Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 113 of 117
Found at i:19509662 original size:26 final size:26
Alignment explanation
Indices: 19509632--19509684 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19509622 GTTGACTTAG
19509632 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19509658 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19509684 G
1 G
19509685 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19510565 original size:26 final size:26
Alignment explanation
Indices: 19510529--19510581 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19510519 GTTGACTTAG
* *
19510529 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATTCCAAGTATAA
*
19510555 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTATAA
19510581 G
1 G
19510582 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTATAA
Found at i:19512849 original size:879 final size:883
Alignment explanation
Indices: 19504331--19513438 Score: 10286
Period size: 868 Copynumber: 10.3 Consensus size: 883
19504321 CCCAGTCTAA
* * * *
19504331 GCATACAGAGTTCATTCCCAGTCTAA-TAT-C--AGACCGAACCGAGGGTCACGGCAGCACATGC
1 GCATACGGAGTTCATTCCCAGTCTAAGTATCCAGAGATCGGACCGAGGGTTACGGCAGCACATGC
* * * * *
19504392 TGGGCTTGGGCATTTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCATCG
66 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCG
* * * * *
19504457 GAGAACCTGACCGTCGACATTGGGGTTCTG-CTGATCGGGGGGGTC--GGGGGGTGTGCGCACAT
131 GAGAACCTGACCGACGGCATTGGGGTTCCGAC-GATCGAGGGGGCCGGGGGGGGTGTGCGCACAT
* * * * *
19504519 GATGTGTGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCTTCATCAAACCTGGACA
195 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
19504584 ACTCACACCCCCTTAAAAAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTC
260 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
19504649 TAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGAATT
325 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
19504714 TTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
390 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCC
* * **
19504779 GAAAAAGTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGT
455 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
19504844 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAA
520 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
19504909 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA
585 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * ** * * * *
19504974 CTTGCACATCCCGTCTCTCTAGCCATCGTAGTGCCAGCCAGCCCGCCCGCCCGCTCGTTCCGTCA
650 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCA
* * * ** *
19505039 GTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCAGACCAGACAGAGGGTTGTGATAGC
715 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGGTAGC
* ** * *
19505104 AGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCTTGGCTTGTGCATCCAGCCCCTCTGG-T
780 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCT
* *
19505168 CGGCTGAGTGCTCGCACGCTCGTTTCGTGGGTTGACTTAG
845 -GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
**
19505208 GCATACGGAGTTCATTCATAGTCTAAGCATACAGAGTTCATTTCCAGTCTAAGATCGGATCGAAC
1 GCATACGGAGTTCATTCCCAG--T---C-T--A-AG-T-A--TCCAG----AGATC-G---G-AC
* *
19505273 CGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
44 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
*** * *
19505338 CACCATTACCGGAGCATCGA-CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCAATCG-GGGG
109 CACCATCGTCGGAGCATC-ACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGG
* *
19505401 GCC--AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCC
173 GCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
19505464 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGC
238 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
19505529 TGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTAC
303 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
19505594 ACTTCGAGTTTTTAGCTGAATTTTTTTTTTGCGTGCCAACAAAAATACAAGGATCACGTATACCA
368 ACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * * * * *
19505659 AGTTTGGGGCCAAAACTCTTTTCGAAAAAGTTATAAAAAATCCTGAACCACAAAAAGTTTCAAAA
432 AGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
* *
19505724 ATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
497 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
19505789 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
562 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * *
19505854 CCTACCACACTATCGATCAACGACTTACGCATCCCGTCTCTCTGGCCGGTGTAGT----------
627 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
** * *
19505909 --GCTCGCCCGCTCGTTTTATCAGTTGGGTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAT
692 CCGCTCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-G
* ** * * * * * * * * *
19505972 G-TCAGACTGAGGGTTATAGAAGCAGTATCAGTAGCACGTA-AAGGGGACCCAATCGATCCCCCG
756 GACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGG
* * * * * *
19506035 CTTGCGCACCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCATTTCATGGGTTGACCTAG
821 CTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * ** * * *
19506098 GCATACGAAGTTCATTTCCAGTCTAA-TAT--TG-GACCAAACCAAGGGTTACAGCAGCACATAC
1 GCATACGGAGTTCATTCCCAGTCTAAGTATCCAGAGATCGGACCGAGGGTTACGGCAGCACATGC
* ** *
19506159 TGGGCTCGGGCATGTTCTGGTGCCAAATTTTTCTTCGTCGAGGCACCA---TC--A-C-T----G
66 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCG
* ** * *
19506213 GAGAACCTGACCGACGGCACTGGGGTTTTGACGATCG-GGGGTCC-TGGGGGGTGTGCGCACATG
131 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGGTGTGCGCACATG
19506276 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
196 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
19506341 CTCACACCCCCTTAAAGAGCACTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCT
261 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
19506406 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTT
326 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * **
19506471 TTTTGTGCATGCCAAAAAAAATTCAAGGATCACGTCTACCAAGTTAAGGGCCAAAA-ATCCTTCC
391 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-CCTTCC
*
19506535 GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
455 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * *
19506600 TGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAGAA
520 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
19506665 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGG
585 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * ** *
19506730 CTTGCACATCCCGTCTCTCTAGG-CGACGTAGTGCTC-ACC-AAC-C-CGCCCGCTCGTTTTGAT
650 CTTGCGCATCCCGTCTCTCT-GGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCG-T
* * * *
19506790 -AGTTGGCTTAGGCATATGGAGTTCATTACCAGTCTAAGATTGGACCAGACTGGGGGTTACGGTA
713 CAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGGTA
* * ** *
19506854 GCAGGATCGGTAGCACGCAGAGGGGGTCCCGGTCGATCCCCGGCTTGTGCAT-CCGCCCCTCTGG
778 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
*
19506918 CCT-GCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
843 -CTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * **
19506959 GCATACAGAGTTCATTCCCAGTCTAAG-AT-C-G-GACCAGACTGAGGGTTACGACAGCACATAT
1 GCATACGGAGTTCATTCCCAGTCTAAGTATCCAGAGATCGGACCGAGGGTTACGGCAGCACATGC
* * * * *
19507020 TGGGCTCAGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGAGCACCATCGTCGGAGCATCGCCG
66 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCG
* * * * *
19507085 GAGAACCTGACCGACGGCAATGGGGTTTCGATGATCGGGGGGGCC--GGGGGGTGTGCGCTCATG
131 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGGTGTGCGCACATG
19507148 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
196 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
19507213 -TCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGCCT
261 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
19507277 GAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGT--ACTTCGAGTTTTTAGTTGAATTA
326 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * ** * * *
19507340 TTTTATGCATGCCAACAAAAATACAAGGATCCCGTCCACCATTTTTGGGGCAAAAAATAGC-TCC
391 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACACCTTCC
* * **
19507404 AAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGT
455 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
** *
19507469 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTTAAAAAA
520 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CCATAAA
* * *
19507534 AATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACG
584 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
19507599 GCTTGCGCATCTCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCG-TCGGCCCGTTCGTTTCGT
649 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTC-GCCCGCTCGTTTCGT
* * * * * *
19507663 TAGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTCACGGCA
713 CAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGGTA
* * * * *
19507728 ACAGGAT-GGCAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCTCATCCCACCGCTCTGG
778 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
*
19507792 -TCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
843 CT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
19507833 GCATACAGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGCACCGGAC
1 GCATACGGAGTTCATTCCCAG--T---C-T---AAG-T-A-T-CCAG----AGATCGGACC-GA-
* **
19507898 CGAGGTTAACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTCTCTTCACCGGGG
47 -G-GGTT-ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * *
19507963 CACCA---TC---G-----CCGGTGAACCTGACTGACGGTATTGGGGTTCCGACGATCG-GGGTG
109 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGG-G
* *
19508016 GCCGGGGGGGGTGTGCACACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCC
173 GCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * **
19508081 TATCACTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTAT
238 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
19508146 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
303 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
19508211 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCATGTCTACCAA
368 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* *
19508276 GTTTGGGGGCAAAA-ATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAA
433 GTTTGGGGCCAAAACA-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
* * **
19508340 ATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGATGATT
497 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * **
19508405 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACCCAGAAATATGAAGATGTACCTAAAATCA
562 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * *
19508470 CCTATCACCATATTGATCCACGGCTTGCGCATCCCATCTCTCTAGCCGGCGTAGTGCCCGCCCGC
627 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * *
19508535 CCGCT-------T-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGT
692 CCGCTCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * * * *
19508592 ACCAGACCGAGGGTTATGGTAGCAGGATTGGCAGCACGTAGAGGGGGACCTGGCTGATCCCCGAC
757 ACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * * * *
19508657 TTGCGCATCCGGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTAACTTAG
822 TTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * ** *
19508719 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCATTCTAAGCATACGGAGTTC
1 GCATACGGAGTTCATTCCCAGTCTAAGTATCCAGAG---A-TCGGA--C----C-GA-GG-GTT-
* * ** *
19508784 ATTCCAAGTCTAAGATTGGACCGGACTGAGGGTCGCAGCAGCACATGCTGGGGTCGGGCATGTGC
52 A---C--GGC----A--GCACATG-CTG-GGCTCG--G--G--CA---T---GT---------GC
* **
19508849 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACGTGACCGGTGG
83 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGG
*
19508914 CATTGGGGTTCCGACGATC-AGGCGGGCC--GGGGGGTGTGTGCACATGATGTGCGATGGGTGCT
148 CATTGGGGTTCCGACGATCGAGG-GGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
19508976 GGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCACAACCCCTTAAA
212 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
**
19509041 GAGCATTTGAGATTTTACAGGTTTATTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
277 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
19509106 TTTCAAATGGTCACAAAATCTTGTAAACTTCGACTTTTTGGCTGAATTTTTTTTTGCATGCCAAC
342 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *** *
19509171 AAAAATACAAGGATAATGTCTACCAAGTTTAGGGCCAAAACTTTTTCCGAAAAAATTTAAAAAAA
407 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAA
* * *
19509236 TCCTGAACCGCAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACT
472 TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
19509301 TCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGGCATTGGCATGCAG
537 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
19509366 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
602 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * * *
19509431 TCTCGTCGACGTAGTGCCCGCCCG--C-C-CGCCCACTCGTTTTGTCGGTTGGCTTAGGCATACG
667 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACG
* * * * * *
19509492 TAGTTCATTCCCAGTCTAAGATTGGACCAAACTGAGAGTTAC-G--GCAGCAT--GTAG-A-G--
732 GAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGCA
* * ** *
19509548 GA---GGACCCGACCGATCCCCGGCTTGTGCATCCCACCCCTCTGGCAAGCTGAGCGACCGCACG
797 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACG
* * *
19509610 CTCATTTCATGAGTTGACTTAG
862 CTCGTTTCGTGGGTTGACTTAG
19509632 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG-T-A-T-CCAG----AGATC-G----GAC
* * *
19509697 CGAGGGTTACGGCAGTACATGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGGT-GGG
44 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GTCGGG
** * * * **
19509761 GCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGTTTTCGGTGATC-AGGAG
108 GCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGG-G
* * *
19509825 GGCTGAAGGGGGTGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT--CA
172 GGCCG--GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-
*
19509888 CCCCTATCGCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
234 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
19509953 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGATCACAAAATCAT
299 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
19510018 GTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAACAAAAATACTAGGATCACATCTG
364 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * *** * * * * * *
19510082 CCAAGTTTGGAGCCCAAACTTATTCCGAATAAATTTTAAAAAATCTCAAACTGTAAAAAGTTTCG
429 CCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
*
19510147 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACC
494 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * * * *
19510212 ATTGTATGAATTTACAAGCCATAAAAATAGTATTGGCACGCTGAAATATGAAGAGGAGCCTAAAT
559 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* *
19510277 CCACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGT----GCC
624 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * *
19510338 CG--C-C-CGCCCGCTCGTTTCGTCAGTTGGGTTAGGCATACGGAGTTCATTCCTACTCTAAGAT
689 CGCCCGCTCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * *** * * * * * * *
19510399 TGGACCGGACTGAGAGTTACAACAGCAGGATCAGTAGCATGTACAGGGGGACCTGGCCGATCCCC
754 CGGACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
* * * * * ** *
19510464 AGATAGCGCATCCCACCCCTTTGGCAAGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
819 GGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
19510529 GCATACGGAGTTCATTCCCAGTATAAGCATACAGAGTTCATTCCAAGTCTAAGATTGGACCGGAC
1 GCATACGGAGTTCATTCCCAG--T---C-T--A-AG-T-A-TCC-AG----AGA-T----CGGAC
** * * * *
19510594 CGAGGGTTACGGCAATACATGCTAGGCTCAGGCATGTGATGGTGCCGCATTTTTCTTCGGCGGGG
44 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * *
19510659 CACCATCGTCGGAGCATCGCCGGAGAACCTAACCGGCGGCATTGGGTTTCCGACGATC-AGGGGG
109 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGA-GGGG
* *
19510723 GCCGAGGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCCGGTACTTGGCCTTTATATTGGCCC
173 GCCG-GGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
19510788 CCTATCGCTCATCAAACCTCGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTT
236 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
19510853 GCTGCCAGTAGCCATGAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGT
301 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
19510918 ACAATTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
366 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* ** * * ** **
19510983 GAGTTTGGGGCCAAAATTCCTTCTGAAAATATTTTAAAAAATCTTGAACCATAAAAAGTTTCAAA
431 AAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
*
19511048 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
496 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * * *
19511113 TTTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGACTAAACAC
561 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* **
19511178 ACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCG
626 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * * * * * ** *
19511243 TCTGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGAGTAAGATCA
691 CCCGCTCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * * * * * *
19511308 GACCGGA-TCCAGGGTTGCGATAGCAGGTTAGGTAGCACACAAAAGGGGACCCGATCGATCCCCG
756 GACCAGACT-GAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * *** * * * *
19511372 GCTTTCGCATCCTGCGTTTCTGGCCGGCTAAGCGCCCGCACGTTCGTTTCGTGGGCTGACTTAG
820 GCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
** * *
19511436 GCATACATAGTTCATTCCCAATCTAAG-AT-C-G-GATCGGACCGAGGGTTGCGGCAGCACATGC
1 GCATACGGAGTTCATTCCCAGTCTAAGTATCCAGAGATCGGACCGAGGGTTACGGCAGCACATGC
* * ** *
19511497 TGGCCTCGAGCATGTGCTGGTGCCATATTTTTCTTTGTCGGGGCACCA---TC---G--T---CG
66 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCG
* * * * * ** *
19511551 GAGAACCTGACCGACGGTATTAGGGTTTCAACGATCGAAGGGGCCGATGGGGGTATGCGCACATG
131 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGGTGTGCGCACATG
* * * *
19511616 ATGTGCGATGGGTG-TCGGTACTTGGCGCTTATACTGGCCCCTTATCCCTCTTCAAACCTCGAGA
196 ATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
19511680 ACTCACACCCCCTTAAAGAGCATTTGAGGTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
260 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
19511745 TAAAATGCGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT
325 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
*
19511810 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCC
390 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCC
* * * * * *
19511875 GAAAATATTTTAAAAAATCTCAAACCGTAAAATGTTTCGAAAATCATGAAAAATAGAAAACGAGT
455 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
19511940 CGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
520 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
19512005 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGG
585 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * ** *
19512070 CTTGCGCATCCCGTCTCTTTGGCCGGCGTAGAGCCCGCCCGCCCGCTCGCCCGCTTGTTTTATCG
650 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCA
* * *
19512135 GTTGGCTTAGGCATACGGAGTGCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGGTAGT
715 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGGTAGC
* * * * *
19512200 AGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCCGACT
780 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCT
** * *
19512265 GATTGAGTGCCCGCACGCTTGTTTCGTGGGTTGACTTAG
845 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
19512304 GCATACGGAGTTCATTCCTAGTCTAAG-AT-C-G-GATCGGACTGAGGGTTGCGGCAGCACATGC
1 GCATACGGAGTTCATTCCCAGTCTAAGTATCCAGAGATCGGACCGAGGGTTACGGCAGCACATGC
* * * * * *
19512365 TGGGCTCGGGCTTGTGCTGGTGCCGTATTTTTTTTCGTTGGGGCATCATCGTCGGAGCATCACCA
66 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCG
* * ** *
19512430 GAGAACCTGACCGATGACATTGGGGTTCCGACGATCGACAGGGCCGGGGGGGGTGTGCACACATG
131 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGGTGTGCGCACATG
19512495 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
196 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
19512560 CTCACATCCCTTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
261 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
19512625 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
326 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
19512690 TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTCCA
391 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCG
* * *
19512755 AAAAAATTTTAAAAATTCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTT
456 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * * *
19512820 GTCTTGTCATGAAACTTGACATGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAA
521 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
19512885 TGGCATTGGCACGCAGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACGGC
586 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * ** *
19512950 TTGCGCATCCCGTCTCTCTGGTCGGTGTAGTGCCCGCCCGTCCGCCCTACCGCTCATTTCGTCAG
651 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCAG
* * * * * * * **
19513015 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCGAATCAGATTGAGGATTACGGCAATA
716 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGGTAGCA
* * * * *
19513080 GGATCGGCAGCAC-CTAGAAGGGGATCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGC-
781 GGATCGGCAGCACGC-AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCT
* *
19513143 --C---G-G-CTGTACGCTCGTTTCGTGGGTTGACTTAG
845 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * * ** ** * *
19513175 GCATACGAAGTTCATTTCGAGTC-AAGCATACGGAGTTC--ACTC-ACAGTCTA--AAATCAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGTATCCAGAGATCGGAC-CGAGGGT-TACGGCAGCACAT
* * * * * * ** ***
19513234 -C--GGATCGAGG-GT-TAC--GT-CAGCA-TGTGCTGGGCTC-GGGCACCATTACCGGAGCATC
64 GCTGGGCTCG-GGCATGTGCTGGTGCCGCATTTTTCTTCG-TCGGGGCACCATCGTCGGAGCATC
** * * * * * * *
19513289 GTCGGAGAACCTGATCGACGGTATTGGGGTTTCGATGATTG-GGGGGCCTTGAGGGGGTGTGCGC
127 ACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCC-GGGGGGGGTGTGCGC
*
19513353 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTC
191 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
19513418 GAGAACTCACACCCCCTTAAA
256 GAGAACTCACACCCCCTTAAA
19513439 AAACATACGA
Statistics
Matches: 7097, Mismatches: 867, Indels: 548
0.83 0.10 0.06
Matches are distributed among these distances:
853 302 0.04
854 205 0.03
857 1 0.00
858 1 0.00
859 1 0.00
860 1 0.00
861 220 0.03
862 33 0.00
863 146 0.02
864 70 0.01
865 2 0.00
866 1 0.00
867 3 0.00
868 723 0.10
869 196 0.03
870 139 0.02
871 159 0.02
872 127 0.02
873 55 0.01
874 148 0.02
875 3 0.00
876 3 0.00
877 22 0.00
878 10 0.00
879 641 0.09
880 3 0.00
881 66 0.01
882 2 0.00
883 6 0.00
884 2 0.00
885 147 0.02
886 109 0.02
887 83 0.01
888 13 0.00
889 298 0.04
890 244 0.03
891 219 0.03
892 103 0.01
893 110 0.02
894 184 0.03
895 7 0.00
896 13 0.00
897 284 0.04
898 163 0.02
899 260 0.04
900 53 0.01
901 2 0.00
902 206 0.03
903 389 0.05
904 3 0.00
905 1 0.00
906 3 0.00
907 161 0.02
908 5 0.00
909 2 0.00
910 4 0.00
912 31 0.00
913 89 0.01
915 3 0.00
916 4 0.00
918 5 0.00
919 4 0.00
920 3 0.00
921 472 0.07
922 11 0.00
923 41 0.01
924 5 0.00
925 63 0.01
926 4 0.00
927 1 0.00
929 1 0.00
930 2 0.00
931 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (883 bp):
GCATACGGAGTTCATTCCCAGTCTAAGTATCCAGAGATCGGACCGAGGGTTACGGCAGCACATGC
TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCG
GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCG
AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCAG
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGGTAGCA
GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTG
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:19513840 original size:26 final size:26
Alignment explanation
Indices: 19513810--19513862 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19513800 GTTGACTTAG
19513810 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
*
19513836 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
19513862 G
1 G
19513863 ATCAAATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:19515191 original size:873 final size:873
Alignment explanation
Indices: 19513836--19517437 Score: 4241
Period size: 894 Copynumber: 4.1 Consensus size: 873
19513826 CCCAGTCTAA
** ** * **
19513836 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATTGGACCAAGGGTTACGCCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
* * * *
19513901 CTCAGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGG---CA----C----CATCGTCAAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGA
** ** * * *
19513955 ACCTGACCGACGGTATTTTAGTTTCGGCGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGACA-TTGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGC
* * *
19514020 GATGGGTGTTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
19514085 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATT
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATA
* * * * *
19514150 GGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTTGAATTTTCAGCTGACTTTTTTTAT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* * * * * *
19514215 GCATGCCAAAAAAAATGCAAGGATCACATCTAACAAGTTTGGGGCCAAAACTACTTCTG-AAAAA
390 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGTGCCAAAACT-CCTCCGAAAAAA
* ** *
19514279 ATTTTAACAAATCCCGAACAACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
19514344 GCCATGAAAGTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
19514409 TTGGCATGCAAAAATATGAAGATGTGCCTAAACTCACATACCACCCTATCGATCCACGACTTTCA
584 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTTCG
* * * *
19514474 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCAC-CCGCCCGCTCGTTTCATCGGTTGGCTTA
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCTCGCCGCCCGCTCGTTTCGTCAGTCGGCTTA
* * * * * * *
19514538 GGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGATTGAGACTTACGGAAGCAGGATCGGC
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGAGTTGCGGAAGTAGGATCAGC
* * * *
19514603 AGCACGCAGAGGGGGAACCGATCGATTCCC-GGCTTGCGCATCTCGCCCCTCTGGTCGATTGAGC
779 AGCACGCAGAGGGGGAACCGACCGA-TCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
* *
19514667 GCCCGTACG-TCCATTTCGTGGGTTCACTTAG
843 ACCCGAACGCT-CATTTCGTGGGTTCACTTAG
* * *
19514698 GCGTACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTCACGGTAGCACATGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
* *
19514763 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGA
* *
19514828 ACCTAACCGACGACATTCGGGTTCCGGCGATCGGGGGGGTCGGGGGG-GTGCACACAGGTGATGT
131 ACCTGACCGACGACATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCACACA--TGATGT
** *
19514892 GCGATGGGTGCCAATACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
** *
19514956 CACCCCCTTAAAGAGCATTTGAGATTTTGTAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
19515021 TAGGGACACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * * *
19515086 GTGCATGCCAACAAAAATACAAGGATAACGTCTACTATGTTTGATGCCAAAACTCCTTTC-AAAA
388 ATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGTGCCAAAACTCC-TCCGAAAA
* * * *
19515150 AAATTTTAAAAAACCCCGAACCGCAAAAAGTTTAAAAAATCATGAAAAATTGAAAACGAGTTGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
19515215 TTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * ** *
19515280 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGGTTA
582 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTT
* * * * * * *
19515345 CGCTTCCCGTATCTCTGGCCGACGTAGTGCCCACCCGCTCGACCGCTCGCTCGATTCGTCAGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-GCC-CTCG-CCGCCCGCTCGTTTCGTCAGTCG
* * * * * * * *
19515410 GCTTAGGCATACAGAGTTCATTCCCAGTATAAGATCAGACCAAACCGAGGGTTGCGGTAGAAAGA
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGAGTTGCGGAAGTAGGA
* * * ** * * **
19515475 TCAGCAGCACGTAGTGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCTTCTGGTCGGTT
774 TCAGCAGCACGCAGAGGGGGAACCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACT
* *
19515540 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATATGAAG
839 GAGCACCCGAACGCTCATTTCGTGGGTT--C---A-C-T-T--AG
* * * *
19515585 TTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACTGAGGGTTGC
1 ----------------GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTAC
* *
19515650 GGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-ACTGGGGCACCATCAC
50 GGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGC
* * * * * **
19515714 CGGAGCATCATCGGAGAACTTGACCGGCGACATTGGGGTTTCGATGATCGGGGGGGCCGGGGGGT
114 CGGAGCATCGTCAGAGAACCTGACCGACGACATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGT
* * *
19515779 GTGCGCCCATGATGTGCAATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
178 GTGCACACATGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
** * *
19515844 AACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAATAGCCA
243 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
19515909 TTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGATCACAAAATCATGTACACTTCGAGTTTT
308 TTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * **
19515974 TAGCTGAATTTTTTTGTGCATGCCAAC-AACATACAAGGATCACATCTACCAAGTTTGGTTTCAA
373 TAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGTGCCAA
* * *
19516038 AACTGCTCCGAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATA
438 AACTCCTCCGAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATA
* *
19516103 GAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGA
503 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * *
19516168 AGCCATAAAAATGGCTTTGGCATGCAGACATATGAAGATGTGCCTAAACCCACCTACCACCCTAC
568 AGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
*
19516233 CGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCT-----CCCGCTCGT
633 CGATCCACGACTTTCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCTCGCCGCCCGCTCGT
** * * *
19516293 TTCGTCAGTCGGCTTAGGGGTATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTG
698 TTCGTCAGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGAGTTG
* * * * *
19516358 C-GATAGTAGGATCAGCACCATGCAGAGGGGG-ACTCGACCGAATCCC-GACATACGCATCCCGC
763 CGGA-AGTAGGATCAGCAGCACGCAGAGGGGGAAC-CGACCG-ATCCCTGGCTTGCGCATCCCGC
* * * * * * *
19516420 CCCTCTGGCCGACTGTGCACTCGGACGCTCGTTTTGTGGGTTGACTTTG
825 CCCTCTGGCCGACTGAGCACCCGAACGCTCATTTCGTGGGTTCACTTAG
* *
19516469 GCATACAGAGTTCATTCCGATTCTAAGCATACAAAGTTCATTCACAGTCTAAGATCGGATCGAAC
1 GCATAC-G-G---A----G----T-----T-C--A-TTC---C-CAGTCTAAGATCGGACCGGAC
* * * *
19516534 CGAGGGTT-CTGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGG
40 CGAGGGTTAC-GGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * * * *
19516598 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGTTCCGGGGATCGGGGGGA
104 GCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGACGACATTGGGTTCCGGCGATCGGGGGGG
** *
19516663 TGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
169 CCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTAT
*
19516728 CCCTCATCAAACCTCAAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
234 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
19516793 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
299 CAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
19516858 TCGATTTTTTAGCTGAATTTTTTTATGCATGCCAACCAAAATACAAGGATCACGTCTACCAAGTT
364 TCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTT
* * * * *
19516923 T-TTGGCCAAAACTCCTTCCG-AAAAAATTTTAAAATATCCCGAACTGCAAAAGGTTTCAAAAAT
429 TGGT-GCCAAAACTCC-TCCGAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAAT
*
19516986 CATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
492 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
**
19517051 ATGAATTTACAAGCCATAAAAATTTCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACC
557 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACC
* * * * *
19517116 TACCACCCTATCGATTCACGGCTTGT-GCATCCCATCCCTCTGGCTGGCGTAGTGCCCGCCCGTT
622 TACCACCCTATCGATCCACGACTT-TCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC--T
* * *
19517180 CGTCCGCCCGCTCGTTTCGTCGGCCGGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
684 CG-CCGCCCGCTCGTTTCGTCAGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* ** **
19517245 CCAGA-CGA-AGGATTGCGGTAGTAGGATTGGCAGCACGCAGAGGGGGATGC-AGCCGATCCCTG
748 CCAGATCGAGA-G-TTGCGGAAGTAGGATCAGCAGCACGCAGAGGGGGAACCGA-CCGATCCCTG
* * * * *
19517307 GCTTGCGTATCCCGCCCCTCTGGCCGGCTGAGCACTCGAACGCTCATTTCGTAGGTTGACTTAG
810 GCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGAACGCTCATTTCGTGGGTTCACTTAG
* ** ** *
19517371 GCATACAGAGTTCATTCCCAGTCTAAGATAAGACTAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
19517436 CT
66 CT
19517438 TGAGCATTGC
Statistics
Matches: 2331, Mismatches: 307, Indels: 190
0.82 0.11 0.07
Matches are distributed among these distances:
862 90 0.04
865 2 0.00
868 6 0.00
869 2 0.00
870 1 0.00
872 11 0.00
873 462 0.20
874 22 0.01
875 2 0.00
876 43 0.02
877 149 0.06
878 1 0.00
879 1 0.00
880 3 0.00
881 2 0.00
882 1 0.00
883 2 0.00
884 3 0.00
885 1 0.00
886 2 0.00
887 4 0.00
888 1 0.00
889 3 0.00
890 3 0.00
893 238 0.10
894 492 0.21
895 10 0.00
896 1 0.00
897 1 0.00
900 3 0.00
901 13 0.01
902 416 0.18
903 333 0.14
904 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (873 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGA
ACCTGACCGACGACATTGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCG
ATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGTGCCAAAACTCCTCCGAAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTTCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCTCGCCGCCCGCTCGTTTCGTCAGTCGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGAGTTGCGGAAGTAGGATCAGCAG
CACGCAGAGGGGGAACCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACC
CGAACGCTCATTTCGTGGGTTCACTTAG
Found at i:19515612 original size:26 final size:26
Alignment explanation
Indices: 19515572--19515627 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
19515562 TGGGTTGACT
*
19515572 TAAGCATATGAAGTTCATTCCCAATC
1 TAAGCATACGAAGTTCATTCCCAATC
* *
19515598 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAATC
19515624 TAAG
1 TAAG
19515628 ATCGAACAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAATC
Found at i:19516519 original size:26 final size:26
Alignment explanation
Indices: 19516469--19516521 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19516459 GTTGACTTTG
* *
19516469 GCATACAGAGTTCATTCCGATTCTAA
1 GCATACAAAGTTCATTCCGAGTCTAA
19516495 GCATACAAAGTTCATTCAC-AGTCTAA
1 GCATACAAAGTTCATTC-CGAGTCTAA
19516521 G
1 G
19516522 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCGAGTCTAA
Found at i:19518803 original size:820 final size:821
Alignment explanation
Indices: 19517666--19520212 Score: 2494
Period size: 820 Copynumber: 3.0 Consensus size: 821
19517656 TTTTCAAATG
* * * *
19517666 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACA
1 GTCACAAAATCTTGTACAGTTCGAGTTTATAGCTGAATTTTTTTATGCATGCCAACAAAAATACA
* * ** * * *
19517731 AGGATCAGGTCTACCAAGTTTGGGGCCAAAAC-ACTCTCCGAAAAAATTTTAAAAAATCTCGAAC
66 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCTTTGAAAAAATTTTAAAAAATCACAAAT
* *
19517795 CGTAAAAAGTTTCAGAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
131 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * *
19517860 AGTCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAAAATGA
196 AGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
** * *
19517925 AGATGTGCCTAAACCCACCTAATACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCG
261 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCG
*
19517990 GCGTAGTGCCCGCCCGACCGTCCGCCCGCTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCAT
326 GCGTAGTGCCCGCCC-ACCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * **
19518055 TCCCAGTCTAAGATCAGATC-GAACTGAGGGTTGTGGCAGCAGGATCAGTAGCACGCAGAGGGGG
390 TCCCAGTCTAAGATCAGATCAGAAC-AAGAGTTACGGCAGCAGGATCAGTAGCACGCAGAGGGGG
** ** * * * * * *
19518119 ACTTGGCCGATCCTCGGCTTGCGCATCCTACCTTTCTGGTCGGTTGAGCACTCGCACGCTCGTTT
454 ACCCGATCGATCCCCGGCTTGCGCATCCCACCCTTCTGG-CGGCTGAGCACCCACACGCTCGTTT
* * * *
19518184 CATGTGTTGAATTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGGACTGGATCGAGGGTTGTG
518 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCG
* *** * *
19518248 GTAGCACATGCTGGGCTCAGGCAAAAGCTGGTGCCGTATTTTTCTTCACCGGGGCATCATCTTTA
583 GCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCTTTG
* * *
19518313 GAGCATCACCGAGAACCTGATCGACGGCATTGAGGTTCTGGCGATCGGAGGGGCCTGGGGGTGCG
648 GAGCATCACCGAGAACCTGACCGACGGCATTGAGGTTCTGGCGATCGG-GGGGCCGGGGGGTGTG
* * * *
19518378 CGCACATGATGTACGATGGGTGCTGGTACTTAGCCCTTATGTTGGCCCCCTATCCCTCATCAAAC
712 CACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
19518443 CTCAAGAACTCACACCCCCTTAAAGAGCATTCGAGATTTTACA-T
777 CTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGT
*
19518487 GTCACAAAATCTTGTACAGTTCGAGTTTCTAGCTGAATTTTTTTATGCATGCCAACAAAAATACA
1 GTCACAAAATCTTGTACAGTTCGAGTTTATAGCTGAATTTTTTTATGCATGCCAACAAAAATACA
* *
19518552 AGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCT-TTTGAAAAAATTTT-AAAAATCCCAAAT
66 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCTTTGAAAAAATTTTAAAAAATCACAAAT
* *
19518615 CGCAAAAAGTTTCAAAAAGCGTGAAAAATAGAAAACGAGTCTTCTTGCCATGAAACTTCACGTGA
131 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * **
19518680 TGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACGTAGAAATATGA
196 AGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
* * *
19518745 CGATGTGCATAAACCCACCTACCACCCTATCGATCTACGGCTTGTGCATCCCGTCTCTCTGGCCG
261 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCG
* * * *
19518810 ACGTAGTGCCCGCCCATCCGCCCGCCCACTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCAT
326 GCGTAGTGCCCGCCCA-CCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
** * *
19518875 T-CCAGTCTAAGATTGGATCAGATCAAGAGTTACGGCAGCAGGATC-GACAGCACGCAGAGGGGG
390 TCCCAGTCTAAGATCAGATCAGAACAAGAGTTACGGCAGCAGGATCAG-TAGCACGCAGAGGGGG
* * * *
19518938 ACCCGATCGATCCCCAGCTTACGCATCCCCCCCCTCTGGCAGGCTGAGCACCCACACGCTCGTTT
454 ACCCGATCGATCCCCGGCTTGCGCATCCCACCCTTCTGGC-GGCTGAGCACCCACACGCTCGTTT
*
19519003 CGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTAT
518 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C----T
* * *
19519068 AGGATTGGGCCGGACCAAGGGTTGCAGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCATAT
568 -GGA-T----C-G----AGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGTAT
* * * * * *
19519133 TTCTCTTCGCCGAGGCACCATCGTCGGAGCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGA
622 TTTTCTTCACCGGGGCACCATC-T-------T--T-GGAGCATC-ACCGAGAACCTGACCGACGG
* * *
19519198 CATTGGGGTT-TCGACGATCGGGGGGGTCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGG
675 CATTGAGGTTCT-GGCGATC-GGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGG
* *
19519262 TATTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACACCCCCTTAAAGA
738 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
19519327 GCATTTGAGATTTTACAGGTTT
803 GCATTTGAGATTTTACA-G--T
** * * * ** * * *
19519349 GCTGC-CAGTAGCTAT-TAAAGTATCTGA---AAT-GGGGACATTTCTTTCA--AATGGTC-AC-
1 G-T-CACAAAATCT-TGTACAGT-TC-GAGTTTATAGCTGA-ATTT-TTTTATGCAT-GCCAACA
** * * * *
19519404 AAAAT-CTTGTA-CACTTTGAGTTTTTAGCTGAAGTTTTTTTGTGCAAGCCAAAAAAATACAAGG
58 AAAATACAAGGATCAC-----G--TCTA-C-CAAG----TTTG-G--GGCC----AAA-AC----
** * * * **
19519467 ATCATGTCTACCATGTTTGGGGCCAAAACTCTTTCCGAAAAAACTTTAAAAAAT-GCCGAATCGT
98 -TC----CT--C---TTT---GAAAAAA-T-TTT---AAAAAA---TCACAAATCG-CAAAAAGT
* * *
19519531 AAATAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCGCGTGAAGG
141 -------TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
19519596 CTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTAGCACACAGAAATATGAAGA
199 CTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGA
* * *
19519661 TGTGCCTCAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATACCGTCACTCTGGCCGGCG
264 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCG
* * *
19519726 TAGTGCACGCCCA-C-T-----CGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCT
329 TAGTGCCCGCCCACCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * *
19519784 AGTCTAAGATCAGA-CTGGACCAAGCGTTACGGCAGCAGGATCAGTAGCACGCAGAGGGGGACCC
394 AGTCTAAGATCAGATC-AGAACAAGAGTTACGGCAGCAGGATCAGTAGCACGCAGAGGGGGACCC
* * **
19519848 GATCGATCCCCGGCTTGC-CTATCCCACCCTTATGGCCGGCTGAGCGCCCTTACGCTCGTTTCGT
458 GATCGATCCCCGGCTTGCGC-ATCCCACCCTTCTGG-CGGCTGAGCACCCACACGCTCGTTTCGT
* *
19519912 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCA
521 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCA
* * * * *
19519977 GCGCATGCTGGGCTCAAGCGTGTGCTGGTGCCGTATTTTTCTTCACCAGGGCACCATCGTTGGAG
586 GCACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCTTTGGAG
*
19520042 CATCACCGAAGAACCTGACCGACGGCATT-AGGGTTCTAGCGATCGGGGGGCCGGGGGGTGTGCA
651 CATCACCG-AGAACCTGACCGACGGCATTGA-GGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCA
*
19520106 CACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
714 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * * *
19520171 CGAGGACTCACACCCCTTTAAAGAACATTTGAGATTTTACAG
779 CAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
19520213 GTTTGCTGCC
Statistics
Matches: 1421, Mismatches: 183, Indels: 198
0.79 0.10 0.11
Matches are distributed among these distances:
818 2 0.00
819 125 0.09
820 258 0.18
821 105 0.07
822 3 0.00
823 1 0.00
824 1 0.00
827 1 0.00
831 1 0.00
835 1 0.00
836 3 0.00
837 1 0.00
841 1 0.00
842 1 0.00
846 58 0.04
847 1 0.00
854 1 0.00
856 1 0.00
857 8 0.01
858 148 0.10
859 5 0.00
860 5 0.00
861 7 0.00
862 9 0.01
863 16 0.01
864 4 0.00
865 5 0.00
866 1 0.00
867 4 0.00
868 120 0.08
869 36 0.03
870 2 0.00
871 3 0.00
872 2 0.00
874 3 0.00
878 3 0.00
879 2 0.00
880 60 0.04
884 3 0.00
885 1 0.00
888 2 0.00
890 3 0.00
894 3 0.00
895 1 0.00
897 5 0.00
898 1 0.00
899 4 0.00
902 1 0.00
903 6 0.00
904 1 0.00
905 42 0.03
906 155 0.11
907 2 0.00
911 1 0.00
913 182 0.13
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (821 bp):
GTCACAAAATCTTGTACAGTTCGAGTTTATAGCTGAATTTTTTTATGCATGCCAACAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCTTTGAAAAAATTTTAAAAAATCACAAAT
CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCG
GCGTAGTGCCCGCCCACCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGATCAGAACAAGAGTTACGGCAGCAGGATCAGTAGCACGCAGAGGGGGAC
CCGATCGATCCCCGGCTTGCGCATCCCACCCTTCTGGCGGCTGAGCACCCACACGCTCGTTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCA
GCACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCTTTGGAG
CATCACCGAGAACCTGACCGACGGCATTGAGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCACA
CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGT
Found at i:19519167 original size:11 final size:11
Alignment explanation
Indices: 19519151--19519183 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
19519141 GCCGAGGCAC
19519151 CATCGTCGGAG
1 CATCGTCGGAG
19519162 CATCGTCGGAG
1 CATCGTCGGAG
19519173 CATCGTCGGAG
1 CATCGTCGGAG
19519184 AACCTGACCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:19520645 original size:321 final size:321
Alignment explanation
Indices: 19520042--19520666 Score: 957
Period size: 321 Copynumber: 1.9 Consensus size: 321
19520032 ATCGTTGGAG
*
19520042 CATCACCGAAGAACCTGACCGACGGCATTAGGGTTCTAGCGATCGGGGGGCCGGGGGGTGTGCAC
1 CATCACCGAAGAACCTGACCGACGGCATTAGGGTTCGAGCGATCGGGGGGCCGGGGGGTGTGCAC
* *
19520107 ACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
66 ACATGATGTGCGATGGGTCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * *
19520172 GAGGACTCACACCCCTTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
131 GAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAA
* * * *
19520237 TGTCTAAAATGGGGAAACTTTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
196 TGTCTAAAATGGGGAAACTTTTTGCAAATGATCACAAAATCTTGCACACTTCGAGTTTTTACCTG
* *
19520302 AATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGCTTGCCGGGGCAC
261 AATTTTTTTATGCATACCAACAAAAATACAAGGATCACATCTACCAAGCTTGCCGGGGCAC
* * * * *
19520363 CATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGTCGGGGGGTGTGC
1 CATCACCGAAGAACCTGACCGACGGCATTAGGGTT-CGAGCGATC-GGGGGGCCGGGGGGTGTGC
* *
19520427 ACACATGATGTGCGAT-GGTCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATGAAACC
64 ACACATGATGTGCGATGGGTCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
19520491 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCGAGTAGCCATTAA
129 TCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAA
* * * *
19520556 AATGTCTGAAATGGTGACACTTTTTGCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTACC
194 AATGTCTAAAATGGGGAAACTTTTTGCAAATGATCACAAAATCTTGCACACTTCGAGTTTTTACC
* *
19520621 TGAATTTTTTTATGCATGCCAACAAGAATACAAGGATCACATCTAC
259 TGAATTTTTTTATGCATACCAACAAAAATACAAGGATCACATCTAC
19520667 GAAGTTTGGG
Statistics
Matches: 273, Mismatches: 29, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
321 238 0.87
322 35 0.13
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (321 bp):
CATCACCGAAGAACCTGACCGACGGCATTAGGGTTCGAGCGATCGGGGGGCCGGGGGGTGTGCAC
ACATGATGTGCGATGGGTCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAA
TGTCTAAAATGGGGAAACTTTTTGCAAATGATCACAAAATCTTGCACACTTCGAGTTTTTACCTG
AATTTTTTTATGCATACCAACAAAAATACAAGGATCACATCTACCAAGCTTGCCGGGGCAC
Found at i:19521162 original size:26 final size:26
Alignment explanation
Indices: 19521125--19521177 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19521115 GTTGACTTAG
19521125 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
19521151 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19521177 G
1 G
19521178 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19522923 original size:26 final size:26
Alignment explanation
Indices: 19522887--19522939 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19522877 GTTGACTTAG
19522887 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19522913 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19522939 G
1 G
19522940 ATAGACAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19523147 original size:131 final size:130
Alignment explanation
Indices: 19522914--19523175 Score: 355
Period size: 131 Copynumber: 2.0 Consensus size: 130
19522904 CCAGTCTAAG
*
19522914 CATACGGAGTTCATTCCCAGTCTAAGATAGACAAGATCGAGGGCTGCGACAGCACATGATGGGCT
1 CATACGGAGTTCATTCCCAGTCTAAGATAGACAAGACCGAGGGCTGCGACAGCACATGATGGGCT
** * *
19522979 CGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCATCGGAGAAC
66 CGAGCATGTGCTGGTGCCCCATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCATCGAAGAAC
* * * * *
19523044 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGATAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGAT-AGACAAGACCGAGGGCTGCGACAGCACATGATGGGC
* * * * * *
19523109 TTGGGCATGTG-TCGGTGCCCCATTTTTCTTCATCGGGGCACTATCGTCGGAGCATCGTCGAAGA
65 TCGAGCATGTGCT-GGTGCCCCATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCATCGAAGA
19523173 AC
129 AC
19523175 C
1 C
19523176 TGACCGACGG
Statistics
Matches: 114, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
130 29 0.25
131 85 0.75
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (130 bp):
CATACGGAGTTCATTCCCAGTCTAAGATAGACAAGACCGAGGGCTGCGACAGCACATGATGGGCT
CGAGCATGTGCTGGTGCCCCATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCATCGAAGAAC
Found at i:19524796 original size:26 final size:26
Alignment explanation
Indices: 19524759--19524811 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19524749 GTTGACTTAG
*
19524759 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19524785 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19524811 G
1 G
19524812 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19526585 original size:26 final size:26
Alignment explanation
Indices: 19526535--19526587 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19526525 GCTGACTTGG
* *
19526535 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAATTCATTCTCAATCTAA
19526561 GCATACGGAATTCATT-TCCAATCTAA
1 GCATACGGAATTCATTCT-CAATCTAA
19526587 G
1 G
19526588 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCTCAATCTAA
Found at i:19527473 original size:26 final size:26
Alignment explanation
Indices: 19527437--19527489 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19527427 GTTGACTTAG
* *
19527437 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19527463 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19527489 G
1 G
19527490 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19528340 original size:26 final size:26
Alignment explanation
Indices: 19528310--19528362 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19528300 GTTGACTTAG
19528310 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19528336 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19528362 G
1 G
19528363 ATCGCACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19529634 original size:870 final size:864
Alignment explanation
Indices: 19526561--19530921 Score: 4691
Period size: 898 Copynumber: 4.9 Consensus size: 864
19526551 CTCAGTCTAA
* * * * * ** *
19526561 GCATACGGAATTCATTTCCAATCTAAGATTGGACCGGAGTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * *
19526626 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCTCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * *
19526691 ACCTAACCGACGGCATTGGGCTTCCAACGATCGTGGGGGCCGTGGGTGGTGTGCGCA-ATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCC-AGGG-GGTGTGCGCACATGATGT
19526755 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
19526820 TGC-CCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGTA
259 --CACCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
19526884 ATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTGGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
19526949 TTTGCATGCCAACAAAAATACAAGGATCACT-TCTACTAAGTTTGGGGCTAAAACTCCTTCCGAA
387 TGTGCATGCCAACAAAAATACAAGGATCA-TGTCTACCAAGTTTGGGACCAAAACTCCTTCCG-A
* * *
19527013 AAAATTTTAAAAATCCCAAACCCCAAAAAGTTTCAAAAAT--TGTGATAAATAGAAAACGAGTCG
450 AAAATTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG-GA-AAATAGAAAACGAGTCG
* *
19527076 TCTTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGT
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* ** *
19527141 GGCATTCGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC-ATCGATTCACGGCT
578 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
*
19527205 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCACCCGCCTGCTCGTTTCGTCGGT
643 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCG-------TCC-GCTCGTTTCGTCGGT
* * * * * *
19527270 TGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAAGGTTGTGGTAGCAG
700 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGATGGTTGCGGCAGCAG
* * * *
19527335 GATTGGCAGCACGCAGAGGGGGACCCGATCGATCCTCGACTTGCGCATCTCGCCCCTCTGGTCGA
765 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCC-CGACTTGCGCATCCCGCCCCTCTGGCCG-
* * * * *
19527400 CTGAGCCCCCGTACACTCGTTTCTTGGGTTGACTTAG
828 TTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAG
19527437 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATTGGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C----A---GA-C---C
* * * *
19527502 TGAGGGTTGCGGCAGTACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGG
41 -GAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* ** * * * * * *
19527567 CACCATCGTCGGGGCATCGTCAGAGAATC-GACCGACGGTATTGGGGTTTCGGTGATCGGAGAGG
105 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCGG-G-GG
*** * * * *
19527631 CCGGGTGGGGGGTGTGCGCACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATATAGGACCT
168 --GGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
19527696 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTG
231 CTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTG
* * * *
19527761 CTACTAGTAGCCATTAAAGTGT-TCGAAATGAGGACATTTTTTTCAAATGGTCACAAAATCTTGT
295 CTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* ** * *
19527825 ACACTTCGATTTTTTAGCTGAATTTTTTTTGTGCATAACAACAAGAATACAAGGATGATGTCTAC
359 ACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTAC
* ** *
19527890 CAAGTTTGATG-CCAAAACTTTTTCCGAAAAAATTTTAAAAAAT-CTGAACCGCAAAAAGTTTCA
423 CAAGTTTG-GGACCAAAACTCCTTCCG-AAAAA-TTTAAAAAATCCCGAACCGCAAAAAGTTTCA
* * *
19527953 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAACGCTTAAGGGACC
485 AAAATCATGGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
19528018 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAAC
550 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * * ** *
19528083 GCACCAACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTAGCCGGTGTAGTTCCCACC
615 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACC
* * * **
19528148 CGCTAGCCCGCCCGCTCGTTTCGTCGATTTGCTTAGGAATACAAAGTTCATTCCCAGTCTAAGAG
680 CG-T-------CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-
* ** * *
19528213 T-GGACCAGACTGATGGTTGCAACAGTAGGATCGGCAGCACGCAGAGGGGGACTCGACCGATCCC
736 TCGGACCAGACCGATGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCC
** * ** **** * ** * ***** *
19528277 --C--AAG-ATACACGCTCGTTTCATGG--GTTGA-CTTAGGCATACGGAGTTCATTCCCAGTC-
801 GACTTGCGCAT-CCCGC-C-CCTC-TGGCCGTTGAGCGCCCGCACACTCATTTCATGGGTTGACT
*
19528333 TAA
862 TAG
* * * *
19528336 GCATACGGAGTTCATTCCCAGTCTAAGATCGCACCGGACCGAGGGTTGCGGTACCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * * * *
19528401 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACTATTGCCAGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * *
19528466 ACCTGACCGACGGCATTAGGGTTCCAACGATC-GGGGGGCCA-GCGGTGTGCGCACATGATGTGT
131 ACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTG-
* ** *
19528529 CGAATGGCTGCTGGTACTTGGGCCGC-TATA-TGG-CCCCTAGTTTCTCATCAAACCTCAAGAAC
195 CG-ATGGGTGCTGGTACTT-GGCC-CTTATATTGGCCCCCTA-TCCCTCATCAAACCTCGAGAAC
* *
19528591 TCACCACCCCTTAAAGATCCAG-TTGAGATTTTGCAGGATTTGCTGCCAGTAGCCAATTAAAGGT
256 TCA-CACCCCTTAAAGA-GC-GTTTGAGATTTTACAGG-TTTGCTGCCAGTAGCC-ATTAAA-GT
*
19528655 GTCTGGAAATGGGGACACTTTTTTTCAAAT-GCCAC-AAATCTTAGTACACTTCGA-TTTTTAGC
315 GTCT-GAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTT-GTACACTTCGAGTTTTTAGC
*
19528717 TGAATTTTTTTGTGCATGCCCAA-AAAAATACAAGGATCATTTCTACCAAGTTTGCGGACCAAAA
377 TGAATTTTTTTGTGCATG-CCAACAAAAATACAAGGATCATGTCTACCAAGTTTG-GGACCAAAA
** *
19528781 CTCCTTCCGAAAAATTTAAAAAATCCCGAACCGCTAAAAAGTTTTGAAAATCATGGAAAATACAA
440 CTCCTTCCGAAAAATTTAAAAAATCCCGAACCGC-AAAAAGTTTCAAAAATCATGGAAAATA-GA
* *
19528846 AAACGAGTCGGTCTTAG-CAAGAAACTTCACGTGGAA-GCGTTAAGCGGACCGTTGTATGAATTT
503 AAACGAGTC-GTCTT-GCCATGAAACTTCACGT-GAAGGC-TTAAG-GGACCATTGTATGAATTT
19528909 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
563 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
** * * * *
19528974 TATCGATCCACAACTTGTGCATCCCGTCTCTCTGGCCTACATAGTGCCCACCCGTCCGCTCATTT
628 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGTCCGCTCGTTT
* * *
19529039 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GAACCGAGGGTTAC
693 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGATGGTTGC
* * * * *
19529103 GGCAGCAGTATCGGCAGCACGTAGAGTGGGACCC-AGTCAATCCCGACTTGCGCATCCCGCCCCT
757 GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCGACTTGCGCATCCCGCCCCT
* * *
19529167 CTGGCCAGTTGAGCGCCCGCACGCTAATTTCGTGGGTTGACTTAG
821 CTGGCC-GTTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAG
* * *
19529212 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGTGGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* ** * * *
19529277 CTCGGGCATGTGCTGGTGCCGCATTTTT-TTCCTCGGCACACCATCGCCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* ** * *
19529341 AGCTGACCGGTGGCATTGGGATTCCAGCGATCGGGGGGGCCAGGGGGTGTCCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
*
19529406 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTGACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
19529470 GCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTGAAATG
261 -CCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
19529535 GGGACACTTTTTTCAAATGTTCAAAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
19529600 GCATGCTAAAAAAAATACAAGGATCATGTCTACCAA-TTTTGGATCCAAAACTCCTTCCAAAAAA
390 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGA-CCAAAACTCCTTCC-GAAAA
* * * *
19529664 AGTTTAAAAAATCTCAAACAGCAAAAAGTTTCAAAAATCA-GGAAAAATAGAAAAGGAGTCGTCT
453 A-TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGG-AAAATAGAAAACGAGTCGTCT
19529728 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
19529793 ATTGGCACACAGAAATATGAAGATATGCCTAAACCGACCTACCACCCTATCGATCCACGGCTTGC
581 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
19529858 GCATCCCATCCCTTTGGTCGACGTAGTGACCGCCTGCCCGCCCGCTCGTTTCCTCGGTTGGCTTA
646 GCATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-ACCCGTCCGCTCGTTTCGTCGGTTGGCTTA
* * *
19529923 GGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACTGATGGTTGTGGCAGCAGGATCGGC
707 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGATGGTTGCGGCAGCAGGATCGGC
* * * * *
19529988 AGCATGCAGAGGTGGACCCGACCGATCCCCGACTTGCGCATCCCGCCTCTTTGGCCGGTTGAGAG
772 AGCACGCAGAGGGGGACCCGACCGAT-CCCGACTTGCGCATCCCGCCCCTCTGGCC-GTTGAGCG
* ** * *
19530053 CTCGCACGTTCGTTTCATGGGTTGACATAG
835 CCCGCACACTCATTTCATGGGTTGACTTAG
19530083 GCATACGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCTAGTCTAAGATCGAATCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---C----C--AGA-C----C-GA-
** * * *
19530148 CGACGGTTATGGTAGCACATGCTGGGCTCGGGCATGTGTTGGAGCCACATTTTTCTTCGTCGGGG
43 -G--GGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * * * * *
19530213 CACTATCGTCGGTGCATCACCAGAGAACCTGATCGATGGCGTTGGGGTTCCGGTGATCGGCGGGG
105 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGG
**
19530278 -TGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
170 CCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* ** *
19530342 CCCTCATCAAACCTCGAGAACTCACACCACCTTAATGAGAATTTGAGATTTTACAGGTTTACTGC
235 CCCTCATCAAACCTCGAGAACTCACACC-CCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGC
* * *
19530407 CAGTAGCCACTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGTTCACAAAATCTTGTACACT
299 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
19530472 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTATACCAAGTT
364 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTT
** * * * * *
19530537 TGGGTTCAAAAATCCTTCCAAAAAAATTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCT
429 TGGGACCAAAACTCCTTCC-GAAAAATTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* * * *
19530602 TGAAAAATAGAAAACTAGTCATCTTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTAT
492 TGGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
19530667 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTCAACCCACCTA
557 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
19530732 CCACCCTATCGATCCATGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGT
622 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCACCCGT
* *
19530797 CCACCCAGCCGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTC-
683 --------CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCG
*** * * * * * *
19530861 GATTGGACCGATGGTTG-GACAGCAGGATCGGTAGCACGCGGAAGGGGACCCGGCTGATCCC
739 GACCAGACCGATGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCC
19530922 CGGGATGCAC
Statistics
Matches: 2930, Mismatches: 396, Indels: 290
0.81 0.11 0.08
Matches are distributed among these distances:
866 115 0.04
867 9 0.00
868 56 0.02
869 71 0.02
870 334 0.11
871 138 0.05
872 47 0.02
873 160 0.05
874 136 0.05
875 131 0.04
876 154 0.05
877 32 0.01
878 128 0.04
879 1 0.00
880 1 0.00
881 1 0.00
883 1 0.00
885 2 0.00
887 4 0.00
888 2 0.00
890 1 0.00
892 2 0.00
893 2 0.00
895 1 0.00
896 1 0.00
897 106 0.04
898 457 0.16
899 37 0.01
900 15 0.01
901 30 0.01
902 88 0.03
903 16 0.01
904 186 0.06
905 241 0.08
906 217 0.07
907 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (864 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAATT
TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGGAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCCACCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCGGACCAGACCGATGGTTGCGGCAGCAGGATCGGCAGCACGCAG
AGGGGGACCCGACCGATCCCGACTTGCGCATCCCGCCCCTCTGGCCGTTGAGCGCCCGCACACTC
ATTTCATGGGTTGACTTAG
Found at i:19530117 original size:26 final size:26
Alignment explanation
Indices: 19530083--19530135 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19530073 GTTGACATAG
19530083 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19530109 GCATGCGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19530135 G
1 G
19530136 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19531768 original size:26 final size:26
Alignment explanation
Indices: 19531732--19531784 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19531722 GTTGAGTTAG
* *
19531732 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19531758 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19531784 G
1 G
19531785 ATCGGACCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19533306 original size:26 final size:26
Alignment explanation
Indices: 19533270--19533322 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19533260 ATTGACTTAG
19533270 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19533296 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19533322 G
1 G
19533323 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19533787 original size:902 final size:888
Alignment explanation
Indices: 19531907--19534293 Score: 3141
Period size: 902 Copynumber: 2.7 Consensus size: 888
19531897 GTTTTGGGCC
* * *
19531907 AAAACTACAAGGATCACCTCTACCAGGTTTTGGGCCAAAACTCCTTTTC-AAAAAATTTTAAAAA
1 AAAACTACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCC-TTTCAAAAAAATTTTAAAAA
19531971 ATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
65 ATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
** * * *
19532036 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCATGCA
130 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCATTGGCACGTA
* * * *
19532101 GAAATATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCACGACTTACGCATCCCGTCT
195 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCT
* * *
19532166 -TTCTGGCCAGCGTAGTGCCCGCCCGCTTGCTCG-TTCGTTTCGTCGGTTGGCTTAGGCATACGG
260 CTT-TGGCCAGCGTAGTGCCC-CCCGCCTGCCCGCTT-GTTTCGTCGGTTGGCTTAGGCATATGG
* * * * *
19532229 AGTTCATTCCCAGTCTAAGATTAGACCAGATCAAGGGTTGCG-GTAGTAT-G-CA--A--AG-GT
322 AGTTCATTCCCAGTCTAAGATCAGACC-GAACAAGGGTTGCGAGCAGGATCGACAGCACGAGAGG
** * * * * *
19532286 GGACCCGACCGATCTCCGACTTACGCATCCCGCCCCTATGGCCGGCTGAGCGCCCGTATGCTCGT
386 GGACCCGGTCGATC-CCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGT
* * * *
19532351 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGACTAAGCTTACAGAGTTCATTCCCAGT
450 TTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACCGAGTTCATTCCCAGT
** * * *
19532416 CTAAGCCCGGACCGGACCGAGGGTTGCGGTAGCATATGCTGGGCTTGGGCATGTGCTGGTGCCGC
515 CTAAGATCGGACC-GACCGAGGGTTGC-GCAGCACATGCTGGGC-TCGGCATGTGCTGGTGCCGC
* * ***
19532481 ATTTTTCTTCATCGGGGCACCATCACCGGAGCATCATCAGAGAACCTGACCGGCGACATTGGGGT
577 ATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCATCAGAGAACCTGACCGAAAACATTGGGGT
* *
19532546 TCCAGCGATCGAGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
642 TCCAGCGATCGAGGGGGTCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCA
*
19532611 TTATATTGGCCCCCTATCCCTCATCAAACGTAAAGAACTCACACCCCTTAAAGAGCATTTGAGAT
707 TTATATTGGCCCCCTATCCCTCATCAAACCTAAAGAACTCACACCCCTTAAAGAGCATTTGAGAT
*
19532676 TTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAATGGCGACACTTTTTTCAAATGCTCA
772 TTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGCGACACTTTTTTCAAATGCTCA
* * *
19532741 CAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
837 CAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTATGCATGCCAAA
* * *
19532793 AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCATTCCAAAAAAATTTTAAAAAA
1 AAAACTACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAA
* * * *
19532858 TCCCGAACCGCAAAAGGTTTCGAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACT
66 TCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
*
19532923 TCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCATTGGCACGTAG
131 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCATTGGCACGTAG
* *
19532988 AAATATGTAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGGCTTGCGCATCCCGTCTC
196 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTC
* * *
19533053 TTTGGCCGGCGTAGTGCTTGCCCACCCGCCTGCCCGCTTGTTTCGTCAGTTGGCTTAGGCATATA
261 TTTGGCCAGCGTA--G--TGCCC-CCCGCCTGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATATG
19533118 GAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCAGTAGCAGGATCGACAGCACGTA
321 GAGTTCATTCCCAGTCTAAGATCAGACCGAA-CAAGGGTTGC-G-AGCAGGATCGACAGCACG-A
* ** * * *
19533183 GATGGGGACCCGGTCGATGCCCGGCTTGCATATGCCGCCCCTCTGGTCGACTGAGCGCCTGCACG
382 GA-GGGGACCCGGTCGAT-CCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACG
*
19533248 CTCGTTTCGTGGATTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACCGAGTTCATTC
445 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACCGAGTTCATTC
* * *
19533313 CCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCAGCACAAGCTGGGCTCAGGCATGTGCTGGG
510 CCAGTCTAAGATCGGACC-GACCGAGGGTTGC-GCAGCACATGCTGGGCTC-GGCATGTGCTGGT
* * * * ** *
19533378 GCCACATTTTTCCTCGTTGGGGTACCATCACCAGAGCATTGTCGGAGAACCTGACCGAAAACATT
572 GCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCATCAGAGAACCTGACCGAAAACATT
* * * * *
19533443 AGGGTTTC-GACGATCG-GGGGGGCTGGGGGGTGTACGCACATGATGTGTGATGGGTGCTTGTAC
637 GGGGTTCCAG-CGATCGAGGGGGTC-GGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTAC
**
19533506 TTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCA
700 TTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTAAAGAACTCACACCCC-TTAAAGAGCA
*
19533571 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG-GAACACTTTTTTC
764 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGCG-ACACTTTTTTC
* *
19533635 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTATGCATGCCAAC
828 AAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTATGCATGCCAAA
* * * *
19533696 AGAACTACAAGGATCACGTCTACCATGTTTGGGGCTAAAACTCCTTTCAAAAAAATTTTAAAAAA
1 AAAACTACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAA
* * * *
19533761 -CTCGAATCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACT
66 TCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
* * * *
19533825 TCACGTGATGGCTTAAGGGACCATTGTGTGAATTTAAAAGCCATAAAAATCTCATTGGCACGTAG
131 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCATTGGCACGTAG
* * * * * *
19533890 AAATATAAAGATGTGCCTAAGCCCAGCTACCACCCTATCGATTCATAGCTTGCGCATCCCATCTC
196 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTC
* * * *
19533955 TCTGGCCAACGTAGTG-----C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGGATATGGAGTT
261 TTTGGCCAGCGTAGTGCCCCCCGCCTGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATATGGAGTT
* * *
19534013 CATTCCTAGTCTAAGATCGGACCAGAA-ATAGGGTTGTGGCAGCAGGATC-AGCAGCACGCAGAG
326 CATTCCCAGTCTAAGATCAGACC-GAACA-AGGGTTG-CG-AGCAGGATCGA-CAGCACG-AGAG
*
19534076 GAGGACCCGGTCGATCCTCGACTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTC
385 G-GGACCCGGTCGATCC-CGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC
* * * * *
19534141 ATTTCATGGGTTGACTTAGGCATATAGAGTTCACTCCCAGTCTAAGCATA-CGAAGTTCATTCCT
448 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACCG-AGTTCATTCCC
* * *
19534205 AGTCTACGATCGGACCGAACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGT
512 AGTCTAAGATCGGACCG-ACCGAGGGTTGCG-CAGCACATGCTGGGCTCG-GCATGTGCTGGTGC
*
19534270 CGCATTTTTCTTCGTCGGGCCACC
574 CGCATTTTTCTTCGTCGGGGCACC
19534294 GTCGTCACAA
Statistics
Matches: 1310, Mismatches: 155, Indels: 68
0.85 0.10 0.04
Matches are distributed among these distances:
885 3 0.00
886 243 0.19
887 2 0.00
888 1 0.00
889 13 0.01
890 338 0.26
891 8 0.01
892 1 0.00
893 5 0.00
894 1 0.00
895 2 0.00
897 1 0.00
898 2 0.00
900 3 0.00
901 8 0.01
902 494 0.38
903 185 0.14
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (888 bp):
AAAACTACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAA
TCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCATTGGCACGTAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTC
TTTGGCCAGCGTAGTGCCCCCCGCCTGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATATGGAGTT
CATTCCCAGTCTAAGATCAGACCGAACAAGGGTTGCGAGCAGGATCGACAGCACGAGAGGGGACC
CGGTCGATCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTG
GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGA
TCGGACCGACCGAGGGTTGCGCAGCACATGCTGGGCTCGGCATGTGCTGGTGCCGCATTTTTCTT
CGTCGGGGCACCATCACCAGAGCATCATCAGAGAACCTGACCGAAAACATTGGGGTTCCAGCGAT
CGAGGGGGTCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGG
CCCCCTATCCCTCATCAAACCTAAAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGCGACACTTTTTTCAAATGCTCACAAAATCTT
GTACACTTCGAGTTTTTAGATGAATTTTTTTATGCATGCCAAA
Found at i:19536827 original size:919 final size:898
Alignment explanation
Indices: 19534831--19539194 Score: 5171
Period size: 919 Copynumber: 4.9 Consensus size: 898
19534821 GTTGACTTAG
* * ** ** * * *
19534831 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTAAGGGTTGCGACAGTACATGCAGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
19534896 CTCGAGCATGTGCTGGTGCCGTATTTTCCTTCG-CAGGGGCACCATCGT--CGGAAAACCTGACC
66 CTCGGGCATGTGCTGGTGGCGCATTTTTCTTCGTC-GGGGCACCATTGTCACGGAGAACCTGACC
* * *
19534958 -GA-CG--G-CATTAGGGTTTCGACGATCGAGGGGGCTGGGGGGTGTGTGCACATGATGTGCGAT
130 GGACCGACGACATTAGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * * *
19535018 GGGTACGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAACC
194 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
19535083 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
259 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGG
* * *
19535148 ACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTGGCTGAATTTTTTTGTGCA
324 ACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTTGAGTTTTTAGCTGAATTTTTTTATGCA
* * *
19535213 TGCCAACAAAAATACAAGGATCATGTCTGCCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
389 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
** * *
19535278 TAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCA
454 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * **
19535343 TTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGTGTTGG
519 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * ** * * *
19535408 CACGTAGAAATATAAAGATGTGAGTAAACCCACCTACCATCCTATCGATCCACGGCTTACGCATC
584 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATC
** * * * * * *
19535473 CCGTCTCTCTGGTTGACGTAGTGCCCACCCACCCGCCCACCCGTTCGTTTCGTCGTTTGGCTTAC
649 CCGTCTCTCTGGCCGACGTAGTACCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * *
19535538 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGAACGAGGGTTG-TGGTAGTAAGATTGAC
714 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCT-GCAGCAGGATCGAC
* ** * *
19535602 AGCACACAGAGAGGGACCCGGTCGAT-CTCCGACTTACGCATCCCACCCCTCTGGCCGGTTGAGC
778 AGCACACAGAGGGGGACCCGACCGATCCT-CGACATACGCATCCCACCCCTCTGGCCGGCTGAGC
* * * *
19535666 GCCTGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
842 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACACAATTCATTCCCAGTCTAA
* * * * *
19535723 GCATATGGAGTTCATTCCCAGTCTAAGATCAGA-TAGGATCGAGGGTTGCAGCAACACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTGCGGCAGCACATGCTGG
* * *
19535787 GGTCGAGCATGTGCTGGTGGCGCATTTCTCTTCGTCGGGGCACC-TTCGTCGGAGCATCGTCGGA
65 GCTCGGGCATGTGCTGGTGGCGCATTTTTCTTCGTCGGGGCACCATT-GT-----CA----CGGA
* * *
19535851 GAACCTGACCGGATGTGTTGGGGTACCGACAACATTGGGGTTCTGACGATCGGGGGGCCGGGGGG
120 GAACCTGACC-----------GG-ACCGACGACATTAGGGTTCCGACGATCGGGGGGCCGGGGGG
* *
19535916 TATGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
173 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
19535981 AAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAATAGCC
238 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCC
* * **
19536046 ATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTACTATACTTTGAGTTT
303 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTTGAGTTT
*
19536111 TTAGCTGAATTTTTTTCTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
368 TTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * **
19536176 AAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAATCAAAAAAAGTTTCAAAAATCATGAAAAAT
433 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
* * *
19536241 AGAAAACGAGTCGTCTTGCCAGGAAACTTCACGTGAAGTCTTAATGGACCATTGTATGAATTTAC
498 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
** * * * *
19536306 AAATCATAAAATTGGCATTGGCATGTAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTA
563 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
19536371 TCGATCCATGGCTTGCGCATCCCATGTCTCTGGCCGACGTAGTACCCGCCCGCTCGCCCACCCGC
628 TCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCGCCCGCCCACCCGC
* ** * * *
19536436 TCGTTTCATCTATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGG
693 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* ** *
19536501 GTTGCTGCAGCAGGATCGATAGCACACAGAGCTGGACCCGACCGATCCTCGACTTACGCATCCCA
758 GTTGCTGCAGCAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCTCGACATACGCATCCCA
* * * * * *
19536566 CCCCTCTGGCCGACTGAGCACCGGCACGCTCGTTTCGTGGGTTGACTTAAGCATATACAATTCAT
823 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACACAATTCAT
*
19536631 TCCCAATCTAA
888 TCCCAGTCTAA
* *
19536642 GC-TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
19536706 CTCGGGCATGTGTTGGTGGCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGGCGCATTTTTCTTCGTCGGGGCACCAT--T----G--TCA-CGGAGA
*
19536771 ACCTGACCGGATGCATTGAGGTACCGACGACATTAGGGTTCCGACAATCGGGGGGGCCGGGGGGT
122 ACCTGA-C-----C-----GG-ACCGACGACATTAGGGTTCCGACGATC-GGGGGGCCGGGGGGT
19536836 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
174 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
19536901 AACCTTGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCA
239 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCA
* * *
19536966 TTAAAGTGTCTGAAATGGGGACA-GTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
304 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTTGAGTTTT
*
19537030 TAGCTGAATGTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCT--GGCCA
369 TAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT-TGGGGCCA
* * *
19537093 AAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
433 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
*
19537158 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG-TGTAAGGGACAATTGTATGAATTTA
498 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT-TAAGGGACCATTGTATGAATTTA
*
19537222 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
562 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * * * ** * *
19537287 ATCAATCCATGGCTTACACATCCCTTCTCTCTGGCTGGCGTAGTGCCCGCCCGATCACCCATCCG
627 ATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCGCCCGCCCACCCG
* *
19537352 CTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAG
692 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
** * ** * * ** *
19537416 GGTTGAGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGA-ATGCGTGTCT
757 GGTTGCTGCAGCAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCTC-GACATACGCATCC
* * ** * * *
19537480 CGCCCTTCTGGATGGCTGAGCGCCCGCACGCTCTTTTTGTGGGTTGACTTAGGCATACGA-AGTT
821 CACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC-ACAATT
*
19537544 CATTCCTAGTCTAA
885 CATTCCCAGTCTAA
* * * * * *
19537558 GCATGCGGAGTTCATTCTCAGTCTAAGATCAGACCGGATCGAGGCTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
19537623 CTCGGGCATGTGTTGGTATCGC-TGTTTTCCTCGTCAGGGCACCATTGT--CGGAGAACCTGACC
66 CTCGGGCATGTGCTGGTGGCGCAT-TTTTCTTCGTCGGGGCACCATTGTCACGGAGAACCTGACC
* * *
19537685 -G---G-CGACATT-GAGGTTCCGATGATCAGGGGGGCCGGAGGGGAGTGTGCACATGATGTGCG
130 GGACCGACGACATTAG-GGTTCCGACGATC-GGGGGGCCGG-GGGGTGTGCGCACATGATGTGCG
* *
19537744 ATGGGTGCTGGTACTTTGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
192 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
19537809 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAATGTGTCTGAAATGG
257 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGG
* * **
19537874 GGACACTTTTTTCAAGTGGTCACAAAATCTTGT-TCACTTTGAGTTTTTACCAAAATTTTTTTAT
322 GGACACTTTTTTCAAATGGTCACAAAATCTTGTAT-ACTTTGAGTTTTTAGCTGAATTTTTTTAT
* *
19537938 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCTTG-TAA
386 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC--GAAAA
19538002 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
449 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* **
19538067 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGAAATAAAAATGGC
514 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
19538132 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGC
579 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* * * ** * *
19538197 GCATCTCGTCTCTCTGGTCGGCGTAGTACCTACCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGG
644 GCATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGG
* * * * * * *
19538262 CTTAGGCATAGGGAGTTCATTCCTAGTCTAAGATTGGACTGGACTGA-GGTTGC-GATAGTAGGA
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCTG-CAGCAGGA
* * ** * * * * * *
19538325 TCGGCAGAATGCAG-GGGGGACCCAACCGATACTCGGCATACGCATCCCGCCCCTCTTGTCGGCT
773 TCGACAGCACACAGAGGGGGACCCGACCGATCCTCGACATACGCATCCCACCCCTCTGGCCGGCT
* * ** * ***
19538389 GAGCGCCCGCACGTTTATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTTTAGTCTAA
838 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACACAATTCATTCCCAGTCTAA
* * ** * *
19538450 GCATATGGAGTTCATTCCCAATCTAAGATTGGACCAGACCGAGTGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
19538515 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTG-CGGGGCACCATTGTCA--GAGAACCTGACCG
66 CTCGGGCATGTGCTGGTGGCGCATTTTTCTTCGTCGGGGCACCATTGTCACGGAGAACCTGACCG
* * * * * * *
19538577 G--CG--G-CATTGGGGTTTCGACAAT-AGGGGGCTGGGGGGGTGTGCGCACTTGATGTGAGATG
131 GACCGACGACATTAGGGTTCCGACGATCGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATG
* * *
19538636 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAGCCTTGAGAACTCACACCCC
195 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
19538701 CTTAAAGAGCAATTGAGATTTTATC-GGCTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGG
260 CTTAAAGAGCATTTGAGATTTTA-CAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGG
* * * ** *
19538765 ACACTTTTTTCAAATGGTCA-TAAATCTTGTACACTTTGACTTTTTAGCTG-ATTCTTTTCGTGT
324 ACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTTGAGTTTTTAGCTGAATT-TTTTTATGC
* * *
19538828 ATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAGT--TT----TAAAATT
388 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * *
19538886 TTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAA-CTGTGAAAAGTAGAAAACGAGTCTTCTTGC
453 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC-ATGAAAAATAGAAAACGAGTCGTCTTGC
* *
19538950 CATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCATT
517 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
19539015 GGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCTATGGCTTGCGCA
582 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
* *
19539080 TCCCGTCTCTCTGGCCGACGTAGT----GCCCACCCG----CCCGCTCGTTTTGTCGGTTGGCTT
647 TCCCGTCTCTCTGGCCGACGTAGTACCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTT
* * * *
19539137 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGATGCGGCAGCA
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCTGCAGCA
19539195 CATGCGGCAG
Statistics
Matches: 3015, Mismatches: 376, Indels: 181
0.84 0.11 0.05
Matches are distributed among these distances:
872 63 0.02
873 8 0.00
874 1 0.00
876 7 0.00
879 1 0.00
880 206 0.07
885 2 0.00
887 7 0.00
888 73 0.02
889 192 0.06
890 154 0.05
891 129 0.04
892 277 0.09
893 276 0.09
894 24 0.01
900 1 0.00
903 13 0.00
905 1 0.00
906 12 0.00
909 1 0.00
911 1 0.00
915 2 0.00
916 138 0.05
917 363 0.12
918 220 0.07
919 817 0.27
920 20 0.01
921 3 0.00
924 2 0.00
926 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGGCGCATTTTTCTTCGTCGGGGCACCATTGTCACGGAGAACCTGACCG
GACCGACGACATTAGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTATACTTTGAGTTTTTAGCTGAATTTTTTTATGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCC
GTCTCTCTGGCCGACGTAGTACCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCTGCAGCAGGATCGACAGC
ACACAGAGGGGGACCCGACCGATCCTCGACATACGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGACTTAGGCATACACAATTCATTCCCAGTCTAA
Found at i:19539201 original size:12 final size:12
Alignment explanation
Indices: 19539184--19539221 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
19539174 GGACTGAGGG
19539184 ATGCGGCAGCAC
1 ATGCGGCAGCAC
19539196 ATGCGGCAGCAC
1 ATGCGGCAGCAC
*
19539208 ATCCGGCAGCAC
1 ATGCGGCAGCAC
19539220 AT
1 AT
19539222 CCCTTTTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.26, C:0.34, G:0.29, T:0.11
Consensus pattern (12 bp):
ATGCGGCAGCAC
Found at i:19539872 original size:26 final size:26
Alignment explanation
Indices: 19539836--19539888 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19539826 GTTGACTTAG
19539836 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19539862 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19539888 G
1 G
19539889 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19541269 original size:26 final size:26
Alignment explanation
Indices: 19541239--19541290 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
19541229 GTTGACTTAG
19541239 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19541265 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19541291 TATCAGACCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19541375 original size:706 final size:711
Alignment explanation
Indices: 19539748--19541845 Score: 2521
Period size: 706 Copynumber: 3.0 Consensus size: 711
19539738 GGCAGCACAC
* * * * *
19539748 AGAGGAGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCTTCTGGTCAGTTGAGCACCCGCAC
1 AGAGGAGGACCCGATCGATCCACGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCAC
* *
19539813 GCTCATTTCGTAAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
66 GCTCGTTTC-TAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
* * * *
19539878 CCCTGTCTAAGATCGAACC-AGACCAAGGGTTACAGCAGCACATACTGGGCTCGGGCATGTGCTG
130 CCCAGTCTAAGATCG-ACCGA-ACCAAGGGTTGCAACAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * *
19539942 GGGCAGTATTTTTCTTCGTC-GG-AGCATCGTC-GAGAA-C-G---GCGACATTGGGGTTCCGAC
193 GTGCCGTATTTTTCTTCGCCGGGCACCATCGCCGGAGAACCTGACCGCGACATTGGGGTTTCGAC
** *
19539999 GATCGGGGGGGCCGTGGGGGTAAGTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATA
258 GATCGGGGGGGCCG-GGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * * *
19540064 TTGGCCCCCTATCCCTCATAAAACCTTGAGAACTCTC-ACCCATTTAAAGAGCATTTGAGATTTT
322 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCC-CTTAAAGAGCATTTGAGATTTT
* * *
19540128 ACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATCGGGACAC-TTCTTTCAAATGGTAACA
386 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTC-TTCAAATGGTCACA
* *
19540192 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-GAAAAAAAATGCAAGGATC
450 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
* * * *
19540256 ACGTCTACTACGTTTGGGGCC-AAAA-CACTTTCCGAAAAAATTTAAAAAAATCCCGAACCGTAA
515 ACGTCTACCAAGTTTGGGGCCAAAAATCA-TTT-CGAAAAAGTTTTAAAAAATCCCGAACCGTAA
** * *
19540319 AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGAT
578 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * *
19540384 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATG
643 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GCAGTAGCACG-AG-AATACGAACATG
*
19540449 TGCCTAA
705 TGACTAA
* ** ** * * * * *
19540456 ACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGTCGGC-GTAGTGCCC
1 A--GA-GGAGGACCCGATCGATCCACGGCTTGCGCATCCCGCCCCTCTGGTCGGCTG-AGCGCCC
* * * * ** * * * * * *
19540520 GCCCGCCCGCCTGCCCGCTCG--TT--TCGT-C-G-GTTGA----C--T-TAGGCATATGGAGTT
62 GCACGCTCG-TTTCTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
* * * * * *
19540571 CATTCCCAGTCTAAGATCGGACCGGACTAAGGGTTGCGACAGTACATGCAGGGCTCGAGCATGTG
126 CATTCCCAGTCTAAGATC-GACCGAACCAAGGGTTGCAACAGCACATGCTGGGCTCGGGCATGTG
* * *
19540636 CTGGTGTCGTATTTTTCTTTGCCGGGTCACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTT
190 CTGGTGCCGTATTTTTCTTCGCCGGG-CACCATCGCCGGAGAACCTGACCG-CGACATTGGGGTT
* * *
19540701 TCGACGATCGAGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTACGGGTACTTGGCCCT
253 TCGACGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
*
19540766 TATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGAT
318 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGAT
19540831 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTCAAATGGTCA
383 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTCAAATGGTCA
* * * **
19540896 CAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTATGCATGCCAACAAATTTACAAGGA
448 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
* *
19540961 TCACGCCTACCAAGTTTGGGGCCAAAAATCATTTCGAAAAAGTTTTAAAAAATCCCAAACCG-AA
513 TCACGTCTACCAAGTTTGGGGCCAAAAATCATTTCGAAAAAGTTTTAAAAAATCCCGAACCGTAA
* *
19541025 AAAGTTTCAAAAATCATGAAATATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCT
578 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * *
19541090 TAAGGAACCATTGAATGAATTTACAAGTCATAAAAATGCAGTAGCA-G-G-AT-CG-ACA-G-GA
643 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCAGTAGCACGAGAATACGAACATGTGA
*
19541148 C-GA
708 CTAA
* * * * * *
19541151 AGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGTCCGTAC
1 AGAGGAGGACCCGATCGATCCACGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCAC
* *
19541216 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
66 GCTCGTTTC-TAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
* * * *
19541281 CCCAGTCTAATATCAGACCGAACCGAGGGTTGCAACAGCACATGCTGGGCTTGGGCATTTGCTGG
130 CCCAGTCTAAGATC-GACCGAACCAAGGGTTGCAACAGCACATGCTGGGCTCGGGCATGTGCTGG
*
19541346 TGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGACAT
194 TGCCGTATTTTTCTTCGCC-GGGCACCAT---C---G---C--CGGAGAACCTGACC-GCGACAT
* *
19541411 TGGGG-TTCTG-CTGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
246 TGGGGTTTC-GAC-GATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTA
* * * *
19541474 CTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGACAACTCACACCCCCTTAAAGAGC
309 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGC
* * * *
19541539 ATTTGGGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
374 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTC
* *
19541604 AAATGGTCACAAAATCTTGTACACTTCAACTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
439 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* * *
19541669 ATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAAAGTTTTAAAAAATCCC
504 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCATTTCGAAAAAGTTTTAAAAAATCCC
*
19541734 GAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
569 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
19541799 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
634 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
19541846 GCATTTGCAT
Statistics
Matches: 1170, Mismatches: 166, Indels: 98
0.82 0.12 0.07
Matches are distributed among these distances:
691 2 0.00
692 51 0.04
693 2 0.00
694 2 0.00
695 2 0.00
696 4 0.00
697 86 0.07
698 7 0.01
699 5 0.00
700 10 0.01
701 5 0.00
702 2 0.00
703 2 0.00
704 5 0.00
705 9 0.01
706 389 0.33
707 98 0.08
708 8 0.01
709 5 0.00
710 2 0.00
711 50 0.04
712 3 0.00
715 1 0.00
716 4 0.00
717 316 0.27
718 100 0.09
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (711 bp):
AGAGGAGGACCCGATCGATCCACGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCAC
GCTCGTTTCTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTC
CCAGTCTAAGATCGACCGAACCAAGGGTTGCAACAGCACATGCTGGGCTCGGGCATGTGCTGGTG
CCGTATTTTTCTTCGCCGGGCACCATCGCCGGAGAACCTGACCGCGACATTGGGGTTTCGACGAT
CGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
CCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTCAAATGGTCACAAAATCT
TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGGCCAAAAATCATTTCGAAAAAGTTTTAAAAAATCCCGAACCGTAAAAAGTTTC
AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGCAGTAGCACGAGAATACGAACATGTGACTAA
Found at i:19544803 original size:26 final size:26
Alignment explanation
Indices: 19544773--19544825 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19544763 GCTGACTTAG
19544773 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19544799 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19544825 G
1 G
19544826 ATCATACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19545687 original size:26 final size:26
Alignment explanation
Indices: 19545658--19545710 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19545648 GTTAACTTTG
*
19545658 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
19545684 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
19545710 G
1 G
19545711 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:19546586 original size:26 final size:26
Alignment explanation
Indices: 19546556--19546608 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19546546 GTTGACTTAG
19546556 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19546582 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19546608 G
1 G
19546609 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19547468 original size:26 final size:26
Alignment explanation
Indices: 19547439--19547491 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19547429 GTTGACTTAG
*
19547439 GCATACAGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATTCCAAGTATAA
* *
19547465 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTATAA
19547491 G
1 G
19547492 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTATAA
Found at i:19548391 original size:25 final size:25
Alignment explanation
Indices: 19548344--19548391 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
19548334 GTTGACTTAG
*
19548344 GCATACGGAGTTCATTTCAAGTCAA
1 GCATACGGAGTTCATCTCAAGTCAA
*
19548369 GCATATGGAGTTCA-CTCACAGTC
1 GCATACGGAGTTCATCTCA-AGTC
19548392 TAAGATCAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 3 0.15
25 17 0.85
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATCTCAAGTCAA
Found at i:19548697 original size:903 final size:898
Alignment explanation
Indices: 19543897--19549548 Score: 7230
Period size: 903 Copynumber: 6.3 Consensus size: 898
19543887 GCTGACTTAG
* * **
19543897 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCATCACATATTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * *
19543962 CTCAGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGAGCACCATCATCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCG-CCGAGA
* * * * * *
19544027 ACCTGACCGATGGCATTGGGGTTTCGACGATCGGGGGGGCC-GGGGGGTGTGCGCTCATGATATA
130 ACCTGACCGACGACATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
19544091 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA-TCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19544155 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
19544220 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGTTGAATTATTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** * *
19544285 TGCATGCCAACAAAAATACAAGGATCCCGTCCACCATTTTTGGGGCAAAAAATAGC-TCCGAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAA-ACCTTCCGAAAA
* * * * *
19544349 AATTTAAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGCCGTCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
19544414 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAAATGG
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC-ATAAAAATGG
* *
19544479 CATTGGCACACAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
19544544 TGCATCTCGTCTCCCTGGCTGGCGTAGTGCCCGCCCGCCCGCCGGCCCGCTCATTTCGTCAGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-CCCGCC--CCCGCTCGTTTCGTCGGTTG
* * * * *
19544609 GCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGATCAGACCGAGGGTCACGGCAGCAGGA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGATTACGACAGCAGGA
* * * * * *
19544674 T-GGCAGCAGGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCACCGCTCTGGGCGGCT
773 TCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACT
* ** * * *
19544738 AAGCGCCCTTACGCTCGTTTCATGGGCTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
838 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19544799 GCATACGGAGTTCATTCCCAGTCTAAGATCATACCGGACCGAGGTTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
19544864 CTCGGGCATGTGCTGTTGCGGCATTTCTCTTCACCGGGGCACCATCGTC-G-G--T------GAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGAGAA
* * *
19544919 CCTGACCGACCG-TATTGGGGTTTCGGCGATCGGGGTGGCCGGGGGGGTGTGCACACATGATGTG
131 CCTGACCGA-CGACATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
19544983 CGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCGCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19545048 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19545113 GGGGACACATTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19545178 TGCATGCCAA-AAGAAATACAGGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAA
390 TGCATGCCAACAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA-CCTTCCGAAAA
* *
19545242 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
19545307 TGCCATGAAACTTCACGTGAAGGCTTAGGGGACGATTGTATGAATTTAAAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * ** *
19545372 ATTGGCATGCAGAAATATGAAGATGTACCTAAAATCACCTACCATCCTATCGATCCACGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
19545437 GCATCCCGTCTCTCTGGTCGGCGTAGTG-CC-CACCCG--CCCGCTTGTTTCGTCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCGCCCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * ** *
19545498 GGCATACGGAGTTCATTCCCAGTATAAGATCGTA-CTGGACCGAGGGTTATGGTAGCAGGATTGG
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGGATTACGACAGCAGGATCGG
* * * **
19545562 CAGCACGTAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGC
777 CAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGC
* * * * *
19545627 GCCCGCATGCTCATTCCGTGGGTTAACTTTGGCATACGGAGTTCATTCCCAGTCTAA
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * ** *
19545684 GCATACGGAGTTCATTCCAAGTCTAAGATTGGATCGGACCGAGGGTCGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
19545749 GTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCC-GAGA
* ** * * * *
19545814 ACGTGACCGGTGGCATTGGGGTTTCGACGATCGGGGGGGCC-GAGGGGTGTGTGCACATGATGTG
130 ACCTGACCGACGACATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
19545878 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCGCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19545943 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
19546008 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTTGAATTTTTAGTTGACTTTTTTT-
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19546072 TGCATGCCAACAAAAATGCAAGGATCACGTCTAACAAGTTTGGGGCCAAAATTA-CTTTCGAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA--ACCTTCCGAAAA
** **
19546136 AATTTTAAAAAATCCCGAACAACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
19546201 TGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
19546266 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
19546331 GCATCCCATCTCTCTCGTCGGCGTAGTGCCCGCCCTCC-CGCCCACTCGTTTCGTCGGTTGGCTT
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CCGCCCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * * *
19546395 AGGGATACGTAGTTCATTCCCATTCTAAGATTGGACCAAACTGA-GAGTTGCGACAGCAGGATCG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGA-TTACGACAGCAGGATCG
* * * * *
19546459 GCAGCATGTAAAGGAGGACCCGACCGATCCCCGGCTTGTGCATCCCACCCCTCTGG-CAAGCTGA
776 GCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGA-CTGA
* *
19546523 GCGCCCGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * *
19546582 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGTACATGTTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
** * *
19546647 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGGTGGGGCACCATCGTCGGAG-A--ACC--TAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGAGAA
* * *
19546707 CC--A--G-CGGCATT-GGGTTTCCGGTGATTGGGGGGGCCGAAGGGGGTGTGTGCGCACATGAT
131 CCTGACCGACGACATTGGGGTTT-CGGCGATCGGGGGGGCCG--GGGGG-GTGTGCGCACATGAT
* * * *
19546766 GTGAGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCGCTCACCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
19546831 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGG
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-G
* * *
19546896 AAA-GGGGACACTTTTTTCAAAAGATCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * *
19546960 TTT-TGCATGCCAACAAAAATACTAGGATTACATCTACAAAGTTTGGAGCC-AAAACTTATTCCG
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAC--CTTCCG
* * * * *
19547023 AAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAAGTC
449 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
19547088 GTCTTGCCACGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * * * * * *
19547153 TAGTATTGGCACACTGAAATATGAAGAGGAGCCTAAATCCACCTACCACACTATCGATCCACAGC
579 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* **
19547218 TTGCGCATCCCGTCTCTCTGGCCAGCGTAGT----G--CCCG--CCCGCTCGTTTCGTCAATTTG
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCGCCCCCGCTCGTTTCGTC-GGTTG
* * * * *
19547275 G-TTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGATCGGACTGA-GAGTTACGACAGCAAG
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGA-TTACGACAGCAGG
** * * * * * * * *
19547338 ATCGATAGAATGTAGAGGGGGACCAGGCCGATCCCCGGCTAGCCCATCCCACCCCTTTGG-CAAG
772 ATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGA-
* * *
19547402 CTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTATAA
836 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
19547465 GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAATACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * *
19547530 CTCAGGCATGAGATGGTGCCGCATTTTTCTTCGGCGGGGCACCATTGCCGGAGCATCGCCTGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCC-GAGA
* * * *
19547595 ACCTGACAGGCGACATTGGGGTTTCGGCGATCGGGGGGGCTGAAGGGGGGTGTGCACACATGATG
130 ACCTGACCGACGACATTGGGGTTTCGGCGATCGGGGGGGCCG--GGGGGGTGTGCGCACATGATG
* * * *
19547660 TGTGATGGGTCCTGGTACTT-GCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
19547724 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
19547789 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
19547854 TGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ACCTTCCGAAA
*
19547919 AAATTTTAAAAAATCCCGAGCCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
19547984 TTGTCATGAAACTTGACATGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
19548049 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** **
19548114 CGCATCCCGTCTCTCTGGTTGTTGTAGTGCCCGCCCGTCCGCCCTACCGCTCGTTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC--CCGCCC--CCGCTCGTTTCGTCGGTTG
* * * *
19548179 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGATCAAGGATTACGACAACAGGA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGATTACGACAGCAGGA
* * * * * ** *
19548244 TCGACAGCACGTAGAAGGGGACCCGATCGATCCCTGGCTTGTGCATCCTGCCCCTCTGGCCGATT
773 TCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACT
* * * * *
19548309 GTA-TGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCAAGTC-AA
838 G-AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
19548369 GCATATGGAGTTCACTCACAGTCTAAGATCAGATCGAACCGAGGGTTGCGGCAGCACGTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
19548434 CTCGGGCATGTGCCGGTGCTGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCG-AGA
* *
19548499 ACCTGACCGACGACATTGGGATTTCGGGGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGACATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
19548564 CGATGGGTGCTGGCACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19548629 ACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
19548694 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAACTGAATTGTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * **
19548759 TGCATACCAACAAAAATACAAGGATCATGTCTGCCAAGTTTGGGGCCAAAAATCCTTCTAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA-CCTTCCGAAAAA
* * ** * *
19548824 AGTTTAAAAAATCCCGAAGCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
19548889 GCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCTTAAAAATTTG-
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGGC
* * ** *
19548953 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTAATCCACGACTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
19549018 GCATCCCGTCCCTCTGGCCGGGGTAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTTGGTCGGTTAG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-C-CG-CC-CCCGCTCGTTTCGTCGGTTGG
** * * * ** *
19549083 CTTACTCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGATTGCGGTAGTAGGAT
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGATTACGACAGCAGGAT
* * * * * *
19549148 CGGTAGCACGCAGAGGGGGACCC-AGCCAATCCCCGACTTACGCATCCCGCCCCTCTGGCCGACT
774 CGGCAGCACGTAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACT
* * * * *
19549212 GAGCACCCGAACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
838 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
19549273 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGTAGGACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * ***
19549338 CTTGGGCATGTGCTGGTGCCTCATTTTTCTT--TCGAGGCACCATTACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCC-GAGA
* ** * *
19549401 ACCTGACCGGC-AGCATTGGGGTTTCGATGATTGGGGGGGCTTGGGGGGGTGTGCGCACATGATG
130 ACCTGACCGACGA-CATTGGGGTTTCGGCGATCGGGGGGGC-CGGGGGGGTGTGCGCACATGATG
* *
19549465 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
19549530 ACACCCCCTTAAAAAGCAT
258 ACACCCCCTTAAAGAGCAT
19549549 ACGAGTCGTC
Statistics
Matches: 4131, Mismatches: 532, Indels: 173
0.85 0.11 0.04
Matches are distributed among these distances:
883 284 0.07
884 80 0.02
885 201 0.05
886 9 0.00
887 22 0.01
888 6 0.00
889 6 0.00
890 8 0.00
891 484 0.12
892 345 0.08
893 556 0.13
894 288 0.07
895 217 0.05
896 38 0.01
897 6 0.00
898 273 0.07
899 2 0.00
900 1 0.00
901 5 0.00
902 195 0.05
903 703 0.17
904 237 0.06
905 160 0.04
906 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGAGAA
CCTGACCGACGACATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCGCCCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGATTACGACAGCAGGATCGGCAGC
ACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19549062 original size:12 final size:12
Alignment explanation
Indices: 19549045--19549069 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
19549035 CCGGGGTAGT
19549045 GCCCGCCCGCTC
1 GCCCGCCCGCTC
19549057 GCCCGCCCGCTC
1 GCCCGCCCGCTC
19549069 G
1 G
19549070 TTTGGTCGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.64, G:0.28, T:0.08
Consensus pattern (12 bp):
GCCCGCCCGCTC
Found at i:19549284 original size:26 final size:26
Alignment explanation
Indices: 19549247--19549299 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19549237 GTTGACTTAG
* *
19549247 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19549273 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19549299 G
1 G
19549300 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19549944 original size:26 final size:26
Alignment explanation
Indices: 19549914--19549966 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19549904 GTTGACTTAG
19549914 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
*
19549940 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
19549966 G
1 G
19549967 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:19552566 original size:902 final size:899
Alignment explanation
Indices: 19549549--19553510 Score: 4783
Period size: 903 Copynumber: 4.4 Consensus size: 899
19549539 TAAAAAGCAT
* * **
19549549 ACGAGTCGTCTTGCCATGAAATTTGACGTGAAGGCTTAAGGGACTGTTGTATGAATTTACAAGCC
1 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
19549614 ATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGAT
66 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * * * *
19549679 CCATGGCTTACGAATCCCGTCTCTCTGGCCGACGTAATGCCCGCCCG--C-CCGT-TCGCTCTTT
131 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCTCCCGCTCGTT
* * * * *
19549740 TCGTCAGTTGGCTTAGGCATATGGATTTC-TTTCCAGTCTAAGATCAGACCAGACTGAGGGTTAC
196 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGC
** * * ** **
19549804 GGTAGTAGGATC-GACAGCACGCAGAGAAGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCC
260 GACAGAAGGATCAG-CAACACGCAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCC
* * * * * * * * *
19549868 TCTGGCTGGCTGAGCAGCCC-CACGCTCATTTCATGTGTTGACTTAGGCATAAGGAGTTCATTCC
324 TCTGGCCGGCTGTGGA-CCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCC
* * ** * **
19549932 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCAAGGGTTGCGCCAGCAC
388 CAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAC
* * * *
19549997 ATGCTGGGCTCGAGCATGTGCTAGTGCCACATTTTTCTTCGTCGGGG------CA-C----CATC
453 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATC
* * * * * *
19550051 GTCGGAGAACCTGACCGACGACATTTTGGTTCCGGCGATAGGAGGGGCCGGGGAGGTGTGCGCAC
518 GTCGGAGAACCTGACAG-CGGCA-TTGGGTTCCGACGATCGGGGGGGCCGGGG-GGTGTGCGCAC
* * * *
19550116 ATGATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAA
580 ATGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
19550181 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTG
645 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAATAGCCATTAAAGTG
* * * * * *
19550246 TCTAAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTTGAATTTTTAGCTGAC
710 TCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * ** * *
19550311 TTTTTTTGTGCATGCCAAAAAAAATGCAAGGATCACGTCTAACAAGTTTGGGGCCAAAATTACTT
775 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GTTCCAAAACTCCTT
*** * *
19550376 CCGAAAAAATTTTAAAAAATCCCGAACAACAAAAAGTTTTGAAAATCATGAAAAATAGAAA
839 CCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAA
*
19550437 ACGAGTCGTCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
1 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
**
19550502 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACAAACCACCCTATCGAT
66 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * *
19550567 CCACGGCTTTCGCATCCCGTCTCTCTGGTCGGCGTAGT----GCCCGCCCACCCGCCCGCTCGTT
131 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCTCCCGCTCGTT
* * * **
19550628 TCATCGGTTGGCTTGGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGACTTGC
196 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGC
* * * **
19550693 AGA-AGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATTCCC-GGCTTGCGCATCCCGCCC
260 -GACAGAAGGATCAGCAACACGCAGAGGGGGACCCGGCCGA-TCCCTGGCTTGCGCATCCCGCCC
* * * * * *
19550756 CTTTGGCCGGTTGAGCG-CCTGCACG-TCCATTTCGTGGGTT--C--A--C-T-T--AG------
323 CTCTGGCCGGCTGTG-GACCCGAACGCT-CGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATT
* * * * * *
19550803 ----G------CGTACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTCGCCGTAGC
386 CCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGC
* * * * *
19550858 TCATGCCGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGTCACCATCATCGGAGCA
451 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCA
* * * * * * *
19550923 TCGTCAGAGAACCTGACCGGCGACATTATGGTTTCGACGATCGGGGGGGCCGGGGGGTGCGTGCA
516 TCGTCGGAGAACCTGA-CAGCGGCATT-GGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCA
** **
19550988 GGTGATGTGCGATGGGTGCCAATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
579 CATGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * * * *
19551053 AGAACTCACACCTCTTTAAAGAGCATTTGAGATTTT-GTAGGTTTGCTGCCAGTAGCCATTAAAA
644 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACT-GGTTTGCTGCCAATAGCCATTAAAG
19551117 TGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
708 TGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * * *
19551182 AATTTTTTTGTGCATGCTAACAAAAATACAAGGATAACGTCTACTATGTTTGATGCCAAAACTCC
773 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-TTCCAAAACTCC
* * * * * *
19551247 TTTCAAAAAAATTTTAAAAAACCCCGAACCGTAAAAAGTTTGGAAAATTGTGAAAAATTGAAA
837 TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAA
19551310 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
1 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
** *
19551375 ATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGAT
66 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
19551440 CCACGGGTTACGCATCCCGTATCTCTGGCCGGCGTAGTGCCCACCCGCCCGACCGCT--CGCTCG
131 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-ACC-CTCCCGCTCG
* * * * *
19551503 ATTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTATAAGATCAGA-CTGAACCGAGGGT
194 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-A-CGAGGGT
* * * * * * *
19551567 TGCGGCAAAAAGTTCAGCAAAACGCAGTGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCC
257 TGCGACAGAAGGATCAGCAACACGCAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCC
* * * * * *
19551632 CCTCTGGTCGGTTGATCG-CCCGCACACTCGTTTCGTGGGTTGACTTAAGCATATGAAGTTCATT
322 CCTCTGGCCGGCTG-TGGACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATT
* *
19551696 CCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGCGGTAGC
386 CCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGC
* * * * *
19551761 ACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATTACCGAAGCA
451 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCA
* * *
19551826 TCATCGGAGAACCTGACTAGCGGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCC
516 TCGTCGGAGAACCTGAC-AGCGGCATT-GGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCA
*
19551891 CATGATGTGTGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
579 CATGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* *
19551956 AGAACTCACACCCCCTTACAGAGCATTTGAGATTTTACTGGTTTGCTGCCAATAGCCATGAAAGT
644 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAATAGCCATTAAAGT
* * * * *
19552021 GTTTGAAATAGGGACACCTTTTTCAAATGATCACAAAATCATGTATACTTCGAGTTTTTAGCTGA
709 GTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
19552086 ATTTTTTTATGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGTTTCAAAACTACT
774 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GTTCCAAAACTCCT
* * *
19552150 TCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAA
838 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAA
*
19552212 ACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
1 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * * *
19552277 ATAAAAATGGCTTTGGCATGCAGACATATGAAGATGTGCCTAAACCTACCTACCACCCTACCAAT
66 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
19552342 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCTCCCGCTTGTT
131 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCTCCCGCTCGTT
* * * * *
19552407 TCGTCGGTCGGCTTAGGCGTATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTAC
196 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGC
* * * * * * * *
19552472 GACAGCAGGATCAGCACCATGTAGAGGGGGACCCGGCCGAATCCC-GACATACGCATCCCACCCC
260 GACAGAAGGATCAGCAACACGCAGAGGGGGACCCGGCCG-ATCCCTGGCTTGCGCATCCCGCCCC
* *
19552536 TCTGGCCGACTGTGGACCCGGACGCTCGTTTCGTGGGTTGACTTAGGCATAT-AGAGTTCATTCC
324 TCTGGCCGGCTGTGGACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATATGA-AGTTCATTCC
* * ** * * *
19552600 GAGTCTAAGCATACGGAGTTCATTCATAGTCTAAGATCAGACCAGACCGAGGTTTGTGGCAGCAC
388 CAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAC
* * *
19552665 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCAGC
453 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATC
* ** ** *
19552730 GTCGGAGAACCTGACCGACGGCATTGGGTTCCGGGGATCAGGGGGATCGGGGGGGTGTGCGCACA
518 GTCGGAGAACCTGACAG-CGGCATTGGGTTCCGACGATC-GGGGGGGCCGGGGGGTGTGCGCACA
* *
19552795 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAG
581 TGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * * *
19552860 AACTCATATCCCCTTAAAGAGCATTTGCGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGT
646 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAATAGCCATTAAAGTGT
*
19552925 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
711 CTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
19552990 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-TTGGCCAAAACTCCTT
776 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTT--CCAAAACTCCTT
* * * * *
19553054 CCGAAAAAATTTTAAAATATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAGTAGAAA
839 CCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAA
*
19553115 ACAAGT-GATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
1 ACGAGTCG-TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
** *
19553179 CATAAAAATTTCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
65 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * ** *
19553244 TTCACGGCTTGCGCATCCCATCCCTCTGGCTGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGT
130 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCTCCCGCTCGT
* *
19553309 TTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAAGGATTG
195 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACG-AGGGTTG
* ** * ** *
19553374 C-AGCAGTAGGATTGGCAGCACGCAGAGGGGGATGCAGCCGATCCCTGGCTTGCGCATCCCGCCC
259 CGA-CAGAAGGATCAGCAACACGCAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCC
* * * * * * * *
19553438 CTCTGGCCGGCTGAGCACTCGAACGCTCATTTCGTAGGTCGACTTAGGCATACGGAGTTCATTCC
323 CTCTGGCCGGCTGTGGACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCC
19553503 CAGTCTAA
388 CAGTCTAA
19553511 GATCAGACTA
Statistics
Matches: 2633, Mismatches: 358, Indels: 151
0.84 0.11 0.05
Matches are distributed among these distances:
863 86 0.03
869 3 0.00
870 1 0.00
872 1 0.00
873 447 0.17
874 45 0.02
875 2 0.00
876 7 0.00
877 142 0.05
878 5 0.00
879 4 0.00
881 1 0.00
882 1 0.00
883 2 0.00
884 6 0.00
885 2 0.00
886 1 0.00
887 5 0.00
888 188 0.07
889 104 0.04
890 6 0.00
897 1 0.00
900 2 0.00
901 21 0.01
902 769 0.29
903 780 0.30
904 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCTCCCGCTCGTT
TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTGCG
ACAGAAGGATCAGCAACACGCAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTC
TGGCCGGCTGTGGACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAG
TCTAACCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATG
CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGTC
GGAGAACCTGACAGCGGCATTGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTTCCAAAACTCCTTCCGAAAA
AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAA
Found at i:19553500 original size:903 final size:900
Alignment explanation
Indices: 19549549--19553511 Score: 4998
Period size: 902 Copynumber: 4.4 Consensus size: 900
19549539 TAAAAAGCAT
* * **
19549549 ACGAGTCGTCTTGCCATGAAATTTGACGTGAAGGCTTAAGGGACTGTTGTATGAATTTACAAGCC
1 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
19549614 ATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGAT
66 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * *
19549679 CCATGGCTTACGAATCCCGTCTCTCTGGCCGACGTAATGCCCGCCCGCCCGT----TCGCTCTTT
131 CCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTT
* * * * *
19549740 TCGTCAGTTGGCTTAGGCATATGGATTTC-TTTCCAGTCTAAGATCAGACCAGACTGAGGGTTAC
196 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGC
* * * * ** *
19549804 GGTAGTAGGATCGACAGCACGCAGAGAAGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCT
260 AGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGAT-CCCGGCTTGCGCATCCCGCCCCT
* * * * *
19549869 CTGGCTGGCTGAGCAGCCCCACGCTCATTTCATGTGTTGACTTAGGCATAAGGAGTTCATTCCCA
324 CTGGCCGGCTGAGCA-CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
** * *
19549934 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCAAGGGTTGCGCCAGCACAT
388 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCACAT
* * * *
19549999 GCTGGGCTCGAGCATGTGCTAGTGCCACATTTTTCTTCGTCGGGG------CA-C----CATCGT
453 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGT
** * * *
19550053 CGGAGAACCTGACCGACGACATTTTGGTTCCGGCGATAGGAGGGGCCGGGGAGGTGTGCGCACAT
518 CGGAGAACCTGACCGACGACATTAGGGTTCCGACGATCGGGGGGGCCGGGG-GGTGTGCGCACAT
* * * *
19550118 GATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
582 GATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
19550183 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTC
647 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTC
* * * * * *
19550248 TAAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTTGAATTTTTAGCTGACTT
712 TGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * ** *
19550313 TTTTTGTGCATGCCAAAAAAAATGCAAGGATCACGTCTAACAAGTTTGGGGCCAAAATTACTTCC
777 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTTGGCCAAAACTACTTCC
**
19550378 GAAAAAATTTTAAAAAATCCCGAACAACAAAAAGTTTTGAAAATCATGAAAAATAGAAA
842 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAA
*
19550437 ACGAGTCGTCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
1 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
**
19550502 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACAAACCACCCTATCGAT
66 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * *
19550567 CCACGGCTTTCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCG-CC-CAC--CCGCCCGCTCGTT
131 CCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTT
* * * **
19550628 TCATCGGTTGGCTTGGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGACTTGC
196 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGC
* **
19550693 AGAAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATTCCCGGCTTGCGCATCCCGCCCCT
260 AGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGA-TCCCGGCTTGCGCATCCCGCCCCT
* * * * *
19550758 TTGGCCGGTTGAGCGCCTGCACG-TCCATTTCGTGGGTTCACTTAGGCGTACGGAGTTCATTCCC
324 CTGGCCGGCTGAGCACC-GCACGCT-CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * *
19550822 AGTCTAAG-AT-C-G-G---------A-TC---G---------GACCGAGGGTCGCCGTAGCTCA
387 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCACA
* * * *
19550861 TGCCGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGTCACCATCATCGGAGCATCG
452 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCG
* * * * * * **
19550926 TCAGAGAACCTGACCGGCGACATTATGGTTTCGACGATCGGGGGGGCCGGGGGGTGCGTGCAGGT
517 TCGGAGAACCTGACCGACGACATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACAT
**
19550991 GATGTGCGATGGGTGCCAATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
582 GATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * ** * *
19551056 ACTCACACCTCTTTAAAGAGCATTTGAGATTTTGTAGGTTTGCTGCCAGTAGCCATTAAAATGTC
647 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTC
19551121 TGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
712 TGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * * * *
19551186 TTTTTGTGCATGCTAACAAAAATACAAGGATAACGTCTACTATGTTTGAT-GCCAAAACTCCTTT
777 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-TTGGCCAAAACTACTTC
* * * * ** *
19551250 CAAAAAAATTTTAAAAAACCCCGAACCGTAAAAAGTTTGGAAAATTGTGAAAAATTGAAA
841 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAA
19551310 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
1 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
** *
19551375 ATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGAT
66 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * *
19551440 CCACGGGTTACGCATCCCGTATCTCTGGCCGGCGTAGTGCCCACCCGCCCGACCGCTCGCTCGAT
131 CCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTT
* * * *
19551505 TCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTATAAGATCAGA-CTGAACCGAGGGTTG
196 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-A-CGAGGGTTG
* ** * * * ** * *
19551569 CGGCAAAAAGTTCAGCAAAACGCAGTGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCC
259 CAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCC-GGCTTGCGCATCCCGCCCC
* * * * * * *
19551634 TCTGGTCGGTTGATCGC-CCGCACACTCGTTTCGTGGGTTGACTTAAGCATATGAAGTTCATTCC
323 TCTGGCCGGCTGA--GCACCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * *
19551698 CAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGCGGTAGCAC
386 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAC
* * * * *
19551763 ATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATTACCGAAGCATC
451 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATC
* * ** * *
19551828 ATCGGAGAACCTGA-CTAGCGGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCCC
516 GTCGGAGAACCTGACCGA-CGACATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCAC
*
19551892 ATGATGTGTGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
580 ATGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
19551957 GAACTCACACCCCCTTACAGAGCATTTGAGATTTTACTGGTTTGCTGCCAATAGCCATGAAAGTG
645 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTG
* * * * *
19552022 TTTGAAATAGGGACACCTTTTTCAAATGATCACAAAATCATGTATACTTCGAGTTTTTAGCTGAA
710 TCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
19552087 TTTTTTTATGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAG--TTTGGTTTCAAAACTAC
775 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTTGG--CCAAAACTAC
* *
19552149 TTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAA
838 TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAA
*
19552212 ACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
1 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * * *
19552277 ATAAAAATGGCTTTGGCATGCAGACATATGAAGATGTGCCTAAACCTACCTACCACCCTACCAAT
66 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * ** * *
19552342 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCTCCCGCTTGTT
131 CCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTT
* * * * *
19552407 TCGTCGGTCGGCTTAGGCGTATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTAC
196 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGC
* * * * * * * *
19552472 -GACAGCAGGATCAGCACCATGTAGAGGGGGACCCGGCCGAATCCCGACATACGCATCCCACCCC
260 AG-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCG-ATCCCGGCTTGCGCATCCCGCCCC
* * * * * ** *
19552536 TCTGGCCGACTGTGGACCCGGACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCG
323 TCTGGCCGGCTGAGCA-CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
** * * *
19552601 AGTCTAAGCATACGGAGTTCATTCATAGTCTAAGATCAGACCAGACCGAGGTTTGTGGCAGCACA
387 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCACA
* * *
19552666 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCAGCG
452 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCG
* ** ** *
19552731 TCGGAGAACCTGACCGACGGCATT-GGGTTCCGGGGATCAGGGGGATCGGGGGGGTGTGCGCACA
517 TCGGAGAACCTGACCGACGACATTAGGGTTCCGACGATC-GGGGGGGCCGGGGGGTGTGCGCACA
* *
19552795 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAG
581 TGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
19552860 AACTCATATCCCCTTAAAGAGCATTTGCGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGT
646 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGT
*
19552925 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
711 CTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
*
19552990 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTTGGCCAAAACTCCTTC
776 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTTGGCCAAAACTACTTC
* * ** * *
19553055 CGAAAAAATTTTAAAATATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAGTAGAAA
841 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAA
*
19553115 ACAAGT-GATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
1 ACGAGTCG-TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
** *
19553179 CATAAAAATTTCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
65 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * *
19553244 TTCACGGCTTGCGCATCCCATCCCTCTGGCTGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGT
130 TCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGT
* *
19553309 TTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAAGGATTG
195 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACG-AGGGTTG
* * ** *
19553374 CAGCAGTAGGATTGGCAGCACGCAGAGGGGGATGCAGCCGATCCCTGGCTTGCGCATCCCGCCCC
259 CAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCC-GGCTTGCGCATCCCGCCCC
* * *
19553439 TCTGGCCGGCTGAGCACTCGAACGCTCATTTCGTAGGTCGACTTAGGCATACGGAGTTCATTCCC
323 TCTGGCCGGCTGAGCAC-CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
19553504 AGTCTAAG
387 AGTCTAAG
19553512 ATCAGACTAG
Statistics
Matches: 2634, Mismatches: 366, Indels: 135
0.84 0.12 0.04
Matches are distributed among these distances:
863 56 0.02
869 2 0.00
870 1 0.00
872 1 0.00
873 450 0.17
874 52 0.02
875 4 0.00
876 7 0.00
877 166 0.06
878 6 0.00
879 3 0.00
880 1 0.00
881 1 0.00
885 1 0.00
886 3 0.00
887 3 0.00
888 195 0.07
889 141 0.05
890 2 0.00
891 2 0.00
894 1 0.00
899 1 0.00
900 3 0.00
901 13 0.00
902 765 0.29
903 748 0.28
904 1 0.00
905 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTT
TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTGCA
GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCGGCTTGCGCATCCCGCCCCTCT
GGCCGGCTGAGCACCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCACATGCT
GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGTCGG
AGAACCTGACCGACGACATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTTGGCCAAAACTACTTCCGAAA
AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAA
Found at i:19555183 original size:26 final size:26
Alignment explanation
Indices: 19555131--19555183 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19555121 GTTGACTTAG
* *
19555131 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAACATAA
* *
19555157 GCATACGGAGTTCATTCCCAATATAA
1 GCATACAGAGTTCATTCCCAACATAA
19555183 G
1 G
19555184 ATTGGGCCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAACATAA
Found at i:19557260 original size:26 final size:26
Alignment explanation
Indices: 19557223--19557275 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19557213 GTTGACTTAG
19557223 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
19557249 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19557275 G
1 G
19557276 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19558151 original size:26 final size:26
Alignment explanation
Indices: 19558114--19558166 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19558104 GTTGACTTAG
*
19558114 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
19558140 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19558166 G
1 G
19558167 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19558589 original size:896 final size:893
Alignment explanation
Indices: 19556445--19567122 Score: 4605
Period size: 907 Copynumber: 11.7 Consensus size: 893
19556435 CAAGCTTGCC
* * * *
19556445 GGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGG
1 GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
* *
19556510 GGTTTGGGGGGGTGTGCACGC-AA-GATGTGCGAT-GGTCCTGGTACTTGGCCCTTATATTGGCC
66 GGGTTGGGGGGGTGTG--CGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
19556572 CCCTATCCCTCATGAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
129 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * * * *
19556637 TGCAGCGAGTAGCAATTAAAATGTTTGAAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
194 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACACTTTTTTCAAACGGTCACAAAATCTTGT
* * * *
19556702 ACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAGAATACAAGGATCACGTCTACG
259 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACC
* * * * *
19556767 AAGATTGGGGCCAAAAATCCTTCCGAAAAAATTTTACAAAATCCCGAACCGCAAAAAGTTTCGAA
324 AAGATTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAA
* * * * *
19556832 AAGCGTGAAAAATAGAAAACGAGTTGTCTTGGCATGAAACTTCACGTGATGGCTTAAGGGACCAT
389 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
19556897 TGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
454 TGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * * * * *
19556962 ACCTACCACCCTATCGATCTACGACTTGCGTATCCCATCTCCCTGGCCGGCTTAGTGCCCGCCCG
519 ACCTACCACCCTATCGATCCACGGCTTGCGCATCTCATCTCTCTGGCCGACGTAGTGCCCGCCC-
* * **
19557027 TCTGCTCGCCTTCCTGGTTGTTTCGTCGATTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAG
583 -C-GCCCG-C-T-C--G-T-TTT-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
19557092 ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGAT-GATCC
638 ATCAGACC-GAACGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA-CCGATCGATCC
* *
19557156 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTT
701 CCGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTT
* * * *
19557221 AGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAACCGG
766 AGGCATACGAAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGG
*
19557286 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT-GCTG-ATTTTTCTTCCCT
831 ACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGGC-GCATTTTTCTTCCCT
* * * * *
19557348 GGGGTACCATCGTCGGAGCATCGTCGGAGAACCTGATCGACGGCATTGGAGTTCCAACGATCGGG
1 GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
** * * *
19557413 GGG--CCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA-TTGGCCCTTATATTGGTCCG
66 GGGTTGGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
19557475 TTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTCAAA-AGTATTTGAGATTTTACAGGTTT
131 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTT
* * * **
19557539 GCTGCCGGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCTAACGGTCGTAAAATCTTGT
195 GCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAACGGTCACAAAATCTTGT
* * * * *
19557604 TCATTTCGAGTTTTTAGCTGAATGTTTTTGTACA-AGCCAAAAAAAATACAAGGATCACGTCTAC
259 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATA-CCAACAAAAATACAAGGATCACGTCTAC
* * **
19557668 CAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAA
323 CAAGATTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAA
* * ** *
19557733 AAATCGTGAAAAATAGAAAATGAGTCGTCTTGGAATGAAACTTCACATGAAGG-TTCAAGGGACC
388 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACC
* * ** * * *
19557797 ATTGTATGAATTTACAAGCCATGAAAATGGCATTCACCCGTAAAAATATGAAGATATGCCTAAAC
452 ATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * *
19557862 CCACCTACCACCCTATCGATCCACGGCTTGCACATCTCGTCTCTCTAGTCGACGTAGTGCCCG-C
517 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCATCTCTCTGGCCGACGTAGTGCCCGCC
* *
19557926 CCGCCCGCTCGTTTTGTCGGTAGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
582 CCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * *
19557991 AATCGAGGGTTGCGGCAGTAGGATTGGCAGCAGGCAGAGGGGGACTCGGTCGATCCCCGGCTTCC
647 AA-CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC-CGATCGATCCCCGGCTTGC
19558056 GCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACG
710 GCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACG
19558121 AAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGT
775 AAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGT
*
19558186 TGCGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGGCGCATTTTTCTTCCCT
840 TGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGGCGCATTTTTCTTCCCT
* *
19558240 GGGGCACCATCGCCAGAGCATCGTTGGAGAACCTGACCGACGGCATTGGGGTTCC-AGCGATCGG
1 GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGG
*
19558304 GGGGTTGGGTGGGGTGTGCGCAAATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
65 GGGGTTGGG-GGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
** * * * *
19558369 CGTTATCTCTCATCAAACCTTGAGAACTCACACCGCCTTAAAGAGCATTTCAGATTTTACAGGTT
129 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
19558434 TGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGAGACTTTTTTCAAATGGTCACAAAATCTTG
194 TGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAACGGTCACAAAATCTTG
* *
19558499 TACAGTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACGAAAATACAAGGATCACGTCTAC
258 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTAC
*
19558564 CAAGCTTGGGGCCAAAA-TGCCTTTCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCA
323 CAAGATTGGGGCCAAAACT-CCTTTCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCA
19558628 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
387 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
19558693 ATTGTATGAATTTACAAGGCCATAAAAATAGCATTGGCATGTAGAAATATGAAGATGTGCCTAAA
452 ATTGTATGAATTTACAA-GCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAA
* * * * *
19558758 CCCACCTATCACCCTATCGATCCACGGCTTGTGCATCTCATTTCTCTGGCCGGACATAGTACCCG
516 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCATCTCTCTGGCC-GACGTAGTGCCCG
* * * * *
19558823 TCTGTCCGCCAGCTCGTTTTGTCAGTTGGCTTAGGCATACGGTGTTCATTCCCAGTCTAAAATCA
580 -C--CCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * *
19558888 GACCGGACTGAGGATTACGACAGCAGGATCGGCAGCATGC-GAAGGGGGACCTGACCGATCCCCG
642 GACCGAAC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG-AGGGGGACC-GATCGATCCCCG
* * * *
19558952 ACTTGCGCAT-CTCGCCCCTCTGGTCGGCTGAGCG-TCGCACGCTTATTTCGT-GG--G---T--
704 GCTTGCGCATCCT-GCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAG
** *
19559007 ---T--G-A---C--T-T-AG--T---CATACGGAGTTCATTCCCAGTCTAAGATCGGACTATAT
768 GCATACGAAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAC
* * * **
19559054 CGAGGGTTGTGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTTGCT
833 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGGCGCATTTTTCTTCCCT
* * *
19559115 -GGG-A-CA----C----CATCATCGGAGAACCTGACCGACGACATTGGGGTTCCGATGATCGGC
1 GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-
* * * * *
19559169 GGGGTCGGGGGGTTGTGCGCACATGATGTGCGAAGGGTGCTGGTGCTTGGCCCTTATATTGGCCC
65 GGGGTTGGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
19559234 CCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTT
130 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
19559299 GCTGGCAGTAGCCATTAAAGTGTTTGAAATGAGGACACTTTTTTCAAACGGTCACAAAATCTTGT
195 GCTGCCAGTAGCCATTAAAGTGTCTGAAATG-GGACACTTTTTTCAAACGGTCACAAAATCTTGT
*
19559364 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
259 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACC
* * *
19559429 -AGGTTTGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAA
324 AAGATTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAA
* *
19559492 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAATTTCACGTGAAGGCTTAAGGCACCAT
389 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
19559557 TGTGTGAATTTACAAGCCATGAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAACCC
454 TGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAACCC
* *
19559622 ACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCTA
519 ACCTACCACCCTATCGATCCACGGCTTGCGCATCTCATCTCTCTGGCCGACGTAGTGCCCG-C--
* * * *
19559687 CCCGCCTGCTTGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATC
581 CCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-C
* * * * * * *** *
19559752 GGACCGAGGGTTATCGGCAGCA-CAT--GCTAGGCTCGATCATGTGGTGGTG-CCGTATTTTTCT
645 CGAACGAGGGTT-GCGGCAGCAGGATCGGC-A-GCACG--CA-GAGG-GG-GACCG-ATCGATCC
* * * * * * *** * * * * *
19559813 TCGTC-GGAGCAACGCCGGAGAACT-TGATCGGCAGCATTGGGGTTCCGACAATCGGGGGGGTCA
701 CCGGCTTGCGC-A-TCCTG-CCCCTCTGGTCGGCTG-A---GCG-CCCG-C-A-C-----GCTCA
*** * * * * * ** * *** * *****
19559876 -GAGGGGGTGTGTGCACATGATG--TGCGAAGGGTGC--TGGCACT-TGCCCTTATATTGTCCCC
750 TTTTGTGG-GT-TG-AC-TTAGGCATACGAA--GTTCATTCTCAGTCTAAGC--ATA-CGGAGTT
* * ** ** *** *** * ** * *** *
19559935 CTATCCCTCA-TCAAACCTCGAGAACTCAAACC--CCCTTAAAAC-GTATTTG-AGATTTTACAG
806 C-ATTCC-CAGTCTAAGATCG-G-ACT-GGACCGAGGGTTGCGACAGCACATGCTG-GGCT-CGG
** * *** * * ****
19559995 GTTTCCTGCCAATAGC-CATTAAAGTGTCTAAAAT
864 GCAT-GTGCTGGTGGCGCATT----TTTCTTCCCT
** *** * * ** * * * * ** *
19560029 GGGGACACTTTTTTC--A-AATGGTCATAAAATCTTGTA-C-AC--C--TAGAGTT-----TTTT
1 GGGG-CACCATCGCCGGAGCATCGTCGGAGAA-CCTG-ACCGACGGCATTGGGGTTCCGACGATC
* ** ***** ** ** * * * * * *
19560080 GGTGAATT-TTTTTGTGCATGC-CAAAAAAAATAC-AAGGATCACCT-CTACCAGGTTTGGGGCC
63 GGGGGGTTGGGGGGGTG--TGCGCAAATGATGTGCGATGGGT--GCTGGTA-C----TT-GGCCC
* * * **** ** **** ** * ** * ***** * * * ***
19560141 -AAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGT-A-AAATGTTTCAAAAATCGTGAA
118 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA-C-TCACACCCCCTT-AAAGAGCATTTG
* *** * * * * * * *
19560203 AAATAGAAAACGAG-TTGTCTTGCCATGAAACTTCACGTGAAG-G-CT-TAA-GGGACCATTGTA
180 AGATTTTACA-G-GTTTG-C-TGCCA-GTAGC--CA-TTAAAGTGTCTGAAATGGGA-CACT-T-
* ** * * * * * * ** * *** *****
19560263 TGAATTTACAAGCCAT-A-AAAATGGCAATG-GCACATAGAAATATGAAGATG--TGCCTAAACC
234 T---TTT-CAAACGGTCACAAAAT--C-TTGTACACTTCG-AGTTTTTAGCTGAATTTTTTTGTG
* *** * * ** *** *
19560323 CACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCT-CTCTGGCCGGCGTAGTGCCCACC
291 CA--TACCA-AC-AAAAAT--ACA---AG-G-ATCACGTCTAC-CAAGATTG-G--G-G-CCA-A
** **** * * * **** * * ** **
19560387 CGCTCCTTTCG--TCGGTTGGCTTAGGCATATGGAGTTCTTTCCCAGTCTAAGA-TTGGAGTGAA
338 AACTCCTTTCGAAAAAATT---TTA---A-A--AAATCCCGAACCA--CAAAAAGTTTCA-AAAA
* ***** * * * * * * ** * * ***
19560449 CCGATGGTTGCGGTAGCAGGATCG-GTAG-CATGCGGAGGGGGACATGACCGATCCCTGGCTTGT
391 TC-AT-G-AAAAATAG-A-AAACGAGTCGTCTTGC-CA-TGAAACTTCA-CG-T-GAAGGC-T-T
*** * * ** * *** *** * * *** ** *
19560512 GCATCCCGACCCTCTGGT-CG-GCTGAGC--GCCCGCACGCTCG-TTTCGTGGGTTG-ACT-T-A
444 --A-AGGGACCAT-T-GTATGAATTTA-CAAGCCATAAAAATGGCATTCGCATGCAGAAATATGA
* ** * * ** * *
19560569 GGCA--TG-C-AAAGTTCA-TTCCCAGTCTA-AGCAT--ACGGGTT---CAT-TCCTAGTCTAAG
503 AG-ATGTGCCTAAA-CCCACCTACCACCCTATCG-ATCCACGGCTTGCGCATCT-C-A-TCT---
* * * ** * * *
19560622 AT-TGGATCGGACCG-AGGGTTACGACATCACATGCCAGGCTCGGGCATTTGTCGG-TGCTGCAT
559 CTCTGG--CCGA-CGTAGTG-CCCG-C--C-C-CGCC-CGCTC--G-TTTTGTCGGTTG--GC-T
*** * * * * *
19560684 TTTTCTTCAACGG-G-GCA---CCA-TCGTTGGAGCATC-G-CCAGAGAACCTGACCGGTGGCAT
608 TAGGCAT--ACGGAGTTCATTCCCAGTC--T-AAG-ATCAGACC---GAA-C-GA-GGGTTGC--
** ***** * * *** *
19560741 TGGC-TTAGGCATACGG-AGTTCATTC-CTAGTCTAAGATCAGACTGGA-CTAAAGGTTGTGCTA
659 -GGCAGCAGG-AT-CGGCAG--CA--CGC-AGAGGGGGA-CCGA-TCGATC-CCCGGCT-TGC--
* **** * * * * **
19560802 GCAGGATCGGTAGCACGCAGAGGGGGACCCGAGCTTGTGCATCCCGC-CCCTC-TGGTCGGCTGA
710 GC---ATC-CT-GC-C-C--CTCTGG--TCG-GC-TGAGC-GCCCGCACGCTCAT--TTTG-TG-
** * * ** ** *
19560865 ACGCCCGCACGCTCGTTTCGTGGGTTGACTTAG-GCATACAGAGTTCATTCCCAGTCTAAGCATA
757 --G---G-TTG-AC--TT--AGGCAT-ACGAAGTTCAT-------TC--T--CAGTCTAAGCATA
* * * * * ** * * *
19560929 CAGAGTTCATTCCCAATCTAAGATCAGAGTAGACCGAGGGTTGCGGTAACAGATGCTGGGATCGG
799 CGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGG
*
19560994 GCATGTGCTGGTGTCGCATTTTTCTTCACC-
864 GCATGTGCTGGTGGCGCATTTTTCTTC-CCT
* * * * * * *
19561024 AGGGCACCATCGTCGGAGCATCGCCGGAGAACCTAACCGACGGCATTAGAGTTCCGACAATCGGG
1 GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GG
** * * * *
19561089 GGGGCCGGGGGGGTGTG-GCACATGTTGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCAC
65 GGGGTTGGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
19561153 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
130 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
19561218 GCTGCAAGTAGCCATTAAAGTG-CTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTC
195 GCTGCCAGTAGCCATTAAAGTGTC-TGAAAT-GGGACACTTTTTTCAAACGGTCACAAAATCTTG
* * * * * *
19561282 TACGCTTCAAATTTTTAGCTGAA-TGTTTTGTACATACCAACAAAAATACAAGGATCAAGTCTAC
258 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTAC
* * * * **
19561346 CAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTGAAAAATCTCAAACCGTAAAAAGTTTCAA
323 CAAGATTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAA
* * *
19561411 AAATCATGAAAAATAGAAAACGAGTCTTCTTGCCATGAAACTTCACTTGAGGGCTTAAGGGACCA
388 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
19561476 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATAAAGATGTGCCTAAACC
453 TTGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * *
19561541 AACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCACTCTGGCC-AGCGTAGTGCTTGCC
518 CACCTACCACCCTATCGATCCACGGCTTGCGCATCTCATCTCTCTGGCCGA-CGTA--G--TGCC
* * * * * *
19561605 CGCCCGCCCGCCCACTCGTTTCGTCCGTTGGCTTAGGCATACGGACTTTATTCCCAATCTAAGAT
578 CG--C-CCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * *
19561670 CAGACCAGATCGAGGGTTGCGACAGTAGGATCGGTAGCACGTAGAGGGGGACCCGGTCGATCCCC
640 CAGACC-GAACGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA-CCGATCGATCCCC
* * * * * * * *
19561735 GGCTTGTGTATCCCGCCCCTCTTGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
703 GGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAG
* * *
19561800 TCATACGAAGTTCATTCCCAATCTAAG-AT-C-G-G---A----C---C----A---GACT----
768 GCATACGAAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAC
* * * * * *
19561840 -GAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTTGCC-
833 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGGCGCATTTTTC-TTCCCT
* * * ** * *
19561900 -GGG-A-CA----C----CATCATCGGAAAACCTGATCGGTGGCATTTGGGTTCCGATGATCAGG
1 GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GG
* * * *
19561954 GGGGTCGGGGGGGTGTGCACACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
65 GGGGTTGGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
19562019 CCTATCCCTCATCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGGGATTTTACAGGTTT
130 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * *
19562084 GCTGCCAGTAGCCATTAAAGTGTTTGGAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGT
195 GCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAACGGTCACAAAATCTTGT
* *
19562149 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
259 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACC
* * * * **
19562214 AAGTTTGGGACCAAAACGCC-TTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
324 AAGATTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAA
*
19562278 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCA
388 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
19562343 TTGTATGAATTTACAAGCCATGAAAATAGCATTCGCATGCAGAAATATGAAGATGTACCTAAACC
453 TTGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAACC
* * *
19562408 CACCTACCACCCTATCGATTCACGGCTTGCGCATCTCGTCTCTCTGGTC-AGCGTAGTGCCCGCC
518 CACCTACCACCCTATCGATCCACGGCTTGCGCATCTCATCTCTCTGGCCGA-CGTAGT-------
*
19562472 GACCCGCCCGCCGCTCGCCAGCTCGCTCCTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCC
575 G-CCCG-CC-CCG--C-CC-GCTCG-T--TTT-GTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * *
19562537 CTGTCTAAGATCAGATCGGACCGAGGGTTACGACAGCAGGATCGGTAGCACGCAGAGGGGGACCC
629 CAGTCTAAGATCAGA-CCGAACGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA-CC
* ** * * * * * ** *
19562602 GGTCGATCCCTTGCTTGTGCATCCCG-CCC-C----CGGCTAAGCGCCCGCACGCCCGTTTCATA
692 GATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTTGTG
*
19562661 GGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
757 GGTTGACTTAGGCATACGA-AGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * * *
19562725 AT-AGACCGGATCGAGGGCTGCGACAGCACATGATGGGCTCGAGCATGTGCCGGTGCCGCATTTT
821 ATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGGCGCATTTT
*
19562789 TCTT-CGT
886 TCTTCCCT
** * * * *** * *
19562796 CGGGGCACCATCGCCAAAGCATCGCCGGAGAACCAT-ACGGA-GTTCATTCCCAG-T-CTAAGAT
1 -GGGGCACCATCGCCGGAGCATCGTCGGAGAACC-TGACCGACG-GCATT-GGGGTTCCGACGAT
*** *** * * * * * * * * *
19562857 CGGACTAGACCGAGGGTTACGAT-AGCACATGCTG-G-GCT-TGTGCATGTGT-CGGTGCCCCAT
62 CGG-GGGGTTGGGGGGGT--G-TGCGCAAATGATGTGCGATGGGTGC-TG-GTAC-TTGGCCC--
* * * * * * * * * ** *** * **
19562917 TTTTCTTCATCGGGGCACC-AT-CGTCGGAGC-ATCGTCGGAGCATCGTCGGAGAACCTGACCGG
118 --TT-AT-AT-TGGCCCCCTATCCCTC--ATCAAACCTC-GAG-AAC-TCACACCCCCTTA-AAG
* * * ** *** * *** * * * *
19562979 CGGCA-TTGGGGTTCCGACGATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
172 -AGCATTTGAGATT-TTAC-A--GGTTTGC--TGCCAGT-AGC-C---AT-T--AAAGTGT-CT-
* * * * * * * ** *
19563043 GTACTTGG-CCCTTATATTGGCCCCCTATCCCTCATC-AAACCTTGAGAACTCACACCCCCTTAA
220 GAAATGGGACACTT-T-TT-----TCAAACGGTCA-CAAAATCTT--G---T-ACA----CTT--
* ** * * ** ** *
19563106 AGAGCATTT-G-AGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGA-CA
265 CGAGTTTTTAGCTGAATTTT----TTTG-TG-CA-TA-CCAACAAA---AAT-ACA--AGGATCA
* * ** * ** *** **
19563168 CTTTTTTCAA-A-T-GGTCACAAAATCTTGTACAC-TTCG---AGTTTTTAGCTGAATTTTTTTG
316 CGTCTACCAAGATTGGGGC-CAAAA-C---T-C-CTTTCGAAAAAATTTTA----AA--AAATCC
* * ** * * * ** * *
19563226 TGCATGCCA-AAAAAAATACGAGGATAA-CGTGTACCAAGTTTGGGGCAAA--AGTC--CTT-CC
368 CG-A-ACCACAAAAAGTTTC-A--AAAATCATG-A--AA-AAT--AGAAAACGAGTCGTCTTGCC
* * * ** ** * * ** * **
19563284 GA-AAAATTTTA--AAAAAACCT---GAACCA---TAAAAAGTTTCAAAAATCATGAAAAATAGA
422 -ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTT-ACAAGCCAT-AAAAAT-G-
* * * * * ** *** ** *
19563340 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
481 --GC-ATTCG-CATG-CA-GAAA--T---ATGAA-G---ATGTG-CC--TAAACCCACCTACCA-
* * * ** * * * * * *
19563405 ACATAAAAATGGTACTAGCACACAGAAATATGAAG-ATGTGCCTAAACCCACCT-GCC-ACCCTA
527 CCCT----ATCG-A-T--C-CAC-G-GCT-TG-CGCA--T--CTCATCTC-TCTGGCCGA-CGTA
** * ** * * ** ** * * **
19563467 -TCGATCCACGCCTTGCGCATTCCG-TCTCTCTGGCCGGCAAAGTGCCTGCCCGCCCGCATGCCC
573 GT-G--CC-CGCCCCGCCCGCT-CGTTTTGTC-GGTTGGCTTAG-GCAT--ACG---G-A-GTTC
* * * * * * * *
19563530 ACTCATTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCGG-ATCG
624 ----A-TTC-CCAG-T--C-TAAG-AT-C--AG---A--CCGAA-CGAGGGTT-G--CGGCAGC-
* * * ** * ** ** * *
19563594 AGGGTTACGCCAGCA-GGATCGA-CAGCACACAGAGGGGGA-CCGGGGCTTGCTCATCCCGCCCC
665 A-GGAT-CGGCAGCACGCA--GAGGGGGAC-C-GA--TCGATCCCCGGCTTGCGCATCCTGCCCC
* * * * *
19563656 TCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTAGACTTAGGCATACGGAGTTCATTCCC
722 TCTGGTCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCTC
* *
19563721 AGTCTAAG-AT-C--AG---A-T--C-G-----GA----A----A--GAGGGTTACGATAGCACA
787 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACA
*
19563760 TGCTGGGCTCGGGCATGTGCTGGT-GCAGTATTTTTCTT--C-
852 TGCTGGGCTCGGGCATGTGCTGGTGGC-GCATTTTTCTTCCCT
* * *
19563799 ---G-----T---CGGAGCATCGTCGGAGAACCTGATCGGCGGCATTGGGGTTCTGACGATCGGG
1 GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GG
* * *
19563853 GGGGCT-GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTT-GCCCTTATATTGGCCC
65 GGGGTTGGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * *
19563916 CCTATCCCTCATCAAACCTCGAGAACTCAAACTCCCTTAAAAAGCATTTGAGATTTTATAGGTTT
130 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * * *
19563981 CCTGCTAGTAGCCATTAAAATGTCTAAAATGTGGACACTTTTTTTCAAATGGTCACAAAATCTTG
195 GCTGCCAGTAGCCATTAAAGTGTCTGAAATG-GGACAC-TTTTTTCAAACGGTCACAAAATCTTG
* * * *
19564046 TACACTCCGAGTTTTTAGCTG-TTTTTATTTGTGCATGCCAACAAAAATACAAGGATCACGACTA
258 TACACTTCGAGTTTTTAGCTGAATTTT-TTTGTGCATACCAACAAAAATACAAGGATCACGTCTA
* * * * * **
19564110 CCAAGGTTGGAGCCAAAACT-CTTTCCGAAAGAATTTAAAAAAATCCCTAACCGTAAAAAGTTTC
322 CCAAGATTGGGGCCAAAACTCCTTT-CGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTC
* * *
19564174 AAAAATCATGAAAAATATAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGTAC
386 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * *
19564239 CATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA
451 CATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAA
* * * * * * * *
19564304 CCCACCTACGACCATATCGATCGACGGCTTGCGCATCCCGTCTCTCTGGTCGGCATAGT----G-
516 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCATCTCTCTGGCCGACGTAGTGCCCGC
* * *
19564364 CCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
581 CCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * *
19564429 AGACCGAGGGTTGCGGTAGCAAGATCGGTAGCACACAGAGGGGGACACGA-CTGATCCTCGGCTT
646 -GAACGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC-CGATC-GATCCCCGGCTT
* * * * * * * *
19564493 GCGCATCTTACCCCTTTAGCCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATA
708 GCGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATA
* * * ** **
19564558 CGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCAGACC-ATG
773 CGAAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGA-G
* *
19564622 GGTTGCGGCAGCACATGCTGGGCTCGGGTATGTGCTGGT-GCTGCA---TT-TT---T
837 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGGC-GCATTTTTCTTCCCT
* *
19564672 -------C-T----------TCGTCGGAGAACCCGACCGACGGTATTGGGGTTCCGACGATCTGG
1 GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GG
* * * * * *
19564719 GGGGTCGGGGGGGTATGCGCACATGATGTGTGATGGATGCTGGTACTT-GCCCTTATATTGTCCC
65 GGGGTTGGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
19564783 CCTATCCCTCATCAAACCTCGAGAACTC-CAACCCCCTTAAAAAGCATTTGAGATTTTACAGGTT
130 CCTATCCCTCATCAAACCTCGAGAACTCAC-ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
19564847 TGCTGCCATTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
194 TGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAACGGTCACAAAATCTTG
** * *
19564912 TACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCACGCCAAAAAAAATACAAGGATCATGTCTA-
258 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTAC
* * * * *
19564975 CAGGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAA
323 CAAGATTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAA
* *
19565040 AAATCGTGAAAAATAGAAAACGCGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCA
388 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
** * *
19565104 TTGTATGAATTTACAAGCCATAAAAATATCAATGGCATGCAGAAATATGAAGATGTGCCTAAACC
453 TTGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * * ** * *
19565169 CACCTACCACCCTATCAATCCACAGCTTGCGCATCCCGTCTCTCTGGTGGGCGT--TG--TG-CC
518 CACCTACCACCCTATCGATCCACGGCTTGCGCATCTCATCTCTCTGGCCGACGTAGTGCCCGCCC
* * * * ** * *
19565229 CGCCTGCTCGTTTCGTCGATTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGG
583 CGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA
* * * * *** * * * *
19565294 ACTGAGGGTTGCAGTAGCAAGATCGGTAGCACATGGAGGGGGACACAACCGATCCCCGGCTCGCA
648 AC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC-CGATCGATCCCCGGCTTGCG
* * * * * * *
19565359 CATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGG
711 CATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGA
* * * ** *
19565424 AGTTCACTCCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCCAACCGGACCGAGGGTT
776 AGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTT
** * *
19565489 GCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT-CAT
841 GCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGGCGCATTTTTCTTCCCT
* ** * **
19565541 CGGGGCACCATCGCCTGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGT
1 -GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-
*** * * * *
19565606 GGGGCCAGGCGGGTGTGTGCGC--ATGATGTGCAATGGGTGCTGGTACTTGGCCATCATATTGGC
64 GGGGGTTGG-GGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
19565669 CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGAATTTGAGATTTTACAGGT
128 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
19565734 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCACATGGTCACAAAATCTT
193 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAACGGTCACAAAATCTT
*
19565799 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT-AGCGTCT
257 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCA-CGTCT
* * * * **
19565863 A-AAAGGTTTGGGACCAAAACTCC-TTCTGAAAAAATTTGAAAAAATCCCGAACTGCAAAAAGTT
321 ACCAA-GATTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTT
* * * *
19565926 TAAAAAATCGTAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
384 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * ** * * *
19565991 ACCATTGTACGAATTTACAAGGCATAAAAATTTCATTGGCACGCAAAAATATGAAGATGTGCCTA
449 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTA
* * * * * *
19566056 AACCCACTTACCACCCTATCGATCCATGGCTTGCGCATCCCCTTTCTCTGGGCGACGTAGTGCCA
514 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCATCTCTCTGGCCGACGTAGT----
** * *
19566121 GCCCGGCCGCTCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGTATACGTAGTTCATTCCCAGT
575 GCCC-GCC-C-CGCCCG----CTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * * *
19566186 CTAAGATCGGACCGAATCGATGGTTGTGGCAGCAAGATCAGCAGCACGTAGAGGGAGACCCGGTC
633 CTAAGATCAGACCGAA-CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA-CCGATC
* * * * * *
19566251 GATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
696 GATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTT
* * *
19566316 GACTTAGGCATACGGAGTTCATTAC-CAGTCTAAGCATATGGAGTTCATTCCCAGGCTAAGATCG
761 GACTTAGGCATACGAAGTTCATT-CTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * *
19566380 GA-TCGAACCAAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGAATTTTTCT
825 GACT-GGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGGCGCATTTTTCT
*
19566444 T-CGT
889 TCCCT
* * *
19566448 CGGGGTACCATCGCCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGAGGTTCCG-CGATCG
1 -GGGGCACCATCG-CCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
* * * * *
19566512 AGGGGCT-GGGGGGTGGTGCGCACATGATTTGCCATGGGTGCT-GTACTTGGCCCTTATATTGGC
64 GGGGGTTGGGGGGGT-GTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
19566575 CCCCTATCCCTCATCAAACCTCGAGTACTCACA-CCCCTTAAAGAGTATTTGAGATTTTACAGGT
128 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
19566639 TTGCTGTCTGTAGCCATTAAAGTGTCTGAAATGCGGACACTTTTTTCAAATGGTCACAAAATCTT
193 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG-GGACACTTTTTTCAAACGGTCACAAAATCTT
*
19566704 GTACACTTC-ATGTTTTTAGCTGAATTTTTTTTGTGCA-AGCCAAAAAAAAATACAAGGATCACG
257 GTACACTTCGA-GTTTTTAGCTGAA-TTTTTTTGTGCATA-CC-AACAAAAATACAAGGATCACG
* * *
19566767 TTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAG
318 -TCTACCAAGATTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAG
*
19566831 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
382 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
19566896 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
447 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCC
* * * *
19566961 TAAACCCACCTACCACCCTCTCGATCCACGGCTTGCGTATC-CTGTCTCTCTGGCCGGCGTAGTG
512 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTC-ATCTCTCTGGCCGACGTAGTG
* *
19567025 CCCGCCCGCCCGTCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCAGACGGAGTTCATTCCCAGTC
576 CCCG--C-CCCG--C-CC-GCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
** * *
19567090 TAAGATTGGACCGGACCGAGGGTTGCAGCAGCA
634 TAAGATCAGACC-GAACGAGGGTTGCGGCAGCA
19567123 CATGCTGGGC
Statistics
Matches: 7315, Mismatches: 1648, Indels: 1624
0.69 0.16 0.15
Matches are distributed among these distances:
850 2 0.00
851 85 0.01
852 6 0.00
853 11 0.00
854 3 0.00
855 6 0.00
856 2 0.00
857 1 0.00
858 10 0.00
859 3 0.00
860 79 0.01
861 102 0.01
862 124 0.02
863 401 0.05
864 389 0.05
865 105 0.01
866 286 0.04
867 417 0.06
868 3 0.00
869 5 0.00
870 7 0.00
871 10 0.00
872 65 0.01
873 12 0.00
874 12 0.00
875 96 0.01
876 51 0.01
877 50 0.01
878 111 0.02
879 7 0.00
880 3 0.00
881 4 0.00
882 3 0.00
883 2 0.00
884 5 0.00
885 9 0.00
886 10 0.00
887 26 0.00
888 207 0.03
889 46 0.01
890 193 0.03
891 288 0.04
892 79 0.01
893 5 0.00
894 10 0.00
895 43 0.01
896 322 0.04
897 135 0.02
898 23 0.00
899 9 0.00
900 8 0.00
901 145 0.02
902 460 0.06
903 135 0.02
904 13 0.00
905 122 0.02
906 82 0.01
907 539 0.07
908 98 0.01
909 29 0.00
910 20 0.00
911 15 0.00
912 16 0.00
913 20 0.00
914 25 0.00
915 15 0.00
916 2 0.00
917 9 0.00
918 35 0.00
919 27 0.00
920 6 0.00
921 10 0.00
922 14 0.00
923 24 0.00
924 12 0.00
925 14 0.00
926 32 0.00
927 20 0.00
928 20 0.00
929 26 0.00
930 4 0.00
931 16 0.00
932 18 0.00
933 13 0.00
934 12 0.00
935 6 0.00
936 12 0.00
937 8 0.00
938 16 0.00
939 13 0.00
940 3 0.00
941 7 0.00
942 4 0.00
943 9 0.00
944 16 0.00
945 11 0.00
946 6 0.00
947 12 0.00
948 12 0.00
949 16 0.00
950 4 0.00
951 15 0.00
952 13 0.00
953 21 0.00
954 22 0.00
955 20 0.00
956 15 0.00
957 22 0.00
958 22 0.00
959 31 0.00
960 51 0.01
961 23 0.00
962 39 0.01
963 17 0.00
964 18 0.00
965 26 0.00
966 25 0.00
967 29 0.00
968 18 0.00
969 17 0.00
970 21 0.00
971 7 0.00
972 24 0.00
973 15 0.00
974 14 0.00
975 19 0.00
976 8 0.00
977 15 0.00
978 6 0.00
979 11 0.00
980 23 0.00
981 9 0.00
982 13 0.00
983 9 0.00
984 8 0.00
985 8 0.00
987 15 0.00
988 10 0.00
989 20 0.00
990 29 0.00
991 50 0.01
992 20 0.00
993 17 0.00
994 15 0.00
995 11 0.00
996 11 0.00
997 27 0.00
998 20 0.00
999 24 0.00
1000 33 0.00
1001 32 0.00
1002 5 0.00
1003 7 0.00
1004 15 0.00
1005 52 0.01
1006 10 0.00
1007 9 0.00
1008 6 0.00
1009 2 0.00
1010 1 0.00
1011 1 0.00
1012 2 0.00
1014 2 0.00
1015 1 0.00
1016 3 0.00
1017 5 0.00
1019 3 0.00
1020 4 0.00
1021 6 0.00
1022 10 0.00
1023 4 0.00
1024 247 0.03
1025 280 0.04
1026 309 0.04
1027 257 0.04
1028 222 0.03
1029 241 0.03
1030 361 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
GGGTTGGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACACTTTTTTCAAACGGTCACAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAA
GATTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAA
TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCTCATCTCTCTGGCCGACGTAGTGCCCGCCCCGC
CCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACG
AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCGATCGATCCCCGGCTTGCGCATCC
TGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTC
ATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGAC
AGCACATGCTGGGCTCGGGCATGTGCTGGTGGCGCATTTTTCTTCCCT
Found at i:19560365 original size:702 final size:696
Alignment explanation
Indices: 19558992--19560439 Score: 2074
Period size: 702 Copynumber: 2.1 Consensus size: 696
19558982 AGCGTCGCAC
* * * * * * *
19558992 GCTTATTTCGTGGGTTGACTTAGTCATACGGAGTTCATTCCCAGTCTAAGATCGGACTATATCGA
1 GCTTATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGA
* * * * *
19559057 GGGTTGTGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTTGCTGGGACAC
66 GGGTTATGACAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCTCGGACA-
* **
19559122 CATCATCGGAGAACCTGACCGACGACATTGGGGTTCCGATGATCGGCGGGGTCGGGGGGTTGTGC
130 CATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGACAATCGGCGGGGTCGGGGGGTTGTGC
**
19559187 GCACATGATGTGCGAAGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACC
195 GCACATGATGTGCGAAGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACC
* * * * *
19559252 TCGAGAACTCACACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGGCAGTAGCCATTAA
260 TCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAATAGCCATTAA
* * * *
19559317 AGTGTTTGAAATGAGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
325 AGTGTCTAAAATGAGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACCTAGAGTTTTTAGC
* *
19559382 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGCCAAAACTC
390 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCAGGTTTGGGCCAAAACTC
*
19559447 CTTCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
455 CTTCGAAAAAATTTTAAAAAATCCAGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* *
19559512 GAGTCGTCTTGCCATGAAATTTCACGTGAAGGCTTAAGGCACCATTGTGTGAATTTACAAGCCAT
520 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCAT
* * **
19559577 GAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
585 AAAAATGGCAATCGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *
19559642 ACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCTACCCGCCT
650 ACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-ACCCG-CT
* *
19559694 GCTTGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGACCG
1 GCTTATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCG
* * * *
19559758 AGGGTTATCGGCAGCACATGCTAGGCTC-GATCATGTGGTGGTGCCGTATTTTTCTTCG-TCGGA
65 AGGGTTAT-GACAGCACATGCTAGGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGCTCGGA
* * * * *
19559821 GCA-A-CGCCGGAGAACTTGATCGGC-AGCATTGGGGTTCCGACAATCGGGGGGGTCAGAGGGGG
128 -CACATCACCGGAGAACCTGACCGACGA-CATTGGGGTTCCGACAATCGGCGGGGTC-G-GGGGG
* * *
19559883 -TGTGTGCACATGATGTGCGAAGGGTGCTGGCACTT-GCCCTTATATTGTCCCCCTATCCCTCAT
189 TTGTGCGCACATGATGTGCGAAGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCAC
*
19559946 CAAACCTCGAGAACTCAAACCCCCTTAAA-ACGTATTTGAGATTTTACAGGTTTCCTGCCAATAG
254 CAAACCTCGAGAACTCAAACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTCCTGCCAATAG
* * *
19560010 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACCTAGAGT
318 CCATTAAAGTGTCTAAAATGAGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACCTAGAGT
* *
19560075 TTTTTGGTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCAGGTTTGGGGC
383 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCAGGTTT-GGGC
* * *
19560140 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGTAAAATGTTTCAAAAATCGTGAAAA
447 CAAAACTCCTT-CGAAAAAATTTTAAAAAATCCAGAACCATAAAAAGTTTCAAAAATCATGAAAA
* *
19560205 ATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
511 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTT
* *
19560270 ACAAGCCATAAAAATGGCAATGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
576 ACAAGCCATAAAAATGGCAATCGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
19560335 TATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCT
641 TATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCT
* *
19560391 -C--CTTTCGTCGGTTGGCTTAGGCATATGGAGTTCTTTCCCAGTCTAAGAT
1 GCTTATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT
19560440 TGGAGTGAAC
Statistics
Matches: 670, Mismatches: 66, Indels: 28
0.88 0.09 0.04
Matches are distributed among these distances:
694 46 0.07
696 1 0.00
697 2 0.00
698 5 0.01
699 4 0.01
700 237 0.35
701 50 0.07
702 283 0.42
703 42 0.06
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (696 bp):
GCTTATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGA
GGGTTATGACAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCTCGGACAC
ATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGACAATCGGCGGGGTCGGGGGGTTGTGCG
CACATGATGTGCGAAGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCT
CGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAATAGCCATTAAA
GTGTCTAAAATGAGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACCTAGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCAGGTTTGGGCCAAAACTCC
TTCGAAAAAATTTTAAAAAATCCAGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATA
AAAATGGCAATCGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCT
Found at i:19560934 original size:26 final size:26
Alignment explanation
Indices: 19560898--19560958 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
19560888 GTTGACTTAG
*
19560898 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19560924 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19560950 G-AT-CAGAGT
1 GCATACAGAGT
19560959 AGACCGAGGG
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
24 6 0.18
25 2 0.06
26 26 0.76
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19562702 original size:26 final size:26
Alignment explanation
Indices: 19562672--19562724 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19562662 GTTGACTTAG
19562672 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19562698 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19562724 G
1 G
19562725 ATAGACCGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19562949 original size:11 final size:11
Alignment explanation
Indices: 19562935--19562967 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
19562925 ATCGGGGCAC
19562935 CATCGTCGGAG
1 CATCGTCGGAG
19562946 CATCGTCGGAG
1 CATCGTCGGAG
19562957 CATCGTCGGAG
1 CATCGTCGGAG
19562968 AACCTGACCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:19562956 original size:131 final size:130
Alignment explanation
Indices: 19562699--19562939 Score: 356
Period size: 131 Copynumber: 1.8 Consensus size: 130
19562689 CCAGTCTAAG
* * *
19562699 CATACGGAGTTCATTCCCAGTCTAAGATAGACCGGATCGAGGGCTGCGACAGCACATGATGGGCT
1 CATACGGAGTTCATTCCCAGTCTAAGATAGACCAGACCGAGGGCTACGACAGCACATGATGGGCT
* *
19562764 CGAGCATGTGCCGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAAAGCATCGCCGGAGAAC
66 CGAGCATGTGCCGGTGCCCCATTTTTCTTCATCGGGGCACCATCGCCAAAGCATCGCCGGAGAAC
* * * * *
19562829 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGATAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGAT-AGACCAGACCGAGGGCTACGACAGCACATGATGGGC
* * *
19562894 TTGTGCATGTGTCGGTGCCCCATTTTTCTTCATCGGGGCACCATCG
65 TCGAGCATGTGCCGGTGCCCCATTTTTCTTCATCGGGGCACCATCG
19562940 TCGGAGCATC
Statistics
Matches: 97, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
130 28 0.29
131 69 0.71
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (130 bp):
CATACGGAGTTCATTCCCAGTCTAAGATAGACCAGACCGAGGGCTACGACAGCACATGATGGGCT
CGAGCATGTGCCGGTGCCCCATTTTTCTTCATCGGGGCACCATCGCCAAAGCATCGCCGGAGAAC
Found at i:19564582 original size:26 final size:26
Alignment explanation
Indices: 19564553--19564605 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19564543 GTTGACTTAG
19564553 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19564579 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19564605 G
1 G
19564606 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19565453 original size:26 final size:26
Alignment explanation
Indices: 19565417--19565467 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19565407 TTGACTTAGG
19565417 CATACGGAGTTCACTCCCAGTCTAAC
1 CATACGGAGTTCACTCCCAGTCTAAC
*
19565443 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCACTCCCAGTCTAA
19565468 GATCCAACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCACTCCCAGTCTAAC
Found at i:19566359 original size:26 final size:26
Alignment explanation
Indices: 19566323--19566375 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19566313 GTTGACTTAG
*
19566323 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGGCTAA
* *
19566349 GCATATGGAGTTCATTCCCAGGCTAA
1 GCATACGGAGTTCATTACCAGGCTAA
19566375 G
1 G
19566376 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGGCTAA
Found at i:19567731 original size:719 final size:713
Alignment explanation
Indices: 19566355--19568450 Score: 3025
Period size: 719 Copynumber: 3.0 Consensus size: 713
19566345 CTAAGCATAT
* * * * * *
19566355 GGAGTTCATTCCCAGGCTAAGATCGGATCGAACCAAGGGTTGCGGCAGCACATGCTGGGC-TCGA
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTTAG-
* * **
19566419 GCATGTGCTGGTGCCGAATTTTTCTTCGTCGGGGTACCATCGCCCGGAGCATCGCCGGAGAACCT
65 GCATGTGCTGGTGCCGAATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATTACCGGAGAACCT
* * * *
19566484 GACCGACGGCATTGAGGTTCCGCGATCGAGGGGCTGGGGGGTGGTGCGCACATGATTTGCCATGG
129 GACCGACGGCATTGGGGTTCCGCGATCGAGGGGCCGGGGGGT-GTGCGCACATGATGTGCGATGG
19566549 GTGCTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGTACTCACA-CCCCT
193 GTGCTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGTACTCACACCCCCT
*
19566613 TAAAGAGTATTTGAGATTTTACAGGTTTGCTGTCTGTAGCCATTAAAGTGTCTGAAATGCGGACA
258 TAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGCGGACA
*
19566678 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCATGTTTTTAGCTGAATTTTTTTTGTGCAAG
323 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCATGTTTTTAGCTGAA-TTTTTTTGTGCATG
19566743 CCAAAAAAAAATACAAGGATCACGTTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTT
387 CCAAAAAAAAATACAAGGATCACG-TCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAATTT
*
19566807 TAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
450 TAAAACATCTCGAACC-T-AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
19566872 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
513 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
19566937 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTCTCGATCCACGGCTTGCGTATC
578 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
19567002 CTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCTGCTCGTTTCGTCGGTTGGCTTAG
643 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
19567067 GCAGAC
708 GCAGAC
*
19567073 GGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTTAGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTTAGG
* * * * *
19567138 CATGTGCTGGGGCAGCATTTTTCTTCG-CTAGGGCACCATCGTCGGAGCATTATCGGAGAACCTG
66 CATGTGCTGGTGCCGAATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATTACCGGAGAACCTG
* ** * *
19567202 ATCGGTGGCGTTGGGGTTCCGACGATCAGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGGTGG
130 ACCGACGGCATTGGGGTTCCG-CGATC-GAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
19567267 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGTACTCACACCCCC
193 GTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGTACTCACACCCCC
19567332 TTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGCGGAC
257 TTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGCGGAC
19567397 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCATGTTTTTAGCTGAATTTTTTTGTGCATG
322 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCATGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
19567462 CCAAAAAAAAATTCAACGATCACGTCTACCAATTTTGGGGCCAAAACTCCTTCCGAAAGAATTTT
387 CCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA-AATTTT
* *
19567527 AAAACATCTCGAAACCGTAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
451 AAAACATCTCG-AACC-TAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
19567592 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGC
514 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
19567657 ATGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGTGCATCC
579 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
** * * *
19567722 CGTCTCTCTGGCTAGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGG
644 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
*
19567787 CATAC
709 CAGAC
* * * * * * **
19567792 GGAGTTCATTACCAGTCTAAGATCGGATCAGGACTGAGGGTTGCCGTAGCACATGCTAGGCTCGG
1 GGAGTTCATTCCCAGTCTAAGATCGGA-CCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTTAG
* *
19567857 GCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA-TAGCCGGAGAACCT
65 GCATGTGCTGGTGCCGAATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTA-CCGGAGAACCT
* *
19567921 GACCGACGGCATTGGGGTTCTGGCGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGTGAT
129 GACCGACGGCATTGGGGTTC-CGCGATC-GAGGGGCC-GGGGGGTGTGCGCACATGATGTGCGAT
*
19567986 GGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGA-TAAGC-CACAC
191 GGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGT-A-CTCACAC
* * *
19568049 CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG-
253 CCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGC
* *
19568113 GCGACACTTTTTTCAAATGGACACAAAATCTTATACACTTCGA-GTTTTTAGCTGAATTTTTTTG
318 G-GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-ATGTTTTTAGCTGAATTTTTTTG
* *
19568177 TGTATG-C-GAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA--CC--CC-----
381 TGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
19568231 ---TT----C--C-C--A-CAAAAAGTGTCGAAAATGGTGAAAAATAGAAAACAAGTCGTCTTGC
446 ATTTTAAAACATCTCGAACCTAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
19568283 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
511 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* ** * *
19568348 GGCATGCAAAAATAAAAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTACGCA
576 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
19568413 TCCCGTCTCTCTGGCCGACGTAGAGCCCGCCCGCCCGT
641 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGT
19568451 TCGTTTCGTC
Statistics
Matches: 1256, Mismatches: 104, Indels: 60
0.88 0.07 0.04
Matches are distributed among these distances:
694 192 0.15
695 1 0.00
696 1 0.00
699 1 0.00
700 1 0.00
702 1 0.00
706 2 0.00
715 2 0.00
717 38 0.03
718 148 0.12
719 420 0.33
720 239 0.19
721 208 0.17
722 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (713 bp):
GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTTAGG
CATGTGCTGGTGCCGAATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTACCGGAGAACCTGA
CCGACGGCATTGGGGTTCCGCGATCGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGTACTCACACCCCCTTAA
AGAGTATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGCGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCATGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTAAAAC
ATCTCGAACCTAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAGAC
Found at i:19569507 original size:26 final size:26
Alignment explanation
Indices: 19569470--19569527 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
19569460 CGTGGGTTGA
19569470 CTAAGGCATACGGAGTTCATTCCCAGT
1 CTAA-GCATACGGAGTTCATTCCCAGT
19569497 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
19569523 CTAAG
1 CTAAG
19569528 ATCGGACTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 27 0.87
27 4 0.13
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:19570608 original size:888 final size:881
Alignment explanation
Indices: 19568630--19572012 Score: 4289
Period size: 901 Copynumber: 3.8 Consensus size: 881
19568620 GTTGACTTAG
* * * *
19568630 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAAGGTTATGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * **
19568695 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCAAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * **** *
19568760 ACCTGACCGACGGCGTTGGGGTTCCGGT-GATCGGGGGGCCGAG-GGGGGTG-T-TG-GTACTTG
131 ACCTGACCGACGGCATTGGGGTTCCGATCGACCGGGGGG-TGTGCGCACATGATGTGCG-A-TGG
* *
19568820 G-C-C--CTT--ATA-TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
193 GTCTCGACTTGGCTACTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAG
* * * * *
19568878 AGAATTTGAGATTTTACAGGTTTGCTGCAAGTAGCTACTAAAGTATCGTGAAATGGGGACACTTT
257 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATGGGGACACTTT
*
19568943 TTTCAAATGGTCACTAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTTGCATG-CAAA
321 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTTGCATGCCAAA
* * * *
19569007 AAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CTAAAACCTCTTCCAAAAAAATTTTAAAAA
385 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATC-CTTCCGAAAAAATTTTAAAAA
* * *
19569071 ATCCCAAACAGTAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTCGCCATGAAACT
449 ATCCCGAACAGCAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
19569136 TCACGTGAAGGCTTAAGGG-ACTATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGCA
514 TCACGTGAAGGCTTAAGGGAAC-ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* *
19569200 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCGGCTTGCGCATCCCGTCC
578 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
19569265 CTCTTGCCGGTGTAGTGCCCGCCCGT---CC-GCTCGTTTCGTTGGTTGGCTTAGGCATACGAAG
643 CTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAG
* * * * *** * **
19569326 TTCATTCTCAGTCTAAGATCGGA-CTGAACCGAGGGTTGTGGCAGCAAGATTGGCAGCACACAGA
708 TTCATTCCCAGTCTAAGATCGAACCAG-ATCGAGGGTTGCAACAGCAAGATCGGCAGCACGTAGA
* * * * *
19569390 GGGGGACCCAGTCGATCCCCGGCTTGGGCGTCCCGCCCCTCTGGTCGGTTGAGCGCCCGCACGCT
772 -GGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
*
19569455 CGTTTCGTGGGTTGACTAAGGCATACGGAGTTCATTCCCAGTCTAA
836 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19569501 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * *
19569566 TTGGGGCAAGTGCTGGTGCCGCATTTCTCTTTGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
19569631 ACCTGACCGGCGGCGTTGGGGTTCCG-GCGATCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
131 ACCTGACCGACGGCATTGGGGTTCCGATCGACCGGGGGGTGTGCGCACATGATGTGCGATGGGT-
* * *
19569695 CTGGTACTTTGGCCCTTATTTGGCCCCCTATTCCCTCATCAAACCTTCGAGAACTCACTCCTCCT
195 CTCG-AC-TTGG--C-TACTTGGCCCCCTA-TCCCTCATCAAACC-TCGAGAACTCACACC-CCT
*
19569760 TAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
252 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
19569825 TTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTCTATG
317 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTG-C-ATG
*
19569889 CCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTA
380 CCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
* * * * * *
19569954 AAAAATCCTGAACCGCAAAACTTTCAAAAATCTTCAAAAAATAGAAAACGAGTCATCTTGCCGTG
445 AAAAATCCCGAACAGCAAAAGTTTCAAAAATCGT-AAAAAATAGAAAACGAGTCGTCTTGCCATG
*
19570019 AAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCA
509 AAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * ***
19570084 TGCAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTCATGCATCCC
574 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
*
19570149 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATAC
639 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * **
19570214 GGAGTTCATTGCCAGTCTAAGATCGAACCAGATCGAGGTTTGCAACAGCAAGATCGATAGCACGT
704 GAAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTGCAACAGCAAGATCGGCAGCACGT
* ** * *
19570279 AGAGAGGGACCCAGCCAATCCATGGCTTGCGCATCCCGCCCCTCTGGCCGACTGACCGCCCGCAC
769 AGAG-GGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
19570344 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19570393 CCATACGGAGTTCA-TCTCGGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
** *
19570457 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * ** * *
19570522 ACCTAACCGGCGGCATTAAGGTTCCAGCAATCGAGGGGCCTGGGGGGTGTGTGCACATGATGTGT
131 ACCTGACCGACGGCATTGGGGTTCC-G--ATCGA----CC-GGGGGGTGTGCGCACATGATGTGC
* * * *
19570587 GATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
188 GATGGGT-CTCG-ACTTGG--C-TA-CTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19570652 CCGCCTTAAAGAACATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
247 CC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19570717 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTC
311 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTG
* **
19570782 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAAT
376 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
* *
19570847 TTTAAAAAATCCCGAACAGCAAAAAGTTTC-AAAATTGTGAAAAATAGAAAACGAGTCGTCTTGC
441 TTTAAAAAATCCCGAACAGC-AAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGC
*
19570911 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
505 CATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATT
** * *
19570976 GGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCA
570 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
19571041 TCCCGTCTCTCTTGGCCGTCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCT
635 TCCCGTCTCTC-TGGCCGGCGTAGT----GCCCGCCCGTCCGCCTGCTCGTTTCGTCGGTTGGCT
* ** * * *
19571106 T-GGCCATACGGAGTTCACACCCAGTCTAAGATTGAACCAGATCGAGGGTTGCAATAGCAGGATC
695 TAGG-CATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTGCAACAGCAAGATC
* * *
19571170 GGCAGCACGCATA-AGGGGACTCCA-CTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGGCT
759 GGCAGCACG--TAGAGGGGAC-CCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
19571233 AAGCGCCCGTACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTTCCAGTCTAA
821 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19571294 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
19571359 CTCGGGCATGTCCTGGTGCTGCATTTTTCGTCGTCCGGG---CA----C----CATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
19571413 ACCTGACCGACGGCATTGGCGTTCCGA-CGATCGGGGGGTGTGCGCACATGATGTGCGATGGGTA
131 ACCTGACCGACGGCATTGGGGTTCCGATCGACCGGGGGGTGTGCGCACATGATGTGCGATGGGT-
* * * *
19571477 CTCGTACTTGGCCCTTATATTGGCCCCCTATCCCCCTTCAAACCTCGAGAACTCACACCCCGTTG
195 CTCG-ACTTGG--C-TA-CTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTA
19571542 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
254 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * *
19571607 TTTCTCAAAAGGTCACAAAATCTTGTACACTTTGAGGTTTTAGCT-ATATTTTTTTGTGCATGCC
319 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTT-TGCATGCC
* * * * *
19571671 AACAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCGAAAACTCCTTCCGAAAAAATTTAAAA
382 AAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAA
** ** * *
19571736 AAATCCCGAATCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAT
447 AAATCCCGAA-CAGCAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
19571801 ACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
511 ACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * **
19571866 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACACCTTGCGCATCCCGT
576 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
19571931 TTCTCTGGCCGACGTAGTGCCCG--C--CCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGA
641 CTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGA
19571992 AGTTCATTCCCAGTCTAAGAT
706 AGTTCATTCCCAGTCTAAGAT
19572013 TGGACCGAAC
Statistics
Matches: 2217, Mismatches: 234, Indels: 118
0.86 0.09 0.05
Matches are distributed among these distances:
870 2 0.00
871 148 0.07
872 4 0.00
873 3 0.00
874 2 0.00
875 51 0.02
876 2 0.00
877 1 0.00
878 1 0.00
879 7 0.00
881 3 0.00
882 198 0.09
883 99 0.04
884 175 0.08
885 14 0.01
886 78 0.04
887 143 0.06
888 182 0.08
889 2 0.00
890 1 0.00
891 155 0.07
892 189 0.09
893 2 0.00
895 4 0.00
896 153 0.07
897 96 0.04
898 135 0.06
899 34 0.02
900 49 0.02
901 201 0.09
902 81 0.04
903 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (881 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGATCGACCGGGGGGTGTGCGCACATGATGTGCGATGGGTC
TCGACTTGGCTACTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGCATGCCAAAAAAAAT
ACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGA
ACAGCAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
GGCGTAGTGCCCGCCCGTCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCC
CAGTCTAAGATCGAACCAGATCGAGGGTTGCAACAGCAAGATCGGCAGCACGTAGAGGGGACCCA
GCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19571297 original size:26 final size:26
Alignment explanation
Indices: 19571268--19571320 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19571258 GTTAACTTAG
*
19571268 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19571294 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19571320 G
1 G
19571321 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19573771 original size:27 final size:25
Alignment explanation
Indices: 19573740--19573792 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 25
19573730 GGGTGACTAG
19573740 GCATACAGAGTTTCATTCCCAGTCTAA
1 GCATACAGAG-TTCA-TCCCAGTCTAA
**
19573767 GCATATGGAGTTCATCCCAGTCTAA
1 GCATACAGAGTTCATCCCAGTCTAA
19573792 G
1 G
19573793 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 12 0.50
26 4 0.17
27 8 0.33
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (25 bp):
GCATACAGAGTTCATCCCAGTCTAA
Found at i:19574203 original size:863 final size:879
Alignment explanation
Indices: 19572226--19575087 Score: 2877
Period size: 863 Copynumber: 3.2 Consensus size: 879
19572216 TCCCCCTTCG
**
19572226 AACCTCGAGAACTCACACCCTGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
1 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
19572291 TTAAAGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTT
66 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
19572356 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA-GATCATGTCTACCAAGTTTAGGGCCAA
131 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * **
19572420 AACTCCTTCCGAAAAAATTTAAAAAAATCCCGAATCGTAAAAAGTTTTGAAAATCGTGAAAAATA
196 AA-TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATA
* ** * *
19572485 GAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAGCGAACCATTGTATGAATTTACA
260 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTAAA
* * **
19572550 AGCCATAAAAATGGCATTGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCCACCACCTTAT
325 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAAT
* * * * ** * * *
19572615 CGATCCACGGCTTACGCATCCCGTCTCTCTAGCCGACGTAGTGCCTGCCTG-TCGGCCCGCCCGC
390 CGATCCACGACTTACGCATCCCGTCTCTCTGGCCGACATAGAGCCCACCCGCTC-GCCAGCCAGC
* * * * * * * *
19572679 TAGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTATATGATTAAGATCGGATCGGA
454 TCGTTTCATCGGATGGCATAGGCATACGAAGTTCATTCCCAG----T--CTAAGATCAGATCAGA
* * ** * ** * ** * *
19572744 CCGAGGGTTGCAGCAGCAAAATTGGCAAAACCCAGAG-GCGGACCCGACCGATC-CTCGGCTTGT
513 CCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGAG-GGACCCGGTCGATCGC-CAGCTTGC
* * * * * *
19572807 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTAATG-GGTTGACTTAGGCATAC
576 GCATCCCGCCTCTCTGGCCTGCTGAGCGCCCGAACACTCGTTTCATGCGG-TGACTTAGGCATAC
* * **
19572871 GGAGTTCATTCCCAGTCTAAG-AT-C--AG---A----C---C--AGATCAAC-G-A-TTA----
640 AGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAACAGAACCGAGGGT
* * * * ** ** * *
19572913 TG-G-TAGCAGATACTGGGCTCAGGCATGTGTTGGTGCCGTATTTTTCTTTGTAGGGGCACCATC
705 TGCGACAACACATGCTGGGCTCAGGCATGTACTGGTGCCACATTTTTCTTCGTCGGGGCACCATC
* * * * * ** ** *
19572976 GCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTACGGCGATCGGGGGGGCTAG-GG
770 ACCGGAGCATCATCGAAGAACCTGATCGACGGCATTGGGGTTCCGATGAT-AAGGGGGCCAGAGG
* * ** *
19573040 GGGTGTGC-G-CACATGATGTGTGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCC
834 GTGTGTGCAGACA-ACGA-CAG-GAT--G-G-T---A-TTGG--C----ACTGG----C-AT--C
*
19573103 TCATCA
875 GCAT-A
* *
19573109 AACCTCGAGAACTCACACCCCCTTAAGGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
1 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
19573174 TTAAAGTGTCTGAAATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACTCTTCGAGTTTT
66 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
19573239 TAGCTGAATTTTTTTATGCATGCCGAAAAAAATACAAGGATCACGTCTAACAAGTTTAGGGCCAA
131 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * *
19573304 AACTCCTTCTGAAAAAATTTTGAAAAATCTCGAACCGAAAAAAGTTTTAAAAATCGTGAAAAATA
196 AA-TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATA
*
19573369 GAAAACGAGTCGTCTTGCCATG-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAA
260 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTAAA
* *
19573433 AGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCCTAAACCCACCTACCACCCTA
325 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG-CCTAAACCCACCTACCACCCAA
* * * * *
19573498 TCGATCCACGACTTACGCATCCCGTCTCTCTGGTCGACGTAGAGCCCGCCC-ATCCGCCCGCCCA
389 TCGATCCACGACTTACGCATCCCGTCTCTCTGGCCGACATAGAGCCCACCCGCT-CGCCAG-CCA
** **
19573562 -CTCGTTTCATCGGATGGCATAGGCATACGAAGTTCATT-CCAGTCTAAGATGGGATTGGACCGA
452 GCTCGTTTCATCGGATGGCATAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGA
* * * * *
19573625 TGGTTGCGGCAGCAGGATTGGTAGCACGCAGA-AGGGACCCGCGTCGATC-CCTGGCTTGCGCAT
517 GGGTTACGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCG-GTCGATCGCC-AGCTTGCGCAT
* *
19573688 CCC-CC-CTCTGGGTCC-GGTGAGCGCCCGTAAACACTTG-TTCATG-GGTGAC-TAGGCATACA
580 CCCGCCTCTCT-GG-CCTGCTGAGCGCCCG--AACACTCGTTTCATGCGGTGACTTAGGCATACA
* * * *
19573747 GAGTTTCATTCCCAGTCTAAGCATATGGAGTTCA-TCCCAGTCTAAGATCGGACCAGGACCGAGG
641 GAG-TTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC--AACAGAACCGAGG
**
19573811 GTTGCGACAACACATGCTGGGCTCAGGCATGTGGTGGTGCCACATTTTT-TTCGTCGGGGCACCA
703 GTTGCGACAACACATGCTGGGCTCAGGCATGTACTGGTGCCACATTTTTCTTCGTCGGGGCACCA
* * ** * * *
19573875 TCACCGGAGCATCATCGGATAATTTGA-CTGACGGTATTGGGTTTCCGGTGATCAAGGGGGCCAG
768 TCACCGGAGCATCATCGAAGAACCTGATC-GACGGCATTGGGGTTCCGATGAT-AAGGGGGCCAG
*
19573939 AGGG-GTGTGC-G-C-AC-A-A-GAT-GT-TT-G-A-TGG-GT-GC-T-
831 AGGGTGTGTGCAGACAACGACAGGATGGTATTGGCACTGGCATCGCATA
* *
19573972 AACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCA
1 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
19574037 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATT-GATTTT
66 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTT
* *
19574101 TTAGCTGAATTTTTTTGTCCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
130 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
19574166 GAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAAT
195 -AAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAAT
*
19574231 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTAC
259 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTAA
*
19574296 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCAA
324 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAA
* * * * * * *
19574361 TCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCATCGTGCCCACCCGCTCGCCAGCCAGT
389 TCGATCCACGACTTACGCATCCCGTCTCTCTGGCCGACATAGAGCCCACCCGCTCGCCAGCCAGC
* * * *
19574426 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGG
454 TCGTTTCATCGGATGGCATAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGG
* * * * *
19574491 GTTATGGTAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTTGATCGCCAGCTTGCGCATCCCG
519 GTTACGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGGTCGATCGCCAGCTTGCGCATCCCG
* * * * * * * *
19574556 CCTTTCTGGCCTGCTTAGCGCCCGCACGCTCGTTTCGTGCGTTGACTTAGGCGTACGGAGTTCAT
584 CCTCTCTGGCCTGCTGAGCGCCCGAACACTCGTTTCATGCGGTGACTTAGGCATACAGAGTTCAT
* * * * *
19574621 TCCCAATCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAACTGAACCGAGGGTTGTGGCAGC
649 TCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAACAGAACCGAGGGTTGCGACAAC
* ** * ** *
19574686 ACATGCTGGGCTCGGGCATGTACTGGTGCCGTATTTTTCTTCGTCGGGTCACCATCGTCTGAGCA
714 ACATGCTGGGCTCAGGCATGTACTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCA
* ** * *
19574751 TCATCGAAGAACCTGATCGGCGGCATTGGGGTTCCGATGATTGGGGGGCCGGGGGGTGTGTGCAG
779 TCATCGAAGAACCTGATCGACGGCATTGGGGTTCCGATGATAAGGGGGCCAGAGGGTGTGTGCAG
*
19574816 ACATGACGTACGATGGGTGATGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCA
844 ACA--ACG-AC-A---G-GATGGTA-TTGG--C----ACTGG----C-AT--CGCAT-A
*
19574875 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
1 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
19574940 TTAAAGTGT-TCGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
66 TTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
19575004 TTAGCTGAATTTTTTTGTGCAGGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCGA
130 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-C
*
19575069 AAAATCCTTCCAAAAAAAT
194 AAAATCCTTCCGAAAAAAT
19575088 GGCATTGGCA
Statistics
Matches: 1683, Mismatches: 196, Indels: 180
0.82 0.10 0.09
Matches are distributed among these distances:
862 3 0.00
863 364 0.22
864 220 0.13
865 117 0.07
866 31 0.02
867 1 0.00
869 1 0.00
870 2 0.00
872 1 0.00
874 1 0.00
875 19 0.01
876 45 0.03
877 72 0.04
878 4 0.00
879 4 0.00
880 4 0.00
882 2 0.00
883 240 0.14
884 211 0.13
885 3 0.00
886 1 0.00
889 2 0.00
890 2 0.00
891 8 0.00
893 2 0.00
894 4 0.00
895 1 0.00
896 1 0.00
897 1 0.00
898 1 0.00
899 1 0.00
900 4 0.00
901 73 0.04
902 41 0.02
903 195 0.12
904 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (879 bp):
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTAAAA
GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATC
GATCCACGACTTACGCATCCCGTCTCTCTGGCCGACATAGAGCCCACCCGCTCGCCAGCCAGCTC
GTTTCATCGGATGGCATAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGT
TACGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGGTCGATCGCCAGCTTGCGCATCCCGCC
TCTCTGGCCTGCTGAGCGCCCGAACACTCGTTTCATGCGGTGACTTAGGCATACAGAGTTCATTC
CCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAACAGAACCGAGGGTTGCGACAACAC
ATGCTGGGCTCAGGCATGTACTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATC
ATCGAAGAACCTGATCGACGGCATTGGGGTTCCGATGATAAGGGGGCCAGAGGGTGTGTGCAGAC
AACGACAGGATGGTATTGGCACTGGCATCGCATA
Found at i:19574645 original size:26 final size:26
Alignment explanation
Indices: 19574609--19574658 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19574599 GACTTAGGCG
19574609 TACGGAGTTCATTCCCAATCTAAGCA
1 TACGGAGTTCATTCCCAATCTAAGCA
* *
19574635 TACGGAGTTCATTCTCAGTCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
19574659 ATCAACTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCA
Found at i:19575791 original size:770 final size:773
Alignment explanation
Indices: 19574303--19575858 Score: 2234
Period size: 770 Copynumber: 2.0 Consensus size: 773
19574293 TACAAGCCAT
** *
19574303 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCAATCGATCC
1 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCC
* * * *
19574368 ACGGCTTGCGCATCCTGTCTCTCTGGCCGGCATCGTGCCCACCCGCTCGCCAGCCAGTTCGTTTC
66 ACGGCTTGCACATCCCGTCTCTCTGGCCGGCATAGTG--C-CCCGCCCGCCA-CCAGTTCG-TTC
* * ** * **
19574433 ATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTATGG
126 A-C-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCCAAGATCAGACCAGACCAAGGGCTACCG
* * * **
19574498 TAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTTGATCGCCAGCTTGCGCATCCCGCCTTTCT
189 TAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCGCCAGCTTGCGCATCCCGCCCCTCT
** * * * * *
19574563 GGCCTGCTTAGCGCCCGCACGCTCGTTTCGTGCGTTGACTTAGGCGTACGGAGTTCATTCCCAAT
254 CACCGGCTGAGCACCCGCACGCTCGTTTCGTGCGTTGACTTAGGCATACAGAGTTCATTCCCAAT
* * * *
19574628 CTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAACTGAACCGAGGGTTGTGGCAGCACATGCT
319 CTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAACCGAACCGAGGGTTGCGGCAGCACATGCT
* ** ** *
19574693 GGGCTCGGGCATGTACTGGTGCCGTATTTTTCTTCGTCGGGTCACCATCGTCTGAGCATCATCGA
384 GGGCTCAGGCATGTACTGGTGCCACATTTTTCTTCACCGGGTCACCATCGTCGGAGCATCATCGA
* * * *
19574758 AGAACCTGATCGGCGGCATTGGGGTTCCGATGATTGGGGGGCCGGGGGGTGTGTGCAGACATGAC
449 AGAACCTGACCGACGGCATTGGGGTTCCGACGATGGGGGGGCCGGGGGGTGTGTGCAGACATGAC
*
19574823 GTACGATGGGTGATGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
514 GTACGATGGGTGATAGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
19574888 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTCGA
579 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTCGA
19574953 AATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
644 AATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
19575018 TTGTGCAGGC-CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCGAAAAATCCTTCCAA
709 TTGTGCAGGCAAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCAAAAAATCCTTCCAA
* * *
19575082 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGTCTAAACCTACCTACCACCCTATCGATCC
1 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCC
* * *
19575147 ACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTG-CCTGCCCG-C-CCATTTCG-TCA-GTT
66 ACGGCTTGCACATCCCGTCTCTCTGGCCGGCATAGTGCCCCGCCCGCCACCAGTTCGTTCACGTT
*
19575207 GGCTTAGGCATACGGAGTTCATTCCCAGTCCAAGATCAGACCAGACCAAGGGCTGCCGTAGCAGG
131 GGCTTAGGCATACGGAGTTCATTCCCAGTCCAAGATCAGACCAGACCAAGGGCTACCGTAGCAGG
* * * *
19575272 ATCGGCAGCACGTAGAGGGGGACCCGATCGATAC-CCGGCTTGCTCATCCCGCCCCTCTCATCGG
196 ATCGGCAGCACGCAGAGGGGGACCCGATCGAT-CGCCAGCTTGCGCATCCCGCCCCTCTCACCGG
* * *
19575336 CTGGGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
260 CTGAGCACCCGCACGCTCGTTTCGTGCGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGC
* * * * *
19575401 ATAAGGAGTTCATTCCCAGTTTAGGATCGGACCGGACCGAGTGTTGCGGCAGCACATGCTGGGCT
325 ATAAGGAGTTCATTCCCAGTCTAAGATC-AACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCT
* *
19575466 CAGGCATGTGCTGGTGTCACATTTTTCTTCACCGGGGT-ACCATCGTCGGAGCATCGA-CGAAGA
389 CAGGCATGTACTGGTGCCACATTTTTCTTCACC-GGGTCACCATCGTCGGAGCATC-ATCGAAGA
*
19575529 ACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGGCCGAAGGGGG-GTGTGC-GCACATGA
452 ACCTGACCGACGGCATTGGGGTTCCGACGAT-GGGGGGGCCG--GGGGGTGTGTGCAG-ACATGA
* * * * *
19575592 TGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTCTCCCTCATCAAACCTTGAGAAC
513 CGTACGATGGGTGATAGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
* * *
19575657 TTACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTG
578 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTCG
*
19575722 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
643 AAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
19575787 TTTGTGCAGGCAAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCAAAAAATCCTTCCA
708 TTTGTGCAGGCAAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCAAAAAATCCTTCCA
19575852 A
773 A
19575853 AAAAAT
1 AAAAAT
19575859 TTTGAAAAAA
Statistics
Matches: 694, Mismatches: 74, Indels: 26
0.87 0.09 0.03
Matches are distributed among these distances:
767 192 0.28
768 107 0.15
769 15 0.02
770 211 0.30
771 63 0.09
772 7 0.01
774 1 0.00
775 6 0.01
779 92 0.13
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.26
Consensus pattern (773 bp):
AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCC
ACGGCTTGCACATCCCGTCTCTCTGGCCGGCATAGTGCCCCGCCCGCCACCAGTTCGTTCACGTT
GGCTTAGGCATACGGAGTTCATTCCCAGTCCAAGATCAGACCAGACCAAGGGCTACCGTAGCAGG
ATCGGCAGCACGCAGAGGGGGACCCGATCGATCGCCAGCTTGCGCATCCCGCCCCTCTCACCGGC
TGAGCACCCGCACGCTCGTTTCGTGCGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCA
TAAGGAGTTCATTCCCAGTCTAAGATCAACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCA
GGCATGTACTGGTGCCACATTTTTCTTCACCGGGTCACCATCGTCGGAGCATCATCGAAGAACCT
GACCGACGGCATTGGGGTTCCGACGATGGGGGGGCCGGGGGGTGTGTGCAGACATGACGTACGAT
GGGTGATAGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTCGAAATGAGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
GGCAAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCAAAAAATCCTTCCAA
Found at i:19578057 original size:26 final size:26
Alignment explanation
Indices: 19578018--19578073 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
19578008 TGGGTTGACT
*
19578018 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGCC
*
19578044 TAAGCATACGGAGTTCATTCCCAGCC
1 TAAGCATACAGAGTTCATTCCCAGCC
19578070 TAAG
1 TAAG
19578074 ATCGGATCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGCC
Found at i:19578950 original size:902 final size:895
Alignment explanation
Indices: 19577245--19584201 Score: 8231
Period size: 902 Copynumber: 7.7 Consensus size: 895
19577235 CACTTTTTTT
* * * * * *
19577245 TCGTCGGAGAATCGCCGGAGAACCTGACC-AGTGGCATAGGGGTTCCGACGATCGAGGGAGCCGA
1 TCGTCGGAGCATC-TCGGAGAACCTGACCGA-CGGCATTGGGGTTTCGGCGATCG-GGG-GCCG-
* *
19577309 CAGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
61 --GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
19577374 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCT
124 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
19577439 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
189 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
19577504 CGAGTTTGGTAACTGAATTTTTTTGTGCATGCCCAAAAAAAAATACAAGGACCACGTTAT-TACC
254 CGAGTTT-TTAGCTGAATTTTTTTGTGCATG-CC-AACAAAAATACAAGGATCAC---ATCTACC
* * *
19577568 GATGTTTGGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAATCCGGAA-CATGCAAAAAAGTT
313 -AAGTTT-GGGGCCAAAAGTCCTTCCGAAAAAATTTTAAAAAATCC-GAACCAT---AAAAAGTT
* * * *
19577631 TCAAAAATCATGATGAAAAATGGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAA
372 TTAAAAATC--G-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
**
19577696 GGGACCATTGTATGGAATTTAACAAGCCAT-AAAA-GGCATTGGCATGCCAAGAAATATGAAGAT
434 GGGACCATTGTAT-GAATTT-ACAAGCCATAAAAATGGCATTGGCA--CGTAGAAATATGAAGAT
* * *
19577759 GTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACAA
495 GTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGA
**
19577824 AGTGCCCG----G-CCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
560 AGTGCCCGCCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * * *
19577884 CTAAGATCTGATCGAACCGAGGTTTGTGGCAGCAGGATC-AGCAGCATGTAGAAGGGGACCCGA-
625 CTAAGATCAGACCAAACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGAT
* * * * * * *
19577947 CTGATCCCCGGCTTGTGCATCCCACCCCTTTGGCCGGCTGAGGGACCGCACGCTCGTTTTGTGGG
689 C-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGT
* * *
19578012 TTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATC
753 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
19578077 GGATCGGAACGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCT
818 GGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
19578142 TCATCGGGGCACCA
883 TCA-CGGGGCACCA
* * * * *
19578156 TTGCCGGAGCATCTCTGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCTAGGTGGCCGGG
1 TCGTCGGAGCATCTC-GGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATC--GGGGGCC-GG
* *
19578221 GGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGACCCCCTATCCCT
62 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
19578285 CAACAAACCTCAAGAGCTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
127 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
19578350 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTTGA
192 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
19578415 GTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAGATACAAGGATCA-AGTCTACC-AGTTTG
257 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-ATACAAGGATCACA-TCTACCAAGTTTG
* * * *
19578477 GGGCCAAAAGTCCTTCCGAAAAAATTTAAAAAAATCTCGAACCATAAAAAGTTTTGAAATTCATG
320 GGGCCAAAAGTCCTTCCGAAAAAATTTTAAAAAATC-CGAACCATAAAAAGTTTTAAAAATCGTG
* * *
19578542 AAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATAA
384 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
19578607 ATTTACAAGCCATAAAAATGGAATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
449 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * ** *
19578672 ACCCTATCGATCCATGGCTTGCGCATCTCGTCTCTCTGGCTGGGGTAGTGCCCGCTCACCCGCCC
514 ACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCCG--C-CCCGCCC
* * **
19578737 GCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCTGACCGGA
576 GCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAA
** * *
19578802 CCGAGGGTTGCAACAGCAGGATCGACAGTACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
641 CCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * * *
19578867 ATCCCGCCCCTCTGGCCGGCTGAACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGTATACGGA
706 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACGGA
* * * *
19578932 GTTCATTCCCAATCTAAGCATACGGAGTTCATTTCGAGTCTAAGATCAGATCGAACCGGACCGAG
771 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-G---G-ACCAGACCGAG
* * *
19578997 GGTTGCGGCAGCACATGCTGGGCTCGGCCATGTGCTGGTGCCACATTTTTCTTCACTGGGGCACC
831 GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC-GGGGCACC
19579062 A
895 A
* * * * *
19579063 TCGTCGGAGAATCACCGGAGAACCTGACCGGCGGCATTAGGGTTTTGGCGAT-------C-GGGG
1 TCGTCGGAGCATC-TCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGCCGGGGG
* * *
19579120 GTGTGCACACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCAT
65 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
19579185 CAAACCTCAAGAACTCACACCCCC-TAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGC
130 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * * *
19579249 CATTAAAGTGTCTGAAATGGGG-CACCTATTTCAAATGGTCCCAAAATATTGTACACTTCGAGTT
195 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
19579313 TTTAGCTG-ATTTGTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGC
260 TTTAGCTGAATTT-TTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGC
* ** *
19579377 CAAAACG-CCTTCCCAAAAAATTTTAAAAAATACCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
324 CAAAA-GTCCTTCCGAAAAAATTTTAAAAAAT-CCGAACCATAAAAAGTTTTAAAAATCGTGAAA
* * *
19579441 AATAAAAAATGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
387 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
19579506 TACAAGCCATAAAAATGGCATTGGCACGTGGAAATATAAAGATGTGCCTAAACCCA-CTACCACC
452 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
19579570 CTATCAATTAACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGAAGTGCTCAC-CCGTCCGCCCGT
517 CTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGC-C-CGCC--CCGCCCG-
* * * *
19579634 CC-ACTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCTA-TCTAAGATCAGACCGAA
577 CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCAAA
* * * * * *
19579697 CTGAGGGTTACGGCAGCAGGATCGACAGCATGCAGAGGGGGACCTGACCGATACCCGGCTTGCGC
641 CCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* ** ***
19579762 ATCCTGCCCCTCTGGCTAGCTGAGCGCCTATACGCTCGTTTCGTGGTTTGACTTAGGCATACGGA
706 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACGGA
* * *
19579827 GTTCATTCCCAGTCTAAGCATACGAAGTTCATTACCAGTCTAAGATCGGACCAGACCGAGGCTTA
771 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTA
* * ** * * * ** *
19579892 CGGTAGCACATTCAAGGCTCGGGCATGTGCTAGTGCTGCATTTTTCTTTGACATGGCGCCA
836 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCACGGGGCACCA
* * **
19579953 TCGTCGGAGCATCGTCGGAGAACCTAACC-AGCGGCATTGAGGTTTCGGCGATCGGGGGGGTTGG
1 TCGTCGGAGCATC-TCGGAGAACCTGACCGA-CGGCATTGGGGTTTCGGCGATC--GGGGGCCGG
19580017 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
62 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
19580082 CATCAAACCTCGAGAACTCACACGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
127 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
19580147 AGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTGACAAAATCTTGTACACTTCGA
192 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * *
19580212 GTTTCTAGCTGAATGTTTTTGTGCAAGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGG
257 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGG
* * * * * *
19580277 GCCATAACTTCTTTCGAAAAAATTTTAAAAAATCCTGAATCATAAAAAGTTTTGAAAATCGTGAA
322 GCCAAAAGTCCTTCCGAAAAAATTTTAAAAAATCC-GAACCATAAAAAGTTTTAAAAATCGTGAA
* ** *
19580342 AAATAAAAAACGAGTCGTCTTAACATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
386 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * *
19580407 TTACAAGCCATAAAAATGGCATTGGTATGCACAAATATGAAGATGTGCCTAAACCCACCTACCAC
451 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * *
19580472 CCTATCGATTCACGGCTTGCGCATCTCGTCTCTCTGGTC-A-G-TGTAG--TG-CCC-CCCGCTT
516 CCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGT-GCCCGCCCCGCCCGCCT
* * * * *
19580530 GCTTGTTTCGTCGGTTGGCTTAGGCCTACGCAGTTCATTACCAGTCTAAGATCAGACCAAACTGA
580 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGA
** * *
19580595 GGGTTGCGATAGCAGGATCGACAGCACGCAGAGTGGGACCCGATCGATCCCCTGCTTGCGCATCC
645 GGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
* * ** * *
19580660 CACCCCTTTGGCCGGCTGAGCATCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACGAAGCTC
710 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTC
** * * *
19580725 ATTCGTAGTCTAAGTATACGGAGTTCATTCCCAGTCTTAGATCAGACCAGACCGAGGGTTACGGC
775 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGC
* * * ** * *
19580790 AACACATGCTGGGCTTGGGCAAGTGCTGGTGCTACATTTTTCTTCGCCAGGGCACCA
840 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-ACGGGGCACCA
* *
19580847 ---TC---G----TCGGAGAACCTGACCGACGGCATTGGGGTTTCGGTGATGGCGGAGGCCGGGG
1 TCGTCGGAGCATCTCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGAT--CGGGGGCCGGGG
* *
19580902 GGTGTGCACACATGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCA
64 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* ** *
19580967 TCAAACCTCAAGAGCTCACACCCCCCAAAAGAGCATTTGAGATTTTACAGGATTGCTGCCAGTAG
129 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
19581032 CCATTAAAGTGTCTGAAATGGGG-CACCTTTTTCAAATGGTCCCAAAATATTGTACACTTCGAGT
194 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
19581096 TTTTAGCTGAATTGTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGC
259 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGC
* * *
19581161 CAAAACG-CCTTCCCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
324 CAAAA-GTCCTTCCGAAAAAATTTTAAAAAAT-CCGAACCATAAAAAGTTTTAAAAATCGTGAAA
* *
19581225 AATAGAAAATGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
387 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
19581290 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACC
452 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* *
19581355 CTATCAATTAACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCCGCCCGCCCGCCCGCC
517 CTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCCG--C-CCCGCCCGCC
* * *
19581420 TGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCAATCCCAGTATAAGCATACGGAGTTCAT
579 TGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A-
* * ** * * *
19581485 TCCTAGTCTAAAATCAGACCGGATCGAGGGTTACGGCAGCAGGATTGGTAGCACGCAAAAGAGGA
636 --C----C----A--A-A-C----CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGA
* * * * *
19581550 CCCGATCGATCCTCGACTTACGCATCCCGCCCCTCTGGCCAGTTGAGCGCCCGCACGCTCGTTTC
683 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
** *
19581615 GTGCG-TTGACTTAGGCATACAAAGTTCATTCCCAGTCTACGCATACGGAGTTCATTCCCAGTCT
748 GTG-GTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* ** * * *
19581679 AAGATCGAACTGGACTGAGGGGTTTA--GCAGCACATGCTGGCCTCGGGCATGTGCTAGTGCCGC
812 AAGATCGGACCAGACCGA-GGG-TTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
**
19581742 ATTTTTCTTTGTCGGGGCACCA
875 ATTTTTC-TTCACGGGGCACCA
** * * * * **
19581764 TCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTCCGGCAATCGGGGGGCTAGGG
1 TCGTCGGAGCATC-TCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATC-GGGGGCCGGGG
* *
19581829 GGTGTGCGCACGTGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
64 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
** * *
19581894 TCAAACCTCGGGAACTCACACCCCCTTAACGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAG
129 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
19581959 ACATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTTGAGT
194 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * ** *
19582024 TTTTAACTGAATTTTTTTGTGCATGCCAAAAAAAATACAAAGATCATGTCTACCAAGTTTAGGGC
259 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGC
* * * * *
19582089 TAAAA-TCCTTGCGAAAAAATTTT-AAAAATCTTGAATCATAAAAAGTTTTGAAAATCGTTGAAA
324 CAAAAGTCCTTCCGAAAAAATTTTAAAAAATC-CGAACCATAAAAAGTTTTAAAAATCG-TGAAA
*
19582152 AATAGAAAACGGGTCCGTCTTG-CATGAAAC-TCA-G-G-AGGCTTAAGGGACCATTGTATGAAT
387 AATAGAAAACGAGT-CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * *
19582212 TTACGAGCCATAAAAATGGCATTGGCATGCA-CAATATGAAGATGTGCCTAAACCCACCTACCCA
451 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA-CCA
* * * * ** * **
19582276 CCCTATCTATTCACGG-TTGCACATCTCGTCTCTCTGGTCGGTGTAGTGCTCCG-CCCG--C-TT
515 CCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGC-CCGCCCCGCCCGCC
* * * *
19582336 TGCTCGTTTCCGTCGG-TGGCTTAGGCCTACGCAGTTCATTACC-GTCTAAGATCAGACCAAACT
579 TGCTCGTTT-CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACC
** * * * *
19582399 GAGGGTTGCGATAGCAGGATCGACAACACGCAGAGTGGGACCCGATCGATCCCCGACTTGCGCTT
643 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT
* ** * *
19582464 CCCGCCCCTTTGGCCGGCTGAGCATCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACGAAGC
708 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACGGAGT
** * * * *
19582529 TCATTCGTAGTCTAAGCATACGAAGTTCATTCCCAGTCTTAGATCGGACCAGATCGAGGGTTGCG
773 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACG
* * * * ** *
19582594 GCAACACATGCTGGGCTTGAGCAAGTGCTGGTGCTACATTTTTCTTCGCCGGGGCACCA
838 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-ACGGGGCACCA
* * * *
19582653 ---TC---G---C-CGGAGAACTTGACCGATGGCATTGAGGTTTCGGTGATGGCGGGGGCCGGGG
1 TCGTCGGAGCATCTCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGAT--CGGGGGCCGGGG
* *
19582708 GGTGTGCGCACATGATATGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCA
64 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
19582773 TCAAACCTCAAGAACTCACACCCCCCTAAAGAGCATTTGAGATTTTACATGTTTGCTGCAAGTAG
129 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * *
19582838 CCATTAAAGTGTCTGAAATGGGG-CACCTTTTTCAAATGGTCCCAAAATATTGTACACTTTGAGT
194 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * *
19582902 TTTTAGTTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGAGC
259 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGC
* *
19582967 CAAAACG-CCTTCCCAAAAAATTTTAAAAAATCTCGAACCGA-AAAAAGTTTCAAAAATCGTGAA
324 CAAAA-GTCCTTCCGAAAAAATTTTAAAAAATC-CGAACC-ATAAAAAGTTTTAAAAATCGTGAA
* *
19583030 AAATAGAAAATGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
386 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * *
19583095 TTACAAGCCATAAAAATGGCAGTCGCATGTAGAAATATAAAGATGTGCCTAAACCCACCTACCAC
451 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
19583160 CCTAAT-AATTAACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTG-CCGGCCCGCCCGTCC
516 CCT-ATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCCGCCCCGCCCG-CC
* *
19583223 -GCCCATTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCTA-TCTAAGATCAGACCA
579 TG--C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCA
* * *
19583286 AACTGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
639 AACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGC
* * *** *
19583351 GCATCCTGCCCCTCTGGCCAGCTGAGCGCCTATACGCTCGTTTCATGGTTTGACTTAGGCATACG
704 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACG
* * * * *
19583416 GAGTTCATTCCCAGTCTAAGATCAGAC-CAGTTCATTACCAGTCTAAGATCAGACCAGACCAAGG
769 GAGTTCATTCCCAGTCTAAG--CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
* * * * * * * * ** *
19583480 CTTACGGTAGCACATTCAGGACTTGGGCATGTGCTGGTGCCGTATTTTTCTTTGACATGGCGCCA
832 GTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCACGGGGCACCA
* * * *
19583545 TCGTCGAAGCATCGTCGGAGAACCTGACCGGCGGCATTGAGGTTTCGGCGATCGGGGG-GGTTGA
1 TCGTCGGAGCATC-TCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGCCG--G-
* *
19583609 GGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCT
62 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
19583674 CATCAAACCTCGAGAACTCACACCACCTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCAGT
127 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * * * * *
19583739 ACCCATTAATGTGCCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGG
192 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * ** * *
19583804 GTTTTTGGCTGAATTTTTTTGTCCATGCCAACAAAAATAAAAGAATCATGTCTACAAAGTTTGGA
257 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGG
* * * * *
19583869 GCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCATGAA
322 GCCAAAAGTCCTTCCGAAAAAATTTTAAAAAAT-CCGAACCATAAAAAGTTTTAAAAATCGTGAA
19583934 AAAT-GAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
386 AAATAG-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
19583998 TTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGCGCCTAAACCCACCTACCA
450 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
19584063 CCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCG-CCCGCCCG-CT
515 CCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCCGCCCCGCCCGCCT
* * * *
19584126 -CAT--TTT-GTTGATTGGCTTAGGCATCCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
580 GC-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCG
19584187 AGGGTTGCGGCAGCA
644 AGGGTTGCGGCAGCA
19584202 CATGCTGGGC
Statistics
Matches: 5201, Mismatches: 658, Indels: 389
0.83 0.11 0.06
Matches are distributed among these distances:
878 132 0.03
879 191 0.04
880 33 0.01
881 2 0.00
882 304 0.06
883 259 0.05
884 58 0.01
885 4 0.00
886 3 0.00
887 2 0.00
888 8 0.00
889 205 0.04
890 132 0.03
891 200 0.04
892 78 0.01
893 13 0.00
894 364 0.07
895 356 0.07
896 415 0.08
897 55 0.01
898 3 0.00
899 15 0.00
900 118 0.02
901 89 0.02
902 470 0.09
903 230 0.04
904 316 0.06
905 19 0.00
906 4 0.00
907 131 0.03
908 152 0.03
909 38 0.01
910 1 0.00
911 47 0.01
912 5 0.00
913 3 0.00
914 2 0.00
915 6 0.00
916 32 0.01
917 205 0.04
918 6 0.00
919 7 0.00
920 1 0.00
922 54 0.01
923 74 0.01
924 1 0.00
925 2 0.00
926 31 0.01
927 187 0.04
928 138 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
TCGTCGGAGCATCTCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGCCGGGGGG
TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCA
AAAGTCCTTCCGAAAAAATTTTAAAAAATCCGAACCATAAAAAGTTTTAAAAATCGTGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCCGCCCCGCCCGCCTGCTCGT
TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTG
CGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCC
TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCC
AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACA
TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACGGGGCACCA
Found at i:19579848 original size:26 final size:26
Alignment explanation
Indices: 19579818--19579870 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19579808 TTTGACTTAG
* *
19579818 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
19579844 GCATACGAAGTTCATTACCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
19579870 G
1 G
19579871 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAGTCTAA
Found at i:19582566 original size:26 final size:26
Alignment explanation
Indices: 19582518--19582567 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
19582508 TTTGACTTAG
**
19582518 GCATACGAAGCTCATTCGTAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
*
19582544 GCATACGAAGTTCATTCCCAGTCT
1 GCATACGAAGCTCATTCCCAGTCT
19582568 TAGATCGGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:19583447 original size:27 final size:27
Alignment explanation
Indices: 19583417--19583472 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
19583407 AGGCATACGG
*
19583417 AGTTCATTCCCAGTCTAAGATCAGACC
1 AGTTCATTACCAGTCTAAGATCAGACC
19583444 AGTTCATTACCAGTCTAAGATCAGACC
1 AGTTCATTACCAGTCTAAGATCAGACC
19583471 AG
1 AG
19583473 ACCAAGGCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (27 bp):
AGTTCATTACCAGTCTAAGATCAGACC
Found at i:19584830 original size:713 final size:713
Alignment explanation
Indices: 19583444--19584910 Score: 2059
Period size: 714 Copynumber: 2.1 Consensus size: 713
19583434 AGATCAGACC
* * * * * * *
19583444 AGTTCATTACCAGTCTAAGATCAGACCAGACCAAGGCTTACGGTAGCACATTCAGGACTTGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCAGGACTCGGGCA
* * * * * * *
19583509 TGTGCTGGTGCCGTATTTTTCTTTGACATGGCGCCATCGTCGAAGCATCGTCGGAGAACCTGACC
66 TATGCTGGTGCCGCATTTTTCTTTCACAAGGCACCATCATCGAAGCATCATCGGAGAACCTGACC
* * * ** * * *
19583574 GGCGGCATTGAGGTTTCGGCGATCGGGGGGGTTGAGGGGTGTGCGCACATGATGTGTGATGGGTG
131 GACGGCATTGAGGTTCCGACGATCGGGGGGGAGGAGGGGTGTGCGCACATAATCTGCGATGGGTG
*
19583639 CTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCACCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCACCTTA
* * *
19583704 AAGAGCATCTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAATGTGCCTGAAATTGGGACACT
261 AAGACCATCTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGCCTGAAATGGGGACACT
* * * *
19583769 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGGGTTTTTGGCTGAATTTTTTTGTCCATGCCA
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTCCATACCA
*
19583834 ACAAAAATAAAAGAATCATGTCTACAAAGTTTGGAGCCAAAAATCCTTCCAAAAAAATTTTAAAA
391 ACAAAAATAAAAGAATCACGTCTACAAAGTTTGGAGCCAAAAATCCTTCCAAAAAAATTTTAAAA
* ** *
19583899 AATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATGAAAAACGAGTCGTCTTGCCATGAAA
456 AATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAAAGAAAAACGAGTCGTCTTGCCATGAAA
* **
19583964 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGC
521 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
* ** * *
19584029 AGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCTGTC
586 AGAAATATGAAGATACGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCATCCCGTC
* * * *
19584094 TCTCTGGCCGACGTAGTGCCCG-C-C-CGCCCGCTCATTTTGTTGATTGGCTTAGGCATCCGG
651 TCTCTGGCCGACGTAGTGCCCGCCGCTCGCCCGCTCATTTCGTCGATTGGCTTAAGCATACGG
* *
19584154 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCAGGACTCGGGCA
*
19584219 TATGCTGGTGCCGCATTTTT-TTTCACCAAGGCACCATCATCGGAGCATCATCGGAGAACCTGAC
66 TATGCTGGTGCCGCATTTTTCTTTCA-CAAGGCACCATCATCGAAGCATCATCGGAGAACCTGAC
* *
19584283 CGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGAGGGGGGGCTGTGCGCAC-TCAATCTGCGA
130 CGACGGCATTGAGGTTCCGACGATCG-GGGGG--GAGGAGGGG-TGTGCGCACAT-AATCTGCGA
* * *
19584347 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTTCCTGATCAAACCTCGAGAACTCACACC
190 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
19584412 CCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGCT-GCCATTAAAGTGTCTGAAATGG
255 ACCTTAAAGACCATCTGAGATTTTACAGGTTTGCTGCCAG-TACCCATTAAAGTGCCTGAAATGG
* *
19584476 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTG
319 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTC
* * * * *
19584541 CATACCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGG-GGCAAAACTCCTTCCGAAAAAAT
384 CATACCAACAAAAATAAAAGAATCACGTCTACAAAGTTTGGAGCCAAAAATCCTTCCAAAAAAAT
* * ** * *
19584605 TTTGAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCGTGAAAAACAG-AAAAGGAGTCGTCTTG
449 TTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAA-AGAAAAACGAGTCGTCTTG
*
19584669 CCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCAT
513 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
19584734 TGGCACATAGAAATATGTAGATACGCCTAAACCCACCTACCACTCTATCGATCCACAGCTTACGC
578 TGGCACACAGAAATATGAAGATACGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGC
* *
19584799 ATCCCGTTTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCCGCTCATTTCGTCGGTTGGCTTAAG
643 ATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCGCTCGCCCGCTCATTTCGTCGATTGGCTTAAG
*
19584864 CATAGGG
707 CATACGG
* **
19584871 AGTTCATTCCCAATCTAAGATTGGACCAGACCGAGGGTTG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
19584911 TGACAGCATG
Statistics
Matches: 663, Mismatches: 82, Indels: 17
0.87 0.11 0.02
Matches are distributed among these distances:
709 4 0.01
710 129 0.19
711 5 0.01
713 226 0.34
714 229 0.35
715 2 0.00
716 1 0.00
717 67 0.10
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (713 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCAGGACTCGGGCA
TATGCTGGTGCCGCATTTTTCTTTCACAAGGCACCATCATCGAAGCATCATCGGAGAACCTGACC
GACGGCATTGAGGTTCCGACGATCGGGGGGGAGGAGGGGTGTGCGCACATAATCTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCACCTTA
AAGACCATCTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGCCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTCCATACCA
ACAAAAATAAAAGAATCACGTCTACAAAGTTTGGAGCCAAAAATCCTTCCAAAAAAATTTTAAAA
AATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAAAGAAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
AGAAATATGAAGATACGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCATCCCGTC
TCTCTGGCCGACGTAGTGCCCGCCGCTCGCCCGCTCATTTCGTCGATTGGCTTAAGCATACGG
Found at i:19585051 original size:26 final size:26
Alignment explanation
Indices: 19585022--19585074 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19585012 GTTGACTTAG
19585022 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19585048 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19585074 G
1 G
19585075 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19585894 original size:898 final size:897
Alignment explanation
Indices: 19584152--19585938 Score: 2593
Period size: 898 Copynumber: 2.0 Consensus size: 897
19584142 TTAGGCATCC
*
19584152 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAG
*
19584217 CATATGCTGGTGCCGCATTTTTTTTCACCAAGGCACCATCATCGGAGCATCATCGGAGAACCTGA
66 CATATGCTGGTGCCGCATTTTTCTTCACCAAGGCACCATCATCGGAGCATCATCGGAGAACCTGA
19584282 CCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGAGGGGGGGCTGTGCGCACTCAATCTGCGA
131 CCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGAGGGGGGGCTGTGCGCACTCAATCTGCGA
* * *
19584347 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTTCCTGATCAAACCTCGAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * **
19584412 CCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGCTGCCATTAAAGTGTCTGAAATGGG
261 CACTTAAAGACCATTTGAAATTTTACAGGTTTGCTGCCAGCAACCATTAAAGTGTCTGAAATGGG
* * * *
19584477 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCCAGTTTTTAGCTGAATTTTTTTATGC
** *
19584542 ATACCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCGAAAAAATTT
391 ATACCAACAAAAATAAAAGGATCACGTCTACCAAGTTCAGGCCAAAACTCCTTCCGAAAAAATTT
* * *
19584607 TGAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCGTGAAAAACAGAAAAGGAGTCGTCTTGCCA
456 TAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAACAGAAAACGAGTCGTCTTGCCA
*
19584672 TGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
521 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
19584737 CACATAGAAATATGTAGATACGCCTAAACCCACCTACCACTCTATCGATCCACAGCTTACGCATC
586 CACACACAAATATGAAGATACGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCATC
* *
19584802 CCGTTTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCCGCTCATTTCGTCGGTTGGCTTAAGCAT
651 CCGTCTCTCTGGCCGACGTAGTGCCCG-CCGCT----CGCTCATTTCATCGGTTGGCTTAAGCAT
* ** * * *
19584867 AGGGAGTTCATTCCCAATCTAAGATTGGACCAGACCGAGGGTTGTGACAGCATGATCGACAGCAC
711 ACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAACAC
** *
19584932 GTAGAGGGGGACCCGACCGATCCCCGACTTCCACATCCCGCCCCTCTGGCCGGCTCAGCGCTCGT
776 ACAGAGGGGGACCCGACCGATCCCCGACTTCCACATCCCGCCCCTCTGGCCGGCCCAGCGCTCGT
19584997 ACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAT
841 ACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAT
* * * * *
19585054 GGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATGTTGGGCTCGAG
1 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAG
* * * * ** * * *
19585119 CATGTGTTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTTGGAGAACCTGA
66 CATATGCTGGTGCCGCATTTTTCTTCACCAAGGCACCATCATCGGAGCATCATCGGAGAACCTGA
* * *
19585184 CCGACGGCATTGGGGTTCCGACGATCG-GGGGG-CG-GGGGGGG-TGTGTGCACAT-GATGTGCG
131 CCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGAGGGGGGGCTGTGCGCAC-TCAATCTGCG
* * *
19585244 GTGGGTGCTGGTACTTGGCCGTTCTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
19585309 CCACTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGCAACCATTAAAGTGTCTGAAATGG
260 CCACTTAAAGACCATTTGAAATTTTACAGGTTTGCTGCCAGCAACCATTAAAGTGTCTGAAATGG
*
19585374 GGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCCCGTTTTTAGCTGAATTTTTTTATG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCCAGTTTTTAGCTGAATTTTTTTATG
* * * * *
19585439 CATGCCAACAAAAATACAAGGATCAGGTCTACCAAGTTCAGGCCAAAAGTCCTTCCGAAAATATT
390 CATACCAACAAAAATAAAAGGATCACGTCTACCAAGTTCAGGCCAAAACTCCTTCCGAAAAAATT
* * *
19585504 TTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCTTCTTGCC
455 TTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAACAGAAAACGAGTCGTCTTGCC
19585569 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * ** * *
19585634 GCATGCACAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
585 GCACACACAAATATGAAGATACGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCAT
* * *
19585699 CCCGTCTCTTTGGCCGACGTAGTGCCCG-C-CT-GCTCGTTTCATCGGTTGGCTTAGGCATACGG
650 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCTCGCTCATTTCATCGGTTGGCTTAAGCATACGG
** *
19585761 AGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAACACACAG
715 AGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAACACACAG
*** *** * * ** * *
19585826 AGGGGGACCCGGTTGATCCCC-AGCTTGTGCATCCCGCCCCTCTTGCTGGCTGAGCGCCCGCACG
780 AGGGGGACCCGACCGATCCCCGA-CTTCCACATCCCGCCCCTCTGGCCGGCCCAGCGCTCGTACG
* * * * *
19585890 CTCGTTTCGTGGGTTGACTTAGGCAGACAGAGTTCATTCTCGGTCTAAG
844 CTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
19585939 ATCATACCGA
Statistics
Matches: 790, Mismatches: 93, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
889 1 0.00
890 177 0.22
895 2 0.00
896 1 0.00
898 453 0.57
899 8 0.01
900 2 0.00
901 5 0.01
902 141 0.18
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAG
CATATGCTGGTGCCGCATTTTTCTTCACCAAGGCACCATCATCGGAGCATCATCGGAGAACCTGA
CCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGAGGGGGGGCTGTGCGCACTCAATCTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CACTTAAAGACCATTTGAAATTTTACAGGTTTGCTGCCAGCAACCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCCAGTTTTTAGCTGAATTTTTTTATGC
ATACCAACAAAAATAAAAGGATCACGTCTACCAAGTTCAGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAACAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACACACAAATATGAAGATACGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCATC
CCGTCTCTCTGGCCGACGTAGTGCCCGCCGCTCGCTCATTTCATCGGTTGGCTTAAGCATACGGA
GTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAACACACAGA
GGGGGACCCGACCGATCCCCGACTTCCACATCCCGCCCCTCTGGCCGGCCCAGCGCTCGTACGCT
CGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAT
Found at i:19586313 original size:371 final size:365
Alignment explanation
Indices: 19585642--19586463 Score: 1070
Period size: 371 Copynumber: 2.2 Consensus size: 365
19585632 TGGCATGCAC
19585642 AAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
1 AAATATGAAT-TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
19585707 TTTGGCCGACGTAGT-------GCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
65 TCTGGCCAACGTAGTGCCGCCCGCCCGCCTCCTCGTTTCATCGATTGGCTTAGGCATACGGAGTT
* ** * *
19585765 CATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAACACACAGAGGG
130 CATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGGAAACACACAGAAGG
* * * *
19585830 GGACCCGGTTGATCCCCAGCTTGTGCATCCCGCCCCTCTTGCTGGCTGAGCGCCCGCACGCTCGT
195 GGACCCGATCGATCCCCAGCTTGTGCATCCCGCCCCTCTAGCTGGCTGAGCGCCCGCACGCTCGC
* * *
19585895 TTCGTGGGTTGACTTAGGCAGACAGAGTTCATTCTCGGTCTAAGATCATACCGAACCGAGGGTTA
260 ATCGTGGGTTGACTTAGGCAGACAGAGTTCATTCTCAGTCTAAGATCAGACCGAACCGAGGGTTA
19585960 CGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCACAG
325 CGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCACAG
*
19586001 AAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTC
1 AAATATGAA-TTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
19586066 TCTGGCCCACGTAGTGCCCGCCCGCCCGCCCTCCTACTTGTTTCGTCGATTGGCTTGGGCATACG
65 TCTGGCCAACGTAGTG-CCGCCCGCCCG-CCTCCT-C--GTTTCATCGATTGGCTTAGGCATACG
* * * * *
19586131 GAGTTCATTCCTAGTCTAAGATC-GAACCGGACTGAGGGTTACGACAGCAGGATC-GAAAGCACG
125 GAGTTCATTCCCAATCTAAGATCAG-ACCAGACCGAGGGTTACGACAGCAGGATCGGAAA-CACA
* * **
19586194 CAGAAGGGGACCCGATCGATCCTCGGCTTGTGCATCCCGCCCCTCTAGCTGGCTGAGCGCTTGCA
188 CAGAAGGGGACCCGATCGATCCCCAGCTTGTGCATCCCGCCCCTCTAGCTGGCTGAGCGCCCGCA
* * * * *
19586259 CGCTCGCATCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CTAGTCTAAGATCAGATCGGATC
253 CGCTCGCATCGTGGGTTGACTTAGGCAGACAGAGTTCATTCTC-AGTCTAAGATCAGACCGAACC
* * *
19586323 GAGGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACAG
317 GAGGGTTACGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCACAG
* * * ** *
19586372 AAATATGAAAATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGGGCATCATGTCTT
1 AAATATG-AATTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
*
19586437 TCTGGCCAACGCAGTGCCTGCCCGCCC
65 TCTGGCCAACGTAGTGCC-GCCCGCCC
19586464 ACCCGNNNNN
Statistics
Matches: 400, Mismatches: 45, Indels: 24
0.85 0.10 0.05
Matches are distributed among these distances:
359 75 0.19
360 1 0.00
367 5 0.01
368 5 0.01
369 1 0.00
370 7 0.02
371 304 0.76
372 2 0.00
ACGTcount: A:0.21, C:0.31, G:0.26, T:0.23
Consensus pattern (365 bp):
AAATATGAATTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCAACGTAGTGCCGCCCGCCCGCCTCCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTC
ATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGGAAACACACAGAAGGG
GACCCGATCGATCCCCAGCTTGTGCATCCCGCCCCTCTAGCTGGCTGAGCGCCCGCACGCTCGCA
TCGTGGGTTGACTTAGGCAGACAGAGTTCATTCTCAGTCTAAGATCAGACCGAACCGAGGGTTAC
GGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCACAG
Found at i:19587507 original size:7 final size:7
Alignment explanation
Indices: 19587497--19587564 Score: 66
Period size: 7 Copynumber: 9.6 Consensus size: 7
19587487 AAATTAAAGC
*
19587497 AAAACAA
1 AAAATAA
*
19587504 AAAATAT
1 AAAATAA
19587511 AAAATAA
1 AAAATAA
19587518 AAAAGTAA
1 AAAA-TAA
19587526 GAAAATAA
1 -AAAATAA
19587534 AAAAT-A
1 AAAATAA
** *
19587540 TGAATCA
1 AAAATAA
19587547 AAAATAA
1 AAAATAA
19587554 AAAATAA
1 AAAATAA
19587561 AAAA
1 AAAA
19587565 AGACAAAAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
6 4 0.08
7 36 0.72
8 6 0.12
9 4 0.08
ACGTcount: A:0.78, C:0.03, G:0.04, T:0.15
Consensus pattern (7 bp):
AAAATAA
Found at i:19588252 original size:7 final size:7
Alignment explanation
Indices: 19588211--19588280 Score: 59
Period size: 7 Copynumber: 9.6 Consensus size: 7
19588201 AAATTAAAGC
*
19588211 AAAACAA
1 AAAATAA
19588218 AAAATATA
1 AAAATA-A
19588226 AAATATAA
1 AAA-ATAA
*
19588234 AAAGTAA
1 AAAATAA
19588241 GAAAATAA
1 -AAAATAA
*
19588249 AAAATGA
1 AAAATAA
** *
19588256 TGAATCA
1 AAAATAA
19588263 AAAATAA
1 AAAATAA
19588270 AAAATAA
1 AAAATAA
19588277 AAAA
1 AAAA
19588281 AGTCAAAAAT
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
7 33 0.66
8 14 0.28
9 3 0.06
ACGTcount: A:0.76, C:0.03, G:0.06, T:0.16
Consensus pattern (7 bp):
AAAATAA
Found at i:19588907 original size:18 final size:15
Alignment explanation
Indices: 19588890--19588973 Score: 50
Period size: 15 Copynumber: 5.6 Consensus size: 15
19588880 TTATGAAAAT
*
19588890 ATAAATAAAGAAAGAA
1 ATAAA-AAAAAAAGAA
19588906 ATAAAAAAAAAAGAA
1 ATAAAAAAAAAAGAA
**
19588921 A-AAAAATTAAAGCAA
1 ATAAAAAAAAAAG-AA
*
19588936 A-ACAAAAAATATA-AA
1 ATA-AAAAAA-AAAGAA
* *
19588951 ATATAAAAAAGA-AA
1 ATAAAAAAAAAAGAA
19588965 ATAAAAAAA
1 ATAAAAAAA
19588974 TGAATCAAAA
Statistics
Matches: 55, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
14 21 0.38
15 22 0.40
16 10 0.18
17 2 0.04
ACGTcount: A:0.80, C:0.02, G:0.06, T:0.12
Consensus pattern (15 bp):
ATAAAAAAAAAAGAA
Found at i:19589005 original size:32 final size:33
Alignment explanation
Indices: 19588948--19589009 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
19588938 CAAAAAATAT
* *
19588948 AAAATATAAAAAAGAAAATAAAAAAATGAATCA
1 AAAATATAAAAAAAAAAAGAAAAAAATGAATCA
*
19588981 AAAATA-AAAAAAAAAAAGACAAAAATGAA
1 AAAATATAAAAAAAAAAAGAAAAAAATGAA
19589010 ATGAAACGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 20 0.77
33 6 0.23
ACGTcount: A:0.79, C:0.03, G:0.06, T:0.11
Consensus pattern (33 bp):
AAAATATAAAAAAAAAAAGAAAAAAATGAATCA
Found at i:19589143 original size:32 final size:32
Alignment explanation
Indices: 19589106--19589175 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 32
19589096 ATTCAAGGAC
* * **
19589106 AAAAAATTAAAAAGAGAAAAGTTAATGCAA-A
1 AAAAAATGAAAAAGAAAAAAGAAAATGCAACA
*
19589137 ATAAAAATGAAAACGAAAAAAGAAAATGCAACA
1 A-AAAAATGAAAAAGAAAAAAGAAAATGCAACA
19589170 AAAAAA
1 AAAAAA
19589176 CTATAAGAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
31 1 0.03
32 29 0.91
33 2 0.06
ACGTcount: A:0.71, C:0.06, G:0.11, T:0.11
Consensus pattern (32 bp):
AAAAAATGAAAAAGAAAAAAGAAAATGCAACA
Found at i:19589624 original size:29 final size:29
Alignment explanation
Indices: 19589592--19589676 Score: 70
Period size: 30 Copynumber: 2.9 Consensus size: 29
19589582 AAAAATTTAT
19589592 GAAAATATAAA-TAAAGAAAGAAAAAAAAA
1 GAAAATATAAAGTAAAGAAA-AAAAAAAAA
* *
19589621 GAAAA-A-AATATTAAAGCAAAACAAAAAATA
1 GAAAATATAA-AGTAAAG-AAAA-AAAAAAAA
* *
19589651 TAAAATATAAAGT-AAGAAATAAAAAA
1 GAAAATATAAAGTAAAGAAAAAAAAAA
19589677 TATGAATCAA
Statistics
Matches: 46, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
27 2 0.04
28 8 0.17
29 14 0.30
30 17 0.37
31 3 0.07
32 2 0.04
ACGTcount: A:0.75, C:0.02, G:0.08, T:0.14
Consensus pattern (29 bp):
GAAAATATAAAGTAAAGAAAAAAAAAAAA
Found at i:19589656 original size:59 final size:60
Alignment explanation
Indices: 19589539--19589676 Score: 149
Period size: 59 Copynumber: 2.3 Consensus size: 60
19589529 AGAAACAACG
* ** * *
19589539 ATAAATAAA-AAAGAAAAAAAAATAAAAAAATCCAAAACATTATAAAAATTTATGAAAAT
1 ATAAATAAAGAAAGAAAAAAAAAGAAAAAAATCCAAAACAAAACAAAAATATATGAAAAT
** *
19589598 ATAAATAAAGAAAGAAAAAAAAAGAAAAAAATATTAAAGCAAAACAAAAA-ATAT-AAAAT
1 ATAAATAAAGAAAGAAAAAAAAAGAAAAAAAT-CCAAAACAAAACAAAAATATATGAAAAT
*
19589657 ATAAAGT-AAGAAATAAAAAA
1 ATAAA-TAAAGAAAGAAAAAA
19589677 TATGAATCAA
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
59 31 0.46
60 25 0.37
61 11 0.16
ACGTcount: A:0.74, C:0.04, G:0.06, T:0.17
Consensus pattern (60 bp):
ATAAATAAAGAAAGAAAAAAAAAGAAAAAAATCCAAAACAAAACAAAAATATATGAAAAT
Found at i:19589721 original size:7 final size:7
Alignment explanation
Indices: 19589638--19589707 Score: 54
Period size: 7 Copynumber: 10.3 Consensus size: 7
19589628 ATATTAAAGC
*
19589638 AAAACAA
1 AAAATAA
*
19589645 AAAATAT
1 AAAATAA
*
19589652 AAAATAT
1 AAAATAA
*
19589659 AAAGTAA
1 AAAATAA
*
19589666 GAAATAA
1 AAAATAA
19589673 AAAAT-A
1 AAAATAA
** *
19589679 TGAATCA
1 AAAATAA
19589686 AAAATAA
1 AAAATAA
19589693 AAAATAA
1 AAAATAA
19589700 AAAA-AA
1 AAAATAA
19589706 AA
1 AA
19589708 GAAGAAAAAT
Statistics
Matches: 50, Mismatches: 12, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
6 8 0.16
7 42 0.84
ACGTcount: A:0.77, C:0.03, G:0.04, T:0.16
Consensus pattern (7 bp):
AAAATAA
Found at i:19590351 original size:7 final size:7
Alignment explanation
Indices: 19590320--19590442 Score: 68
Period size: 7 Copynumber: 16.9 Consensus size: 7
19590310 AAAATTTATG
*
19590320 AAAATAT
1 AAAAAAT
*
19590327 AAATAAAG
1 AAA-AAAT
19590335 AAAGAAAT
1 AAA-AAAT
19590343 AAAAAAT
1 AAAAAAT
*
19590350 AAAAAAGG
1 AAAAAA-T
19590358 AAAAAAT
1 AAAAAAT
* **
19590365 ATTAAAGC
1 A-AAAAAT
19590373 AAAACAA-
1 AAAA-AAT
*
19590380 AAAATAT
1 AAAAAAT
*
19590387 AAAATAT
1 AAAAAAT
*
19590394 AAAAAGT
1 AAAAAAT
19590401 AAGAAAAT
1 AA-AAAAT
*
19590409 CAAAAAT
1 AAAAAAT
**
19590416 AATGAAT
1 AAAAAAT
*
19590423 CAAAAAT
1 AAAAAAT
19590430 AAAAAAT
1 AAAAAAT
19590437 AAAAAA
1 AAAAAA
19590443 AGACAAAAAT
Statistics
Matches: 87, Mismatches: 23, Indels: 12
0.71 0.19 0.10
Matches are distributed among these distances:
6 1 0.01
7 59 0.68
8 27 0.31
ACGTcount: A:0.75, C:0.03, G:0.07, T:0.15
Consensus pattern (7 bp):
AAAAAAT
Found at i:19590351 original size:23 final size:22
Alignment explanation
Indices: 19590320--19590452 Score: 67
Period size: 23 Copynumber: 6.0 Consensus size: 22
19590310 AAAATTTATG
*
19590320 AAAATATAAATAAA-GAAAGAAAT
1 AAAAAATAAA-AAAGGAAA-AAAT
19590343 AAAAAATAAAAAAGGAAAAAAT
1 AAAAAATAAAAAAGGAAAAAAT
** ** *
19590365 ATTAAA-GCAAAA-CAAAAAAT
1 AAAAAATAAAAAAGGAAAAAAT
* *
19590385 ATAAAATATAAAAAGTAAGAAAAT
1 AAAAAATA-AAAAAGGAA-AAAAT
* ** **
19590409 CAAAAATAATGAA-TCAAAAAT
1 AAAAAATAAAAAAGGAAAAAAT
*
19590430 AAAAAATAAAAAAAGACAAAAAT
1 AAAAAATAAAAAAGGA-AAAAAT
19590453 GAAATGAAAC
Statistics
Matches: 83, Mismatches: 20, Indels: 14
0.71 0.17 0.12
Matches are distributed among these distances:
20 12 0.14
21 19 0.23
22 17 0.20
23 24 0.29
24 11 0.13
ACGTcount: A:0.74, C:0.04, G:0.07, T:0.15
Consensus pattern (22 bp):
AAAAAATAAAAAAGGAAAAAAT
Found at i:19591083 original size:22 final size:22
Alignment explanation
Indices: 19591053--19591189 Score: 63
Period size: 22 Copynumber: 6.2 Consensus size: 22
19591043 AAAATTTATG
19591053 AAAATATAAATAAA-GAAAGAAAT
1 AAAATATAAA-AAAGGAAA-AAAT
19591076 AAAA-ATAAAAAAGGAAAAAAT
1 AAAATATAAAAAAGGAAAAAAT
* * *
19591097 ATTAAAGCA-AAACAA--AAAATAT
1 A--AAA-TATAAAAAAGGAAAAAAT
*
19591119 AAAATAT-AAAAAGTAAGAAAAT
1 AAAATATAAAAAAGGAA-AAAAT
* ** *
19591141 AAAAAATAATGAA-TAAAAAAT
1 AAAATATAAAAAAGGAAAAAAT
* *
19591162 AAAAAATAAAAAAAGGCAAAAAT
1 AAAATAT-AAAAAAGGAAAAAAT
*
19591185 GAAAT
1 AAAAT
19591190 GAAACAAGAA
Statistics
Matches: 88, Mismatches: 14, Indels: 24
0.70 0.11 0.19
Matches are distributed among these distances:
19 5 0.06
20 3 0.03
21 22 0.25
22 33 0.38
23 19 0.22
24 5 0.06
25 1 0.01
ACGTcount: A:0.74, C:0.02, G:0.08, T:0.15
Consensus pattern (22 bp):
AAAATATAAAAAAGGAAAAAAT
Found at i:19591092 original size:18 final size:18
Alignment explanation
Indices: 19591054--19591088 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
19591044 AAATTTATGA
*
19591054 AAATATAAATAAAGAAAG
1 AAATAAAAATAAAGAAAG
19591072 AAATAAAAATAAA-AAAG
1 AAATAAAAATAAAGAAAG
19591089 GAAAAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.14
Consensus pattern (18 bp):
AAATAAAAATAAAGAAAG
Found at i:19591122 original size:7 final size:7
Alignment explanation
Indices: 19591105--19591174 Score: 77
Period size: 7 Copynumber: 9.6 Consensus size: 7
19591095 ATATTAAAGC
*
19591105 AAAACAA
1 AAAATAA
19591112 AAAATATA
1 AAAATA-A
19591120 AAATATAA
1 AAA-ATAA
*
19591128 AAAGTAA
1 AAAATAA
19591135 GAAAATAA
1 -AAAATAA
19591143 AAAATAA
1 AAAATAA
**
19591150 TGAATAA
1 AAAATAA
19591157 AAAATAA
1 AAAATAA
19591164 AAAATAA
1 AAAATAA
19591171 AAAA
1 AAAA
19591175 AGGCAAAAAT
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
7 36 0.68
8 14 0.26
9 3 0.06
ACGTcount: A:0.79, C:0.01, G:0.04, T:0.16
Consensus pattern (7 bp):
AAAATAA
Found at i:19591129 original size:14 final size:14
Alignment explanation
Indices: 19591111--19591173 Score: 51
Period size: 16 Copynumber: 4.4 Consensus size: 14
19591101 AAGCAAAACA
19591111 AAAAATATA-AAATAT
1 AAAAATA-AGAAA-AT
19591126 AAAAAGTAAGAAAAT
1 AAAAA-TAAGAAAAT
*
19591141 AAAAAATAATGAATA-
1 -AAAAATAA-GAAAAT
19591156 AAAAATAA-AAAAT
1 AAAAATAAGAAAAT
19591169 AAAAA
1 AAAAA
19591174 AAGGCAAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
12 3 0.07
13 5 0.12
14 8 0.20
15 11 0.27
16 14 0.34
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (14 bp):
AAAAATAAGAAAAT
Found at i:19591144 original size:29 final size:27
Alignment explanation
Indices: 19591105--19591174 Score: 77
Period size: 31 Copynumber: 2.4 Consensus size: 27
19591095 ATATTAAAGC
* *
19591105 AAAACAAAAAATATAAAATATAAAAAGTAA
1 AAAATAAAAAATA-AGAATA-AAAAA-TAA
19591135 GAAAATAAAAAATAATGAATAAAAAATAA
1 -AAAATAAAAAATAA-GAATAAAAAATAA
19591164 AAAATAAAAAA
1 AAAATAAAAAA
19591175 AGGCAAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
28 11 0.31
29 3 0.08
30 6 0.17
31 16 0.44
ACGTcount: A:0.79, C:0.01, G:0.04, T:0.16
Consensus pattern (27 bp):
AAAATAAAAAATAAGAATAAAAAATAA
Found at i:19591174 original size:14 final size:14
Alignment explanation
Indices: 19591053--19591174 Score: 77
Period size: 14 Copynumber: 8.4 Consensus size: 14
19591043 AAAATTTATG
* *
19591053 AAAATATAAATAAAG
1 AAAAAATAAA-AAAT
19591068 AAAGAAAT-AAAAAT
1 AAA-AAATAAAAAAT
*
19591082 AAAAAAGGAAAAAAT
1 AAAAAA-TAAAAAAT
* **
19591097 ATTAAAGCAAAACAA-
1 A-AAAAATAAAA-AAT
* *
19591112 AAAATATAAAATAT
1 AAAAAATAAAAAAT
*
19591126 AAAAAGTAAGAAAAT
1 AAAAAATAA-AAAAT
**
19591141 AAAAAATAATGAAT
1 AAAAAATAAAAAAT
19591155 AAAAAATAAAAAAT
1 AAAAAATAAAAAAT
19591169 AAAAAA
1 AAAAAA
19591175 AGGCAAAAAT
Statistics
Matches: 81, Mismatches: 19, Indels: 15
0.70 0.17 0.13
Matches are distributed among these distances:
13 4 0.05
14 40 0.49
15 29 0.36
16 8 0.10
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.16
Consensus pattern (14 bp):
AAAAAATAAAAAAT
Found at i:19591506 original size:731 final size:730
Alignment explanation
Indices: 19587476--19592352 Score: 8103
Period size: 735 Copynumber: 6.8 Consensus size: 730
19587466 NNNAAGAAAG
19587476 AAAAAAA-AAAAAA-ATTAAAGCAAAACAAAAAATATAAAATA-AAAAAGTAAGAAAATAAAAAA
1 AAAAAAAGAAAAAATATTAAAGCAAAACAAAAAATATAAAATATAAAAAGTAAGAAAATAAAAAA
19587538 T-ATGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAG--AAAAA
66 TAATGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAA
19587600 ATATTTGAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATT
131 ATATTTGAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATT
*
19587665 CAA-GACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAA-AAAA-GAAAAAAG-AAA
196 CAAGGGCAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAGAAAACGAAAAAAGAAAA
19587726 --CAACAAAAAAAA-TATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAA
261 TGCAACAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAA
*
19587788 ATTAAGAAAAGAATAAAAATGAAAAGACAAAAGATTTATGAAAAA-AAAAAATCCAAGGAAGTGT
326 ATTAAGAAAAGAATAAAAATGAAAAGACAAGAGATTTATGAAAAATAAAAAATCCAAGGAAGTGT
*
19587852 GAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCGAAAAAAATTAGAAAAACAAGAAAAAAT
391 GAAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGCGAAAAAAATTAGAAAAACAAG--AAAA-
19587917 AAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGTAGAAATTTTTAA
453 AAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGTAGAAATTTTTAA
*
19587982 AACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAA-AATAAAAAAAAAAA
518 AACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAATAAT-TAAAAAAAAA
19588046 AGAAAAATTTAAAAGG-AAAA-AGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAACA
582 AGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAACA
*
19588109 ACGATAAAT-AAAAAAG-AAAGAAAAAAAAAAAATCCAAAACATTATAAAAATTTATGAAAATAT
647 ACGATAAATAAAAAAAGAAAAGAAAAATAAAAAATCCAAAACATTATAAAAATTTATGAAAATAT
19588172 AAATAAAGAAAGAAAT---
712 AAATAAAGAAAGAAATAAA
*
19588188 AAAAAAAGAAAAAAAATTAAAGCAAAACAAAAAATATAAAATATAAAAAGTAAGAAAATAAAAAA
1 AAAAAAAGAAAAAATATTAAAGCAAAACAAAAAATATAAAATATAAAAAGTAAGAAAATAAAAAA
* *
19588253 TGATGAATCAAAAATAAAAAATAAAAAAAGTCAAAAATGAAATGAAACGAGAAAATAG-AAAAAA
66 TAATGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAA
19588317 ATATTTGAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATT
131 ATATTTGAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATT
* *
19588382 CAA-GACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAA-AAAA
196 CAAGGGCAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAGAAAACGAAAAAAGAAAA
19588445 TGCAACAAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAA
261 TGCAAC-AAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAA
*
19588510 AATTAAGAAAAGAATAAAAATGAAAAGACAAAAGATTTATGAAAAATAAAAAATCCAAGGAAGTG
325 AATTAAGAAAAGAATAAAAATGAAAAGACAAGAGATTTATGAAAAATAAAAAATCCAAGGAAGTG
*
19588575 TGAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCGAAAAAAATTAGAAAAA-AAGAAAAAT
390 TGAAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGCGAAAAAAATTAGAAAAACAAG-AAAA-
19588639 AAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGTAGAAATTTTTAA
453 AAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGTAGAAATTTTTAA
*
19588704 AACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAATAAGT-AAAAAAAA
518 AACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATG-AAAAATAATTAAAAAAAAA
19588768 AGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAACA
582 AGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAACA
*
19588833 ACGATAAATAAAAAAAG--AA-AAATA-AAAAAATCCAAAACA-T-TAAAAATTTATGAAAATAT
647 ACGATAAATAAAAAAAGAAAAGAAAAATAAAAAATCCAAAACATTATAAAAATTTATGAAAATAT
19588892 AAATAAAGAAAGAAATAAA
712 AAATAAAGAAAGAAATAAA
*
19588911 AAAAAAAGAAAAAAAATTAAAGCAAAACAAAAAATATAAAATAT-AAAA--AAGAAAAT-AAAAA
1 AAAAAAAGAAAAAATATTAAAGCAAAACAAAAAATATAAAATATAAAAAGTAAGAAAATAAAAAA
19588972 -AATGAATCAAAAAT-AAAAA-AAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAA
66 TAATGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAA
19589034 ATATTTGAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATT
131 ATATTTGAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATT
* *
19589099 CAAGGACAAAAAATT-AAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAA
196 CAAGGGCAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAGAAAACGAAAAAAGAAAA
19589163 TGCAAC-AAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAAT-AAAAGAAA-TT-TGAAAAA
261 TGCAACAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAA
*
19589224 ATTAAGAAAAGAATAAAAATGAAAAGACAAAAGATTTATGAAAAATAAAAAATCCAAGGAAGTGT
326 ATTAAGAAAAGAATAAAAATGAAAAGACAAGAGATTTATGAAAAATAAAAAATCCAAGGAAGTGT
*
19589289 GAAAAAAAAATGGAAACAAGAAAT-AAAAGAATTTT--GAAAAAAATTAGAAAAACAAGAAAAAA
391 G-AAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGCGAAAAAAATTAGAAAAACAAGAAAAAA
19589351 AAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAA--TTTTGTAGAAATTTTTAAAA
455 AAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGTAGAAATTTTTAAAA
19589414 CGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAT-A--AAAAAAAAAAGA
520 CGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAATAATTAAAAAAAAAAGA
* *
19589476 AAAATCTAAAAGGAAAAAAAGTTAATGAAAAA-T-TAAAAATACAATAGAAAATAAGAAACAACG
585 AAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAACAACG
19589539 ATAAAT-AAAAAAGAAAA-AAAAATAAAAAAATCCAAAACATTATAAAAATTTATGAAAATATAA
650 ATAAATAAAAAAAGAAAAGAAAAAT-AAAAAATCCAAAACATTATAAAAATTTATGAAAATATAA
19589602 ATAAAGAAAG--A-AAA
714 ATAAAGAAAGAAATAAA
*
19589616 AAAAAGA-AAAAAATATTAAAGCAAAACAAAAAATATAAAATAT--AAAGTAAG-AAATAAAAAA
1 AAAAAAAGAAAAAATATTAAAGCAAAACAAAAAATATAAAATATAAAAAGTAAGAAAATAAAAAA
*
19589677 T-ATGAATCAAAAATAAAAAATAAAAAAAAAAGAAGAAAAATGAAATGAAACGAGAAAATAGAAA
66 TAATGAATCAAAAATAAAAAAT---AAAAAAAG-ACAAAAATGAAATGAAACGAGAAAATAGAAA
* *
19589741 AAAAATATTTGAAAAAATATAAAAAAATTGAAAAACATATAAGATATAATAAGAAAAAAATATAA
127 AAAAATATTTGAAAAAATA-CAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAA
* * *
19589806 AAA-TCAAGGGAAAAAAATTAAAAAAGATAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAA
191 AAATTCAAGGGCAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAGAAAACGAAAAAA
19589870 GAAAATGCACACAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGT
256 GAAAATGCA-ACAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGT
19589935 G--AAAATTAAGAAAAGAATAAAAATGAAAAGACAAGAGATTTATGAAAAATAAAAAATCC-AGG
320 GAAAAAATTAAGAAAAGAATAAAAATGAAAAGACAAGAGATTTATGAAAAATAAAAAATCCAAGG
* *
19589997 AAGTGTGAAAAAAAGTGGAAAGAAGAAATAGAAAGAATTTTGCGAAAAAAAATTAGAAAAACAAG
385 AAGTGTGAAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGCG-AAAAAAATTAGAAAAACAAG
*
19590062 AAAAAAAAAATGAAGAGGTAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGTAGAAATTT
449 AAAAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGTAGAAATTT
** * *
19590127 TTAAAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGACGGCGCATGAAAAATAAGTAAAAAA
514 TTAAAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAATAA-T-TAAAA
* *
19590192 AAAAAAGAAAAATTTAAAAGGAATAGGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAG
577 AAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAG
19590257 AAACAACGATAAATAAAAAAAGAAAAGAAAAATAAAAAATCCAAAACATTATAAAAATTTATGAA
642 AAACAACGATAAATAAAAAAAGAAAAGAAAAATAAAAAATCCAAAACATTATAAAAATTTATGAA
19590322 AATATAAATAAAGAAAGAAATAAAAA
707 AATATAAATAAAGAAAGAAAT--AAA
*
19590348 ATAAAAAAGGAAAAAATATTAAAGCAAAACAAAAAATATAAAATATAAAAAGTAAGAAAATCAAA
1 A-AAAAAA-GAAAAAATATTAAAGCAAAACAAAAAATATAAAATATAAAAAGTAAGAAAATAAAA
19590413 AATAATGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAA
64 AATAATGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAA
*
19590478 AAATATTTGAAAAAATACAAAAAATTGAAAAATATATAAGATATAATAAGAAAACAATATAAAAA
129 AAATATTTGAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAA
19590543 TTCAAGGGCAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAGAAAACGAAAAAAGAA
194 TTCAAGGGCAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAGAAAACGAAAAAAGAA
*
19590608 AATGCAACAAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTCTG-A
259 AATGCAAC-AAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAA
19590672 AAAATTAAGAAAAGAATAAAAATGAAAAGACAAGAGATTTATGAAAAATAAAAAATCCAAGGAAG
323 AAAATTAAGAAAAGAATAAAAATGAAAAGACAAGAGATTTATGAAAAATAAAAAATCCAAGGAAG
*
19590737 TGTGAAAAAAAATGGAAAGAAGAAATAGAAAGAATTTTGCGAAAAAAATTAGAAAAACAAG-AAA
388 TGTGAAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGCGAAAAAAATTAGAAAAACAAGAAAA
*
19590801 AAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGTAGAAATTTTAAA
453 AAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGTAGAAATTTTTAA
** *
19590866 AACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGACGGCGCATGAAAAATAATTAAAAAAAAAA
518 AACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAATAATTAAAAAAAAAA
*
19590931 -AAAAATTTAAAAGGAAAAGGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAACAA
583 GAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAACAA
19590995 CGATAAATAAAAAAAGAAAAGAAAAATAAAAAATGCCAAAACATTATAAAAATTTATGAAAATAT
648 CGATAAATAAAAAAAGAAAAGAAAAATAAAAAAT-CCAAAACATTATAAAAATTTATGAAAATAT
19591060 AAATAAAGAAAGAAATAAAA
712 AAATAAAGAAAGAAAT-AAA
19591080 ATAAAAAAGGAAAAAATATTAAAGCAAAACAAAAAATATAAAATATAAAAAGTAAGAAAATAAAA
1 A-AAAAAA-GAAAAAATATTAAAGCAAAACAAAAAATATAAAATATAAAAAGTAAGAAAATAAAA
* * *
19591145 AATAATGAATAAAAAATAAAAAATAAAAAAAGGCAAAAATGAAATGAAACAAGAAAATAG-AAAA
64 AATAATGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAA
19591209 AAATATTTGAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAA
129 AAATATTTGAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAA
19591274 TTCAAGGGCAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAGAAAACGAAAAAAGAA
194 TTCAAGGGCAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAGAAAACGAAAAAAGAA
19591339 AATGCAACAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAA
259 AATGCAACAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAA
* *
19591404 AAATTAAGAAATGAATAAAAACGAAAAGACAAGAGATTTATGAAAAATAAAAAATCCAAGGAAGT
324 AAATTAAGAAAAGAATAAAAATGAAAAGACAAGAGATTTATGAAAAATAAAAAATCCAAGGAAGT
*
19591469 GTGAAAAAAAATGGAAAGAAGAAATAAAAAAAATTTTGCGAAAAAAATTAGAAAAACAAG-AAAA
389 GTGAAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGCGAAAAAAATTAGAAAAACAAGAAAAA
*
19591533 AAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGTAGAAAATTTTAAA
454 AAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGTAGAAATTTTTAAA
*
19591598 ACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAATAAGTAAAAAAAAAA
519 ACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATG-AAAAATAATTAAAAAAAAAA
19591663 GAGTAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAAC
583 GA--AAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAAC
19591728 AACGATAAATAAAAAAAGAAAAGAAAAATAAAAAAATCCAAAACATTATAAAAATTTATGAAAAT
646 AACGATAAATAAAAAAAGAAAAGAAAAAT-AAAAAATCCAAAACATTATAAAAATTTATGAAAAT
19591793 ATAAAT----AAA-AAAT---
710 ATAAATAAAGAAAGAAATAAA
*
19591806 ------A-AAAAAATATTAAAGCAAAACAAAAAATATAAAATAGAAAAAGTAAG---A-AAAAAA
1 AAAAAAAGAAAAAATATTAAAGCAAAACAAAAAATATAAAATATAAAAAGTAAGAAAATAAAAAA
* *
19591860 TAATGAATAAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAACAAGAAAATAGAAAAAAA
66 TAATGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAA
19591925 ATATTTGAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATT
131 ATATTTGAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATT
19591990 CAAGGGCAAAAAATTAAAAAAGAGAAAAGTTAATGC------------AAAA-GAAAAAAGAAAA
196 CAAGGGCAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAGAAAACGAAAAAAGAAAA
* * *
19592042 TGAAACAAAAAAAACTATAAGAATTTAAAAATGGAAATAAAAAATAAAAAGAAATTTGTTAAAAA
261 TGCAACAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAA
*
19592107 ATTAAGAAAAGAATAAAAATGAAAAGACAAGAGATTTATGAAAAATAAAAAATCTAAGGAAGTGT
326 ATTAAGAAAAGAATAAAAATGAAAAGACAAGAGATTTATGAAAAATAAAAAATCCAAGGAAGTGT
*
19592172 GAAAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGCAAAAAAAATTAGAAAAACAAGAAAAAA
391 G-AAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGCGAAAAAAATTAGAAAAACAAG--AAAA
* * *
19592237 TAAAAAATGAAGAGGCAAAAACATTAAATAAAATAAAAAGAAAAAATGTTTTGTAGAAAATTTTA
453 -AAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGTAGAAATTTTTA
19592302 AAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAA
517 AAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAA
19592353 ATAAGCTTAA
Statistics
Matches: 3997, Mismatches: 74, Indels: 195
0.94 0.02 0.05
Matches are distributed among these distances:
701 137 0.03
702 66 0.02
703 39 0.01
704 46 0.01
705 79 0.02
706 130 0.03
707 7 0.00
708 94 0.02
710 53 0.01
711 84 0.02
712 108 0.03
713 175 0.04
714 218 0.05
715 95 0.02
716 131 0.03
717 353 0.09
718 38 0.01
719 82 0.02
720 44 0.01
721 5 0.00
722 167 0.04
723 155 0.04
724 169 0.04
725 8 0.00
726 36 0.01
727 60 0.02
728 6 0.00
729 1 0.00
730 57 0.01
731 375 0.09
732 245 0.06
733 62 0.02
734 48 0.01
735 447 0.11
736 93 0.02
737 54 0.01
738 10 0.00
739 20 0.01
ACGTcount: A:0.68, C:0.04, G:0.11, T:0.17
Consensus pattern (730 bp):
AAAAAAAGAAAAAATATTAAAGCAAAACAAAAAATATAAAATATAAAAAGTAAGAAAATAAAAAA
TAATGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAA
ATATTTGAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATT
CAAGGGCAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAGAAAACGAAAAAAGAAAA
TGCAACAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAA
ATTAAGAAAAGAATAAAAATGAAAAGACAAGAGATTTATGAAAAATAAAAAATCCAAGGAAGTGT
GAAAAAAAATGGAAAGAAGAAATAAAAAGAATTTTGCGAAAAAAATTAGAAAAACAAGAAAAAAA
AAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGTAGAAATTTTTAAAAC
GAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAATAATTAAAAAAAAAAGAA
AAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAACAACGA
TAAATAAAAAAAGAAAAGAAAAATAAAAAATCCAAAACATTATAAAAATTTATGAAAATATAAAT
AAAGAAAGAAATAAA
Found at i:19591807 original size:7 final size:7
Alignment explanation
Indices: 19591795--19591887 Score: 53
Period size: 7 Copynumber: 12.4 Consensus size: 7
19591785 ATGAAAATAT
19591795 AAATAAA
1 AAATAAA
19591802 AAATAAAA
1 AAAT-AAA
**
19591810 AAATATT
1 AAATAAA
**
19591817 AAA-GCA
1 AAATAAA
*
19591823 AAACAAA
1 AAATAAA
*
19591830 AAATATA
1 AAATAAA
19591837 AAATAGAA
1 AAATA-AA
19591845 AAAGTAAGA
1 AAA-TAA-A
*
19591854 AAAAAATA
1 AAATAA-A
19591862 ATGAATAAA
1 A--AATAAA
19591871 AAATAAA
1 AAATAAA
19591878 AAATAAA
1 AAATAAA
19591885 AAA
1 AAA
19591888 AGACAAAAAT
Statistics
Matches: 66, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
6 3 0.05
7 35 0.53
8 16 0.24
9 8 0.12
10 4 0.06
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.15
Consensus pattern (7 bp):
AAATAAA
Found at i:19591899 original size:34 final size:34
Alignment explanation
Indices: 19591831--19591925 Score: 81
Period size: 34 Copynumber: 2.8 Consensus size: 34
19591821 CAAAACAAAA
* * *
19591831 AATATAAAATAGAAAAAGTAAGAAAAAAATAATG
1 AATAAAAAATAGAAAAAGTAAAAAAAAAAAAATG
19591865 AATAAAAAATA-AAAAA-TAAAAAAAGACAAAAATG
1 AATAAAAAATAGAAAAAGTAAAAAAA-A-AAAAATG
* *
19591899 AAATGAAACA-AGAAAATAG-AAAAAAAA
1 -AATAAAAAATAGAAAA-AGTAAAAAAAA
19591926 TATTTGAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
32 7 0.14
33 6 0.12
34 17 0.34
35 12 0.24
36 8 0.16
ACGTcount: A:0.76, C:0.02, G:0.09, T:0.13
Consensus pattern (34 bp):
AATAAAAAATAGAAAAAGTAAAAAAAAAAAAATG
Found at i:19592731 original size:26 final size:26
Alignment explanation
Indices: 19592691--19592746 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
19592681 TGGGTTGACT
*
19592691 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
19592717 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
19592743 TAAG
1 TAAG
19592747 ATCGGACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:19593629 original size:26 final size:26
Alignment explanation
Indices: 19593593--19593649 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
19593583 GTGGGTTGAC
19593593 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
19593619 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
19593645 CTAAG
1 CTAAG
19593650 ATCAGACCGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:19595427 original size:26 final size:26
Alignment explanation
Indices: 19595398--19595450 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19595388 GTTGACTTAG
* *
19595398 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
19595424 GCATACGAAGTTCAATCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
19595450 G
1 G
19595451 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:19595961 original size:903 final size:904
Alignment explanation
Indices: 19592357--19631784 Score: 32075
Period size: 899 Copynumber: 43.3 Consensus size: 904
19592347 GAAAAAATAA
* * ** *
19592357 GCTTAAGGGACCACTATATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAA
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * *
19592422 ATGTGCCTAAACCCACGTACCACCCTATCTATCCACGGCTTGCCCATCCCGTCTCTCTGACCGAC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * * * *
19592487 GTAGTGCTCGCCCGTCCGCCCGCTCGCTCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTC
131 GTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * ** * * *
19592552 CCAATCTAAGATCGGACCAGACCGAGGGTTGTAGTAGTAGGATCGACAGCACGCAGAGGGGGACC
196 CCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAAGCAGAGGGGGACC
** * * * * *
19592617 CGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGGCGGCTGAGCACCTGCACGTTCGTTTCGT
261 CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
*
19592682 GGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
326 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
* * * *
19592747 ATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCTGCATTTT
391 ATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * * * * *
19592812 TCTTCGTCGGGGCACCATCGTCGGAGCATCGTAGGAGAACCTCACTGGCGGCATTGGGGTTTCGA
456 TCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * * ** *
19592877 TGATCAGGGGGACC-GGGGGGTGTGCGCACATGATGTGTAATGGGTGCTGGTACTTGACCCTTAT
521 CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
19592941 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTT
586 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
19593006 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
651 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * *
19593071 AATCTTGTTCACTTCGAGTTTTTAGCTGAATTGTCTTGTGCAAGCCAACAAAAATACAAGGATCA
716 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * *
19593136 CGTCTACCAAGTTTGGGGCCAAAACTCCTACCGAAAAAATTTTAAAAAATCTCGCACCGCAAAAA
781 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
** * * * *
19593201 GTTTTGAAAATCGTGAAAAATAGAAAACGAGCCATCTTGTCATGAAACTTCACGTGAAG
846 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
19593260 GCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * *
19593325 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCTGTGTCTCTAGCCGGC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * *
19593390 GTAGTGCCTGCCCGCCCACCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTC
131 GTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** * * * * * *
19593455 CCAGTCTAAGATCAGACTGGATCAAGGGTTGCGACAGCAGGATC-AGCAGCACGCAAAGGGGGAC
196 CCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCAAGCAGAGGGGGAC
* *
19593519 CCGATCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCG
260 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * *
19593584 TGGGTTGACCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
325 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
* * * *
19593649 GATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTT
390 GATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * * * * *
19593714 TTCTTCATCGGGGCACCATCGCCGGAGCATCGTAGGAGAACCTGACTGGCGGTATTGGGGTTTCG
455 TTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * * *
19593779 ATGATCAGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTA
520 ACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
**
19593844 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTGCACCCCCTTAAAGAGCATTTGAGATTT
585 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
19593909 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
650 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
19593974 AAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAACAAAAATACAAGGATC
715 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
19594039 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAATAAATTTTAAAAAATCCCGAACCGTAAA
780 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA-AAATTTTAAAAAATCCCGAACCGTAAA
* ** * *
19594103 AAGTTTCAAAAATAAAAAAAAATAGAAAACGAGCCGTCTTGCCATGAAACTTCACGTGAAT
844 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
19594164 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * *
19594229 ATGTACCTAAACCCACCTACTACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * * **
19594294 GTAGTGCCCGCTGGCCCACCCGCCCGTCCGCCCGCTTGTTTCATCGGTTGGTTTAGGCTTA-TAA
131 GTAGTGCCCGCTCGCCCA------C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * ** ** * * * * **
19594358 GTTCATTCCCAGTCTAAGATCGGGCCAAACTAAGGGTTGAGGCAGCAAGATCGGCATCACTCAGA
188 GTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAAGCAGA
* * * * * * * *
19594423 GGGGGACCCGGTCGATCCTCGGCTTGCTCATCCTGCCCCTCTGGCCAGCTCAGCGCCCGCATGAT
253 GGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
19594488 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-AGAGTTCATTCC
318 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCC
* * * * *
19594552 CAGTCAAAGATCGGA-TCGGACCGTGTGTTGCGGCAGCACATGCTGGGCTCGTGCTTGTGCTGGT
382 CAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* *
19594616 GCCGCATTTTTCTTCGTCGGGGCA-CA---T-----CA-C--CGGAGAACCTGATCGGCGGCATT
446 GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATT
* *
19594669 GGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACT
511 GGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
19594733 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAGGAGCAT
576 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
19594798 TTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AATGGGGACACTTTTTTCAA
641 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
19594862 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
706 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* **
19594927 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTTGA
771 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* * *
19594992 ACCGCAAAAAGTTTCAAAAATCA-AAAAACATAGAAAACGAGCCGTCTTGCCATGAAACTTCACG
836 ACCGTAAAAAGTTTCAAAAATCATGAAAA-ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
19595056 TGAAG
900 TGAAG
19595061 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * *
19595126 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCTGTGTCTCTGGCCGGC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * *
19595191 GTAGTGCCCGCTCGCCCACCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTC
131 GTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * ** * * *
19595256 CCAGTCTAAGATTGCACTGGACCGAGGGTTATGGCAGTAGGATCGACAGCAAGTAGAGGTGGACC
196 CCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAAGCAGAGGGGGACC
* ** * * *
19595321 CGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAACTGAGCGCCCGCATGCTCATTTTGT
261 CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* *
19595386 AGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAATCCCAGTCTAAG
326 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
* * *
19595451 ATCGGACTGGGCTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
391 ATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * *
19595516 TCTTCGTCGAGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGG-ATTGGGGTTCTGG
456 TCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * *
19595580 CGATCGGGGGGGCCGGGGGGGTGTGCGCATATGATGTACGATGGGTGCTAGTACTTGGCCCTTAT
521 CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
19595645 ATTGGCCCCCGATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
586 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
19595710 ACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGGAATGGGGACACTTTTTTCAAATGGTCACAA
651 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * * *
19595775 AATCTTGTATACTTCGAGTTTTCAGCTGAATGTTTTTGTACATGCCAAAAAAAATACAAGGATCA
716 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * *
19595840 TGTCTACCAAGTATGGGGCCAAAACCCCATCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
781 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
*
19595905 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTGCACGTGAAG
846 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* ***
19595964 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACATAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * *
19596029 ATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGTCGAC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * * *
19596094 GTAATG--C-C-CGCCCACCCGCTCGTTCGTTTCATCGGTTAGCTTAGGCATATGGAGTTCATTC
131 GTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * **
19596155 CCAGTCTAAGATTGGATCGAACTGAGGGTTGCGGTAGCAAGATTGGTAGCACA-CAGAGGGGGAC
196 CCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA-AGCAGAGGGGGAC
* ** * * * ** *
19596219 CCGACCGATGGCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGTACAATCGGTTCG
260 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * * *
19596284 TGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATGCGGAGTTCATTCTCAGTCTAA
325 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
*
19596349 GATTGGA-TCGGACCGAGGGTTGCGGCAGCACATGCT--G-T-----A--------T------TT
390 GATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * *
19596391 TTT-TTCGTCGGGGCACCATCGCCGGAGCATCGTCAGG-GAACCTGACCGGCGGCATTAGGGTTC
454 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCATC-GGAGAACCTGACCGACGGCATTGGGGTTC
* * * * *
19596454 CAACGATCGAGGGGGTCGGGGGGGTAT-CGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCT
518 CGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
** *
19596518 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCTGACCCCCTTAAAGAGTATTTGAGAT
583 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * *
19596583 TTTACAGGTTCGCTGCTAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
648 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
19596648 CAAAATCTTGTATACTTCAAGTTTTTAGCTG-ATTTTTTTGTGCATGCCAACAAAAATACAAGGA
713 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
** * * **
19596712 TCACGTCTATAAAGTTTGGCGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAA
778 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAA
19596777 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
843 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
19596839 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * **
19596904 ATGTGCCTAAACCCACCAACCTCCCCATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCCGGC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
** * * *
19596969 GTAGTGCCCGCTCGCCCGTCCACCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTC
131 GTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * ** * * * *
19597034 TCAGTCTAAGATCGGACCAAATCGAGGGTTGCGGTAGCAGGATCAACAGCACGCAGAGGGGGACC
196 CCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAAGCAGAGGGGGACC
* * * * ** *
19597099 CGATCGATCCCCGACTTACGCATCCCGCCCCTCTGGTCGGCTGAACGCATGCACGCTCGTTTCAT
261 CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* *
19597164 GGGTTGACATAGGCATACGGAGTTCATT-CC---C--A--AT-CTAAG---A-T--C-G-----G
326 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
* *
19597208 AT---A--GGACCGAGGGTTGCGGCAGCACAT-CTTGGGCTTGGGCATGTGCTGGTGCTGCATTT
391 ATCGGACTGGACCGAGGGTTGCGGCAGCACATGC-TGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * * * * *
19597267 TTCTTCGTCGGGGCACCATCGCCAGAGCATCGTTGGAGAACCTGATCGGCGCCATTGGGGTTTCG
455 TTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * * *
19597332 ACGATCGGGGGGGGC-GGGGGGCGTACGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTA
520 ACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
19597396 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTT
585 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
19597461 TACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAGA
650 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
19597526 AAATCTTGTTCACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGGCAACAAAAATACAAGGATC
715 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * * *
19597591 ACGTCTACCAAGTTTGGAGCCAAAACTCCTACCGAAAAAATTTTAAAAAATCTCGCACCGCAAAA
780 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* *
19597656 A-TTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
845 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
19597715 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * *
19597780 ATGTACCTAAACCCATCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCTGAC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
*** * * * *
19597845 GTAGTGCCCGCTCGCCTGTCCGCCCGCTCGTTTCATCGGTTGCCTTAGGCATGCAGAGTTCATTC
131 GTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
*** * * * *
19597910 CCAGTCTAAGATCAAATCC-GACCGAGGGATGCGGCAGTAGGATCTG-TAGCACA-CAGAGAGGG
196 CCAGTCTAAGATTGGA-CCGGACCGAGGGTTGCGGCAGCAGGATC-GACAGCA-AGCAGAGGGGG
* * * * ** * * *
19597972 ACTCGACCGATCCCTGTCTTGCGCATCTTGCCCCTCTGGTCGACTGAGTGCCCGCACGCTCGTTT
258 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * * * *
19598037 CGTTGGTTGACATAGGGATACAGAGTTCATTCCTAGTCTAAGCATAC-AGAGTTCATTCCTAGTC
323 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTC
** ** * * * * *
19598101 TAAGATCAAACCAGACCGACGGTTGCGGTAACACATGCTGGGCTCGGGCATGTACTGGTGTCGCA
387 TAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* *
19598166 TTTTTCTTCGTCGGGGCACCA---T-----CA-C--CGGAGAACCTGACCGACGACATTAGGGTT
452 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTT
* *
19598220 TCGACGATCGGGGGGGCCGGCAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
517 CCGACGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
19598285 CTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAG
581 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * *
19598350 ATTTTACAAGTTTGCTACCAGTACCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGT
646 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
19598415 CACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTGTTTT-TACATGCCAACAAAAATACAA
711 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTGTGCATGCCAACAAAAATACAA
* * * * * *
19598479 GGATCACGTCTACCAAGTTTGGGGCCAAAACACTTTCCAAAAAAATTTTAAAAAATTCTGAATCG
775 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
** * * *
19598544 TAAAAAGTTTTGAAAATCCTAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAG
840 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * * *
19598609 GCTTGAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGTAGAAAAAAGAA
1 GCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* *
19598673 GATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCACATCCCGTCTCTC-GGCCGG
65 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* ** * *
19598737 CGTAGTG--C-CT-GCCCGCCAACCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATT
130 CGTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* ** ** * * * *
19598798 CTCAGTCTAAGATCAGACCGGACTAAGGCTTGTGGCAACAGGATCGACAGCACGCAGAGGGGGAC
195 CCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAAGCAGAGGGGGAC
* * ** * * *
19598863 CCGGTTGATCCCCGATTTGTGCATCCCGCCCCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCG
260 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * * *
19598928 TTGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAATCTAA
325 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
* * * * *
19598993 GATCGGACTGGACCGAGGGTTACGGTAGCACATGCTGGGCTTGGGCATGTGTTGGTGCCACATTT
390 GATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * **
19599058 TTCTTCGTTGAGCCACCATCGTCGGAGCATC-GCTGGAGAACCTGACCGACGGCATTAAGGTTCC
455 TTCTTCGTCGGGGCACCATCGTCGGAGCATCATC-GGAGAACCTGACCGACGGCATTGGGGTTCC
* * ** * * *
19599122 GGCAATCGGGGGGGCCTAGGGGGTGTGTGCACATGATCTGCGATGGGTGCTGGTACTTAGCCCTT
519 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
19599187 ATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTAGATT
584 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
19599252 TTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAATGGTCAC
649 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
*
19599317 AAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTGTTTTT-TGCATGCCAACAAAAATACAAGGA
714 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * *
19599381 TCACGTCTACCAAGCTTGGGGTCAAAACTCCTTTCGAAAAAATTTGAAAAAATCTCGAACCG-AA
778 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAA
* * *
19599445 AAAGTTTCAAAAATCGTGAAAAAGACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
843 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
19599507 GCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGCAGAAACATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
** *
19599572 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAAGCATCCCGTCTCTCTGGCCAGC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * * *
19599637 GTAGTGTCCGCCCGACCATCCGCCCGCTCGTTTCGTCGGTTGCCTTAGGCATACAGAGTTCATTC
131 GTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * **
19599702 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATTGGCAGCATGCAGAGGGAAACC
196 CCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAAGCAGAGGGGGACC
* * * * *
19599767 CGACCGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCGGTTGAGCGCCTGCACGCTCGTTTCGT
261 CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* *
19599832 TGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-AT-CG--G---------A--C----
326 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
* * **
19599878 A--GGACT-----GAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGGGCCATATTTT
391 ATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* ** * * * *
19599936 TCCTCACCGGGGCACCATCGCCGAAGCATCGTCGGAGAACCTAACCGACGGCATTGGGGTTCCGA
456 TCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * * *
19600001 CGATCGGGTGGCCCAGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
521 CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * * * *
19600066 GTTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCACTCCCCCTTAAAGGGCATTTAAGATTTT
586 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
19600131 ACAGGTTTGCTGCCAGTAGGCATTAAATTGTCTGAAATGGGGACACTTTTTTTCAAATGGTGACA
651 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACA
* * *
19600196 AAATCTTGTACACTTCGAGTTTTTGGCTGAATTCTTTTGTGCATGCCAAAAAAAATACAAGGATC
715 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * **
19600261 ACGTCTACCAAGTTTGGGG-CAAAACTCCTTTCGAAAAAATTTCAAAAAATCTTGAACCGTAAAA
780 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* * * * *
19600325 TGTTTCAAAATTCGTGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACATGAAG
845 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
19600385 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * * * *
19600450 ATGTGCCTAAATCCACCTACCACCCTATCGATACATGACTTGTGCATCCCTTCTCTCTGGCCGAC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * *
19600515 ATACTGCCCGCCCGCTCGCCCACCCACCCGCCGACCTGCTCGCCCGTTCATTTTGTCGTTTGGCT
131 GTA--G--TGCCCGCTCG----CCCACCCG-C--CC-GCT----CG----TTTCGTCGGTTGGCT
* * * * * * * *
19600580 TAGGCTTACGGAGTTCATCCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGGTAGCAGGATCA
176 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCG
* * * * * * * *
19600645 ACAGCATGTAAAGGGGGACCCAACCGATCCCCGACTTGGGCATCCCGCCCCTCTGGCCGACTGAG
241 ACAGCAAGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
19600710 CGCTCGCACG-TCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCAAGCATATGT
306 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT----C-TA---
*
19600774 AGTTCATTTCCAGTCTAAAGCATACGGAGTTCGATTCCCAGTCTAAGATCGGATCGGGACCAAGA
363 AG--CA--T--A--C----G---A---AGTTC-ATTCCCAGTCTAAGATCGGA-C-TG-----G-
* * * * * *
19600839 ACCGAGGGTTGCGACAGCCACATGCTGGGGCTTGGGCATGTGCTAGTGTCACATTTTTTGTTACG
401 ACCGAGGGTTGCGGCAG-CACATGCT-GGGCTCGGGCATGTGCTGGTGCCGCA-TTTTTCTT-CG
* * * *
19600904 TCAGGGGCGCCATCGCCGGTAAGCCATCATCGGAGAACCTAACCGACGGGCA-TGAGGTTCCGAC
462 TC-GGGGCACCATCGTCGG--AG-CATCATCGGAGAACCTGACCGAC-GGCATTGGGGTTCCGAC
* * *
19600968 GATC--GGGGG-C-GGGGGGTGTGGGCACTATGATGTGCGATAGGTACTGGTAACCTTGGCCCTT
522 GATCGGGGGGGCCGGGGGGGTGTGCGCAC-ATGATGTGCGATGGGTGCTGGT-A-CTTGGCCCTT
* * *
19601029 ATATTGGCCCTCTATCCCTCATCAAACCTTGAGGAAACTCACACCCCCTTAAAGAAGTATTTGAG
584 ATATTGGCCCCCTATCCCTCATCAAACCTCGA-G-AACTCACACCCCCTTAAAG-AGCATTTGAG
*
19601094 AATTTACAGGTTTGCTGCCAG--GCCATTAAAGTGGTCTGAAAT-GGGACACTTTTTTTCAATAT
646 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT-GTCTGAAATGGGGACAC-TTTTTTCAA-AT
*
19601156 -GTCACAAAATCTTGTACCACTTCGAGTTTTTAGCTGAATTCTTTTTGTGCATGCCAAAAAAAAT
708 GGTCACAAAATCTTGTA-CACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAAT
* ** * * * *
19601220 ACAAGGATCACATCTACCAACGTTT-TAGCCAAAACTCCTTCCAAAAAAATTTTACAAAATGCTG
771 ACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
*
19601284 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACG
835 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
19601349 TGAAG
900 TGAAG
* *
19601354 GCTTAAGGG-CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * *
19601418 ATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGTCGGC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * *
19601483 GTA------G-T-GCCCACCCGTCCGCTTGTTTCGTCGATTGGCTTAGGCATACGAAGTTCATTC
131 GTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * *
19601540 CCAGTTTAAGATTGGATCAGATCGAGGGATGCGGCAGCAGGATCTG-CAGCACA-CAGAGAGGGA
196 CCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATC-GACAGCA-AGCAGAGGGGGA
* * * * * * * * *
19601603 CCC-AGCCGATCCTCGTCTTACGCATCCCGCCCCTCTGGTCAGCTGAGTGCACGCACGCTTGTTT
259 CCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * *
19601667 CGTGGGTTGACTTAGGCATAAGGAGTTCATTCTCAATCTAAGCATA-GGAGTTCATTCCCAGTCT
323 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCT
* *
19601731 AAGATCGGAATGGACCGAGGGTTGCGGCAGCACAT-CTTGGGCTCGGGCATGTGCTGGTGCCGTA
388 AAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGC-TGGGCTCGGGCATGTGCTGGTGCCGCA
* *
19601795 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGATCGACGGCATTGGGGTT
452 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTT
* *
19601860 CCGACGATC-GGGGGGCCGGGGGGTGTGTACGTACATGATGTGCGATGGGTGCTGGTACTTGGCC
517 CCGACGATCGGGGGGGCCGGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * * *
19601924 CTTATATTGGCCCCCTATCCCTCATCAAATCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAC
581 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
19601989 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGG
646 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
19602054 GACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAG
711 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * ** *
19602119 GATCACGTCTACCAAGTTTGGGGCCAAAGCTCCTTCCGACAAAATTTTAAAAAATCCCCTACCAT
776 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
* * *
19602184 AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAG
841 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
19602248 GCTTAAGGGACCATTGTATGAATGTACAAGACATAAAAATGGCATTGGCATGGAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
*
19602313 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGG
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * ** *
19602378 GTAGTGTCCGCCCGTCCGTCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
131 GTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** * * * * *
19602443 CCAGTCTAAGATCAGATCAGACCGAAGGG-TGCAGCAGTAGGATC-AGCAGCACA-CAGAGAGGG
196 CCAGTCTAAGATTGGACCGGACCG-AGGGTTGCGGCAGCAGGATCGA-CAGCA-AGCAGAGGGGG
* * * * * **
19602505 ACCCGATCGATCCTCGACTTACGCATCCTGCCCCTCCGATCGGCTGAGCGCCCGCACGCTCGTTT
258 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * *
19602570 CGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCC
323 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCT
* * ** * * * * *
19602635 AAGATTGAACCAGACCGATGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTAT
388 AAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
*
19602700 TTTTCTTCGTCGGGGCACCA---T-----CA-C--CGGAGAACCTGACCGACGACATTGGGGTTC
453 TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTC
19602754 CGACGATC-GGGGGGCCGGCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
518 CGACGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * *
19602818 TTATATTGGCCCCCTATTCCTCTTCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
582 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * * **
19602883 -TTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACGTTTTTTTCAAATGGTC
647 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
19602947 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAAAAAAAATACAAGG
712 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* **
19603011 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACA
777 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTA
* * *
19603076 AAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAG
842 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
19603139 GCTTAAAGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCATTGGCACT-TAGAAATATGAA
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAA
* * *
19603203 GATGTCCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGA
65 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * * *
19603268 CATAGTGCCTG-TCTGCCCA----CCCGTTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCAT
130 CGTAGTGCCCGCTC-GCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * ** * * * ** * ** * * *
19603328 TCTCAGTCTCAGATTAGACTTGATCGAGGGTTACGGAAATAGGACCGGTAGGATGCAGAGGGGTA
194 TCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAAGCAGAGGGGGA
* * * ** *
19603393 CCCGACCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGATTGAGCACCCGCACGCTCGTTTC
259 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* *
19603458 GTGGGTTGACTTAGGCATACGAAGTTCATTCCCATTCTAAGCATACGAAGTTCATTCCCAGTCTA
324 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTA
* * *
19603523 AGATCAGACTGGACCGAAGGTTGTGGCAGCACAT-CTTGGGCTCGGGCATGTGCTGGTGCCGCAT
389 AGATCGGACTGGACCGAGGGTTGCGGCAGCACATGC-TGGGCTCGGGCATGTGCTGGTGCCGCAT
* *
19603587 TTTTCTTCGTCGGGCCACCA---TC---G---C--CGGAGAACCTGACCGACGGCATTAGGGTTC
453 TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTC
* ** * *
19603641 CGACAATCGAAGGGG-CTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTAGGCCCT
518 CGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * *
19603705 TATATTGGCCCCCTATCCCTCATCAAACCCCGATAGCTCACACCCCCTTAAAGAGCATTTGAGAT
583 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
19603770 TTTATAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
648 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
19603835 CAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGGGCATGCCAAAAAAAATACAAGGA
713 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * *
19603900 TCACGTCTACCAAGTTTTGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATCCTGAACCG-AA
778 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAA
* *
19603964 AAAGTTTCAAAAATCGTG-AAAATAAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAG
843 AAAGTTTCAAAAATCATGAAAAAT-AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
19604026 GCTTAAGGGACCATTGTATGGATTCACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* ** * *
19604091 ATGTGCCTAAACCCGCCTACCACCCTATCGATCCACGGCTTAAGCATCCCATCTCTCTGGCCGAC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * *
19604156 GTAGTG--C-C-CGCCCA--------CTCGTTTTGTCGATTGGCTTAGGCATACGGAGCTCATTC
131 GTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * *
19604209 CCAATCTAAGATTGGACCGGACCAAGGGTTGTGGCAGCAGGATTGGCAGCATA-CAGAGGGGGAC
196 CCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA-AGCAGAGGGGGAC
* * * * * *
19604273 CCGATCGATCCTCGGCTTGTGCATCTCGCCCCTCTGGCCAGTTGAGCGCCCGCACGCTCGTTTTG
260 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
19604338 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---A---CC-G-----
325 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
* * *
19604387 GA-C---C---A---AGGGTTGCGACAGCACATGCTGGGCTCGAGCATGAGCTGGTGCCGCATTT
390 GATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * * ** *
19604442 TTCTTTGCCAGGGCACCATCATCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTTCG
455 TTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCG
** *
19604507 GTGAT-TGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
520 ACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * * *
19604570 TATTGGCCCCCTATGCCTCATCAAACCTCGGGAACTCACTA-CCCCTTAAAGGGCATTTCAGATT
585 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-ACCCCCTTAAAGAGCATTTGAGATT
* *
19604634 TTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTGAC
649 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
*
19604699 AAAATCTTGTACAATTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
714 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * * **
19604764 CATGTCTACCAAGTTTGGGG-CAAAACTCCTTTCAAAAAAATTTCAAAAAATCTTGAACCGTAAA
779 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAA
* *
19604828 ATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
844 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
19604889 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCGTGCAGAAATATGACG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
19604954 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-G-
* * ** * * * * *
19605019 GCAGTACCTGCCCGCCCGCCTGCCCACCCACTCATTTCATCAGTTGGCTTAGGCATACGGAGTTC
129 GC-GTA-GTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* *** * * * * * *
19605084 ATCCCCAGTCTAAGATCAAACCGGACCGAAGGTTGCGGCAGTAGGATC-AGTAGCATGTAAAGGG
192 ATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCAAGCAGAGGG
* ** * * *
19605148 GGACCCGGTCGATCCCCAACTTAG-GCATCCTGCCCCTCTGACCGGCTGAGCGCCCGCACGCTCT
256 GGACCCGATCGATCCCCGGCTT-GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
** * * *
19605212 TTTCGTGGGTTGACTTAGGCATAAAGAGTTCATTCCTAGTCTAAGCACACGGAGTTCATTCCCAG
320 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
* ** * *
19605277 TCTAAGATCGGA-TCGGACCGAGGGTTACAACAACACATGCTGGGCTCGGGCATGTACTGGTGCC
385 TCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
** * * * * * * ** * *
19605341 ATATTTTTCATCGTCGGGGCACCATCGCCGTAGCATCGTCGGGGAACCTGATCGGTGGAATTCGG
449 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGG
*
19605406 GTTTCGACGATCGGGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
514 GTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
19605470 CCCCTATATTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
579 -CCC-----T------TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
19605535 AAAGACCATTTTAGATTTTATAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
632 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
** ** ** * * * ***
19605600 TTTTTTCAAACCCG-C-C---CGCCCG--CACGTTC--GTTTTGTGGGTTGACTTAGGCATACGG
697 TTTTTTCAAA-TGGTCACAAAATCTTGTACAC-TTCGAGTTTT-T-AGCTGAATT-----T-TTT
* * * * ** * * * * *
19605656 AGTTCATCCCCAGTCTAAGCATGC--GGAGTTCA-TTCT--C-AGTCTATGATCGGACCAGACCG
752 TGTGCAT-GCCA-AC-AAAAATACAAGGA--TCACGTCTACCAAGT-T-TG---GGGCCAAAAC-
*** * * * * ** ** ** ** **** *
19605715 AGGGTTGCGACAGCACATGCTGGGCTCATGCATGTGCTGGTGCCGT-ATTTTTCTTCCCTGGGGC
806 -TCCTTCCGA-A-AAAAT--T----TTA-AAAAAT-CCCGAACCGTAAAAAGT-TT--C-----A
** * * ** * * ** * ***** * **
19605779 ACCATCGTCGAAGAACCT-GACCGACGACATTAGGGTTCCGGCGATCG-GGGGGC-CGGGGGG
852 AAAATCAT-GAA-AA-ATAGA-AAACG--AGT--CG-TCTTGCCAT-GAAACTTCACGTGAAG
* * * ** ** * * * * * *
19605839 GCGT--GCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-GCCT
1 GCTTAAG-GGAC--CAT-TGT-ATGAAT--T--TAC-AAGCCATAAAAATGG---CAT-TGGCAT
* ** ** ** * * * ** *
19605901 -CATCAAACCTCG-AGAACT-CACT---CCC-CCTTAAAAGGCATTTCAGATTTTACAGGTTTGC
52 GCA-GAAATAT-GAAGATGTGC-CTAAACCCACC-TACCA-CCCTATC-GA-TCCAC-GGCTTGC
* * * * * * * ** * **** *** ** ***
19605959 TGCCAGT--AGTCAT-TAAATTGTCTG-ATATGGGGACACTTTTTTCAAATG-GTGACAAAATCT
109 -G-CA-TCCCGTC-TCT--CTGGCCGGCGTA-GTGCCCGC-TCGCCCACCCGCCCG-C-TCGT-T
** * * ***** * * * * * *
19606019 T-GTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCA-TGCCA-ACAAAAATACAAGGATCACG
163 TCGT-CGGTT-G-G-CTTAGGC---A-TACGGAGTTCATTCCCAGTCTAAGAT---TGGA-C-CG
* * * * ** *** * * * * * *** * *
19606081 TCTACC-AAGTTTGGGGCAAAATTCTTTTCAAAAAAATTTCAA-AAAATCTCGAACCGCAAAAT-
215 --GACCGAGGGTTGCGGCAGCA---GGATC---GACA--GCAAGCAGA-GGGGGACC-C--GATC
** **** * * ** ** * * * * * ***
19606143 G-TTTCAAAATTCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
266 GATCCCCGGCTT-GCG---CAT----CCCG-CCCCTCTGGCC--G--GC-TGA-GCGCCCGC---
* * * ** * * * ** * * ** * *
19606207 AGGGAC-CATTGT-ATGAATTTAC-AAGCCATA-AAAATGGCATTGGCA-TGC--AGAAATATGA
313 A-CG-CTCGTT-TCGTGGGTTGACTTAGGCATACGGAGT-TCATTCCCAGT-CTAAG-CATACGA
** * ** * ** ** * * * *
19606265 AGATGTGCCTAAACCCA-CCTACCACCCTA-TCAATCC-ACGGCTTGC-GCATCCCGT-CT---C
372 AG-T-T--C-ATTCCCAGTCTAAGATCGGACTGGA-CCGA-GGGTTGCGGCAGCACATGCTGGGC
* * ** * *
19606322 TCTGGCATATGTAGTGCCCGCCCGCCTGCCCGC-CCTCTCATTTCGTCGGTTGGCTTAGGCAT--
430 TCGGGC--A--T-GTG-CTG---G--TG-CCGCATTTTTC--TTCGTCGG--GGC--A-CCATCG
* * * *** * * * * ****
19606384 ACAGAG-TTCATC-CCCAATCTAAGATCGGACCGG-ACTGAGGGTTGCAGTAGCAGGATCAACAG
476 TCGGAGCATCATCGGAGAACCT--GA-CCGA-CGGCATTG-GGGTT-CCG-A-C--GATCGGGGG
** **** * * * *** * * ***
19606446 CACAC-AAAAGGAG-AC-C-CGGTCGATCCCCGACTTGGGCATCCCGCCCCTCTGGCCGGC-TA-
531 GGC-CGGGGGGGTGTGCGCAC-AT-GATGTGCGA--TGGG--TGCTGGTACT-TGGCC--CTTAT
** ** * *** * * * ** * ** * *
19606505 A--GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCTCAGTCAAAGAT
586 ATTG-GCCC-C-CTATC-CCTCAT---CAAACCT---C-GA-GAA-CTCACACCCCCTTAAAGAG
* **** * * * ** * **
19606568 CA---GACATGACCCAAGGTTGTGGTAGCACATGCTGGGC--TCGAGCATGTGCTG--GTGCCG-
638 CATTTGAGATTTTAC-AGGTT-TGCT-GC-CA-G-TAGCCATTAAAG--TGT-CTGAAATGGGGA
* * **** * * * * * *** * * * *
19606625 TATTTTTCTTCGCCGGGGCAC--CATCGTCGGAGCATCGTCGGAGAACCTGACCGCCGGCATTGG
694 CACTTTT-TTCAAATGGTCACAAAATC-TTGTA-CA-CTTC-GAG-TTTTTA--G-CTGAATT-T
** ** ******** * * * ** * *
19606688 GGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACGTGATGTGCGATGGGT-GCTAGTACTT-
749 TTTTGTG-C-AT-------GCCAACAAAAAT--ACAAG-GA--T-C-ACGTCTACCAAGT--TTG
* ** * * ** ** ** * * ** *
19606751 GGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTGGAGAACTCACAC-CCCCTTAAAAAGCAT
796 GGGCC--A-A---AACTCCT-TCC--GAAAAAATTTTAAAAAATC-C-CGAACCGTAAAAAG--T
* *** *** * * *** * **
19606815 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA--AGT-GTC-TAAAATGGGGACACTTTTC
848 TTCA-AAAAT-CA----TG--AAAAATAG--A-AAACGAGTCGTCTTGCCAT---GAAACTTCAC
*
19606876 -TCAAACG
899 GT-GAA-G
** * * * * * * *
19606883 GTCACAAAATCTTGTACAATTTGGGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT-AC
1 G---CTTAA---GGGACCA-TT--G----TA--TGAA-----TT-TACAAGCC-ATAAAAATGGC
* *** ** * * * * * **** ** ** ***
19606947 A-AGG-AT-CAGGTCTACCAA-ATTTGGGGC-AAA-ACACCTTTCAAAAAAAT-TTTAAAAAATC
44 ATTGGCATGCAGAAATATGAAGA--TGTGCCTAAACCCACC-TACCACCCTATCGAT-CCACGGC
* * **** ***** **** * * ** *
19607005 CTGAACTGTAAAAAGAT-TCAAAAATCAT-G-AAAAATAGAAAACGAGTCG--TA-TTG--CGAT
105 TTG--C-GCATCCCG-TCTC-----TC-TGGCCGGCGTAGTGCCCG-CTCGCCCACCCGCCCGCT
* * ** * * ** * * * * * *
19607062 -GAAACTTC-ACGTGAAGGCTTAAGGGACCAT-TGTA-TGAATTTACAAGCCATAAAAATGGCAT
159 CG---TTTCGTCG-GTTGGCTT-A-GG--CATACGGAGTTCA-TTCCCAGTC-TAAGATTGG-AC
* *** ** * * * * ****** * *
19607123 TGGCACAC-AGAAAT-ATGAAG-ATG-T-GCCTA--AACCCA-CCTACCACCCTATCGATCCACG
213 CGG-AC-CGAGGGTTGCGGCAGCAGGATCGAC-AGCAA-GCAGAGGGGGACCCGATCGATCCCCG
** * * * *
19607180 GCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCGCCCGCTCGTTTCATC
274 GCTTGCGCATCCCGCCCCTCTGGCCGGC-T-GAG--CGCCCG--CA------CGCTCGTTTCGTG
** * * * *
19607245 AATT-AGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTT-GTAGC
327 GGTTGA-CTTAGGCATACGGAGTTCATTCCCAGTCTAAG--C--AT---AC-GA-AGTTCAT-TC
* * * * *** ** * * * * ** **
19607308 AGCAGGATCGACAGCA-CGTAGTGGGGGACCCGACCAATCCCCGACTTGCACATCCCGCCCCTTT
381 -CCA-G-TCTA-AG-ATCGGACT---GGA-CCGA-GGGT-TGCGGC-AGCACATGCTG-GGCTCG
* * * * ** * * * * *
19607372 GGC-CG-ACTGAGCGCC-CATACGCTCGTTTCAT-GT-GTTG-ACTTAGGCATACAGAG-TTCAT
433 GGCATGTGCTG-GTGCCGCAT----T--TTTCTTCGTCGGGGCAC-CA-TCGT-CGGAGCATCA-
** * * * *** * * * ** * * * *
19607430 TCCCAGTCTAAGCAT-ACGGA-GTTCATTCCCAG-T-CTAAGTTCGGACTGGACC-GAGGGTTGC
487 TCGGAG---AA-CCTGACCGACG-GCATT-GGGGTTCCGACGATCGG-GGGGGCCGGGGGGGTGT
* * * * *** ** * *
19607490 GACAGCACATGCTGGGCTCAGGCATGTGGTGCAGCCGCA-TT-TTTCTTCAT-CGGGGCACC-AT
545 G-C-GCACATGATGTG--C--G-ATG-GGTGCTG--GTACTTGGCCCTT-ATATTGGCCCCCTAT
* * * * ** * *** * ** * ****
19607551 -CGTCA-GAGCATCGC-CAGAGAACCTAACCGACGGCATTGGGGTTCCGGCGATCGGGGGAGCCG
599 CCCTCATCA--AAC-CTC-GAGAA-CTCA-C-ACCCCCTTAAAG----AGC-AT-TTGAGATTTT
*** * * * ** * * ** *
19607613 GGGGGTGTG-TGCACATGATGTGCGATGT-GCGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
651 ACAGGTTTGCTGC-CA-G-T-AGCCAT-TAAAG-T-GT-C-T-G-----AAATGGGGACACT-T-
* *** ** * * * * **
19607676 CTTCATCAAACCTTGGGAACTCAC-ACCCCATTAAAGAGCATTTGAGATTTTA-CTG--GTTTGC
699 -TT-TTCAAA---T-GG---TCACAAAATC-TTGTACA-C-TTCGAGTTTTTAGCTGAATTTTTT
* ** * * * * ** * *
19607737 TG-CCAGTAGCC-ATTAAAGTGTCTTAAATGGGGA-CACTTTTTTCAA--AT-GGTCACAAAA-T
752 TGTGCA-T-GCCAACAAAAAT-AC---AA---GGATCACGTCTACCAAGTTTGGGGC-CAAAACT
* **** ** *** *** ** * **
19607795 CTTGTACACTTTGATTTTTTAGCTGAATTTTTTTGTGCATACC--AACAAAAATACAAGGATCAC
807 CCT-T-C-CGAAAAAATTTTA----AA--AAATCCCG-A-ACCGTAA-AAAGTTTCAAAAATCA-
* ** * **** * ** * * **
19607858 GTCTACCAAGTTTGGGGCCAAAG-C-TCCTT-CCGAAAAAATTTTAAAAAATCCCGAA-
859 -T-GA--AAAATAGAAAAC-GAGTCGT-CTTGCC-ATGAAA-CTT----CA-CGTGAAG
* ** ** ** * * * ** * * *
19607913 CCACAA-AAACTTTTG-A-AAATCGTGA-AA--AATAAAAAACG-AGTCGTCTTGCCATGAAACT
1 GCTTAAGGGACCATTGTATGAAT--TTACAAGCCATAAAAATGGCA-TTGGCATG-CA-GAAA--
* * ** *** ** * * *** * * *
19607971 TCACGTGAAGGCTTGACGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
59 T-A--TGAA-G-ATG--TG-CC--TAAACCCACCTACCA-CCCTATCGAT-CCA-CGGCTTGC-G
* *** * ** ** * *** ** ** * ** *
19608036 AAATATGAAGATGTAC-CTAAACCCACTTACCACCCTATCGATTCA-CGGTTGCGCATCCTGTCT
110 ---CATCCCG-TCT-CTCT-GGCCGGCGTAGTGCCCGCTCG-CCCACCCG-CCCGC-T-C-GTTT
** * * *** * ** * *** * ** * *
19608099 C-TCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGGTCGTTTTGTCGGTTGG-CTTAGGCAT
164 CGTC-GGTTGGCTTAG-G-CATACGGAGTTCATTCCCAGTC----T-AAGATTGGAC--CGG-A-
* * * * * * * * **
19608162 ACG-GAGTTAATTC-CCAGTCTAAGATCGA-A-CCAGACTGAAGGTTACAGCAGCAAGATCGGTA
217 CCGAG-GGT--TGCGGCAG-C-AGGATCGACAGCAAG-CAGAGGGGGAC--C--C--G-------
* * * *
19608223 GCACGTAGAGGGGGATCTGACCGATCCCCGGCTTACGCATCTCGCCCCTCCGGCCGGTTGAGCGC
263 --------------A--T---CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
** * * *
19608288 CCGCACGCTTATTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCTAGTCTAAGCATACGGAG
309 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAG
* * * *
19608353 TTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATG
374 TTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * *
19608418 TACTGGTGACGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTAACCGG
439 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGA
* *
19608483 CGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACGTGATGTGCGATGGGTGC
504 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * * * *
19608548 TGGAATTTGGCCCTTATATTGGCCTCATATCCCTCATCAAACCTCAAGAACTCACACCCCCTCAA
569 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
19608613 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGCACACTA
634 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
19608678 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTCTTTTGTGCATG-CAA
699 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* ** *
19608742 AAAGAAATACAAGGATCACGTCTACCAAGCTTT-TAGCTAAAACTCCTTCCGAAAAAATTTTAAA
764 CAA-AAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * * * * *
19608806 AAATCCCCAACGGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAA
827 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
19608871 ACTTCACGTGAAG
892 ACTTCACGTGAAG
* * * *
19608884 GCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCGTTGGCACGTAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* *
19608949 ATGTGCCTAAACCCACCTACCATCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * *
19609014 GTAGTGCCCGCCCGCCCGCCTAACCGCCTGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTC
131 GTAGTGCCCGCTCG--C-CC-ACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
** * ** **
19609079 ATTCCCAGTCTAAGATCCGACCAGACCGAGGGTTATGGCAGCAGGATCGGTAGCACA-CAGAGGG
192 ATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA-AGCAGAGGG
* * * * *
19609143 GGAACC-ACTCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCTGCACGCTCG
256 GGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* *
19609207 TTTCGTGGGTTGACTTAGGCATAAGGAATTCATTCCCAG--T---C-T---AAG---------A-
320 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
* * * *
19609253 TC--AGA-C--A-T-GACCGAGGGTTGTGGCAGCACATGCTGGACTTGGGCATGTGCCGGTGCCG
385 TCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* *
19609311 CATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCATC-GCAGGAGAACCTGACCGCCGGCATTGG
450 CATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCATC-GGAGAACCTGACCGACGGCATTGG
* * * * * * * * *
19609374 GGTTTCGACGATTGGCGGGTCAGGGCGGGTGTGCGTACATGATGTGTGATGGGTGCTGGTGCTTG
513 GGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
19609439 GCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTC
578 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
19609504 GAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
643 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * *
19609569 GGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTGTTTTGTGCATGCGAACAAAAACAC
708 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * *
19609634 AAGGATCACGTCTACCAAGTTTTGGGCCAAAACTGCTTCCGAAAAAATTTTAAAAAATCTCTAAC
773 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* * * *
19609699 TGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAACCTTCACGTGA
838 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
19609764 AG
903 AG
* *
19609766 GCTTAAGGGACCACTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * *
19609831 ATGTGCCTAAACTCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCCCTCTGGCAGAC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * *
19609896 GTAGTGCCCGC-CTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAAGGAGTTCATT
131 GTAGTGCCCGCTC-GCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
** * * * *** * ** *
19609960 CCCAGTCT-AGATCAGACCAGATCGAGGGTTACAATAGCAGAATCGGTAGCACA-TAGAGGGGGA
195 CCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA-AGCAGAGGGGGA
* * * *
19610023 TCCGATCGATCCCCGGCTTGCGCATCCCACCCTTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTC
259 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* *
19610088 GTGGGTTGATTTGGGCATACGGAGTTCATTCCCAG--T---C-T---AAG---A-T--C-G----
324 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTA
*
19610133 -GATCGG-C----CCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
389 AGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * **
19610192 TTTCTTCGTC--GG----A--GT------ATCGTCGGAGAACCTGACCGACGACATTCTGGTTCC
454 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCC
* * * *
19610243 GACAAT-GGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTAGCCCTT
519 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
** * * *
19610307 ATATTGGCCCCCTATTTCTCATCAAACCTTGAGAACTCACACTCCCTCAAAGAGCATTTGAGATT
584 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
19610372 TTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGACAC
649 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
19610437 AAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGCGCATGCCAACAAAAATACAAGGAT
714 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * * *
19610502 CACGTCTACCAACTTTTGGGCCAAAACTCCTTCTGAAAAAAATTTAAAAAATCCCAAACCGTAAA
779 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT-AA
* *
19610567 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCATGTGAAG
843 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
19610629 GCTTAAGGGACCACTGTATGAAATTACAAGCCATAAAAATGGTATTGGCATGCAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* ** * * * * *
19610694 ATGTGCCTAAACCCGCCTACCACCCTATATATCCATGACTTTCGTATCCCGTCTCTCTGGCCAGC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * *
19610759 GTAGTG--C-C-CGCCCGCCCGTCCGCTCATTTCG-CTGGTTGGCTTAGGCATACAGAGTTCATT
131 GTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTC-GGTTGGCTTAGGCATACGGAGTTCATT
** * * * * * * * *
19610819 CCCAGTCTAAGATCAGACCAGACCGAGCGTTGTGGTAGCAGGATCGACAGGACGTAGAGGGGAAC
195 CCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAAGCAGAGGGGGAC
* * * * ***
19610884 CCAACCGATCCCCGACTTGCGCATCCTG-CCCTCTGGCCAATTGAGCGCCCGCACGCTCGTTTCG
260 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
19610948 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-AGAGTTCATTCCCAGTCTA
325 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTA
* * * * * * * *
19611012 AAATCGGATTGGACCAAGGGGTGCGGTAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGAATT
389 AGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * * *
19611077 TCTCTTCGT-TGGGCTACCA---T-----CA-C--CGCAGAACCTCACCGACGGCACTGGGGTTC
454 TTTCTTCGTCGGGGC-ACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTC
* * * * *
19611130 CGGCGATCGGGGGGGCC-GGGGGGTGTGCACACATGATTTACCATGGGTGCTGGTACTTGGCCCT
518 CGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
19611194 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGTACTCACATCCCCTTAAAGAGCATTTGAGAT
583 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * * *
19611259 TTTATAGGTTTACTGCCAGTAGCTATTAAAGTGTCTGAAATGCGGACACTTTTTTCAAATGGTCA
648 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
19611324 CAAAATCTTGTACACTTCGTGTTTTTGGCTGAATTTTTTTGTGCATGTCAAC-AAAATACAAGGA
713 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * *
19611388 TCACGTCTACCAA-TTTTGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAA
778 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAA
** * *
19611452 AAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAG
843 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * **
19611514 GCTTAAGGTACCATTGTATGAATTTACAAGCCTTAAAAATGGCATTGGCACACAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * *
19611579 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCATGCGTATCCCATCTCTCTGGCCAGC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * ** *
19611644 GTAGTG--C-CT-ACCCGCCCGCCCGCTCGTTTAATCGGTTGGCTTAGGCATACAGAGTTCATTC
131 GTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** * *
19611705 CCAGTCTAAGATAAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGGAAGCAGAGGGGGACC
196 CCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAAGCAGAGGGGGACC
* * * * * *
19611770 CGGTCGATCCCCGGCTTACGCATCCCGCCCCCCTAGCCGACTGAGCGCCCGCACACTCGTTTCGT
261 CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
*
19611835 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
326 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
* * * ** * * *
19611900 ATCGGA-TCGGACAGAGGATTACGATAGCACATACTGCGCTCGGGCATGTGCTAGTGCCGCATTT
391 ATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * * *
19611964 TTCTTCATCGGGGCACCATCGCCGGAGTATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCTG
455 TTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * *
19612029 GCGATC--AGGGGCCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
520 ACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
19612092 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTT
585 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
19612157 TAGAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
650 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * * *
19612222 AAATCTTGTACACTTTGAGTTTTTAGTTGAATTGTTCTGTGCATGCGAACAAAAATACAAGGATC
715 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * * *
19612287 ACATCTACCAAGTTTTGGGCGAAAACTGCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
780 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* * *
19612352 AGTTTTAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAACCTTCACGTGAAG
845 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* ** *
19612412 GCTTAAGGGACCATTGTATGAATTTAGAAGAAATAAAAATGGCATTGGCATGCAGAAATATGTAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * *
19612477 ATATGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGGT
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * **
19612542 GTAGT--AC-C-CACCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
131 GTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** * ** * ** * * *
19612603 CCAGTCT-AGATCAGACAGGATTGAGGGTTACGATAGTAGGAT-GGCAGCACA-CAGAGGGGGAT
196 CCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA-AGCAGAGGGGGAC
* * * *
19612665 CCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTCG
260 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * * *
19612730 TGGGTTAACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAA
325 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
* *
19612795 GATCGGACCAGG-CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
390 GATCGGA-CTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
** * * * *
19612859 TTTCTTCACCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTAACCGACCGCATTGGGGTTCC
454 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCC
19612924 GACGATCGAGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
519 GACGATCG-G-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*** * *
19612988 TTATATCATCCCCCTATCCCTCATGAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
582 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * * *
19613053 TTTTATAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGAGACACTCTTTTCAAATGGTC
647 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
19613118 ACAAAATCTTGTACACTTCAAGCTTTTAGCTGAATCTTTTTGTGCATGCCAACAAAAATACAAGG
712 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * **
19613183 ATCACGTCTACTAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAATCACA
777 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTA
* *
19613248 AAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTGGCCATGAAACTTCACGTGAAG
842 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
19613311 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CATGGAAATATGA
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA--GAAATATGA
* * * * *
19613374 AGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGCTTCCGCATCCCATCTCTCTGGCCA
64 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
19613439 ACGTAGTGCCCACTCG----CCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCAT
129 GCGTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
** * ** * ** * *
19613500 TCCCAGTCTAAGATCAGATCAAACCAAGGGTTATGGCAGTAGGAT-TAGCAGCACA-CAGAGGGG
194 TCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCA-AGCAGAGGGG
* * * ** * * * *
19613563 GACCTGGTCGATCCCCGACTTGTTCATCCTGCCCCTCTAGCCGGTTGAGCGCCTGCACGCTCG-T
257 GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * *
19613627 TCTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATGAAGTACATTCCCAGT
322 TC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
** * * * * *
19613692 CTAAGATCAAACTGGACCAAGGGTTGCGG-AGCACATGTTGGGCTCGAGCATGTGCTGGAGCTGC
386 CTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * *
19613756 ATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCATC-GCTGGAGAACCTGACCGGCGACATTAGG
451 ATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCATC-GGAGAACCTGACCGACGGCATTGGG
* *
19613819 GTTCCGACGATCAGGGGGGGCC-AGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTG
514 GTTCCGACGATC-GGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
19613883 GCCCTTATATTGG-CCTCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTT
578 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
19613947 GAGATTTTACAGGTTTGCTGCTAGTAGCCGTTAAAGTGTCTAAAATGGAGACACTTTTTTCAAAT
643 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * *
19614012 TGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATCTTTTTGTGAATGCCAACAAAAATAC
708 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * *
19614077 AAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCCGAAAAAATTTTAAAAAATCTCGAAC
773 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* * *
19614142 CGTAAAAAGTTCCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCATGTGA
838 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
19614207 AG
903 AG
* * * * *
19614209 GCTTAAGGGACCATTGTCTGAATTTACAATG-CACAAAAATGGCATTGGCAGGTAGAAATATGGA
1 GCTTAAGGGACCATTGTATGAATTTACAA-GCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* * *
19614273 GATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGA
65 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * * *
19614338 TGTAGTG--C-C-CACCCACCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCGTATGGAGTTCATT
130 CGTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * ** * * * * *
19614399 CGCAGTCTAAGATCGGATCGAATCGAGGGTTATGGCAGTAGGATCGGCAGGACGCATAGGGGGAC
195 CCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAAGCAGAGGGGGAC
** * * * ** * *
19614464 CCGGCCGATCCCCGACTTGTGTATCCCGCCCCTCTGGCCGATTGAGCGCACTCACGCTCGTTTCG
260 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * * * * * * *
19614529 TGGGTTGACTTAGGCATACAGAATTCATTCCCAGTCTAGATCAGAC-AGGATTGAGGGTT-ACAA
325 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA-AGCATACGAAG-TTCA---TTCCCAG
* * * * * * * * ** * ** *
19614592 TAGTAGGATCGG-CAGCACACAGAGGGGGATCCGGTCGATCCCCGGCTTGAGCATCCCGCCCCTC
385 T-CTAAGATCGGACTGGAC-C-GA--GGGTTGCGG-C-AGCACATGC-TGGGC-T--CG-GGC-A
* *** * *
19614656 TGGCTGGCTGAGCGCACGCA-CGCTCGTTTCG-CGGGTTG-A-CTTCGGCATACGGAG-TTCATT
437 T-G-T-GCTG-GTGC-CGCATTTTTC--TTCGTCGGG--GCACCATC-G--T-CGGAGCATCA-T
** * * ** ** * *** * * * * *
19614716 CCTAG--TCTAAGCATACGG-AGTT--CTTTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCG
488 CGGAGAACCTGA-CCGACGGCA-TTGGGGTT-CC-G---ACGATCGGGGGGGCCGGGGGGGTG-T
* * * * * * * *** * *
19614776 GTAGCACATCCTAGGCTCGGGCATGTGCCGGTG-TCGTA-TT-TCTCTTCA-CCGGGGCACC-AT
545 G-CGCACAT--GATG-T-GCG-A--TG--GGTGCTGGTACTTGGCCCTT-ATATTGGCCCCCTAT
* * * * **** * *** ** * *****
19614836 -CGTCGGAGC-ATCGC-CAGAGAACCTGACTGGTGGCATTGGGGTTCCAGCGATCAGGGGGCCGG
599 CCCTC--ATCAAAC-CTC-GAGAA-CTCAC--ACCCCCTTAAAG----AGC-AT-TTGAGATTTT
*** * * * * * * * * *
19614898 GGGGGTGTGC-GCACA-T-G--ATGTGCGATGGGTACTGGTACT-TGG-CCCTTATATTGGCCCC
651 ACAGGTTTGCTGC-CAGTAGCCAT-T--AAAGTGT-CT-GAAATGGGGACACTT-T-TT----TC
** ** * ** * ** *** *** ** **
19614956 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATGGGTTTA
704 AAAT-GGTCA-CAAA-ATCTTGTA--CACTTCGAGTT-TTTAGC---TGA-ATTTT-TTTGTGCA
** ** * ** *
19615021 CTGCCAGTAGCCATTA-AA-G-T---GTCTGA--AA---TGGGG---AAACTTTTTTC----AAA
758 -TGCCAACA-AAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * ** ** * *** ** *
19615068 TGGTCAAAAAGTCTTGTACACTTCGTGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAACTA
820 T-TTTAAAAAATCCCG-A-AC--C--G----TA----AAAAGTTTCAAAAAT--CATGAAAAATA
* ** *** *
19615133 CAAGGATCACGTCTACCAAGT-TTGGGGCCA--AAACTGCTTTCA-AAAAAA
868 GAA--A--ACGAGT--C--GTCTT---GCCATGAAA---C-TTCACGTGAAG
** *** **** ** * ** * * * * *
19615181 TTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
1 GCTTAAGGGA-CC---ATTGTATGAA-TTT-ACAAGCCAT-AAAAAT-G---GC-A-TTGGCATG
* * ** *** ** * * *** *
19615246 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
53 -CA-GAAA--T-A--TGAA-G---ATGTG-CC--TAAACCCACCTACCA-CCCTATCGAT-CCA-
* * *** *** * ** ** * *** ** * * **
19615311 TGGCACATAGAAATATGAAGATGTAC-CTAAACCCACCTACCACCCTATCGATCCA-CGGCTTGC
101 CGG--C-TTG-CGCATCCCG-TCT-CTCT-GGCCGGCGTAGTGCCCGCTCG-CCCACCCGCCCGC
* * ** ** * ** * * * *
19615374 ACATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGGCCACCCGCTCGTTTCGTCGGTTGG
158 TCGTTTCGTCGGT-T-G--G-CTTAG-G--CA----TACGG--A---GTTC-ATTC-CCAG-T--
* * * * * *
19615439 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGAG-CGAGGGTTGCGGCAGCAGGA
201 C-TAAG-AT--TG-G---A---CC-G-----GA-CCG---AGGGTTG-CG------GCAGCAGGA
* * * ** *
19615503 TCGACAGGACA-CAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCATCCCTCTGGCCGGT
238 TCGACAGCA-AGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
19615567 TGAGCGCCCGCATGCTCATTTTGTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
302 TGAGCGCCCGCACGCTCGTTTCG-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * *
19615632 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCT
366 ATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * * *
19615697 CGGGCATGTGCTGGTGCTGCATTTGTCTTCGTCGGGGCACCATTGCCGGAGCATCATTGAAAAAC
431 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAAC
* *
19615762 CTGATCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCC
496 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* *
19615827 AAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACAC
561 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
19615892 CTCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAATAGCCATTAAAGTGTCTAAAATGG
626 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * *
19615957 GGACACTTTTTTCAAATGGTTATAAAATCTTGTACACTTCGTGTTTTTTGCTGAATTTTTTTATG
691 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
19616022 CAAGCCAA-AAAACATACAAGGATCACGTCAACCAAGTTTGGGGTCAAAACTCCTTCTG-AAAAA
756 CATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * **
19616085 TTTTAAAAAATCTCGAACCCT-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCACCTTG
820 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
19616149 CCATGAAACTTCACGTGTAG
885 CCATGAAACTTCACGTGAAG
* *
19616169 GCTTAAGGGACCATTGTAAGAATTTACAAGCCA-AAAAATTGGCATTGGCACGCAGAAATATGAA
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGGCATTGGCATGCAGAAATATGAA
* *
19616233 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTTTGGCCGG
65 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * ** *
19616298 CGTAGTGCCCGCCCGCTCACCCGTCCGCTCAATTCGTCGGTTGGCTTAGGCATATGGAGTTCATT
130 CGTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * ** ** * * *
19616363 TCCAATCTAATATCGGACTGGATTGAGGGTTGCAACAGTAGGATCAACAGCGCA-CAGAGGGGGA
195 CCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGC-AAGCAGAGGGGGA
* * * * * * *
19616427 CCCAACCGATCCTCGGCTTGCGTATCCCTCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTC
259 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * * *
19616492 ATGGGTTGACTTAGGCATATGGAGTTGATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
324 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTA
* ** * * * * * * *
19616557 AGATTGGACCAGAGCGAAGGTTACGGTAGCACATGCTGGGCTCGAGCATGTACTGGTGCTGCATT
389 AGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * * * * *
19616622 TTTCTTCATCGGGG---CATC-T-------TCACCGAAGAA-CTGACCGGCGACATTTGGGTTTC
454 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCC
* *
19616675 GACGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCCATGGGTGCTGGTACTTGGCCCTT
519 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
19616740 ATATTGGCCCCCTATCCCTCATCAAACCTTGACAACTCACACCCCCTTAAAGAGCATTTGAGATT
584 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * * *
19616805 TTATAGGTTTACTGCCAGTAGCCAGTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCAC
649 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
19616870 AAAATCTT-TACA-TTCG-GTTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGA
714 AAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* **
19616932 TCACGTCTACCAAGTTT-GGGCCAAAACCCCTTCCGAAAAAATTTT-AAAAATTTCGAACCGTAA
778 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAA
* * *
19616995 AAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATTAAACTTCACGTGAAC
843 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
19617057 GCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * * * *
19617122 ATGTGCCTAAACCCACCTACCATCGTATCGATCCATGGCTTGTGCATCCTGCCTCTCTGGCCGAC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * *
19617187 GTAGTG--C-C-CGCCCGCCCGCCCGCTCGTTCCATCGGTTGGCCTAGGCAAACGGAGTTCATTC
131 GTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* ** * * * * ** * *
19617248 CCAGTCTAACATCAGATCGGACCGAGTGTTACGGCAGCAAGATCGACAGCACTCGGAGTGGGACC
196 CCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAAGCAGAGGGGGACC
* ** * * * *
19617313 CGATCGATCCCTGGCTTGCGCATCTTGCACCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCAT
261 CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* * *
19617378 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATACGGAGTTCATTCCAAGTCTAAG
326 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
* * * * * * *
19617443 ATCGGATTGGACCGAGGGTTGTGGCAGCACATGCCGGGCTCAGACATGTGCTGGTGCTGCATTTG
391 ATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * * * *
19617508 TCTTCGTCGGGGCACCATCGCCGGAG-A--A-CCG-G-ACC-G---GTC-GTATTAGGGTTCC-A
456 TCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* *
19617561 GCGAT---------CGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTAGGCCCTTA
521 -CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
19617617 TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
585 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
19617682 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGGAATGGGGACACTTTTTTCAAATGGTCATA
650 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * * *
19617747 AAATCTTGTACACTTCGTGTTTTTAGCTTAATTTTTTTTTGCATGCCACCAAAAATAAAAGGATC
715 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * ** * **
19617812 ACGTATACCAATTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCACGAACCCCAAAA
780 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* *
19617877 AGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGTAG
845 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * * * *
19617937 GCTTAAGGGTCCATTATAAGAATTTACAAGCCA-AAAAATTGGCATTGGCACGTAGAAATATGAA
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGGCATTGGCATGCAGAAATATGAA
* ** * * * * *
19618001 GATGTACCTAAACAAACCTACCACCCTATCGATCCACGGCTTGTGCATCCCATCTCTTTGGTCGA
65 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * * *
19618066 CATCGTG--C-C-CGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGCTCATT
130 CGTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * ** * * * *
19618127 CCCAGTCTAAGATTGGACTGGACTGAGGGTTATGACAGCAAGATCGACAGCACGTAGAGGGGGAC
195 CCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAAGCAGAGGGGGAC
* * * *
19618192 TCGA-CGGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTC
260 CCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* *
19618256 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATAC-AGAGTTCATTCACAGTCT
324 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCT
* * * * *
19618320 AAGATCAGACTGGACCAAGGGCTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCG---
388 AAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* *
19618382 TATT-TT--T--------C-T--TC---G-----TCGGAGAACCTGACCGACGGTATTGGGGTTT
453 TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGG-TT
** * * * * *
19618425 TTG-CGATTGGGGGGACCGGGGGGGTGTGCGCACTTGATTTGCGATGGGTGCTGGTACTTGGGCC
517 CCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
19618489 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
582 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
19618554 TTTTACAGGTTTGCTGCTAGTAGCCATTAAAGAGTCTAAAATGGGGACACTTTTTTCAAATGGTC
647 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
19618619 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGG
712 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * * **
19618684 ATCACGTCTACCAAGTTTGGGACAAAAACTGCATCCGAAAAAATTTTAAAAAATCCCGAACCCCA
777 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTA
* * * * *
19618749 AAAAGTTTCAAAATTTATGAAAAATAGAAAACAAGTCGTCTTACCATGAAACTTCACGTGCAG
842 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * **
19618812 GCCTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * *
19618877 ATGTGCCTAAACCCACCTGCCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCCCTGGCCGAC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* *
19618942 GTAGTGCCCGCCCGCCCA----CCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
131 GTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** * * * ** * ** * *
19619003 CCAGTCTAAGATCAGACCGAACCGAAGGTTACGATAGCAAGATCGGTAGCACGCAGAGAGGGACC
196 CCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAAGCAGAGGGGGACC
* ** * * * * * *
19619068 TGGCCGATCCCTGGCTTGCACATCCCACCCCTC-GGTCGGATGAGCGCCCGCACGCTCGTTTCAT
261 CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* * *
19619132 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTATAAG
326 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
* *
19619197 A-C---C-AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTT
391 ATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * *
19619257 TCTTC-ACTGGGGCACGATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCG
456 TCTTCGTC-GGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* *** *
19619321 GCGATCGGGGGGGCCAGGAGGTCTTGTGCGCACATGATGTGCGATGGGAGCTGGTACTTGGCCCT
520 ACGATCGGGGGGGCC-GG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
19619386 TATATTGGCCCCCTATCCCTCATCAATCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGACAT
583 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
19619451 TTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCA
648 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
19619516 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
713 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * *
19619581 TAACGTCTACCAAGTTTGGGGTCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAGCCGTAA
778 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAA
** * * *
19619646 AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAAGAACCTTCACGTGAAG
843 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
19619708 GCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-TCGTAGAAATATGAA
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-GCAGAAATATGAA
* *
19619772 GATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGG
65 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * * * * *
19619837 CGTAGTGCCCGCCCGCCCGCCTGCACGCTCGTTTCATCGGTTGGCTTAGGCAAATGGAGTTCATT
130 CGTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* ** * * * *
19619902 CCCAGTCTAAGATTGAACTAGACCGAGGGTTGCAGCAGCAGGATAGGCAGCATGCAGAGGGGGAC
195 CCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAAGCAGAGGGGGAC
* * * * * * *
19619967 CTGATCGATTCCTGGCTTACGCATCCCGCCCCTCTGGCCGGTTGAGTGCCCGCA-GCTCGTTTCA
260 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * * *
19620031 TGGTTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTGA
325 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
* * * * *
19620096 GATCGAATTGGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCAGGTGCCACATTT
390 GATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * *
19620161 TTCTTCATCGGGGCACCA---T-----CA-C--CGGAGAACCTGACCGGCGGCATTGGGGTTCCA
455 TTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * *
19620215 ATGATCGGGGGGGCC-GAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGATACTTGGCCCTTA
520 ACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
19620279 TATT-GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTT
585 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*** *
19620343 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGCAAACATTTTTTTCAAATGGTCACA
650 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
*
19620408 AAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATC
715 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * * * * *
19620473 ATGTCTTA-AAAGTTTGGGGCCGAAATTCCTTCCAAAAAAATTTTAAAAATTCTCGAACCGTAAA
780 ACGTC-TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAA
** * *
19620537 AAGTTTTC-AAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATTAAACTTCACGTGAAG
844 AAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
19620598 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * *
19620663 ATGTGCCTAAACCCACCTACCACCCGATCGATCCATGGCTTGCGCATCCTGTCTCTCTGGCTGGT
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* *
19620728 GTAGTG--C-C-CG----CCCGCCCGCTCGTTTCGTCGGTGGGCTTAGGCATACGGATTTCATTC
131 GTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** * * * * * *
19620785 CCAGTCTAAGATCAGAGCAGACCGAGGGTTGTGGCAGCAGGTTCGGCAGCACGCAGAGGGGGACC
196 CCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAAGCAGAGGGGGACC
* * * * * * * * * * *
19620850 CAACCAATCCTCGGCTTGCGTATCCTGCCCCTATAGCCGGCTAAGCGCCCACACGCTCATTTCGT
261 CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* * *
19620915 GGGTTTACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC-AGAGTTCATT-TCAGTCTAA
326 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAA
* * ** ** * * **
19620978 GATTGGA-TCGGACCAAGGGTTATGATAGCACATGCTGGGCTCGAGCATGTGCTAGTGTTGCATT
390 GATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * *
19621042 TTTCTTTGTCGGGGCACGATCGTCGGAGCATCATCGGAGAAGCTGACCGACGGCATTGGGGTTTC
454 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCC
** * * * * *
19621107 GGTGAT--AGGGGGCC-GGGGGGCGTGCACGCATGATGTACGATGGGTGCTGGTACTTGGCCCTT
519 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
19621169 ATATTGGCCCCCTATCCCTCATCAAACGTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGACT
584 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
19621234 TTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATAGGGACACTTTTTT-AAAAGGTCAC
649 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
19621298 AAAATCTTGTACA---C---TTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAAAAGGAT
714 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* *
19621357 CATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACC-TCAA
779 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT-AA
* ** * *
19621421 AAGGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAG
843 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
19621483 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACGCAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * ** * *
19621548 ATGTGCCTAAACCCACCTACCACTCTATGGATCCACGGCTTGCTTATACCGTCTCTCTGGCCGAC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * *
19621613 GTAGTGTCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
131 GTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * *
19621678 CCAATCTAAGATCGGACCGGACCAAGGGTTGTGGTAGTAGGATCGACAGCACA-CAGAGGGGGAC
196 CCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA-AGCAGAGGGGGAC
* * ** * * * *
19621742 CCGACCGATCCCCAGCTTGCGCGA-CCTACCCTTCTGGCTGACTGAGCGCCCCCACGCTCGTTTC
260 CCGATCGATCCCCGGCTTGCGC-ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
** * * * * * *
19621806 GTCAGTTGACTTAGGCATACAGAGTTTATTCCCAGCCTAAACAGA-GAGAGTTCATTGCCAGTCT
324 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCT
* * * * *
19621870 AAGATCAGA-TAGGACCGTGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACA
388 AAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* ** * * * * *
19621934 TTTTACTTCACCGGGGCACCATCGTCGGAGCATCGTTGAAGAACCTGACCGGCGGCATCGGGGTT
452 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTT
* *
19621999 CCGAGGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG-CC
517 CCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
19622063 TTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATATGAGA
582 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
19622128 TTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGCC
647 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
19622193 ACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTCTTAG-GCATGCCAACAAAAATACAAG
712 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT-TTTGTGCATGCCAACAAAAATACAAG
* * * *
19622257 GATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTCTGAACCTT
776 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
** * *
19622322 AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAG
841 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*** * * *
19622386 GCTTAAGGGACCATTGTATGAATTTACAAGTTGTAAAAATGGCATTGACACGTAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * *
19622451 ATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCGCATCCCGTCTCTTTGGTCGAC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* ** * *
19622516 GTAGGGCCCTTTCGCCCACCTGCCCGCTCGTTTCGTCGGTTGGGTTAGGCATACGGAGTTCATTC
131 GTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * *
19622581 CCAATCTAAGATCGGACCGGACCAAGGGTTGTGGCAGTAGGATCGGCAGCATGCAGAGGGGGACC
196 CCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAAGCAGAGGGGGACC
* * * * * * * * * *
19622646 C-AGCCAATCCCCGACTTGCGCATCCCTCCCTTCTGGCCAGCTAAGTGCACACACGCTCGTTTCG
261 CGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
*
19622710 TTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAA-TTCATTCCCAGTCTA
325 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAAGTTCATTCCCAGTCTA
* ** * * * *
19622774 AGATTGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGCTGTCGCATT
389 AGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
** * * * * *
19622839 TTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGAAGAACCTGACCGGCGGCATTGAGGTTCT
454 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCC
* * *
19622904 GGCGATC-GGGGGCCCGGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
519 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
19622968 ATATTGG-CCTCTATCCCTCATCAAACCTTGAGAACTCCCACCCCCTTAAAGAGCATTTGAGATT
584 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
19623032 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCTC
649 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
*
19623097 AAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
714 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * *
19623162 CACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAGAATTTTAAAAAATCTCAAACCGTAAA
779 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAA
* *
19623226 AAGTTTCAAAAGTCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
844 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
19623287 GCTCAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
** * * *
19623352 ATGTGATTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCTTCCCGTCTCTCTGGCCAGC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* *
19623417 GTAGTGCCCGCT----CACCCGCCCAG-TCGTTTCGTCGGTTGGCTTACGCATGCGGAGTTCATT
131 GTAGTGCCCGCTCGCCCACCCGCCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
** * ** * * * *
19623477 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATTGGCAGCACA-CAGAAGCGGA
195 CCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA-AGCAGAGGGGGA
* * * * * * * *
19623541 CCCG-GCTGATCCCCGACTTACACATCCCGCCCTTCTGGCTGACTGAGCGCCCGCACGATCGTTT
259 CCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * *
19623605 CGTGGGTTGATTTAGGCATACGGAGCTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCT
323 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCT
* *** * *
19623670 AAGATCGGATTGGACCGAGGGTTGCATTAGCATATGCTGGGCTCGGGCATGTGGTGGTGCCGCAT
388 AAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * *
19623735 TTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGAAGAACCTGACCGACGACATTGGGGTTC
453 TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTC
* * * *
19623800 CGACGATC-GGTGGGCCAGGGCTGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCT
518 CGACGATCGGGGGGGCC-GGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
19623864 CTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCCCACCCCCTTAAAAAGCATTTGAG
581 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
19623928 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
646 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
19623993 CCCAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
711 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * * * *
19624058 GATCACATCTACCAAGTTT-GGGCCAAAACTCCTTTCGAAAAAATTTT-AAACATTCCAAACCAT
776 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
*
19624121 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGACTCGTCTTGCCATGAAACTTCACGTGAAG
841 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
19624185 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
** * *
19624250 ATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCTGAC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * * **
19624315 GTAGTGCCCAC-CTG----TCCGCCTGGTCGTCTCGTCGGTTGGCTTAGGCATACGGAGTGAATT
131 GTAGTGCCCGCTC-GCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * *
19624375 CCCAGTCTAAGATTGAACCGGACTGAGGGTTGTGGCAGCAAGATCGGCAGCACGTAGAGGGGGAC
195 CCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAAGCAGAGGGGGAC
* * * * * * * *
19624440 CCGACCGATCCCCAGCTTGCGCATCCCACCCCTCCGACTGGCTGAGCGCCCGTATGCTCGTTTCG
260 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
19624505 TGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAACATACGAAATTCATTCCCAGTCTAA
325 TGGGTTGACTTAGGCATAC---G----------G---------A-G---TTCATTCCCAGTCTAA
* * ** *
19624570 ACATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
364 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19624635 CTCGGGCATGTGCTGGTGCCACATTTTGCTTTGTCGGGGCACCATCATCGGAGCATC-GCTGGAG
429 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATC-GGAG
*
19624699 AACCTGACCGACGGCATTGGGGTTCC-AGCGATCGGGGGGG-CTGGGGGGTGTGCGCACATGATG
493 AACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * * *
19624762 TACAATGGGTGCTGGTCCTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTC
557 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
19624827 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTCTGAA
622 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
19624892 ATGGGGACATTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTT
687 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * *
19624957 TGTGCAAGCCAAAAAAAATATAAGGATCATGTCTACTAAGTTTGGGGCCAAAACTGCTTTCGAAA
752 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
19625022 AAATTTTAAAAAATCCCGAACTGCT-AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
817 AAATTTTAAAAAATCCCGAACCG-TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
19625086 CTTGCCATGAAACATCACGTGAAG
881 CTTGCCATGAAACTTCACGTGAAG
* * * * *
19625110 GCTTAAGAGACCATTGTA-CAATTTTACAAGCCATAAAAATGGTATTGGCATGTAAAAATATGAA
1 GCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
** * * **
19625174 GATGTGCCTAAATGCACCTACCACCCTATCGATCCACGGCTTGTGCATCTCGTCTCTCTAACCGG
65 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * *
19625239 TGTAGTG--C-C-CGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
130 CGTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
** * * * * * * ** * *
19625300 CCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGTAGCAGGATTGGCAATACGTAGAGGGGGAC
195 CCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAAGCAGAGGGGGAC
* * * * * *
19625365 CCAACCAATCCCCGGGTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTAGTTTCG
260 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * * * *
19625430 TAGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTTAGCATATGGAGTTCATTCCCAGTCTAA
325 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
* ** * *
19625495 GACCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTT
390 GATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * ** ** *
19625560 TTCTTCGTCGAGGCACCATCATCGGAGCATCGCCAAAGAACCTGACCGGCGGCATTGGGGTTCCC
455 TTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTT-CC
* * * * *
19625625 G-CGATCGGGGGGGTC-GGGGGGTGTACGCACATGATGTGCAATGGGTGCTGGTACCTAGCCCTT
519 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
19625688 ATACTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
584 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
19625753 TTACAGGTTTGCTACCGGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTAC
649 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
*
19625818 AAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAA-AAAGAATACAAGGA
714 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA-AATACAAGGA
* * * *
19625882 TCATGTCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAA
778 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAA
* *
19625947 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCATGTGAAG
843 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
19626009 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * *
19626074 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCCTAAACCCACCTAAACCCTA
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG-C---ATCC-CGT---CTCTC
* * ** ** ** * ** *
19626139 TCGATCAACGGC-TTGTG--C-CTAAACCCACCTAAACCCTATCG-ATCCACGGCTTGTGCATCC
123 T-G-GC--CGGCGTAGTGCCCGCT-CGCCCACC--CGCCCGCTCGTTTCGTCGG-TTG-GC-T-T
* * * * * *** **
19626199 CGTC-TCTCTGGTCGGTGT-ATTGCCC-GCCTGCT-CG-TCTGCTCG-CTCGTTTCGTCGGTTGG
177 AGGCAT-AC-GG--AGT-TCATT-CCCAG--T-CTAAGAT-TG---GAC-CGGACCGAGGGTT-G
* * * *** * ***
19626258 CTTAGGCATACAGAGTTCATTC-CCAGTCTAAGATTGAACCAGACTGAGGGTTGCGATAGCAGGA
227 C---GGCA-GCAG-G---A-TCGACAG-C--A-A--G---CAGA--GGGGGACCCGATCG-ATCC
* * * **** * * * ** *
19626322 TCGG-TAGGACACAGAGAGGGACCCGGT-TGATCCCCGGCTTGTGCATCC-CACCCCTCTGGCTG
271 CCGGCT-TG-CGC--ATCCCG-CCC-CTCTG---GCCGGC-TGAGCGCCCGCA-CGCTC--G-T-
* ** * * * ** ** * *
19626384 GTTAAGTGCCCTCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
321 -TT-CGTG-GGT--TG-AC--TT--AGGCAT-AC---GGAGTTCA-------TTCCCAGTCTAAG
* * * * *
19626449 CATACGGAGTTCATT-CCAGTCTAAGATCGGA-TCGGACCTAGGGTTACGACAGCACATGCTAGG
365 CATACGAAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
19626512 CTCGGGCATGTGCT-GTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
429 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
* **
19626576 ACCTGACCAACGGCATTGGGGTTCCGACGATTAGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
494 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
19626640 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
559 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
19626705 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
624 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19626770 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTG
689 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
19626835 TGCATGCCAGA-AAAAATACAAGGATCATGTCTACTAAGTATGGGGCCAAAACTCCTTTCGAAGA
754 TGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
19626899 AATTTTAAAAAATCCTGAGCCGCAAAAAGTTT-AAAAATCGTGAAAAA-A-AAAA-GAGTTC-TC
818 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG-TCGTC
*
19626959 TTCCCATGAAACTTCACGTGAAG
882 TTGCCATGAAACTTCACGTGAAG
* * *
19626982 GCTTAAGGG-CCATTGTATGAAATTACAAGCCATAAAAATGGCATTGGCACGGAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * * *
19627046 GTGTGCCTAAGCCCACCTACCACCCGATCGTTCCACGGCTTGCGCATCCCATCTCTCTGGCTGGC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* *
19627111 GTAGTGCCCGC-CTG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTGATT
131 GTAGTGCCCGCTC-GCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * *
19627171 CCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGTAGCAAGATTGGCAGCACGCAGAGGGGGAC
195 CCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAAGCAGAGGGGGAC
* * * * * * *
19627236 CCAACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGTCGGCTGAGCGCCTGCACGCTTGTTTCG
260 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * *
19627301 TGGGTTGACATAGGCATATGGAGTTCATTACCAGTCTAAGCATAC-AGAGTTCATTCCCAGTCTA
325 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTA
** * *
19627365 AGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATT
389 AGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * * * * * *
19627430 TTTCCTCGTCGGAGCACCATCGTCGAAGTATC-GCTGGAGAACCTAACCGGCGGTATTGGGGTTC
454 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCATC-GGAGAACCTGACCGACGGCATTGGGGTTC
* * ** *
19627494 CGGCGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTATGATGGGTGCTGGTACTTGGCCTT
518 CGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
19627559 TATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
583 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * * * *
19627624 TTTACAAGTTTGCTGCCAGCAGCCTTTAATGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCA
648 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * *
19627689 CAAAATCTTGTACACTTCGCGTTTTTAGCTGAATTTTTTTGTGCATGCGAAAAAAAATGCAAGGA
713 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * *
19627754 TCATGTCTACCAGGTTTGGGGCCAAAAATCCTTCC-AAAAAATTTTTGAAAAATCCCGAACCGCA
778 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGTA
* * *
19627818 AAAGGTTTTAAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAG
842 AAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
19627881 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGATGCAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * *
19627946 ATGTGCCAAAACCCACCTACCACCCTATCGATGCACGGCTTGCGCATCTCGTCTCTCTGGCCGAC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* ** * * *
19628011 ATAGT----GCTCGCCTGCCCGTCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTT
131 GTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * *
19628072 CCAGTCCAAGATCGGACCGGACCGAGGGTTGCGGTAGCAAGATTGGCAGCACGCAGAGGGGGACC
196 CCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAAGCAGAGGGGGACC
* ** * * * **
19628137 CGGTCGATCCCTAGCTTGCGCATCCCGCCCTTCT-GCCGGCTGAGCGCCTGCACGCTTGTTTTAT
261 CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
19628201 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
326 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
* * * * * * * *
19628266 ATCGGACCGGACCAAGGGTTGTGGCAGTAAATGCTAGGCTCGAGCATGTGCTGGTGCTGCATTTT
391 ATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * * * *
19628331 TCTTCATCGGGGCGCCATCGCCGGAGCATCACCGGAGAACCTGACCGACTGCATTGGGGTTCCGA
456 TCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * * *
19628396 CGATCGGGGGGGCCGGGGGGAGGAGTGTGCACAGGATGTGCAATGGGTGCTGGTACTTGGCCCTT
521 CGATCGGGGGGGCC-GGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
19628461 ATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
584 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * * * *
19628526 TTACAGGTTTCCTGCTAGTAGCGATTAAAGTGTATAAAATGGGGACACTTTTTTCAAATGGTCAC
649 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
*
19628591 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAATTACAAGGAT
714 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * * ***
19628656 CACGTCTACCAAGTTTGGGCCCAAAAATCCTTCCGAAAAAAATTTAAAAAAATCTCGAACCACGA
779 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCCGAACCGTAA
*
19628721 AAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
843 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* ***
19628783 GCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCACATAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * *
19628848 ATGTGCCTAAACCCACCAACTACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGGC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * ** * * *
19628913 GTAGCGCTCGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTCGTTTAGGCATACAGAGTTCATTC
131 GTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * ** *
19628978 TCAGTCTAAGATTAGACCGGACTGAGGGTTGCGGCAGCAGAATCGGTAGCACA-CAGATGGGGAC
196 CCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA-AGCAGAGGGGGAC
* * * * * * *
19629042 CTGACCGATCCCCGG-TTGCCCATCCCACCCCTCTGGTCAGTTGAGCGCCCGCACGCTCGTTTCG
260 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* *
19629106 TGGGTTGACTTAGGCATACGGAGTTCAGTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
325 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
* * * * * * *
19629171 GATC-GAATCGGGCCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCTTGTGCTGGTGCTGTAGT
390 GATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * * * ** *
19629235 TTTCTTCATCGAGGCACTATCGCCGGAGCATCACCGGAGAACCTGACCGGTGGCACTGGGGTTCC
454 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCC
* *
19629300 GACGAT-GGAGGGGGCCGGTGGAGGGTGTGCGCACATGATGTGCGATAGGTGCTGATACTTGGCC
519 GACGATCGG-GGGGGCCGG-GG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
** ** **** ** * *** * * * *
19629364 CTTATATTGG---GGT-TCCGGCATTGGGGGGGCCGGGGGGTGTGCACA----CATGATGTGCGA
581 CTTATATTGGCCCCCTATCCCTCA-T---CAAACCTCGAGAACT-CACACCCCCTTAAAGAGC-A
** * * ** * ** ** * * ** *
19629421 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CCTC-GAGAACT---C
640 TTTGAGATTTTAC-AGG---TT-TGCT-G-CCAGTA--GC-CATTAAAGTGTCTGA-AA-TGGGG
*** ** * *** * **
19629481 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC-CATTAAAGTGTTTGA
693 ACA-CTTTTTTCA-A--A--TG-G---TCACA-AAAT-CT---TGTA-CAC-TTCGAGT-TTT--
* ** * *** * * ** * * *
19629545 AATGGGGACACTTTTTT-CAAATGGTC-ACAAAATCTTGTAC-A-CTTCAAGTTTTTCGCTGAAT
738 TA-GCTGA-ATTTTTTTGTGCAT-GCCAACAAAA----ATACAAGGATCACG-TCTAC-C--AA-
* * * * ***** ** *
19629606 TTTTTTGTGCATGCCAAAAAAAATACAATGATCACGTCTACCTTGTTTTGGGCCAAAA-CTCC-T
791 --GTTTG-G--GGCC---AAAACT-C-CT--TC-CG---AAAAAATTTT---AAAAAATC-CCGA
* * * ** ** * ** * * ** *
19629669 TCTGTAAAAAGTTTAAAAAATCCCGAACCACA-AAAA-GTTTCAAAAATCATGAAAAATAGAAAA
836 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC----GTCTTG--CCAT-GAAAC
*
19629732 TGAGTCGTCTTGCCATGAA-
894 T---TC-AC--G---TGAAG
* * * * *
19629751 ACTTCACGTGA-AAGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCATTGGCAT
1 GCTT-AAGGGACCA--TT----G--TA-TG-A--A-TTTACAAGCCATAAAAATGGCATTGGCAT
* * * * * *
19629815 GCAAAAATATGAAGATGTGCATAAACCCACCAACCACCCTATCGATCTACGGCTTCCGTATCCCG
52 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * * * *
19629880 TCTCTTTGGTCGGTGTAGCGCCCGC-CTGCCCGCCCACCCGCTTGTTTCGTCGGTTGGCTTATGC
117 TCTCTCTGGCCGGCGTAGTGCCCGCTC-GCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* ** * ** *
19629944 ATACAGAGTTCATTCCTGGTCTAAGAATGGACCGGACCGAGGGTTATGGAAGCAGGATCGACAGC
181 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGC
* * * * * * *
19630009 ACA-CAGAGGGGGACGCGTTTGATCCCTGGCTTGCGTATCCTGCCCCTCTGGCCGACTGAGCGCC
246 A-AGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * *
19630073 CACACCCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
310 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGT
* ** * * ** *
19630138 TCATTCCCAGTCTAAGATAGGGTTGGACCAAAGGTTGCGATAGCACATGCTAGGCTCGGGCATGT
375 TCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * * * *
19630203 GCTGGTGCCACATTTTTCTTTGCCTGGGCACCA--AT----G---C--CGGAGAACCTGACCGGC
440 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGAC
* * * * *
19630257 GACATTGGGGTTTCGACGATCAGGGGGGCC--GGGGGTGTGCGCCCTTGATGTGCGATGGGTGCT
505 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* ** *
19630320 GGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAAAGAACTCACTCCCCCTTAAA
570 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
19630385 GAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
635 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
19630450 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
700 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
19630515 AAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAAAGTTTAAAAAA
765 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* *
19630580 TCCCGAACCGCAAAAAGTTTCAAAAATCACGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
830 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
19630645 TCACGTGAAG
895 TCACGTGAAG
* * * *
19630655 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCATCGGCATTCAAAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* **
19630720 ATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCTAC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
*** * * *
19630785 GTAGTGCCCG-TC-CAGCTGTCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCAT
131 GTAGTGCCCGCTCGC--CCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * *
19630848 TCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAGCAGCAGGATCGGCAGCACA-CAGAGGGGG
194 TCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA-AGCAGAGGGGG
* * ** * * * *
19630912 ACCCGGTCGAT-CCCGACTTGCGCATCTTGCCCCTCTGGCC-GATACAGCACCCGCTCGCTCGTT
258 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-GAGCGCCCGCACGCTCGTT
* * *
19630975 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTC
322 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTC
* * * * *
19631040 TAAGATCGGACCGGACCGAGGGTTACGACAACACATGCTAGGCTCGGGCATGTGCTGGTGCCGCA
387 TAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * * *
19631105 TTTTTCTTCGCCAGGGCACCATCGCCAGAGCATCATCGTAGAACCTGACCGACGGCATTGGGGTT
452 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTT
** * * * *
19631170 CCGGTGATC--GGGGGCCCGGGGGTTGTGCGCACATGATGTGTGATGGGCGCTGGTACTTGGCCC
517 CCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
19631233 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC-CACCCCCTTAAAGAACATTTGAGA
582 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
19631297 TTTTACAGGTTTGCTGCCAATAGCAATTAAAGTGTCTGAAAGGGGGACACTTTTTTCAAATGGTC
647 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* ** * *
19631362 ACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTCATGCCTGCCAACAAAAATACAAGA
712 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * * *
19631427 ATCACGCCTACCAAGGTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCACGAACCGTA
777 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTA
* *
19631492 AAAAGTTTCAAAAATCATGAAAAATACAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAG
842 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
19631555 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATAAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
** * * * * * *
19631620 ATGAACCTAAACCCACCTACCACCCTATCAATCCACGGCATGCGTATCCCGTCTCTCTAGTCGAC
66 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * **
19631685 GTAGTG--C-C-CGCCCGCCCGCCCACTCGTTTCGTCAATTGGCTTAGGCATACGGAGTTCATTC
131 GTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
*** * *
19631746 CCAGTCTAAGATCAAACTGGACCGAGGGTTGTGGCAGCA
196 CCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCA
19631785 CATGCTGGGC
Statistics
Matches: 31262, Mismatches: 5359, Indels: 3815
0.77 0.13 0.09
Matches are distributed among these distances:
852 1 0.00
853 82 0.00
854 1 0.00
855 2 0.00
856 4 0.00
858 4 0.00
859 119 0.00
860 69 0.00
861 6 0.00
862 323 0.01
863 640 0.02
864 43 0.00
865 5 0.00
866 17 0.00
867 6 0.00
868 3 0.00
869 51 0.00
870 5 0.00
871 8 0.00
872 5 0.00
873 4 0.00
874 89 0.00
875 856 0.03
876 1022 0.03
877 634 0.02
878 385 0.01
879 555 0.02
880 456 0.01
881 9 0.00
882 783 0.03
883 67 0.00
884 276 0.01
885 647 0.02
886 329 0.01
887 645 0.02
888 567 0.02
889 334 0.01
890 1049 0.03
891 662 0.02
892 232 0.01
893 720 0.02
894 599 0.02
895 465 0.01
896 1207 0.04
897 921 0.03
898 1738 0.06
899 2270 0.07
900 1037 0.03
901 793 0.03
902 824 0.03
903 1932 0.06
904 601 0.02
905 214 0.01
906 419 0.01
907 13 0.00
908 93 0.00
909 12 0.00
910 14 0.00
911 265 0.01
912 54 0.00
913 44 0.00
914 24 0.00
915 10 0.00
916 9 0.00
917 44 0.00
918 136 0.00
919 27 0.00
920 25 0.00
921 27 0.00
922 76 0.00
923 207 0.01
924 196 0.01
925 382 0.01
926 21 0.00
927 20 0.00
928 12 0.00
929 8 0.00
930 10 0.00
931 16 0.00
932 15 0.00
933 20 0.00
934 28 0.00
935 21 0.00
936 20 0.00
937 13 0.00
938 7 0.00
939 13 0.00
940 150 0.00
941 58 0.00
942 32 0.00
943 28 0.00
944 15 0.00
945 32 0.00
946 34 0.00
947 14 0.00
948 19 0.00
949 14 0.00
950 38 0.00
951 33 0.00
952 59 0.00
953 36 0.00
954 26 0.00
955 36 0.00
956 15 0.00
957 24 0.00
958 48 0.00
959 42 0.00
960 61 0.00
961 66 0.00
962 32 0.00
963 55 0.00
964 27 0.00
965 51 0.00
966 88 0.00
967 116 0.00
968 203 0.01
969 134 0.00
970 20 0.00
971 61 0.00
972 110 0.00
973 52 0.00
974 15 0.00
975 32 0.00
976 38 0.00
977 373 0.01
978 65 0.00
979 33 0.00
980 11 0.00
981 223 0.01
982 172 0.01
983 12 0.00
984 16 0.00
985 6 0.00
986 2 0.00
987 13 0.00
988 24 0.00
989 6 0.00
990 8 0.00
991 19 0.00
992 11 0.00
993 20 0.00
994 10 0.00
995 7 0.00
996 5 0.00
997 5 0.00
998 2 0.00
999 20 0.00
1000 20 0.00
1001 25 0.00
1002 23 0.00
1003 17 0.00
1004 33 0.00
1005 22 0.00
1006 13 0.00
1007 9 0.00
1008 10 0.00
1009 11 0.00
1010 2 0.00
1011 15 0.00
1012 24 0.00
1013 16 0.00
1014 23 0.00
1015 16 0.00
1016 21 0.00
1017 30 0.00
1018 26 0.00
1019 21 0.00
1020 16 0.00
1021 17 0.00
1022 15 0.00
1023 40 0.00
1024 284 0.01
1025 315 0.01
1026 355 0.01
1027 310 0.01
1028 271 0.01
1029 278 0.01
1030 403 0.01
1031 211 0.01
1032 273 0.01
1033 230 0.01
1034 196 0.01
1035 147 0.00
1036 200 0.01
1037 168 0.01
1038 286 0.01
1039 169 0.01
1040 210 0.01
1041 213 0.01
1042 169 0.01
1043 137 0.00
1044 119 0.00
1045 117 0.00
1046 126 0.00
1047 317 0.01
1048 306 0.01
1049 74 0.00
1050 70 0.00
1051 107 0.00
1052 88 0.00
1053 227 0.01
1054 81 0.00
1055 80 0.00
1056 47 0.00
1057 46 0.00
1058 60 0.00
1059 151 0.00
1060 178 0.01
1061 184 0.01
1062 94 0.00
1063 37 0.00
1064 111 0.00
1065 88 0.00
1066 45 0.00
1067 36 0.00
1068 99 0.00
1069 105 0.00
1070 71 0.00
1071 97 0.00
1072 166 0.01
1073 159 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (904 bp):
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
GTAGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAAGCAGAGGGGGACC
CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
ATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
TCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
Found at i:19596326 original size:26 final size:26
Alignment explanation
Indices: 19596297--19596349 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19596287 GTTGACTTAG
19596297 GCATACGGAGTTCATTC-CTAGTCTAA
1 GCATACGGAGTTCATTCTC-AGTCTAA
*
19596323 GCATGCGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
19596349 G
1 G
19596350 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:19598090 original size:26 final size:26
Alignment explanation
Indices: 19598054--19598104 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
19598044 TGACATAGGG
19598054 ATACAGAGTTCATTCCTAGTCTAAGC
1 ATACAGAGTTCATTCCTAGTCTAAGC
19598080 ATACAGAGTTCATTCCTAGTCTAAG
1 ATACAGAGTTCATTCCTAGTCTAAG
19598105 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCTAGTCTAAGC
Found at i:19598977 original size:26 final size:26
Alignment explanation
Indices: 19598941--19598993 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19598931 GTTGACTTAG
* *
19598941 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19598967 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19598993 G
1 G
19598994 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19600804 original size:27 final size:27
Alignment explanation
Indices: 19600741--19600819 Score: 99
Period size: 25 Copynumber: 3.0 Consensus size: 27
19600731 GTTGACTTAG
19600741 GCATACGAAGTTCATTCCCAGTC--AA
1 GCATACGAAGTTCATTCCCAGTCTAAA
* * *
19600766 GCATATGTAGTTCATTTCCAGTCTAAA
1 GCATACGAAGTTCATTCCCAGTCTAAA
*
19600793 GCATACGGAGTTCGATTCCCAGTCTAA
1 GCATACGAAGTTC-ATTCCCAGTCTAA
19600820 GATCGGATCG
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
25 20 0.44
27 13 0.29
28 12 0.27
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (27 bp):
GCATACGAAGTTCATTCCCAGTCTAAA
Found at i:19601717 original size:25 final size:26
Alignment explanation
Indices: 19601682--19601733 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
19601672 GTTGACTTAG
*
19601682 GCATAAGGAGTTCATTCTCAATCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
*
19601708 GCAT-AGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
19601733 G
1 G
19601734 ATCGGAATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAATCTAA
Found at i:19603508 original size:26 final size:26
Alignment explanation
Indices: 19603472--19603524 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19603462 GTTGACTTAG
*
19603472 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19603498 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19603524 G
1 G
19603525 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19605501 original size:13 final size:12
Alignment explanation
Indices: 19605466--19605497 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
19605456 GTGCTGGTAC
19605466 TTGGCCCCTATA
1 TTGGCCCCTATA
19605478 TTGGCCCCTATA
1 TTGGCCCCTATA
19605490 TTGGCCCC
1 TTGGCCCC
19605498 CTATCCCTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.12, C:0.38, G:0.19, T:0.31
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:19605684 original size:26 final size:26
Alignment explanation
Indices: 19605648--19605698 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19605638 GTTGACTTAG
19605648 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
19605674 GCATGCGGAGTTCATTCTCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
19605699 TGATCGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19607445 original size:26 final size:26
Alignment explanation
Indices: 19607415--19607467 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19607405 GTTGACTTAG
19607415 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19607441 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19607467 G
1 G
19607468 TTCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19608356 original size:26 final size:26
Alignment explanation
Indices: 19608317--19608369 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19608307 GTTGACTTAG
19608317 GCATACGGAATTCATTCCTAGTCTAA
1 GCATACGGAATTCATTCCTAGTCTAA
*
19608343 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAATTCATTCCTAGTCTAA
19608369 G
1 G
19608370 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCCTAGTCTAA
Found at i:19610997 original size:26 final size:26
Alignment explanation
Indices: 19610961--19611012 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19610951 GTTGACTTAG
*
19610961 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19610987 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19611013 AATCGGATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19611883 original size:26 final size:26
Alignment explanation
Indices: 19611847--19611899 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19611837 GTTGACTTAG
19611847 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19611873 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19611899 G
1 G
19611900 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19612779 original size:26 final size:26
Alignment explanation
Indices: 19612743--19612795 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19612733 GTTAACTTAG
19612743 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
19612769 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19612795 G
1 G
19612796 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19613673 original size:26 final size:26
Alignment explanation
Indices: 19613644--19613696 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19613634 GTTGACTTAG
* *
19613644 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTACATTCCCAGTCTAA
19613670 GCATATGAAGTACATTCCCAGTCTAA
1 GCATATGAAGTACATTCCCAGTCTAA
19613696 G
1 G
19613697 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTACATTCCCAGTCTAA
Found at i:19614648 original size:158 final size:158
Alignment explanation
Indices: 19614435--19614724 Score: 427
Period size: 158 Copynumber: 1.8 Consensus size: 158
19614425 GGGTTATGGC
* * * * *
19614435 AGTAGGATCGGCAGGACGCATAGGGGGACCCGGCCGATCCCCGACTTGTGTATCCCGCCCCTCTG
1 AGTAGGATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGACTTGAGCATCCCGCCCCTCTG
* * *
19614500 GCCGATTGAGCGCACTCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAATTCATTCCCAGTC
66 GCCGACTGAGCGCACGCACGCTCGTTTCGCGGGTTGACTTAGGCATACAGAATTCATTCCCAGTC
19614565 TAGATCAGACAGGATTGAGGGTTACAAT
131 TAGATCAGACAGGATTGAGGGTTACAAT
* * *
19614593 AGTAGGATCGGCAGCACACAGAGGGGGATCCGGTCGATCCCCGGCTTGAGCATCCCGCCCCTCTG
1 AGTAGGATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGACTTGAGCATCCCGCCCCTCTG
* * * * * *
19614658 GCTGGCTGAGCGCACGCACGCTCGTTTCGCGGGTTGACTTCGGCATACGGAGTTCATTCCTAGTC
66 GCCGACTGAGCGCACGCACGCTCGTTTCGCGGGTTGACTTAGGCATACAGAATTCATTCCCAGTC
19614723 TA
131 TA
19614725 AGCATACGGA
Statistics
Matches: 115, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
158 115 1.00
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
AGTAGGATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGACTTGAGCATCCCGCCCCTCTG
GCCGACTGAGCGCACGCACGCTCGTTTCGCGGGTTGACTTAGGCATACAGAATTCATTCCCAGTC
TAGATCAGACAGGATTGAGGGTTACAAT
Found at i:19614736 original size:26 final size:26
Alignment explanation
Indices: 19614700--19614752 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19614690 GTTGACTTCG
*
19614700 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19614726 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19614752 G
1 G
19614753 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19615633 original size:26 final size:26
Alignment explanation
Indices: 19615604--19615656 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19615594 GTTGACTTAG
19615604 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19615630 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19615656 G
1 G
19615657 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19616542 original size:26 final size:26
Alignment explanation
Indices: 19616506--19616558 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19616496 GTTGACTTAG
* *
19616506 GCATATGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19616532 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19616558 G
1 G
19616559 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19617422 original size:26 final size:26
Alignment explanation
Indices: 19617392--19617442 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19617382 TGACTTAGGC
*
19617392 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACGGAGTTCATTCCAAGTCTAAGT
19617418 ATACGGAGTTCATTCCAAGTCTAAG
1 ATACGGAGTTCATTCCAAGTCTAAG
19617443 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCAAGTCTAAGT
Found at i:19618307 original size:26 final size:26
Alignment explanation
Indices: 19618271--19618321 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19618261 TTGACTTAGG
* *
19618271 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACAGAGTTCATTCACAGTCTAAA
19618297 CATACAGAGTTCATTCACAGTCTAA
1 CATACAGAGTTCATTCACAGTCTAA
19618322 GATCAGACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCACAGTCTAAA
Found at i:19619174 original size:26 final size:26
Alignment explanation
Indices: 19619144--19619196 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19619134 GTTGACTTAG
*
19619144 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
19619170 GCATATGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
19619196 G
1 G
19619197 ACCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:19620074 original size:26 final size:26
Alignment explanation
Indices: 19620044--19620093 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19620034 TTTGGCTTAG
*
19620044 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
19620070 GCATATGAAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATTCCCAGTCT
19620094 GAGATCGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19620963 original size:26 final size:25
Alignment explanation
Indices: 19620927--19620978 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
19620917 GTTTACTTAG
19620927 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATT-CCAGTCTAA
*
19620953 GCATACAGAGTTCATTTCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
19620978 G
1 G
19620979 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:19622762 original size:26 final size:26
Alignment explanation
Indices: 19622723--19622775 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19622713 GTTGACTTAG
*
19622723 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
19622749 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
19622775 G
1 G
19622776 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:19623663 original size:26 final size:26
Alignment explanation
Indices: 19623620--19623672 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19623610 GTTGATTTAG
19623620 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
* *
19623646 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
19623672 G
1 G
19623673 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:19624548 original size:26 final size:26
Alignment explanation
Indices: 19624519--19624595 Score: 127
Period size: 26 Copynumber: 3.0 Consensus size: 26
19624509 TTGACTTAGG
*
19624519 CATACGGAGTTTATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
* *
19624545 CATACGAAATTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
19624571 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
19624596 GATCGGACCA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:19625478 original size:26 final size:27
Alignment explanation
Indices: 19625438--19625492 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
19625428 CGTAGGTTGA
19625438 CTTAGGCATACGGAGCTCATTCCCAGT
1 CTTAGGCATACGGAGCTCATTCCCAGT
* *
19625465 CTTA-GCATATGGAGTTCATTCCCAGT
1 CTTAGGCATACGGAGCTCATTCCCAGT
19625491 CT
1 CT
19625493 AAGACCGGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (27 bp):
CTTAGGCATACGGAGCTCATTCCCAGT
Found at i:19626150 original size:38 final size:38
Alignment explanation
Indices: 19626075--19626194 Score: 213
Period size: 38 Copynumber: 3.1 Consensus size: 38
19626065 AATATGAAGA
*
19626075 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
1 TGTGCCTAAACCCACCTA-AACCCTATCGATCCACGGCT
*
19626114 TGTGCCTAAACCCACCTAAACCCTATCGATCAACGGCT
1 TGTGCCTAAACCCACCTAAACCCTATCGATCCACGGCT
19626152 TGTGCCTAAACCCACCTAAACCCTATCGATCCACGGCT
1 TGTGCCTAAACCCACCTAAACCCTATCGATCCACGGCT
19626190 TGTGC
1 TGTGC
19626195 ATCCCGTCTC
Statistics
Matches: 78, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
38 60 0.77
39 18 0.23
ACGTcount: A:0.25, C:0.39, G:0.14, T:0.22
Consensus pattern (38 bp):
TGTGCCTAAACCCACCTAAACCCTATCGATCCACGGCT
Found at i:19626473 original size:25 final size:26
Alignment explanation
Indices: 19626422--19626473 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19626412 GTTGACTTAG
19626422 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19626448 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19626473 G
1 G
19626474 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19628250 original size:26 final size:26
Alignment explanation
Indices: 19628213--19628265 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19628203 GTTGACTTAG
*
19628213 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19628239 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19628265 G
1 G
19628266 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Done.