Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 112 of 117
Found at i:19371758 original size:25 final size:26
Alignment explanation
Indices: 19371707--19371758 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19371697 GTTGACTTAG
* *
19371707 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19371733 GCATACAGAGTTCATT-CCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19371758 G
1 G
19371759 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19373966 original size:718 final size:718
Alignment explanation
Indices: 19371733--19374663 Score: 3693
Period size: 718 Copynumber: 4.1 Consensus size: 718
19371723 CCCAGTTTAA
* *
19371733 GCATACAGAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTTCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTT-GGCAGCACATGCTGGG
** * * ** * ** *
19371797 CTCGTGCATGCGTTCCTGCCTCATTTTTCTTCATTGGGGCACCATCGTCGGAGCATCACCGGAGA
65 CTCAAGCATGTGCTGGTGCCGCATTTTTCTTCAGCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
19371862 ACCTGACCGATGGCATT-GGCATTCCGACGATCGGGGGGGCTGGGGG-GTGTGCACACGTGATGT
130 ACCTGACCGACGGCATTAGG-GTTCCGACGATCGGGGGGGCCGGGGGCGTGTGCGCACATGATGT
* * *
19371925 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATTCCTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
19371990 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
19372055 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAACACTTCGAGTTTTTAGCTGAATTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT-ACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
19372120 TGTGCTTGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAAAT-CTTTCG-A
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAA
* * * *
19372183 AAAATTTAAAAAAATCCCGAACATGCAGAAAGTTTTAAAAATCAT-AAAAATTAGAAAACGAGTC
452 AAAATTTTAAAAAATCTCGAAC-TGCAAAAAGTTTCAAAAATCATGAAAAA-TAGAAAACGAGTC
* * * *
19372247 GTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGCGACCATTGTAGGAACTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
19372312 TGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGTG
580 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC--G
* * * * * * *
19372377 CTTGAGCATCCCGTCT-TCCTGGTCGGCGTAGGTGCCCACCCGCCCACCCAGCCTGCCCGCCGTT
643 CTTGCGCAACCCGTCTCT-CTGGCCGGCATA-GTG----CCCGCCCGCCC-GCCCGCCCGCC-TC
*
19372441 GTTCATCAACTCGTTTGGCTTAG
700 GTT--TC-A-TCGGTTGGCTTAG
* * *
19372464 GCATACGGAGTTCATATCCCAGTCTAAAGATCAGACCAGACTGAGGGTTGTGGCCA-CAACATGC
1 GCATACGGAGTTCAT-TCCCAGTCT-AAGATCGGACCGGACCGAGGGTT-TGG-CAGC-ACATGC
* ** *
19372528 TTGGGCTCAGGCAT-TGTCCAGTGCCGCTTCTTTTCTTC-GCTTGGGGCACCA---TC---G--T
61 -TGGGCTCAAGCATGTG-CTGGTGCCGCAT-TTTTCTTCAGC--GGGGCACCATCGTCGGAGCAT
** * * *
19372583 --CCGGAGAACCTGAACCGACAACATTAGGGTTCTGAACGATCGGGGGGGCCGAGGGAGTGGGTG
121 CGCCGGAGAACCTG-ACCGACGGCATTAGGGTTCCG-ACGATCGGGGGGGCCG-GGG-GCGTGTG
* *
19372646 CGTACAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCGGCCCCCCCATCCCTCATCA
182 CGCAC-ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GG-CCCCCTATCCCTCATCA
* * * * *
19372711 GAACCCTCGAGAACTCACACCCCCTTAAAAAGCAAATTGATATTTTACAGGTTTGCTGCCAGTAG
244 -AA-CCTCAAGAACTCACACCCCCTTAAAGAGC-ATTTGAGATTTTATAGGTTTGCTGCCAGTAG
* * * * *
19372776 CCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGCCATAAAATATTGTACTCTTCGAGT
306 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * *
19372841 TTTTAGCTGATTTTTTTTGTGTATGCCGAA-AAAAATGCAAGGATCATGTCTACCAGGTTTGGGG
371 TTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* *
19372905 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
435 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCATGAAA
19372970 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
500 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*** * * *
19373035 TACAAGCCATAAAAATGGCATTGGCACGTGGAAATATGGAGATGGGCCCAAACCCACCTACCACC
565 TACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * *
19373100 CTATCGATCCACGCCTTACGCAACCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC-AC
630 CTATCGATCCACG-CTTGCGCAACCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCC
** * **
19373164 CGTTTCATTTTGTCGGTTGGCTTAG
694 CGCCTCGTTTCATCGGTTGGCTTAG
* * * ** * *
19373189 CCATACGGAGTTCATTCCCAATCTAAGATTGGATTGGATCGAGGG-TTGCTGCTGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTTG--GCAGCACATGCTGG
* ** *
19373253 GCTAAAGCATGTGCTGGTGCCGCATTTTTCTTC-GCCAGGCAGCATCGTCGGAGCATCGCCGGAG
64 GCTCAAGCATGTGCTGGTGCCGCATTTTTCTTCAGCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * *
19373317 AACCTGACCGGCGGCATT-GGAGTTTCGACGATAGGGGGGGCCGGGGG-GTGTGCGCACATGATG
129 AACCTGACCGACGGCATTAGG-GTTCCGACGATCGGGGGGGCCGGGGGCGTGTGCGCACATGATG
* * **
19373380 TGCGATGGGTGGTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * *
19373445 ACACCGCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCATTAGCCATTAAAGTATCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
19373510 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
19373575 TGTGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AA
* * *
19373640 AAAATTTTAAAAAATC-CTGAATTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
452 AAAATTTTAAAAAATCTC-GAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
19373704 TCTTGCCATGACATTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
19373769 GGCATTGGCACACAGAAATATGAAGATATGCCTAAACCCACCCACCACCCTATCGATCCACAGCT
581 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCT
* *
19373834 TGCGCAACCCGTCTCTCTGGCCGGCATAGTGCTCGCCCGTCCGCCCGCCCG-CTCGTTTCATCGG
645 TGCGCAACCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCCTCGTTTCATCGG
19373898 TTGGCTTAG
710 TTGGCTTAG
* * *
19373907 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGAGTTATGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-TGGCAGCACATGCTGGG
* * * * * * *
19373972 CTCGAGCATCTGCTGGTGTCGTATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCGTCGGAGA
65 CTCAAGCATGTGCTGGTGCCGCATTTTTCTTCAGCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
19374037 ACCTGACC-AGTGGCATTAGGGTTCCGGCGATCGGGGGGCCCGGGGGGCGTGTGCGCACATGATG
130 ACCTGACCGA-CGGCATTAGGGTTCCGACGATCGGGGGGGCC-GGGGGCGTGTGCGCACATGATG
* *
19374101 TGTGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
19374166 ACA-CCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
19374230 ATGGGGACACTTTTTTCAAATGGTCA-ACAGATCCTGTACACTTCAAGTTTTTAGCTGAATGTTT
323 ATGGGGACACTTTTTTCAAATGGTCACA-AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
19374294 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGGGACAAAACTCTTTCCAAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
*
19374359 AAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGT
452 AAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
19374424 CTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
19374489 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTT
* * * ** * * **
19374554 GCGCATCCCGCCTCTCTAGCCGGCATAGTGCCCGCCCGCCCGCCCG--TTCAT--TTTGA-CCAT
646 GCGCAACCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCCTCGTTTCATCGGT
19374614 TGGCTTAG
711 TGGCTTAG
* **
19374622 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
19374664 AAGTTGTGAC
Statistics
Matches: 1919, Mismatches: 222, Indels: 134
0.84 0.10 0.06
Matches are distributed among these distances:
715 49 0.03
716 6 0.00
717 157 0.08
718 347 0.18
719 290 0.15
720 209 0.11
721 104 0.05
722 46 0.02
723 24 0.01
724 10 0.01
725 29 0.02
726 18 0.01
727 14 0.01
728 24 0.01
729 16 0.01
730 21 0.01
731 20 0.01
732 13 0.01
733 14 0.01
734 58 0.03
735 14 0.01
736 35 0.02
737 38 0.02
738 257 0.13
739 106 0.06
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (718 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTTGGCAGCACATGCTGGGC
TCAAGCATGTGCTGGTGCCGCATTTTTCTTCAGCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
CCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGCGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCTTGCGCA
ACCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCCTCGTTTCATCGGTTGGCT
TAG
Found at i:19374831 original size:26 final size:26
Alignment explanation
Indices: 19374781--19374831 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19374771 ATTGACTTAG
* *
19374781 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19374807 GCATACGGAGTTCATTCTCAATCTA
1 GCATACGGAGTTCATTCCCAATCTA
19374832 GGATTGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19376427 original size:26 final size:26
Alignment explanation
Indices: 19376397--19376449 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19376387 GTTGACTTAG
*
19376397 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19376423 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19376449 G
1 G
19376450 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19377326 original size:26 final size:26
Alignment explanation
Indices: 19377289--19377341 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19377279 GTTGACTTAC
*
19377289 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19377315 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19377341 G
1 G
19377342 ATCGAACAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19378227 original size:26 final size:26
Alignment explanation
Indices: 19378191--19378243 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19378181 GTTGACTTAG
* *
19378191 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19378217 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19378243 G
1 G
19378244 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19378344 original size:902 final size:897
Alignment explanation
Indices: 19375524--19378975 Score: 4899
Period size: 892 Copynumber: 3.9 Consensus size: 897
19375514 GTTGGCTTAG
* *
19375524 GCATACGAAGTTCATTCCCAGTCTAAGATCCGATTGGACGGAGGGTTGC-AGTAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGAT-CGACTGGACCGAGGGTTGCGA-TAGCACATGCTGG
* * * *
19375588 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCAGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCCGGAGCATCATCGGAG
* * *
19375653 AACCTGACCGACGGCATTAGGGTTCAGGTGATCGGGGGGGCCGGGGGGTGTGCGCGCAAGATGTG
129 AACCTGACCGACGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
19375718 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
19375783 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19375848 GGGGACACTTTTTTCAAATGGTCACAAAAT-TATGTACACTTCAAGTTTTTAGCTGAATTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCT-TGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
19375912 CTGCATGCCAACAAAAATACAAGGATCATGTCTAGTAAGTTTAGGGCCAAAAATCTTTCCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* *
19375977 AATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
19376042 TGCCATGGAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** *
19376107 ATTGGTACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTCGATCCAC-AGCTTG
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTTG
* * * *
19376171 TGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGTCCGCCT-GTTCGTTTCGTCGGTTGGCT
646 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTCGTT-GTTTCATCGGTTGGCT
* * *
19376235 TAGGCATACGGAGTTCATT-CGCAGTCTAAGATCAGACCGAACTAAGGGTTG-AGGCAGCAGGAT
710 TAGGCATACGGAGTTCATTCCG-AGTCTAAGATCAAACCGGACTGAGGGTTGCA-GCAGCAGGAT
* * *
19376298 CGGTAGCACGCAGAGGGGGACTCGATCGATCCTCGGCTTGCGCATCCCACCCCTTTGGCCGGCTG
773 CGGTAGCACGTAGAGGGGGACTCGATTGATCCTCGGCTTGCGCATCCCACCCCTATGGCCGGCTG
* *
19376363 AGCGCCCGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19376423 GCATAC-AGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGATAGCACATGCTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATC-GACTGGACCGAGGGTTGCGATAGCACATGCTGG
* * * * *
19376487 GCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTAGAGGCACCATCTCCGGAGCATCGTCGGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCCGGAGCATCATCGGAG
* * * *
19376552 AACCTGACCGGCGGCATTAAGGTTCCGGTGATC-GGGGGGCCGGGGGGTGTGTGCACATGATGTA
129 AACCTGACCGACGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
19376616 CGATGGGTGCTGGTACTTGGGCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19376681 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTATAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19376746 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ACTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
19376810 TGCATGCCAACAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * *
19376875 ATTTTAAAAAATCTCGAATCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTC
453 ATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
19376940 ACCATGAAACTTCCCGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
19377005 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC-CCCTATCGATCCATGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
* * * *
19377069 CATCCCGTCTCTCTGGCCGACGCAGTACCCGCCCGCCCG-CTC---ATTTCATCGGTTTGCTTAG
648 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTCGTTGTTTCATCGGTTGGCTTAG
* * *** *
19377130 GCATACGGAGTTCATTCTC-AGTCTAAGA-CTGAACCGGACTGAGGCTTATGGCAACAGGATCGG
713 GCATACGGAGTTCATTC-CGAGTCTAAGATC-AAACCGGACTGAGGGTTGCAGCAGCAGGATCGG
* * * * * * * * * * * *
19377193 CAGCATGTAGAGGGGGACCCGACTGATCCCCGGCTTGTGCATCCCGCCTCTCTAGTCGGCTAAGC
776 TAGCACGTAGAGGGGGACTCGATTGATCCTCGGCTTGCGCATCCCACCCCTATGGCCGGCTGAGC
*
19377258 GCCCGCACGCTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAA
841 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
19377315 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACAAGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCG-ACTGGACCGAGGGTTGCGATAGCACATGCTGGG
** **
19377380 CTCAAGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGCACCATCGT-CGGAGCATCATCGGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-TCCGGAGCATCATCGGAG
* * * * *
19377444 AACTTGACTGGCGGCATT-GGGTTCTGGTGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
129 AACCTGACCGACGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
19377508 CGATGGTTGCTGTTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19377573 ACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
19377638 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19377703 TGCATTCCAAAAAAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* ** *
19377768 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
19377833 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
19377898 TTGGCATGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCA
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
19377963 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGTTTGTTTCATCGGTTGGC
648 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CC-T-CG-TTGTTTCATCGGTTGGC
*
19378028 TTAGGCATACGGAGTTCATTCCGAGTCTAAGATCAAACCAGA-TCGAGGGTTGCAGCAGCAGGAT
709 TTAGGCATACGGAGTTCATTCCGAGTCTAAGATCAAACCGGACT-GAGGGTTGCAGCAGCAGGAT
* * * *
19378092 CGGTAGCACGTAGAGGGGGACTCGGTTGATCCTCAGCTTGCGTATCCCACCCCTATGGCCAGCTG
773 CGGTAGCACGTAGAGGGGGACTCGATTGATCCTCGGCTTGCGCATCCCACCCCTATGGCCGGCTG
19378157 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19378217 GCATAC-AGAGTTCATTCCCAATCTAAGATCAGACTGGACTGAGGGTTGCGGTAGTACATACTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATC-GACTGGACCGAGGGTTGCGATAGCACATGCTGG
* * *
19378281 GCTCAGGG-ATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCTCCGGAGCACCATCGGA
64 GCTC-GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCCGGAGCATCATCGGA
* * *** * * *
19378345 GAACTTGACCGACGGCATTACGGTTCCAACGATCGGGGGGGCTGAGGGGTGTGCGCACTTGATGT
128 GAACCTGACCGACGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
19378410 GCGAAGGGTGCTGGTACTTGGCCCTTATATTG-GCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
19378474 CACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAATAGCCATTAATGTGTCTGACA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
19378539 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
19378603 GTGCATGTCAACAAAAATACAAGGATCACGTCTACAAGTTTGGGAG--AAAAATCCTTCC-AAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACAAGTTTGGG-GCCAAAAATCCTTCCGAAAA
* * * *
19378665 ATTTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAAA-CAATGAAAAATAGAAAACTAGTCGT
452 AATTTTAAAAAATCTCGAACCATAAAAAG-TTTCAAAAATC-ATGAAAAATAGAAAACGAGTCGT
* *
19378729 CTTGCCATAAAACTTCACGTGAATGCTTAA-GGACCATTGTATGAATTTACAAGCCAT-AAAAT-
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * * *
19378791 AAATTGGCAT-CAGAAATATGAAGATGTGCCTAAACTCACCTACCATCCC-AACGATACACGGCT
580 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCGATCCACGACT
* * * ** *
19378854 CGCGCTTCCCGTCTCTCTGGCCG-GGTAGTG-CCG-CTTCCCGCCGTCGTCAGTTT-AGTCGGTT
644 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC-TCGT-TGTTTCA-TCGG-T
* **
19378915 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC-GAGGGGTTGCAGCA
705 TGGCTTAGGCATACGGAGTTCATTCCGAGTCTAAGATCAAACCGGACTGA-GGGTTGCAGCA
19378976 ACACATGCTG
Statistics
Matches: 2291, Mismatches: 221, Indels: 90
0.88 0.08 0.03
Matches are distributed among these distances:
889 2 0.00
890 12 0.01
891 71 0.03
892 508 0.22
893 236 0.10
894 63 0.03
895 66 0.03
896 64 0.03
897 230 0.10
898 266 0.12
899 211 0.09
900 11 0.00
901 41 0.02
902 442 0.19
903 68 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGACTGGACCGAGGGTTGCGATAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCCGGAGCATCATCGGAGAA
CCTGACCGACGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATT
TTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTCGTTGTTTCATCGGTTGGCTTAGGCA
TACGGAGTTCATTCCGAGTCTAAGATCAAACCGGACTGAGGGTTGCAGCAGCAGGATCGGTAGCA
CGTAGAGGGGGACTCGATTGATCCTCGGCTTGCGCATCCCACCCCTATGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19380691 original size:26 final size:26
Alignment explanation
Indices: 19380661--19380713 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19380651 GTTAACTTAG
19380661 GCATAC-GACGTTCATTCCCAGTCTAA
1 GCATACGGA-GTTCATTCCCAGTCTAA
*
19380687 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19380713 G
1 G
19380714 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19381587 original size:26 final size:26
Alignment explanation
Indices: 19381551--19381602 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
19381541 GTTGACTTAG
19381551 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19381577 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19381603 TATCTGATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19382321 original size:902 final size:899
Alignment explanation
Indices: 19379427--19384071 Score: 5673
Period size: 902 Copynumber: 5.2 Consensus size: 899
19379417 AAATCGTGAA
*
19379427 AAACTTCGCGTGAAGG-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
1 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
19379491 TGCAGAAAATATGAAGATGTGCCTAAACACACCAACCACCCTATCGAT------C---C-CAT--
66 TGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
19379544 C-TC-C-CTGGCCGACGTAGTGCCCGCCCGCTCA---T-TTCG--TCA---GTTGGCTTAGGCAT
130 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCTGCTCGTTTCATCGGTTGGCTTAGGCAT
* * * * *
19379597 ACGGAGTTCATTCCTATTCTAAGATCAGACCGGATCGAGGGTTGTGGTAGCAGGATCGGTAGCAC
195 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGGCAGCAC
* * * * ** * *
19379662 ACAGAGGGGGACTCAACCGATCCTCAGCTTGCATATCCTGCCCCTCTGGCAGGCTGAGTGCCCGC
260 GCAGAGGGGGAC-CAGCCGATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCTGAGCGCCCGC
* * * * * *
19379727 ACGTTCGTTTCATGGGTTGACTTAGGCATATGGAGTTTATTACCAGTCTAAGCAGACGGAGTTCA
323 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * *
19379792 TTCTCAGTCTAAGATCAGATCGGATCGAA-GGTTGCGACAGCACATGCTGGGCTTC-GACATGTG
388 TTCCCAGTCTAAGATCAGATCAGA-CCAAGGGTTGCGACAGCACATGCTGGGC-TCGGGCATGTG
* * * * * * * **
19379855 CTCGTGCCACAGTTTTCTTCGTCAGGGCACCATCGTCAGAGCCTCACCGGAGAACCTGATCGGAT
451 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACC---T---A-
* * *
19379920 GCTTTAGGGTACCGACGGCATTGGGGTTACGGCGATCAGGGGGGCCGGGGGGCTGTGCGCACATG
509 -----A---T--CGACGGCATTGGGGTTCCGGCGATCAGGGGGGCTGGGGGGGTGTGCGCACATG
* * ** *
19379985 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCAATCATCAAATCTCGAGAA
564 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
19380050 CTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
629 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCT
* * * *
19380115 GAAATGGGGACACATTTTTCAAATGGACACAAAATCTTGTATACTTTGAGTTTTTAGCTGAATTT
694 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
19380180 TTTTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCG
759 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* ** *
19380245 AAAAAATTTTAAAAAATCTCGAACCGTAAAAATTTTTTAAAATCATGAAAAATAGAAAACAAGTC
824 AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
19380310 GTCTTGCCATG
889 GTCTTGCCATG
* * **
19380321 AAACTTCACGTGAAGGATTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGAAA
1 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
19380386 TGCAGAAATATGAAGATGTGCCTAAACCCACCTTCCACCCTATCGGTCCACGGCTTGCGCATCCA
66 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* ** *
19380451 GCCTCTCTAACCGGCGTAGT----GCTCG----CCC-GCTCGTTTCATCGGTTGGCTTAGGCATA
131 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCTGCTCGTTTCATCGGTTGGCTTAGGCATA
* ** * * * *
19380507 CGGAGTTCATTCCCAGTTTAAGATTGGACCAGACCAAGGGTTGCAGTAGTAGGATCGGCAGCACG
196 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGGCAGCACG
* * * *
19380572 TAGAGGGGGACCCGGCCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGATGAGCGCCCGCA
261 CAGAGGGGGA-CCAGCCGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
19380637 CGCTCGTTTCATGGGTTAACTTAGGCATAC-GACGTTCATTCCCAGTCTAAGCATACGGAGTTCA
324 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGA-GTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * * * *
19380701 TTCCCAGTTTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGAGTAAGTGCC
388 TTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
* ** * * * *
19380766 AGTAACGTATTTTTCTTCGTCGGGGCACCAT---C---G---C--CGGAGAACCTAACCGGCGGT
453 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTAATCGACGGC
* * * * * * *
19380820 ATTGGGGTTTCGGGGATCAGGGGGGC-CGGGGGGTGTGCGCACATGATGTGAGCTAGGTGCTAGT
518 ATTGGGGTTCCGGCGATCAGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * *
19380884 AATTGGCCCGTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAG
583 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
19380949 CATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTT
648 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
19381014 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ACTTTTTTGTGCATGCCAACAAA
713 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* *
19381078 AATACAAGGATCACGTCTACCGAGTTTGGGGTCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
778 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
* * * * *
19381143 TGAATCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCCTGCCATG
843 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
19381200 AAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
1 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
19381265 TGCAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATTCC
66 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
19381330 GTCTCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCCCACCC-GCTCGTTTCATCGGTTGGCTTAGG
131 GTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCACCCTGCTCGTTTCATCGGTTGGCTTAGG
** * * *
19381394 CATACGGAGTTCATTCCCAGTCTAAGATCAGAATAGATCGAAGGTTACGGTAGCAGGATCAGCAG
192 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGGCAG
* *
19381459 CACGCAGAGGGGGACCAGTCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGTGCCC
257 CACGCAGAGGGGGACCAGCCGATCCCCGGCTTGCGCATC-CGCCCCTCTGGCCGGCTGAGCGCCC
*
19381524 ACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
321 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * ** * * * *
19381589 CATTCCCAGTCTAATATCTGATTGGACCAAGGGTTGTGACAACACTTGCTGGGCTTGGGCATGTG
386 CATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
* *
19381654 CTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGAAGAACCTAATCGACG
451 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTAATCGACG
* * *
19381719 GCATTAGGGTTCCGGCGAACA-GGGGGCTGGGGGGGTTTGCGCACATGATGTGCGATGGGTGCTG
516 GCATTGGGGTTCCGGCGATCAGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* **
19381783 GTACTTGTCCCTTGCATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
581 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
19381848 ACCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTT
646 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTT
* **
19381913 TTCAAATGGTAACAAAATGATGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
711 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
* * *
19381978 AAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAAT
776 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * *
19382043 CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCTAGCCCTG
841 CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
19382102 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCA
1 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
19382167 TGTAGAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCACGGCTTGCGCATCCC
66 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
19382232 GTCTCTCAGGCCAGTGTAGTGCCCGCCCGCCCACCCGCTTGCTCGTTTCATCGGTTGGCTTAGGC
131 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCA-CC-C-TGCTCGTTTCATCGGTTGGCTTAGGC
** ** * * *
19382297 ATACGGAGTTCATTCCTGGTCTAAGATTGGACCCAG-TTGAGGGTTACGGTAGCAGGATCGACAG
193 ATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAGATCGAGGGTTGCGGTAGCAGGATCGGCAG
** * * * *
19382361 CACATAGA-GGGGACCCGATCGATCCCCGGCTTGCGCATCCGGCCCCTCTAGCCGACTGAGCGCC
257 CACGCAGAGGGGGACCAG-CCGATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCTGAGCGCC
* * * *
19382425 CGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTTACGGAGC
320 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * *
19382490 TCATTCCTAGTCTAAGATCAGATCAGACCGAGGGATGCGGCAGCACATGCTGGGCTCGGGCATAT
385 TCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGT
* * *
19382555 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGATCGAT
450 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTAATCGAC
* * *
19382620 GGCATTGGGGTT-C--CGAT-------GATCGGGGGATGTGCGCACATGATGTGCGATGGGTGCT
515 GGCATTGGGGTTCCGGCGATCAGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* **
19382675 GGCACTTGGCCCTTATATTTTCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
580 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
19382740 GACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGAGGACACTTT
645 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTT
* * * * *
19382805 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGATTTTAGCTGAATGTTTTTGTGCATACCAAC
710 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * * * *
19382870 AAAAATACAAGGATCAAGTCTACCAAATTTGGGGCTAAAACCCCTTCCGAAAAAATTTAAAAAAA
775 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* **
19382935 TCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
840 TCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
19382995 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGA
1 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** *
19383060 CACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
66 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
19383125 GTCTCTCTGGTCGGTGTAGT----GCCCGCCCA--CT--T-GTTTCGTCAGTTGGCTTAGGCATA
131 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCTGCTCGTTTCATCGGTTGGCTTAGGCATA
* * * * * *
19383181 CGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-CTGAGGGTTGTGGCAGCAGGATCGGTAGCAC
196 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCGGTAGCAGGATCGGCAGCAC
* ** ** * * * *
19383245 GCAGAGGGGGACC-GACTGAT-AACGGCTTATGCATCTCACCCATCTGGTCGACTGAGCGCCCGC
260 GCAGAGGGGGACCAG-CCGATCCCCGGCTTGCGCATC-CGCCCCTCTGGCCGGCTGAGCGCCCGC
*
19383308 ACGCTCGTTTC-------G---T--GCAT--TGA---CA-T---AG-----GCATACGGAGTTCA
323 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * *
19383347 TTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGATAGCACATGCTGGGCTGGGGCATGTGCT
388 TTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
** ** * * * * * *
19383412 GGTGCCATATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGAACTTGACCGGCGGC
453 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTAATCGACGGC
* * * *
19383477 ATTGGGGTTCCGACGATCAGGGGGGTTGAGGGGATGTGCGCACATGATGTGCGATGGGTGCTGGT
518 ATTGGGGTTCCGGCGATCAGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * *
19383542 ACTTAGCCCTTATGTTGACCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
583 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
19383607 CATTTGAGATTTTAGAGGTTTGCTGCCATTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTT
648 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
19383672 CAAATGGTCACAAAATCTTGTACACTTCGAGTCTTTAGCTGAATTGTTTTGTGCATGCCAAAAAA
713 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
**
19383737 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTATTTCCGAAAAAATTTTAAAAAATCT
778 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
*
19383802 CAAACCAG-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
843 CGAACC-GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
19383859 AAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATTGGCA
1 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
19383924 TGAAGAAATATGAAGATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCC
66 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* ** *
19383989 GTCTCTCTGGCCGG-ATAGT----GCCCG----CCC-GCTCGTTTGGTCGATTGGCTTAGGCATA
131 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCTGCTCGTTTCATCGGTTGGCTTAGGCATA
19384044 CGGAGTTCATTCCCAGTCTAAGATCAGA
196 CGGAGTTCATTCCCAGTCTAAGATCAGA
19384072 TTGGACTGAG
Statistics
Matches: 3272, Mismatches: 395, Indels: 199
0.85 0.10 0.05
Matches are distributed among these distances:
854 133 0.04
855 1 0.00
857 4 0.00
859 2 0.00
861 1 0.00
862 2 0.00
863 59 0.02
864 460 0.14
866 2 0.00
868 4 0.00
870 1 0.00
873 1 0.00
879 266 0.08
880 232 0.07
881 109 0.03
882 8 0.00
884 1 0.00
885 1 0.00
886 1 0.00
887 4 0.00
889 10 0.00
890 182 0.06
891 95 0.03
892 1 0.00
893 463 0.14
894 53 0.02
895 51 0.02
896 1 0.00
898 18 0.01
899 8 0.00
900 10 0.00
901 228 0.07
902 577 0.18
903 4 0.00
904 6 0.00
905 4 0.00
906 4 0.00
907 1 0.00
908 8 0.00
909 253 0.08
910 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (899 bp):
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCTGCTCGTTTCATCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGGCAGCACG
CAGAGGGGGACCAGCCGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCAGATCAGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGT
GCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTAATCGACGGCATT
GGGGTTCCGGCGATCAGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGA
ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
Found at i:19382493 original size:26 final size:26
Alignment explanation
Indices: 19382456--19382505 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19382446 GACTTAGGCA
*
19382456 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGCTCATTCCCAGTCTAAGCT
*
19382482 TACGGAGCTCATTCCTAGTCTAAG
1 TACGGAGCTCATTCCCAGTCTAAG
19382506 ATCAGATCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGCTCATTCCCAGTCTAAGCT
Found at i:19385051 original size:159 final size:157
Alignment explanation
Indices: 19384715--19385087 Score: 419
Period size: 159 Copynumber: 2.4 Consensus size: 157
19384705 CGCCCACCCG
* * * **
19384715 CTCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
1 CTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
** ** * * *
19384780 GGACAGAAGGTTGCGACAGTAGGATCGACAGCACAGAGGGGCACCCGGTCGATCCCCGGCTTGCA
66 AAACAGAAGGTTAAGACAGTAGGATCGACAGCACAAAGGGGCACCCGCTCGATCCCCGACTTGCA
**
19384845 CAACTCGCCCCTCTGGCCGACTGAGTG
131 CAACTCGCCCCTCTGGCCGACTGAGAC
* *
19384872 CTCGTACGCTCGTTTCGTGGGTTGACTTAGGCCTACGGAGTTCATTCCCAGTCTAAGATCAGACC
1 CTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * ** ** *
19384937 AAACTGAGGGTTAAGGTAGTAGGATCGGTAGCACGCAAAGGGGGACCCGACT-GATCCCCGACTT
66 AAACAGAAGGTTAAGACAGTAGGATCGACAGCA--CAAAGGGGCACCCG-CTCGATCCCCGACTT
* * *
19385001 GCGCATC-CTGCCCCTCTGGTCGACTGAGCAC
128 GCACAACTC-GCCCCTCTGGCCGACTGAG-AC
* * *
19385032 CT-GCATGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
1 CTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
19385088 CATACAGAGT
Statistics
Matches: 180, Mismatches: 31, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
157 81 0.45
158 1 0.01
159 95 0.53
160 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (157 bp):
CTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
AAACAGAAGGTTAAGACAGTAGGATCGACAGCACAAAGGGGCACCCGCTCGATCCCCGACTTGCA
CAACTCGCCCCTCTGGCCGACTGAGAC
Found at i:19385090 original size:26 final size:26
Alignment explanation
Indices: 19385061--19385113 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19385051 GTTGACTTAG
19385061 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19385087 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19385113 G
1 G
19385114 ATCGAACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19386690 original size:26 final size:26
Alignment explanation
Indices: 19386652--19386704 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19386642 GTTGACTTAG
19386652 GCATACGAGGTTCACTCCCAGTCTAA
1 GCATACGAGGTTCACTCCCAGTCTAA
*
19386678 GCATACG-GAGTTCATTCCCAGTCTAA
1 GCATACGAG-GTTCACTCCCAGTCTAA
19386704 G
1 G
19386705 ATCATATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAGGTTCACTCCCAGTCTAA
Found at i:19387543 original size:903 final size:899
Alignment explanation
Indices: 19385777--19390789 Score: 6233
Period size: 902 Copynumber: 5.6 Consensus size: 899
19385767 GTTGGCTTAG
** * * * * *
19385777 GCATACGGAGTTCATTGTCAGT-TAAGATCGGACCAGACCAAGGGTTGTGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *** *
19385841 CTTGGGCATGTGCTTGTGCCACATTTTTCTTTAACGGGGCACCATCGCCGCAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * * ** * * *
19385906 ACTTGACTGGCAACATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGTATGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCTGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
19385970 CGATGGGTACTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19386035 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT
260 CCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
19386100 GGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
19386165 TGCATGCCAA-AAAAATACAAGGATCATGTCTATCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
19386229 ATTTTAAAAAATCCCGAACCGTAAAAGGTTTCCAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * * *
19386294 CCCATCAAACTTCACGTGAAAGCTTAAGGGACGATTGTATGAATTTACAGGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
19386359 TTGGCACACAGAAATATGAACATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGCG
585 TTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * * *
19386424 CATCCCGTCTCTCTGGCCGACGTAGTGCTTGCCCGCCCGCCTGCCCGCTTGTTTTGTCGGATGGC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCT---CGCTCGTTTCGTCGGTTGGC
* * * * * *
19386489 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCGGATTGAGGGTTACAGTAGTAGGATC
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAATGAGGGTTGCGGTAGCAGGATC
* * * ** * *
19386554 GGCAGTACATAGAGGGGGACCTGATCGATCCCCGGCTTGCGCATTTCGCCCCTCTGGTCGGATGA
776 GGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
19386619 GTGTCGGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGGTTCACTCCCAGTCTAA
841 GTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGGTTCATTCCCAGTCTAA
* * * * *
19386678 GCATACGGAGTTCATTCCCAGTCTAAGATCATATCAGACTGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
19386743 CTCGAGCTTGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * *
19386808 ACCTGACCGACGGCATTAGGGTTCTGGCGATTGGGAGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCTGACGATCGGG-GGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
19386873 CAATGGCTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19386938 CCCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTTTGATAT
260 CCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
19387003 -GGGACATTTTTTTCAAATGGCCACAAAATCTTGTACACTTTGAGTTTTTATCTAAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** * * *
19387067 TGCATGCCAACAAAAATACAAGGATCATATCTACCAAGTTTATGGCAAAAAATCCATCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** ** *
19387132 TTTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGGCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
19387197 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * * * *
19387262 TTGGCATGCAAAAATATAAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGTG
585 TTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
19387327 CATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCTTTCGCTCGTTTCATCGGTTGGC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CC--TCGCTCGTTTCGTCGGTTGGC
* * ** * **
19387392 TGAGGCATCCGGAGTTCATTCCCAGTCTAAGATTGGATCGAACTGAGGGTTGCAATAGCAGGATC
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAA-TGAGGGTTGCGGTAGCAGGATC
* * * * * *
19387457 TGCAGCACGTAGAGGGGAACCCAATCGATCCCTGGCTTGCGCATGCCGCCCCTCTGGCTGGCTGA
776 GGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
19387522 GTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-ATAGTTCATTCCCAGTCTCA
841 GTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-GGTTCATTCCCAGTCTAA
* * * * *
19387581 GCTTACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGCTGCGGCAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
19387646 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTAGAGGCGCCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * * *
19387711 ACCTTACCGATGGCATTGGGGTT-TCGACGATCGGAGGGG-CTGGGGGGTGTGTGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCT-GACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGT
*
19387774 GCGATTGG-TGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACC-CTGAGAACT
194 GCGA-TGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-GAGAACT
* * * * *
19387837 CA-CACCCCTTAAAGAGCAGTTGAGATTTCACAGGTTTGCTTCCAGTAGCTATTAAAGTGTCTGA
257 CACCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
19387901 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
** * *
19387966 TTGTGCATGCCAACAAAAATACATTGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCAGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
19388031 AAAATTTTAAAAAATTCTGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
19388096 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * *
19388161 GCATTTGCACGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATGCATGACTT
582 GCATTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ** * * *
19388226 GCGCATACCGTCTCTCTCGTTGGCGTACTGCCCGCCCGCCCG-CTCG-T--TTT-GTCGATTGGC
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTCGCTCGTTTCGTCGGTTGGC
* * ** * *
19388286 TTAGGCATAAGGAGTTCATTCCTAGTCTAAGATCAGATTGGATCGAGGGTTGTGGTAGCAGGATC
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAAT-GAGGGTTGCGGTAGCAGGATC
* * * * * * *
19388351 AGTAGAACGTAGAGGGGGACCCGTTCGATCCCCGGCTTGAGCATCCCACCGCTCTGGCC-GCTGA
776 GGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
19388415 GCGCCCGCACAG-TCGTTTCGTGGGTTGACTTAGGCATACG-GAGTTCATTCCTAGTCTAA
841 GTGCCCGCAC-GCTCGTTTCGTGGGTTGACTTAGGCATACGAG-GTTCATTCCCAGTCTAA
* *
19388474 GCATACGGAGTTCTTTCCCAGTCTAAGATCAGACC-GAACCGAGGGATGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * * *
19388538 GTTTGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCAGGGCACCATCGCCGGAGCATCGCCAGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAG
* * * * * * *
19388603 AACCTAACCGGCGGCATTTGGGTT-TCGACTACCGGGGGGGTCGGGGGGGTGTGCGCACGT-ATG
130 AACCTGACCGACGGCATTGGGGTTCT-GACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATG
* *
19388666 TACGATGG--GCATTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAAC
193 TGCGATGGCTGC--TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
** *
19388729 TCATGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTG
256 TCACCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
19388794 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* ** * *
19388859 TTTGGGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGCACCAACACTCCTTTCGA
386 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * ** * *
19388924 AAAAATTTTAAAACATCCCGAACCGTAAAAAGTTTGAAAAATTGTCAAAAATAAAAAACGAGTCG
451 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
19388989 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** *
19389053 GGCATTAACACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC--CT
581 GGCATTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
19389116 TGCGTATCCTGTCTCT-TGGCCGGCTTAGTGCCCACCCGTCCGCCCACCCATCCGCTCGTTTCGT
646 TGCGCATCCCGTCTCTCTGGCCGACGTAGTG----CCCGCCCGCCC-GCC-T-CGCTCGTTTCGT
* * * *
19389180 CAGTAGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAAATTGAGGGTTGCGGCA
704 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAA-TGAGGGTTGCGGTA
* * * * **
19389244 GCAAGATCGGCCGCACGCAGAAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
768 GCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * *
19389309 CCGACTGAGCGCCCGCACGGTCGTTTCGTGGGTTGACTTAGGCATATG-GAGTTCATTCCCAGTC
833 CCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAG-GTTCATTCCCAGTC
19389373 TAA
897 TAA
* * * * *
19389376 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * ** * * *
19389441 CTCGGGCATGTGTTGGTACCGTATTTTTCTTTGCCGGGAAACCATCACCGGGGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * * *
19389506 ACCTGACAGGA-GGCATTGAGGTGTC-GACAATCGAGGGGGCCGAGTGGGGTGTGCGCACATGAT
131 ACCTGAC-CGACGGCATTGGGGT-TCTGACGATCG-GGGGGCCG-GGGGGGTGTGCGCACATGAT
* * * * *
19389569 GCGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACT
192 GTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * * *
19389634 CACACCCCCTTAAAAAGCTTTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTTTGA
257 CACCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
19389699 AATGGGGACACTTTTTTTAAATGGTTACAAAATCTTGTACTCTTCGAGGTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
19389764 TTGTGCATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTTGGGCCAAAACTCCTTTCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
19389829 AAACTTTTAAAAATTCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
19389894 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
19389959 GCATT-GCACACACAAATATGAAGATTTGCCTCAACCCACCTACCACGCTATCGATCCATGGCTT
582 GCATTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ** *
19390023 GCGCATACTGTCTCTCTGGCCGAC-----GCCCGCCCATCCG--T---TCGTTCCGTCGGTTGGC
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTCGCTCGTTTCGTCGGTTGGC
*
19390078 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AGATGAAGGGTTGCGGTAGTAGGAT
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ATG-AGGGTTGCGGTAGCAGGAT
* * * * * *
19390142 CGG-TGACACGTAGAGGGGGACCC-AGCTGATCCCCGGCTTGTGCATCCTGCCCCTTTGGCCGAC
775 CGGCAG-CACGTAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
19390205 TGAGTGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACAAAGTTCATTCCTAGTCTAA
838 TGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGGTTCATTCCCAGTCTAA
* * * * * * *
19390267 GCATATGGAGTTC-TTTCCAGTCTAAGATCAGACCGGACCGAGGGATGTGGCAGCACAAGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
19390331 CTTGGGCATGTGCTGGAGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG-A--ACC---TA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * * * *
19390390 ACC-G---G-CGGCATTGGGGTTCCGGCTATCGGGGGGTCGGGGGGGTGTGCGCACAT-ATGTAC
131 ACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* **
19390449 GATGGGC-GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTAAGAACTCAC
196 GAT-GGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19390513 GCCCCCC-AAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGACATTAAAGTGTCTGAAA
260 -CCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
19390577 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
19390642 GAGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCC-AAAA
389 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** **
19390706 AATTTTTTAAAAATATCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
454 AA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
19390771 TTGCCATGAAATTTCACGT
518 TTGCCATGAAACTTCACGT
19390790 AAAAATGGCA
Statistics
Matches: 3568, Mismatches: 480, Indels: 153
0.85 0.11 0.04
Matches are distributed among these distances:
875 5 0.00
876 294 0.08
877 23 0.01
878 9 0.00
879 17 0.00
883 1 0.00
884 4 0.00
887 2 0.00
889 1 0.00
890 131 0.04
891 169 0.05
892 4 0.00
893 314 0.09
894 426 0.12
895 3 0.00
896 1 0.00
897 2 0.00
898 13 0.00
899 1 0.00
900 1 0.00
901 167 0.05
902 813 0.23
903 733 0.21
904 397 0.11
905 11 0.00
906 19 0.01
907 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACC
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATGAGGGTTGCGGTAGCAGGATCGGCAG
CACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGGTTCATTCCCAGTCTAA
Found at i:19388484 original size:26 final size:26
Alignment explanation
Indices: 19388448--19388500 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19388438 GTTGACTTAG
*
19388448 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19388474 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19388500 G
1 G
19388501 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19389386 original size:26 final size:26
Alignment explanation
Indices: 19389350--19389402 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19389340 GTTGACTTAG
*
19389350 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19389376 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19389402 G
1 G
19389403 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19390962 original size:26 final size:26
Alignment explanation
Indices: 19390926--19390978 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19390916 GTTGGCTTAG
*
19390926 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
*
19390952 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
19390978 G
1 G
19390979 ATCGGGCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAATCTAA
Found at i:19391866 original size:26 final size:26
Alignment explanation
Indices: 19391830--19391882 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19391820 GTTGACGTAG
*
19391830 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19391856 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19391882 G
1 G
19391883 ATCGGTCTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19393157 original size:880 final size:882
Alignment explanation
Indices: 19390915--19393535 Score: 3518
Period size: 880 Copynumber: 2.9 Consensus size: 882
19390905 TCATTTTGTC
* * * *
19390915 GGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTAATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * **
19390980 TCGGGCCAGACCGATGGTTGCGGCAGCACATGCTCGGCTCGAGCATGTGCTGGTGTCATATTTTT
66 TC-GGTCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTT
19391045 CTTCGCCAGGGCACCATTGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAT
130 CTT--CC--GG--CC---GTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAT
19391110 GATCGAGGGGGCCGGGGGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
186 GATCG-GGGGGCC-GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
19391175 ATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTATAGAGCATTTGAGATTTT
248 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
19391240 ACAAGTTTGCTGCCAGTAGCCATGACAGTGTCTAAAATGGGGATACTTTTTTCAAATGGTCAC-A
313 ACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
19391304 AATCTTGTACACTTCGAGTTTTTAGTCGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
378 AATCTTGTACACTTCGAGTTTTTAGT-GAATTTTTTTATGCATGCCAAGAAAAATACAAGGATCA
* * * * *
19391369 CGTCTACTAAGTTTAGGTCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCTGAACCGAAAAAA
442 CGTCTACCAAGTTTGGGGCCAAAACTCC-ATCAAAAAAATTTTAAAAAAT-CTGAACCGTAAAAA
* ** * *
19391434 GATTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAG
505 GTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
*** * *
19391499 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATATCC
570 GGGACCATTGTATGAATTTACAAG-CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTAC
* *
19391564 CTAAACCCACCTACCACCCTATCGATCTACAGCTTGCGCAACCCGTCTCTCTGGCCGGCGTACTG
634 CTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G
*
19391629 CCTGCCCGCCTGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
697 --TGCCCGCC-GC-CGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * ** * * *
19391694 TAAGATTGGACCAGATCGAGGGTTGCGGCAATAGGATCGGCAACACGCAGAGGGGGACCCGGTCG
758 TAAGATTGGACCAGACCGAGGGTTGCAGCAGCAGGATCGGTAGCACACAGAGGGGGACCCGGTCG
** * * * *
19391759 ATCCCCGGCTTGCAGATCCCGCCCCTTTGGCCAGCTGAGCGCCCGTACGCTCGTTTCGTG
823 ATCCCCAACTTGCACATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATG
* * *
19391819 GGTTGACGTAGGCATACAGAGTTCATTCCCT-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATT-CCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * **
19391883 ATCGGTCTGGACCGAGGGTTACGACAGCACATGCTAGGCTTAGGCATGTGCTGGTGCCGCATTTT
65 ATCGGTC-GGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * * * *
19391948 TCTTCGTCGGGCACCATCGTCGGAGAATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
129 TCTTC--C-GG---C--CGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAT
* *
19392013 GATCGGGGGGCCGGGGGGTGTGCGCACGTGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATT
186 GATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
19392078 GGCCCCCCATCCCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACA
251 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* ** * *
19392143 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGTAATGGGGACACTTATTTCATATGGTCACAAAAT
316 AGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
*
19392208 CTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTATGCATGCCAAGAAAAATACAAGGATCGCGT
381 CTTGTACACTTCGAGTTTTTAG-TGAATTTTTTTATGCATGCCAAGAAAAATACAAGGATCACGT
* * * *
19392273 CTACCAAGTTTGGGGCCAAAAATCCATCAAAAAAATTTTTTAAAAGTTTGGAACCGTAAAAAGTT
445 CTACCAAGTTTGGGGCCAAAACTCCATCAAAAAAA-TTTTAAAAAATCT-GAACCGTAAAAAGTT
* * *
19392338 TTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAGGAAACTTCACGTGAAGGCTTAATGG
508 TTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
19392403 ACCATTGAATGAATTTACAA-CTACAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTA
573 ACCATTGTATGAATTTACAAGC-ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTA
* * *
19392467 AACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCC
637 AACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* * * *
19392532 G-C-CCGCCCGCTCATTTCGTCGATTGCCTTAGGCATACGGAGTTCATTCTCAGTCTAGGATTGG
702 GCCGCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
* * * *
19392595 ACCAGACCGAGGGTTACAGCAGCAGGTTCGGTAGCACATAGAGGGGGACCCGGTTGATCCCCAAC
767 ACCAGACCGAGGGTTGCAGCAGCAGGATCGGTAGCACACAGAGGGGGACCCGGTCGATCCCCAAC
* * *
19392660 TTGCACATCCCGCCCCTCTGGCCTGTTGAGCGCCCGCACGTTCGTTTCATG
832 TTGCACATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATG
* * *
19392711 GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAACGTACGGAGTTCATTCCCAGTCTAACA
1 GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
19392776 TCGGATCGGACCGAGGGTTGCGGTAGGACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
66 TCGG-TCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* *
19392841 C-TCC-G-C-T-GGAGCATCGCCGGAGAACCTGACCGACAGCATTGGGTTTCCGATGATCGGGAG
130 CTTCCGGCCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGG-G
* *
19392901 GGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCT
194 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
19392966 ATCCCTAATCAAACCTTGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAAGTTTGCT
259 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCT
* *
19393031 GCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATCGTCACAAAATCCTGTACA
324 GCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
19393096 CTTAGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAGAAAAATACAAGGATCATGTCTACCAAG
389 CTTCGAGTTTTTAG-TGAATTTTTTTATGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAG
** ** *
19393161 TTTGGGGCCAAAACTCCATTTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAATTTTTGAAAAT
453 TTTGGGGCCAAAACTCCA-TCAAAAAAATTTTAAAAAAT-CTGAACCGTAAAAAGTTTTGAAAAT
* *
19393226 CATGCAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
516 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
19393291 TTCAATTTACAAGGCATAAAAATGCCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACC
581 ATGAATTTACAA-GCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACC
* *
19393356 TACCACCCTATCGATCCACAGCTTGCGCATCCTGTCTCTCTGGCCGGCATAGTGCCCGCCTGCCC
645 TACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-G-CC
** **
19393421 GGCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGAC
705 -GCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
** *
19393486 TGGACCGAGGGTTGCAGCAGCAAGATCGGTAAG-ACACAGAGGGGGACCCG
769 CAGACCGAGGGTTGCAGCAGCAGGATCGGT-AGCACACAGAGGGGGACCCG
19393536 ACTGATCGTC
Statistics
Matches: 1511, Mismatches: 178, Indels: 71
0.86 0.10 0.04
Matches are distributed among these distances:
879 44 0.03
880 356 0.24
881 105 0.07
882 1 0.00
883 1 0.00
884 2 0.00
885 1 0.00
887 2 0.00
889 97 0.06
890 2 0.00
891 5 0.00
892 262 0.17
893 3 0.00
895 1 0.00
896 6 0.00
898 1 0.00
899 1 0.00
900 257 0.17
901 190 0.13
902 9 0.01
903 53 0.04
904 109 0.07
905 2 0.00
906 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (882 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCGGTCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
TTCCGGCCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGG
CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGC
CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGTGAATTTTTTTATGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCATCAAAAAAATTTTAAAAAATCTGAACCGTAAAAAGTTTTGAAAATCATGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCAC
CCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCCGCTC
ATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGT
TGCAGCAGCAGGATCGGTAGCACACAGAGGGGGACCCGGTCGATCCCCAACTTGCACATCCCGCC
CCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATG
Found at i:19394246 original size:710 final size:712
Alignment explanation
Indices: 19392860--19394209 Score: 2028
Period size: 710 Copynumber: 1.9 Consensus size: 712
19392850 AGCATCGCCG
* * * *
19392860 GAGAACCTGACCGACAGCATTGGGTTTCCGATGATCGGGAGGGTCGGGGGGTGTGCGCACATGAT
1 GAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGTGTACGCACATGAT
* *
19392925 GTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTAATCAAACCTTGAGAACT
66 GTGCAATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCCATCCCTAATCAAACCTTGAGAACT
*
19392990 CACACCCCCTTAAAGAGAATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
131 CACACCCCCTTAAAGAGAATTTGAGATTTTACAAGTTTGCTGCCAGTACCCATTAAAGTGTCTAA
* *
19393055 AATGGGGACACTTTTTTCAAATCGTCACAAAATCCTGTACACTTAGAGTTTTTAGCTGAATTTTT
196 AATAGGGACACTTTTTTCAAATCGTCACAAAATCCTGTACACTTAGAGTTTTTAGCTGAAATTTT
** * **
19393120 TTTTGCATGCCAAGAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATTTGAA
261 TTGCGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCATTTGAA
* * ** * *
19393185 AAAATTTTAAAAAATCCCAAACCGTAAAAATTTTTGAAAATCATGCAAAATAGAAAACGAGTCGT
326 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGT
* * * * *
19393250 CTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTCAATTTACAAGGCATAAAAATG
391 CTTGCCATAAAACTTCACGTGAAAGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATG
**
19393315 CCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTT
456 CCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTT
* * * *
19393380 GCGCATCCTGTCTCTCTGGCCGGCATAGTGCCCGCCTGCCCGGCCGCCCGCTCATTTCGTCGGTT
521 ACGCATCCCGTCTCTCTGGCCGGCATAGTACCCGCCCGCCCGGCCGCCCGCTCATTTCGTCGGTT
*
19393445 GGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAAG
586 GACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAAG
19393510 ATCGGTAAGACACAGAGGGGGACCCGACTGATCGTCGGCTTGCCATCGTCGGAGAATCGTCA
651 ATCGGTAAGACACAGAGGGGGACCCGACTGATCGTCGGCTTGCCATCGTCGGAGAATCGTCA
* * *
19393572 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGGTGTACGCACGTGA
1 GAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGAGGGCC-GGGGGGTGTACGCACATGA
* *
19393636 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTTGAGAAC
65 TGTGCAATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCCATCCCTAATCAAACCTTGAGAAC
* * *
19393701 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTG
130 TCACACCCCCTTAAAGAGAATTTGAGATTTTACAAGTTTGCTGCCAGTACCCATTAAAGTGTCTA
* * * *
19393766 AAATAGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAATTT
195 AAATAGGGACACTTTTTTCAAATCGTCACAAAATCCTGTACACTTAGAGTTTTTAGCTGAAATTT
*
19393831 TTTGCGCATGCCAACAAAAATACAAGGATCACATCTACCAAG-TT-GGGCCAAAACT-CGTTTCG
260 TTTGCGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCATTT-G
** * *
19393893 AAAAAATTTTAAAAAATCCCGTACTGCAAAAAGTTTCAAAAATCGTGAAAAACAGAAAACGAGTC
324 AAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTC
*
19393958 GTCTTGCCATAAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
389 GTCTTGCCATAAAACTTCACGTGAAAGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAA
* * * *
19394023 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
454 TGCCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGC
* ** * *
19394088 TTACGCATCCCGTCTCTCTGGTCGGTGTAGTACCCGCCCGTCC-GCTCGCCCGCTCATTTTGTCG
519 TTACGCATCCCGTCTCTCTGGCCGGCATAGTACCCGCCCGCCCGGC-CGCCCGCTCATTTCGTCG
* ** * * * *
19394152 GTTTACTTAGGCATACGGAGTTCATTCTCAGTTTAAGAT-AGGATTGGATCGAGGGTTG
583 GTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCA-GACTGGACCGAGGGTTG
19394210 TTGTAGTAGG
Statistics
Matches: 568, Mismatches: 66, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
709 7 0.01
710 285 0.50
711 6 0.01
712 270 0.48
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.26
Consensus pattern (712 bp):
GAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGTGTACGCACATGAT
GTGCAATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCCATCCCTAATCAAACCTTGAGAACT
CACACCCCCTTAAAGAGAATTTGAGATTTTACAAGTTTGCTGCCAGTACCCATTAAAGTGTCTAA
AATAGGGACACTTTTTTCAAATCGTCACAAAATCCTGTACACTTAGAGTTTTTAGCTGAAATTTT
TTGCGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCATTTGAA
AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGT
CTTGCCATAAAACTTCACGTGAAAGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATG
CCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTT
ACGCATCCCGTCTCTCTGGCCGGCATAGTACCCGCCCGCCCGGCCGCCCGCTCATTTCGTCGGTT
GACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAAG
ATCGGTAAGACACAGAGGGGGACCCGACTGATCGTCGGCTTGCCATCGTCGGAGAATCGTCA
Found at i:19395253 original size:26 final size:26
Alignment explanation
Indices: 19395217--19395266 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19395207 GTTGACTTAG
19395217 GCATACGGAGTTCATTCCCAGTCTGA
1 GCATACGGAGTTCATTCCCAGTCTGA
*
19395243 GCATATGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
19395267 TACATCGGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTGA
Found at i:19396088 original size:26 final size:26
Alignment explanation
Indices: 19396058--19396110 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19396048 GTTGACTTAG
19396058 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19396084 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19396110 G
1 G
19396111 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19396213 original size:841 final size:841
Alignment explanation
Indices: 19394547--19396227 Score: 2482
Period size: 841 Copynumber: 2.0 Consensus size: 841
19394537 TGTGATGGGC
*
19394547 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
1 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
19394612 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGAAATAGGGACAT
66 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGAAATAGGGACAC
* *
19394677 TTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGCTAAAATTTTTTGTGCATGCC
131 TTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTCTAGCTAAAATTTTTTGTGCAAGCC
* * ** * *
19394742 AACAAAAATACAAGGATCACATCTACCAAGTTTGGGGTAAAACTCGTTTCGAAAAAATTTTAAAA
196 AAAAAAAATACAAGGATCACATCTAACAAGTTTGGGGTAAAACTCCATCCGAAAAAATTTAAAAA
** * *
19394807 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
261 AATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTACCATGAAA
*
19394872 CTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATAT
326 CTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATAC
*
19394937 AAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCTGTC
391 AAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTC
* * * * *
19395002 TCTTTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATTCGGA
456 TCTCTGGCCGACATAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGA
*
19395067 GTTCATTCCCAGTCTAAGATCAAACTAGACCGAGGTTTACGGTAGCAGGATCAGCAGAACACAGA
521 GTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGTTTACGGTAGCAGGATCAGCAGAACACAGA
* * **
19395132 GGGGGACCCGGGCGATCCTCGGCTTGCGCATCCCGTCCCTCTGGTCGGCTAAGCGCCCGCACGTT
586 GGGGGACCCGGGCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACACT
** * * *
19395197 TGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTGAGCATATGGAGTTCATTCCC
651 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * *
19395262 AGTCTTACATCGGATCAGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGT
716 AGTCTAACATCGGATCAGATCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGC
* * * * *
19395327 CGTATTTTTCTTCGTCGGGGTACCATCATCGGAGCATCACCGGAGAACCTGA-CGATGGCT
781 CGCATTTTGCTTCCTCGGGGCACCATCATCGAAGCATCACCGGAGAACCTGACCGATGGCT
*
19395387 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTT
1 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
19395452 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGGAATGGGGACAC
66 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGAAATAGGGACAC
* * * *
19395517 TTTTTTCAAATGGTCACAAAATCTTGTACA-TTTCTAGTTTCTAGCTTAATTTTTTTGTGCAAGG
131 TTTTTTCAAATGGTCACAAAATCTTGTACAGTTT-GAGTTTCTAGCTAAAATTTTTTGTGCAAGC
* *
19395581 CAAAAAAAATACGAGGATCGCATCTAACAAGTTTGGGGCTAAAACTCCATCCGAAAAAATTTAAA
195 CAAAAAAAATACAAGGATCACATCTAACAAGTTTGGGG-TAAAACTCCATCCGAAAAAATTTAAA
** * *
19395646 AAAATCTTGAACCACAAAAAGCTTT-GAAAATCGTGAAAAATAAAAAACGAGTCGTCTTACCATG
259 AAAATCCCGAACCACAAAAAG-TTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTACCATG
* *
19395710 AAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
323 AAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
19395775 TGCAGAAATATGAAGATGTGCCTAAACGCACCTACCACTCTATTGATCCACGGCTTGCGCATCCC
388 TACAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCC
*
19395840 GTCTCTCTGGCC-AGCATAGTGCCCGCCCGCCCACCCGTTCGTTTCGTC-AGTTGGCTTAGGCAT
453 GTCTCTCTGGCCGA-CATAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGA-TTGGCTTAGGCAT
*** * * *
19395903 ACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGTTTACGGTAGCAGGATC-GACAGTA
516 ACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGTTTACGGTAGCAGGATCAG-CAGAA
* *
19395967 CACAGAGGGGGA-CCGGGTCGAT-CTCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
580 CACAGAGGGGGACCCGGG-CGATCCT-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCC
*
19396030 TGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
643 CGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * **
19396095 TCATTCCCAGTCTAAGATCGGA-CTGGATTGAGGGTTGCGGTGGCACATGCTGGGCTCAGGCATG
708 TCATTCCCAGTCTAACATCGGATC-AGATCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATG
* * *
19396159 TGTTGGTGCCGCATTTTGCTTCACT-GGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCG
772 TGCTGGTGCCGCATTTTGCTTC-CTCGGGGCACCATCATCGAAGCATCACCGGAGAACCTGACCG
19396223 ATGGC
836 ATGGC
19396228 ATTGGGGTTC
Statistics
Matches: 750, Mismatches: 80, Indels: 20
0.88 0.09 0.02
Matches are distributed among these distances:
839 3 0.00
840 222 0.30
841 514 0.69
842 11 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (841 bp):
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGAAATAGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTCTAGCTAAAATTTTTTGTGCAAGCC
AAAAAAAATACAAGGATCACATCTAACAAGTTTGGGGTAAAACTCCATCCGAAAAAATTTAAAAA
AATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTACCATGAAA
CTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATAC
AAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGACATAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGTTTACGGTAGCAGGATCAGCAGAACACAGA
GGGGGACCCGGGCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACACT
CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
AGTCTAACATCGGATCAGATCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGC
CGCATTTTGCTTCCTCGGGGCACCATCATCGAAGCATCACCGGAGAACCTGACCGATGGCT
Found at i:19397797 original size:26 final size:26
Alignment explanation
Indices: 19397767--19397818 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19397757 GTTGATTTAG
* *
19397767 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGGTCATTCCCAGTCTAA
19397793 GCATACAAAGGTCATTCCCAGTCTAA
1 GCATACAAAGGTCATTCCCAGTCTAA
19397819 TATCGGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGGTCATTCCCAGTCTAA
Found at i:19398699 original size:26 final size:26
Alignment explanation
Indices: 19398663--19398712 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
19398653 GACTTAGGCA
19398663 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
19398689 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
19398713 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:19399588 original size:26 final size:26
Alignment explanation
Indices: 19399552--19399604 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19399542 GTTGACTTAG
*
19399552 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19399578 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19399604 G
1 G
19399605 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19400474 original size:25 final size:26
Alignment explanation
Indices: 19400440--19400491 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
19400430 GTTGACTTAG
19400440 GCATACGGAGTTCATTCC-AGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
19400465 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
19400491 G
1 G
19400492 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 18 0.69
26 8 0.31
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:19401371 original size:26 final size:26
Alignment explanation
Indices: 19401335--19401387 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19401325 GTTGACTTAG
19401335 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19401361 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19401387 G
1 G
19401388 AACAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19401779 original size:895 final size:893
Alignment explanation
Indices: 19397670--19403029 Score: 7100
Period size: 904 Copynumber: 6.0 Consensus size: 893
19397660 AGAGGGTTGT
* ** *
19397670 GACAGCACGCAGAAGGGGACCCGACCGATCCCAACTTGCGCATCCTGCCCCGCTGGCCGACTGAG
1 GACAGCACGCAGAGGGGGACCCGACCGATCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAG
* * * *
19397735 CGCCCGCACGCTCGTTTCATGGGTTGATTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACA
66 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * * * * * * *
19397800 AAGGTCATTCCCAGTCTAATATCGGACCGAACCAAGGGTTACGGCCA-CACATGTTGGGATTGGG
131 GAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGC-GACAGCACATGCTGGGCTCGGG
* * *
19397864 CATGTCCTGGTGCCGTATTTTTCTTCTCCGGGGCACCATCGTAGGAGCATCGTCGGAGAACCTGA
195 CATGTGCTGGTGCCGTATTTTTCTTCT-CGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * * * * *
19397929 CCGACGACATT-GTGGTTCTGGCGAT-GGGGGGGTCGGGGGGTGTGTGCACATGATGTGCAATGG
259 CCGGCGGCATTAG-GGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* *
19397992 TTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCC
323 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
19398056 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
388 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
19398121 ACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
453 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * * *
19398186 CCAACAAAAATACAATGATCATGTCT----A---T-CGGCCAAAAATCCTTCTGGAAAAATTTTA
518 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * *
19398243 AAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATG
583 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
19398308 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCA
648 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
19398373 CACAGAAATATGAAGATGTGCCTAAACCCACCTGCCACTCTATCGATCCACGGCTTGCGCATCCC
713 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
** * * * * *
19398438 GTCTCTCTGGCCGACAAAGTGCCTCCCCCCCCGCCCACCCGCTCGTTTCGTCGGTTAGTTTAGGC
778 GTCTCTCTGGCCGACGTAGTG--------CCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGC
* ** * * *
19398503 ATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGTTTACGATAGCAAGATC
835 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCAGGATC
*** * * * *
19398562 -AGCAGTGTGTAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAACTG
1 GA-CAGCACGCAGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTG
* * *
19398626 AGCGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTA
64 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * *
19398691 CGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGAGACTGCACATGCTGGGCTCGG
129 CGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCACATGCTGGGCTCGG
* * * * * **
19398756 GCATGTACTGGTGCCGCATTGTTCTTCACAGGGGCACCATCATCGGAGCATCATCGGAGAACCTG
194 GCATGTGCTGGTGCCGTATTTTTCTTCTC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
* * ** * * *
19398821 GCCGGCGACATTAGGGTTCCGGTGATCGGGGGAGCCGAGGGAGTGTGCGCACATGATTTGCGATG
258 ACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATG
* * *
19398886 GGTGCTGGTACTTAGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
322 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
19398951 CTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGTCATTAAAGTGTCTGAAATTGGGA
387 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
19399016 CACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
452 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
19399081 GCCAACAAAAATACAAGGATCATGTCTACCATGTTTGTGGCCAAAACTCCTTTCGAAAAAATTTT
517 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
** * * *
19399146 AAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAAGAGAAAACGGGTCGTCTTGCCAA
582 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
19399211 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
647 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
19399276 ATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCC
712 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
19399341 GGTCTCTTTGGCTGACGTAGT----GCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGA
777 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGA
* * * *
19399402 GTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGC-AGTAGCAGGATC
842 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGA-TAGCAGGATC
* * * * * *
19399454 GACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCTTGCCCTTCTAGTC-AGTTG
1 GACAGCACGCAGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCTGCCCCTCTGGCCGA-CTG
* *
19399518 AGCGCCCGCACGTTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
64 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * * * **
19399583 CAGAGTTCATTTCCAGTCTAAGATCAAATCGGATCGAGGGTTGCGACAGCACATGCTGGGCTCAA
129 CGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCACATGCTGGGCTCGG
* * ** * * * * * *
19399648 GCATGTGCTGGTGTCGTATTTTTCTTCACCGGGGTGCCATCGCCGTAGCATTGTCAGAGAACTTG
194 GCATGTGCTGGTGCCGTATTTTTCTTC-TCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
* * * * *
19399713 ACCGGCAGCATTGGGGTTCCGGCGATC-AGGGGGCC-GGGGG-GTGCGCACATGATGTGTGATGG
258 ACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
19399775 GTTCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAACCCTCGAGAACTCACACCCCC
323 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * *
19399840 TTAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGTCGTTAAAGTGTCTGAATTGGGGAC
388 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
19399905 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATG
453 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
19399970 CCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCCGAAAAAATTTTA
518 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
*
19400035 AAAAATCTCGAACCG-ATAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
583 AAAAATCCCGAACCGTA-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * *
19400099 GAAACTTCACGTAAAGGCTTAAGGGGCCATTGGATGAATTTACAAGCCATAAAAATGGCATTGAC
647 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
19400164 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
712 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
** * * * *
19400229 TATCTCTCTGGCCGACGTAGTGCCCACCAGCTCG--T-TTT-GTCGGTTGGCTT-GTGCATACGG
777 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAG-GCATACGG
* ** * * ** *
19400289 AGTTCATTCCCAATCTAAGATTGGACCAGACCGAGGGTTATGGCAGTAGGATC
841 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCAGGATC
** * * * * * ** *
19400342 GGTAGCACGGAAAGGGGGACCTGATCGATTCACGGCTTGTACATCCCGCCCCTCTGGCCGACTGA
1 GACAGCACGCAGAGGGGGACCCGACCGA-TCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGA
* * * *
19400407 ACACCCGCGCGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATAC
65 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * *
19400471 GGAGTTCATTCCTAGTCTAAGATCGGACCGAACGGAGGGTTGCGACAGCACATGCTGGGCTCGGG
130 GGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * * ** *
19400536 CATGAGCTGGTGCCATTTTTTTCTTCATCGGGGCACCATAATCGAAGCATCGCCGGAGAACCTGA
195 CATGTGCTGGTGCCGTATTTTTCTTC-TCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * * * *
19400601 TCGGTGGCATTGGGGTTACGACGATCGGGGGGGCCGGACGGGGTGTGCACACATGATGTGTGATG
259 CCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGG--GGGGTGTGCGCACATGATGTGCGATG
* * *
19400666 GGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTTACACCCC
322 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
19400731 CTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGA
387 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
19400796 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTGTGCAT
452 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * ** ** *
19400861 -CTAAAAAAAATACAAGGATCACGTCTATGAAGTTTGGGGCCAAAACTCCTTCCGAAAAGCTTTC
517 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * ** *
19400925 AAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTATTTTGCCAT
582 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
19400990 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCC
647 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * ** *
19401055 ACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATTGCTTGCACATCC
712 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
19401120 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGA
777 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGA
* * *
19401185 GTTCATTCCCAGTCTAAGATCAGGCCGGACCGAGGGTTGCGATAGTAGGATC
842 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCAGGATC
* * * * * * * *
19401237 GACAGCACGTAGAGGGGGACTCAACCGATCCCTGACTTGCGCATCCTACCCCTCTAGACGGCTGA
1 GACAGCACGCAGAGGGGGACCCGACCGATCCC-GGCTTGCGCATCCTGCCCCTCTGGCCGACTGA
* *
19401302 GCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
65 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * *
19401367 GGAGTTCATTCCCAGTCTAAGAACAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAG
130 GGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * *
19401432 CATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCAGAGAACCTGA
195 CATGTGCTGGTGCCGTATTTTTCTTC-TCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * ** * * * *
19401497 TCGACGGCATTAGGGTTTTGATGATCGGGGGGGCAGTTGGGGGTTTGCGCACATGATGTGCAATG
259 CCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCG--GGGGGTGTGCGCACATGATGTGCGATG
* * *
19401562 GGTGCTGGTACTTGGCCCTTATATTGG-CCCCTCTCCCTCATCAAACATCCAGAACTCACACCCC
322 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
19401626 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAGTGTCTGAAATTGGGA
387 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
19401690 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCAT
452 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
19401755 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAACACTCCTTCCAAAAAAATTTT
517 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
** * * *
19401820 GCAACATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCAT
582 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
19401885 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
647 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
19401950 ACGCAGAAATATGAATG-TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
712 ACGCAGAAATATGAA-GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
19402014 CCGTCTCTCTGGTCGACGTAGTGCCCGCCTGCCCCCCCCGCATGCTCATTTCATCGGTTGGCTTA
776 CCGTCTCTCTGGCCGACGTAGTG--C-CC-G-CCCGCCCGC-T--T-GTTTCATCGGTTGGCTTA
* * * *
19402079 GGCATACGGTGTTTATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTACGGTAGCAGGATC
832 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCAGGATC
* * * *
19402141 AACAGCACGCAGAGGGGGACCCGATCGATCCCTGGCTTGTGCATCCCGCCCCTCTGGCCGACTGA
1 GACAGCACGCAGAGGGGGACCCGACCGATCCC-GGCTTGCGCATCCTGCCCCTCTGGCCGACTGA
* * *
19402206 ACGCCCGCACGCTCGTTTCGTGGGTTGACATAGGCATATGGAGTTCATTCCCAGTCTAAGCATAC
65 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * ** * * *
19402271 GGAGTTCATT-CCAGTCTAAGATCGGACCGGACCAAGGGTTATGGCAGCACAAGCTGGGCCCGGG
130 GGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
*
19402335 CATGTGCTGGTGCCGTATTTTTCTACGTCGGGGCACCATCGTCGGAGCATCGTCC-GAGAACCTG
195 CATGTGCTGGTGCCGTATTTTTCTTC-TCGGGGCACCATCGTCGGAGCATCG-CCGGAGAACCTG
* * * *
19402399 ACCGGCGGCATTAGGGTTTCGATGATCGAGGGGGTCGGGGGGATGTGCGCACATGATGTGCGATG
258 ACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATG
* *
19402464 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTCGAGAACTAACACCCC
322 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
19402529 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATGGGGA
387 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
19402594 CAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTGTTAGCTGATTTTTTTTGTGCAT
452 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
19402659 GCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACGCATTCCGAAAAAATTTT
517 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * **
19402724 AAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATAAGTCGTCTTGCCAT
582 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
19402789 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
647 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * ** * **
19402854 ATGCAAAAATACAAAGATGTACCTAAATTCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
712 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * *
19402919 CGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCCGTTCGTTTCGTCAGTTGCCTTATG
777 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG------C-TT-GTTTCATCGGTTGGCTTAGG
*
19402984 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
834 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
19403030 GCAGCAGCAC
Statistics
Matches: 3920, Mismatches: 482, Indels: 121
0.87 0.11 0.03
Matches are distributed among these distances:
887 142 0.04
888 616 0.16
889 10 0.00
891 275 0.07
892 537 0.14
893 216 0.06
894 94 0.02
895 560 0.14
896 362 0.09
897 1 0.00
898 3 0.00
899 8 0.00
900 9 0.00
901 8 0.00
902 48 0.01
903 275 0.07
904 754 0.19
905 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (893 bp):
GACAGCACGCAGAGGGGGACCCGACCGATCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGTATTTTTCTTCTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
GGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCAGGATC
Found at i:19402290 original size:25 final size:26
Alignment explanation
Indices: 19402239--19402290 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19402229 GTTGACATAG
*
19402239 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19402265 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19402290 G
1 G
19402291 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19403651 original size:718 final size:718
Alignment explanation
Indices: 19402265--19405867 Score: 3251
Period size: 718 Copynumber: 5.1 Consensus size: 718
19402255 CCCAGTCTAA
* * * * * *
19402265 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGGACCAAGGGTTATGGCAGCACAAGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTAGCAGCACATGCTGGG
* * * * *
19402329 CCCGGGCATGTGCTGGTGCCGTATTTTTCTACGTCGGGGCACCATCGTCGGAGCATCGTCC-GAG
66 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT-GGCCGGAG
* * *
19402393 AACCTGACCGGCGGCATTAGGGTTTCGATGATCGAGGGGGTCGGGGGGATGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTTCGATGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGT
*
19402458 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTT-TCCCTCATCAAACCTCGAGAACTA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTTATCCCTCATCAAACCTCGAGAACTC
* *
19402522 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAA
* *
19402587 ATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTGTTAGCTGATTTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGCTGATTTTTTT
* *
19402652 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACGCATTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGAGCCAAAACCCATTCCGAAA
*
19402717 AAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATAAGTCGTC
453 AAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATAAGTCGTC
19402782 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * ** *
19402847 CATTGGCATGCAAAAATACAAAGATGTACCTAAATTCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCACACAAAAATACAAAGATGCACCTAAACCCACCTACCACCCTATCGATACACGGCTTG
* * *
19402912 CGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCCGTTCGTTTCGTCAGTTG
648 CGCATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCAGTTG
*
19402977 CCTTAT
713 CCTTAG
* *
19402983 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATTCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTAGCAGCACATGCTGGG
*
19403048 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCAACGTCGGAGCATGGCCGGAGA
66 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATGGCCGGAGA
* * * * *
19403113 ATCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTTCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
** * *
19403178 GATGGGTGCCCGTAGTTGGCCTTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACA
* * *
19403243 CCCCTTTAAAGAGCATTTCAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATG
*
19403308 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGCTGATTTTTTTTGT
** * *
19403373 GCATGCCAACAAAAATACAAGGATCATTTCTACCAAGTTTGGATCCAAAACCCCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGAGCCAAAACCCATTCCGAAAAAA
**
19403438 TTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAA-AGAGTCGTCTT
456 TTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATA-AGTCGTCTT
*
19403502 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
19403567 TTGGCACACAAAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCG
585 TTGGCACACAAAAATACAAAGATGCACCTAAACCCACCTACCACCCTATCGATACACGGCTTGCG
* * * * *
19403632 CATCCCGTCTCTCTGGCCGGAGTAGTGCCCGTCCGCCCTCCCGCCCGCTCGTTTCGTCGGTTGGC
650 CATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCAGTTGCC
19403697 TTAG
715 TTAG
* *
19403701 GCATGTGGAGTTCATTCCCAGTC-AAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGGC
1 GCATATGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A---CC---G---GA-CCGA--GGG-
* * * * *
19403765 TGAAGGTTATGGTAGCACATGCTGGGCTCGGGCATCTGCTGGTG-TCGCATTTTTCTTCCTCGAG
46 T---TG-TA--GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCT-GCATTTTTCTTCGTCGGG
** * * ** * *
19403829 GCACCATCACCGGAGCATCGCTGGAGAACCTGATTGGCGACATTGGCGTTTCGATGATCGGGGGG
104 GCACCATCGTCGGAGCATGGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGATGATCGGGGGG
19403894 GCCAGGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
169 GCC--GGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
19403959 CTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
231 TTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
19404024 CTACCAGTAGCCATTAAAGTGTCTAAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTG--
296 CTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* ** * * * *
19404086 ---TTC-A--TGTCTA-C-CA---AGTTTG-G---GGC--C--AAA-AC-----TC-CTTTCGAA
361 CACTTCGAGTTGT-TAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-ATCTAC
* * * * * * * ** ** *
19404125 AAAATTT-TA--AAAAATCCCGA-ACC-ACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGA
424 CAAGTTTGGAGCCAAAA-CCC-ATTCCGA-AAAAATTTTAAAAAATC--CCAAACCACAAAA--A
* **** ** ** * * * * *
19404185 GTCGTC--TTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCTTTTG-TATG-AA-TTTAC---
482 GT-TTCAAAAATCATGAAAAAT-A---GAA--AATAA--GTCGTCTTGCCATGAAACTTCACGTG
* * ** * * ** *
19404242 AAGCCATAAAAATGA-CATTGGTACG----TAGAA---ATATTAA--G-A-TGTG--C-C--TAA
538 AAGGC-T-TAAGGGACCATT-GTATGAATTTACAAGCCATAAAAATGGCATTG-GCACACAAAAA
* * * * *
19404290 -AC------GCACCT--A-CCACC--CTA-TCGAT--ACAC--GGCTTGTGCATCCCGTCTCTCT
599 TACAAAGATGCACCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCGTCTCTCT
* ** ** * * * *
19404338 GGTCGGAGCCGTGCCCGCCCGCCCTTCCGCCCGCTCATTTCGTCGGTTGGCTTAG
664 GGCCGGAGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCAGTTGCCTTAG
* * * * ***
19404393 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTACGGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTAGCAGCACATGCTGGG
* * * * * *
19404458 CTCGGGCATGTGCTGGTG-TCACAATTTTCTTCATCGGGGCACCATTGCCGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCT-GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATGGCCGGAG
* ** * *
19404522 AACCTGACCGGTGGCATTGGGG-TTCTGGCGATCGGCGGGACCGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTTC-GATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
19404586 GCGATGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCA
* * * * * **
19404651 CACCTCCTTACAGAGCATTTGAGATTTTACAGGTTTGTTGCCAATAGCCATTAAAGTGTCCGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAA
* * *
19404716 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGCTGATTTTTTTT
* ** * *
19404781 GTGCAAT-CCAACAAAAATACAAGGATGATGTCTGCCAAGTTTAGG-GCCAAAACTCC-TTCCAA
389 GTGC-ATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT-GGAGCCAAAAC-CCATTCCGA
* * * *
19404843 AAAAATTTAAAAAAAT-CCAGAACCGCAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAATGAGT
451 AAAAATTTTAAAAAATCCCA-AACCACAAAAAG-TTTCAAAAATCATGAAAAATAGAAAATAAGT
* * * * *
19404907 CATCTTGCCATGAAACTTCACGTGGAGGCTTAAGGAACAATTGTATGAATTTAGAAG-CAT-AAA
514 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * ** * * *
19404970 ATGGCAATTGGCAATACCAGAATA-ATGAAGATGTGCCTAGACCCA-CTCCCA-CCTATCGATCG
579 ATGGC-ATTGGC-ACACAAAAATACA--AAGATGCACCTAAACCCACCTACCACCCTATCGAT-A
* * * *
19405032 CAC-GCTTGCGCATCCCGTCTCTCTGGCCGGCGT-GTGCTTC-TCCG-CCGCTAGCCGCCCG-TC
639 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGAGTAGTGC-CCGCCCGCCCGC---CCACCCGCTC
* *
19405092 GTTTCATC-GTTGGCTTAG
700 GTTTCGTCAGTTGCCTTAG
* * *
19405110 GCATTACGGAGTTCATTCCCAGTCTAAGATC-GAAACGGATGCGAGGGGTTATCAGTAGCA-CAC
1 GCA-TATGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGA-CCGA-GGG-T-T--GTAGCAGCAC
* * *
19405173 ATGCTGGGCTCGGGCTTGGGTGTTGGTG-T-CATATTTTTCTTCGCACAGGGGCACCAT--TC--
58 ATGCTGGGCTCGGGCAT--GTGCTGGTGCTGC--ATTTTTCTTCG-TC-GGGGCACCATCGTCGG
* * * * ** **
19405232 -GCA-----AG-GAA-CTGA-CGG-TGAATTGGGGTTCCGCCGATCGAGGGGGCGGGGGGGGGTG
117 AGCATGGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGATGATCG-GGGGG-GCCGGGGGGTG
* *
19405287 TGCGCACATGGATGTGCACATGGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
180 TGCGCACAT-GATGTGC-GAT-GGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCAT
*
19405352 CAAACCTCGAGAACTCAC-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
242 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGC
* * *
19405416 CATTAAAGTGTCTGAAATGGGGACATTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTT
307 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * * *
19405481 TTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
372 GTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGAGCC
* * *** *
19405546 AAAACGGC-TTCCGAAAAAATTTTAAAAAATCCCGAACTGTAAAAAGTTTCGAAAATCATGAAAA
437 AAAAC-CCATTCCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAA
** * *
19405610 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAGTTT
501 ATAGAAAATAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
** * ** *** * * *
19405675 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACTCAACTGCCACCC
566 ACAAGCCATAAAAATGGCATTGGCACACAAAAATACAAAGATGCACCTAAACCCACCTACCACCC
* * * **
19405740 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGGCGGCGTA--G--CGCCCGCCCGCCCGTCC
631 TATCGATACACGGCTTGCGCATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCCCACCC
* * *
19405801 GCTCGTTTCATC-GATTGGCTTAT
696 GCTCGTTTCGTCAG-TTGCCTTAG
* *
19405824 GCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
19405868 ATTACGGCAG
Statistics
Matches: 2371, Mismatches: 332, Indels: 371
0.77 0.11 0.12
Matches are distributed among these distances:
664 141 0.06
665 36 0.02
666 3 0.00
667 99 0.04
670 3 0.00
671 1 0.00
672 1 0.00
673 4 0.00
674 4 0.00
676 3 0.00
677 6 0.00
678 1 0.00
680 1 0.00
681 1 0.00
683 8 0.00
684 3 0.00
685 7 0.00
686 7 0.00
687 10 0.00
688 4 0.00
689 8 0.00
690 3 0.00
691 27 0.01
692 95 0.04
693 21 0.01
694 11 0.00
696 5 0.00
697 4 0.00
699 5 0.00
700 2 0.00
702 7 0.00
703 1 0.00
708 1 0.00
709 2 0.00
710 4 0.00
711 3 0.00
712 12 0.01
713 62 0.03
714 31 0.01
715 41 0.02
716 116 0.05
717 301 0.13
718 670 0.28
719 163 0.07
720 15 0.01
721 7 0.00
722 10 0.00
723 25 0.01
724 17 0.01
725 25 0.01
726 4 0.00
727 17 0.01
728 6 0.00
729 2 0.00
730 1 0.00
732 1 0.00
733 6 0.00
734 3 0.00
736 4 0.00
737 4 0.00
738 2 0.00
739 1 0.00
740 4 0.00
741 1 0.00
742 1 0.00
743 100 0.04
745 36 0.02
746 141 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (718 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTAGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATGGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTTCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGCTGATTTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGAGCCAAAACCCATTCCGAAAAAA
TTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATAAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAAAAATACAAAGATGCACCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCAGTTGCCT
TAG
Found at i:19405472 original size:717 final size:707
Alignment explanation
Indices: 19404087--19405879 Score: 2279
Period size: 717 Copynumber: 2.5 Consensus size: 707
19404077 AAAATCTTGT
* *
19404087 TCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCACAA
1 TCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAA
19404152 AAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
66 AAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* ** * * *
19404217 TAAGGGGCCTTTTGTATGAATTTACAAGCCATAAAAATGACATTGG--TACGTAGAAATATTAAG
131 TAA-GGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATAC-CAGAAATATGAAG
* * * * *
19404280 ATGTGCCTAAACGCACCTACCACCCTATCGATACACGGCTTGTGCATCCCGTCTCTCTGGTCGGA
194 ATGTGCCTAAACCCA-CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * *
19404345 GCCGTGCCCGCCCGCCCTTCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
258 G-TGTG-CC-CCCGCCCTGCCGCCCGCTCGTTTCATC-GTTGGCTTAGGCATACGGAGTTCATTC
*
19404410 CCAGTCTAAGATCGGACTGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
319 CCAGTCTAAGATCGAACTGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* *
19404475 GTCACAATTTTCTTCATCGGGGCACCATTGCCGGAGCATCGCCGGAGAACCTGACCGGTGGCATT
384 GTCACAATTTTCTTCATCGGGGCACCATT-CC-G-GCA----CAGAGAACCTGACCGGTGGAATT
* * *
19404540 GGGGTTCTGGCGATCGGCGGGACCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
442 GGGGTTCCGCCGATCGGCGGGACCGGGGGGTGTGCGCACATGATGTGCCATGGGTGCTGGTACTT
* *
19404605 GGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTACAGAGCATT
507 GGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
19404670 TGAGATTTTACAGGTTTGTTGCCAATAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAA
572 TGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAA
* *
19404735 TGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCAAT-CCAACAAAAAT
637 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGC-ATGCCAACAAAAAT
19404799 ACAAGGA
701 ACAAGGA
* * * * * *
19404806 TGATGTCTGCCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCAGAACCGCAA
1 TCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAA
* * *
19404871 AAAGTTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGGAGGC
66 AAAG-TTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
19404936 TTAAGGAACAATTGTATGAATTTAGAAG-CAT-AAAATGGCAATTGGCAATACCAG-AATAATGA
130 TTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGC-ATTGGC-ATACCAGAAAT-ATGA
* *
19404998 AGATGTGCCTAGACCCACTCCCA-CCTATCGATCGCAC-GCTTGCGCATCCCGTCTCTCTGGCCG
192 AGATGTGCCTAAACCCACTACCACCCTATCGATC-CACGGCTTGCGCATCCCGTCTCTCTGGCCG
*
19405061 GCGTGTGCTTCTCCGCCGCTAGCCGCCCG-TCGTTTCATCGTTGGCTTAGGCATTACGGAGTTCA
256 GCGTGTGC--CCCCGCC-CT-GCCGCCCGCTCGTTTCATCGTTGGCTTAGGCA-TACGGAGTTCA
19405125 TTCCCAGTCTAAGATCGAAAC-GGA-TGCGAGGGGTTATCAGTAGCA-CACATGCTGGGCTCGGG
316 TTCCCAGTCTAAGATCG-AACTGGACT--GA-GGGTTA-C-G--GCAGCACATGCTGGGCTCGGG
* * * *
19405187 CTTGGGTGTTGGTGTCATATTTTTCTTCGCA-CAGGGGCACCATT-C-GCA-AG-GAA-CTGA-C
373 CAT--GTGCTGGTGTCACAATTTTCTT--CATC-GGGGCACCATTCCGGCACAGAGAACCTGACC
* *
19405245 GGT-GAATTGGGGTTCCGCCGATCGAG-GGGGCGGGGGGGGGTGTGCGCACATGGATGTGCACAT
433 GGTGGAATTGGGGTTCCGCCGATCG-GCGGGAC--CGGGGGGTGTGCGCACAT-GATGTGC-CAT
*
19405308 GGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-CC
493 -GGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
19405372 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
557 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCCGAAATGGG
* *
19405437 GACATTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGC
622 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGC
19405502 ATGCCAACAAAAATACAAGGA
687 ATGCCAACAAAAATACAAGGA
* ** * *
19405523 TCACGTCTACCAAGTTTGGGGCCAAAACGGCTTCCGAAAAAATTTTAAAAAATCCCGAACTGTAA
1 TCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAA
* *
19405588 AAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
66 AAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * *
19405653 TATGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCATTGGCAT-GCAGAAATATGAAGAT
131 TAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACCAGAAATATGAAGAT
* * * *
19405717 ATGCCTAAACTCAACTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGGCGGCGT
196 GTGCCTAAAC-CCACTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * * * *
19405782 -AGCGCCCGCCC-GCCCGTCCGCTCGTTTCATCGATTGGCTTATGCATAGGGAGTTCATTCCCAG
260 GTGCCCCCGCCCTG-CCGCCCGCTCGTTTCATCG-TTGGCTTAGGCATACGGAGTTCATTCCCAG
** * *
19405845 TCTAAGATC-AGACCAGACCGAGGATTACGGCAGCA
323 TCTAAGATCGA-ACTGGACTGAGGGTTACGGCAGCA
19405880 AGATCGACAG
Statistics
Matches: 940, Mismatches: 89, Indels: 101
0.83 0.08 0.09
Matches are distributed among these distances:
707 3 0.00
708 2 0.00
709 1 0.00
710 1 0.00
711 7 0.01
712 10 0.01
713 62 0.07
714 21 0.02
715 40 0.04
716 108 0.11
717 279 0.30
718 153 0.16
719 102 0.11
720 87 0.09
721 4 0.00
722 4 0.00
723 19 0.02
724 3 0.00
725 20 0.02
726 1 0.00
727 13 0.01
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (707 bp):
TCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAA
AAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACCAGAAATATGAAGAT
GTGCCTAAACCCACTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTG
TGCCCCCGCCCTGCCGCCCGCTCGTTTCATCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCGAACTGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACAA
TTTTCTTCATCGGGGCACCATTCCGGCACAGAGAACCTGACCGGTGGAATTGGGGTTCCGCCGAT
CGGCGGGACCGGGGGGTGTGCGCACATGATGTGCCATGGGTGCTGGTACTTGGCCCTTATAATGG
CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTGCCAATAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGA
Found at i:19407024 original size:26 final size:26
Alignment explanation
Indices: 19406980--19407032 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19406970 GTTGACTTAG
*
19406980 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCACTCCCAGTCTAA
* *
19407006 GCATACGGAGTTCACTCCCAGTTTAA
1 GCATACGGAGATCACTCCCAGTCTAA
19407032 G
1 G
19407033 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCACTCCCAGTCTAA
Found at i:19407911 original size:26 final size:26
Alignment explanation
Indices: 19407882--19407932 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
19407872 GTTGACTTAG
19407882 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19407908 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATTCCCAATCTA
19407933 TGATCGGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19408621 original size:895 final size:895
Alignment explanation
Indices: 19406948--19408662 Score: 2503
Period size: 895 Copynumber: 1.9 Consensus size: 895
19406938 GTCGGCTAAT
* *
19406948 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGATCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGATCATTCCCAATCTAAGCATACG
* * * * **
19407013 GAGTTCACTCCCAGTTTAAGATTGGACCAGACCGAGGATTGCGGTAGCACATGCTGGGCTCGGGC
66 GAGTTCACTCCCAATCTAAGATCGGACCAGACCGAGGATTACGACAGCACATGCTGGGCTCGGGC
* **
19407078 ATGTGCTGGTGCAACATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCACCGAGAACCTGACC
131 ATATGCTGGTGCAACATTTTTCTTCACCGGGG--CCA---TCGGAGCAT-ACCGAGAACCTGACC
*
19407143 GACAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGAGTGTGCACATGATGTGCGATGGGTGC
190 GACAGCATTGGGGTTCCGACGAACGGGGGGCCGGGGGGAGTGTGCACATGATGTGCGATGGGTGC
* *
19407208 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACGCCCCCTTAA
255 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTAAA
*
19407273 AGAGCATTTGAGATATTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGCACTTT
320 AGAGCATTTGAGATATTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGCACTTT
* * *
19407338 TTTCAAATGGTCACAAAAACTTGTATACTTTGAGTTTTTAGCTGATTTTTTTTGTGGTTGCCAAA
385 TTTCAAATAGTCACAAAAACTTGTACACTTTGAGTTTTTAGCTGATTTTCTTTGTGGTTGCC-AA
* * *
19407403 AAAAAAAAACAAGGATCATGTCTACTAAGTTTGGGGCTAAAAATCCTTCTGAAAAAATTTTAAAA
449 AAAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAA
* * *
19407468 AATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
514 AATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCCTACCATGAAA
* *
19407533 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT
579 CTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
* *
19407598 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGTC
644 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCTGTC
* * * * ** *
19407663 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACCCGCTTGGTCCGTCGGTTGGCATAGGCATA
709 TCTCTGGCCGACGTAGTGCCCGACCACCCACCCACCCACTCAGTCCGTCAGTTGGCATAGGCATA
* * *
19407728 TGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGGCTGCGATAGCAAGATCGGTAGCATG
774 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGCTGCGATAGCAAGATCGGTAGCATG
19407793 CAGAAGAGGACTCGACCGATCCTCAGCTTACGCATCCCGCCCCTATGGTTGACTGAG
839 CAGAAGAGGACTCGACCGATCCTCAGCTTACGCATCCCGCCCCTATGGTTGACTGAG
* *
19407850 CGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACG
1 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGATCATTCCCAATCTAAGCATACG
* * * * *
19407915 GAGTTCATTCCCAATCTATGATCGGACCGGATCGAGGGTTACGACAGCACATGCTGGGCTCGGGC
66 GAGTTCACTCCCAATCTAAGATCGGACCAGACCGAGGATTACGACAGCACATGCTGGGCTCGGGC
*** * * * *
19407980 ATATGCTGGTGCCGTATTTTTCTTCATCGGGG-CA-C-GATCAT-CGGAGAACCTGACCGACGGC
131 ATATGCTGGTGCAACATTTTTCTTCACCGGGGCCATCGGAGCATACCGAGAACCTGACCGACAGC
19408041 ATTGGGGTTCCGACGAACGGGGGGCCGAGGGGGAGGTGTGCACACATGATGTGCGATGGGTGCTG
196 ATTGGGGTTCCGACGAACGGGGGGCCG-GGGGGA-GTGTG--CACATGATGTGCGATGGGTGCTG
* * *
19408106 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCGTCGTAAAA
257 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC-CCCTAAAA
* * * * *
19408171 G-GCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTT
321 GAGCATTTGAGATATTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG-CACTTT
*
19408235 TTTCAAATAGTCACAAAATCTTGTACACTTCT-AGTTTTTAGCTGATTTTCTTTGTGCG-TGCC-
385 TTTCAAATAGTCACAAAAACTTGTACACTT-TGAGTTTTTAGCTGATTTTCTTTGTG-GTTGCCA
* * *
19408297 AAAAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-TCGAAAAAATTTTAA
448 AAAAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCT-GAAAAAATTTTAA
* * * * *
19408361 AAAATCTCGAACGGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCCTACCATGA
512 AAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCCTACCATGA
* *
19408426 AACTTCACGTGAAGGTTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
577 AACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
19408491 GCAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCTG
642 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCTG
* * * * *
19408556 TCTCTCTGGCCGGCGTAGTGCCCGACCACCCACCCGCCCACTCATTTCGTCAGTTGGCTTAGGCA
707 TCTCTCTGGCCGACGTAGTGCCCGACCACCCACCCACCCACTCAGTCCGTCAGTTGGCATAGGCA
* *
19408621 TACGGAGTTCATTCTCAGTCTAAGATCGGACCAGACCGAGGG
772 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
19408663 TTACGGCAGC
Statistics
Matches: 724, Mismatches: 80, Indels: 25
0.87 0.10 0.03
Matches are distributed among these distances:
892 44 0.06
893 6 0.01
894 11 0.02
895 326 0.45
896 127 0.18
897 66 0.09
898 2 0.00
899 2 0.00
902 140 0.19
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (895 bp):
CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGATCATTCCCAATCTAAGCATACG
GAGTTCACTCCCAATCTAAGATCGGACCAGACCGAGGATTACGACAGCACATGCTGGGCTCGGGC
ATATGCTGGTGCAACATTTTTCTTCACCGGGGCCATCGGAGCATACCGAGAACCTGACCGACAGC
ATTGGGGTTCCGACGAACGGGGGGCCGGGGGGAGTGTGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTAAAAGAGCA
TTTGAGATATTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGCACTTTTTTCAA
ATAGTCACAAAAACTTGTACACTTTGAGTTTTTAGCTGATTTTCTTTGTGGTTGCCAAAAAAAAA
AACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCTCA
AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCCTACCATGAAACTTCACG
TGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCTGTCTCTCTGG
CCGACGTAGTGCCCGACCACCCACCCACCCACTCAGTCCGTCAGTTGGCATAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCAGACCGAGGGCTGCGATAGCAAGATCGGTAGCATGCAGAAGA
GGACTCGACCGATCCTCAGCTTACGCATCCCGCCCCTATGGTTGACTGAG
Found at i:19409555 original size:365 final size:365
Alignment explanation
Indices: 19408885--19409615 Score: 984
Period size: 365 Copynumber: 2.0 Consensus size: 365
19408875 CTTCATGTGA
* *
19408885 AGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
1 AGGCTTAAAGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* * * * * * *
19408950 AAATTTGCCTAAACCCACTTACCTCCCTATCGATCCACGGCTTGCGCATCTCGCCTCTCTGGCTG
66 AAATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGAGCATCCCGCCTCTCTGGCCG
* * * * * **
19409015 GCGTAGTGCTCGCCCGCCCGCCCGTGGGTTTCGTTGGTTGGCTTAGGCATATGGAGTTCATTCCC
131 ACGTAGTGCCCACCCGCCCGCCCGTGCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCC
* * * **
19409080 AGTCTAAGAGATGACCGGACTGAGGGTTACGACAGTAGGATTGGCAGCACGCAGAGGGGGACTTG
196 AGTCTAAGAGATGACCGAACTGAGGGTTACGACAGCAGGATTGGCAGCACACAGAGGGGGACCCG
* * *
19409145 GTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
261 ATCGATACCCAGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
*
19409210 GTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCAT
326 GTTCACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCAT
* * *
19409250 AGGCTTAAAGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGCAGAAATATGA
1 AGGCTTAAAGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* * *
19409315 AGATGTGCCTAAACCCACCTACCACCCTCTCAATCCACTGCTTGAGCATCCCGCCTCTCTGGCCG
66 AAATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGAGCATCCCGCCTCTCTGGCCG
19409380 ACGTAG-GTCCCACCCGCCCGCCCGCT-CGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTC
131 ACGTAGTG-CCCACCCGCCCGCCCG-TGCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTC
* ** ** *
19409443 CCAGTCTAA-A-ATTGGATCGAACTGAGGGTTGTGGTAGCCGGATTGGCAGCACACAGAGGGGGA
194 CCAGTCTAAGAGA-T-GACCGAACTGAGGGTTACGACAGCAGGATTGGCAGCACACAGAGGGGGA
* * * * * *
19409506 CCCGATCGATACCCGGCTTACGCGTCCCGGCCCTCTGGCCGGTTGAGCGCCCGCATGCTCGTTTG
257 CCCGATCGATACCCAGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* **
19409571 GTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
322 ATGGGTTCACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCAT
19409615 A
1 A
19409616 TGGAGTTCAT
Statistics
Matches: 316, Mismatches: 46, Indels: 8
0.85 0.12 0.02
Matches are distributed among these distances:
363 1 0.00
364 3 0.01
365 311 0.98
366 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24
Consensus pattern (365 bp):
AGGCTTAAAGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
AAATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGAGCATCCCGCCTCTCTGGCCG
ACGTAGTGCCCACCCGCCCGCCCGTGCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCC
AGTCTAAGAGATGACCGAACTGAGGGTTACGACAGCAGGATTGGCAGCACACAGAGGGGGACCCG
ATCGATACCCAGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
GTTCACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCAT
Found at i:19409614 original size:26 final size:26
Alignment explanation
Indices: 19409585--19409637 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19409575 GTTCACTTAG
19409585 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19409611 GCATATGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19409637 G
1 G
19409638 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19410524 original size:26 final size:26
Alignment explanation
Indices: 19410488--19410537 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19410478 GACTTAGGCA
*
19410488 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGAAGTTCATTCCCAGTCTAAGCG
19410514 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
19410538 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCG
Found at i:19411019 original size:26 final size:26
Alignment explanation
Indices: 19410967--19411019 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19410957 GTTGACTTAG
* **
19410967 GCATACGGAGTTTATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGACTAA
19410993 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
19411019 G
1 G
19411020 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:19411274 original size:26 final size:26
Alignment explanation
Indices: 19411238--19411290 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19411228 GTTGACTTAG
*
19411238 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19411264 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19411290 G
1 G
19411291 ATCGAACCGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19413032 original size:26 final size:26
Alignment explanation
Indices: 19413003--19413055 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19412993 GTTGACTTAG
19413003 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
19413029 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19413055 G
1 G
19413056 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19413534 original size:870 final size:870
Alignment explanation
Indices: 19412142--19414862 Score: 3512
Period size: 870 Copynumber: 3.1 Consensus size: 870
19412132 TTAGGCGTAT
* * * * * **
19412142 GGAGTTCATTCCCAGTCTAAGATCCGA-CTAGACCGAGGGTTGCGACAGCACATGCTT-AGCTTA
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACGGAGGGTTGCGGCAGCACATG-TTGGGCTCG
19412205 GGCATGTGCT-GTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATGGCCGGAGAACCT
64 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-C--CATC--AGC-T---CGGAGAACCT
* * * * *
19412269 AACCGGCGACATTGGGGTTCCAGCAATCGGGGGGGCCAGGGGGGTGTGCGCAAATGATGTGTGAT
120 GACCGACGGCATTGGGGTTCCAGCGATC-GGGGGG-CAGGGGGGTGTGCGCACATGATGTGTGAT
*
19412334 GGGTGCTGGTACTTGGCCGTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
183 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCGAGAACTCACACCC
*
19412399 CGTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
247 C-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC----AA--GTCTGAAATGGGG
*
19412464 ACACTTTTTTCAAATGGTCACAAAATTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCAT
305 ACACTTTTTTCAAATGGTCACAAAATTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
19412529 GCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT
370 GCCAACAAAAATACAAGGATCAGA-CTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT
* ** * *
19412594 TAAAAATCCCGAACCGTAAAAAGTTTTC-AAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCG
434 AAAAAATCCCGAACCACAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
19412658 TGAAACTTCACATGAAGGCTTAAGGGACCATTATATGAATTTTCAAGCCATAAAAATGGCATTGG
498 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
19412723 CATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGGTCGCACATC
563 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
19412788 CCGTCTCTCTGGCCGAAGTAATGCTCCCCCGCCCGCTCGTTTTGTCGGTTGGCATAGGCATACGG
628 CCGTCTCTCTGGCCGAAGT-ATGC-CCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
** * * *
19412853 AGTTCATTCCCAGTCTAAGATCAGACCAGATAGAGGGTTGCAGCAGCAGGATTGCAGCACGCAGA
691 AGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGGCAGCAGGATTGCAGCACGCAGA
* * * *
19412918 GGGGGACCCGATCGATCCCCGGCTTGTGCCTCCAGCCCCTCTGGCCGGCTGAGCGCCCGCATGCC
756 GGGGGACCCGATCGATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCTGAGCG-CCGCACGCT
* *
19412983 CGTTCCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC
819 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
*
19413035 GGAGTTCATTCCCAGTGTAAGATCAGACCGAACGGAGGGTTGCGGCAGCACATGTTGGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGAACGGAGGGTTGCGGCAGCACATGTTGGGCTCGGG
*
19413100 CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC-G-TCGGAGAACCTGACCGACGGCA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCAGCTCGGAGAACCTGACCGACGGCA
* * * *
19413163 TTGGGGTTTCGGCGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGCTACT
131 TTGGGGTTCCAGCGATCGGGGGGCAGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACT
* * *
19413228 TGGCCCTTATAGTGGCCCCCTATCCTCATC-AACCTCGATAACTCACACCCCTTAAAGAGAATTT
196 TGGCCCTTATATTGGCCCCCTATCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTT
* **
19413292 GAGATTTTACAGGTTTGCTGCCAATAGCC-A-T-TGAAATGGGGACACTTTTTTCAAACAGTCAC
261 GAGATTTTACAGGTTTGCTGCCAGTAGCCAAGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
19413354 AAAATCTTGTACACTTTGAGTTTTTATCTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
326 AAAAT-TTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * *
19413419 CATGACTACCAAGTTTGGGGCTAAAACTCCTTTCAAAAAAATTTTAAAAAATCCTGAACCACAAA
390 CA-GACTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCACAAA
* * * *
19413484 ATGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTCCACGTGAAGGCTG
454 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
19413549 AAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGT
519 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
*
19413614 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAT
584 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAAGTAT
* *
19413679 CGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTA
649 -G----CCC-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
19413744 AGATTGGACTGGATCGAGGGTTGCGGCAACAGGATCGACAGCGCGTAGAGGGGGACCCGATCGAT
708 AGATTGGACCGGATCGAGGGTTGCGGCAGCAGGATTG-CAGCACGCAGAGGGGGACCCGATCGAT
* * * * *
19413809 CCCCGGCTTGCGCATCCCGCCACTCTGGCCTGCTGATCGCCGCACGCTCATTTCGTGGGTTGACT
772 CCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCGCACGCTCGTTTCATGGGTTGACT
*
19413874 TAGGCATATGGAGTTCATTCCCAGTCTAAGCATAC
836 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * * * *
19413909 GGAGTTCTTTCCCAGTCTAAGAT-TGAACTGGATGGAGGGTTGTGGCAGCACTTGCTGGGCTCGG
1 GGAGTTCATTCCCAGTCTAAGATCAG-ACCGAACGGAGGGTTGCGGCAGCACATGTTGGGCTCGG
* * *
19413973 CCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGCAAGACCTTCGTCAGAGAACCTG
65 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--C-AG--C-TCG---GAGAACCTG
* * * * * *
19414038 ATCGACGGCATTAGGGTTCCAACGATTGGGGGGGCCGGGGGGTGTGCGCACATGAATG-GCGAAT
121 ACCGACGGCATTGGGGTTCCAGCGA-TCGGGGGGCAGGGGGGTGTGCGCACATG-ATGTGTG-AT
* * * *
19414102 GGGTGCTGGTACCTAGCCCTTATATTGGCCCTCTATTTCTCATCAAACCTCGAGAACTCACACCC
183 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA-TCCTCATCAAACCTCGAGAACTCACA-CC
* *
19414167 CCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
246 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC----AA--GTCTGAAATGGGG
* ** *
19414232 ACTCTTTTTTCAAATGGTCGTAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
305 ACACTTTTTTCAAATGGTCACAAAAT-TTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
19414297 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-GGAAAAATTT
369 TGCCAACAAAAATACAAGGATCA-GACTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
* *
19414361 TAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAAGAGAAAACGAGTTGTCTTGCCA
433 TAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
19414426 TGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGG
498 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
**
19414491 CATGCAGAAATATGAAGATGTGGTTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
563 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * *
19414556 CCGCCTCTCTGGCCG-ACTGA-G-CACCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGA
628 CCGTCTCTCTGGCCGAAGT-ATGCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * *
19414618 GTTCATTCCTAGTCTAAGATTGGACCGGATCGAGGGTTGTGGCAGTAGGATTGGCAGCACGCAGA
692 GTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGGCAGCAGGATT-GCAGCACGCAGA
* * *
19414683 GGGTGACCCCATCGTTCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCAGCCGCACGCT
756 GGGGGACCCGATCGATCCCCGGCTTGCGCATC-CGCCCCTCTGGCCGGCTGAGC-GCCGCACGCT
* * *
19414748 CGTTTTATGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATAT
819 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * * * * * *
19414800 GGAGTTCATTCCCAGACTATGATCGGACTGGACCGAGGGTTACGACAGTACATGCTGGGCTCG
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGAACGGAGGGTTGCGGCAGCACATGTTGGGCTCG
19414863 TTTCATCGGT
Statistics
Matches: 1605, Mismatches: 177, Indels: 94
0.86 0.09 0.05
Matches are distributed among these distances:
869 40 0.02
870 286 0.18
871 1 0.00
873 4 0.00
874 224 0.14
875 56 0.03
876 3 0.00
878 40 0.02
879 20 0.01
880 7 0.00
881 60 0.04
882 9 0.01
883 32 0.02
885 29 0.02
886 29 0.02
887 35 0.02
888 8 0.00
889 17 0.01
890 177 0.11
891 112 0.07
892 3 0.00
893 60 0.04
894 27 0.02
895 1 0.00
896 1 0.00
897 1 0.00
898 206 0.13
899 117 0.07
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (870 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCGAACGGAGGGTTGCGGCAGCACATGTTGGGCTCGGG
CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCAGCTCGGAGAACCTGACCGACGGCA
TTGGGGTTCCAGCGATCGGGGGGCAGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCAAGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
AGACTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCACAAAAA
GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAAGTATGC
CCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
CCGGATCGAGGGTTGCGGCAGCAGGATTGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTT
GCGCATCCGCCCCTCTGGCCGGCTGAGCGCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATAC
Found at i:19413913 original size:26 final size:26
Alignment explanation
Indices: 19413877--19413929 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19413867 GTTGACTTAG
*
19413877 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19413903 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19413929 G
1 G
19413930 ATTGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19415069 original size:26 final size:26
Alignment explanation
Indices: 19415040--19415092 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19415030 GTTGACTTAG
*
19415040 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
19415066 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
19415092 G
1 G
19415093 ATCAGATCGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:19415083 original size:272 final size:272
Alignment explanation
Indices: 19414586--19415133 Score: 699
Period size: 272 Copynumber: 2.0 Consensus size: 272
19414576 GCACCCGCAC
* * * *
19414586 GCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGATCGA
1 GCTCGTTTCATAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGA
* * * * * * * * *
19414651 GGGTTGTGGCAGTAGGATTGGCAGCACGCAGAGGGTGACCCCATCGTTCCCCGGCTTGCGCATCT
66 GGGTTGTGGCAGCAAGATCGACAGCACACAGAGGGTGACCCCACCGATCCCCGACTTGCGCATCC
* ** *
19414716 CGCCCCTCTGGCCGGCTGAGCAGCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTT
131 CGCCCATCTGGCCGGCTGAGCAGCCGCACGCTCGTTACATGGGTTGACTTAGGCATACGGAGTTC
* * * * *
19414781 ATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGACTATGATCGGA-CTGGACCGAGGGTTACGA
196 ATTCCCAGTCTAAGCATACGGAGCTCATTCCCAGACTAAGATCAGATC-GCACCGAGGGTTACGA
*
19414845 CAGTACATGCTGG
260 CAGCACATGCTGG
* * *
19414858 GCTCGTTTCATCGGTTGGCTTTGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CAG
1 GCTCGTTTCATAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATC-G
* * * *
19414922 AGTGTTGTGGCAGCAAGATCGATATCACACAGAGAGG-GACCCGACCGATCCCCGACTTGCGCAT
65 AGGGTTGTGGCAGCAAGATCGACAGCACACAGAG-GGTGACCCCACCGATCCCCGACTTGCGCAT
* * * *
19414986 CCCGCCCATCTGGTCGGCTGAGC-GCCTGTACGCTTGTTACGTGGGTTGACTTAGGCATACGGAG
129 CCCGCCCATCTGGCCGGCTGAGCAGCC-GCACGCTCGTTACATGGGTTGACTTAGGCATACGGAG
* *
19415050 TTCATTCCCAGTCTAAGCATACGGAGCTCATTCCCAGTCTAAGATCAGATCGCACCGAGGGTTGC
193 TTCATTCCCAGTCTAAGCATACGGAGCTCATTCCCAGACTAAGATCAGATCGCACCGAGGGTTAC
*
19415115 GGCAGCACATGCTGG
258 GACAGCACATGCTGG
19415130 GCTC
1 GCTC
19415134 AGGCATGTGC
Statistics
Matches: 235, Mismatches: 37, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
271 4 0.02
272 228 0.97
273 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (272 bp):
GCTCGTTTCATAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGA
GGGTTGTGGCAGCAAGATCGACAGCACACAGAGGGTGACCCCACCGATCCCCGACTTGCGCATCC
CGCCCATCTGGCCGGCTGAGCAGCCGCACGCTCGTTACATGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCATACGGAGCTCATTCCCAGACTAAGATCAGATCGCACCGAGGGTTACGAC
AGCACATGCTGG
Found at i:19415969 original size:26 final size:26
Alignment explanation
Indices: 19415933--19415985 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19415923 GTTGACTTAG
* *
19415933 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
19415959 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
19415985 G
1 G
19415986 ATCGGGCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:19417708 original size:25 final size:25
Alignment explanation
Indices: 19417680--19417731 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
19417670 TGACTTAGGC
* *
19417680 ATACGGAGTTCAATCCCAGTTTAAG
1 ATACAGAGTTCAATCCCAGTCTAAG
* *
19417705 ATACAGAGTTCATTCTCAGTCTAAG
1 ATACAGAGTTCAATCCCAGTCTAAG
19417730 AT
1 AT
19417732 CATACCGGAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (25 bp):
ATACAGAGTTCAATCCCAGTCTAAG
Found at i:19418617 original size:26 final size:26
Alignment explanation
Indices: 19418581--19418633 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19418571 GTTGACTTAG
19418581 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19418607 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19418633 G
1 G
19418634 ATCGGACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19418959 original size:904 final size:893
Alignment explanation
Indices: 19416825--19421015 Score: 5248
Period size: 872 Copynumber: 4.7 Consensus size: 893
19416815 GTTGACTTAG
* *
19416825 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGAACTGAGGGTTGTGGCAGCACATGCTGGG
1 GCATAC-GAGTTCATT-CCAGTCTAAGATCGGACC-AACCGAGGGTTGTGGCAGCACATGCTGGG
* ** *
19416890 CTCGGGCATGTGCTGGTTCCGTATTTTTCTTCACCGGGACACCAT--C--G--T--CGGAGAACC
63 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCGGGCATCACGGAGAACC
* * *
19416947 TGACCGGCAGCATTGGGGTTTC-AGCGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGTG
128 TGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* *
19417009 ATGGGTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
192 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
19417074 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAATGTCTGAAATGG
257 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGG
* *
19417139 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGGATTTTTTTGTG
322 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
* * *
19417204 CATGCCCAAAAAAATACAACGATCACGTCTACCAAGTTTGGGGACAAAA-TGCCTTCCAAAACAA
387 CATG-CCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCAAAAAAA
* * ** * *
19417268 TTTAAAAAAATCTTGAACCATAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTAGTCTTG
450 TTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
19417333 CCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTAGAAGCCATAAAAATAGCAT
515 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * **
19417398 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAT
580 TGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
19417463 ATCCCGTCTCTCTGGCCG-GTAT-----AG--TACCCACCCGCTCGTTTCGTCGGTTAGCTTAGG
645 ATCCCGTCTCTCTGGCCGCGTATGCGCCCGCCTGCCCACCCGCTCGTTTCGTCAGTTGGCTTAGG
* * *
19417520 CATACGGAGTTCATTCCTAGTCTAGGATCAGACCAGACCGAGGGTTGC-AGCAGCAAGATTGGCA
710 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA-CAGCAAGATCGGCA
* * * * * * *
19417584 GCACACAGAGGGGGACCCGACCGATCCTCGGCTTGTGCATCCCGCCCCTCTGACCGGCTGAGCGA
774 ACACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGC-A
* * * *
19417649 CC-GCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAATCCCAGTTTAA
838 CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
19417704 G-ATACAGAGTTCATTCTCAGTCTAAGATCATACCGGACGGAGGGTTGTGGCAGCACATGCTGGG
1 GCATAC-GAGTTCATTC-CAGTCTAAGATCGGACC-AACCGAGGGTTGTGGCAGCACATGCTGGG
* * * ** * *
19417768 CTCGGGCAAGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGAAGA
63 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCG-CGG-GCATC-ACGGAGA
* * *
19417833 ACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCGCATGATGTG
125 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
19417898 TGATGGGTGCTGGTACTTGGCCCTTATAGTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCAC
190 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * ** *
19417963 ACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGGTATTAAAGTGTCTGAAAT
255 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAAT
*
19418028 GGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
320 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
** * *
19418093 TGCATGCCAAAAGAAATACAAGGATCACGTCTAAAAAGGTTGGGGGCAAAACTCCTTCCAAAAAA
385 TGCATGCCAAAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* ** * * *
19418158 ATTTTAAAAAATCCGGAACCGCAAAAAG-TTCTGAAGGTCATTAAAAATAGAAAATGAGTCGTCT
449 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTC-GAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
19418222 TGCCATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
513 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** * * *
19418287 ATTGTCACATAAAAATATGAAGATGTACCCAAGCCCACCTACCACCCTATCGATCCACGGCTTGC
578 ATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
19418352 GCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCTGCCCACCTGCTCGTTTCGTCAGTTGG
643 GCATCCCGTCTCTCTGGCC-GCGTA-TG--CGCCCGCCTGCCCACCCGCTCGTTTCGTCAGTTGG
* * * * **
19418417 CTTACGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAAGAT
704 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGAT
** * * *
19418482 CAACAACACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTACCCCTCTGGCCGACTG
769 CGGCAACACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTG
* *
19418547 AGCACCTGCACGCTCGTTTTGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 AGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19418607 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGTTTGCGGCAGCACATGCTGGG
1 GCATAC-GAGTTCATT-CCAGTCTAAGATCGGACC-AACCGAGGGTTGTGGCAGCACATGCTGGG
19418672 CTCGGGCATGTGCAT-GTGCCACATTTTTCTTCACCGGGGCACCATCGCCAGGGCATCACCGGAG
63 CTCGGGCATGTGC-TGGTGCCACATTTTTCTTCACCGGGGCACCATCG-C-GGGCATCA-CGGAG
* * *
19418736 AACCCGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
124 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
19418801 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTTGAGAACTCA
189 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
19418866 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAATGTCTAAAA
254 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAA
* *
19418931 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
319 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
* * *
19418996 GTGCATGCCAAAAAAATTACAAGGATCACGTGTACCAAGTTTGGGACCAAAACTCCTTCCAAAGA
384 GTGCATGCCAAAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * *
19419061 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTTCAAAAATTGTGAAAAATAAAAAATGAGTCGTC
448 AATTTTAAAAAATCCTGAACCGCAAAAAG-TTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * **
19419126 ATGCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGG
512 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
19419191 GATTGGCATGCAGAAATATGAAGATG-AGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
577 CATTGGCACGCAGAAATATGAAGATGTA-CCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
19419255 GCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCCCGCTTGTTTCATC
641 GCGCATCCCGTCTCTCTGGCCG-CGTA-T----G--CGCCCGCCTGCCCACCCGCTCGTTTCGTC
* * ** *
19419320 GGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGACAG
698 AGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAG
* * * * * * ** *
19419385 CAGGATCGGCAACACGTAGAGGGGGACCCGACCAATCCCCCGCTTGTGCATGCCGTCCCTTTGGC
763 CAAGATCGGCAACACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGC
* ** * * * *
19419450 CGCCTGAGTGCCCGCATGCTCGTATCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
828 CGACTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
19419515 A
893 A
* **
19419516 G-AT-CG-G--------A--C------CGG----ACCGAGAGTTACGGCAGCACATGCTGGGCTC
1 GCATACGAGTTCATTCCAGTCTAAGATCGGACCAACCGAGGGTTGTGGCAGCACATGCTGGGCTC
*
19419558 GGGCATGTGCTGGTGCCACATTTTTCTT-AGTCGGGGCACCAT--C--G---CA-GGAGAACCTG
66 GGGCATGTGCTGGTGCCACATTTTTCTTCA-CCGGGGCACCATCGCGGGCATCACGGAGAACCTG
* * * * *
19419614 ACCGACGGCATTGGGGTTCCGACGATCGGCGGGGTCGTGGGGGTGTGCGCACATGATGTGCAATG
130 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
19419679 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
195 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
19419744 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGA
260 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGA
* * *
19419809 CATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTACCTGATTTTTTTTGTGCAT
325 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
19419874 GCAAAAAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTT
390 GC-CAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
* * * *
19419939 AAAAAATCTTGAATCAG-AAAAAGTTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCC
454 AAAAAATCCTGAA-CCGCAAAAAG-TTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
19420003 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
517 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
19420068 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
582 GCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
*
19420133 CCCGTCTCTCTGGCCGGCGTA-GCGCCCGCCTGCCC-CCTCCCTCGTTTCGTCAGTTGGCTTAGG
647 CCCGTCTCTCTGGCC-GCGTATGCGCCCGCCTGCCCACC-CGCTCGTTTCGTCAGTTGGCTTAGG
* * * * *
19420196 CATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCGTGGGTTGCGACAGCAGGATCGGCAG
710 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCGGCAA
* * **
19420261 CACGCAGAGGGGGACCCGACTGATCCTCGGCTTGCGCATCCCACCCCTCTGGCC-AGCTGAGTGC
775 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGA-CTGAGCAC
* *
19420325 CTG--CG--CG-CTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
839 CTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
19420371 -C-TA--AG---A-T-C--TC----ATCGG----ACCGAGGGTTGTGGCAGCACATGCTGGGCTA
1 GCATACGAGTTCATTCCAGTCTAAGATCGGACCAACCGAGGGTTGTGGCAGCACATGCTGGGCTC
19420417 GGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGAACC
66 GGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCG-CGG-GCATCA-CGGAGAACC
**
19420482 TGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCTAGGGGGGTGTGCGCACATGATGTGCGA
128 TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
* *
19420546 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACATCGAGAACTCACACC
193 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
19420611 CCCTTTAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAATGTCTGAAATGGG
258 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGG
*
19420676 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTGTGC
323 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * * *
19420741 ATGCCTACAAAAATAGAAGGATCATGTCTACCAATTTTGGGGCCAAAACTCATTTCAAAAAAATT
388 ATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * * *
19420806 TAAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAGCGAGTCGTCTTGC
452 TTAAAAAATCCT-GAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
19420870 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAATTGT-CAAAGCCA-AAAAATGGC
516 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG-AATT-TAC-AAGCCATAAAAATGGC
* * * * *
19420933 ATTGGAACACAGAAATGATTAAGATGT-GCTAAA-CCACCTA-CA-CCTAATCGGATCCACGACT
578 ATTGGCACGCAGAAAT-ATGAAGATGTACCTAAACCCACCTACCACCCT-ATC-GATCCACGGCT
*
19420994 GTGCGCATCCCATCTTCTCTGG
640 -TGCGCATCCCGTC-TCTCTGG
19421016 GCCACACATA
Statistics
Matches: 2916, Mismatches: 310, Indels: 181
0.86 0.09 0.05
Matches are distributed among these distances:
854 2 0.00
857 2 0.00
859 104 0.04
860 3 0.00
862 2 0.00
863 2 0.00
864 144 0.05
865 1 0.00
866 4 0.00
867 5 0.00
868 96 0.03
869 329 0.11
870 59 0.02
872 497 0.17
873 10 0.00
874 2 0.00
877 2 0.00
878 94 0.03
879 1 0.00
880 1 0.00
881 1 0.00
882 2 0.00
883 65 0.02
884 1 0.00
886 1 0.00
888 3 0.00
889 32 0.01
890 17 0.01
891 443 0.15
892 2 0.00
893 3 0.00
894 2 0.00
896 1 0.00
901 1 0.00
902 3 0.00
903 185 0.06
904 426 0.15
905 169 0.06
906 4 0.00
907 1 0.00
908 2 0.00
909 192 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (893 bp):
GCATACGAGTTCATTCCAGTCTAAGATCGGACCAACCGAGGGTTGTGGCAGCACATGCTGGGCTC
GGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCGGGCATCACGGAGAACCTGA
CCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
AAAATCCTGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
GCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGCGTATGCGCCCGCCTGCCCACCCGCTCGTTTCGTCAGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCGGCAACACGCA
GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCACCTGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19419293 original size:4 final size:4
Alignment explanation
Indices: 19419284--19419309 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
19419274 TCGACGTAGT
19419284 GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GC
19419310 TTGTTTCATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:19426935 original size:26 final size:26
Alignment explanation
Indices: 19426899--19426949 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19426889 TGACTTAGGT
19426899 ATACAGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
* *
19426925 ATACGGAGTTCATTCCCAGTTTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
19426950 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:19427745 original size:26 final size:26
Alignment explanation
Indices: 19427707--19427759 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19427697 GTTGACTTAG
*
19427707 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19427733 GCATATGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19427759 G
1 G
19427760 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19430305 original size:28 final size:26
Alignment explanation
Indices: 19430235--19430307 Score: 76
Period size: 28 Copynumber: 2.7 Consensus size: 26
19430225 TTAGGCATAT
*
19430235 GAGTTCATTTCCCAGTCCTAAGGCATAC
1 GAGTTCA-TTCCCAGT-CTAAGGAATAC
*
19430263 GAGTTCATTCTCAGTCTAA-GAATAC
1 GAGTTCATTCCCAGTCTAAGGAATAC
19430288 GAGGTTCCCATTCCCAGTCT
1 GA-GTT--CATTCCCAGTCT
19430308 GATTCGAACT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
25 7 0.18
26 7 0.18
27 7 0.18
28 18 0.46
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (26 bp):
GAGTTCATTCCCAGTCTAAGGAATAC
Found at i:19431174 original size:26 final size:26
Alignment explanation
Indices: 19431145--19431197 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19431135 GTTGACTTAG
*
19431145 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19431171 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19431197 G
1 G
19431198 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19432060 original size:26 final size:26
Alignment explanation
Indices: 19432031--19432109 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
19432021 GTTGACTTAG
19432031 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19432057 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19432083 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19432109 G
1 G
19432110 ATCGGACCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19432990 original size:26 final size:26
Alignment explanation
Indices: 19432954--19433006 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19432944 GTTGACTTAG
19432954 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19432980 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19433006 G
1 G
19433007 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19435407 original size:26 final size:26
Alignment explanation
Indices: 19435371--19435423 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19435361 GTTGACTTAG
*
19435371 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19435397 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19435423 G
1 G
19435424 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19436975 original size:26 final size:26
Alignment explanation
Indices: 19436938--19436990 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19436928 GTTGACTTAG
19436938 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
19436964 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
19436990 G
1 G
19436991 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:19437878 original size:26 final size:26
Alignment explanation
Indices: 19437842--19437894 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19437832 GTTAACTTAG
19437842 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19437868 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19437894 G
1 G
19437895 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19438766 original size:26 final size:26
Alignment explanation
Indices: 19438736--19438788 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19438726 GTTAACTTAG
19438736 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
19438762 GCATATGGAGTTCATTTCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19438788 G
1 G
19438789 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19439665 original size:26 final size:26
Alignment explanation
Indices: 19439625--19439677 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19439615 GTTAACTTTG
*
19439625 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGCTCATTTCCAGTCTAA
*
19439651 GCATACGGAGCTCATTTTCAGTCTAA
1 GCATACGGAGCTCATTTCCAGTCTAA
19439677 G
1 G
19439678 ATCGGACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGCTCATTTCCAGTCTAA
Found at i:19440003 original size:900 final size:898
Alignment explanation
Indices: 19436107--19451020 Score: 9209
Period size: 900 Copynumber: 16.4 Consensus size: 898
19436097 GCTGGCTTAG
* * * * * *
19436107 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
19436172 CTCGAGAATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATTG-TCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGTCGGAG
*
19436236 AACCTGACCGACGGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * * * ** *
19436301 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCCCTTCAAACCTATAGAACTGA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
** * *
19436366 CACCCTGTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
19436431 TGGGGACACTTTTCTCAAACGATCACAAAATCTTGTACACTTTGAGGTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
* * *
19436496 TGTGCAGGCCAACAAAAATACAA-GATCACGTCTACCAAGGTTGGGGCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
19436560 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTG----AT------TG-G--GCC
453 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGTC
* * *
19436612 ATT---A-AAAACTTCACGAGAAGGCTT-AGCGAACCATTGTATGAATTTACAAGCCATAAAAAT
518 -TTGCCATGAAACTTCACGCGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
19436672 GGCATTGG--CATGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCTTATCGATCCACGG
581 GGCATTGGCACATACA-AAA-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * **
19436735 CTTGTGCATCCCATCTCTTTGGTCGGCGTAGTGCCCGCCCGTCGGACCGCCCGCTAGTTTTATCG
644 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-C---CCGCCCGCTCGTTTCGTCG
*
19436800 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTC-----T---A----A-GA---TT---G--GCA
705 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAGGGTTGCGGCAGCA
** * ** * * * *
19436844 -GA-----A-CA--CAGAGGCAGACTCGGTCGATCCTCAGTTTGCGCCA-CCTGCCCCTCTGGCC
770 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG-CATCCCGCCCCTCTGGCC
* * **
19436899 GGCTGAGCGCCCGCACGCTCATTTCTTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAA
834 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * * *
19436964 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGAATGATGGTTACGGTAGAACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
19437029 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCGGAGA
* **
19437094 ACCTAACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * *
19437159 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19437224 ACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19437289 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTGTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
19437354 TGCATGCCGAA-AAAAATAGAAGGATCACGTTTCCCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
390 TGCATGCC-AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * * * *
19437418 AATTTTGAAAAATCTTGGATCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGTCT
* *
19437483 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
19437548 ATTGGCACGTAGAAATATGAAGATGTGCCCTAAACCCACCTACCACCCTA-CTGATCCACGGCTT
584 ATTGGCACATACAAAAATGAAGATGTG-CCTAAACCCACCTACCACCCTATC-GATCCACGGCTT
* * * * * *
19437612 ACGCATCCCGTTTCTCTGGCCGACCTAGAGCCCGCCACCTGTCCGCCCGCTCGTTTCGTCGGTTG
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C-CC-GCCCGCCCGCTCGTTTCGTCGGTTG
* * ** * ** *
19437677 GCATAGGCATACGAAGTTCATTCCCAGTCTAAGATGGGATCAAACTGATGGTTGCGGCAGCAGGA
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTGCGGCAGCAGGA
* * * * * * * * *
19437742 TCGGTAGCACGTAGAGGGGGACCCAATCGATCCCCGACTTGCACATCCTGCCCCTGTGGCCGACT
773 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
19437807 GAGCGCCCACACGCTCGTTTCGTTGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
19437868 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTTTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19437933 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCG-TCGGAGCATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGTCGGAG
* * *
19437997 AACCTGATCGACGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGGTGTGCGCACTTGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* *
19438062 GTGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
19438127 CGCCCCCTTAAAAAGAATTAGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
** *
19438192 TTTGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
19438257 GTGCATGCCAACAAAAATACAAGGATCATGTTTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAA
389 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** * * *
19438321 AATTTTAAAAAATCCCAAACCACAAAAA-TTTCAAAAATCGTGAAAAATACAAAACGAGTCATCT
454 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGTCT
* ***
19438385 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATATT
519 TGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
19438450 ATTGGCACATA-AAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
584 ATTGGCACATACAAAA-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *** * *
19438514 TGCATCCTGTCTCTCTGGCCAATGTAGT----GCCCGCCCGTCCGCTCGTTTCGTCAGTTGGCTT
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * *
19438575 AGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGCTTGTGGCAGCAGGATCGA
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGCAGCAGGATCGG
* * * * * *
19438640 CAGCGCGCAGAGGAGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCTGACTGAGC
777 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * *
19438705 GCTCGCATGTTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * * * *
19438762 GCATATGGAGTTCATTTCTAGTCTAAGATCAGACCAGACCGAGCATTACGACAGCAAATGGTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCT-GG
* * * *
19438827 GTTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTC-GGG-------G-T--ACCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCGGAG
* * *
19438881 AACCTGATCGACGGCATTGGGGTTCCTG-CGATCGGGGGGGCCGGGGGGTGTGCACCCATGATGT
130 AACCTGACCGACGGCATTGGGGTTCC-GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
19438945 GTGATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
19439010 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19439075 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTGGCTGAATGTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * ** ** *
19439140 ATGCATCCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAAACCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
19439205 AATTTTAAAAAATCTTGAACCGTAAAGAGTTTCGAAAATCATGAAAAAGAAAAAACGAGTCATCT
454 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGTCT
* * *
19439270 TGCCATGAAACTTCATGCAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGC
519 TGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
19439335 ATTGGCACATACAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACATACAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
19439400 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCTCGTTTCTTCGATTGGCTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * * ** *
19439465 GGCATGCAGAGTTTATTCACAGTCTAAGATCAAACTGGATCGATGGTTGCGATAACAGGATCGGC
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGCAGCAGGATCGGC
* * * * *
19439530 AACACGCAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTAGCCGGCTGAGCG
778 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
19439595 CCCGCACGCTCGTTTCGTGGGTTAACTTTGGCATACGGAGTTCATTTCCAGTCTAA
843 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * * *
19439651 GCATACGGAGCTCATTTTCAGTCTAAGATCGGACCCGATCGAGGGTTGCAGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
19439716 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCTTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCGGAGA
** *
19439781 ACCTGACCGTTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGAAGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTG
* * * *
19439846 CAATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAGCTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19439911 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* **
19439976 GGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATGCTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* **
19440041 TGCATGCGAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** * *
19440106 ATTTTAAAAAATCTCGAACCACAAAAAGTTTC-AATAATCGTGGAAAATAAAAAACGAGTCGTCC
455 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAA-AATCGTGAAAAATAAAAAACGAGTCGTCT
* * *
19440170 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTATATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * * *
19440235 ATTGGCATGTACAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCAACGGCTTAC
584 ATTGGCACATACAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
19440300 GCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * ** * * * * * ***
19440365 GGCATGCAGAGTTCATTCGTAGTCTAAGATCAAACCGGATTGATGGTTGTGGCAGTAGGATCAAT
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGCAGCAGGATCGGC
* * * * *
19440430 AGCACGCAGAGGGTGAGCC-AGTCGATACCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGA
778 AGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * *
19440494 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAATTTATTCCTAATCTAA
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19440551 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGGGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
19440616 CTTGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATC-ATCGGAGTATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGTCGGAG
* * *
19440680 AACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGCCCAGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
*
19440745 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
19440809 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19440874 TGGGGACAGTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** *
19440939 ATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTATGGCTAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * * *
19441004 AATTTAAAAAAATC-CTGAATCGTAAAAGGTTTTGAAAATCTTGAAAAATAAAAAATGAGTCGTC
454 AATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGTC
* *
19441068 TTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTCTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * ** * *
19441132 CATTGGCACGTAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTATGGCTTG
583 CATTGGCACATACAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * * *
19441197 CGCATCCTGTCTCTCTGGCCAACATAGTGCCCGCCCGCCCACTCGCCTGCTCGTTTCGTCTGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-C-CGCCCGCTCGTTTCGTCGGTTG
* * * **
19441262 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAAGGTTACGATAGCAGGA
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTGCGGCAGCAGGA
** * * * * * * * *
19441327 TCGATAGTATGTAGACGGGGACCCTACCGATCCCCGGCTTGCGCATCTCGCCCCTTTGGTCGGCT
773 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * * * *
19441392 GAGCACTCGCATGCTCGCTTCGTGAGTTGACGTAGGCATACGGAGTTTATTCCCAGTCTAA
838 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19441453 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGACCGAGGGTTGCGGCAGGACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19441518 CTTGAGCATGT-TTCGGTGCCGTATTTTTCTTCGTCGGGG---CA---C-----CATCGTCGGAG
66 CTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCGGAG
* * *
19441571 AACCTGACCGACGGCATTGGGGTTCC-AGTGATCGGGGGCGCTGGGGGGGGTGTGCGCACATGAT
130 AACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGC--CGGGGGGTGTGCGCACATGAT
* *
19441635 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCAAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
19441700 CACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCTAGTAGCCATTAAAGTGTATGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
** * *** * * * * ** * *
19441765 AATTACGG-CAGTACATGC---TGGGT-------TC--GTGCA--T-GTGCTGGT-GCCGTATTT
322 AA-TGGGGACACTTTTTTCAAAT-GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
** * * * * * * * *
19441813 TTCTTCGT-CGGGGC-AC---CAT-CACCGGAGCATCGTCGGAGAACC-TGATCGGCGG-C---A
385 TT-TT-GTGCATGCCAACAAAAATACA-AGGATCAT-GTC----TACCAAGTTTGG-GGCCAAAA
** ** *** ** *** ** ** * * ** **
19441867 ----TT--G----GGTTTCCAGCGATCGGGGGTCGGGAAGGGTGTGCG--CAT-GTG--ATGTGC
441 CTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGT-TTCGAAAATCGTGAAAAATAA
* *** * * * * * * * * *** * **** *
19441917 GATGGGTGCTGGTACTTGGCCCTTATA-TTGGCCCCCTATCCCTCATCAAACC-TTG-A-GAACT
505 AAAACGAG-TCGT-CTT-GCCATGAAACTT--CACGCGAAGGCTTAAGGGACCATTGTATGAATT
* * * *
19441978 CAC-ACCCAGTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGC-CAGTAGC---CATTAA-A-G
565 TACAAGCCA--T-AA-A-AA--TG-G------CA---TTG--GCACA-TA-CAAAAATGAAGATG
* *** ******** * *** * * *** * *
19442036 TGTCTAAAATGGGGACACTTTTTTAAAAT-GGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
609 TGCCT-AAA--CCCAC-CTACCACCCTATCGATC-C-ACGGCTTG--CGCATCCCGTCTCT--CT
******* * ** ********** ** ** **** * * * *
19442100 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACTC
664 GGCCGGCGTAGTGCCCGCCCGCCCGCCCGC-TCG-TTTCGTC-GGTTGGCTT-AGG-C-ATAC-G
*** * **** * * * * * ** ** * *
19442165 CTTTTGA-AAAAATTTTAAAAAATCCCAAACC--ACAAAAAGTT-TTG-A--A-AATCGTG-A-A
722 GAGTTCATTCCCAGTCT--AAGAT--CAGACCGGAC-GAGGGTTGCGGCAGCAGGATCG-GCAGC
*** ***** ** * * * ** * * * *** * * ** **
19442220 AAATAGAAAACAAGTCG-TCTAGCCATGAAACTT-CACGTGAAG-GCTTAAAGGGCC-ATTGTAT
781 ACGCAGAGGGGGACCCGACCGATCCCCG--GCTTGCGCATCCCGCCCCT--CTGGCCGGCTG-A-
****** * * **** * * ** * * ** *
19442281 GAATTTACAAGC-CATAAAAATGGAATTGGCACATAGAAATATGAAGATGTGCCTAAACCCA-CC
840 GCGCCCGCACGCTCGT-TTCGTGG-GTT-G-ACTTAGGCATACG--GA-GT-TC-ATTCCCAGTC
19442344 TACCA
896 TA--A
* * * * * * *
19442349 CCGTATCGATCCACGG-CTTGCGCATCCTGTCTCTCTGCTGGCGTAGTGCTCGCTCACCCGCCCG
1 --G---C-AT--ACGGAGTT---CA---T-TC-C-CAG-T--C-TA-AGATCG--GACCAGACCG
*** * * *** * * *
19442413 CTTGTTCCGTC-GGTTA-GCTTAGGCATACGGAGTTCAT-TCCCAGTCTAAGATTGAACCGGACT
42 AGGGTTGCGGCAGCACATGC-TGGGC-T-CGG-G--CATGT----G-CT--G-GTG--CCGCA-T
***** * * ** * * * * * **
19442475 GAGGGTT-G-CGGCAGTAGGATCG--GCAACATGCAG-AGGGGGA-CTCGATCTATCCCCGGC-T
90 TTTTCTTCGTCGG-GGCACCATCGCTGGAGCAT-C-GTCGGAGAACCT-GA-C---CGACGGCAT
** * * ** * * * * ** *
19442533 TGCGCATCCCGCCCCTC----TGGCCGGCTGAGCGCCCGCACACTCG-T-TTCG-TGGGTTGACT
147 TG-GGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACA-T-GATGTGCGATGGG-TG-C-
* ** * *** * *
19442591 TAGGTA-TACGG-AGTT-CATT----CCC-AGTCTAACATCAGACC-GGACTG-ACGGTTGCGGT
205 T-GGTACT-TGGCCCTTATATTGGCCCCCTA-TCCCTCATCAAACCTCGA--GAAC---T-C---
*** **** * * **** * * * *
19442646 AGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTACTTCATCG-GGCCAGCATCGTCA-
258 A-CACCCCCT--TAAAGAGCA--T--T--TG-AG-ATTTTACAGGTTTGCTGCCAG--TAGCCAT
* * * * ***** ** ****** * * *
19442709 GAGAACCTGATC-GACGGCATTGGGGTTC-CGGCGATCAGAGGGGTCGGGGGGTATGCGCACATG
310 TA-AA-GTG-TCTGA----AATGGGG-ACACTTTTTTCA-AATGGTCACAAAATCT-TGTACA--
* *** * * * * ** *
19442772 GTGTGCGA-TAGGT-GCTGGTACTTGTCCCTTATAGTTGCCCCCTATCCCTCATCAAACCT-CGA
363 CT-T-CGAGTTTTTAGCT-G-AATT-T---TT-TTG-TG----C-AT-GC-CAACAAAAATACAA
* *** * *** **** * * * ***
19442834 GAACTCACACCTCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA--TTAAAA
411 GGA-TCATGTCTAC-C--A-AG--TTTG-G---GGCCAAAACTCCTTCC-GAAAAAATTTTAAAA
* ** ** * ** ** * * *** * *** * *
19442897 TATCT-GAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTTTAGTTTTTAG-C
464 AATCTCG-AACCGTAAAAAGTTTCGAAAATCGTGA-AAAA--TAAAAAACGAGTCG-TCTT-GCC
** * **** * * * * ** *** *
19442960 -TGAATTTTTTGTTC-CTGCCAACAAAAATACAAGGATCACGTCTAAAAAGTTT-GGGGTCA-AA
523 ATGAA-----ACTTCAC-G-CGA-AGGCTTA-AGGGACCA-TTGTATGAA-TTTACAAGCCATAA
* * * * ** ** ** ** * *
19443021 ACA---CCTT--C-CA-A-AAAAATTTTAAAAAAT-CCCGAACCACAAAAAATTTTGAAAATCAT
577 AAATGGCATTGGCACATACAAAAA--TGAAGATGTGCCTAAACC-C-----A-CCT-ACCACCCT
* * * ** * ** * *
19443077 GAAAAATAGAAAACGACTGGTCTTGC-CATGAAAC-T-TCAC-GTGAAGGCTTAAGGGACCACTG
632 -----ATCG--ATCCAC-GG-CTTGCGCAT--CCCGTCTCTCTG-GCCGGCGT-AGTG-CC-C-G
*** **** ** * **** * ** * * **
19443138 TATGAATTTACAAGC-CATAAAAAT-GGCATTGGCACGTAGAAATATGAAGTGTGCCTAAACCCA
681 CCCG--CCCGCCCGCTCGT-TTCGTCGG--TTGG--CTTAGGCATACGGAGT-T--C-ATTCCCA
* ** * ** * * * * * ** * ** *
19443201 -CCTACCAGCCTATC-GATCCACGGCTTGC-GCATCCCGTCTCCCTGGCCGGCGTAGCGC-CCGC
735 GTCTAAGATCAGACCGGA-CGA-GGGTTGCGGCA-GCAGGAT--C-GG-CAGC--A-CGCAGAGG
** ** * ** * * **** * * * ** *
19443262 TCG-CCCGTTCGTTTCGTCAGTTGGCTTACGCAT-ACGGAGTTCAT-TCCTAGTCT-A-AGATCA
790 GGGACCCGACCG-ATC--C--CCGGCTTGCGCATCCCGCCCCTC-TGGCC--GGCTGAGCGCCCG
* ** * * ** ** ** *
19443322 AAC-CT-G-ACCGAGGGTTG-CGGTA-GCA-A--GA--TCGGTAGCACGTAGAG
847 CACGCTCGTTTCGTGGGTTGAC-TTAGGCATACGGAGTTCATTCCCA-GTCTAA
*** * * * * * ** ** *** * * * * * *
19443366 GGGGACCCGA--CCGATCCCCGGCCTGCGCATCCCACCCCTCTGGCAGGCTAAG-GGTCTGTACG
1 GCATA-CGGAGTTC-ATTCCCAGTCTAAG-ATCGGACCAGAC-CG-AGGGT-TGCGG-CAGCACA
* ** * * * * * ** * *
19443428 TTC-GTTTCTTGGG--T-TGACGTAGGCAT-ACGGAGTTCATTC-CCAGTC---TAAGCAT-AC-
59 TGCTG-GGCTCGGGCATGTG-C-T-GG--TGCCGCA-TT-TTTCTTC-GTCGGGGCACCATCGCT
** * * * * ***
19443482 GGAGTTCATTCCCAGTCTAAG-ATC-GAACCGAAC--CA--AGGGTTGCGACAGCA-CATGCTCG
115 GGAG--CA-T--C-GTCGGAGAACCTG-ACCG-ACGGCATTGGGGTTCCGAC-G-ATC-GGGGGG
* ** * * * * *
19443540 GCTCGAGCATGTGCTGGTGT-CGCA-TTTTTCTTC-ATCGGGTCACCATCGT-C--GGACC--AT
169 GC-CG-G---G-G--GGTGTGCGCACATGATGTGCGAT-GGGT--GC-TGGTACTTGGCCCTTAT
* *** * ****** ***** *** * ** **
19443597 CGTTGGAGAACCTGA-CCGGCGGCATTGGGGTTCCGACG-A-TCAGGGGGCC--GGGGGGTGTGC
222 -ATTGG-CCCCCT-ATCC--C-TCATCAAACCT-CGA-GAACTCACACCCCCTTAAAGAGCATTT
* * * * ** * * * * * * **** **** ***
19443657 GCAAATGATGTGCGATGG-GTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCCTCATCAAA
279 G-AGAT--TTTAC-A-GGTTTGCTGCCA-GTAGCCATTAAAGT-GTCTGAAATGGGGACA-CTTT
** ** *** ** * * * * ** *
19443720 CCTCAAGA-ACTCACAACCCCTTAAAGACCATTTGAGATTTTA-C--AAGTTTGCTG-CCAGTAG
336 TTTCAA-ATGGTCACAAAATCTTGTACA-C-TTCGAGTTTTTAGCTGAATTTTTTTGTGCA-T-G
** ** * * ** * *
19443780 CCATTAAAGTGTCTAAAATGGGGA-CACT-TTTTTCAA--AT-GGTCACAAAATCTTGTACACTT
396 CCAACAAA---AATACAA---GGATCA-TGTCTACCAAGTTTGGGGC-CAAAA-C---T-C-CTT
*** ** * * **
19443840 CCAGTTTCTAGCTGAATTTTTTGTGCACGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG
447 CC-G-----A----AAAAATTT-T--------A-AAAAAT-C-TCGAAC-CG--TAAAAAGTTT-
* *
19443905 GGGCCAAAACTCCTTTTGAAAAAATTTAAAAAAATCTCGAATATCAAAAAGTTTCAAAAATCGTG
486 ---CGAAAA-T-C--GTG-AAAAA--T-AAAAAA---CG----------AG---------TC--G
* * * ** *
19443970 AAAAATATAAAATGAGTCATCTTGCCATGAAACTTCACATGAAGGTTTAAGGGACCATTGTATGA
516 -----TCT----T--G-C--CATG--A-AA--CTTCACGCGAAGGCTTAAGGGACCATTGTATGA
* *
19444035 ATTTACAAGCCATAAAAATGGCATTGGCAC--ACAAAAATAAGAAGATGTGCCTAAACACACCTT
562 ATTTACAAGCCATAAAAATGGCATTGGCACATACAAAAAT--GAAGATGTGCCTAAACCCACCTA
* * *** **
19444098 CCACCCTATCGATCCATGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGCATCCGCCCGCTTGC
625 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * *
19444163 CCACTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACC
690 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-C
* ** * * * * * *
19444228 AAGCATTGCGGTAGTAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTG-TCAA
754 GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * * * * *
19444292 CCCGCCCCTCTGGTCGGCTGAGCGCCCGTACGCTCGTTTTGTGAGTTAACTTAGGCATACAGAGT
819 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
19444357 TCATTCCCAGTCTAA
884 TCATTCCCAGTCTAA
* *
19444372 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19444437 CTCAGGCATGTGGTGGTGCCACATTTTT-TTCGTTGGGGCACCATCGCTGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCGGAGA
* * ** * *
19444501 ACCTGACTGACGGCATTGGGTTTCCGGTGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
19444566 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19444631 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
19444696 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATT-GAGTTTTTAGCTGAATTTTTTTG
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTG
* *
19444760 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
19444825 ATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCATG-AAAA-AAAAAATGAGTCGTCTT
455 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
* * *
19444888 GCCGTGAAA-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCA
520 GCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
19444952 TTGG--CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACAGCTTG
585 TTGGCACATACA-AAA-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
19445015 CGCATCCCGTCTCTCTGGCCGGCATCGTGCCTGCCCGCCCGCCAGCCAGCTCATTTCGTCGGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-C--CC-GCTCGTTTCGTCGGTTG
* * ** *
19445080 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGGCAACAGGA
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGCAGCAGGA
* * * * * * * * *
19445145 TCGACAGCATGTA-AGGGGGACCCGGCCGATCGCCAGCTTTCACATCCCG-CCCTTTCGGCCGGC
773 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT-GGCCGGC
* * *
19445208 TGAGCGCCCGCACGCTTGTTTCGTGTGTTGACTTAGGCATACGGCGTTCATTCCCAGTCTAA
837 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19445270 GCATATGGAGTGCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19445335 CTCGGGCATGTACTGCTGTCGCATTTTTCTTCGTCGGGTCACCATCG-TCGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGTCGGAG
* * * * *
19445399 AACCTGATCGACGGCATTGGGGTTCTGACAATC-GGGGGGCAGGGGGGTGTGTGCGGACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGG-GTGTGCGCACATGATG
* * * *
19445463 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAATCTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
19445528 ACACCCCCTTAATGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
19445593 ATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
19445658 TGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTCGGCCCAAAACTCCTTTCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
19445723 AAATTTTAAAAAATCTCGAATCGT-AAAAGTTTCGAGAATCGTGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGTC
*
19445787 TTGCCATGAAACTTCACGCGTAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
19445852 CATTGGCACATAGAAATATGAAGATGTGTCTAAACCCACCTATCACACTATCGATCCACGGCTTG
583 CATTGGCACATACAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
19445917 CGCATCCCGTCTCTCTGGCTGGCGTAATGCCTGCCCGTCCG--C-C-CGTTTCGTCGGTTGGCTT
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * ** * * * * * *
19445978 AGGCATACAGAGTTCATTCCCAGTCCAAGATTGGACCAGATGAAGGGTTACAGCACCAAGATCGG
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACG-AGGGTTGCGGCAGCAGGATCGG
* * * * * * *** * *
19446043 TAGCACGTAGAAGGGGA-CCTAGCCGATCCCCGGCTTGCGTATCCCACCCCTCTCATCAGCTGGG
777 CAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
19446107 CACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGATTTTATTCCCAGTCTAA
841 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
19446165 GCATACGGAGTTCATTCCTAGTC-AAGGATCAAATCAGACTGAGTGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAA-GATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
** * ** * * *
19446229 GCTCAAGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGACGAAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCGGAG
** **
19446294 AACCTGACCGACGGCATTGGGGTTCTAACGATC-GGGGGGTTGAGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGT
* * *
19446358 GCGATGGGTGCTGGTATTTGGCCCTTACATTGGCCCCCTCTCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
19446423 CACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
19446488 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
19446553 GTGTAGGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGTGCAAAAAATCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
19446618 AATTTTAAAAAATCCCGAACAGCAAAAAGTTTTGAAAATTGTGAAAAATAAAAAACGAGTCGTCT
454 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGTCT
* * *
19446683 TGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATG-ATTTACAAGCCATGAAAATGGC
519 TGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
19446747 ATTGG--CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCTCGGCTT
584 ATTGGCACATACA-AAA-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
19446810 ACGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGACCGCTTGCCCGCTCGTTTCATCGGTT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC-C--GCCCGCTCGTTTCGTCGGTT
* * *
19446875 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTACGGCAGCAGG
708 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTGCGGCAGCAGG
* * * * * * * *
19446940 ATCGGCAGCACACAGAGGGGGACCCGACGGATCCCCGGCGTACGCATCCTGCCCTTCTTGCCAGC
772 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
19447005 TGAGCGCCCGCACGCTCGATTCGAGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
837 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
19447067 GCATACGGAGTTCATTCCCAATCAAAGATCGGACTGGACCAAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * ** *
19447132 CTCATGCATGTGTTGGTGTCGCATTTTTCTTCACCGGGGCACCATCG-TCGGAGCATCGGCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGTCGGAG
* * * *
19447196 AACCTGACCGACAGCATTGGGGTTCCGACGAT-TGGGGGGCCGGGGGGTGTGCGCATATGATGTA
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
19447260 AGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGACAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
19447325 AACCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCTAGTAGTCATTAAAGTGTCCGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19447390 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * ** *
19447455 TGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTTAAAACTCCTTCTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
19447520 ATTTAAAAAAATC-CTGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAATCGTCT
455 ATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGTCT
* * *
19447584 TGCCATGAAACTTCACGGGAAGGCATAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
19447649 ATTGG--CATGCAGAAATATGAAGATGTTCCCAAACCCACGTA-CACCCTATCGATCCAAGGCTT
584 ATTGGCACATACA-AAA-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
19447711 GCGCATCCGGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
19447772 TAGGCATATGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACTAAGGGTTGCGGTAGTAGGATC
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGAC-GAGGGTTGCGGCAGCAGGATC
** * * * *
19447836 GGCAGCACGCAGAGGGGGATGCGGCCGAT-CCTGGCTTGCGCATCCCACCCCTCTGGCCGGTTGA
775 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
19447900 GCGCCTGCACGCTCGTTTCGTGGGTTGACTTGGGCACACGAAGTTCATTCCCAGTCTAA
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
19447959 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTATATTGGACCAGACC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG----------ATC------GGACCAGACC
* * * * * *
19448024 GAGGCTTGCGGCAACACATGCTGGGCACGAGCATGTGCTAGCGCCGC--TTTT-TTC-T------
41 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * *
19448079 -TCA-C-C-GGAGCATCGCCGGAGAACCTGACC-AGCGGCATTGGGGTTCCGACGATCGAGGGAG
106 ACCATCGCTGGAGCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGG
*
19448139 CCGACAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCC
170 CCG---GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
19448203 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTAC
232 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
19448268 TGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
297 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
** * *
19448333 ACTTCGAGTTTTTAATTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTATACCAA
362 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAA
* * *
19448398 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACTGTAAAAAGTTTC-AAAC
427 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAA-
* * * **
19448462 ATCATGAAAAATAGAAAACGAGTCGTCGTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
491 ATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATT
* *
19448527 GTATGAATTTACAAGCCATAAAAATGGCATTGG--CATGCAGAAATATGAAGATGTGCCTAAGCC
556 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACATACA-AAA-ATGAAGATGTGCCTAAACC
19448590 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGACCGCCC
619 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCC
* * * *
19448655 GCCCGCCGGCCCGCTCGTTTCGTCGGTAGGCTTAGGCATACAGAGTTCATTCCCAGTCCAAGATC
680 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
19448720 AGACCAGACCGAGGGTTACGGCAGCAGGATGGGCAGCATGCAGAGTGGGACCCGATCGATCCCCA
745 AGACCGGA-CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * * * * *
19448785 GCTTGTGAATCCCGCCCCTCTGGCCGACTGAGCTCTCGCACGCTCATTTCGTGGGTTGACTTAGG
809 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
** **
19448850 CATACAAAGTTCATTCCTTGTCTAA
874 CATACGGAGTTCATTCCCAGTCTAA
* *** * *
19448875 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCAAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
19448940 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTC-ACTGGGGCACCAT--C----G---C--CGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCTGGAGCATCGTCGGAG
* *
19448993 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCTGGGGGGTGTGTGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
19449057 C-AGTGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCC
195 CGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
19449121 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19449186 TGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
19449251 GTGCATGCCCAA-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
389 GTGCATG-CCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
19449315 ACATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGTC
** * * *
19449380 TTGCCATGAAACTTCACATGAAGACTTAAGGGAACATTGTATGAATGTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
19449445 CATTGG--CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
583 CATTGGCACATACA-AAA-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
19449508 TGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCGCCCGCCCGC-CGTTTCGTCTGTTGGC
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * * *
19449572 TTGGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTGGCAGCAACAGGATC
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTGCGGCAGCAGGATC
* * * * * *
19449637 GACAGCATGCAAAGGGGGACCCGATCGATCCCCGTCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
775 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * * *
19449702 GCGCCCGCACGCTCATTTCATGGGTTGACTTAGGTATACAGAGTTTATTCCTAGTCTAA
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
19449761 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * *
19449826 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCAGTGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCGGAGA
* * * *
19449891 ACTTGACTGACGGCATAGGGGTTCCGACGATC-GGGGGGCCGGGTGGGGGTGTGTGCACATGATG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--G-GGGGGTGTGCGCACATGATG
* * *
19449955 TGCGATGGGTGCTGGTACTTGGCCCTCATATTGG-CCCCTATCTCTCATCAAACCTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
19450019 GCACCCCTTTATAA-AGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGA
258 ACACCCCCTTA-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
19450083 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
19450148 TTGTGCTTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCATCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * * *
19450213 AAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCCTTAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGT
* *
19450278 CTTGCCATGAATCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
19450343 GCATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACTCACCTGCCACCCTATCGATCCATGGT
582 GCATTGGCA--CATACAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
19450406 TTGCGCATCCCGTCTCTCTGACCGACGTAATGCCCGTCCGCCCGCCCGCCCTTTCATTTCGTCGG
645 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG--C--TCGTTTCGTCGG
* * ** ** *
19450471 TTGGCTTAGGCATATGGAGTTCATTCCTAGTCTGTGATTGGACCGGACCGAGGGTTGTGGCAGCA
706 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGCAGCA
* * * * * *
19450536 GGATCGGTAGCACGTAAAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCA
770 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
19450601 GTTGAGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19450665 GTATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C----A--G-AC----C
* * * * * * * * *
19450730 TGAGGGTTGTGACAGCACATGCTGGGCTTGGGCATATGTTGGTGCCACATTTTTTTTCATCAGGG
41 -GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * *
19450795 CACCATCG-TCGGAACATCATCGAAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGT
105 CACCATCGCT-GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* * * *
19450859 GCCAGGGGGTGTGCACATATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTA
169 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
19450924 TCCCTTATCAAACCTCGAGAACTCACA-CCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTG
234 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
19450988 CTAGTAGCCATTAAAGTGTCTGAAATGGGGACA
299 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
19451021 TAAAATCTTG
Statistics
Matches: 10976, Mismatches: 2201, Indels: 1689
0.74 0.15 0.11
Matches are distributed among these distances:
856 22 0.00
857 412 0.04
861 2 0.00
862 5 0.00
863 7 0.00
864 13 0.00
865 10 0.00
866 26 0.00
867 7 0.00
868 3 0.00
869 2 0.00
870 5 0.00
871 1 0.00
872 3 0.00
873 115 0.01
874 63 0.01
875 12 0.00
876 6 0.00
877 3 0.00
878 17 0.00
879 15 0.00
880 13 0.00
881 7 0.00
882 12 0.00
883 259 0.02
884 86 0.01
885 201 0.02
886 290 0.03
887 44 0.00
888 37 0.00
889 241 0.02
890 52 0.00
891 536 0.05
892 169 0.02
893 219 0.02
894 874 0.08
895 356 0.03
896 16 0.00
897 83 0.01
898 370 0.03
899 834 0.08
900 1189 0.11
901 482 0.04
902 891 0.08
903 85 0.01
904 706 0.06
905 8 0.00
906 383 0.03
907 86 0.01
908 1 0.00
909 3 0.00
910 4 0.00
911 6 0.00
912 2 0.00
913 1 0.00
914 5 0.00
915 109 0.01
916 105 0.01
917 49 0.00
918 8 0.00
919 14 0.00
920 1 0.00
921 1 0.00
922 1 0.00
923 3 0.00
924 1 0.00
925 4 0.00
927 1 0.00
928 116 0.01
929 30 0.00
930 103 0.01
931 10 0.00
932 6 0.00
933 3 0.00
935 2 0.00
937 2 0.00
938 20 0.00
939 1 0.00
940 6 0.00
941 20 0.00
942 20 0.00
943 7 0.00
944 8 0.00
945 4 0.00
946 16 0.00
947 1 0.00
948 9 0.00
950 1 0.00
952 9 0.00
953 2 0.00
954 3 0.00
955 9 0.00
956 10 0.00
957 14 0.00
958 5 0.00
959 7 0.00
960 7 0.00
961 7 0.00
962 4 0.00
963 3 0.00
964 2 0.00
965 6 0.00
966 1 0.00
967 8 0.00
968 2 0.00
970 1 0.00
971 3 0.00
972 3 0.00
975 5 0.00
976 4 0.00
977 10 0.00
978 5 0.00
979 7 0.00
980 12 0.00
981 14 0.00
982 13 0.00
983 21 0.00
984 16 0.00
985 19 0.00
986 34 0.00
987 31 0.00
988 21 0.00
989 21 0.00
990 18 0.00
991 14 0.00
992 15 0.00
993 32 0.00
994 20 0.00
995 13 0.00
996 11 0.00
997 20 0.00
998 30 0.00
999 24 0.00
1000 11 0.00
1001 29 0.00
1002 24 0.00
1003 19 0.00
1004 6 0.00
1005 16 0.00
1006 17 0.00
1007 12 0.00
1008 18 0.00
1009 13 0.00
1010 5 0.00
1011 12 0.00
1012 3 0.00
1013 6 0.00
1014 7 0.00
1015 7 0.00
1016 6 0.00
1017 18 0.00
1018 8 0.00
1019 22 0.00
1020 23 0.00
1021 16 0.00
1022 13 0.00
1023 14 0.00
1024 233 0.02
1025 275 0.03
1026 306 0.03
1027 257 0.02
1028 221 0.02
1029 239 0.02
1030 301 0.03
1031 177 0.02
1032 242 0.02
1033 182 0.02
1034 152 0.01
1035 112 0.01
1036 152 0.01
1037 139 0.01
1038 263 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTG
CCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACATACAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAGGGTTGCGGCAGCAGGATCGGCAGC
ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19441456 original size:26 final size:26
Alignment explanation
Indices: 19441427--19441479 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19441417 GTTGACGTAG
*
19441427 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19441453 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19441479 G
1 G
19441480 ATTGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19443479 original size:26 final size:26
Alignment explanation
Indices: 19443450--19443502 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19443440 GTTGACGTAG
19443450 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19443476 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19443502 G
1 G
19443503 ATCGAACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19444382 original size:26 final size:26
Alignment explanation
Indices: 19444346--19444398 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19444336 GTTAACTTAG
19444346 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19444372 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19444398 G
1 G
19444399 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19446731 original size:894 final size:892
Alignment explanation
Indices: 19442596--19451020 Score: 10375
Period size: 894 Copynumber: 9.4 Consensus size: 892
19442586 TGACTTAGGT
* * * * * *
19442596 ATACGGAGTTCATTCCCAGTCTAACATCAGACCGGACTGACGGTTGCGGTAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * *
19442661 CGGGCATGTGCTGGTGTCGTATTTTACTTCATC-GGG------C--C--AGCATCGTCAGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGACGGAGAAC
* * * * * *
19442715 CTGATCGACGGCATTGGGGTTCCGGCGATCAGAGGGGTCGGGGGGTATGCGCACATGGTGTGCGA
131 CTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
19442780 TAGGTGCTGGTACTTGTCCCTTATAGTT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 TGGGTGCTGGTACTTGGCCCTTATA-TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
19442844 CTCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATATCTGAAATGG
259 C-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGG
* ** *
19442909 GGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTTTAGTTTTTAGCTGAA-TTTTTTGTT
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * ** * * *
19442973 CCTGCCAACAAAAATACAAGGATCACGTCTAAAAAGTTTGGGGTCAAAACACCTTCCAAAAAAAT
388 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* ** * *
19443038 TTTAAAAAATCCCGAACCA-CAAAAAATTTTGAAAATCATGAAAAATAGAAAACGACTGGTCTTG
453 TTTAAAAAATCCCGAA-CAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
19443102 CCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
19443167 TGGCACGTAGAAATATGAAG-TGTGCCTAAACCCACCTACCAGCCTATCGATCCACGGCTTGCGC
582 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * ** * *
19443231 ATCCCGTCTCCCTGGCCGGCGTAGCGCCCGCTCGCCCGTTCGTTTCGTCAGTTGGCTTACGCATA
647 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTTCGTCGGTTGGCTTAGGCATA
* ** * * * *
19443296 CGGAGTTCATTCCTAGTCTAAGATCAAACCTGACCGAGGGTTGCGGTAGCAAGATCGGTAGCACG
712 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * * * * * * *
19443361 TAGAGGGGGACCCGACCGATCCCCGGCCTGCGCATCCCACCCCTCTGGCAGGCTAAGGGTCTGTA
777 TAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGCCA-GCTGAGCGCCCGCA
* * * *
19443426 CGTTCGTTTCTTGGGTTGACGTAGGCATACGGAGTTCATTCCCAGTCTAAGC
841 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
* * * * *
19443478 ATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGAACCAAGGGTTGCGACAGCACATGCTCGGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAG-ACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * **
19443542 TCGAGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGTCACCATCGTCGGACCATCGTTGGAGAA
65 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGACGGAGAA
* * *
19443607 CCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCAAATGATGTGCGA
130 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
19443672 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAAC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-AC
* * * *
19443737 CCCTTAAAGACCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
259 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGG
* *
19443802 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTCTAGCTGAA-TTTTTTGTGC
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * **
19443866 ACGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATT
389 ATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * * * * *
19443931 TAAAAAAATCTCGAATATCAAAAAGTTTCAAAAATCGTGAAAAATATAAAATGAGTCATCTTGCC
454 TTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
19443996 ATGAAACTTCACATGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * * * * *
19444061 GCACACAAAAATAAGAAGATGTGCCTAAACACACCTTCCACCCTATCGATCCATGGCTTGCGCAT
584 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* ** * * *
19444126 CCCATCTCTCTGGCCGGCGTAGCATCCGCCCGCTTGCCCACTCGTTTTGTCGGTTGGCTTAGGCA
649 CCCGTCTCTCTGGCCGGCGTAG--T--GCCCGCCCGCCCGCCCGTTTCGTCGGTTGGCTTAGGCA
* * * * ** * * *
19444191 TACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGCATTGCGGTAGTAGGATCGACAGCA
710 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * *
19444256 CGTAGAGGGGGACCCGACCGATCCCCGGCTTG-TCAACCCGCCCCTCTGGTCGGCTGAGCGCCCG
775 CGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT-GCCAGCTGAGCGCCCG
* * * *
19444320 TACGCTCGTTTTGTGAGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
839 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
* * * *
19444374 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAACACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * *
19444439 CAGGCATGTGGTGGTGCCACATTTTT-TTCGTTGGGGCACCATCG-CTGGAGCATCGTCGGAGAA
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC-GGAGCATCGACGGAGAA
* * ** *
19444502 CCTGACTGACGGCATTGGGTTTCCGGTGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCG
130 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCG
*
19444567 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-
*
19444632 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGG
19444697 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATT-GAGTTTTTAGCTGAATTTTTTTGT
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGT
*
19444761 GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
387 GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
19444826 TTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAA-A-AAAATGAGTCGTCTTG
452 TTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
19444889 CCGTGAAA-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
19444953 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACAGCTTGCGC
582 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
19445018 ATCCCGTCTCTCTGGCCGGCATCGTGCCTGCCCGCCCGCCAGCCAGCTCATTTCGTCGGTTGGCT
647 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-C--CC-G----TTTCGTCGGTTGGCT
** *
19445083 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGGCAACAGGATCG
704 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCG
* * * * * * * * * *
19445148 ACAGCATGTA-AGGGGGACCCGGCCGATCGCCAGCTTTCACATCCCGCCCTTTCGGCCGGCTGAG
769 GCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC-CTCTGCCAGCTGAG
* * * *
19445212 CGCCCGCACGCTTGTTTCGTGTGTTGACTTAGGCATACGGCGTTCATTCCCAGTCTAAGC
833 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
* * * *
19445272 ATATGGAGTGCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTAGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * *
19445337 CGGGCATGTACTGCTGTCGCATTTTTCTTCGTCGGGTCACCATCGTCGGAGCATCGCCGGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGACGGAGAAC
* * * * * *
19445402 CTGATCGACGGCATTGGGGTTCTGACAATCGGGGGGCAGGGGGGTGTGTGCGGACATGATGTGTG
131 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC-CGGGGG-GTGTGCGCACATGATGTGCG
* * *
19445467 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAATCTTGAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-
* * *
19445532 CCCCTTAATGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGG
*
19445597 GGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
19445662 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTCGGCCCAAAACTCCTTTCGAAAAAAT
388 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * *
19445727 TTTAAAAAATCTCGAATC-G-TAAAAGTTTCGAGAATCGTGAAAAATAGAAAACGAGTCGTCTTG
453 TTTAAAAAATCCCGAA-CAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
19445790 CCATGAAACTTCACGCGTAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*** * * *
19445855 TGGCACATAGAAATATGAAGATGTGTCTAAACCCACCTATCACACTATCGATCCACGGCTTGCGC
582 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
19445920 ATCCCGTCTCTCTGGCTGGCGTAATGCCTGCCCGTCCGCCCGTTTCGTCGGTTGGCTTAGGCATA
647 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * * * *
19445985 CAGAGTTCATTCCCAGTCCAAGATTGGACCAGA-TGAAGGGTTACAGCACCAAGATCGGTAGCAC
712 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG-AGGGTTGCGGCAGCAGGATCGGCAGCAC
* * * * * *
19446049 GTAGAAGGGGA-CCTAGCCGATCCCCGGCTTGCGTATCCCACCCCTCT-CATCAGCTGGGCACCC
776 GTAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGC--CAGCTGAGCGCCC
* * *
19446112 GCACGCTCGTTTCATGGGTTGACTTAGGCATACAGATTTTATTCCCAGTCTAAGC
838 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
* * * *
19446167 ATACGGAGTTCATTCCTAGTC-AAGGATCAAATCAGACTGAGTGTTGCGGCAGCACATGCTGGGC
1 ATACGGAGTTCATTCCCAGTCTAA-GATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
** * * * *
19446231 TCAAGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGACGAAGAA
65 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGACGGAGAA
** **
19446296 CCTGACCGACGGCATTGGGGTTCTAACGATCGGGGGGTTGAGGGGGTGTGCGCACATGATGTGCG
130 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCG
* * *
19446361 ATGGGTGCTGGTATTTGGCCCTTACATTGGCCCCCTCTCCCTCATCAAACCTCGAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
19446426 CCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGG
259 CCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGG
19446491 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * * *
19446556 TAGGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGTGCAAAAAATCCTTCCGAAAAAAT
388 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
** ** *
19446621 TTTAAAAAATCCCGAACAGCAAAAAGTTTTGAAAATTGTGAAAAATAAAAAACGAGTCGTCTTGC
453 TTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
19446686 CATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATG-ATTTACAAGCCATGAAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
19446750 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCTCGGCTTACGCA
583 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
19446815 TCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGACCGCTTGCCCGCTCGTTTCATCGGTTGGCTT
648 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC-C--G--C-C-CGTTTCGTCGGTTGGCTT
* * * *
19446880 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTACGGCAGCAGGATCGG
705 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGG
** * * * * *
19446945 CAGCACACAGAGGGGGACCCGACGGATCCCCGGCGTACGCATCCTGCCCTTCTTGCCAGCTGAGC
770 CAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC-TGCCAGCTGAGC
* * * *
19447010 GCCCGCACGCTCGATTCGAGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGC
834 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
* * * * * *
19447069 ATACGGAGTTCATTCCCAATCAAAGATCGGA-CTGGACCAAGGGTTGTGGCAGCACATGCTGGGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATC-AGACCGAGGGTTGCGGCAGCACATGCTGGGC
** * * * *
19447133 TCATGCATGTGTTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGGCGGAGAA
65 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGACGGAGAA
* * * **
19447198 CCTGACCGACAGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCATATGATGTAAGA
130 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
19447263 TGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGACAACTCACAAC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-AC
* * *
19447328 CCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCTAGTAGTCATTAAAGTGTCCGAAATGGG
259 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGG
* *
19447393 GACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTGC
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * ** *
19447458 ACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTTAAAACTCCTTCTGAAAAAATT
389 ATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * * *
19447523 TAAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAATCGTCTTGCC
454 TTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
19447588 ATGAAACTTCACGGGAAGGCATAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
19447653 GCATGCAGAAATATGAAGATGTTCCCAAACCCACGTA-CACCCTATCGATCCAAGGCTTGCGCAT
584 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
19447717 CCGGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATG
649 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTTCGTCGGTTGGCTTAGGCATACG
* * ** * * *
19447782 GAGTTCATTCCCAGTCTAAGATCGAACCGGACTAAGGGTTGCGGTAGTAGGATCGGCAGCACGCA
714 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTA
** * * * * * *
19447847 GAGGGGGATGCGGCCGAT-CCTGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCTGCACG
779 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT-GCCAGCTGAGCGCCCGCACG
* *
19447911 CTCGTTTCGTGGGTTGACTTGGGCACAC-GAAGTTCATTCCCAGTCTAAGC
843 CTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGC
*
19447961 ATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTATATTGGACCAGACCGA
1 ATACGGAGTTCATTCCCAGTCT----A-A--GA--TCA-----GATC---A---GACC-GA--G-
* * * * * *
19448026 GGCTTGCGGCAACACATGCTGGGCACGAGCATGTGCTAGCGCCGC--TTTT-TTC-T-------T
42 GG-TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCAC
* *
19448080 CA-C--CGGAGCATCGCCGGAGAACCTGACC-AGCGGCATTGGGGTTCCGACGATCGAGGGAGCC
106 CATCGTCGGAGCATCGACGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCG-GGGGGCC
*
19448141 GACAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTA
169 G---GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
19448205 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTG
231 TCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
19448270 CTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
295 CTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
** *
19448335 TTCGAGTTTTTAATTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTATACCAAGT
360 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGT
* * * *
19448400 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAACATC
425 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATC
* *
19448465 ATGAAAAATAGAAAACGAGTCGTCGTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
490 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
19448530 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAGCCCACCT
555 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
19448595 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGACCGCCCGCCCG
620 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG--C-
* * * * *
19448660 CCGGCCCGCTCGTTTCGTCGGTAGGCTTAGGCATACAGAGTTCATTCCCAGTCCAAGATCAGACC
678 CC-GCCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * * *
19448725 AGACCGAGGGTTACGGCAGCAGGATGGGCAGCATGCAGAGTGGGACCCGATCGATCCCCAGCTTG
742 AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * * *
19448790 TGAATCCCGCCCCTCTGGCC-GACTGAGCTCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
807 CGCATCCCGCCCCTCT-GCCAG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* **
19448854 CAAAGTTCATTCCTTGTCTAAGC
870 CAGAGTTCATTCCCAGTCTAAGC
** * *
19448877 ATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCAAGGGTTGCGGCAGCACATGCTAGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
*
19448942 TGGGCATGTGCTGGTGCCGCATTTTTCTTCA-CTGGGGCACCA---TC---G---C--CGGAGAA
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCACCATCGTCGGAGCATCGACGGAGAA
* *
19448995 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCTGGGGGGTGTGTGCACATGATGTGC-A
130 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
19449059 GTGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCCCAC
195 -TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-
* *
19449124 CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGG
* * *
19449189 GGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
19449254 CATGCCCAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAACAT
388 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * *
19449319 TTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
453 TTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * * *
19449384 CATGAAACTTCACATGAAGACTTAAGGGAACATTGTATGAATGTACAAGCCATAAAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
19449449 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
583 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
19449514 TCCCGTCTCTCTGGCCGGCATAGTGCCCACCCGCCCGCCCGCCGTTTCGTCTGTTGGCTTGGGCA
648 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C-CCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * * *
19449579 TATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTGGCAGCAACAGGATCGACAGCA
710 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * * * * *
19449644 TGCAAAGGGGGACCCGATCGATCCCCGTCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
775 CGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT-GCCAGCTGAGCGCCCG
* * * * *
19449709 CACGCTCATTTCATGGGTTGACTTAGGTATACAGAGTTTATTCCTAGTCTAAGC
839 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
* * * * **
19449763 ATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGCGATAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * ** * *
19449828 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATC-ACCAGTGAA
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGA-CGGAGAA
* * * *
19449892 CTTGACTGACGGCATAGGGGTTCCGACGATCGGGGGGCCGGGTGGGGGTGTGTGCACATGATGTG
130 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC--G-GGGGGTGTGCGCACATGATGTG
* * * *
19449957 CGATGGGTGCTGGTACTTGGCCCTCATATTGG-CCCCTATCTCTCATCAAACCTTGAGAACTCGC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
19450021 ACCCCTTTATAA-AGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
257 ACCCC-TTA-AAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
*
19450085 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
19450150 GTGCTTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCATCCGAAAA
385 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** * * *
19450215 AATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCCTTAAAAATAGAAAACGAGTCGTCT
450 AATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
19450280 TGCCATGAATCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
19450345 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACTCACCTGCCACCCTATCGATCCATGGTTTGC
580 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
19450410 GCATCCCGTCTCTCTGACCGACGTAATGCCCGTCCGCCCGCCCGCCCTTTCATTTCGTCGGTTGG
645 GCATCCCGTCTCTCTGGCCGGCGTAGTG--C--CCGCCCGCCCG-CC---CGTTTCGTCGGTTGG
* * ** * * *
19450475 CTTAGGCATATGGAGTTCATTCCTAGTCTGTGATTGGACCGGACCGAGGGTTGTGGCAGCAGGAT
702 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGAT
* * * *
19450540 CGGTAGCACGTAAAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCAGTTG
767 CGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT-GCCAGCTG
* * * * *
19450605 AGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGT
831 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
*
19450667 ATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTAGACTG
1 ATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A-TC----A--G-AC----C-G
* * * * * * * *
19450732 AGGGTTGTGACAGCACATGCTGGGCTTGGGCATATGTTGGTGCCACATTTTTTTTCATCAGGGCA
40 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCA
* * * *
19450797 CCATCGTCGGAACATC-ATCGAAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGTGC
105 CCATCGTCGGAGCATCGA-CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GC
* * * *
19450861 CAGGGGGTGTGCACATATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATC
168 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
19450926 CCTTATCAAACCTCGAGAACTCACACCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCTA
233 CCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTA
19450991 GTAGCCATTAAAGTGTCTGAAATGGGGACA
298 GTAGCCATTAAAGTGTCTGAAATGGGGACA
19451021 TAAAATCTTG
Statistics
Matches: 6579, Mismatches: 773, Indels: 336
0.86 0.10 0.04
Matches are distributed among these distances:
881 4 0.00
882 81 0.01
883 7 0.00
884 2 0.00
885 2 0.00
886 269 0.04
887 6 0.00
889 3 0.00
890 45 0.01
891 483 0.07
892 485 0.07
893 220 0.03
894 637 0.10
895 396 0.06
896 347 0.05
897 300 0.05
898 234 0.04
899 504 0.08
900 336 0.05
901 427 0.06
902 525 0.08
903 63 0.01
904 206 0.03
905 4 0.00
906 384 0.06
907 87 0.01
908 2 0.00
909 3 0.00
911 6 0.00
912 5 0.00
913 2 0.00
914 5 0.00
915 103 0.02
916 102 0.02
917 34 0.01
918 1 0.00
924 1 0.00
925 2 0.00
927 1 0.00
928 112 0.02
929 33 0.01
930 107 0.02
931 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGACGGAGAAC
CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGA
GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGCCAGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
Found at i:19447977 original size:26 final size:26
Alignment explanation
Indices: 19447941--19448009 Score: 120
Period size: 26 Copynumber: 2.7 Consensus size: 26
19447931 GGGCACACGA
19447941 AGTTCATTCCCAGTCTAAGCATACGG
1 AGTTCATTCCCAGTCTAAGCATACGG
*
19447967 AGTTCATTCCCAGTCTAAGCATATGG
1 AGTTCATTCCCAGTCTAAGCATACGG
*
19447993 AGTTCATTCCCAATCTA
1 AGTTCATTCCCAGTCTA
19448010 TATTGGACCA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (26 bp):
AGTTCATTCCCAGTCTAAGCATACGG
Found at i:19449777 original size:26 final size:26
Alignment explanation
Indices: 19449737--19449787 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
19449727 TGACTTAGGT
* * *
19449737 ATACAGAGTTTATTCCTAGTCTAAGC
1 ATACAGAGTTCATTCCCAATCTAAGC
*
19449763 ATACGGAGTTCATTCCCAATCTAAG
1 ATACAGAGTTCATTCCCAATCTAAG
19449788 ATCAGACCGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAATCTAAGC
Found at i:19450670 original size:26 final size:26
Alignment explanation
Indices: 19450639--19450717 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
19450629 GTTGACTTAG
19450639 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19450665 GTATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19450691 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19450717 G
1 G
19450718 ATCGAACTAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19453913 original size:26 final size:26
Alignment explanation
Indices: 19453877--19453929 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19453867 GTTGACTTAG
*
19453877 GCATACGGAGTGCATTCCTAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
* *
19453903 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
19453929 G
1 G
19453930 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTGCATTCCCAGTCTAA
Found at i:19454811 original size:26 final size:26
Alignment explanation
Indices: 19454775--19454825 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19454765 TTTGACTTAG
19454775 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
19454801 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCACAGTCTA
19454826 TGATCAGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:19455582 original size:12 final size:12
Alignment explanation
Indices: 19455561--19455592 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
19455551 CCAAGGGTTA
19455561 CGGCAGCAGGAT
1 CGGCAGCAGGAT
*
19455573 CGGCATCAGGAT
1 CGGCAGCAGGAT
19455585 CGGCAGCA
1 CGGCAGCA
19455593 CATAGAGGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.25, C:0.28, G:0.38, T:0.09
Consensus pattern (12 bp):
CGGCAGCAGGAT
Found at i:19455723 original size:26 final size:26
Alignment explanation
Indices: 19455673--19455723 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19455663 TTTGAGTTAG
* *
19455673 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCACAATCTAA
*
19455699 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATTCACAATCTA
19455724 TGATCAGATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAATCTAA
Found at i:19456008 original size:898 final size:890
Alignment explanation
Indices: 19451057--19457415 Score: 7436
Period size: 898 Copynumber: 7.2 Consensus size: 890
19451047 GCCCGCCTGT
* * * * *
19451057 CCGCCCGCTCATTTCGTCGGTTGGCTTAAGCATACGGAGTTTATTCCTAGTCTAAGATCAGACCG
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* ** ** * *
19451122 GACCGAGGGTT-G-CCCCA-ACAGGATCGGAAGCACGCAGAGGGGGACCC-AGCCGATCCCCGGC
66 GACCGAGGGTTAGAGCGGATGTAGGATCGGCAGCACACAGAGGGGGACCCGA-CCGAT-CCCGGC
* * * *
19451183 TTACGCATCCCGCCCCTCCGACCGGCTGAGCGGCCGCCCGCTCGTTTCGTTGGTTGACTTTGGCA
129 TTGCGCATCCCGCCCCT-----C-G--GAGC--CCGCGCGCTCGTTTCGTGGGTTGACTTAGGCA
* ** * * * *
19451248 TACGGAGTTCATTCCTAGTCTAAGCATATAGATTTCATTCGCAGTCTAAGATCAAACCGG-ACTG
184 TACGGAGTTCATTCATAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACCG
** * *
19451312 AGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCA
249 AGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGCCGGGGCA
* * **
19451377 CCATCGTTGGAGCATCGCCGTCGAACCTGACCGACGGCATTGGGGTT------A-C--GA----C
314 CCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGAGGGCC
** * * * **
19451429 GA-TCGGGTGTGCGCACGTGAAGTGCGATGGGTGCTGGTACTTGGCCCTTATAT-TTCCCCCATA
379 GAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTTGTACTTGGCCCTTATATAGGCCCCC-TA
*
19451492 TCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
443 TCCCTCATCAAACCTCGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
19451556 CCAGTAGCCATTAAAGTATCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
508 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * * * * *
19451621 TTTGCGTTTTTAGCTGAAGTTTTTTGTGCACGCCAACATAAATACAATGATCAGGTCTACCAAGT
573 TTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* * * * * * *
19451686 TTGGGGCTAAAACTCCTTCCAAAAAAATGTGAAAAATTCCCGAACCACAAAAAGTTTCAAAAATC
638 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATC
* *
19451751 GTGAAAAA-AGGAAAACGAGTCGTCTTGCCATGAAACTTCACATAAAGGCTTAAGGGACCATTGT
703 GTGAAAAATA-GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
19451815 ATGAATTTACAAGCCATAAAAATGGTATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACC
767 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACC
* * **
19451880 TACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGTCGGCGTAGTGCCTAC
832 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * * * * * * * **
19451939 TCGTCCGCTCGTTCCGTCAGTTGGCTTAAGCATACAGAGTTGATTCCCACTCTAAGATCAGACTG
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
** * * ** *
19452004 GACCGAGGGTT---GCGG-TAGTAGGATCGATAACACACAAAGGGGGACCCGGTCGATCCCCGAC
66 GACCGAGGGTTAGAGCGGAT-GTAGGATCGGCAGCACACAGAGGGGGACCCGACCGAT-CCCGGC
* * * * * * * * *
19452065 TTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCG---CAT--GCTCA-TT--TCAT--GG-GT
129 TTGCGCATCCCGCCCCTC-GG-AGCCCGCGCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * *
19452119 TGA--C----T-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GAACCGAGGGTTGC
192 TCATTCATAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACCGAGGGTTAC
* * * *
19452176 GGCAACACATGCTGGGCTC-GGCATGTGCTGGTG-CTGTATTTTTCTACACCGGGGCACCATCGT
257 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCT-CATTTTTCTTCGCCGGGGCACCATCGT
* * * * *
19452239 CGGAGGATCGCCAGAGAACCTGACCGGA-GGCATTAGGGTTCCGGCGATCGGGGGGGCCG-GGGG
321 CGGAGCATCGTCGGAGAACCTGACC-GACGGCATTGGGGTTCCGGCGATCGGGAGGGCCGAGGGG
* *
19452302 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTA-GCCCCCTATGCCTC
385 GGTGTGCGCACATGATGTGCGATGGGTGCTTGTACTTGGCCCTTATA-TAGGCCCCCTATCCCTC
* *
19452366 ATCAAACCTCGAGAACTA-ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAAT
449 ATCAAACCTCGAGAAC-ACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
19452430 AGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
513 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
* *
19452495 GTTTTTAGGTGAATTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCATA-TTTGG
578 GTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCA-AGTTTGG
* * *
19452558 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACC-AAAAAAATTTTCAAAAATCGTG
642 GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTT-AAAAATCGTG
* * * *
19452622 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACCTGAATGCTTAAGGGGCCATTGTCTGA
706 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * *
19452687 ATTTACAACCCATAAAAATGGCATTGGCATGC-AGAATATGAAGATGTACTTAAACCCACCTACC
771 ATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACC
* *
19452751 ACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGTCGGCGTAGTGCCCGC
836 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * * *
19452806 CCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATAAGGAGTTCATTACCAGTCTAAGATCAGATCA
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * ** *
19452871 GACCGAGGGTT-GTG-GTA-GAAGGATCGACAACACGTAGAGGGGGACTCGACCGATCCTCGGCT
66 GACCGAGGGTTAGAGCGGATGTAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCC-CGGCT
* *
19452933 TGCGCATCCCGCCCCTCTGGCCGCCTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCAT
130 TGCGCATCCCG-CCC-CT---CG---GAG--CCCGCGCGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * * * *
19452998 ACGAAGCTCATTCGTAGTCTAAGCATACAGAGTTCATTCCCAGTCTTAGATCAGACCAG-ACCAA
185 ACGGAGTTCATTCATAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACCGA
* * *
19453062 GGGTT--GTGCAACACATGCTGGGTTCGGGCATGTGCTGGTG-CTGCATTTTTCTTCGTCGGGGC
250 GGGTTACG-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCT-CATTTTTCTTCGCCGGGGC
* *
19453124 ACCA---TC---G--TC-T--GAGAACCTGACCGACGGCATTGGGGTTCCGGTGAT-GGCAGGGG
313 ACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGA-GGG
* * *
19453177 CC--GGGGGGTGTGCGCACATGATGTGTGATGGGTG-TTGATACTTGGCCCTTAGATTGGCCCCC
377 CCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTTG-TACTTGGCCCTTATATAGGCCCCC
* * *
19453239 TATCCCTCATCAAACCTCGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACCGGTTTGC
441 TATCCCTCATCAAACCTCGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* **
19453304 TGCCAGTACCCATTAAAGTGTCTGAAATGGCAACACTTTTTTCAAATGGTCACAAAATCTTGTAC
506 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
19453369 ACTTTGGGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAAAAGGATGACGTCTACAAA
571 ACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * * * *
19453434 GTTTGGAGCCAAAAATCCTTCCAAAAAAATTTAAAAAAATCTCGAACCACAAAAAGTTTTGAAAA
636 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAA
* * * *
19453499 TCATGAAAAATAGAAAACGAGTCATCTTGCCGTGAAACTTCACGTGACGGCTTAAGGGACCATTG
701 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * *
19453564 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCAC
766 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCAC
* * * * * *
19453629 CTACCACCCTATCGATCCATGACTTGCGGATCTCGTCTCTCTGGCCGACGTAGTACCCGC
831 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * * * * * *
19453689 CTGCCCGCTCATTTTGTTGATTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATCAGACCG
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * **
19453754 GACCGAGGGTTACAGC--A-GTAGGATTGGCAGCATGCAGAGGGGGACCCGACCGATCCCCGGCT
66 GACCGAGGGTTAGAGCGGATGTAGGATCGGCAGCACACAGAGGGGGACCCGACCGAT-CCCGGCT
* * * *
19453816 TGTGCATCCCGCCCCTCTGGCCGACTAAGCGCCTGCACGCTCATTTTGTGGGTTGACTTAGGCAT
130 TGCGCATCCCGCCCCTC--G--G----AGC-CC-GCGCGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * * *
19453881 ACGGAGTGCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGG-ACTGA
185 ACGGAGTTCATTCATAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACCGA
* * * * *
19453945 GGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACAATTTTCTTCACCGGGGCAC
250 GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGCCGGGGCAC
* * * **
19454010 CATCGTCGGAGCATC-ACTGGAGAACCTGACCGACGGTATTAGGGTTTTGGCGATCGGG-GTGGC
315 CATCGTCGGAGCATCGTC-GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGAG-GGC
* * * *
19454073 C--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCTTA
378 CGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTTGTACTTGGCCCTTATATAGGCCCCCTA
* *
19454136 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTG
443 TCCCTCATCAAACCTCGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
19454201 CCAGTAGCAATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTATACAC
508 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
19454266 TTCGAGTTTTTAGGTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGT
573 TTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* * * *
19454331 TTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATA
638 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATC
* * * * * * *
19454396 ATGAAAAATAGAGAACGAGTTGTCTTGCCATGAAACTTCATGTGAAGGCATAAAGGTCCATTGTA
703 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
19454461 TGAATTTACAA-CCATAAAAATGGCATTTGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
768 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
19454525 ACCACCCTATCGATCCACGGATTACGCATCCCGTCTCTTTGACCGGTGTAGTGCCCGTC
833 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C
* * * * *
19454584 GACCTGTCCGCTCGTTTCGTCAGTTGGCTTAGGCGTACAGAGTTTATTCCCAGTCTAAGATCAGA
1 --CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * ** *
19454649 CCAGACTGAGGGTT---GC-GATAGTCGGATCGGCAGCATGCAGAGGGGGACCCGACTGATCCCC
63 CCAGACCGAGGGTTAGAGCGGAT-GTAGGATCGGCAGCACACAGAGGGGGACCCGACCGAT-CCC
* * * * *
19454710 GACTTGCGCATCCTGCCCCTCTGGCCGGCAAAGCGCCCGCACACTCGTTTCGTGGTTTGACTTAG
126 GGCTTGCGCATCCCG-CCC-CT---CGG---A--GCCCGCGCGCTCGTTTCGTGGGTTGACTTAG
* * *
19454775 GCATACGGAGTTCATTCACAGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCAGA-CTGAA
181 GCATACGGAGTTCATTCATAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAA
* * * * *
19454839 TCGAGGGTTACGGCAGCACATGTTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
246 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGCCGGG
** *
19454904 GCACCATCGTCGGAGCATATTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGAGG
311 GCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGAGG
* *
19454969 GCCGAGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTTGTACTTGGCCCGTATATAGGCCCCC
376 GCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTTGTACTTGGCCCTTATATAGGCCCCC
* * *
19455034 TATCCCTCATCAAACCTCAAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGT
441 TATCCCTCATCAAACCTCGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
19455099 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTAC
506 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
19455164 ACTTTGAGTTTTTAG-TAGAATTTTTTTATGCATGCCAAGAAAAATACAAGGGTCACGTCTACCA
571 ACTTTGAGTTTTTAGCT-GAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * * *
19455228 AGTTTGGGGCCAAAACTCCTTCGAAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAA
635 AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAA
* *
19455293 ATTGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATT
700 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
19455358 GTATGAATTTACAAGCCTTAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCA
765 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCA
* *
19455423 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCAC
830 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * *
19455484 CCACCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * *
19455549 GACCAAGGGTTACGGCAGCAGGATCGGCATCAGGATCGGCAGCACATAGAGGGGGACCCGACTGT
66 GACCGAGGGTTA--G-AGC-GGAT--G--T-AGGATCGGCAGCACACAGAGGGGGACCCGACCGA
* * * * *
19455614 TCCCTAGCTTGCGCATCCTGCCCCTCGG-GCCCGCGCGCTTGTTTCGTGGTTTGAGTTAGGCATA
122 TCCC-GGCTTGCGCATCCCGCCCCTCGGAGCCCGCGCGCTCGTTTCGTGGGTTGACTTAGGCATA
* * *
19455678 CGGAGTTCATTCATAGTCTAAGCATACGGAGTTCATTCCCAATCTATGATCAGA-TGGAACCGAG
186 CGGAGTTCATTCATAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACCGAG
* * * * *
19455742 GGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGAGCCTCATTTTTCTTCGTCGAGGCACG
251 GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGCCGGGGCACC
** * *
19455807 ATCGTTAGAGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTTTCGGCGATCGGGAGGGCCGA
316 ATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGAGGGCCGA
* *
19455872 GGGGGGTTGTGCGCACATGATGTGCAATGGGTGCTTGTACTTGGCCCTTATATAGGCCCCCTTTC
381 GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTTGTACTTGGCCCTTATATAGGCCCCCTATC
* *
19455937 CCTCATCAAACCTCGAGAACACACA-CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTGCC
445 CCTCATCAAACCTCGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
19456001 AGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
510 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
19456066 TGAGTTTTTAGCTAAATTTTTTTATGCATGCCAAAAAAAATACAAGGGTCACGTCTACCAAGTTT
575 TGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * *
19456131 GGGGCCAAAACTCCATCCAAAAACAATTTTAAAAAA-CCCAAACCGCAAAAAGTTTCAAAAATTG
640 GGGGCCAAAACTCCTTCCAAAAA-AATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCG
*
19456195 TGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
704 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
19456260 GAATTTACAAGCCTTAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTA
769 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
19456325 CCACCCTATCGATCTACGACTTACGCATCCCGTCTCTCTGGTCGGCATAGTGCCCGC
834 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * *
19456382 CCGCCCACTCGTTTTGTCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACC
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACC
* * *
19456446 AGACTGAGGGTTATG-GC--A-GTAGGATCGGCAGCTCACAGAGGAGGACCCGACCGATCCCCGG
65 AGACCGAGGGTTA-GAGCGGATGTAGGATCGGCAGCACACAGAGGGGGACCCGACCGAT-CCCGG
* * * *
19456507 CTTGTGCATCCTGCCCCTCTGGCCGGTTAAGCGCC-CGCACATTCGTTTCGTGGGTTGACTTAGA
128 CTTGCGCATCCCG-CCC-CT---CGG---AGC-CCGCGCGC--TCGTTTCGTGGGTTGACTTAGG
* * * *
19456571 CATACGGAGTTCATTCACAATCTAAGCATACGGAGTTCATTCCTAGTCTAAAATCAGACCGG-AC
182 CATACGGAGTTCATTCATAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAAC
* * * *
19456635 CGAGGGTTACGACAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCGCATTTTTCTTCGCCAGGG
247 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGCCGGGG
* * *
19456700 ---CA----C----CATCGTCGGAGAACCTGACCGGCGACATTTGGGTTCCGGCGATCGGGAGGG
312 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGAGGG
* * *
19456754 CCGAGGGGGGGTGTGCACACATGATGTGCAATGGGTGCTTGTACTTGGCCCTTATATAGGCCCTC
377 CCGA-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTTGTACTTGGCCCTTATATAGGCCCCC
* * * * *
19456819 TTTCCCTCATCAAACCTCAAAAACACACACCCCCTTAAAGAGCAATTGAGATTTTACAAGTTTGC
441 TATCCCTCATCAAACCTCGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
19456884 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTAC
506 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
19456948 ACTTTGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAAAAAAAATACAAGGGTCACGTCTACCAA
571 ACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* *
19457012 GTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAA
636 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAA
* * *
19457077 TCGTGAAAAATAGAAAATGAGTCGTCTTGCAATGAAACTTCATGTGAAGGCTTAAGGGACCATTG
701 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
19457142 TATGAATTTACAAGCCATAAAAATGGCATTGGCA--CATAGAAATATGAAGAGGTGCATAAACCC
766 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACCC
* * *
19457205 ACCTACCACCCTATCGATCCACGGATTGCGCATCCCGTCTCCCTGGCCGACGTAGTGCCCGC
829 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * * *
19457267 CCGCCCTCCCACTCGCTCATTTCGTCGGTTGGCTTAGGCATATGAACTTCATTCCCAGTCTAAGA
1 CCG------C-C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* ** * * * * * **
19457332 TTAGACCAGATTGAGGGTT---GCGGCA-GCAGGATCAGTAGCACACAGAGGGTGACCTGGTCGA
58 TCAGACCAGACCGAGGGTTAGAGCGG-ATGTAGGATCGGCAGCACACAGAGGGGGACCCGACCGA
19457393 TCCTCGGCTTGCGCATCCCGCCC
122 TCC-CGGCTTGCGCATCCCGCCC
19457416 TTTGGCTGGC
Statistics
Matches: 4761, Mismatches: 546, Indels: 330
0.84 0.10 0.06
Matches are distributed among these distances:
854 1 0.00
855 71 0.01
856 61 0.01
857 1 0.00
861 2 0.00
862 1 0.00
863 4 0.00
864 3 0.00
866 5 0.00
867 194 0.04
868 251 0.05
869 132 0.03
871 3 0.00
872 1 0.00
873 1 0.00
874 8 0.00
875 7 0.00
876 1 0.00
877 2 0.00
878 3 0.00
879 2 0.00
880 7 0.00
881 205 0.04
882 325 0.07
883 286 0.06
884 66 0.01
885 271 0.06
886 222 0.05
887 84 0.02
888 3 0.00
889 1 0.00
890 5 0.00
891 5 0.00
892 27 0.01
893 182 0.04
894 100 0.02
895 402 0.08
896 7 0.00
897 197 0.04
898 980 0.21
899 102 0.02
900 368 0.08
901 100 0.02
903 3 0.00
904 3 0.00
905 3 0.00
906 1 0.00
907 2 0.00
908 7 0.00
909 43 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
GACCGAGGGTTAGAGCGGATGTAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCGGCTT
GCGCATCCCGCCCCTCGGAGCCCGCGCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCATAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACCGAGGGTTACGGCA
GCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGCCGGGGCACCATCGTCGGAG
CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGAGGGCCGAGGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTTGTACTTGGCCCTTATATAGGCCCCCTATCCCTCATCAAAC
CTCGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
CTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
TCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
Found at i:19457619 original size:26 final size:26
Alignment explanation
Indices: 19457588--19457643 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
19457578 TGGGTTGACT
*
19457588 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
19457614 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
19457640 TAAG
1 TAAG
19457644 AACGGACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:19460809 original size:26 final size:26
Alignment explanation
Indices: 19460773--19460825 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19460763 GTTAACTTAG
* *
19460773 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19460799 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19460825 G
1 G
19460826 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19462588 original size:26 final size:26
Alignment explanation
Indices: 19462559--19462609 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
19462549 TGACTTAGGA
*
19462559 ATACGGAGTGCATTACTAGTCTAAGC
1 ATACGGAGTGCATTACCAGTCTAAGC
* * *
19462585 ATACGTAGTTCATTCCCAGTCTAAG
1 ATACGGAGTGCATTACCAGTCTAAG
19462610 ATTGGATTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTGCATTACCAGTCTAAGC
Found at i:19463140 original size:898 final size:898
Alignment explanation
Indices: 19459886--19468436 Score: 10166
Period size: 898 Copynumber: 9.5 Consensus size: 898
19459876 GTTGACTTAG
* * * * *
19459886 GCATACAGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19459951 CTCGAGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCCGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
** * *
19460016 ACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGGCTAGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGGCTGGGGGGTGTGCGCACATGATGTG
** *
19460081 CGATGGGTGCTGGTGCTTGGCTATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19460146 ACCCCCTTAAAGAGCATTTGAGATTTTGCTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19460211 -GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATATTATTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTT
*
19460275 GTGCATGCCCAACAAAAATACAAGGA-CACGTCTACCCAAGTTTGGGGCCCAAAAACTCCTTCCG
389 GTGCATG-CCAAAAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGG-CC-AAAACTCCTTCC-
* * * * *
19460339 AAAAAAATTTT-AAAAATCCCTAA-CTCAAAAAG-TGTCAAAATCGTG-AAAATAGAAAAACGAT
449 -AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAG-AAAACGA-
* *
19460400 GTCATCTTGCCATGAAACTTCACAAC-AAGGCTTAAGGAACCATTTGTGATGAATTTACAAGCCA
511 GTCGTCTTGCCATGAAACTTCAC-ACGAAGGCTTAAGGGACCA-TTGT-ATGAATTTACAAGCCA
* ** * * *
19460464 T-AAAATGGCATTTGGAACACAGAAATGTGATGATTTGCCTAAAAACCCACCTACCAACCCTATC
573 TAAAAATGGCA-TTGGCATGCAGAAATATGAAGATGTGCCT--AAACCCACCTACC-ACCCTATC
* *
19460528 GATCCAACGGCTTGCGCATCCCGCCTCTCTGGCCGATGTAGT-GCTCG-CC-TCCGCCCGCTATC
634 GATCC-ACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGGC-CGCCCGCCCGCCCGC--TC
*
19460590 GTTTCGTCGGTTGGCTTAGGCATACGGAGGTTCATTCCCAGTCTGAAG-TCAGGACTAGGACCGA
695 GTTTCGTCGGTTGGCTTAGGCATACGGA-GTTCATTCCCAGTCT-AAGATC-GGA-TCGGACCGA
* ** * * * * *
19460654 TGGGTTG-CGTTGCAGGAATTGAACAGCAATGCAGAGGGAGA-CC-GCCGATCCCTGGCTTGTGG
756 -GGGTTGTGGCAGCAGG-ATCG-ACAGC-ACGCAGAGGGGGACCCGGCCGATCCCCGGCTTG-CG
** * * *
19460716 CATCCCGCCCCTCTGGCTAGCTGAGCGCCCACACGCTCGTTTCGTGGGTTAACTTAGGCATATGG
816 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
19460781 AGTTCATTCCTAGTCTAA
881 AGTTCATTCCTAGTCTAA
* * ** **
19460799 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCAAGGGTTATGAAAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * ** *
19460864 CTCGGGCTTGTGCTGGTGCCACTTTTTTCTTCATC-GGGCACCATCGTTGAAGTATTGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
*
19460928 ACCTGACCGGCGGCATTGGGGTTCC-AGCGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATG
131 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGG-C-TGGGGGGTGTGCGCACATGATG
* * *
19460992 TGTGATGGGTGCTAGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
193 TGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
19461057 ACACCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
19461122 ATGGGGGACACTTTTTTCAAGTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
323 AT-GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* ** * * *
19461187 TTTTGCATGCCAAAAAAAATACAACAATCACATTTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
387 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AA
* * * * ** *
19461252 AAAATTTAAAAAAATCTCGAACCACAAAATGTTTCGAAAATCATGAAAATTAGAAAACGAGTCGT
451 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
19461317 CTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTTTGAATTTGCAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
19461382 GCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
19461447 GCGCATCCCGCCTCTCTGGTCGACATACTGGCCGCCCACCCGCCCGCTCGTTT--TCGGTTGGCT
646 GCGCATCCCGCCTCTCTGGCCGACGTAGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * **
19461510 TAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGCAGCAGCAGGATCG
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCG
* * * * *
19461575 ACAGCCCGTAGAGGGGGACCCGGCCGATCCCCTGCTTGCGCATCCCGACCCTCTGGCCGGCTGAA
776 ACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
19461640 CGCCTGCACGCTCGTTTCGTCGGTTGACTTAGGCATACAGACTTCATTCCTAGTCTAA
841 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * * * * *
19461698 GCATACGTAGTTCATTCCTAGTCTAAGATTGGATCGGACCAAGGGTTACAGCAGCACATGCTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * *
19461763 CTCAAGCATGTGCTGGTGCCGCAGTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * *
19461828 ACTTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGC----CGG-G-G-G-----G-TGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGC
* * * *
19461880 GATGGGTGCTTGTGCTTAGCCCTTATATTGGCCCCTTATCCCTCTTCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
19461945 CCTCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTTTGAAAT-
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
19462009 GGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** ** * *
19462074 GCATGCCAAAAACAATACAACAATCACGTCTACCAAGTTTGATGCCAAAACACCGTTCGAAAAAA
391 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAA
* * * * * * * *
19462139 TTTTAAAAAATCCCGAACCACAAAAACTTTCAAAAATCGTGAAAAATAGAGAACCATTTGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
19462204 CCATGAAACTTCACACGAAGGCTTAAGAGACCATTGTATTAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * * * *
19462269 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACAAACCTATCGACCCACAGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * *
19462334 ATACCGCCTCTCTGGTCGACGTACTGGCCTCTCGCCCGCCCGCTCATTTCGTCAGTTGGCTTAGG
650 ATCCCGCCTCTCTGGCCGACGTAGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * *
19462399 CATACGAAGTTCATTCCCAATCTAAGATCGGATCGGACCAATGGTTGTAGCAGCAGGATCGACAG
715 CATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
* ** *
19462464 CCCGCAGAGGGGGACCCGGCCGATCCCCTACTTGCGCATCCCGACCCTCTGGCCGGCTGAGCGCC
780 CACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * * * *
19462529 CGTACGCTCCTTTCATGGGTTGACTTAGGAATACGGAGTGCATTACTAGTCTAA
845 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * *
19462583 GCATACGTAGTTCATTCCCAGTCTAAGATTGGATTGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19462648 CTCAGGCATGTGCTGGTGCCGC-TTTTCTCTTCGCCAGGGCACCATCGTCGGAGCATCACCGGTG
66 CTCGGGCATGTGCTGGTGCCGCATTTT-TCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * *
19462712 AACCTGACCGGCGGCATTAGGGTTCGGACGATTGGGGGGGCTGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTG
* *
19462777 CGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
19462842 GCCCCCTTAAAAAGCATTTCAAATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19462907 -GGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** *
19462971 TGCATGCCAAAAAAAACT-CAAGGATCATGTCTACCAAGTTTGGTTCCAAAATTCCTTCCAAAAT
390 TGCATGCCAAAAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA-
* * *
19463035 AATTTTAAAAAATCCCGAACCGCAAAAGGTTTTGAAAATCATGAAAAATAGAAAACGAGTTGTCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
19463100 TGCCATGAAACTTCACACGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGT
518 TGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
19463165 ATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCAACCTATCGA-CCTACGGCTTG
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-ACGGCTTG
* * * * * * * * *
19463229 CGTATCCCGCCTCTATGGTCGGCGTACTGACTGCTCGCCCGCCCGCCCGTTTCGTCGGTTGGCTT
647 CGCATCCCGCCTCTCTGGCCGACGTAGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * *
19463294 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGTA-CTGGACCAAGGGTTGTGGCAGCAAGATCG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGTGGCAGCAGGATCG
* * * * *
19463358 GCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACGCTTCTGGCCGGCTGAG
776 ACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
** * * * * * * *
19463423 CGCCCATACGGTCATTTCCTGGGTTGCCTTAGGCATACAGAGTTCATTCCCAGTCTGA
841 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * **
19463481 GCATACGGACTTCATTCCCAGTCTAAGATCGGA-CTGGACTGAGGGTTGCACCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
19463545 GCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCACGGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * * * * * *
19463610 AACCCGACCGACGGCATTGGGGTTTCGATGATCGGGGGCGCCAGGGGGGTTTGCACACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GGCTGGGGGGTGTGCGCACATGATGT
* *
19463675 GCGATGGGTGCTAGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
19463740 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
19463805 TGGGGACACTTTTTTCAAATGATCAC-AAATCTTGTACACTTTGAGTTTTTAGTTGAATTGTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * ** *
19463869 CTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCTGAAACTCCTTCTGAAAA
389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAA
* * * *
19463934 AATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGGGTCGTC
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCA-TGAAAAATAGAAAACGAGTCGTC
19463998 TTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
19464063 TATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTTCCAACCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
19464128 CGCATCCCGCCTATCTGGCC-AGCGTAGT--------GCCCACCCGCTTGTTTTGTCGATTGGCT
647 CGCATCCCGCCTCTCTGGCCGA-CGTAGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC-
* * * * * * * * *
19464184 TTA-GCATACGGAGATAATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGAAACAAGATC
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATC
* * * * ** ** * * * * *
19464248 AACAGCACGCAAAGGGGGTCTCAACTAATCCCCGACTTGCGCATCCTGCCCCTCTAGACGGTTGA
775 GACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
19464313 GCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAGGCATAC
840 GCGCCCGCACGCTCGTTTCGTG-G--G---T-----T-----G---A---C---T-TAGGCATAC
*
19464378 GGAGTTCATTCCTAGTGTAA
879 GGAGTTCATTCCTAGTCTAA
* * *
19464398 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCGGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19464463 CTTGGGCATGTCCTGGTGCCACATTTTTCTTTGACGGGGCACCA---TC---G-----CCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * *
19464517 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGAGCTGGGGGGGTGTGCACACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCT-GGGGGGTGTGCGCACATGATGTG
* * *
19464582 CAATGGGTGCTTGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19464647 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19464712 GGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
19464777 TGCAAGCCAAAAAAAATACAAGGATCATGTCTACCAGGTTTAGGGCCAAAAATCCTTCCGAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
* *
19464842 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAGTAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
19464907 ACCATGAAACTTCAAACGAAGGCTTAAGGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * **
19464972 TTGGCATGCAAAAATAAGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
19465037 CATCCCGCATCTCTGGCCGACGTAAT-GCTCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTGA
649 CATCCCGCCTCTCTGGCCGACGTAGTGGC-CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * ***
19465101 GGCATACAGAGGTCATTCCCAGTCTAAGATCTGA-CTAGATTAAGGGTTGTGGCAGCAGGATCGA
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * *
19465165 CAGCACGTAGAGGGGGACCCGGCCAATCCCAGGCTTGCGCATCCTGCCCCTCTGGCCAGCTAAGC
777 CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
19465230 GCTCGCACGCTCGTTTCGT-GG--G---T-----T---GA---CA----TAG-----
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * ** * *
19465261 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGGCAATAGATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
19465326 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * *
19465391 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTACGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGC
*
19465456 GATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
196 GATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
19465521 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
19465586 AGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
19465651 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTTCGAATAAA
391 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-CTTCCAAAAAA
* ** * * * * *
19465716 TTTAAAAAAATCTTGAACCGTAAAAACTTTTGAAAATCATGAAAAATAGAAAATGATTCGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * **
19465781 CTATGAAACTTCACACAAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAAAT
520 CCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
19465846 TGGCATGCAGAAATATGAAGATTTGCATAAACCCACATACCACCCTATCGATCCACAGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *** * *
19465911 ATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCTGCCCGGTAGCTTGTTTCGTCGTTTGGCTTAGG
650 ATCCCGCCTCTCTGGCCGACGTAGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * ** *
19465976 CATACGGAGTTCATTCCTAGTCTAAGATCGGACCGAACCAAGGGTTGTGGCAGCAAGATCGGTAA
715 CATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
* * * * ** * * * *
19466041 CACACAGAGGGGGACCCAGCTGATCCCCTGCTTGCGCATGTCACCCCCCCGGCTGGCTGAGCGCC
780 CACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
*
19466106 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAA
845 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* *
19466160 GCAAACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
19466225 CTCAGGCATGTGCTGATGCCGCATTTTTCTTC-ACCGGGCACCATCGCCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * * *
19466289 ACCTGACTGACAGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATATG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGGCTGGGGGGTGTGCGCACATGATGTG
* *
19466354 CGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCTAGAACTCAC
195 CGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
19466419 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19466484 GGGGACA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
* * * *
19466548 TTGCATGCC-AAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTGCAAAAA
389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CCAAAA
* * *
19466612 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAACAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
19466677 TGCCATGAAACTTCAAACGAAGGCTTAAGGGTCCATTGCATAAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
19466742 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCATGGCTTAC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
19466807 GCATCCCACCTATCTGGCCGGCGTAGTGCCCGCCGGCCCGCCCACTCGTTTCGTCGGTTGGCTTA
648 GCATCCCGCCTCTCTGGCCGACGTAGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * ** * * * * ** *
19466872 GGTATACGGAGTTAATTCCTAGTCTAAGATTAGACCAGACTGAGGGTTGCGGCAATAGGATCTAC
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * * *
19466937 AGCACGCAGAGGGGGACTCGACTGATCCTCGACTTGCGCATCCCGCCCCTTTGGTCGGCTGAGCA
778 AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
19467002 CCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * * * *
19467058 GCATACGAAGTTCATTCCCAGTCTAAGATTGGATAGGACCGAGGGTTGTGGCAGCAAATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
19467123 CTTGGGCATTTGCTGGTGCCGCATTTTTCTTCGACGGGGCACCATCGTCGGAG-A--A-C-TTG-
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
** *
19467182 ACC-GA---G-GGCATTAAGGTTCCGACGATCGGGGGAGCTGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGC
* * *
19467242 GATGGGAGCTGGTGCTTGGCCCTTATATTGG-CCCCTCTCCCATGAATC-AACCTCGAG-ACTCA
196 GATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCC-T-CATCAAACCTCGAGAACTCA
*
19467304 CACCCCCCTTAAAGAGCATATGAAGATTTTACAGGTTTGCTGGGGCCAGTAGCCATTAAAGTGGT
259 CA-CCCCCTTAAAGAGCATTTG-AGATTTTACAGGTTTGCT---GCCAGTAGCCATTAAAGT-GT
* *
19467369 CTGGAAATAGGGACACTTTTTTC-AATGGTC-CACAAATCTTGTACACTTTGAGTTTTTATGCTT
318 CT-GAAATGGGGACACTTTTTTCAAATGGTCACA-AAATCTTGTACACTTCGAGTTTTTA-GC-T
* * * * *
19467432 GAATTTTTTTATGGCATGCCTAAAAAAAAAATAAAAGGATCATGTCTACCTAGTTT-GGGCCGCA
379 GAATTTTTTTGT-GCATGCC---AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AA
* ** * *
19467496 AACTTCTTCCCAAAAAAATTTTAAAAAATCTTGAACCGGCAAAAAGTTTAAAAAAAATAATGAAA
439 AACTCCTT-CC-AAAAAATTTTAAAAAATCCCGAACC-GCAAAAAGTTT--TAAAAATCATG-AA
* * *
19467561 AAATAGAAAACGAGTCGTCTTGGCTATGAAACTTCACA-AAAGGCTTAAGGGACCGTTGTATGAA
498 AAATAGAAAACGAGTCGTCTT-GCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAA
* *
19467625 TTAACAAGCCATAAAAAATGGCATTGGCACGCAAGAAATATGAAGGATG-GCCTAAACCCACCTA
562 TTTACAAGCCAT-AAAAATGGCATTGGCATGC-AGAAATATGAA-GATGTGCCTAAACCCACCTA
* * * * * *
19467689 CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGTCGACGTGGAGCCCGCCCGCCCGT
624 CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGGCCGCCCGCCCGC
* * * * * * * * *
19467754 CGGTTCATTCCGTCAGTTGGCTTAGGCATACGGAGTTGACTCCCAGTCTAAGATTGGATCGGACT
689 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACC
* ** * * * * * *
19467819 GAGGGTTGCGAAAGTAAGATCGACAGCATGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGTAT
754 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT
** * *
19467884 CTTGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTGGTTTCGTGGGTTGACTTAGGCATACGGA-T
819 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* *
19467948 TGCAATCCCAGTCTAA
884 T-CATTCCTAGTCTAA
* * * * * * *
19467964 GCATACAGAGTTCTTTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGTGACAGCACATACTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** **
19468029 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTC-ACTGGGTACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
** * * *
19468093 ACCTGACCGGTAGCATTGGGGTTCCAACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGC
19468158 GATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
19468223 TCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGGTGGCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
19468288 GGGACACTATTTTCAAATGGTCAAAAAATCTTGTACCCTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
19468353 GAATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAG
391 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAA
*
19468418 TTTTAAAAAATCCCAAACC
455 TTTTAAAAAATCCCGAACC
19468437 TTAAAAATAC
Statistics
Matches: 6598, Mismatches: 855, Indels: 379
0.84 0.11 0.05
Matches are distributed among these distances:
863 96 0.01
866 2 0.00
868 3 0.00
869 1 0.00
872 2 0.00
873 604 0.09
874 49 0.01
875 2 0.00
876 1 0.00
878 1 0.00
879 1 0.00
883 332 0.05
884 7 0.00
885 450 0.07
886 16 0.00
887 87 0.01
888 40 0.01
889 2 0.00
890 3 0.00
891 157 0.02
892 15 0.00
893 46 0.01
894 23 0.00
895 12 0.00
896 1 0.00
897 15 0.00
898 1383 0.21
899 916 0.14
900 134 0.02
901 24 0.00
902 6 0.00
903 25 0.00
904 98 0.01
905 87 0.01
906 588 0.09
907 308 0.05
908 29 0.00
909 13 0.00
910 67 0.01
911 82 0.01
912 116 0.02
913 271 0.04
914 30 0.00
915 213 0.03
916 105 0.02
917 134 0.02
918 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGCCTCTCTGGCCGACGTAGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGC
ACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
Found at i:19463485 original size:26 final size:26
Alignment explanation
Indices: 19463455--19463504 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19463445 GTTGCCTTAG
*
19463455 GCATACAGAGTTCATTCCCAGTCTGA
1 GCATACAGACTTCATTCCCAGTCTGA
*
19463481 GCATACGGACTTCATTCCCAGTCT
1 GCATACAGACTTCATTCCCAGTCT
19463505 AAGATCGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAGTCTGA
Found at i:19464379 original size:26 final size:26
Alignment explanation
Indices: 19464343--19464422 Score: 133
Period size: 26 Copynumber: 3.1 Consensus size: 26
19464333 TGAGTTGACT
19464343 TAGGCATACGGAGTTCATTCCTAGTC
1 TAGGCATACGGAGTTCATTCCTAGTC
*
19464369 TAGGCATACGGAGTTCATTCCTAGTG
1 TAGGCATACGGAGTTCATTCCTAGTC
* *
19464395 TAAGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCTAGTC
19464421 TA
1 TA
19464423 AGATTGGACC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCTAGTC
Found at i:19467062 original size:26 final size:26
Alignment explanation
Indices: 19467032--19467084 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19467022 GTTGACTTAG
*
19467032 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19467058 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19467084 G
1 G
19467085 ATTGGATAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19468759 original size:171 final size:171
Alignment explanation
Indices: 19468474--19468799 Score: 422
Period size: 171 Copynumber: 1.9 Consensus size: 171
19468464 CACGTAGTGC
* *
19468474 CCGCCCGCCCGCCCCCTCGTTTCGTCTATTGGCTTAGCCATACGAAGTTCATTCCCAGTCTAAGA
1 CCGCCCGCCCGCCCCCTAGTTTCGTCGATTGGCTTAGCCATACGAAGTTCATTCCCAGTCTAAGA
** * * *
19468539 TCAGATCAGATTGAGGGTTACGGTAGTAGGATCGACAGCACACAGAGGGGGACCCGGCCGAT-CC
66 TCAGATCAGACCGAGGGTTACGGCAATAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCC
19468603 TCGACTTGTGCATCCCGCCACTCTGGCCGGTTGACCGCCCGA
131 T-GACTTGTGCATCCCGCCACTCTGGCCGGTTGACCGCCCGA
** * * * * *
19468645 CCGCCCGCCCGCCCGTTATTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGA
1 CCGCCCGCCCGCCCCCTAGTTTCGTCGATTGGCTTAGCCATACGAAGTTCATTCCCAGTCTAAGA
* * **
19468710 TCAGATCGGACCGAGGTTTGTGGCAATAGGATC-AGCAGCACACAGAGGGGGACCCGACCGATCC
66 TCAGATCAGACCGAGGGTTACGGCAATAGGATCGA-CAGCACACAGAGGGGGACCCGACCGATCC
** * *
19468774 CTGGTTTGTGCATCCTGCCCCTCTGG
130 CTGACTTGTGCATCCCGCCACTCTGG
19468800 TCGACTGAGC
Statistics
Matches: 131, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
170 1 0.01
171 127 0.97
172 3 0.02
ACGTcount: A:0.19, C:0.32, G:0.27, T:0.22
Consensus pattern (171 bp):
CCGCCCGCCCGCCCCCTAGTTTCGTCGATTGGCTTAGCCATACGAAGTTCATTCCCAGTCTAAGA
TCAGATCAGACCGAGGGTTACGGCAATAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCC
TGACTTGTGCATCCCGCCACTCTGGCCGGTTGACCGCCCGA
Found at i:19469304 original size:26 final size:26
Alignment explanation
Indices: 19469275--19469327 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19469265 TTTGACTTAG
19469275 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
19469301 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
19469327 G
1 G
19469328 ATTGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:19470207 original size:26 final size:26
Alignment explanation
Indices: 19470171--19470223 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19470161 GTTGACTTAG
*
19470171 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19470197 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19470223 G
1 G
19470224 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19470799 original size:894 final size:892
Alignment explanation
Indices: 19468843--19471841 Score: 4236
Period size: 902 Copynumber: 3.3 Consensus size: 892
19468833 TGACTTGGCG
* * * * *
19468843 AAAACACCTTCCAAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAA
1 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* * *
19468908 TAGAAAATGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTA
66 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
19468973 CAAGACATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCT
131 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * * ** *
19469038 ATCAATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGGAGTGCCCGCCCGCCCTCTAATTTT
196 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCACTCGTTTC
* * * **
19469103 GACAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAACTGAGGGTTGCAG
261 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCAG
* * * ** *
19469168 TAGCAGGATCGACAGCACATAGAGGGGAACCCA-GCCGATCCTCAACTTTC-CATCCC-ACCCCT
326 TAGCAGGATTGACAGCACGTAGAGGGG-A-CCAGGCCGATCCCCGGCTTGCGCATCCCGA-CCCT
* * * * **
19469230 CTGGTCGACTTAGCGCCCGCATGCTCGTTTCGTGCTTTGACTTAGGCATACGGAGTTCATTCCTA
388 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTA
* *
19469295 GTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACAT
453 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACAT
* * * * * *
19469360 GCTGGGCTCAGGCATGTGCTGGTGCTGCATTCTTCTTCGCTGGGGCACCATCGTCGAAGCATTGC
518 GCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTTGGGGCACCATCGCCG-AGCAATAC
* *
19469425 CGGAGAACCTAACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGTGGGGGTGTGCGCACA
582 CGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCC-G-GGGGGTGTGCGCACA
* * * *
19469490 TGTTGTGAGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
645 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
19469555 AATTCACACCCCCTCAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAATATGT
710 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA-ATGT
* * *
19469620 CTTAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAAT
774 CTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
*
19469685 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCC
839 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* *
19469739 AAAAATCCTTCCGAAAAAATTTT-AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAA
1 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* **
19469803 TAGAAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGTTTTAAGGGACCATTGTATGAATTTA
66 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
19469868 CAAGCCATAAAAAAGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
131 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
*
19469933 ATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCACTCGTTTC
196 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCACTCGTTTC
* * ** *
19469998 GTCGGTTGGCTTAGGCATACGGAGTGCATTCACAGTCTAAGATTGGACCAGACCAAGGGTTGCAG
261 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCAG
* * * *
19470063 CAGTAGGATTGACAGCACGCAGAGCGGGACCAGGCCGATCCCCGGCTTGCGCATCCCGTCCCTCT
326 TAGCAGGATTGACAGCACGTAGAG-GGGACCAGGCCGATCCCCGGCTTGCGCATCCCGACCCTCT
* * *
19470128 GGCCGGCTGAGCGCCTGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGT
390 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGT
* * * * *
19470193 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCCCATTC
455 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGC
*
19470258 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCAGAGCAATACCG
520 TGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTTGGGGCACCATCGCC-GAGCAATACCG
* * **
19470323 GAGAACCTAACTGGCGACATTGGGGTTCCGACGATCAGGGGGGCCGGAGGGGTGTATGCACATGA
584 GAGAACCTAACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGG-GGGGTGTGCGCACATGA
*
19470388 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCCTCAAACCTCGAGAAC
648 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
** *
19470453 TCATGCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATGTCTAA
713 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATGTCTAA
* *
19470518 AACGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
778 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* **
19470583 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGGT
843 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
*
19470633 AAAGCTCCTTCCGAAAAAATTTT-AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
1 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
*
19470697 TAGAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
66 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
19470762 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCGAGACCCACCTACCACCCT
131 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* *
19470827 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCACCCACCCGCCGGCCCG
196 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCA--C-CC-GCCCA
* *
19470892 CTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAATCAAG
253 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAG
* * * * * *
19470957 GGTTGCAGTAGCAAGA-TCAGCAGCACGTAGAGGGTGACCCGGTCAATCCCTGGCTTGCGCATCC
318 GGTTGCAGTAGCAGGATTGA-CAGCACGTAGAGGG-GACCAGGCCGATCCCCGGCTTGCGCATCC
* * * *
19471021 TGACCCTCTAGCCGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTC
381 CGACCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * *
19471086 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGAC
446 ATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGC
* * * * *
19471151 AGCACATGCTGGGCTTGGGCATGTACGGGTGCTGCATTTTTCCTT-GTCGGGTCACCATCGCCGG
511 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTT-CTTCGTTGGGGCACCATCGCC-G
* * * *
19471215 GGC-ATAACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCTGGGGGGTGT
574 AGCAAT-ACCGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGT
* *
19471279 GCGCACATCATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAA
638 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
19471344 CCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATT
703 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
19471409 AAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
768 AAA-TGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
19471474 GCTGAATGTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
832 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * *
19471535 AAAACACTTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTG-AAAA
1 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* * * * * *
19471599 TAGAAAACGAATCATCTTGCCACGAAAATTCATGTGAATGCTTAAGGGACCATTGTATGAATTTA
66 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
19471664 CAAGCCATAAAAATGGCATTGGC-TCGCAAAAATATGAAGATGTGCATAAACCCACCTACCAGCC
131 CAAGCCATAAAAATGGCATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
19471728 TATCGATCCATGACTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCATCCGCCC
195 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCA-------
* * *
19471793 GCTCGTTTTGTCGGTTGGCTTAGGCTTACGGAGTTCATTCCCATTCTAA
253 -CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
19471842 ACATACGGAG
Statistics
Matches: 1872, Mismatches: 202, Indels: 52
0.88 0.10 0.02
Matches are distributed among these distances:
894 348 0.19
895 428 0.23
896 247 0.13
897 1 0.00
898 7 0.00
900 1 0.00
901 139 0.07
902 663 0.35
903 38 0.02
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (892 bp):
AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCACTCGTTTC
GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCAG
TAGCAGGATTGACAGCACGTAGAGGGGACCAGGCCGATCCCCGGCTTGCGCATCCCGACCCTCTG
GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCT
GGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTTGGGGCACCATCGCCGAGCAATACCGGA
GAACCTAACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATGTCTAAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
Found at i:19471103 original size:26 final size:26
Alignment explanation
Indices: 19471073--19471125 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19471063 GTTGACTTAG
19471073 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19471099 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19471125 G
1 G
19471126 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19472750 original size:26 final size:26
Alignment explanation
Indices: 19472714--19472766 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19472704 GTTGACCTAG
19472714 GCATACAGAGTTCATT-CCAGGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
19472740 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19472766 G
1 G
19472767 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19476465 original size:26 final size:26
Alignment explanation
Indices: 19476428--19476477 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19476418 GTTGACTTAG
19476428 GCATACGAAGTTCATTCCCAGTCTCA
1 GCATACGAAGTTCATTCCCAGTCTCA
*
19476454 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATTCCCAGTCT
19476478 AAGATCGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTCA
Found at i:19477357 original size:26 final size:26
Alignment explanation
Indices: 19477327--19477379 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19477317 GTTAACTTAG
19477327 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
19477353 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19477379 G
1 G
19477380 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19477769 original size:903 final size:896
Alignment explanation
Indices: 19475565--19480680 Score: 6745
Period size: 896 Copynumber: 5.7 Consensus size: 896
19475555 GTTGACTTAC
* * ** *
19475565 GCATACGGAGTTCATTCCCAGTCCAAGATTGGACTGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
19475630 CTCAGGCTTGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCA---TC--G----CCGGAGAAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGCATACCGGAGAAC
* * * * * * * *
19475686 CTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGTCGGGTCGGTGTGCACACATGATGGGTG
131 CTGACCGGCGGCATTAGGGTTCCGACGATC-GGGGGGCCGGG-GGGTGTGCGCACATGATGTGCG
* *
19475751 ATGGGTGCTGGTACTTGGCCCTTATGTTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
19475816 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCT-AGAATG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATG
* *
19475880 GGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
**
19475945 GCATGCCAACAAAAATACAAGGATCACGTCT---AAGTTTGGGGCTGAAACTCCTTCCGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
19476007 TTTTAAAAAATCCCGAACC-CAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
453 TTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
19476070 CCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
19476135 TGGCAGGCAGAAATATAAAGATGTGCCCAAACCCACCTACCACCCTATCGATCTAGGGCTTGCGC
582 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
19476200 ATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGTCCGTCCACCCGCTCGTTTCGTCGGTTGGCT
647 ATCCCGTCTCTCTGGCCGACGTAGTG-CC-CCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCT
* * * * * *
19476265 TAGGCATACGGAGTTTAATTCCGAATCTAAGATTGGACCAGACCAAGGGTTGTGGTAGCAGGATC
710 TAGGCATACGGAG-TTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGGCAGCAGAATC
* * **
19476330 GGCAGCACGTAAAGGGGGACCCGG-CCGATCCACGGCTTGTGCATCCCGCCCCTCTGGCCAGCTG
774 GGCAGCACGTAGA-GGGGA-CCGGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCAGCTG
* * *
19476394 AGCGCCCGTAAGCTCA-TTC-TGTGGGTTGACTTAGGCATAC-GAAGTTCATTCCCAGTCTCA
837 AGCGCCCGCACGCTCATTTCATGT--GTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAA
* * * *
19476454 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCCA-TACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GACAGCACATGCTGG
* * * ***
19476518 GCTCGGGCATGTGTTGGGGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGTATTGTGGGAGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGCA-TACCGGAGA
* * * * *
19476583 ACCTGACCGGCGGCGTTGGGGTTCTGACGATCGGGGGGGCCGAGGGGTGTGCGCACA-GATGTGT
129 ACCTGACCGGCGGCATTAGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
19476647 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19476712 CCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATA
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
19476777 AGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTCCGAGTTTTTGGCTGAATGTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
19476842 GCATGCCAACAAAGATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
19476907 TTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCGGGAAAAATAGAAAACAAGTCGTCTTG
453 TTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
**
19476972 TGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
19477037 TGGCACGCAGAAATGTTAAGATGT-CCTAAGCCCACCTACCA-CCTATCGATCCACGGCTTGCGC
582 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
19477100 ATCCTGTCTCTTTAGCCGACGCAGTGCCCGCGCGCCCGTCCACCCGCTCATCTT-GTCGGTTGGC
647 ATCCCGTCTCTCTGGCCGACGTAGTGCCC-C-CGCCCGCCCACCCGCTCAT-TTCGTCGGTTGGC
* * * * * * * * *
19477164 TTAGGCATACAGAGTTTATTCCTAGTCTAAGATTGAACCAGACCGAGGGTTACGGTAGCAAAATT
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGGCAGCAGAATC
* * *
19477229 GGTAGCACGCAGAGAGGGACCGGATCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCAGCTGA
774 GGCAGCACGTAGAG-GGGACCGGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCAGCTGA
* *
19477294 GCGCCCGTACGCTCATTTCATGTGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
838 GCGCCCGCACGCTCATTTCATGTGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
19477353 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
19477418 CTGGGGCATGTGTTGGTGCTGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GAGCAT-ACCGGAGA
* * ** *
19477483 ACCTGATCGGCGACATTAGGGTTCCGGTGATCGGGCGGGCCGAGGGTGGTGTGCGTACATGATGT
129 ACCTGACCGGCGGCATTAGGGTTCCGACGATCGGG-GGGCCG-GGG-GGTGTGCGCACATGATGT
* * *
19477548 GCGATGGGTGCTGGAAC-TGTGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTAGAGAACTC
191 GCGATGGGTGCTGGTACTTG-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
19477612 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGA
255 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GA
19477676 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
319 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
19477741 TTGTGCATGCCAAAAAAAATACAAGGATCACGTATACCAAGTTTGGGACCAAAAATCCTTCCGAA
384 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** * *
19477806 AAAATTTCAAAAAATCCCGAACCGTGAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGT
449 AAAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
19477871 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCGTTGTATGAATTT-CAAGCCATAAAAATG
513 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
19477935 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
578 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
19478000 GCGCATCTCGTCTCTCTGGCC-AGCGTAGTG--CCCGCCCG----CCTGCTCATTTTGTCGGTTG
643 GCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCCCGCCCGCCCACCCGCTCATTTCGTCGGTTG
** *
19478058 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACCTAGGGTTG-GAGCAGCAG
707 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAG-ACCAAGGGTTGCG-GCAGCAG
* * * * * *
19478121 GATCGGCAGCACGTGGATGGGGAACC-GACCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGTCG
770 AATCGGCAGCACGTAGA-GGGG-ACCGGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCA
* * * * * *
19478185 GTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAGTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 GCTGAGCGCCCGCACGCTCATTTCATGTGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* ** * **
19478249 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * *
19478314 CTCGAGCATGTGCTAGTGCCGCATTTTTCTTCGCCAGGGCATCATCGTCGGAGCATCATCC-AAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GAGCAT-A-CCGGAG
*
19478378 AACCTGACCGGCGGCATTAGGGTTCCGACGATCACGGGGGCCGTGGGGGTGTGCGCACATGATGT
128 AACCTGACCGGCGGCATTAGGGTTCCGACGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGT
* * *
19478443 GTGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19478508 CACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19478573 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTGGCTGAATTGTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTT
* *
19478638 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTTCTTCCGAAA
385 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
19478703 AAATTTTAAAAAATGCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
450 AAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
19478768 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
19478833 CATTGGCATGCAGAAATATTAAGATGT-CCT-AACCCGACCTACCACCTTATCGATCCATGACTT
579 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC-ACCTACCACCCTATCGATCCACGGCTT
* *
19478896 GCGCATCCCGTCTCTCTGGCCGACGTAGTG--CCCGCCCGCCCATCCGCTCATTTCGTCGATTGG
643 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGG
* *** **
19478959 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGGGAGTGGACTGAGGGTTGC-G-A-CAG---
708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGGCAGCAGAAT
* * * *
19479018 C-AC-GCA-G-AG-GGGGACCCGG-CCGATCCCCGCCTTGCACATCCCGCTCTTC-GGCCAGCTG
773 CGGCAGCACGTAGAGGGGA-CCGGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCAGCTG
* * *
19479076 AGTGCCCACACGCTCATTTCATGTGTTGACTTAGGCATACAGAGTTAATTCCCAGTCTAA
837 AGCGCCCGCACGCTCATTTCATGTGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
19479136 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* *
19479201 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCA---TC-A-C-T---GGAGAAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGCATACCGGAGAAC
* * * * * *
19479257 CTAATCGGTGGCATTGGGGTTCCGACAATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGA
131 CTGACCGGCGGCATTAGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* ** * * *
19479322 TGGGTACTGGTACTTGGCTTTTATTTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACGCT
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
19479387 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
19479452 GATACTTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTTC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * *
19479517 CTGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* *** *
19479582 TTAAAAAATCTCTAACCATGAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGACTCGTCTTGCC
455 TTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
19479647 ATGAAACTTCACTTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** *
19479712 GCACACAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCAT
584 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
19479777 CCCGTCTCTCTGG-CAAGCGTAGTGCCCGCCTGCCC-CCCGCCCGCTCATTTCGTCGATTGGCCT
649 CCCGTCTCTCTGGCCGA-CGTAGTGCCC-CC-GCCCGCCCACCCGCTCATTTCGTCGGTTGGCTT
* * *
19479840 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGATTGTGGCAGCAGAATCGG
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGGCAGCAGAATCGG
* * *
19479905 CAGCACGTAGAGGGGAACCCGACCGATCCCCGGCTTTCACATCCCGCCCCTCTGG-CTGACTGAG
776 CAGCACGTAGAGGGG-ACCGGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCAG-CTGAG
* ** * ** * * *
19479969 CTCCCGCACAATCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTGA
839 CGCCCGCACGCTCATTTCATGTGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
19480027 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
19480092 CTCGGGCATGTGCTGGTGCCGCATGTTTCTTCATCGGAGCACCA---TC--G----CCGGAGAAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGCATACCGGAGAAC
* *
19480148 CTGACCGGCAGCATTAGGGTT-CTAGCGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGC-
131 CTGACCGGCGGCATTAGGGTTCCGA-CGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
19480211 ATTGGGTGCTGGTACTT-GCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 A-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
19480275 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19480340 GGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
19480405 GCATGCCAACTAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * * ** *
19480470 CTTAAAAAAATCCCAAGCTGTAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTG
453 TTTTAAAAAATCCGAA-CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
** * *
19480535 CCATGAAACTTCACAAGAAGGCTTGAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
19480600 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCGGCTTGTGC
582 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
19480665 ATCGCGTCTCTCTGGC
647 ATCCCGTCTCTCTGGC
19480681 TGGCGTAGAG
Statistics
Matches: 3736, Mismatches: 400, Indels: 180
0.87 0.09 0.04
Matches are distributed among these distances:
873 1 0.00
874 208 0.06
875 248 0.07
876 41 0.01
877 1 0.00
878 71 0.02
879 5 0.00
880 2 0.00
881 4 0.00
882 1 0.00
884 3 0.00
885 1 0.00
886 3 0.00
887 155 0.04
888 33 0.01
889 101 0.03
890 445 0.12
891 226 0.06
892 5 0.00
893 1 0.00
894 2 0.00
895 202 0.05
896 552 0.15
897 270 0.07
898 22 0.01
899 291 0.08
900 239 0.06
901 34 0.01
902 168 0.04
903 359 0.10
904 42 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGCATACCGGAGAAC
CTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGACGTAGTGCCCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGGCAGCAGAATCGGCAGCA
CGTAGAGGGGACCGGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCAGCTGAGCGCCCGC
ACGCTCATTTCATGTGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:19478259 original size:26 final size:26
Alignment explanation
Indices: 19478223--19478275 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19478213 GTTGAGTTAG
*
19478223 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19478249 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19478275 G
1 G
19478276 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19479146 original size:26 final size:26
Alignment explanation
Indices: 19479110--19479162 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19479100 GTTGACTTAG
19479110 GCATACAGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
* *
19479136 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
19479162 G
1 G
19479163 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:19480037 original size:26 final size:26
Alignment explanation
Indices: 19480001--19480050 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19479991 GTTGACTTAG
19480001 GCATACGGAGTTCATTCCCAGTCTGA
1 GCATACGGAGTTCATTCCCAGTCTGA
*
19480027 GCATGCGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
19480051 AAGATCGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.20, C:0.28, G:0.24, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTGA
Found at i:19481451 original size:26 final size:26
Alignment explanation
Indices: 19481415--19481467 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19481405 GTTGACTTAG
19481415 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
19481441 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
19481467 G
1 G
19481468 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:19482936 original size:829 final size:841
Alignment explanation
Indices: 19481376--19484752 Score: 3161
Period size: 902 Copynumber: 3.9 Consensus size: 841
19481366 CCCTCTGGCT
* * * ** * * * *
19481376 GACTGAGCGCCCGCA-CGCTTGTTTAATGGGTTGACTTAG-GCATACGGAGTTCATTCCCAGT-A
1 GACTAAGCGCCCGCACCACTCGTTTCGTGGGTTGACTTAGCGCACACGAAGTTCATTCCTAGTCT
* * * * * * * *
19481438 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGGCCGAGGGTTGTGACAGCAAATACT
66 TAGGCAAACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* ** * * *
19481503 GGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAG-AACCTC--
131 AGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGTCGG
* * *
19481565 ---ACC-GA-C-G-GCATTGGGGTTCCGGCAATCGGGGGG-CGGGGGG-GTGCGCACGTGATGTG
196 AGAACCTGACCGGCGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * * * *
19481621 CGATGGGTACTGGTACTTGGCACATATATTGG-CCCATATCCCTCATCAAATCTCGAAAACTCAC
261 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19481685 ACCCCCTAAAAGAGAACTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
326 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
* * *
19481750 GGGGACACTTTTTTAAAATGGTCACAAAATCTTGTAAACTTTAAGTTTTTAGCTGAATGTTTTTG
391 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTG
* * * *
19481815 TGCATGCCAACAAAAATACAAGGGTCACGTCTACCAAGTTTGGGGTCAAAACTCCATCCGAAAAA
456 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
19481880 ATATTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAATCATCTT
521 ATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
19481945 GCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCA
586 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCA
* *
19482010 TTGGCACCCAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGGCTTGCG
651 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
19482075 CATCCTGTCTCTCTGGTCGGCGTAGTGCTCGCCTGCTCACCCACCCGC-AG-TAGGATTGG-TAG
716 CATCCCGTCTCTATGGCCGGCGTAGTGCTCGCC-GCTCACCCGCCCGCTCGTTAGG-TTGGTTAG
* * * * *
19482137 TACATA--GAGGGGGA-CCC-GGCCGATCCCCGACTTGC-GCA-TCCCGC-CCCT-CTG-GCGG
779 TACATACGGA-GTGCATCCCAGGCCGATCCCCGACTTACAGCAGTCCCGCACCATGCAGAGCGG
*
19482192 G-CTAAGCGCCCGCA-CACTCGTTTCGTGGGTTGACTTAG-GCATACGAAGTTCATTCCTAGTCT
1 GACTAAGCGCCCGCACCACTCGTTTCGTGGGTTGACTTAGCGCACACGAAGTTCATTCCTAGTCT
* *
19482254 GA-GCAAACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCATATGCT
66 TAGGCAAACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * *
19482318 AGGCTCAGGCATGTGCTGGTGCCACATGTTTCTTC-ACTAGGGCACCAACGCCGGAGCATCGTCG
131 AGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTC-AGGGCACCATCGCCGGAGCATCGTCG
* *
19482382 GAGAACCTGACCGGCAGCATTGGGGTTCC-AGCGATCTGGGGGTCGGGGGGTGTGCGCACATGAT
195 GAGAACCTGACCGGC-GCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGTGTGCGCACATGAT
* *
19482446 TTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
258 GTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
19482511 CACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
323 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGA
* *
19482576 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA-CTTTTAGCTGAATTTTT
388 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTT
* * * * * * *
19482640 TTGTCCATGCCAACAAAAATACAAGGATCACGTCAATCGAGTTTTGGGACCAAAACTCCTTCCTA
453 TTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAG-TTTGGGGCCAAAACTCCTTCCGA
** * * *
19482705 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAAAAAATGAGTCG
517 AAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
19482770 TCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCAGAAAAAT
582 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAAT
** *
19482835 GGCATTGGCACATACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
647 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * ** *
19482900 TGCGCATCCCGCCTCTATGGCCGACGTAGCGCTCG-C-C-CACCCGCTCGCTCGTTTTGTCGGTT
712 TGCGCATCCCGTCTCTATGGCCGGCGTAGTGCTCGCCGCTCACCCGCCCGCTCGTTAGGTTGGTT
* * * *
19482962 AGCTTAGGCATACGGAGTTCATTCCCAGTCTAATATCAGA-CCAGACCGAGAGTTACGGTAGTAG
777 AG--TA--CATACGGAGTGCA-TCCCAGGC------C-GATCC---CC--GACTTAC---AGCA-
* *
19483026 GAT-CAGCAGCATGCAGAGGGGGACCCGGCCG
821 G-TCCCGCACCATGCAGA----G---C-G--G
19483057 ATCCGCAGCTTAAGCAACCCGCCCCTCTGGCTAGCTGAGCGCCCACACGTTCGTTTCGTGGGTTG
1 ----G-A-C-TAAG-----CG---C-C---C--GC--A-----C-CAC--TCGTTTCGTGGGTTG
* * * * *
19483122 ACTTAG-GCATACGGAGTTCATTCCTAGTC-TAAGCATACGAAGTTCATTCCTAGTCTAAGATCG
35 ACTTAGCGCACACGAAGTTCATTCCTAGTCTTAGGCAAACGAAGTTCATTCCCAGTCTAAGATCG
* * * ***
19483185 GATCGGAACGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGTTGCATTTTTCTT
100 GACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCACATTTTTCTT
* * * * * * *
19483250 CGTCAGGGCACCATCACCGAAGCATCGCCGGAGAACCTGACTGGTGGCATTAGAGTTCCGACGAT
165 CGTCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGG-CGCATTGGGGTTCCGACGAT
* *
19483315 CGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATTTTGGC
229 CGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGC
*
19483380 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
294 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
19483445 TTGCTGCCAATAGCAATTAAAGTGTCTGAAATGGGGACACTTTATTTGAAATGGTCACACAATCT
359 TTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTT-TTTCAAATGGTCACAAAATCT
* * * * * *
19483510 TATACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATCCCAAAAAAAATACAAGGATCACATCC
423 TGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCT
* * * * * *
19483575 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTTAAAAATCCCAAACGACAAAAAGTTTT
488 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTC
* *
19483640 AAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGAC
553 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
19483705 CATTGTATGAATTTACAAGCC-GTAAAAATGG-ATTGGCATGCAGAAATATGAAGATGTGCCTAA
618 CATTGTATGAATTTACAAGCCAG-AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
* * ** * *
19483768 ACACACCTACCACCCTATCGATCCATGGCTTGCATATCCCGTCTCTTTGGCCGGCGTAGTGCCCG
682 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGGCGTAGTGCTCG
* * * * *
19483833 CCCGTTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG-GCATACGGAGTTCATTCCTAGTCTAA
747 -CCGCTCACCCGCCCGCTCG--T--TAGGTTGG-TTAGTACATACGGAGTGCA-TCC----C--A
* * * ** * * *** * *
19483897 GATCAGATCAGACCAAGGGTTGTGGCAGAAGGATCGACAGCATGCAGAGGGG
799 G-GCCGATC---CC--CGACT-T-ACAGCAGTCCCG-CACCATGCAGAGCGG
*
19483949 GACCCGATCGATCCCCGGCTTGCGCATCCCACCCTTCTGGCCGGTTGAGTGCCCGCACGCTCGTT
1 GA--C--T--A---------AGCG--------CC--C--G-C-----A-----C-CA--CTCGTT
* * * * * * * * * * * *
19484014 TCATGGGTTGGCTTAG-GCATATGGAGTTAATTCCCAATC-TAAGCATACGGAGTTCATTCCTAG
25 TCGTGGGTTGACTTAGCGCACACGAAGTTCATTCCTAGTCTTAGGCAAACGAAGTTCATTCCCAG
* ** * * * *
19484077 TCTAAGATCGTATTGGACCAAGGGTTACGGTAGCACATGCTAGGCTCAAGCATGTGCTGGTGCCA
90 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCA
* * ** * *
19484142 TATTTTTCTTCATTGGGGCACCATCGTCGGAGCATCG-CAGGAGAACCTTACCGGCGACATTGGG
155 CATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGACCGGCG-CATTGGG
* *
19484206 GTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGG
218 GTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGG
* *
19484271 CCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTG
281 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * * *
19484336 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATTGTGGAAAATTTTTTCAAATG
346 AGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
19484401 GTCACAAAATCTTGTACAC-TTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACA
411 GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACA
* * *
19484465 AGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAGAAATCCCGAACC
476 AGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACC
* * *
19484530 ACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGATTCGTCTTGCCATGAAACTTCATGTAAA
541 ACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
19484595 GGCTTAAGGGACCATTGTATGAATTTACAA-CCATAAAAATGGCATTGGCATGCAGAAATATGAA
606 GGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCACGCAGAAATATGAA
* * * **
19484659 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCCTATCTCTGGCCTA
671 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGG
* *
19484724 CGTAGTGCCCG-C-CT-ATCCGCCCGCTCGTT
736 CGTAGTGCTCGCCGCTCACCCGCCCGCTCGTT
19484753 TCGTCGGTTG
Statistics
Matches: 2133, Mismatches: 270, Indels: 238
0.81 0.10 0.09
Matches are distributed among these distances:
814 1 0.00
815 154 0.07
816 6 0.00
821 3 0.00
822 2 0.00
823 1 0.00
824 1 0.00
825 9 0.00
826 27 0.01
827 12 0.01
828 93 0.04
829 357 0.17
831 4 0.00
832 2 0.00
833 2 0.00
834 3 0.00
835 2 0.00
841 3 0.00
842 2 0.00
844 2 0.00
846 5 0.00
850 2 0.00
852 3 0.00
853 3 0.00
854 2 0.00
859 1 0.00
862 1 0.00
863 1 0.00
865 1 0.00
869 1 0.00
872 1 0.00
873 4 0.00
878 2 0.00
881 1 0.00
882 1 0.00
885 1 0.00
887 3 0.00
888 2 0.00
889 2 0.00
891 1 0.00
892 1 0.00
894 2 0.00
895 2 0.00
896 4 0.00
897 1 0.00
898 444 0.21
899 171 0.08
900 55 0.03
901 14 0.01
902 508 0.24
903 37 0.02
904 154 0.07
905 1 0.00
906 7 0.00
907 4 0.00
908 2 0.00
909 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (841 bp):
GACTAAGCGCCCGCACCACTCGTTTCGTGGGTTGACTTAGCGCACACGAAGTTCATTCCTAGTCT
TAGGCAAACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
AGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGTCGG
AGAACCTGACCGGCGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTG
TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCA
TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTATGGCCGGCGTAGTGCTCGCCGCTCACCCGCCCGCTCGTTAGGTTGGTTAGTA
CATACGGAGTGCATCCCAGGCCGATCCCCGACTTACAGCAGTCCCGCACCATGCAGAGCGG
Found at i:19483165 original size:26 final size:26
Alignment explanation
Indices: 19483128--19483180 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19483118 GTTGACTTAG
*
19483128 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
19483154 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
19483180 G
1 G
19483181 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:19484066 original size:26 final size:26
Alignment explanation
Indices: 19484030--19484082 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19484020 GTTGGCTTAG
*
19484030 GCATATGGAGTTAATTCCCAATCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
* * *
19484056 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
19484082 G
1 G
19484083 ATCGTATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAATCTAA
Found at i:19484429 original size:902 final size:896
Alignment explanation
Indices: 19482142--19484898 Score: 3852
Period size: 898 Copynumber: 3.1 Consensus size: 896
19482132 GGTAGTACAT
* * * *
19482142 AGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCGGGCTAAGCGCCCGCAC
1 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * *
19482207 ACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTGAGCAAACGAAGTTCATT
66 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATT
* * *
19482272 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCATATGCTAGGCTCAGGCATGTGCTGG
131 CCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCATGTGCTGG
* * *
19482337 TGCCACATGTTTCTTCACTAGGGCACCAACGCCGGAGCATCGTCGGAGAACCTGACCGGC-AGCA
196 TGCCACATTTTTCTTCATTAGGGCACCATCGCCGGAGCATCG-CGGAGAACCTGACCGGCGA-CA
* * *
19482401 TTGGGGTTCC-AGCGATCTGGGGGTCGGGGGGTGTGCGCACATGATTTGTGATGGGTGCTAGTAC
259 TTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTAC
19482465 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCA
323 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAGAGCA
*
19482530 TTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
387 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
19482595 AATGGTCACAAAATCTTGTACACTTTGA-CTTTTAGCTGAATTTTTTTGTCCATGCCAACAAAAA
452 AATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * * *
19482659 TACAAGGATCACGTCAATCGAGTTTTGGGACCAAAACTCCTTCCTAAAAAATTTTAAAAAATCTC
517 TACAAGGATCACATCAACCAAG-TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTTAAAAATC-C
* * * * * * * *
19482724 GAACCG-TAAAAAGTTTCCAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCTTGAAACTTCA
580 CAAACGACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCA
* * *** *
19482788 CGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCAG-AAAAATGGCATTGGCACATACAA
645 TGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC-GTAAAAATGGCATTGGCATGCAGAA
*
19482852 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTA
709 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTA
* * * * *
19482917 TGGCCGACGTAGCGCTCGCC--CACCCGCTCGCTCGTTTTGTCGGTTAGCTTAGGCATACGGAGT
774 TGGCCGACGTAGTGCCCGCCTTC-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * ** *
19482980 TCATTCCCAGTCTAATATCAGACCAGACCGAGAGTTACGGTAGTAGGATCAGCAGCATGC
838 TCATTCCCAGTCTAAGATCAGA-CAGACCGAGGGTTGTGGCAGTAGGATCAGCAGCATGC
* * * ** * ** *
19483040 AGAGGGGGACCCGGCCGATCCGCAGCTTAAGCAACCCGCCCCTCTGGCTAGCTGAGCGCCCACAC
1 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
19483105 GTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATT
66 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATT
* *
19483170 CCTAGTCTAAGATCGGATCGGAACGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGG
131 CCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCATGTGCTGG
*** * * * * * * *
19483235 TGTTGCATTTTTCTTCGTCAGGGCACCATCACCGAAGCATCGCCGGAGAACCTGACTGGTGGCAT
196 TGCCACATTTTTCTTCATTAGGGCACCATCGCCGGAGCATCG-CGGAGAACCTGACCGGCGACAT
* *
19483300 TAGAGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTT
260 TGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTT
* *
19483365 GGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
325 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATT
* * *
19483430 TGAGATTTTACAGGTTTGCTGCCAATAGCAATTAAAGTGTCTGAAATGGGGACACTTTATTTGAA
389 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT-TTTCAA
* * * * *
19483495 ATGGTCACACAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATCCCAAAAAAAAT
453 ATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* *
19483560 ACAAGGATCACATCCACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTTAAAAATCCCAA
518 ACAAGGATCACATCAACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTTAAAAATCCCAA
*
19483625 ACGACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCATGT
583 ACGACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCATGT
19483690 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGG-ATTGGCATGCAGAAATAT
648 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCATGCAGAAATAT
* * ** *
19483754 GAAGATGTGCCTAAACACACCTACCACCCTATCGATCCATGGCTTGCATATCCCGTCTCTTTGGC
713 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGC
*
19483819 CGGCGTAGTGCCCGCCCGTTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
778 CGACGTAGTGCCCG-CC-TTC-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * *
19483884 ATTCCTAGTCTAAGATCAGATCAGACCAAGGGTTGTGGCAGAAGGATC-GACAGCATGC
840 ATTCCCAGTCTAAGATCAGA-CAGACCGAGGGTTGTGGCAGTAGGATCAG-CAGCATGC
* * * * *
19483942 AGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCTTCTGGCCGGTTGAGTGCCCGCAC
1 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * * * * *
19484007 GCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTAATTCCCAATCTAAGCATACGGAGTTCATT
66 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATT
* * * * * *
19484072 CCTAGTCTAAGATCGTATTGGACCAAGGGTTACGGTAGCACATGCTAGGCTCAAGCATGTGCTGG
131 CCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCATGTGCTGG
* * * *
19484137 TGCCATATTTTTCTTCATTGGGGCACCATCGTCGGAGCATCGCAGGAGAACCTTACCGGCGACAT
196 TGCCACATTTTTCTTCATTAGGGCACCATCGCCGGAGCATCGC-GGAGAACCTGACCGGCGACAT
* * *
19484202 TGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTAC
260 TGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTAC
*
19484267 TTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCA
323 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC-CTTAAAGAGCA
* * * *
19484332 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATTGTGGAAAATTTTTTCA
387 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
19484397 AATGGTCACAAAATCTTGTACAC-TTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAA
452 AATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* *
19484461 TACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA-TTTTAAGAAATCCC
517 TACAAGGATCACATCAACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTTAA-AAATCCC
* *
19484525 GAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA-TTCGTCTTGCCATGAAACTTCA
581 AAACGACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTT-GTCTTGCCATGAAACTTCA
* *
19484589 TGTAAAGGCTTAAGGGACCATTGTATGAATTTACAA-CCATAAAAATGGCATTGGCATGCAGAAA
645 TGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCATGCAGAAA
* * *
19484653 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCCTATCTCT
710 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTAT
* *
19484718 GGCCTACGTAGTGCCCGCCTAT--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTT
775 GGCCGACGTAGTGCCCGCCT-TCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * *
19484781 CATTCCCAGTCTAAGATCGGACTAGACTGAGGGTTGTGGCAGTAGGATCAGTAGCACGT
839 CATTCCCAGTCTAAGATCAGAC-AGACCGAGGGTTGTGGCAGTAGGATCAGCAGCATGC
* * * *
19484840 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCTTCCTGCCTCTCTGGTCGGCTGAGCGC
1 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
19484899 TCGTANNNNN
Statistics
Matches: 1640, Mismatches: 197, Indels: 44
0.87 0.10 0.02
Matches are distributed among these distances:
897 1 0.00
898 623 0.38
899 170 0.10
900 50 0.03
901 24 0.01
902 588 0.36
903 36 0.02
904 148 0.09
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATT
CCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCATGTGCTGG
TGCCACATTTTTCTTCATTAGGGCACCATCGCCGGAGCATCGCGGAGAACCTGACCGGCGACATT
GGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
AGGATCACATCAACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTTAAAAATCCCAAACG
ACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCATGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCATGCAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGA
CGTAGTGCCCGCCTTCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCAGACAGACCGAGGGTTGTGGCAGTAGGATCAGCAGCATGC
Found at i:19486143 original size:26 final size:26
Alignment explanation
Indices: 19486113--19486165 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19486103 GTTGACTTAG
19486113 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19486139 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19486165 G
1 G
19486166 ATCGTACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19487042 original size:26 final size:26
Alignment explanation
Indices: 19487006--19487058 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19486996 GTTGACTTAG
19487006 GCATACAGAGTACATTCCCAGTCTAA
1 GCATACAGAGTACATTCCCAGTCTAA
* *
19487032 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTACATTCCCAGTCTAA
19487058 G
1 G
19487059 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTACATTCCCAGTCTAA
Found at i:19488641 original size:898 final size:889
Alignment explanation
Indices: 19486087--19488671 Score: 3555
Period size: 893 Copynumber: 2.9 Consensus size: 889
19486077 CCCCAGGATA
*
19486087 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
1 CACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* ** * * *
19486152 ATTCCCAGTCTAAGATCGTACCGGACCGAGGGTTGCGATAGAAAATGCTGGGCTCGGGCATGTGC
66 ATTCCCAGTCTAAGATCGAACCAAACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGC
* * * * *
19486217 TGGTGCCACATTTTTTTTCGTTGAGGCACTATTGCCAGAGCATCATCGGAGAACCTGACTGACGG
131 TGGTGCCACA-TTTTTTTCGTTGGGGCACTATCGCCAGAGCATCACCGGAGAACCTGACCGATGG
* ** * * *
19486282 CATTAGGGTTCTAGCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTA
195 CATTGGGGTTCCGGCGATCGGGGGGGCAGGGGGTGTCCGCACATGATGTGCGATGGGTGCTGGTA
* * *
19486347 CTTGGCCCTTATATTGGCCCTTATTTCC-CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
260 CTTGGCCCTTATATTGGCCCCTA-TCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGC
* *
19486411 AGTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACACTTTTTTC
323 ACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
19486476 AAATGGCCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAA
388 AAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
** * *
19486541 ATACAAGGATCACT-TCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTGAAAAAATCC
453 ATACAAGGATCA-TGTCTACCAAGTTTGGGTTCAAAACTCCTTCCAAAAAAATTT-AAAAAATCC
* ** * * *
19486605 CGAACCGTAAAAAGTTTTGAAAATCATGAAAAATACAAAACGAGTCGTCTTGCCAAGAAACTTCA
516 CGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
19486670 CGTGAAGGTTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
581 CGTGAAGG-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
*
19486735 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCT
645 TATGAAGATGTGCCT-AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * *
19486800 GGCCTACATAGT--GCCCACCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
709 GG-CGACGTAGTGCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
** *
19486863 CCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCAGTATCGGCAGCACATGGAGTGGGAC
773 CCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACATGGAGTGGGAC
* * * **
19486928 CCAGTCAAATCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
838 CCAGACAAATCCCGACTTGCGCATCCCACCCCTCTGGCCGACTGAAAGCCCG
* *
19486980 CACGCTT-GTTTCATGGGTTGACTTAGGCATACAGAGTACATTCCCAGTCTAAGCATACGGAGTT
1 CACG-TTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * ** *
19487044 CATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGTGGCGGCACATGTTGGGCTCGGGCATGTG
65 CATTCCCAGTCTAAGATCGAACCAAACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTG
* * ** * * *
19487109 CTGGTGCCGCATTTTTTTCGTCGGCACACCATCGCCAGAGCATCGCCGGAGAACCTGACCGGTGG
130 CTGGTGCCACATTTTTTTCGTTGGGGCACTATCGCCAGAGCATCACCGGAGAACCTGACCGATGG
*
19487174 CATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTCCGCACATGATGTGCGATGGGTGCTAGT
195 CATTGGGGTTCCGGCGATCGGGGGGG-CAGGGGGTGTCCGCACATGATGTGCGATGGGTGCTGGT
* * *
19487239 ACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTGATAGCCTCTTAAAGAGC
259 ACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGC
* * * *
19487304 ATTTGAGATTTTACACGTTTGCTGTCGGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
323 ACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
19487369 AAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCTAAAAAAA
388 AAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* * *
19487434 ATACAAGGATCATGTCTACCAATTTTGGATTGAAAACTCCTTCCAAAAAAAGTTTAAAAAATCCC
453 ATACAAGGATCATGTCTACCAAGTTTGGGTTCAAAACTCCTTCCAAAAAAA-TTTAAAAAATCCC
* * *
19487499 GAACAGCAAAAAGTTTCAAAAAT-TAGAAAAA-ATGAAAAGGGAGTCGTTCCTTTTGCCATGAAA
517 GAACCGCAAAAAGTTTCAAAAATCTTGAAAAATA-GAAAA-CGAGTCG-T-C--TTGCCATGAAA
* * **
19487562 CTTCACGTGGAGGTTAAGGGACCATTGTATGAATTTACAAGCCA-AAAAATGGGATTGGCACACA
576 CTTCACGTGAAGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
*
19487626 GAAATATG-AGATG-GCCTAACCCACCTACCACTCCTATCGATCC-CGGCTTGCGGCATCCCATC
641 GAAATATGAAGATGTGCCTAACCCACCTACCAC-CCTATCGATCCACGGCTTGC-GCATCCCGTC
* * * ** *
19487688 CCTTTGGTCGATGTAGTGATCGCCTGCCCGCCCGCTCGTTTCCTCGGTTGGCTTAGGCATACGGA
704 TCTCTGG-CGACGTAGTG--CGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * ** *
19487753 GTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGGTAG--CATGCA
766 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACATG--
* **
19487816 GAG-GTGGACTC-GACCGATCCTCGACTTGCGCATCCCACCCCTCTGGCCGACTGAAAGCCCG
829 GAGTG-GGACCCAGACAAATCC-CGACTTGCGCATCCCACCCCTCTGGCCGACTGAAAGCCCG
* **
19487877 CACGTTCGTTTCATGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATGTGGAGTTC
1 CACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * *
19487942 ATTCCTAGTCTAAGATCGAATCATACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGT
66 ATTCCCAGTCTAAGATCGAACCAAACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGC
* * * *
19488007 TGGTGCCACATTTTTCATT-GTTGGGGCACTATCGTCGGTGCATCACCGGAGAACCTGACCAATG
131 TGGTGCCACATTTTT--TTCGTTGGGGCACTATCGCCAGAGCATCACCGGAGAACCTGACCGATG
* ** *
19488071 GCATTGGGGTTCCGGTGATCGGGGGGGTTGGGGGTGTCCGCACAAGATGTGCGATGGGTGCTGGT
194 GCATTGGGGTTCCGGCGATCGGGGGGGCAGGGGGTGTCCGCACATGATGTGCGATGGGTGCTGGT
* *
19488136 ACTTGGCCCTTATATTGCCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCACCTTAATGAG
259 ACTTGGCCCTTATATTG-GCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTAAAGAG
* * *
19488201 AACTTGAGATTTTACAGGTTTACTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTT
322 CACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
19488266 CAAATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAA
387 CAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* *
19488331 AATACAAGGATCATGTCTACCAAGTTTGGGTTCAAAAATCCTTCCAAAAAAATTTAAAAAAATCT
452 AATACAAGGATCATGTCTACCAAGTTTGGGTTCAAAACTCCTTCCAAAAAAATTT-AAAAAATCC
*
19488396 CGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCA
516 CGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
19488461 CGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
581 CGTGAAGG-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* *
19488526 TATGAAGATGTGCCTCAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCTGTCTCTCT
645 TATGAAGATGTGCCT-AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* *
19488591 GGCAGGCGTAGTGCCCGCCCACCCGGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
709 GGC-GACGTAGTG--CGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
19488656 TTCCCAGTCTAAGATC
771 TTCCCAGTCTAAGATC
19488672 GGATCGGATC
Statistics
Matches: 1483, Mismatches: 173, Indels: 67
0.86 0.10 0.04
Matches are distributed among these distances:
891 1 0.00
892 100 0.07
893 445 0.30
894 33 0.02
895 60 0.04
896 65 0.04
897 344 0.23
898 399 0.27
899 35 0.02
900 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
CACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCGAACCAAACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGC
TGGTGCCACATTTTTTTCGTTGGGGCACTATCGCCAGAGCATCACCGGAGAACCTGACCGATGGC
ATTGGGGTTCCGGCGATCGGGGGGGCAGGGGGTGTCCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCACT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
CAAGGATCATGTCTACCAAGTTTGGGTTCAAAACTCCTTCCAAAAAAATTTAAAAAATCCCGAAC
CGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
GATGTGCCTAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCGACG
TAGTGCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACATGGAGTGGGACCCAGACAA
ATCCCGACTTGCGCATCCCACCCCTCTGGCCGACTGAAAGCCCG
Found at i:19489447 original size:26 final size:26
Alignment explanation
Indices: 19489418--19489470 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19489408 GTTGAGTTAG
19489418 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19489444 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19489470 G
1 G
19489471 ATCGGACCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19489714 original size:639 final size:630
Alignment explanation
Indices: 19488953--19490219 Score: 1560
Period size: 636 Copynumber: 2.0 Consensus size: 630
19488943 TTCATCCCAA
*
19488953 CAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
1 CAAAAATACAAGGATCACCTCTACCAATTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
** *
19489018 ATACCGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
66 ATACCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
* **
19489083 TTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
131 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCACACA
* * *
19489148 AAAATATGAAGATG-ACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCT
196 AAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGGCT
* * *
19489212 CTCTGGTCGGAGTAGT-GCCTGCCTACTCG-TTTCGTCGGTTGGCTTAGGCATACAGAGTTCATT
261 CTCTGGCCAGAGTAGTCGCCCGCCTACTCGTTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATT
* * * *
19489275 CCTAGTCTAAGATCAGATCGGA-CTGAGGGTTACGACAGCAAGATCGGCAGCACGCAGAGGGGGA
326 CCCAGTCTAAGATCAGACCGGATC-AAGGGTT----------G-T-GGCAGCACGCAAAGGGGGA
*** * * * * * * *
19489339 CCCTTTCGATCCCCAG-CTTGCGTATCCTATCCCT-CTGGCCGGCTGAGCGTCTGCATGCTCGTT
378 CCCGACCGAT-CCCAGACTTACGCATCCCACCCCTAC-GGCCGACTGAGCGCCTGCACGCTCGTT
* *
19489402 TCGTGGGTTGAGTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
441 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGACTAAGCATACGGAGTTCATTCCCAGTC
* * * * * * *
19489467 TAAGATCGGACCTGATCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCAGGTGTTGCTTCCACA
506 TAAGATCAGACCGGACCGAGGGTTGCGACAACACATGCTGGGCTCGGGCAGGTGCTGCTGCCACA
** ** *
19489532 TTTTTCTTCGTTGGGGCACCATCGTCGAAGCTTCGTCAGAGAACCTGACCGGTTTTGGGC
571 TTTTTCTTCGTCCGGGCACCATCACCGAAGCATCGTCAGAGAACCTGACCGGTTTTGGGC
* * *** *
19489592 CAAAACTACAAGGATCACCTCTACCAGGTTTT-GGGCCAAAACTCCTTTTGAACAAATTTTAAAA
1 CAAAAATACAAGGATCACCTCTACCA-ATTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
**
19489656 AAT-CTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
65 AATAC-CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
**
19489720 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCATG
129 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCACA
* * *
19489785 CAGAAATATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGG
194 CAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGG
* * * *
19489850 CTTTCTGGCCAGCGTAGTGCCCGCCCGCCTGCTCGTTCATTTCGTCGGTTGGCTTAGGCATACGG
259 CTCTCTGGCCAGAGTAGT---CGCCCGCCTACTCG-T--TTTCGTCGGTTGGCTTAGGCATACAG
* ** * * *
19489915 AGTTCTTTCCCAGTCTAAGATTGGACCGGATCAAGGGTTGTGGTAGTACGCAAAGGTGGACCCGA
318 AGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGTGGCAGCACGCAAAGGGGGACCCGA
* * * *
19489980 CCGATCTCTGACTTACGCATCCCGCCCCTACGGCCGACTGAGCGCCTGTACGCTCGTTTCGTGGG
383 CCGATCCCAGACTTACGCATCCCACCCCTACGGCCGACTGAGCGCCTGCACGCTCGTTTCGTGGG
* * *
19490045 TTGACTTAGGCATACGGAGTTCATTCCCAGACTAAGCTTATGGAGTTCATTCCCAGTCTAAGCTC
448 TTGACTTAGGCATACGGAGTTCATTCCCAGACTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * **
19490110 AGACCGGACCGAGGGTTGCGGCAACATATGCTTGGCTTGGGCATGTGCTGGTGCCGTATTTTTCT
513 AGACCGGACCGAGGGTTGCGACAACACATGCTGGGCTCGGGCAGGTGCTGCTGCCACATTTTTCT
19490175 TCGTCCGGGCACCATCACCGAAGCATCGTCAGAGAACCTGACCGG
578 TCGTCCGGGCACCATCACCGAAGCATCGTCAGAGAACCTGACCGG
19490220 CGGCATTGGG
Statistics
Matches: 535, Mismatches: 79, Indels: 31
0.83 0.12 0.05
Matches are distributed among these distances:
635 3 0.01
636 215 0.40
637 2 0.00
638 2 0.00
639 184 0.34
640 61 0.11
644 11 0.02
648 56 0.10
649 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (630 bp):
CAAAAATACAAGGATCACCTCTACCAATTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
ATACCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCACACA
AAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGGCT
CTCTGGCCAGAGTAGTCGCCCGCCTACTCGTTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATT
CCCAGTCTAAGATCAGACCGGATCAAGGGTTGTGGCAGCACGCAAAGGGGGACCCGACCGATCCC
AGACTTACGCATCCCACCCCTACGGCCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTA
GGCATACGGAGTTCATTCCCAGACTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
CCGAGGGTTGCGACAACACATGCTGGGCTCGGGCAGGTGCTGCTGCCACATTTTTCTTCGTCCGG
GCACCATCACCGAAGCATCGTCAGAGAACCTGACCGGTTTTGGGC
Found at i:19490077 original size:27 final size:26
Alignment explanation
Indices: 19490054--19490107 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
19490044 GTTGACTTAG
19490054 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
* * *
19490080 GCTTATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
19490106 GC
1 GC
19490108 TCAGACCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:19491564 original size:896 final size:880
Alignment explanation
Indices: 19489592--19491973 Score: 2803
Period size: 885 Copynumber: 2.7 Consensus size: 880
19489582 GGTTTTGGGC
* * * * * *
19489592 CAAAACTACAAGGATCACCTCTACCAGGTTTTGGGCCAAAACTCCTTTTGAACAAATTTTAAAAA
1 CAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA-AAAATTTAAAAA
* *
19489657 ATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
65 ATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
** *
19489722 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCATGCA
130 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * *
19489787 GAAATATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGGCT
195 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
19489852 TTCTGGCCAGCGTAGTGCCCGCCCGCCTGCTCG-TTCATTTCGTCGGTTGGCTTAGGCATACGGA
260 CTCTGGCCGGCGTAGTGCCC-CCCGCC-GCCCGCTT-GTTTCGTCGGTTGGCTTAGGCATAC-GA
* * * * * * * *
19489916 GTTCTTTCCCAGTCTAAGATTGGACCGGATCAAGGGTT-GTGGTA-G-T-AC-G-C-AAAGGTGG
321 GTTCATTCCCAGTCTAAGATCGGACC-AAACAAGGGTTGGTAGCAGGATCACAGCCGAGAGGAGG
* * * * *
19489974 ACCCGACCGATCTCTGACTTACGCATCCCGCCCCTAC-GGCCGACTGAGCGCCTGTACGCTCGTT
385 ACCCGATCGATC-CCGACTTGCGCATCCCGCCCCT-CTGGCCGACTGAGCGCCCGCACGCTCGTT
* * *
19490038 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGACTAAGCTTA-TGGAGTTCATTCCCAGT
448 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACT-GAGTTCATTCCTAGT
* * * * * * * * * **
19490102 CTAAGCTCAGACCGGACCGAGGGTTGCGGCAACATATGCTTGGCTTGGGCATGTGCTGGTGCCGT
512 CTAAGATCAAACCAGACCGAGGGTTGCGCCAACACAAGCTGGGCTCGGGCACGTGCTGGTGCCAC
* *
19490167 ATTTTTCTTCGTCCGGGCACCATCACCGAAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGT
577 ATTTTTCTTCGTCCGGGCACCATCACCGAAGCATCG-CAGAGAACCTGACCGGCGACATTAGGGT
* *
19490232 TCCAGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
641 TCCA-CGATCGA----GCCGGGGGGTGTACGCACATGATGTACGATGGGTGCTGGTACTTGGCCC
19490297 TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCATTTGAGAT
701 TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCATTTGAGAT
*
19490362 TTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGCGACACTTTTTCAAATGCTCTC
766 TTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGCGACACTTTTTCAAATGCTCAC
* *
19490427 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAA
831 AAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTATGCATGCAAA
* * * *
19490477 CAAAAATACAAGGATCACAACTACCAAGTTTGGGGCCAAAACTCATTCCAAAAAAATTTTAAAAA
1 CAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA-TTTAAAAA
* * * *
19490542 ATCCCAAACCGCAAAAGGTTTCGAAAATCATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAAC
65 ATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
19490607 TTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGA
130 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* *
19490672 GAAATATGTAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCGCATCCCGTCT
195 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
*
19490737 CTCTGGCCGGCGTAGTGCTTGCCCACCCGCCCGCCCGCTTGTTTCGTCAGTTGGCTTAGGCATAC
260 CTCTGGCCGGCGTA--G--TGCCC-CCCG-CCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATAC
* *
19490802 AGAGTTCATTCACAGTCTAAGATCAGACCAAACCAAGGGTTGCAGTAGCAGGATCGACAGCTCGT
319 -GAGTTCATTCCCAGTCTAAGATCGGACCAAA-CAAGGGTTG--GTAGCAGGATC-ACAGC-CG-
* * * * * *
19490867 AGA-GAGGGACCCGATCGATGCCCGACTTGCGTATGCCACCCCTCTGGCCGGCTGATCGCCCACA
377 AGAGGA-GGACCCGATCGAT-CCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
* * * *
19490931 CGCTCGTTTCGCGGATTGACTTAGGCATACAGTGTTCATTCCCAGTCTAAGCATACTGAGTTCA-
440 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACTGAGTTCAT
*
19490995 TCCTAGGTCTAAGAT-AAACCAG-CCGAGGGTGGTGCTAGCCAGCACAAGCTCAGGGCTCCGGGC
505 TCCTA-GTCTAAGATCAAACCAGACCGAGGGT--TGC--GCCAACACAAGCT--GGGCT-CGGGC
** *** * *
19491058 ACGTGC-GG-GCCACATTTTT-TCTCGTGGGGGCACCATCTTTGGGAGCATCG-GGAGAACCTGA
562 ACGTGCTGGTGCCACATTTTTCT-TCGTCCGGGCACCATC-ACCGAAGCATCGCAGAGAACCTGA
* * *
19491119 CCGGCGACATTAGGGTT-C-TGA-CGA-TCGGGGGGTGTACGCACATGATGTACGATGGGTGCTT
625 CCGGCGACATTAGGGTTCCACGATCGAGCCGGGGGGTGTACGCACATGATGTACGATGGGTGCTG
** *
19491180 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCTCACCCCTTTAAAG
690 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC-TTAAAG
*
19491245 AGGCATTTGAGATTTTACAGGGTTTGCTGCCAGTAGCCA-TAAAGTGGTCTG-AATGG-GAACAC
754 A-GCATTTGAGATTTTACA-GGTTTGCTGCCAGTAGCCATTAAAAT-GTCTGAAATGGCG-ACAC
* * *
19491307 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGATGAATTTTTTTATGCATGCC
815 -TTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTATGCATGCA
19491372 AA
879 AA
* * **
19491374 CAGAAATACAAGGATCACGTCTACCATCTTTGGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAA
1 CAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAA
* * * * *
19491439 ACTCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACT
66 TCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * ** *
19491504 TCACGTGATGGCTTAAGGGACCATTGTGTGAATTTAAAAGCCATAAAAATCTCATTGGCACACAG
131 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * * * ** *
19491569 AAATATGAAGATGTGCCTAAGCCCAGCTACCACCTTATCGATTCATAGCTTGCGCATCTCGTCTC
196 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
*
19491634 TCTGGCCGGCGTAGTG----CCG--GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTC
261 TCTGGCCGGCGTAGTGCCCCCCGCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACG-AGTTC
*
19491693 ATTCCCAGTCTAAGATCGGACCAGAA-ATAGGGTTGTGGCAGCAGGATCAGCAGCACGCAGAGGA
325 ATTCCCAGTCTAAGATCGGACCA-AACA-AGGG-T-TGGTAGCAGGATCA-CAGC-CG-AGAGGA
* * *
19491757 GGACCCGATCGATCCTCGGCTTGTGCATCCCGCCCCTTCTGGCCGACTGAGCGCCCGCACGCTCA
383 GGACCCGATCGATCC-CGACTTGCGCATCCCGCCCC-TCTGGCCGACTGAGCGCCCGCACGCTCG
* * *
19491822 TTTCGTGGGTTGACTTAGGCATATGGAGTTCACTCCCAGTCTAAGCATACGGAGTTCATTCCTAG
446 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACTGAGTTCATTCCTAG
* * ** * * * * * *
19491887 TCTACGATCAGATGAAACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA
511 TCTAAGATCAAACCAGACCGAGGGTTGCGCCAACACAAGCTGGGCTCGGGCACGTGCTGGTGCCA
*
19491952 CATTTTTCTTCGTCAGGGCACC
576 CATTTTTCTTCGTCCGGGCACC
19491974 GTCGTCACAA
Statistics
Matches: 1277, Mismatches: 165, Indels: 113
0.82 0.11 0.07
Matches are distributed among these distances:
880 10 0.01
881 7 0.01
882 22 0.02
883 17 0.01
884 111 0.09
885 332 0.26
886 10 0.01
887 12 0.01
888 1 0.00
889 68 0.05
890 4 0.00
892 6 0.00
893 1 0.00
894 90 0.07
895 8 0.01
896 224 0.18
897 133 0.10
899 12 0.01
900 13 0.01
901 112 0.09
902 3 0.00
903 35 0.03
904 23 0.02
905 14 0.01
906 9 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (880 bp):
CAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAA
TCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGGCGTAGTGCCCCCCGCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGAGTTCA
TTCCCAGTCTAAGATCGGACCAAACAAGGGTTGGTAGCAGGATCACAGCCGAGAGGAGGACCCGA
TCGATCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACTGAGTTCATTCCTAGTCTAAGATCA
AACCAGACCGAGGGTTGCGCCAACACAAGCTGGGCTCGGGCACGTGCTGGTGCCACATTTTTCTT
CGTCCGGGCACCATCACCGAAGCATCGCAGAGAACCTGACCGGCGACATTAGGGTTCCACGATCG
AGCCGGGGGGTGTACGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
CCAGTAGCCATTAAAATGTCTGAAATGGCGACACTTTTTCAAATGCTCACAAAATCTTGTACACT
TCGAGTTTTTAGATGAATTTTTTTATGCATGCAAA
Found at i:19491876 original size:26 final size:26
Alignment explanation
Indices: 19491840--19491890 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19491830 GTTGACTTAG
*
19491840 GCATATGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
* *
19491866 GCATACGGAGTTCATTCCTAGTCTA
1 GCATACGGAGTTCACTCCCAGTCTA
19491891 CGATCAGATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:19494326 original size:26 final size:26
Alignment explanation
Indices: 19494293--19494348 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
19494283 TGGGTTGACT
*
19494293 TAAGCATATGCAATTCATTCCCAGAC
1 TAAGCATACGCAATTCATTCCCAGAC
* * *
19494319 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGCAATTCATTCCCAGAC
19494345 TAAG
1 TAAG
19494349 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACGCAATTCATTCCCAGAC
Found at i:19496135 original size:26 final size:26
Alignment explanation
Indices: 19496105--19496157 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19496095 GGTGACTTAG
19496105 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19496131 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19496157 G
1 G
19496158 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19496264 original size:890 final size:886
Alignment explanation
Indices: 19492514--19497794 Score: 6238
Period size: 919 Copynumber: 5.9 Consensus size: 886
19492504 GACTTAGGCG
* ** * * *
19492514 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTAAGGGTTGTGACAGTACATGCAGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGTGGCAGCACATGCTGGGCTC
* * * * * *
19492579 GAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGAACCTGACAGACGGC
65 GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCAGAGAACCTGACTGGCGAC
* * *
19492644 ATTGGGGTTCCGATGATCGAGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTACGGGTA
130 ATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGA--GG--CTGGTA
* *
19492709 CTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGC
190 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
19492774 ATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTC
255 ATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
19492839 AAATGGTCACAAAATCTTGTATACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
320 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
19492904 ATACAAGGATCATGTCTGCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC
385 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTC
** * * *
19492969 GAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCCTCTTGCCATTAAACTTCAC
450 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* ** *
19493034 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGTGTTGGCACGTAGAAAT
515 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* ** * *
19493099 ATAAAGATGTGAGTAAACCCACCTACCATCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTG
580 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * * * *
19493164 GTTGACGTAGTGCCCACCCACCCGCCCACCCGCTCGTTTTGTCGATTGGCTTAGGCATACGGAGT
645 GCTGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * ** * * * * *
19493229 TCATTCCCAGTGTAAGATCAGACCGGAATGAGGGTTGCAACAGTAAGATCGACAACACACAGAGG
710 TCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGGCAGCACACAGAGG
* * * * * * * *
19493294 GGGACCCGGTCGATCCCCGACTTACGCATCCCACCCCTCTGGTCGGTTGAGCGCCTGTACGCTCG
775 GGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCT
* *
19493359 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCA
840 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * ** *
19493406 TATGGAGTTCATTCCCAGTCTAAGATCAGATAGGATCGAGGGTTGCAGCAGCACATGCTGGGGTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACA-GACCGAGGGTTGTGGCAGCACATGCTGGGCTC
** * * **
19493471 GGGCATGTGCTGGTGGTGCATTTCTCTTTGCCAAGGCACCATCGTCGGAGCATCGTCGGAGAACC
65 GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGT-----CA------GAGAACC
*
19493536 TGATCGGATGCTTTGAGGTACCGACAGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGTGTGC
119 ---T--GA--C--T--GG---CG--A-CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGC
* * *
19493601 GGACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACC
167 GCACATGATGTGCGA---G-GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
19493666 TCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAA
228 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAA
* * ** *
19493731 AGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTACTATACTTCGAGTTTTTAGC
293 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
19493796 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACA
358 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * *
19493861 CCTTCCAAATAAATTTTAAAAAATCTCGAA-TGAGAAAAAGTTTCAAAAATCATGAAAAATACAA
423 CCTTCCAAAAAAATTTTAAAAAATCTCGAACCG-TAAAAAGTTTCAAAAATCATGAAAAATAGAA
* * * * *
19493925 AACGAGTCGTCTTGCAAGGAAACTTCACATGAAGGCTTAATGGACCATTGTATGAATTTACAAAC
487 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
19493990 CATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
552 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * * *
19494055 TCCACGACTTGCGCATCCCATGTCTCTGGCCGGCGTAGTACCCGCCCGCTCACCCACCCGCTCGT
617 TCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCGT
* * * *
19494120 TTCATCTGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACCAAGGGTT
682 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTGGACCGAGGGTT
* * * * * * *
19494184 GCTG-TAGCAAGATCGGCAGCACACAGAGAGGGACCCGACCGATCCTCGGCTTACGCATTCCACC
746 GC-GACAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCC
* * * * * * * * *
19494248 CCACTGGCCGACTGAGCACCCGCACTCTCGTTTCGTGGGTTGACTTAAGCATATGCAATTCATTC
810 CCTCTGGCCGGCTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
*
19494313 CCAGACTAAGCA
875 CCAGTCTAAGCA
*
19494325 TACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGTGGCAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGAC-AGACCGAGGGTTGTGGCAGCACATGCTGGGCTC
* * *
19494390 GGGCATGTGCTGGTGGCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACC
65 GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA---TC---G--TCA---GAGAACC
*
19494455 TGACCGGATGCATTGAGGTACCGACGGCATTGGGGTTCCAACGATCAGGGGGGCCGGGGGGTGTG
119 T-----GA--C--T--GG---CGA---CATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTG
* *
19494520 CACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAAC
166 CGCACATGATGTGCGA---G-GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
19494585 CTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGACATTA
227 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTA
* *
19494650 AAGTGTCTGAAATGGGGATATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
292 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
19494715 CTGAATGTTTTTGTCCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTCT--GGCCAAAA
357 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT-TGGGGCCAAAA
* * * * *
19494778 CTCCTCCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGA
421 CTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
*
19494843 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG-TGTAAGGGACAATTGTATGAATTTACAA
486 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT-TAAGGGACCATTGTATGAATTTACAA
*
19494907 GCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
550 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * ** **
19494972 GATCCATGGCTTACGCATCCCACCTCTCTGGCTGGCGTAGTGCCCGCCCGATCACCCGCCCGCTC
615 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTC
* * *
19495037 GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGT
680 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGT
* ** * ** ** * * *
19495102 TGAGGTAGCAGGATCGGAAGCACGTAGAGGGGGACCCGATCGATCCCCGGAATGCGCGTCTCGCC
745 TGCGACAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCC
* * ** * ** **
19495167 CTTTTGGATGGCTGAGCGCCCGCACTCTCTTTTTATGGGTTGACTTAGGCATACAAAGTTCATTC
810 CCTCTGGCCGGCTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
19495232 CCAGTCTAAGCA
875 CCAGTCTAAGCA
* * * * * * *
19495244 TGCGGAGTTCATTCCCAGTCTAAGATCGGACAGGATCGACGCTTGCGACAGTACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACA-GACCGAGGGTTGTGGCAGCACATGCTGGGCTC
* * * * *
19495309 GGGCATGTGCTGGTGCTGCAGTTTTCTTCGTCGGGGCACCATTC-TCGGAGAACCTGACCGGCGA
65 GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA-TCGTCAGAGAACCTGACTGGCGA
** * * * *
19495373 CATTAAGGTTCCGATGATCCGGGGGGCCGGAGGGGAGTGTGCACATCATGTGCGA-GCTGGTACT
129 CATTGGGGTTCCGACGAT-CGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGAGGCTGGTACT
* * *
19495437 TTGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
192 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * *
19495502 TTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAATGTGTCTAAAATGGGGACACTTTTTTCAA
257 TTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * * * **
19495567 ATGATCACAAAATCTTGTTCACTTCGAGTTTTTACCTAAATTTTTTTATGCATGCCAATACCTAA
322 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-A-ACAAAA
** * *
19495632 ATACAAGGATCACGTCTACCAAGTTCAGGGCCAAAACTGCTTCCAAAAAAATTTTAAAAATTCTC
385 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTC
*
19495697 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAATCGAGTCGTCTTGCCATGAAACTTCAC
450 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* **
19495762 GTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGTTATTGGCATC-CAGAAA
515 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CGCAGAAA
* * * * *
19495826 TATAAAGATGAGCCTAAACCCACCTAACACCCTATCGATCCACGGCTTGCTCATCCCGCCTCTCT
579 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
19495891 GGCTGGCGTAGTGCCCGCCAGCCCGCCCGCCCACTCGTTTCGTTGGTTGGCTTAGGCATACGGAG
644 GGCTGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * **
19495956 TTCATTCCTAGTCTAAGATCAGACAGGACCAAGGGTTGCGACAACAGGATCGGCAGCACATTGAG
709 TTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGGCAGCACACAGAG
* * * *
19496021 GGGGACCCGATCGATCCCCGGCTTGCTCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTC
774 GGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
*
19496086 TTTTCATGTGG-TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
839 TTTTCGTG-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
19496134 TACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGTGGCAGCACATGCTGGGCTC
* * *
19496199 GGGCATGTGCTGGTACCGTATTTTTCTTCACCGGGGCACCATCGTCAGAGAACCTGACTGGCGAC
65 GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCAGAGAACCTGACTGGCGAC
* *
19496264 ATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGAGCGCACATGATGTGCGATGGGTGCTGTTA
130 ATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGA---G-GCTGGTA
19496329 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
190 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
19496394 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTTTGAAATGGGGACACTTTTTTC
255 ATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
19496459 AAAATGGTCACAAAATCTTATACACTTTGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAA
320 -AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
19496524 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCCTTGTAAAATTTTAAAAAATC
384 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA---C-TCC-----------T------TC
* * *
19496589 TCGAACCGTAAAAAGTTTAAAAAATCTCAAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAA
428 -C-AA----AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* *
19496654 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGA
487 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * *
19496719 AATAAAAATGGCATTGGCACGCAAAAATATGATGATGTGCCTAAACCCACCTACCACTCTATCGA
552 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* ** **
19496784 TCTACGGCTTGCGCATCCCGTCTCTCTGG-TCGGCGTAGTGCCTACCCGCCCACCCGCTTGCTCG
617 TCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCG
* * **
19496848 TTTCGTCGGTTGGCTTAGTCATACGGAGTTCATTCCTAGTCTAAGATTGGACTGGACCGA-GGTT
681 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTT
* * * * * * *
19496912 GCGGCAGTAGGATCGGTAGAACGCAG-GGGGGACCC-AGTCGATCCTCGGCATACGCATCCCGCC
746 GCGACAGCAGGATCGGCAGCACACAGAGGGGGACCCGA-TCGATCCCCGGCTTACGCATCCCGCC
* *
19496975 CCTCTTGTCGGCTGAGCGCCCGCACGCT-TATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
810 CCTCTGGCCGGCTGAGCGCCCGCACGCTCT-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
***
19497039 TTTAGTCTAAGCA
874 CCCAGTCTAAGCA
* * * * * *
19497052 TATGGAGTTCATTCCCAATCTAAGATTGGACCAGACCGAGTGTTATGGCAGCACATGATGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGTGGCAGCACATGCTGGGCTC
* * * *
19497117 GGGCATGTGCTGGTGCCGCATTTTTCTTTG-CGGGGCACCATTGTCAGAGAACCTGACCGGCGGC
65 GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCAGAGAACCTGACTGGCGAC
* ** * *** * * *
19497181 ATTGGGGTTTCGGTGATAGGGGAGTTGGGGGGGTGTGCGCACTTGATGTGAGATGGGTGCTAGTA
130 ATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGA---G-GCTGGTA
* *
19497246 CTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAGCCTCGAGAACTCACACCCCCTTAAAGAGC
190 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
19497311 AATTGAGATTTTATC-GGTTTGCTGCCAATAGCCATTCAAGTGTCTGAAATGGGGACACTTTTTT
255 ATTTGAGATTTTA-CAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
19497375 CAAATGGTCA-TAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTCTTTTTGTGCATACCAAGAA
319 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAA
*
19497438 AAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAGT--TT-C---AAAATTTTAAAAAATC
383 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
* * * * *
19497496 TTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAGTAGAAAACGAGTCTTCTTGCCATGAAACATC
448 TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
19497561 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAA
513 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
*
19497626 ATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
578 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * *
19497691 TGGCCGTCGTAGT----GCCCG----CCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGA
643 TGGCTGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * *
19497748 GTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGATGCGGCAGCA
708 GTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCA
19497795 CATCCCTTTT
Statistics
Matches: 3801, Mismatches: 478, Indels: 238
0.84 0.11 0.05
Matches are distributed among these distances:
873 64 0.02
874 11 0.00
877 4 0.00
881 206 0.05
887 176 0.05
888 1 0.00
889 53 0.01
890 545 0.14
891 31 0.01
892 109 0.03
893 38 0.01
894 132 0.03
895 50 0.01
896 1 0.00
897 6 0.00
901 1 0.00
903 9 0.00
906 1 0.00
908 11 0.00
910 2 0.00
911 2 0.00
914 9 0.00
915 78 0.02
916 15 0.00
917 210 0.06
918 184 0.05
919 1302 0.34
920 542 0.14
921 2 0.00
922 4 0.00
925 1 0.00
927 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
TACGGAGTTCATTCCCAGTCTAAGATCGGACAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCG
GGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCAGAGAACCTGACTGGCGACA
TTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAGGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCG
TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGC
GTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGGCAGCACACAGAGGGGGACC
CGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCTTTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
Found at i:19496602 original size:26 final size:26
Alignment explanation
Indices: 19496573--19496640 Score: 118
Period size: 26 Copynumber: 2.6 Consensus size: 26
19496563 CCTTCCTTGT
* *
19496573 AAAATTTTAAAAAATCTCGAACCGTA
1 AAAAGTTTAAAAAATCTCAAACCGTA
19496599 AAAAGTTTAAAAAATCTCAAACCGTA
1 AAAAGTTTAAAAAATCTCAAACCGTA
19496625 AAAAGTTTAAAAAATC
1 AAAAGTTTAAAAAATC
19496641 ATGAAAAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.54, C:0.13, G:0.07, T:0.25
Consensus pattern (26 bp):
AAAAGTTTAAAAAATCTCAAACCGTA
Found at i:19498448 original size:26 final size:26
Alignment explanation
Indices: 19498412--19498464 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19498402 GTTGACTTAG
*
19498412 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
* *
19498438 GCATATGGAGTTCATTCCTAGGCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
19498464 G
1 G
19498465 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGGCTAA
Found at i:19499497 original size:721 final size:721
Alignment explanation
Indices: 19498438--19499936 Score: 2247
Period size: 721 Copynumber: 2.1 Consensus size: 721
19498428 CCCAGTCTAA
* * * *
19498438 GCATATGGAGTTCATTCCTAGGCTAAGAT-CGAACCAGACCGAGGGTTGTAGCAGCACATACTGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCCG-A-CAGACCGAGGGTTGCAGCAGCACATACTAG
* * * *
19498502 GCTCAGGCATGTGCTAGGGCTGTATTTTTCTTCTTCGGGGCACCATCGTCGGAGCATCACCGGAG
64 GCTCAGGCATGTGCTAGGGCTGCATTTTTCTTCCTCAGGGCACCATCGTCGGAGCATCACCGAAG
* *
19498567 AACCTTACCGGCGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTAGGTGCACATGATGTG
129 AACCTTACCGACGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTAGGCGCACATGATGTG
* ** *
19498632 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCGAGAACTCCC
194 CAATGGGTGCTGGTACTTGGCCAATATATTGGCCCCCTATCCCTCATAAAACCTCGAGAACTCAC
* * * *
19498697 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATCAAAGTGTCTGAAAT
* *
19498762 CGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 CGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGATGAATATTTTTG
* * * * * * *
19498827 TGCATGGCAAAAAAAATACAAGGATCACGTCTACTACATTTGGGGCGAAAACACCTTCCGAAAAA
389 TGAATGACAAAAAAAATACAAGGATCACATCTACCAAATTTGGCGCCAAAACACCTTCCGAAAAA
**
19498892 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
19498957 GCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCAAGTGAAGGCTTAAAGGACCATTGTATAAATTTACAAGCCATAAAAATGGCA
* *
19499022 TTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTATG
584 TTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
* * * *
19499087 CATCCCGTCTCTCTGGTCGGTGTAGTGCCCGCCCACCCGCCCACCCGCTCGCTCGTTTCGTCGGT
649 CATCCCGTCTCTCTGGTCGGCGTAGTGCCCACCCACCCGCCCACCCGCCCGCTCGTGTCGTCGGT
19499152 TGGCTTAG
714 TGGCTTAG
*
19499160 GCATACGGAGTTCATTCCTAGTCTAAGATCCGATCAGACCGAGGGTTGCAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCCGA-CAGACCGAGGGTTGCAGCAGCACATACTAGG
**
19499225 CTC-GAGCATGTGCT-GCGGCTGCATTTTTCTTCACT-AGGGCACCATCGTCGGAGCATCGTCGA
65 CTCAG-GCATGTGCTAG-GGCTGCATTTTTCTTC-CTCAGGGCACCATCGTCGGAGCATCACCGA
* * * *
19499287 AGAA-CTTGATCGACGGCATTGGGGTTCCGGCGATC-GGGGGGTCGGGGGGT-GTGCGCATATGA
127 AGAACCTT-ACCGACGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTAG-GCGCACATGA
*
19499349 TGTGCAATGGGTGCTGGTACTTGGCCAATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
190 TGTGCAATGGGTGCTGGTACTTGGCCAATATATTGGCCCCCTATCCCTCATAAAACCTCGAGAAC
19499414 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATCAAAGTGTCTG
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATCAAAGTGTCTG
* * * *
19499479 AAGTGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATATT
320 AAATCGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGATGAATATT
* * * *
19499544 TTTGTGAATGACAACAAAAATGCAAGGATCACATCTACCAAATTTGGCGCCAAAACTCCTTCTGA
385 TTTGTGAATGACAAAAAAAATACAAGGATCACATCTACCAAATTTGGCGCCAAAACACCTTCCGA
* *
19499609 AAAAATTTTAAAAAATCTCGAACCACAAAAGGTTTTGAAAATCATGAAAAATAGAAAACGAGTCG
450 AAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCG
* *
19499674 TCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTGTAAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCAAGTGAAGGCTTAAAGGACCATTGTATAAATTTACAAGCCATAAAAAT
* *
19499739 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGATCCACGGCT
580 GGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
19499804 TGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCTACCCACCCGCCCGCTCGCCCGCTCGTGTCGT
645 TACGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCACCCACCCGCCCACCCGCCCGCTCGTGTCGT
19499869 CGGTTGGCTTAG
710 CGGTTGGCTTAG
* * * * * *
19499881 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGATTGCGGCAGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCCGACAG-ACCGAGGGTTGCAGCAGCA
19499937 GAATCGGCAG
Statistics
Matches: 700, Mismatches: 70, Indels: 15
0.89 0.09 0.02
Matches are distributed among these distances:
720 3 0.00
721 560 0.80
722 134 0.19
723 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (721 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCCGACAGACCGAGGGTTGCAGCAGCACATACTAGGC
TCAGGCATGTGCTAGGGCTGCATTTTTCTTCCTCAGGGCACCATCGTCGGAGCATCACCGAAGAA
CCTTACCGACGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTAGGCGCACATGATGTGCA
ATGGGTGCTGGTACTTGGCCAATATATTGGCCCCCTATCCCTCATAAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATCAAAGTGTCTGAAATCG
GGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGATGAATATTTTTGTG
AATGACAAAAAAAATACAAGGATCACATCTACCAAATTTGGCGCCAAAACACCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCAAGTGAAGGCTTAAAGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCA
TCCCGTCTCTCTGGTCGGCGTAGTGCCCACCCACCCGCCCACCCGCCCGCTCGTGTCGTCGGTTG
GCTTAG
Found at i:19500076 original size:26 final size:26
Alignment explanation
Indices: 19500040--19500092 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19500030 TTTGACTTAG
* *
19500040 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
19500066 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
19500092 G
1 G
19500093 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTGCATTCCCAGTCTAA
Found at i:19501879 original size:26 final size:26
Alignment explanation
Indices: 19501842--19501892 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19501832 GTTGACTTAG
19501842 GCATACGGAGTTCATTCCCAGTCTAT
1 GCATACGGAGTTCATTCCCAGTCTAT
*
19501868 GCATACGTAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
19501893 AGATCAGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAT
Found at i:19502901 original size:901 final size:901
Alignment explanation
Indices: 19499160--19504193 Score: 6289
Period size: 901 Copynumber: 5.6 Consensus size: 901
19499150 GTTGGCTTAG
* * * * *
19499160 GCATACGGAGTTCATTCCTAGTCTAAGATCCG-ATCAGACCGAGGGTTGCAGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-CGAACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* ** * * *
19499224 GCTCGAGCATGTGCTGCG-GCTGCATTTTTCTTCACTAGGGCACCATCGTCGGAGCATCGTCGAA
65 GCTCGGGCATGTGCTG-GTGCTGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGA
* * * *
19499288 GAACTTGATCGACGGCATTGGGGTTCCGGCGATC-GGGGGGTC-GGGGGGTGTGCGCATATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* **
19499351 TGCAATGGGTGCTGGTACTTGGCCAATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
19499416 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATCAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
19499481 GTGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATATTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * * *
19499546 TGTGAATGACAACAAAAATGCAAGGATCACATCTACCAAATTTGGCGCCAAAACTCCTTCTGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAA
* * * *
19499611 AAATTTTAAAAAATCTCGAACCACAAAAGGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
454 AAATTTTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
19499676 TTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTGTAAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
19499741 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGATCCACGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
19499806 CGCATCCCGTCTCTCTGGTCGGCGTAGTGCCTACCCACCCGCCCGCTCGCCCGCTCGTGTCGTCG
649 CACATCCCGTCTCTCTGGCCGACGTAGTG----CCCGCCCGCCC-C-CGCCCGCTCGTTTCGTCG
* * * * *
19499871 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACC-GAACCGAGGATTGCGGCAG
708 GTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAG-ACTGAGGGTTGTGGCAG
* * * *
19499935 CAGAATCGGCAGCACGTAGAGGGGGACCC-AGCCAATCCCCGGCTTGCGCATCCCACCCCTCTGG
771 CAGGATCGGTAGCACGTAGAGGGGGACCCGAG-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * **
19499999 CC-ACATGAACGCCCGTACGCTCGTTTCGTGATTTGACTTAGGCATATGGAGTTCATTCCCAGTC
835 CCGAC-TGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTC
19500063 TAA
899 TAA
* * *
19500066 GCATACGGAGTGCATTCCCAGTCTAAGATC-AGACCAGACCGAAGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* ** * * * * * *
19500130 GCTCGGGCATGTGTTGGTGCCACATTTTTCTTCATCGAGGCACCATCACCGGAGAATCGTCGGGG
65 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * * *
19500195 AACCTGACCGGCGGCATTGGGGTTTCAGCGATCGGGGGTGCCGAAAGGGGGTGTGCGCACATGAT
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCG--GGGGGGTGTGCGCACATGAT
*
19500260 GTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
19500325 CACA-CCTCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
19500389 AATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTA-TTTTTAGTTGAATTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-AGTTTTTAGCTGAATTTT
*
19500453 TTTGTGCATGCCAACAAATAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCG
387 TTTGTGCATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCG
* *
19500518 AAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
451 AAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTC
* * * *
19500583 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTACGAATTTATAAGCCAAAAAAA
516 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
19500648 TGGCATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCTTATCGATCCACGGC
581 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * ** * *
19500713 TTGCACATCTCGTCTCTTTGGTCGGTGTAGT----GCCCG--CCCTCTCGCTCGTTTCGTCGGTT
646 TTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTT
* * * *
19500772 AGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAAG
711 GGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGG
* * * * *
19500837 ATCGGTCGCACGTAGAGGGGGACCCG-GCCAAACCCCGTG-TTGTGCATCCCGCCCCTCTGGCTG
775 ATCGGTAGCACGTAGAGGGGGACCCGAG-CGATCCCCG-GCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * * *
19500900 GCTAAGCACACGTACGCTCCTTTCGTGGGTTGACTTAGTCATACGAAGTTCATTCCCAGTCTAA
838 ACTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
* * * * * * *
19500964 GCATACAGAGTTCATTCTCAGTCTAAGATCGGACCGGACGGAGGGTTGCAGCAACACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19501029 CTCAGGCATGTGCTGGTG-TCGCATTTTTCTTCATCGAGGCACCATCGTCGGAGCATCGCTGGAG
66 CTCGGGCATGTGCTGGTGCT-GCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAG
** ** * * *
19501093 AACCTGACCGGTGGCATTAAGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGAAGT
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
19501158 GCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
19501223 TACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGGCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19501288 TGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTGTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
19501353 GTGCATGACAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAGAACTCCTTCTGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAA
* * * * * *
19501418 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCATAAATCGTGAAAAATAGAAAACGAGTCGTCC
455 AATTTTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
19501483 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGT
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
19501548 ATTGGCATGCAGAAATATGAAGATGCACCTAAACCCACCTACCACCCTATTGATCCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * **
19501613 GCATCCCGTCTTTCTAGCC-AGCGTAGTGCCCGCCTGCCCACCCGCCCGCTCGTTTTATCGGTTG
650 ACATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCG-CC-CCCGCCCGCTCGTTTCGTCGGTTG
* *
19501677 GCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TCGAGGGTTGAT-GCAGTAG
712 GCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACT-GAGGGTTG-TGGCAGCAG
* * * * * ** *
19501740 AATTGATAGCACGTAGAGGGGGACCCAACCGATCGTCGGCTTGCGCATCCCGCCCCTCTGGCAGA
774 GATCGGTAGCACGTAGAGGGGGACCCGAGCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
* * ** * * * *
19501805 CTAAGCGCCCACACGCTCGTTTTGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAT
839 CTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
* * * *
19501868 GCATACGTAGTTCATTCCCAGTCTAAGATC-AGA-CTGAGCTGAGGGTTGTGGCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGA-CCGAGGGTTGCGGCAGCACATGCTG
* * *
19501931 GGCT-AGGCATGTGCTGGTG-TCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGG
64 GGCTCGGGCATGTGCTGGTGCT-GCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGG
** * **
19501994 AGAACCTGACCGACTACAATGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGCACGCACATGAT
128 AGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
*
19502058 GTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
19502123 CACACCCCCTCAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
19502188 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
19502253 TTGTACATGCCAACAAAAATGCAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCTTTCCGAA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAA
* * *
19502318 AAAATTTTAAAAAATCTCGAACC-TAAAAAATTTTAAAAAATCATGAAAAATAGAAAACGAGT-T
453 AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTT-AAAAATCATGAAAAATAGAAAACGAGTCG
*
19502381 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAGAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * *
19502446 GGTATTGGCATGTAGAAATATGAAGATGTGCATAAACTCACATACCACCCTATCGATCCACGGTT
582 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
19502511 TGCACATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCAGCTCGCTCGTTTCGTCAGT
647 TGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-CC-GCCCGCTCGTTTCGTCGGT
* * *
19502576 TGGTTTAGGCATACGGAGTTCATTCACAGTCTAAGATCAGACCAGACTGAGGGTTGTAGCAGTAG
710 TGGCTTAGGCATACGGAGTTCATTC-CAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAG
** * * * * **
19502641 GATCGGTAGCACACAGAGGGGGACCCGAGCGATGCCCGGCTTGTGTATCCCACCCCTCTAACCGA
774 GATCGGTAGCACGTAGAGGGGGACCCGAGCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
* *
19502706 CTGAGCACCCGGACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTC-AA
839 CTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
* * * *
19502768 GCATACGGAGTTCATTCCCAATCTAAGATCGAACTGGACCGAGGGTTCCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19502833 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCGTCACCGGAGTATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
19502898 ACCTTACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGGCTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGG-TGTGCGCACATGATGT
* * *
19502963 GCGATGGGTGCTGGTATTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19503028 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAATAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
** *
19503093 TGGGGACACTTTTTTCAAATAATCACAAAATCTTGTACACTTCGACTTTTTAGCTGCAA-TTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTT
*
19503157 TGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CGAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCCGAA
* *
19503221 AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
453 AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
19503286 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTACGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
19503351 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCGTATTGATCCA---C--
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
19503411 G--------G---CT-T-G-CG-C--A-T-----------CCCTCCCGCTCGTTTCGTCAGTTGG
648 GCACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGG
* * *
19503447 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAAGAT
713 CTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGAT
* ** * * * * * *
19503512 CTGTAGCACACAGAGGGGGACCCGACCGAACCCCGGGTTACGCATCCTGCCCCTCTGGCCGGCTG
777 CGGTAGCACGTAGAGGGGGACCCGAGCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
*
19503577 AGCGA-CCGTACACTCGTTT--T--G-TG-----GG--T-T-GA---C-TT---AG--T--
842 AGC-ACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
* *
19503612 -CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGCTTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGG-GTTGCGGCAGCACATGCTGG
* * * * * * *
19503676 GCACGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCGCCATCGTCGGAGCATCGTCTGAG
65 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * *
19503741 AACCTGACCGACGGCATTGGGGTTCCGGTGATCAGGGGGGCCGAGGGGGGTGTGCGCACATAATG
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATG
* *
19503806 TGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
19503871 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTATTTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
19503936 ATGGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAACTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** * *
19504001 TATGCATGCCAACAAATTTACAAGGATCACGCCTACCAAGTTTGGGGCCAAAAATCATTT-CGAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-TTTCCGAA
* * * * *
19504065 AAATTTTTAAAAAATCCCGAACC-GAAAAAGTTTTAAAAATCATGAAATATAAAAAACGAGTCAT
453 AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
*
19504129 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
19504194 CGGCATCAGG
Statistics
Matches: 3621, Mismatches: 449, Indels: 179
0.85 0.11 0.04
Matches are distributed among these distances:
843 140 0.04
844 377 0.10
845 6 0.00
847 2 0.00
850 2 0.00
851 1 0.00
854 2 0.00
855 1 0.00
856 1 0.00
858 2 0.00
863 2 0.00
864 1 0.00
866 1 0.00
867 1 0.00
868 144 0.04
869 3 0.00
870 1 0.00
881 1 0.00
882 1 0.00
884 1 0.00
885 2 0.00
886 1 0.00
887 1 0.00
888 2 0.00
891 1 0.00
896 326 0.09
897 129 0.04
898 316 0.09
899 6 0.00
900 66 0.02
901 423 0.12
902 318 0.09
903 385 0.11
904 354 0.10
905 5 0.00
906 133 0.04
907 6 0.00
909 128 0.04
910 329 0.09
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAA
ATTTTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGT
AGCACGTAGAGGGGGACCCGAGCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCA
CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
Found at i:19504335 original size:26 final size:26
Alignment explanation
Indices: 19504305--19504356 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19504295 GTTGACTTAG
*
19504305 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19504331 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19504357 TATCAGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19505256 original size:26 final size:26
Alignment explanation
Indices: 19505208--19505260 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19505198 GTTGACTTAG
* *
19505208 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
19505234 GCATACAGAGTTCATTTC-CAGTCTAA
1 GCATACAGAGTTCA-TTCACAGTCTAA
19505260 G
1 G
19505261 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:19507870 original size:26 final size:26
Alignment explanation
Indices: 19507833--19507885 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19507823 GTTGACTTAG
*
19507833 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
19507859 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
19507885 G
1 G
19507886 ATCGCACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:19508755 original size:26 final size:26
Alignment explanation
Indices: 19508719--19508797 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
19508709 GTTAACTTAG
19508719 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19508745 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19508771 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19508797 G
1 G
19508798 ATTGGACCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.