTGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCATCT
453 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
19184997 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAATGGCA
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCA
* * * * *
19185062 TTGGCACATAGAAATATGAAGATATGGCTAAACCCGCCTACCACCATATCGATCCACGGCTTGCG
583 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * ** * *
19185127 TAACTCGTCTCTCTGGCTG-GT-GT-----AGTGCCCGCCCGATCATTTCGTCGGTTGGCTTAGG
648 CATCCCGTCTCTCTGGCAGCGTAGTGCCCGACCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
19185185 CATACGGAGTTAATTCCTAGTCTAAGATCAGACCAGAATGAGGGTTGTGGCAACAGGATCGGTAG
713 CATACAGAGTTCATTCCTAGTCTAAGATCAGACC-GACTGAGGGTTGCGGCAGCAGGATCGGCAG
* * * *
19185250 CACATAGAGGGGGACCCGACCGATCCCCGACTTGCGCACCCTGCCCCTCTGGCTGGCTGAGCGCC
777 CACGTAGA-GGAGACCCGACC-ATCCCCGACTTGCGCATCCTGCCCCTTTGGCTGGCTGAGCGCC
** * * *
19185315 TACACGCTTGTTTCGTGGGTTGACTCAGGCATACGGAGTTCATTCCCAGTTTAA
840 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
19185369 GCATACGGACTTCATTCCCAGTCTAAGATCGGACCGAACCACCAGACCGAGGGTTGCAGGAGCAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-G---G----ACCAGACCGAGGGTTGC-GGAGCAC
* * * * *
19185434 AT-AT----T-G-G---GT--TCG-G--GCATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATC
57 ATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATC
* * * * *** *
19185484 CTTGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGTTTCGGGGGGGTGTGCCCAC
122 ATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCAC
** * *
19185549 ATGATGTGCGATGGGTGCTGGTACTTGGTGCTTATATTGGCCCCCTATCCCTCATCAAA-ATTGA
187 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-
* * *
19185613 AGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGT
251 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
19185678 GTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGA
316 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
19185743 ATTTTTTTATGCATGCCAGCAAAAATACAAGGATAACGTCTACCAAGTTTAGGGCAAAACTCCTT
381 ATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTT
* * * *
19185808 CCGAAAAAATTTTAAAAAATCCCAAACAGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA
446 CCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA
19185873 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
511 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * * * *
19185938 AATGGCATTGGCACATAGAAATATGAAGATATGGCTAAACCCGCCTACCACCCTATCAATCCATG
576 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
*
19186003 GCTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGACCGCCCGCCCGCTCGTTTCGTCGGTT
641 GCTTGCGCATCCCGTCTCTCTGG-CAGCGTAGTGCCCGACCGCCCGCCCGCTCGTTTCGTCGGTT
* * *
19186068 GGCTTAGGTATACGGAGTTCATTCCTAGTATAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGG
705 GGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACC-GACTGAGGGTTGCGGCAGCAGG
* * ** * *
19186133 ATCGGCAACACGTAGAGGCAGACTCGATCCATCCTTGACTTACGCATCCTGCCCCTTTGG-TCGA
769 ATCGGCAGCACGTAGAGG-AGACCCGA-CCATCCCCGACTTGCGCATCCTGCCCCTTTGGCT-GG
**** * *
19186197 CTGAGCGCCCGCACGCTCGTTTTACAGGTTGACTTAGGCATATGGAGTTCATTCCCAGTTTAA
831 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19186260 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGA-CGAAGGGTTGCGGCAGCACTTGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG-AGGGTTGCGG-AGCACATGCTGG
* * * * *
19186324 GCTCGAGCATGTGCTGGTGCTGTATTTTTCATCGCAGGGGCACCATCACCGGAGCATCATCGGAG
64 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCATCGGAG
* * *
19186389 AACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGTTGGCGGGTGGGTGTGCGCACATGAT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG--GCCGGGGGGGTGTGCGCACATGAT
* *
19186454 GTGCGATGGGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCCCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
19186519 CACACCCCCTTAAAAAGCATTTGAGAGTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
19186584 AATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTCCACTTCGAGTTTTTAGCTG-ATTTGT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-T
* *
19186648 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCAAAAACTCCTTCCG-
386 TTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-AAAACTCCTTCCGA
*
19186712 AAAAATTTTAAAAAAT-TCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTC
450 AAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
*
19186776 GTCTTGCCATGCAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAA
* * * *
19186841 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAATCCCACCTAGCACCCTATCGATCCACGGC
578 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
19186906 TTGCGCATCCCGTCTCTTTGGCAGGCGTAGTGCCCGCTTGCTCGCCCGCCCGCTCGTTTCATCGG
643 TTGCGCATCCCGTCTCTCTGGCA-GCGTAGTGCCCG---AC-CGCCCGCCCGCTCGTTTCGTCGG
* ** * * *
19186971 TTAGCTTAGGCATACAGAGTTCATT-CTCAGTCTAAGATTGGACCGACTAAGGGTTACGTCAGCC
703 TTGGCTTAGGCATACAGAGTTCATTCCT-AGTCTAAGATCAGACCGACTGAGGGTTGCGGCAG-C
* * * * * * * * * * *
19187035 A-GATCAGTAGCACTTAGAGAGGGACCTGACTGATCCCTGGCTTGTGCATCCCGCCCCATTGG-T
766 AGGATCGGCAGCACGTAGAG-GAGACCCGAC-CATCCCCGACTTGCGCATCCTGCCCCTTTGGCT
* *
19187098 CGGCTGAGCCCCCGCACGCTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTA
829 -GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
19187163 A
893 A
* *
19187164 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG-AGCACATGCTGGG
* **
19187229 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTC-CTCGGGGCACCATCATCGGAGCATCGCCGGAG
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCAC-CGGGGCACCATCACCGGAGCATCATCGGAG
* * ** * * * *
19187293 AACTTGACCAGTAGCATTAGGGTTACGGCGATCGGGGGGGCCGGAGGGGTGTGCGCACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
19187358 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
** * *
19187423 CACCATCATAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
19187488 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCT-AATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
* * * *
19187552 TATGCATGCCAACAAAAATACAAGGATGACGTCTACCAGGTTTGGGGCAAAAACCCCTTTCGAAA
388 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-AAAACTCCTTCCGAAA
* * * *
19187617 AAATATTAAAAAATCTCGAACCGTAAAAATTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* ** * *
19187682 TTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACTGTTGTATGAATTTACAAGTCATAACAATGA
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA-AATGG
* *
19187747 AATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGCTTG
581 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
19187812 CGCATCCCGTCTCTCTGGCCGGCATAGTGCCC-ACCCGCCGCCCACCCGTTGGTTTCATCGGTTG
646 CGCATCCCGTCTCTCTGG-CAGCGTAGTGCCCGA----CCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * *
19187876 CCATAAGCATACGGACTTCATTCCCAGTCTAAGATC
706 GCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATC
19187912 GGGGGGGCCG
Statistics
Matches: 2983, Mismatches: 353, Indels: 179
0.85 0.10 0.05
Matches are distributed among these distances:
874 22 0.01
876 1 0.00
877 3 0.00
879 2 0.00
880 5 0.00
881 190 0.06
882 12 0.00
883 236 0.08
884 240 0.08
885 47 0.02
886 4 0.00
887 1 0.00
888 2 0.00
889 24 0.01
890 7 0.00
891 210 0.07
892 6 0.00
893 82 0.03
894 181 0.06
895 230 0.08
896 1 0.00
898 73 0.02
899 6 0.00
900 355 0.12
901 105 0.04
902 307 0.10
903 208 0.07
904 265 0.09
905 157 0.05
906 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGAGCACATGCTGGGC
TCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCATCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCATTG
GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCAGCGTAGTGCCCGACCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACAGAGTTCATTCCTAGTCTAAGATCAGACCGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACG
TAGAGGAGACCCGACCATCCCCGACTTGCGCATCCTGCCCCTTTGGCTGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19187174 original size:26 final size:26
Alignment explanation
Indices: 19187138--19187190 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19187128 GTTGACTTTG
19187138 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19187164 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19187190 G
1 G
19187191 ATCGGACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19188433 original size:587 final size:583
Alignment explanation
Indices: 19187322--19188497 Score: 1784
Period size: 587 Copynumber: 2.0 Consensus size: 583
19187312 GGGTTACGGC
19187322 GATCGGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
1 GATCGGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
19187387 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCATCATAAAGAGCATTTGAGATTTTA
66 TTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCACCATAAAGAGCATTTGAGATTTTA
* *
19187452 CAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
131 CAGCTTTACTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGGACACTTTTTTCAAATGGTCACAAA
* * * *
19187517 ATCTTGTACAGTTCGAGTTTTTAGCTAATTTTTTTTATGCATGCCAACAAAAATACAAGGATGAC
196 ATCTTGTACACTTCGAGTTTTTAGCTAATTTTTTTTATGCATACCAAAAAAAATACAAGGATCAC
* * * * *
19187582 GTCTACCAGGTTTGGGGCAAAAACCCCTTTCGAAAAAATATTAAAAAATCTCGAACCGTAAAAAT
261 GTCTAACAAGTTTGGGGCAAAAACCCCTTTCGAAAAAATATTAAAAAATCTCAAACCGCAAAAAG
** * *
19187647 TTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAG
326 TTTCAAAAATCATGAAAAACAGAAAACGAGTCATCTTGCCAAGAAACTTCACGTGAAGGCTTAAG
** * * *
19187712 GGACTGTTGTATGAATTTACAAGTCATAACAATGAAATTGGCACGTAGAAATATGAAGATGTGCC
391 GGACCATTGTATGAATTTACAAGCCATAAAAATGAAATTGGCACGCAGAAATATGAAGATGTGCC
* * * *
19187777 TAAACCCACCTACTACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGC
456 TAAACCCACCTACCACCCTATCGATACACGACTTGCGCATCCCATCTCTCTGGCCGGCATAGTGC
* * * *
19187842 CCACCCGC-CGCCCACCCGTTGGTTTCATCGGTTGCCATAAGCATACGGACTTCATTCCCAGTCT
521 CCACCCGCTCG----CCCGCTCGTTTCATCGGTTGCCATAAGCATACAGAATTCATTCCCAGTCT
19187906 AA
582 AA
19187908 GATCGGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
1 GATCGGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
19187973 TTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCCCTTAAAGA-CAATTTGAGATTTT
66 TTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCACCATAAAGAGC-ATTTGAGATTTT
*
19188037 ACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGCGACACTTTTTTCAAATGGTCACA
130 ACAGCTTTACTGCCAGTAGCCATTAAAGTGTCTGAAAAGGG-GACACTTTTTTCAAATGGTCACA
* * *
19188102 AAATCTTGTGCACTTTGAGTTTTTAGCTGAA-TTTTTTTGTGCATACCAAAAAAAATACAAGGAT
194 AAATCTTGTACACTTCGAGTTTTTAGCT-AATTTTTTTTATGCATACCAAAAAAAATACAAGGAT
* * * *
19188166 CACGTCTAATAAGTTTGGGGCCAAAACTCC-TTCTGAAAAAATTTTAAAAAATCTCAAACCGCAA
258 CACGTCTAACAAGTTTGGGGCAAAAACCCCTTTC-GAAAAAATATTAAAAAATCTCAAACCGCAA
* *
19188230 AAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCATCTTGCCATGAAAGTTCACGTGAAGGCT
322 AAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCATCTTGCCAAGAAACTTCACGTGAAGGCT
**
19188295 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
387 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAAATTGGCACGCAGAAATATGAAGATG
* *
19188360 TGCCTAAGCCCACCTACCACCCTATCGATACACGACTTGCGCATCCCATCTCTCTGGCCGGCGTA
452 TGCCTAAACCCACCTACCACCCTATCGATACACGACTTGCGCATCCCATCTCTCTGGCCGGCATA
* *** *
19188425 GTGCCCACCCGCTCGCCCGCTCGTTTCGTCGGTTGGGTTAGGCATACAGAATTCATTCCCAGTCT
517 GTGCCCACCCGCTCGCCCGCTCGTTTCATCGGTTGCCATAAGCATACAGAATTCATTCCCAGTCT
19188490 AA
582 AA
19188492 GATCGG
1 GATCGG
19188498 ACCGGACCGA
Statistics
Matches: 533, Mismatches: 52, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
584 49 0.09
585 1 0.00
586 163 0.31
587 316 0.59
588 4 0.01
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (583 bp):
GATCGGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
TTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCACCATAAAGAGCATTTGAGATTTTA
CAGCTTTACTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGGACACTTTTTTCAAATGGTCACAAA
ATCTTGTACACTTCGAGTTTTTAGCTAATTTTTTTTATGCATACCAAAAAAAATACAAGGATCAC
GTCTAACAAGTTTGGGGCAAAAACCCCTTTCGAAAAAATATTAAAAAATCTCAAACCGCAAAAAG
TTTCAAAAATCATGAAAAACAGAAAACGAGTCATCTTGCCAAGAAACTTCACGTGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGAAATTGGCACGCAGAAATATGAAGATGTGCC
TAAACCCACCTACCACCCTATCGATACACGACTTGCGCATCCCATCTCTCTGGCCGGCATAGTGC
CCACCCGCTCGCCCGCTCGTTTCATCGGTTGCCATAAGCATACAGAATTCATTCCCAGTCTAA
Found at i:19189444 original size:33 final size:33
Alignment explanation
Indices: 19189389--19189451 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
19189379 TCATTCCCAC
19189389 TCTAAGATCAGGCCAAAACGAGGGTTACGGCAG
1 TCTAAGATCAGGCCAAAACGAGGGTTACGGCAG
* * * *
19189422 TCTAAGATCGGGTCAGACCGAGGGTTACGG
1 TCTAAGATCAGGCCAAAACGAGGGTTACGG
19189452 TAGCACATGC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.29, C:0.21, G:0.33, T:0.17
Consensus pattern (33 bp):
TCTAAGATCAGGCCAAAACGAGGGTTACGGCAG
Found at i:19190688 original size:580 final size:581
Alignment explanation
Indices: 19189559--19190723 Score: 1744
Period size: 580 Copynumber: 2.0 Consensus size: 581
19189549 GGGTTCCGAC
*
19189559 GATCGGGGGGGCCGGAGGGGGGGTGTGCGCACATGATATGCGATGGATGCTGGTACTTGGCCCTT
1 GATCGGGGGGGCCGGA-GGGGGGTGTACGCACATGATATGCGATGGATGCTGGTACTTGGCCCTT
* *
19189624 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCATCATAAAGAGCATTTGAGATT
65 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCACCATAAAGAGCATTTGAAATT
*
19189689 TTACAGGTTTACTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
130 TTACAGCTTTACTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
19189754 AAAATATTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGAT
195 AAAATATTGTACACTTCGAGTTTTTAGCTAATTTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
* * * * **
19189819 GATGTCTACCAAGTTTGGGGCAAAAACCCCTTTCGAAAAAATATTAAAAAATCTCAAACCGTGAA
260 CACGTCTACCAAGTTTGGGGCAAAAACCCCTGTCGAAAAAATATTAAAAAATCCCAAACCGAAAA
* * * * * *
19189884 AAGTTTTGAAAATTGTGAAAAATAGAAAAGGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTT
325 AAATTTTGAAAATCGTGAAAAAAAGAAAACGAGTCATCTTGCCAAGAAACTTCACGTGAAAGCTT
** * * * *
19189949 AAGGGACTGTTGTATGAATTTACAAGCCATAAAAATGAAATTGGCACGTAGAAATATGAAGATGT
390 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAAACTGGCAAGCAGAAATAAGAAGATGT
* *
19190014 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCATAG
455 GCCGAAACCCACCTACCACCCTATCGATCCACGGCTTACACATCCCGTCTCTCTGGCCGGCATAG
* * * *
19190079 TGCCCGCCCACTCGCTGGTTTCGTCGGTTGCCATAGGCATACGGACTTCATTCCCAGTCTAA
520 TGCCCGCCCACCCGCTCGTTTCATCGGTTGCCATAGGCATACAGACTTCATTCCCAGTCTAA
* *
19190141 GATCGGGGGGGCC-GA-GGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
1 GATCGGGGGGGCCGGAGGGGGGTGTACGCACATGATATGCGATGGATGCTGGTACTTGGCCCTTA
* * *
19190204 TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA-CAATTTGAAATT
66 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCACCATAAAGAGC-ATTTGAAATT
* * *
19190268 TTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCAC
130 TTACAGCTTTACTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
19190333 AAAATCTTGTACACTTTGAGTTTTTAGCTAATTTTTTGTTGTGCATGCCAAAAAAAATACAAGGA
195 AAAATATTGTACACTTCGAGTTTTTAGCTAATTTTTT-TTGTGCATGCCAAAAAAAATACAAGGA
* * * * *
19190398 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTGTCGAAAAAATTTTAAAAACTCCCAAATCGAAA
259 TCACGTCTACCAAGTTTGGGGCAAAAACCCCTGTCGAAAAAATATTAAAAAATCCCAAACCGAAA
*
19190463 AAAATTTTGAAAATCGTGAAAAAAA-AGAAACGAGTCATCTTGCCATGAAACTTCACGTGAAAGC
324 AAAATTTTGAAAATCGTGAAAAAAAGA-AAACGAGTCATCTTGCCAAGAAACTTCACGTGAAAGC
**
19190527 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCAAGCAGAAATAAGAAGAT
388 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAAACTGGCAAGCAGAAATAAGAAGAT
* * * *
19190592 GTGCCGAAACCCACCTACCACCCTATCGATCCATGGCTTGCACATCCCGTCTCTCTGGGCGGCGT
453 GTGCCGAAACCCACCTACCACCCTATCGATCCACGGCTTACACATCCCGTCTCTCTGGCCGGCAT
* * * * * *
19190657 AGTGCCCTCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAA
518 AGTGCCCGCCCACCCGCTCGTTTCATCGGTTGCCATAGGCATACAGACTTCATTCCCAGTCTAA
19190721 GAT
1 GAT
19190724 AAGACCAGAC
Statistics
Matches: 522, Mismatches: 58, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
578 1 0.00
579 198 0.38
580 308 0.59
581 2 0.00
582 13 0.02
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (581 bp):
GATCGGGGGGGCCGGAGGGGGGTGTACGCACATGATATGCGATGGATGCTGGTACTTGGCCCTTA
TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCACCATAAAGAGCATTTGAAATTT
TACAGCTTTACTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
AAATATTGTACACTTCGAGTTTTTAGCTAATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGGCAAAAACCCCTGTCGAAAAAATATTAAAAAATCCCAAACCGAAAAA
AATTTTGAAAATCGTGAAAAAAAGAAAACGAGTCATCTTGCCAAGAAACTTCACGTGAAAGCTTA
AGGGACCATTGTATGAATTTACAAGCCATAAAAATGAAACTGGCAAGCAGAAATAAGAAGATGTG
CCGAAACCCACCTACCACCCTATCGATCCACGGCTTACACATCCCGTCTCTCTGGCCGGCATAGT
GCCCGCCCACCCGCTCGTTTCATCGGTTGCCATAGGCATACAGACTTCATTCCCAGTCTAA
Found at i:19190890 original size:26 final size:26
Alignment explanation
Indices: 19190854--19190906 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19190844 GTTGACGTAG
*
19190854 GCATACGGAGTTGATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
19190880 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
19190906 G
1 G
19190907 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:19193238 original size:11 final size:11
Alignment explanation
Indices: 19193222--19193265 Score: 70
Period size: 11 Copynumber: 4.0 Consensus size: 11
19193212 ACCGGGGCAC
19193222 CATCGTCGGAG
1 CATCGTCGGAG
19193233 CATCGTCGGAG
1 CATCGTCGGAG
*
19193244 CATCGTCAGAG
1 CATCGTCGGAG
*
19193255 CATCATCGGAG
1 CATCGTCGGAG
19193266 AACTTGACCG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.23, C:0.27, G:0.32, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:19196584 original size:903 final size:894
Alignment explanation
Indices: 19195216--19199545 Score: 5224
Period size: 903 Copynumber: 4.9 Consensus size: 894
19195206 CGGGATGCAT
** *
19195216 GCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTGTAAGCATAC-GAAGTTCAT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG-AGTTCAT
* * ** * ** *
19195280 T-CTCAGTCTAACATTGGATCGAAAAGAGGGTTGCGCCAGCTTATGCTGGGCTCGGCCATGTGCT
65 TAC-CAGTCTAAGATCGGATCG-ACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
* * * *
19195344 GGTGCCGCATTTTTCTTCGCTGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCAAC
128 GGTGCCGCATTTTTCTTCGCTGGGGCACCATC-TCAGAGCAACGTCGGAGAACCTGACCGGCAGC
* *
19195409 ATTAGTGTTCCGACGA-T------CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
192 ATTGGGGTTCCGACGATTCGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
19195467 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAATAGCA
257 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
19195532 TTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
322 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
19195597 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTGTTTTT-AGCATGCCAACAAAA
387 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAAAAAAA
* * * **
19195661 ATACAAGGATTACCTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTG
451 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* *
19195726 GAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
516 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
19195791 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAAT
581 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAT
* *
19195856 ATGAAGATGTCCCTAAACCCTCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
646 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * *
19195921 GTCGACATAGTGACCACCTGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTCGGCATACGAAGT
711 GCCGACGTAGTG-CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGT
* * * *
19195986 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCTGCAGCAGGATCGGCAAG-ACGTAGAC
775 TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCTGCAGCAGGATCGAC-AGCACGCAGAG
19196050 GGGGACTCAGTCGATCCCTAGCTTGCGCATCTCGCCCCTTTGGTCGGCTGAGCACCCGTAC
839 GGGGAC-C-GTCGATCCC-AGCTTGCGCATCTCG-CCCTTTGGTCGGCTGAGCACCC-TAC
** * * *
19196111 GCTCGTTTCGTGGGTTGTTTTAGGCATAC-GACGTTCATTCCCTGTCTAAGCGTACAGAGTGCAT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGA-GTTCATTCCCAGTCTAAGCATACAGAGTTCAT
* * *
19196175 TACCAGTCTAAGATTGGATCAGACCGAGGGTTGCAACAGCACATGCTGGGCTTGGGCATGTGCTG
65 TACCAGTCTAAGATCGGATC-GACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
* * *
19196240 GTGCCACATTTTTCTTCTCCGGGGCACCATCGTCAGAGCAACGTCGGAGAACCTGACCGGCAGCA
129 GTGCCGCATTTTTCTTCGCTGGGGCACCATC-TCAGAGCAACGTCGGAGAACCTGACCGGCAGCA
* * * *
19196305 TTGGGGTTTCGACGATTGGGGGGGCCGGGGGGTGTCCGCACATGATGTGCGATGGGTGCTGGTAC
193 TTGGGGTTCCGACGATT-CGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
19196370 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
257 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * *
19196435 TTTGGGATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGTAATGGGGACACTTTTTTCA
322 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * *
19196500 AATGGTCACAAAATCTTGTACACTTCGATTTTTTAGTTGAATTTTTTTAT-TAGTGCCAAAAAAA
387 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA-TGCCAAAAAAA
* * *
19196564 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAAATTTTAAAAAATTCC
451 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * * * *
19196629 AAACCGTAAAAAGATTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCAGGAAACTTCAC
516 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
19196694 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGGCATTGGCACACAAAAA
581 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GGCATTGGCACACAGAAA
* *
19196758 TATGAGGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCT
645 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * *
19196823 GGCCAACGTAGT---GCCCGCCCGCCCGCTCGCTCTTTTCATCGGTTGGCTTAGGCATACGGAGT
710 GGCCGACGTAGTGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGT
* * * ** *
19196885 TCATTCCTAGTCTAAGATCGGACCAGACTGAGGGTTG-TGGCAGCAAGATCGGTAGCACGCAAAG
775 TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCT-GCAGCAGGATCGACAGCACGCAGAG
* * * * *
19196949 GGGGACCCGGTCGATCCCCAACTTGCGCATCCCGCCGTTCTGGTCGACTGAGCGCCCTCAC
839 GGGGA-CC-GTCGAT-CCCAGCTTGCGCATCTCGCCCTT-TGGTCGGCTGAGCACCCT-AC
* *
19197010 GCTCGTTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
* ** * * * * * *
19197075 CCCAGTCTAAGATCAAACCAAACCCAGGGTTGCGATAGCACATGCTTGGCTCAGGCATGTGCTGG
66 ACCAGTCTAAGATCGGATC-GACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * * * * * * *
19197140 TGCTGCATTTTTCTTCGCCGGAGCACCATCGCCGGAGCATCGCCGGAGAACCCGATCGACGGCAT
130 TGCCGCATTTTTCTTCGCTGGGGCACCATC-TCAGAGCAACGTCGGAGAACCTGACCGGCAGCAT
* *
19197205 TAGGGTTCCGGCGA-TCGAGGGGGTCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
194 TGGGGTTCCGACGATTC--GGGGG-C-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
19197269 ACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCATAAAGAG
255 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
19197334 CATTTCAGATTTTACAGGTTTGCAGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
320 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * * * *
19197399 CAAATGGTCATAAAATCTTATACACTTCGAGCTTTTGGCTGAATTTTTTTGTGCACGCCAACAAA
385 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* * ** * *
19197464 AATACAAGGATCTCGGCTACCAAACTCGGAGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCC
450 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * ** **
19197528 CGAACCGTAAAAGGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACAAAACTTCA
515 CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* **
19197593 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
580 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
* * *
19197658 TATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCGCATCCTGCCTCTCT
645 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * * * *
19197723 GGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGTTCGTTTCGTCAGTTGGCTAAGTCATATGAAG
710 GGCCGACGTAGTG-CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAG
** * * * * *
19197788 TTTGTTCCCAGTCTAAGATCAGACCAGACTGAGGCTTGC-GACAGAAGGATCAACGGCACGTAGA
774 TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCTG-CAGCAGGATCGACAGCACGCAGA
* * * * *
19197852 GGGGGACC--CGGT--CA--AT---CA--TCG-GC--T--T--G-T--GCA-TCT-T
838 GGGGGACCGTCGATCCCAGCTTGCGCATCTCGCCCTTTGGTCGGCTGAGCACCCTAC
* * * * *
19197886 GC-C----CCT---TTGGC-TAGGCATACGGAGTTCATTCCCATTCTAAGCATACGGAGTTAATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
* * * *
19197942 CCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
66 ACCAGTCTAAGATCGGA-TCGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG
* *
19198007 TGCCGCATTTTTCTTCGCTGGGGCACTATCTGCAGAG-AAC-T----TAA-CT----GGCAGCAT
130 TGCCGCATTTTTCTTCGCTGGGGCACCATCT-CAGAGCAACGTCGGAGAACCTGACCGGCAGCAT
*
19198061 TGGGGTTCCGACGA-TC-GGGG-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTCCTT
194 TGGGGTTCCGACGATTCGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
19198123 GGCCATTATATTGG-CCCTTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATT
259 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * * *
19198187 TGAAATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGAAAC-TTTTTGAAA
324 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* **
19198251 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTGTGCATGCCACGAAAAATA
389 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
* * *
19198316 CAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCGCGAA
454 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
* *
19198381 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTGTTGCCATGAAACTTCACGTG
519 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
***
19198446 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCACTTTGAAATATG
584 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
* *
19198510 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCATCCCGTCTCTCTGGCC
649 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
** * * * * * * ** *
19198575 G-TTTAGTGCCCGCCCGTCCGCTCGCACACTCGTTTTGTCGATTGGCTTAGGCGCACGGAGTTCA
714 GACGTAGTG-CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCA
* *** * * *
19198639 TTCACAGTCTAAGATCAGATGGGAATGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGG
778 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCTGCAGCAGGATCGACAGCACGCAGAGGGGG
* * * * *
19198704 ACCCGATCGATCCCCGACTTGCGCATC-CTGCCCCTCTGGCCGGTTGAGCGCCCATAC
843 A-CCG-TCGATCCCAG-CTTGCGCATCTC-G-CCCTTTGGTCGGCTGAGCACCC-TAC
* * *
19198761 GCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-AT-C--AG------
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
* * *
19198816 ---A--C------CGGATC-A---AGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGG
66 ACCAGTCTAAGATCGGATCGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * *
19198866 GCCACATTTTTCTTCGCTGGGGCGCCATCTC----C-A-GT----GAACCTGACTGGCAGCATTG
131 GCCGCATTTTTCTTCGCTGGGGCACCATCTCAGAGCAACGTCGGAGAACCTGACCGGCAGCATTG
*
19198921 GGGTTCCGACGATTACGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
196 GGGTTCCGACGATT-CGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
19198986 GCCATTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTT
260 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
19199051 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACAC-TTTTTGAAAT
325 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
19199115 GGTCACCAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
390 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* * *
19199180 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTCAAAAATCCCAAAC
455 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* *
19199245 CACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACGTGA
520 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* **
19199310 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGA
585 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
* *
19199375 AGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCG
650 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * *
19199440 ACGTAGTGCTCGCCCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATA-TAGAGTTCA
715 ACGTAGTGC-CGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGA-AGTTCA
* * * *
19199504 TTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCA
778 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCTGCAGCA
19199546 CATGCTTGGC
Statistics
Matches: 2965, Mismatches: 378, Indels: 214
0.83 0.11 0.06
Matches are distributed among these distances:
847 97 0.03
848 184 0.06
849 212 0.07
850 54 0.02
851 3 0.00
853 9 0.00
854 2 0.00
856 21 0.01
857 1 0.00
858 88 0.03
859 3 0.00
860 3 0.00
861 8 0.00
862 55 0.02
863 330 0.11
864 85 0.03
865 83 0.03
866 2 0.00
867 126 0.04
868 4 0.00
869 2 0.00
870 1 0.00
871 3 0.00
872 2 0.00
873 1 0.00
874 1 0.00
875 3 0.00
876 3 0.00
878 2 0.00
879 2 0.00
880 3 0.00
881 1 0.00
882 1 0.00
883 6 0.00
884 29 0.01
886 1 0.00
890 2 0.00
892 2 0.00
894 2 0.00
895 174 0.06
896 4 0.00
897 2 0.00
898 9 0.00
899 312 0.11
900 211 0.07
901 251 0.08
902 12 0.00
903 460 0.16
904 93 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
ACCAGTCTAAGATCGGATCGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGT
GCCGCATTTTTCTTCGCTGGGGCACCATCTCAGAGCAACGTCGGAGAACCTGACCGGCAGCATTG
GGGTTCCGACGATTCGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
CGTAGTGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTC
CCAGTCTAAGATCAGACCAGACTGAGGGTTGCTGCAGCAGGATCGACAGCACGCAGAGGGGGACC
GTCGATCCCAGCTTGCGCATCTCGCCCTTTGGTCGGCTGAGCACCCTAC
Found at i:19197069 original size:26 final size:26
Alignment explanation
Indices: 19197033--19197085 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19197023 GTTGACTTAG
19197033 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19197059 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19197085 G
1 G
19197086 ATCAAACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19197936 original size:26 final size:26
Alignment explanation
Indices: 19197900--19197952 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19197890 CTTTGGCTAG
* *
19197900 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
19197926 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
19197952 G
1 G
19197953 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:19201678 original size:708 final size:705
Alignment explanation
Indices: 19200343--19201838 Score: 2277
Period size: 708 Copynumber: 2.1 Consensus size: 705
19200333 AGCACCTGCA
* * * *
19200343 CGCTCGTTTCAT-GGTGTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGGACCGGACC
1 CGCTCGTTTCGTCGGT-TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGACC
** * * *
19200407 GAGGGTTGTGACAGCACATGCTAGGATCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGC
65 GA-GGTTACGACAGCACATGCTAGGATCAGGCATGTGCTGGTGCCGCACTTTTCTTCGTCGGGGC
* * *
19200472 ACCATCGCCAGAGCATTGCCGAAGAACCTGACCAGCGTCATTAGGGTTCCGACGATCGAGGGGGC
129 ACCATCGCCAGAGCATCGCCGAAGAACCTGACCAGCGGCAATAGGGTTCCGACGATC-AGGGGGC
19200537 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCCTATATTGGCCCCCTAT
193 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCCTATATTGGCCCCCTAT
*
19200602 CCCTCATCCAAACTCTAGAACTCACAGCCCCTTAAAGAGCATTTGAGATTTTACAACTTTGCTAC
258 CCCTCATCCAAACTCGAGAACTCACAGCCCCTTAAAGAGCATTTGAGATTTTACAACTTTGCTAC
* *
19200667 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
323 CAGTAGCCATTAAAGTGTCTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
19200732 TCGAGTTTCTCGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTT
388 TCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTT
*
19200797 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCA
453 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCA
* *
19200862 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTAT
518 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGCCTTAAGGGACCATTGTAT
*
19200927 GAAATTACAAGCCATAAAAATGGCATTGGCATGCAGAAAATATGGAGATGTGCCTAAACCCACCT
583 GAAATTACAAGCCATAAAAATGGCATTGGCA-GCAGAAAATATGAAGATGTGCCTAAACCCACCT
* * *
19200992 ACCACCCTATCAATCCACGGCTAGCGCATCCCGTCTCTCTCGCCGACGTAGTGCCCGCCCGTC
647 ACCACCCTATCAATCCACGGCTAGCACATCCCATCTCTCTAGCCGACGTAGTGCCCG--C--C
* * *
19201055 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCG
* * * * *
19201120 AGGTTACGACAGCGCATGCTGGGCTCAGGCATGTGCTGGTGCTGCACTTTTCTTCGTTGGGGCAC
66 AGGTTACGACAGCACATGCTAGGATCAGGCATGTGCTGGTGCCGCACTTTTCTTCGTCGGGGCAC
* * * * * * *
19201185 CATCGCCGGAGCATCGCCGGAGAACCTGACCGGTGGCAATGGGGTTCTGGCGAT-AGGGGGCC-G
131 CATCGCCAGAGCATCGCCGAAGAACCTGACCAGCGGCAATAGGGTTCCGACGATCAGGGGGCCGG
19201248 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC-CCTTATATTGGCCCCCTATCC
196 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCC-TATATTGGCCCCCTATCC
* ** *
19201312 CTCAT-CAAACCTCGAGAACTCACA-CCCCTTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGC
260 CTCATCCAAA-CTCGAGAACTCACAGCCCC-TTAAAGAGCATTTGAGATTTTACAACTTTGCTAC
19201375 CAGTAGCCATTAAAGTGTCTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
323 CAGTAGCCATTAAAGTGTCTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
19201440 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGT
388 TCGAGTTTCTAGCTGAATTTTTTTGTGCATGCC-AAAAAAAATACAAGGATCACATCTACCAAGT
* * * *
19201505 TTGGTGCCAAAATTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATC
452 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATC
* *
19201570 ATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACTATTGTA
517 ATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGCCTTAAGGGACCATTGTA
** *
19201635 TGAGTTTACAAGCCATAAAAATGGCATTGGCA-CATAGAAATATGAAGATGTGCCTAAACCCACC
582 TGAAATTACAAGCCATAAAAATGGCATTGGCAGCAGA-AAATATGAAGATGTGCCTAAACCCACC
* * * *
19201699 TACGACCCTATCGATCCACGGCTTGCACATCTCATCTCTCTAGCCGACGTAGTGCCCGCC
646 TACCACCCTATCAATCCACGGCTAGCACATCCCATCTCTCTAGCCGACGTAGTGCCCGCC
* * *
19201759 CGCTCGTTTCGTCGGTTGGCTTAGGCATATGAAGTTCATTCCCAGTGTAAGATAGGACCGGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCG
19201824 AGGCTTACGACAGCA
66 AGG-TTACGACAGCA
19201839 GGATCGACAG
Statistics
Matches: 714, Mismatches: 63, Indels: 21
0.89 0.08 0.03
Matches are distributed among these distances:
704 63 0.09
705 10 0.01
706 1 0.00
707 13 0.02
708 281 0.39
709 189 0.26
711 98 0.14
712 56 0.08
713 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (705 bp):
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCG
AGGTTACGACAGCACATGCTAGGATCAGGCATGTGCTGGTGCCGCACTTTTCTTCGTCGGGGCAC
CATCGCCAGAGCATCGCCGAAGAACCTGACCAGCGGCAATAGGGTTCCGACGATCAGGGGGCCGG
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCCTATATTGGCCCCCTATCCC
TCATCCAAACTCGAGAACTCACAGCCCCTTAAAGAGCATTTGAGATTTTACAACTTTGCTACCAG
TAGCCATTAAAGTGTCTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTCTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGG
GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGA
AAAATAAAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGCCTTAAGGGACCATTGTATGAA
ATTACAAGCCATAAAAATGGCATTGGCAGCAGAAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCAATCCACGGCTAGCACATCCCATCTCTCTAGCCGACGTAGTGCCCGCC
Found at i:19201978 original size:26 final size:26
Alignment explanation
Indices: 19201942--19201994 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19201932 GTTGACTTAG
* * *
19201942 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
19201968 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
19201994 G
1 G
19201995 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:19203195 original size:871 final size:869
Alignment explanation
Indices: 19201057--19205138 Score: 4606
Period size: 871 Copynumber: 4.6 Consensus size: 869
19201047 CGCCCGTCCG
* * * ** *
19201057 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA-AG-ATTGGA-C-CAGAC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTACAGTATCAGATCAGAGAC
* * ** * *
19201118 TGA-GGTTACGACAGCGCATGCTGGGCTC-AGGCATGTGCTGGTGCTGCACTTTTCTTCGTTGGG
66 CGAGGGTTACGACAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCACATTTTTCTTCG-TCGG
* ** * *
19201181 GCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGTGGCAATGGGGTTCTGGCGAT-AGGGGG
129 G-ACCATCG-C-GAGCATCACCGGAGAACCTGACCGACGGC-ATGGGGTTCCGACGATCAGGGGG
19201245 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
190 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
19201310 CCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGC
255 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
19201375 CAGTAGCCATTAAAGTGTCTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
320 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * **
19201440 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGT
385 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAGAATACAAGGATCACGTCTAATAAGT
* * ** *
19201505 TTGGTGCCAAAATTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATC
449 TTGG-GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATC
* * * *
19201570 ATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACTATTGTA
513 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTA
* *
19201635 TGAGTTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
578 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGAGGTGCCTAAACCCACCT
* * * *
19201700 ACGACCCTATCGATCCACGGCTTGCACATCTCATCTCTCTAGCCGACGTAGTG--C-CC-GCCCG
643 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCTGCCCG
* * *
19201761 ----CTCGTTTCGTCGGTTGGCTTAGGCATATGAAGTTCATTCCCAGTGTAAGATAGGACCGGAC
708 CCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATA-GACCGGAT
* * *
19201822 CGAG-GCTTAC-GACAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTACG
772 CGAGAG-TTGCAG-CAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTACG
* * * *
19201885 CATCGCGCCCCTCTGGCTGGCTGAGCGCCCGCTCG
835 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACA
* * *
19201920 CTTGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC----CT--G--T-C-----T-A---
* * * * *
19201985 CCAGTATAAGATCAGACCAGACCGAGGGTTACAACAGTACATACTGGGCTCGGGCAT-TAGCTGG
48 -CAGTATCAGATCAG---AGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGT-GCTGG
* * * * *
19202049 TGCCACATTTTTCTTCGCTGGGGCACCATCATCGGAGCATAATCGGAGAACCTGACCAACGGCAT
108 TGCCACATTTTTCTTCG-TCGGG-ACCATC-GC-GAGCATCACCGGAGAACCTGACCGACGGCAT
* * *
19202114 CGAGGTTCCGACGATC-GAGGGGCCGGCGGAGGTGTGCGCACTTGATGTGCAATGGGTGCTGGTA
169 -GGGGTTCCGACGATCAG-GGGGCCGG-GG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
19202178 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
230 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * * *
19202243 ATTTCAGATTTTACAGGTTTTCTACCAGTAGCCATTAAAGTGTCTAGAATGAGGACACTTTTTTC
295 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
* *
19202308 AAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAGA
360 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAGA
*
19202373 ATACAAGGATCACGTCTAATAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTC
425 ATACAAGGATCACGTCTAATAAGTTTGGG-CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC
* * * * *
19202438 AAACCGCAAAGAGTTTTGAAAATCATGAAAAAAAGAAAACGAGTTGTCTTGCCATGAAACTTCAC
489 GAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
19202503 GTCAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TTTGAAAT
554 GTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAAT
* * * *
19202567 ATGAAGAGGTGCCTAAACACACCTACCATCCTATTGATCCACAGCTTGCGCATCCCGTCTCTCTA
619 ATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTA
* *
19202632 GCCGACGTAGTG-CCGCTTGCCCGCCCACTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCAT
684 GCCGACGTAGTGCCCGCCTGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * ** *
19202696 TCCCAGTGTAGGATCAGACCGGATCGAGAGTTGCAGCAGCAGGATTGGTAGCACATAGAGGGGGA
749 TCCCAGTGTAAGAT-AGACCGGATCGAGAGTTGCAGCAGCAGGATCGACAGCACGTAGAGGGGGA
** * * *
19202761 CCCGACCGATCCCCGACTTGTGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACT
813 CCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACA
*
19202818 CTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTA-AG-ATCAGATC-G-GAC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTACAGTATCAGATCAGAGAC
* * * *
19202879 CGAGTGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCAATTTTCTTCGTCGAGG
66 CGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCG-GG
* * *
19202944 TACCATCGTCAGAGCATCACCGGAGAACCTGCCCGACGGCATTAGGGTTCCGACGATCGGAGGGG
130 -ACCATCG-C-GAGCATCACCGGAGAACCTGACCGACGGCA-TGGGGTTCCGACGATCAG-GGGG
19203009 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
190 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
19203074 CCCTCATCAAACCTTGAGAACTCACACCCCATTAAAGACCATTTGAGATTTTACAGGTTTGCTTC
255 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * * *
19203139 CAGTAGCTATTAATGTGTCTGAAATGGGGACATTTTTTTCGAATGGTCACAAAATCTTGTACACT
320 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * **
19203204 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTT
385 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAGAATACAAGGATCACGTCTAATAAGTT
* * * * *
19203269 TGGGGCCAAAAATCCTTTCGAAAAAAGTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAAACA
450 T-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCA
* *
19203334 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTAT
514 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTAT
** *
19203399 GAATTTACAAGCCATAAAAATGGCATTGGCAGGTAGAAATATGAAAAGGTGCCTAAACCCACCTA
579 GAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGAGGTGCCTAAACCCACCTA
* * * * * ** *
19203464 CTACCTTATCGATCCACTGCTTGTGCATCCCGTCTCTCTGGCCGGTGTAGTGCCTACCCGCCTAC
644 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTG----CCCGCCTGC
* * * *
19203529 CCACCCACCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAA
705 CCGCCCA----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGAT-AG
* * * * * * *
19203594 ATCGGATGGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACTCGACCGATCCCC-AG
765 ACCGGATCGAGAGTTGCAGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGA-
* * * *
19203658 CTTGC-CATCCTGCCCATCTGACCGGCTGAGCGCCCGCACA
829 CTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACA
* * * *
19203698 CTCGTTTCATGGGTTAACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATATGGGGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCT-A-C--A----G-T-A---
* * ** *
19203763 CCCGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGTTGGGCTCGAGCATGTGCTGGT
53 ----TC--AGATC--A-GAGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCTGGT
* * * *
19203828 GCCACATTTTTCTTCATCGGG------GC-ACCATCGCCGGAGAACCTGACCGACGGCATTGGGC
109 GCCACATTTTTCTTCGTCGGGACCATCGCGAGCATCACCGGAGAACCTGACCGACGGCA-TGGGG
* * *
19203886 TTCCGACAATCAGGGGGCTGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
173 TTCCGACGATCAGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
19203951 CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACACACACCCCCTTAAAGAGCATTTGAG
237 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * *
19204016 AAATTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTAAAATGGGGACACCTTTTTCAAATGG
302 -ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
* *
19204081 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAGGAATACAA
366 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAGAATACAA
* * ** * *
19204146 TGATCTCGTCTAATAAGTTTGGGGCCAAAA-TGCCTTTTGAAAAAATTTTAGAAAATCCCGAACC
431 GGATCACGTCTAATAAGTTT-GGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCTCGAACC
* * *
19204210 CCAAAAATTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTCAA
494 GCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTCAA
19204275 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
559 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
*
19204340 GAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-A
624 GAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGA
* * *
19204404 GCGTAGTGCCCGCCCGCCCATCGGCCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAA
689 -CGTAGTGCCCGCCTG-CC--C-GCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * *
19204469 TCCCA--GT---CTA-A---GATC-AGA-TTGGA-CAGTAGGCTCGATAGCACGTTA-AGGGTGA
749 TCCCAGTGTAAGATAGACCGGATCGAGAGTTGCAGCAGCAGGATCGACAGCACG-TAGAGGGGGA
* * * * ***
19204521 CCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGACTAAGTGTATGCACA
813 CCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACA
* *
19204578 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC--TGT---C-TAC--AG-----T-
19204643 CCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCTG-GCATGTGCTGG
52 --A-TC--AGATCAG---AGACCGAGGGTTACGACAGCACATGCTGGGCTC-GAGCATGTGCTGG
* * ** * * * * *
19204707 TGTCATATTTTTCTTCACCGGG------GC-ACCATCACCGGAAAACCTGACTGGCGACATGGGG
108 TGCCACATTTTTCTTCGTCGGGACCATCGCGAGCATCACCGGAGAACCTGACCGACGGCATGGGG
* * * * **
19204765 TTTCGGCGATCGGGGGGCCGGGGGGGTGTCCGCACATGATGTGCGATGGGTGCTGGTTGTTGGCC
173 TTCCGACGATCAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * *
19204830 CTTTTATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAG
237 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * *
19204895 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATAGGGACACTTTTTTCAAATGGC
302 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGT
* *
19204960 CACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAGAATACAAA
367 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAGAATACAAG
* * *
19205025 GATCACGTCTAATAAGTTTAGGGCCAAAACTCCTTACGAAAAAATTTTAAAAAATCTCGAGCCGT
432 GATCACGTCTAATAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGC
* * *
19205090 AAAAAGCTTTAAAAATCGTGAAAAATACAAAACGAGTCGTCTTGCCATG
496 AAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
19205139 TAGAAATATA
Statistics
Matches: 2760, Mismatches: 341, Indels: 221
0.83 0.10 0.07
Matches are distributed among these distances:
863 35 0.01
867 1 0.00
869 1 0.00
871 379 0.14
872 178 0.06
873 12 0.00
876 1 0.00
877 20 0.01
878 221 0.08
879 158 0.06
880 235 0.09
881 110 0.04
882 4 0.00
883 3 0.00
884 9 0.00
885 5 0.00
886 4 0.00
887 1 0.00
889 11 0.00
890 95 0.03
891 83 0.03
892 221 0.08
893 213 0.08
894 12 0.00
895 149 0.05
896 358 0.13
897 1 0.00
898 170 0.06
899 5 0.00
901 5 0.00
905 2 0.00
906 58 0.02
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (869 bp):
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTACAGTATCAGATCAGAGAC
CGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGA
CCATCGCGAGCATCACCGGAGAACCTGACCGACGGCATGGGGTTCCGACGATCAGGGGGCCGGGG
GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAGAATACAAGGATCACGTCTAATAAGTTTGGGCC
AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCATGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCTGCCCGCCCACTCG
TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATAGACCGGATCGAGAGTTG
CAGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCC
TCTGGCCGGCTGAGCGCCCGCACA
Found at i:19203749 original size:26 final size:26
Alignment explanation
Indices: 19203720--19203772 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19203710 GTTAACTTAG
*
19203720 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
19203746 GCATATGGGGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19203772 G
1 G
19203773 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19204636 original size:26 final size:26
Alignment explanation
Indices: 19204600--19204652 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19204590 GTTGACTTAG
*
19204600 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19204626 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19204652 G
1 G
19204653 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19205445 original size:26 final size:26
Alignment explanation
Indices: 19205415--19205493 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
19205405 GTTGACTTAG
19205415 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19205441 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19205467 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19205493 G
1 G
19205494 ATCGGACCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19207061 original size:26 final size:26
Alignment explanation
Indices: 19207025--19207077 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19207015 GTTGACTTAG
19207025 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
19207051 GCATGCGGAGTTCATTCCTAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19207077 G
1 G
19207078 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19207964 original size:26 final size:26
Alignment explanation
Indices: 19207928--19207977 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
19207918 TTGACTTAGG
19207928 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
19207954 CATACGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTCATTCCCAGTCTA
19207978 CGATCGGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:19208858 original size:26 final size:25
Alignment explanation
Indices: 19208821--19208872 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
19208811 GTTGACTTAG
* *
19208821 GCATACGAGTTCATTCCTAGTGTAA
1 GCATACGAGTTCATTCCCAGTCTAA
19208846 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
19208872 G
1 G
19208873 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:19209755 original size:26 final size:26
Alignment explanation
Indices: 19209719--19209771 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19209709 GTTGACTTAG
*
19209719 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19209745 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19209771 G
1 G
19209772 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19210184 original size:897 final size:899
Alignment explanation
Indices: 19206174--19213048 Score: 8872
Period size: 897 Copynumber: 7.7 Consensus size: 899
19206164 GTTGCCTTAG
* *
19206174 GCATACGGAGTTCATTCCCAGTCTAAGATC-GATCGGACTGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* *
19206238 CTCGAGCATGTGCTGGAGCCG--TATTT-TTC-T----------TCGTCGGAGCATCGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGCCGGAGA
*
19206289 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * * * *
19206353 CGTTGGGTTCTGGTACTTTGCCATTATATTTGCCCCCTATCCCCCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * * * *
19206418 ACCCCTTTAAAGAGCATTTGAGATTTTATAAGTTTGCTACCAGTAGCCGTGAAAGTGTCTTAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
19206483 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTTGCTGAATATCTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTG
* *
19206548 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAA
* ** * * * *
19206613 AAGTTTAAAAAATCCTGAGCAGCAAAAAGTTTCAAAAATCATGAAAAATTGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCAAACATCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
19206678 TGCCATGAAACTACACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
19206743 ATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCGACTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
19206808 GTATCCCGTCTCTCTGGCTGACGTACTGCCCGCCCGCCCGTCCACACGTTCGTTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG--C-C-CGCTCGTTTCGTCGGTTGG
* * * *
19206873 CTTAGGCATACGAAGTTCATTCCCAGTCCAAGATCGGACCAGATC-GAGGG-T----T-----G-
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACAGAGGGTTGAGGTAGCAAGA
* * * *** * * * *
19206926 -CGGTAGCACGCAAAGGGGGACCTGGCCGATCCTAAGCTTGTGCATCCCGCCCTTATGGTC-AGC
774 TCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA-C
** *
19206989 TGAATGCCCTCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
19207051 GCATGCGGAGTTCATTCCTAGTTTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACGTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * **
19207116 CTCGAACATGTGCTGGTGTCC-CATTTTTCTTTGTCGGGGCACCATC-TCCGGAGTATCATCGGA
66 CTCGAGCATGTGCTGGTG-CCGCATTTTTCTTCGTCGAGGCACCATCGT-CGGAGCATCGCCGGA
* * *
19207179 GAACCTGACCGACGACATTGGGGTT-CTAGCGATC-GGGGGGCCGGGGGGGTGTGTGCACATGAT
129 GAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
* ***
19207242 GTACGATGGGTGCTGGTACTTGGCCCTTATATTTTTCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
19207307 CACATCCCCTTAAAGAGCATTTGAGATTTT-CTAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
258 CACACCCCCTTAAAGAGCATTTGAGATTTTAC-AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
19207371 AAATTGGGACACTTTTTTCGAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTT
322 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
** *
19207436 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTTCAAAACTCCTTTCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * * *
19207501 AAAATTTTAAAAAATACCGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTG
452 AAAATTTTAAAAAAT-CCCAAACATCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCG
*
19207565 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
19207630 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
19207695 TACCCATCTCGTCTCTCTGGCCGACGTAGTGCCCACCCGTCCGTCCGCCCGCTCATTTCATCGGT
646 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C--CCGCCCGCTCGTTTCGTCGGT
* * ** * * *
19207760 TGGCTTAGGCATGCAGAGTTCATTCCCAGTCTAAGATCAGACC-AGATTGACGGTTGCGGCAGCA
707 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACAGAGGGTTGAGGTAGCA
* * ** *** * * *
19207824 GGATCGGTAGCACGTAGAGGGTTACCCTTTCGATCCCCGACTTACGCATCCCGCCCCTCTAGCCG
771 AGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* **
19207889 GCTGAGCATCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
19207953 ACATACGGAGTTCATTCCCAGTCTACGATCGGACCTGACCGAGGGTTGTGGCAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* ** **
19208018 CTCGGGCATGTG-TGGGTGCCGCATTTTTCTTCGTC-AGGGCACCATCACCGGAGCATCATCGGA
66 CTCGAGCATGTGCT-GGTGCCGCATTTTTCTTCGTCGA-GGCACCATCGTCGGAGCATCGCCGGA
* * *
19208081 GAACCTGATCGACGGCATTGGGGTTCCGACGATCGTGGGGGTC-GGGGGGTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
19208145 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
19208210 ACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGTTGCCAGTAGCCAATAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
19208275 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATGTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTT
* * * *
19208340 TCTGCACGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** * * * * *
19208405 AAATTTTAAAAAATCTCAAACCGCAGAACGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATC
453 AAATTTTAAAAAATCCCAAACATCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
19208470 TTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGGCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
19208535 CATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
19208600 CGCATCCCGGCTCTCTAGCCGGCATAGT----GCCCGCCCGTCTGCTCGTTTCGTCGGTTGGGTT
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * ** * * *
19208661 AGCCATACGGAGTTCATTCCTAGTCTAAGATCAAATTG-ATAGAGGGTT-ACAGCAGCAAGATCG
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACAGAGGGTTGA-GGTAGCAAGATCG
* *** * * *
19208724 GTAGCATGCAGAGGGGGACCCGGTTGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAA
777 GTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
* * * *
19208789 CGCCCACACGCTCGTTTTGTGGGTTGACTTAGGCATAC-GAGTTCATTCCTAGTGTAA
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19208846 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * ** * *
19208911 CTCGGGCATGTGCTGGTGCCGAATTTTTCTTCCCCGAGGCACCATCGTCGGAGCATCACCAGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
19208976 ACTTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGTGGGGTTGTGCGCACATGATG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGG-TGTGCGCACATGATG
* * * *
19209041 TACGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACTTCAAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
19209106 ATACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGATGCCAATAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
19209171 ATGGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTT-GCTGAATTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT-TTTAGCTGAATTTTT
* *
19209235 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCC-AAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
19209299 AGGATTTTAAAAAATCCCAAACTTCAGAAAGTTTTAAAAAT-AGTGAAAAATAAAAAACGAGTCG
453 A-AATTTTAAAAAATCCCAAACATCAAAAAGTTTTAAAAATCA-TGAAAAATAGAAAACGAGTCG
* * *
19209363 TCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTAAAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
19209428 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAGT-GATCCACGGC
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA-TCGATCCACGGC
* * *
19209492 TTGCGCATCCCGTCTCTCTGGCCAATGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGG
645 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
*
19209557 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACAGAGGGTTGAGGTAGCAAGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACAGAGGGTTGAGGTAGCAAGAT
* * * *
19209622 CGGTAGCATGCAGAGGGGGACCCAACCGATCCCCGGGTTGCGCAT-CC-CCCCTGTGGCCGACTG
775 CGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
* * * **
19209685 AGCGCCCGTAGGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19209745 GCATACAGAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
19209810 CTCGAGCATGTTCTAGTGCCGTATTTTTCTTTGCCGAGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGCCGGAGA
* *
19209875 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGAGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
19209940 CGATGGGTGCTGGTACTTGGCCCTTACATTGGTCCCCTATCCCTCATCAAACCTAGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19210005 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAATGTTTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
19210070 GGGGACACTTTTTTCAAATGGTCACAAAAACTTGTACACTTTGATTTTTTAGCTGAATTTTTTTT
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGT
* * * *
19210135 GCATGCCAACAAAAATATAAGAATCACATCTACCAAGTTTGGAGCCAAAACTCCTT-CGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAA
*** * * * *
19210199 ATTTTAAAAAATTTTGAACCAT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCT
455 ATTTTAAAAAA-TCCCAAACATCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
19210263 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
19210328 ATTGGCATGGAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACCGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
19210393 GCATCCCATCTCTCTGGCCGATGTAGTGCCTGCCTGCCCGCCTGCTCGTTTCATCGGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* *
19210458 GGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGAACCA-AGGGTTGCAGCT-GCAAGAT-G
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAA-CAGAGGGTTG-AGGTAGCAAGATCG
* * * * * *
19210520 AGCAACACGCAGAGGGGGACCCAACCGATCCCTGGCTTGAGCATCCCGCCCCTTTGGCCGACTGA
777 -GTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGA
* * * * *
19210585 GCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGGTAATTCCCAGTCTAA
841 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19210644 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * ** * * *
19210709 CTTGGGCATGTGCTGGTGCCGCCTTTTTCTTTGTCGGGGCACTATCACCGGAGTATCGTCGAAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * *
19210774 ACCTGATCGACGGCATTGGGGTTCCGGCAATC------G--GGGGGGGTGTACACACATGATGTA
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * **
19210831 TGAAGGGTGCTGGTATTTGGTGCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* ** * *
19210896 ACCCCTTTAAAGAGCATTTTCGATTTTACAGGTTTGCTACTAGTAAG-CATTAAAGTGTCTGAAA
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-AGCCATTAAAGTGTCTGAAA
19210960 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTGTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT-TT
* *
19211025 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
19211090 AATTTTAAAAAATCCCGAACCAT-AAAAA-TTTTCAAAAATCATGAAATATAAAAAACGAGTCGT
454 AATTTTAAAAAATCCC-AAACATCAAAAAGTTTT-AAAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
19211153 CTTGCCATGAAACTTCACATGAAGGCTCAAGGGACCATTGTTTGAATTTACAAGCCATAAAAACG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
19211218 GCATTAGCA--CAGAAAATATGAAGATGTGCCTAAACCTACCAACCACCCTATCGATCCACGGCT
582 GCATTGGCATGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
19211281 TGCGCATCCCGTCTCCCTGGCAGGCGTAGT----GCCCGTCCGTCCGCTCGTTTCGTCGGTTGGC
646 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
19211342 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTA-AGGGTT-ACGGCAGCAGGA
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAAC-AGAGGGTTGA-GGTAGCAAGA
* * * * * * * * *
19211405 TCAGCAGCACACAGAGGAGGACCTGGCTGATCCCCGGCTTGCGCATCCCGCCCCGCTGGTCGACT
774 TCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
*
19211470 GAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19211531 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCCGACCGAGGGTTATGGCAGCAGATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
19211596 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CCAGGGCACCATCATCAGAGCATCGCCAGAG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGA-GGCACCATCGTCGGAGCATCGCCGGAG
* * * * *
19211660 AACTTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGACCGGGGGGGGTGTGCGCACATAATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATG
* **
19211725 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATAACTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
19211790 ACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
19211855 ATCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTGGCTGAATGTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTT
* * * *
19211920 TGTGCATTCCAACAAAAATACAAGGATGACGTCTACCAAGTTTGGGGCCAAAAATCATTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
19211985 ATATTTTTAAAAAATCCTAAACAGT-AAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCG
453 A-AATTTTAAAAAATCCCAAACA-TCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
19212049 TCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAGAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
19212114 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAAACTACCTACCACCCTATCAATCCACGGCT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * *
19212179 TGCGCATCCCGTCTCTCTAGCCGGCATGGTTGCCACTCGCCCGCCTGCCCGTTCGTTTCATCGGT
646 TGCGCATCCCGTCTCTCTGGCCGACGTAG-TG-C-C-CGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * *
19212244 TGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTT-ACGGTAGCA
707 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACAGAGGGTTGA-GGTAGCA
* * * * *
19212308 GGATCGATAGCATGCATAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
771 AGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
19212373 GCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAA
836 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
19212437 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAAGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
19212502 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGCCGGAGA
* ** *
19212567 ACCTGACCGACAGCATTGGGGTTCCGGTGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
19212632 CGGTGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19212697 ACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
19212762 GGGGACACTTTTTTCAAATGGTCAGAAAATCTTTTACACTTCGACTTTTTAGCTGAATTTTTTTT
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTG
* * ** *
19212827 TGCATGCCAACAAAAATACAAGGATAACGTATACCTTGTTTGGGGCCAAAAATCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
19212892 ATTTTAAAAAATCCCAAACCA-CAAAAGGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCT
455 ATTTTAAAAAATCCCAAA-CATCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
19212956 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
19213021 ATTGGCATGCAGAAATATCAAGATGTGC
584 ATTGGCATGCAGAAATATGAAGATGTGC
19213049 TGGTGCCACC
Statistics
Matches: 5220, Mismatches: 660, Indels: 209
0.86 0.11 0.03
Matches are distributed among these distances:
877 27 0.01
878 45 0.01
879 2 0.00
880 4 0.00
881 2 0.00
882 1 0.00
885 1 0.00
886 3 0.00
887 317 0.06
888 1 0.00
890 262 0.05
891 339 0.06
892 410 0.08
893 165 0.03
894 117 0.02
895 315 0.06
896 447 0.09
897 673 0.13
898 142 0.03
899 445 0.09
900 58 0.01
901 4 0.00
902 433 0.08
903 266 0.05
904 145 0.03
905 261 0.05
906 335 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCAAACATCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACAGAGGGTTGAGGTAGCAAGATCGGTAG
CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19211140 original size:26 final size:26
Alignment explanation
Indices: 19211087--19211143 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
19211077 CTCCTTCCGA
* *
19211087 AAAAATTTTAAAAAATCCCGAACCAT
1 AAAAATTTTAAAAAATCACGAAACAT
* * *
19211113 AAAAATTTTCAAAAATCATGAAATAT
1 AAAAATTTTAAAAAATCACGAAACAT
19211139 AAAAA
1 AAAAA
19211144 ACGAGTCGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.60, C:0.12, G:0.04, T:0.25
Consensus pattern (26 bp):
AAAAATTTTAAAAAATCACGAAACAT
Found at i:19211541 original size:26 final size:26
Alignment explanation
Indices: 19211505--19211557 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19211495 GTTGACTTAG
19211505 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19211531 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19211557 G
1 G
19211558 ATCGGACCCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19212441 original size:26 final size:26
Alignment explanation
Indices: 19212411--19212463 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19212401 GTTGACTTAG
*
19212411 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19212437 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19212463 G
1 G
19212464 ATTGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19213515 original size:532 final size:534
Alignment explanation
Indices: 19212509--19213580 Score: 1716
Period size: 532 Copynumber: 2.0 Consensus size: 534
19212499 GGGCTCGAGC
* ** * *
19212509 ATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
1 ATGTGCTGGTGCCACATTTTTCTTCGTGGGGGCACCATCACCGGAGCATCGCCGAAGAACCTGAC
* * * * * *
19212574 CGACAGCATTGGGGTTCCGGTGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGGTGGG
66 CGACAGCATTAGGGTTCCGATGATCGGGGGGGTCCGGGGGCTCTGCGCACATGATGTGCGATGGG
* * *
19212639 TGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
131 TGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
19212704 TAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
196 TAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
19212769 CTTTTTTCAAATGGTCAGAAAATCTTTTACACTTCGACTTTTTAGCTGAATTTTTTTTTGCATGC
261 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGC
** *
19212834 CAACAAAAATACAAGGATAACGTATACCTTGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
326 CAACAAAAATACAAGGATAACGTATACCAAGTTAGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
** *
19212899 AAAATCCCAAACCACAAAAGGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGA
391 AAAATCCCAAACCACAAAACATTTTAAAAATCATGAAAAATAAAAAACGAGTAGTCTTGCCATGA
*
19212964 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
456 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
19213029 GCAGAAATATCAAG
521 ACACAAATATCAAG
* *
19213043 ATGTGCTGGTGCCACCTTTTTCTTTGTGGGGGCACCATCACCGGAGCATCGCCGAAGAACCTGAC
1 ATGTGCTGGTGCCACATTTTTCTTCGTGGGGGCACCATCACCGGAGCATCGCCGAAGAACCTGAC
* *
19213108 CGGCGGCATTAGGGTTCCGATGATC-GGGGGG-CCGGGGGCTCTGCGCACATGATGTGCGATGGG
66 CGACAGCATTAGGGTTCCGATGATCGGGGGGGTCCGGGGGCTCTGCGCACATGATGTGCGATGGG
*
19213171 TGCTGGTACTTAGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
131 TGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
* *
19213236 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACA
196 TAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
19213301 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGC
261 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * *
19213366 CAACAAAAATATAAGGATTACGTCTACCAAGTTAGGGGCCAATAATCCTTTCGAAAAAATTTTAA
326 CAACAAAAATACAAGGATAACGTATACCAAGTTAGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
* * * * *
19213431 AAAATCCCGAACCATAAAACATTTTGAAAATCGTGAAAAATAGAAAACGAGTAGTCTTGCCATGA
391 AAAATCCCAAACCACAAAACATTTTAAAAATCATGAAAAATAAAAAACGAGTAGTCTTGCCATGA
*
19213496 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAATATGGCATTGGCAC
456 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
*
19213561 ACACAAATATGAAG
521 ACACAAATATCAAG
19213575 ATGTGC
1 ATGTGC
19213581 CTAAACCTAC
Statistics
Matches: 492, Mismatches: 46, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
532 407 0.83
533 6 0.01
534 79 0.16
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (534 bp):
ATGTGCTGGTGCCACATTTTTCTTCGTGGGGGCACCATCACCGGAGCATCGCCGAAGAACCTGAC
CGACAGCATTAGGGTTCCGATGATCGGGGGGGTCCGGGGGCTCTGCGCACATGATGTGCGATGGG
TGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
TAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATAACGTATACCAAGTTAGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
AAAATCCCAAACCACAAAACATTTTAAAAATCATGAAAAATAAAAAACGAGTAGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
ACACAAATATCAAG
Found at i:19215606 original size:26 final size:26
Alignment explanation
Indices: 19215576--19215628 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19215566 GTTGACTTAC
19215576 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19215602 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19215628 G
1 G
19215629 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19217111 original size:11 final size:11
Alignment explanation
Indices: 19217097--19217129 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
19217087 ATCGGGGCAC
19217097 CATCACCGGAG
1 CATCACCGGAG
*
19217108 CATCGCCGGAG
1 CATCACCGGAG
19217119 CATCACCGGAG
1 CATCACCGGAG
19217130 AACCTGACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.24, C:0.36, G:0.30, T:0.09
Consensus pattern (11 bp):
CATCACCGGAG
Found at i:19219219 original size:875 final size:869
Alignment explanation
Indices: 19216196--19224677 Score: 10649
Period size: 902 Copynumber: 9.6 Consensus size: 869
19216186 AAATATGAAG
* * * **
19216196 ATGTGCTGGTG-CCAACCTTTTT-TTTGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTG
1 ATGTGCTGGGGTCC-ACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTG
* * * *
19216259 ACCGGCGGCATTAGGGTTTCGATGA-CCGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATG
65 ACCGGCGGCATTGGGGTTCCAATGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATG
*
19216323 GGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-AACTCACACCCC
129 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * *
19216387 CTTAAAAAGCATTTGACATTTTACAGGTTTGTTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGA
194 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
19216452 CACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
259 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
19216517 GCCAACAAAAATACAAGGATTACATCTACCAAGTCTGGGG-CAAAAATCCTTCCGAAAAAATTTT
324 GCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* *
19216581 AAAAAATCTCGAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTAGTCTTGCCAT
389 AAAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTAGTCTTGCCAT
* *
19216646 GAAACTTGACGTGAAGGCGTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
454 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
19216711 ATACACAAATATG-AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
519 ACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
19216775 CGTCTCTCTTGTCGGCGTAGTGCCTGCCCGCCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
584 CGTGTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * **
19216840 GTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCCA-CATGATCAGCAGCATGCAG
649 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG-TAGCAGGATC-GCAGCACACAG
* * * * * * *
19216904 AGGAGGACCTGGCCGATCACCAGCTTGCGCATCCCGCCCCTCTTGTCGACTGAACGCCCGCACGC
712 AGGAGGACCCGGCCGATCCCCGGCTTGCACATCCCGCCCCTCTTGCCGGCTGAGCGCCCGCACGC
*
19216969 TCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGACCGAG
777 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTGGACCGAG
* **
19217033 TGTTGCGGCAGCACATTTTGGGCTCGGGC
841 GGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
19217062 ATGTGCT--GGTCCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGCATCAC
1 ATGTGCTGGGGT-CCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAT---C---G--T---
* * * *
19217125 CGGAGAACCTGACCGGCGGTATTGGGGTTCCAATGATC-AGGGGGCCAGGGGGTGTGCGCAGATG
54 CGGAGAACCTGACCGGCGGCATTGGGGTTCCAATGATCGGGGGGGCCGGGGGGTGTGCGCACATG
*
19217189 ATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
119 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
19217254 CTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCGTTAAAGTGTCT
184 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
19217319 GCAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTTGCGTTTTTAGCTGAATTT
249 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
19217384 TTTTGTGCATGCCAACAAAAATACAAGGATTATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
314 TTTTGTGCATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * *
19217449 AAAAAATTTTAAAAAATCCCGAACCATTAAAAGTTCTAAAAATTATGAAAAATAGAAAGCGAGTA
379 AAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTA
*
19217514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATG-ATTTGACAAGCCATAAAA
444 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT-ACAAGCCATAAAA
*
19217578 ATGGCATTGGCACACACAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGG
508 ATGGCATTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
19217643 CTTGCGCATCCTGTCTCTCTGGTCGGCGTAGTGCTCGCCCGCCCGCTCGTTTTGTCGGTTGGCTT
573 CTTGCGCATCCCGTGTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * *
19217708 AGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGTGGGTTGCGGCAGCAGGATCAG
638 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATC-G
** * * * * *
19217773 CAGCACGTAGAGGAGGACCTGGCCAATCACCAGCTTGCACATCCCGCCCCTCTTGTCGGCTGAGC
702 CAGCACACAGAGGAGGACCCGGCCGATCCCCGGCTTGCACATCCCGCCCCTCTTGCCGGCTGAGC
**
19217838 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCGTAGTCTAAGATC-GAA
767 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-A
* * *
19217902 CTGGATCGAGGGTTACGACAGCACATGCTGGGCTCGGGC
831 CTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
*
19217941 ATGTGCT--GGTCCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
1 ATGTGCTGGGGT-CCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTG
*
19218004 ACCGGCGGCATTGGGGTTCCAATGATC-GGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGG
65 ACCGGCGGCATTGGGGTTCCAATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* *
19218068 CTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
130 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
19218133 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAATTGTCTAAAATGGGGAC
195 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
19218198 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGAATTTTTTTGTGCATG
260 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * *
19218263 CCAAAAAAAATATAAGGATTATGTCTACCAAGTTTGGGGCCAAAACTCATTCCGAAAAAAGTTTA
325 CCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
*
19218328 AAAAATCCCGAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTAGTCTTGCCATG
390 AAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTAGTCTTGCCATG
* *
19218393 AAACTTCATGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
455 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
19218458 CACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCT
520 CACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
19218523 GTGTCTCTGGTCGACGTAGTG-CCGCCCGCCCAGCTAGTTTCGTCGGTTTGCTTAGGC-TACGGA
585 GTGTCTCTGGTCGACGTAGTGCCCGCCCGCCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* ** * * * *
19218586 GTTCATTCCTA-TCTAAGATTTGGGCCGGACCAAGGGTTGCGGTAGTAGGAATCAGTAGCCACAC
649 GTTCATTCCCAGTCTAAGA-TCAGACCGGACCGAGGGTTGCGGTAGCAGG-ATC-GCAG-CACAC
* * *** * *
19218650 AGAGGAGGACCTGGCCGATCAACTAACTTGCACATCCCGCCCCTCTTGCCTGCTGAGC-ACCGCA
710 AGAGGAGGACCCGGCCGATC-CCCGGCTTGCACATCCCGCCCCTCTTGCCGGCTGAGCGCCCGCA
*
19218714 CGCTC-TTTCGTGGGTTGACTTAGGCATACGGA-TTCATTTCCCAGTCTAAAGATC-GACGCGGA
774 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TTCCCAGTCT-AAGATCAGAC-TGGA
*
19218776 -CGAGGGTTGTGGCAGCACATGCTGCGGCTCGTGGC
836 CCGAGGGTTGCGGCAGCACATGCTG-GGCTCG-GGC
* * * *
19218811 ATGTGCTGGGGTCC-CA-TTTTATTCGTCCGGGGTTA-CATCACCAGAG-ATCGTCCGGAGAACG
1 ATGTGCTGGGGTCCACATTTTTCTTCGT-CGGGG-CACCATCGCCGGAGCATCGT-CGGAGAAC-
** *
19218872 CTGACCGATGGCATTGGGGTTCCAATGATCGGGGGGAGCTGGGGGGGTGTGCGCACATGATGTGC
62 CTGACCGGCGGCATTGGGGTTCCAATGATCGGGGGG-GC-CGGGGGGTGTGCGCACATGATGTG-
19218937 CGAT-GGTGCTGGTACTTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
124 CGATGGGTGCTGGTAC-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
19219001 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAA
188 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
19219066 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
253 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
19219131 GTGCATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
318 GTGCATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
19219196 AATTTTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTAGTCT
383 AATTTTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTAGTCT
*
19219261 TGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGC
448 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
19219326 ATTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGACTTGC
513 ATTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
19219391 GCATCCCGTGTCTCTGGTCCACGTAGTGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGTTTAGGCA
578 GCATCCCGTGTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * *
19219456 TACGGAGTTCATTCCTAGTCTAAGATCAGACCCGACCAAGGGTTGCGGTAGTAGGATCAGCAGCA
643 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATC-GCAGCA
* * ** * *
19219521 CACAGAGGAGGACCTGGCCGATCACTAGCTTGCGCATCCCGCCCCTCTTGCCGGCTAAGCGCCCG
707 CACAGAGGAGGACCCGGCCGATCCCCGGCTTGCACATCCCGCCCCTCTTGCCGGCTGAGCGCCCG
19219586 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATATGGAGTTC
772 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC------TA---AG---
* * *
19219651 AATCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCAGCAGCACATGTTGGGCTTGGGC
825 ------A-TC----A--G-ACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
19219710 ATGTGCT--GGTCCCACAATTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTG
1 ATGTGCTGGGGT-CCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTG
* * *
19219773 ACCGGCGGCATTAGGGTTTCGATGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
65 ACCGGCGGCATTGGGGTTCCAATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* *
19219837 GTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAGAACTCACACGCCC
130 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * * *
19219902 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTTTAAAATGGGAAA
195 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
19219967 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATG
260 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
19220032 CCAACAAAAATGCAAGGATTACGTCTACCTAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
325 CCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* *
19220097 AAAAATCCCGAACCGA-AAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCAT
390 AAAAATCCCGAACC-ATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTAGTCTTGCCAT
* * *
19220161 TAGACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
454 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
19220226 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
519 ACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * * *
19220291 TGTCTCTCTGGCCGGCGGAGTGCCCGCTTGTCCGCCTACCCGTTCATTTCATCGGTTGGCTTAGG
584 CGTGTCTCTGGTCGACGTAGTGCCCGC----CCG----CCCGCTCGTTTCGTCGGTTGGCTTAGG
*
19220356 CATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGAACCGAGGGTTGCGGTAGCAGGATCGGCA
641 CATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGTAGCAGGATC-GCA
** * * * * * *
19220420 GCACGTAAAGTG-GGACCCGGTCGATCCCCGGCTTACACATCCCGCCACTCTGGCCGACTGAGCG
704 GCACACAGAG-GAGGACCCGGCCGATCCCCGGCTTGCACATCCCGCCCCTCTTGCCGGCTGAGCG
* * *
19220484 TCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACT
768 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
* * * *
19220549 GGACAGAGGGTTGCGAG-AGCAAATGCTAGGCTC-GAC
833 GGACCGAGGGTTGCG-GCAGCACATGCTGGGCTCGGGC
* * *
19220585 TATATGTGCTGGTG-CCACATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
1 ---ATGTGCTGGGGTCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACC
* * * * * * * *
19220649 TGACCGGTGGTAATAGGTTTCC-ACGATCGGGGGGGCCAAGGGGGTGTGCGCACATGATGTGTGA
63 TGACCGGCGGCATTGGGGTTCCAATGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGA
* * *
19220713 TGGGTGGTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCGAGAACTCACACC
127 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
19220778 CCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGT
192 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
19220843 GACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTGGCTGAGTTTTTTTTTGC
257 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
19220908 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAAAATT
322 ATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* ** * * * * *
19220973 TTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGTGTTGCC
387 TTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTAGTCTTGCC
* *
19221038 ATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTAGAAGCCATAAAAATGGCATTG
452 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * * * *
19221103 GCATGCAGAAATATGAAGATGTGCCTAAACACACCTGCCACCCTATTGATCCACGGCTTGCGCAT
517 GCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
19221168 CCCATGTCTCTGG-CTGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAAGC
582 CCCGTGTCTCTGGTC-GACGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
19221232 ATACGGAGTTCATTCCCTA-TCTAAGATCGGACTGGACCAAGGGTTGCGGTAGCAAGATCGACAG
642 ATACGGAGTTCATTCCC-AGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCG-CAG
* * * * ** ** * * *
19221296 CTCACAGAGGGGGACCCAGTCGATCCCCGGCTTGTGCATCTTGCCCTTCTAGCCGGTTGAGCGCC
705 CACACAGAGGAGGACCCGGCCGATCCCCGGCTTGCACATCCCGCCCCTCTTGCCGGCTGAGCGCC
* * * *
19221361 CGCACGCTCGATTCATGGGTTGTCTTAGGCATACGGAGCTCATTCCCAGTCTTAGAATACGGAGT
770 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC------TA---AG-
* * *
19221426 TCATTCCCAGTCTAAGATTTAACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGC
825 --------A-TC--AG-----ACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
19221487 ATGTGCTGGTG-CCACATTTTTCTTCGTCAGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGA
1 ATGTGCTGGGGTCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA
* * * * * * *
19221551 CCGACAGCATTGGGGTTCCAGTGATTGGGGGGGGCACAGGAGGGTGTGCGCACATGATATCCGAT
66 CCGGCGGCATTGGGGTTCCAATGA-TCGGGGGGGC-C-GGGGGGTGTGCGCACATGATGTGCGAT
* *
19221616 GGGTGATGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
128 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
19221681 CCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGG
193 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
19221746 ACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTG-ATTTTTGTTTTGC
258 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT-TTGTGC
* * * * *
19221810 AAGCCAACAAAAATACAAGCATCACGTCTACCAAGTTTGGGGCCAAAACTGCTTCCAAAAAAATT
322 ATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
** * * *
19221875 TTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCA-TCTTGC
387 TTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT-AGTCTTGC
* *
19221939 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATT
451 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * * *
19222004 GGCACGCAGAAATATGAATATGTGCCTAAACCCACCTGCCACCCTATTGATCCATGGCTTGCGCA
516 GGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
19222069 TCCCGCGTCTCTGG-CTGACATAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAAG
581 TCCCGTGTCTCTGGTC-GACGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
19222133 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAACAAGATCGACAG
641 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCG-CAG
* * * * ** * * * *
19222198 CACACAGAGGGGGACCCAGTCAATCCCCGGCTTGCACATCTTGCCCTTCTGGTCGGCTGACCGCC
705 CACACAGAGGAGGACCCGGCCGATCCCCGGCTTGCACATCCCGCCCCTCTTGCCGGCTGAGCGCC
* * *
19222263 CAG-ACGCTCGATTCATGGGTTGACTTAGGCATACGGAGTTCATTCGCAGTCTAAGCATACGAAG
770 C-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-C---C--AG--T-CTAAG
* *
19222327 TTCATTCCCAGTCTAAGATCAAATGGGACTGAGGGTTGCGGCAGCACATGCTGGCCTCGGGC
825 ---------A-TC--AGA-C---T-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
19222389 ATGTGCT--GGTCCCACATTTTTCTTTGTCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTG
1 ATGTGCTGGGGT-CCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTG
* *
19222452 ACCGGCGGTATTGGGGTTCCAATGATC-GGGGGGCCGGTGGGGTGTGCGCACATGATGTGCGATA
65 ACCGGCGGCATTGGGGTTCCAATGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATG
*
19222516 GGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
129 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
19222581 CTTAAAGAGCATTTCAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
194 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
19222646 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
259 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
19222711 GCCAAAAAAAATACAAGGATTACGTCTACCATGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTT
324 GCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* ** * *
19222776 AAAAAATCTCGAACCGGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCAT
389 AAAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTAGTCTTGCCAT
**
19222841 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATATCATTGGC
454 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
19222906 ACACACAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCT
519 ACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
19222971 CGTCTCTCTGGCCGACGTAGTGCCCACTTGCCCACCCGCCCGCTCATTTCGTCGGTTGGCTTAGG
584 CGTGTCTCTGGTCGACGTAGTG-CC-C--G----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * *
19223036 TATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAG
641 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCG-CAG
* * ** * * * * * * *
19223101 CACGCAGAGGGGGACCCGATCGATCCCTGGCTTACGCATCTCGCCCCTCTAGCCGACTGAGTGCC
705 CACACAGAGGAGGACCCGGCCGATCCCCGGCTTGCACATCCCGCCCCTCTTGCCGGCTGAGCGCC
*
19223166 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGG
770 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGG
* * * * *
19223231 ACTGAGGGTTGTGACAGCACATGCTAGGCTC-AGC
835 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * *
19223265 TATATGTGCTGGTG-CCACATTTTTCTTTGCCAGGGCACCATCGTCGGAGCATCGTCGGAGAACC
1 ---ATGTGCTGGGGTCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACC
* * * * * * *
19223329 TGACCGACGGTAATAGGGTTCC-ACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGTGAT
63 TGACCGGCGGCATTGGGGTTCCAATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * * * *
19223393 GGGTACTGGTACTTGGCCCTTATATTGGACCTCTATCCCTCATAAAACCTCGAAAACTCACACTC
128 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC-C
* *
19223458 CCC-TAAAGAGCATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAA--G---GAAATGGT
192 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
19223517 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGC
257 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * * *
19223582 ACGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAACTCCTTCCAAAAAAATT
322 ATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
** * * * * *
19223647 TTAAAAAATCTTGAACCGTAAAACGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
387 TTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTAGTCTTGCC
* * *
19223712 ATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCAATAAAAATGGCATTG
452 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * * * *
19223777 GCATGCAGAAATATGAAGATGTGCCTAAACGCACCTGCCACCCTATTGATCCACGGCTTGCGCAT
517 GCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
19223842 CCCGTGTCTCTGGTTGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTA
582 CCCGTGTCTCTGGTCGACGTAGT----G----CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * ** * * *** *
19223907 AGCATACAGAGTTCATTCCCAATCTAAGATCAGATTGGACTGAGGGTTACACCAGCAAGATCGAC
639 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCG-C
* * ** * *
19223972 AGCACACAAAAGG-GGACCCAGCCGATCCCCGGCTTGCACATCTTGCCCCTCTGGTCGGCTGAGC
703 AGCACAC-AGAGGAGGACCCGGCCGATCCCCGGCTTGCACATCCCGCCCCTCTTGCCGGCTGAGC
* * * * * * *
19224036 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTTCCAGTCTACGATCAAAT
767 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * *
19224101 TGGACCGAGGGTTACGGGAGCACATGCAGGGCTTGAGC
832 TGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * ** *
19224139 ATGTACTGGTG-CCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCAAAGAACCTAA
1 ATGTGCTGGGGTCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA
**** ** * * *
19224203 CCAATAGCATTGGGGTTCCGGTGATCGGGGGGTCAGGGGGGTGTGCGCACATGATATGCGATGGG
66 CCGGCGGCATTGGGGTTCCAATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* * * *
19224268 TGCTTGTACTTGGCCCTTATATTGGCTCCTTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
131 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
19224333 TAAAGAGCATTTGAGATTGTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACA
196 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
19224398 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGC
261 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * * *
19224463 CAAAAAAAATACAAGGATCACCTCTACCAAGTTTGTGGCCAAAACTCCTTCCAAAAAAATATTAA
326 CAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * *
19224528 AAAATCCCGAACCGTAAAAACTTTTGAAAATCATGAAAAATAGAAAACGAGTAGTCTTGCCATGA
391 AAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTAGTCTTGCCATGA
*
19224593 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
456 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
19224658 GCAGAATTATGAAGATGTGC
521 ACACAAATATGAAGATGTGC
19224678 TGGTGCCACC
Statistics
Matches: 6772, Mismatches: 646, Indels: 385
0.87 0.08 0.05
Matches are distributed among these distances:
864 1 0.00
865 7 0.00
866 40 0.01
867 50 0.01
868 602 0.09
869 66 0.01
870 67 0.01
871 102 0.02
872 143 0.02
873 570 0.08
874 79 0.01
875 692 0.10
876 166 0.02
877 527 0.08
878 362 0.05
879 900 0.13
880 4 0.00
881 5 0.00
882 2 0.00
883 10 0.00
884 5 0.00
885 1 0.00
892 1 0.00
893 5 0.00
894 453 0.07
895 37 0.01
896 7 0.00
897 12 0.00
898 34 0.01
899 561 0.08
900 41 0.01
901 69 0.01
902 965 0.14
903 180 0.03
905 1 0.00
906 1 0.00
908 2 0.00
910 1 0.00
911 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (869 bp):
ATGTGCTGGGGTCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA
CCGGCGGCATTGGGGTTCCAATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
AAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTAGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
ACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TGTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGCAGCACACAGAGGA
GGACCCGGCCGATCCCCGGCTTGCACATCCCGCCCCTCTTGCCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTG
CGGCAGCACATGCTGGGCTCGGGC
Done.