Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 111 of 117
Found at i:19221429 original size:26 final size:27
Alignment explanation
Indices: 19221382--19221438 Score: 89
Period size: 26 Copynumber: 2.1 Consensus size: 27
19221372 TTCATGGGTT
*
19221382 GTCTTAGGCATACGGAGCTCATTCCCA
1 GTCTTAGGAATACGGAGCTCATTCCCA
*
19221409 GTCTTA-GAATACGGAGTTCATTCCCA
1 GTCTTAGGAATACGGAGCTCATTCCCA
19221435 GTCT
1 GTCT
19221439 AAGATTTAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
26 22 0.79
27 6 0.21
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (27 bp):
GTCTTAGGAATACGGAGCTCATTCCCA
Found at i:19222321 original size:26 final size:26
Alignment explanation
Indices: 19222291--19222343 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19222281 GTTGACTTAG
* *
19222291 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19222317 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19222343 G
1 G
19222344 ATCAAATGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19225127 original size:531 final size:533
Alignment explanation
Indices: 19224139--19225208 Score: 1709
Period size: 531 Copynumber: 2.0 Consensus size: 533
19224129 GGGCTTGAGC
* * **
19224139 ATGTACTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCAAAGAACCTAAC
1 ATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGCCAAAGAACCTAAC
* * * *
19224204 CAATAGCATTGGGGTTCCGGTGATCGGGGGGTCAGGGGGGTGTGCGCACATGATATGCGATGGGT
66 CAACAGCATTAGGGTTCCGATGATCGGGGGGTCACGGGGGTGTGCGCACATGATATGCGATGGGT
* * * *
19224269 GCTTGTACTTGGCCCTTATATTGGCTCCTTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
131 GCTTGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
19224334 AAAGAGCATTTGAGATTGTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACAC
196 AAAGAGCATTTGAGATTGTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACAC
*
19224399 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCC
261 TTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCC
*
19224464 AAAAAAAATACAAGGATCACCTCTACCAAGTTTGTGGCCAAAACTCCTTCCAAAAAAATATTAAA
326 AAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATATTAAA
*
19224529 AAATCCCGAACCGTAAAAACTTTTGAAAATCATGAAAAATAGAAAACGAGTAGTCTTGCCATGAA
391 AAATCCCGAACCGCAAAAACTTTTGAAAATCATGAAAAATAGAAAACGAGTAGTCTTGCCATGAA
19224594 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
456 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
19224659 CAGAATTATGAAG
521 CAGAAATATGAAG
* * *
19224672 ATGTGCTGGTGCCACCA-TTTTCTTTGTCGGGGCACCATCACCAGAGCATCGCCAGAGAACCTGA
1 ATGTGCTGGTGCCA-CATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGCCAAAGAACCTAA
* * * * * *
19224736 TCGACGGCATTAGGGTTCTGATGATCGGGGGG-C-CGGGGGTGTGTGCACATGATGTGCGATGGG
65 CCAACAGCATTAGGGTTCCGATGATCGGGGGGTCACGGGGGTGTGCGCACATGATATGCGATGGG
19224799 TGC-TGATACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
130 TGCTTG-TACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * * *
19224863 TTAGAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGAC
194 TTAAAGAGCATTTGAGATTGTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGAC
* *
19224928 ACTTTTTCCAAATGGTTACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTGTGCAT
259 ACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTTGTGCAT
* * * *
19224993 GCCAACAAAAATACAAGGATTACGTCTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAAT-TT
323 GCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATATT
* * * * *
19225057 TAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCAT
388 AAAAAATCCCGAACCGCAAAAACTTTTGAAAATCATGAAAAATAGAAAACGAGTAGTCTTGCCAT
19225122 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
453 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
19225187 ATGCAGAAATATGAAG
518 ATGCAGAAATATGAAG
19225203 ATGTGC
1 ATGTGC
19225209 CTAAACCCAC
Statistics
Matches: 493, Mismatches: 41, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
530 2 0.00
531 337 0.68
532 73 0.15
533 79 0.16
534 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (533 bp):
ATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGCCAAAGAACCTAAC
CAACAGCATTAGGGTTCCGATGATCGGGGGGTCACGGGGGTGTGCGCACATGATATGCGATGGGT
GCTTGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTGTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACAC
TTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCC
AAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATATTAAA
AAATCCCGAACCGCAAAAACTTTTGAAAATCATGAAAAATAGAAAACGAGTAGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAGAAATATGAAG
Found at i:19226749 original size:26 final size:26
Alignment explanation
Indices: 19226712--19226764 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19226702 GTTGGCTTAG
19226712 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19226738 GCATAC-GTAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
19226764 G
1 G
19226765 ATTGGTCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19228881 original size:898 final size:887
Alignment explanation
Indices: 19226707--19229287 Score: 3492
Period size: 898 Copynumber: 2.9 Consensus size: 887
19226697 CGTCGGTTGG
* * * *
19226707 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGTAGTTCATTCCCAGTCTAAGAT-TGGT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACATAGTTCATTCCCAGTCTAAGATCAGAT
* * * * *
19226771 CGGACCGATGGTTGCGGTAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC
66 CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCAC
* * * *
19226836 CAGGGCACCACCGCTGGAGTATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAA
131 CAGGGCACCACCGCT-GA-CATC-CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGA
* *
19226901 GGGGGCC-GACGGGTGCACGCGCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAATGGCC
193 GGGGGCCAG-GGGGTGCACGCGCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
19226965 CCCTATCCTTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
257 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
19227030 TGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
322 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * * *
19227095 TAAAGTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAATAATACAAGGATCACGTCTAA
387 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* ** * * * * *
19227160 CAGGTTTGGGGCAAAAAATCCTGCCGAAAAAATTTTACAAAATCTCGAACCGTAAAAAGTTTTAA
452 CAAGTTTGATGCCAAAAATCCTTCCGAAAAAA-TTTAAAAAATCTTGAACCGTAAAAAGTTTTGA
* * * *
19227225 AAATCGTGAAAAACAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCA
516 AAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
19227290 TTGTATGAATTTACAAGCCATAAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAAC
581 TTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * * * *
19227355 CCACCTACAACTCTATCGATCCACGGCTTGAGCATCCTGTCTCTGTGGCCGGCGTAGTGCCCGCC
645 CCACCTACCACCCTATCGATCCA-TGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * *
19227420 CGTCCACCCGCCCG-TTCATTTTGTCGGTT-GCTTAGGCATACGAAGTTCATT-CCAGTCAAAGA
709 CGCCCACCCGCTCGTTTCA-----TC-GTTGGCTTAGGCATACG-AGTTCATTCCCAGTCTAAGA
* * * * * *
19227482 TAGGACCAGACCGAGGGTTGTGACAGCAGGATTGGCAGCACGCAGAGGGGGACTCGGTCGATCCC
767 TCGGACCAGACCGAGGGTTGAGACAGCAAGATTGACAGCACGCAGAGGGGGACCCAGTCGATCCC
* * ** *
19227547 CGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTTGTTTTGTGGGTTGA
832 CGCGCATCCCGCCCCTCTGGCCGGCTGAGCGACCGCACGCTCATTTTGTGGGTTAA
* * * * *
19227603 CTTTGGGATATGGAATTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCGGA
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-ATAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * *
19227667 TCAGACCGAGTGTTGCAGCCGCACATGCTGGGCCCCGGCATCTGCTGGTG-TCGCATTTTTCTTT
65 TCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCT-GCATTTTTCTTC
* * *
19227731 ACCCGGGCACCA----T--CGT--CGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGAG
129 ACCAGGGCACCACCGCTGACATCCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAG
** * * *
19227788 GGGGCCGAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGTCCC
194 GGGGCC-AGGGGGTGCACGCGCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
** * * *
19227853 CCTATATCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTATAGGTTT
258 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
19227918 GCTACCAGTAGCCATTAAAGTGTTTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGT
323 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
19227983 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
388 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* *
19228048 AAGTTTGATGCCAAAAATCCTTCCAAAAAAACTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAA
453 AAGTTTGATGCCAAAAATCCTTCCGAAAAAA-TTTAAAAAATCTTGAACCGTAAAAAGTTTTGAA
* *
19228113 AATCGTGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCCT
517 AATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
19228178 TGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCC
582 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * *
19228243 ACCTACCACCCTATCGATCCATGACTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGTCCG
647 ACCTACCACCCTATCGATCCATG-CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* *
19228308 CCCTCCCGCTCGTTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATC
711 CCCACCCGCTCGTTTCATC-GTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACC
* * * *
19228373 AGACTGAGGGTTGCAG-TAGCAAGATTGATAGCATGCAGAGGGGGACCCAGTCGATCCCCGGCTT
774 AGACCGAGGGTTG-AGACAGCAAGATTGACAGCACGCAGAGGGGGACCCAGTCGATCCCC-G---
* * *
19228437 ACGCATCGCGCCCCTCTGGCCGGTTGAGCGACCGCACGCTCATTTTGTGTGTTAA
834 -CGCATCCCGCCCCTCTGGCCGGCTGAGCGACCGCACGCTCATTTTGTGGGTTAA
* * *
19228492 CTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACATAGTTCATTCCCAGTCTACGATCAGCT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACATAGTTCATTCCCAGTCTAAGATCAGAT
*
19228557 -AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGCTGCATTTTTCTTCAC
66 CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCAC
* * * *
19228621 CGGGGCACCACCGCTAGAACATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCTGACGATCGC
131 CAGGGCACCACCGCT-G-ACATC-CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGA
*
19228686 GGGGGCCAGGGGGTGCACGCGCATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCC
193 GGGGGCCAGGGGGTGCACGCGCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
19228751 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
258 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
19228816 GCTGCCAGTAGCCATTAAATTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGT
323 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
19228881 ACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTACC
388 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
*
19228946 AAGTTT-TTGGCCAAAAATCCTTCCGAAAAAATATTAAAAAATCTTGAACCGTAAAAAGTTTTGA
453 AAGTTTGAT-GCCAAAAATCCTTCCGAAAAAAT-TTAAAAAATCTTGAACCGTAAAAAGTTTTGA
*
19229010 AAATAGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AGAGGACC
516 AAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG-GGACC
* * ** * *
19229074 ATTGTATTAATTTACAAGCCACAAATTTGGCATTGGCATGCAGAAATATGAAGATGTACCTAAGC
580 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * *
19229139 CCACCTACCACCCTATCGATCCACTGCTTGCGCATCTCGTCTCTCTGGTCGGCGTAGTACCCGCC
645 CCACCTACCACCCTATCGATCCA-TGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
*
19229204 CGCCCACCCGCTCACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
709 CGCCCACCCG----CTCGTTTCATCG-TTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGAT
*
19229269 CGGA-CAGGACCGAAGGTTG
768 CGGACCA-GACCGAGGGTTG
19229288 GGGCAGCACA
Statistics
Matches: 1478, Mismatches: 168, Indels: 72
0.86 0.10 0.04
Matches are distributed among these distances:
882 5 0.00
883 20 0.01
884 64 0.04
885 3 0.00
886 149 0.10
887 365 0.25
888 65 0.04
889 103 0.07
892 1 0.00
893 1 0.00
896 55 0.04
897 67 0.05
898 471 0.32
899 45 0.03
901 3 0.00
902 61 0.04
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (887 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACATAGTTCATTCCCAGTCTAAGATCAGAT
CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCAC
CAGGGCACCACCGCTGACATCCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGG
GGCCAGGGGGTGCACGCGCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
TTTGATGCCAAAAATCCTTCCGAAAAAATTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATC
GTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATCCATGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCAC
CCGCTCGTTTCATCGTTGGCTTAGGCATACGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
GGGTTGAGACAGCAAGATTGACAGCACGCAGAGGGGGACCCAGTCGATCCCCGCGCATCCCGCCC
CTCTGGCCGGCTGAGCGACCGCACGCTCATTTTGTGGGTTAA
Found at i:19229933 original size:717 final size:714
Alignment explanation
Indices: 19228531--19230729 Score: 3049
Period size: 717 Copynumber: 3.1 Consensus size: 714
19228521 AAGCATACAT
* *
19228531 AGTTCATTCCCAGTCTACGATCAG-CTA-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATCGGAC-AGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* ** ** * * *
19228594 ATGTGCTAGTGCTGCATTTTTCTTCACCGGGGCACCACCG-CTAGAACATCACCGGAGAACCTGA
65 ATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATAGTC-GGAGCATCGCCGGAGAACCTGA
* * *
19228658 CCGGCGGCATTAGGGTTCTGACGATCGCGGGGGCC-AGGGG-GTGCACGC-GCATGATGTGCGAT
129 CCGGCGGCATTGGGGTTCCGACGATCGCGTGGGCCGAGGGGTGTG--CGCAG-ATGATGTGCGAT
*
19228720 GGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
191 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
19228785 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAATGAGG
256 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
19228850 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCA
321 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * ** *
19228915 TGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTTTGGCCAAAA-ATCCTTCCGAAAAAATA
386 TGCCAAAAAAAATACAAGGATCACATCTACAAAGTTTGGGGCCAAAACA-CCTTCCGAAAAAATT
* * *
19228979 TTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAAT-AGTGAAAAATAAAAAACGAGTCGTCTTGC
450 TTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGC
* * * **
19229043 CATGAAACTTCACGTGAAGGCTTAGAGGACCATTGTATTAATTTACAAGCCACAAATTTGGCATT
514 CATGAAACTTCACGTGAA-GCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
19229108 GGCATGCAGAAATATGAAGATGTACCTAAGCCCACCTACCACCCTATCGATCCACTGCTTGCGCA
578 GGCATGCAGAAATATGAAGATG-CCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
19229173 TCTCGTCTCTCTGGTCGGCGTAGTACCCGCCCGCCCACCCGCTCACTCGTTTCGTCGATTGGCTT
642 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGC-C-CTCGTTTCGTCGGTTGGCTT
19229238 AGGCATACGG
705 AGGCATACGG
* * *
19229248 AGTTCATTCCCAGTCTAAGATCGGACAGGACCGAAGGTTGGGGCAGCACATGCTGGGCTTGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
19229313 TGTGCTGGTGCCACTTTTTTCTTCATCGGGGCACCATAGTCGGAGCATCGCCGAAGAAGCTGACC
66 TGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATAGTCGGAGCATCGCCGGAGAACCTGACC
19229378 GGCGGCATTGGGGTTCCGACGATCG-GTGGGCCGAGGGGTGTGCGCAGATGATGTGCGATGGGTG
131 GGCGGCATTGGGGTTCCGACGATCGCGTGGGCCGAGGGGTGTGCGCAGATGATGTGCGATGGGTG
*
19229442 CTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
19229507 AAGAGCATTTGAGATTTTACAGGTTTACTGCCGGTAGTCATTAAAGTGTCTAAAATGGGGACACT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
19229572 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
19229637 AAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACACCTTCTGAAAAAATTTTAAAA
391 AAAAAAATACAAGGATCACATCTACAAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAA
* * *
19229702 AATCCCGAA-CGACAAAAAGTTACGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
456 AATCTCGAACCG-TAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
19229766 ACTTCACGTGAAGCCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
520 ACTTCACGTGAAG-CTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
19229831 CAGAAATATGAAGATGCGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
584 CAGAAATATGAAGATGC-CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* ** *
19229896 CTCTCTGGCCGACGTAGTGCTCGCCAACCCGCCCG--CTCGTTTCGTCGGTTGGCTTAGGCATAT
648 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCTCGTTTCGTCGGTTGGCTTAGGCATAC
19229959 GG
713 GG
* *
19229961 AGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
19230026 TGTGCTGGAGCCACATTTTTCTTCACCGGGGAACC-TTGTCGGAGCATCGTCGGAGAACCTGACC
66 TGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATAGTCGGAGCATCGCCGGAGAACCTGACC
* * * ** * * *
19230090 GGCGGCCTTGGGGTTTCGATGATCGGAGGCGTCGGGGGGGGGGGTGTGCGCACATTATGTGCGAT
131 GGCGGCATTGGGGTTCCGACGATC----GCGT-GGGCCGAGGGGTGTGCGCAGATGATGTGCGAT
** * *
19230155 GATTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG-ACTCACACCT
191 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
19230219 CCTTAAAGAGCTTTTCAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGG
256 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
19230284 ACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTTGAGTTTGTAGCTGAATTTTTTTGTGCA
321 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * * * ** * *
19230349 CGCCAACAAAAATGCAAGGATCACATCAACAATGTCTGGGGTTAAAACCCCTTCCAAAAAAATTT
386 TGCCAAAAAAAATACAAGGATCACATCTACAAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTT
* * * ** * *
19230414 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAATAAGTCATTTTGCCA
451 TAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * **
19230479 TGAAACTTCATGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATATCATTGG
516 TGAAACTTCACGTG-AAGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
19230544 CATGCAGAAATATGAAGATGTCCCTAAACCCACCTACTACCCTATCGATCCACGGCTTGCGCATC
580 CATGCAGAAATATGAAGATG-CCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
19230609 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCTGCCCGCTCGTTTTGTTGGTTGGCTTAG
644 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG-CC-CTCGTTTCGTCGGTTGGCTTAG
19230674 GCATACGG
707 GCATACGG
* * * * *
19230682 AGTTCATTCCAAGTGTAAGATTGGACTGGACCGAGGGTTGCGGTAGCA
1 AGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCA
19230730 AAATTGACAG
Statistics
Matches: 1321, Mismatches: 137, Indels: 44
0.88 0.09 0.03
Matches are distributed among these distances:
712 46 0.03
713 119 0.09
716 4 0.00
717 878 0.66
718 200 0.15
719 4 0.00
721 70 0.05
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (714 bp):
AGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATAGTCGGAGCATCGCCGGAGAACCTGACC
GGCGGCATTGGGGTTCCGACGATCGCGTGGGCCGAGGGGTGTGCGCAGATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
AAAAAAATACAAGGATCACATCTACAAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAA
AATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
GAAATATGAAGATGCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCTCGTTTCGTCGGTTGGCTTAGGCATACGG
Found at i:19230883 original size:26 final size:26
Alignment explanation
Indices: 19230834--19230884 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19230824 TTGACTTAGG
*
19230834 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCACTCTAAC
19230860 CATACGGAGTTCATTCCTC-CTCTAA
1 CATACGGAGTTCATTCC-CACTCTAA
19230885 GATCAGACTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.31, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCACTCTAAC
Found at i:19232248 original size:712 final size:711
Alignment explanation
Indices: 19230895--19232307 Score: 2147
Period size: 712 Copynumber: 2.0 Consensus size: 711
19230885 GATCAGACTG
* * **
19230895 GACCGAGGGTTGCAGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGTCACATTTTTCTTCGTCG
1 GACCGAGGGTTGCAGCAGCACATGCTAGGCTCGAGCATCTGCTGGTGGCACATTTTTCTTCACCG
* * *
19230960 AGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCCGACAAACGGGG
66 AGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGACAAACGGGG
* * * *
19231025 GGGCCGGGGGGCGTGTGCGCACATGATGTGCGATGGGTGCTTATACTTGGCCCTTATATTGGCCC
131 GGGACGGGGGGCGTGTCCGCACATGATGTGCGATGGGTGCTGATACTTGGCCCCTATATTGGCCC
* * *
19231090 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGGATTTGAGATTTTACAGGTTT
196 CCTATCCCTCATCAAAACTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
19231155 GTTGCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
261 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGT
* *
19231220 ACACTTCGAGTGTTTAGCTGATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
326 ACACTTCAAGTGTTTAGCTGATATTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
*
19231285 AGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCTCAAAAAGTTTCAAAA
391 AGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAA
** * *
19231350 ATCGTGAAAATTAGAAAATGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATT
456 ATCGTGAAAATTAGAAAACCAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATT
* * * *
19231415 GTATGAATTGACAAGCCATGAAAATGGCATTGGTATGCAGAAATATGAAGATGTGCCTAAACTCA
521 GTATGAATTGACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* * *
19231480 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGC
586 CCTACCACCCTATCGATCAACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCG-
19231545 CCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCAATCCCAGTCTAAGATTGGACCA
650 -C-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCAATCCCAGTCTAAGATTGGACCA
** *
19231610 GACCGAGGGTTGTGGCAGCACATGCTAGGCTCGAGCATCTGCTGG-GGCAGTATTTTTCTTCACC
1 GACCGAGGGTTGCAGCAGCACATGCTAGGCTCGAGCATCTGCTGGTGGCA-CATTTTTCTTCACC
* * * * * * * *
19231674 GGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTAGGGTTTCGACGATC-GG
65 GAGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGACAAACGGG
* *
19231738 GGGGAC-TGGGG-GTGTCCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCC
130 GGGGACGGGGGGCGTGTCCGCACATGATGTGCGATGGGTGCTGATACTTGGCCCCTATATTGGCC
*
19231801 CCCTATCCCTCATCAAAACTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTT
195 CCCTATCCCTCATCAAAACTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
19231866 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAGACTTTTTTCAAAAGGTCACAAAATCTTG
260 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTG
*
19231931 TACACTTCAAGT-TGTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
325 TACACTTCAAGTGT-TTAGCTG-ATATTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* * * *
19231995 CCAAGTTTGGGGCCAAAACTCCTAT-CGAACAAATTTTCAAAAATCTCGAACCGCAAAAAGTTTT
388 CCAAGTTTGGGGCCAAAAATCCT-TCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTC
* *
19232059 GAAAATCGTGAAAA-TAGAAAACCAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGCC
452 AAAAATCGTGAAAATTAGAAAACCAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGAC
* * * *
19232123 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATTTTAAGATGTGCCTAAA
517 CATTGTATGAATTGACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
*
19232188 CCCACCTACCACCTTATCGATCAACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGC
582 CCCACCTACCACCCTATCGATCAACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGC
* ** *
19232253 CCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
647 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCAATCCCAGTCTAA
19232308 TATCGTACCG
Statistics
Matches: 632, Mismatches: 62, Indels: 15
0.89 0.09 0.02
Matches are distributed among these distances:
708 46 0.07
709 1 0.00
710 1 0.00
711 1 0.00
712 354 0.56
713 114 0.18
714 11 0.02
715 104 0.16
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (711 bp):
GACCGAGGGTTGCAGCAGCACATGCTAGGCTCGAGCATCTGCTGGTGGCACATTTTTCTTCACCG
AGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGACAAACGGGG
GGGACGGGGGGCGTGTCCGCACATGATGTGCGATGGGTGCTGATACTTGGCCCCTATATTGGCCC
CCTATCCCTCATCAAAACTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGT
ACACTTCAAGTGTTTAGCTGATATTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAA
ATCGTGAAAATTAGAAAACCAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATT
GTATGAATTGACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCAACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGC
CCGCTCGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCAATCCCAGTCTAAGATTGGACCA
Found at i:19232471 original size:26 final size:26
Alignment explanation
Indices: 19232441--19232493 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19232431 GTTGACTTAG
* *
19232441 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19232467 GCATACAGAGTTCATTCCCCGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19232493 G
1 G
19232494 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19233386 original size:26 final size:26
Alignment explanation
Indices: 19233357--19233426 Score: 140
Period size: 26 Copynumber: 2.7 Consensus size: 26
19233347 TAGGCATACA
19233357 GAGTTCATTCCCAGTCTAAGTATATG
1 GAGTTCATTCCCAGTCTAAGTATATG
19233383 GAGTTCATTCCCAGTCTAAGTATATG
1 GAGTTCATTCCCAGTCTAAGTATATG
19233409 GAGTTCATTCCCAGTCTA
1 GAGTTCATTCCCAGTCTA
19233427 TGATCGGATC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (26 bp):
GAGTTCATTCCCAGTCTAAGTATATG
Found at i:19235614 original size:26 final size:26
Alignment explanation
Indices: 19235584--19235636 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19235574 GTTGACTTAG
*
19235584 GCATACGAAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
19235610 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19235636 G
1 G
19235637 ATCGGACCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19237064 original size:903 final size:890
Alignment explanation
Indices: 19235328--19237740 Score: 3110
Period size: 903 Copynumber: 2.7 Consensus size: 890
19235318 AGGATCACGT
** *
19235328 CTACCACCCTATCGATCCACGCATTGTGCATCCCGTCACTCTGGCCTG-CGTAGTGCCCGTCCGT
1 CTACCACCCTATCGATCCACGC-TTGCACATCCCGTCTCTCTGGCC-GACGTAGTGCCC--CCGT
* * *
19235392 CTGCCTGCTCC-CTCGTTTTATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCG
62 CCGCC-G-TCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
** * * * **
19235456 GATCGGACCGAAGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGTGGGACCCTTTCGATTCCCGG
125 GAT-GGATTGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAGAG-GGGACCCGATCGA-TCCCGG
* * * * *
19235521 CTTGCGCATCCCGCCCCTCTGGTCGGCTAAGCGTCCGCATGCTCGTTTCATGGGTTGACTTAGGC
187 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * *
19235586 ATACGAAGTTCATTCCCTGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATCGGACCTGACCG
252 ATAC-AAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGACCG
* **
19235651 AGGGTTACGGCAGCACATGCTGTGCTCGGGCAGGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCA
315 AGGGTTACGGCAGCACATGCTG-GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
* ** * * * * *
19235716 CCA---TC---G-TTG-GG-GAACCTAATCGGCGCCATTGAGGTTCCGACGATCGGGGGGGACGG
379 CCATCGTCGGAGCTTGCGGAGAACCTAACCGATGGCATTGGGGTTCAGACGATTGGGGGGGCCGG
* * *
19235772 GGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCT
444 GGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * *
19235837 CAT-AAAACTTCGAGAACTCACCCCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCGAG
509 CATCAAACCTT-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * * *
19235901 TAGGCATTAAAGTGTTTGATATGGGGACATTTTTTTCAAATGGTCACAAAATTTTGTACACTTTG
573 TA-GCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * *
19235966 AGTTTTTATCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGT
637 AGTTTTGAGCTGAATTTTTTTGTGCATGCCAACAAAAACAAAAGGATCACGTCTACCAAGTTTGG
* * * **
19236031 CACTAAAAATCCATCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAATTTGTGA
702 CACTAAAAATCCATCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAATTCATGA
* *
19236096 AAAATAGAAAACGAGTAGTCTTGCCATGAATCTTCACGTGAAGGCTTAAGGGACCACTGTATGAA
767 AAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTATATGAA
*
19236161 TTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATAAAGATGTGCCTAAACCCAC
832 TTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATAAAGATGTGCCTAAACCCAC
* * *
19236220 CTACCACCCTATCAATCCACAGCTTGCACATCTCGTCTCTCTGGTCGACGTAGTGCCTACCCGTC
1 CTACCACCCTATCGATCCAC-GCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCC--CCCGTC
* * *
19236285 CGCCCGTCCGCTCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTTATTCCCAATCTAAGATCGGA
63 CG-CCGTCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* ** * *
19236350 TGAAATTGAGGGTTGCGATAGCAGGATCAGTAGCACGTAGAGGGGAACCCGACCGATCCTCGGCT
127 TG-GATTGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAGAGGGG-ACCCGATCGATCC-CGGCT
* * * *
19236415 TGCGCATCCCGACACTCTGGCCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCAT
189 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* *
19236480 ACATAGTTCATTCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTCTAAGATCAGATTAGACCGAG
254 ACA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GACCGAG
* * * *
19236545 GGTTGCGACAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACC
317 GGTTACGGCAGCACATGCT-GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACC
*
19236610 ATCGTCGGAGCATTGCCGGAGAACCTGACCGATGGCATTGGGGTTCAGACGATTGGGGGGGCCGG
381 ATCGTCGGAGC-TTG-CGGAGAACCTAACCGATGGCATTGGGGTTCAGACGATTGGGGGGGCCGG
*
19236675 GGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCT
444 GGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
19236740 CATCAGACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGT
509 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
19236805 AGCTATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
574 AGC-ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
19236870 GTTTTGAGCTGAATTTTTTTGTGCATGCCAACAAAAACAAAATGATCATGTCTACCAAGTTTTGG
638 GTTTTGAGCTGAATTTTTTTGTGCATGCCAACAAAAACAAAAGGATCACGTCTACCAAG-TTT-G
* * * *
19236935 GC-C-AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAA-TCAT
701 GCACTAAAAATCCATCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAG-TTTCAAAATTCAT
* * *
19236997 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATG
765 GAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTATATG
* * *
19237062 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
830 AATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATAAAGATGTGCCTAAACCCAC
* * * *
19237123 CTACCACCTTATCGATCGATGGCTTGCACATCCCGTCTCTCTGGCCAACGTAGTG--CCCG-CCG
1 CTACCACCCTATCGATCCA-CGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGTCCG
* * * * *
19237185 --GCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT-TGGAGTTCATTCCCAGTCTAAGATCAGACCG
65 CCGTCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TG
* * * *
19237247 GATTGAGGGTTGTGGCAGCAGGATCGGTAGCACGTAGACGAGGACTCGGTCGATCCCCGGCTTGC
129 GATTGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAGA-GGGGACCCGATCGAT-CCCGGCTTGC
* * * * *
19237312 GCATCCTGCCCCTCTGGCCGGTTGAGCCCCCGCACGGTCGTTTCGTGGGTTGACTTAGGCATATG
192 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-C
* * ** *
19237377 GAGTTCATTCCCAATCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
256 AAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGACCGAGGGT
*
19237442 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATC
320 TACGGCAGCACATGCT-GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC
* * * *
19237507 G-CTGGAGCTTCGTCGGAGAACCTAACTGATGGCATTAGGGTTCTA-ACGA-TCGGGTGGCCGGG
384 GTC-GGAGCTT-G-CGGAGAACCTAACCGATGGCATTGGGGTTC-AGACGATTGGGGGGGCC-GG
* * *
19237569 GGGGTGTGTGCAGATGATGTGCCATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
444 GGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
19237634 CATCAAACCTTGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTACTGCTAGT
509 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
19237699 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
574 AG-CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
19237741 GGACATCCCG
Statistics
Matches: 1325, Mismatches: 157, Indels: 76
0.85 0.10 0.05
Matches are distributed among these distances:
891 13 0.01
892 315 0.24
893 16 0.01
894 445 0.34
895 38 0.03
898 4 0.00
899 4 0.00
900 3 0.00
902 4 0.00
903 465 0.35
904 16 0.01
905 2 0.00
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.27
Consensus pattern (890 bp):
CTACCACCCTATCGATCCACGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGTCCGC
CGTCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATGGA
TTGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAGAGGGGACCCGATCGATCCCGGCTTGCGCAT
CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAGTT
CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGACCGAGGGTTACGGC
AGCACATGCTGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAG
CTTGCGGAGAACCTAACCGATGGCATTGGGGTTCAGACGATTGGGGGGGCCGGGGGGTGTGTGCA
CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCATTAAAGTG
TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAA
TTTTTTTGTGCATGCCAACAAAAACAAAAGGATCACGTCTACCAAGTTTGGCACTAAAAATCCAT
CCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAATTCATGAAAAATAGAAAACGA
GTAGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTATATGAATTTACAAGCCATAA
AAATGGCATTGGCACGCAAAAATATAAAGATGTGCCTAAACCCAC
Found at i:19238001 original size:26 final size:26
Alignment explanation
Indices: 19237965--19238020 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
19237955 TGGGTTGACT
*
19237965 TAAGCATACGGAGTTCATTCCCAGTG
1 TAAGCATACGGAGTTCATTCCCAGTC
19237991 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
19238017 TAAG
1 TAAG
19238021 ATCGGACTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:19240308 original size:884 final size:882
Alignment explanation
Indices: 19237784--19240525 Score: 4126
Period size: 899 Copynumber: 3.1 Consensus size: 882
19237774 GCCCACCCGT
* *
19237784 CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAAC
1 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAG-AC
* * *
19237848 CGAGGGTTACGGTAGTAGGATCGGCAGCATGCAGAGGGGGACCCGACCGATCTTCGGCTTACGCA
65 CGAGGGTTACGGTAGTAGGATC-GCAGCATGCAGAGGGGGACCCGGCCGATCTCCGGCTTGCGCA
*
19237913 TCCCATCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAAGCATACGGAG
129 TCCCATCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAG
* * *
19237978 TTCATTCCCAGTGTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGT
194 TTCATTCCCAGTGTAAGCATACGGAGTTCATT-TCAGTCTAAGATTGGA-TGGACTGAGGGTTGC
19238043 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGAGGCACCATCGTC
257 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGAGGCACCATCGTC
* * *
19238108 GCAACATCGTCGGAGAACCTGACCGACGGCATTTGGGTTCCGGTGATCGAGGGGGCCGAGGGGGT
322 GCAGCATCGTCGGAGAACCTGACCGACGGCATTTGGGTTCC----A-CGA-----TCGGGGGGGT
*
19238173 GTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
377 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
19238238 AACCTCGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
442 AACCTCGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
19238303 TTAAAGTGTTTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTTGAGTTTT
507 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTT
* *
19238368 TGGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
572 TGGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGTATCACATCTACCAAGTTTGGGGCCAA
* * * * *
19238433 AAGTCCTTCCGAAAAAATTTAAAAAAATCCCGAACTGGAAAAAGTTTCAAAAATCATAAAAAATA
637 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATA
* *
19238498 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACA
702 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACA
* *
19238563 AGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
767 AGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
*
19238628 CGATCCACGGCTTGCGCATCACGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
832 CGATCCACGGCTTGCGCATCACGTCTCTCT-GCCGACGTAGTGCCCGCCTGC
19238680 CCGCTCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCA
1 CCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCA
* * *
19238745 AACCGAGGGTTACGGTAGTAGGATTGGCAGCATGTAGAGGGGGACCCGAG-CGATCTCCGGCTTG
62 GACCGAGGGTTACGGTAGTAGGA-TCGCAGCATGCAGAGGGGGACCCG-GCCGATCTCCGGCTTG
* * *
19238809 CGCATCCCATCCCTCTGGCCAGCTAAGCGCCCGTACGCTCGTTTTGTGGGCTGACTTAGGCATAC
125 CGCATCCCATCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATAC
* * *
19238874 GGAGTTCATTTCCCAGTGTAAGCATACGGAGTTCATTCTCAGTCTAAGACTGGACCGGACCGAGG
190 GGAGTTCA-TTCCCAGTGTAAGCATACGGAGTTCATT-TCAGTCTAAGATTGGA-TGGACTGAGG
* *
19238939 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTATATTTTTCTTCATCGAGGCACCA
252 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGAGGCACCA
***
19239004 TCGTCGCAGCATCGTCGGAGAACCTGACCGACGGCATTTGGGTTCTGGTGATCGGGGGGGCCGGG
317 TCGTCGCAGCATCGTCGGAGAACCTGACCGACGGCATTTGGGTTC-CACGATC------G--GGG
* *
19239069 GGGTGTGCGCACATGATGTGCGATGGGTTCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
373 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
19239134 ATCAAACCTCGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTATGCTGCCAGTA
438 ATCAAACCTCGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
19239199 GCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTCAG
503 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG
*
19239263 TTTTTGGCTGAATTGTTTTGTGCATGCCAACAAAAATAAAAGTATCACATCTACCAAGTTTGGGG
568 TTTTTGGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGTATCACATCTACCAAGTTTGGGG
* *
19239328 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
633 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAA
19239393 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATT
698 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATT
* *
19239458 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATATGCCTAAACCCAACTACCACC
763 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
**
19239523 CTATCGATCCACGGCTTGCGCATCTTGTCTCTCTAGCCGACGTAGTGCCCGCCTGC
828 CTATCGATCCACGGCTTGCGCATCACGTCTCTCT-GCCGACGTAGTGCCCGCCTGC
* * * * *
19239579 CCGCTCGTTTCGTCAGTCGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATGAAACCAGACT
1 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACC
* * ** ** *
19239644 GAAGGTTGCGACAGTAGGATCGCAGCATGCAGAGAAGGACCTGGCCGATCTCCGGCTTGCGCATC
66 GAGGGTTACGGTAGTAGGATCGCAGCATGCAGAGGGGGACCCGGCCGATCTCCGGCTTGCGCATC
* * * * *
19239709 CC-GCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGT
131 CCATCC-CTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGT
* * *
19239773 TCATTCCCAGTGTAAGCATACGGAGTTCATTTCGAGTCTAAAATTGGATAGGACTGAGGATTACG
195 TCATTCCCAGTGTAAGCATACGGAGTTCATTTC-AGTCTAAGATTGGAT-GGACTGAGGGTTGCG
* * * *
19239838 ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGAGGCACCATCATCG
258 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGAGGCACCATCGTCG
*
19239903 GAGCATCGTC-GAGAACCTGACCGACGGCATTTGGGTTCCACGATCGGGGGGGTGTGCGCACATG
323 CAGCATCGTCGGAGAACCTGACCGACGGCATTTGGGTTCCACGATCGGGGGGGTGTGCGCACATG
* *
19239967 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAGACCTCGAGAA
388 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
** * * * * *
19240032 CAAACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGTTGTCAGTGGCCATTAAAGTGTCT
453 CTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
19240097 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTG
518 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTG
*
19240162 TTTTGTGGATGCCAACAAAAATACAAGTATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCG
583 TTTTGTGCATGCCAACAAAAATACAAGTATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * *
19240227 AAAGAATTTTAAAAAATCCCAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
648 AAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * * * *
19240292 ATCTTGCCATGAAACTTCACGTGAAGGCCTAAAGGACCATTTTATGAATTTACAAGCCATTAAAA
713 GTCTTGCCATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
19240357 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
778 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
19240422 TTGCGCATCCCGTTTCTCTGGCAAGCGTAGTGCCCGCCCGCTCGCCTAC
843 TTGCGCATCACGTCTCTCTGCCGA-CGTAGTGCCCG--C-CT-G----C
19240471 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
19240526 GGATCAGACC
Statistics
Matches: 1685, Mismatches: 130, Indels: 66
0.90 0.07 0.04
Matches are distributed among these distances:
883 152 0.09
884 322 0.19
885 1 0.00
886 1 0.00
887 2 0.00
888 1 0.00
891 4 0.00
892 83 0.05
893 123 0.07
894 95 0.06
895 71 0.04
896 3 0.00
897 2 0.00
898 1 0.00
899 333 0.20
900 333 0.20
901 158 0.09
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (882 bp):
CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACC
GAGGGTTACGGTAGTAGGATCGCAGCATGCAGAGGGGGACCCGGCCGATCTCCGGCTTGCGCATC
CCATCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTT
CATTCCCAGTGTAAGCATACGGAGTTCATTTCAGTCTAAGATTGGATGGACTGAGGGTTGCGGCA
GCACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGAGGCACCATCGTCGCAG
CATCGTCGGAGAACCTGACCGACGGCATTTGGGTTCCACGATCGGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTGTTT
TGTGCATGCCAACAAAAATACAAGTATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
AAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCACGTCTCTCTGCCGACGTAGTGCCCGCCTGC
Found at i:19244078 original size:26 final size:26
Alignment explanation
Indices: 19244042--19244094 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19244032 GTTGACTGAG
*
19244042 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19244068 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19244094 G
1 G
19244095 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19244962 original size:26 final size:26
Alignment explanation
Indices: 19244933--19244982 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19244923 GTTGACTTAG
19244933 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19244959 GCATACGGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
19244983 GAGATCGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19245606 original size:900 final size:901
Alignment explanation
Indices: 19240496--19250162 Score: 11035
Period size: 900 Copynumber: 10.9 Consensus size: 901
19240486 GTTGGCTTAG
* * * * *
19240496 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCTACGGTTGTGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTG-CGCAGCACATGCTGGG
* * * * ** *
19240561 CTCGGGCATGTGCTGGTGCCACTTTTTTCTTTGTCGGGGCACCATTGTCGGAGCAT-TGCTGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
19240625 ACCTAATCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGTTGGGGTGTGCGCACATGATGT
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAG--GGGGTGTGCGCACATGATGT
*
19240689 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
19240754 CACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTT-CTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19240818 CGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-AGGTTTTTAGCTGAATTGTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTT
19240882 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
19240947 AAATTTTAAAATATCCCGAACTGCAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGT-GTC
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
19241011 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19241076 CATTGGCACATAAAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
581 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
19241141 CGCATCCCGTCTCTCTGGCCGACGCAGT--------GCCCGCCCGCCCGCTCGTTTCGTCGGTCG
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * *
19241198 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT-GGAAGCAGACTGAAGGTTGCGGCAGCAGG
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG-ATCAGACCGAGGGTTGCGGCAACAGG
* * ** * *
19241262 ATC-ACAGCATGCAGAGAGGGACCTAGCCGAT-CTCCGGCTTACGCATCCCGCCTCTCTGGCCGG
775 ATCGACAGCACGCAGAGGGGGACCCGGCCGATCCT-CGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
19241325 CTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
839 CTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * * * * *
19241388 GCATACAGAGTTCATTCCGAATCTAAAATCGAATAGGACTGAGGATT-CGGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGC-GCAGCACATGCTGGG
* *
19241452 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGAGGCACCATCGTCGGAGCATCACC-GAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG-GGCACCATCGTCGGAGCATCACCGGAGA
* * ** *
19241516 ACCTGACCGGCGACAATT-GGGTTCCGACGATTGGGGGGGCCTTTGGGGTGTGCACACATGATGT
129 ACCTGACCGGCGGC-ATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGT
* * **
19241580 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAGACCTCGAGAACAAA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
19241645 CACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGTTGTCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19241710 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTGTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
19241775 GTGCATGCCAACAAAAATACAAGTATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAG
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** * * *
19241840 AATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCT
452 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
19241905 TGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTTTATGAATTTACAAGCCATTAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
19241970 ATTGGCACGTCGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
19242035 GCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCACCCTCCCGCCCGCTCGTTTCGTCGGTTGG
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * **
19242100 CTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGCAGCAGTAGGAT
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAACAGGAT
* * * * * *
19242165 CGACAGCACGTAGAGGGGGACTCGGCCTATCCTCGACTTGCGCATCCTGCCCCTCTGGCCTGCTG
777 CGACAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
19242230 AGCGCTCGTACGCTCATTTTATGTGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
842 AGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * *
19242290 GAATATGAAGTTCGTT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGC-GCAGCACATGCTGGG
* **
19242354 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAAGGCACCATCGTCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGTCGGAGCATCACCGGAGA
* * * ** *
19242419 AACTGACCGGCGGCATTTGGGTTTCGGTGATC-GGGGGGCCGGAGGGGTGAGTGCGCACATGATG
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--AGGGG-GTGTGCGCACATGATG
* ** * *
19242483 TGCGATGGGTGCTCGTACTTGGCTGTTATTTTGGCCCCCTATCCCTCATCAAACCTCGAGATCTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
19242548 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
19242613 ATTGGGACACCTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
19242678 TGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCTAGTTTGGGGCCAAAA-TCCTTCCGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
19242742 AAATTTTAAAAAATCTCGAACCACAAAAATTTTCAAAAATCATAAAAAATAGAAAATGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
19242807 TTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** * *
19242872 CATTGCCATGTAGAAATAGGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTG
581 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
19242937 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCTCGCCCGCTCGTTTCGTCGGTTG
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* ** * * **
19243002 GCTTAGGCATACAGAGTTCATTCCTGGTCTAAGATCAGA-CTGGAATGAGGGTT---G---C---
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGGGTTGCGGCAACAGG
* * *
19243057 A--G-CAGCACGCAGAGGGGGACCCGGCCGATCCTCAGCTTACGCATCCCGCCCCTCTGGCCGAC
775 ATCGACAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
19243119 TGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATA-TGTAGTTCATTCCCAGTCTAA
840 TGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAA
* * * * *
19243181 GCATACGGAGCTCATTCCTAGTCTAAGATCAGATTGGACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCG-CAGCACATGCT-GG
* * *
19243246 GCCTCAGGCATGTGCTGGTGCCCAGCATTTTTCTTTCGTCGGGGCACCATCGCCGGAGCAT--GC
64 G-CTCGGGCATGTGCTGGTG-CC-GCATTTTTC-TTCGTC-GGGCACCATCGTCGGAGCATCACC
* * * *
19243309 GCGAAAACCTGACCGAACGGCAATTGGGGTT-CTAGCGATC-----AG---GGGGGTGTGCGCAC
124 G-GAGAACCTGACCG-GCGGC-ATTGGGGTTCCGA-CGATCGGGGGGGCCAGGGGGTGTGCGCAC
*
19243365 ATGATGTGCGATGGGTTGCTGGTACTTGGCCGCTGTAT-TT--ACCCCTATCCCTCATC-AACCT
185 ATGATGTGCGATGGG-TGCTGGTACTTGGCC-CT-TATATTGGCCCCCTATCCCTCATCAAACCT
* * * * *
19243426 TGAGAACTCA-AGCCCCCTT-AAGAGCATTT-ATATTTTGCAGATTATGCT-CCAGTAGGCAATT
247 CGAGAACTCACA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTT-TGCTGCCAGTA-GCCATT
** * *
19243487 AAAGTGTCT-AAATAAGGA-A--TTTTTCAAA-GGT--CAAAATCTTGTAAACTTGTGAG-TTTT
309 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-CGAGTTTTT
* * *** ** * * *
19243544 AGCTGAATTTTTTTGTGCATGCAAATACATTTTGTAAGGATCA-ATCTACCAGGTTTGGTG--AA
373 AGCTGAATTTTTTTGTGCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * ** * * *
19243606 AATTCTTTTTGAAAACA-TTTAAAAAAT-CCGAACTCG-TAAAAGTTTCAAAAATCACGAAAAAT
437 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC-CGCAAAAAGTTTCAAAAATCATGAAAAAT
* * * *
19243668 AAAAAACGAGTCATCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGCATGAATTTAC
501 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * *
19243733 AAGCCATAAAAATGGCATTGGCAGATAGAAATACGAAGATGTGCATAAAGCCACCTACCACCCTA
566 AAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * **
19243798 TCGATCCACGACTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCTGCCCACCCGCTTGCCCGC
631 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGC
*
19243863 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGG
696 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGG
* * * *
19243928 GTTGCGGCAACAGGATCGACAGCACGCAGAGGGGGGCCCGGCCGATCCCCGGCTTACGCATCCCA
761 GTTGCGGCAACAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCG
* * * ** * **
19243993 CCTCTCTGGCCGG-TAGAGC-ACCGTACATTCGTTTTGTGGGTTGACTGAGGCATATGGAGTTCA
826 CCCCTCTGGCCGGCT-GAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCA
19244056 TTCCCAGTCTAA
890 TTCCCAGTCTAA
* * *
19244068 GCATACGGAGTTCATTCCTAGTCTAAGATTGGATCGGACTGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCG-CAGCACATGCTGGG
* * * * *
19244133 CTCAGGCATGTGCTGCTGCCGCATTTTTCTTTGCTGGGGCACCA---TC---G-----CCGAAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-TCGGGCACCATCGTCGGAGCATCACCGGAGA
* * *
19244187 ACCTGACCGGCGGCATTAGGGTTCTGACGATCGGGGGGGCCAGGGGGTGTGAGCACATGATGTGC
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
*
19244252 GATTGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
** * * * * *
19244316 CCCCCTCGAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCTATCAAAGTGTCTCAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19244381 GGGACACATTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
19244446 GCATGCCAACAGAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
19244511 TTTTAAAAAAGCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
19244576 CCATGAAACTTCAAGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAAAGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
19244641 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCTCCTACCACCTTATCGATCCATGGCTTGCGC
584 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
19244706 ATCCCGTCTCTCTGGCAGGCGTAGTGCCCGCCTGTCCGCCCGCCCGCTCGTTTGGTCAGTTCGCT
649 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * *
19244771 TAGGCATACAGAGTTCATTCCTAGTCTAAGATTGGA-CTGGACCGAGGGTTGTGGCAATAGGATC
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGGGTTGCGGCAACAGGATC
* * * * ** ** * **
19244835 GACAGCATGCAAAAGGGTACCCGATCGATCCTCGGCTTATGCATCCCGCCCCTGTGGCTTGCTGA
778 GACAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
19244900 GCACCCACACGCTCGTTCTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
843 GCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
19244959 GCATACGGAGTTCATTCCCAGTCTGAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGC-GCAGCACATGCTGGG
* * * * * * * *
19245024 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCAGGGTACCACCGTCAGACCATCACCAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGTCGGAGCATCACCGGAGA
* * *
19245089 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGTGGGGCCAGGGGGTGTGCGTACATGATGTGC
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
* * *
19245154 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCGAGAAATCATA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19245219 CCCCC-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
19245283 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTTTTTT-T
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * * * **
19245347 -TATGCAAATAAAAATACAAGGATCATGTCTACCTAGTTTTGGGCCAAAAATCCTTTTGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
19245411 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAGGAGTCGTCTTG
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * *
19245476 GCATGAAGCTTCATGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * **
19245541 TGGGACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATAGCTTGCGC
584 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *** * *
19245606 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTTTGCCTGCCCGTTCGTTTCGTCGGTTGGCT
649 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * * * * *
19245671 TAGGCGTACGGCGTTCATTCCCAGTCTAAGATTGGACCAGAGCGATGGTTACGGTAGCAGGAT-T
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAACAGGATCG
* * *
19245735 AGCAGCACACAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
779 A-CAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
19245800 GCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
843 GCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * *
19245859 GCATACGAAGTTCATTCTCAGTCTAAGATTGGATCAGACCGAAGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCG-CAGCACATGCTGGG
** ** *
19245924 CTCGGGCATGTGCTATTGCCGCATTTTTCTTCGTCAGGGCACCATCACCGGA-CATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGTCGGAGCATCACCGGAGA
** * *
19245988 ACCTGACCGGTAGCATTGGGGTTCC-ACCGATC-GGGGGGCCGGGGGGTTGTGCACACATGATGT
129 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCAGGGGG-TGTGCGCACATGATGT
* * *
19246051 GCAATGGGTACTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
19246116 TACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTCGCTGCCAGTTGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *** * *
19246181 CGAAAACACTTTTATCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
19246246 GTGCATGCCAAC-AAAAT-C----AT---GCCTACCAAGTTTAGGGTCAAAACTCCTTCCAAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** *
19246302 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
19246367 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGGT-TGAATTTATAAGCCATAAAAATGG
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT-GTATGAATTTACAAGCCATAAAAATGG
* ** *
19246431 CATTGGTATGTAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
19246496 CCCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCC-CACCGCCCGCCCGTTCGTTTCGTCAGTT
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC-CCGCCCGCCCGCTCGTTTCGTCGGTT
* ** * * **** *
19246560 GGCTTTGGCATACGGAGTTCATTCCCAGTCTAAGATCCTATCAAACCGAGGGATGCGATGGCAAG
710 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAACAGG
* * * ** * * * * *
19246625 ATCAATAGCACGCAGAGGGGGACCTGATCGATCC-CTGGCTGGTGCATCCCACCTCTCTGGTCGG
775 ATCGACAGCACGCAGAGGGGGACCCGGCCGATCCTC-GGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * * * **
19246689 -TAGAGC-ACTGTACGTTCGTTTTGTGGGTTAACTGAGGCATATGGAGTTCATTCCCAGTCTAA
839 CT-GAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
19246751 G-AT-C--AG---------A--C-----T---A---GACCGAGGGTTGCG-ATTGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGCA--GCACATGCTGG
* * *
19246789 GCTCGGGCATGTGCTGGGGCCGTATTTTTCTTCGTCGGG-------G-C--ACCATCACCGGAGA
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
19246844 ACCTAACCGGTGGCATTGGGGTTCC-AGCGATCGGGGGGGCCGAAAGGGGGGTGTGCACTCATGA
129 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCC---A-GGGGGTGTGCGCACATGA
* * * * * *
19246908 TGTCCGATTGGTGCTGGTACTTGGCCGTTATATTGGCCCCCTATCCCTCACCAAACCTTGAGAAT
189 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
19246973 TCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTG
254 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
19247038 AAATGGGGACACTTTTTTCAAATGGTCAAAAAAATCTTGTACACTTTGAGTTTTTCGCTGAATTT
319 AAATGGGGACACTTTTTTCAAATGGTC-ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
19247103 TTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCG
383 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* *
19247168 -AAAAATTTTAAAAAA-CCCTGAA-C-C-----G---CAAAAATCGTGAAAAATAGAAAATGAGT
448 AAAAAATTTTAAAAAATCCC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
19247221 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAC
512 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
19247286 ATGGCATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCAACCAC
577 ATGGCATTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * * * ** *
19247349 AGCTTACGCATCTCGTGTCTCTCGTCGGCATAGTGCCTGCCCGCCCTTCTGCCCGCTCGTTTCGT
640 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * * * * ***
19247414 CGGTTGGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCAATA
705 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCA
* * * * * *
19247479 GCAGGATCGACAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGTGCATCCCGTCGCTCTGG
770 ACAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGG
* * *
19247544 CCGGCTGAGCACCCGCACACTTGTTTTGTGGGTTGACTTAGGCATAC-GAAGTTCATT-CCAGTC
835 CCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTC
19247607 TAA
899 TAA
* * * * * *
19247610 GCAAACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGCTGTTGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTG-CGCAGCACATGCTGGG
*
19247675 CTTGGGCATGTGCTGGTGCCGCA---TT-TT--T-------C-T--TC---G--T---CGGAGAA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATCGTCGGAGCATCACCGGAGAA
* * *** * *
19247716 CCTGACCGGTGGCATTGGGGTTTCGGTAATCGGAGGGACCAAGAGGGGGTGTGCGCACATGATGT
130 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC---AGGGGGTGTGCGCACATGATGT
* * * *
19247781 GGGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCAAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
19247846 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19247911 AGGGGACAC-TTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTCTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * **
19247975 GTGCATTCCAACAAAAATACAAGGATCACATCTAATAAGTTTGGGGCCAAAACTCCTTCCG-AAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** *
19248039 AATTTTAAAAAA-CCCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATC
452 AATTTTAAAAAATCCC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
19248103 TAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
19248168 CATTGGCATGA-AGAAATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCCAACCATGGCTT
581 CATTGGCA-CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*** * * *
19248232 GCGCATCCCGTCTCTCTCATCGGCGTAGTGCCCGTCCGCCCGTCCGCCCACTCGTTTCGTCGGTT
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * * * *
19248297 GGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCAAG
710 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAACAGG
** * * * * *
19248362 ATCGGTAGCACGCAGAGGGGGGCTCGACCGATCC-CTAGCTTGCGCATCCCGCTCCTCTGGCCGG
775 ATCGACAGCACGCAGAGGGGGACCCGGCCGATCCTC-GGCTTGCGCATCCCGCCCCTCTGGCCGG
** ** * *
19248426 CTGAGCGCCCGCACGCTTATTTCATGGGTTGACTTAGCCATACAGAGTTCATTCCCAATCTAA
839 CTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
19248489 GCATACGGAGTTCAGTCCCAGTCTAAGATCGGATCGGACCGAAGGCTATG-GCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCG-AGGGT-TGCGCAGCACATGCTGG
*
19248553 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGTCGGAGCATCACCGGAG
* * *
19248618 AACCTGACAGGCGGCATTAGGGTTCCGACGATTGGGGGGGCCGAGGGGGGTGTGCGCACATGATG
128 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-A-GGGGGTGTGCGCACATGATG
* * * *
19248683 TGCAATTGGTACTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
19248748 ACACCCCTTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * * * *
19248813 ATGGGGATAGTTTTTTCACATGGTCACAAAATCTTATACAGTTTGAGTTTTTAGCTGAATGTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
**
19248878 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** *
19248943 AAATTTTCAAATATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* **
19249008 TTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATTCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
19249073 CATTGGCACATAGAAATATGAAGATATGCCTAAAGCCACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** *
19249138 TGCATCCCGTCTCTCTGGCCGGCG-AGT--------ACCCGTTCGCCCGCTCGTCTCGTCGGTTG
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * **
19249194 GCTTTGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCAGCAACAAAA
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAACAGGA
* * * * ** * *
19249259 TCAACAGCAAGCAGAGGGGGACCCGGTCGATCCCCAACTTGCGCATCCTGCCCCTCTAGCCGGCT
776 TCGACAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * * * *
19249324 GAGTGCCCACACACTCGTTTCGTGGGTTTACTTAGGGATACGGAGTTCATTCCCAGTC---
841 GAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
19249382 -C--A---AG---------A-TC--AGA-C---T-GGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCG-CAGCACATGCTGGG
* * *
19249424 CTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGAACCA---TC---GC-T----GGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGTCGGAGCATCACCGGAGA
* * * **
19249478 ACCTGACCGACGGCATTAGGGTTCCCACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTG
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CCAGGGGGTGTGCGCACATGATGTG
* * * *
19249543 CGATGGGTGGTGCTACTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
19249608 ACCCCCTTAAAAATCATTTGAGATTTTACAGGTTTGCTGGCAGTAACCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * *
19249673 AGAGAAACTTTTTTCGAATGGCCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
19249738 TGCATACCGACAAAAATAAAAAGATCACGTCTACCAAGTTTGGGGCCACAAA-TCCTTCTGAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTCCGAAAA
* *
19249802 AATTGTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
19249867 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** * * ** *
19249932 ATTGGCATGCAGAAATTTGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCTTGGCTTAC
582 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
19249997 GCATCCCGTCTCTCTGGCCGGCGTAAT--------GCCCGCCCGCCCGCTTGTTTCATCGGTTGG
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * ** ** *
19250054 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTAGACTGAGGGTTACGATAGTAGTA
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGGGTTGCGGCAACAGGA
* * *
19250118 TCGACAGCACTCAGA-GGGGACCCGACCGATCC-CTGACTTGCGCAT
776 TCGACAGCACGCAGAGGGGGACCCGGCCGATCCTC-GGCTTGCGCAT
19250163 AAGTTTAGGG
Statistics
Matches: 7543, Mismatches: 993, Indels: 512
0.83 0.11 0.06
Matches are distributed among these distances:
855 1 0.00
856 40 0.01
857 10 0.00
858 474 0.06
859 446 0.06
860 190 0.03
861 55 0.01
862 6 0.00
863 4 0.00
864 3 0.00
865 3 0.00
866 55 0.01
867 4 0.00
868 120 0.02
869 39 0.01
870 250 0.03
871 47 0.01
872 13 0.00
873 2 0.00
874 3 0.00
875 8 0.00
876 266 0.04
877 53 0.01
878 417 0.06
879 170 0.02
880 39 0.01
881 8 0.00
882 26 0.00
883 21 0.00
884 6 0.00
885 97 0.01
886 93 0.01
887 129 0.02
888 111 0.01
889 29 0.00
890 329 0.04
891 463 0.06
892 337 0.04
893 512 0.07
894 25 0.00
895 4 0.00
896 206 0.03
897 30 0.00
898 25 0.00
899 121 0.02
900 648 0.09
901 114 0.02
902 408 0.05
903 506 0.07
904 382 0.05
905 192 0.03
906 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATCGTCGGAGCATCACCGGAGAAC
CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAACAGGATCGAC
AGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:19245870 original size:26 final size:26
Alignment explanation
Indices: 19245833--19245885 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19245823 GTTGACTTAG
19245833 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19245859 GCATAC-GAAGTTCATTCTCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
19245885 G
1 G
19245886 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19248494 original size:26 final size:26
Alignment explanation
Indices: 19248464--19248515 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19248454 TTGACTTAGC
*
19248464 CATACAGAGTTCATTCCCAATCTAAG
1 CATACAGAGTTCAGTCCCAATCTAAG
* *
19248490 CATACGGAGTTCAGTCCCAGTCTAAG
1 CATACAGAGTTCAGTCCCAATCTAAG
19248516 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCAGTCCCAATCTAAG
Found at i:19250653 original size:26 final size:26
Alignment explanation
Indices: 19250616--19250668 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19250606 TTTGACTTAG
*
19250616 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19250642 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19250668 G
1 G
19250669 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19252822 original size:907 final size:890
Alignment explanation
Indices: 19251472--19254016 Score: 3558
Period size: 887 Copynumber: 2.8 Consensus size: 890
19251462 ATCCCACCCG
* *
19251472 TTCATTCCCAGTCTAAGATCGGAAT-GAGCCGAAGGTTGCAGCAGCACATGCTGGGCTCGGGCAT
1 TTCATTCCCAGTCTAAGATCGG-ATGGA-CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * *
19251536 GTGCTGGTGCCGCATTTTTCTTTGTCGAGGCACA-ATCGTCGGAGAACCTGACTGACGACATTGG
64 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACACATCGTCGGAGAACCTGACCGACGACATTGG
* *
19251600 GGTTCTGACGA-CCG-GGGGCCCGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTG
129 GGTTCCGACGATCCGAGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
19251663 GCCCTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
193 GCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*** * *
19251728 GAGATTTTACAGGTTTGCTGCCAGTA-ATTTTAAAGTGCCTAAAATGGGGACACTTTTTTCAAAT
258 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
** * *
19251792 GGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTTTTTTCTGCATGCCAACAAAAATAC
323 GGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * * * *
19251857 AAGGATCATGCCTACCAAGTTTGGGGCCAAAA-TGCCTTTCAAAAAAATTTTTAAAAATCTCGAA
388 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAATATTTTAAAAAATCTCGAA
* *
19251921 CCATAAAAATTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
452 CCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
19251986 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
517 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
* * * *
19252051 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGTGCGTCCCGTCTATCTGGTC
582 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGGCC
*
19252116 GACGTAGTGCCCACCCGGCTGCCTGCCCGCCCGCTCGTTTCGTCA-TGTGGCTTAGGCATACGAA
647 GACGTAGTGCCC-CCC-GC--CC-GCCCGCCCGCTCGTTTCGTCAGT-TGGCTTAGGCATACGGA
* * *
19252180 GTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGTACGTAGA
706 GTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
* * * * **
19252245 GGGAGACTCAG-TCGATCCCCGACTTGCGCATCC-CCCCGTCTAG-CGGGTTGAGCGCCCGCACG
771 GGG-GACCCAGACCGATCCCCGACTTGCGCATCCTACCC-TCTAGTCGGCTT-AAAGCCCGCACG
* * * * * *
19252307 CTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAA
833 CTCGTTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCCAATCTAAGCAAAAGAAA
*
19252365 TTCATTCCCAGTCTATGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
1 TTCATTCCCAGTCTAAGATCGGAT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* *
19252430 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATAGCCGGAGAACCTGACCGG
65 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-CA-CATC---G--T---CGGAGAACCTGACCGA
* * * *
19252495 TGGCATTGGGGTTCCGACGATCGGAGGGGCCATGGGGGGTGTGCGCACATGATGTGTGATGGGTG
120 CGACATTGGGGTTCCGACGATCCGAGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
19252560 CTGGTACTTGG-CCTTATATTGGCCCCCTATCCATCATCAAACCTCAAGAGCTCACACCCCCTTA
183 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACACCCCCTTA
* *
19252624 AAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACACT
248 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
19252689 TTTTTCAAATGGTCACAAAATCTTGCACACTTTGAGTTTTTGGCTGAATTTTTTTGTGCATGCCA
313 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
*
19252754 AGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAATATTTTAAAA
378 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAATATTTTAAAA
* *
19252819 AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
443 AATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* ***
19252884 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATCTACAAGCCATAAAAATGGCATTGGCAGGT
508 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
* * * * * *
19252949 ATAAATATGAAGATATGCCTAAACCCACCCACCACCCTATCGATCCACGACTTGCCCATCCCGTC
573 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCGCATCCCGTC
* *
19253014 TCTCTGGCCAACGTAGTG---CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
638 TCTCTGGCCGACGTAGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATAC
* * * *** * **
19253076 GGAGTTCATTCCCAGTCTAAAATTGTACCAAACTAAGGGTTATGGCAGCAGGATCGGCAGCACGC
703 GGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* * * * ** *
19253141 AGAGGGGGCCCCGACCGATCCTCGGCTTGCGTGTCCTACCCTCTGGTCGGCTTAAAGCCCGCACG
768 AGAGGGGACCCAGACCGATCCCCGACTTGCGCATCCTACCCTCTAGTCGGCTTAAAGCCCGCACG
* * *
19253206 CTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAATCTAAGCAAAAGGAG
833 CTCGTTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCCAATCTAAGCAAAAGAAA
* * * * **
19253264 TTCATTCCCAGTCTAAGATCGGATTGGACCCAGGGTTCCGACAGCACATGCTGTGCTCACGCATG
1 TTCATTCCCAGTCTAAGATCGGA-TGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * ** *
19253329 TGCTAGTGCCGTATTTTTCATCACCGGGGCAC-CATCGTCGGAGAACCTGACCGACGACATTGTG
65 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACACATCGTCGGAGAACCTGACCGACGACATTGGG
** *
19253393 GTTCCGGTGAT-TGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
130 GTTCCGACGATCCGA-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
19253457 CCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
194 CCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
19253522 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAATGGGGACATTTTTTTCAAATG
259 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
19253587 GTCACAAAATCTTGTACCCTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACA
324 GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
*
19253652 AGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCCGAAAATATTTTAAAAAATCTCGAACC
389 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAATATTTTAAAAAATCTCGAACC
* * *
19253717 CTAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAA
454 ATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* **
19253782 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCATTGGTGCACAGAAATATGAA
519 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
* *
19253847 GATGTGCCTAAACCCACCTACCACCATATCGATCTACGGCTTGCGCATCCCGTCTCTTTGGCCGA
584 GATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGGCCGA
* *
19253912 CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCAGTTGGCTTAGGTATACGGAGTTCATT
649 CGTAGTGCCC-CCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT
* *
19253977 CCCAGTCTAAGATCGGA-TCGGGCTGAGGGTTGCTGCAGCA
713 CCCAGTCTAAGATCGGACT-GGACTGAGGGTTGCGGCAGCA
19254017 CATGCTGGGC
Statistics
Matches: 1459, Mismatches: 162, Indels: 64
0.87 0.10 0.04
Matches are distributed among these distances:
886 42 0.03
887 430 0.29
888 37 0.03
891 80 0.05
892 2 0.00
893 85 0.06
894 4 0.00
896 7 0.00
898 5 0.00
899 254 0.17
900 12 0.01
901 1 0.00
902 2 0.00
903 3 0.00
904 31 0.02
905 4 0.00
906 86 0.06
907 373 0.26
908 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (890 bp):
TTCATTCCCAGTCTAAGATCGGATGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
GCTGGTGCCGCATTTTTCTTCGTCGGGGCACACATCGTCGGAGAACCTGACCGACGACATTGGGG
TTCCGACGATCCGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAATATTTTAAAAAATCTCGAACCAT
AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
TAGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCGGACTGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGACCCAG
ACCGATCCCCGACTTGCGCATCCTACCCTCTAGTCGGCTTAAAGCCCGCACGCTCGTTTCATGGG
TTAACTTAGGCATACAGAGTTCATTCCCAATCTAAGCAAAAGAAA
Found at i:19254742 original size:718 final size:716
Alignment explanation
Indices: 19253361--19255422 Score: 3238
Period size: 718 Copynumber: 2.9 Consensus size: 716
19253351 ACCGGGGCAC
* ** * *
19253361 CATCGTCGGAGAACCTGACCGACGACATT-GTGGTTCCGGTGATTGAGGGGGCCGGGGGGTGTGC
1 CATCGTCGGAGAACCTGACCGACGACATTAG-GGTTCTGACGATCGGGGGGGCCGGGGGGTGTGC
* * *
19253425 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACC
65 ACACATGATGTGCGATGGGTCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
19253490 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
130 TCGAGAACTCAC-CACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
19253555 AGT-TTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACCCTTTGAGTTTTTAG
194 AGTGTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
*
19253619 CTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAAC
259 CTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
*
19253684 TCCTTCCGAAAATATTTTAAAAAATCTCGAACCCTAAAAAGTTTGAAAAATCATGAAAAATAGAA
324 TCCTTCCGAAAATATTTTAAAAAATCTCGAACCCTAAAAAGTTTCAAAAATCATGAAAAATAGAA
*
19253749 AACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
389 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
19253814 CATAAAATTGGCATTGGTGCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGA
454 CATAAAATTGGCATTGGCGCGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * *
19253879 TCTACGGCTTGCGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCAT
519 TCTACGGCTTGCGCATCCCGTCTCTCTGG-CGACGTAGTGCCCGCCCG-TCGCCCGCCCGCTCGT
* * * *
19253944 TTCGTCAGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGGCTGAGGGTTG
582 TTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTG
* *
19254009 CTGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCACAATTTTCTTCGTCGGGGCACCATCGT
647 CCGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCACAATTTTCTTCGTCGAGGCACCATCGT
19254074 CGGAG
712 CGGAG
* * *
19254079 CATCGCCGGAGAACCTGACTGGCGACATTAGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCA
1 CATCGTCGGAGAACCTGACCGACGACATTAGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCA
*
19254144 CACATGATGTGCGATGGGTCCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCT
66 CACATGATGTGCGATGGGTCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
19254209 CGAGAACTCACTCACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
131 CGAGAACTCAC-CACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
19254274 GTGTTC-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
195 GTGTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
*
19254338 TGAATTGTTTCGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
260 TGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* *
19254403 CCTTCCGAAAATATTTTAAAAAATCCCGAACCCTAAAAAGTTCCAAAAATCATGAAAAATAGAAA
325 CCTTCCGAAAATATTTTAAAAAATCTCGAACCCTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* * * *
19254468 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATAAATTTACAAGAC
390 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
19254533 ATAAAATTGGCATTGGCGCGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
455 ATAAAATTGGCATTGGCGCGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
19254598 CTACGGCTTGCGTATCCTC-TCTCTCTGGTCGACGTAGTGCCCGCCCGTTCGCCCGCTCGCTCGT
520 CTACGGCTTGCGCATCC-CGTCTCTCTGG-CGACGTAGTGCCCGCCCG-TCGCCCGCCCGCTCGT
19254662 TTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTG
582 TTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTG
* *
19254727 CCGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAATTTTCTTCGTCGAGGCACCATCGT
647 CCGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCACAATTTTCTTCGTCGAGGCACCATCGT
19254792 CGGAG
712 CGGAG
* * *
19254797 CATCGTCGGAGAACCTGACCAACGGCATTAGGGTTCTAACGATC-GGGGGGCCGTGGGGGTGTGC
1 CATCGTCGGAGAACCTGACCGACGACATTAGGGTTCTGACGATCGGGGGGGCCG-GGGGGTGTGC
* *
19254861 ACACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACC
65 ACACATGATGTGCGATGGGTCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
19254926 TCGAGAACTCA-CACCCGATTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAATAGCCATTA
130 TCGAGAACTCACCACCC--TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* **
19254990 AAGTG-TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCAAGTTTTTA
193 AAGTGTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTA
* * * *
19255054 GCTCAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA
258 GCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* *
19255119 CTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGC-AAAAAGTTTCAAAAATCATGAAAAATAG
323 CTCCTTCCGAAAATATTTTAAAAAATCTCGAACC-CTAAAAAGTTTCAAAAATCATGAAAAATAG
* * * **
19255183 AAAACGAGTCGTCTTACCATGAAACGTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTTTAA
387 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* ** * *
19255248 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCCATC
452 GCCATAAAATTGGCATTGGCGCGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
19255313 GATCCACCGCTTACGCATCCCGTCTCTCTGGCTGGCGTAGT----G--C-TCGCCCGCCCGCTCG
517 GATCTACGGCTTGCGCATCCCGTCTCTCTGGC-GACGTAGTGCCCGCCCGTCGCCCGCCCGCTCG
*
19255371 TTTCGTC-GATTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGAC
581 TTTCGTCAG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
19255423 TGGATCGAGG
Statistics
Matches: 1245, Mismatches: 88, Indels: 30
0.91 0.06 0.02
Matches are distributed among these distances:
709 1 0.00
710 63 0.05
712 1 0.00
714 1 0.00
716 5 0.00
717 13 0.01
718 1155 0.93
719 6 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (716 bp):
CATCGTCGGAGAACCTGACCGACGACATTAGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCA
CACATGATGTGCGATGGGTCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACCACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
GAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCGAAAATATTTTAAAAAATCTCGAACCCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAATTGGCATTGGCGCGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
TACGGCTTGCGCATCCCGTCTCTCTGGCGACGTAGTGCCCGCCCGTCGCCCGCCCGCTCGTTTCG
TCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCCGC
AGCACATGCTGGGCTCGGGCATGTGCTAGTGCCACAATTTTCTTCGTCGAGGCACCATCGTCGGA
G
Found at i:19259073 original size:26 final size:26
Alignment explanation
Indices: 19259037--19259089 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19259027 GTTGACTTAG
19259037 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19259063 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19259089 G
1 G
19259090 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19260978 original size:26 final size:26
Alignment explanation
Indices: 19260942--19260994 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19260932 GTTGACTTAG
*
19260942 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
19260968 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
19260994 G
1 G
19260995 ATCGGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:19262726 original size:26 final size:26
Alignment explanation
Indices: 19262689--19262741 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19262679 GTTGACTTAG
*
19262689 GCATACGAAGTTC-TTATCCAGTCTAA
1 GCATACGAAGTTCATT-CCCAGTCTAA
*
19262715 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19262741 G
1 G
19262742 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19264505 original size:26 final size:26
Alignment explanation
Indices: 19264453--19264505 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19264443 GTTGACTTAG
* *
19264453 GCATATAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
19264479 GCATACAGAGTTCATTCCTAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19264505 G
1 G
19264506 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19265381 original size:26 final size:26
Alignment explanation
Indices: 19265339--19265391 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19265329 GTTGACTTAG
*
19265339 GCATACGGAGCTTATTCCCTGTCTAA
1 GCATACGGAGCTTATTCCCAGTCTAA
19265365 GCATACGGAG-TTCATTCCCAGTCTAA
1 GCATACGGAGCTT-ATTCCCAGTCTAA
19265391 G
1 G
19265392 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTTATTCCCAGTCTAA
Found at i:19266273 original size:26 final size:26
Alignment explanation
Indices: 19266237--19266289 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19266227 GTTGACTTAG
19266237 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19266263 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19266289 G
1 G
19266290 ATCAGACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19266736 original size:898 final size:898
Alignment explanation
Indices: 19261837--19275033 Score: 15276
Period size: 886 Copynumber: 14.8 Consensus size: 898
19261827 GTTGATTTAG
* * * *
19261837 GCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGGCAGCACATGCTGGG
* ** *
19261902 CTCGAGCATGTGCTGGTGCCGTATTTTTC-T-------------TCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGACGGGGCACCATCGTCGGAGCATCACTGGAGA
* ** * *
19261953 ACCTGACCGACGGGATTGGGGTTCCGGTGATCGGGGGGCCGTGGGGGTTGTGCACACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGGTGTGCGCACATGATGTG
** *
19262018 CGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * **
19262083 ACCCCCTGAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGTTATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19262148 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19262213 TGCATGCCAACAAAAATACAAGGATCACGTCTA-AAACGTTTGGGGTCAAAACTCC-TTCCAAAA
390 TGCATGCCAAC-AAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTTCGAAAA
** ** ** * *
19262276 ATATTTTAAAAAATCTGGAACCGCCAAAAGTTTTGAAAATCATTAAAAATAGAAAACGAGTCGTC
453 A-ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
** *
19262341 TTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19262406 CATTGGCACGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACTCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
19262471 CGTATCCCGTCTCTCTAGCCGACGTAGT--------GCCCGCCTGCTCGTTTCATCGGTTGGCTT
647 CGCATCCCGCCTCTCTGGCCGGCGTAGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* *
19262528 AGGCATACGGAGTTCATTCCCAGTCTAAGATTC-GACTGGACTGAGGGTTGCGGCACCAGGA-CT
712 AGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCGGACTGAGGGTTGCGGCAGCAGGATC-
* ** * * * * *
19262591 GGCAGCACATAGAGGGGGACCCGATCGATCCCCGACTTGCGTATCTCGCCACTCTGGCCGGCTGA
775 AGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * *
19262656 GCGCCTGCACGTTCGTTTCGTGAGTTGACTTAGGCATACGAAGTTC-TTATCCAGTCTAA
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCCAGTCTAA
* * * * *
19262715 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGGCAGCACATGCTGGG
* * *
19262780 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGACGGGGCACCATCGTCGGAGCATCACTGGAGA
* *
19262845 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCC-GAGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * * *
19262909 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATTCCTCATCAAAACTTGAGAACTCAC
195 CGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19262974 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* ** * *
19263039 GGGGACATTTTTTTCAAATAATCACAAAATCTTGTACACTTCGTGTTTTTTGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
19263104 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAGA
390 TGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA-A
* * * * * *
19263168 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTTCAAAAATTGTTAAAAATATAAAATGAGTCGTC
453 AATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * ** *
19263233 TTGCCATTAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGG
517 TTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19263298 CATTTGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
19263363 CGCATCCTGTCTCTTTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTA
647 CGCATCCCGCCTCTCTGGCCGGCGTAGTG---G-CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * *
19263428 GCTTAGGCATACGGAATTCATTCCTAGTCTAAGATCAGACCAGA-TCAAGGGTTGCAGCAGTAGG
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGG
* * * * * * *
19263492 ATCGGTAGCACGCAGATGGGGACCCGACCGATCCCCGACTTGAGCATCCCGCCCCTCTAGCCAGC
772 ATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
19263557 TGAGCGCCCGTACGCTCGTATC-------G-C---GG-GTA--GA---C-TT---AG-----
837 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19263593 GCGTACGGAGTTCATTCCCAGCCTAAGATCGGACCGGACCGAAGGTTACGGAAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGGCAGCACATGCTGGG
* *
19263658 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGTGCATCA-TCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGACGGGGCACCATCGTCGGAGCATCACT-GGAG
* * * *
19263722 AACCTGACCGATGGCATTGGGGTTCTGGCGATC-GGGGGCCGGGGCGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
19263786 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAG
195 CGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
19263851 ACCCCCTTAAAGAGCATTT-ACGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 ACCCCCTTAAAGAGCATTTGA-GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
19263915 TGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTACCTGACTTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
19263980 GTGCATGCCAGAAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAA
389 GTGCATGCCA-ACAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* *
19264045 AATTTTAAAAAATCTCGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
**
19264110 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
19264175 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATTGATCCACGGCTTAC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
19264240 GCATCCCGCCTCTCTTGCTGGCGTAGTGCCCGGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
648 GCATCCCGCCTCTCTGGCCGGCGTAGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* *
19264305 GGCATATGGAGTTCATTCCCAGTCTAAGATC-GAACCGGATTGAGGGTT-----A-C--G----G
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACTGAGGGTTGCGGCAGCAGGATCAG
* *
19264357 CAGCACGCAGAGGGAGACCC-AGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAG
777 CAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* ** *
19264421 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCATTCTAA
841 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
19264479 GCATACAGAGTTCATTCCTAGTGTAAGATCGGACCGGACTG-AGCATTGCGGCTGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAG-GTTGCGGCAGCACATGCTGG
* * * * **
19264543 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTC-ATCGGGGCACCATCGCCGGAGCATCGCCAGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGA-CGGGGCACCATCGTCGGAGCATCACTGGA
* *** * * * * * *
19264607 GAAACTGACCGGTAGCGTTGGGGTTTCGACGATCGGGGGGGCC-TGGGGGTGCGCGCACATCATT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATG
* *
19264671 TGCAATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
19264736 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
19264801 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** * *
19264866 GGCACATGCCAACAAAAATACAAGGATTACGTCTAGCAAGTTTGGGGCCAAAACTCC-TTCTGAA
388 TGTGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAA
* * *
19264930 AAAATTTT-AAAAATCCAGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAAAGAGTCGT
451 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * * *
19264994 CTTGCCATCAAACTTCGCACGAAGGGTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * *
19265059 GCATTGGCATATAGAAATAAGAAGATGTGCATAAACCCACCTGCCACCCTATCGATCCACGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
19265124 GCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGTCTGCTCATTTCGTCGGTTGGCT
646 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * ** *
19265189 TAGGCATACGAAATTCATTCCCAGTCTAAGATCAGATAGGACCGAGGGTT-----A-C--G----
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCA
* * * * * *
19265242 GCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCACATCCCACCCCTCTGGCCTGTTGAG
776 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
19265307 CGCCTGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTT-ATTCCCTGTCTAA
841 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG-TTCATTCCCAGTCTAA
* * * * * * *
19265365 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGTAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGGCAGCACATGCTGGG
* * * * * *
19265430 CTCGGGCGTGCGCTGGTGCCACATTTTTCTT-TATCGGGGCACCATCTTCAGAGCATCCCTGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGA-CGGGGCACCATCGTCGGAGCATCACTGGAG
** ** ** *
19265494 AACCTGACCGGTGGCATTAAGGTTCCGGTGATCGGGGGGGCC-GGGGGGTGTTCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
19265558 GTGATGGGTGCTGGTGCTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
19265623 CACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGTCAGTAGCCCTTAAAGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
19265688 TGGAGATACTTTTTTCAAATGGTCACAAAATCTTTTACAGTTCTAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
19265753 GTGCATGCAAAAAAAATACAAGGATCACGTCTGCCAATTTTGGGGCCAAAAATCCTTCCGAAAAA
389 GTGCATGCCAACAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * *
19265818 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAATAATCGTGAAAAATAAAAAACGAGTTGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
19265883 GCCATGAAACGTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* ** * *
19265948 TTAGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * * * * * *
19266013 CATCCCGCCTCTCTGGCCGGCCAACTGGCCGCCCGCTCGCCCACTCCTTTTGTCGTTTGGCTTAG
649 CATCCCGCCTCTCTGGCCGGCGTAGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * *
19266078 GCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACTGACGGTTGCGGCAGCAGGATCAGCA
714 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCAGCA
*
19266143 GCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
779 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
19266208 CAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
19266263 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAAGTTTGCAGCAGCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGGCAGCACATGCTGGG
**
19266328 CTCAAGCATGTGCTGGTGCCACATTTTTCTTCGACGGGGCACCATCGTCGGAGCATCACTGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGACGGGGCACCATCGTCGGAGCATCACTGGAGA
* *
19266393 ACTTGACCGACGGCATTGGGGTTCCGTA-GATCCGGGGGGCCGGGGGGGTGTGCGCACATGATAT
131 ACCTGACCGACGGCATTGGGGTTCCG-ACGAT-CGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * * * *
19266457 GCGATGGGTGCTGGTGCTTGGCCCTTATATTAGCCACTTATCCCTCATCGAACCTCAAGAACTCG
194 GCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
19266522 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
19266587 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
19266652 ATGCATGCCAACAAAATACAAGGATCACGGCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAA
389 GTGCATGCCAACAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * *
19266717 A-TTTAAAAAATCACGAACCGTAAAAAGTTTTAAACATCATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
19266781 GCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
19266846 TTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC-ATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
19266910 CATCCCGCCTCTCTGGCCGGCGTACT-GTCGCCCGCTCGCCCGCTCGTTTTCATCGTTTGGCCTA
649 CATCCCGCCTCTCTGGCCGGCGTAGTGGCCGCCCGCCCGCCCGCTCG-TTTCGTCGGTTGGCTTA
* * * ** * * * *
19266974 GGCATACGAAGTTCATTCCTAATCTAAGATTGGACCGGACTGATGGTTGTGGCAGCAGGATCTGT
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCAGC
* * * * *
19267039 AGCACGCAGAGGGGGACCCGACCAATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGACTGAGCA
778 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
19267104 TCGGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCACTCTAA
843 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
19267160 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---CC-G-----GA-C---C--GA-
* ** * * *
19267225 CGAGGGTTGCGGTAGCACATGCTGGGCTCAAGCATGTGCTTGTACCACATTTTTCTTTG-CTGGG
43 --A-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGAC-GGG
* * * * * * *
19267289 GCATCATCGTCGAAGCATC-GTCGAAAAACCTGACCGACGGCAATGGGGTTCCGGCGATC-----
104 GCACCATCGTCGGAGCATCACT-GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
* * *
19267348 G--GGGGGGCTATGCACACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCT
168 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCT
* * * * * *
19267411 GTCCCTCATCAAAACTGGAGAACTCACTCTCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
233 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
19267476 GCCAGTAGCTATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACA
298 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
19267541 CTTCGAGTTTTTAGCTGACTTTTTTTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAG
363 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAATACAAGGATCACGTCTACCAAG
* * ** * * * **
19267606 TTT-GTGCCAAAACTCCTTCCGAAAATTTTTTTAAAAATCTCGAA-CTTCAAAAAGTTTTGAAAA
427 TTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAA
* * * * *
19267669 TCGTGAAAAATAAAAAATGAGTCGTCTGGCCATGATACTTCACACGAAGGCTTAAGGAACCATTG
491 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTG
* * *
19267734 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT-TTCCTAAACCCAC
556 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * * *
19267798 CAAACACCCTATCGATCCACGGCTTGCGCATCCCGCCTTTCTAGCCGGCATAGTGCCCGCCCGCC
621 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGGCCGCCCGCC
* * * * ** *
19267863 CGTCCACTCGTTTCGTCAGTTGGCTTAGCCATACGGAGTTCATTCCCAGTCTAAGATTTGACCAG
686 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * ** * *
19267928 ACCGAGGGCTG-TG--GCA-G--CA-CA-CA---A-ATTGGGACCCGGCCGATCCCCGACTTGCG
751 ACTGAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
** * * * *
19267981 CATCTTGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACATAGGCATATGG
816 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
19268046 AGTTCATTCCCAGTCTAA
881 AGTTCATTCCCAGTCTAA
* *
19268064 G-AT-C--A----A-----A--C------C--A---GACC-AAGGGTTACGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAA-GGTTGCGGCAGCACATGCTGG
* * * *
19268102 GCTCGGGCATGTGCTAGTAACC-CATTTTTCTTCGGCGGGGCACCATC-TCCGGAGCATC-GTCG
65 GCTCGGGCATGTGCTGGT-GCCACATTTTTCTTCGACGGGGCACCATCGT-CGGAGCATCACT-G
* * * *
19268164 GAGAACCTGACCGACGGCATTGGGGTTCCGATGATCAGGAGGGTCGGGGGGGGTGTGTGCACATG
127 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GG-GGGGCCGGGGGGGTGTGCGCACATG
* * *
19268229 GTGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCTCTTATCCCTCATCAAACCTCGAGAA
190 ATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
19268294 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCT
255 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * * *
19268359 AAAATAGGGACACATTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * **
19268424 TTTTGTGCATACCAACAAAAATAAAAGGATCATGTCTACCAAGTTTGGGACCAAAACACCTGCCG
385 TTTTGTGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * * ** *
19268489 AAAAATTTTTTAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
449 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
19268554 GTCTTGCCTTGAAACTTCACACGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*** * * * *
19268619 TGGCATTGGCACATAGAAATATGAAGATATGGCTAAACCCACCAACCACCCTATCGATCCACGCC
579 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
19268684 TTGCGCATCCAGCCTCTTTGGCCGACGTAGAGCCCGCCCGCCAGCCCGCTCGTTTCGTCGGTTGG
644 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * * *
19268749 CTTAGGCATACGAAGTTCGTTCCTAGTCTAAGATCAGACCAGACAGAGGGATACAGCAGCAGGAT
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGAT
* * * **
19268814 C-GACAGCACACAAAGGGGGACCCGACCGATCCCCGGCTTGTGCATCTTGCCCCTCTGGCCGGCT
774 CAG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
19268878 GAGCGCCCGTACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
838 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19268939 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGGCAGCACATGCTGGG
* * * * * **
19269004 CTTGGG-ATGTGCTGTTGCCATATTTTTCTTCAACGGGGCACCATCATCGGAGCATCACCAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGACGGGGCACCATCGTCGGAGCATCACTGGAGA
* * * * ** *** *
19269068 ACTTGACCAACGGTATTAGGGTTCCGACGATTAGGGGG-CTAAGGGGTGTGCGCAGATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
**
19269132 GATGGGTGCTACTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19269197 CCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCGGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
19269262 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
19269327 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TCCTGAAAAA
391 GCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAA
* * *
19269391 ATTTTAAAAAATCCCTAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
19269456 GCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAACTGGCA
519 GCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
19269521 TTGGCATGCAGAAATATGATGATTTGCCTAAAACCACCTACCACCCTATCGATCCACGACTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
19269586 CATCCTGCCTCTCTGGCCGGCGTAGT----GCCCGCTCGCTCGCTCATTTCGTCGGTTGGCTTAG
649 CATCCCGCCTCTCTGGCCGGCGTAGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * ** * *
19269647 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GGTTGTAGTAGGCAGGATTCGG
714 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCA-GCAGGA-TCAG
* * * * *
19269711 CAGCACAC-GAGGTGGACCCGACCGATTCCTGGCTTGCGCATCCCGCCCCGCTGGCCCGGCTGAG
777 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CCGGCTGAG
** *
19269775 CGCCCGCACGCTTATTTCTTGGCGTT-AGCTTA-GC-TACGGAGTTCATTCCCAGTGC-AA
841 CGCCCGCACGCTCGTTTCGTGG-GTTGA-CTTAGGCATACGGAGTTCATTCCCAGT-CTAA
* * * * ** * **
19269832 GCATACGGGATTTCATTCTCTAGTCTAAGATCAGACCAGA-AAAAGAGTTGCGATCAGCATCACA
1 GCATAC-GGAGTTCATTC-CCAGTCTAAGATCGGACCGGACCGAAG-GTTGCG-GCAGCA-CATG
* * *
19269896 CTGGGCTCGAGCATATG-TGGTGCCCACATTTTTCTTC-ATCGCTCGGCACCAATCG-CGGAGCA
61 CTGGGCTCGGGCATGTGCTGGTG-CCACATTTTTCTTCGA-CG--GGGCACC-ATCGTCGGAGCA
** * * *
19269958 TTGCCGGAGAACCTGACCAGACGGCATT-GGGTTCCAACGATC-GGGGGCCGGCAGGGGGGGTG-
121 TCACTGGAGAACCTGACC-GACGGCATTGGGGTTCCGACGATCGGGGGGCCGG--GGGGGTGTGC
* * * * *
19270020 GCACATGAGTATGTTGATGCGCGTTG-TCAGTGCTTGGCCCTCAATATTGTCCCCCTATCCCT-A
183 GCACATGA-TGTG-CGATG-G-G-TGCT-GGTGCTTGGCCCT-TATATTGGCCCCCTATCCCTCA
*
19270083 TCAAACCTC--GAACTTTCACA-CCCCTTAAAGAGCATTTGAGATTTT--TGGTTTGCTGCCAGT
241 TCAAACCTCGAGAAC--TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
19270143 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAGTGGTGACAAAATCTTGTACACTTCGA
304 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * **
19270208 GTTTTTAGCTGAATTTTTTTTTGCATGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTACG
369 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGG
*
19270273 GCCAAAACT-CTTTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAATA-TTTCAAAAATCGTG
433 GCCAAAACTCCTTT-CGAAAAAATTTTAAAAAATCCCGAACCGTAAAA-AGTTTCAAAAATCGTG
* * *
19270336 AAAATTAGAAAACGAGTCGTCTTGCGATGAAACTTCACACGAAGGCCTAAGGGACCATTGTATGA
496 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGA
* *
19270401 ATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACC
561 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * * *
19270466 ACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACATACTGGCCCCCCACCCACCT
626 ACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGGCCGCCCGCCCGCCC
* * * * *
19270531 GTTTGTTTTGTCGGTTGGCTTAGGCATACGGACTTCATTCCCAGTCTAAGATCAGACCAGACTGA
691 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGA
* * * * ** * * * *
19270596 GGGTTGCAGCAACAGGATCAACAGCCCATAGAGGGGGA-CCTAGCCGATCCCCTGCTTCCGCTTC
756 GGGTTGCGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATC
* * ** * *
19270660 CCTG-CCCTATGGCCGGATGAATGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGT
820 CC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
*
19270724 TCATTCCTAGTCTAA
884 TCATTCCCAGTCTAA
** * *
19270739 GCAGCCGTAGTTCATT-CCAGTCTAAGATCGG-CCGGACCAAAAGGTTGGCGGCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC-GAAGGTT-GCGGCAGCACATGCTG
* * * *
19270802 CGCTCAGGCATGTGC-GGTGCCCCATTTTTCTTCG-GGGGGCACCATCGTCGGAGCATCAC-GGA
64 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGACGGGGCACCATCGTCGGAGCATCACTGGA
** * *
19270864 GAACCTGACCGGTGGCATTGGGAGTTCCGACGATCGGGGGGGCC-GAGGGGTTTGCGCACATGAT
129 GAACCTGACCGACGGCATTGGG-GTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGAT
*
19270928 GTGCGATGGGTGCTGGTGCTTGGCCCTTAATACTTGGCCCCTTATCCCTCATC-AA-CTCGAGAA
192 GTGCGATGGGTGCTGGTGCTTGGCCCTT-ATA-TTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
19270991 CTCACACCCCCTTAAAAGAGAATTTGAGATTTTACAGGTTTTGCTGCCAGTAGCCATTAAAGTGT
255 CTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGG-TTTGCTGCCAGTAGCCATTAAAGTGT
*
19271056 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAAT
318 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
*
19271121 TTTTTTGTGCATGCCAACAAAA-ACTCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTT
383 TTTTTTGTGCATGCCAACAAAATA--CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * **
19271185 TCGAAACAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATCGTG-AAAATAGAAAACGA
446 TCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
**
19271249 GTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAA
511 GTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
19271314 AAATGGCATTGGCATGCAGAAATTTGAAGATGTGCCTAAACCCACCTACCAACCTATCGACCCAC
576 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * *
19271379 GGCTTGCGCATCCCGCATCTCTGGCCGGCGTACTGGCCGGCGTACTGGCCGCTCGCCCGCTCGCT
641 GGCTTGCGCATCCCG---C-CT------C-T-CTGGCCGGCGTAGTGGCCGCCCGCCCGCCCGCT
* * * * *
19271444 CGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-AAGGACCAGACCGAGG
694 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGACTGAGG
* * * * * * *
19271508 GTTGTGGCAGCAGGATAAGCAGCGCGTAAAGGGGGACCCGACCGATCCCTGGCTTGCACATCCC-
758 GTTGCGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
* * * * *
19271572 ACGCTACTGGCCGGCTGACCGCCCACACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
823 CCCCT-CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
19271637 TTCCCAGTCTAA
887 TTCCCAGTCTAA
* * * ** ** * *
19271649 GCAGACGGAGTTCATACCCAGTCTAAGATTGGAATGGACTTAGGGTTGCGGCAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGGCAGCACATGCTGGG
* * *
19271714 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACGGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGACGGGGCACCATCGTCGGAGCATCACTGGAGA
* * * * * *
19271779 ACCTGACCGGCGGCATTGAGGCTCCGACGATCGGGGTGGTCGAGGGGGTGTGCACACATGATGT-
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGGTGTGCGCACATGATGTG
*
19271843 -G-TGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19271906 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTC----A-
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
19271966 ---G--A--------AATTGG------------G-ACACTTCGAGTTTTTAGCTGAAATTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * *
19272005 TGCATGCCAACAAAAATAAAAGGATGATGTCTACCAAGTTTGAGGCCAAAATTCCTTCCAAAAAA
390 TGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * **
19272070 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
19272135 GCCATGAAACTTCACGA-GAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGC
519 GCCATGAAACTTCAC-ACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
19272199 ATTGGCACGAAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGACTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
19272264 GCATCCCGCCTATCTGGCCGGTGTAGT-GCTCGCCCGCCCACTCGCTCATTTCGTCGGTTGGCTT
648 GCATCCCGCCTCTCTGGCCGGCGTAGTGGC-CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * ** * * * *
19272328 AGGCATACGGACTTAATTCCCAATCTAAGATTGGACCGGACCGAGGGTTACGGTAGTAGGATCAG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCAG
* * * * * * * *
19272393 CAGCACGTAGAGGGGGACTCGACTGATCCCCGACTTGCGCATCCTGCCCCTCTAGCTGGCTGAGT
777 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
19272458 GCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAA
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19272515 GCATACGGAGTTCATTCCCAGTTTAATATGGGACCGGACCGAGGGTTGCGGCAGCACATGCGGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGGCAGCACATGCTGGG
* * *
19272580 CTTGCGCATGTGCTGGTGCCGCATTTTTCTTCGACGGGGCACCA---TC---G--T---TGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGACGGGGCACCATCGTCGGAGCATCACTGGAGA
* * ** * * * *
19272634 ACCCGATCGGTGGCATTGGGATTCTGACGATCGGGGGAG-CTGGGGGGTGTGCGCACATGATATG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTG
19272698 CGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
19272763 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19272828 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19272893 TGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCTAAAAA
390 TGCATGCC-AACAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAA
* *
19272957 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * * *
19273022 TACCATGAAACTTCACACGAAAGCTTAAAGGACCATTGTGTGAATTTCCAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** * * *
19273087 ATTGGCACATAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * * * * * *
19273152 GCATCTTGCCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCACTGGTTTCGTCGGTTGGCTTC
648 GCATCCCGCCTCTCTGGCCGGCGTAGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * *
19273217 GGCATACGAAGGTCATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGCTGGGGCAACAAGATCGG
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGGATCAG
* ** * * * * *
19273281 CAGCACGCAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATTCTGCCCCTTTGGGCAGCTGAGC
777 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
19273346 GCCCGAAAGCTCGGTTCGT--G--G-----GG--T---GA---C-TT---AG-----
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19273377 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGGCAGCACATGCTGGG
* *** * *
19273442 CTCGGGCATGTGCTGGAGCTGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGACGGGGCACCATCGTCGGAGCATCACTGGAGA
* * *
19273507 ACCTGATCGACGGCATTAGGGTTCCGACGATTGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
19273571 CGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
19273636 ATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCTAGTAGCCATTAAAGTGTCTGGAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19273701 GGGGACACTTTTTTCAAATGGTCACAATATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19273765 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC-TTCCAAAAA
390 TGCATGCC-AACAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * *
19273829 ATTTTAAAAAAATCCCGAACCGCAAAAACTTTCAAAAATCGTGAAAAATAGAAAACGATTCGTCT
454 ATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
19273894 TGCCATGAAACTTCACACAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGC
518 TGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
19273959 ATTGGCATGCAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * ** * **
19274024 GCATCCCGCCTCTCTGGTCGACGTAGT-GCCTGCCCACCCGATCGCTCGTTTCATCATTTGGCTT
648 GCATCCCGCCTCTCTGGCCGGCGTAGTGGCC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* ** **
19274088 AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGA-TAGAGGGTTGCGGCAGCAGGATTG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGGATCA
* * * * *
19274152 GCAGCACACAGA-GGGGACCC-AGCCGATCCCCGGCTTGCGCATCCCACCCCTCCGGTCGGGTGA
776 GCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * * ** *
19274215 ACGCTCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCTTAATCTAA
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
19274274 GCATACGGAGTTCATTCCCAGACTAAGATTGGATCAGATCGAGGGTTGGGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGGCAGCACATGCTGGG
* * * * * *
19274339 CTCAGGCTTGTGCTGGTGCCCCATTTTTCTTC-ACCTGGGCACCATCGCCGGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGA-CGGGGCACCATCGTCGGAGCATCACTGGAG
* * * * * * *
19274403 AACCTGACCGGCAGCATTAGGGTTCCGACGATTGGGGGGGTC-GGGGGGTGTACGCAAATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
19274467 G-GAT--GT--TGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
19274526 CA-CCCGTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGACCAGTAGCCATT-AAGTGTCTGAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CCAGTAGCCATTAAAGTGTCTGAA
* *
19274588 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTTGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
19274653 TGTGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGGCCAAAA-TCCTTCCAAA
388 TGTGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTTCGAA
* * * *
19274717 AAAATTTTAAAAAATCCCGAACCGCACAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGT
451 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
19274782 CTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
19274847 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * * * *
19274912 GCTTAACCCGTCTCTCTGGCCGACGTTGTCCCCGCCCGCACGCCCGCCCGCCCACTCGTTTCGTC
646 GCGCATCCCGCCTCTCTGGCCGGCGTAGT----G---GC-CGCCCGCCCGCCCGCTCGTTTCGTC
* * * *
19274977 GGTTGGCTTAGGCATATGGAGTTCATT-CCAGTCTAAGATCAAACCAGACCGAGGGTT
703 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
19275034 TTTGCAGCAC
Statistics
Matches: 10609, Mismatches: 1314, Indels: 773
0.84 0.10 0.06
Matches are distributed among these distances:
851 1 0.00
852 101 0.01
853 4 0.00
854 21 0.00
855 36 0.00
856 1 0.00
857 119 0.01
858 2 0.00
859 1 0.00
860 74 0.01
861 234 0.02
862 253 0.02
863 133 0.01
864 2 0.00
865 5 0.00
866 290 0.03
867 10 0.00
868 2 0.00
869 1 0.00
870 5 0.00
871 72 0.01
872 418 0.04
873 235 0.02
874 15 0.00
875 107 0.01
876 184 0.02
877 390 0.04
878 396 0.04
879 6 0.00
880 2 0.00
881 2 0.00
882 1 0.00
883 3 0.00
884 1 0.00
885 52 0.00
886 1112 0.10
887 270 0.03
888 425 0.04
889 88 0.01
890 285 0.03
891 333 0.03
892 257 0.02
893 148 0.01
894 81 0.01
895 54 0.01
896 54 0.01
897 934 0.09
898 669 0.06
899 478 0.05
900 115 0.01
901 57 0.01
902 28 0.00
903 386 0.04
904 272 0.03
905 43 0.00
906 77 0.01
907 145 0.01
908 57 0.01
909 34 0.00
910 271 0.03
911 44 0.00
912 43 0.00
913 45 0.00
914 1 0.00
915 246 0.02
916 257 0.02
917 17 0.00
919 2 0.00
922 4 0.00
923 98 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGACGGGGCACCATCGTCGGAGCATCACTGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGCCTCTCTGGCCGGCGTAGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCAGCAGC
ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19267170 original size:26 final size:26
Alignment explanation
Indices: 19267134--19267212 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
19267124 GTTGACTTAG
*
19267134 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19267160 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19267186 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19267212 G
1 G
19267213 ATCAAACTAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19268949 original size:26 final size:26
Alignment explanation
Indices: 19268913--19268965 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19268903 GTTGACTTAG
19268913 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19268939 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19268965 G
1 G
19268966 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19271416 original size:12 final size:12
Alignment explanation
Indices: 19271399--19271429 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
19271389 TCCCGCATCT
19271399 CTGGCCGGCGTA
1 CTGGCCGGCGTA
19271411 CTGGCCGGCGTA
1 CTGGCCGGCGTA
19271423 CTGGCCG
1 CTGGCCG
19271430 CTCGCCCGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.06, C:0.35, G:0.42, T:0.16
Consensus pattern (12 bp):
CTGGCCGGCGTA
Found at i:19274087 original size:872 final size:870
Alignment explanation
Indices: 19272515--19275024 Score: 3294
Period size: 872 Copynumber: 2.9 Consensus size: 870
19272505 CCTAGTCTAA
* * * *
19272515 GCATACGGAGTTCATTCCCAGTTTAATATGGGACCGGACCGAGGGTTGCGGCAGCACATGCGGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
19272580 CTTGCGCATGTGCTGGTGCCGCATTTTTCTTCGACGGGGCACCATCGT-------T----GGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGACGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * * * *
19272634 ACCCGATCGGTGGCATT-GGGATTCTGACGATCGGGGGAGCTGGGGGGTGTGCGCACATGATATG
131 ACCTGATCGGCGGCATTAGGG-TTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
19272698 CGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
19272763 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19272828 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19272893 TGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTC-CAAAAA
* * *
19272958 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * *
19273023 ACCATGAAACTTCACACGAAA-GCTTAAAGGACCATTGTGTGAATTTCCAAGCCATAAAAATGGC
518 GCCATGAAACTTCACAC-AAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** * * *
19273087 ATTGGCACATAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * * * * * *
19273152 GCATCTTGCCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCACTGGTTTCGTCGGTTGGCTTC
647 GCATCCCGCCTCTCTGGCCGACGTAGTGCCCACCCACCCGACCACTCGTTTCATCAGTTGGCTTA
* * *
19273217 GGCATAC-GAAGGTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGCTGGGGCAACAAGATCGG
712 GGCATACAG-AGGTCATTCCCAGTCTAAGATCAGACCAGATAGAGGGCTGCGGCAACAAGATCGG
* * * * * ** ** *
19273281 CAGCACGCAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATTCTGCCCCTTTGGGCAGCTGAGC
776 CAGCACACAGA-GGGGACCCAGCCGATCCCCGGCTTGCGCATCCCACCCCTCCGGGCAGCTGAAC
19273346 GCCCG-AAAGCTCGGTTCGTGGGGTGACTTAG
840 GCCCGTAAA-CTCGGTTCGTGGGGTGACTTAG
* *
19273377 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19273442 CTCGGGCATGTGCTGGAGCTGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGACGGGGCACCATCGTCGGAGCATCACCGGAGA
*
19273507 ACCTGATCGACGGCATTAGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGATCGGCGGCATTAGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
19273572 GATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
19273637 TCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCTAGTAGCCATTAAAGTGTCTGGAATG
261 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
19273702 GGGACACTTTTTTCAAATGGTCACAATATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
19273766 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAT
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAT
* *
19273831 TTTAAAAAAATCCCGAACCGCAAAAACTTTCAAAAATCGTGAAAAATAGAAAACGATTCGTCTTG
455 TTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
19273896 CCATGAAACTTCACACAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCAT
519 CCATGAAACTTCACACAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
19273961 TGGCATGCAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* ** * * *
19274026 ATCCCGCCTCTCTGGTCGACGTAGTGCCTGCCCACCCGATCGCTCGTTTCATCATTTGGCTTAGG
649 ATCCCGCCTCTCTGGCCGACGTAGTGCCCACCCACCCGACCACTCGTTTCATCAGTTGGCTTAGG
* * * * * *
19274091 CATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGATAGAGGGTTGCGGCAGCAGGATTGGCAG
714 CATACAGAGGTCATTCCCAGTCTAAGATCAGACCAGATAGAGGGCTGCGGCAACAAGATCGGCAG
* * * *
19274156 CACACAGAGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCACCCCTCCGGTCGGGTGAACGCTC
779 CACACAGAGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCACCCCTCCGGGCAGCTGAACGCCC
* * *
19274221 GTACACTCGTTTCGTGGGTTGACTTAG
844 GTAAACTCGGTTCGTGGGGTGACTTAG
* ** *
19274248 GCATACGAAGTTCATTCTTAATCTAAGCATACGGAGTTCATTCCCAGACTAAGATTGGATCAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C-------GGA-C----
* * * * *
19274313 CGAGGGTTGGGGCAGCACATGCTGGGCTCAGGCTTGTGCTGGTGCCCCATTTTTCTTC-ACCTGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGA-CGGG
* * *
19274377 GCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCAGCATTAGGGTTCCGACGATTGGGGGG
104 GCACCATCGTCGGAGCATCACCGGAGAACCTGATCGGCGGCATTAGGGTTCCGACGATTGGGGGG
* * * *
19274442 GTCGGGGGGTGTACGCAAATGATGTG-GAT--GT--TGGTACTTGGCCCTTATATTGG-CCCCTA
169 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTA
*
19274501 TCCCTCATCAAACCTCGAGAACTCACACCCGTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGA
234 TCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-
19274565 CCAGTAGCCATT-AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
19274629 TTCGATTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAAA-ACAAGGATCACGTCTACCAAG
363 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAATACAAGGATCACGTCTACCAAG
*
19274693 TTTGGGGGCC-AAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCACAAAGTTTCAAAAA
427 TTT-GGGGCCAAAAATCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
* * *
19274757 TCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTG
490 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACAAAGGCTTAAGGGACCATTG
19274822 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
555 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
** * * *
19274887 CTACCACCCTATCGATCCACGGCTTGCTTAACCCGTCTCTCTGGCCGACGTTGTCCCCGCCCGCA
620 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGT----G-CC-CA
* * * * ** *
19274952 CGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATT-CCAGTCTAAGAT
679 --CCCACCCGACCACTCGTTTCATCAGTTGGCTTAGGCATACAGAGGTCATTCCCAGTCTAAGAT
*
19275016 CAAACCAGA
742 CAGACCAGA
19275025 CCGAGGGTTT
Statistics
Matches: 1448, Mismatches: 144, Indels: 77
0.87 0.09 0.05
Matches are distributed among these distances:
862 101 0.07
869 1 0.00
871 101 0.07
872 348 0.24
873 240 0.17
874 4 0.00
875 1 0.00
878 1 0.00
882 1 0.00
885 1 0.00
889 80 0.06
890 284 0.20
891 55 0.04
892 24 0.02
893 1 0.00
894 3 0.00
895 2 0.00
896 3 0.00
897 156 0.11
898 41 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (870 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGACGGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTGATCGGCGGCATTAGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACACAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGCCTCTCTGGCCGACGTAGTGCCCACCCACCCGACCACTCGTTTCATCAGTTGGCTTAGGCA
TACAGAGGTCATTCCCAGTCTAAGATCAGACCAGATAGAGGGCTGCGGCAACAAGATCGGCAGCA
CACAGAGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCACCCCTCCGGGCAGCTGAACGCCCGT
AAACTCGGTTCGTGGGGTGACTTAG
Found at i:19276263 original size:719 final size:713
Alignment explanation
Indices: 19274274--19276448 Score: 3169
Period size: 716 Copynumber: 3.0 Consensus size: 713
19274264 CTTAATCTAA
* ** * **
19274274 GCATACGGAGTTCATTCCCAGACTAAGATTGGATCAGA-TCGAGGGTTGGGGCAGCACATGCTGG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACT-GAGGGTTGTAGCAGCACATGCTGG
* * * * *
19274338 GCTC-AGGCTTGTGCTGGTGCCCCATTTTTCTTCACCTGGGCACCATCGCCGGAGCATCACCGGA
64 GCTCGA-GCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCATCGGA
* * *
19274402 GAACCTGACCGGC-AGCATTAGGGTTCCGACGATTGGGGGGGTCGGGGGGTGTACGCAAATGATG
128 GAACCTGACCGGCGA-CATT-GGGTTTCGACGA-TCGGGGGGTCGGGGGGTGTGCGCAAATGATG
19274466 TG-GAT--GT--TGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCA
190 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19274526 CACCCGTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGACCAGTAGCCATT-AAGTGTCTGAAA
255 CACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CCAGTAGCAATTAAAGTGTCTGAAA
* * *
19274589 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTTGCTGAATTTTTTT
319 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGATTTTTTTT
19274654 GTGCATGCCAACAAAAAA-ACAAGGATCACGTCTACCAAGTTTGGGGGCCAAAA-TCCTTCCAAA
384 GTGCATGCCAA-AAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCCAAA
* * * ** * *
19274717 AAAATTTTAAAAAATCCCGAACCGCACAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGT
447 AAAATTTTAAAAAATCCTGAACCACAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGACTCGT
** *
19274782 CTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
512 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATG
* *
19274847 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
577 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACGACTT
** * * * * * *
19274912 GCTTAACCCGTCTCTCTGGCC-GACGTTGTCCCCGCCCGCACGCCCGCCCGCCCACTCGTTTCGT
642 GCGCATCCCGTCTCTCTGGCCGGA-GTAGTGCCTG-CC-CA--CCCTCCCGCCCGCTCGTTTCGT
**
19274976 CGGTTGGCTTAG
702 CGACTGGCTTAG
* * * * * *
19274988 GCATATGGAGTTCATTCCAGTCTAAGATCAAACCAGACCGAGGGTTTTTGCAGCACATGCTAGGC
1 GCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACTGAGGGTTGTAGCAGCACATGCTGGGC
** *
19275053 TCGAGCATGTGCTGGTTTCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGAA
66 TCGAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCATCGGAGAA
* * * *
19275118 CCTGATCGGTGGCATTGGG-TTCGACAATCGGGGGGGTCGGGGGGTGTGCGCAAATGATGTGCGA
131 CCTGACCGGCGACATTGGGTTTCGACGATC-GGGGGGTCGGGGGGTGTGCGCAAATGATGTGCGA
19275182 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
19275247 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGA
260 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGA
19275312 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGATTTTTTTTGTGCAT
325 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGATTTTTTTTGTGCAT
** **
19275377 GCCAAAAAAAATACAAGGATCTTGTCTACCAAGTTT-GGGCCAAAACTCCTTCTGAAAAAATTTT
390 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
* *
19275441 AAAAAATCCTGAAACACAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACGACTCGTCTTGCCAT
455 AAAAAATCCTGAACCACAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGACTCGTCTTGCCAT
* *
19275506 GAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTAAAAGCCATAAAAATGGAATTGGC
520 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGC
* *
19275571 ATGCAGAAACATGAAGATTTGCCTAAAGCCACCTACCACCCTATCGATCCACGACTTGCGCATCC
585 ATGCAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACGACTTGCGCATCC
* *
19275636 CATCTCTCTAGCCGGAGTAGTGCCTGCCCACCCTCCCGCCCGCTCGTTTCGTCGACTGGCTTA-
650 CGTCTCTCTGGCCGGAGTAGTGCCTGCCCACCCTCCCGCCCGCTCGTTTCGTCGACTGGCTTAG
*
19275699 GCATACGGCGTTCATTGCCAGTCTAAGATCAGACCAGACTGAGGGTTGTAGCAGCACATGCTGGG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACTGAGGGTTGTAGCAGCACATGCTGGG
* * *
19275764 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGTCGGAGA
65 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCATCGGAGA
* * ** * *
19275829 ACCTGACCGACGACATTGGGGTTTTGACGATCAAGGGGCCGGGGGGTGTGCGCACATGATGTGCG
130 ACCTGACCGGCGACATT-GGGTTTCGACGATCGGGGGGTCGGGGGGTGTGCGCAAATGATGTGCG
*
19275894 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACA-
* *
19275959 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGT
257 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGG
* * *
19276024 GGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTTTT
322 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGA---TTTTTTTT
* *
19276089 GTGCATGACAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
384 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* *
19276154 AATTTTAGAAAATCCTGAACCACAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGACTTGTCT
449 AATTTTAAAAAATCCTGAACCACAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGACTCGTCT
* * *
19276219 TGCCATGAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTATAAGCCATCAAAATGGC
514 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGC
* * *
19276284 ATTGGCATGCAGAAATATGAAGATGTGCCT-AAGCCCACCTACCAACCTATCGATCAATGACTTG
579 ATTGGCATGCAGAAATATGAAGATGTGCCTAAAG-CCACCTACCACCCTATCGATCCACGACTTG
* *
19276348 CGCATCCCGTCTCTCTGGCTGAAGTAGTGCCTGCCCACCCTCCCGCCCGCTCGTTTCGTCGACTG
643 CGCATCCCGTCTCTCTGGCCGGAGTAGTGCCTGCCCACCCTCCCGCCCGCTCGTTTCGTCGACTG
19276413 GCTTAG
708 GCTTAG
19276419 GCATACGGAGTTCATTCCTAGTCTAAGATC
1 GCATACGGAGTTCATTCC-AGTCTAAGATC
19276449 GGATAGAACC
Statistics
Matches: 1317, Mismatches: 118, Indels: 46
0.89 0.08 0.03
Matches are distributed among these distances:
710 1 0.00
711 50 0.04
712 150 0.11
713 168 0.13
714 60 0.05
715 125 0.09
716 300 0.23
717 124 0.09
718 49 0.04
719 264 0.20
720 26 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (713 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACTGAGGGTTGTAGCAGCACATGCTGGGC
TCGAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCATCGGAGAA
CCTGACCGGCGACATTGGGTTTCGACGATCGGGGGGTCGGGGGGTGTGCGCAAATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGATTTTTTTTGTGCATG
CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
AAAAATCCTGAACCACAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGACTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCA
TGCAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
GTCTCTCTGGCCGGAGTAGTGCCTGCCCACCCTCCCGCCCGCTCGTTTCGTCGACTGGCTTAG
Found at i:19276607 original size:26 final size:26
Alignment explanation
Indices: 19276578--19276630 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19276568 GTTGACTTAG
* *
19276578 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
19276604 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
19276630 G
1 G
19276631 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:19278000 original size:718 final size:717
Alignment explanation
Indices: 19276604--19278070 Score: 2208
Period size: 718 Copynumber: 2.0 Consensus size: 717
19276594 CCCAGTCTAA
* *
19276604 GCATACGGAGTTCATTCACAGTCTAAGATCAAACCGGACCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCACAGTCTAAGATCAAACAGGACCGAGGGTTATGGTAGCACATGCTGGG
* * *
19276669 CTCAGGCATGTGCTGGTGTCATATTTTTCTTCGTCGAGGCACCATCGCCAAAGCATCGTTGGAGA
66 CTCAGGCATGTACTGGTGTCA-ATTTTTCTTCGCCGAGGCACCATCGCCAAAGCATCATTGGAGA
* *
19276734 ACCTGACCAGCGGCATTGCGGTTCCGACGATCTGGGCGGCCGGGGGGGTGTACACACATGATGTG
130 ACCTGACCAGCGGCATTGCGGTTCCGACGATCTGGGCGGCCGGGGGGATATACACACATGATGTG
* * * *
19276799 CGATGGGTGCTGGTACTTGGCCCTTATATTGGTACCTTATCCCTTATCAAACCTCAAGAACTCAC
195 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCAC
*
19276864 ACCCGCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCAATAAAATGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCAATAAAATGTCTAAAAT
*
19276929 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
19276994 TGCATGCCAACAAAAATACAAGGATCATATCTACCAAGTTTGAGGCGAAAACTCCTTCCAAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCATATCTACCAAGTTTGAGGCCAAAACTCCTTCCAAAAAA
* *
19277059 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAGAATAAAAAACGAGTCGCTTG
455 ATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGCTTG
19277124 CCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
19277189 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCTACGACTTGCGC
585 TGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACGC
*** *
19277254 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCCCGCCTGGTCGTTTCGTCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCCCGCCCACTCGTTTCGTCAGTTGGCT
19277319 TAG
715 TAG
* *** *
19277322 GCATACGGAGTTCATTCTCAGTCTAAGATTGGATAGGACCGAGGGTTATGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCACAGTCTAAGATCAAACAGGACCGAGGGTTATGGTAGCACATGCTGGG
* * * *
19277387 CTC-GAGCATTTACTGGTGCTGC-ATTTTTCTTTGCCGAGGCACCATCGTCAGAGCATCATTGGA
66 CTCAG-GCATGTACTGGTG-T-CAATTTTTCTTCGCCGAGGCACCATCGCCAAAGCATCATTGGA
* * *
19277450 GAACCTGACC-GACGGCATTGGGGTTCCGACGATC-GAGGGGGCC-GGGGGATATGCACACATGA
128 GAACCTGACCAG-CGGCATTGCGGTTCCGACGATCTG-GGCGGCCGGGGGGATATACACACATGA
* * *
19277512 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAAC
191 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAAC
* ** * *
19277577 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTA
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCAATAAAATGTCTA
19277642 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * ** ***
19277707 TTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTTTTTTTGA
386 TTTGTGCATGCCAAAAAAAATACAAGGATCATATCTACCAAGTTTGAGGCCAAAACTCCTTCCAA
* ** * *
19277772 AAGAATTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTG
451 AAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCG
*
19277837 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA-AATGCCATAAAAA
516 -CTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-GCCATAAAAA
* *
19277901 TGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
579 TGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGAC
* * * *
19277966 TTATGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCTGCCCGCCCACTCGTTTCGTCAG
644 TTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCCCGCCCACTCGTTTCGTCAG
19278031 TTGGCTTAG
709 TTGGCTTAG
* * *
19278040 GCTTACAGAGTTCATTAACAGTCTAAGATCA
1 GCATACGGAGTTCATTCACAGTCTAAGATCA
19278071 GACCGAACCT
Statistics
Matches: 671, Mismatches: 71, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
717 316 0.47
718 353 0.53
719 1 0.00
720 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (717 bp):
GCATACGGAGTTCATTCACAGTCTAAGATCAAACAGGACCGAGGGTTATGGTAGCACATGCTGGG
CTCAGGCATGTACTGGTGTCAATTTTTCTTCGCCGAGGCACCATCGCCAAAGCATCATTGGAGAA
CCTGACCAGCGGCATTGCGGTTCCGACGATCTGGGCGGCCGGGGGGATATACACACATGATGTGC
AATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCAATAAAATGTCTAAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCATATCTACCAAGTTTGAGGCCAAAACTCCTTCCAAAAAAA
TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGCTTGC
CAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCCCGCCCACTCGTTTCGTCAGTTGGCTT
AG
Found at i:19280865 original size:717 final size:716
Alignment explanation
Indices: 19278986--19281032 Score: 2958
Period size: 717 Copynumber: 2.8 Consensus size: 716
19278976 CTGGTGCCGT
* * *
19278986 ATTTTTCTTCACCGGGCCACCATCGTCGGAGCATCGCCGGAGAACCTGACTGGCAGCATTGGGGT
1 ATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGGCAGCATTGGGGT
* *
19279051 T-TCGGCGATCGGGGGGACCGGTGGCGGGTGTGTGCACATGATGTGCGATGGGTGAC-GGTACTT
66 TCT-GGCGATCGGGGGGGCCGG-GGCGGGTGTGCGCACATGATGTGCGATGGGTG-CTGGTACTT
19279114 AGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATT
128 AGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAGAGCATT
*
19279179 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAA
192 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
19279244 TGGTCACAAAATCTTGTACATTTCGAGCTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
257 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATA
*
19279309 CAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAATCCCGA
321 CAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAA-TTTAAAAAAATCCCGA
* *
19279374 ACAACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
384 ACAACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATTAAACTTCACGT
* *
19279439 GAAGGCTTAAGGGACCATTGTATGAATTTA-AATGCCTTAAAAATGGCATTGGCACGCAAAAATA
449 GAAGGCTTAAGGGACCATTGTATGAATTTACAA-GCCATAAAAATGGCATTGGCACGCAGAAATA
*
19279503 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
513 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGC
* * * * * *
19279568 TCGGCGTAGAGCCCGCCCGCCAGCTCGCCCATCCGTTTTGTCGGTTCGTTTAGGCATACGGAGTT
578 TCGGCGTAGTGCCCGCCCGCCAGCCCGCCCATCCATTTCGTCGGTTCGCTTAGGCATACGAAGTT
** * * * * *
19279633 CATTCCCAATGTAAGATCAGACTGGACCGATGGTTGCTACAGCACATGCTGGGCTCGAGCATGTG
643 CATTCCCAACCTAAAATCAGACTCGACCGAGGGTTGCTA-AGCACATGCTGGGCTCAAGCATGTC
* *
19279698 CTGGTGCCAT
707 CTAGTGCCAC
* * * *
19279708 ATTTTTCTTCGCCGGGGCACCATAGCCAGAGCATCGTCGGAGAACCTGACTGGCAGCATTAGGGT
1 ATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGGCAGCATTGGGGT
* *
19279773 TCTGGCGATCGGGGGAGCCGGGGGCGGGTGTGCGCACATGATGTGCGATGGGTTCTGGTACTTAG
66 TCTGGCGATCGGGGGGGCC-GGGGCGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAG
* * * *
19279838 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACATCCCTTTAAAAAGCACTTG
130 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTG
*
19279903 AGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
194 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* ** * *
19279968 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTTCATTTCAAAAAAAGAAAA
259 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA-TACA
* * * * * ** *
19280033 ATGATCACGTCTACCAAGTTTGGG-GAAGAACGCTTTCCGAAAAAATTTTAAAAAATCTTGAACT
323 AGGATCACGTCTACCAAGTTTGGGCCAA-AACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACA
* * *
19280097 GCAAAAAGTTTCAAAAATCATGAAAATTAGAAAACGAGCCATCTTGCCATTAAACTTCACGTGAA
387 ACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATTAAACTTCACGTGAA
* * * *
19280162 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAACTGGCGCGCAGAAATAAGAA
452 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
*
19280227 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGCTCGG
517 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGCTCGG
* ** * * * *
19280292 CGTAGTGCCCGCCCGCCCGCCCTTCCGTTCATTTCGTCGGTTGGCTTAGGCATACGAATTTCATT
582 CGTAGTGCCCGCCCGCCAGCCCGCCCATCCATTTCGTCGGTTCGCTTAGGCATACGAAGTTCATT
* * * *
19280357 CCCAGCCTAAAATCGGACTCGACTGAGGGTTATGGT-AGCACATGCTGGGCTCAAGCATGTCCTA
647 CCCAACCTAAAATCAGACTCGACCGAGGG-T-TGCTAAGCACATGCTGGGCTCAAGCATGTCCTA
**
19280421 GTGCTGC
710 GTGCCAC
* * ** * * * *
19280428 ATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATTATCGGAGAACTTGACCGACGGCATTGGGGT
1 ATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGGCAGCATTGGGGT
* * * * *
19280493 TCTGACAATCGGGGGGGCC-GGG-GGGTATGCACACATGATGTGCGATGGGTGCTGGTACTTGGC
66 TCTGGCGATCGGGGGGGCCGGGGCGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGC
* *
19280556 CCTTATATTGGACCCCTATCTCTCATCAAACCTCGAGAACTCACACCGCCTTAAAGAGCATTTGA
131 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTAAAGAGCATTTGA
19280621 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
195 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
19280686 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
260 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAA
* **
19280751 GGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCCCGAACCCC
324 GGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACAAC
* * * *
19280816 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTCGCCATTAGACTTCACGTGAAAG
389 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATTAAACTTCACGTGAAGG
* *
19280881 CTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGAAGAAATATGAAGA
454 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
*
19280946 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTAGC-CGGC
519 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GCTCGGC
* * *
19281010 GTAGTGCCTGCCCACCTGCCCGC
583 GTAGTGCCCGCCCGCCAGCCCGC
19281033 TCGTTTCGTT
Statistics
Matches: 1178, Mismatches: 134, Indels: 31
0.88 0.10 0.02
Matches are distributed among these distances:
716 2 0.00
717 458 0.39
718 12 0.01
720 367 0.31
721 29 0.02
722 304 0.26
723 6 0.01
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (716 bp):
ATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGGCAGCATTGGGGT
TCTGGCGATCGGGGGGGCCGGGGCGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGG
ATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACAACAA
AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATTAAACTTCACGTGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGCTCGGCGTA
GTGCCCGCCCGCCAGCCCGCCCATCCATTTCGTCGGTTCGCTTAGGCATACGAAGTTCATTCCCA
ACCTAAAATCAGACTCGACCGAGGGTTGCTAAGCACATGCTGGGCTCAAGCATGTCCTAGTGCCA
C
Found at i:19281458 original size:26 final size:26
Alignment explanation
Indices: 19281428--19281481 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
19281418 TGGGTTGACT
19281428 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
* **
19281454 TAGGCATACGGAGTTCATTTTCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
19281480 TA
1 TA
19281482 AGATCGAACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:19282831 original size:718 final size:718
Alignment explanation
Indices: 19281454--19282836 Score: 2100
Period size: 718 Copynumber: 1.9 Consensus size: 718
19281444 ATTCCCAGTC
* ** **
19281454 TAGGCATACGGAGTTCATTTTCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCCTCACATGCT
1 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCT
* * *
19281519 GGGCTCGAGCATGTACTGGTGTCAAATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAG
66 GGGCTCGAGCATGTACTGGTGCCAAATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCAG
* *
19281584 AGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGTGGCCGGGGGGTGTGCGCACATAATG
131 AGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGTGGCCGGGGGGTGTGCGCACATAATG
** * * *
19281649 TGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCACCTATCTCTCATCAAACCTTGAGCACTC
196 TGCGATGGGTGCCAGTACTTGGCCCTTATATTAGCCACCTATCCCTCATCAAACCTCGAGAACTC
19281714 ACACCCCCTTAAAGAGCATTTGAGATTATACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
261 ACACCCCCTTAAAGAGCATTTGAGATTATACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
*
19281779 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTT
326 ATGGGGACACTTTGTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTT
*
19281844 TGTGCTTGCCAACAAAAATACAAGGACCACATCTACCAAGTTTGGGGCCAGAAATCCTTCCGAAA
391 TGTGCATGCCAACAAAAATACAAGGACCACATCTACCAAGTTTGGGGCCAGAAATCCTTCCGAAA
* * * * *
19281909 AATTTTTAAAAAATCTCGAACCGTAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACAAGTCGTC
456 AAATCTTAAAAAATCCCAAACCATAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACAAGTCGTC
19281974 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGG
521 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGG
* * * *
19282039 CATTGGCACATAGAATTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
586 CACTGGCACATAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACAGCTTC
19282104 CACATCCCGTCTCTCCAACAGGCGTAGTGCCCGCCCGCCTGCCTGCCCGTTCGTTTCGTCGGTTG
651 CACATCCCGTCTCTCCAACAGGCGTAGTGCCCGCCCGCCTGCCTGCCCGTTCGTTTCGTCGGTTG
19282169 GCT
716 GCT
* * *
19282172 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCACATGCT
1 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCT
* * ** * *
19282237 GGGCTTGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCCTCATCGG
66 GGGCTCGAGCATGTACTGGTGCCAAATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCAG
* *
19282302 AGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGG-GG-TGGGCGGGTTGTGCGCACATGA
131 AGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGTGGCCGGG-GGG-TGTGCGCACATAA
* *
19282365 TGTGCGATGGGTGCCAGTACTTGTG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
194 TGTGCGATGGGTGCCAGTACTTG-GCCCTTATATTAGCCACCTATCCCTCATCAAACCTCGAGAA
* * * * **
19282429 CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCGTTTAAAGTGTCT
258 CTCACACCCCCTTAAAGAGCATTTGAGATTATACAGGTTTGCTACCAGTAGCCATTAAAGTGTCT
* *
19282494 GAAATGGGGACACTTTGTTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTTTA-ACTGAATT
323 GAAATGGGGACACTTTGTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGA-TGAATT
* * * * *
19282558 TTTTTTTGCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTT
387 TTTTTGTGCATGCCAACAAAAATACAAGGACCACATCTACCAAGTTTGGGGCCAGAAA-TCCTTC
* *
19282622 C-AAAATAATCTTCAAAAATCCCAAACCATAAAATGTTTTG-AAAATCGTGAAAAATAGAAAACA
451 CGAAAA-AATCTTAAAAAATCCCAAACCATAAAAAG-TTTGAAAAATCGTGAAAAATAGAAAACA
*
19282685 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
514 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATA
19282750 AAAATGGCACTGGCATGCA-A-AAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATC
579 AAAATGGCACTGGCA--CATAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATC
* **
19282813 CACGGCTTCCGTATCCCGTCTCTC
642 CACAGCTTCCACATCCCGTCTCTC
19282837 TGGTCGTCGT
Statistics
Matches: 598, Mismatches: 58, Indels: 18
0.89 0.09 0.03
Matches are distributed among these distances:
716 3 0.01
717 13 0.02
718 574 0.96
719 6 0.01
720 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (718 bp):
TAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCT
GGGCTCGAGCATGTACTGGTGCCAAATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCAG
AGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGTGGCCGGGGGGTGTGCGCACATAATG
TGCGATGGGTGCCAGTACTTGGCCCTTATATTAGCCACCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTATACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTGTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTT
TGTGCATGCCAACAAAAATACAAGGACCACATCTACCAAGTTTGGGGCCAGAAATCCTTCCGAAA
AAATCTTAAAAAATCCCAAACCATAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACAAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGG
CACTGGCACATAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACAGCTTC
CACATCCCGTCTCTCCAACAGGCGTAGTGCCCGCCCGCCTGCCTGCCCGTTCGTTTCGTCGGTTG
GCT
Found at i:19283075 original size:26 final size:26
Alignment explanation
Indices: 19283039--19283091 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19283029 GTTGACTTAG
* *
19283039 GCATACGAAGTTCTTTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
19283065 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
19283091 G
1 G
19283092 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:19283963 original size:26 final size:26
Alignment explanation
Indices: 19283929--19283979 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19283919 TGACTTAGGC
* *
19283929 ATACAGAGTTCGTTCCCAGTTTAAGT
1 ATACAGAGTTCATTCCCAGTCTAAGT
*
19283955 ATACCGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
19283980 ATCAAACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:19284109 original size:879 final size:879
Alignment explanation
Indices: 19282175--19288500 Score: 6949
Period size: 888 Copynumber: 7.1 Consensus size: 879
19282165 GTTGGCTTAG
* * ** *
19282175 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTACGACAGCACATGCTGGG
* * * * *
19282240 CTTGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCCTCATCGGAGA
65 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCA---TC--A----C--CGGAGA
* * **
19282305 ACCTGACCGGCGACATTGGGGTTCC-GACGATCGGGGGGTGGGCGGGTTGTGCGCACATGATGTG
119 ACCTGACCGACGATATTGGGGTTCCTGGTGATC-------GGG-GGG-TGTGCGCACATGATGTG
**
19282369 CGATGGGTGCCAGTACTTGTG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
175 CGATGGGTGCTGGTACTTG-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * **
19282433 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCGTTTAAAGTGTCTGAAA
239 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
19282498 TGGGGACACTTTGTTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAACTGAATTTTTTT
304 TGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
* * *
19282563 TTGCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAT
369 TTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * * **
19282628 AATCTTCAAAAATCCCAAACCATAAAATGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCT
434 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCT
19282693 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
499 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
19282758 ACTGGCATGCA-A-AAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTT
564 ATTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * ** *
19282821 CCGTATCCCGTCTCTCTGGTCGTCGTAGT--------GCCCACCCGCTCTTTTCATCGGTTGGCT
627 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCTTTTTGTCGATTGGCT
** * * * * *
19282878 TAGGCATACGGAGTTCATTCCCAGTCTAAGACCGAATCAGACTGAGGGTT-TTGTAGTAGGATCG
692 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTGGCAGCAGGATCG
* * * * * ** ** *
19282942 GCAGCACGTCGAAGGGGACCCGACCAATCCCCGATTTATGCATCCCGCCCCTCTGGTTGGTTGAG
757 GCAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
19283007 CGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGAAGTTCTTTCCCAGTCTAA
822 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** ** * * *
19283065 GCATACAAAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGATACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTACGACAGCACATGCTGGG
* * * *
19283130 CTCAGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCACCGGACAACCCGACCGAC
65 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGAC
* * * *
19283195 GGCT-TTGGGGTTCC-GATGATCGGGGGGGGCGGGGGGTGTGCGGACAAGATGTGCGATGGGTGC
130 -GATATTGGGGTTCCTGGTGAT---------CGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
19283258 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
185 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
19283323 AGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AGAATGAGGACACT
250 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGAGGACACT
*
19283387 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG-ATTTTTTTTGTGCATACC
314 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTT-TGCATGCC
* * * *
19283451 AA-AAAAAGCACAAGGATCATGTCTACCAAGTTAGGGGCCAAAA-TGCCTTCCGAAAAAATTTTA
378 AACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCAAAAAAATTTTA
* * *
19283514 AAAAATCCCTAACC-TCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAA
441 AAAAATCCCAAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCAT
* * * * *
19283578 AAAACTTCATGTGAGGGCTTAAGTGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGC
505 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
19283643 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
570 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* ** *
19283708 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTTGCT-TTTTTGATCGATCGGCTTAGGCAT
635 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCTTTTTG-TCGATTGGCTTAGGCAT
* * * * ** * * *
19283772 ACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGATTGCAGTAGTAGGATTGGCAGCAC
699 ACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCAC
* * *
19283837 ACT-GAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
764 -GTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
19283901 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCGTTCCCAGTTTAA
828 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
19283953 GTATACCGAGTTCATTCCCAGTCTAAGATCAAACCAGATCAAGGGTTACGATAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTACGACAGCACATGCTGGG
* *
19284018 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGAACTTGACCGGC
65 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGAC
* *
19284083 GATAATAGGGTT-CTGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
130 GATATTGGGGTTCCTGGTGAT---------CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
19284147 CGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
186 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
19284212 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAAT-AGGGACACTT
251 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGA-GGACACTT
* * * *
19284276 TTTTCAAATGGTCACAAAAACTTGTACACCTTGAGTTTTTAGCTGAATTTTTTTTCGCATGCCCA
315 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAA
* * * * *
19284341 CAAAAATATAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAT
380 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
*
19284406 ATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAC
445 ATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAC
*
19284471 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATA
510 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATA
* * * * *
19284536 AAAATATGAAGGTGTGCCTAAACACACCTACCACCCTATCGATCCACCGCTTGCGCATCTCGTCT
575 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
** * * * *
19284601 CTCTGGGTGGCGTAGTGCCCGCTTGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
640 CTCTGGCCGGCGTAGTG-CC-C--GCCCGCCCGCCCGCTCTTTTTGTCGATTGGCTTAGGCATAC
* * * * * *
19284666 AGAGTTCATTCCCAGCCTAAGATTAGATCGGACCGAGGGTTATGGCAGCAGGATCGGCAGCATG-
701 GGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGT
* * * * * *
19284730 AGAATGGGGACCCGATCGATCCCCGACTTGCGCGTCCCACCCCTCTGGTCGGTTGAGCGCCCGAA
766 AG-AGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
19284795 AGTTCGTTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
830 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** ** * *
19284845 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTACGACAGCACATGCTGGG
** * * * * *
19284910 CTCAAGCATGTGCTGGTGCCGTATTTTTCTTCATCAGGGTGCCATCATCGGAGCCTCGCCGGAAA
65 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTC-GGG-G-CA-C--C--A---TCACCGGAGA
* * ** * *
19284975 ACCTGACAGGCGGCATTGGGGTTCCGACGATCGGGGGGTCGGGCGGGTTGTGCGCACATGATGTG
119 ACCTGACCGACGATATTGGGGTT-C--C--T--GGTGATCGGG-GGG-TGTGCGCACATGATGTG
** *
19285040 CGATGGGTGCCAGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
175 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19285105 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTCAAAT
240 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19285169 GGGGACACTTTGTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTT
305 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTT
* ** *
19285234 TGCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTTTTTCAAAAAA
370 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * *
19285299 ATCTTGAAAAATCCCAAACCGTAAAATGTTTCGAAAATCATGAAAAATAGAAAACAAGTCGTCTT
435 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTT
*
19285364 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCA
500 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
19285429 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCCACAGCTTGTG
565 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
19285494 CATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGTCCGCCCGCT-TGTTTCGTC-AGTTGGCTT
630 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCT-TTTTGTCGA-TTGGCTT
* ** * *
19285557 AGGCATACGGAGTCCATTCCCAGTCTAAGATCCGA-CTAGACTGAGGGTTGTGGCAGTAGGATCG
693 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATC-AGACCGAGGGTTGTGGCAGCAGGATCG
** * * * * * *
19285621 AAAGCACGTAGAGAGGGACCTGATCGATCTCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGGG
757 GCAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
19285686 CACCCGCACGCTCATTTCATGGGTTGACTTAGGCACACGGAGTTCATTCCCAGTCTAA
822 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * *
19285744 GCCTACGGAGTTCATTCTCAGTCTAAGATCAGACCAAACCGAGAGTTGTGACAACACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTACGACAGCACATGCTGGG
*
19285809 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCAT--------CA---CCGGAGA
** * * * *
19285874 ATTTGACCAGCCG-CATTGGGGTTCCGACGATCGGGTGGTCGGGGGGGGTGTGCACACATGATGT
119 ACCTGACC-GACGATATTGGGGTT-C--C--T--GGTGATC--GGGGGGTGTGCGCACATGATGT
* *
19285938 GCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCA
174 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
19286003 CACCCCCTTGAAGAACATTTGAGATTTTACAGATTTGCTGCCAGTAGCCACTAAAGTGTCTGAAA
239 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
19286068 TGAGGACACTTTTATCAAATGGTCACAAAATCTTATACACTTCGTA-TTTTTAGCTAAATTTTTT
304 TGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG-AGTTTTTAGCTGAATTTTTT
* * *
19286132 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCCAAAA
368 TTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* ** * * *
19286197 AAATTTTAAAAAACCCCAAACCACAAAAATTTTCGAAAAA-CGTGAAAAATAAAAAACGAGTCGT
433 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTC-AAAAATCGTGAAAAATAGAAAACAAGTCGT
* * *
19286261 CCTACCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATG
497 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
19286326 GCATTGGCACCAAAAAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCTACGGCT
562 GCATTGGCA-CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
19286391 TGTGCATCCCGTCTCTCTCGTCGGCGTAGTGCTCGCCCGCCCGCCCGCTCGTTTTGTCCG-TTGG
626 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCTTTTTGT-CGATTGG
* **
19286455 CTTAGGCATACGAAGTTCATT-CCAGTCTAAGATTGGATTGGACCGAGGGTTGTGGCAGCAGGAT
690 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTGGCAGCAGGAT
**** ** * *
19286519 CAATGGCACGCCGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
755 CGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *** * * * * *
19286584 AGTGCCCGCATAATTGTTTTGTGGGTTGACTTAGGGATATGGAGTTCTTTCCCAGTCTAA
820 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19286644 GCATACGGAGTTCATTCCCTGTCTAAGATCAAACCAGACTGAGGGTT--GTAGCAGCACACGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTACG-A-CAGCACATGCTG
* * * * *
19286707 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGAACCTGATCG
63 GGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCG
* * ** *
19286772 ACGACATTGGGGTTACGACGATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTGCGATGGGTGC
128 ACGATATTGGGGTT-C--C--T---GGTGATCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
19286837 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
185 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
19286902 AGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAATGGGGACAC-T
250 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTT
* * * *
19286966 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCGAATTGTTTTGTGCATGCCAA
315 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAA
* * *
19287031 CAAAAATACAAGGATCATGTCTACCAAATTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAA
380 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* * * * *
19287096 ATCTCGAGCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAAC
445 ATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAC
19287161 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GC-CATG
510 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT-
*
19287224 CAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
574 -AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * **
19287289 CTCTCTGGCTGGCATAGTGCCCGTCCGCCCACCCGCCCTCTCGTTTCATCAGA-TGGCTTAGGCA
638 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG--CTCT--TTTTGTC-GATTGGCTTAGGCA
* * * ** * *
19287353 TATGGAGTTCATTCCCAGTCTAAGATTGAATCAGACCGAAGGTTACGACAGCAGGATCGGTAGCA
698 TACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCA
** *
19287418 CGTAGAGGGGGACCC-AGTCGATCCCCGACTTATGCATCCCGCCCCTCTGGCCGGCTGAGTGCCC
763 CGTAGAGGGGGACCCGA-TCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
19287482 GCACGCTCGTTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAA
827 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
19287535 G-AT-C--AG---A----C---C-AA-AT-------G--GAGGGTTACGGTAGCACATTTTTCTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTACGACAGCACA---TGCTG
** ** ** ** * * * * * ** *
19287575 TAC-CGGGGCACCAT-C-GCCGAAGCA----TC-AC-T-AGAGAACC-TGACCGG-GGGCATTG-
63 GGCTC-GGGCA-TGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGAAC-CTGA
* * * ** * ** * * **
19287627 --G--GGT-TTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACTTGATGTGCAATGGGTGCCAG
125 CCGACGATATT-GGGGTTCCTGGTGATC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
19287687 TAATTGTG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAG
188 TACTTG-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
19287751 AGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTG
252 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTT
* *
19287816 TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTCCATGCCAAAA
317 TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACA
* * * *
19287881 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAAATTTTAAACAAT
382 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
* * * * * * **
19287946 CCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAGTAAAAAATGAGTCGTCTTGCCATGAAACTT
447 CCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTT
* * * ***
19288011 CACGTGAAGGCTTAAGGGACCATTGTGTGAATTTGCAAGCCATAAAAATGGCATTCGCATGCAGA
512 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGA
*
19288076 AATATGAAGATGTGCC-AAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCT
577 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * *
19288140 CTGGCCGGCGTAGTGCCTGCCCGCTCGCCCGCCCGTTCGTTTCGTC-AGTTGGCTTAAGCATACG
642 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTC-TT--TTT-GTCGA-TTGGCTTAGGCATACG
** * * * * *
19288204 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAACAGGATCAGCAGCATGTA
702 GAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTA
* * * * * *
19288269 AAGGGGGATCCGATCAATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACG
767 GAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * *
19288334 TTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
832 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
19288382 GCATACGGAGTTCATTCTCAGTCTAAGATCGGATCGGACAGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTACGACAGCACATGCTGGG
* *
19288447 CTCGGGCATGTGCTGGTGCCGCATTTTTGCTTTGTCGGGGCACCATCACCGGAG
65 CTCGGGCATGTGCTGGTGTCGCATTTTT-CTTCGTCGGGGCACCATCACCGGAG
19288501 CATCGCCGAA
Statistics
Matches: 4642, Mismatches: 622, Indels: 353
0.83 0.11 0.06
Matches are distributed among these distances:
844 1 0.00
845 3 0.00
846 10 0.00
847 388 0.08
848 251 0.05
849 3 0.00
851 2 0.00
853 3 0.00
854 6 0.00
856 1 0.00
858 3 0.00
859 7 0.00
860 5 0.00
861 1 0.00
862 3 0.00
863 4 0.00
865 13 0.00
867 6 0.00
868 10 0.00
869 2 0.00
870 11 0.00
871 6 0.00
873 16 0.00
875 3 0.00
876 3 0.00
877 3 0.00
878 20 0.00
879 462 0.10
880 11 0.00
881 5 0.00
884 3 0.00
885 1 0.00
886 99 0.02
887 291 0.06
888 850 0.18
889 50 0.01
890 129 0.03
891 147 0.03
892 259 0.06
893 8 0.00
894 1 0.00
895 3 0.00
896 4 0.00
897 1 0.00
898 6 0.00
899 375 0.08
900 526 0.11
901 128 0.03
902 7 0.00
903 407 0.09
904 79 0.02
907 1 0.00
909 1 0.00
911 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (879 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTACGACAGCACATGCTGGGC
TCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGACG
ATATTGGGGTTCCTGGTGATCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAA
GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCG
TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
GTAGTGCCCGCCCGCCCGCCCGCTCTTTTTGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATTGGATCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGAT
CGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19284855 original size:26 final size:26
Alignment explanation
Indices: 19284819--19284871 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19284809 GTTGACTTAG
19284819 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19284845 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19284871 G
1 G
19284872 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19288392 original size:26 final size:26
Alignment explanation
Indices: 19288356--19288408 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19288346 GTTGACTTAG
19288356 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
19288382 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19288408 G
1 G
19288409 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19289448 original size:26 final size:26
Alignment explanation
Indices: 19289419--19289471 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19289409 GTTGAATTAG
19289419 GCATACGGAGTTCATTC-CTAGTCTAA
1 GCATACGGAGTTCATTCGC-AGTCTAA
19289445 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
19289471 G
1 G
19289472 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCGCAGTCTAA
Found at i:19290785 original size:903 final size:905
Alignment explanation
Indices: 19289387--19291045 Score: 2806
Period size: 903 Copynumber: 1.8 Consensus size: 905
19289377 GCCGGCTGAA
* * * * *
19289387 CGCCCGCACGGTCGTTTTGTGGGTTGAATTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGCGGGTTGAACTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* *
19289452 GAGTTCATTCGCAGTCTAAGATCGGACCGGGCCGAGGGTTTCGACAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCGCAATCTAAGATCGGACCGGACCGAGGGTTTCGACAGCACATGCTGGGCTCGGGC
*
19289517 ATGCACTGCTGCCTCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCACCGGGGAACCTGAC
131 ATGCACTGCTGCCTCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGAC
* * * *
19289582 TGATGGCATTGGGGTTCCGACGATCGGGGGGGGCTGGGGGGGTGTGCACACATGATGTATGATGG
196 CGATGGCATTGGCGTTCCAACGATCGGGGGGGGCTGGGGGGGTGTGCACACATGATGTACGATGG
*
19289647 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCACACCCCC
261 GTGCTGCTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCACACCCCC
* *
19289712 TTAAAGAGCATTTCAGATTTTACAGGTTTGTTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
326 TTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
19289777 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
391 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
19289842 CCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAAATCCTTCT-GAAAAAATTTA
456 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CTTCTCGAAAAAATTTA
* * *
19289906 AAAAAATCTCGAACCT-TAAAAAGTTTTGAAAATCATGAAAAATAGAAAACTAGTCCTCTTGCCA
520 AAAAAATCCCGAA-CTGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCCTCTTGCCA
* * * *
19289970 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
584 TGAAACTTCACGTGAAGGCTTAAGCGACCATTGTAGGAACTTACAAGCCATAAAAATGGCACTGG
*
19290035 CACACACAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
649 CACACAAAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
19290100 CCGTCTCTTTGGCC-AGCGTAGTGCCCGCCCGCCCACCCACCCGTTCATTTCGTCGATTTGCTTA
714 CCGTCTCTCTAGCCGA-CGTAGTGCCCGCCCGCCCACCCACCCGTTCATTTCGTCGATTTGCTTA
19290164 GGGATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCATGGGTTGTGGTAGTAGGCTCGGC
778 GGGATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCATGGGTTGTGGTAGTAGGCTCGGC
19290229 AGCACACAGAGGGGGACCCAACTGATCCTCGGCTTACGCATCCCACCCCTCTGGCCAGTTAAG
843 AGCACACAGAGGGGGACCCAACTGATCCTCGGCTTACGCATCCCACCCCTCTGGCCAGTTAAG
* * *
19290292 CGCCCGCACGCTTGTTTCGCGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACG
1 CGCCCGCACGCTCGTTTCGCGGGTTGAACTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
19290357 GAGTTCATTC-CAATCTAAGATCGGACCGGACCGAGGGTTTCGACAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCGCAATCTAAGATCGGACCGGACCGAGGGTTTCGACAGCACATGCTGGGCTCGGGC
** **
19290421 ATGCGTTGCTGCCTCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
131 ATGCACTGCTGCCTCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGAC
19290486 CGATGGCATTGGCGTTCCAACGATC-GGGGGGGCTGGGGGGGTGTGCACACATGATGTACGATGG
196 CGATGGCATTGGCGTTCCAACGATCGGGGGGGGCTGGGGGGGTGTGCACACATGATGTACGATGG
19290550 GTGCTGCTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCACACCCCC
261 GTGCTGCTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCACACCCCC
* *
19290615 TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
326 TTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
19290680 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATG
391 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
19290745 CCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCTTTTCGAAAAAATTTTA
456 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTCTCGAAAAAATTTAA
* * *
19290810 AAAAATCCCGAATTGTAAAAAGTTTTAAAAATCATGAAAATTAGAAAACGAGTCGTCTTGCCATG
521 AAAAATCCCGAACTGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCCTCTTGCCATG
*
19290875 AAACTTCAGGTGAAGGCTTAAGCGACCATTGTAGGAACTTACAAGCCATAAAAATGGCACTGGCA
586 AAACTTCACGTGAAGGCTTAAGCGACCATTGTAGGAACTTACAAGCCATAAAAATGGCACTGGCA
** * *
19290940 TGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
651 CACAAAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
19291005 GTCTCTCTAGTCGACGTAGTGCCCGCCCGCCCGCCCACCCG
716 GTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCACCCG
19291046 CCTGCCCGCT
Statistics
Matches: 701, Mismatches: 50, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
902 5 0.01
903 494 0.70
904 135 0.19
905 67 0.10
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (905 bp):
CGCCCGCACGCTCGTTTCGCGGGTTGAACTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
GAGTTCATTCGCAATCTAAGATCGGACCGGACCGAGGGTTTCGACAGCACATGCTGGGCTCGGGC
ATGCACTGCTGCCTCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGAC
CGATGGCATTGGCGTTCCAACGATCGGGGGGGGCTGGGGGGGTGTGCACACATGATGTACGATGG
GTGCTGCTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTCTCGAAAAAATTTAA
AAAAATCCCGAACTGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCCTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGCGACCATTGTAGGAACTTACAAGCCATAAAAATGGCACTGGCA
CACAAAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCACCCGTTCATTTCGTCGATTTGCTTAGGG
ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCATGGGTTGTGGTAGTAGGCTCGGCAGC
ACACAGAGGGGGACCCAACTGATCCTCGGCTTACGCATCCCACCCCTCTGGCCAGTTAAG
Found at i:19292874 original size:12 final size:12
Alignment explanation
Indices: 19292857--19292887 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
19292847 GTGCTGGTAC
19292857 TTGGCCCTTATA
1 TTGGCCCTTATA
19292869 TTGGCCCTTATA
1 TTGGCCCTTATA
19292881 TTGGCCC
1 TTGGCCC
19292888 CCTATCCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.29, G:0.19, T:0.39
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:19294038 original size:718 final size:718
Alignment explanation
Indices: 19292646--19294119 Score: 2046
Period size: 718 Copynumber: 2.0 Consensus size: 718
19292636 CCCAGTCTAA
* * * * * *
19292646 GCATACGGAGTTCATTCTCAATCTAGGATTGGACCGGACCAAGGGTTGCGATAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACCAAGGGTTGCGACAGCACATGCTGGG
* * *
19292711 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGTATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCACCAGAGCATCGTCGGAGA
* * * * *
19292776 ACCTGACCGACGGCATTGGAGTTTCAGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTA
131 ACCTGACCGACGGCATTGAAGGTTCAGTGATCGAGGGGGCCGGGGGGGTGTGCGCACAAGATATA
19292841 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
196 CGATGGGTGC--GTA--TGG--C--ATATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
19292906 TCGAGAACTCACACCCGCTTAAAGAGCATTTGAATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
253 TCGACAACTCACACCCGCTTAAAGAGCATTTGAATGTTACAGGTTGGCTGCCAGTAGCCATTAAA
* * *
19292971 GTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCT
318 GTGTCTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCT
* * * * *
19293036 GAATTTTTTTGTGCATGCCAACAAAAATACAATGATCGCGTTTACCAAGTTTGGGTCCAAAACTC
383 GAATTTTTTTCTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* ** ** *
19293101 CTTCCAAAAAAATTTTAAAAAATCCCAAATTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
448 ATTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* * *
19293166 TGAGTCATCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCA
513 CGAGTCATCTTGCCACGAAACTTCACGTGAAAGCTTAAGGGACCATTATATGAATTTAAAAGCCA
* * * * **
19293231 TAAAAATGGCTTTGGCATGCAGAAATATGAATATGTGTGTAAACCCACCTACCACCCTATCGATC
578 TAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
** * * * * **
19293296 CATGGCTTGCGCATCTCGTCTCTCTGCCTGGCGTAGTGCCTGCCCGCCCGCCCTCTCGCTCGTTT
643 CACAGCTTGCGCATCCCATCTCTCTGCCTGACATAGTGCCCACCCGCCCG--C-C-CGCTCGTTT
*
19293361 CGTCAGTTGGCTTAG
704 CGTCAGTTGGCTTAC
* * *
19293376 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACCAAGGGTTGCGA-CAGCACATGCTGG
* *
19293440 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACTAGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCACCAGAGCATCGTCGGAG
* **
19293505 AACCTGACCGGCGGCATT-AAGGTTCAGGTGATCGAGGGGGCCGGGGGGGTGTGCGCGTAAGATA
130 AACCTGACCGACGGCATTGAAGGTTCA-GTGATCGAGGGGGCCGGGGGGGTGTGCGCACAAGATA
* * *
19293569 TGCGATGGGTGC-TA-GG-A-CTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACGTCGACA
194 TACGATGGGTGCGTATGGCATATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACA
*
19293629 ACTCACACCC-CTTTAAAGAGCATTTTAGATGTTACAGGTTGGCTGCCAGTAGCCATTAAAGTGT
259 ACTCACACCCGC-TTAAAGAGCATTTGA-ATGTTACAGGTTGGCTGCCAGTAGCCATTAAAGTGT
19293693 CTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAAT
322 CTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAAT
** *
19293758 TTTTTTCTGCATGCCAACAAAAATACAAGGATCACGTCTAGTAAGTTTGGGGCCAAAAGTCATTC
387 TTTTTTCTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTC
* *
19293823 CAAAAAAATTTTTAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
452 CAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* * * *
19293888 TCGTCTTGCCATGAAACTTCATGTGAAAGCTTAAGGGACCATTATATGAATTTACAAGCCATAAA
517 TCATCTTGCCACGAAACTTCACGTGAAAGCTTAAGGGACCATTATATGAATTTAAAAGCCATAAA
*
19293953 AATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCCACA
582 AATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACA
* * * * *
19294018 GCTTGTGCATCCCATCTCTCTGGCTGACATAGTGCCCACCCGTCCGCCCGTTCGTTTCGTCGGTT
647 GCTTGCGCATCCCATCTCTCTGCCTGACATAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTT
19294083 GGCTTAC
712 GGCTTAC
* *
19294090 GTATACGGAGTTCATTCGCAATCTAAGATC
1 GCATACGGAGTTCATTCCCAATCTAAGATC
19294120 AGACTGAACT
Statistics
Matches: 660, Mismatches: 80, Indels: 24
0.86 0.10 0.03
Matches are distributed among these distances:
714 47 0.07
715 1 0.00
716 2 0.00
717 40 0.06
718 385 0.58
719 1 0.00
724 2 0.00
727 2 0.00
729 7 0.01
730 173 0.26
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (718 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACCAAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCACCAGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGAAGGTTCAGTGATCGAGGGGGCCGGGGGGGTGTGCGCACAAGATATA
CGATGGGTGCGTATGGCATATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAAC
TCACACCCGCTTAAAGAGCATTTGAATGTTACAGGTTGGCTGCCAGTAGCCATTAAAGTGTCTAA
AATGGGAACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTT
TTCTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCCAAA
AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
CTTGCCACGAAACTTCACGTGAAAGCTTAAGGGACCATTATATGAATTTAAAAGCCATAAAAATG
GCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
GCGCATCCCATCTCTCTGCCTGACATAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCT
TAC
Found at i:19294286 original size:26 final size:26
Alignment explanation
Indices: 19294249--19294301 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19294239 GTTGACTTAG
*
19294249 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19294275 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19294301 G
1 G
19294302 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19294825 original size:896 final size:898
Alignment explanation
Indices: 19293376--19296835 Score: 4763
Period size: 900 Copynumber: 3.9 Consensus size: 898
19293366 GTTGGCTTAG
* *
19293376 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGC-AGCAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGA-CAGCACATGCTGG
** *
19293440 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACT-AGAGCATCGTCGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCTCTGA-AGCATCGTCGGA
* * ** * *
19293504 GAACCTGACCGGCGGCATTAAGGTTCAGGTGATCGAGGGGGCCGGGGGGGTGTGCGCGTAAGATA
129 GAACCTGACCGGCGGCATTAAGGTTCCGGCGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATG
* * *
19293569 TGCGATGGGTGCTAGGACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACGTCGACAACTC
192 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * *
19293633 ACACCCCTTTAAAGAGCATTTTAGATGTTACAGGTTGGCTGCCAGTAGCCATTAAAGTGTCTAAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
19293698 ATGGGAACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** * *
19293763 TCTGCATGCCAACAAAAATACAAGGATCACGTCTAGTAAGTTTGGGGCCAAAAGTCATTCCAAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
* * *
19293828 AAATTTTTAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
19293893 TTGCCATGAAACTTCATGTGAAAGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
19293958 CATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCCACAGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * *
19294023 TGCATCCCATCTCTCTGGCTGACATAGTGCCCACCCGTCCGCCCGTTCGTTTCGTCGGTTGGCTT
647 CGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTT
* * *
19294088 ACGTATACGGAGTTCATTCGCAATCTAAGATC-AGACTGAACTGAGGGTTGAGGCAGCAGGATCG
712 AGGCATACGGAGTTCATTCGCAGTCTAAGATCGA-ACTGAACTGAGGGTTGAGGCAGCAGGATCG
* *
19294152 GTAGCACGCAGAAGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAG
776 GTAGCACGTAGAAGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
* **
19294217 TGCCCGCACGCTCGTTTAATGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 CGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19294275 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGTCCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * * * * *
19294340 CTCGGGCATGTGCTGGTGTCATATTTTTCTTCGTAGAGGCACCATCTCTGAAGCATCGTCGAAAA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCTCTGAAGCATCGTCGGAGA
* * * *
19294405 ACCTAACCGGCGGCATTAAGGTTCCGGTGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTACG
131 ACCTGACCGGCGGCATTAAGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * *
19294470 ATGGGTGCTCGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTTGAGAACTCATAC
196 ATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
19294535 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTATAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
19294600 GGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ACTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
19294663 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAAT
* * ** *
19294728 TTTAAAAAATC-CTGAATCATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTCG
456 TTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
19294792 CCATGAAACTTCCCGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
19294857 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC-CCCCATCGATCCACGGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
19294921 ATCCCGTCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGTCCGCTCATTTCATCGGTTTGCTTAGA
650 ATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGG
* * * * * *
19294986 CATACGGAGTTCATTCTCAGTCTAAGA-CTGAACTGGATTGAGGGTT-ACGGCAACAGGATTGGC
715 CATACGGAGTTCATTCGCAGTCTAAGATC-GAACTGAACTGAGGGTTGA-GGCAGCAGGATCGGT
* * * * * * * * *
19295049 AGCACATAGAGGGGGAC-CCGACTGATTCCCGGCTTGTGCATCCCGCCCCTCTAGTCGGCTGAGC
778 AGCACGTAGAAGGGGACTCGGTC-GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGC
* * * *
19295113 GCCTGCACGCTCGTTCCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAA
842 GCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
19295170 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * ** * *
19295235 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGCACCATCGTC-GGAGCATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC-TCTGAAGCATCGTCGGAG
* * * * *
19295299 AACTTGACCGGCGGCATT-GGGTTCTGGCGATCGGGGTGGCTGGGGGGGTGTGTGCACATGATGT
130 AACCTGACCGGCGGCATTAAGGTTCCGGCGATCGGGG-GGC-CGGGGGGTGTGCGCACATGATGT
* * * *
19295363 GCGATGGGTGCTATTACATGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19295428 CACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
19295493 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
19295558 GTGCATTCCAA-AAAAATACGAGGATCTCGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
* * *
19295622 AATTTTAAAAAATCTCGAACTGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
19295687 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCTATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
19295752 ATTGGCATGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** ** *
19295817 ACATCCCGTCTCTCTGG-TCGACGTAGTGCCCGCCCGCCCGCCCGTCCGTTTGTTTTGTCAGTTG
648 GCATCCCGTCTCTCTGGCT-GACGTAGTGCCCGCCCGCCCGCCCG--C--TCATTTCATCGGTTG
* * * *
19295881 GCTTAGGCATACGGAGTTCATTCTG-AGTCTAAGATCGAAC-CAGACCGAGGGTTGCA-GCTGTA
708 GCTTAGGCATACGGAGTTCATTC-GCAGTCTAAGATCGAACTGA-ACTGAGGGTTG-AGGCAGCA
* * *
19295943 GGATCGGTAGCACGTAG-AGAGGGACTCGGTCGATCCTCAGTTTGCGCATCCCACCCCTCTGGCC
770 GGATCGGTAGCACGTAGAAG-GGGACTCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCC
* * *
19296007 GGTTGAGCGCCCGTAGGCTCGTTTCGT-AGGTTGACTTAGGCATA-GGAGTTCATTCCCAGTCTA
834 GGCTGAGCGCCCGCACGCTCGTTTCGTGA-GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
19296070 A
898 A
* * * ** * *
19296071 GCATAC-AGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGTAGTACATACTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGG
* * * * *
19296135 GCTCAGGG-ATGTGCTGGTGTCACATTTTTCTTCGTCGCGGCACCATCTCCGGAGCACCGTCGGA
65 GCTC-GGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCTCTGAAGCATCGTCGGA
* * * ** **
19296199 GAACTTGATCGACGGCATTGCGGTTCCAACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
129 GAACCTGACCGGCGGCATTAAGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
19296264 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
19296329 ACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAATAGCCATTAATGTGTCTGACAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
19296394 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** *
19296459 TGCATGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGAGAAAAATCCTT-CTAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
* ** *
19296523 TTTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACTAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * * * *
19296588 GCCATAAAACTACACGTGAATGCTTAAGGGACCGTTGTATGAATTTACAAGCCACAAAAATGGAA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
19296653 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCAATACACGGCTCGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
19296718 CATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGTCCGCTCATTTCATCGGTTGGCTTAG
649 CATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAG
* * * * *
19296783 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCA
714 GCATACGGAGTTCATTCGCAGTCTAAGATCGAACTGAACTGAGGGTTGAGGCA
19296836 AACATGCTGG
Statistics
Matches: 2265, Mismatches: 259, Indels: 77
0.87 0.10 0.03
Matches are distributed among these distances:
894 20 0.01
895 349 0.15
896 437 0.19
897 357 0.16
898 168 0.07
899 148 0.07
900 441 0.19
901 189 0.08
902 151 0.07
903 4 0.00
904 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCTCTGAAGCATCGTCGGAGA
ACCTGACCGGCGGCATTAAGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAAT
TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGC
ATACGGAGTTCATTCGCAGTCTAAGATCGAACTGAACTGAGGGTTGAGGCAGCAGGATCGGTAGC
ACGTAGAAGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19295173 original size:26 final size:26
Alignment explanation
Indices: 19295144--19295196 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19295134 GTTGACTTAC
*
19295144 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19295170 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19295196 G
1 G
19295197 ATCGGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19295791 original size:897 final size:899
Alignment explanation
Indices: 19293376--19296836 Score: 4777
Period size: 896 Copynumber: 3.9 Consensus size: 899
19293366 GTTGGCTTAG
* *
19293376 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGC-AGCAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGA-CAGCACATGCTGG
* ** * *
19293440 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACTAGAGCATCGTCGGAG
65 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCTCTGGAGCATCGTCGGAG
* * ** * *
19293505 AACCTGACCGGCGGCATTAAGGTTCAGGTGATCGAGGGGGC-CGGGGGGGTGTGCGCGTAAGATA
130 AACCTGACCGGCGGCATTAAGGTTCCGGCGATCG-GGGGGCTC-GGGGGGTGTGCGCACATGATG
* * *
19293569 TGCGATGGGTGCTAGGACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACGTCGACAACTC
193 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * *
19293633 ACACCCCTTTAAAGAGCATTTTAGATGTTACAGGTTGGCTGCCAGTAGCCATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
19293698 ATGGGAACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** * *
19293763 TCTGCATGCCAACAAAAATACAAGGATCACGTCTAGTAAGTTTGGGGCCAAAAGTCATTCCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
* * *
19293828 AAATTTTTAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
19293893 TTGCCATGAAACTTCATGTGAAAGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
19293958 CATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCCACAGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * * * *
19294023 TGCATCCCATCTCTCTGGCTGACATAGTGCCCACCCGTCCGCCCGTTCGTTTCGTCGGTTGGCTT
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCTCATTTCATCGGTTGGCTT
* * * * * * *
19294088 ACGTATACGGAGTTCATTCGCAATCTAAGATC-AGACTGAACTGAGGGTTGA-GGCAGCAGGATC
713 AGGCATACGGAGTTCATTCTCAGTCTAAGATCGA-ACCGGACTGAGGGTT-ACGGCAACAGGATC
* * * *
19294151 GGTAGCACGCAGAAGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGA
776 GGTAGCACGTAGAGGGGGACTCGGTCGATTCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGA
* ** *
19294216 GTGCCCGCACGCTCGTTTAATGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19294275 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGTCCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * * * * * * *
19294340 CTCGGGCATGTGCTGGTGTCATATTTTTCTTCGTAGAGGCACCATCTCTGAAGCATCGTCGAAAA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCTCTGGAGCATCGTCGGAGA
* * *
19294405 ACCTAACCGGCGGCATTAAGGTTCCGGTGATCGGGGGG-TCGGGGGGTGTGCGCACATGATGTAC
131 ACCTGACCGGCGGCATTAAGGTTCCGGCGATCGGGGGGCTCGGGGGGTGTGCGCACATGATGTGC
* * * *
19294469 GATGGGTGCTCGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTTGAGAACTCATA
196 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19294534 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTATAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
19294599 GGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ACTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
19294662 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAA
* * ** *
19294727 TTTTAAAAAATC-CTGAATCATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTC
456 TTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
19294791 GCCATGAAACTTCCCGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
19294856 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC-CCCCATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
19294920 CATCCCGTCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGTCCGCTCATTTCATCGGTTTGCTTAG
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCTCATTTCATCGGTTGGCTTAG
* * * * *
19294985 ACATACGGAGTTCATTCTCAGTCTAAGA-CTGAACTGGATTGAGGGTTACGGCAACAGGATTGGC
715 GCATACGGAGTTCATTCTCAGTCTAAGATC-GAACCGGACTGAGGGTTACGGCAACAGGATCGGT
* * * * * * *
19295049 AGCACATAGAGGGGGAC-CCGACTGATTCCCGGCTTGTGCATCCCGCCCCTCTAGTCGGCTGAGC
779 AGCACGTAGAGGGGGACTCGGTC-GATTCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGC
* * *
19295113 GCCTGCACGCTCGTTCCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAA
843 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
19295170 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* ** *
19295235 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGCACCATCGTC-GGAGCATCATCGGAG
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC-TCTGGAGCATCGTCGGAG
* * * * *
19295299 AACTTGACCGGCGGCATT-GGGTTCTGGCGATCGGGGTGGCTGGGGGGGTGTGTGCACATGATGT
130 AACCTGACCGGCGGCATTAAGGTTCCGGCGATCGGGG-GGCTCGGGGGGTGTGCGCACATGATGT
* * * *
19295363 GCGATGGGTGCTATTACATGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19295428 CACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
19295493 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
19295558 GTGCATTCCAA-AAAAATACGAGGATCTCGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
* * *
19295622 AATTTTAAAAAATCTCGAACTGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
19295687 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCTATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
19295752 ATTGGCATGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * ** ** *
19295817 ACATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGTCCGTTTGTTTTGTCAGTTGG
649 GCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGTCCGCTCATTTCATCGGTTGG
* * * * * ***
19295882 CTTAGGCATACGGAGTTCATTCTGAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCTGTAGGAT
710 CTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGAACCGGACTGAGGGTTACGGCAACAGGAT
* * * *
19295947 CGGTAGCACGTAGAGAGGGACTCGGTCGA-TCCTCAGTTTGCGCATCCCACCCCTCTGGCCGGTT
775 CGGTAGCACGTAGAGGGGGACTCGGTCGATTCC-CGGCTTGCGCATCCCACCCCTCTGGCCGGCT
* * *
19296011 GAGCGCCCGTAGGCTCGTTTCGTAGGTTGACTTAGGCATA-GGAGTTCATTCCCAGTCTAA
839 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * *
19296071 GCATAC-AGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGTAGTACATACTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGG
* * * * *
19296135 GCTC-AGGGATGTGCTGGTGTCACATTTTTCTTCGTCGCGGCACCATCTCCGGAGCACCGTCGGA
65 GCTCGA-GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCTCTGGAGCATCGTCGGA
* * * ** **
19296199 GAACTTGATCGACGGCATTGCGGTTCCAACGATCGGGGGGC-CGGGGGGTGTGCGCACATGATGT
129 GAACCTGACCGGCGGCATTAAGGTTCCGGCGATCGGGGGGCTCGGGGGGTGTGCGCACATGATGT
*
19296263 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
19296328 CACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAATAGCCATTAATGTGTCTGACA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
19296393 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** *
19296458 GTGCATGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGAGAAAAATCCTT-CTAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
* ** *
19296522 ATTTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACTAGTCGTCT
454 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * * * *
19296587 TGCCATAAAACTACACGTGAATGCTTAAGGGACCGTTGTATGAATTTACAAGCCACAAAAATGGA
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
19296652 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCAATACACGGCTCGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
19296717 GCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGTCCGCTCATTTCATCGGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCTCATTTCATCGGTTGGCTTA
* * *
19296782 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAA
714 GGCATACGGAGTTCATTCTCAGTCTAAGATCGAACCGGACTGAGGGTTACGGCAA
19296837 ACATGCTGGG
Statistics
Matches: 2273, Mismatches: 262, Indels: 57
0.88 0.10 0.02
Matches are distributed among these distances:
894 20 0.01
895 349 0.15
896 458 0.20
897 357 0.16
898 152 0.07
899 148 0.07
900 424 0.19
901 191 0.08
902 170 0.07
903 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (899 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCTCTGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTAAGGTTCCGGCGATCGGGGGGCTCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAA
TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCTCATTTCATCGGTTGGCTTAGG
CATACGGAGTTCATTCTCAGTCTAAGATCGAACCGGACTGAGGGTTACGGCAACAGGATCGGTAG
CACGTAGAGGGGGACTCGGTCGATTCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19298578 original size:26 final size:26
Alignment explanation
Indices: 19298548--19298600 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19298538 GTTGACTTAG
19298548 GCATAC-GACGTTCATTCCCAGTCTAA
1 GCATACGGA-GTTCATTCCCAGTCTAA
*
19298574 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19298600 G
1 G
19298601 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19299483 original size:26 final size:26
Alignment explanation
Indices: 19299429--19299483 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
19299419 TGGGTTGACT
* * *
19299429 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACAGAGTTCATTCCCAGCC
*
19299455 TAAGCATACAGAGTTCGTTCCCAGCC
1 TAAGCATACAGAGTTCATTCCCAGCC
19299481 TAA
1 TAA
19299484 AATCGGATCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGCC
Found at i:19299851 original size:886 final size:881
Alignment explanation
Indices: 19296783--19300208 Score: 4266
Period size: 886 Copynumber: 3.8 Consensus size: 881
19296773 GTTGGCTTAG
* * * **
19296783 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCG--GCAAACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGTAGC--ACATGCTGG
* * ** * *
19296846 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGCACCATCGTCGGAGCATCGTCGGAGA
64 GCTCGGACATGTG-TCGTGCCACATTTTTCTTCGTCGGG-------G-C--ACCATCGTCGGAGA
* * * *
19296911 ACCTGATCGGTGGCATTAGGGTTTCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
118 ACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
19296976 CAATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAATCTCGAGAACTCAC
183 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19297041 ACCCTCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
248 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
19297106 GGGGACGCTTTTTTTAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATGTTTTTG
313 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
19297171 TGCATGCCAATAAAAATACAAGGATCACGTCTACGAAGTTAGGGGCCAAAACCCCTTCCGAAAAA
378 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
19297236 TTTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAACAGAAAACGAGTGGTCTT
443 ATTTTAAAAAATCCCGAACCATAAAAAGTTT-GAAAATCATGAAAAATAGAAAACAAGTCGTCTT
*
19297301 GCCATGAAACTTCACGTGAAGG-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCA
507 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * **
19297365 TTGGCATGCAGAAAATATGAAGATGTGCCTAAACACACAAACCACCCTATCGA---TC--C---C
572 TTGGCATGCA-CAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCTCGGCTTGC
* *
19297422 G--T--C-TC-C-CTAGCCGACATAGTGCCCGCCCGT----TCATTTCGTCAGTTGGCTTAGGCA
636 GCATCCCGTCTCTCTAGCCGACATAGTGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * * * *
19297476 TACGGACTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGTGGTAGCAGGATTGGTAGCA
701 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGGCAGGA
* * * * * * *
19297541 CATAGAA-GGGGACCCGACCGATCCTCAGCTTGCGTATCCTGCCCCTCTGGCAAGCTGAGTGCCC
766 CGTA-AAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC-CCCCCTCTGGCAGGCTGAGCGCCC
* *
19297605 GCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
829 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19297658 GCAGACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCG-TAGCACATGCTGGG
* * *
19297723 CTCCGACATGTGCTCGTGCCACAGTTTTCTTCGTCGGGCCACCATCGTCAAAGCCTCGCCGGAGA
65 CTCGGACATGTG-TCGTGCCACATTTTTCTTCGTCGGGGCACCA---TC---G--T---CGGAGA
* * * *
19297788 ACCTGATCGGATGCTTTAGGGTACCGACGACATTGGGGTTACGGCAATCGGGGGGGCCGGGGGGC
118 ACCTGA-C-----C-----GG---CG--G-CATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGG
* *
19297853 TATGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATC
166 TGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
19297918 AAATCTCGAGAACTCACAACCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCC
231 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * * * *
19297983 ATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGACACAAAACCTTGTATACTTTGATTTT
296 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
19298048 TTAGCTGAATTTTTTTGTGCACGCCGAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
361 TTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
19298112 AAAATTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTTGAAAATCATGAAAAA
425 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAA-GTTTGAAAATCATGAAAAA
*
19298177 TAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTA
489 TAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
19298242 CAAGCCATAAAAATGGCATTGGCATGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
554 CAAGCCATAAAAATGGCATTGGCATGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * *
19298307 ATCGGTCCACGGCTTGCGCATCCCGCCTCTCTAACCGGCATAGTGCTCGCCCGCTCGCCCGCTCG
619 ATCGATCCTCGGCTTGCGCATCCCGTCTCTCTAGCCGACATAGTGCCCGCCCG-T---CCGCTCG
* * * * ** *
19298372 TTTCATCGATTGGCTTAGGCATACAGAATTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTT
680 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * * *
19298437 GCGGCAGTAGGATCGACAGGACGTAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCCCCT
745 GTGGCAGTAGGATCGGCAGGACGTAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCCCCC
*
19298502 TCTGGCAGGATGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-GACGTTCATTCC
810 TCTGGCAGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA-GTTCATTCC
19298566 CAGTCTAA
874 CAGTCTAA
* * *
19298574 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGC-GTAGCACATGCTGGG
* * * ** ** *
19298639 CTCGGGCAAGTGCTAGTAACGTATTTTTCTTCGTCGGGGCACCATCGCCGGAG-ACCTGACCGGC
65 CTCGGACATGTG-TCGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGC
* * * * ** *
19298703 GGTATTGGGGTTTCGAGGATCGGGGGGGCTGGGGGGGTGTACGCACATGATGTGCGCTAGGTGCT
129 GGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCT
* * * *
19298768 CGTACTTGGCCCGTATTTTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
19298833 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
19298898 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
324 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * ** * *
19298963 AAAAAGACAAGGATCACGTCTACCATGTTTGATGCCAAAAATCCTTCTGAAAAAATTTTAAAAAA
389 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
**
19299028 TCTGGAACCATAAAAAGTTTGAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACT
454 TCCCGAACCATAAAAAGTTTG-AAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACT
* * *
19299093 TCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATTGGCATGCAT
518 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAC
*
19299158 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCTCGGCTTGCGCATCCTGTCTC
583 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCTCGGCTTGCGCATCCCGTCTC
* * * *
19299223 TCTGGCCGACGTAGTGCCCGCCCGTCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTTAT
648 TCTAGCCGACATAGTGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
** * *
19299288 TCTTAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAAGATCGGCAGGACGCAAAGGGGGA
713 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGGCAGGACGTAAAGGGGGA
* ** * * * *
19299353 CTCGGTCGATCCCCGGCTTTCACATCCCACCCCTCTGGTC-GGCTGAGCGCCCGCATGCTTGTTT
778 CCCGACCGATCCCCGGCTTGCGCATCCC-CCCCTCTGG-CAGGCTGAGCGCCCGCACGCTCGTTT
* *
19299417 CATGGGTTGACTTAAGCATACGGAGTTCATTCCTAGTCTAA
841 CATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
19299458 GCATACAGAGTTCGTTCCCAGCCTAAAATCGGATCAGACCAAGGGTTGCAGTGGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGC-GTAGCACATGCTGGG
* *
19299523 ATCGGCCATGTGTCGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGC
65 CTCGGACATGTGTC-GTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGC
* * *
19299588 GGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
129 GGCATTGGGGTTTCGACGATCGGGGGGG-CCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGC
* *
19299653 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACGCCCCCTTAA
193 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
19299718 AAAGCATTTGAGATTTTACAGGTTTTCTGCCTGTAG-CAGTTAAAGTGTTTGAAATGGGGACACT
258 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TTAAAGTGTCTGAAATGGGGACACT
*
19299782 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTGCCA
322 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * *
19299847 ACAAAAATATAAGGATCACCTCTACCAGGGTTCGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
387 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * ** * * *
19299912 AATCTCTAAACGCAAAATGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
452 AATCCCGAACCATAAAAAG-TTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAA
19299977 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
516 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * *
19300042 ACAAATATGAAGATGTGCCAAAACCCACCTACGACCCTATCGATCCAT-TGCTTGCGCATCCCGT
581 ACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-TCGGCTTGCGCATCCCGT
* *
19300106 CTCTCTAGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
645 CTCTCTAGCCGACATAGTGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * *
19300171 CATTCTCAGT-TAAGATCGGACCAGACCAAGGGTTGTGG
710 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGG
19300209 TAGCACATGC
Statistics
Matches: 2212, Mismatches: 268, Indels: 132
0.85 0.10 0.05
Matches are distributed among these distances:
866 3 0.00
868 1 0.00
869 2 0.00
872 1 0.00
874 1 0.00
875 45 0.02
876 41 0.02
877 12 0.01
878 2 0.00
883 113 0.05
884 161 0.07
885 67 0.03
886 512 0.23
887 488 0.22
888 3 0.00
890 2 0.00
891 1 0.00
893 3 0.00
894 391 0.18
895 56 0.03
897 1 0.00
898 1 0.00
899 1 0.00
902 2 0.00
903 1 0.00
904 7 0.00
905 5 0.00
906 1 0.00
907 1 0.00
908 1 0.00
909 20 0.01
910 2 0.00
913 2 0.00
915 2 0.00
916 158 0.07
917 102 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (881 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGTAGCACATGCTGGGC
TCGGACATGTGTCGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGCGG
CATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
CCGAACCATAAAAAGTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCACAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCTCGGCTTGCGCATCCCGTCTCTCT
AGCCGACATAGTGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGGCAGGACGTAAAGGGGGACCC
GACCGATCCCCGGCTTGCGCATCCCCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTCATGG
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19301069 original size:26 final size:27
Alignment explanation
Indices: 19301026--19301076 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
19301016 CGTGGGTTGA
19301026 CTTAGGCATACAGGGTTCACTCCCAAT
1 CTTAGGCATACAGGGTTCACTCCCAAT
*
19301053 CTTA-GCATAC-GGAGTTCAGTCCCA
1 CTTAGGCATACAGG-GTTCACTCCCA
19301077 GTCTAAGATC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 2 0.09
26 16 0.73
27 4 0.18
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (27 bp):
CTTAGGCATACAGGGTTCACTCCCAAT
Found at i:19302654 original size:12 final size:12
Alignment explanation
Indices: 19302637--19302662 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
19302627 GCGTAGTGCC
19302637 CGCCCGCCCGCT
1 CGCCCGCCCGCT
19302649 CGCCCGCCCGCT
1 CGCCCGCCCGCT
19302661 CG
1 CG
19302663 TTTCATCGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.65, G:0.27, T:0.08
Consensus pattern (12 bp):
CGCCCGCCCGCT
Found at i:19302885 original size:29 final size:28
Alignment explanation
Indices: 19302843--19302897 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
19302833 GTTCACTTAG
*
19302843 GCATAACGGAGTTCATATCCCAATCTAGA
1 GCATAACAGAGTTCAT-TCCCAATCTAGA
*
19302872 GCATAACAGAGTTCATTCCCAGTCTA
1 GCATAACAGAGTTCATTCCCAATCTA
19302898 AAGATCAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 9 0.38
29 15 0.62
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (28 bp):
GCATAACAGAGTTCATTCCCAATCTAGA
Found at i:19303798 original size:26 final size:26
Alignment explanation
Indices: 19303762--19303814 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19303752 GTTGACATAG
*
19303762 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19303788 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19303814 G
1 G
19303815 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19304060 original size:904 final size:897
Alignment explanation
Indices: 19300159--19308078 Score: 9287
Period size: 904 Copynumber: 8.9 Consensus size: 897
19300149 GTTGGCTTAG
* * * * * *
19300159 GCATACGGAGTTCATTCTCAGT-TAAGATCGGACCAGACCAAGGGTTGTGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-ACCGAGGGTTGCGGCAGCACATGCTGGG
* * *** *
19300223 CTTGGGCATGTGCTGGTGCCACATTTTTCTTTAACGGGGCACCATCGCCGGAGCATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * ** * *
19300288 ACTTGACTGGCAACATTGGGGTTCCGACAATCGGAGGGGCC-GGGGGGTATGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
19300352 CGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19300417 ACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19300482 GGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** *
19300547 TGCATGCCAAAAAAAATACAAGGATCATGTCTTTCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAA
* * * * *
19300612 TTTTTAAAAAATCCCGAACCGTAAAAGGTTTCCAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * * **
19300677 CCCATCAAACTTCACGTGAAAGCTGAAGGGATGATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
19300742 TTGGCATGCACAAATATGAACG-TGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGT
584 TTGGCACGCACAAATATGAA-GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** *
19300806 GCATCCCGTCTCTCTGGCCGACGTAGTGCTTGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
19300871 GGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACAGTAGTAGGATCGAC
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGC
** * * * * *
19300936 AGTACACAGAGGGGGACCCGA-TCAATCCCCGGCTTCCGCATTTCGCCCCTCTGGTCGGCTGAGC
778 AACACGCAGAGGGGGACCCGACT-GATCCCCGGCTTGCGCA-TCCGCCCCTCTGGCCGGCTGAGC
* * * * * *
19301000 GTCGGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGG-GTTCACTCCCAATCTTA
841 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GGAGTTCATTCCCAGTCTAA
* * * * *
19301057 GCATACGGAGTTCAGTCCCAGTCTAAGATCATATCAGACCGAGGGTTGCGGTAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-ACCGAGGGTTGCGGCAGCACATGCTGGG
** * *
19301122 CTCAAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
** * * * * *
19301187 ACCTGACCCACGGCATTAGGGTT-CTAGCGATCAAGAGGGTCGGGGGGGTGTGCGCACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
19301251 GAGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19301316 -ACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAT
258 CA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
19301380 ATGGGGACATTTTTTTCAAATGGCCACAAAATCTTGTACACTTTGAGTTTTTATCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
19301445 TATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTCAT-GGCAAAAACTCCATCCGAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT-TTGGGCCAAAACTCCTTCCGAA
* * * * *
19301509 AAATTTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGACGG
451 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
19301574 CTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCACTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
19301639 GCATTGGCATGCAAAAATATAAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
581 GCATTGGCACGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
19301704 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCATTTCGTCGGTT
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG--C--CCGCTCGTTTCGTCGGTT
** * * * ** *
19301769 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACTGAGGGTTGCAATAGAAGG
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGG
* * * * * * * *
19301834 ATCTGTAGCACGCAGAAGGGAACCCGA-TCGATCCCCGGCTTGCGCATGCCGTCCCTCTGACTGG
772 ATCGGCAACACGCAGAGGGGGACCCGACT-GATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGG
* **
19301898 CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACATAGTTCATTCCCAGTCTAA
835 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
19301961 GCTTACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTTG-GGGCTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CAAC-CGAGGGTTGCGGCAGCACATGCTGG
* * * * *
19302025 GCTCGGGCTTGTGCTGGTGCCACATTTTTCTTCG-CAGAGGCACCATCACCGGAGCATCGTCGGA
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCCGGA
* ** *
19302089 GAACCTTACCGATGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGGTGTGTGCACATGATG
128 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGGTGTGCGCACATGATG
* * *
19302154 TGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATTAAACC-CTGAGAACT
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-GAGAACT
* * * *
19302218 CACA-CCCCTTAAAGAGTAGTTGAGATTTTACAGGTTTGCTTCCAGTAGCTATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
19302282 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTGTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
19302347 TTGTGCATG-CAACAAAAATACAATGATCATGTCTACCAAG-TTGGGGCCAAAAAT-CTTCAG-A
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAA
* *
19302408 AAAATTTTAAAAAAAT-TCTG-ACCATAAAAAGTTTTCAAAAATCATGAAAAATAGAAAACCG-G
451 AAAATTTT-AAAAAATCTC-GAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAA-CGAG
19302470 TCGTCTTGCCATGAAACTTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
512 TCGTCTTGCCATGAAACTT-CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
19302535 AAATGGCATTGGCATGCACAAATATGAAGATGTTCCTAAACCCACCTACCACCTTATCGATCCAC
576 AAATGGCATTGGCACGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * *
19302600 GACTTGCACATACCATCTCTCTCGTCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCCCGCTCGTT
641 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCG--C-C-CGCCCGCCCGCTCGTT
* * * * * * *
19302665 TCATCGATTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTAC
698 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAC
* * * * * *
19302730 GGTAGCAGGATCGGTAGA-ACGTAGAGGGGGGACCCAGTTCCGATTCCCCGACTTGAGCATCCTG
763 GGTAGCAGGATCGGCA-ACACGCAGA-GGGGGACCC-G-ACTGA-TCCCCGGCTTGCGCATCC-G
* * * * *
19302794 -CGCTCTGGCCCGCTGAGCGGCC-CACGGTCGTTTTCGTGGGTTCACTTAGGCATAACGGAGTTC
822 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG-TTTCGTGGGTTGACTTAGGCAT-ACGGAGTTC
*
19302857 ATATCCCAATCTAGA
885 AT-TCCCAGTCTA-A
* ** *
19302872 GCATAACAGAGTTCATTCCCAGTCTAAAGATCAGATCGGACCGAGGGTTGGCGGGCAAGAACATG
1 GCAT-ACGGAGTTCATTCCCAGTCT-AAGATCAGA-CCAACCGAGGGTT-GC-GGC-AGCACATG
* * * *
19302937 CTGGGCTCGGGCATCGTGCTGGTGTCGCATTTTTCTTCCGTTGGGGGCACCATCAGCTGGAAGCC
60 CTGGGCTCGGGCAT-GTGCTGGTGCCGCATTTTTCTT-CG-TCGGGGCACCATC-GCCGG-AGCA
* * * * *
19303002 TCACAGGGGTAACCTGACCGGCGGCAATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGT
120 TCGCCGGAG-AACCTGACCGGCGGC-ATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGC
*
19303067 GCACATTGA-GTGCCATGGG-GCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAAC
182 GCACA-TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
** * * *
19303129 GACAAGAACTCACACCCTCTTAAAGAGCAATTTGGAGATTTTACAGGTTTGGCTGCCAAGTAGCA
246 CTCGAGAACTCACACCCCCTTAAAGAGC-ATTT-GAGATTTTACAGGTTT-GCTGCC-AGTAGCC
* * * *
19303194 ATTAATGTGTCTGACATGGGGACACTTTTTTCAAAATGGTC-CACAAATCTTGTACTCTTCGAGG
307 ATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCACA-AAATCTTGTACACTTCGAGT
* ** * *
19303258 TTTTAGCTGAAATTTTTTTGCGCACACCAACAAAAATACAAAGATCACGTCAACCAAGTTTTGGG
370 TTTTAGCTG-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGG
* * *
19303323 CCAAAACTCCTTTCGAAAAACTTTT-AAAATTCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
434 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
* * *
19303387 AATAAAAAAAACGAGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAA
499 AAT--AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
19303452 TTTACAAGCCATAAAAATGGCATTGGCACGCACAAATATGCAGATGTGCCTAAACCCACCTCCCA
562 TTTACAAGCCATAAAAATGGCATTGGCACGCACAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
19303517 CCCTATCGATCCACGGCTTGTGCATACCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
627 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
* * *
19303582 CTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT-ATTCCCAGTCTAAGATCGGACCAGATCGAG
692 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* *
19303646 GGTTACGATAGCAGGATCGGCAACACGTAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCTC
757 GGTTACGGTAGCAGGATCGGCAACACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATC-C
* * * *
19303711 GGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTCCGTGGGTTGACATAGGCATACGGAGTTCA
821 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
*
19303776 TTCCTAGTCTAA
886 TTCCCAGTCTAA
* * *
19303788 GCATATGGAGTTCTTTCCCAGTCTAAGATCAGACCGAACCGAGGGATGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
19303853 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAAGGCACCATCGCCGAAGCATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * * * *
19303918 ACCTAACCGGCGACATTTGGGTTCCGGCTATCGGGGGGCCGGGGGGGTGTGCGCACGT-ATGTAC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
** * * *
19303982 GATGGGCACTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTTGAGAACTCACG
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19304047 CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19304112 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGG
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
19304177 GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAG-TTTGGCACCAACACTCCTTTCGAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGG-GCCAAAACTCCTTCCGAAAAA
* * * * *
19304241 ATTTTAAAACATCCCGAACCGTAAAAAGTTTGAAAAATTGTGAAAAATAAAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
19304306 GCCATGAAACTTCACATGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
19304370 TTGACACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
19304435 TATCCCGTCTCTCTGGCCGACTTAGTGCCCACCCATCCGCCTGCCCGTCCGCTCGTTTTGTCAGT
649 CATCCCGTCTCTCTGGCCGACGTAGTG------C--CCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* *
19304500 AGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAG
706 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAG
* * * * * * *
19304564 GATCGGCCACACGCAGAAGGGGACCCGGCCGATCCTCGGCTTGCTCATCCCGCCCCTCTGGCCGA
771 GATCGGCAACACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGG
* *
19304629 CTGAGCGCCCACACGGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19304692 -AAT-C-G-G---A---CC-G-----GAT---------CGAGGGTTGTGACAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * * * **
19304732 TCGGGCATGTGTTGGTACCGTATTTTTCTTTGTCGGGGTACCATCACCGGGGCATCATCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
* * *
19304797 CCTGACAGGAGGCATTGAGGTGT-CGACGATCGAGGGGGCCGGGTGGGGTGTGGCGCACATGAT-
131 CCTGACCGGCGGCATTGGGGT-TCCGACGATCG-GGGGGCCGGG-GGGGTGT-GCGCACATGATG
* *
19304860 TGCGATGGGTGCTAGTACTTGGCCCCTTATATTGGCCCCCTATCCCTCATGAAA-CTCGAGAACT
192 TGCGATGGGTGCTGGTACTTGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
19304924 CA-ACCCCCTTAAAGAGCTTTTGAGA-TTTACAGGTTTGCTG-CAGTAG-CATTAAAGTGTTTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
19304985 AATGGGGA-ACTTTTTT-AAATGGTTACAAAATCTTGTAACTCTTCGAGGTTTTAGCTGAATTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT-ACACTTCGAGTTTTTAGCTGAATTTT
* * * *
19305048 TTTGTGCACGACAAC-AAAATACAA-GATAACGTCTACCCAAGTTTTGGGCCAAAACTCCTTTCG
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CCAAGTTTTGGGCCAAAACTCCTTCCG
* * *
19305111 -AAAAACTTTAAAAAATCCCG-A-CGT-AAAAGTTTCAAAAAATCATGAAAAATAGAAAACGAGT
449 AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTC-AAAAATCGTGAAAAATAGAAAACGAGT
*
19305172 CGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
513 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
19305237 ATGGCATT-GCACACACAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGG
578 ATGGCATTGGCACGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
19305301 CTTGTGCATACCGTCTCTCTGG-C--CG-A-----CGCCCGCCCACCCGTTCATTTCGTCGGTTG
643 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
** * *
19305357 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATGGAGGGTTGCGGTAGTAGGA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGA
* ** * * * * *
19305422 TTGGTGACACGTAGAGGGGGACCCGACTGATCCCTGGATTGTGCATCCTGCCCCTTTGGCCGGCT
773 TCGGCAACACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCT
* * * * * *
19305487 GAGCGCCCGCACGCTCGTTCCGTGGATTGACTTAAGCATGCAGAGTTCATTCCTAGTCTAA
837 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * * *
19305548 GCATATGGAGTTC-TTTCCTGTCTAAGATCAGACTGGACCGAGGGATGTGGCAGCACAAGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CAACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19305612 CTTGGGCATGTGCTGGAGCTGCATTTTTCTTCGTCGGGGCACCAT--------TAT---CAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * *
19305666 ACCTAACCGACGGCATTGGGGTTCCGGCTATCGGGGGGCCGGGGGGGTGTGCGCACAT-ATGTAC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * * *
19305730 GATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACG
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
19305795 CCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAACTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19305860 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTCGCTGAAATTTTTTT-
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTG
* * * * * *
19305924 AGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCATTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAA
* * * *
19305989 ATTTTAAAAAATATCGAACTGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * * *
19306054 GCCATTAAATTTCATGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * *
19306119 TTGGCACGTAAAAATATGAAGATGTGCCTAAAGCCACCTCCCACCCTATCGATCCACAGCTTGTG
584 TTGGCACGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * * * *
19306184 CATCCCGCCTCTCTAACCTACGTAGT----GCCCACCCGCCCGCTCATTTCGTCGGTTGGCTTAA
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
19306245 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACTGAGGGTTACGGTAGCAAGATCAGCA
714 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCA
* * * * * * *
19306310 GCATGCAGA-AGGGA-CCGACTGATCCCCGACTTACGCATCCCACCCCTCTGGCCGACTGAGCGC
779 ACACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGC
* * *
19306373 CTGCACTCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
843 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
19306428 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGACAGCACATGTTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-ACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
19306493 CT-GGGCATGTGCTGGTGCCACATTTATCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
19306557 ACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* *
19306621 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCACCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19306685 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19306750 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGA
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
19306815 GCATGCCAACAAAAATACAAGGATTATGTCTACCAAGTTTGGGGCCAAAACTCATTCCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAAA
* *
19306880 TTTTAAAAAATATCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTG
455 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
19306945 CCATGAAATTTCACGTGAAGGGTTAAGGGACCATTGTACGAATTTACAAG-CATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
19307009 TGGCACGTAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCAC
585 TGGCACGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
19307074 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCAGGCCGCTCGCTCGTTTCGTCTGTTGGCT
650 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-C---CCGCCCGCTCGTTTCGTCGGTTGGCT
* ** ** * ** * *
19307139 TAGGTATACGGAGTTCATTCCCAGTCTAAGATTGGATTAGACCAAGGGTTGTGGTAGTAGGATCA
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCG
* * * * * *
19307204 GTAGCACGCAGAGGGGGACCCGA-TCGATCCCTGGCTTGCGTATCCCACCCCTCTGGCCGACTGA
776 GCAACACGCAGAGGGGGACCCGACT-GATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGA
* * *
19307268 GCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
839 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
19307327 GGATACAAAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-ACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
19307392 CTCGGGCATGTGCTGGTGCTGCATTTTCCATT-GCCGGGGCACCAT--------CA---CCGGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* ** * *
19307445 AACCTAATTGGCGGCATTGGGGTTTCGACGATCGGGGGGGCC-GGGGGGTGTGTGCACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
19307509 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
19307574 CACCGCCTGAAAGAGCATTTGAGATTTTATAGGTTTGTTTCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
19307639 TGGGGACACTTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 TGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * ** *
19307704 TGTGCAAGCCAAAAAAAATAGAAGGATCACGTCTGCTGAG-TTTGGGTCCAAAACTCCTTCCAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGG-CCAAAACTCCTTCCGAA
* ** ** * *
19307768 AAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCGTAAATTGTGAAAAATAGAAAACGAGTCTT
451 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
19307833 TTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
19307898 GCATTGGCAAGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCACGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
19307963 GCGCATCCTGTCTCTCTGGCTG--GT-GT---AG--TGCCCGCCCGCTCGTTTCGTCGGTTGGCT
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * ***
19308020 TAGGCATATGGAGTTCATTCCCAATGTAAGATCATATTGGACCGAGGGTTACGGTAGCA
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCA
19308079 CATGTTGGGC
Statistics
Matches: 6049, Mismatches: 776, Indels: 411
0.84 0.11 0.06
Matches are distributed among these distances:
855 46 0.01
856 138 0.02
857 2 0.00
859 1 0.00
860 1 0.00
865 2 0.00
866 32 0.01
867 38 0.01
868 28 0.00
869 26 0.00
870 35 0.01
871 33 0.01
872 188 0.03
873 73 0.01
874 54 0.01
875 48 0.01
876 142 0.02
877 98 0.02
878 105 0.02
879 25 0.00
880 164 0.03
881 216 0.04
882 122 0.02
884 1 0.00
885 1 0.00
887 1 0.00
888 5 0.00
889 133 0.02
890 391 0.06
891 199 0.03
892 191 0.03
893 96 0.02
894 3 0.00
896 91 0.02
897 161 0.03
898 91 0.02
899 359 0.06
900 591 0.10
901 149 0.02
902 55 0.01
903 182 0.03
904 632 0.10
905 105 0.02
906 16 0.00
907 13 0.00
908 52 0.01
909 32 0.01
910 30 0.00
911 24 0.00
912 23 0.00
913 19 0.00
914 21 0.00
915 20 0.00
916 25 0.00
917 28 0.00
918 29 0.00
919 52 0.01
920 10 0.00
921 45 0.01
922 101 0.02
923 84 0.01
924 29 0.00
925 6 0.00
926 38 0.01
927 39 0.01
928 12 0.00
929 28 0.00
930 37 0.01
931 150 0.02
932 32 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAAC
ACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19305548 original size:26 final size:25
Alignment explanation
Indices: 19305519--19305573 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 25
19305509 TGGATTGACT
*
19305519 TAAGCATGCAGAGTTCATTCCTAGTC
1 TAAGCATACAGAGTTCATTCCT-GTC
** *
19305545 TAAGCATATGGAGTTCTTTCCTGTC
1 TAAGCATACAGAGTTCATTCCTGTC
19305570 TAAG
1 TAAG
19305574 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (25 bp):
TAAGCATACAGAGTTCATTCCTGTC
Found at i:19306439 original size:26 final size:26
Alignment explanation
Indices: 19306402--19306454 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19306392 GTTGACTTAG
19306402 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19306428 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
19306454 G
1 G
19306455 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19308671 original size:702 final size:709
Alignment explanation
Indices: 19307434--19308788 Score: 2086
Period size: 702 Copynumber: 1.9 Consensus size: 709
19307424 GCCGGGGCAC
* * * * * *
19307434 CATCACCGGAGAACCTAATTGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGTG
1 CATCACCGGAGAACCTAATCGGCGACATTAGGGTTCCGACGATCGGGGGGGCCGAGGGGTGTGCG
* *
19307499 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCT
66 CACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCTCCCTAGCCCTCATCAAACCT
***
19307564 CAAGAACTCACACCGCCTGAAAGAGCATTTGAGATTTTATAGGTTTGTTTCCAGTAGCCATTAAA
131 CAAGAACTCACACCGCCTGAAAGAGCATTTGAGATTTTATAGGTTTGCAGCCAGTAGCCATTAAA
19307629 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGAGTTTTTAGC
196 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGC
* * * **
19307694 TGAATTTTTTTGTGCAAGCCAAAAAAAATAGAAGGATCACGTCTGCTGAGTTTGGGTCCAAAACT
260 TGAATTGTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAACT
** **
19307759 CCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCGTAAATTGTGAAAAATAGAAA
325 CCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* * * *
19307824 ACGAGTCTTTTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCC
390 ACGAGTCGTCTTACCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
19307889 ATAAAAATGGCATTGGCAAGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
455 ATAAAAATGGCATTGGCAAGTAGAAATAAGAAGATGTGCCAAAACCCACCTACCACCCTATCGAT
* *
19307954 CCACGGCTTGCGCATCCTGTCTCTCTGG-CTGGTGTAGT-G-C-CCGCCCGCTCGTTTCGTCGGT
520 CCACGGCTTGCGCATCCTGTCTCTCTGGTC-GGCGTAGTCGCCGCCGCCCGCTCGTTTCATCGGT
* * * *
19308015 TGGCTTAGGCA-TATGGAGTTCATTCCCAATGTAAGATCATATTGGACCGAGGGTTACGGTAGCA
584 TGGCTTAGGCATTA-GGAGTTCATTCCCAATCTAAGATCAAACTAGACCGAGGGTTACGGTAGCA
19308079 CATGTTGGGCTCGGGCATGTCCTGGTGCGGCATTTTTCTTTGCTGGGGTGCCATCGACGAAG
648 CATGTTGGGCTCGGGCATGTCCTGGTGCGGCATTTTTCTTTGCTGGGGTGCCATCGACGAAG
* *
19308141 CATCACTGGAGAACCTGATCGGCGACATTAGGGTTCCGACGAT-GGGGGGGCCCGAGGGGTGTGC
1 CATCACCGGAGAACCTAATCGGCGACATTAGGGTTCCGACGATCGGGGGGG-CCGAGGGGTGTGC
*
19308205 GGACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGC-CCCTAGCCCTCATCAAACC
65 GCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCTCCCTAGCCCTCATCAAACC
* *
19308269 TCAAGAACTCAGACC-CCTTAAAGAGCATTTGAGATTTTACT-GGTTTGCAGCCAGTAGCCATTA
130 TCAAGAACTCACACCGCCTGAAAGAGCATTTGAGATTTTA-TAGGTTTGCAGCCAGTAGCCATTA
19308332 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAATCTTGTACACTTCGAGTTTTTAG
194 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
19308396 CTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-GCAAAAC
259 CTGAATTGTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAAC
* * * **
19308460 TCGTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
324 TCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAA
* *
19308525 AAGGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGC
389 AACGAGTCGTCTTACCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGC
*
19308590 CATAAAAATGGCATTGGCACA-TAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCG
454 CATAAAAATGGCATTGGCA-AGTAGAAATAAGAAGATGTGCCAAAACCCACCTACCACCCTATCG
19308654 ATCCACGGCTTGCGCATCCTGTCTCTCTGGTCGGCGTAGTGCCCGCCCGTCCGCCCGCTCGTTTC
518 ATCCACGGCTTGCGCATCCTGTCTCTCTGGTCGGCGTAGT---CG-CCG-CCGCCCGCTCGTTTC
* *
19308719 ATCGGTTGGCTTAGGCATTAGGAGTTCATTCCCAGTCTAAGATCAAACTAGACCGAGGTTTACGG
578 ATCGGTTGGCTTAGGCATTAGGAGTTCATTCCCAATCTAAGATCAAACTAGACCGAGGGTTACGG
19308784 TAGCA
643 TAGCA
19308789 GGATCAGCAG
Statistics
Matches: 586, Mismatches: 49, Indels: 23
0.89 0.07 0.03
Matches are distributed among these distances:
702 218 0.37
703 78 0.13
705 80 0.14
706 41 0.07
707 91 0.16
708 1 0.00
710 75 0.13
711 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (709 bp):
CATCACCGGAGAACCTAATCGGCGACATTAGGGTTCCGACGATCGGGGGGGCCGAGGGGTGTGCG
CACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCTCCCTAGCCCTCATCAAACCT
CAAGAACTCACACCGCCTGAAAGAGCATTTGAGATTTTATAGGTTTGCAGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTGTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAACTC
CTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
CGAGTCGTCTTACCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCAAGTAGAAATAAGAAGATGTGCCAAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCTGTCTCTCTGGTCGGCGTAGTCGCCGCCGCCCGCTCGTTTCATCGGTTG
GCTTAGGCATTAGGAGTTCATTCCCAATCTAAGATCAAACTAGACCGAGGGTTACGGTAGCACAT
GTTGGGCTCGGGCATGTCCTGGTGCGGCATTTTTCTTTGCTGGGGTGCCATCGACGAAG
Found at i:19310575 original size:26 final size:26
Alignment explanation
Indices: 19310545--19310597 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19310535 GTTGACTTAG
19310545 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19310571 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19310597 G
1 G
19310598 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19311471 original size:26 final size:26
Alignment explanation
Indices: 19311441--19311490 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
19311431 GACTTAGGCA
19311441 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
19311467 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
19311491 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:19312365 original size:26 final size:26
Alignment explanation
Indices: 19312329--19312381 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19312319 GTTGACTTAG
*
19312329 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19312355 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19312381 G
1 G
19312382 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19312873 original size:888 final size:890
Alignment explanation
Indices: 19310449--19314003 Score: 4651
Period size: 888 Copynumber: 4.0 Consensus size: 890
19310439 AGGGTTGCGG
* * * ** * *
19310449 CAGCATGCAGAAGGGGACCCGATCGATCCCCAACTTGCGCATCCTACCCCGCTGGCCGACTGAGC
1 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGG-CGACTGAGC
* * * *
19310514 ACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGG
65 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
* * * * *
19310579 AGTTCATTCCCAGTCTAAGATCAGACCGAAC-CATGGGTTACGACCA-CACATGTTGGGATTGGG
130 AGTTCATTCCCAGTCTAAGATCAGACCGAACGGA-GGGTTGCGA-CAGCACATGCTGGGCTCGGG
** ** *
19310642 CATGT-CTTGGTGCCGCATTTTTCTTCTTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTG
193 CATGTGC-TGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTG
* ** * * *
19310706 ACCGGCGGCATTGTGGTTTTGGCGATGA-GGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGG
257 ACCGGCGGCATTGGGGTTCCGGCGATCAGGGGGGCCGAGGGGTGTGCGCACATGATGTGCGATGG
* *
19310770 CTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCC
322 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
19310834 TTAAAGACCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
387 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
*
19310899 ACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
452 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
19310964 CCAACAAAAATACAATGATCACGTCTACC--------GGCCAAAAATCCTTTCGGAAAAATTTTA
517 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* *
19311021 AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATG
582 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
19311086 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGTA
647 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
19311151 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCTACGGCTTGCGCATCCT
712 CGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
* *
19311216 GTCTCTCTGGCCGACAAAGTGCCTGTCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGTTTAGGC
777 GTCTCTCTGGCCGAC--A-T---AGT--G--C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * ** ** * *
19311281 ATACAGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGTTTACGGCAACAAGAT-TA
830 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGTAGGATCGA
* * * * * *
19311341 GCAGTACGCAGAGGGGGTCCAGGCCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCAGCTGAG
1 -CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCGA-CTGAG
* * * *
19311406 CGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACG
64 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
* * * *
19311471 GAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGTGACCGTACATGCTGGGCTCGGGC
129 GAGTTCATTCCCAGTCTAAGATCAGACCGAACGGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
* *
19311536 ATGTGCTGGTGCCGCATTTTTCTTCACAGGGGCACCATCACCGGAGCATCGCCGGAGAACTTGAC
194 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGAC
* * * * *
19311601 CGGCGGCAATAGGGTTCTGGTGATC-GGGGGAGCCGAGGGAGTGTGCGCACATGATTTGCGATGG
259 CGGCGGCATTGGGGTTCCGGCGATCAGGGGG-GCCGAGGG-GTGTGCGCACATGATGTGCGATGG
* * * * * *
19311665 GTACTAGTACTTAGTCCTTATATTGGGCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCC
322 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
19311730 TTAAAGAGCATTTGAGATTTTACATGTTTGCTACCAGTAGTCATTAAAGTGTCTAAAATGGGGAC
387 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
*
19311795 ACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
452 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
19311860 CCAACAAAAATACAAGGATCATGTCTACCATGTTTGTGGCCAAAACTCCTTCCGAAAAAATTTTA
517 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * *
19311925 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAGAGAAAACGAGTCGTCTTGCCAAG
582 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
19311990 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATCTACAAGCCATAAAAATGGCATTGGCA
647 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
19312055 CACAAAAAGATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCG
712 CGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
* *
19312120 GTCTCTCTGGCTGACATAGTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
777 GTCTCTCTGGCCGACATAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* *
19312185 TTCCCAGTCTAAGATTGGATCAGACTGAGGGTTGTGGTAGTAGGATCGA
842 TTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGTAGGATCGA
* * * *
19312234 CAGCACGCAGAGGGGGACTCGACCGATCCCCGGCTTACGCATCCTGCCCCCCTGGTCGATTGAGC
1 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGG-CGACTGAGC
** * *
19312299 GCCCGCACATTTGTTT-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
65 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
* * * *
19312363 AGTTCATTTCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGACAGCACATGTTGGGCTCAGGC
130 AGTTCATTCCCAGTCTAAGATCAGACC-GAACGGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
* * ** ** * * * * *
19312427 ATGTGCTGGTGTCGTATTTTTCTTCACCGGGGTGCCATTGCCGTAGCATTGTCAGAGAACTTGAC
194 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGAC
* * *
19312492 CGGCAGCATTGGGGTTCCGGCGATCAGGGGGGCCGAGCGG-GTGCGCACATGATGTGTGATGGGT
259 CGGCGGCATTGGGGTTCCGGCGATCAGGGGGGCCGAGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
19312556 TCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAACCCTCGAGAACTCACACCCCCTT
324 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
19312621 AAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAATTGGGGACAC
389 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
* *
19312686 TTTTTTCAAATGGTCACAAAAT-TTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCC
454 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
19312750 AAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCCTCCGAAAAAATTTTTAA
519 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
19312815 AAATCCCGAACCG-ATAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
584 AAATCCCGAACCGCA-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * * * *
19312879 AACTTCACGTAAAGGCTTAAGGGGCCATTGGATGAATTTACAAGCCATAAAAATGGTATTGACAT
648 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
19312944 GCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
713 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTG
* * *
19313009 TCTCTCTGGCCGGCATAGTGCCCGCCCGCTCGTTTTGTCGGTTGGCTT-GTGCATACGAAGTTCA
778 TCTCTCTGGCCGACATAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG-GCATACGGAGTTCA
* *
19313073 TTCCCAATCTAAGATTGGACCAGACCT-AGGGTTGTGGCAGTAGGATCGG
842 TTCCCAGTCTAAGATTGGACCAGA-CTGAGGGTTGTGGCAGTAGGATCGA
* * * * * * * ** * *
19313122 TAGCACGAAAAGGGGGACCCAATCGATTCACGGCTTGTACATCCCGCCCCTCTGGCTGGCTGAGC
1 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGC-GACTGAGC
* *
19313187 GCCCGCGCGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATACAG
65 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
* *
19313251 AGTTCATTCCTAGTCTAAGATCGGACCGAACGGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
130 AGTTCATTCCCAGTCTAAGATCAGACCGAACGGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* * * * * *
19313316 TGTGCTGGT-AC-CATTTTTTCTTCATCGGGGCACCATAATCGAAGCATCGCCGGAGAACCTGAT
195 TGTGCTGGTGCCGCA-TTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGAC
* * * * * *
19313379 CGGTGGCATTGGGGTTACGGTGAGCGGGGGGGCCGGAGGGGGTGTGCACACATGATGTGCGATGG
259 CGGCGGCATTGGGGTTCCGGCGATCAGGGGGGCC-GA-GGGGTGTGCGCACATGATGTGCGATGG
* *
19313444 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTTACACCCCC
322 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
19313509 TTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATGGGGAC
387 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
* * *
19313574 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTGTTAGCTGATTTTTTTTGTGCATG
452 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
19313639 CCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACACCTTCCG-AAAAATTTTA
517 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * **
19313703 AAAAATCCCAAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATAAGTCGTCTTGCCATG
582 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
19313768 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
647 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* ** * ** *
19313833 TGCAAAAATACAAAGATGTACCTAAATTCACCTACTACCCTATCGATCCACGGCTTGCGCATCCT
712 CGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
* * * * * * *
19313898 GTCTCTTTGGTCGGCATAGTGCCCGCCCGCCCGCCCGTTCGTTTTGTCAGTTGGCTTATGCATAT
777 GTCTCTCTGGCCGACATAGT----GCCCGCCCG--C--TCGTTTCGTCGGTTGGCTTAGGCATAC
* * * *
19313963 GGAGTTCATTCCCAGTCTAACATCGGACCGGACAGAGGGTT
834 GGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTT
19314004 ACAGCAGCAC
Statistics
Matches: 2331, Mismatches: 289, Indels: 79
0.86 0.11 0.03
Matches are distributed among these distances:
886 1 0.00
887 72 0.03
888 515 0.22
889 191 0.08
890 366 0.16
891 264 0.11
892 149 0.06
893 242 0.10
894 19 0.01
895 76 0.03
896 156 0.07
897 1 0.00
898 58 0.02
901 1 0.00
902 1 0.00
904 219 0.09
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCGACTGAGCG
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGA
GTTCATTCCCAGTCTAAGATCAGACCGAACGGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCG
GCGGCATTGGGGTTCCGGCGATCAGGGGGGCCGAGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCT
CTCTGGCCGACATAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGTAGGATCGA
Found at i:19313247 original size:25 final size:26
Alignment explanation
Indices: 19313218--19313269 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
19313208 GTTGACTTAG
*
19313218 GCATACGGAGTTCATTCC-AGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
19313243 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
19313269 G
1 G
19313270 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:19314718 original size:715 final size:713
Alignment explanation
Indices: 19313243--19314725 Score: 2159
Period size: 715 Copynumber: 2.1 Consensus size: 713
19313233 TCCAGTCTAA
* * * *
19313243 GCATACAGAGTTCATTCCTAGTCTAAGATCGGACCGAACGGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACAGAGGGTTACGACAGCACATGCTGGG
* *
19313308 CTCGGGCATGTGCTGGTACCATTTTTTCTTCATCGGGGCACCATAATCGAAGCATCGCCGGAGAA
66 CTCGAGCATGTGCTAGTACCATTTTTTCTTCATCGGGGCACCATAATCGAAGCATCGCCGGAGAA
* ***
19313373 CCTGATCGGTGGCATTGGGGTTACGGTGAGCGGGGGGGCCGGAGGGGGTGTGCACACATGATGTG
131 CCTGATCGATGGCATTGGGGTTACAACGAGCGGGGGGGCCGGAGGGGGTGTGCACACATGATGTG
*** *
19313438 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTTAC
196 CGATGGGTGCCCATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
19313503 ACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAAT
*
19313568 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTGTTAGCTGATTTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCAAGTTGTTAGCTGATTTTTTTTG
* *
19313633 TGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACACCTTCCGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACACCTTCCGAAAAA
** *
19313698 TTTTAAAAAATCCCAAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATAAGTCGTCTTG
456 TTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTG
19313763 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * * * *
19313828 TGGCATGCAAAAATACAAAGATGTACCTAAATTCACCTACTACCCTATCGATCCACGGCTTGCGC
586 TGGCA-GCAAAAATACAAAGATGTACCTAAACCCACCAACCACCCTATCGATCAACGACTTGCGC
* * ** ** ** *
19313893 ATCCTGTCTCTTTGGTCGGCATAGTGCCCGCCCGCCCGCCCGTTCGTTTTGTCAGTTGGCTTAT
650 ATCCCGTCTCTCTGGTCGGCATAGTGCCCGCCCGCCAACCCGTTCGTTTCATCAGTTCACTTAG
* * * **
19313957 GCATATGGAGTTCATTCCCAGTCTAACATCGGACCGGACAGAGGGTTAC-AGCAGCACATTTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACAGAGGGTTACGA-CAGCACATGCTGG
* ** * * *
19314021 GCTCGAGCATGTGCTAGTGCCGCA-TTTTTCTTTGTCGGGGCACCA-ACGTCGGAGCATGGCCGG
65 GCTCGAGCATGTGCTAGT-AC-CATTTTTTCTTCATCGGGGCACCATA-ATCGAAGCATCGCCGG
* * * *
19314084 AGAACCTGATCGATGGCATTGGGGTTCCAACGATCGGGGGGGTCGG-GGGGGTGTGCGCACATGA
127 AGAACCTGATCGATGGCATTGGGGTTACAACGAGCGGGGGGGCCGGAGGGGGTGTGCACACATGA
* * *
19314148 TGTGCGATGGGTGCCCATAGTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
192 TGTGCGATGGGTGCCCATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
*
19314213 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG
257 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTA
** *
19314278 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGATTTTT
322 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCAAGTTGTTAGCTGATTTTT
* * *
19314343 TTTGTGCGTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGATCCAAAACTCCTTCCGA
387 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACACCTTCCG-
* * *
19314408 AAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCG
451 AAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCG
*
19314473 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * * *
19314538 GGCATTGGCA-CATAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCAATGAT
581 GGCATTGGCAGCA-A-AAATACAAAGATGTACCTAAACCCACCAACCACCCTATCGATCAACGAC
*
19314602 TTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCGCCCGCCAACCC-TCTCGTTTCATCGGTTC
644 TTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCGCCCGCCAACCCGT-TCGTTTCATCAGTTC
19314666 ACTTAG
708 ACTTAG
* * *
19314672 GCATACGGAGTTCATTCCCAGCCTAAGATTGGACCGAACTGAGGGTTACGACAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACAGAGGGTTACGACAG
19314726 TAAGATTGGC
Statistics
Matches: 681, Mismatches: 79, Indels: 17
0.88 0.10 0.02
Matches are distributed among these distances:
713 3 0.00
714 328 0.48
715 347 0.51
716 3 0.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (713 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACAGAGGGTTACGACAGCACATGCTGGG
CTCGAGCATGTGCTAGTACCATTTTTTCTTCATCGGGGCACCATAATCGAAGCATCGCCGGAGAA
CCTGATCGATGGCATTGGGGTTACAACGAGCGGGGGGGCCGGAGGGGGTGTGCACACATGATGTG
CGATGGGTGCCCATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCAAGTTGTTAGCTGATTTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACACCTTCCGAAAAA
TTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCAGCAAAAATACAAAGATGTACCTAAACCCACCAACCACCCTATCGATCAACGACTTGCGCA
TCCCGTCTCTCTGGTCGGCATAGTGCCCGCCCGCCAACCCGTTCGTTTCATCAGTTCACTTAG
Found at i:19314855 original size:26 final size:26
Alignment explanation
Indices: 19314826--19314878 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19314816 TGGGTTGACT
19314826 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
19314852 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
19314878 T
1 T
19314879 TAAGATCGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:19316684 original size:25 final size:25
Alignment explanation
Indices: 19316655--19316725 Score: 133
Period size: 25 Copynumber: 2.8 Consensus size: 25
19316645 GTTGACTTAG
*
19316655 GCATACAGAGTTCATTCCCAGTCAA
1 GCATACGGAGTTCATTCCCAGTCAA
19316680 GCATACGGAGTTCATTCCCAGTCAA
1 GCATACGGAGTTCATTCCCAGTCAA
19316705 GCATACGGAGTTCATTCCCAG
1 GCATACGGAGTTCATTCCCAG
19316726 CTTAAGATCG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTCAA
Found at i:19317597 original size:26 final size:26
Alignment explanation
Indices: 19317545--19317597 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19317535 GTTGACTTAG
*
19317545 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
19317571 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19317597 G
1 G
19317598 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19317746 original size:24 final size:24
Alignment explanation
Indices: 19317697--19317749 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
19317687 AGCATCACCC
* * *
19317697 GAGAACCGTAGCTTCACATGACCG
1 GAGAACCGTAACTTCACATAAACG
*
19317721 GAGAACCGTAACTTCACGTAAACG
1 GAGAACCGTAACTTCACATAAACG
19317745 GAGAA
1 GAGAA
19317750 TCAAGTTCTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.36, C:0.25, G:0.25, T:0.15
Consensus pattern (24 bp):
GAGAACCGTAACTTCACATAAACG
Found at i:19318240 original size:26 final size:26
Alignment explanation
Indices: 19318204--19318256 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19318194 GTTGACTTAG
19318204 GCATACAGAGTTCAGTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
*
19318230 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
19318256 G
1 G
19318257 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCCAGTCTAA
Found at i:19319137 original size:26 final size:26
Alignment explanation
Indices: 19319097--19319149 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19319087 GTTGACTTAG
19319097 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
19319123 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
19319149 G
1 G
19319150 ATCGAACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:19319513 original size:891 final size:894
Alignment explanation
Indices: 19317763--19320073 Score: 3193
Period size: 891 Copynumber: 2.6 Consensus size: 894
19317753 AGTTCTGGGT
* * *
19317763 CAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATGGTGAAAA
1 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* *
19317828 ATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTT
66 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
19317893 ACAAGCCATAAAAATGGCATTGGCATGCAGCAATATGAAGATGTGCCTAAACCCACCAACCACCC
131 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
19317958 TATCGATCCATGGCTTGCGCATCCTGCCTCTCTGGCCGACGTAG--TGCCCGCCTGCCCGCCCGC
196 TATCGATCCATGACTTGCGCATCCCGTCTCTCTGGCCG--GTAGTTTGCCCGCCCGCCCGCCCGC
* * *
19318021 CCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATTGAACTGGATC
259 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACC
* * * * *
19318086 GAGGGT-CATGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCAACCGATCCCTGGGTTACGCA
324 GAGGGTGC--GGTAGCAGGATCGGCAGCACACAGAGGGGGACCCAACCGATCCCCGGCTTGCGCA
*
19318150 TCCGGCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
387 TCCCGCCCTCT-----GCT-AGCGCCCG--CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
* * * * * *
19318215 TCAGTCCCAGTCTAAGCATACGGAGTTCAGTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG
444 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTACA
* * **
19318280 GCAGCACATGCTGGGCTATGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACTG
509 GCAGCACATGCTGGGCTAGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCACCA
* *
19318345 GAGCATCGCCGCAGAACTTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCGATGGGGGGT
574 GAGCATCGCCGCAGAACTTGACCGGCGGCATTGGGGTTCCGACGATCGGGCGGGC-ACGGGGGGT
* * * *
19318410 ATGCGCACATGATGTGTGATGGGTGCTGGTACATGGCCCTAATATGGGCCTCTTATCCCTCATCA
638 ATGCGAACATGATGTGCGATGGGTGCTGGTACATGGCCCTAATATGGGCCCCCTATCCCTCATCA
* *
19318475 AACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAA
703 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCAA
**
19318540 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTT
768 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATCATCACAAAATCTTGTACACTTCTAGTTTT
* * **
19318605 TAGCTGAATTGTTTTGTGTATGCCCACAAAAATACAAGGATCGTGTCTACCAAGTTTGGGGCC
833 TAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-C
* *
19318668 CAAAA-TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAATTCGTGAAAA
1 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* *
19318732 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTT
66 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
19318797 ACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTA-CAACC
131 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
19318861 TATTGATCCATGACTTGCGCATCCCGTCTCTCTGGCCAGTGTAGTTCTCCCCCGCCCGCCCGCCC
196 TATCGATCCATGACTTGCGCATCCCGTCTCTCTGGCC-G-GTAGTT-T-GCCCGCCCGCCCGCCC
*
19318926 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGA
257 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGA
*
19318991 CCAAGGGCTGCGGTAGCAGGATCGGCAGCACACAGAGGGGGACCCAACCGATCCCCGGCTTGCGC
322 CCGAGGG-TGCGGTAGCAGGATCGGCAGCACACAGAGGGGGACCCAACCGATCCCCGGCTTGCGC
* * *
19319056 ATCCCG-CCTCT-CT-G-G-CCG-GCTCGTTTCGTTGGTTGACTTAGGCATACGGAGCTCATTCC
386 ATCCCGCCCTCTGCTAGCGCCCGCGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC
*
19319115 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGAATCAAGGGTTACAGCAGCA
451 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGAACCAAGGGTTACAGCAGCA
* * *
19319179 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCAGAGCAT
515 CATGCTGGGCTAGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCACCAGAGCAT
* * * ** * *
19319244 CGCCTG-TGAAAC-TGACTGGCGGCATTGGGGTTCTGGTGATCGGGCGGGC-CGGGTGGTGTGCG
580 CGCC-GCAG-AACTTGACCGGCGGCATTGGGGTTCCGACGATCGGGCGGGCACGGGGGGTATGCG
* * * *
19319306 AACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCT
643 AACATGATGTGCGATGGGTGCTGGTACATGGCCCTAATATGGGCCCCCTATCCCTCATCAAACCT
* *
19319371 CGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAA
708 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCAATTAAA
*
19319436 GTTTCTGAAATGGGGACACTTTTTTCAAATCATCACAAAATCTTGTACACTT-TGAGTTTTTAGC
773 GTGTCTGAAATGGGGACACTTTTTTCAAATCATCACAAAATCTTGTACACTTCT-AGTTTTTAGC
* * *
19319500 TGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCACGTCTTCCAAGTTTGGGGC
837 TGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
*
19319558 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
1 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* * * *
19319623 AGAGAAAACGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGAACCATTATATGAATTT
66 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
19319688 ACAAGCCGTAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACTCACCTACCACCC
131 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* ** * * *
19319753 TATCGATCCACGACTACCGCATCCCGTCTCTCTGGCCGG-CGTTGTGCCCGCCCACCCGCCCG-T
196 TATCGATCCATGACTTGCGCATCCCGTCTCTCTGGCCGGTAGTT-TGCCCGCCCGCCCGCCCGCC
* * * *
19319816 CTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATAGAAAC-AGACC
260 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG-AACTGGACC
* * ** * **
19319880 GAGGGTTGTGGTGGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGTTCAT
324 GAGGG-TGCGGTAGCAGGATCGGCAGCACACAGAGGGGGACCCAACCGATCCCCGGCTTGCGCAT
* *
19319945 CCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATATAGAGT
388 CCCG-CCCTCT-----GCT-AGCGCCCG--CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
* * * *
19320010 TCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTAC
444 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTAC
19320074 GACAGCAAGA
Statistics
Matches: 1250, Mismatches: 126, Indels: 63
0.87 0.09 0.04
Matches are distributed among these distances:
887 116 0.09
888 17 0.01
889 9 0.01
890 8 0.01
891 408 0.33
892 38 0.03
893 188 0.15
894 4 0.00
895 2 0.00
896 3 0.00
897 2 0.00
898 2 0.00
899 3 0.00
900 2 0.00
902 86 0.07
903 42 0.03
904 172 0.14
905 5 0.00
906 6 0.00
907 135 0.11
908 1 0.00
909 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (894 bp):
CAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCATGACTTGCGCATCCCGTCTCTCTGGCCGGTAGTTTGCCCGCCCGCCCGCCCGCCC
GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGA
GGGTGCGGTAGCAGGATCGGCAGCACACAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCC
GCCCTCTGCTAGCGCCCGCGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTACAGCAGCACATGCT
GGGCTAGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCACCAGAGCATCGCCGC
AGAACTTGACCGGCGGCATTGGGGTTCCGACGATCGGGCGGGCACGGGGGGTATGCGAACATGAT
GTGCGATGGGTGCTGGTACATGGCCCTAATATGGGCCCCCTATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCAATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATCATCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTGTT
TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
Found at i:19320035 original size:26 final size:26
Alignment explanation
Indices: 19319999--19320051 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19319989 GTTGACTTAG
*
19319999 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
*
19320025 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
19320051 G
1 G
19320052 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:19320160 original size:185 final size:185
Alignment explanation
Indices: 19319840--19320236 Score: 544
Period size: 185 Copynumber: 2.1 Consensus size: 185
19319830 GTTGGCTTAG
* ** *** *
19319840 GCATACGGAGTTCATTCCTAGTCTAAGATAGAAACAGACCGAGGGTTGTGGTGGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATAGAAACAGACCGAGGGTTACGACAGCAAGATCGGCA
* * *** * *
19319905 GCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGTTCATCCCGCCCCTCTGGCCAGCTGAGCGC
66 GCACGTAGAAGGGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCAGCTGACCAC
* * * *
19319970 CCGCACGCTTGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCTAGTCTAA
131 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
19320025 GCATATGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTACGACAGCAAGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-AGAAACAGACCGAGGGTTACGACAGCAAGATCGGC
* **
19320089 AGCACGTAGAAGGGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTTTGGCTGGCTGACCA
65 AGCACGTAGAAGGGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCAGCTGACCA
*
19320154 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
130 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
19320210 GCATACGGAGTTCATTCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
19320237 CATACAGAGT
Statistics
Matches: 184, Mismatches: 27, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
185 182 0.99
186 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.22
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATAGAAACAGACCGAGGGTTACGACAGCAAGATCGGCA
GCACGTAGAAGGGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCAGCTGACCAC
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:19320214 original size:26 final size:26
Alignment explanation
Indices: 19320184--19320262 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
19320174 GTTGACTTAG
19320184 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19320210 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19320236 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19320262 G
1 G
19320263 ATCAGACCGA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19322466 original size:906 final size:897
Alignment explanation
Indices: 19320210--19323272 Score: 3738
Period size: 906 Copynumber: 3.4 Consensus size: 897
19320200 CCCAGTCTAA
* * *
19320210 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAAT
1 GCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACT
* * * *
19320275 CGAGGGTTGCGACAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTAGCCGGGG
* * *
19320340 CACCATCGCCAGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCCCG-CGATC-GGGGG
131 CACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGACATTGGGGTT-CCGACGATCAGGGGG
*
19320403 GCCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
195 GCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
19320468 TCCCTCATCAAACGTTGAGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
260 TCCCTCATCAAACGTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
19320533 CCAGTAGCCATTAAAGTGTCT-AGAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACA
325 CCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * **
19320597 CTTCGAGTTTTTAGCTGAATTTTTTTTGCATGGCAACAAAAATA-AAGGATCCCGTCTAAAAAAG
389 CTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC-AACCAAG
*
19320661 TTTGGGGCCAAAACTCTTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
453 TTTGGGGCCAAAACTCCTT-CAAAAAAATTTTAAAAAATCCCGAACCG-AAAAA-TTTCAAAAAT
*
19320726 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGT
515 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
19320791 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCGCC
580 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
19320856 TACCACCCTATCGATCCACGGCATGCAG-ATCCCGTCCCTCTGGCCGACGTAGTGCCCGGCCACC
645 TACCACCCTATCGATCCACGTCTTGC-GCATCCCGTCTCTCTGGCCGGCATAGTGCCC-G--ACC
* * * *
19320920 TGTGGCCCG-TCGCCCGCTCATTT-TTCCGGTTGGCTTAGGCATACAGGGTTCATTCCCAGTCTA
706 ----GCCCGCTCG-CTGCTCATTTCAT-CAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTA
* * * ** **
19320983 AGATC-AGACTGGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGTAGAAAGTTACCCGACCGA
765 AGATCGA-ACCGGACTGAGGGTTGCGGCAGTAGGATTGGCAGCACGTAGAGGGGGACCCGACCGA
* * * * **
19321047 TCCCCGACTTGCGTATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTT-TCGTGGTTTG
829 TCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACGCTCATTCT-GTGG-TTG
19321111 ACTTAG
892 ACTTAG
*
19321117 GCATACGGAGTTCATTCCCAA--T---C-TA---AG---ATT----G-----GA-CTG--C-AC-
1 GCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACT
* * * *
19321156 CGAGGGTTGCGGCAGCCCATGATGGGCTCGGGCATGTGCTGTTGCCGCATTTTTCTTCA-CCGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTT-AGCCGGG
19321220 GCACCATCGCCGGAGCATCGTCAGAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCGA
130 GCACCATCGCCGGAGCA---T-----CA---CCGGAGAACCTGACCGGCGACATTGGGGTTCCGA
* ** *
19321285 CGATCGGGGGGGCCTAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
184 CGATCAGGGGGG-CGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
19321350 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAAGAGCATTTGAGATTT
248 ATTGGCCCCCTATCCCTCATCAAACGTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTT
19321414 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
312 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
19321479 AAATCTTGTACACCTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAA-AAAAAGTACAAGGAT
377 AAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAA-TACAAGGAT
* * * * *
19321543 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATATTAAAAAATCCCAAACTGCAAA
440 CACGTCAACCAAGTTTGGGGCCAAAACTCCTTC-AAAAAAATTTTAAAAAATCCCGAACCG-AAA
* * **
19321608 AATATTCAAAAATCATGAAAAATAGAAAGCGAGTCGTCTTAACATGAAACTTCACGTGAAGGCTT
503 AAT-TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
19321673 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT
567 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT
* * *
19321738 GCCTAAAGCCACCTACCACCTTATCGATCCACGTCTTGCGCATCCTGTCTCTCTGGCCGGCATAG
632 GCCTAAACCCACCTACCACCCTATCGATCCACGTCTTGCGCATCCCGTCTCTCTGGCCGGCATAG
* * *
19321803 TGCCTGACCGCCCGCTCGTCTGCTCATTTCGTCAGTTGGCTTAGGCATACAGAGTTCACTCCCAG
697 TGCCCGACCGCCCGCTCG-CTGCTCATTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCCCAG
* * * * **
19321868 TGTAAGATCGAACCGGACTGAAGGTTGTGGTAGCT-GGATTGGCAGCACACAGAGGGGGACCCGA
761 TCTAAGATCGAACCGGACTGAGGGTTGCGGCAG-TAGGATTGGCAGCACGTAGAGGGGGACCCGA
*
19321932 CCGATCCCCGGCTTGCGCATCTCACCCCTCTGGCCGGCTGAGTGCCCGCACGCTCATTCTGTTGG
825 CCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACGCTCATTCTG-TGG
19321997 TTGACTTAG
889 TTGACTTAG
* * *
19322006 GCATATGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
1 GCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAC
* * * *
19322071 T-GAGGGTTGCGGCAACAAATGCTGGGCTCGAGCATGTGCTGGTGCCCCATTTTTCTTAGCCAGG
65 TCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTAGCCGGG
* * * *
19322135 GCACCATCGTCGGAGCATCGCCGGAGAACCTGATCGACGACATTGGGGTTCCGACGATCAGGGGG
130 GCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCAGGGGG
* * * * *
19322200 GTCGGGGGTTGGTGTGCACACATGTTGTGCAATGGGTGCTGGCACTTGGCCCTTATATTGGCCCC
195 G-CGGGGG--GGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * * *
19322265 ATATCCCTTATCAAA-GCTCGAGAACTCAAACCCCCTTCAAGAGCATTTGAGATTTTACAGGTTT
257 CTATCCCTCATCAAACG-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
19322329 GCTACCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
321 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
19322394 ACACTTCGAGTTTTTAGCTGAATCTTTTTGTACATGCCAACAAAAATACATGGATCATGTCCACC
386 ACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACC
* * * * * *
19322459 AAGTTTGGGTCCAAAAATTCTTCCAAAAAAGTTTTAAAAAAATCCCGAACCGTAAAATGTTTTAA
450 AAGTTTGGGGCCAAAACTCCTT-CAAAAAAATTTT-AAAAAATCCCGAACCG-AAAA-ATTTCAA
* * * * *
19322524 AAATCGTAAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGAGCA
511 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
19322589 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACC
576 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACC
* * *
19322654 CACCTACCACCCTATCGATCTACGAT-TTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCGCC
641 CACCTACCACCCTATCGATCCACG-TCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGAC
* * ** * * *
19322718 CGCCAGC-C-CT-CTCGTTTCATCAGTTCACTTAGGCATACGGAGTTCATTCCCAGCCTAAGATT
705 CGCCCGCTCGCTGCTCATTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC
* ** * * *
19322780 GGACCAAACTGAGGGTTGCGACAGTAAGATTGGCAGCACGTAGAGGGGGACCCGATCGATCCCCG
770 GAACCGGACTGAGGGTTGCGGCAGTAGGATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCG
* ** * * *
19322845 GCTTGTGCATCCCACCCCTCTGGCCAACTGAGTGCCCGTACGCTCGTTTCATG-GGTTGACTGAG
835 GCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACGCTC-ATTC-TGTGGTTGACTTAG
* * *
19322909 GCATACGGAGTTCATTCCCAATCTAGGCATACGGAGTTCATTCCCAGTCTTAAGATCGGATCAGA
1 GCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTC-TAAGATCAGA-CCGA
* * * *** * *
19322974 -TCAAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATTTTTTTCTTCGTCGG
64 CTCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTAGCCGG
* * * * * * * *
19323038 GGCACCACCGCCGGAGCATCATCGGAGAACTTGGCCGGTGGCATTGGGGTTCCAACAATCGAGAG
129 GGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATC-AG-G
* **
19323103 GGCAAAGCGGGGGGGTGTACGCACATGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGC
192 GG---GGCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
19323168 CCCCTATCCCTCATCAAACTTC-AGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGG
254 CCCCTATCCCTCATCAAACGTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
19323232 TTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
318 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
19323273 AGCTTAGGCA
Statistics
Matches: 1857, Mismatches: 219, Indels: 161
0.83 0.10 0.07
Matches are distributed among these distances:
881 71 0.04
882 1 0.00
883 1 0.00
884 1 0.00
885 2 0.00
886 2 0.00
888 5 0.00
889 171 0.09
890 7 0.00
891 5 0.00
892 36 0.02
893 12 0.01
894 204 0.11
895 248 0.13
896 11 0.01
898 4 0.00
901 5 0.00
902 2 0.00
903 191 0.10
904 162 0.09
905 9 0.00
906 384 0.21
907 236 0.13
908 8 0.00
909 1 0.00
910 2 0.00
911 2 0.00
912 1 0.00
913 1 0.00
914 1 0.00
915 71 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACT
CGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTAGCCGGGG
CACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCAGGGGGG
CGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACGTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTT
GGGGCCAAAACTCCTTCAAAAAAATTTTAAAAAATCCCGAACCGAAAAATTTCAAAAATCGTGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGTCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGACCGCCCGCTCGC
TGCTCATTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACTG
AGGGTTGCGGCAGTAGGATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
CCACCCCTCTGGCCGGCTGAGTGCCCGCACGCTCATTCTGTGGTTGACTTAG
Found at i:19323476 original size:26 final size:26
Alignment explanation
Indices: 19323440--19323492 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19323430 GTTGAGTTAG
19323440 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19323466 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19323492 G
1 G
19323493 ATTGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19325143 original size:25 final size:25
Alignment explanation
Indices: 19325114--19325163 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
19325104 AGGCATACGA
19325114 AGTTCATTCCCAGTCTAAGCATAGG
1 AGTTCATTCCCAGTCTAAGCATAGG
19325139 AGTTCATTCCCAGTCTAAGCATAGG
1 AGTTCATTCCCAGTCTAAGCATAGG
19325164 CTTAAGGGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (25 bp):
AGTTCATTCCCAGTCTAAGCATAGG
Found at i:19325502 original size:382 final size:387
Alignment explanation
Indices: 19324771--19325539 Score: 1040
Period size: 382 Copynumber: 2.0 Consensus size: 387
19324761 CTTCACACGA
19324771 AGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
1 AGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* *
19324836 AAATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGCCTCTCTGGCTG
66 AAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCATCTCGCCTCTCTGGCTG
* * **
19324901 GCGTTGCGCTCGCCCGCCTGCCCGTGGGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCC
131 GCGTAGCGCT---CCGCCTGCCCGTGGGTTTCGTCGGTTGGCTTAGCCATACAGAGTTCATTCCC
* * * * *
19324966 AGTCTAAGAGATGACCGGACCGAGGGTTACGACAGTAGGATTGGCAGCACGCAGAGGGCGACCTG
193 AGTCTAAGAGATGACCGAACCGAGGGTTACGACAGCAGGATCGGCAGCACACAGAGGGCGACCCG
*
19325031 GTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACACTCGTTTCGTGG
258 GTCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAACGCCCGCACACTCGTTTCGTGG
19325096 GTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATA-GGAGTTCATTCCCAGTCTAAGCA
323 GTTGACTTAGGCATACGAAGTTCA-TCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGCA
19325160 T
387 T
*
19325161 AGGCTTAAGGGAGC-ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATG
1 AGGCTTAAGGGA-CAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
*
19325225 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCATC-CTGCCTCTCTGG-
65 AAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCATCTC-GCCTCTCTGGC
** *
19325288 TCGGCGTAG-G-T-C-CC-GCCCGTTTGTTTCGTCGGTTGGCTTAGCCATACAGAGTTCATTCCT
129 T-GGCGTAGCGCTCCGCCTGCCCGTGGGTTTCGTCGGTTGGCTTAGCCATACAGAGTTCATTCCC
* * ** **
19325348 AGTCTAA-A-ATTGGATCGAACTGAGGGTTGTGGTAGCAGGATCGGCAGCACACAGAGAGG-GAC
193 AGTCTAAGAGA-T-GACCGAACCGAGGGTTACGACAGCAGGATCGGCAGCACACAGAG-GGCGAC
* * * * * * * ** *
19325410 CCGGTCGATCCCCGGCTTGCGCGTCCCATCCCTCTGGCTGGTTGAGCGCCTGCATGCTCGTTTGG
255 CCGGTCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAACGCCCGCACACTCGTTTCG
* * *
19325475 TGGGTTTACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATATGGAGTTCATTCGCAGTCTAAG
320 TGGGTTGACTTAGGCATACGAAGTTCATCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAG
19325540 ATCGGACCAG
Statistics
Matches: 336, Mismatches: 36, Indels: 22
0.85 0.09 0.06
Matches are distributed among these distances:
380 1 0.00
381 18 0.05
382 182 0.54
383 4 0.01
384 1 0.00
388 1 0.00
389 3 0.01
390 125 0.37
391 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.25
Consensus pattern (387 bp):
AGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
AAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCATCTCGCCTCTCTGGCTG
GCGTAGCGCTCCGCCTGCCCGTGGGTTTCGTCGGTTGGCTTAGCCATACAGAGTTCATTCCCAGT
CTAAGAGATGACCGAACCGAGGGTTACGACAGCAGGATCGGCAGCACACAGAGGGCGACCCGGTC
GATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAACGCCCGCACACTCGTTTCGTGGGTT
GACTTAGGCATACGAAGTTCATCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGCAT
Found at i:19325516 original size:25 final size:26
Alignment explanation
Indices: 19325488--19325539 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
19325478 GTTTACTTAG
19325488 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19325513 GCATATGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19325539 G
1 G
19325540 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19326419 original size:26 final size:26
Alignment explanation
Indices: 19326389--19326438 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19326379 AACTTAGGCA
19326389 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
*
19326415 TACGGAGTTCATTCCCAGTGTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
19326439 ATCAGATCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:19327320 original size:26 final size:26
Alignment explanation
Indices: 19327290--19327342 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19327280 GTTGACTTAG
*
19327290 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19327316 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19327342 G
1 G
19327343 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19327466 original size:904 final size:896
Alignment explanation
Indices: 19325161--19328281 Score: 4027
Period size: 899 Copynumber: 3.5 Consensus size: 896
19325151 GTCTAAGCAT
*
19325161 AGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGA
1 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGA
* * *
19325226 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCATCCTGCCTCTCTGGTCG
66 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCG
* * * * * *
19325291 GCGTAG-G---TCCCG--C-CCGTTTGTTTCGTCGGTTGGCTTAGCCATACAGAGTTCATTCCTA
131 GCGTAGTGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* ** * * * * *
19325349 GTCTAAAATTGGA-TCGAACTGAGGGTTGTGGTAGCAGGATCGGCAGCACACAGAGAGGGACCCG
196 GTCTAAGATCAGACTCGGACCGAGGGTTGTGGCAACAGGATCGGCAGCACACAGAGGGGGACCCG
* * ** * * * **
19325413 GTCGATCCCCGGCTTGCGCGTCCCATCCCTCTGGCTGGTTGAGCGCCTGCATGCTCGTTTGGTGG
261 ATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGG
* * *
19325478 GTTTACTTAGGCATACGGAGTTCA-TCCCAGTCTAAGCATATGGAGTTCATTCGCAGTCTAAGAT
326 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* ** * * * *
19325542 CGGACCAGACCGACAGTTGAGGCAGCACATACTGGGCTCGAGCATGTGCGGGTGTCACATTTTTC
391 CGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTC
* ** * * *
19325607 TTCGTCGGGTCACCATCGCTAGAGCATCACCGGAGAACCTGACCAGCGACAGTGGGGTTCCGACG
456 TTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
* * * * * *
19325672 ATCGGGGGGGTCGGGGAGGGTGTGAGCAAATAATGTGTGAT-GGTGCTGGTGCTTGGCCCTTATA
521 ATC-GGGGGGCCGGAG-GGGTGTGCGCACATAATGTGCGATGGGTGCTGGTGCTTAGCCCTTATA
* *
19325736 TTGGCCCCCTATCCCTCATCAAACCATGAGAACTCACACCCCCTTAAAGAGCATTTGAGATATTA
584 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * * *
19325801 CAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTGACAAA
649 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGATACTTTTTTCAAATGGTCACAAA
* *
19325866 ATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCACGCCAACAAAAATACAAGGATCAC
714 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * *
19325931 ATCTACCAAGTTTGGGGCCAAAA-CTCTTTCCCAAAAAATTTTAAAAAATCTC-GAACCGCAAAA
779 GTCTACCAAGTTTGGGGCAAAAATC-CTTT--CAAAAAATTTTAAAAAATC-CGGAACCAC-AAA
** * * * **
19325994 AGTTTTGAAAATCATGAAAAA-AAAAAATGAGTCATCTTGCCATGAAACTTCACACGA
839 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGA
*
19326051 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGTAGAAATATGA
1 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGA
* *
19326116 AGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCTCATCCCGCCTCTCTGGCCG
66 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCG
* *
19326181 GCGTAGTGCCCGCCCGCCCGACCGCTCGTTTCATCGGTTGGCTCAGGCATACGGAGTTCATTCCC
131 GCGTAGTGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * * *
19326246 AGTGTAAGATTAG-GTCAGACCGAGGGTTGTGGCAGCAAGATGGGCAACACACAGAGGGGGACCC
195 AGTCTAAGATCAGACTCGGACCGAGGGTTGTGGCAACAGGATCGGCAGCACACAGAGGGGGACCC
* * * * * * * *
19326310 GACCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCAGCTGAGAGCCCGCATGCTCATTTCATG
260 GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATG
* * *
19326375 GGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTGTAAGA
325 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * * *
19326440 TCAGATCGAATCAAGGGTTGTGCCAGCACATGCTGGGCTCGAGCATGTCCTGATGCCACATTTTT
390 TCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTT
** * * * * *
19326505 CTTCACCTGGGCACCATCGTCGGAGCATCACTGGAGAACCTGACCGACGGCATTGGGGTTCCGGC
455 CTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
*
19326570 GATCGGAGGGGCCGGAGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTGCCTAGCCCTTATA
520 GATCGG-GGGGCCGGAGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTGCTTAGCCCTTATA
* *
19326635 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACGCCCCCTTAAAAAGCATTTGAGATTTTA
584 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
19326700 CAGGTTTGCTACCAGTAGCTATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAA
649 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGATACTTTTTTCAAATGGTCACAAA
* *
19326765 ATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCAC
714 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
19326830 GTCTACCAAGTTTGGGGCAAAAAATCCTTTCAAAAAATTTTTAAAAAATCCGGAACCACAAAATG
779 GTCTACCAAGTTTGGGGC-AAAAATCCTTTCAAAAAA-TTTTAAAAAATCCGGAACCACAAAA-G
* *
19326895 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTCCACGTGA
841 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGA
* *
19326951 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGA
1 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGA
** * ** *
19327016 AGATGTGCCTAAACCCACCTACCACGTTATCGATCCACAGCTTGCGCATCCCGTTTCTCTGGCTG
66 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCG
* *
19327081 GCGTA-TCGCCCGCCCGCCCGCCTGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCG
131 GCGTAGT-GCCCGCCCG--C-CC-GCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* ** * * *
19327145 TTCCCAATCTAAGATCAGACT-GGATTGAGGGTTGCGGCAACAGGATCGGCAGCGCATAGAGGGG
190 TTCCCAGTCTAAGATCAGACTCGGACCGAGGGTTGTGGCAACAGGATCGGCAGCACACAGAGGGG
* ** *
19327209 GACTCGATCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGTGCCCGCACGCTCGTT
255 GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTT
* *
19327274 TCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTC
320 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
*
19327339 TAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTTG-GCCATGTGCTGGTGCCAC
385 TAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAG-CATGTGCTGGTGCCAC
* * *
19327403 ATTTTTCTTTGTCGGGGCACCATTGCCGGAGCATCACCGGAGAACCTGATCGGCGGCATTGGGGT
449 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGT
* * * **
19327468 TCCGACGATCGGGGGGCC-GAGGGGTGTGCGGACATGATGTGCAATGGGTGCTGGTATTTAGCCC
514 TCCGACGATCGGGGGGCCGGAGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTGCTTAGCCC
* * * *
19327532 TTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTCAATGAGCATTTGAGA
579 TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
19327597 TTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACT-TTTTTTTCAAATGGT
644 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA-TACTTTTTTCAAATGGT
* * * *
19327661 CACAAAATCTTATACAATTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
708 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * **
19327726 GATCATG-CTTACCAAGTTTGGGGCCAAAATGCCCTTCGAAAAAATTTTAAAAAATCCTGGATTG
773 GATCACGTC-TACCAAGTTTGGGGCAAAAAT-CCTTTC-AAAAAATTTTAAAAAATCC-GGA-AC
* * * *
19327790 CA-AAAAGTTGCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAAGTTGACGTGA
833 CACAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGA
* * **
19327853 AAGCTTCAGGGACCATTGTATGAAATTTACAAGCCATAAAAATGGCATTGATATGTAGAAATATG
1 AGGCTTAAGGGACCATTGTATG-AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATG
* * * *
19327918 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACCTACGCATCCCGCCTCTCTGGCC
65 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCC
* * ** * *
19327983 GGTGTAGTTCCCGCCCGCCCGCCCGCTCGTTTCGTCAATTGGCTTAGTCATACGGGGTTCATTCC
130 GGCGTAGTGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * ** * *
19328048 CAGTCTAAGATCAAAC-CGGATCGAGGGTTATGTCAACAGGATCGACAGCATGCAGAAGGTGACC
194 CAGTCTAAGATCAGACTCGGACCGAGGGTTGTGGCAACAGGATCGGCAGCACACAGAGGGGGACC
* * * * *
19328112 CGATCGATCCTCGGCTTGCGCATCTCGCCCCTCTGGCCGATTGAGCACCCGCGCGCTCGTTTCAT
259 CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCAT
* * * *
19328177 GGGTTGACTTAGGCATACGGAGTTTATTCCCAGTGTAAGAATACGGAGTTCATTCCCAGACTAAG
324 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * *
19328242 ATTGGACCGGACCGAGGGCTGCGGCAGCACATGCTGGGCT
389 ATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
19328282 TGTTTCGTCG
Statistics
Matches: 1934, Mismatches: 261, Indels: 63
0.86 0.12 0.03
Matches are distributed among these distances:
890 129 0.07
891 1 0.00
894 4 0.00
896 1 0.00
898 198 0.10
899 641 0.33
900 175 0.09
901 8 0.00
902 326 0.17
903 131 0.07
904 319 0.16
905 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCG
GCGTAGTGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACTCGGACCGAGGGTTGTGGCAACAGGATCGGCAGCACACAGAGGGGGACCCG
ATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGG
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
CGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTC
TTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
ATCGGGGGGCCGGAGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTGCTTAGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGATACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
CTACCAAGTTTGGGGCAAAAATCCTTTCAAAAAATTTTAAAAAATCCGGAACCACAAAAGTTTCA
AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGA
Found at i:19328241 original size:26 final size:26
Alignment explanation
Indices: 19328191--19328242 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19328181 TGACTTAGGC
* **
19328191 ATACGGAGTTTATTCCCAGTGTAAGA
1 ATACGGAGTTCATTCCCAGACTAAGA
19328217 ATACGGAGTTCATTCCCAGACTAAGA
1 ATACGGAGTTCATTCCCAGACTAAGA
19328243 TTGGACCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGACTAAGA
Found at i:19328497 original size:26 final size:26
Alignment explanation
Indices: 19328460--19328512 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19328450 GTTGACTTAG
*
19328460 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19328486 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19328512 G
1 G
19328513 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19330279 original size:26 final size:26
Alignment explanation
Indices: 19330250--19330302 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19330240 GTTGACTTAG
19330250 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
19330276 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19330302 G
1 G
19330303 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19331163 original size:26 final size:26
Alignment explanation
Indices: 19331127--19331179 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19331117 GTTGACTTAG
*
19331127 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19331153 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19331179 G
1 G
19331180 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19331896 original size:26 final size:26
Alignment explanation
Indices: 19331860--19331911 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19331850 TTGACTTAGA
19331860 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
19331886 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
19331912 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:19332355 original size:26 final size:26
Alignment explanation
Indices: 19332315--19332367 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19332305 GTTGACTTAG
*
19332315 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
19332341 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
19332367 G
1 G
19332368 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:19332407 original size:271 final size:272
Alignment explanation
Indices: 19331885--19332407 Score: 676
Period size: 271 Copynumber: 1.9 Consensus size: 272
19331875 CCCAGTCTAA
* * * * * * * *
19331885 GCATACGGAGTTCATTCCTAGTCTAAGATTGGATCGGATCAAGGGTTGTGGCAGCAGGATTGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGTGGCAGCAGGATCGGCA
* * * * *
19331950 GTATGCCGAGGGCGACCCGATCATTCCCCGGCTTGCGCATCTCACCCTTCTGGCCGACTGAGCGC
66 GTACGCAGAGGGCGACCCGACCATTCCCCGGCTTGCGCATCCCACCCATCTGGCCGACTGAGCGC
* * * *
19332015 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTTATTCCCAGTCTAAGCATATGGAG
131 CCGCACACTCGTTACGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAG
* * ** *
19332080 TTCATTCCCAGACTATGATCGGACTGGACCGAGGGTTACAGCAGCACATGCTGGGCTCGTTTCAT
196 CTCATTCCCAGACTAAGATCGGACCAGACCGAGGGTTACAGCAGCACATACTGGGCTCGTTTCAT
19332145 CGGTTGGCTTTG
261 CGGTTGGCTTTG
* * *
19332157 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGTGTTGTGGTAGCAGGATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGTGGCAGCAGGATCGGCA
* *
19332222 -TCACGCAGAGAGG-GACCCGACCGA-TCCCCGGCTTGCGCATCCCACCCATCTGGTCGGCTGAG
66 GT-ACGCAGAG-GGCGACCCGACC-ATTCCCCGGCTTGCGCATCCCACCCATCTGGCCGACTGAG
* * *
19332284 CG-CTGCACACTTGTTACGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
128 CGCCCGCACACTCGTTACGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACG
* * * * *
19332348 GAGCTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGTACATACTGGGCT
193 GAGCTCATTCCCAGACTAAGATCGGACCAGACCGAGGGTTACAGCAGCACATACTGGGCT
19332408 TAGGCATGTG
Statistics
Matches: 213, Mismatches: 35, Indels: 7
0.84 0.14 0.03
Matches are distributed among these distances:
271 106 0.50
272 104 0.49
273 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (272 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGTGGCAGCAGGATCGGCA
GTACGCAGAGGGCGACCCGACCATTCCCCGGCTTGCGCATCCCACCCATCTGGCCGACTGAGCGC
CCGCACACTCGTTACGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAG
CTCATTCCCAGACTAAGATCGGACCAGACCGAGGGTTACAGCAGCACATACTGGGCTCGTTTCAT
CGGTTGGCTTTG
Found at i:19333257 original size:26 final size:26
Alignment explanation
Indices: 19333217--19333269 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19333207 GTTGACTTAG
*
19333217 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
19333243 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
19333269 G
1 G
19333270 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:19334591 original size:857 final size:857
Alignment explanation
Indices: 19333243--19339269 Score: 7295
Period size: 887 Copynumber: 6.9 Consensus size: 857
19333233 CCCAGTCTAA
* * * * *
19333243 GCATACGGAGCTCATTCCCAGTCTAAGATCGGACC-AGATCGAGGGTTGCGACAGCACATGCTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * ** *
19333307 GCTCAGGCATGTGCT-GTGCCGCATTTTTCATCGTCGGGGCACCATCGCCGGAGCATGGCCAGAG
66 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCA----C----
* * * * * *
19333371 AACGTAACCGGTGAG-ATTGGGGTTCCGACGAT-AGGGGGGCCAGGGGGTATGCGCACATGATGT
123 --C-TGACCGGCG-GCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
19333434 GTGATGGGTGCTGGTACTTGGCCGTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
184 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
19333499 CACCCCCTTAAAGAGCATTTGAGAGTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAA
249 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19333564 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTGTTTT
314 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTT
* *
19333629 T-TGCATGCCGACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
378 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAA
* * * * *
19333693 AAATTTTAAAAAATCTTGAAACGTCAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTC
442 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
19333758 TTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTTCAAGCCATAAAAATGG
507 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
19333823 CATTGGCACGTAAAAATATGAAGATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGGTCG
572 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
19333888 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCATAGGC
637 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
19333953 ATACGGAGTTAATTCCCAGTCTAACATCAGACCAGACTGAGGGTTGCAGCAGCAGGATCGACAGC
702 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGC
* *** * * *
19334018 ACGCAAAGGGGGACCCGGTTGATCCCCAGCTTGTGCATCCAGCCCCTCTGGCCGGCTGAGCGCTC
767 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC-C
19334083 GCATGCTCGTTTCGTGGGTTGACTTAG
831 GCATGCTCGTTTCGTGGGTTGACTTAG
** *
19334110 GCATACTAAGTTCATTCCCAGTCTAAGATTGGACCGA-ACCGAGGGTTGCGGCAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAGACCGAGGGTTGCGGCAGCACATGCTGG
* *
19334174 GCCCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCACCTGACCGG
66 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCACCTGACCGG
* * *
19334239 CAGCATTGGGGTTTCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGC
131 CGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
19334303 TGGTACTTGGCCCTTAT-TGTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
195 TGGTACTTGGCCCTTATAT-TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
19334367 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG-AGCCATTAAAGTGTCTGAAATGGGGACACT
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
19334431 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
19334496 AAAAAAATACAAGGATCACGTCTACCAAGTTTCGGGACAAAACTCCTTCCAAAAAAGTTTTAAAA
389 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA-TTTTAAAA
* * *
19334561 AATCTTGAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTAGTCTTGCCATGAAA
453 AATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
19334626 CTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTAGAAGACATAAAAATGGCATTGGCATGT
518 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGT
*
19334691 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTC
583 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
19334756 TCTCTAGCCG--GTA-TAG--TACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTT
648 TCTCTGGCCGACGTAGT-GCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * * *
19334816 CATTCGCAGTCTAGGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATTGGCAGCACACAGAGGG
712 CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * *
19334881 GGACCCGACCGATCCTCGGCTTGTGCATCCCGCCTCTCTGACCGGCTGAGCGACCGCATGCTCGT
777 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CCGCATGCTCGT
*
19334946 TTCGTGAGTTGACTTAG
841 TTCGTGGGTTGACTTAG
* * *
19334963 GCATACGGAGTTCATCCCCAGTTTAAGCATACAGAGTTCATTCCCGGTCTAAGATCATACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT--TG-G---A---CC-G----AG-----ACC-GA-
* * * *
19335028 GGAGGCTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCAGGG
44 -G-GG-TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACC-GGG
* *
19335093 GCACCATCGTCGGAGCATCGTCGAAGAACCTGATCGGTGGCATTGGGGTTCCGGCGATCGGGGGG
105 GCACCATCGTC-G-G-A--G-C-----ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
* * * * *
19335158 GTCGGGGGGGTGTGCGCGCATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATAGTGTCCCCCT
159 G-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
19335223 AACCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
223 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* ** *
19335288 ACCAGTAGGTATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACA
288 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
19335353 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG
353 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * * *
19335418 TTTCGGGACAAAACTCCTTCCAAAAAAAGTTTAAAAAATCCCGAACC-TCAAAAAGTATAAAAAA
418 TTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCTCGAACCGT-AAAAAGTTTTAAAAA
* * * *
19335482 TCATGAAAAATAAAAAACGAGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTA
481 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
** * * *
19335547 TATGAATTTACAAGCCATAAAAATGGCATTCACAAGTAGAAATATGAAGATGTTCCTAAACCCAT
546 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
* *
19335612 CTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCGCACC
611 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-C-CACC
* * *
19335677 CGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCACTCCCAGTCTAAGATCGGACCAG
672 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * *
19335742 ACCGAGGGTT------GC---A---GCAGCATGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCG
737 ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * *
19335795 CATCCCGCCCCTCT-GCCTGGCTGAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAG
802 CATCCCGCCCCTCTGGCC-GGCTGAGCG-CCGCATGCTCGTTTCGTGGGTTGACTTAG
19335852 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-T-G-G---A---CC-G----AGA-C----C-G--
* * * * *
19335917 CAAGGGTTGCGGTAACACATGCTGGGCTCGAGCATGTGATGGTGTCACATTTTTCTTCACCGGGG
43 --AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGG
* * *
19335982 CAACATCGTCGGAGCATCGACGGAGAACCTGACCGGCGGCATTGGAGTTTCGGCGATCGGGGGGG
106 CACCATCGTC-G-G-A--G-C-----ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
* * *
19336047 CCGGGGGGTGTGTGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTAT
160 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
19336112 CCCTCATCAAACCTCGAGAACTTATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
225 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
19336177 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
290 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * ** *
19336242 TCGAGCTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTAAAAAGGT
355 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* ** * * **
19336307 TGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATC-CGGAACCACAAAAAGTTCTGAAGGTC
420 TGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTTAAAAATC
* * * * * *
19336371 ATTAGAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCATAAGGGACCATTGTA
483 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
** * *
19336436 TGAATTTACAAGAAATAAAAATGGCATTGGCATGTAAAAATATGAAGATGTGCCCAAACCCACCT
548 TGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
19336501 ACCACCCTATCGATGCACGGCTTGCGCATCTCGTCTCTCTGGCC-AGCGTAGTGCCCTCCCGCCT
613 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTG-CC-CAC-CC-
* * **
19336565 GCCCGCCTGCTCGTTTCATCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATGGGAC
673 G--C-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * ** * * *
19336630 CGGACTGAGGGTTGCGGTAGCAGGATCAACAACACGCAGAGGGGGACCCGATCGATCCCCGACTT
734 CAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* * * * *
19336695 GCGCATCCCGCCCCTCTGGCCGGCTGAGCACCTACACGCTCGTTTTGTGAGTTGACTTAG
799 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC-GCATGCTCGTTTCGTGGGTTGACTTAG
* *
19336755 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACCGATGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAGACCGAGGGTTGCGGCAGCACATGCTGG
* ** * *
19336819 ACTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCACGGTATCACCGTAG
66 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCG--TCGG-AGCACC-T-G
**
19336884 AACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
126 -ACC-G---G-CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
19336949 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTTGAGAACTTAC
185 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
19337014 ACCCCTTTAAAGAGCATTTGAGAATTTACAGGTTTGCTACCAGTAACCATTAAAGTGTCTGAAAT
250 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19337079 GAGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
315 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
19337144 TGCATGCCAACAAAATTACAAGGATCACGTGTACCAAGTTTGGGACCAAAACTCTTTCCAAAGAA
380 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA-AA
** * *
19337209 ATTTTAAAAAATC-CTGAACCGTAAAAAGTTTTCAAAAATTATGAAAAATAAAAAATGAGTCGTC
444 ATTTTAAAAAATCTC-GAACCGTAAAAAGTTTT-AAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
19337273 TTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
507 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19337338 GATTGGCATGCAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
572 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
19337403 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTT
637 CGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTT
** *
19337468 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTAAGGGTTGCGGCAGCAGGATCGG
698 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGG
* * * * * * * * * *
19337533 CAGCACGTAGAGGGGGACCCGGCCAATCTCCAGCTTGCGCATCCCGTCCCTTTGGCCGCCTAAGT
763 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
19337598 GCCCGCATGCTCGTATCGTGGGTTGACTTAG
828 G-CCGCATGCTCGTTTCGTGGGTTGACTTAG
** * * * * * *
19337629 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAGCG-GACCAAGAGTTACAGCAGCATATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
19337693 GCTCGGGCATGTGCTGGTGCCACATTTTTCTT-AGTCGGGGCACCATCGCCGGAGAACCTGACCG
66 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCA-CCGGGGCACCATCGTCGGAGCACCTGACCG
* ** *
19337757 ACGGCATTGGGGTTCCGATGATCGGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTG
130 GCGGCATTGGGGTTCCGGCGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
19337822 CTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCACACCCCCTTA
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
19337887 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGTGGACATT
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
** * * * * *
19337952 TTTTTCAAATCTTCACAAAATATTGTACACTTTGAGTTTTTACCTGATTTTTTTTGTGCATGCAA
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
19338017 AAAAAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAA
389 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAA
* * ** * *
19338082 AATCTCGTATCAAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAA
453 AATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
19338147 CTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
518 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGT
19338212 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
583 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
19338277 TCTCTGGCCGGCGTAGCGCCCGCCTGCTCCCTCGCTCGTTTCGTCGGTTGGCTTAGACATACGGA
648 TCTCTGGCCGACGTAGTGCCCACC--C-GCC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * *
19338342 GTTCATTCCCAATCTAAGATTAGACCAAAC-CATGGGTTGCGGTAGCAGGATCGGCAGCACGCAG
709 GTTCATTCCCAGTCTAAGATCAGACCAGACTGA-GGGTTGCGGCAGCAGGATCGGCAGCACGCAG
* * ** * * * * * *
19338406 AGCGGGACCTGATTGATCCTCGGCTTGCGCATCCCACCCTTCTGGCCGACTGAGTG-C-C-TGCG
773 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCGCATGCT
* *
19338468 CG-CTCATGGGTTGACTTAG
838 CGTTTCGTGGGTTGACTTAG
* * * *
19338487 GTATACGAAGTTCATTCCCAGTCTAAGATCT-TACC-AGACCGAGGGTTGTGGCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGGACCGAGACCGAGGGTTGCGGCAGCACATGCTG
* * * *
19338550 GGCTAGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGA
65 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAG---CA-C---
* * **
19338615 GAACTTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGGCTAGGGGGTGTGCGCACATGATGT
123 ---C-TGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
19338680 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
184 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
19338745 CACCCCCTTTAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAA
249 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
19338810 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
314 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
19338875 ATGCATGCCTACAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAAATCCTTTCGAAAA
379 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAA
* *
19338940 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAGCGAGTCGTCT
443 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
19339005 TG-CATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * * *
19339069 ATTGGCACATAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATTGATCCATGACTTGC
573 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
19339134 GCATCCCATCTCTCTGGCCGACATAGT----ACCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCA
638 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * *** * *
19339195 TACAGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCAGGATTGGCAGCA
703 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCA
*
19339260 CGTAGAGGGG
768 CGCAGAGGGG
19339270 CACCTAATCG
Statistics
Matches: 4524, Mismatches: 495, Indels: 290
0.85 0.09 0.05
Matches are distributed among these distances:
853 190 0.04
854 4 0.00
855 4 0.00
856 16 0.00
857 352 0.08
858 239 0.05
859 98 0.02
860 5 0.00
861 4 0.00
862 4 0.00
863 330 0.07
864 291 0.06
865 4 0.00
867 209 0.05
868 361 0.08
869 34 0.01
870 2 0.00
871 5 0.00
872 6 0.00
873 1 0.00
874 256 0.06
875 6 0.00
876 5 0.00
877 374 0.08
878 172 0.04
879 54 0.01
880 16 0.00
881 4 0.00
882 3 0.00
883 1 0.00
884 1 0.00
885 5 0.00
886 8 0.00
887 451 0.10
888 64 0.01
889 180 0.04
890 4 0.00
891 92 0.02
892 132 0.03
893 333 0.07
894 6 0.00
895 6 0.00
896 2 0.00
897 2 0.00
899 1 0.00
900 2 0.00
901 72 0.02
902 4 0.00
903 106 0.02
904 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (857 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAGACCGAGGGTTGCGGCAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCACCTGACCGG
CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAAT
CTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGACGTAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCGCATGCTCGTTTCGT
GGGTTGACTTAG
Found at i:19334605 original size:27 final size:27
Alignment explanation
Indices: 19334547--19334605 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
19334537 ACTCCTTCCA
* **
19334547 AAAAAGTTTTAAAAAATCTTGAACCAT
1 AAAAAGTTTTAAAAAATCGTGAAAAAT
19334574 AAAAAGTTTT-AAAAATCGTGAAAAAT
1 AAAAAGTTTTAAAAAATCGTGAAAAAT
19334600 AGAAAA
1 A-AAAA
19334606 CGAGTAGTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 14 0.50
27 14 0.50
ACGTcount: A:0.58, C:0.07, G:0.10, T:0.25
Consensus pattern (27 bp):
AAAAAGTTTTAAAAAATCGTGAAAAAT
Found at i:19335015 original size:26 final size:26
Alignment explanation
Indices: 19334963--19335015 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19334953 GTTGACTTAG
* *
19334963 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
19334989 GCATACAGAGTTCATTCCCGGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
19335015 G
1 G
19335016 ATCATACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:19335888 original size:26 final size:26
Alignment explanation
Indices: 19335852--19335904 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19335842 GTTGACTTAG
19335852 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19335878 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19335904 G
1 G
19335905 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19345016 original size:26 final size:26
Alignment explanation
Indices: 19344986--19345036 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19344976 TGACATAGGT
*
19344986 ATACAGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATACCCAGTCTAAGC
* *
19345012 ATACAGCGTTCATACCCAGTTTAAG
1 ATACAGAGTTCATACCCAGTCTAAG
19345037 ATCGGACTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATACCCAGTCTAAGC
Found at i:19348250 original size:26 final size:26
Alignment explanation
Indices: 19348221--19348293 Score: 119
Period size: 26 Copynumber: 2.8 Consensus size: 26
19348211 TAGGCATATA
*
19348221 GAGTTCATTCCCAGTCTAAGCATACG
1 GAGTTCATTCCCAGTCTAAGAATACG
*
19348247 GAGTTCATTCTCAGTCTAAGAATACG
1 GAGTTCATTCCCAGTCTAAGAATACG
*
19348273 AAGTTCATTCCCAGTCTAAGA
1 GAGTTCATTCCCAGTCTAAGA
19348294 TTGGACCGGA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
GAGTTCATTCCCAGTCTAAGAATACG
Found at i:19350040 original size:26 final size:26
Alignment explanation
Indices: 19350002--19350054 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19349992 GTTGACTTAG
*
19350002 GCATACAGTGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19350028 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19350054 G
1 G
19350055 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19350928 original size:25 final size:26
Alignment explanation
Indices: 19350897--19350948 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
19350887 TGAACTTAAG
19350897 GCATATGGAGTTCATTC-CAGTCTAA
1 GCATATGGAGTTCATTCTCAGTCTAA
19350922 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATATGGAGTTCATTCTCAGTCTAA
19350948 G
1 G
19350949 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 17 0.65
26 9 0.35
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (26 bp):
GCATATGGAGTTCATTCTCAGTCTAA
Found at i:19351028 original size:895 final size:893
Alignment explanation
Indices: 19347343--19353298 Score: 6334
Period size: 919 Copynumber: 6.7 Consensus size: 893
19347333 TAGGCATACA
*
19347343 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * *** *
19347408 ATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCG-CTAAAAAATCTGA
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTC-AGGGAACCTGA
* * * * **
19347472 CCGGCGGTATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCCCACATGATGTAAGATGG
130 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
19347537 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCACACCCCC
195 GTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
* *
19347602 TTAAAGAGCCTTTGAGATTTTACAGGTTCGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * * * ** *
19347667 ACTTTTTTCAAATGGTCACAAAATATTTTACACTTCGATTTTTTAGATGAATTTCATTGTGGATG
325 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * *
19347732 CCAACAAAAATACAAGGATCACCTCTTCCAAGTTTGGGTCCAAAGCTTCTTCCGAAAAAATTTTA
390 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCTTTCGAAAAAATTTTA
* ** *
19347797 AAAAATCCCGGAA-CACAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCAT
454 AAAAATCCC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
** *
19347861 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGC
518 GAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * * *
19347926 ACACAGAAATATGAAGATGTTCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCG-AATC
583 ATGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGCGCTAT-
* * * * * * * *
19347990 CGGTCTCTTTGGTCGGGGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
646 C-GCCTCTCTCGCCGGCGTA--G--TGCCCGCCCGCCCGCCCGCTCATTTCGTCTGTTGGCTTAG
* * * * *
19348055 GCATACGAAGTTCAATT-CCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGTAGGATCAGC
706 GCATACGGAGTTC-ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAG-AGGATCA-C
* * * *
19348119 AGCACACAGAGAGGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTAGCTGGCTGAGCG
768 AGCACGCAGAGAGGGACCCGATCGATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCTGAGCG
** **
19348184 TTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATACG
832 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA-ACG
* *
19348247 GAGTTCATTCTCAGTCTAAGAATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGC
1 GAGTTCATTCCCAGTCTAAG-AT-CG--G---A----C---C---------A---GACCGAGGGT
* * *
19348312 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCTTCGAGGCACCAT-
40 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * * * *
19348376 --C---G--TCG---GAGAACTTGACTGGCGGCATTAGGGTTTCGACGATCGGGGGGGCCAGGGG
105 ACCGGAGCATCGTCAGGGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
* * *
19348431 GGTATGCGCACATGATGTGCGATGGGTGCCGGTGCTTGGCCCTTATAATGGCCCCCTATCCCTCA
170 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
19348496 TCAAAACTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTGCCAGTAG
235 TCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
19348561 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
300 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
* *
19348626 TTTTAGCTGAATGTTTTTT-AGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
365 TTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * ** *
19348690 GCAAAACTCTTTTTGAAAAAATTTTAAAAAATCCTGAATTGCAAAAAGTTTCACAAATCGTGAAA
429 CCAAAACTC-TTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
** *
19348755 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATT
493 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAA-T
* * *
19348820 TTTC-AGCCATAAAAATGGCATTGGCATGCAAAAATATAAAGATGTGCCTAAACCCACCTACCAC
557 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCAC
* * *** *
19348884 CCTATCGATCCACGGCTTGCGC-ATCCGTCTCTCTGGCCGATTTAGT----GCCCGCCTGCCCGC
621 CCTATCGATCCACGGCTTGCGCTAT-CGCCTCTCTCGCCGGCGTAGTGCCCGCCCGCCCGCCCGC
* * * ** *
19348944 TCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGATCGAGG
685 TCATTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
* * *
19349009 GTTGCAGCA-ACG-GGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCC
750 GTTGC-G-ATA-GAGGATC-ACAGCACGCAGAGAGGGACCCGATCGATCCCCGGCTTGCGCATCC
*
19349072 -CCCCTCTGGCCGGCTGAGCGTCCGCACG--CG-TTCGT-GGTT-ACTTAGGGCA-ACGGAGTTC
811 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA-GGCATACGGAGTTC
*
19349130 ATTCCAAGTCTAAGCCAAAC-
875 ATTCCCAGTCTAAG-C-AACG
* * ** * * * *
19349150 GAGTTCATAGCCCAGTCCAAGATCGGACTGGATCGAGGG-TGC-GCAGCACGTACATGGGCCTCC
1 GAGTTCAT-TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGC-TGGG-CTCG
* * *
19349213 GGCATGTGC-GGTGCCGCAATTTTCTTCATCGGGGCACCAT--GC-G-G-A--G--A---AA-CT
63 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCAGGGAACCT
* ** *
19349264 GACCGGCGGCATTGGGGTTCCGACGATC-GGGGTCCCGTGGGGGGTGTGTGC-CATTGATGTGTC
128 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACA-TGATGTG-C
*
19349327 GATGGGTGCTGGTACTCTGGCGCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCA
190 GATGGGTGCTGGTGCT-TGGC-CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * ** * *
19349391 CACCCCCTTAAAGAGCACTTGAGATTTTTACAAGTTTGCTGGTAGGAGCTATTAAAGTGTCTGAA
253 CACCCCCTTAAAGAGCATTTGAGA-TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
** *
19349456 ATGGGGACACTTTTTTCAAATGGTCGGAAAATCGTT-TACA-TTTCGATGGTTTTTAGCTGAAGT
317 ATGGGGACACTTTTTTCAAATGGTCACAAAATC-TTGTACACTTT-GA--GTTTTTAGCTGAATT
* * * * *
19349519 TTTTTGTGCATGCCAA-AAGAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAATTCCTTCC
378 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCG
* * *
19349583 AAAAAAATTTAAAAAAT-CC-AACCGCAAAAAGTTTC-AAAATCATG--AAATACAAAACGAGTC
443 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* ** * * *
19349643 GTCTTG-CATGAAACTTCGCTGTGAAGGCCTAAGGGA-CATTGTAAGAATTTAGAAGCCATAATA
508 GTCTTGCCATGAAACTTCAC-ACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA-A
*
19349706 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACG
571 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACG
* * * ** * *
19349771 GCTTGC-ATATCCTGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCTACCCGTTCGTTTCGTC-GA
635 GCTTGCGCTAT-C-GCCTCTCTCGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCTG-
* * * * * * *
19349834 TTAGCTTTGGCATACAGAGTTCA-TCCACAGTCTAAGATCAGATCGGACCGAAGGTTCCAATAGC
697 TTGGCTTAGGCATACGGAGTTCATTCC-CAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAG-
** * * * *
19349898 AGGATCGGTAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCTCGCCCCTCTGGCT
760 AGGATC-ACAGCACGCAGAGAGGGACCCGATCGATCCCCGGCTTGCGCATC-CGCCCCTCTGGCC
* *
19349963 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGTGTTCATTCCCAGTCTAA
823 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
19350028 GCATACG
888 GCA-ACG
* * * *
19350035 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGCTGCGGCAGCACAAGTTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
19350100 ATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACC-TCACCAGAGCATCGTCAGGGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCAGGGAACCTGAC
* * * *
19350164 CGACGGCATTGGGGTTCCGACGATCGAGGTGGCTGAGAGGGGTGTGCGCACATGATGTGCGATGG
131 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGG
* * * * *
19350229 GTGCTGGTGGTTGGCCCTTATATTGGCCCCTTATCCCTCATTAAACCTCGAGAACTCACA-CCCT
195 GTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
* *
19350293 TTAAAAAGCATTTGAGA-TTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* **
19350357 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTGTTAGCTGAATTTTTTTGCACATG
325 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
19350422 CCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTGCTTTCGAAAAAATTTTT
390 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCGAAAAAATTTTA
* * *
19350487 AAACATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAATTCGTTCTTGCCAT
454 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG-TCTTGCCAT
* * *
19350552 GAAACTTTCACACGAAGGCCTTAAGAGACCATTGTCATGAATTTACAAGTCATTAAAATGGCATT
518 GAAAC-TTCACACGAAGG-CTTAAGGGACCATTGT-ATGAATTTACAAGCCATAAAAATGGCATT
* * * *
19350617 GGGACGCCAGAAATATGAAGATGTGGCTAAA-C-CCT-TCACCCTATCGAATCCACGGCTTGCGC
580 GGCATG-CAGAAATATGAAGATGTGCCTAAACCACCTACCACCCTATCG-ATCCACGGCTTGCGC
* * * * * * *
19350679 TA-C-CCTCT-TCGTCGGCGTACTGTCCGCCTGCCCGCGCACTCATTTCGTCTGTTGGC-T-GGT
643 TATCGCCTCTCTCGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCTGTTGGCTTAGGC
19350739 ATACGGA-TTCCATTCCC-GTCTAAGATCAGACCGGACCGA-GGTTGCGATAGTAGGATCGACAG
708 ATACGGAGTT-CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAG-AGGATC-ACAG
* ** * *
19350801 CA-GCAGAGAGGGACTCGATCGATCCCCGGCCTTGCTTATCCGCCCCTCTAGCCGGTTGAGCGCC
770 CACGCAGAGAGGGACCCGATCGATCCCCGG-CTTGCGCATCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
19350865 CGCAACGCTCGTTCCAGTGGGTTGAACTTAAGGCATATGGAGTTCATT-CCAGTCTAAGCATATG
834 CGC-ACGCTCGTTTC-GTGGGTTG-ACTT-AGGCATACGGAGTTCATTCCCAGTCTAAGCA-ACG
* * * * *
19350929 GAGTTCATTCTCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCACATGTTGGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * ** *
19350994 ATTGTGCTGGTGCCGCATTTTGCTTCGACGGGGCACCATCGTCGGAGCAACGTC-GGAGAACCTG
66 A-TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCAGG-GAACCTG
* * * * *
19351058 ACCAACAGCATTGGGGTTTCGACGATC--GGGGGCCGGGGGGGTGTGCACACCTGATGTGCGATG
129 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
*
19351121 GGTACTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
194 GGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
* *
19351186 CTTAAAGAGCATTTGAGATTTTAGAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
259 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
19351251 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCAT
324 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
19351316 GCCAACAAAAATACAAGGATCACGTCTACCAAG-TTGGGGGCACAAACTCCTTCCGACAAAATTT
389 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACT-CTTTCGAAAAAATTT
* * * *
19351380 TAAAAAATCCCGAACCGTAAAAAGTTTCGAAGATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
452 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
19351445 TGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
517 TGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
19351510 CATGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC-AT
582 CATGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGCGCTAT
* * * * * * * *
19351574 CCCACCTCTCTGGCCGGCATAGTGCCTGCCCGCCTGCTCGCTCGTTTCGT-TAGTTGGCTTAGTC
646 --CGCCTCTCTCGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCT-GTTGGCTTAGGC
* *
19351638 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGC--TACA-G--CA-A-CAC
708 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGAGGATCACAGCAC
* * * *
19351696 GCA-AAAGAGGACTCGA-CTGATCCCCAGCTTGCGCATCCTGCCCTTCTGGCCGGCTGAGCGCCC
773 GCAGAGAG-GGACCCGATC-GATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCTGAGCGCCC
* * * * *
19351759 GTATGCTCATTTTGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCT-----A--
835 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAACG
* * * *
19351811 -AG---------A---T--G---GGACCAGACCGAGGGTTGCGACAGCATACGCTAGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * ** ***
19351858 ATGTGCTGGTGCCGAATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCAAAAAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCAGGGAACCTGAC
* * * *
19351923 CGACGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCAATGGG
131 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
19351988 TGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGACAACTCAAACGCCCT
196 TGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
* * * * *
19352053 TAAAGAGCATTTGAGATTTTACAGGTTTGTTGCTAGTAGCCATTAAAGTGTTTGAAATGTGGTCA
261 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * **
19352118 CTTTTTTCAAATGGTCACAAAAATCTTGTACA-TTTCAAGTTTTTACCTGAATTTTTTTAAGCAT
326 CTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTT-GAGTTTTTAGCTGAATTTTTTTGTGCAT
** * * *
19352182 GTGAACAAAAATACAAGGATGACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTT
389 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCGAAAAAATTTT
* * * * * *
19352247 TAAAAATCTCGAACGGCAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCGAT
453 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
19352312 GAAACTTAACACGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
518 GAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* **
19352377 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCATTGCTTGCGC-ATC
583 ATGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGCGCTAT-
* * * * * *
19352441 CCGCCTCTCTCGCCGACGTAATGCCTGCCCGGCCACCCACTCATTTCGT-TGGTTGGCTTAGGCA
646 -CGCCTCTCTCGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCT-GTTGGCTTAGGCA
* * *
19352505 TACGAAGTTCATTCCCAGTCTAAGATC-GA-AGTAGACCGAGGGTT---A-CGA--A--AC--CA
709 TACGGAGTTCATTCCCAGTCTAAGATCAGACCG--GACCGAGGGTTGCGATAGAGGATCACAGCA
* * *
19352558 TGCAGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCG
772 CGCAGAGAGGGACCCGATCGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCG
*
19352623 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG----TT--CA-T-T------C-
836 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAACG
* * ** *
19352666 -----C--T---AGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAAAACATGCTGGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * *** **
19352721 ATGTGCTGGTTCCGTATTTTTCTTCATTGAGGCACCATCGTAGGAGCATCACCAGGGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCAGGGAACCTGAC
* ** *
19352786 CGACGGCATTTGGGTTCCGACGATCGGGGGGGCTAAGAGGGGTGTGCGCACATGATGTGCGATGG
131 CGACGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGGTGTGCGCACATGATGTGCGATGG
** * * *
19352851 GTGCTGGTGCTTGGCAATTGTATTGGTCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCC
195 GTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
* **
19352916 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGAAATTAAAGTGTCTGAAATGGGGAC
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
19352981 ACTTTTTTCAAATGGT--CAAAATGTTTTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
325 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * * *
19353044 CCAACAAAAGTACAAGGATTATGTTTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTC
390 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTC-GAAAAAATTTTA
* * *
19353109 AAAAATCTCGAACCGTAAAAAGTTTCAAAAAT-GATGAAAAATAGAAAACGAGCCGTCTTGCCAT
454 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCG-TGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
19353173 GAAACTTCACACGAAGGCTTAAGGAACAATTGTATGAACTTACAAGCCATAAAAATGGCATTGGC
518 GAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
19353238 ATGCAGAAATATTAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCCCGGGTTGCGC
583 ATGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGCGC
19353299 ATCCCGCCCC
Statistics
Matches: 4333, Mismatches: 538, Indels: 405
0.82 0.10 0.08
Matches are distributed among these distances:
855 2 0.00
856 1 0.00
857 2 0.00
858 1 0.00
859 2 0.00
860 5 0.00
861 257 0.06
862 3 0.00
863 275 0.06
864 199 0.05
865 180 0.04
866 348 0.08
867 9 0.00
869 1 0.00
871 3 0.00
872 30 0.01
873 109 0.03
874 25 0.01
875 51 0.01
876 42 0.01
877 99 0.02
878 234 0.05
879 49 0.01
880 47 0.01
881 2 0.00
882 2 0.00
883 6 0.00
884 49 0.01
885 66 0.02
886 8 0.00
887 1 0.00
888 1 0.00
889 18 0.00
890 33 0.01
891 114 0.03
892 116 0.03
893 273 0.06
894 152 0.04
895 303 0.07
896 126 0.03
897 87 0.02
898 38 0.01
899 34 0.01
900 53 0.01
901 20 0.00
902 22 0.01
903 73 0.02
904 39 0.01
905 8 0.00
906 4 0.00
908 26 0.01
909 3 0.00
910 116 0.03
911 4 0.00
912 2 0.00
914 1 0.00
915 1 0.00
916 1 0.00
918 19 0.00
919 455 0.11
920 8 0.00
922 3 0.00
924 1 0.00
927 2 0.00
930 69 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCAGGGAACCTGAC
CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCGAAAAAATTTTAAA
AAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAGAAATATGAAGATGTGCCTAAACCACCTACCACCCTATCGATCCACGGCTTGCGCTATCGCCT
CTCTCGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCTGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGAGGATCACAGCACGCAGAGAG
GGACCCGATCGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAACG
Found at i:19354188 original size:26 final size:26
Alignment explanation
Indices: 19354152--19354204 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19354142 GTTGACTTAG
* *
19354152 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19354178 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19354204 G
1 G
19354205 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19355071 original size:26 final size:26
Alignment explanation
Indices: 19355041--19355092 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19355031 TTGACTTAGA
*
19355041 CATACAGAGTTCATTCCCAATCTAAG
1 CATACAGAGATCATTCCCAATCTAAG
* *
19355067 CATACGGAGATCATTCCCAGTCTAAG
1 CATACAGAGATCATTCCCAATCTAAG
19355093 ATCAGACTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (26 bp):
CATACAGAGATCATTCCCAATCTAAG
Found at i:19357566 original size:26 final size:26
Alignment explanation
Indices: 19357537--19357592 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
19357527 TGGGTTGAGT
* *
19357537 TAAGCATACGGAGTTTATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGAC
*
19357563 TAAGCATATGGAGTTCATTCCCAGAC
1 TAAGCATACGGAGTTCATTCCCAGAC
19357589 TAAG
1 TAAG
19357593 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGAC
Found at i:19358729 original size:26 final size:26
Alignment explanation
Indices: 19358693--19358745 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19358683 GGTGACTTAG
19358693 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19358719 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19358745 G
1 G
19358746 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19360274 original size:26 final size:26
Alignment explanation
Indices: 19360245--19360295 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
19360235 TTGACTTAGC
19360245 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCTAGTCTAAG
19360271 CATACGGAGTTCATTCCTAGTCTAA
1 CATACGGAGTTCATTCCTAGTCTAA
19360296 CATCAGACCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCTAGTCTAAG
Found at i:19361730 original size:860 final size:876
Alignment explanation
Indices: 19359860--19362496 Score: 3260
Period size: 912 Copynumber: 3.0 Consensus size: 876
19359850 CAATGGTCAG
* *
19359860 AAAATCGTGAAAAATAGAAAACAAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
19359925 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAAC
* *
19359990 CCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGGCGTAGTGCCCGCC
131 CCACCTACCACCCTATCGATCCA--GC-TGCGCATCCCGTCTCTCTGGCA-GCATAGT----GCC
* * * * *
19360055 CGCCCGCCCGCTCGTTTCGTCTGTTGGCTTAGGAAT-CAGAGTTCATTCCCACTCTAAGATCTGA
188 CGCCCGCCTGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAG-TCATTCCCAGTCTAAGATC-GA
* * * * * *
19360119 CCAGACCGAGGGTTGTGGTAGCAGAATTGGCAGCACGGAGAGGGGGACCCG-GCTAATCCCCGAC
251 CCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATC-GAT-CCCGAC
* * *
19360183 TTGCGCATCCCCCCCTCTGGCAGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGCCAT
314 TTGCGCAT-CGCCCCTCTGG-ACGCTGAGCGCCCGCACGCTCGTTTC-TGGGTTGACTTAG-CAT
* * *
19360248 ACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAACATCAGACCAGACCGAG
375 AC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC-AGTCTAAGATCGGACCA-ACCGAG
* * * *
19360313 GGTT-GCAGCAGCACATATTG-GGCTCAGTCATGTGCTGGTGCCGCATTTTTCTTCGTCGCGGCA
437 GGTTGGGA-CAGCAC--A-TGCGCCT-AGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* *
19360376 CCATCGCCAGAGCATCGTCGGAGAACCTAACCGACGGCTTTGGGGTTCCGACGATC--G-GGGCC
497 CCATCGCCGGAGCATCGTCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGGGAGGGCC
* *
19360438 --GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGTTACTTGG-CCTTATATTGGCCCCCTATC
562 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATC
* * *
19360500 CCTCATCAAATCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCC
627 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
19360565 AGTAGCCATTAAAGTGTCTAAAATTGGGACACTTTTTTCAAAT-G------------GT-CA---
692 AGTAGCCATTAAAGTGTCTAAAATCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
19360613 CG-TTTTTAGCTGAAT-TTTTTAGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT
757 CGATTTTTAGCTGAATGTTTTTA-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
19360676 GGGAACAAAATTCCTTCCAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCA
821 GGGAACAAAATTCCTTCCAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCA
* * *
19360732 AAAGTCGTAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
19360797 ATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAAC
* *
19360862 CCACCTACCACCCTATCGGTCCA-C-G-GCATCCCG-CTCTCTGTACAGCATAGTGCCCGCCCG-
131 CCACCTACCACCCTATCGATCCAGCTGCGCATCCCGTCTCTCTG-GCAGCATAGTGCCCGCCCGC
* * *
19360922 CTGAT-GTTTCGTC-GTT-GCTTAGGCATACGGAG-CATT-CCAGTCTCAG-TCGAACCAAACC-
195 CTGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTCATTCCCAGTCTAAGATCG-ACCAGACCG
* *
19360980 AGGGTTGCGGTAGTAGGATCGGTAG-ACGCAGAGGGGGA-CCGATCGATCCCGACTTGCGCAGT-
259 AGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCGACTTGCGCA-TC
* * * **
19361042 GACCCTCTGGATGCTGAGCG-CCGCAAGCTCGTTTCTGTTTTGACTT-GC-TAC-AGTTCATTCC
323 GCCCCTCTGGACGCTGAGCGCCCGCACGCTCGTTTCTGGGTTGACTTAGCATACGAGTTCATTCC
* * * * *
19361103 CAGTCATAAGCATA-GAAGTT-ATTCCACT-TAAGATTGGATCAACCGGGGGTTGGGACAGCACA
388 CAGTC-TAAGCATACGGAGTTCATTCCAGTCTAAGATCGGACCAACCGAGGGTTGGGACAGCACA
* * *
19361165 TGCGCACTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCC
452 TGCGC-CTAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC
* * *
19361230 GAAGAACCTAACCGACGGCCTTGAGGTTCCGACGATCGGGAGGGCCGGGGGGGTGTGCGCACATG
516 GGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGGTGTGCGCACATG
* *
19361295 ATGT-CGACGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTGTCCCTCATCAAACCTCGAGAA
581 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAA
* *
19361359 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTATCT
646 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
19361424 AAAATCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTGGCAGAATGT
711 AAAATCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TTTTTAGCTGAATGT
* ** * *
19361489 TTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGTCACCAAAACTCCTTCCG
775 TTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGAACAAAATTCCTTCC-
* **
19361554 AAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCA
839 AAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCA
* *
19361592 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
19361657 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATCT-ACAGATGTGCCTAAA
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGA-AGATGTGCCTAAA
* *
19361721 CCTACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACATAGTGCCCGC
130 CCCACCTACCACCCTATCGATCCA--GC-TGCGCATCCCGTCTCTCTGGCAG-CATAGTGCCCGC
19361786 CCGCCCATCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
191 CCG-CC-T--GCTCGTTTCGTCAGTTGGCTTAGGCATACGGAG-TCATTCCCAGTCTAAGATC-G
* * * *
19361851 ACCGGACCGAGGGTTGCAGG-AGCAGGATCGACAGTACGCAGAGGGGGACCCGATCGATCCCCAG
250 ACCAGACCGAGGGTTGC-GGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCGA-
* * * * * *
19361915 CTTGCACATCCCGCCCCTCTGGCCGATTGAGTGCCCGCACGCTTGTTTTATGGGTTGACTTAGGC
313 CTTGCGCAT--CGCCCCTCTGGACG-CTGAGCGCCCGCACGCTCG-TTTCTGGGTTGACTTA-GC
* *
19361980 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCATAGTCTAAGATCGGACCGGACCG
373 ATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC-CAGTCTAAGATCGGACC-AACCG
* * * * * *
19362045 AGGGTTGCGG-CAGCAAATGCTAGGCTTAGGAATGTGCTGTTGTCGCATTTTTTTTCGTCGGGGC
435 AGGGTTG-GGACAGCACATGC---GCCTAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * * *
19362109 ACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAAAGGC
496 ACCATCGCCGGAGCATCGTCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGGGAGGGC
*
19362174 CGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATA
561 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG--------
19362239 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
618 -T---CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
19362304 CAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
679 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATCGGGACACTTTTTTCAAATGGTCACAAA
* * *
19362369 ATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATTCCAACAAAAAGACAAGGATCAC
744 ATCTTGTACACTTCGA-TTTTTAGCTGAATGTTTTTATGCATGCCAACAAAAATACAAGGATCAC
19362434 GTCTACCAAGTTTGGGAACAAAATTCCTTCCAAAAAATTTTAAAAAATCCCGAACCACAAAAA
808 GTCTACCAAGTTTGGGAACAAAATTCCTTCCAAAAAATTTTAAAAAATCCCGAACCACAAAAA
19362497 ATCTTGATCC
Statistics
Matches: 1519, Mismatches: 150, Indels: 153
0.83 0.08 0.08
Matches are distributed among these distances:
834 2 0.00
835 87 0.06
836 2 0.00
837 16 0.01
838 16 0.01
839 20 0.01
840 146 0.10
841 20 0.01
842 8 0.01
843 3 0.00
844 1 0.00
845 1 0.00
846 9 0.01
847 13 0.01
848 9 0.01
849 8 0.01
850 13 0.01
851 6 0.00
852 13 0.01
853 23 0.02
854 11 0.01
855 8 0.01
856 4 0.00
857 11 0.01
858 7 0.00
859 73 0.05
860 185 0.12
861 9 0.01
863 1 0.00
865 14 0.01
866 20 0.01
867 23 0.02
869 2 0.00
870 1 0.00
872 146 0.10
873 8 0.01
874 3 0.00
875 16 0.01
877 4 0.00
878 9 0.01
879 8 0.01
880 20 0.01
881 15 0.01
882 14 0.01
883 7 0.00
885 10 0.01
886 5 0.00
887 9 0.01
888 12 0.01
890 2 0.00
891 3 0.00
892 8 0.01
893 20 0.01
894 4 0.00
895 2 0.00
896 10 0.01
897 19 0.01
898 2 0.00
899 110 0.07
900 33 0.02
909 1 0.00
911 29 0.02
912 205 0.13
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (876 bp):
AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCAGCTGCGCATCCCGTCTCTCTGGCAGCATAGTGCCCGCCCGCC
TGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTCATTCCCAGTCTAAGATCGACCAGACCGAG
GGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCGACTTGCGCATCGCC
CCTCTGGACGCTGAGCGCCCGCACGCTCGTTTCTGGGTTGACTTAGCATACGAGTTCATTCCCAG
TCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGGACCAACCGAGGGTTGGGACAGCACATGCG
CCTAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTAACCGACGGCATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
CGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTAGCTGAATGTTTTTAT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGAACAAAATTCCTTCCAAAAAAT
TTTAAAAAATCCCGAACCACAAAAAGTTTCA
Found at i:19362014 original size:26 final size:26
Alignment explanation
Indices: 19361978--19362030 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19361968 GTTGACTTAG
*
19361978 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
19362004 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
19362030 G
1 G
19362031 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:19362250 original size:13 final size:12
Alignment explanation
Indices: 19362215--19362246 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
19362205 GTGCTGGTAC
*
19362215 TTGGCCCTTATA
1 TTGGCCCCTATA
19362227 TTGGCCCCTATA
1 TTGGCCCCTATA
19362239 TTGGCCCC
1 TTGGCCCC
19362247 CTATCCCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.34, G:0.19, T:0.34
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:19362614 original size:26 final size:26
Alignment explanation
Indices: 19362574--19362626 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19362564 GTTGACTTAG
19362574 GCATACAGAGCTCATTCCCTGTCTAA
1 GCATACAGAGCTCATTCCCTGTCTAA
* *
19362600 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACAGAGCTCATTCCCTGTCTAA
19362626 G
1 G
19362627 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCTGTCTAA
Found at i:19364350 original size:26 final size:26
Alignment explanation
Indices: 19364314--19364366 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19364304 GTTGACTTAG
19364314 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19364340 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19364366 G
1 G
19364367 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19365250 original size:26 final size:25
Alignment explanation
Indices: 19365215--19365266 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
19365205 TTTGACATAG
19365215 GCATAGGAGTTCATTCCCAGTCTAA
1 GCATAGGAGTTCATTCCCAGTCTAA
19365240 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATA-GGAGTTCATTCCCAGTCTAA
19365266 G
1 G
19365267 ATTGAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.19
26 21 0.81
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATAGGAGTTCATTCCCAGTCTAA
Found at i:19366131 original size:26 final size:26
Alignment explanation
Indices: 19366095--19366147 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19366085 GTTGACTTAG
19366095 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19366121 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19366147 G
1 G
19366148 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19367385 original size:889 final size:887
Alignment explanation
Indices: 19363444--19368546 Score: 6264
Period size: 888 Copynumber: 5.7 Consensus size: 887
19363434 GTTGACTTAG
* * ** *
19363444 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCTGACCGAGGGTT-ACAGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGA-CAGCACATGCTGG
* *
19363508 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGACGGGGCACCATCGCCGGAGCGTCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--------CG---CCGGAG
* * * *
19363573 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCCGGGGGGTCGGGGGGGTGTTCGCACATGATAT
119 AACCTGACC-GCCGCATTGGGGTTCCGACGAT-CGGGGGGTCGGGGGGGTGTGCGCACATGATGT
* * * * * **
19363638 GCGATGGGTGCTGGTGCTTGGCCCTTATATTAGCCACTTATCCCTCATCGAACCTCGAGAACTTG
182 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
19363703 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAATGTCTAAAA
247 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19363768 TGGGGACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTTTTTT
312 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
19363833 GTGCATGCC-AAAAAAATACAAGGATCATGGCTACCAAGTTTGTGGCCAAAAATCCTTTCGAAAA
377 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * *
19363897 AA-TTTAAAAAATCTCTAACCGTAAAAAGTTT-TAAAATCGTGAAAAATAGAAAACGAGTCGTCT
442 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
** * *
19363960 TGCCATGAAACTTCACACGAAGGCTTAAGGGAGCAATGTATGAATTTACAAGCCATAAAAATGGC
507 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
19364025 ATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
572 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
* * * * * *
19364090 GCATCCCGCCTCTCTGGCCGGCGTACTG-TCGCCCGCTCGCCCGCTCGTTTCATCGTTTGGCTTA
637 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * *
19364154 GGCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGACTGACGGTTGTGCCAGCAGGATCTG-
702 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATC-GA
* * * * * *
19364218 TAGCACACAAAAGGGGACCCGACCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGC
766 CAGCACGCAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
19364283 GTCGGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
19364340 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGA-TCCAGGGTTGCGGTAGCATATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTTGTGACAGCACATGCTGG
* * * * *
19364404 GCTCAGGCATGTGCTTGTGCCACATTTTTCTTTGTCGGGGCACCATCGTCGAAGCATCGTCGGAA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC---G---C--CGGAG
* * * * *
19364469 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGG-C------CTATGCACACATGATGTG
119 AACCTGACCG-CCGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTG
* ** *
19364527 CGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAATTGGAGAACTCAC
183 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
19364592 TCTCTCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
248 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
19364657 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
313 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
19364722 TGCACGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTT-GTGCCAAAACTCCTTCCGAAAAT
378 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * ** *
19364786 TTTTTTAAAAATCCCAAACTGCAAAAAGTTTTGAAAATCGTGAAAAATTA-AAAATGAGTCGTCT
443 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAA-TAGAAAACGAGTCGTCT
* * * **
19364850 GGCAATGATACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
507 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
19364915 ATTGGCACATAGAAATATGAAGATGT-CCTAAACCCACCAAACA-CCTATCGATCCACGGCTTGC
572 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
* * * * * * *
19364978 GCAT-CCGCCTTTCTGGCTGGCCATAGTGCCCGCCCCGCCCTGTCCACTCATTTCGTCGGTTGGC
637 GCATCCCGTCTCTCTGGCCGG-CGTAGTGCCCG-CCCGCCC-GCCCGCTCGTTTCGTCGGTTGGC
** * * * *
19365042 TTAGCGGCATACGGAGTTCATTCCCAGTCTAAGATTTGACCAGACCGAGGGTAGCGGCA-CCGGA
699 TTA--GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGA
* * ** *
19365106 TCGGCAGCCACACAAAGGGGGACCCGGCCGGATCCCCGACTTGCGCATGTGCCCGCCCCTCTGGC
762 TCGACAG-CACGCAAAGGGGGACCCGATC-GATCCCCGGCTTGCGCA--T-CCCGCCCCTCTGG-
* * * * *
19365171 CCCGACTGAGCACCCGAACCAGCTCGTTT-GTGGCTTTGACATAGGCATA-GGAGTTCATTCCCA
821 -CCGGCTGAGCGCCCGCA-C-GCTCGTTTCGTGG-GTTGACTTAGGCATACGGAGTTCATTCCCA
19365234 GTCTAA
882 GTCTAA
* * * * ** ** *
19365240 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGATTGAAGGTTACGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGACAGCACATGCTGGG
* * * * **
19365305 CTCGGGCATGTGCTGGTGCCGTATTTATCTTCGTCGGGGCACCATCACCGGAGAACTTGACCGGT
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGCC
* * * *
19365370 GACATTAGTGTTCTGGCGATCGAGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC-
131 G-CATTGGGGTTCCGACGATCG-GGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
19365433 --TA----G----TA-CTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
19365487 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATAGGAACACTTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
19365552 TTTCAAATGGTCACAAAAACTTGTACACTTTGAGTTTTTAGGTGAATTTTTTTTTGCATGCCAAA
324 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * * * *
19365617 AAAAATATAAGGATTACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAACTTTTAAAAT
389 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAATTTTAAAAA
* * *
19365682 ATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAC
453 ATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
19365747 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
518 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CA
* *
19365812 -A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACCGCTTGCGCATCTCGT
581 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGT
*
19365875 CTCTCTGGGCGGCGTAGTGCCCGCTTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
646 CTCTCTGGCCGGCGTAGTG-CC-C--GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * * *
19365940 ACAGAGTTCACTCCCAGCCTAAGATCGAACCGGACTGAGGGTTGCGGTAGCAGGATTGGCAGCAT
707 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCAC
* * * * * * * *
19366005 GCGAAGGAGGACCCGATCGATCCCCGACTTACGCGTCCCACCCCTCTGGCCGGTTGAGCGCCCGT
772 GCAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
*
19366070 AAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** **
19366121 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGACAGCACATGCTGGG
* * * *
19366186 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGAGCCATCATCGGAGCTTCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGG-G-CA-C--C--A---TCGCCGGAGA
* *
19366251 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGTCGGGCGGGTTGTGCGCACATGATGTG
120 ACCTGACC-GCCGCATTGGGGTTCCGACGATCGGGGGGTCGGG-GGGGTGTGCGCACATGATGTG
** *
19366316 CGATGGGTGCCAGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
183 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19366381 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
248 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
19366446 GGGGACACTTTGTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTC
313 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19366511 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTTCAAAAAA
378 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * *
19366576 ATCTTGAAAAATCCCAAACCGTAAAATGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCATCTT
443 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
19366641 GCCATGAAACTTCACTTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCA
508 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * **
19366706 TTGGCACATAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTGTCGATCCATAGCTTATG
573 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
* * * * ** * *
19366771 CATCCTGTCTCTCTGGTCGGCGTAGTGCCTGCCTGTTCGCCCGCTTGTTTCGTCAGTTGGCTTAG
638 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
19366836 GCATACGGAGTACATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGTAGTAGGATCGAAA
703 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
19366901 GCACGTAGAGGGGGACCTGATCGATCTCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGGGCAC
768 GCACGCAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
19366966 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCACACGGAGTTCATTCCCAGTCTAA
833 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19367021 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACTGAGAGTTGTGACAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGACAGCACATGCTGGG
* **
19367086 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAATTTGACCAGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACC-GC
* * * *
19367151 CGCATTGGGGTTTCGACGATCGGGTGGTCGGGGGGGGTGTGCACACATGATGTGCGATAGGTGCT
130 CGCATTGGGGTTCCGACGATCGGGGGGTC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
19367216 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTGAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
19367281 GAACATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
19367346 TATCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTAAATTTTTTTGTGCATGCCAAA
324 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
19367411 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
389 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
** * ** *
19367476 T-CCAAACCACAAAAATTTTCAAAAAAAGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACT
454 TCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* ** *
19367540 TCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCAGCATGA-A
519 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CATA
* *
19367604 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
583 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCT
* * *
19367669 CTTTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATAC
648 CTCTGGCCGGCGTAGTGCCCG--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * **
19367734 GAAGTTCATT-CCAATCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCAGGATCGATGGCACGT
709 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACG-
* * * * * *
19367798 C-GAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTTTAGCCGGTTGAGTGCCCGCA
773 CAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*** * ** * * *
19367862 TAATCATTTTATGGGTTGACATAGGCATATGGAGTTCTTTCCCAGTCTAA
838 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
19367912 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCAGACCGAGGGTTGT-AGCAGCACGCGCCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGA-CAGCACATGCTGG
* * * * *
19367976 GCTCGGGCATTTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGTCGGAGAACCTGACCGG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGC
* * *
19368041 CGATATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
130 CG-CATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
19368106 GGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
19368171 GAGCATTTAAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAATTGTCTGAAATGGGGACACTTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * *
19368236 TTTCAAATTGTCACAAAATCATGTACACTTCGAGTTTTTAACTGAATTGTTTTGTGCATGCCAAC
324 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * *
19368301 AAAAGTACAAGGATCATGTCTACCAAATTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
389 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
* * *
19368366 TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACT
454 TCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
19368431 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-CCATAAAAATGGCATT-GC-CATGC
519 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT--
* * * *
19368493 AGAAATATGAAGATGTCCCTAAACCAACCTACCACCCTATTGATCCACGGCTTG
582 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
19368547 TTCACGTGAA
Statistics
Matches: 3646, Mismatches: 464, Indels: 200
0.85 0.11 0.05
Matches are distributed among these distances:
880 21 0.01
881 111 0.03
882 16 0.00
883 1 0.00
884 203 0.06
885 22 0.01
886 137 0.04
887 47 0.01
888 519 0.14
889 443 0.12
890 493 0.14
891 401 0.11
892 84 0.02
893 96 0.03
894 18 0.00
895 8 0.00
896 156 0.04
897 17 0.00
898 1 0.00
899 16 0.00
900 392 0.11
901 21 0.01
902 2 0.00
903 3 0.00
904 206 0.06
905 212 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGCC
GCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
CCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAAGGGG
GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19367916 original size:26 final size:26
Alignment explanation
Indices: 19367886--19367938 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19367876 GTTGACATAG
* *
19367886 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19367912 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19367938 G
1 G
19367939 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19368636 original size:117 final size:117
Alignment explanation
Indices: 19368430--19368663 Score: 468
Period size: 117 Copynumber: 2.0 Consensus size: 117
19368420 GCCAAGAAAC
19368430 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCATAAAAATGGCATTGCCATGCAG
1 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCATAAAAATGGCATTGCCATGCAG
19368495 AAATATGAAGATGTCCCTAAACCAACCTACCACCCTATTGATCCACGGCTTG
66 AAATATGAAGATGTCCCTAAACCAACCTACCACCCTATTGATCCACGGCTTG
19368547 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCATAAAAATGGCATTGCCATGCAG
1 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCATAAAAATGGCATTGCCATGCAG
19368612 AAATATGAAGATGTCCCTAAACCAACCTACCACCCTATTGATCCACGGCTTG
66 AAATATGAAGATGTCCCTAAACCAACCTACCACCCTATTGATCCACGGCTTG
19368664 CGCATCCCGT
Statistics
Matches: 117, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
117 117 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (117 bp):
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCATAAAAATGGCATTGCCATGCAG
AAATATGAAGATGTCCCTAAACCAACCTACCACCCTATTGATCCACGGCTTG
Found at i:19370841 original size:26 final size:26
Alignment explanation
Indices: 19370804--19370856 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19370794 GTTGACTTAG
*
19370804 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19370830 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
19370856 G
1 G
19370857 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Done.