Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 114 of 117
Found at i:19629155 original size:26 final size:26
Alignment explanation
Indices: 19629119--19629171 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19629109 GTTGACTTAG
19629119 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
*
19629145 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
19629171 G
1 G
19629172 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:19629421 original size:76 final size:80
Alignment explanation
Indices: 19629291--19629449 Score: 238
Period size: 76 Copynumber: 2.0 Consensus size: 80
19629281 CCGGTGGCAC
*
19629291 TGGGGTTCCGACGATGGAGGGGGCCGGTGGAGGGTGTGCGCACATGATGTGCGATAGGTGCTGAT
1 TGGGGTTCCGACGATGGAGGGGGCCGGTGGAGGGTGTGCACACATGATGTGCGATAGGTGCTGAT
19629356 ACTTGGCCCTTATAT
66 ACTTGGCCCTTATAT
* * *
19629371 TGGGGTTCCGGC-ATTGG-GGGGGCC-G-GG-GGGTGTGCACACATGATGTGCGATGGGTGCTGG
1 TGGGGTTCCGACGA-TGGAGGGGGCCGGTGGAGGGTGTGCACACATGATGTGCGATAGGTGCTGA
19629431 TACTTGGCCCTTATAT
65 TACTTGGCCCTTATAT
19629447 TGG
1 TGG
19629450 CCCCCTATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
76 49 0.66
77 2 0.03
78 1 0.01
79 8 0.11
80 14 0.19
ACGTcount: A:0.14, C:0.18, G:0.43, T:0.26
Consensus pattern (80 bp):
TGGGGTTCCGACGATGGAGGGGGCCGGTGGAGGGTGTGCACACATGATGTGCGATAGGTGCTGAT
ACTTGGCCCTTATAT
Found at i:19630137 original size:26 final size:26
Alignment explanation
Indices: 19630101--19630153 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19630091 GTTGACTTAT
19630101 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19630127 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19630153 G
1 G
19630154 ATAGGGTTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19631021 original size:26 final size:26
Alignment explanation
Indices: 19630991--19631043 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19630981 GTTGACTTAG
19630991 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19631017 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19631043 G
1 G
19631044 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19631516 original size:900 final size:885
Alignment explanation
Indices: 19629369--19631776 Score: 3421
Period size: 891 Copynumber: 2.7 Consensus size: 885
19629359 TGGCCCTTAT
* * *
19629369 ATTGGGGTTCCGGCATTGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTAC
1 ATTGGGGTTCCGGGA-TCGGGGGGCC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
19629434 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
64 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
19629499 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCA
129 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
19629564 AATGGTCACAAAATCTTGTACACTTCAAGTTTTTCGCTGAATTTTTTTGTGCATGCCAAAAAAAA
194 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
** *
19629629 TACAATGATCACGTCTACCTTGTTTTGGGCCAAAACTCC-TTCTGTAAAAAGTTTAAAAAATCCC
259 TACAA-GATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTTC-GAAAAAAGTTTAAAAAATCCC
*
19629693 GAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
322 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
* * *
19629758 GTGAAAGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCATTGGCATGCAAAAAT
387 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATTCAAAAAT
* * * * *
19629823 ATGAAGATGTGCATAAACCCACCAACCACCCTATCGATCTACGGCTTCCGTATCCCGTCTCTTTG
452 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTG
** * * * *
19629888 GTCGGTGTAGCGCCCGCCTGCCCGCCCACCCGCTTGTTTCGTCGGTTGGCTTATGCATAC-AGAG
517 GTCGACGTAGTGCCCGCC-G--CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGA-AG
** ***
19629952 TTCATTCCTGGTCTAAGAAT-GGACCGGACCGAGGGTTATGGAAGCAGGATCGACAGCACACAGA
578 TTCATTCCCAGTCTAAG-ATCGGACCGGACCGAGGGTTGCAGAAGCAGGATCGACAGCACACAGA
* * * * * * *
19630016 GGGGGACGCGTTTGATCCCTGGCTTGCGTATCCTGCCCCTCTGGCCGACTGAGCGCCCACACCCT
642 GGGGGACCCGGTCGATCCCTGACTTGCGCATCCTGCCCCTCTGGCCGACTCAGCACCCACACCCT
* *
19630081 CGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
707 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
*** * * *
19630146 AGTCTAAGATAGGGTTGGACCAAAGGTTGCGATAGCACATGCTAGGCTCGGGCATGTGCTGGTGC
772 AGTCTAAGATAGGACCGGACCAAAGGTTACGACAACACATGCTAGGCTCGGGCATGTGCTGGTGC
* * *
19630211 CACATTTTTCTTTGCCTGGGCACCAATGCCGGAGAACCTGACCGGCGAC
837 CACATTTTTCTTCGCCAGGGCACCAATGCCGGAGAACCTGACCGACGAC
* * * *
19630260 ATTGGGGTTTCGACGATCAGGGGGGCCGGGGGTGTGCGCCCTTGATGTGCGATGGGTGCTGGTAC
1 ATTGGGGTTCCG-GGATC-GGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* ** *
19630325 ATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAAAGAACTCACTCCCCCTTAAAGAGCA
64 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
19630390 TTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
129 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
19630455 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
194 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
*
19630520 TACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAAAGTTTAAAAAATCCCG
259 TACAA-GATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTTCGAAAAAAGTTTAAAAAATCCCG
* *
19630585 AACCGCAAAAAGTTTCAAAAATCACGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
323 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACG
* *
19630650 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCATCGGCATTCAAAAATA
388 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATTCAAAAATA
* *
19630715 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGG
453 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGG
* * * * *
19630780 CCTACGTAGTGCCCGTCCAGCTGTCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTT
518 TCGACGTAGTGCCCG-CC-GC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTT
* * *
19630845 CATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAGCAGCAGGATCGGCAGCACACAGAGGG
580 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGAAGCAGGATCGACAGCACACAGAGGG
* * * *
19630910 GGACCCGGTCGATCCC-GACTTGCGCATCTTGCCCCTCTGGCCGA-TACAGCACCCGCTCGCTCG
645 GGACCCGGTCGATCCCTGACTTGCGCATCCTGCCCCTCTGGCCGACT-CAGCACCCACACCCTCG
*
19630973 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAG
709 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
19631038 TCTAAGATCGGACCGGACCGAGGGTTACGACAACACATGCTAGGCTCGGGCATGTGCTGGTGCCG
774 TCTAAGATAGGACCGGACCAAAGGTTACGACAACACATGCTAGGCTCGGGCATGTGCTGGTGCCA
*
19631103 CATTTTTCTTCGCCAGGGCACC-ATCGCCAGAGCATCATCGTAGAACCTGACCGACGGC
839 CATTTTTCTTCGCCAGGGCACCAAT-GCC---G-------G-AGAACCTGACCGACGAC
* * *
19631161 ATTGGGGTTCCGGTGATCGGGGGCCCGGGGGTTGTGCGCACATGATGTGTGATGGGCGCTGGTAC
1 ATTGGGGTTCCGG-GATCGGGGGGCCGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
19631226 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC-CACCCCCTTAAAGAACA
64 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * *
19631290 TTTGAGATTTTACAGGTTTGCTGCCAATAGCAATTAAAGTGTCTGAAAGGGGGACACTTTTTTCA
129 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* ** *
19631355 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTCATGCCTGCCAACAAAAA
194 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * * *
19631420 TACAAGAATCACGCCTACCAAGGTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCACG
259 TACAAG-ATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTTCGAAAAAAGTTTAAAAAATCCCG
* *
19631485 AACCGTAAAAAGTTTCAAAAATCATGAAAAATACAAAATGAGTCGTCTTGCCATGAAACTTCACG
323 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACG
* *
19631550 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT-AGAAAT
388 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TTCAAAAAT
* ** * * *
19631614 ATAAAGATGAACCTAAACCCACCTACCACCCTATCAATCCACGGCATGCGTATCCCGTCTCTCTA
452 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTG
* ** *
19631679 GTCGACGTAGTGCCCGCC-CGCCCGCCCACTCGTTTCGTCAATTGGCTTAGGCATACGGAGTTCA
517 GTCGACGTAGTGCCCGCCGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCA
** *
19631743 TTCCCAGTCTAAGATCAAACTGGACCGAGGGTTG
582 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
19631777 TGGCAGCACA
Statistics
Matches: 1353, Mismatches: 140, Indels: 43
0.88 0.09 0.03
Matches are distributed among these distances:
889 3 0.00
890 180 0.13
891 582 0.43
892 15 0.01
893 1 0.00
896 68 0.05
897 1 0.00
899 3 0.00
900 396 0.29
901 104 0.08
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (885 bp):
ATTGGGGTTCCGGGATCGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
CAAGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTTCGAAAAAAGTTTAAAAAATCCCGAAC
CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATTCAAAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGTCG
ACGTAGTGCCCGCCGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCC
CAGTCTAAGATCGGACCGGACCGAGGGTTGCAGAAGCAGGATCGACAGCACACAGAGGGGGACCC
GGTCGATCCCTGACTTGCGCATCCTGCCCCTCTGGCCGACTCAGCACCCACACCCTCGTTTCATG
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TAGGACCGGACCAAAGGTTACGACAACACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTT
CTTCGCCAGGGCACCAATGCCGGAGAACCTGACCGACGAC
Found at i:19632498 original size:26 final size:26
Alignment explanation
Indices: 19632467--19632519 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19632457 TTTGACTTAG
*
19632467 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
*
19632493 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
19632519 G
1 G
19632520 GTTAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:19633379 original size:26 final size:26
Alignment explanation
Indices: 19633341--19633393 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19633331 GTGGACTTAG
*
19633341 GCATACTGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
* *
19633367 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
19633393 G
1 G
19633394 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:19633839 original size:896 final size:891
Alignment explanation
Indices: 19632050--19640837 Score: 7256
Period size: 896 Copynumber: 9.7 Consensus size: 891
19632040 AAAGTGTCTG
* * * * *
19632050 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCTTAAAAAATAGAAAAGGAGTCGTC
1 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
19632115 TTGCCATGAAACTTTATGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGG
66 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
19632180 CATTTGCATGCGGAAATGTGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
131 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
19632245 TGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCTTTTCATCGGTTGGCTTAGGC
196 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCACTCGTTTCATCGGTTGGCTTAGGC
* * * * * ** *
19632310 ATATGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCAAGGGTTACGGCAACAGGATGGGTAGC
261 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATCAGCAGC
* * * * *
19632375 ACACAGAGGGGGACCCGGTCGATTCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACAGAGTGCCC
326 ACACAGAGGGGGACCC-GACCATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCC
** * * *
19632440 ATACGCTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAGCATACAGAGTT
390 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * *
19632505 CATTCCCAGTCTAAGGTTAGATCGGACCGACGGTTACGACAGCACATGCTAGGCTCGGGCATGTG
455 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTG
** * *
19632570 CTGGTGCCATATTTTTCTTCGCCGGGGCACCA-T----CAT-CGGAGAACCTGACTGGCGGCATT
520 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTCGAGCATCCGGAGAACCTGACCGGCGGCATT
* ** * * * *
19632629 AGGGTTCCGGTGATCGAGAGGGCCGAGAGGGGGTGTGCGCACATGATGTGCAATGGGTGCTTGTA
585 GGGGTTCCGACGATCGGGAGGGCTGCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTTGTA
* * *
19632694 CTTGGCACTTATATAGGCCCCCTATCCCTCATCAAACCTCAAGAA--CACA---C-T-----GCA
650 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCA
* * * *
19632748 TTTGAGATTTTACAAGTTTGTTGCTAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
715 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
19632813 AATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG-TAGAATTTTTTTATGCATGCCAAAAAAA
780 AATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT-GAATTTTTTTGTGCATGCCAAAAAAA
* *
19632877 ATACAAGGGTCACGGCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
844 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
19632925 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTC
1 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * ** **
19632990 TTGCAATGAAACTTCACGTGAAGGCTTAAAGGAAGATTGTATGAATTTACAAGCTTTAAAAATGG
66 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
19633055 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCCACAGCTTA
131 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *** * * * * *
19633120 CGTATCCCGTCTCTCTGGCCGATATAGTGCCCACCCGTCTACTCGTTTCATCGATTCGCTTAGGA
196 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCACTCGTTTCATCGGTTGGCTTAGGC
* * * *
19633185 ATACGGAGTTCATTCCCAGTCTAAGAT-GGACCGAACCAAGGGTTACGACAGTAGGAT-AGGCAG
261 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATCA-GCAG
19633248 CACACAGAGGGGGACCCGACCATTCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCC
325 CACACAGAGGGGGACCCGACCA-TCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCC
* * * * *
19633313 CGCACGCTCGTTTCGCGGGTGGACTTAGGCATACTGAGTTCATTCACAGTCTAAGCATACGGTGT
389 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * *
19633378 TCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGATAGTACATGCTGGGCTCGGGCATGT
454 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGT
* *
19633443 GCTGGTGCCGCATTTTCCTTCGTCGAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGC
519 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--TC-GAGCAT--CCGGAGAACCTGACCGGC
* * * *
19633508 GGCATTGGGTTTTCGATGATCGGGAGGGCTGCGGGGGGGTGTGCACACATGATGTGCAATGGGTG
579 GGCATTGGGGTTCCGACGATCGGGAGGGCTGCGGGGGGGTGTGCGCACATGATGTGCAATGGGTG
* * * * *
19633573 CTTGTACTTGGCCCTTATATAGGTCCCCTTTCCCTCATCAAACCTCGAGAACACACACCCTTTAA
644 CTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAA
* *
19633638 AGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTT
709 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
19633703 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTTATGCATGCCAA
774 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
19633768 CAAAAATACAAGGGTCACTTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
839 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
**
19633821 AAATTTTAAAAAATCCCGAACC-TCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
1 AAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
19633885 CTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTACAAATG
65 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
19633950 GCATTGGCATGCAAAAATGTGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCACGACTT
130 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
19634015 GCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGG
195 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCACTCGTTTCATCGGTTGGCTTAGG
* * * * * * *
19634080 CATACGGAGTTCATTCCCAGTATAAGATCAGATC-AGACCAAGGGTTATGGTAGTAGGATCAGTA
260 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTACGGCAGCAGGATCAGCA
* * * *
19634144 GCACACAGAGGAGGACCCGACTGATCCCCGACTTGCGCATCCTGCCCCTCT-GCTGACTGAGCGC
324 GCACACAGAGGGGGACCCGAC-CATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGC
* **
19634208 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAGCATATAGAG
388 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * *
19634273 TTCATTCCAAGTCTAAAATCAGACCAGACCGAGGGTTACAACAGCACATTCTGGGCTCAGGCATG
453 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATG
* ** **
19634338 TGCTGGTGCCGCATTTTTCTTCGCCAAGGCACCATCGTCAGAGCATCGTCGGAGAACCTGATTGG
518 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--TC-GAGCATC--CGGAGAACCTGACCGG
* * * * * *
19634403 CGACATTAGGGTTCCGATGATCGGGAGGGCCGAGGGGGGGTGTACGCACATGATGTGCAATGGGT
578 CGGCATTGGGGTTCCGACGATCGGGAGGGCTGCGGGGGGGTGTGCGCACATGATGTGCAATGGGT
* * * * *
19634468 GCTTGCACTTGGCCCTTATATAGGCCCCCTTTTCCTCATCAAACCTCGAGAACACACACCCCCTT
643 GCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTT
* * *
19634533 AAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCACTAAAGTGTTTGAAATGGGGACAC
707 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
19634598 -TTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTATGCATGCC
772 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
19634662 AAAAAAAATACAAGGGTCAAGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
837 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
19634717 AAATTTTAAAAAATCCTGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTC
1 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
***
19634782 TTG-CAGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTTGTAAAAATA
66 TTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-
19634846 GG-ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC-ATCCACGGCT
129 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
19634909 TGCGCATCTCGTCTCTCTGGCCGACGTAGTGTCCGCCCGCCCTCTCGCTCGCTCGTTTCATCGAT
194 TGCGCATCCCGTCTCTCTGGCCGGCGTA--GT--GCCCGCCC-GT--C-CACTCGTTTCATCGGT
* ** * *
19634974 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGGCAGTAG
251 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAG
** * * * * * * * *
19635039 GATC-GCCAGCACACAGAAAGGGACCTGGCTGATCCCTGGCTTACGTATCCCGCCCCTTTGGCCG
316 GATCAG-CAGCACACAGAGGGGGACCCGAC-CATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
* * * *
19635103 ACTGAGCGGCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTCCATTCCCAGTCTAAG
379 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
*** * * ** * *
19635168 ATCAGACTAGACCTAGG-GTTGCGATAGTAGAATTGGT-AGCA-CGTAGAGGGGGACCCGACCGA
444 --C--A-T--A-C--GGAGTT-C-AT--TCCCAGT-CTAAG-ATC--AGA-CCGGA-CCGA-GGG
* * * *** * * *
19635230 TCCT-CGGCATGCATATCCCTTCCCTCTGG--TCG-GCTGAGTGCCCGTAGGCTCATTTT-AT-G
488 T--TACGACA-GCACAT-GCTGGGCTCGGGCAT-GTGCTG-GTG-CCGCA---T--TTTTCTTCG
* ** * * ** * ** * * * * * *
19635289 -AGTTG-A-C-TTAG-GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC-CCAAT
541 TCGGGGCACCATTCGAGCATCCGGAGAACCTGACC-GGC--GGCAT-TGGGGTTC---CGACGAT
** * * ** * * * * * * *
19635348 CTAAGATCAGACTAGATTGAGGGTTGCAGCAGCACATGCTAG-GC--TCGG-GCATGTGC-TGGT
599 C-GGGA--GGGCT-G-CGGGGGGGTG-TGC-GCACATGAT-GTGCAATGGGTGCTTGTACTTGG-
* * ** **** * * *****
19635408 GCCGTAT-TTTTCTTCACCGGGGCACCATCGTCAGAGAACCT-GACCG-ACGGCATTGGGCTTCC
655 CCCTTATATTGGC--C-CCCTATC-CC-TCATC--A-AACCTCGA--GAAC-TCACACCCCTT--
* * * **** * ****** * * * ** *
19635470 GACGATCGGGGGGGCCGGGGC-GGTGTGC-GCACATGATGTGCGATGGGTGCTAGTACTTGGCCC
707 AAAGAGCATTTGAGATTTTACAGGTTTGCTGC-CA-G-T-AGCCA----T--TA--AAGT-G-TC
* * * ** * ** * *** ** * *
19635533 TTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACACACACCCCCTTAAAGAGCATTTGAGA
758 TGAAATGGGGACACT-T---TTTTCAAA--T-G-G-TCACA-A-AATCTTGTACA-C-TTTGAGT
** * * ** * * * * **
19635598 TTTTA---GAGGTTTGTTG-CCAGTAGCC-ATTAAAGTGTCTGAAATGGGGA-CACTTTTTTCAA
810 TTTTAGCTGAATTTTTTTGTGCA-T-GCCAAAAAAAAT-AC---AA---GGATCACGTCTACCAA
* *
19635657 --AT-GGTCACAAAATCTTGCACACTT-CGAGTTTTTAGA
866 GTTTGGGGC-CAAAA-C-T---C-CTTCCGA------A-A
* ** * ** *
19635693 TGAATGTTTTTATGACTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
1 --AA----ATT-T---T----A-AAAAAT-C-CCGAAC-CG--TAAAAAGTTT-----CAAAAAT
* * * **
19635758 CCTTTCGAAAAAAATTTTAAAAAATCCTGAACCCCGTAAAAAGTTTCAAAAATCGTCGGAAAAAT
41 -C-GT-G--AAAAA---TAGAAAA--C-G-A----GT----CG--TC-----T--T--G--CCAT
* * *
19635823 AGGAAAACGAGTTGTCTGCCATGAAAATTCACATGGGAGGCTCAAGGGACCATTGTATGAATTTA
73 --G--AA--A---------C-------TTCACGT-GAAGGCTTAAGGGACCATTGTATGAATTTA
** *
19635888 CAAGCCATAAAAATTCACAATTGTCATGCAGAAATATG-AGCATTGTGCCTAAACCCACCATACC
115 CAAGCCATAAAAA-TGGC-ATTGGCATGCAGAAATATGAAG-A-TGTGCCTAAACCCACC-TACC
* * * *
19635952 A-CCTATCGATCCA-AGCTTAGCGCATCCCGTCTCTCTGACCGGTGTAGTGCTGCACGCCCGCCC
175 ACCCTATCGATCCACGGCTT-GCGCATCCCGTCTCTCTGGCCGGCGTAGTGC--C-CGCCCGTCC
* * * * ** *
19636015 GCTCG-TT--TC--TTGGCTTA-G-ATAC-AAGTTCATTCCTAGTGTAAGATCAGAATG-ATCGA
236 ACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGA
* * * * ** ** * * * * *
19636071 GTGTGGA-AGTAGC-GGATTGGTTGCACGCCGAGGGGGACCCGAAGTCAATGCCC-GC-TGTGCA
301 GGGT-TACGGCAGCAGGATCAGCAGCACACAGAGGGGGACCCG-A--CCATCCCCGGCTTGCGCA
** * * * *
19636132 TCCCACCCCTCTGTCAG-C-GAGCGCCTGCA---TC--TCCGT--GTTGACTTAGGCATACGGAG
362 TCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * *
19636188 TTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGCTAC
427 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTAC
** *
19636253 GGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA-TC--
492 GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTCGA
* ** * * * *
19636315 G--T-CGGAGAACCTGTCCAACGGCATTGGGGTTTCGACGATC--AAGGGGT-CGAGGGGGTGTG
557 GCATCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGAGGGCTGCGGGGGGGTGTG
19636374 CGCACATGATGTGCAATGGGTG-TTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
622 CGCACATGATGTGCAATGGGTGCTT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
19636438 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCAATT
686 CCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
19636503 AAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACTAAATCTTGTACACTTTGAGTTTTTA
750 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTA
*
19636568 GCTGAATTTTTTTGTGCATGCCAAAAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
815 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
*
19636633 ATCCTTCC-AAA
880 CTCCTTCCGAAA
** * * *
19636644 ACAATTTTAAAAAATCTTGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
1 A-AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
19636709 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
65 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
19636774 GCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
130 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
19636839 GCGCATCCCGTTTTTCTAGCCGGCGTAGTGCCCGCCCGCCCCTCCACCCGTTCATTTCGTCGGTT
195 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG----TCCA--C--TCGTTTCATCGGTT
* * * **
19636904 GGCCTAGGGATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTC-AGGGTTGTGGCAGCAG
252 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAAC-CGAGGGTTACGGCAGCAG
* * * * * *
19636968 GATCAGCAGCACGCAAAGAGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGACGG
316 GATCAGCAGCACACAGAGGGGGACCCGACC-ATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGA
* * * * *
19637033 CTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAAGCGTACGGAGTTCATTCCCAG--T---C
380 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * ** *
19637093 -TA---AG-T--TT----G-----GAT-----TGGACTGAGGGTTGTGGCCA-CACATGCTGGGC
445 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-ACGACAGCACATGCTGGGC
* * *
19637136 TTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACTATCATCAGAGCATCATCGGAGAA
509 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--TC-GAGCATC--CGGAGAA
* *
19637201 CCTGACCGGCGGCATTGGGGTTCCGACGATTGGG-GGG--GC-GGGGCGTGTGCGCACATGATGT
569 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGAGGGCTGCGGGGGGGTGTGCGCACATGATGT
* * * * **
19637262 ACGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATTGCTCATCAAACCTCGAGAACTCA
634 GCAATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
19637327 CACCCCCTTAAAGGGCATTTGAGATTTTGCTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
699 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* ** * **
19637392 TTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGACGTTTTTT
763 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
* * * **
19637457 GTGCATGCCGAAAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTTGAAA
828 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** * *
19637521 AAATTTTAAAAAATCCCAAACCATAAAAAGTTTTGAAAATCGTGAGAAATAGAAAGCGAGTCGTC
1 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
19637586 TTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
66 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
19637651 CATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
131 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
19637716 CGCATCCCGTCTCTCTGGCCGACATTGTGCCCGCCTGCCCGTCCGGCCGCTCGTTTCGTCGGTTA
196 CGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGT----CCACTCGTTTCATCGGTTG
* * * * * *
19637781 GCTTAGGCATAAGGAGTTCATTCCCAGTCTCAGATTAGATCGGACCGAGGGTTACGGCAACAGGA
253 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGA
** * * * * *
19637846 TCAGCAGCACGTAGAGGGGGACCCGATCGATCCTCGGGTTGCGCAT-CTCGGCCCTCTGGCCGGC
318 TCAGCAGCACACAGAGGGGGACCCGA-CCATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGAC
* * * * *
19637910 TGAACACGCGCACGTTCGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTC-AAGCA
381 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * ** *
19637974 TACGGAGCTCATTCCCAGTCTAAGATCGGATGGGACCGAGGGTTAC-AGCAGCACATGCGGGGCT
446 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGA-CAGCACATGCTGGGCT
* * *
19638038 CGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCAAAGCATCGCGAGAGAAC
510 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--TC-GAGCATC-CG-GAGAAC
* * * * * * *
19638103 CTAACCAGTGGCGTTGGGGTTCCTG-CGGTCGGGGGGGC--CGGGGGGGTGTGCGCACAAGATGT
570 CTGACCGGCGGCATTGGGGTTCC-GACGATCGGGAGGGCTGCGGGGGGGTGTGCGCACATGATGT
*** *
19638165 TTGATGGGTGC-TGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTC
634 GCAATGGGTGCTTG-TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
19638229 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAA
698 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * * * *
19638294 ATGAGGACACGTTTTTCAGATCGTCACAAAATCTTGAACACTTCGACTTTTTAGCTGAATTTTTT
762 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
* * *
19638359 TGTGCATCCCAAAAAAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
827 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** * *
19638424 AAATTTTAAAAAATCTCGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATC
1 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
19638489 TTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCAAAAAAATGG
66 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19638554 CATTGGTATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
131 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
19638619 CGCATCCCATCTTTCTAGG-CGGCGTAGTGCCCGCCCG----CTCGTTTCATCGGTTGGCTTAGG
196 CGCATCCCGTCTCTCT-GGCCGGCGTAGTGCCCGCCCGTCCACTCGTTTCATCGGTTGGCTTAGG
* * * * * * * * * *
19638679 CATACAGAGTTCATTCCCAATCTAAGGTTAAATCGGACCGAGGGTTATGGCAGCAGGATCGGTAG
260 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATCAGCAG
* * * * **
19638744 CACACAAAAGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCGATGGCCGACTGAGCGCC
325 CACACAGAGGGGGACCCGACC-ATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCC
* * *
19638809 CGCACGTTCGTGTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGT
389 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * * *
19638874 TCATTACCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAACACATGCTGGGATCGGGCATGT
454 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGT
* * * * * * * * *
19638939 GCTTGTGCCGGATGTTTCTTCATCGGGGCACCA-TC--GC-T--GGATAACCTAATCGGTGGTAT
519 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTCGAGCATCCGGAGAACCTGACCGGCGGCAT
** * ** *
19638998 TGGGGTTCCGGTGATCGAGG-GGGCTG-GGTGGGGTGTGCGCACATGATGTGCGTTGGGTGCTGG
584 TGGGGTTCCGACGATCG-GGAGGGCTGCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTTG
** * * * * *
19639061 TGGTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACTTCAAGAACCCACACCCCTTAAAGGG
648 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAG
* *
19639126 CATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTT
713 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
19639191 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
778 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* * *
19639256 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAA
843 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
19639305 ATATTTTAAAAAATCCCAAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAGCGAGTCGTC
1 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
19639370 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAGTGTATGAATTCAAAAGCCATAAAAATGG
66 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19639435 CATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
131 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
19639500 CGCATCCCGTCTCTCTGGCCGGTGTAGCGCCCGCCCG----CTCATTTCTTTGGCTGGCTTAGGC
196 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCACTCGTTTCATCGGTTGGCTTAGGC
* * * *
19639561 ATACGAATTTCATTCCCAGTCTAAGATCAGA-CTAGACCGAGGGTTA-GGCAGCAGGATCAACAG
261 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTACGGCAGCAGGATCAGCAG
* * * * * * * * * * *
19639624 CACATAGAGGGGGCCCCGACCAATCCTCGACTTGTGCACCCTGACCCTCTGGTCTACTGAACACC
325 CACACAGAGGGGGACCCGACC-ATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCC
*
19639689 CGCACGCTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G-
389 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * *
19639749 --A-T----G-----G----GATC-TA--GA--GTTAC-AGCAGCAAATGCTGGGCTCGGGCATG
454 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGA-CAGCACATGCTGGGCTCGGGCATG
** * * *
19639792 TGCTGGTGCCATATTTTTCTTCGTCGGGGCACCA-TC--G--T-CGGAGAACCTGACCAGCGACG
518 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTCGAGCATCCGGAGAACCTGACCGGCGGCA
** *
19639851 TTGGGGTTCCGACGATCGGGAGGGC--C-GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGG
583 TTGGGGTTCCGACGATCGGGAGGGCTGCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTTG
* *
19639913 TACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGACAACTCACACCCTCTTAAAGA
648 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC-CTTAAAGA
* * * *
19639978 GCATTTGAAATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTTAAATAGGGACACTTTTT
712 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * *
19640043 TCAAATGGTAACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
777 TCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * *
19640108 AAATACAAGGATCACATCTACCAAGTTTGGGGACAAAACTCCTTTCGAAA
842 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** ** * * *
19640158 AAATTTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCATAAAAAATAGAAAA-GAAGTCAT
1 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG-AGTCGT
* * *
19640222 CTTGCCATGAAACTTCACGTAAAGGCTTAAGTGACCATTGTATGAATTTACAGGCCATAAAAATG
65 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
19640287 GCATTGGCATGTAGAAATATGAAGATCTACCTAAACCCACCTACCACCCTATCAATCCACGGCTT
130 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
19640352 GCGCATCCCGTCTCTTTGGTCGGCGTAGTGCCCTCCCGCTCGTTCGATCGCCCGCTCGCCCGTTC
195 GCGCATCCCGTCTCTCTGGCCGGCGTA--G---T---G--C---C---CGCCCG-TC-CAC--TC
* * * * *
19640417 GTTTTATCGGTTGGCTTTGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACC-AGACCAAAGG
240 GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGG
* * ** * ** * * *
19640481 TTACGGAAGCAGGATCAGTAGCACGTAAAAAGGTACCCGACCAATCCTCGGCTTGTGCATCCTGC
304 TTACGGCAGCAGGATCAGCAGCACACAGAGGGGGACCCGACC-ATCCCCGGCTTGCGCATCCTGC
* * * * ** *
19640546 CCATCTAGCCGGCTGAGCGCCCGCACGCTTC-TTTCATGGGTTGACTTAGGTGTATGGAGTTCAT
368 CCCTCTGGCCGACTGAGCGCCCGCACGC-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
19640610 TTCCAATCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCAGACTGGACCGAGGGTTGCGACAG
432 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAG
* * * * *
19640675 CACATGCAGGGCTCAGGCATATGCTGGTGCCACATTTTTCTTCGTCGAGGCACCA-TC--G--T-
497 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTCGAGCATC
* * * * *
19640734 CGGAGAACCTGACCAGTGACATTGGGGTTCCGACGATCGGG-GGGTTAAGCGGGGGGG-CTGCGC
562 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGAGGGCT--GCGGGGGGGTGTGCGC
*
19640797 ACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTG
625 ACATGATGTGCAATGGGTGCTTGTACTTGGCCCTTATATTG
19640838 CCAAGAAACT
Statistics
Matches: 6399, Mismatches: 1045, Indels: 906
0.77 0.13 0.11
Matches are distributed among these distances:
852 82 0.01
853 368 0.06
854 89 0.01
855 1 0.00
856 2 0.00
858 1 0.00
859 4 0.00
861 1 0.00
863 2 0.00
865 6 0.00
866 62 0.01
867 7 0.00
868 55 0.01
869 32 0.01
870 4 0.00
871 45 0.01
872 8 0.00
873 6 0.00
874 229 0.04
875 255 0.04
876 616 0.10
877 98 0.02
878 123 0.02
879 10 0.00
880 132 0.02
881 496 0.08
882 94 0.01
883 42 0.01
884 3 0.00
885 131 0.02
886 5 0.00
887 7 0.00
888 3 0.00
889 2 0.00
890 8 0.00
891 171 0.03
892 129 0.02
893 1 0.00
894 3 0.00
895 37 0.01
896 1002 0.16
897 145 0.02
898 3 0.00
899 15 0.00
900 8 0.00
901 103 0.02
902 10 0.00
903 564 0.09
904 164 0.03
905 3 0.00
906 1 0.00
907 45 0.01
908 7 0.00
909 1 0.00
911 3 0.00
913 3 0.00
914 2 0.00
915 3 0.00
916 1 0.00
917 7 0.00
918 9 0.00
919 11 0.00
920 6 0.00
921 8 0.00
922 13 0.00
923 8 0.00
924 15 0.00
925 16 0.00
926 2 0.00
927 14 0.00
928 13 0.00
929 11 0.00
930 7 0.00
931 12 0.00
932 12 0.00
934 4 0.00
935 15 0.00
936 11 0.00
937 14 0.00
938 2 0.00
939 3 0.00
942 1 0.00
945 3 0.00
946 2 0.00
947 2 0.00
948 1 0.00
949 9 0.00
950 1 0.00
951 2 0.00
952 1 0.00
954 6 0.00
956 1 0.00
957 1 0.00
958 5 0.00
959 8 0.00
960 14 0.00
961 12 0.00
962 10 0.00
963 13 0.00
964 16 0.00
965 14 0.00
966 9 0.00
967 11 0.00
968 15 0.00
969 9 0.00
970 4 0.00
971 1 0.00
972 1 0.00
974 6 0.00
975 1 0.00
976 1 0.00
977 1 0.00
978 13 0.00
979 1 0.00
980 2 0.00
982 4 0.00
983 1 0.00
984 1 0.00
986 1 0.00
988 3 0.00
989 1 0.00
990 8 0.00
991 17 0.00
992 12 0.00
993 6 0.00
994 1 0.00
995 5 0.00
996 20 0.00
997 5 0.00
998 10 0.00
999 9 0.00
1000 6 0.00
1001 8 0.00
1002 1 0.00
1003 2 0.00
1004 1 0.00
1005 1 0.00
1006 9 0.00
1008 5 0.00
1009 10 0.00
1011 5 0.00
1012 11 0.00
1013 4 0.00
1014 2 0.00
1015 2 0.00
1016 14 0.00
1017 12 0.00
1018 9 0.00
1019 1 0.00
1020 3 0.00
1021 4 0.00
1022 3 0.00
1023 4 0.00
1024 348 0.05
1025 390 0.06
1026 420 0.07
1027 411 0.06
1028 408 0.06
1029 349 0.05
1030 460 0.07
1031 250 0.04
1032 321 0.05
1033 315 0.05
1034 308 0.05
1035 201 0.03
1036 344 0.05
1037 265 0.04
1038 353 0.06
1039 212 0.03
1040 246 0.04
1041 290 0.05
1042 233 0.04
1043 183 0.03
1044 175 0.03
1045 153 0.02
1046 195 0.03
1047 368 0.06
1048 367 0.06
1049 114 0.02
1050 81 0.01
1051 143 0.02
1052 123 0.02
1053 264 0.04
1054 111 0.02
1055 120 0.02
1056 63 0.01
1057 110 0.02
1058 110 0.02
1059 202 0.03
1060 228 0.04
1061 305 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCACTCGTTTCATCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATCAGCAGC
ACACAGAGGGGGACCCGACCATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGC
TGGTGCCGCATTTTTCTTCGTCGGGGCACCATTCGAGCATCCGGAGAACCTGACCGGCGGCATTG
GGGTTCCGACGATCGGGAGGGCTGCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTTGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
Found at i:19635247 original size:159 final size:159
Alignment explanation
Indices: 19634958--19635326 Score: 382
Period size: 159 Copynumber: 2.3 Consensus size: 159
19634948 CCCTCTCGCT
* * * * *
19634958 CGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTG
1 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
* * * * * * *
19635023 AGGGTTGCGGCAGTAGGATCGCCAGCACACAGAAAGGGACCTGGCTGATCCCTGGCTTACGTATC
66 AGGGTTGCGACAGTAGAATCGCCAGCACACAGAAAGGGACCCGACCGATCCCTGGCATACATATC
* * *
19635088 CCGCCCCTTTGGCCGACTGAGCGGCTGCA
131 CCGCCCCTCTGGCCGACTGAGCGCCCGCA
* *
19635117 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTCCATTCCCAGTCTAAGATCAGACTAGACCT
1 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CT
* * ** ** ** *
19635182 -AGGGTTGCGATAGTAGAATTGGTAGCACGTAGAGGGGGACCCGACCGAT-CCTCGGCATGCATA
65 GAGGGTTGCGACAGTAGAATCGCCAGCACACAGAAAGGGACCCGACCGATCCCT-GGCATACATA
** * * * *
19635245 TCCCTTCCCTCTGGTCGGCTGAGTGCCCGTA
129 TCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
* * * *
19635276 GGCTCATTTTATGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
19635327 CATACGGAGT
Statistics
Matches: 171, Mismatches: 37, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
158 3 0.02
159 167 0.98
160 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (159 bp):
CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
AGGGTTGCGACAGTAGAATCGCCAGCACACAGAAAGGGACCCGACCGATCCCTGGCATACATATC
CCGCCCCTCTGGCCGACTGAGCGCCCGCA
Found at i:19635336 original size:26 final size:26
Alignment explanation
Indices: 19635300--19635352 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19635290 GTTGACTTAG
*
19635300 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19635326 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19635352 G
1 G
19635353 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19636214 original size:26 final size:26
Alignment explanation
Indices: 19636178--19636230 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19636168 GTTGACTTAG
19636178 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19636204 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19636230 G
1 G
19636231 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19637980 original size:25 final size:25
Alignment explanation
Indices: 19637946--19637993 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
19637936 GTTGACCTAG
*
19637946 GCATACGGAGTTCATTCCCAGTCAA
1 GCATACGGAGCTCATTCCCAGTCAA
19637971 GCATACGGAGCTCATTCCCAGTC
1 GCATACGGAGCTCATTCCCAGTC
19637994 TAAGATCGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (25 bp):
GCATACGGAGCTCATTCCCAGTCAA
Found at i:19638873 original size:26 final size:26
Alignment explanation
Indices: 19638837--19638889 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19638827 GTTGACTTAG
*
19638837 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTACCAATCTAA
*
19638863 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAATCTAA
19638889 G
1 G
19638890 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAATCTAA
Found at i:19639474 original size:881 final size:877
Alignment explanation
Indices: 19635117--19640837 Score: 6068
Period size: 876 Copynumber: 6.5 Consensus size: 877
19635107 AGCGGCTGCA
* * * * * *
19635117 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTCCATTCCCAGTCTAAGATCAGA-CTAGACC
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAATC-AGACC
* * * * ** * * * * * * **
19635181 TAGGGTT-GCGATAGTAGAATTGGTAGCACGTAGAGGGGGACCCGACCGATCCTCGGCATGCATA
65 GAGGGTTAG-G-CAGCAGGATCAGCAGCACGCAAAAGGGGACCCGACCAATCCTCGGCTTGCGCA
** * ** * * * ** *
19635245 TCCCTTCCCTCTGGTCGGCTGAGTGCCCGTAGGCTCATTTTATGAGTTGACTTAGGCATACGGAG
128 TCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGTTC-TTTCGTGGGTTGACTTAGGCATACGGAG
* * * **
19635310 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGA-CTAGATTGAGGGTTG
192 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTG
* * **
19635374 C-AGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCG
256 CGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * *
19635438 TCAGAGAACCTGACC-GACGGCATTGGGCTTCCGACGATCGGGGGGGCCGGGGCGGTGTGCGCAC
320 TCGGAGAACCTGACCAG-CGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGTGCGCAC
* *
19635502 ATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGA
383 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
19635567 GAACACACACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGTTGCCAGTAGCCATTAAAGTG
448 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
19635632 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGATGAA
513 TCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
19635697 TGTTTTTATG-ACTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
577 TTTTTTTGTGCA-TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
** *
19635761 TTCGAAAAAAATTTTAAAAAATCCTGAACCCCGTAAAAAGTTTCAAAAATCGTCGGAAAAATAGG
641 TTCG-AAAAAATTTTAAAAAATCCCAAACCAC--AAAAAGTTTCAAAAATCGT--GAAAAATA-G
* * * * *
19635826 AAAACGAGTTGTC-TGCCATGAAAATTCACATGGGAGGCTCAAGGGACCATTGTATGAATTTACA
700 AAAACGAGTCGTCTTGCCATGAAACTTCACGT-GAAGGCTTAAGGGACCATTGTATGAATTTACA
** *
19635890 AGCCATAAAAATTCACAATTGTCATGCAGAAATATG-AGCATTGTGCCTAAACCCACCATACCA-
764 AGCCATAAAAA-TGGC-ATTGGCATGCAGAAATATGAAG-A-TGTGCCTAAACCCACC-TACCAC
* * *
19635953 CCTATCGATCCA-AGCTTAGCGCATCCCGTCTCTCTGACCGGTGTAGTGCTGCACGCC
824 CCTATCGATCCACGGCTT-GCGCATCCCGTCTCTCTGGCCGGCGTAGTGC--C-CGCC
* * *** * * *
19636010 CGCCCG-CTCGTTTCTTGGCTTA-G-ATACA-AGTTCATTCCTAGTGTAAGATCAGAAT--GATC
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA-AATCAGACC
* * * * ** ** ** * * *
19636069 GAGTGTGGAAGTAGC-GGATTGGTTGCACGCCGAGGGGGACCCGAAGTCAATGCC-C-GC-TGTG
65 GAGGGT-TAGGCAGCAGGATCAGCAGCACGCAAAAGGGGACCCG-A-CCAAT-CCTCGGCTTGCG
* * * * * *
19636130 CATCCCACCCCTCT-GTCAGC-GAGCGCCTGCA---TC-TCCGT--GTTGACTTAGGCATACGGA
126 CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGTTCTTTCGTGGGTTGACTTAGGCATACGGA
* * * * * *
19636187 GTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGCTA
191 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTG
** *
19636252 CGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGT
256 CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * * ** * *
19636317 CGGAGAACCTGTCCAACGGCATTGGGGTTTCGACGATCAAGGGGTCGAGGGGGTGTGCGCACATG
321 CGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATG
* *
19636382 ATGTGCAATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
386 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
19636447 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCAATTAAAGTGTCT
451 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
19636512 TAAATGGGGACACTTTTTTCAAATGGTCACTAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
516 GAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
*
19636577 TTTTGTGCATGCCAA-AAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC-TTC
580 TTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* *** ** *
19636640 CAAAACAATTTTAAAAAATCTTGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
644 GAAAA-AATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
19636705 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
708 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
19636770 AATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
773 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
19636835 GCTTGCGCATCCCGTTTTTCTAGCCGGCGTAGTGCCCGCC
838 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * *
19636875 CGCCCCTCCACCCGTTCATTTCGTCGGTTGGCCTAGGGATACGGAGTTCATTCCCAGTCTAAGAT
1 CG---CT-----CG----TTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
* * * * * *
19636940 CAGACCAAACTC-AGGGTTGTGGCAGCAGGATCAGCAGCACGC-AAAGAGGGACCCGGCCGATCC
54 CAAATCAGAC-CGAGGGTT-AGGCAGCAGGATCAGCAGCACGCAAAAG-GGGACCCGACCAATCC
* * * * *
19637003 CCGGCTTGCGCATCCTGCCCCTCTGGACGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTT
116 TCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGTTC-TTTCGTGGGTTGACTT
* *
19637068 AAGCGTACGGAGTTCATTCCCAG--T---C-TA---AG-T--TT----G-----GAT----T-GG
180 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGG
* * * * *
19637107 ACTGAGGGTTGTGGCCA-CACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCG
245 ACCGAGGGTTG-CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* *
19637171 GGGCACTATCATCAGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGG
309 GGGCAC---CATC---G-----TCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGG
* * *
19637236 GGGC-GGGGCGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCC
363 GGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
** * * *
19637300 TATTGCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTGCTGGTTTGC
428 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
19637365 TGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
493 TGCCAGTAGCCATTAAAGTGTCTGAAA-TGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * ** *
19637430 ACTTCAATTTTTTAGCTGACGTTTTTTGTGCATGCCGAA-AAAAATACAAGAATCACGTCTACCA
557 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCA
* * * **
19637494 AGTTTGGGGCCAAAACACCTTTTGAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTTGAAA
621 AGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAA
* * *
19637559 ATCGTGAGAAATAGAAAGCGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATT
686 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
** *
19637624 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCA
751 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * *
19637689 CCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACATTGTGCCCGCCTGC
816 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC---GT---AG--TGC
19637754 CCGTCCGGC
873 CCG--C--C
* * * * *
19637763 CGCTCGTTTCGTCGGTTAGCTTAGGCATA-AGGAGTTCATTCCCAGTCTCAGATTAGATCGGACC
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACA-GAGTTCATTCCCAGTCTAAGATCAAATCAGACC
* * * * * * *
19637827 GAGGGTTACGGCAACAGGATCAGCAGCACGTAGAGGGGGACCCGATCGATCCTCGGGTTGCGCAT
65 GAGGGTTA-GGCAGCAGGATCAGCAGCACGCAAAAGGGGACCCGACCAATCCTCGGCTTGCGCAT
* * * * *
19637892 CTCGGCCCTCTGGCCGGCTGAACACGCGCACGTTCGTTTCGTGGGTTGACCTAGGCATACGGAGT
129 CCCGCCCCTCTGGCCGGCTGAGCACCCGCACGTTC-TTTCGTGGGTTGACTTAGGCATACGGAGT
* * *
19637957 TCATTCCCAGTC-AAGCATACGGAGCTCATTCCCAGTCTAAGATCGGATGGGACCGAGGGTTAC-
193 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCG
* * *
19638020 AGCAGCACATGCGGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTC
258 A-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC
* * * *
19638085 AAAGCATCGCGAGAGAACCTAACCAGTGGCGTTGGGGTTCCTG-CGGTCGGGGGGGCCGGGGGGG
319 ---G--T--CG-GAGAACCTGACCAGCGGCATTGGGGTTCC-GACGATCGGGGGGG-CGGGGGGG
* ** *
19638149 TGTGCGCACAAGATGTTTGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
374 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
19638214 AAACCTCGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCC
439 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * * *
19638279 ATTAAAGTGTCTGAAATGAGGACACGTTTTTCAGATCGTCACAAAATCTTGAACACTTCGACTTT
504 ATTAAAGTGTCTGAAATG-GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
19638344 TTAGCTGAATTTTTTTGTGCATCCCAAAAAAAACACAAGGATCACGTCTACCAAGTTTGGGGCCA
568 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * *
19638409 AAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTTAAAAATCGTGAAAAAT
633 AAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAAT
* *
19638474 AGAAAACGAGTCATCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTAC
698 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * *
19638539 AGGCCAAAAAAATGGCATTGGTATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
763 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
19638604 TCGATCCACAGCTTGCGCATCCCATCTTTCTAGG-CGGCGTAGTGCCCGCC
828 TCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGCCGGCGTAGTGCCCGCC
* * * * *
19638654 CGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGGTTAAATCGGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAATCAGACCG
* * * *
19638719 AGGGTTATGGCAGCAGGATCGGTAGCACACAAAAGGGGACCCGACCGATCC-CTGGCTTGCGCAT
66 AGGGTTA-GGCAGCAGGATCAGCAGCACGCAAAAGGGGACCCGACCAATCCTC-GGCTTGCGCAT
** * * *
19638783 CCCGCCCCGATGGCCGACTGAGCGCCCGCACGTTCGTGTCGTGGGTTGACTTAGGCATACGGAGT
129 CCCGCCCCTCTGGCCGGCTGAGCACCCGCACGTTC-TTTCGTGGGTTGACTTAGGCATACGGAGT
* *
19638848 TCATTCCCAATCTAAGCATACGGAGTTCATTACCAGTCTAAGATCGGATCGGACCGAGGGTTGCG
193 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCG
* * * * * *
19638913 ACAACACATGCTGGGATCGGGCATGTGCTTGTGCCGGATGTTTCTTCATCGGGGCACCATCG-CT
258 ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-
* * * * * * ** *
19638977 GGATAACCTAATCGGTGGTATTGGGGTTCCGGTGATCGAGGGGGCTGGGTGGGGTGTGCGCACAT
322 GGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGC-GGG-GGGGTGTGCGCACAT
* ** * * *
19639042 GATGTGCGTTGGGTGCTGGTGGTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACTTCAAGA
385 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
19639107 ACCCACA-CCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTC
450 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
19639171 TGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
515 TGAAATGGG-ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
*
19639236 TTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACT-CTTTC
579 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* ** * *
19639300 TGAAAATATTTTAAAAAATCCCAAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAGCGAG
644 -GAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* * *
19639365 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAGTGTATGAATTCAAAAGCCATAAA
708 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
19639430 AATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
773 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
19639495 ACTTGCGCATCCCGTCTCTCTGGCCGGTGTAGCGCCCGCC
838 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * * * * *
19639535 CGCTCATTTCTTTGGCTGGCTTAGGCATAC-GAATTTCATTCCCAGTCTAAGATCAGA-CTAGAC
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCAAATC-AGAC
* ** * * * * *
19639598 CGAGGGTTAGGCAGCAGGATCAACAGCACATAGAGGGGGCCCCGACCAATCCTCGACTTGTGCA-
64 CGAGGGTTAGGCAGCAGGATCAGCAGCACGCAAAAGGGGACCCGACCAATCCTCGGCTTGCGCAT
* * ** * * *
19639662 CCCTGACCCTCTGGTCTACTGAACACCCGCACGCTCGTTTCTTGGGTTGACTTAGGCATACGGAG
129 CCC-GCCCCTCTGGCCGGCTGAGCACCCGCACGTTC-TTTCGTGGGTTGACTTAGGCATACGGAG
* *
19639727 TTCATTCCCAGTCTAAG-AT-C-G-G---------A---T--G---GGATC-TA--GA--GTTAC
192 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGC
* **
19639766 -AGCAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGT
257 GA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * * *
19639830 CGGAGAACCTGACCAGCGACGTTGGGGTTCCGACGATCGGGAGGGCCGGGGGGTGTGCGCACATG
321 CGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATG
* * *
19639895 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGACAA
386 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
19639960 CTCACACCCTCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCT
451 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
19640025 TAAATAGGGACACTTTTTTCAAATGGTAACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTT
516 GAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
19640090 TTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGACAAAACTCCTTTCG
580 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * ** * *
19640155 AAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCATAAAAAATAGAAAA-GAAGT
645 AAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG-AGT
* * * *
19640219 CATCTTGCCATGAAACTTCACGTAAAGGCTTAAGTGACCATTGTATGAATTTACAGGCCATAAAA
709 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
19640284 ATGGCATTGGCATGTAGAAATATGAAGATCTACCTAAACCCACCTACCACCCTATCAATCCACGG
774 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
19640349 CTTGCGCATCCCGTCTCTTTGGTCGGCGTAGTGCCCTCCCGCTCGTTCGATCGCC
839 CTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G---T---G--C---C---CGCC
* * *
19640404 CGCTCGCCCGTTCGTTTTATCGGTTGGCTTTGGCATACGGAGTTCATTCCCAGTCTAAGATCAAA
1 CGCTCG---TTTCG-----TCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAA
* * * * * * * *
19640469 CCAGACCAAAGGTTACGGAAGCAGGATCAGTAGCACGTAAAAAGGTACCCGACCAATCCTCGGCT
58 TCAGACCGAGGGTTA-GGCAGCAGGATCAGCAGCACGCAAAAGGGGACCCGACCAATCCTCGGCT
* * * * * * **
19640534 TGTGCATCCTGCCCATCTAGCCGGCTGAGCGCCCGCACGCTTCTTTCATGGGTTGACTTAGGTGT
122 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACG-TTCTTTCGTGGGTTGACTTAGGCAT
* * * * *
19640599 ATGGAGTTCATTTCCAATCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCAGA-CTGGACCGA
186 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGA
* * * * *
19640663 GGGTTGCGACAGCACATGCAGGGCTCAGGCATATGCTGGTGCCACATTTTTCTTCGTCGAGGCAC
250 GGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * *
19640728 CATCGTCGGAGAACCTGACCAGTGACATTGGGGTTCCGACGATCGGGGGGTTAAGCGGGGGGG-C
315 CATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGG----GCGGGGGGGTG
*
19640792 TGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTG
376 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
19640838 CCAAGAAACT
Statistics
Matches: 4077, Mismatches: 547, Indels: 394
0.81 0.11 0.08
Matches are distributed among these distances:
852 78 0.02
853 364 0.09
854 98 0.02
855 2 0.00
856 2 0.00
858 1 0.00
859 5 0.00
861 1 0.00
862 1 0.00
863 1 0.00
864 1 0.00
865 6 0.00
866 61 0.01
867 8 0.00
868 55 0.01
869 35 0.01
870 4 0.00
871 57 0.01
872 28 0.01
873 2 0.00
874 18 0.00
875 5 0.00
876 627 0.15
877 353 0.09
878 289 0.07
879 15 0.00
880 138 0.03
881 496 0.12
882 94 0.02
883 37 0.01
884 12 0.00
885 20 0.00
886 9 0.00
887 40 0.01
888 18 0.00
889 27 0.01
890 12 0.00
891 179 0.04
892 138 0.03
893 7 0.00
894 1 0.00
895 6 0.00
896 4 0.00
897 1 0.00
898 6 0.00
899 2 0.00
900 8 0.00
901 99 0.02
902 8 0.00
903 443 0.11
904 103 0.03
905 1 0.00
907 43 0.01
908 8 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (877 bp):
CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAATCAGACCG
AGGGTTAGGCAGCAGGATCAGCAGCACGCAAAAGGGGACCCGACCAATCCTCGGCTTGCGCATCC
CGCCCCTCTGGCCGGCTGAGCACCCGCACGTTCTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACA
GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
AACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
TTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
Found at i:19642139 original size:26 final size:26
Alignment explanation
Indices: 19642087--19642139 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19642077 GTTGACTTAG
* *
19642087 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
*
19642113 GCATACAAAGTTCATTCCCAATGTAA
1 GCATACAAAGTTCATTCCCAATCTAA
19642139 G
1 G
19642140 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAATCTAA
Found at i:19642654 original size:904 final size:902
Alignment explanation
Indices: 19640835--19644680 Score: 4672
Period size: 904 Copynumber: 4.3 Consensus size: 902
19640825 GGCCCTTATA
* * *
19640835 TTGCCAAGAAACTTCACGTAAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
19640900 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
66 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * **
19640965 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGTCAGCCCGCCCGCTCGTTTTATC-GATT
131 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC-C-CCTGCCCGCCCGCTCGTTTCGTCAG-TT
* ** ** ** *
19641029 GGCTTGGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC-GAACTAAGGGTTGAAGCAGCAG
193 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGTAGCAG
* * * ** * * *
19641093 GATCGGTAGCACGTAGAGGAGGACCCG-GTCGATCCCTGGCTTACGCATCTCACCCCTCTGG-TC
257 GATCGGTAGCACATAGAGGGGGACCCGACTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTC
* * * * *
19641156 GGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCGTACGGAGTTCATTCCTAGTCTAA
322 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
** * *
19641221 GCA-A-AAGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAACACAAGCTG
387 GCATACAA--AGTTCATTCCCAGTCTAAGATCAGACCGGAACGAGGGTTACGGCAACACAAGCTG
* * * * * *
19641284 GCCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCA--TC---G---C-CGAAGA
450 GGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATCTCGGAGCATCGCGGAGA
* * * * * * * *
19641340 ACCTGACCGGCAGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGTTGTGCGCACATGAGGTGT
515 ACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGC
* *
19641405 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA-TCCCTCGTCAAACCTTGAGAACTCAC
580 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCCTCATCAAACCTCGAGAACTCAC
* * * *
19641469 ACCCCCTTAAAAAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
645 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
*
19641534 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTG
710 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19641599 TGCGTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAT
775 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAA
** *
19641664 ATTTTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTC
840 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
19641727 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCAGAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** * * *
19641792 CATTAGCACACAGAAGTATGAAGATGTGACTAAACCCACCAACCACCCTATCGATCCACGGCTTG
66 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * **
19641857 CGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCAGCCTGCCCGCCCACTCGTTTCGTCAGTAA
131 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC--CCTGCCCGCCCGCTCGTTTCGTCAGTTG
* * *
19641922 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATACCAGACCGAGGGATGCGGTAGTAGGA
194 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGA
* *
19641987 TCGGCAGCACATAGAGGGGGACCTGACT-GATCCCCAGCTTGCGCATCCCGCCCCTCTGGCT-GG
259 TCGGTAGCACATAGAGGGGGACCCGACTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTCGG
*
19642050 TTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
324 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
* * * * * * *
19642115 ATACAAAGTTCATTCCCAATGTAAGATCAGATCGGAATGAGGGTTGCGGCAGCACATGCCT-GGC
389 ATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAGGGTTACGGCAACACAAG-CTGGGC
*
19642179 TCGAGCATGTGCTGGTGCCGTATTTTTCTTTGCCAGGGCACCATCGTCGGAGCATCGCTGGAGAA
453 TCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATC-TCGGAGCATCGC-GGAGAA
* *
19642244 CCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGGCCGAGGGGGTGTTCACACATGATGTAC
516 CCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGGCCG-GGGGGTGTGCACACATGATGTGC
* * * * *
19642309 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTA-TCCTTTATCGAACCTCAAGAACTCAC
580 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCCTCATCAAACCTCGAGAACTCAC
19642373 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
645 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
*
19642438 GTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
710 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
19642503 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTAAAAACTCCTTCCAAAAAA
775 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAA
* *
19642568 ATTTTCAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
840 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * ** *
19642631 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGATTTTACAAGAAATAAGAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
19642696 CATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
66 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
19642761 CGCATCCTGTCTCTCTGGCCGACGTAGTGCTCC-CCCCTCGCCCGCCCGCTCGTTTCGTCGGTTG
131 CGCATCCCGTCTCTCTGGCCGACGTAGTGC-CCGCCCCT-GCCCGCCCGCTCGTTTCGTCAGTTG
*
19642825 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACTGAGGGTTGC-GTAGCAGG
194 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGTAGCAGG
* * * *
19642888 ATCGATAGCACACT-GAGGGGGACCCGA-TCGATCCCTAGCTTGTGCATCCCGCCCCTC-GGGTC
258 ATCGGTAGCACA-TAGAGGGGGACCCGACTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTC
* * * *
19642950 GGCTGAGCGCCCGCACGGTCGTTTCATGAGTTGACTTAGGCATACAGAGTTCTTTCCCAATCTAA
322 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
** * * * * * *
19643015 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATC-GAAGCGAGGGCTACAGCAACACATGCTGG
387 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGAA-CGAGGGTTACGGCAACACAAGCTGG
* * * * * *
19643079 GCTAGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCAAGGCACCATCGTCGGAGCATCGTCAGAG
451 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATC-TCGGAGCATCG-CGGAG
* * *
19643144 AACCTGACC-AGCGGCATTGGGGTTCCAGCGATC------G--GGGTGGTGTGCGCACATGATGT
514 AACCTGACCGA-CGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGT
* * *
19643200 GTGATGGGTGCTGGTACTT-GCCCTTATGTTGGCCCCTATATTGGCCCCTAATCCCTCATCAAAC
578 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG---C--------CCCCTATTCCCTCATCAAAC
* *
19643264 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTA
632 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTA
*
19643329 AAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
697 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
19643394 CTG-ATTTTTTT-TGCGTGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGTGCCAAAAC
762 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAC
* * * **
19643457 TCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATTGTGAAAAATAGAA
827 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
*
19643522 AATGAGTCGTC
892 AACGAGTCGTC
* *
19643533 TTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGGCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
19643598 CATTGGCATGTAGAAATATGAAGATGTGCATAAACCGACCTACCACCCTATCGATCCACGACTTG
66 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
19643663 CGCATCTCGTCTCTCTGGTCGACGTAGTGCCCGCCCTCCCGCCCACCTGCTCGTTTCGTCAGTTG
131 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC-CCTGCCCGCCCGCTCGTTTCGTCAGTTG
* * * * *
19643728 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATC-GAATCGAGGGTTGTGGTAGCAGG
194 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGTAGCAGG
* * *** * * * * * * *
19643792 ATCGGGAGTATGCAGTGAGGGATCCGAC-CGATTCCTCGGCTTGTGCATCCCG-TCCTCTAGGC-
258 ATCGGTAGCACATAGAGGGGGACCCGACTCGA-TCCCCAGCTTGCGCATCCCGCCCCTCT-GGCT
* * * * *
19643854 CGGCCCTGAGTGCCCG-A--ATCGTTTCCGTGGGTTGACTTAGGCATACGGAGTTTCATTCGCAG
321 CGG--CTGAGCGCCCGCACGCTCGTTT-CATGGGTTGACTTAGGCATACAGAG-TTCATTCCCAG
* * * * * *
19643916 TCTAAGTATACGAAGTTCATT-CCAGTCAATAGATCAGACCGGACCGAGGG-TACGACAGCA-AA
382 TCTAAGCATACAAAGTTCATTCCCAGTCTA-AGATCAGACCGGAACGAGGGTTACGGCAACACAA
* * * * * * *
19643978 GCTGGGCTTGATCATGTGCTGGTGGTCGCAATTTTTCTTCGTACGGGGCACCCATCACTGGAGCA
446 GCTGGGCTCGAGCATGTGCTGGT-GCCG-TATTTTTCTTCG-CCAGGGCA-CCATCTC-GGAGCA
* * *** * * * *
19644043 TCGC-GAGAACTTGACCGACGGGCAATTGGGATTTTGACTATCGAGGGGG-CGGCTGGTGTGCGC
506 TCGCGGAGAACCTGACCGAC-GGC-ATTGGGGTTCCAACGATCGGGGGGGCCGG--GGGGTGTGC
*
19644106 ACACCTGATGTGCGATGGGGTGCTGGTAC-TGGCCCTTATATTGGCCCCCTATTCCCTCATCAAA
567 ACACATGATGTGCGAT-GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCCTCATC-AA
19644170 ACCTCGAGAAACTCACA-CCCCTT-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCA
630 ACCTCGAG-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCA
*
19644233 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTT
694 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
19644298 TAG-TCGAATTTTTTTGTGCATGCCAACAGAAAA-AAAAGGATCACGTCTACCAAGTTTGGGCCC
759 TAGCT-GAATTTTTTTGTGCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTGGG-GC
** * * * *
19644361 AAAAA-TCCTTCCGAAAACTTTTTAAAAAATCCCG-ACCGTAAAAAGTTACCAAAATCATTAAAA
821 AAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
19644424 ATAGAAAACGAGTCGTC
886 ATAGAAAACGAGTCGTC
* * * *
19644441 CTGCCATGAAGCTTCATGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
19644506 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
66 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
19644571 TGCATCCTGTCTCTCTGGCCGACGTAGT----G-CCC-GCCCGTCCGCTCGTTTCGTCGGTTGGT
131 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCTGCCCGCCCGCTCGTTTCGTCAGTTGGC
* * *
19644630 TTAGGCATACGGAGTTCATTCCCAATCTAGGATC-GAACCAGACCGAAGGTT
196 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTT
19644681 ATGGCCGGAC
Statistics
Matches: 2560, Mismatches: 309, Indels: 162
0.84 0.10 0.05
Matches are distributed among these distances:
891 1 0.00
892 427 0.17
893 41 0.02
894 3 0.00
895 3 0.00
896 1 0.00
898 1 0.00
899 1 0.00
900 63 0.02
901 16 0.01
902 511 0.20
903 202 0.08
904 663 0.26
905 59 0.02
906 68 0.03
907 143 0.06
908 232 0.09
909 68 0.03
910 9 0.00
914 1 0.00
915 3 0.00
917 20 0.01
918 24 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCTGCCCGCCCGCTCGTTTCGTCAGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATC
GGTAGCACATAGAGGGGGACCCGACTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTCGGCT
GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT
ACAAAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAGGGTTACGGCAACACAAGCTGGGCTCG
AGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATCTCGGAGCATCGCGGAGAACCTGA
CCGACGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTA
AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
Found at i:19643025 original size:26 final size:26
Alignment explanation
Indices: 19642989--19643041 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19642979 GTTGACTTAG
*
19642989 GCATACAGAGTTCTTTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* * *
19643015 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19643041 G
1 G
19643042 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19648280 original size:26 final size:26
Alignment explanation
Indices: 19648246--19648296 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19648236 TGACTTAGGC
*
19648246 ATACGGAGTTCATTCCCAGTCTAAGG
1 ATACAGAGTTCATTCCCAGTCTAAGG
19648272 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
19648297 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGG
Found at i:19649171 original size:26 final size:26
Alignment explanation
Indices: 19649140--19649192 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19649130 GTTGACTTAG
*
19649140 GCATACGGGGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
19649166 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19649192 G
1 G
19649193 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19650067 original size:26 final size:26
Alignment explanation
Indices: 19650031--19650083 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19650021 GTTGAATTAG
*
19650031 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19650057 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19650083 G
1 G
19650084 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19652917 original size:26 final size:26
Alignment explanation
Indices: 19652887--19652939 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19652877 GTTGGCTTAG
*
19652887 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
19652913 GCATACGAAGTTCATTTCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19652939 G
1 G
19652940 ATCGAACGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19653215 original size:288 final size:288
Alignment explanation
Indices: 19652692--19653269 Score: 716
Period size: 288 Copynumber: 2.0 Consensus size: 288
19652682 AGTGCCCGCC
* * *
19652692 CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
1 CGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
* * * ** * * * ** *
19652757 CGGACCGGACCGAGGGTTACGGTAGTAGGATCGGCAGCACGCAGAGGGGGACCCAACCGATCCCC
66 CAGACCGAACAGAGGGTTACGACAGCAAGATCGGCAGCACACAGAAAGGGACCCAACAGATCCCC
* *
19652822 AGCTTGTGCATCCCGCCCCTCTGGCTAGCTAGGCGCCCACACGCTCGTTTCATGGGTTGGCTTAG
131 AGCTTGTGCATCCCGCCCCTCTGGCCAGCTAGGCGCCCACACGCTCGTTTCATGGGTTGACTTAG
* * * *
19652887 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT-TCTAGTCTAAGATCGAACGGGA
196 GCATACGAAGTCCATTCCCAGTCTAAGCATACGAAGTTCATTCTC-ACTCTAAGATCGAACCGGA
*
19652951 CCGAGGGTTGCGGCAGCATATACTGGGCT
260 CCGAGGGTTGCGGCAGCACATACTGGGCT
*
19652980 CGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATGCGAAGTTCATTCCCAGTCTAAGAT
1 CGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
* * * * *
19653045 CAGACCGAACAGCGGGTTGCGACAGCAAGATGGGTAGCACACAGAAAGGGA-CCAGGTCAG-TCC
66 CAGACCGAACAGAGGGTTACGACAGCAAGATCGGCAGCACACAGAAAGGGACCCA--ACAGATCC
* * * * * *
19653108 CCAGCTT-TCGCATCCCGTCCTTCTGGCC-GGTTGAGCGCCCGCACGCTCGTTTTATGGGTTGAC
129 CCAGCTTGT-GCATCCCGCCCCTCTGGCCAGCTAG-GCGCCCACACGCTCGTTTCATGGGTTGAC
* * *
19653171 TTAGGCATACGAAGTCCATTCTCAGTCTAAGCATACGGAGTTCATTCTCACTCTAAGATCGGACC
192 TTAGGCATACGAAGTCCATTCCCAGTCTAAGCATACGAAGTTCATTCTCACTCTAAGATCGAACC
* * * *
19653236 GGACTGAGGGTTGTGGTAGCACATGCTGGGCT
257 GGACCGAGGGTTGCGGCAGCACATACTGGGCT
19653268 CG
1 CG
19653270 TGCATGTGCT
Statistics
Matches: 245, Mismatches: 40, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
287 7 0.03
288 234 0.96
289 4 0.02
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.22
Consensus pattern (288 bp):
CGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
CAGACCGAACAGAGGGTTACGACAGCAAGATCGGCAGCACACAGAAAGGGACCCAACAGATCCCC
AGCTTGTGCATCCCGCCCCTCTGGCCAGCTAGGCGCCCACACGCTCGTTTCATGGGTTGACTTAG
GCATACGAAGTCCATTCCCAGTCTAAGCATACGAAGTTCATTCTCACTCTAAGATCGAACCGGAC
CGAGGGTTGCGGCAGCACATACTGGGCT
Found at i:19653216 original size:26 final size:26
Alignment explanation
Indices: 19653175--19653227 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19653165 GTTGACTTAG
*
19653175 GCATACGAAGTCCATTCTCAGTCTAA
1 GCATACGAAGTCCATTCTCACTCTAA
* *
19653201 GCATACGGAGTTCATTCTCACTCTAA
1 GCATACGAAGTCCATTCTCACTCTAA
19653227 G
1 G
19653228 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTCCATTCTCACTCTAA
Found at i:19654114 original size:26 final size:26
Alignment explanation
Indices: 19654078--19654128 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19654068 GTTGACTTAG
*
19654078 GCATACAGAGTTCATTCCCAGTCTAC
1 GCATACAGAGTTCATTCCCAATCTAC
19654104 GCATACAGAGTTCATTCCCAATCTA
1 GCATACAGAGTTCATTCCCAATCTA
19654129 AGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAC
Found at i:19654716 original size:891 final size:892
Alignment explanation
Indices: 19652982--19657772 Score: 5730
Period size: 903 Copynumber: 5.3 Consensus size: 892
19652972 ACTGGGCTCG
* * * * *
19652982 CCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATGCGAAGTTCATTCCCAGTCTAAGATCA
1 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * ** ** * * *
19653047 GACC-GAACAGCGGGTTGCGACAGCAAGATGGGTAGCACACAGAAAGGGACCAGGTC-AGTCCCC
66 GACCGGATC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGA-TCCTC
* * * * * * **
19653110 AGCTT-TCGCATCCCGTCCTTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTTATGGGTTGACTTA
129 GGCTTGT-GCATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * *
19653174 GGCATAC-GAAGTCCATTCTCAGTCTAAGCATACGGAGTTCATTCTCACTCTAAGATCGGACCGG
193 GGCATACAGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGG
* * * *
19653238 ACTGAGGGTTGTGGTAGCACATGCTGGGCTCGTGCATGTGCTGGTGCCGTATTTTTCTTC-CCTG
258 ACTGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTC-G
* * * * *
19653302 AGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGACATTAGGGTTCCGACGATCGGGG
322 AGGCACCAT-GT--G-G-A-C--CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-AGG
*
19653367 GGGCCGGGGGGTGTGCGCACAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
378 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCC
* *
19653432 TATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGC
442 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGC
* *
19653497 TGCCAGTAGCCATTAAAGCGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
507 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * *
19653562 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAGTACAAGGATCATGTCTACGAA
572 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAT
* * * * *
19653627 GTTTGGGGACAAAAGGT-TTTCCAAAAAAATTTTAAAAAATCCCGAACCT-TAAAAAGTTTCAAA
637 GTTTGGGGCCAAAA-CTCCTTCCGAAAAAATTTTAAAAAATCCCGAA-CTGCAAAAAGTTTCAAA
* * *
19653690 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCAT
700 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCAT
* *
19653755 TGTATGAATTTAGAAGACATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACTC
765 TGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
19653820 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
830 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC
* * ** *
19653884 ACCCACCCGCCCGTTCGTTTCGTCGGTCAGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC
1 -CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
19653949 GAACCAGACCGAGGCTTACGGCAGCAGGATCGGCAGCACGTAGAAGGGGACCCGGTCGATCCTCG
65 GGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCTCG
* ** * * * * *
19654014 ACTTGCACATCATGCCCCTATGGCTAGCTGAGCGCCCGCACACTTGTTTCGTGGGTTGACTTAGG
130 GCTTGTGCATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
19654079 CATACAG-AGTTCATTCCCAGTCTACGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGAC
195 CATACAGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGAC
* * * * * *
19654143 CGAGGGTTACGGTAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGAGG
260 TGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGG
* * **
19654208 CACCAT-T-G-CCGGAGAACCTGACCGACGGTATAGGGGTTCCGATGATCAGGGGGCCGGGGGGT
325 CACCATGTGGACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGCCGGGGGGT
* *
19654270 GTGCGCACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCTCCTATCTCTCATCA
390 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCA
* *
19654335 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAAGTTTGCTGCCA-TAAGCT
454 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGT-AGCC
* * * *
19654399 ATTAAAGTGTCTGAAAAGGGGACATTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTC
518 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
19654464 TTAGCT-AAGTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCC
583 TTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCC
19654528 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAA
647 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAA
* *
19654593 TAGAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTATATGAATTTA
712 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTA
* * * *
19654658 CAAGGCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTGAACCCACCTACCACCCT
777 GAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * * ** *
19654723 ATCGATCCATGGCTTGCGAATCCCATTTGTTTGGCAAGCGTAGTGCCTG--
842 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * * *
19654772 CCCGCCCGCCCGCTCGTTTCGTCAGTTGGTTTAGGCATATGGAGTTCATTCCCAGTCTTAGATCG
1 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * ** *
19654837 GACCGGATTGAGGGTTGTGGTAGCAAGATCGGCAGCACGTAGAGAGGGACCCGGCCGATCCTTGG
66 GACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCTCGG
* *
19654902 CTTGTGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTAGACTTAGGC
131 CTTGTGCATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
*
19654967 ATACAAAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCAAGTCTAAGCATACGAAGTTCAT
196 ATAC--AG---A-----AGT-T---C------A-TTC---CC-AGTCTAAGCATACGGAGTTCAT
* * * * * *
19655032 TCCCAATCTAAGATCGGATCAGACTGACGATTGCGGCAGCACACGCTGGGCTCGGGCATGTGCTG
236 TCCCAATCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTG
* * * * *
19655097 GTGCCGTATTTTTCTTCTTCGGGGCACCATTGCCGGAGCATCATCGGAGAACTTGACCGACGACA
301 GTGCCGTATTTTTCTTCGTCGAGGCACCA-TG--TG-G-A-C--CGGAGAACCTGACCGACGGCA
* * *
19655162 TTGGGGTTCCGGCGATC-GGGAAGGCCAGGGGGTGTGCACAGATGATGTGCGATGGGTGCTGGTA
358 TTGGGGTTCCGGCGATCAGGG--GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
19655226 CTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
421 CTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
19655291 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTATTTTC
485 ATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
19655356 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAA
550 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* ** *
19655421 ATACAAGGATCACGTCTACCATGTTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAATCCT
615 ATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* *
19655486 GAACTGCAAAAAGTATT-GAAAATCATGAAAAATAGAAAACGAGGCAG-CTTGCCATGAAACTTC
680 GAACTGCAAAAAGT-TTCAAAAATCATGAAAAATAGAAAACGAGTC-GTCTTGCCATGAAACTTC
*
19655549 ACGTGAAAGCTTAAGGGAA-CATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGA
743 ACGTGAAGGCTTAA-GGAACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGA
*
19655613 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGTTTGCGCATCCCGTCTCT
807 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * *
19655678 CTGGCCGACGTATTGCCCTCC
872 CTGGCCGGCGTAGTGCCCGCC
* * * * *
19655699 CGCTCGTCTGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGGT
1 C-C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * ** * * * *
19655764 TGAACTGGATCGAGGGTTGCGATAGTAGGATCGGCAGCATGCAGAGGGGGACCTGATCGAT-CTC
64 CGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCTC
* ** * *
19655828 TGGCTTATGCATCCTGCCCCTCTGGCTGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTA
129 -GGCTTGTGCATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
** * *
19655893 GG-A-ACACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCATAGTCTAAGATCGGACCA
193 GGCATACA-GAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCG
* * * * **
19655956 GACCGAGGGTCGCGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGTCACATTTTTCTTCGTCG
257 GACTGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCG
* * * * *
19656021 AGGCACCATCGTCGGAGCATCACCGAAGAACCTGACTGCCGGTATTGGGGTTCCGGCGATCAAGG
322 AGGCACCAT-GT--G-G----ACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGG
* * *
19656086 GGCCGGGGGGTGTGCGCACATGATGTACGATAGGTGCTGGTACTTGGCCCTTATCTTGGTCCCCT
379 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCT
19656151 ATCCCTCATCAAACCTCGAGAACTCACACCCCCCTTAAAGAGCATTTGAGATTTTAC-AGATTTG
443 ATCCCTCATCAAACCTCGAGAACTCACA-CCCCCTTAAAGAGCATTTGAGATTTTACAAG-TTTG
* *
19656215 CTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTATCAAATGGTCACAAAATCTTGTA
506 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * *
19656280 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGGCAAAAAAAATACAAGGATCCCGTCTACCT
571 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * *
19656345 TGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
636 TGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAA
* * *
19656410 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGGAGGCTTAA-GAGACCAT
701 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGA-ACCAT
* * * *
19656474 TATATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
765 TGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * * * *
19656539 ACCTACCACCTTATCGAT-CACGGCTTGCGCATCCTGTCTCTTTGGTCGACGTAGAGCCCG--
830 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * * ** * * *
19656599 CCCGCCCGTCCGCTCATTTCGTCAGTTGGCTTAGGCATTTGGAGTTCCTTCCAAGTCTTAGATCG
1 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * *
19656664 GATCGGATCGAGGGTTGTGGCAGCAAGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCTCGG
66 GACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCTCGG
* * *
19656729 CTTGTGCAT-CTCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTAGACTTAGG
131 CTTGTGCATCCT-GCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T---
* *
19656793 CATATGAAGTTCATTACCAGTCTAAGCATACGGAGTTCATTGCAAGTCTAAGCATACGGAGTTCA
191 --TA-G--G--CA-T---A--C--AG---A---AGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * *
19656858 TTCCCGATCTAAGATCGGATCGGACTGACGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCT
235 TTCCCAATCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCT
* * *
19656923 GGTGCCGTATTTTTCTTCGTTGGGGCACCAATGTCGAATCATCACCGGAGAACCTGACCGACGGC
300 GGTGCCGTATTTTTCTTCGTCGAGGCACC-ATGT-G------GACCGGAGAACCTGACCGACGGC
* * * * *
19656988 ATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGGTGTGCACAGATGATGTGCGATGGGTGCTAGTA
357 ATTGGGGTTCCGGCGATCAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
19657053 CTTGGCCCTTA-ATTGGCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAAGC
421 CTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG-AGC
*
19657117 ATTTGAGA-TTTAC-AGTTTGCTGCCAGTAGCCATTAAAGGGTCTGAAATGGGGACACTTTTTTC
485 ATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* ** * *
19657180 AATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAAAATTTTTTTGTGCACGCCAAAAAAA
550 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
19657245 ATACAAGGATCAGGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCT
615 ATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * * * *
19657310 GAACTGCAAAAAGTATCGAAATTCATGAAAAATAAAAAAAACGAGTCAG-CTTGCCATCAAACTT
680 GAACTGCAAAAAGTTTCAAAAATCATGAAAAAT--AGAAAACGAGTC-GTCTTGCCATGAAACTT
*
19657374 CACGTGAAGGCTTAAGGGAA-CATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAA
742 CACGTGAAGGCTTAA-GGAACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAG
*
19657438 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCACGTCTC
806 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
*
19657503 TCTGGCCGGCGTATTGCCCGCTC
871 TCTGGCCGGCGTAGTGCCCGC-C
* * *
19657526 ACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCTTACGGAGTTCATTCCCAATCTAAGATT
1 -CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
19657591 GGACCGGATTGAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCTGACCGAT-CTCC
65 GGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCT-C
** * * *
19657655 AACTTGCGCATCCCGCCCCTCTGGCC-GACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTA
129 GGCTTGTGCATCCTGCCCCTCTGGCCAG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * * *
19657719 GGCACAC-GGAGTTCATTCACAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
193 GGCATACAGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAG
19657773 NNNNNNNNNN
Statistics
Matches: 3335, Mismatches: 428, Indels: 251
0.83 0.11 0.06
Matches are distributed among these distances:
887 167 0.05
889 2 0.00
890 8 0.00
891 461 0.14
892 32 0.01
894 1 0.00
897 3 0.00
898 154 0.05
899 6 0.00
900 1 0.00
901 3 0.00
902 163 0.05
903 741 0.22
904 12 0.00
905 2 0.00
906 2 0.00
907 4 0.00
908 3 0.00
909 3 0.00
910 1 0.00
911 1 0.00
912 2 0.00
913 102 0.03
914 2 0.00
915 1 0.00
917 4 0.00
918 4 0.00
919 3 0.00
921 193 0.06
922 21 0.01
923 166 0.05
924 227 0.07
925 503 0.15
926 11 0.00
927 7 0.00
928 160 0.05
929 159 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
GACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCTCGG
CTTGTGCATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
ATACAGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACT
GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGC
ACCATGTGGACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGCCGGGGGGTG
TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAA
CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAA
CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGA
AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTAGAAG
CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
Found at i:19655002 original size:26 final size:26
Alignment explanation
Indices: 19654972--19655043 Score: 108
Period size: 26 Copynumber: 2.8 Consensus size: 26
19654962 TAGGCATACA
19654972 AAGTTCATTCCCAGTCTAAGCATAAG
1 AAGTTCATTCCCAGTCTAAGCATAAG
* * *
19654998 GAGTTCATTCCAAGTCTAAGCATACG
1 AAGTTCATTCCCAGTCTAAGCATAAG
*
19655024 AAGTTCATTCCCAATCTAAG
1 AAGTTCATTCCCAGTCTAAG
19655044 ATCGGATCAG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (26 bp):
AAGTTCATTCCCAGTCTAAGCATAAG
Found at i:19656829 original size:26 final size:26
Alignment explanation
Indices: 19656800--19656859 Score: 102
Period size: 26 Copynumber: 2.3 Consensus size: 26
19656790 AGGCATATGA
*
19656800 AGTTCATTACCAGTCTAAGCATACGG
1 AGTTCATTACAAGTCTAAGCATACGG
*
19656826 AGTTCATTGCAAGTCTAAGCATACGG
1 AGTTCATTACAAGTCTAAGCATACGG
19656852 AGTTCATT
1 AGTTCATT
19656860 CCCGATCTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
AGTTCATTACAAGTCTAAGCATACGG
Found at i:19656868 original size:26 final size:25
Alignment explanation
Indices: 19656800--19656870 Score: 97
Period size: 26 Copynumber: 2.7 Consensus size: 25
19656790 AGGCATATGA
19656800 AGTTCATTACCAGTCTAAGCATACGG
1 AGTTCATT-CCAGTCTAAGCATACGG
*
19656826 AGTTCATTGCAAGTCTAAGCATACGG
1 AGTTCATT-CCAGTCTAAGCATACGG
*
19656852 AGTTCATTCCCGATCTAAG
1 AGTTCATTCCAG-TCTAAG
19656871 ATCGGATCGG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 2 0.05
26 38 0.95
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (25 bp):
AGTTCATTCCAGTCTAAGCATACGG
Found at i:19659840 original size:529 final size:528
Alignment explanation
Indices: 19658803--19659862 Score: 1633
Period size: 529 Copynumber: 2.0 Consensus size: 528
19658793 GTCGGAGAAC
* ***
19658803 CTGACCGACGGCATTGGGTTCTGCCATCGGAGGGGCCGAGGGGGTGTGCGTGCATGATGTGCAAT
1 CTGACCGACGGCATTGGGTTCGGCCATCGGAGGGGCCGAGGGGGTGTGCACACATGATGTGCAAT
* * * ** *
19658868 GGGTGCTTTTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAATCCTTGAGAAGTCACACCC
66 GGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
* **
19658933 ACTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
131 ACTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCCAAAATGGGG
*
19658998 ACACCTTTTTCGAATGGCCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTGTGCA
196 ACACCTTTTTCAAATGGCCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTGTGCA
* ** *
19659063 TGCCAACAAAAATACAAGGATCATGTCTACAATGTTTGGGGACAAAAATGTTTTTGAAAAAATTT
261 TGCCAACAAAAATACAAGGATCACGTCTACAATGTTTGGGGACAAAAATCCTTTCGAAAAAATTT
* *
19659128 CAAAAAATCTCAAATCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
326 CAAAAAATCTCAAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
19659193 TGAAACTTCATGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGG
391 TGAAACTTCATGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGG
* *
19659258 CATGTAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
456 CATGCAGAAATATGAAGATGTGACTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCATC
*
19659323 TCGTCTCT
521 CCGTCTCT
* * *
19659331 CTGACCGACGGTATTGGGGTTCCGGCGATC-GAGGGGGCCG-GGGGGTGTGCACACATGATGTGT
1 CTGACCGACGGCATT-GGGTT-CGGCCATCGGA-GGGGCCGAGGGGGTGTGCACACATGATGTGC
*
19659394 GATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
63 AATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * *
19659459 CCCACTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCGGTAGCCAGTAAAGTGTCCAAAATG
128 CCCACTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCCAAAATG
* * *
19659524 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGT
193 GGGACACCTTTTTCAAATGGCCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTGT
*
19659589 GCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGACAAAACA-CCTTTCGAAAAA
258 GCATGCCAACAAAAATACAAGGATCACGTCTACAATGTTTGGGGACAAAA-ATCCTTTCGAAAAA
* * * *
19659653 AGTTT-AAAAAATCTCGAACCGTAAAAAGTTTTGGAAATCATGAAAAATAGAAAACGATTCGTCT
322 A-TTTCAAAAAATCTCAAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * * **
19659717 TGCCATGAAACTTTATGTGAAGGCTTAGGGGACCATTTTATGAATTTACAAGCCATTAAAATGGC
386 TGCCATGAAACTTCATGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGC
* *
19659782 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGG
451 ATTGGCATGCAGAAATATGAAGATGTGACTAAACACACCTACCACCCTATCGATCCACGGCTTGC
19659847 GCATCCCGTCTCT
516 GCATCCCGTCTCT
19659860 CTG
1 CTG
19659863 GCCAACATAG
Statistics
Matches: 481, Mismatches: 46, Indels: 9
0.90 0.09 0.02
Matches are distributed among these distances:
528 14 0.03
529 450 0.94
530 17 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (528 bp):
CTGACCGACGGCATTGGGTTCGGCCATCGGAGGGGCCGAGGGGGTGTGCACACATGATGTGCAAT
GGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
ACTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCCAAAATGGGG
ACACCTTTTTCAAATGGCCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACAATGTTTGGGGACAAAAATCCTTTCGAAAAAATTT
CAAAAAATCTCAAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCATGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGACTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCT
Found at i:19660934 original size:714 final size:714
Alignment explanation
Indices: 19659343--19662094 Score: 4022
Period size: 714 Copynumber: 3.8 Consensus size: 714
19659333 GACCGACGGT
* * * * *
19659343 ATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTTGTA
1 ATTGGGGTTCCGGCGATCGAGGGGGCCAGGGGGTGTGCGCACATGATGAGCGATGGGTGCTAGTA
* * *
19659408 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCACTTAAAGAGC
66 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACCCCCTTAAAGAGC
* * * **
19659473 ATTTGAGATTTTATAGGTTTGCTGCCGGTAGCCAGTAAAGTGTCCAAAATGGGGACACTTTTTTC
131 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
19659538 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAA
196 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
19659603 ATACAAGGATCACGTCTACCATGTTTGGGGACAAAACA-CCTTTCGAAAAAAGTTTAAAAAATCT
261 ATACAAGGATCACATCTACCAAGTTTGGGGACAAAA-ATCCTTCCGAAAAAATTTTAAAAAATCT
*** * * *
19659667 CGAACCGTAAAAAGTTTTGGAAATCATGAAAAATAGAAAACGATTCGTCTTGCCATGAAACTTTA
325 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
* * * *
19659732 TGTGAAGGCTTAGGGGACCATTTTATGAATTTACAAGCCATTAAAATGGCATTGGCATGCAGAAA
390 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* **
19659797 TATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGGGCATCCCGTCTCTCT
455 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCT
19659862 GGCCA-ACATAGTGCCCGCCCGCCCTCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
520 GG-CAGACATAGTGCCC-CCCG--CTC-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* *
19659926 GTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCAGGCAT
580 GTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCAGGCAT
* *
19659991 GTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCATCACCGGAGCATCACCGGAGAATCTGACCA
645 GTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATCACCGGAGAATCTGACCG
19660056 GCGAC
710 GCGAC
* * *
19660061 ATTGGGGTTCTGGCGATCGAGGGGGTCAGGGGGTGTGCGCAGATGATGAGCGATGGGTGCTAGTA
1 ATTGGGGTTCCGGCGATCGAGGGGGCCAGGGGGTGTGCGCACATGATGAGCGATGGGTGCTAGTA
*
19660126 CTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACCCCCTTAAAGAGC
66 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACCCCCTTAAAGAGC
19660191 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
131 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * * *
19660256 AAATGGTCACAAAATCTTGTACACTTCGAGTTATTAGTTGATTTTTTTTGTGCTTGCCAAAAAAA
196 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
19660321 ATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTTAAAAATC-C
261 ATACAAGGATCACATCTACCAAGTTTGGGGACAAAAATCCTTCCGAAAAAATTTTAAAAAATCTC
* * *
19660385 TGAACCGTAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
326 -GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
*
19660450 CGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
390 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
** *
19660515 TATGAAGAAATCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCT
455 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCT
* * *
19660580 GGCAGGCATAGTGCCCGCCCG-TCCGCCCTCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTC
520 GGCAGACATAGTGCCC-CCCGCTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
*
19660644 ATTCCCAATCTAAGATCGGACCGGACCGAGGGTTATGACAGCACATGCTGGGCTCAGGCATGTGC
584 ATTCCCAATCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGC
19660709 TGGTGCCACATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATCACCGGAGAATCTGACCGGCGA
649 TGGTGCCACATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATCACCGGAGAATCTGACCGGCGA
19660774 C
714 C
* * *
19660775 ATTGGGGTTCTGGCGATCGAGGGGGTCAGGGGGTGTGCGCAGATGATGAGCGATGGGTGCTAGTA
1 ATTGGGGTTCCGGCGATCGAGGGGGCCAGGGGGTGTGCGCACATGATGAGCGATGGGTGCTAGTA
*
19660840 CTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACCCCCTTAAAGAGC
66 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACCCCCTTAAAGAGC
* * *
19660905 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGCCACTTTTTTG
131 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
19660970 AAATGGTCACAAAAACTTATACAGTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAA
196 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * * * * ** *
19661035 ATAAAAGGATAAAATCTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAAAATTAAAAAATCCC
261 ATACAAGGATCACATCTACCAAGTTTGGGGACAAAAATCCTTCCGAAAAAATTTTAAAAAATCTC
* * *
19661100 GAACCGTGAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCCTGCCATGAAACTTCAT
326 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAC
19661165 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
391 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * *
19661230 AT-AGAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTGCGCATCCCGTCTCTTT
456 ATGA-AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCT
* * * *
19661294 GGCTGGA-GTAGTGCCACCCCGCTCAGCCGGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
520 GGC-AGACATAGTGCC-CCCCGCT---CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * *
19661358 GTTCATTCCCACTCTAACATTGGACCAGACCGAGGGTTACGACAGCACGTGCTGGGCTC-GAGCA
580 GTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCAG-GCA
* * * * * * *
19661422 TGTGCTGGTGCAACATTTTTC-TTCCTCGGGGTACCATCGTCGGAGCATCGCCAGAGAA-CTTTA
644 TGTGCTGGTGCCACATTTTTCTTTGC-CGGGGCACCATCGCCGGAGCATCACCGGAGAATC-TGA
*
19661485 CCGG-TAGC
707 CCGGCGA-C
* * * * *
19661493 ATTAGGGTTCCGACGATCG-GGGGGCCGAGGGTGGTGTGTGCACATGATGTGCGATGGGTGCTGG
1 ATTGGGGTTCCGGCGATCGAGGGGGCC-AGGG-GGTGTGCGCACATGATGAGCGATGGGTGCTAG
* *
19661557 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAGACCTCGAGAACTCACACCCCCTTAAAGA
64 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACCCCCTTAAAGA
19661622 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
129 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
19661687 TCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTGTTTGTGCATGCCAACAA
194 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
*
19661752 AAATACAAGGATCACATCTACCAAGTTTGGGGACAAAACTCCTTCCGAAAAAATTTTAAAAAATC
259 AAATACAAGGATCACATCTACCAAGTTTGGGGACAAAAATCCTTCCGAAAAAATTTTAAAAAATC
* ** ** *
19661817 TCGAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTC
324 TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
* *
19661882 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTGGCATGTAGAA
389 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* **
19661947 ATAGGAAGATGTGCCTAAACCCACCTACCACTTTATCGATCCACGGCTTACGCATCCCGTCTCTC
454 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTC
* * * ** * *
19662012 TAGCCGACGTAGTG---CCTAC-CCGCCCGCTCGTTTCGTCGATTGGGTTAGGCATACGGAGTTC
519 TGGCAGACATAGTGCCCCCCGCTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* *
19662073 ATTCCCAGTCTAAGATCAGACC
584 ATTCCCAATCTAAGATCGGACC
19662095 AAACTGAGGG
Statistics
Matches: 1849, Mismatches: 166, Indels: 45
0.90 0.08 0.02
Matches are distributed among these distances:
711 56 0.03
713 1 0.00
714 659 0.36
715 9 0.00
717 16 0.01
718 655 0.35
719 452 0.24
720 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (714 bp):
ATTGGGGTTCCGGCGATCGAGGGGGCCAGGGGGTGTGCGCACATGATGAGCGATGGGTGCTAGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACATCTACCAAGTTTGGGGACAAAAATCCTTCCGAAAAAATTTTAAAAAATCTC
GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTG
GCAGACATAGTGCCCCCCGCTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAATCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGCTG
GTGCCACATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATCACCGGAGAATCTGACCGGCGAC
Found at i:19663132 original size:26 final size:26
Alignment explanation
Indices: 19663095--19663147 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19663085 GTTGACTTAG
*
19663095 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19663121 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19663147 G
1 G
19663148 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19663989 original size:902 final size:896
Alignment explanation
Indices: 19662219--19664765 Score: 3571
Period size: 902 Copynumber: 2.8 Consensus size: 896
19662209 GTTGACTTAC
* * *
19662219 GCATAC-AGAGTTCACTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTTG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGG
* * * * * * * *
19662283 GCTCGGGCATGTGCTGTTGCCGTATTTTTCATCACTGGGGCACCATCGTCGGAGCGTCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGTCGGAG
* * *
19662348 AACCTGACCGACGACATTGGGGTTCCGGC-AGTCGGGGGGGCCGGGGG-GTTGCTCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTTCGGCGA-TC-GGGGGGCCGGGGGTG-TGCACACATGATGT
* * * *
19662411 GCGATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCTTATCCCTCGTCAAGCCTTGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCA
* * * * *
19662476 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCACGTTGGCATGAAAGTGTCTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCA-GTAGCCATTAAAGTGTCTAAAA
** * *
19662541 TGGAAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTT
320 TGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTT
* * *
19662606 GTGTATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAAATCCTTCCGAAAA
384 GTGCAT-CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
* * * **
19662671 AATTTTAAAAAATCCTGAACCG-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTC
448 AATTTTAAAAAATCC-GAACCGCAAAAAAG-ATCAAAAATCGTGAAAAATAAAAAATGAGTCGTC
* *
19662735 TTGCCGTGAAACTTCACGTGACGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
511 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19662800 CATTGG-AACACAGAAATATGAAGATGTGCCTAAACCCACCAAACACCCTATCGATCCATGGCTT
576 CATTGGCAA-GCAGAAATATGAAGATGTGCCTAAACCCACCTAACACCCTATCGATCCACGGCTT
* * *
19662864 GCGCATTCCGTCTCTTTGGTCGGCGTAGTGCCCGCTCGCCTGCCCGCCCGCTCGTTTCATCGGTT
640 GCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCG-CTGCCCGCCCGCTCGTTTCATCGGTT
* *
19662929 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAAGGTTACGACAGCAG
704 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCAGACCGAAGGTTACAACAGCAG
* * *
19662993 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTAGCTTGCGCATCCCACCCCTCTGGCCGA
769 GATCGGCAGCACGCAGAGAGGGACCCGACCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCAGA
* *
19663058 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 CTGAGCGCCCGCACACTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
19663121 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * * *
19663186 CTCGGGCACGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCGCCATCATCGAAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGTCGGAGA
* * * * *
19663251 ACCTTACTGACGGCATTGGGGTTTCGACGATCGAGGGGGCCGGGGGTGTGCGCACATGATGTGTG
131 ACCTGACCGACGGCATTGGGGTTTCGGCGATCG-GGGGGCCGGGGGTGTGCACACATGATGTGCG
*
19663316 ATGGGTGCTTGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACAC
19663381 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTG-CAGTAGCCATTAAAGTGTCTAAAATGG
19663446 GGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGC
323 GGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGC
* * *
19663511 ATACCAA-AAAAACTACAAGGATCATGTCTACCATGTTTGGGGCCAAAATTCCTTCCAAAAAAAT
388 AT-CCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAAT
* *
19663575 TTTAAAAAATCTCGAACCGCAAAAAAGATCCAAAATCGTGAAAAATAAAAAATGAGTCATCTTGC
451 TTTAAAAAATC-CGAACCGCAAAAAAGATCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGC
19663640 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
515 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
19663705 GGCAAGCAGAAATATGGAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCA
580 GGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTAACACCCTATCGATCCACGGCTTGCGCA
* * * * * *
19663770 TCCCGTTTCTTTGGCCGACGTAGTACCCGCCCGCTTGCCCGCCCATCTCGTTTCGTCGGTTGGAT
645 TCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGC-TGCCCGCCC-GCTCGTTTCATCGGTTGGCT
* * ** *
19663835 GAGGCATACGGAGTTCATTCCTAGTCTAAGATCGA-ACCAGATTG-AGGATTGCAACAGCAGGAT
708 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCAGACCGAAGG-TTACAACAGCAGGAT
* * * * * ** *
19663898 TGGTAGCACGTAGAGAGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCAGACTG
772 CGGCAGCACGCAGAGAGGGACCCGACCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCAGACTG
* * * * *
19663963 AGCGCCCGTACACTCTTTTTGTGGGTTAACTTATGCATACGGAGTTCATTCTCAGTCTAA
837 AGCGCCCGCACACTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19664023 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * * * *
19664087 CTCGAGCATTTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGTCGGAGA
* *
19664152 ACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGTCGGGGGGGTGTGCACACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGG-C-CGGGGGTGTGCACACATGATGTGC
* * *
19664217 GATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCCAATCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19664282 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGTCGGTAGCTATTAAAGTGTCTGAAAA-
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTG-CAGTAGCCATTAAAGTGTCT-AAAAT
* *
19664346 GGGGACA-CTCTTTTCAAATGGTCACAAAATCTTCTACACGTCGAGTTTTTAGCTGAATTTTTTT
321 GGGGACACCT-TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
19664410 GTGCATCCGAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
384 GTGCATCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
* * *
19664475 AA-TTTACAAAAATCCCGAACCGCAAAAAGGATAAAAAATCGTGAAAAATAAAAAATGAATCGTC
448 AATTTTA-AAAAAT-CCGAACCGCAAAAAAGATCAAAAATCGTGAAAAATAAAAAATGAGTCGTC
* *
19664539 TTGGCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
511 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * ** *
19664604 CATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATTTATCCAGGGCTT-
576 CATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTAACACCCTATCGATCCACGGCTTG
* * * *
19664668 CGCATCCCATCTCTCTGTCCGGCGAAGTGCCCG-CC-C-GCCCGCCCGCTCGTTTCATCGGTTGG
641 CGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCTGCCCGCCCGCTCGTTTCATCGGTTGG
19664730 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
706 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
19664766 GATAGGATCG
Statistics
Matches: 1469, Mismatches: 153, Indels: 51
0.88 0.09 0.03
Matches are distributed among these distances:
897 49 0.03
898 8 0.01
900 12 0.01
901 402 0.27
902 747 0.51
903 245 0.17
904 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGCCGGGGGTGTGCACACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCAGTAGCCATTAAAGTGTCTAAAATGGGGA
CACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAA
AAAATCCGAACCGCAAAAAAGATCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAG
CAGAAATATGAAGATGTGCCTAAACCCACCTAACACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTTTGGCCGGCGTAGTGCCCGCCCGCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCGAGACCAGACCGAAGGTTACAACAGCAGGATCGGCAGCAC
GCAGAGAGGGACCCGACCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCAGACTGAGCGCCCGC
ACACTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19664033 original size:26 final size:25
Alignment explanation
Indices: 19663997--19664048 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
19663987 GTTAACTTAT
19663997 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTC-CAGTCTAA
19664023 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
19664048 G
1 G
19664049 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 9 0.35
26 17 0.65
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:19666118 original size:718 final size:712
Alignment explanation
Indices: 19664023--19666220 Score: 3123
Period size: 712 Copynumber: 3.1 Consensus size: 712
19664013 CTCAGTCTAA
* *
19664023 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCA-GATCGAGGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
19664086 GCTCGAGCATTTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCC-GAGCATCGTCGGAG
* *
19664151 AACCTGACCGGCGGCATTGGGGTT-TCGGCGATCGGGGGGTCGGGGGGGTGTGCACACATGATGT
129 AACCTGA-CAGCGGCATTGGGGTTCT-GGCGATCGGGGGG-CCGGGGGGTGTGCACACATGATGT
* * *
19664215 GCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCCAATCTCGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
19664280 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGTCGGTAGCTATTAAAGTGTCTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
19664345 AGGGGACACTCTTTTCAAATGGTCACAAAATCTTCTACACGTCGAGTTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
19664410 GTGCAT-CCGAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAAATCCTTCC-AA
386 GTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGGCCAAAAATCCTTCCGAA
* * ** * * * *
19664472 AAAAATTTACAAAAATCCCGAACCGCAAAAAGGATAAAAAATCGTGAAAAATAAAAAATGAATCG
450 AAAATTTTA-AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCG
* *
19664537 TCTTGGCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** *
19664602 GGCATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATTTATCCAGGGCT
579 GGCATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
19664667 T-CGCATCCCATCTCTCTGTCCGGCG-AAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGG
644 TGCGCATCCCGTCTCTCTGGCCGGCGTAA-TGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGG
19664730 CTTAG
708 CTTAG
* * *
19664735 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATAGGATCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19664800 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCACTGGGGCACCATCGTCGAAG-ATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCG-AGCATCGTCGGAGA
* ***
19664864 GCCTGACAGGCGGCATTGGGGTTCCAACGATCGGTGGGGCCGGGGGGTGTGCACACATGATGTGC
130 ACCTGACA-GCGGCATTGGGGTTCTGGCGATCGG-GGGGCCGGGGGGTGTGCACACATGATGTGC
19664929 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
19664994 CCCCCTTAAAGAGCATTTGAGATTTTACAGTTTTGCTGCCTGTAGACATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
19665059 GGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTGTTTAGCTGAATGTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
19665124 GCAAGCCAAAAAAAATACAAGGATTACGTCTACCATG-TTTGGGGCCAAAAATCCTTCCGAAAAA
388 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGGCCAAAAATCCTTCCGAAAAA
* * *
19665188 ATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
* *
19665253 GCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
19665318 TTGGCATGCAGAAATATGAAGATGTTCCTAAACCCA-CTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
19665382 CATCCCGTCTCTCTGGCCGACGTAATGCCCGTCCGCCCGCCCGCCCGTTCATTTCGTCGGTTGGC
648 CATCCCGTCTCTCTGGCCGGCGTAATG--C--CCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGC
19665447 TTAG
709 TTAG
* * *
19665451 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * *
19665516 CTCGGGCATGTGCTGGAGCCGTATTTTTCTTCGCCAGGGCACCATTGCCAGAGCATTGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCC-GAGCATCGTCGGAGA
* * * * *
19665581 ACCTGATCAGTGGCATTGGGGTTCTGGCTATCGGGGGGCCAGGGGGATGTGCGCACTTGATGTGC
130 ACCTGA-CAGCGGCATTGGGGTTCTGGCGATCGGGGGGCC-GGGGGGTGTGCACACATGATGTGC
* * *
19665646 GATTGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA-TGCAC
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT-CAC
* * *
19665710 ACCCCCTTAAAGAGCATTTGAAATTTTATAGGTTTGCTG-CAGTAGCCATTAAAGCGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
19665774 TGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTTTTTTT
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
**
19665839 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTATTTTTGGCCAAAAATCCTTCCGAAA
387 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT-TTTGGGGCCAAAAATCCTTCCGAAA
*
19665904 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGAC
451 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTC
* * * *
19665969 TTGCCATGAAACTTCACGTGAAGGCTGAACGGACCATTGTATGAATTTACAAGTCATAAAAAT-T
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*** *
19666033 CTATTGGCATGCAGAAATATGAAGATGTGAGTAAACCCACCTACGA-CCTATCGATCCACGGCTT
581 C-ATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
19666097 GCGCATCCTGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCCC-TCTCGTTTCGTCGGTTGCC
645 GCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCCCGT-TCGTTTCGTCGGTTGGC
19666161 TTAG
709 TTAG
* * * * *
19666165 GCGTACAGAGTTCATTCCCAGTCTAAGATCGAACAGGACTGAGGGTTACGGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCA
19666221 GGATCAGCGG
Statistics
Matches: 1329, Mismatches: 133, Indels: 46
0.88 0.09 0.03
Matches are distributed among these distances:
711 23 0.02
712 478 0.36
713 105 0.08
714 83 0.06
716 258 0.19
717 153 0.12
718 224 0.17
719 5 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (712 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGAGCATCGTCGGAGAA
CCTGACAGCGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGGCCAAAAATCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAG
Found at i:19666375 original size:26 final size:26
Alignment explanation
Indices: 19666323--19666375 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19666313 GTTGACTTAG
*
19666323 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
19666349 GCATACGGAGTTTATTCCCAATTTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19666375 G
1 G
19666376 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19667965 original size:26 final size:26
Alignment explanation
Indices: 19667935--19667987 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19667925 GTTGACTTAC
19667935 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
19667961 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19667987 G
1 G
19667988 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19668870 original size:26 final size:26
Alignment explanation
Indices: 19668834--19668886 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19668824 GTTGACTTAC
19668834 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19668860 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19668886 G
1 G
19668887 ACCGACGGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19670880 original size:894 final size:896
Alignment explanation
Indices: 19668886--19685244 Score: 9009
Period size: 892 Copynumber: 17.8 Consensus size: 896
19668876 CTCAGTCTAA
* * * *
19668886 GACCGACGGCATTAGGGTTTCGACGATCGGGGGGGCC--TGGGGTGTGCGCACAGGATGTGCGAT
1 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* ** *
19668949 GGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCGCCAAACCTCGAGAACTCATACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
19669014 CCTTAAAGAGCGTTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
19669079 ACACTTTTTTTAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTATGC
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGC
* * *
19669144 ATGCCAAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAAATT
260 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* *
19669209 TT-AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCC
325 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
19669273 ATGAAACTTCACGCGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATT-
390 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
19669337 -CAAATGCAGAAGAATTGTGACGATTGTGCCTAAA-CCACCT-CCACTCTATCAGAGTCCCACGG
455 GCACA--CAG-A-AA-TATGAAGA-TGTGCCTAAACCCACCTACCACCCTATC-GA-T-CCACGG
* *
19669399 CTTGCGCATGCCCGTATCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCCGCTCGTTCATCGGTT
511 CTTGCGCAT-CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCT-CG-T--TTCATCGGTT
* * * **
19669464 GTCTTAGG-AGTACGGAG-T--TT--C-A--T----TCCG-CCAG-CACGTGGGTTGTGGCAGCA
571 GGCTTAGGCA-TACGGAGTTCATTCCCAATCTAAGATCAGACCAGAC-CGAGGGTTGTGATAGCA
* * * * * * * * *
19669514 GGAT-GCCAGCAGCGTGGAGGGGGA-CCGGTTGATCCCTGGCTTGCACATCTCGCCTCTATGGTC
634 GGATCGGCAGCA-CGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
*
19669577 GGCTGAGCGCCCGCACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
698 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *** * * * *
19669642 GTATACGGAGTTCTTTCTTGGTCTAACATCAGACCAGATCGAGGGTAGCGGCAGCACATGCTGGG
763 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
19669707 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCGT-CGGGGCACCATCGCCAGAGCATTGTCGGAG
828 CTCGGGCATGTGCTGGTGCCACATTTTTCTTC-TCCGGGGCACCATCGCCGGAGCATCGTCGGAG
*
19669771 AACCA
892 AACCT
* * * * * *
19669776 GGCCAATGGCATTGGGATTCCGGCGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
1 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* *
19669841 GGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
19669906 CCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGTG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
19669971 ACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCA
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * *
19670036 TGCCAACAAAAATACAAGGATCACATCTGCCATGTTTGGGGCCAAAACTTCTTCCAAAAAAATTT
261 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
*
19670101 TAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
326 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*** *
19670166 TGAAACTTGTTGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGG
391 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
19670231 CACAAAAAAATATGAAGATGTG-CTAAACCCACCTACCATCCTATCGATCCACGGCTTACGCATC
456 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * *
19670295 CCGTCTTTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTTGTTTCGTTGGTTGGCTTAGGCATACGG
521 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* * * * * *
19670360 AGTTCACTCCCAATCTAAGATCAGACCGGACCGAGGGTTATGATAGCAGGATCGGTAGCACGCAA
586 AGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGATAGCAGGATCGGCAGCACGTAG
* * * *
19670425 AGGGGGACCTGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCTGTACGC
651 AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * *
19670490 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCGAAGCATATGGAGTGT-GTTC
716 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT-TCATTC
* * *
19670554 CCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
780 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* ** *
19670619 GCCGCATTTTTCTTCTCCAAGGCACCATCACCGGAGCATCGTCGGAGAACCT
845 GCCACATTTTTCTTCTCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
* * * ** * * *
19670671 TACCGGCGGCATTGGGGTTTCGGTGATCGGGGGGGCC-GGGGGGTGTGCACACATGATGTTCAAT
1 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* * * * *
19670735 GGGTGATGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATAACC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
19670800 CCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* ** *
19670865 ACACTTTTTTCAAATGGTCACAAAATCGTGTACACTTATAGTTTTTAGCTGAATTTTATTGTGCA
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * ** *
19670930 TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTAGTTTCGAAAAAATTT
261 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
*
19670995 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
326 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
19671060 TTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGG
391 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*** * *
19671125 CATGTAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCGCAAC
456 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * ** * *
19671190 TCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCTTGCTCGTTTCGTCGGTTGGCTTAGGCATATGG
521 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* * * * * *
19671255 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGATAGCAGGATCGACAACATGTAG
586 AGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGATAGCAGGATCGGCAGCACGTAG
* * * ***
19671320 AGGGGGACCCGG-CTGATCCTCGGCTTACGCATCCCGCCCCTCTGGGCGGCTGAGCTTTCGCACG
651 AGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * *
19671384 CTCGTTTCGTGGGTTTAATTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGGGAGTTCTTTC
715 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * ***
19671449 CCAGTCTAAGATCGGATCAGATCGAGGGTTGCAAAAGCACATGCTGGGCTCGGGCATGTGCTGGT
780 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * *
19671514 GCCACATTTTTCTTCGCCGGGGCAACATCGCCAGAGCATCGCCGGAGAACTT
845 GCCACATTTTTCTTCTCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
* *
19671566 GGCCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGA
1 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGA
* * *
19671631 AGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCAAGAACTCACACC
65 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
19671696 CCCTTAAAGTGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
130 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
19671761 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGC
195 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
**
19671826 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAAAATT
260 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * ** ** * *
19671891 TTAAAAAAATCCCGAACTGTAAAAGGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCATCTCGC
325 TT-AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* **
19671956 CATAAAACTTCACGTGAAGGCTTATTGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
389 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** **
19672021 GGCACACAGAAATATGAAGATGAACCTAAACCCACCTACCACTTTATCGATCCACGGCTTGCGCA
454 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
19672086 TCCCGTCTCTCTAGCCAGCGCAGTGCCCGCCCGCCCGCCCGCCCGCCCACTCGTTTCATCGGTTG
519 TCCCGTCTCTCTGGCC-G-GC-GT---AG--TGCCCGCCCGCCCG----CTCGTTTCATCGGTTG
* * **
19672151 GTTTAGGCATACGGAGTTCATTCCCAGA-CTAAGATC-GAACCAGACCGAGGGTTGCGGCAGCAG
572 GCTTAGGCATACGGAGTTCATTCCCA-ATCTAAGATCAG-ACCAGACCGAGGGTTGTGATAGCAG
* * * * * * * *
19672214 GATCTGTAGCACATAGAGGGGGACACGATCGATCCCCGGCTTGCTCATCCAGCCCCTCTAGCCGG
635 GATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
** *
19672279 CTGAGCGCCCGCACGCTCAATTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
700 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * * *
19672344 ATGCGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACATCACATGCCGGGCT
765 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * *
19672409 CGGGCATGTACTGGTGCCGCATTTTTCTTCACCGAGGCACCGTCGTCGGAGCATCGTCGGAGAAC
830 CGGGCATGTGCTGGTGCCACATTTTTCTTCTCCGGGGCACCATCGCCGGAGCATCGTCGGAGAAC
19672474 CT
895 CT
* * *
19672476 TACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCC-GGGGGGTGTGTGCACATGATGTGCGAT
1 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* * *
19672540 GGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCTC-CATCAAACCTTGAGAACTCACACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
19672604 CCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAATTGTCTGAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
19672669 ACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGTTAAATTTTTTTGTGCA
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
19672734 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCCGAAAAAATTT
261 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* *
19672799 TAAAGAATC-CGGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGTC
326 TAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * * *
19672863 ATGAAACTTCATGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGTCATAAAAATTGCATTG
390 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * ** * *
19672928 GCA-AGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCTATAGCTTACGTA
455 GCACA-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * *
19672992 TCCCGTCTCTCTGGCCGGCGTAGTGCTCACCCGTCCGCTCATTTCATCAGTTGGCCTAGGCATAT
519 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * * * * * ** * **
19673057 GGTGTTCATTCCCAACCTAAGAT-TGAACTAGACCAAGGGTTGCGGCAGCAAGATCAACAGCACG
584 GGAGTTCATTCCCAATCTAAGATCAG-ACCAGACCGAGGGTTGTGATAGCAGGATCGGCAGCACG
* * * * *
19673121 TAGAGGGGGACCCGGCCGATCACCGGCTTGCGCATCCCGCCACTCTAGG-CGGCTGAGCACCCGT
648 TAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCT-GGCCGGCTGAGCGCCCGC
* *
19673185 ACGCTTGTTTCATGGGTTGAC-T-----T----AG----------G--T----ATACGGAGTTCA
712 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * *
19673224 TTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACAGCAGCACATGATGGGCTCAGGCATGTGCT
777 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * **
19673289 GGTACCACATTTTTCTTCGT-TGGGGCACCATCGTCGGAGCATCACCGGAGAACCT
842 GGTGCCACATTTTTCTTC-TCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
* * *
19673344 GACCGACGACATTGGGGTTCCGATGAT-TGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
1 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* *
19673408 GGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCACACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
19673473 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
19673538 ACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGCTTTTAGCTGAATTTTTTTATGCA
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
19673603 TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAACTCCTTCTG-AAAAATTT
261 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
** ** * *
19673667 TAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCA
326 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
19673732 CGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCTTTGG
391 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** * *
19673797 CATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGGTTGCGCATC
456 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
19673862 TCGTCTCTCTGGCCGACATAGTGCCTGCTCGCCCGCCCACCTGCTCGTTTCGTCGGTTGGCTTAG
521 CCGTCTCTCTGGCCGGCGTAGTG-C--C-CGCCCG--C-CC-GCTCGTTTCATCGGTTGGCTTAG
* * * * * * * *
19673927 GCATATGGAGTTCTTTCCGAGTCTAAGATTAGACC-GAACCGAGGGTTGGGGTAGCAGGATCGGT
578 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAG-ACCGAGGGTTGTGATAGCAGGATCGGC
* * * * *
19673991 AGCACGGAGAGTGGGACCCGGTCGATCTCTGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCG
642 AGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * * * * * *
19674056 CCCGCATGCTCGTATCGTGGGTTAACTTAGGCATATGGAGTTCATTCCTAGTCTAAACATGCGAA
707 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* ** * * *
19674121 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCACATGTTGGGCTTGAGCAT
772 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
** * *
19674186 GTGCTGGTGCCGTATTTTTCTT-T-----G-----TCG-AGGCACCATCGTCGGAGAACCT
837 GTGCTGGTGCCACATTTTTCTTCTCCGGGGCACCATCGCCGG-AGCATCGTCGGAGAACCT
* * ** * * *
19674235 GACTGACGGCATTGGGGTTCCGACGATCGAGGGGGTAGGGGGGGTGTGTGCACATTACGTGCGAT
1 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* * * * * *
19674300 GGGTGCTAGTA-TTGGCCCTTATATTGGCCCCCTATACCTGATCAAACCTCGAGAAGTAACACTC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
19674364 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTGAAGTGTCTGAAATGGGA
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* ** * *
19674429 ACACTTTTTTCAAATGGTCCCAAAATCTCATATACTTCGAGTTTTTAGCTGAAATTTTTTGTGCA
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
19674494 TGCCAACAAAAATACAAGGATCATGTCTACGAGGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
261 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * *
19674559 TAAAAAATTTTGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
326 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * **
19674624 TGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTTT
391 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** *
19674689 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATC
456 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
19674754 CTGTCTCTCTGGTCGGCGGAGTGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGG
521 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* *** * * * *
19674819 GGTTCATTCCTGGTCTAAGATCGGACCCCG-CCGAGGGTTGTGATAGCAGGATCGGTAGCACGCA
586 AGTTCATTCCCAATCTAAGATCAGA-CCAGACCGAGGGTTGTGATAGCAGGATCGGCAGCACGTA
* * * * * * *
19674883 GAGGAGGACCTGGCCGATCCCCAGCTTACGCGTCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
650 GAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * *
19674948 CTCGTTTCGTGGCTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTC
715 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
** ** * **
19675013 CCAGTCTAAGATCAAACTGGACCGAGGGTTGCGGCAGCACATACTGGGCTCTAGCATGTGCTGGT
780 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* *
19675078 GCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
845 GCCACATTTTTCTTCTCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
* * * *
19675130 GACTGACAGCATTGGGGTTCCGACGATCGGGGGGGCCGTGGGGGGTGTGCGCACATGATGCGTGA
1 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGA
*
19675195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
65 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
19675260 CCCTGAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
130 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
19675325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGC
195 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
19675390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAAATCCTTCCGAAAAAATT
260 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * ** * *
19675455 TTAACAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCC
325 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
19675520 ATGAAACTTCACCTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
390 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
19675585 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTAT
455 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
19675650 CCCGTCTCTTTGGTCGACGTAGCG-ACCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGG-TT
520 CCCGTCTCTCTGG-C--CG--GCGTA--G--TGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTT
* * * * * * * *
19675713 GAGGCATACGGAGTTAATTCCCAGTCTAAGCTCAGATCGGACCAAGGGTTG-CAGTAGCAGAATC
576 -AGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGA-TAGCAGGATC
* * * * * * ** *
19675777 GGCAGGAGGCAGAAGGGGACCTGGCCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGACTGA
639 GGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
19675842 GCGCCCGCATGCTCG-TTCTGTGGGTTGACTTGGGCATACGGAGTTTATTCCCA--CT---C-TA
704 GCGCCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * *
19675900 ---AG---A-T--C-G----A-ATC-G----GACCGATGGTTGCGGTAGCACAAGCTGGGCTCGG
768 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* * * **
19675945 GCATGTGC---T------TTGTTCAT-T--GGGGCACCATCGTCGGAGCATCACCGGAGAACCT
833 GCATGTGCTGGTGCCACATTTTTCTTCTCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
* * * *
19675997 GACCGATGGCATTGGGGTTCCGATGGTCGGGGGGGCC-GGGGGGTGTGCGAACATGATGTGCGAT
1 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* * * * ** * ** * **
19676061 GGATTGCAATAGCAGGA-TCGACAGCACGCAGAGGGGGACCCAGCCAAT-CCTCGGGATGCACGC
66 GG-GTGC--T-G--GTACTTG---GCCCTTATA-TTGG-CCC--CCTATCCCTC---AT-CAAAC
* *** * ***** * ** ** * * * *
19676124 TCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAG-TCTAAGCATACGGAGTTTACCC
114 -C---TCGAGAACTCACACCCCCTTAAAGAG--CATT-TGAGAT-T----TTACAG-GTTT-GCT
* * * * * * * ** *** *
19676188 GCAATCTAAG--ATCAGACTGGACCGAGGGTTGGGGCAGCACATGCTAGGCTCAGGCAT-GTGCT
165 GCCA-GT-AGCCATTAAAGT-GTCTGA--AATGGGG-A-CAC-T--T-TTTTCA--AATGGT-C-
* * * * *** * * **** * *
19676250 AGTGCCACAAT-TT-T-CTTCGTCGGGGTACCATCGCTGAAGCATCGCCTGAGAACCTGACCGAC
215 A----CAAAATCTTGTAC-ACTTC-GAGT-TTTTAGCTGAA--TTTTTTTGTG--CATG-CC-A-
* **** * ** * ** *** * ** *
19676312 GGCATTTGGGTTCCGGCGATCGGGGGCGT-TA--GGGGGGGGTGTGCGC-ACA-TGATGTGCG-A
266 -ACA--AAAATACAAG-GATC----ACGTCTACCAAGTTTGG-G-GC-CAAAACTCCT-TCCGAA
**** * *** * ** * * ** ** **** * * * * * *
19676371 TGGGTGTT--GGTA-CTTGGCCCTTATATTG-GCCCCCTATCCCTCACCAAACCTCGAGAACTCA
319 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT-CATGA--AAA-ATAGAAAAC-GA
** ** * ** * * * * *
19676432 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAA
379 -GTCGTCTT---G-CCA--TGA-AACTT-CACG--TG--A--AG--G-C-TT-AAGGGAC--CAT
** * * * * * *** * **
19676497 TG-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAAT-TTT
422 TGTATGA-A---TTTAC-AA--GCCATAAAA--ATG-GCA-TT-G-G--CACA-CAGAAATATGA
** ** ** ** *** * * * * *** *
19676560 TTATGCATGCC-AAA-AAAAATATAAGGATCA-CG-TCTAACAAGTTTGGGGCCAAAAC-TCCCT
471 AGATG--TGCCTAAACCCACCTACCACCCT-ATCGATC-CAC-GGCTT-GCG-CATCCCGTCTCT
******* * ****** **** *** * *
19676620 CTGAAAAAATTTGAAAAAATCCCGAACCACAAAAAGTTTCAAAAATC-G-TGAAAAATA-GAAAA
529 CTGGCCGGCGTAG-TGCCCGCCCG--CC-C-GCTCGTTTC----ATCGGTTG--GCTTAGGCATA
* ** ** *** * **
19676682 C-GAGTCGTC-TTGCC-ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
583 CGGAGT--TCATTCCCAATCTAAGATCA-GACCAGAC-CGAGGG----TTG--TG-A--T---AG
** * * ** **
19676744 CCATAAAAATGGTGCTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
632 -C---AGGATCG-GC-AGCAC---G---TA-G-AG--G-G--------------GGACCCGGTCG
* * * *
19676809 ATCCGCGACTTGCGCATCCC-CCCTCTCTGGCCGGCGTAGGGCCCGTCCGCCCGCCCGCTCGTTT
666 ATCCCCGGCTTGCGCATCCCGCCC-CTCTGGCCGGC-T---G--AG--CGCCCGCACGCTCGTTT
* * * * *
19676873 CGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-TGGA--TCGA-ACCAAGGG
722 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC-ATTCCCA--G
* ** * ** * * * ** *
19676933 TTGCAACAGAAGGATTGACAGCATATAGAGGG-GGACCCGGTCGATCCCCGGCTTGCGCATCCCG
784 -T-CTA-AGATCG---GAC--CAGACCGAGGGTTG---CGG-C-AGCACATGC-TGGGC-T--CG
** * * * *** ** * * ** *
19676997 CCCCTCCAACCG-GCTGAATGCCCGCA-CGCTCGTT-TCATGGG-----TTGACTTAGGCAT--A
832 ----GGC-A-TGTGCTG-GTG-CCACATTTTTC-TTCTCCGGGGCACCATCGCCGGA-GCATCGT
** *
19677052 CGGAGTTCAT
887 CGGAGAACCT
* * * * ** * *** * * *
19677062 -TCCCATTCTAAGCATAGGGAGTTCATTACCAGTCTAAGATCGGACCGGATCGAGGGTTGCAGCA
1 GACCGA--C--GGCATTGGG-GTTC-CGACGA-TC---GGGGGGGCCGG---G-GGGGTG-TGC-
* *** * ** * *
19677126 GCACAT-ATTGGGCTCAGACATGTGCT-G--C-T-GCCACATT-T-TT--CTTCGTTAGGGCAC-
50 GCACATGA-TGTG--C-GATGGGTGCTGGTACTTGGCC-C-TTATATTGGC-CCCCTA--TCCCT
* * ** * *** * ** * * ***
19677180 CATC--ACC-GGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGTTTCTGGGGGGGT
106 CATCAAACCTCGAGAA-CTCA-C-ACCCCCTTAAAG---AG-C-ATTTGAGATTT-T--ACAGGT
* * * ** * * * * * ** **
19677242 GTGC-GCACATGATGTGCTA-T-GGGTG-CTGGTACT-TGG-CCCTTATATTGGCCCCCTATCCC
160 TTGCTGC-CA-G-T-AGCCATTAAAGTGTCT-GAAATGGGGACACTT-T-TT----TCAAAT-GG
* ** * ** *** *** *
19677301 TCATCATAATTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGTCAT
213 TCA-CA-AAATCTTGTA--CACTTCGAGTT-TTTAGC---TGA-ATTTT-----TTTG-TG-CA-
** ** * * * ** * * *
19677366 TAGCCATTAAAGTGTCTAAAATGGGGAT-ACTTTTTTCAA--AT-GGTCACAAAA-TCTTGTACA
261 T-GCCAACAAA---AATACAA---GGATCACGTCTACCAAGTTTGGGGC-CAAAACTCCT-T-C-
**** ** ** * * ** * * ** * **
19677426 CTTTGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACTAAG
315 CGAAAAAATTTTA---AAA-AATCTCGAAC-CG-TAA-AAAGTTTCAAAAATCATG---A--AA-
** * * ** * * ** ** ** *
19677491 TTTGGGGCAAAA--ACTC--CTT-CCGAAAAAATTTTA--AAAAATCCCAA---ACCATAAAAAG
367 AAT--AG-AAAACGAGTCGTCTTGCC-ATGAAACTTCACGTGAAGGCTTAAGGGACCAT----TG
* ** *** *
19677546 TTTTGAAAAT-CGAGAAAAATAGAAAATGAGTCATCTTGC-CAC-GAAACTTCACGTGAAGGCTT
424 -TATGAATTTAC-A-AGCCATA-AAAATG-G-CAT-TGGCACACAGAAA--T-A--TGAA-G---
* * ** ** ** * * *** * * * *** *** *
19677608 AAGGGACCATTGTA-TGAGTTTACAAGCCATAAAAATGGCATTGGCAATAGAAATATGAAGATGT
473 ATGTG-CC--TAAACCCA-CCTACCA-CCCTATCGAT-CCA-CGGC--TTG-CGCATCCCG-TCT
* ** ** * *** * *** * * * * ***
19677672 CCCTAAACCCACCTAACACCCTATCAATCCACGACTTG-TGCATCTCGTCT--CTTTGGCCGGCG
527 CTCT-GGCCGGCGTAGTGCCC--GCCCGCC-CG-CTCGTTTCATC-GGT-TGGCTTAGGCATACG
* * * * *** ** * * * ** * *
19677734 TAGTGCCTGCCCGCCCT--G-TC-GTTTC-GTCGGTTGGCATATGCATACGGAGTTGATTC--CT
585 GAGTTCATTCCCAATCTAAGATCAG-ACCAGACCG-AGGGTTGTG-ATA-GCAG--GA-TCGGC-
* ** * ** ** * * * * * * * **
19677792 AG-TC-TA-AGATTGGACCAGACCGAGGGT-TGCGGC-AGCAGGATTGGCAGCACAT-AGAGGGG
642 AGCACGTAGAG-GGGGACCCGGTCGA---TCCCCGGCTTGC-GCA-T-CCCGCCCCTCTG-GCCG
* * * ** * * * *
19677851 GACCCGACCAATCCCCGACTTACGCATCTCGCCCCTC-T-GGTCGGCTGAGAGCCCGTACGCTCA
699 G--CTGAGC---GCCCG-C--ACG---CTCG--TTTCGTGGGTTGACTTAG-G--CATA------
* *
19677914 TTTAGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAG
742 -----------------------CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
19677979 TCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCG
784 TCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA
* * * *
19678044 TATTTTTCTTCGT-TGAGGCACCATCGCTGGAGCATCGTCGGAGAACCT
849 CATTTTTCTTC-TCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
* * * * **
19678092 GATCGACGGCATTAGGGTTCCGATGATCGGGGGTGCC-GGGGGGCATGCGCACATGATGTGCGAT
1 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* *
19678156 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCATACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
** * * *
19678221 TTTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGGCAGTAGCCATTAAAGTGTCCGAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
** * * *
19678286 ACACTTTTTTCAAATGAACACAAAATCTTGTACACTTTGAGTTCTTAGCTGAATTTTTCTGTGCA
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
19678351 TGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACGCCTTCCAAAAAAATTT
261 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * *
19678416 AAAAAAATCCCGAACCGCAAAAAGTTT-ATAAAATCATGAAAAATAGAAACCGAGTCGTCTTGCC
326 TAAAAAATCTCGAACCGTAAAAAGTTTCA-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
19678480 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
390 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
***
19678545 GCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
455 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * * *
19678610 ACCGTCTCTTTGGCTGACGTAGT----GCCCGCCCGCTTGTGTCGTCGGTTGGCTTAGGCATACG
520 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* * ** * * * *
19678671 GAGTTGATTCCCAGTCTAAGATCAGA-TTG---GAGGGTTGCGACAACAGGATCGGCAGCACGCA
585 GAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGATAGCAGGATCGGCAGCACGTA
* * * * * *
19678732 AAAGGGGACCCAGTCGATCCCCGGCTTGCGCATCCC-CTCATCTGGCCGGCTGAGCACCCGCACG
650 GAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
** * * * *
19678796 CTCGTTTCGTGATTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAATCATACAGAGTTTATTC
715 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * **
19678861 CCAATCTAAGATCGGATC-GAACTGAGGGTTGTAGCAGCACATGCTGGGCTCGGGCATGTGCTGG
780 CCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * *
19678925 TGCCACATTTTT-TTCGT-CGGGGCACCATCGTCAGAGCCTCG-CAGGAGAGCCT
844 TGCCACATTTTTCTTC-TCCGGGGCACCATCGCCGGAGCATCGTC-GGAGAACCT
* * * *
19678977 GATCGACGGCATTGGGGTTTCGACGATTGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGTGAT
1 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
*
19679041 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
19679106 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAG-CAGTAGCCATTAAAGTGTCTGAAATGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
19679170 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATCC
195 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
19679235 AAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
260 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * *
19679300 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGGGCCGTCTTGCC
325 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
19679365 ATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTG
390 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * * *
19679430 GCACGTATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGTGCAT
455 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
19679495 CCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCATCCTCTCACTCGTTTCATCAGTTGGCTTA
520 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG------C-C-CGCTCGTTTCATCGGTTGGCTTA
* * * * * ** ** * *
19679560 GGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCAAGGGTTACGGCAACAGGATCGGT
577 GGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGATAGCAGGATCGGC
** * ** * * * *
19679625 AGCACACAGAAGGGGACCCGACCGATCCTCAGCTTGCTCATCCCGCCCCTCTAGCCGG-TCGAGC
642 AGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-GAGC
* * * * *
19679689 GTCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTTATTCCAAGTCTAAGCATACGA
706 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * *
19679754 AGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCACATGCTAGGCTCGGGCA
771 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
*
19679819 TGTGCTGGTGCCACATTTTTCTTCGT-CAGGGCACCAT---C---G---C--CGGAGAACCT
836 TGTGCTGGTGCCACATTTTTCTTC-TCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
* * * *
19679869 GACCGGCGGCATTGGGGTTCCGATGATCGGGGGTGCC-AGGGGGTGTGCGCACATGATGTGCGAT
1 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
*
19679933 GGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * *
19679998 CCTTAAAGAGAATTTGAGATTTTACAGGTTTGGTGCCAGTAGCCTTTAAAGTGTCTAAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
19680063 ATACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
19680128 TGCCCACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
261 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * **
19680193 GAAAAAATC-CTGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCC
326 TAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* ** *
19680257 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGGATTCGCAAGCCATAAAAATTGCATTG
390 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * ** *
19680322 GCAC-CTAGAAATATGAAGATGTGCCTAAACCCAGCTACCATCCTATTGATCCAAAGCCTGCGCA
455 GCACAC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * ** * *
19680386 TCCCGTCTCTCTGGCTGTCGTAGTGCCCGCTTGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATAC
519 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * * * ** *
19680451 GGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGAGTTGTGGCAGCAGGATCGACAGCACGT
584 GGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGATAGCAGGATCGGCAGCACGT
* * * * * *
19680516 AGAGGGGAACCTGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTAT
649 AGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
19680581 GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
714 GCTCGTTTCGT-GG--G---T-----T---GA---C-TT---AG-----GCATACGGAGTTCATT
* *
19680646 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGATGGTTGCGACAGC
753 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
* * ** * ** *
19680711 ACATGCTGGGCTCGAGCATGTGCTGGTGTCGTATTTTTCTTCAT-CGAGGCACCATCATCGAAGC
818 ACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC-TCCGGGGCACCATCGCCGGAGC
19680775 ATCGTCGGAGAACCT
882 ATCGTCGGAGAACCT
* * *** *
19680790 GACCGACGGTATTGGGGTTCCGACAATCGGGGGCATCGGGGGGGTGTGCGCACATGATGTGTGAT
1 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* *
19680855 GGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
19680920 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * * *
19680985 ACACTTTTTTCAAATGGTGACAAAATCTTGTGCATTTCGAGTTTTTATCTGAATTTTTTTATGCA
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * *
19681050 TGCCAAAAAAAAAACAAGGATCACATATACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTT
261 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
** *
19681115 TAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATTGTAAAAAATAGAAAACGAGTCGTCTTGCC
326 TAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
19681179 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTG
390 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*** * * *
19681244 GCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATTCATGGCTTGCGCAT
455 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
** *
19681309 CCCGTCTCTCTGGATGACGCAGT-GCCTGCCCGCCCTCCCGCCCGCTCGTTTCGTCGGTTGGCTT
520 CCCGTCTCTCTGGCCG--GC-GTAG--TGCCCG----CCCGCCCGCTCGTTTCATCGGTTGGCTT
* * * * * * * *
19681373 A-GCAATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GAATCAAGGGTTGCGGTAACAAGATC
576 AGGC-ATACGGAGTTCATTCCCAATCTAAGATCAGACCAG-ACCGAGGGTTGTGATAGCAGGATC
* * * * * * *
19681436 GACAGCACGCAAAGGGGAACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGA
639 GGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
19681501 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAG-AT-T
704 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
*** * ** * * *
19681564 GGA--TCGGACCGAGGGT-TGTGGTAGTAGGATCAACAG-CACGTAAAGGG-GGACCTGGTCGAT
769 GGAGTTCATTCCCA--GTCT-AAG-A-TCGGA-C--CAGAC-CG---AGGGTTG--C-GG-C-AG
* ** * ** * * ** * *** *
19681624 CCCCGGCTTGCGCATCCCGCCCCTTTGGCCGATTGAGCACCCGCA-CGCTCGTT-TCGTGGGTTG
817 CACATGC-TGGGC-T--CGGGCATGT-G-C---TG-G-TGCCACATTTTTC-TTCTC-CGGG--G
* * * * * *** *
19681687 ACTTAGGCAT--ACAGAGTTCATTCCTAGTCTAAGCAT
867 -C--A-CCATCGCCGGAG--CA-TCGTCGGAGAA-CCT
*** *** * * ** * * * * * *
19681723 -A-CGAAATTCATTCCCAG-T-CTAAGATCGGACCGGACC-GAGGGTTGCGGCAGCACATGCTGG
1 GACCG-ACGGCATT-GGGGTTCCGACGATCGG-GGGGGCCGGGGGGGTG-TGC-GCACATGATGT
* * * **** * ** * * * * * *
19681783 GCTCGA-GCATGTGCTAGTGCCGTATTTTTCTTCGT-CGGGGCGCC-AT-CGTCGGAGC-ATCGT
61 G--CGATG--GGTGCTGGT-AC-T-TGGCCCTT-ATATTGGCCCCCTATCCCTC--ATCAAACCT
* ** * *** ** * * ******** * *
19681843 CGGAGAACCTGACCGACGGCATTGGGGTTCCGATAATCGGGGGCGCGGGGGGGGGGGTGTGC-AC
116 C-GAGAA-CTCA-C-ACCCCCTTAAAG-AGC-AT--T------TGAGATTTTACAGGTTTGCTGC
* * **** * * ** * **
19681907 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
167 -CA-G-T-AGCCATTAAAG-T-GT-C-T-G-----AAATGGGGACACT-T---TTTTCAAA--T-
**** ** * * * ** ** *
19681972 GAGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTA-C--AGGTTTGCTG-GCAGTAG-CAAT
211 G-G---TCACAAAATCTTGTACA-C-TTCGAGTTTTTAGCTGAATTTTTTTGTGCA-T-GCCAAC
* * * * * * *** * * * * * *
19682032 TAAAGTGTCTGAAATGGAGACACTTTTTTGAA--AT-GGTCACAAAA-T-CTT--G-TACACTTC
268 AAAAAT-AC---AA-GGA-TCACGTCTACCAAGTTTGGGGC-CAAAACTCCTTCCGAAAAAATTT
* *** * * *** * *** * * **
19682089 T----AGT-TTTTAGC-TGAATTTTTTTATGCATGCCAAGAAAAATACAAGGATCACGTCTACCA
326 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT--CATGAAAAATAGAA--A--ACGAGT--C-
** *** ** * * **
19682148 AGT-TTGGGGCCA--AAACTCCTTC-CGAAAAAATTTTGAA-AAATCCCGAACTCTAAAAAGTTT
382 -GTCTT---GCCATGAAA---CTTCACG-TGAAGGCTT-AAGGGA--CC--ATTGTATGAA--TT
** * * * * * * *
19682208 TGA-AAATCGTGAAAAATAGAAAACGAATCGTCTTGC-CATGAAACTTCACGTGAATGCTTAAGG
432 T-ACAAGCCAT-AAAAAT-G-----GCATTGGC--ACACA-GAAA--T-A--TGAA-G---ATGT
** *** ** * * *** * * ** * *** *
19682271 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATAAGATGTGC-CT
477 G-CC--TAAACCCACCTACCA-CCCTATCGAT-CCA-CGGCTTGC-G-CAT-CCCG-TCT-CTCT
** ** * *** * * ** * *
19682335 AAACCCACCTACCACCCTATCGATCCACGGCTTTCGCATCCCGTCTC-TCTGGCCGACGTAATGC
531 -GGCCGGCGTA-GTGCC---CG--CC-C-GC--CCGC-T--CGTTTCATC-GGTTGGC-TTA-G-
* *** ** ** ** * * * * * * *** **
19682399 CCGCCCGCCCGTTCATT--TTATCGGTTGGCTTAG-GCATA-CG-GAGTTCATTCCCAGTCTACC
578 GCATACG-GAGTTCATTCCCAATC--TAAGATCAGACCAGACCGAGGGTT--GTGATAG-C-AGG
* * * * *** * * * * * ***
19682459 ATCAG-ACCA-GATCGAGGGTTGTGGCAGTAGGAT---TGG-TAGCACATAGAGGGGGACCCAAC
636 ATCGGCAGCACG-TAGAGGG-GGACCCGGT-CGATCCCCGGCTTGCGCAT----CCCG-CCC--C
** * * ** * * * *
19682518 -CGATCCCCGACT-TGCGCATCCTTACCCTC-TGGTCGGTTGAGCGCCCGCACGCTTGTTTCATG
691 TC--TGGCCGGCTGAGCGC--CCGCACGCTCGT-TTC-GTGGG----------------------
* *
19682580 GGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGA
728 --TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * *
19682645 TCAGACCGGACCGAAGGTTGCGGTAGCACATGTTGGGCTCGGGCATGTGCTGGTGTCGCATTTTT
791 TCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTT
* * * *
19682710 CTTCGT-CGGGGCACCATCGTCTGAGCATCATCGGGGAACCT
856 CTTC-TCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
* * * * * * * * *
19682751 GATCGGCAGCATTGGGGTTCTGGCGATCGGGGGGACC--GAGGG-GTGCACACAAGATGTGCGAT
1 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* * * * *
19682813 GGGTGCTGGTGCTTGGACCATATATTGGCCCCCTATCCGTCATCAAACCTCAAGAACTCACACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
19682878 CTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTAAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
19682943 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCA
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
19683008 TGCCAACAAAAATACAAGGATGATGTCTACTAAGTTTGGGGCCAAAATTCCTTCC-AAAAAACTT
261 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TT
* **
19683072 TTAAAAAATCTCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
325 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
19683137 ATGAAACTTCACGTGAAGGCTTAAGAGACCATCGTATGAATTTACAAGCCATAAAAATGGTATTG
390 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
19683202 GCACATAGGAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACAT
455 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
** * * * *
19683267 CTTGTCTCTCTAGCCGGCGTAGTGCCCGCCTGCCTTTCAGCCCGCTTGTTTCGTCTGTTGGCTTA
520 CCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCC---C-GCCCGCTCGTTTCATCGGTTGGCTTA
* * * * * * * * * *
19683332 GGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGATGCGGTGGTAGGATCGGC
577 GGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGATAGCAGGATCGGC
* * * * * * * * *
19683397 AGCATGCAGTGGGGGACCCGATCGATCCCCAGCTTGTGCATCCAGCCCCTCTGGGCGGTTGAGCG
642 AGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * **
19683462 CCCGCACGCTCGTTTCGTTGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGA
707 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * *
19683527 GTTCATTCCCAATCTAAGATCGGACCAAACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCAT
772 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * * *
19683592 -TCGCTGGTGTCGCATTTTTCTTCGT-CGAGGCACCATCACCGGAGCATCG-CAGGAGAACTT
837 GT-GCTGGTGCCACATTTTTCTTC-TCCGGGGCACCATCGCCGGAGCATCGTC-GGAGAACCT
* * * *
19683652 GACCGACGGCATTGGGGTTTCGATGATCGGGGGGGCC-GGGCGGTGTGCGCACATGATGTCCGAT
1 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
*
19683716 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
19683781 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
19683846 ACACTTTTGTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATATTTTTGTACA
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
19683911 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAAATTT
261 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
*
19683976 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT-GAAAACGAGTCGTCTTGCCA
326 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
19684040 TGAAACTTCACGTGAAGGATTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCACTGG
391 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** * * *
19684105 CATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATC
456 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
19684170 CCGTCTCTCTGGTCGACGTAGTGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
521 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* * * ** ** *
19684235 AGTTCATTCCCAATCTAAGATCGGACCAAACCGAGGGCTGTGGCAGCAGGATCGATAGCACGCAG
586 AGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGATAGCAGGATCGGCAGCACGTAG
*** * * * * ** * *
19684300 AGGGGGACCCAACCAATCCCCGGCATGCGCATTCCGCCCCTTTCACCGACTGAGCGCCTGCACGC
651 AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * *
19684365 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTATAAGCATACGAAGTTCATTCC
716 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
*** *
19684430 CAGTCTAAGATCGGATTGGACCGAGGGTTGCGGTAGCACATG-T----T---G---G-GCTGGTG
781 CAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * *
19684483 CCATATTTTTCTT-TGTCGGGGCACCATCGCCGGAGCATTGCCGGAGAACCT
846 CCACATTTTTCTTCT-CCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
* * * *
19684534 GACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGTC-GGGGGGTGTGCGCACATGATGTACGAT
1 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* *
19684598 GGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * *
19684663 CTTTAAAGAGCATTTGATATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
19684728 ACACTTTTTTCAAA--ATCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTGTTTTGTGCA
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* **
19684791 TGCTAACAAAAATACAAGGATCTTGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
261 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
** * *
19684856 TAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCCTGCCA
326 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
19684921 TGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGG
391 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** * * * * * * *
19684986 CACGTAAAAATAT-AAGATGTGCCTGAACCGACCTACCACCCTATCAATCCATGGCTTACGTATC
456 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
** * * * ** * *
19685050 CCGTCTCTCTGGCCAACGTAATGCCCGCCCGCCCGTTCATTTCATCATTTAGCTTAGGCATATGG
521 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
** * * * * * *
19685115 AGTTCATTCCCAATCTAAGATTGGACCGGTCCGAGGGTTG-CAGCAGTAGGATCGGCAACACGTA
586 AGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGA-TAGCAGGATCGGCAGCACGTA
* * * * * * *
19685179 GAGGAGGACCCGATCGATCCCCGG-TATGCGTATCCTGCCCCTCTGGCCGACTGAGCACCTGCAC
650 GAGGGGGACCCGGTCGATCCCCGGCT-TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
19685243 GC
714 GC
19685245 ATTTTTCTTC
Statistics
Matches: 11806, Mismatches: 2608, Indels: 2120
0.71 0.16 0.13
Matches are distributed among these distances:
865 26 0.00
866 3 0.00
867 71 0.01
868 393 0.03
869 199 0.02
870 8 0.00
871 2 0.00
872 6 0.00
873 5 0.00
874 3 0.00
875 8 0.00
876 144 0.01
877 6 0.00
879 38 0.00
880 352 0.03
881 112 0.01
882 241 0.02
883 2 0.00
884 420 0.04
885 569 0.05
886 125 0.01
887 11 0.00
888 19 0.00
889 23 0.00
890 36 0.00
891 336 0.03
892 1061 0.09
893 17 0.00
894 812 0.07
895 684 0.06
896 45 0.00
897 725 0.06
898 203 0.02
899 6 0.00
900 16 0.00
901 236 0.02
902 393 0.03
903 320 0.03
904 50 0.00
905 181 0.02
906 189 0.02
907 217 0.02
908 66 0.01
909 16 0.00
910 444 0.04
911 5 0.00
912 3 0.00
913 6 0.00
914 7 0.00
915 8 0.00
916 6 0.00
917 4 0.00
918 17 0.00
919 16 0.00
920 6 0.00
921 49 0.00
922 465 0.04
923 14 0.00
924 18 0.00
925 13 0.00
926 15 0.00
927 12 0.00
928 8 0.00
929 15 0.00
930 158 0.01
931 31 0.00
932 37 0.00
933 36 0.00
934 21 0.00
935 16 0.00
936 22 0.00
937 34 0.00
938 13 0.00
939 16 0.00
940 13 0.00
941 4 0.00
942 19 0.00
943 11 0.00
944 11 0.00
945 10 0.00
946 4 0.00
947 7 0.00
948 6 0.00
949 11 0.00
950 9 0.00
951 13 0.00
952 18 0.00
953 7 0.00
954 9 0.00
955 11 0.00
956 5 0.00
957 7 0.00
958 9 0.00
959 20 0.00
960 27 0.00
961 25 0.00
962 20 0.00
963 8 0.00
964 11 0.00
965 17 0.00
966 9 0.00
967 19 0.00
968 13 0.00
969 15 0.00
970 19 0.00
971 10 0.00
972 18 0.00
973 9 0.00
974 15 0.00
975 19 0.00
976 16 0.00
977 20 0.00
978 37 0.00
979 31 0.00
980 31 0.00
981 34 0.00
982 20 0.00
983 19 0.00
984 17 0.00
985 7 0.00
986 5 0.00
987 10 0.00
988 25 0.00
989 10 0.00
990 9 0.00
991 1 0.00
992 1 0.00
993 13 0.00
994 8 0.00
995 1 0.00
996 4 0.00
997 3 0.00
998 6 0.00
999 2 0.00
1000 7 0.00
1001 8 0.00
1002 4 0.00
1003 9 0.00
1004 4 0.00
1005 45 0.00
1006 21 0.00
1007 18 0.00
1008 21 0.00
1009 18 0.00
1010 5 0.00
1011 22 0.00
1012 18 0.00
1013 50 0.00
1014 24 0.00
1015 19 0.00
1016 28 0.00
1017 5 0.00
1018 15 0.00
1019 20 0.00
1020 11 0.00
1021 20 0.00
1022 14 0.00
1023 17 0.00
1024 367 0.03
1025 426 0.04
1026 433 0.04
1027 422 0.04
1028 420 0.04
1029 371 0.03
1030 486 0.04
1031 261 0.02
1032 339 0.03
1033 323 0.03
1034 316 0.03
1035 205 0.02
1036 361 0.03
1037 269 0.02
1038 366 0.03
1039 214 0.02
1040 252 0.02
1041 292 0.02
1042 239 0.02
1043 197 0.02
1044 206 0.02
1045 167 0.01
1046 211 0.02
1047 378 0.03
1048 379 0.03
1049 133 0.01
1050 98 0.01
1051 156 0.01
1052 128 0.01
1053 276 0.02
1054 130 0.01
1055 131 0.01
1056 77 0.01
1057 157 0.01
1058 124 0.01
1059 221 0.02
1060 241 0.02
1061 318 0.03
1062 124 0.01
1063 51 0.00
1064 122 0.01
1065 101 0.01
1066 64 0.01
1067 67 0.01
1068 117 0.01
1069 131 0.01
1070 77 0.01
1071 115 0.01
1072 175 0.01
1073 169 0.01
1074 68 0.01
1075 147 0.01
1076 47 0.00
1077 59 0.00
1078 38 0.00
1079 77 0.01
1080 27 0.00
1081 24 0.00
1082 7 0.00
1083 12 0.00
1084 14 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGATAGCAGGATCGGCAGCACGTAG
AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
CAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
CCACATTTTTCTTCTCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
Found at i:19671442 original size:26 final size:26
Alignment explanation
Indices: 19671406--19671458 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19671396 GTTTAATTAG
19671406 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19671432 GCATAGGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19671458 G
1 G
19671459 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19675517 original size:897 final size:892
Alignment explanation
Indices: 19668894--19675901 Score: 7860
Period size: 897 Copynumber: 7.8 Consensus size: 892
19668884 AAGACCGACG
* * * *
19668894 GCATTAGGGTTTCGACGATCGGGGGGGCC--TGGGGTGTGCGCACAGGATGTGCGATGGGTGCTG
1 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* ** *
19668957 GGACTTGGCCCTTATATTGGCCCCCTATCCCTCGCCAAACCTCGAGAACTCATACCCCCTTAAAG
66 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
19669022 AGCGTTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
131 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
19669087 TTTAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTATGCATGCCAAA
196 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTATGCATGCCAAC
* * * *
19669152 AAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAAATTTT-AAAAA
260 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
* ** *
19669216 TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACT
325 TCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
19669281 TCACGCGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTCAAATGCA-
390 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT----TGCAC
* * * * *
19669345 GAAGAATTGTGACGATTGTGCCTAAA-CCACCT-CCACTCTATCAGAGTCCCACGGCTTGCGCAT
451 GCAGAAATATGAAGA-TGTGCCTAAACCCACCTACCACCCTATC-GA-T-CCACGGCTTGCGCAT
* * * * * * *
19669408 GCCCGTATCTCTGGCCGACG-TAG-TGCCCGCCCGCCCGCTCCGCTCGTTCATCGGTTGTCTTAG
512 -CCTGTCTCTCTGGTCGGCGCGAGCTGCCCGCCCGCCTGCT-CG-T--TTCATCGGTTGGCTTAG
* ** **
19669471 G-AGTACGGAGTTTCATTCC-G-C------CAG---CA--CGTGGGTTGTGGCAGCAGGAT-GCC
572 GCA-TACGGAG-TTCATTCCGGTCTAAGATCAGACCCAGCCGAGGGTTG-GATAGCAGGATCGGT
** ** * * * * * * *
19669521 AGCAGCGTGGAGGGGGACC-GGTTGATCCCTGGCTTGCACATCTCGCCTCTATGGTCGGCTGAGC
634 AGCA-CGCAGA-GGGGACCTGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
19669585 GCCCGCACT-CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATACG
697 GCCCGCA-TGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATAC-
* *** * * ** * * * *
19669649 GAGTTCTTTCTTGGTCTAACATCAGACCAGATCGAGGGTAGCGGCAGCACATGCTGGGCT-TGGG
760 GAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACAT-ATGGGCTCT-AG
* * * * *
19669713 CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATTGTCGGAGAACCAGG
823 CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
** *
19669778 CCAATG
888 CTGA-C
* * *
19669784 GCATTGGGATTCCGGCGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
1 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
19669849 GTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCATAAAG
66 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
19669914 AGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGTGACACTTTT
131 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
19669979 CTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
196 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACA
** * * * **
19670044 AAAATACAAGGATCACATCTGCCATGTTTGGGGCCAAAACTTCTTCCAAAAAAATTTTAAAAAAT
261 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT
* * ** *
19670109 CTCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
326 CTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*** * * ** *
19670174 GTTGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACAAAAA
391 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTGCACGCAGA
* * * *
19670239 AATATGAAGATGTG-CTAAACCCACCTACCATCCTATCGATCCACGGCTTACGCATCCCGTCTTT
456 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCT
* * * * *
19670303 CTGGTCGGCG-TAG-TGCCCGCCCGCCCGCTTGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCA
521 CTGGTCGGCGCGAGCTGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
* ** * * *
19670366 CTCCCAATCTAAGATCAGA-CCGGACCGAGGGTTATGATAGCAGGATCGGTAGCACGCAAAGGGG
586 -TTCCGGTCTAAGATCAGACCCAG-CCGAGGGTT-GGATAGCAGGATCGGTAGCACGCAGA-GGG
* * * * * *
19670430 GACCTGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCTGTACGCTCGTT
647 GACCTGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCGTT
* * * *
19670495 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCGAAGCATATGGAGTGT-GTTCCCAGT
712 TCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATA-CGAGT-TCATTCCCAGT
* * ** *
19670559 CTAAGATCGGA-TCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
775 CTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACAT-ATGGGCTCTAGCATGTGCTGGTGCCA
** ** * * *
19670623 CATTTTTCTTC-TCCAAGGCACCATCACCGGAGCATCGTCGGAGAACCTTACCGGC
838 CATTTTTCTTCGT-CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGAC
* ** * * * *
19670678 GGCATTGGGGTTTCGGTGATCGGGGGGGCC-GGGGGGTGTGCACACATGATGTTCAATGGGTGAT
1 -GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
19670742 GGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATAACCCCTTAAA
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
19670807 GAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
130 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* ** * *
19670872 TTTCAAATGGTCACAAAATCGTGTACACTTATAGTTTTTAGCTGAATTTTATTGTGCATGCCAAC
195 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
* **
19670937 AAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTAGTT-TCGAAAAAATTTTAAAAA
260 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAA
* * ** * *
19671001 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAAC
324 ATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * *
19671066 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGTA
389 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTGCACGCA
* *
19671131 GAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCGCA-ACTCGTC
454 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT-GTC
* ** * * *
19671195 TCTCTGGCCGGC-ATAG-TGCCCGCCCGCTTGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGT
518 TCTCTGGTCGGCGCGAGCTGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
* * ** * * *
19671258 TCATTCCCAGTCTAAGATCGGA-CCAGACCGAGGGTTGCGATAGCAGGATCGACAACATGTAGAG
583 TCATT-CCGGTCTAAGATCAGACCCAG-CCGAGGGTTG-GATAGCAGGATCGGTAGCACGCAGA-
* * * * *** *
19671322 GGGGACCCGGCTGATCCTCGGCTTACGCATCCCGCCCCTCTGGGCGGCTGAGCTTTCGCACGCTC
644 GGGGACCTGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTC
* * * * * *
19671387 GTTTCGTGGGTTTAATTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGGGAGTTCTTTCCCA
709 GTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATA-CGAGTTCATTCCCA
* * *** * **
19671452 GTCTAAGATCGGA-TCAGATCGAGGGTTGCAAAAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
773 GTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACAT-ATGGGCTCTAGCATGTGCTGGTGC
* * * * * * * *
19671516 CACATTTTTCTTCGCCGGGGCAACATCGCCAGAGCATCGCCGGAGAACTTGGCCGAC
836 CACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGAC
* *
19671573 GGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGAAGGGTGC
1 -GCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
19671638 TGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
64 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
19671703 AGTGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
129 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
19671768 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAA
194 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA
* **
19671833 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAAAATTTTAAAAA
259 CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAA
* * * * * * * *
19671898 AATCCCGAACTGTAAAAGGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCATCTCGCCATAAAA
323 AATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
** * *
19671963 CTTCACGTGAAGGCTTATTGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
388 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTGCACGC
** ** *
19672028 AGAAATATGAAGATGAACCTAAACCCACCTACCACTTTATCGATCCACGGCTTGCGCATCCCGTC
453 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTC
* ** * ** *
19672093 TCTCTAGCCAGCGCAGTGCCCGCCCGCCCGCCCGCCCGCCCACTCGTTTCATCGGTTGGTTTAGG
518 TCTCT-G---G-TC-G-G--CGCGAG-CTGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGG
* * * ** *
19672158 CATACGGAGTTCATTCCCAGACTAAGATC-GAACCAGACCGAGGGTTGCGGCAGCAGGATCTGTA
573 CATACGGAGTTCATT-CCGGTCTAAGATCAGACCCAG-CCGAGGGTTG-GATAGCAGGATCGGTA
** ** * * * *
19672222 GCACATAGAGGGGGACAC-GATCGATCCCCGGCTTGCTCATCCAGCCCCTCTAGCCGGCTGAGCG
635 GCACGCAGA-GGGGAC-CTGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCG
* ** ** * *
19672286 CCCGCACGCTCAATTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATGCGAA
698 CCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATACG-A
* ** * * ** **
19672351 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACATCACATGCCGGGCTCGGGCAT
762 GTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACAT-ATGGGCTCTAGCAT
* * ** * * * *
19672416 GTACTGGTGCCGCATTTTTCTTCACCGAGGCACCGTCGTCGGAGCATCGTCGGAGAACCTTACCG
826 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTG
19672481 AC
891 AC
* *
19672483 GGCATTGGGGTTCCGACGATCGAGGGGGCC-GGGGGGTGTGTGCACATGATGTGCGATGGGTGCT
1 -GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
19672547 GGTACTTGGCCCATATATTGGCCCCCTATCTC-CATCAAACCTTGAGAACTCACACCCCCTTAAA
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
19672611 GAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAATTGTCTGAAATGGGGACACTTT
130 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * *
19672676 TTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGTTAAATTTTTTTGTGCATGCCAAA
195 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
* * * *
19672741 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCCGAAAAAATTTTAAAGAA
260 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
* ** * *
19672806 TC-CGGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGTCATGAAAC
325 TCTC-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * * * *
19672870 TTCATGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGTCATAAAAATTGCATTGGCAAGCA
389 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTGCACGCA
* * ** * * *
19672935 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCTATAGCTTACGTATCCCGTCT
454 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCT
* * * * * * * * *
19673000 CTCTGGCCGGCG-TAG-TGCTCACCCGTCC-GCTCATTTCATCAGTTGGCCTAGGCATATGGTGT
519 CTCTGGTCGGCGCGAGCTGCCCGCCCG-CCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
*** * * * * ** * *** *
19673062 TCATTCCCAACCTAAGAT-TGAACTAGACCAAGGGTTGCGGCAGCAAGATCAACAGCACGTAGAG
583 TCATT-CCGGTCTAAGATCAGACCCAG-CCGAGGGTTG-GATAGCAGGATCGGTAGCACGCAGA-
* * * * * * *
19673126 GGGGACCCGGCCGATCACCGGCTTGCGCATCCCGCCACTCTAGG-CGGCTGAGCACCCGTACGCT
644 GGGGACCTGGCCGATCCCCGGCTTACGCATCCCGCCCCTCT-GGCCGGCTGAGCGCCCGCATGCT
* *
19673190 TGTTTCATGGGTTGAC-T-----TA--G-G-T-A----TA--C---G-----GAGTTCATTCCCA
708 CGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATACGAGTTCATTCCCA
* * * *
19673230 GTCTAAGATCGGA-TCAGACCGAGGGTTACAGCAGCACATGATGGGCTC-AGGCATGTGCTGGTA
773 GTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACAT-ATGGGCTCTA-GCATGTGCTGGTG
* ** *
19673293 CCACATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGAC
835 CCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGAC
* * *
19673351 GACATTGGGGTTCCGATGAT-TGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGTTGCT
1 G-CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
19673415 GGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCACACCCCCTTAAA
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
19673480 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAATGGGGACACTTT
130 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
19673545 TTTCAAATGGTCACAAAACCTTGTACACTTCGAGCTTTTAGCTGAATTTTTTTATGCATGCCAAC
195 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
*
19673610 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAACTCCTTCTG-AAAAATTTTAAAAAA
260 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
* * *
19673674 TCTCGAACCACAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCACGAAACT
325 TCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
19673739 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGC-TTTGGCATGCA
390 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTT-GCACGCA
* *
19673803 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGGTTGCGCAT-CTCGTC
454 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT-GTC
* * ** * *
19673867 TCTCTGGCCGACATAGTGCCTGCTCGCCCGCCCACCTGCTCGTTTCGTCGGTTGGCTTAGGCATA
518 TCTCTGGTCG-----GCGCGAGCT-GCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATA
* * * * * *
19673932 TGGAGTTCTTTCCGAGTCTAAGATTAGACCGAACCGAGGGTTGGGGTAGCAGGATCGGTAGCACG
577 CGGAGTTCATTCCG-GTCTAAGATCAGACCCAGCCGAGGGTT-GGATAGCAGGATCGGTAGCACG
* * * * * * *
19673997 GAGAGTGGGACCCGGTCGATCTCTGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCA
640 CAGAG-GGGACCTGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * *
19674062 TGCTCGTATCGTGGGTTAACTTAGGCATATGGAGTTCATTCCTAGTCTAAACATGCGAAGTTCAT
704 TGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATACG-AGTTCAT
* ** *
19674127 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCACATGTTGGGCT-TGAGCATGTGCT
768 TCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACAT-ATGGGCTCT-AGCATGTGCT
** * *
19674191 GGTGCCGTATTTTTCTTTGTCGAGG---CA----C----CATCGTCGGAGAACCTGACTGAC
831 GGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGAC
* ** * * *
19674242 GGCATTGGGGTTCCGACGATCGAGGGGGTAGGGGGGGTGTGTGCACATTACGTGCGATGGGTGCT
1 -GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * * * *
19674307 AGTA-TTGGCCCTTATATTGGCCCCCTATACCTGATCAAACCTCGAGAAGTAACACTCCCTTAAA
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
19674371 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTGAAGTGTCTGAAATGGGAACACTTT
130 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* ** * * *
19674436 TTTCAAATGGTCCCAAAATCTCATATACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAC
195 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
* *
19674501 AAAAATACAAGGATCATGTCTACGAGGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
260 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
* * * * ** * *
19674566 TTTTGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACA
325 TCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
19674631 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTTTCACGTAG
390 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTGCACGCAG
*
19674696 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGTCTC
455 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTC
*
19674761 TCTGGTCGGCG-GAG-TGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGGGTTC
520 TCTGGTCGGCGCGAGCTGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
* *
19674824 ATTCCTGGTCTAAGATCGGACCCCGCCGAGGGTTGTGATAGCAGGATCGGTAGCACGCAGAGGAG
585 ATTCC-GGTCTAAGATCAGACCCAGCCGAGGGTTG-GATAGCAGGATCGGTAGCACGCAGAGG-G
* * * *
19674889 GACCTGGCCGATCCCCAGCTTACGCGTCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
647 GACCTGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCGTT
*
19674954 TCGTGGCTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTC
712 TCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATAC-GAGTTCATTCCCAGTC
**
19675019 TAAGATCAAACTGGACCGAGGGTTGCGGCAGCACATACTGGGCTCTAGCATGTGCTGGTGCCACA
776 TAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATA-TGGGCTCTAGCATGTGCTGGTGCCACA
*
19675084 TTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGAC
840 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGAC
* *
19675137 AGCATTGGGGTTCCGACGATCGGGGGGGCCGTGGGGGGTGTGCGCACATGATGCGTGATGGGTGC
1 -GCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
19675202 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTGAA
64 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
19675267 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
129 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
19675332 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAA
194 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA
* * * * *
19675397 CAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAACAA
259 CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
* *
19675462 ATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAAC
324 ATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * *
19675527 TTCACCTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
389 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTGCACGCA
* *
19675592 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCT
454 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCT
* * * *
19675657 CTTTGGTCGACGTAGCGACCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGG-TTGAGGCATA
519 CTCTGGTCG--G-CGCGA--G-CTGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTT-AGGCATA
* * * * * * * * * * *
19675721 CGGAGTTAATTCCCAGTCTAAGCTCAGA-TCGGACCAAGGGTTGCAGTAGCAGAATCGGCAGGAG
577 CGGAGTTCATT-CCGGTCTAAGATCAGACCCAG-CCGAGGGTTGGA-TAGCAGGATCGGTAGCAC
* *
19675785 GCAGAAGGGGACCTGGCCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGC
639 GCAG-AGGGGACCTGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * * *
19675850 ATGCTCG-TTCTGTGGGTTGACTTGGGCATACGGAGTTTATTCCCACTCTAAG
703 ATGCTCGTTTC-GTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAG
19675902 ATCGAATCGG
Statistics
Matches: 5267, Mismatches: 697, Indels: 293
0.84 0.11 0.05
Matches are distributed among these distances:
867 11 0.00
868 375 0.07
869 198 0.04
873 2 0.00
874 2 0.00
875 8 0.00
876 137 0.03
877 7 0.00
879 1 0.00
880 4 0.00
881 25 0.00
882 3 0.00
883 5 0.00
884 278 0.05
885 40 0.01
886 17 0.00
887 11 0.00
888 17 0.00
889 21 0.00
890 24 0.00
891 328 0.06
892 540 0.10
893 8 0.00
894 582 0.11
895 666 0.13
896 34 0.01
897 678 0.13
898 180 0.03
899 6 0.00
900 2 0.00
901 4 0.00
902 81 0.02
903 3 0.00
904 9 0.00
905 179 0.03
906 178 0.03
907 210 0.04
908 62 0.01
909 3 0.00
910 327 0.06
911 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACA
AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT
CTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTGCACGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCT
CTGGTCGGCGCGAGCTGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
TTCCGGTCTAAGATCAGACCCAGCCGAGGGTTGGATAGCAGGATCGGTAGCACGCAGAGGGGACC
TGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCGTTTCGT
GGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGA
TCGGACTGGACCGAGGGTTGCGGCAGCACATATGGGCTCTAGCATGTGCTGGTGCCACATTTTTC
TTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGAC
Found at i:19677077 original size:26 final size:26
Alignment explanation
Indices: 19677047--19677099 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19677037 GTTGACTTAG
* *
19677047 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
19677073 GCATAGGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
19677099 G
1 G
19677100 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:19677961 original size:26 final size:26
Alignment explanation
Indices: 19677932--19677984 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19677922 GTTAACTTAG
19677932 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19677958 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19677984 G
1 G
19677985 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19678869 original size:26 final size:26
Alignment explanation
Indices: 19678819--19678869 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
19678809 TTGACTTAGG
* *
19678819 CATACGGAGTTCATTCCCAGCCTAAT
1 CATACAGAGTTCATTCCCAACCTAAT
* *
19678845 CATACAGAGTTTATTCCCAATCTAA
1 CATACAGAGTTCATTCCCAACCTAA
19678870 GATCGGATCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAACCTAAT
Found at i:19679749 original size:26 final size:26
Alignment explanation
Indices: 19679720--19679772 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19679710 GTTAACTTAG
* *
19679720 GCATACGGAGTTTATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
*
19679746 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
19679772 G
1 G
19679773 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:19680151 original size:892 final size:890
Alignment explanation
Indices: 19676118--19685244 Score: 7421
Period size: 885 Copynumber: 10.0 Consensus size: 890
19676108 TCCTCGGGAT
*
19676118 GCACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * * * * *
19676183 TA-CCCGCAATCTAAGATCAGACTGGACCGAGGGTTGGGGCAGCACATGCTAGGCTCAGGCATGT
66 CATTCC-CAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGT
* * * * *
19676247 GCTAGTGCCACAATTTTCTTCGTCGGGGTACCATCGCTGAAGCATCGCCTGAGAACCTGACCGAC
130 GCTGGTGCCACATTTTTCTTCGTCAGGGCACCAT--C---AGC--CG-CGGAGAACCTGACCGAC
* * *
19676312 GGCATTTGGGTTCCGGCGATCGGGGGCGTTAG-GGGGGGGTGTGCGCACATGATGTGCGATGGGT
187 GGCATTGGGGTTCCGACGATC-GGGG-G-T-GCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
19676376 GTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTT
248 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
19676441 AAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
313 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
19676506 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTATGCATGCC
378 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC
* * * * *
19676571 AAAAAAAATATAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCCTCTGAAAAAATTTGAAA
443 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* *
19676636 AAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
508 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*** *
19676701 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTGCTGGCACA
573 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * **
19676766 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCGACTTGCGCATCCCCC
638 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * *
19676831 CTCTCTGGCCGGCGTAGGGCCCGTCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGG
703 CTCTCTGGCTGACGTAGTGCCCGCCCGCCC-CTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
** * ** * * *
19676896 AGTTCATTCCCAGTCTAAGATTGGATCGAACCAAGGGTTGCAACAGA-AGGATTGACAGCATATA
767 AGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCA-ACAGGATCGACAGCACACA
* ** *** **
19676960 GAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCCAACCGGCTGAATGCCC
831 GAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * *
19677020 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAAGCATAGGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * ** * *
19677085 CATTACCAGTCTAAGATCGGACCGGATCGAGGGTTGC-AGCAGCACATATTGGGCTCAGACATGT
66 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGT
* * *
19677149 GCTGCTGCCACATTTTTCTTCGTTAGGGCACCATCA--C-CGGAGAACCTAACCGACGGCATTGG
130 GCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCAGCCGCGGAGAACCTGACCGACGGCATTGG
* * *
19677211 GGTTCCGACGATCGGGGGTTTCTGGGGGGGTGTGCGCACATGATGTGCTATGGGTGCTGGTACTT
195 GGTTCCGACGATCGGGGG-TGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
19677276 GGCCCTTATATTGGCCCCCTATCCCTCATCATAA-TTCAAGAACTCACACCCCCTTAAAGAGCAT
258 GGCCCTTATATTGGCCCCCTATCCCTCATCA-AACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * * *
19677340 TTGAGATTTTACAGGTTTGCGGTCATTAGCCATTAAAGTGTCTAAAATGGGGATACTTTTTTCAA
322 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * *
19677405 ATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAAT
387 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAAT
* * * *
19677470 ACAAGGATCATGTCTACTAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAA
452 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
** ** * * *
19677535 ACCATAAAAAGTTTTGAAAATCGA-GAAAAATAGAAAATGAGTCATCTTGCCACGAAACTTCACG
517 ACCGCAAAAAGTTTCAAAAATC-ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
19677599 TGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCATTGGCA-ATAGAAATA
581 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
* * * * * * *
19677663 TGAAGATGTCCCTAAACCCACCTAACACCCTATCAATCCACGACTTGTGCATCTCGTCTCTTTGG
646 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * *
19677728 CCGGCGTAGTGCCTGCCCG-CCCT-G-TCGTTTCGTCGGTTGGCATATGCATACGGAGTTGATTC
711 CTGACGTAGTGCCCGCCCGCCCCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* ** * * * * * *
19677790 CTAGTCTAAGATTGGACC-AGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACATAGAGGGGGAC
776 CCAGTCTAAGATCAGACCGA-ACCAAGGGTTGCGGCAACAGGATCGACAGCACACAGAAGGGGAC
* * * * * *
19677854 CCGACCAATCCCCGACTTACGCATCTCGCCCCTCTGGTCGGCTGAGAGCCC
840 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * * *
19677905 GTACGCTCATTTAGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
19677970 CATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
66 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
* ** * *
19678035 CTGGTGTCGTATTTTTCTTCGT-TGAGGCACCATCGCTGGAGCATCGTCGGAGAACCTGATCGAC
131 CTGGTGCCACATTTTTCTTCGTCAG-GGCACCAT--C---AGC--CG-CGGAGAACCTGACCGAC
* * **
19678099 GGCATTAGGGTTCCGATGATCGGGGGTGCCGGGGGGCATGCGCACATGATGTGCGATGGGTGCTG
187 GGCATTGGGGTTCCGACGATCGGGGGTGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * **
19678164 GTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCATACCCTTTTAAAG
252 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
19678229 AGCATTTGAGATTTTACAAGTTTGCTGGCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTT
317 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
** * * * *
19678294 TTCAAATGAACACAAAATCTTGTACACTTTGAGTTCTTAGCTGAATTTTTCTGTGCATGCCAAAA
382 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAA
* * * *
19678359 AAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACGCCTTCCAAAAAAATTTAAAAAAAT
447 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
*
19678424 CCCGAACCGCAAAAAGTTT-ATAAAATCATGAAAAATAGAAACCGAGTCGTCTTGCCATGAAACT
512 CCCGAACCGCAAAAAGTTTCA-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
19678488 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
576 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
*
19678553 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATACCGTCTC
641 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* *
19678618 TTTGGCTGACGTAGTGCCCGCCCG---CT---T-GTGTCGTCGGTTGGCTTAGGCATACGGAGTT
706 TCTGGCTGACGTAGTGCCCGCCCGCCCCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* ** * * * * *
19678676 GATTCCCAGTCTAAGATCAGATTG----GAGGGTTGCGACAACAGGATCGGCAGCACGCAAAAGG
771 CATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAACAGGATCGACAGCACACAGAAGG
* * * *
19678737 GGACCC-AGTCGATCCCCGGCTTGCGCATCCC-CTCATCTGGCCGGCTGAGCACCC
836 GGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
** * * *
19678791 GCACGCTCGTTTCGTGATTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAATCATACAGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * *
19678856 TATTCCCAATCTAAGATCGGATCGAACTGAGGGTTG-TAGCAGCACATGCTGGGCTCGGGCATGT
66 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGT
* * *
19678920 GCTGGTGCCACATTTTT-TTCGTCGGGGCACCATCGTCAGAGCCTCGCAGGAGAGCCTGATCGAC
130 GCTGGTGCCACATTTTTCTTCGTCAGGGCACCA---TC--AG-C-CGC-GGAGAACCTGACCGAC
* * * *
19678984 GGCATTGGGGTTTCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTG
187 GGCATTGGGGTTCCGACGATCGGGGGTGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
19679049 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAG
252 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
19679114 AGCATTTGAGATTTTACAGGTTTGCTAG-CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
317 AGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
19679178 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATCCAAGCCAAA
381 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAA
19679243 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
446 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * * *
19679308 TCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGGGCCGTCTTGCCATGAAACT
511 TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
19679373 TCACGTGAAGGCTTAAGGCACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCACGTAT
576 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
* *
19679438 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGTGCATCCCGTCTC
641 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
19679503 TCTGGCTGACGTAGTGCCCGCCCGCCCATCCTCTCACTCGTTTCATCAGTTGGCTTAGGCATACG
706 TCTGGCTGACGTAGTGCCCGCCCG--C--CC-CTCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * **
19679568 GAGTTCATTCCCAGTCTAAGATTAGATCGGACCAAGGGTTACGGCAACAGGATCGGTAGCACACA
766 GAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAACAGGATCGACAGCACACA
* * * * *
19679633 GAAGGGGACCCGACCGATCCTCAGCTTGCTCATCCCGCCCCTCTAGCCGG-TCGAGCGTCC
831 GAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-GAGCGCCC
* * * *
19679693 GCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTTATTCCAAGTCTAAGCATACGAAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * *
19679758 CATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCACATGCTAGGCTCGGGCATGTG
66 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
*
19679823 CTGGTGCCACATTTTTCTTCGTCAGGGCACCATC-G-C-CGGAGAACCTGACCGGCGGCATTGGG
131 CTGGTGCCACATTTTTCTTCGTCAGGGCACCATCAGCCGCGGAGAACCTGACCGACGGCATTGGG
* * *
19679885 GTTCCGATGATCGGGGGTGCCAGGGGGTGTGCGCACATGATGTGCGATGGTTGCTGGTACTTGGC
196 GTTCCGACGATCGGGGGTGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
19679950 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGA
261 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * *
19680015 GATTTTACAGGTTTGGTGCCAGTAGCCTTTAAAGTGTCTAAAATGGGGATACTTTTTTCAAATGG
326 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * *
19680080 TCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCCACAAAAATAGAA
391 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAA
* * *
19680145 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTGAAAAAATCCTGAACCG
456 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
**
19680210 CAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
521 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* ** * *
19680275 GCTTAAGGGACCATTGTATGGATTCGCAAGCCATAAAAATTGCATTGGCACCTAGAAATATGAAG
586 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
* * * ** * *
19680340 ATGTGCCTAAACCCAGCTACCATCCTATTGATCCAAAGCCTGCGCATCCCGTCTCTCTGGCTGTC
651 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGAC
** *
19680405 GTAGTGCCCGCTTG--CC-CGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
716 GTAGTGCCCGCCCGCCCCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* ** * * * ** * *
19680467 CTAAGATCAGACCAAACTGAGAGTTGTGGCAGCAGGATCGACAGCACGTAG-AGGGGAACCTGGC
781 CTAAGATCAGACCGAACCAAGGGTTGCGGCAACAGGATCGACAGCACACAGAAGGGG-ACCCGAC
*
19680531 CGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
845 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * *
19680577 GTATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
19680642 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGATGGTTGCGA
66 CATTCCCAGTCTAAG-AT-C-G-G---------A--C------CGGACC-GA--G--GGTTGCGA
* * ** *
19680707 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGTATTTTTCTTCATC-GAGGCACCATCATCG
105 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAG-GGCA-C--CATC-
* * *
19680771 AAGCATCGTCGGAGAACCTGACCGACGGTATTGGGGTTCCGACAATCGGGGGCAT-CGGGGGGGT
165 -AGC--CG-CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG--TGCCGGGGGGT
* *
19680835 GTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCA
224 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
19680900 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCA
289 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
19680965 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTGACAAAATCTTGTGCATTTCGAGTTTT
354 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
19681030 TATCTGAATTTTTTTATGCATGCCAAAAAAAAAACAAGGATCACATATACCAAGTTTGGGGCCAA
419 TAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * ** *
19681095 AACTCTTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATTGTAAAAAATA
484 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
*
19681160 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACA
549 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
19681225 AGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTAT
614 AGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * * *
19681290 CGATTCATGGCTTGCGCATCCCGTCTCTCTGGATGACGCAGTGCCTGCCCGCCCTCCCGCCCGCT
679 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTA--G--TGCCCGCCCGCCC-CTCGCT
* *
19681355 CGTTTCGTCGGTTGGCTTA-GCAATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCAAGG
739 CGTTTCGTCGGTTGGCTTAGGC-ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGG
* * * * *
19681419 GTTGCGGTAACAAGATCGACAGCACGCA-AAGGGGAACCCGATCGATCCCCAGCTTGCGCATCCC
803 GTTGCGGCAACAGGATCGACAGCACACAGAAGGGG-ACCCGACCGATCCCCGGCTTGCGCATCCC
* *
19681483 ACCCCTCTGGCCGGCTGAGCACCC
867 GCCCCTCTGGCCGGCTGAGCGCCC
*
19681507 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAG-ATTGGATCGG
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA-T--A-C-G
* * * ** ** *
19681571 ACCGAGGGTTGTGGTAGTAGGATCAACAGCACGTAA-AGGGGGACCTGGTCGATCCCCGGCTTGC
61 ---GA--G-T-T--CA-T----TC-CCAG-TC-TAAGA-TCGGACC--G--GA-CCGAGGGTTGC
* * * * * **** * * * *
19681635 GCATCCCGCCCCT--TTGGC-C--G-ATTGAGCACCCG-CACGCTCGTTTCGTGGGTTGACTTA-
103 G-A--CAGCACATGCTGGGCTCGGGCA-TGTGCTGGTGCCAC-AT-TTTTC-T---TCG--TCAG
* * ** *** * *** *** * *
19681692 GGCATACAGAGTTCATTCCTAGTCTAAGCAT-A-CGAAATTCATTCCCAG-T-CTAAGATCGGAC
156 GGC--AC-CA--TCA-GCCGCGGAGAA-CCTGACCG-ACGGCATT-GGGGTTCCGACGATCGG--
* * * * * * * * * * ****
19681753 CGG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGCTAGTGCCGTATTTTTCTTC
210 GGGTGCCGGGGGGTG-TGC-GCACATGATGTG--CGATG--GGTGCTGGT-AC-T-TGGCCCTT-
* ** * * * * * * * ** * *** **
19681816 GT-CGGGGCGCC-AT-CGTCGGAGC-ATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAT
265 ATATTGGCCCCCTATCCCTC--ATCAAACCTC-GAGAA-CTCA-C-ACCCCCTTAAAG-AGC-AT
* * ******** * * * * ****
19681877 AATCGGGGGCGCGGGGGGGGGGGTGTGC-ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
322 --T------TGAGATTTTACAGGTTTGCTGC-CA-G-T-AGCCATTAAAG-T-GT-C-T-G----
* * ** * ** **** ** * * *
19681941 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTCACACCCCCTTAAAGAGCATTTGAGAT
366 -AAATGGGGACACT-T---TTTTCAAA--T-G-G---TCACAAAATCTTGTACA-C-TTCGAGTT
** ** * ** * * * * * ***
19682006 TTTA-C--AGGTTTGCT-GGCAGTAG-CAATTAAAGTGTCTGAAATGGAGACACTTTTTTGAA--
417 TTTAGCTGAATTTTTTTATGCA-T-GCCAAAAAAAAT-AC---AA-GGA-TCACGTCTACCAAGT
* * * * * * * **** * * *** * ***
19682064 AT-GGTCACAAAA-T-CTT--G-TACACTTCT----AGTTTTTAGCTG--AATTTTTTTATGCAT
474 TTGGGGC-CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* * ** ** *
19682117 GCCAAGAAAAATACAAGGATCACGTCTACCAAGT-TTGGGGCCA--AAACTCCTTC-CGAAAAAA
538 --CATGAAAAATAGAA--A--ACGAGT--C--GTCTT---GCCATGAAA---CTTCACG-TGAAG
** ** * * ** ** * * * * *
19682178 TTTTGAA-AAATCCCGAACTCTAAAAAGTTTTGA-AAATCGTGAAAAATAGAAAACGAATCGTCT
586 GCTT-AAGGGA--CC--ATTGTATGAA--TTT-ACAAGCCAT-AAAAAT-G-----GCATTGGCA
* * * * * ** ** *** **
19682241 TGCCATGAAACT-TCACG-TGAATGCTTAAGGGA-CCATTGTATGAATTTA-CAAGCCATAAAAA
636 CG-TA-GAAA-TATGAAGATG--TGCCTAA---ACCCA-CCTACCACCCTATC--G--AT--CCA
* * * * * * * ** * *
19682302 TGGCATTG-GCA-CGCAGAAATATAAGATGTGCCTAAACCCACCTACCAC-CCTATCGATCCACG
686 CGGC-TTGCGCATC-CCG---TCT---CTCTGGCT-GACGTA-GTGCC-CGCC---CG--CC-C-
* ** * * * *** ** ** *
19682364 GCTTTCGCATCCCGTCTC-TCTGGCCGACGTAATGCCCGCCCGCCCGTTCATTTTATCGGTTGGC
733 -C--TCGC-T--CGTTTCGTC-GGTTGGC-TTA-G-GCATACG-GAGTTCA--TTCCCAG-T--C
* ** * * ** ** **
19682428 TTAGGCATACGGAGTTC-ATTCCCAGTCTACCATCAGACCAGATCGAGGGTTGTGGCAGTAGGAT
782 -TAAG-AT-C--AGACCGA-ACCAAGGGTTGCGGCA-A-CAG---GA------T--C-----GA-
* * * * * *** * *
19682492 TGGTAGCACATAGAGGGGGACCCAACCGATCCCCGACTTGCGCATCCTTACCCTCTGGTCGGTTG
822 ---CAGCACACAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
19682557 AGCGCCC
884 AGCGCCC
* * * *
19682564 GCACGCTTGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATGCGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * ** *
19682629 CATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCGGTAGCACATGTTGGGCTCGGGCATGTG
66 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
* * * * * * * *
19682694 CTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCTGAGCATCATCGGGGAACCTGATCGGCA
131 CTGGTGCCACATTTTTCTTCGTCAGGGCACCA---TC--AGC--C-GCGGAGAACCTGACCGACG
* * * * *
19682759 GCATTGGGGTTCTGGCGATCGGGGG-GACC-GAGGG-GTGCACACAAGATGTGCGATGGGTGCTG
188 GCATTGGGGTTCCGACGATCGGGGGTG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * * * *
19682821 GTGCTTGGACCATATATTGGCCCCCTATCCGTCATCAAACCTCAAGAACTCACACCCCTTTAAAG
252 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
19682886 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTAAAATGGGGACACTTTT
317 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
19682951 TTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
382 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAA
* * * *
19683016 AAAATACAAGGATGATGTCTACTAAGTTTGGGGCCAAAATTCCTTCC-AAAAAACTTTTAAAAAA
447 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAA
* * *
19683080 TCTCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
511 TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * *
19683145 TCACGTGAAGGCTTAAGAGACCATCGTATGAATTTACAAGCCATAAAAATGGTATTGGCACATAG
576 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
* * * **
19683210 GAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCTTGTCTC
641 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * * * * *
19683275 TCTAGCCGGCGTAGTGCCCGCCTGCCTTTCAGCCCGCTTGTTTCGTCTGTTGGCTTAGGCATATG
706 TCTGGCTGACGTAGTGCCCGCCCGCC---C--CTCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * **** * **
19683340 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAA-GGATGCGGTGGTAGGATCGGCAGCATGC
766 GAGTTCATTCCCAGTCTAAGATCAGACC-GAACCAAGGGTTGCGGCAACAGGATCGACAGCACAC
** * * * * * *
19683404 AGTGGGGGACCCGATCGATCCCCAGCTTGTGCATCCAGCCCCTCTGGGCGGTTGAGCGCCC
830 AGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * **
19683465 GCACGCTCGTTTCGTTGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* ** * *
19683530 CATTCCCAATCTAAGATCGGACCAAACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCAT-TC
66 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGT-
* * *
19683594 GCTGGTGTCGCATTTTTCTTCGTC-GAGGCACCATCACCGGAGCATCGCAGGAGAACTTGACCGA
130 GCTGGTGCCACATTTTTCTTCGTCAG-GGCACCAT---C--AGC--CGC-GGAGAACCTGACCGA
* * * * *
19683658 CGGCATTGGGGTTTCGATGATCGGGGGGGCCGGGCGGTGTGCGCACATGATGTCCGATGGGTGCT
186 CGGCATTGGGGTTCCGACGATCGGGGGTGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
19683723 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAA
251 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
19683788 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTT
316 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * *
19683853 TGTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATATTTTTGTACATGCCAAA
381 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAA
* *
19683918 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAAATTTTAAAAAA
446 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * *
19683983 TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT-GAAAACGAGTCGTCTTGCCATGAAACT
511 TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * * *
19684047 TCACGTGAAGGATTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCACTGGCATGCAA
576 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
* *
19684112 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCGTCTC
641 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
*
19684177 TCTGG-TCGACGTAGTGCCCGCTCG--CC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
706 TCTGGCT-GACGTAGTGCCCGCCCGCCCCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * * * * * *
19684238 TCATTCCCAATCTAAGATCGGACCAAACCGAGGGCTGTGGCAGCAGGATCGATAGCACGCAGAGG
770 TCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAACAGGATCGACAGCACACAGAAG
* * * * * ** * *
19684303 GGGACCCAACCAATCCCCGGCATGCGCATTCCGCCCCTTTCACCGACTGAGCGCCT
835 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * *
19684359 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTATAAGCATACGAAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
** **
19684424 CATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGTAGCACATG-T----T---G---G-G
66 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
* * * * *
19684477 CTGGTGCCATATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATTGCCGGAGAACCTGACCGGCG
131 CTGGTGCCACATTTTTCTTCGTCAGGGCACCAT---C--AGC--CG-CGGAGAACCTGACCGACG
* *
19684542 GCATTGGGGTTCCGACGATCGAGGGG-GTCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTG
188 GCATTGGGGTTCCGACGATCG-GGGGTGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
19684606 GTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAG
252 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
19684671 AGCATTTGATATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
317 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * * * *
19684736 TTCAAA--ATCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTGTTTTGTGCATGCTAACA
382 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAA
**
19684799 AAAATACAAGGATCTTGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
447 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * ** * *
19684864 CTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCCTGCCATGAAACTT
512 CCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
19684929 CACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCACGTAAA
577 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
* * * * * *
19684994 AATAT-AAGATGTGCCTGAACCGACCTACCACCCTATCAATCCATGGCTTACGTATCCCGTCTCT
642 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
** * * * * ** * *
19685058 CTGGCCAACGTAATGCCCGCCCG--CC-CGTTCATTTCATCATTTAGCTTAGGCATATGGAGTTC
707 CTGGCTGACGTAGTGCCCGCCCGCCCCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* ** ** * * ** * * **
19685120 ATTCCCAATCTAAGATTGGACCGGTCCGAGGGTTGCAGCAGTAGGATCGGCAACACGTAG-AGGA
772 ATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAACAGGATCGACAGCACACAGAAGG-
* * * * * *
19685184 GGACCCGATCGATCCCCGG-TATGCGTATCCTGCCCCTCTGGCCGACTGAGCACCT
836 GGACCCGACCGATCCCCGGCT-TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
19685239 GCACGC
1 GCACGC
19685245 ATTTTTCTTC
Statistics
Matches: 6616, Mismatches: 1191, Indels: 858
0.76 0.14 0.10
Matches are distributed among these distances:
879 2 0.00
880 345 0.05
881 89 0.01
882 235 0.04
883 11 0.00
884 201 0.03
885 799 0.12
886 151 0.02
887 57 0.01
888 4 0.00
889 85 0.01
890 384 0.06
891 83 0.01
892 510 0.08
893 13 0.00
894 595 0.09
895 85 0.01
896 40 0.01
897 53 0.01
898 1 0.00
900 6 0.00
901 297 0.04
902 443 0.07
903 310 0.05
904 6 0.00
905 6 0.00
906 2 0.00
908 1 0.00
909 1 0.00
910 55 0.01
911 1 0.00
912 1 0.00
913 4 0.00
916 1 0.00
918 2 0.00
919 1 0.00
921 41 0.01
922 458 0.07
923 5 0.00
924 4 0.00
925 2 0.00
926 9 0.00
927 5 0.00
928 9 0.00
929 8 0.00
930 194 0.03
931 25 0.00
932 14 0.00
933 28 0.00
934 11 0.00
935 8 0.00
936 13 0.00
937 13 0.00
938 10 0.00
939 16 0.00
940 10 0.00
941 2 0.00
942 10 0.00
943 2 0.00
944 4 0.00
945 5 0.00
946 3 0.00
947 4 0.00
948 3 0.00
949 4 0.00
950 3 0.00
951 3 0.00
952 13 0.00
953 8 0.00
954 2 0.00
955 7 0.00
956 1 0.00
957 3 0.00
958 7 0.00
959 5 0.00
960 1 0.00
961 7 0.00
962 6 0.00
963 3 0.00
964 5 0.00
965 8 0.00
966 1 0.00
968 8 0.00
969 7 0.00
970 22 0.00
971 8 0.00
972 2 0.00
973 6 0.00
974 12 0.00
975 15 0.00
976 13 0.00
977 20 0.00
978 28 0.00
979 16 0.00
980 28 0.00
981 23 0.00
982 15 0.00
983 17 0.00
984 10 0.00
985 6 0.00
986 2 0.00
987 8 0.00
988 24 0.00
989 7 0.00
990 8 0.00
992 1 0.00
993 8 0.00
994 7 0.00
995 3 0.00
996 7 0.00
997 7 0.00
999 5 0.00
1000 7 0.00
1001 3 0.00
1002 1 0.00
1003 7 0.00
1004 2 0.00
1005 11 0.00
1006 13 0.00
1007 1 0.00
1008 2 0.00
1009 5 0.00
1010 1 0.00
1011 4 0.00
1012 6 0.00
1014 4 0.00
1015 2 0.00
1016 8 0.00
1017 1 0.00
1018 7 0.00
1019 15 0.00
1020 9 0.00
1021 14 0.00
1022 9 0.00
1023 3 0.00
1024 371 0.06
1025 444 0.07
1026 437 0.07
1027 431 0.07
1028 435 0.07
1029 383 0.06
1030 499 0.08
1031 274 0.04
1032 347 0.05
1033 331 0.05
1034 321 0.05
1035 213 0.03
1036 369 0.06
1037 273 0.04
1038 369 0.06
1039 216 0.03
1040 254 0.04
1041 292 0.04
1042 239 0.04
1043 198 0.03
1044 207 0.03
1045 167 0.03
1046 213 0.03
1047 379 0.06
1048 381 0.06
1049 133 0.02
1050 100 0.02
1051 156 0.02
1052 128 0.02
1053 279 0.04
1054 131 0.02
1055 131 0.02
1056 77 0.01
1057 257 0.04
1058 130 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCACATTTTTCTTCGTCAGGGCACCATCAGCCGCGGAGAACCTGACCGACGGCATTGGG
GTTCCGACGATCGGGGGTGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAA
GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGAC
GTAGTGCCCGCCCGCCCCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCAGACCGAACCAAGGGTTGCGGCAACAGGATCGACAGCACACAGAAGGGGACCCGACC
GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
Found at i:19680640 original size:26 final size:26
Alignment explanation
Indices: 19680604--19680682 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
19680594 GTTGACTTAG
*
19680604 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19680630 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19680656 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19680682 G
1 G
19680683 ATCGGACCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19681634 original size:159 final size:159
Alignment explanation
Indices: 19681345--19681719 Score: 509
Period size: 159 Copynumber: 2.4 Consensus size: 159
19681335 TGCCCGCCCT
* * *
19681345 CCCGCCCGCTCGTTTCGTCGGTTGGCTTA-GCAATACGGAGTTCATTCCCAGTCTAAGATCGGAC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGC-ATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* *
19681409 CGAATCAAGGGTTGCGGTAACAAGATCGACAGCACGCAAAGGGGAACCCGATCGATCCCCAGCTT
65 CGAACCAAGGGTTGCGGTAACAAGATCAACAGCACGCAAAGGGGAACCCGATCGATCCCCAGCTT
*
19681474 GCGCATCCCACCCCTCTGGCCGGCTGAGCA
130 GCGCATCCCACCCCTCTGGCCGACTGAGCA
* * *
19681504 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAGATTGGATC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * ** * * * * * *
19681569 GGACCGAGGGTTGTGGTAGTAGGATCAACAGCACGTAAAGGGGGACCTGGTCGATCCCCGGCTTG
66 GAACCAAGGGTTGCGGTAACAAGATCAACAGCACGCAAAGGGGAACCCGATCGATCCCCAGCTTG
* * *
19681634 CGCATCCCGCCCCTTTGGCCGATTGAGCA
131 CGCATCCCACCCCTCTGGCCGACTGAGCA
* *
19681663 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAG
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
19681720 CATACGAAAT
Statistics
Matches: 189, Mismatches: 26, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
159 187 0.99
160 2 0.01
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.22
Consensus pattern (159 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
GAACCAAGGGTTGCGGTAACAAGATCAACAGCACGCAAAGGGGAACCCGATCGATCCCCAGCTTG
CGCATCCCACCCCTCTGGCCGACTGAGCA
Found at i:19684423 original size:26 final size:26
Alignment explanation
Indices: 19684386--19684438 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19684376 GTTGACTTAG
*
19684386 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGAAGTTCATTCCCAGTATAA
*
19684412 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTATAA
19684438 G
1 G
19684439 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTATAA
Found at i:19686914 original size:26 final size:26
Alignment explanation
Indices: 19686885--19686937 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19686875 GTTGACTTAG
* *
19686885 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCAAGTCTAA
19686911 GCATACGGAGTTAATTCCAAGTCTAA
1 GCATACGGAGTTAATTCCAAGTCTAA
19686937 G
1 G
19686938 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCAAGTCTAA
Found at i:19687037 original size:889 final size:856
Alignment explanation
Indices: 19685282--19688558 Score: 3681
Period size: 887 Copynumber: 3.7 Consensus size: 856
19685272 GGAGCATCGT
* ** ** **
19685282 CGGAGAACCTCACCGATGGCATTAAGGTTCCGACGATCGGGGGGCCGGAGGGGGTGTTAGCACAT
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-G-GGGGGTGTGCGCACAT
* *
19685347 GATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCAAGA
64 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* * *
19685412 ACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTC
129 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTC
* * * *
19685477 TGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACCCTTAGAGTTTTTAGCTGAATT
194 TGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
** * *
19685542 TTTTGGTGCATGCCAACAAAAATACTAGGATCACGTGTACCAAGTTTGGGGCCAAAACTCCTTCC
259 TTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * ** ** * *
19685607 GACATAATTTTAAAATATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGT
324 AAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
19685672 TGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAA
389 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*** * * *
19685737 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAAGCA-CCTATCAATCCACGG
454 ATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * **
19685801 CTTGTGCATCCCGTCTCTGGCCGGCGTA-GTGCCCGCCCGCCCGCCCGACCGCTTGTTTCGTCGG
519 CTTGCGCATCCCGTCTCT--CTGGCG-ACGT---AG--CGCCCGCCCGTCCGCTCATTTCGTCGG
* * ** *
19685865 TTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATTGGACCAGACTGAGGGTTACGACAGCA
576 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCA
* ** * * *** * * * *
19685930 TGCAGA-GGGGGACCTGGTC-GATCCCCGG-CTTGCGCATCTCACCCCACTGGCCGGTTTAACGC
641 ---AGATCGGCAACAT--ACAGA--GGGGGAC--CCGCATC-GATCCCACT-G--GG----ATG-
* * * * *
19685992 CCACACGCTCGTTTCGCGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCAAAGCATACGGAG
688 ---CATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * *
19686057 TTCATTCCCAGTCTAAGATTGGATTGGATCGAGGGTTGGGGCAGCACATGTTGGGCTCGGGCATG
750 TTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGACAGCACATGCTGGGCTTGGGCATG
* ** *
19686122 TGCTGCTGCCGCATTTTTCTTC--GTCGGGGTGCCATCGCCGGAGAATCA
815 TGCTGGTGCCGCATTTTTCTTCTTGTC-TCGAG-CATCG-C---G--TCA
* *
19686170 CCGGAGAACCTAACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACA
1 -CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACA
*
19686235 TGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
63 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
*
19686300 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGT
128 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGT
*
19686365 CTAAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
193 CTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-
* * * * **
19686430 TTTTTTTATGCAAGCCAAAAAAAATACAAGGATCATGTCCACCAAACTTGGGGCCAAAACTCCTT
257 TTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
** * * *
19686495 TAAAAAAAATTTTAAAAAATCCCGAACTACAAAAAGTTTCAAAAATCATGAGAAATTGAAAACGA
322 CCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* *
19686560 GTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAA
387 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
*
19686625 AAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCAC
452 AAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * *
19686690 TGCTTGCGCATCCCGTCTCTCTGGACGACGTGGTGCCCGCCCGTCCGCTCGTTTCCTCGATTGGC
517 GGCTTGCGCATCCCGTCTCTCTGG-CGACGTAGCGCCCGCCCGTCCGCTCATTTCGTCGGTTGGC
* * *
19686755 TTAGGCATATGGAGTTCATTCCCAGTCTAGGATCAGACCAGACCGAGGGTTACGGCAGCAAGATC
581 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGATC
* *
19686820 GACAACATACAGAGGGGGACCCG-ATCGATCCC-C-GGGATGCATGCTAGTTTCGTGGGTTGACT
646 GGCAACATACAGAGGGGGACCCGCATCGATCCCACTGGGATGCATGCTCGTTTCGTGGGTTGACT
* * *
19686882 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTAATTCCAAGTCTAAGATTGGATCA
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCG
* *
19686947 GAACGAGGGTTGCGCCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTG
776 GATCGAGGGTTGCGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTC-TT-
* * * * * *
19687012 GGGCACCATCATCGGAGCATCGT
839 -GTCTCGAGCATC---GCGTC-A
* *
19687035 CGGAGAACCTGACCGGCGGCATTGGTGTTCTGACGAT--------CGGGGGGTGTGCGCACATGA
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGA
*
19687092 TGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
*
19687157 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG
** * *
19687222 AAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGCTTTTAGCTGAATTTT
196 AAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
19687287 TTTAAGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAACTCCTTCCGA
261 TTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* ** * *
19687352 AAAAATTTTTAAAAATCTGGAACCCCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCG
326 AAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
19687417 TCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAACAAT
391 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
19687482 GGCATTGGCACATATAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCT
456 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
19687547 TGCGCATCCCGTCTTTCTGGTCGGCGTAGTACCCGCCCGCCCACCCGCCCGTTCATTTCGTCGGT
521 TGCGCATCCCGTCTCTCTGG-CGACGTAG----CGCCCG----CCCGTCCGCTCATTTCGTCGGT
* * * * * *
19687612 TGGCTTCGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTTGCAACAGCAG
577 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAA
* * *
19687677 GATCGGCAACACGTAGAG-GGGGACTCAGTCTATCCCCAGCTTGCGCATCTCGCCCCTCTGGTCG
642 GATCGGCAACA--TACAGAGGGG-----G---A--CCC-GCAT-CG-A--T---CCCACTGG--G
* * *
19687741 ACTGAGCACCCGTACGCTCGTTCCGTGGGTTGACTTAGGCATA-GGCGTTCATTCCCTGTCTAAG
685 A-T--GCA----T--GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* *
19687805 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCA-ATGCTGGGC
741 CATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGACAGCACATGCTGGGC
*
19687869 TTGGGCATGTGCTGGTGCCACATTTTTCTTC--G-C-CAGAGCATCGC--CA
806 TTGGGCATGTGCTGGTGCCGCATTTTTCTTCTTGTCTC-GAGCATCGCGTCA
* *
19687915 --GAGAACCTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATG
* *
19687978 ATGTACGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
* *
19688043 CTCACACCCCTTTAAAGAGCATTTG-GCATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTC
130 CTCACACCCCCTTAAAGAGCATTTGAG-ATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTC
* * *
19688107 TGTAATGGGGACA-CTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTAAAT
194 TGAAATGGGGACACCTTTTT-CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * **
19688171 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAAATTATTC
258 TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* ** * * * * *
19688236 CAACAATTTTTTTAAAAATTCCGAACCTTC-AAAAGATTCAAAAATCACGAAAAATAGAAAACGA
323 CAAAAAAATTTTAAAAAATCCCGAACC-ACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* * *
19688300 GTCATCCTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-A
387 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
*
19688364 AAATGGGCATTGGCATGC-T-GAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATC
452 AAAT-GGCATTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* *
19688427 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGCGCCCGCCCGCCCTCCTGCTCATTTCATC
514 CACGGCTTGCGCATCCCGTCTCTCTGG-CGACGTAGCGCCCGCCCG---TCC-GCTCATTTCGTC
* ** * *
19688492 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGATCGAGGGTTACGATAG
574 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAG
19688557 CA
639 CA
19688559 CATGCTGGGC
Statistics
Matches: 2066, Mismatches: 243, Indels: 164
0.84 0.10 0.07
Matches are distributed among these distances:
853 262 0.13
854 201 0.10
855 1 0.00
857 5 0.00
861 83 0.04
862 4 0.00
863 4 0.00
864 168 0.08
867 5 0.00
868 2 0.00
869 3 0.00
870 2 0.00
872 5 0.00
873 1 0.00
874 2 0.00
875 2 0.00
876 2 0.00
877 4 0.00
878 35 0.02
879 6 0.00
880 2 0.00
881 6 0.00
882 8 0.00
883 81 0.04
885 84 0.04
886 17 0.01
887 445 0.22
888 5 0.00
889 232 0.11
890 227 0.11
891 29 0.01
892 40 0.02
893 67 0.03
894 26 0.01
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (856 bp):
CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
AAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGTCTCTCTGGCGACGTAGCGCCCGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGATCGGCAA
CATACAGAGGGGGACCCGCATCGATCCCACTGGGATGCATGCTCGTTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCG
AGGGTTGCGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCTTGTCTCGA
GCATCGCGTCA
Found at i:19687808 original size:25 final size:26
Alignment explanation
Indices: 19687779--19687830 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19687769 GTTGACTTAG
* *
19687779 GCATA-GGCGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19687804 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19687830 G
1 G
19687831 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19689378 original size:26 final size:26
Alignment explanation
Indices: 19689349--19689401 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19689339 GTTGACTTAG
*
19689349 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
**
19689375 GCATAGGGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
19689401 G
1 G
19689402 ATCGGTCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:19691024 original size:26 final size:26
Alignment explanation
Indices: 19690994--19691046 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19690984 GTTGACTCAT
19690994 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19691020 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19691046 G
1 G
19691047 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19691923 original size:26 final size:26
Alignment explanation
Indices: 19691894--19691967 Score: 121
Period size: 26 Copynumber: 2.8 Consensus size: 26
19691884 GTTGACTTAG
* *
19691894 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19691920 GCATACATAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19691946 GCATACAGAGTTCATTCCCAGT
1 GCATACAGAGTTCATTCCCAGT
19691968 GCATGCCAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19692488 original size:26 final size:26
Alignment explanation
Indices: 19692452--19692504 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19692442 GTTGACTTAG
19692452 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19692478 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19692504 G
1 G
19692505 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19692709 original size:12 final size:12
Alignment explanation
Indices: 19692688--19692717 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
19692678 GTGCTGGTAC
19692688 TTGG-CCTTATA
1 TTGGCCCTTATA
19692699 TTGGCCCTTATA
1 TTGGCCCTTATA
19692711 TTGGCCC
1 TTGGCCC
19692718 CCTATCCCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.22
12 14 0.78
ACGTcount: A:0.13, C:0.27, G:0.20, T:0.40
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:19693397 original size:26 final size:26
Alignment explanation
Indices: 19693368--19693419 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19693358 TGACTTAGGC
*
19693368 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAATCTAAGA
19693394 ATACGGAGTTCATTCCCAATCTAAGA
1 ATACGGAGTTCATTCCCAATCTAAGA
19693420 TTGAACCGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGA
Found at i:19693539 original size:184 final size:185
Alignment explanation
Indices: 19693209--19693577 Score: 492
Period size: 184 Copynumber: 2.0 Consensus size: 185
19693199 TGGCTTAGGC
* * * * ** *
19693209 ATACGGAGTTCATTCCTAGTCTAAGATTGGATAGAACTGAGGGTTACAATAGCAGGATCGACAGC
1 ATACGGAGTTCATTCCCAATCTAAGATTGAACAGAACCAAGGGTTACAATAGCAGGATAGACAGC
* * * *
19693274 ACGTAGAGAGGGACCCAGCCTATCCTCGACTTGTGCATCCCACCCCTCTGGCCTGCTGAGTGCCC
66 ACGCAGAGAGGGACCCAGCCGATCCTCGACTTGTGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
* *
19693339 GCACGGTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
131 GCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
19693394 ATACGGAGTTCATTCCCAATCTAAGATTGAACCGGACCAAGGGTTACGAA-AGTAGGATAGACAG
1 ATACGGAGTTCATTCCCAATCTAAGATTGAACAGAACCAAGGGTTAC-AATAGCAGGATAGACAG
* * * * * * *
19693458 CATGCAGAG-GGGACCCGGCCGAT-CTCCGGCTTGTGCATGCCGCCCCTCTGGCGGGCTGAGCGT
65 CACGCAGAGAGGGACCCAGCCGATCCT-CGACTTGTGCATCCCACCCCTCTGGCCGGCTGAGCGC
19693521 CCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
129 CCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
19693578 TCGGATTGGA
Statistics
Matches: 159, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
183 2 0.01
184 97 0.61
185 58 0.36
186 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.24
Consensus pattern (185 bp):
ATACGGAGTTCATTCCCAATCTAAGATTGAACAGAACCAAGGGTTACAATAGCAGGATAGACAGC
ACGCAGAGAGGGACCCAGCCGATCCTCGACTTGTGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
Found at i:19694472 original size:26 final size:26
Alignment explanation
Indices: 19694436--19694485 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
19694426 GACTTAGGTG
19694436 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
19694462 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
19694486 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:19695345 original size:26 final size:26
Alignment explanation
Indices: 19695309--19695361 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19695299 GTTGACTTAG
19695309 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19695335 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19695361 G
1 G
19695362 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19695989 original size:26 final size:26
Alignment explanation
Indices: 19695959--19696011 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19695949 GTTGACTTAG
*
19695959 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGAAGTTCATTCCCAGTATAA
*
19695985 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTATAA
19696011 G
1 G
19696012 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTATAA
Found at i:19699974 original size:26 final size:26
Alignment explanation
Indices: 19699938--19699988 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19699928 TTGGCTTATT
19699938 CATACGAAGTTCATTCCCAGTCTAAA
1 CATACGAAGTTCATTCCCAGTCTAAA
*
19699964 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
19699989 GATTGAACCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAA
Found at i:19700871 original size:26 final size:26
Alignment explanation
Indices: 19700841--19700893 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19700831 GTTGACTCAT
*
19700841 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19700867 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19700893 G
1 G
19700894 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19701777 original size:26 final size:26
Alignment explanation
Indices: 19701740--19701813 Score: 130
Period size: 26 Copynumber: 2.8 Consensus size: 26
19701730 GTTGACTTAG
*
19701740 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19701766 GCATACATAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19701792 GCATACAGAGTTCATTCCCAGT
1 GCATACAGAGTTCATTCCCAGT
19701814 GCATGCCAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19702334 original size:26 final size:26
Alignment explanation
Indices: 19702298--19702350 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19702288 GTTGACTTAG
19702298 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19702324 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19702350 G
1 G
19702351 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19703385 original size:184 final size:185
Alignment explanation
Indices: 19703044--19703439 Score: 501
Period size: 184 Copynumber: 2.1 Consensus size: 185
19703034 TGGCTTAGGC
* * ** * *
19703044 ATACGGAGTTCATTCCTAGTCTAAGATTGGACAGAACTGAGGGTTACAATAGCAGGATTGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATTGAACAGAACCAAGGGTTACAATAGCAGGATAGACAAC
* *
19703109 ACGTAGAGAGGGACCCGGCCTATCCTCGACTTACGCATCCCGCCCCTCTGGCCTGCTGAGCGCCC
66 ACGTAGAGAGGGACCCGGCCGATCCTCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * *
19703174 GCGCGGTCGTTTCGTGGGTTCACTTAGGCATATGGAGTTCATTCCCAGTCTAAGA
131 GCACGGTCATTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * *
19703229 ATACGGAGTTCATTCCCAATCTAAGATTGAACCGGACCAAGGGTTACGAA-AGTAGGATAGACAA
1 ATACGGAGTTCATTCCCAGTCTAAGATTGAACAGAACCAAGGGTTAC-AATAGCAGGATAGACAA
* * ** * ** *
19703293 CATGTAGAG-GGGACCCGGCCGAT-CTCCGGCTTGTGCATGCCGCCCCTCTGGTGGGCTGAGTGC
65 CACGTAGAGAGGGACCCGGCCGATCCT-CGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
19703356 CCGCACGTTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
129 CCGCACGGTCATTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
*
19703413 ATACGGAGTTCACTCCCAGTCTAAGAT
1 ATACGGAGTTCATTCCCAGTCTAAGAT
19703440 CAGATCAGAC
Statistics
Matches: 180, Mismatches: 29, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
183 2 0.01
184 117 0.65
185 59 0.33
186 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (185 bp):
ATACGGAGTTCATTCCCAGTCTAAGATTGAACAGAACCAAGGGTTACAATAGCAGGATAGACAAC
ACGTAGAGAGGGACCCGGCCGATCCTCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGGTCATTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
Found at i:19703421 original size:26 final size:26
Alignment explanation
Indices: 19703385--19703437 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19703375 GTTGACTTAG
*
19703385 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
19703411 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
19703437 G
1 G
19703438 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:19704333 original size:26 final size:26
Alignment explanation
Indices: 19704297--19704346 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
19704287 GACTTAGGCG
19704297 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
19704323 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
19704347 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:19705837 original size:26 final size:27
Alignment explanation
Indices: 19705802--19705855 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
19705792 TTTGACTTAG
19705802 GCATAACGAAGTTCATTCCCAGTATAA
1 GCATAACGAAGTTCATTCCCAGTATAA
*
19705829 GCAT-ACGAAGTTCATTCCCAGTCTAA
1 GCATAACGAAGTTCATTCCCAGTATAA
19705855 G
1 G
19705856 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (27 bp):
GCATAACGAAGTTCATTCCCAGTATAA
Found at i:19709823 original size:26 final size:26
Alignment explanation
Indices: 19709787--19709837 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19709777 TTGGCTTATT
19709787 CATACGAAGTTCATTCCCAGTCTAAA
1 CATACGAAGTTCATTCCCAGTCTAAA
*
19709813 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
19709838 GATTGAACCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAA
Found at i:19710712 original size:26 final size:26
Alignment explanation
Indices: 19710682--19710734 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19710672 GTTGACTCAT
*
19710682 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19710708 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19710734 G
1 G
19710735 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19711609 original size:26 final size:26
Alignment explanation
Indices: 19711571--19711645 Score: 132
Period size: 26 Copynumber: 2.9 Consensus size: 26
19711561 GGGTTGACTT
*
19711571 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACAGAGTTCATTCCCAGTCTA
*
19711597 AGCATACATAGTTCATTCCCAGTCTA
1 AGCATACAGAGTTCATTCCCAGTCTA
19711623 AGCATACAGAGTTCATTCCCAGT
1 AGCATACAGAGTTCATTCCCAGT
19711646 GCATGCCAAC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (26 bp):
AGCATACAGAGTTCATTCCCAGTCTA
Found at i:19712155 original size:26 final size:26
Alignment explanation
Indices: 19712119--19712171 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19712109 GTTGACTTAG
19712119 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19712145 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19712171 G
1 G
19712172 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19714105 original size:26 final size:26
Alignment explanation
Indices: 19714069--19714118 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
19714059 GACTTAGGCG
19714069 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
19714095 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
19714119 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:19715595 original size:26 final size:26
Alignment explanation
Indices: 19715565--19715617 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19715555 GTTGACTTAG
19715565 GCATACGAAGTTCATTCCCAGTATAA
1 GCATACGAAGTTCATTCCCAGTATAA
*
19715591 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTATAA
19715617 G
1 G
19715618 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTATAA
Found at i:19717224 original size:26 final size:26
Alignment explanation
Indices: 19717188--19717240 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19717178 GTTGACTTAG
*
19717188 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19717214 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19717240 G
1 G
19717241 ATCTGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19717729 original size:284 final size:286
Alignment explanation
Indices: 19717217--19717737 Score: 707
Period size: 284 Copynumber: 1.8 Consensus size: 286
19717207 AGTCTAAGCA
* * * * *
19717217 TACGGAGTTCATTCTCAATCTAAGATCTGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTT
1 TACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTAGGCTT
* *
19717282 GGGCATGTGCTGGTGTAGCATTTTTCTTCGTCGGGGCAGCATCGCCAGAGCATCGCAGGAGAACC
66 GGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCAGGAGAACC
* * *
19717347 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGTTATGCGCACATGATTGCGATG
131 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGCCCGAGGGGGTATGCGCACATGATTACGATG
** * *
19717412 GGTGCTGGTACTTGGCCCTTTTTCTGGCCCCCTATCCCTCATAGTGCCTGCCCGCCCGTCCGCCC
196 GGTGCTCATACTTGGCACTTTATCTGGCCCCCTATCCCTCATAGTGCCTGCCCGCCCGTCCGCCC
19717477 GTTCGTTTCATCGGTTGGCTTAGGCT
261 GTTCGTTTCATCGGTTGGCTTAGGCT
* *
19717503 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGTTACGATAGCACATGCTAGGCTC
1 TACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTAGGCT-
* * * * ** *
19717567 T-GGCATGTGTTGGTGCCGCATTTTTCTTTGTC-GGGCACCATTGCTGGAGCATCGTTA-GAGAA
65 TGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCG-CAGGAGAA
* *
19717629 CCTGACC-AGCGGCATTGGGGTTCCGATGATCGGGGGCCCG-GGGGGTGTGCGCACATGATGTAC
129 CCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGCCCGAGGGGGTATGCGCACATGAT-TAC
19717692 GGA-GGGTGCTCATACTTGGCACTTATAT-TGGCCCCCTATCCCTCAT
192 -GATGGGTGCTCATACTTGGCACTT-TATCTGGCCCCCTATCCCTCAT
19717738 CAAACCTCGA
Statistics
Matches: 204, Mismatches: 25, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
283 18 0.09
284 97 0.48
285 53 0.26
286 36 0.18
ACGTcount: A:0.17, C:0.26, G:0.31, T:0.26
Consensus pattern (286 bp):
TACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTAGGCTT
GGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCAGGAGAACC
TGACCGACGGCATTGGGGTTCCGACGATCGGGGGCCCGAGGGGGTATGCGCACATGATTACGATG
GGTGCTCATACTTGGCACTTTATCTGGCCCCCTATCCCTCATAGTGCCTGCCCGCCCGTCCGCCC
GTTCGTTTCATCGGTTGGCTTAGGCT
Found at i:19718406 original size:26 final size:26
Alignment explanation
Indices: 19718376--19718425 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
19718366 GACTTAGGCA
19718376 TACGGAGTTCATTCCCAGTCTAAGTG
1 TACGGAGTTCATTCCCAGTCTAAGTG
19718402 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
19718426 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGTG
Found at i:19719300 original size:26 final size:26
Alignment explanation
Indices: 19719261--19719313 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19719251 ATTGACTTAG
*
19719261 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
19719287 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
19719313 G
1 G
19719314 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:19719345 original size:888 final size:886
Alignment explanation
Indices: 19717503--19722749 Score: 5833
Period size: 888 Copynumber: 5.8 Consensus size: 886
19717493 GGCTTAGGCT
* *
19717503 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGTTACGATAGCACATGCTAGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTC
* * **
19717567 TGGCATGTGTTGGTGCCGCATTTTTCTTTGTCGGGCACCATTGCTGGAGCATCG-TTAGAGAACC
66 AGGCATGTGCTGGTGCCGCATTTTTC--T-T---G--CCA-T-C-GGAGCATCGCCGA-AGAACC
* * *
19717631 TGACC-AGCGGCATTGGGGTTCCGATGATC-GGGGGCCCGGGGGGTGTGCGCACATGATGTACGG
119 TGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC-G
** * *
19717694 A-GGGTGCTCATACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAA
182 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * * *
19717758 CCCCTTAAAGAGCATTTGAGAATTTACAGGTTTGCTGTCGGTAGCCTTTAAAGTGTCTCAAATGG
247 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
19717823 GGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
312 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
19717888 CATGCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
377 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * *
19717953 TTAAAAAAATCTCGAACCATAAAAATTTTAAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGC
442 TTTAAAAAATCCCGAACCGTAAAAATTTT-GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
19718018 GATGAAACTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
506 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * **
19718083 GGCACGTAGAAAGATAAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCATA
571 GGCACATAGAAATATGAAGATGTGCCTAAAC-CACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * *
19718148 TCCCGTCTCTCTAGTCGGCGTAGTGCCCACCCGCCCGTCCGCCGGCTCGTTTCGTCTGTTGGCTT
635 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCG-ACGCC-GCTCGTTTCATCGGTTGGCTT
* * * * **
19718213 AGGCATGCGAAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTGCGGTAGCAAAATCGG
698 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGG
* * * * * * *
19718278 CAGCATGTAGAGGGGGACCTGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CGGCTGAGC
763 CAGCACGCAGA-GGGGACCCGATCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGTTGAGC
* * ** **
19718342 GCCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTG
827 GCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * *
19718402 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTC
* * *
19718467 GGGCATGTGCTGGTGACGCATTTTTCTT-CCA-CGGAGCATCGCCGAAGAACCTGACCGACGACA
66 AGGCATGTGCTGGTGCCGCATTTTTCTTGCCATCGGAGCATCGCCGAAGAACCTGACCGACGGCA
* * * *
19718530 TTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTACTCACAGGATGTGCGATGGGTGCTGGTAC
131 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * * *
19718595 TTGGCCCTTATATTGGCCTCTTATCCCTAATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
196 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
19718660 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
261 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
19718725 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACCAAAA
326 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
** *
19718790 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAATCCCA
391 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
*
19718855 AACCGTAAAAATTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
456 AACCGTAAAAATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * * *
19718920 GAAGGCTTAAGGGACCATTGTTTTAATTTACAAGCCATAAAAATGGTATTGGCACACAGAAATAT
521 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATAT
* * * * *
19718985 GAAGATGTACCTAAACCAACCTACCACTCTATCGATCCATGGCTTGCGTATCCCATCTCTCTGGC
586 GAAGATGTGCCTAAACC-ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * *
19719050 CGGCGTAGTGCCCGCCTGCCCGACTGTCCGCTCGTTTCTTCGGTTGGCTTAGGCATATGGAGTTA
650 CGGCGTAGTGCCCGCCTGCCCGAC-G-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * *
19719115 ATTCCCAATTTAAGATCAGA-CTGGATCGAGGGTTGCAGCAGTAGGATTGGCAGCATGCAAAGAG
713 ATTCCCAGTCTAAGATCAGATC-GGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG-G
* * * * *
19719179 GAACCCGATCGATCCCCGACTTATGCATCCCGCCCCTCTGGTCGGTTGAGCGCCTGCACACTCAT
776 GGACCCGATCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCAT
*
19719244 TTTGTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
841 TTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * **
19719290 TACGGAATTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTACGGTAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTC
* * * * *
19719355 AGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCGTCGGAGCGTCACCGGAGAACT
66 AGGCATGTGCTGGTGCCGCATTTTTC-T--T----G--CCA---TCGGAGCATCGCCGAAGAACC
* * * * * * *
19719420 TGACCGACGGTATTGGGGTTTCGAAGATCGGGGGGGTCGGGGGAGGTGTACGCACATGATATGCA
119 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CCGGGG-GGTGTGCGCACATGATGTGCG
* *
19719485 ATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
182 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
19719550 CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGG
247 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
19719615 GGACACTTTTTTCAAATGGCCACAAAATCTCGTACACATCGAGTTTTTAGCTGAATTTTTTTGTG
312 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
** ** *
19719680 TGTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGTCCCAAAACACCTTCCGAAAAAA-
377 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
*
19719744 GTT------T-------C--AAAAA--TT----A---TGAAAAATAGAAAACGAGTCGTCTTGCC
442 TTTAAAAAATCCCGAACCGTAAAAATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
19719785 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTG
507 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* **
19719850 GCACGTAGAGAA-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCTTGGCTTGCGCA
572 GCACATAGA-AATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
19719914 TCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCC-AC-CCGCTCATTTC-GCAGTTGGCTTAG
635 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGACGCCGCTCGTTTCATCGGTTGGCTTAG
* * * * **
19719972 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCTGTAGTAGGATCGATA
700 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
19720037 ACACGCAGAGGTGGACCCGATCGATCCCCGACTTGCGCGTCCCGCCCTTCTGGCCGGCTGAGCGC
765 GCACGCAGAGG-GGACCCGATCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCGC
*
19720102 CTGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
829 CCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * *
19720160 TACGGAGTTCATTCCCAGTGTAAGATCGAACTAGACCGAGGGTTGCGACAGCACATGTTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTC
* * * *
19720225 AGGCATGTGCTGGTGCCACATTTTTCTTCGCCCGAGCACCATCGCCAGAGCATCACCGGAGAAAC
66 AGGCATGTGCTGGTGCCGCATTTTTCTT-------G--CCATCG---GAGCATCGCCGAAGAACC
* * * * * *
19720290 TGACCGACGGCATTGGCGTTTCGGCGATC-GGGGGGTCGGGGGGTGCGTGCACATGATGTGCGAT
119 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* *
19720354 GGGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
184 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
19720419 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGTG
249 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
19720484 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCA
314 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
19720549 TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTT
379 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* *
19720614 TAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
444 TAAAAAATCCCGAACCGTAAAAA-TTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
19720679 CGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
508 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
19720744 CACATAGAAATATGAAGATGTGCCTTAAGTCCACCTAACACTCTATCGATCCATGACTTGCGCAT
573 CACATAGAAATATGAAGATGTGCC-TAA-ACCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * ** * * * **
19720809 CCCATCTCTCTGGTCGGCATAGTG-CCTACT-CGC-ATGTCCGTTCGTTTTGTCGGTTGGCTTAG
636 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGACG-CCGCTCGTTTCATCGGTTGGCTTAG
* ** * * * * * * **
19720871 GCGTAC-GAGGTTCATTCCCAGTCTAAGATTGGATCGGACCAATGTTTACGACAGCAGGATCGAT
700 GCATACGGA-GTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGGC
* * ** ** * * * * *
19720935 AGTACGTAGAGGGGGACTAGGCCGATCCCCGGCTTATGCATCCCACCCCTTTGGCCGGTTGAGCA
764 AGCACGCAGA-GGGGACCCGATCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCG
* *
19721000 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCA
828 CCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * **
19721059 TACGGAGTTCATTCCCAATATAAGATCAGACCAGACCGACGGTTACGATGGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTC
* * *** *
19721124 AGGCATGTGCAGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCATTGGAGAACC
66 AGGCATGTGCTGGTGCCGCATTTTTCTT-------G--CCA---TCGGAGCATCGCCGAAGAACC
* * * *
19721189 TGACCTG-CGGCATTGAGGTTTCGATGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
119 TGACC-GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
19721253 TGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACC
183 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
19721318 CCCTTAAAGTGCAATTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
248 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
19721383 GACACTTTTTTCCAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGC
313 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
19721448 ATACCAA-AAAAATACAAGGATCATGT-TACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATT
378 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * *
19721511 TT-AAAAATCTCGAACCGCAAAGAGTTTTTG-AAATCGTGAAAAATAAAAAACGAGTCGTCTTGC
443 TTAAAAAATCCCGAACCGTAAA-A-ATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
** * *
19721574 CATGAAACTTCATATGAAGGCTTAAGGGACAATTGTATGAATTTAACCCAAGCC--AAAAATGGT
506 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT-A--CAAGCCATAAAAATGGC
* * * *
19721637 GTTGGCACACA-AAATAGTAAAGATGGTGCCTAAACGCACCTA-CACACCTACTTGACTCCACGG
568 ATTGGCACATAGAAATA-TGAAGAT-GTGCCTAAAC-CACCTACCAC-CCTA-TCGA-TCCACGG
* * * * ** *
19721700 CTTGCGC-TCCCGTCTCTCTGGTCGGC-AAGGTGCGCGCGTTACCG-C-CCACTCGTTTCATCGG
627 CTTGCGCATCCCGTCTCTCTGGCCGGCGTA-GTGCCCGCCTGCCCGACGCCGCTCGTTTCATCGG
* * * *** *
19721761 ATT-GCTTCGGCATAAGAGTTATTTCTAAGAAAGTTCCCCCCCCTTAAAGATTTCAGATTTTGGA
691 -TTGGCTTAGGCATACG-G--AGTTC------A-TT-CCCAGTC-T-AAGA--TCAGA--TCGGA
* * * * * * * *
19721825 -CTAAGGGTTGCGGCAGGCAAG-TCGGTAAG-ACGCAAAGGCGACACCCGGAACCGA-CCTCGAG
738 TC-GAGGGTTGCGGCA-GCAGGATCGG-CAGCACGCAGAGG-G-GACCC-G-ATCGATCCCCGAC
* * * *
19721886 TTGTGCATCCCACCCCTCTGGCCGGTTGAACGCCCGTACGCTCGTTTT-TCGGGTTGACTTAGGC
796 TTGTGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTTGT-GGGTTGACTTAGGC
* *
19721950 ATACAGAGTTCATTCACAGTCTAAGCA
860 ATACGGAGTTCATTCCCAGTCTAAGCA
* * * * *
19721977 TACGGAGTTCATTCCTAGCCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTC
* * * * *
19722042 GGGCATGTGCTGGCGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
66 AGGCATGTGCTGGTGCCGCATTTTTC-T--T----G--CCA---TCGGAGCATCGCCGAAGAACC
* * * * *
19722107 TGATCGATGGCATTGGGGTTCTGGCGATCGAGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCG
119 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCG
*
19722172 ATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
182 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
19722237 CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTTTGAAATGG
247 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
19722302 TGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTTGT
312 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGT
** *
19722367 GCA-GCCAACGGAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT-CGAAAAAA
376 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAA
* *
19722430 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
440 ATTTTAAAAAATCCCGAACCGTAAAAA-TTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
19722495 GCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCA
504 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
19722560 TTGGCACGTAGAAAGATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTGCG
569 TTGGCACATAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
19722625 CATCCCGTCTCTTTGGCTGACGTAGTGCCCCCCCGCCCGCCCGCCCGTTCGCTTGTTTCATCGGT
633 CATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCTGCCCG-ACG-CCGCTCGTTTCATCGGT
* * * *
19722690 TGGCTTAAGCATACGGAGTTCATTCGCAATCTAAGATCAGATCGGACCGAGGGTTGCGGC
692 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGC
19722750 GGCACGCAGA
Statistics
Matches: 3722, Mismatches: 475, Indels: 290
0.83 0.11 0.06
Matches are distributed among these distances:
867 257 0.07
868 6 0.00
869 8 0.00
870 299 0.08
871 11 0.00
874 3 0.00
875 4 0.00
876 2 0.00
877 1 0.00
879 166 0.04
880 4 0.00
881 1 0.00
882 1 0.00
883 5 0.00
886 8 0.00
887 336 0.09
888 438 0.12
889 1 0.00
890 2 0.00
891 4 0.00
892 2 0.00
893 110 0.03
894 55 0.01
895 1 0.00
896 4 0.00
897 97 0.03
898 92 0.02
899 396 0.11
900 289 0.08
901 2 0.00
902 54 0.01
903 7 0.00
904 258 0.07
908 1 0.00
909 2 0.00
910 4 0.00
911 16 0.00
912 5 0.00
913 5 0.00
914 3 0.00
915 7 0.00
916 23 0.01
917 13 0.00
918 222 0.06
919 20 0.01
920 228 0.06
921 49 0.01
922 67 0.02
923 95 0.03
924 7 0.00
925 4 0.00
926 1 0.00
927 3 0.00
928 23 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTC
AGGCATGTGCTGGTGCCGCATTTTTCTTGCCATCGGAGCATCGCCGAAGAACCTGACCGACGGCA
TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
AACCGTAAAAATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATAT
GAAGATGTGCCTAAACCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
GGCGTAGTGCCCGCCTGCCCGACGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGACC
CGATCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTTGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
Found at i:19720167 original size:26 final size:26
Alignment explanation
Indices: 19720131--19720183 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19720121 GTTGACTTAG
19720131 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19720157 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19720183 G
1 G
19720184 ATCGAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19721082 original size:26 final size:26
Alignment explanation
Indices: 19721030--19721082 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19721020 GTTGACTTAG
* * *
19721030 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATATAA
19721056 GCATACGGAGTTCATTCCCAATATAA
1 GCATACGGAGTTCATTCCCAATATAA
19721082 G
1 G
19721083 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATATAA
Found at i:19721999 original size:26 final size:26
Alignment explanation
Indices: 19721948--19722000 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19721938 GTTGACTTAG
*
19721948 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGCCTAA
*
19721974 GCATACGGAGTTCATTC-CTAGCCTAA
1 GCATACAGAGTTCATTCAC-AGCCTAA
19722000 G
1 G
19722001 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGCCTAA
Found at i:19722849 original size:26 final size:26
Alignment explanation
Indices: 19722819--19722871 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19722809 GTTGACTTAG
*
19722819 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
19722845 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19722871 G
1 G
19722872 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19726062 original size:26 final size:26
Alignment explanation
Indices: 19726026--19726079 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
19726016 GTTGCCTTAG
19726026 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19726052 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19726078 GC
1 GC
19726080 TCATATCAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19726967 original size:26 final size:26
Alignment explanation
Indices: 19726930--19726982 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19726920 GTTAACTTAG
*
19726930 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19726956 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19726982 G
1 G
19726983 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19727189 original size:904 final size:899
Alignment explanation
Indices: 19725165--19733908 Score: 10462
Period size: 904 Copynumber: 9.8 Consensus size: 899
19725155 GTTCGCTTAG
* * * * * *
19725165 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGCTACGACAGTACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** ** * * * * *
19725230 CTCGGACATGTGCTAGTGCCATATTTTTCTTCACCGGGGCACCATCATCGGAGCGTAGCAGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGA
* ** * * *
19725295 ACCTGACCGACGGCATTGGGGTTTTGGCGTTC-----G--GGGGGGTGTGCGCACATGATGTGCA
131 ACCTGACTGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
19725353 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGATAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * * *
19725418 CCCCTTAAAGAGTATTTAAGATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGGAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
19725483 GGACACTTTTTTCAAATGGTCA-AAAATCTTGTACACTTCTAGTTTTTAGCTGATTTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
19725547 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAACTCCTCCCGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
*
19725612 TTTAAGAAAGTCCCGAACCGCAAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
456 TTTAA-AAAATCCCGAACCGCAAAAA-GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
19725677 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
19725742 TTGGCATGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
19725807 CATCCCGTCTCTCTGGCCGGCGTA--GAG--CG-CC-CCCGTCCGCTCGTTTCGTCGGTTGGCTT
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTT
* * ** * * * * *
19725866 AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAACAGACTGAGGGTTGTGGCAGTAGGATTGA
714 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGTCAGCAGGATCGG
* * * * * * * * *
19725931 CAGTACGTAGAGCGAGACCCGACCGATTCCCGGCTTGCGCATCTCGCCACTCTGGCCGGTTGAGC
779 CAGCACATAGAGGGGGACCAG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
19725996 GCCCGCACGCTCATTT-TTGGGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * * * ** *
19726052 GCATACGGAGTTCATTCCCAGTCTAAGCTCATATCAGATCGAGAGTTACGATAGCACATGCTGAG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19726117 CTCAGGCATGTGTTGGTGTCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCGA-CGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGC-ATCGCCGAAG
* * * * * * *
19726181 AACCTAACCGATGACATTAGGGTTCC-AGCGATCGGGGGGGCGGGAGGGGTGTGTGCACATGATG
130 AACCTGACTGACGGCATTGGGGTTCCGA-CGATC-GGGGGGCCGG-GGGGTGTGCGCACATGATG
* *
19726245 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
19726310 ACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTATGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
19726375 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTAGTACACTTCGAGTTGTTAGCTGATTTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
19726440 TGTGCATGACAAAAAAAATACAATGATCATGTCTACCAAGTTTCGGGCCAAAACTCATTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
*
19726505 AAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
** * *
19726570 TTGCCATTTAACGTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
19726635 CATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCAACCTATCGATCCACAGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
19726700 CGCATCCCGTCTCTCTTGCCGACGTAGTGCCCGCCTGCCCGCGCGCCCGCTCATTTCGTTGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTG--CGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTG
* * *
19726765 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCCTCAGTAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGTCAGCAGGA
* * * **
19726830 TCGGTAGCACACAGAGGGGGACCTAGCCGATCCTCAACTTGCGCATCCCGCCCCTCTGGCCGGCT
775 TCGGCAGCACATAGAGGGGGACC-AGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
19726895 GAGCGCCTGCACACTCATTTCGCGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *** * *
19726956 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAATAGCTCATTCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19727021 CTTGGGCATGTACTGTTGCCACATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGA
*
19727086 ACCTGACTGACAGCATTGGGGTTCCG-CGATCAGGGGGGCCGGAGGGGGTGTGCGCACATGATGT
131 ACCTGACTGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-G-GGGGGTGTGCGCACATGATGT
* * * * *
19727150 GCGATGGGCGCTGGTACTT-GCCTCTTATATTGTCCCCCTATCCCTCATCAAACTTGGAGAACGC
193 GCGATGGGTGCTGGTACTTGGCC-CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
19727214 ACACCCCCTTAAAGAGTATTTGAGATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
19727279 ATGGGGACACTTTTCTCAAATAGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATGTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
19727344 TGTGCATGCCAACAAAAATACAAAGATCACGTCGACCAAGCTTGGGGCCAAAACTCCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
19727409 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
19727474 TTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
19727539 CATTGGCACGCAGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * *
19727604 CGCATCCCGTCTCTTTGGTCGGCGTAGTGCCCGCCCGTTCGCCCGCCCGTTCGTTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTG--CGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTG
* * * * *
19727669 GCTTAGGCATACGAAGTTCATTCCCAGTTTAAGATCAGATCAGACCAAGGGCTGAAGT-AGCAGG
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTG-CGTCAGCAGG
** ** * * * * *
19727733 ATCAACAGCATGTTGAGGGGGA-CACGACCAATCCCCAGCTTGCGCATCCCACCCCTCTAGCCGG
774 ATCGGCAGCACATAGAGGGGGACCA-G-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
19727797 CTGAGCGCCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGGTCTAA
837 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAA
* **
19727860 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC-AGGGGTTGCAACAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA-GGGTTGCGGCAGCACATGCTGG
* * *
19727924 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTC-AGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGA-A
* * *
19727988 GAACCTGACTGACGGCATTGGGGTTCCGACGATCGAGGGGGTCGAAGGGGGTGTTCATCACATGA
129 GAACCTGACTGACGGCATTGGGGTTCCGACGATCG-GGGGGCCG--GGGGGTGTGC-GCACATGA
* * * *
19728053 TGTGCGATGGGTACTTGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTGGAGAAC
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
19728118 TCACACCCCCTTAAAGAGCATTTGAGATTTCACAGGTTTGCTGTCAGTAGCCAATAAAGTGTCTG
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
19728183 AAATGGGAACACTTTTTTCAAATAGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATGTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
*
19728248 TTTGTGCATGCCAACAAAAATTCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * * ** * *
19728313 AAATATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAATTTGTTAAAAATAGAAAACGAGTCT
450 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
19728378 TCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * * *
19728443 GGCATTCACATGCAGCAATACGAAGATGTGCCTAAACCCACCTACCACCCTTTCGATCCACGGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* ** *
19728508 TGCGCATCCCGTCTCTCTGGTCGGCGTAGT------GCCCGCCCGCCCGCTTGTTTCGACGGTTG
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTG
* * * * *
19728567 GCTTAGGCATACAGAGTTCATTCTCAGTCTAAGATC-G-GCAGCATGCAGAGGG--G-G--A-CC
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-A-CCA-AGGGTTGCGTCAGCA
* * ** * * **** ** ** * * *
19728624 CGATCGATCCCCGAC-TTG-CGCTTCCCA-CCCCTCTAGACAGCTGAGCGC--CCGTACGCTCGT
772 GGATCG-GCAGC-ACATAGAGGGGGACCAGCCGATC--CCCGGCT-TGCGCATCC---CGC-C-C
* ** * * * * * * *** * * *
19728684 TTCGTGGGTTGTCTTAG-GCATACGGA-GTTC-ATTC-CCAG-T--C-TAAGCATACGGAGGTGA
827 CTC-T-GGCCGGCTGAGCGC--CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
19728741 TTCCCAGTCTAA
888 TTCCCAGTCTAA
**
19728753 G-AT-CG--G---A----C---C-----T-------GACCGAGGGTTGTAGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
19728792 CTCGGGCATGTGCTGGTGCCG-TTTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGA
* * * *
19728856 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTACGCACATGATGTGT
131 ACCTGACTGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
** *
19728921 GATGGGTAATGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
19728986 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTTTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
19729051 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
19729116 GCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* ** * * * * *
19729181 ATTTAAAAAATCTTGAACCACAAAATGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATGTT
455 TTTTAAAAAATCCCGAACCGCAAAA-AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
19729246 GCCATGAAACTTCAAGTGAAGGCTTAAAGAACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
19729311 TTGGCATGTAGAAATATAAAGATGTGGCTAAACCCGCCTACCACGCTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
19729376 CATCCCGCCTCTCTGGCCGGCGCAGAGCCCGCCCACCCGCCCACCCATACTCTCATTTCGTCGGT
649 CATCCCGTCTCTCTGGCCGGCGTAGTG--CGCCCGCCCGCCC-GCC---CGCTCATTTCGTCGGT
* * ** *
19729441 TGGCTTAGGCATACGAAGTTCATTCTCAGTCTAAGATTGGACCAGACCAAGGGTTACGGT-AGCA
708 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGC-GTCAGCA
* * * * *
19729505 GGATCAGCAGCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCG
772 GGATCGGCAGCACATAGAGGGGGACCAG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
19729570 GCTGAGCACCCGCGCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19729634 GCATAC-AGGGTTAATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
19729698 GCTCGGGCATGTGCTGGTCCCGTATTTTTCTTCGCCAGGGCACCATCGTC-G-G-AT--------
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAG
* * *
19729752 -A---G--T------ATTGGGGTTTCGACGATCGAGGGGGCTGGGGGGTGTGAGCACATGATGTG
130 AACCTGACTGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTG
*
19729805 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
19729870 ACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGGAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
19729935 GGGGACACTTTTTTCAATTTGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19730000 TGCATGCCAATAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
19730065 ATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
19730130 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
19730195 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
19730260 CATCCCTTCTCTCTGGCCGACGTAGAGCCCGCCCGCCCGCCCGCCTATACGCTCGTTTCATCGGT
649 CATCCCGTCTCTCTGGCCGGCGTAGTG--CGCCCGCCCGCCCGCC----CGCTCATTTCGTCGGT
* *
19730325 TGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCAAGGGTTACGGT-AGCA
708 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGC-GTCAGCA
* * * * * **
19730389 GGATCAGCAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATGCCGCCCCTCTATCCG
772 GGATCGGCAGCACATAGAGGGGGACCAG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
19730454 GCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
836 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19730518 GCATAC-AGGGTTAATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTGGGGCAGCACATGCTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * **
19730582 GCTCGAGCATGTGCTAGT-CCAGCATTTTTCTTCACCGGGGCACCATCGTC-G-G-A----C---
65 GCTCGGGCATGTGCTGGTGCC-GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAA
* *
19730636 G-----G--T------ATTGGGGTTCCGACGATCGAGGGGGCCGAGGGGGTGCGAGCACATGATG
129 GAACCTGACTGACGGCATTGGGGTTCCGACGATCG-GGGGGCCG-GGGGGTGTGCGCACATGATG
*
19730688 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
19730753 ACACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGGA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * * *
19730818 ATGGGGATAATTTTTTCAATTTGTCACAAAATCTTGTACACTTAGATTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
19730883 TGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAC-CCTT-CGAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCG-A
* * * *
19730946 AAAAATTTTAAAAATTCCCGAACCGGAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCG
450 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
19731011 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
19731076 TGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
19731141 TGCGCATCCTGCCTCTCTGGCCGACGTAGT------GCCTGCCCGCTCGCTCATTTCGTTGGTTG
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTG
* * ** *
19731200 GCTTAGGCATATGGAGTTAATTCCCAGTCTAAGATTGGACCAGACCGAGGG-T---T-A-C-GG-
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGTCAGCAGGA
* * *
19731257 T----AGCACACAGAGGGGGACCAGGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCT
775 TCGGCAGCACATAGAGGGGGACCA-GCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
19731318 GAACGCCCGCACGCTCGTTTCGTGGGTT-ACCTTAGGCATACGGAGTTCATTCTCAGTCTAA
839 GAGCGCCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19731379 GCAAACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
19731444 CTCGGGTACGTGCT-GTGTCGCATTTTTCTTCTTCGGGGCACCATCG-CATGAGCATCGTC-AGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGA-A
* * *
19731506 GAGCCTGA-TCGACGGCATTGGGGTTTCGACGATCGGGGGGGCC-GGGGG-GTGCACACATGATG
129 GAACCTGACT-GACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATG
* * * *
19731568 TGCGATGGGTGCTGGTACTTGTCCCTTATACTGG-CCCCTATCCCTCATCAAGCCTCAAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
19731632 ACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
19731697 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
19731762 TGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTCGGGCCAAAACTACTTTCAAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
19731827 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGT-GTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
19731891 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTGTGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * **
19731956 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCTGCCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * *
19732021 CGCATCCCGTCTCTCTGGCCTACGTAGTGCCCGCCCGTCCGCCCGCCCGTTCATTTCGTCGG-TG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTG--CGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTG
* * ** * * *
19732085 GGTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTACGACAGCAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGTCAGCAGGA
* * * * * * *
19732150 TCGACAGCACGTAGAAGGGGACCCGACCAATCCCCGGCTTGCTCATCCCGCCCCTCTGGCCGACT
775 TCGGCAGCACATAGAGGGGGACCAG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * ** * * * *
19732215 GAGCGCCTGTACGCTAATTTCATGGGTTGACTTAGTCATAAGGAGTTCATTCCTAGTCTAA
839 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** **
19732276 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGAAGCACATATTTAG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** ** * * *
19732341 CCCGGGCATGCGCTGGTGCTACATTTTTCTTCCCCGAGGCACCATCATCGGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGA
* ** * *
19732406 ACCTGACCGGTGGCATTGGAGTTCTGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACTGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
19732471 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19732536 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTTTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
19732601 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
19732666 GCATGCCAACAAAAATACAAGGTTCAAGTCTACCAAGTTTGGGGCCAAAAATCGTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * ** *
19732731 TTTTATAAAATCCCTAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAATCGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
19732796 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
19732861 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
19732926 ATCCTGTCTCTCTGG-CTG-GTA-T-AG--TGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTA
* * * * * *
19732985 GGCATACAGAGTTCATTCCCAGTCTAATATCAGACC-GAACCAAGGGTTACGGCAACAGGATCTG
715 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCAAGGGTTGCGTCAGCAGGATCGG
* * * * * ** *
19733049 TAGCACGTAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCCTCCCGCCCGTCTGGCCGATTGAGT
779 CAGCACATAGAGGGGGA-CCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
19733114 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19733171 GCATAC-AGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGTAGCACATGCCGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
19733235 G-TCGGGCATGTGCTGGTGCTGCATTTTTCTTTG-CGAGGCACCATCGTCGGATCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAG
* * * * *
19733298 AACTTGACCGGCGGCATTGGGGTTCTGATGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACTGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
19733363 CAATGTGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
19733428 ACCCCCTTAAAGAGCATTTGAGATTTTAC-GGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19733492 TGTGGACATTTTTTTCAAATGGTCACAAAAT-TGTGTACACTTCGAGTTTTTAGCTGATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCT-TGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
19733556 TGTGCATGCCAACAAAAATACATGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** *
19733621 AAATTTTAAAAAATCCCAAACCCCAAAAAGTTTTGAAAATCACGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
19733686 TTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19733751 CATTGGCATGCAAAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
19733816 CGCATCCCATCTCTTTGGCCGGCGTAGT------GCCCGCCCGCCCGCTCATTTCGTCGGTTGGC
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGC
19733875 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
19733909 GAAGTGGACC
Statistics
Matches: 6862, Mismatches: 792, Indels: 400
0.85 0.10 0.05
Matches are distributed among these distances:
859 1 0.00
860 28 0.00
861 174 0.03
862 3 0.00
863 272 0.04
864 182 0.03
865 1 0.00
866 76 0.01
867 49 0.01
868 3 0.00
870 1 0.00
872 8 0.00
873 62 0.01
874 3 0.00
875 15 0.00
876 55 0.01
877 14 0.00
878 158 0.02
879 260 0.04
880 53 0.01
881 43 0.01
882 5 0.00
883 33 0.00
884 524 0.08
885 834 0.12
886 28 0.00
887 126 0.02
888 1 0.00
889 1 0.00
890 1 0.00
891 7 0.00
892 11 0.00
893 617 0.09
894 69 0.01
895 404 0.06
896 191 0.03
897 273 0.04
898 132 0.02
899 22 0.00
900 51 0.01
901 267 0.04
902 146 0.02
903 167 0.02
904 936 0.14
905 25 0.00
906 456 0.07
907 50 0.01
908 24 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGA
ACCTGACTGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGTCAGCAGGATCGGCA
GCACATAGAGGGGGACCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19727649 original size:12 final size:12
Alignment explanation
Indices: 19727632--19727656 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
19727622 TCGGCGTAGT
19727632 GCCCGCCCGTTC
1 GCCCGCCCGTTC
19727644 GCCCGCCCGTTC
1 GCCCGCCCGTTC
19727656 G
1 G
19727657 TTTCGTCGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.56, G:0.28, T:0.16
Consensus pattern (12 bp):
GCCCGCCCGTTC
Found at i:19727863 original size:26 final size:26
Alignment explanation
Indices: 19727834--19727886 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19727824 GTTGACTTAG
19727834 GCATACGGAGTTCATT-CCAGGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19727860 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19727886 G
1 G
19727887 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19728724 original size:27 final size:27
Alignment explanation
Indices: 19728694--19728750 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
19728684 TTCGTGGGTT
* *
19728694 GTCTTAGGCATACGGAGTTCATTCCCA
1 GTCTTAAGCATACGGAGGTCATTCCCA
*
19728721 GTC-TAAGCATACGGAGGTGATTCCCA
1 GTCTTAAGCATACGGAGGTCATTCCCA
19728747 GTCT
1 GTCT
19728751 AAGATCGGAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (27 bp):
GTCTTAAGCATACGGAGGTCATTCCCA
Found at i:19728730 original size:26 final size:26
Alignment explanation
Indices: 19728701--19728753 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19728691 GTTGTCTTAG
*
19728701 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
*
19728727 GCATACGGAGGTGATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
19728753 G
1 G
19728754 ATCGGACCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:19729650 original size:26 final size:26
Alignment explanation
Indices: 19729608--19729660 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19729598 GTTGACTTAG
* *
19729608 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
19729634 GCATACAGG-GTTAATTCCCAATCTAA
1 GCATAC-GGAGTTAATTCCCAATCTAA
19729660 G
1 G
19729661 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAATCTAA
Found at i:19730038 original size:885 final size:883
Alignment explanation
Indices: 19728612--19733908 Score: 6611
Period size: 885 Copynumber: 6.0 Consensus size: 883
19728602 CGGCAGCATG
* * * * * * *
19728612 CAGAGGGGGACCCGATCGATCCCCGACTTGCGCTTCCCACCCCTCTAGACAGCTGAGCGCCCGTA
1 CAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
19728677 CGCTCGTTTCGTGGGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGGTGAT
66 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCAT
* **
19728742 TCCCAGTCTAAGATCGGACCTGACCGAGGGTTGTAGCAGCACATGCTGGGCTCGGGCATGTGCTG
130 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * *
19728807 GTGCCG-TTTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCA
195 GTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCAGAG-ATCA-C---G----T--------G-A
* * **
19728871 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGT-ACGCACATGATGTGTGATGGGTAATGGTA
242 TTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGA-GCACATGATGTGCGATGGGTGCTGGTA
*
19728935 CTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
306 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
19729000 ATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTTTAAAATGGGGACACTTTTTTC
371 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
19729065 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAA
436 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * **
19729130 ATAAAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCAAAAAAAATTTAAAAAATCTT
501 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
* * *
19729195 GAACCACAAAATGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATGTTGCCATGAAACTTCA
566 GAACCACAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * *
19729260 AGTGAAGGCTTAAAGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAA
630 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * * *
19729325 TATAAAGATGTGGCTAAACCCGCCTACCACGCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT
695 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
19729390 GGCCGGCGCAGAGCCCGCCCACCCGCCCACCCATACTCTCATTTCGTCGGTTGGCTTAGGCATAC
760 GGCCGGCGTAGTGCCCGCCCGCCCGCCC-CCC---CGCTCATTTCGTCGGTTGGCTTAGGCATAC
* **
19729455 GAAGTTCATTCTCAGTCTAAGATTGGACCAGACCAAGGGTTACGGTAGCAGGATCAGCAGCACA
821 GAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGTAGCAGGATC-GCAGCACA
* * *
19729519 CAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCG
1 CAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
19729584 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGGGTTAAT
66 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCAT
* *
19729649 TCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTG
130 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * *
19729714 GTCCCGTATTTTTCTTCGCCAGGGCACCATCGTC-G-GAT-A-GT-ATTGGGGTTTCGACGATCG
195 GTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCAGAGATCACGTGATTGGGGTTCCGACGATCG
*
19729774 AGGGGGCTGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
260 AGGGGGCCGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
19729839 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTT
325 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * * *
19729904 TGCTGCTAGTAGCCATTAAAGTGTTTGGAATGGGGACACTTTTTTCAATTTGTCACAAAATCTTG
390 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
19729969 TACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCAAC
455 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
19730034 CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAA
520 CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAA
19730099 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
585 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
19730164 TTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
650 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * *
19730229 CACCTACCACTCTATCGATCCACGGCTTGCGCATCCCTTCTCTCTGGCCGACGTAGAGCCCGCCC
715 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * * *
19730294 GCCCGCCCGCCTATACGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAA
780 GCCCGCCC-CC---CCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAA
19730359 GATCAGACCAGACCAAGGGTTACGGTAGCAGGATCAGCAGCACA
841 GATCAGACCAGACCAAGGGTTACGGTAGCAGGATC-GCAGCACA
* * * * * ** *
19730403 TAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATGCCGCCCCTCTATCCGGCTAAGCGCCCGCA
1 CAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
19730468 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGGGTTAAT
66 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCAT
* * * *
19730533 TCCAAGTCTAAGATCGGACCGGACCGAGGGTTGGGGCAGCACATGCTGGGCTCGAGCATGTGCTA
130 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* *
19730598 GT-CCAGCATTTTTCTTCACCGGGGCACCATCGTC-G-GA-C-GGT-ATTGGGGTTCCGACGATC
195 GTGCC-GCATTTTTCTTCGCCGGGGCACCATCGTCAGAGATCACGTGATTGGGGTTCCGACGATC
*
19730657 GAGGGGGCCGAGGGGGTGCGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
259 GAGGGGGCCG-GGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
19730722 CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGAGG
323 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * * * *
19730787 TTTGCTGCCAGTAGCCATTAAAGTGTTTGGAATGGGGATAATTTTTTCAATTTGTCACAAAATCT
388 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
19730852 TGTACACTTAGATTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCT
453 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * **
19730917 ACCAAGTTTGGGGCCAAAAAC-CCTTCGAAAAAAATTTTAAAAATTCCCGAACCGGAAAAAGTTT
518 ACCAAGTTTGGGGCC-AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTT
* *
19730981 TAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGA
582 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
19731046 CCATTGTACGAATTTACAAGCCATAAAAATTGCATTGGCATGAAGAAATATGAAGATGTGCCTAA
647 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * * *
19731111 ACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCTGCCTCTCTGGCCGACGTAGT----G
712 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * * * *
19731172 CCTGCCCG----CTCGCTCATTTCGTTGGTTGGCTTAGGCATATGGAGTTAATTCCCAGTCTAAG
777 CCCGCCCGCCCCCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAG
** *
19731233 ATTGGACCAGACCGAGGG-T----TA-C-GG-T---AGCACA
842 ATCAGACCAGACCAAGGGTTACGGTAGCAGGATCGCAGCACA
* * * * * *
19731264 CAGAGGGGGACCAGGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAACGCCCGCA
1 CAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
19731329 CGCTCGTTTCGTGGGTT-ACCTTAGGCATACGGAGTTCATTCTCAGTCTAAGCAAACGAAGTTCA
66 CGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG-AGTTCA
* * * * *
19731393 TTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCACATGCTGGGCTCGGGTACGTGCT
129 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* **
19731458 -GTGTCGCATTTTTCTTCTTCGGGGCACCATCG-CATGAGCATCGTCAGAGAGCCTGATCGACGG
194 GGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCA-GAG-A---TC----A--C-G-T-----G
* * *
19731521 CATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTG-CA-CACATGATGTGCGATGGGTGCTGGT
241 -ATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGT
* * * * *
19731584 ACTTGTCCCTTATACTGG-CCCCTATCCCTCATCAAGCCTCAAGAACTCACACCCACTTAAAGAG
305 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
19731648 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
370 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
19731713 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAA
435 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * *
19731778 AATACAAGGATCATGTCTACCAAGTTTCGGGCCAAAACTACTTTCAAAAAAATTTTAAAAAATCC
500 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
** **
19731843 CGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGT-GTCTTGCCATGAAACTTCA
565 CGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * *
19731907 CGTGAAGGCTTAAGGGACCGTTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAA
630 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
**
19731972 TATGAAGATGTGCCTAAACCTGCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
695 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
** * * * * * *
19732037 GGCCTACGTAGTGCCCGCCCGTCCGCCCGCCCGTTCATTTCGTCGG-TGGGTTAGGCATATGGAG
760 GGCCGGCGTAGTGCCCGCCCGCCCGCCCCCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAG
** * ** *
19732101 TTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTACGACAGCAGGATCGACAGCACG
825 TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGTAGCAGGATCG-CAGCACA
* * * * * * * *
19732161 TAGAAGGGGACCCGACCAATCCCCGGCTTGCTCATCCCGCCCCTCTGGCCGACTGAGCGCCTGTA
1 CAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
** * * * * *
19732226 CGCTAATTTCATGGGTTGACTTAGTCATAAGGAGTTCATTCCTAGTCTAAGCATACAAAGTTCAT
66 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCAT
* * * ** ** * *
19732291 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGAAGCACATATTTAGCCCGGGCATGCGCTG
130 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
** * * *
19732356 GTGCTACATTTTTCTTCCCCGAGGCACCATCATCGGAGCATCACCGAAGAACCTGACCGGTGGCA
195 GTGCCGCATTTTTCTTCGCCGGGGCA-C--CATC---G--TCA--G-AG-A--TCA-C-GT-G-A
* * *
19732421 TTGGAGTTCTGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
242 TTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTAC
* *
19732486 TTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
307 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
19732551 TTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCA
372 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
19732616 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
437 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * * * *
19732681 TACAAGGTTCAAGTCTACCAAGTTTGGGGCCAAAAATCGTTCCGAAAAAATTTTATAAAATCCCT
502 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCG
* ** * *
19732746 AACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCACG
567 AACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
19732811 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCATGCAGAAATA
632 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
*
19732876 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGG
697 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* ** * *
19732941 CTGGTATAGT----GCCCGCCCG----CCCGCTCGTTTCATCGGTTGGCTTAGGCATAC-AGAGT
762 CCGGCGTAGTGCCCGCCCGCCCGCCCCCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGA-AGT
* * * * *
19732997 TCATTCCCAGTCTAATATCAGACC-GAACCAAGGGTTACGGCAACAGGATCTGTAGCACG
826 TCATTCCCAGTCTAAGATCAGACCAG-ACCAAGGGTTACGGTAGCAGGATC-GCAGCACA
* * * * * ** *
19733056 TAGAGGGGGACCC-AGTCGATCCCCGGCTTGCGCCTCCCGCCCGTCTGGCCGATTGAGTGCCCGC
1 CAGAGGGGGACCCGA-CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
*
19733120 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCA
65 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCA
* * * *
19733185 TTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGTAGCACATGCCGGG-TCGGGCATGTGCT
129 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * * *
19733249 GGTGCTGCATTTTTCTTTG-CGAGGCACCATCGTCGGATCATCGTCGGAGAACTTGACCGGCGGC
194 GGTGCCGCATTTTTCTTCGCCGGGGCACCA---TC-G-TCA------GAG-A--TCA-C-G-TG-
* * * * * *
19733313 ATTGGGGTTCTGATGATCG-GAGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGTGTGCTTGT
241 ATTGGGGTTCCGACGATCGAG-GGGGCCGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGT
*
19733377 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACCCCCTTAAAGAG
305 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
19733442 CATTTGAGATTTTAC-GGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACATTTTTT
370 CATTTGAGATTTTACAGG-TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
19733506 TCAAATGGTCACAAAAT-TGTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACA
434 TCAAATGGTCACAAAATCT-TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
19733570 AAAATACATGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
498 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
* * ** **
19733635 CCCAAACCCCAAAAAGTTTTGAAAATCACGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
563 CCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
19733700 CACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAA
628 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * *
19733765 AATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCATCTCT
693 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
19733830 TTGGCCGGCGTAGT----GCCCGCCCG----CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGG
758 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCCCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGA
19733887 AGTTCATTCCCAGTCTAAGATC
823 AGTTCATTCCCAGTCTAAGATC
19733909 GAAGTGGACC
Statistics
Matches: 3915, Mismatches: 382, Indels: 200
0.87 0.08 0.04
Matches are distributed among these distances:
859 1 0.00
860 29 0.01
861 175 0.04
862 1 0.00
863 1 0.00
865 1 0.00
866 2 0.00
867 2 0.00
868 2 0.00
872 1 0.00
873 60 0.02
875 1 0.00
876 2 0.00
878 153 0.04
879 255 0.07
880 41 0.01
881 9 0.00
882 14 0.00
883 28 0.01
884 520 0.13
885 836 0.21
886 21 0.01
890 7 0.00
891 2 0.00
892 7 0.00
893 572 0.15
894 45 0.01
895 217 0.06
896 1 0.00
897 162 0.04
898 63 0.02
899 2 0.00
900 41 0.01
901 268 0.07
902 149 0.04
903 3 0.00
904 3 0.00
905 2 0.00
906 1 0.00
907 185 0.05
908 27 0.01
909 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (883 bp):
CAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATT
CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
TGCCGCATTTTTCTTCGCCGGGGCACCATCGTCAGAGATCACGTGATTGGGGTTCCGACGATCGA
GGGGGCCGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAA
AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
CCCGCCCCCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCA
GACCAGACCAAGGGTTACGGTAGCAGGATCGCAGCACA
Found at i:19730534 original size:26 final size:26
Alignment explanation
Indices: 19730492--19730544 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
19730482 GTTGACTTAG
*
19730492 GCATACGGAGTTCATTCCCAA-TCTAA
1 GCATACGGAGTTAATT-CCAAGTCTAA
19730518 GCATACAGG-GTTAATTCCAAGTCTAA
1 GCATAC-GGAGTTAATTCCAAGTCTAA
19730544 G
1 G
19730545 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 4 0.17
26 18 0.75
27 2 0.08
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCAAGTCTAA
Found at i:19733181 original size:26 final size:26
Alignment explanation
Indices: 19733145--19733197 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19733135 GTTGACTTAG
*
19733145 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19733171 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19733197 G
1 G
19733198 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19733493 original size:893 final size:893
Alignment explanation
Indices: 19730639--19733907 Score: 4526
Period size: 893 Copynumber: 3.7 Consensus size: 893
19730629 GTCGGACGGT
* * *
19730639 ATTGGGGTTCCGACGATCGAGGGGGCCGAGGGGGTGCGAGCACATGATGTGCGATGGGTGCTGGT
1 ATTGGGGTTCTGACGATCGAGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
19730704 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
65 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
19730769 CATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGGAATGGGGATAATTTTTT
130 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTT
* * * * *
19730834 CAATTTGTCACAAAATCTTGTACACTTAGATTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAA
195 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
19730899 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAC-CCTTCGAAAAAAATTTTAAAAATTC
260 AATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCAAAAAAATTTTAAAAAATC
* * *
19730963 CCGAACCGGAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
324 CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * *
19731028 ATGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATTGCATTGGCATGAAGAA
389 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * *
19731093 ATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCTGCCTCTC
454 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * * * * *
19731158 TGGCCGACGTAGTGCCTGCCCGCTCGCTCATTTCGTTGGTTGGCTTAGGCATATGGAGTTAATTC
519 TGGCCGGCATAGTGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
* * *
19731223 CCAGTCTAAGATTGGACCAGACCGAGGGTT-----A-C-GG-T---AGCACACAGAGGGGGACCA
584 CCAGTCTAAGATTGGACCAGACCAAGGGTTACGGCAGCAGGATCGCAGCACATAGAGGGGGACCC
* * * * *
19731277 GGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTG
649 GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTG
* *
19731342 GGTT-ACCTTAGGCATACGGAGTTCATTCTCAGTCTAAGCAAAC-GAAGTTCATTCCCAGTCTAA
714 GGTTGA-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAA
* * * * *
19731405 GATCGGACCGGATCGAGGGTTACGGTAGCACATGCTGGGCTCGGGTACGTGCT-GTG-TCGCATT
777 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCT-GCATT
* * * * * * *
19731468 TTTCTTCTTCGGGGCACCATCG-CATGAGCATCGTCAGAGAGCCTGATCGACGGC
841 TTTCTTC-GCGAGGCACCATCGTC-GGAGCATCGTCGGAGAACCTGACCGGCGGC
* *
19731522 ATTGGGGTT-TCGACGATCGGGGGGGCC-GGGGG-GTGCACACATGATGTGCGATGGGTGCTGGT
1 ATTGGGGTTCT-GACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * * *
19731584 ACTTGTCCCTTATACTGG-CCCCTATCCCTCATCAAGCCTCAAGAACTCACACCCACTTAAAGAG
65 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
19731648 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
130 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTT
* *
19731713 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAA
195 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * *
19731778 AATACAAGGATCATGTCTACCAAGTTTCGGGCCAAAACTACTTTCAAAAAAATTTTAAAAAATCC
260 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
* *
19731843 CGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGT-GTCTTGCCATGAAACTTCA
325 CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * *
19731907 CGTGAAGGCTTAAGGGACCGTTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAA
390 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
**
19731972 TATGAAGATGTGCCTAAACCTGCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
455 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
** * * * *
19732037 GGCCTACGTAGTGCCCGCCCGTCCGCCCGCCCGTTCATTTCGTCGG-TGGGTTAGGCATATGGAG
520 GGCCGGCATAGTGCCCG--C--CCGCCCG--C--TCATTTCATCGGTTGGCTTAGGCATACGGAG
* * * *
19732101 TTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTACGACAGCAGGATCGACAGCACGTAGAA
577 TTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTACGGCAGCAGGATCG-CAGCACATAGAG
* * * * *
19732166 GGGGACCCGACCAATCCCCGGCTTGCTCATCCCGCCCCTCTGGCCGACTGAGCGCCTGTACGCTA
641 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC
* * * * * *
19732231 ATTTCATGGGTTGACTTAGTCATAAGGAGTTCATTCCTAGTCTAAGCATACAAAGTTCATTCCCA
706 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCA
* * * ** ** * *
19732296 GTCTAAGATCAGACCAGACCGAGGGTTGCGGAAGCACATATTTAGCCCGGGCATGCGCTGGTGCT
771 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCT
* * * ** * *
19732361 ACATTTTTCTTCCCCGAGGCACCATCATCGGAGCATCACCGAAGAACCTGACCGGTGGC
836 GCATTTTTCTT-CGCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGC
*
19732420 ATTGGAGTTCTGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
1 ATTGGGGTTCTGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
19732485 CTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
66 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
19732550 ATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTC
131 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTC
19732615 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
196 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * * *
19732680 ATACAAGGTTCAAGTCTACCAAGTTTGGGGCCAAAAATCGTTCCGAAAAAATTTTATAAAATCCC
261 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
* ** *
19732745 TAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCAC
326 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
19732810 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCATGCAGAAAT
391 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
*
19732875 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTG
456 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * *
19732940 GCTGGTATAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCC
521 GCCGGCATAGTGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* ** * * *
19733005 AGTCTAATATCAGACC-GAACCAAGGGTTACGGCAACAGGATCTGTAGCACGTAGAGGGGGACCC
586 AGTCTAAGATTGGACCAG-ACCAAGGGTTACGGCAGCAGGATC-GCAGCACATAGAGGGGGACCC
* * * * * *
19733069 -AGTCGATCCCCGGCTTGCGCCTCCCGCCCGTCTGGCCGATTGAGTGCCCGCACGCTCATTTCGT
649 GA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGT
19733133 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG
713 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG
* * * *
19733198 ATCGGACCGGACCAAGGGTTACGGTAGCACATGCCGGG-TCGGGCATGTGCTGGTGCTGCATTTT
778 ATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTT
* * *
19733262 TCTTTGCGAGGCACCATCGTCGGATCATCGTCGGAGAACTTGACCGGCGGC
843 TCTTCGCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGC
* * * *
19733313 ATTGGGGTTCTGATGATCG-GAGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGTGTGCTTGT
1 ATTGGGGTTCTGACGATCGAG-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
19733377 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACCCCCTTAAAGAG
65 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
19733442 CATTTGAGATTTTAC-GGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACATTTTTT
130 CATTTGAGATTTTACAGG-TTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTT
*
19733506 TCAAATGGTCACAAAAT-TGTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACA
194 TCAAATGGTCACAAAATCT-TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
19733570 AAAATACATGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
258 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
* * ** *
19733635 CCCAAACCCCAAAAAGTTTTGAAAATCACGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
323 CCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
19733700 CACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAA
388 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * *
19733765 AATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCATCTCT
453 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * *
19733830 TTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
518 CTGGCCGGCATAGTGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
19733895 CCCAGTCTAAGAT
583 CCCAGTCTAAGAT
19733908 CGAAGTGGAC
Statistics
Matches: 2117, Mismatches: 229, Indels: 70
0.88 0.09 0.03
Matches are distributed among these distances:
878 157 0.07
879 255 0.12
880 44 0.02
881 5 0.00
882 6 0.00
883 24 0.01
884 1 0.00
885 51 0.02
886 11 0.01
890 1 0.00
891 1 0.00
892 6 0.00
893 587 0.28
894 39 0.02
895 217 0.10
896 2 0.00
897 162 0.08
898 76 0.04
899 9 0.00
900 46 0.02
901 264 0.12
902 153 0.07
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (893 bp):
ATTGGGGTTCTGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGGCATAGTGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATTGGACCAGACCAAGGGTTACGGCAGCAGGATCGCAGCACATAGAGGGGGACCCGA
CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCT
TCGCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGC
Found at i:19735098 original size:718 final size:710
Alignment explanation
Indices: 19733171--19735336 Score: 3065
Period size: 718 Copynumber: 3.0 Consensus size: 710
19733161 CCCAGTCTAA
* * * *
19733171 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGTAGCACATGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACTGGACCGAGGGTTACGGTAGCACATGCTGGG
* * *
19733236 -TCGGGCATGTGCTGGTGCTGCATTTTTCTT-TGCGAGGCACCATCGTCGGATCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCT-CGAGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
19733299 ACTTGACCGGCGGCATTGGGGTTCTGATGATCGGAGGGGCC-G-GGGGGTGTGCGCACATGATGT
129 ACCTGACTGGCGGCATTGGGGTTCCGATGATCGGAGGGGCCGGAGGGGGTGTACGCACATGATGT
* * *
19733362 GCAATGTGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCA
194 GCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
19733427 CACCCCCTTAAAGAGCATTTGAGATTTTAC-GGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
19733491 ATGTGGACATTTTTTTCAAATGGTCACAAAATTGTGTACACTTCGAGTTTTTAGCTGATTTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATT-TGTACACTTCGAGTTTTTAGCTGATTTTTTT
* * * * **
19733556 TGTGCATGCCAACAAAAATACATGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAA
387 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCAAAACTCCCTCTGAAA
* * * *
19733621 AAATTTTAAAAAATCCCAAACCCCAAAAAGTTTTGAAAATCACGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAAT-CCTAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTC
*
19733686 TTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
19733751 CATTGGCATGCAAAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
580 CATTGGCA-GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
19733816 CGCATCCCATCTCTTTGGCCGGCGTAGTG---CCCGCCCG--CCCGCTCATTTCGTCGGTTGGCT
644 CGCAT-CCGTCTCTCTGGCCAGCGTAGTGCCCCCCGCCCGCTCCCGCTCATTTCGTCGGTTGGCT
19733876 TAG
708 TAG
* *
19733879 GCATACGGAGTTCATTCCCAGTCTAAGATCGAAGTGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG-ACTGGACCGAGGGTTACGGTAGCACATGCTGGG
** * *
19733944 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCGAGGCACCATCGTCGGAGCATCACCGGAGAA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCGAGGCACCATCGTCGGAGCATCGCCGGAGAA
* *
19734009 CCTGA-TCGGCGGCATTGGGGTTCCGGTGATCGGAGGGGCCGAAGGGCGGGTGTACGCACATGAT
130 CCTGACT-GGCGGCATTGGGGTTCCGATGATCGGAGGGGCCGGA-GG-GGGTGTACGCACATGAT
*
19734073 GTGCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTCGAGAACT
192 GTGCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* **
19734138 CACACGCCCTTAAAGAGCATTTGAGATTTTACAACTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
19734203 AATGGGGACACTTTTTTCAAATGGTCATAAAATTTTGTACACTTCAAGTTTTTAGCTGA-TTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAA-TTTGTACACTTCGAGTTTTTAGCTGATTTTTT
* *
19734267 TTA-GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CGTTTCGA
386 TTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCCTCT-GA
* * ** *
19734330 AAAAATTTTTAAAAATCCCTAGCCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAACAAGTCG
449 AAAAATTTTAAAAAAT-CCTAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCG
* *
19734395 TCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAA
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
19734460 GGCATTGGCA-CATAGAAATATGAAGATGTGCCTAAACCCATCAACCACCCTATCGATCCACGGC
578 GGCATTGGCAGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
*
19734524 TTGGGCATCTCGTCTCTCTGGCCAGCGTAGTGCCCACCCGCCCGCCCTCCCGCTCATTTCGTCGG
641 TTGCGCATC-CGTCTCTCTGGCCAGCGTAGTGCCC-CCCGCCCG--CTCCCGCTCATTTCGTCGG
19734589 TTGGCTTAG
702 TTGGCTTAG
* * * **
19734598 GCATGCGGAGTTCATTCCTAGTCTAAGATCAGACTAGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACTGGACCGAGGGTTACGGTAGCACATGCTGGG
* * *
19734663 CTCGGGCATTTGCTGGTGCCGCATTTGTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-TCGAGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
19734728 ACCTGACTGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGAGGGGGTGTATGCACATGATGT
129 ACCTGACTGGCGGCATTGGGGTTCCGATGATCGGAGGGGCCGGAGGGGGTGTACGCACATGATGT
* * * *
19734793 GCGATGGGTGCTGGTATTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
19734858 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-ACATTAGCCATTAAAGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
19734922 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAAT-TTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
* * *
19734987 ATGCATACCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGGGCAAAACTCCCTCTGAAAAA
388 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCCTCTGAAAAA
* ** * *
19735052 ATTTAAAAAAATCCTGAACCACAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACTAGTCGTCTT
453 ATTTTAAAAAATCCT-AACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTT
* *
19735117 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCAATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
19735182 CTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCG
582 TTGGCA-GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
19735247 CATCCTGTCTCTCTAGCCAAG-GTAGTGCCCGCCCGCCCGCT--CGCTCGTTTCATCGGTTGGCT
646 CATCC-GTCTCTCTGGCC-AGCGTAGTGCCC-CCCGCCCGCTCCCGCTCATTTCGTCGGTTGGCT
*
19735309 TTG
708 TAG
* *
19735312 GCATACGAAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATTCCCAGTCTA
19735337 GGATTGAACC
Statistics
Matches: 1300, Mismatches: 123, Indels: 64
0.87 0.08 0.04
Matches are distributed among these distances:
707 1 0.00
708 57 0.04
709 93 0.07
710 7 0.01
711 247 0.19
712 9 0.01
713 190 0.15
714 44 0.03
715 8 0.01
716 3 0.00
717 78 0.06
718 334 0.26
719 159 0.12
720 69 0.05
721 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (710 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACTGGACCGAGGGTTACGGTAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCGAGGCACCATCGTCGGAGCATCGCCGGAGAAC
CTGACTGGCGGCATTGGGGTTCCGATGATCGGAGGGGCCGGAGGGGGTGTACGCACATGATGTGC
GATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTATG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCCTCTGAAAAAATT
TTAAAAAATCCTAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
GTCTCTCTGGCCAGCGTAGTGCCCCCCGCCCGCTCCCGCTCATTTCGTCGGTTGGCTTAG
Found at i:19735507 original size:25 final size:25
Alignment explanation
Indices: 19735471--19735518 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
19735461 GTTCACTTAG
19735471 GCATACGAAGTTCATTCCCAGTCAA
1 GCATACGAAGTTCATTCCCAGTCAA
* *
19735496 GCATACGGAGTTTATTCCCAGTC
1 GCATACGAAGTTCATTCCCAGTC
19735519 TAAGATTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCCAGTCAA
Found at i:19740723 original size:875 final size:869
Alignment explanation
Indices: 19738863--19742939 Score: 5389
Period size: 868 Copynumber: 4.7 Consensus size: 869
19738853 GTCGCATTTA
*
19738863 GGGGGG-GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
19738927 CTCATCAAACC-CGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
19738991 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT-ATCAAAATCGTGTACACTT
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA-CAAAATCTTGTACACTT
** * * * *
19739055 TAAGTTTTTATCTGAATTTTTTTGTGCATGCCAAAAAAAAAAACAAGGATCACATCTACCAAGTT
195 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
19739120 TGGGGCCAAAACTCCTTCCAAAAAAGTTTAAAAAATCTCAAACCGCAAAAGGTTTCAAAAATCAT
259 TGGGGCCAAAACTCCTTCCAAAAAA-TTTTAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCAT
* * * * *
19739185 GAAAAATAGAAAACGAGTCGTCTTGCTATTAAACTTCACATGAAGGCTTAACGGACCATTGTATG
323 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * * *
19739250 AATTTACAAGCCATAAAAATGGCATTGGCACGGAGAAATACGAAGATGTGCCTAAACCTACCTAC
388 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* ** * * *
19739315 CACCCTATCGATACACAGCTTACGCATCCCATCTCTCTGGCCGGCGTAGTG--C-CC-ACCCGCC
453 CACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCC
** * * * *
19739376 CAATCGTTTCGTCAGTTGGCTTAGGCACACGGAGTTCATTCCCAGTCTATGATCAGACCGGACTG
518 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * * *
19739441 AGGGTTGCAGCAGCAGGATCCACAGCACGCAGAGGGGGACCCTGCCAATCCCCGGCTT-ACGCAT
583 AGGGTTGCAGCAGCAGGATCAACAGCACGCAGAGGGGGACCC-GTCGATCCCCGACTTGA-GCA-
* *
19739505 TCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-AGGAG
645 TCCCCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACA-GAG
* *
19739569 TTCATTCCCAGTTTAAGATCGGACCGCACCGAGGGTTGCGGCAGCACATGCTGGGCTCG-GTCAT
709 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAG-CAT
* * * * *
19739633 GTGCTGGTGTCATATTTTTCTTCGTC-GGGGTACCATCGTCGGAGCATCGTCGGAGAACCTGACC
773 GTGCTGGTGTCGTATTTTTCTTCGCCTGAGGCACCATCGTCGGAGCATCATCGGAGAACCTGACC
* * * *
19739697 GACGGTATTGGGATTCCGGCGATCGGGGGGTC
838 GACGGCATTGGGGTTCCGACGATCGGGGGGCC
* *
19739729 GGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
19739794 CTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
19739859 GTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
19739924 GAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCACGACTACCAAGTTTG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * *
19739989 GGGCCAAAAATCCTTCCCAAAAAATTGTTAAAAATCTGGAACCGTAAAAAGTTTCAAAAATCTTG
261 GGGCCAAAACTCCTT-CCAAAAAATT-TTAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATG
* * * * *
19740054 AAAAATAGAAAACGAATCGTATTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTATATGA
324 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* ** * * *
19740119 ATTTACAAGCCACAAAAATGGCATTGGCACCCAGTAATATGAAGATATGCCTAAACCCACTTACC
389 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
19740184 ACCCTATCGATCCATGGCTTGCACATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCACTC
454 ACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTG--C-C-C
* **
19740249 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCAAA
515 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
** * * * * * *
19740314 TTGAGGGTTGCGGCAGCTGGATCAACAGCACGCAGAAGGGGACCCGATCGATTCTCGGCTTGAGC
580 CCGAGGGTTGCAGCAGCAGGATCAACAGCACGCAGAGGGGGACCCG-TCGATCCCCGACTTGAGC
** *
19740379 ATCCCCCCCTCTTACCGGCTGAGCGCCCGA-ACGCTCGTTTCGTAGGTTGACTTAGGCATACAGA
644 ATCCCCCCCTCTGGCCGGCTGAGCGCCC-ACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
* * * * * ** *
19740443 GTTCATTCCTAGTCTACGATCAGACCAGACCGAGGATTGCGATAGCACATGTTGGGCTCGAGCAT
708 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAT
* * * * *
19740508 GTGCTGGTGTCGTATTTTTCTTCGCCTG-GGCGCTATCATCGGAGCATCACCGGGGAACCTGACC
773 GTGCTGGTGTCGTATTTTTCTTCGCCTGAGGCACCATCGTCGGAGCATCATCGGAGAACCTGACC
*
19740572 GACGGCATTGGGGTTCCAACGATCGGGGGGCC
838 GACGGCATTGGGGTTCCGACGATCGGGGGGCC
19740604 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
19740669 CTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
19740734 GTGGCCATGAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* **
19740799 GAGTTTTTATCTGAATTTTTTTGTAAATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
19740864 GGGCCAAAACTCCTTCCAAAAAAGTTTAAAAAATC-CGGAACCGCAAAAAGTTTTGAAAAA-CGT
261 GGGCCAAAACTCCTTCCAAAAAA-TTTTAAAAATCTC-GAACCGCAAAAAG-TTTCAAAAATCAT
* * *
19740927 AAAAAATAGAAAACGAGTCATCTTGCCATTAAAAC-TCACATGAAGGCTTAAGGGACCATTGTAT
323 GAAAAATAGAAAACGAGTCATCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * **
19740991 GAATTTACAAGCAATAAAAATGGCATTGGCATGTAGAAATATGCAGATGTGTGTAAACCCACCTA
387 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
19741056 CCACCCTATCGATACATGACTTGCGCATCCCGTCTCTCTGGTCGGCGTA--GCAC-CC-GCCCGC
452 CCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGC
* * *
19741117 CCGCTCTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACC
517 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* *** * *
19741182 GAGGGTTGCAACCA-CAGGATCTGGAGCACACAGAGGGGGACCCGGCTGATCCCCGACTTGCA-C
582 GAGGGTTGC-AGCAGCAGGATCAACAGCACGCAGAGGGGGACCCGTC-GATCCCCGACTTG-AGC
* * * * * * * *
19741245 ATCCTGCCCCTCTGGCCAGCTGAGCGGCCAGACTCTCATTTCGTGGGTTGACTTAGGCAAACGGA
644 ATCC-CCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
*
19741310 GTTCATTCCCAGTCTAATATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAT
708 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAT
* * * *
19741375 GTCCTGGTGCCGTATTTTTCTTCACC-GAGGCACCATCGCTC-AAGCAT-AGTCGGAGAACCTGA
773 GTGCTGGTGTCGTATTTTTCTTCGCCTGAGGCACCATCG-TCGGAGCATCA-TCGGAGAACCTGA
* * * * *
19741437 CCGGCGGCATTAGGGTTTCGACGATCGGGGCCGTCGG
836 CCGACGGCATTGGGGTTCCGACGATCGGGG--GGC-C
19741474 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
19741539 CTCATCAAATCTTGAGAACTCACACCCCCTTAAAGCGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
19741604 GTAGCCATTAAAGTGTCCGAAACGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
19741669 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * * * *
19741734 GGGGCAAAACTTCTTCTGAAAAACTTTTAAAAAATCTCGAACTGC-AAAAGTATCAAAAATCGTG
261 GGGCCAAAACTCCTTC-CAAAAAATTTT-AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATG
* * *
19741798 AACAATAGAAAAC-ATCTCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
324 AAAAATAGAAAACGA-GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
19741862 AATTTACAAGCTATAAAAATGGCTTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
388 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* ** * * *
19741927 CACCCTATCGATCCAGGGCTTGCGCATCCCGTCTCTCTGGATGGCGTAGTGCCCACCAGCCCGTC
453 CACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCC
* * * * * *
19741992 CGCTCGTTTCATCGGTTGTCTTAGGCATACGAAGTTCATTCCCAGTTTAAGATCAGACCGGATCA
518 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* ** * * * *
19742057 AGGGTTAC-GACAGCAGGATTGACAACATGTAGAGGGGGACCCAGTCGATCCCCGACTTGCGCAT
583 AGGGTTGCAG-CAGCAGGATCAACAGCACGCAGAGGGGGACCC-GTCGATCCCCGACTTGAGCAT
* * **
19742121 CCCGCCCCTTTGGCCGGCTGAGCGCCCACACGTTCGTTTCGTGTATTGACTTAAGGCATAC-GAA
646 CCC-CCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTT-AGGCATACAG-A
* * * * * * *
19742185 G-TCATT-CCAGTCTAA-ATTGGA-CGGAACTAGGGTTGCGGTAGGGCACATGCTCGGCTGGGGC
708 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCA--GCACATGCTGGGCTCGAGC
* * * *
19742246 ATCTGCTAGTG-C-TACATTTT-TTCG--TGAGGCACCATCGTCGGAGCATCATCGGAGAACTTG
771 ATGTGCTGGTGTCGTA-TTTTTCTTCGCCTGAGGCACCATCGTCGGAGCATCATCGGAGAACCT-
* *
19742306 GTACCGGCGGCATCGGGGTTCCG-CGATTCGGTGGGGCC
834 G-ACCGACGGCATTGGGGTTCCGACGA-TCGG-GGGGCC
19742344 GGGAGGGTGTGCGCACATGAT-TGCGATGCGGTGCTGGTAC-TGG-CCTTATATTGGCCCCCTAT
1 GGG-GGGTGTGCGCACATGATGTGCGATG-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
19742406 CCCTCATCAAACCTCTAGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGC
64 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
19742471 CAGTAGCTATTAAAGTGTCTAAAATGGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACT
129 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
19742536 TTGAGTTTTTAGCTGAATTTATTTGTGCATGCCAACAAAAATAAAAGGATCACCTCTACCAAGTT
194 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
19742601 TGGGGCCAAAA-TCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGCTTCGAAAATCA
259 TGGGGCCAAAACTCC-TTCCAAAAAATTTT-AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCA
19742665 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
322 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
19742730 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAG-AATATGAAGATGTGCCTAAACCCACCTA
387 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
19742794 CCACCCTATCGATCCAAGGCTTGCGCATCCCGGCTCTCTGGCCGGGGTAGTGCCCGCCTGCCCGC
452 CCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGC
* *
19742859 CCACTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
517 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* *
19742924 TAGGGTTGCGGCAGCA
582 GAGGGTTGCAGCAGCA
19742940 CATACTGGGT
Statistics
Matches: 2821, Mismatches: 323, Indels: 132
0.86 0.10 0.04
Matches are distributed among these distances:
865 1 0.00
866 118 0.04
867 295 0.10
868 522 0.19
869 338 0.12
870 469 0.17
871 78 0.03
872 39 0.01
873 39 0.01
874 332 0.12
875 475 0.17
876 114 0.04
877 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (869 bp):
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCCAAAACTCCTTCCAAAAAATTTTAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAA
AAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGC
TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
GTTGCAGCAGCAGGATCAACAGCACGCAGAGGGGGACCCGTCGATCCCCGACTTGAGCATCCCCC
CCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGT
GTCGTATTTTTCTTCGCCTGAGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCAT
TGGGGTTCCGACGATCGGGGGGCC
Found at i:19743982 original size:726 final size:715
Alignment explanation
Indices: 19742321--19744377 Score: 2922
Period size: 726 Copynumber: 2.9 Consensus size: 715
19742311 GGCGGCATCG
19742321 GGGTTCCG-CGATTCGGTGGGGCC-GGGAGGGTGTGCGCACATGAT-TGCGATGCGGTGCTGGTA
1 GGGTTCCGACGA-TC-G-GGGGCCAGGG-GGGTGTGCGCACATGATGTGCGATG-GGTGCTGGTA
* *
19742383 CTGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAGCTCACACCCCCTTAAAGAGCA
61 CTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
* * * *
19742447 TTTGAGATTTTACAGGTTTGCCGCCAGTAGCTATTAAAGTGTCTAAAATGGGGACACTTTCTTCA
126 TTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCA
*
19742512 AATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTATTTGTGCATGCCAACAAAAA
191 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTATTTGTGCATGCCAACAAAAA
* * *
19742577 TAAAAGGATCACCTCTACCAAGTTTGGGGCCAAAATCCTTTCGAAAAAATTTTAAAAAATCTCGA
256 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCTTTCAAAAAAATTTTAAAAAATCTCGA
* * *
19742642 ACCGCAAAAAGCTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGT
321 ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGT
* *
19742707 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG-AATAT
386 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
* *
19742771 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGGCTCTCTGGC
451 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * * *
19742836 CG-G--G-GTAGTGCCCGCCTGCCCGCCCACTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTC
516 CGCGTAGTGTAGCGCCCGCCCGCCCGCCCACGCGTTTCGTCAGTCGGCGTAGGCATACGGAGTTC
* * *
19742897 ATTCCCAGTCTAAGATCAGACCGGACCTAGGGTTGCGGCAGCACATACTGGGTTCAGGCATGTGC
581 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATACTGGGCTCAGGCATGTGC
** * * * * **
19742962 TGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGG
646 TGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCAGAGAATCACCGGAGAACCTGACCGACAA
*
19743027 CATTG
711 CATTA
* * *
19743032 GGGTTCCGACGATCGGGGGGCTGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTTGA-TG
1 GGGTTCCGACGATCGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG-T-ACTG
*
19743096 GCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
64 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
19743161 GAGATTTTACAAGTTTGCTAGCAGTAGCCATTAAAGTGTTTAAAATGGGGACACTTTTTTCAAAA
129 GAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
* **
19743226 GTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTATTTGTGCATTTCAACAAAAATAC
194 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTATTTGTGCATGCCAACAAAAATAC
* *
19743291 AAGGATCACGTCTACCAAGTTTGGGACCAAACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACC
259 AAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCTTTCAAAAAAATTTTAAAAAATCTCGAACC
* * *
19743356 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAA
324 GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAA
* *
19743421 GGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAAATGAA
389 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAA
* * *
19743486 AATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGACCGA
454 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-
* * * *
19743551 CGTAGTGCTCGGCCGCCCGCCCGCCCGCCCGCCCGCATGTTTTGTCGGTCGGCGTAGGCATACGG
518 CGTAGTG-T-AG-CGCCCGCCCGCCCG-CC-CACGC--GTTTCGTCAGTCGGCGTAGGCATACGG
* * **
19743616 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGTTGGGCTCAGGCA
576 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATACTGGGCTCAGGCA
** ***
19743681 TGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCATCGCCAGAGAATCGTTGGAGAACCTGACC
641 TGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCAGAGAATCACCGGAGAACCTGACC
19743746 GACAACATTA
706 GACAACATTA
19743756 GGGTTCCCG-CGATCGGGAGGCCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
1 GGGTT-CCGACGATCGGG-GG-CCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC-
19743820 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
62 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
*
19743885 TTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
127 TTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAA
* * * * *
19743950 ATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGATTTTTTTTATGCATGCCAACAAACAT
192 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTATTTGTGCATGCCAACAAAAAT
* * * ** *
19744015 ACAAGGATCACGTTTACCAAGTATGGGGCAAAAAGACTTTCAAAAAAATTTTAAAAAATCCCGAA
257 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCTTTCAAAAAAATTTTAAAAAATCTCGAA
* * *
19744080 CCACAGAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTG
322 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTG
*
19744145 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATG
387 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
* *
19744210 AAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCC
452 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * * * * *
19744275 GGCGTAGTG-A----CCACCCGCCTGCCCGCTCGTTTCCTCGGTTGGCTTAGGCATACGGAGTTC
517 -GCGTAGTGTAGCGCCCGCCCGCCCGCCCACGCGTTTCGTCAGTCGGCGTAGGCATACGGAGTTC
* * * * * *
19744335 ATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTGTGGCAGCA
581 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
19744378 GGATCGATAG
Statistics
Matches: 1202, Mismatches: 119, Indels: 47
0.88 0.09 0.03
Matches are distributed among these distances:
709 29 0.02
710 15 0.01
711 361 0.30
712 69 0.06
714 68 0.06
716 4 0.00
717 3 0.00
718 10 0.01
719 1 0.00
720 12 0.01
721 2 0.00
722 3 0.00
724 156 0.13
725 6 0.00
726 462 0.38
727 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (715 bp):
GGGTTCCGACGATCGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTATTTGTGCATGCCAACAAAAATACAA
GGATCACGTCTACCAAGTTTGGGGCCAAAATCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGC
AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGCGT
AGTGTAGCGCCCGCCCGCCCGCCCACGCGTTTCGTCAGTCGGCGTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATACTGGGCTCAGGCATGTGCTGGTG
CCACATTTTTCTTCACCGGGGCACCATCGCCAGAGAATCACCGGAGAACCTGACCGACAACATTA
Found at i:19744510 original size:26 final size:26
Alignment explanation
Indices: 19744480--19744558 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
19744470 GTTGACTTAG
19744480 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19744506 GCATATGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19744532 GGATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19744558 G
1 G
19744559 ATCGGACCAA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19745445 original size:26 final size:26
Alignment explanation
Indices: 19745409--19745461 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19745399 GTTGACTTAG
*
19745409 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19745435 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19745461 G
1 G
19745462 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19746702 original size:896 final size:896
Alignment explanation
Indices: 19743608--19747076 Score: 4611
Period size: 896 Copynumber: 3.8 Consensus size: 896
19743598 GTCGGCGTAG
* ** *
19743608 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * ***
19743673 CTCAGGCATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCATCGCCAGAGAATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* ** * *
19743738 ACCTGACCGACAACATTAGGGTTCCCG-CGATCGGGAGGCCCAGGGGGGTGTGCGCACATGATGT
131 ACCTGACCTACGGCATTGGGGTT-CCGACGATCGGG-GGGCCA-GGGGGTGTGCGCACATGATGT
*
19743802 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCAAGAACTCA
**
19743867 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
*
19743932 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGATTTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
* * *** *
19743997 ATGCATGCCAACAAACATACAAGGATCACGTTTACCAAGTATGGGG-CAAAAAGACTTTCAAAAA
388 ATGCATGCCAACAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * *
19744061 AATTTTAAAAAATCCCGAACCACAGAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCATCT
452 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCATCT
19744126 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
19744191 ATTGGCACATAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
582 ACTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
19744256 GCATCCCGTCTCTTTGGCCGGCGTAGTGACCACCCGCCTGCCCGCTCGTTTCCTCGGTTGGCTTA
647 ACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* ** *
19744321 GGCATACGGAGTTCATTCCTAGTCTAAGATCGGA-TCGGA-CTGAGGGTTGTGGCAGCAGGATCG
712 GGCATACGGAGTTCATTCCTAGTCTAAGATCGGACT-AGACCT-AGGGTTACGTCAGCAGGATCG
* * * * * *
19744384 ATAGCATGTAGA-GTGGACCCGATCGATCCTCGGCTTGCGTATCTCGTCCCTCTGGCCGGCTGAG
775 ACAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCG-CCCTCTGGCCGGCTGAG
*
19744448 AGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
839 AGCCCGCACGCTCGTTTCCTGGGTTGAC-T-----TA--G-G---A-----A---T--GC--A--
19744513 GAGTTCATTCAC-AGTCTAA
878 GAGTTCATTC-CTAGTCTAA
* * *
19744532 GGATACGGAGTTCATTCCCAGTCTAAGATCGGACC-AAGCCGAGGGTTACGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CCGAGGGTTACGGCAGCACATGCTGG
*** *
19744596 GCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCGTCGCAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * *
19744661 AACCTGACCTACGGCATTGGGGTTCCGATGATCGAGGGGGCCGGGGGGTGTGCGCGCATGATGTG
130 AACCTGACCTACGGCATTGGGGTTCCGACGATCG-GGGGGCCAGGGGGTGTGCGCACATGATGTG
* * *
19744726 CAATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
19744791 ACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
** * *
19744856 GGGGACACTTTTTTTGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCGATTTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTA
*
19744921 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAGCTCCTTCCAAAAAA
389 TGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * *
19744986 ATTTTAAAAAATAC-CAAACCGTAAAAAGTTTCAAAAATAGTGAACAATAGAAAATGAGTCGTCT
453 ATTTTAAAAAAT-CTCGAACCGCAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCATCT
* *
19745050 TGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGT
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
19745115 ACTGGCACAAAGAAATATAAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCACGGCTTGC
582 ACTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * **
19745180 ACATCCCTTCTCTCTGGTCGGCGTAGTGCCCGCCTGCCCGTCCGTCCGCTCGTTTCGTTAGTTGG
647 ACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C--CCGCTCGTTTCGTCGGTTGG
* * * * * * * *
19745245 CTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGAACCAAACCGACGGTTACGGT-AGCAGGA
708 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACTAGACCTAGGGTTAC-GTCAGCAGGA
* * * * * * * ***
19745309 TTGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGACTAATGCATCCCGCCCCTCTGGCCGGCT
772 TCGACAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCG-CCCTCTGGCCGGCT
* * * *
19745374 GGGCA-CCCGCACACTCGTTTCCTGGGTTGACTTAGGCATACAGAGTTCATTCCCT-GTCTAA
836 GAG-AGCCCGCACGCTCGTTTCCTGGGTTGACTTAGGAATGCAGAGTTCATT-CCTAGTCTAA
* * * *
19745435 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGAGTTACGGTAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* ** * *
19745500 CTCGAGCATGTGCTGGTGCTTCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGCC-GAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
19745564 ACCTGACCTGCGGCATTGGGGTTTC-AGCGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTA
131 ACCTGACCTACGGCATTGGGGTTCCGA-CGATCGG-GGGGCCAGGGGGTGTGCGCACATGATGTG
**
19745628 CGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
19745693 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
19745758 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGATGATTTTTTGTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTA
* *
19745823 TGCATGCCAACAAAATA-AAGGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
** *
19745887 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCA-TGAAAAATAGAAAACGAGTCGTCT
453 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCATCT
*
19745951 TGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * * **
19746016 ACTGGCATGTAGAAATATGAAGATGTGCCAAAAGCCACCTACCACCCTATTGATCCATAGCTTGC
582 ACTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * *
19746081 ACATCCCGTCTCTCTGGAAGGCGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTTGGTTGGCTTA
647 ACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
19746146 GGCATATGGAATTCATTCCTAGTCTAAGATTGGACTAGACCTAGGGTTACGTCAGCAAGATCGAC
712 GGCATACGGAGTTCATTCCTAGTCTAAGATCGGACTAGACCTAGGGTTACGTCAGCAGGATCGAC
19746211 AGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCTTCTGGCCGGCTGAGAG
777 AGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCC-TCTGGCCGGCTGAGAG
* *
19746276 CTCGGACGCTCGTTTCCTGGGTTGACTTAGGAATGCAGAGTTCATTCCTAGTCTAA
841 CCCGCACGCTCGTTTCCTGGGTTGACTTAGGAATGCAGAGTTCATTCCTAGTCTAA
* * *
19746332 GCATACGGAGTTCATTCCCAGTCTAAGAGCGGACCGGACTGA-GGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
19746396 CTCGGGCATGTGCTGGTGCCCCATTTTTCTTCATCGGGGCACCATCGTTGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * *
19746461 ACCTGA-CTGGCGGCATTGGTGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGT
131 ACCTGACCT-ACGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
* * * * *
19746525 GATGGGTGTTGGTACCTGGCCCTTATATTCACCCCCTATCCCTCATCAAACCTCGAGAATTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * * * * *
19746590 CCCCCTTAAGGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTTAAATT
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
19746655 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-TTTTTTTAT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTAT
* ***
19746719 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGCAAAAA
390 GCATGCC-AACAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
*
19746784 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCA-TGAAAAATAAAAAACGAGTCAT-TT
454 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCATCTT
* * *
19746847 CGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTGCAAGCCATAGAAATGGC
518 -GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *** * * *
19746912 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCAATCCACGACTTGC
582 ACTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
19746977 GCATCCCGTCTCTATGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
647 ACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
19747042 GGCATACGGAGTTCATTCCTAGTCTAAGATCGGAC
712 GGCATACGGAGTTCATTCCTAGTCTAAGATCGGAC
19747077 CAAACCGAGG
Statistics
Matches: 2254, Mismatches: 258, Indels: 94
0.86 0.10 0.04
Matches are distributed among these distances:
895 16 0.01
896 593 0.26
897 240 0.11
898 1 0.00
899 1 0.00
900 3 0.00
901 255 0.11
902 250 0.11
903 129 0.06
904 2 0.00
905 1 0.00
907 1 0.00
909 1 0.00
912 1 0.00
920 1 0.00
921 1 0.00
923 249 0.11
924 364 0.16
925 3 0.00
926 1 0.00
928 75 0.03
929 65 0.03
930 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTGACCTACGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTATG
CATGCCAACAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCATCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTG
GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCTAGTCTAAGATCGGACTAGACCTAGGGTTACGTCAGCAGGATCGACAGCA
CGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCTCTGGCCGGCTGAGAGCCCGC
ACGCTCGTTTCCTGGGTTGACTTAGGAATGCAGAGTTCATTCCTAGTCTAA
Found at i:19747967 original size:708 final size:706
Alignment explanation
Indices: 19746332--19749961 Score: 4715
Period size: 708 Copynumber: 5.1 Consensus size: 706
19746322 CCTAGTCTAA
*
19746332 GCATACGGAGTTCATTCCCAGTCTAAGAGCGGACCGGACTGA-GGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC-GAGGGTTGCGGCAGCACATGCTGGG
** * *
19746396 CTCGGGCATGTGCTGGTGCCCCATTTTTCTTCATCGGGGCACCATCGTTGGAGCATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAG-A--ACC-GAG-
* *
19746461 ACCTGACTGGCGGCATTGGTGTTCCGACGATC-GGGGGGCCAGGGGGTGTGCGCACATGATGTGT
125 A-C--AC-GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
* * ** *
19746525 GATGGGTGTTGGTACCTGGCCCTTATATTCACCCCCTATCCCTCATCAAACCTCGAGAATTCACA
186 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
19746590 CCCCCTTAAGGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTTAAATT
251 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
*
19746655 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTATG
316 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTG
* ***
19746720 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGCAAAAAT
381 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
** * *
19746785 TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCAT-TTCG
446 TTTAAAAAATC-CGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT-G
* * *
19746849 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTGCAAGCCATAGAAATGGCAT
509 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
19746914 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCAATCCACGACTTGCGC
574 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
19746979 ATCCCGTCTCTATGGCCGGCGTAGTGCCCGCCCGCCCG--C-CC-GCTCGTTTCGTCGGTTGGCT
639 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCTGCTCGTTTCGTCGATTGGCT
19747040 TAG
704 TAG
* ** *
19747043 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAAACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19747108 CTCGAGCATGTCCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACC-TGAC-TG
65 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCGAGACACG
* * * *
19747171 GCGGCATTGGTGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCACACATGATGTGTGATGGGTG
130 GCGGCATTGGGGTTCCGACGATCGGGGGGGCCA-GGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
19747236 CTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
19747301 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATTGGGACACT
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
* *
19747366 TTTTTCAAATGGTCA-AAAATCTTGTACACTTCCAATTTTTAGCTGACTTTTTTTGTGCATGCCC
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-TTTTTTTGTGCATG-CC
* * * * *
19747430 AA-AAAAATACAAGGATCACTTCTACCAAATTTGGGGCCAAACCTCGTTCCGAAAAAATTTTAAA
387 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
* ** * *
19747494 AAATCTCGACCCATAAAAAGTTTTCAAAAATTGTGAAAAATAGAAAACAAGTCGTCTGGCCATGA
452 AAATC-CGAACCATAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
19747559 AACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGTATTGGCAC
515 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
19747624 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCTCGGCTTGCGAATCCCG
580 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
*
19747689 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCTGCTCATTTCGTCGATTGGCTTAG
645 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCTGCTCGTTTCGTCGATTGGCTTAG
* * * * * *
19747751 GCATATGGACTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGACAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGTTGCGGCAGCACATGCTGGG
* * *
19747816 CTCGAGCATGTGCTGGTGCCATATTTTTCTTCGTCGAGGCACCATCGTCGGAGAACC-AGA-ACG
65 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCGAGACACG
* * *
19747879 GCAGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATAATGTGCGATCGGTG
130 GCGGCATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
19747944 CTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
19748009 AAGAGCATTTGAGATTTTACAGGTTTCCTACCAGTAGCCATTAAAGTCTCTGAAATGGGGACACT
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
* * * *
19748074 TTTTTCAAATGGTCACAAGATTTTGTACACTTTGAGTTTTTTGCTGATTTTTATTGTGCATGCCA
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTT-TTGTGCATGCCA
* * * *
19748139 ATAAAAATACAGGGATCACGTCTACCACA-TTTGGGGCCAAGACGT-TTTCCAAAAAAATTTTAA
388 ACAAAAATACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAAC-TCCTTCCAAAAAAATTTTAA
*
19748202 AAAATCCGGAACC-TCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATG
451 AAAATCC-GAACCAT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
19748266 AAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
514 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * * * *
19748331 TGAAGAAATATGAAGATGTGCCTAAACCCACGTACCACGCTATTGATACAAGGCTTGCACATCCC
579 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
19748396 GTCTCTCTGGTCGGTGTAGTGCTCGCCCGCCCGCCCACCTGCTCGTTTTGTCGTTTGGCTTAG
644 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCTGCTCGTTTCGTCGATTGGCTTAG
* *
19748459 GCATACGGAGTTCATTCCCGGTCTAAGATCGGACCGGATCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGTTGCGGCAGCACATGCTGGG
* *
19748524 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGAAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCG-GG-------G-C--ACCATCGTCGGAG-
* * * *
19748589 ACCTAACCGACGGCATTGGGGTTCCGACGGCATTGGGGTTCCAACGATCGGGGGGGCTAGGGGGT
118 ----AACCGA-GACA---------CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGT
* * * *
19748654 GTGCGCACATGATGTGCGATGGGCGCTGGTACTTGGCCCTTATATTGGCCCTCGATCTCTCATCA
169 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
19748719 AACATCAAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
234 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
19748784 TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTT
299 TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * ****
19748849 TAGCTGAATTTTTTCGTGCATGCCAACAAAAATACAATGATCACATCTACCAAGTTTGGATAGAA
364 TAGCTG-ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
*** **
19748914 AACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATCATGAAAAATA
428 AACTCCTTCCAAAAAAATTTTAAAAAAT-CCGAACCATAAAAAGTTTCAAAAATCATGAAAAATA
19748979 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCT-TGAATTTAC
492 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG-TATGAATTTAC
* *
19749043 AAGCCATAAAAATTGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATA
556 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * * * *
19749108 TCGATCCACAGCTTGCGCATGCCGTCTCTCTGGCCGGCATACTGCCTGCCCGCCTGCCCGCATGC
621 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCTGC
** * *
19749173 TCGTTTTATCAATTCGCTTAG
686 TCGTTTCGTCGATTGGCTTAG
* * * * *
19749194 GCATACGGAATTCATTCCCAGTCTAAGATCGGACCAGACTAAGAGTTGCGGCAGGACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC-GAGGGTTGCGGCAGCACATGCTGGG
* * *
19749259 CTCGGGCACGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
65 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAG-AAC-C--GAG-
* * * *
19749324 ACCTGACCGGTGGCATTAGGGTTCCGATGATCGGGGGGGCCGGGGGCGTGTGCGCACATGATGTG
125 A-C--A-CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGG-GTGTGCGCACATGATGTG
* *
19749389 CAATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
185 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
19749454 CCCCCCTTATAA-AGCATTTGAGATTTTACAAGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAA
250 ACCCCCTTA-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
** *
19749518 TAAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGATTTTTTTT
314 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-TTTTTTT
* *
19749583 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCTTTCCAATAA
378 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA-AA
* * * *
19749648 AAAATTTAAAAAATCCCAAACAGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTC
442 AAATTTTAAAAAATCCGAACCA-TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
19749713 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
506 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
19749778 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACGAACCTATCGATCCACAGCTTG
571 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
19749843 CGCATCCCGTCTCTCTAGCCGACAG-AGTGCCCGCCCGCCCGTCCACCTGCCCACCCGCTCGTTT
636 CGCATCCCGTCTCTCTGGCCGGC-GTAGT----GCCCGCCCG--C-CC-GCCCACCTGCTCGTTT
*
19749907 CGTCGGTTGGCTTAG
692 CGTCGATTGGCTTAG
* * * *
19749922 CCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACG
19749962 GAAGGTTGTA
Statistics
Matches: 2559, Mismatches: 282, Indels: 140
0.86 0.09 0.05
Matches are distributed among these distances:
701 23 0.01
702 38 0.01
703 252 0.10
704 190 0.07
705 2 0.00
706 2 0.00
707 3 0.00
708 639 0.25
709 106 0.04
710 2 0.00
711 37 0.01
712 68 0.03
716 1 0.00
717 1 0.00
718 34 0.01
719 261 0.10
720 201 0.08
721 1 0.00
722 1 0.00
723 2 0.00
724 25 0.01
725 1 0.00
726 4 0.00
727 3 0.00
728 56 0.02
734 5 0.00
735 562 0.22
736 39 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (706 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCGAGACACGG
CGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
CCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCTGCTCGTTTCGTCGATTGGCTTAG
Found at i:19748617 original size:17 final size:17
Alignment explanation
Indices: 19748595--19748630 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
19748585 GAGAACCTAA
19748595 CCGACGGCATTGGGGTT
1 CCGACGGCATTGGGGTT
19748612 CCGACGGCATTGGGGTT
1 CCGACGGCATTGGGGTT
19748629 CC
1 CC
19748631 AACGATCGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.11, C:0.28, G:0.39, T:0.22
Consensus pattern (17 bp):
CCGACGGCATTGGGGTT
Found at i:19750117 original size:26 final size:26
Alignment explanation
Indices: 19750081--19750133 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19750071 GTTGACATAG
19750081 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19750107 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19750133 G
1 G
19750134 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19751022 original size:26 final size:26
Alignment explanation
Indices: 19750986--19751038 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19750976 GTTGACTTAG
*
19750986 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTATAA
*
19751012 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTACCAGTATAA
19751038 G
1 G
19751039 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTATAA
Found at i:19751165 original size:905 final size:897
Alignment explanation
Indices: 19749194--19754332 Score: 6487
Period size: 905 Copynumber: 5.7 Consensus size: 897
19749184 ATTCGCTTAG
* * * * *
19749194 GCATACGGAATTCATTCCCAGTCTAAGATCGGACCAGA-CTAAGAGTTGCGGCAGGACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATC-GAGGGTTGCGGCAGCACATGCTGG
* * * *
19749258 GCTCGGGCACGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * *
19749323 AACCTGACCGGTGGCATTAGGGTTCCGATGATCGGGGGGGCCGGGGGCGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
19749388 GCAATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * *
19749453 CCCCCCCTTATAA-AGCATTTGAGATTTTACAAGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAA
260 CACCCCCTTA-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
** * *
19749517 ATAAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGATTTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
19749582 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCTTTCCAATA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA-A
* * * *
19749647 AAAAATTTAAAAAATCCC-AAACAGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCG
453 AAAATTTTAAAAAATCCCGAACCA-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
19749711 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
19749776 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACGAACCTATCGATCCACAGCT
582 GGCATTGGCA-TCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCT
* *
19749841 TGCGCATCCCGTCTCTCTAGCCGACAG-AGTGCCCGCCCGCCCGTCCACCTGCCCACCCGCTCGT
646 TGCGCATCCCGTCTCTCTGGCCGGC-GTAGTGCCCG--CG-CCG--C-CC-G----CCCGCTCGT
* * * *
19749905 TTCGTCGGTTGGCTTAGCCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACGGAAGGTTG
699 TTCGTCGGTTGGCTTAG-CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTG
** * * * * * * *
19749970 TAGTAGCAA-GATC-GACAGCACACAGAGTGAGACCCGGGCGATCCCCGGCTTGTGCATCCCACC
762 CGGCAG-AAGGATCAG-CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCC
* * * * *
19750033 CCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTTGTGGGTTGACATAGGCATACGGAGTTCATTC
825 CCTCTGGCCGACTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-
19750098 CCAGTCTAA
889 CCAGTCTAA
* * * * * * * *
19750107 GCATACGGAGTTTATTCCCAGTCTAAGATCGGATCAGACCCAAGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
19750172 CTCGGGCATGTGATGGTGCCGCATTTTTTTTTG-CTGGGGCACCATCGTCGGAACATAGCCTGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAG
* *
19750236 AACCTGACAGGCGACATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGGGTGTGCGCACATGAT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGGTGTGCGCACATGAT
*
19750300 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
* *
19750365 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAATGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
19750430 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGGACACTTCGAGTTTTTAGATGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
19750495 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGTGGCCAAAACTCCTTCCGAA
388 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** * *
19750560 AAAATTTTAAAAAATCCCGTGCCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGT
453 AAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * * *
19750625 CTTGCCACGAAACTTCACGTGAAGGTTTAAGGGATCATTGTATTAACTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
19750690 GCATTGGAACAT-AGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCAATCCACAGCT
583 GCATTGG--CATCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCT
* * * *
19750754 TGCGCATCCCATCTCTTTGGTCGGTGTAGTGCCCGTTCGCTCGCCCGCCCGCTCGTTTCGTCGGT
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--CGC-CGCCCGCCCGCTCGTTTCGTCGGT
* * ** * *
19750819 TGGCTTACGCATATGGAGTTCATTCCCAGTCTAAGGTTGGACCAGATCGAGGGTTGTGCCAGAAG
708 TGGCTTA-GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGAAG
* * *
19750884 GATCAGCAGCGA-GTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCTTCTGGCCG
771 GATCAGCAGC-ACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
19750948 ACTGAGCGCTCGCGCGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTACCAGTCTAA
835 ACTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAA
*
19751012 GCATACGGAGTTCATTCCCAGTATAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19751077 CTCGGGAATGTGCTAGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCAGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** *
19751142 ACCTGACAGGCGGCATTGGGGTTCCGGTGATCGGGGGGGTCGGGGGTGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GGTGTGCGCACATGATGT
* *
19751207 GCGATGGGTGCTGGTACTTGGCCCTTGTATTGGTCCCCTATCCCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* *
19751272 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19751337 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGGACACTTCGAGTTTTTAGATGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
19751402 GTGCGTGCCAACAAAAATACAAGGATCATGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
19751467 AATTTTAAAAAATCCCGTACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCT
455 AATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
19751532 TGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAACTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** *
19751597 ATTGGAACA-CAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATGAACGGCTTG
585 ATTGG--CATCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
* * * * * * *
19751661 CGTATCTCGTCTCTCTGACCGACGTAGTGCCCACCCGCCCGCCCGCCCGTTCGTTTCGTCGATTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-CGCG-CCGCCCGCCCGCTCGTTTCGTCGGTTG
* * *
19751726 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATC-GAACCGAGGGTTGCGGCA-ACTG
710 GCTTA-GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-A-CGAGGGTTGCGGCAGA-AG
* * ** * * *
19751789 GATCAGTAGCACGTAGAGGGGGACCCGGTCGATCTTCAGCTTTCGCATCCTGCCCCTCTGGCCGA
771 GATCAGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
* * *
19751854 CTGAGCGCCCGTACATTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 CTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAA
* * ** **
19751917 GCATATGGAGTTCATTCCCAGTCTAAGATCGAATGGGATCGAGGGTTGTAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
* * **
19751982 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCA-CGTCGGAGCATCGCTTGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * ** *
19752046 ACCTGACCGACAGCATTGTGGTTCCGACGATC-GAGAAGCCGGGGGTGGCGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GGTGTGCGCACATGATGT
* *
19752110 TCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* *
19752175 TACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19752240 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTCTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
19752305 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * * *
19752370 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGCCATCT
455 AATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
19752435 TGCAATGAAACTTTACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
19752500 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCTTATAGATCCACAGCTTGC
585 ATTGGCAT-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
* * *** * * * *
19752565 GCATCCTGCCTCTCTAATCGGCGTAGTGCCCGC-CCGCCCGCCCACTCATTTTGTCGATTGGCTT
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * *
19752629 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGACAGCAGGATCAG
714 A-GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGAAGGATCAG
* * * * * ** * * *
19752694 CAGCATGCAGAGGGGGACACAGCCGATCCCCAGCTTATGCATCCCGCCCCTCTCGCTGACTGAAC
777 CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
*
19752759 GCCCGCACGTTCATTTCGT-GG--G---T-----T---GA---C-TT--AG-----
842 GCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAA
* * * * **
19752790 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGATCGAGGGTTGAGGTAGGACATGCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
19752855 CTTGGGCATGAGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGTC-GAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * ** *
19752919 ACCTGACTGGCGGCATTGAGGTTCCGGTGATCGTGGGGGCC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
** * * **
19752983 CGATGGGTGCTCATACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACATTGAGAACTTGC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * * * *
19753048 TCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGGTGCCAGTAGCCATTAAAGTATTTGTAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19753113 GGGGACATTTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
326 GGGGACA-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
19753178 GTGCAAGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACCCCTTCTGAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
19753243 AATTTTGAAAAATCCCGAACCGCAAAAACTTTCAAAAATCGTGAAATATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
19753308 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCACAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
19753373 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCAT-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
* * * * *
19753438 GCATCCCGTCTCTCGGGCCAGCGTAGTGCCAGC-CCACCCGCCCGCTCGTTTCGTCGGTTAGCTT
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * *
19753502 AGCCATTCGAAGTTCATTCCCAGTCTAAGATCAGACCAGACAAAAGGTTGCGGTAGTAGGATCGG
714 AG-CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGCAGAAGGATCAG
* * * * * * * * *
19753567 CAGCAAGCAGAGGGGGACCCGGTGGATCCCCGACTTGCGCATCCCACTCTTCAGGCTGGCTGAGC
777 CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
* *
19753632 GCCCGCACGTTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
842 GCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAA
**
19753689 G-AT-C-G-G---------A--C--A-A---GA-C----CGAGGGTTATGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
* *
19753728 CTCGGGCATTTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** * *
19753793 ACCTGACCGACGGCATTGGGGTTCCG-CGATCAAGGGGGCCGGGGTGGTGTGCACACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
19753857 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTTGAGAACTCAA
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * * *
19753922 ACCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTACTCCCAGTAGCCAATAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
19753987 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
19754052 GGTATGCCAAAAAAAATACAAGGATCTCGTCTACCAAGTTTAGGGCCAAAACTCCATCTGAAAAA
391 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * *
19754117 ATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCGTGAAAAAGAGAAAACGAGTCGTCTT
456 ATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
19754182 GCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
19754247 TTGGCGTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
586 TTGGCAT-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
19754312 CATCCCGTCTCTCTGGCCGGC
650 CATCCCGTCTCTCTGGCCGGC
19754333 ATCCACAGCT
Statistics
Matches: 3705, Mismatches: 459, Indels: 164
0.86 0.11 0.04
Matches are distributed among these distances:
872 142 0.04
873 980 0.26
874 187 0.05
876 1 0.00
878 4 0.00
879 1 0.00
881 3 0.00
882 2 0.00
884 2 0.00
885 2 0.00
886 1 0.00
887 2 0.00
888 1 0.00
890 1 0.00
891 2 0.00
893 1 0.00
894 2 0.00
895 1 0.00
896 2 0.00
897 1 0.00
898 4 0.00
899 149 0.04
900 1 0.00
901 4 0.00
902 2 0.00
903 463 0.12
904 52 0.01
905 1063 0.29
906 15 0.00
907 1 0.00
909 1 0.00
910 2 0.00
911 1 0.00
912 11 0.00
913 338 0.09
914 258 0.07
915 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTGCGGCAGAAGGATCAGCAGC
ACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
GCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAA
Found at i:19751927 original size:26 final size:26
Alignment explanation
Indices: 19751891--19751943 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19751881 GTTGACTTAG
19751891 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19751917 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19751943 G
1 G
19751944 ATCGAATGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19754344 original size:35 final size:35
Alignment explanation
Indices: 19754298--19754369 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
19754288 CACCCTATCG
19754298 ATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGC
1 ATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGC
19754333 ATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGC
1 ATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGC
19754368 AT
1 AT
19754370 AGTGCCCGCC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.12, C:0.42, G:0.22, T:0.24
Consensus pattern (35 bp):
ATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGC
Found at i:19755384 original size:26 final size:26
Alignment explanation
Indices: 19755355--19755405 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19755345 TTGACTTAGG
*
19755355 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCAAGTCTAAC
19755381 CATACGGAGTTCATTCCAAGTCTAA
1 CATACGGAGTTCATTCCAAGTCTAA
19755406 GATCGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCAAGTCTAAC
Found at i:19756242 original size:26 final size:26
Alignment explanation
Indices: 19756212--19756264 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19756202 GTTGACTTAG
*
19756212 GCATACGGAGTTCA-TTCCTAGTCTAA
1 GCATACAGAGTTCATTTCC-AGTCTAA
19756238 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
19756264 G
1 G
19756265 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:19756381 original size:858 final size:882
Alignment explanation
Indices: 19754697--19756668 Score: 2522
Period size: 858 Copynumber: 2.2 Consensus size: 882
19754687 CCCTTACATT
* *
19754697 GGCCCCCTAGCCCTCAT-AAAGCCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTAC
1 GGCCCCCTATCCCTCATCAAA-CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
19754761 AGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
65 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* **
19754826 TCTTGTACACTTCAAGATTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATATGAGGATCATG
130 TCTTGTACACTTCGAG-TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATG
* *
19754891 TCTACCAAGTTTTGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCCCGAACCTCAAAAAAA
194 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCTCAAAAAAA
* *
19754956 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
259 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAA
*
19755021 GGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGCAGAAATATGAGGATGTTG
324 GGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGCAGAAATATGAAGATGTTG
* * **
19755086 CCTAAACCACCTACCACCCTATCGATCCACGGCTTTGCGCATTCCCGTCTCTCTGGCCGATTGTA
389 CCTAAACCACCTACCACCCTATCAATCCACGGCTTTGCGCATTCCCGTCTCTCTAGCCGAGCGTA
* * *
19755151 GTGCCCCCCGCCCACTCCGCACTGCCTCATTCGTCGGTTGCTTAGCATACGGAGTTCATTCCCAG
454 GTG--CCCCGCCCACTCCGCACTGCCTCATTCGTCGATGGCTTAGCATACGGAGTACATTCCCAG
* * * * * **
19755216 TCTAAGATCAGACCAGACCGAGGGTTGCTACAGCAAGATCGGCAGCACGCAGTGAGGGCCCCGGT
517 TCTAAGATCAGACCAGACCGAGGGTTACAACAGCAAGATCAGCAGCACGCAGAGAGGGACCCGAC
* * ** * * * *
19755281 CGATCCCCAGCTTGCGTATCCCGCTGCTCTGGTCGATTGAGCGCCCGTACGCTCATTTCGTGGGT
582 CGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGT
*
19755346 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACGGAGTTCATTCCAAGTCTAAGATCG
647 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACAGAGTTCATTCCAAGTCTAAGATCG
* * **
19755411 GACCAGACCGAGGGTTGTGACAACACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTT
712 GACCAGACCGAGGGTTGTGACAACACATGCAGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTT
* * * * * * *
19755476 CGCCGGGGCACCATCATCAGAGCATCGCCGGAGATCCTGACCGACGGCATTGGGGTTCCG-G-T-
777 CGCCGGGGCAACATCACCAGAGCATCACCGAAGAACCTGACCGACGGCACTGGCGTTCCGAGATC
*
19755538 GA-TC-GGG-G-G-GC-C-A-G-G-G-T-G-G-T-GTA-TC
842 GAGCCGGGGTGTGCGCACAATGTGCGATGGAGCTGGTACTC
* *
19755563 GGCCCCCTATCCCTCCTCAAACCTCGAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTACA
1 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
19755628 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
66 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * * * *
19755693 CTTGTACACTTCGAGTTTTCAACTGACTTTTTTTGTGTATGCCAACAAAAATGCAAAGATCACGT
131 CTTGTACACTTCGAGTTTT-AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
* * * * **
19755758 CTACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAAATTTTAATAAATCCCTAA-CT-GTAAAAAG
195 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCTCAAAAAAAG
** *
19755821 TTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAGCTTCACGTGAAGGCCTAAG
260 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAG
* * *
19755886 GGACCATTGTATGAATTTACAGGCCAT-AAAATTGGCATTGGCATTCAGAAATATTAAGATG-TG
325 GGACCATTGTATGAATTTACAAGCCATAAAAATT-GCATTGGCATGCAGAAATATGAAGATGTTG
19755949 CCTAAACCCACCTACCACCCTATCAATCCACGGC-TTGCGCA-TCCCGTCTCTCTAGCC-AGCGT
389 CCTAAA-CCACCTACCACCCTATCAATCCACGGCTTTGCGCATTCCCGTCTCTCTAGCCGAGCGT
* **
19756011 AGTG-CCTGCCTGC-CCGCAC-G-CTCATTTCGTCGATCGGCTTAGGCATACGGAGTACATTCCC
453 AGTGCCCCGCCCACTCCGCACTGCCTCA-TTCGTCGAT-GGCTTA-GCATACGGAGTACATTCCC
* * * * *
19756072 AGTCTAAGATCAGACCGGATCGAGGGTTACAATAGCAGGATCAGTAGCACGCAGAG-GGAGACCC
515 AGTCTAAGATCAGACCAGACCGAGGGTTACAACAGCAAGATCAGCAGCACGCAGAGAGG-GACCC
* * * * *
19756136 GACCGTTCCCCGGCTTGCGCATCCCACCCCTTTGGCCGACTGAGTGCCCGCACGCTCGTTTCATG
579 GACCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATG
* *
19756201 GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTTCC-AGTCTAAG
644 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACAGAGTTCA-TTCCAAGTCTAAG
* * *
19756265 ATCGGACCGGATCGA-GGTT-TGCAGCAGCACATGCAGGGCTCAGGCATGTGCTGGTGCCACATT
708 ATCGGACCAGACCGAGGGTTGTG-A-CAACACATGCAGGGCTCAGGCATGTGCTGGTGCCACATT
* * * *
19756328 TTTCTTCGTCGGGGCAACATCGCCGGAGCATCATCGAAGAACCTGACCGACGGCACTGGCGTTCC
771 TTTCTTCGCCGGGGCAACATCACCAGAGCATCACCGAAGAACCTGACCGACGGCACTGGCGTTCC
*
19756393 GACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGAGCTGGTACTT
836 GA-GATCGA----GCC--GGGGTGTGCGCACA--ATGTGCGAT-GGAGCTGGTACTC
19756450 GGCCCTTATATTAGCCCCGTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
1 GG--C---------CCCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
19756515 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
54 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * *
19756580 TGGCCAC-AAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTCTGTGCAAGCCAACAAAAATA
119 TGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
19756644 CAAGGATCATGTCTACCAAGTTTGG
183 CAAGGATCATGTCTACCAAGTTTGG
19756669 CTCCANNNNN
Statistics
Matches: 952, Mismatches: 101, Indels: 74
0.84 0.09 0.07
Matches are distributed among these distances:
855 4 0.00
856 11 0.01
857 18 0.02
858 283 0.30
859 4 0.00
860 1 0.00
861 8 0.01
862 17 0.02
863 21 0.02
864 142 0.15
865 6 0.01
866 219 0.23
867 4 0.00
870 3 0.00
871 1 0.00
872 1 0.00
873 2 0.00
874 1 0.00
877 1 0.00
878 1 0.00
879 1 0.00
880 1 0.00
881 1 0.00
883 1 0.00
884 1 0.00
885 1 0.00
886 3 0.00
887 3 0.00
889 1 0.00
898 72 0.08
899 119 0.12
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (882 bp):
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCTCAAAAAAAGT
TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGG
GACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGCAGAAATATGAAGATGTTGCC
TAAACCACCTACCACCCTATCAATCCACGGCTTTGCGCATTCCCGTCTCTCTAGCCGAGCGTAGT
GCCCCGCCCACTCCGCACTGCCTCATTCGTCGATGGCTTAGCATACGGAGTACATTCCCAGTCTA
AGATCAGACCAGACCGAGGGTTACAACAGCAAGATCAGCAGCACGCAGAGAGGGACCCGACCGAT
CCCCAGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGAC
TTAGGCATACGGAGTTCATTCCCAGTCTAACCATACAGAGTTCATTCCAAGTCTAAGATCGGACC
AGACCGAGGGTTGTGACAACACATGCAGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCC
GGGGCAACATCACCAGAGCATCACCGAAGAACCTGACCGACGGCACTGGCGTTCCGAGATCGAGC
CGGGGTGTGCGCACAATGTGCGATGGAGCTGGTACTC
Found at i:19759010 original size:26 final size:26
Alignment explanation
Indices: 19758981--19759033 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19758971 ACCATTCGAT
*
19758981 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
19759007 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
19759033 C
1 C
19759034 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:19759916 original size:26 final size:26
Alignment explanation
Indices: 19759886--19759938 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19759876 CCGGTCTGAT
*
19759886 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19759912 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19759938 C
1 C
19759939 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19760816 original size:26 final size:26
Alignment explanation
Indices: 19760787--19760839 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19760777 CCGATCCGAT
19760787 CTTAGACTGGGAAAAAACTCCGTATG
1 CTTAGACTGGGAAAAAACTCCGTATG
**
19760813 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAAAACTCCGTATG
19760839 C
1 C
19760840 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAAAACTCCGTATG
Found at i:19761551 original size:901 final size:901
Alignment explanation
Indices: 19758111--19761714 Score: 4765
Period size: 904 Copynumber: 4.0 Consensus size: 901
19758101 CCGGTCTGAT
* *
19758111 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * * **
19758176 CAGCGAGAGGGGCGGGATGCACAAGCTGGGGATCGGCTGGGTCCCCCTCTGCATGCTG-CTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGTCTGATC
* * *
19758240 CTGCTG-TCGTAACCCTCAGTCTGGT-TCGATCTTAGACT-GAGAATGAACTCCGTATGCCAAAG
131 CTGCTGCT-GCAACCCTCATTCTGGTCT-GATCTTAGACTAG-GAATGAACTCCGTATGCCTAAG
* * * * * *
19758302 CCAATCAACAAAACGAGCGGGCGGGC--G--GGCACTACGTCGATCAGAGAGGCAGGATGCGCAA
193 CCAACCGACAAAACGAGCGGGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAA
* * *
19758363 GCCGTGGATCTATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* *
19758428 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATTGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * **
19758493 -AGCCCGTTTTCTATTTTTCACGATTTTTGAAACCTTTCGCGGTTCGAGATTTTTTAAAATTTTT
388 GA-CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
19758557 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
19758622 ACAATTCAGCTAAAAACTCAAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
19758687 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGA
582 CAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * * *
19758752 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATACGGGCCAAATACTAGCACCCATTGAACA
647 GTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
19758817 TCATGTGCGCACACCACCCCCGGCCCTCCCGATCGCCGGAACCACAATGCCGTCGGTCAGGTTCT
712 TCATGTGCGCACA-C-CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * *
19758882 CCGGCGATGCTCCGACG-TGGTGCCCCGG-TGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
775 CAGGCGATGCTCCGACGATGGTGCCCCGGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * *
19758945 TAGCATGTGCTG-CTGCAACCCTCGATACC-ATTCGATCTTAGACTGGGAATGAACTCCATATG
840 CAGCATGTGCTGTC-GCAACCCTAGGT-CCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
19759007 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* *
19759072 CGGCCAGAGGGGCGGGATGCGGAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCT-ACTGAT-
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGTCTGATC
* * * * * *
19759135 CTAGTTGCCGCAACCCTCGGTT-TGGTCTGATCTTAGACTGGGAATGAGCTCTGTATGCCTAAGC
131 CT-GCTGCTGCAACCCTC-ATTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
* * * *
19759199 CAACCGACGAAACGAACGAGCGGGCGGGTGGGCAGGCACTACGCCGGCCAGAGAGACGTGATACG
194 CAACCGAC--AA--AACGAGCGGGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCG
* ** * * *
19759264 TAAGCCGTTCATCGATAGGGTGGTAGCTGGGTTTAGGGACATCTTCATATTTCTGTGTTG-CAAT
255 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG-TGCCAAT
* * * *
19759328 GCCATTTTTATGGCTTGCAAGTTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCA
319 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* ** * *
19759393 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATT
384 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* * * *
19759458 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGTTAGACATGATCCTTTTATTTTTGTTGGCATGCAT
449 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
19759523 AAAAAAATTCATCTAAAAACTCGAAGTGTCCAAGATTTTGTGACCATTTGAAAAAAGTGT-TCCA
514 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
19759587 TTTCAGACACTTTAATGGCTACT-GACAGCAAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGG
579 TTTCAGACACTTTAATGGCTACTGGA-AGC-AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
19759651 TGTGAGTTCTCAAGGTTTGATGAGGGAT-AGGGGACCAATACAAGGGCCAAGTACCAGCACCCAT
642 TGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGG-CCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * *
19759715 CGCACATCATGTGCGCACACCGCCCCTGACCCCCCCGATCGCCAGAACCTCAATGCAGCCTGTCA
706 CGCACATCATGTGCGCACACC-CCCC-GGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCA
* * *
19759780 GGTTCTCTGGCGATGCTCTGACGATGGTG-CCTGGACGAAGAAAAATGCGGCACCAGCACATGCC
769 GGTTCTCAGGCGATGCTCCGACGATGGTGCCCCGGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * * * *
19759844 CGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAGTCCGT
834 CGAGCCCAGCATGTGCTGTCGCAACCCTAGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGT
19759909 ATG
899 ATG
* * * *
19759912 CTTAGACTGGTAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGCGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * **
19759977 CTGCCAGAGGGGCGGGATGCGTAAGTCGGGGATC-AGCCGGGTCCCCCTCTACT-CACTGT-TGA
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCT-GTGTGCTGTCTGA
* * * ** * * *
19760039 TCCTCCTAGC-ACAACCCTCAATCTGGTCCAACCTTAGACTAGGAATGAACTCCATATGCATAAG
129 TCCTGCT-GCTGCAACCCTCATTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
* * * * * *
19760103 CCAACTGACGAAATGAGTGGGCGGGCGAGCGAGCAGGCACTACACCGACCAGAGAGATGGGATGC
193 CCAACCGACAAAACGAGCGGGCGGGC--G-G-GCAGGCACTACGCCGACCAGAGAGACGGGATGC
* * *
19760168 GCAAGCCGTGGATTGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTGCGTACCAAT
254 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAAT
*
19760233 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCA
319 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
19760298 AGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTGA-GGTTCGAGATTTTTTAAAATT
384 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* * *
19760362 TTTTCGGAAGGAGTTTTGGCCCGAAAGTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
449 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
19760427 AAAAAAATTCAGGTAAAAACACGGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
514 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
19760492 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
579 TTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
19760557 TGAGTTCTCGAGGTTTGATGA-GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
644 TGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
19760621 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCTGTCAGGTTC
709 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * *
19760686 TCAGGCGATGTTTCGACGATGGTGCCCCAG-CAAAGAAAAATGCGGCACCAGCACATGCCCGAGC
774 TCAGGCGATGCTCCGACGATGGTGCCCCGGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* **
19760750 CCAGCATATGCTGTCGCAACCCTAGGTCCGATCCGATCTTAGACTGGGAAAAAACTCCGTATG
839 CCAGCATGTGCTGTCGCAACCCTAGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
19760813 CTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * *
19760878 CGGCCAGAGGGGTGCGATGCGCAAGCCGGGGATCGATCGGGTCTCACTCTGTGTGCTGTC-GATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGTCTGATC
* * *
19760942 TTGCTGCTGCAACCTTTCATTC-GGTCTGATCTTAGACTAGGAATGAACTCCGTATGGCTAAGCC
131 CTGCTGCTGCAACC-CTCATTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
* * * *
19761006 AACCGACAAAACGAGCGGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
195 AACCGACAAAACGAGCGGGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGC
* * * *
19761071 TGTGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* *
19761136 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** * * * * * * *
19761201 CTCGTTTTCTATTTTTTATAATTTTTGAAGCTTTTTACTGTTTGGGATGTTTTAAATTTTTTTTG
390 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
* * *
19761266 GAAAGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAA
* * * **
19761331 AAATCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCTTATTTCA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
19761396 GACACTTTAATGGCTACTGGAAGTAAACCTGTAAAATCTCAAATGCT-TTATAAGGGGGGGTGAG
584 GACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTT-TAAGGGGGTGTGAG
* * *
19761460 TTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAGGTACCAGTACCCATTGCACAT
648 TTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
19761525 CATGTGCGCACACGCCCCCTGCCCCCCCGATCGTCGAAACCCTAATGCCACCGGTCAGGTTCTCC
713 CATGTGCGCACAC-CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT-C
** * *
19761590 A-GCGATGCTCCGACGATGGTGCCCC-GACGAAGAAAAATATGACACCAGCACGTGCCCGAGCCC
776 AGGCGATGCTCCGACGATGGTGCCCCGGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
** * * * * *
19761653 AGCATGTGCTGTCATAACTCTTA-GTCTGGTCTGATCTTAGACTGGGAATGAATTCCGTATG
841 AGCATGTGCTGTCGCAAC-CCTAGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
19761714 C
1 C
19761715 CTAAGCCAAT
Statistics
Matches: 2364, Mismatches: 291, Indels: 101
0.86 0.11 0.04
Matches are distributed among these distances:
895 2 0.00
896 165 0.07
897 188 0.08
898 81 0.03
899 138 0.06
900 74 0.03
901 470 0.20
902 21 0.01
903 94 0.04
904 663 0.28
905 461 0.20
906 7 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGTCTGATC
CTGCTGCTGCAACCCTCATTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
ACCGACAAAACGAGCGGGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCAGGCG
ATGCTCCGACGATGGTGCCCCGGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGTCGCAACCCTAGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:19762411 original size:717 final size:716
Alignment explanation
Indices: 19760970--19762431 Score: 2128
Period size: 717 Copynumber: 2.0 Consensus size: 716
19760960 ATTCGGTCTG
* * *
19760970 ATCTTAGACTAGGAATGAACTCCGTATGGCTAAGCCAACCGACAAAACGAGCGGGTGGGCGGGCG
1 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCAGGCGGGCGGGCG
* * * * *
19761035 GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGTTGGTAGGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGAGAGGGTGGTAGGTGGGTTT
* ***
19761100 AGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
19761165 CCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTTATAATTTTTGAA
196 CCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATAATTTTTGAA
* * * * * *
19761230 GCTTTTTACTGTTTGGGATGTTTTAAATTTTTTTTGGAAAGAGTTTTGACCCCAAACTTGGTAGA
261 ACTTTTTACGGTTTAGGATCTTTTAAAATTTTTTCGGAAAGAGTTTTGACCCCAAACTTGGTAGA
* *
19761295 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAAATCAGCTAAAAATTCGAAGTGTACAAG
326 CGTGATCCTTGTACTTTTTTTGGCATGCACAAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAG
* **
19761360 ATTTTGTGACCATTTGAAAAAAGTGTTCTTATTTCAGACACTTTAATGGCTACTGGAAGTAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGTAAACC
* *
19761425 TGTAAAATCTCAAATGCTTTATAAGGGGGGGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCC
456 TATAAAATCTCAAATGCTTTATAAGGGGGGGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCC
* * * *
19761490 AATATAAGGGCCAGGTACCAGTACCCATTGCACATCATGTGCGCACACGCCCCCTGCCCCCCCGA
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCACACGCCCCCTGCCCCCCCGA
* *
19761555 TCGTCGAAACCCTAATGCCACCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGACGA
586 TCGTCGAAACCCCAATGCCACCGATCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGACGA
* * * * * *** *
19761620 AGAAAAATATGACACCAGCACGTGCCCGAGCCCAGCATGTGCTGTCATAACTCTTAGTCTGGTCT
651 AGAAAAATACGACACCAGCACATGCCCGAGCCCAACATGTGCTGTCACAACCCTTAGTCCAATCC
*
19761685 G
716 A
* * ** * *
19761686 ATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAATTGACGAAACGAGCATGCGGGCGGGCG
1 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCAGGCGGGCGGGCG
*
19761751 GGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGAGAGGGTGGTTGGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGAGAGGGTGGTAGGTGGGTTT
*
19761816 AGGCACATCATTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTGAATTCATACAATGGT
131 AGGCACATC-TTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
19761881 CCCTTATGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGA
195 CCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATAATTTTTGA
* * *
19761946 AACTTTTTACGGTTTAGGATCTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAG
260 AACTTTTTACGGTTTAGGATCTTTTAAAATTTTTTCGGAAAGAGTTTTGACCCCAAACTTGGTAG
* *
19762011 ACGTGATCCTTGTACTTTTTTTGGCATGCAC-AAAAAAATTCAGCTACAAACTCGAAGTGTACAA
325 ACGTGATCCTTGTACTTTTTTTGGCATGCACAAAAAAAAATCAGCTAAAAACTCGAAGTGTACAA
19762075 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAAG-AAA
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG-AAGTAAA
*
19762139 CCTATAAAATCTCAAATGCTCTT-TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT-AGGT
454 CCTATAAAATCTCAAATGCT-TTATAAGGGGGGGTGAGTTCTCAAGGTTTGATGAGGGATAAGG-
* *
19762202 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGAGCGCACGC-CCCCCTCGGCCC
517 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCACACGCCCCCT--GCCC
* * ** **
19762266 CCTCGATCG-CTGGAACCCCAATGCCGTCGATCAGGTTCTCTGGCGATGCTCCGACGATGGTGCC
580 CCCCGATCGTC-GAAACCCCAATGCCACCGATCAGGTTCTCCAGCGATGCTCCGACGATGGTGCC
** * * * *
19762330 CCGGTGAAGAAAAATACGACACCAGTACATTCCCGAGCCTAACATGTGCTGTCGCAACCCTT-GA
644 CCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAACATGTGCTGTCACAACCCTTAG-
19762394 TCCAATCCA
708 TCCAATCCA
* *
19762403 ATCTTAGACTTGGAATGAACTCTGTATGC
1 ATCTTAGACTAGGAATGAACTCCGTATGC
19762432 TTAGACTGGG
Statistics
Matches: 662, Mismatches: 76, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
715 9 0.01
716 312 0.47
717 341 0.52
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (716 bp):
ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCAGGCGGGCGGGCG
GGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGAGAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATAATTTTTGAA
ACTTTTTACGGTTTAGGATCTTTTAAAATTTTTTCGGAAAGAGTTTTGACCCCAAACTTGGTAGA
CGTGATCCTTGTACTTTTTTTGGCATGCACAAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGTAAACC
TATAAAATCTCAAATGCTTTATAAGGGGGGGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCACACGCCCCCTGCCCCCCCGA
TCGTCGAAACCCCAATGCCACCGATCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGACGA
AGAAAAATACGACACCAGCACATGCCCGAGCCCAACATGTGCTGTCACAACCCTTAGTCCAATCC
A
Found at i:19762443 original size:26 final size:25
Alignment explanation
Indices: 19762405--19762456 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
19762395 CCAATCCAAT
*
19762405 CTTAGACTTGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTC-GTATG
19762431 CTTAGACTGGGAATGAACTCGTATG
1 CTTAGACTGGGAATGAACTCGTATG
19762456 C
1 C
19762457 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:19764255 original size:708 final size:708
Alignment explanation
Indices: 19762568--19764315 Score: 2500
Period size: 718 Copynumber: 2.5 Consensus size: 708
19762558 CCTGCTACCA
* * * * * *
19762568 CAACCCTCGGTCCGGTTCAATCTTATATTGGGAATGAACTCCGTATGCCTCAGCCAACCGATGAA
1 CAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAA
* * * * * * * * *
19762633 ATGAGCGGGCGGGCAGGTGGGCAGGCAGTATGCCGGCCAGAGAGACGGCATGGCAAGCTGTGGAT
66 ATGAGCAGGTGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATTGCAAGCCGTGGAT
*** *
19762698 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGG
131 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGG
* * * *
19762763 ATTGTAAATTCAAACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
196 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
* * * *
19762828 TCTATTTTTCATGATTTTCGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAT
261 TCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGAAG
* * * *
19762893 TTTTCTATCCAAACTTGGTAGACGTGATCATTGTATTTTTGTTGGCATGCACGAAAAAATTCAGC
326 TTTTCGACCCAAACTTGGTAGACGTGATCACTGTATTTTTGTTGGCATGCACGAAAAAAATCAGC
* * * * *
19762958 TAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
391 TAAAAACTCAAAGTGTACAAAATCTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
19763023 AATGGCTACTGGCAGTAAACCTGGAAAATCTCAAATGGTCTTTAAGGGGGTGTGAGTTCTCGATG
456 AATGGCTACTGGCAGGAAACCTGGAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * *
19763088 TTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGC
521 TTTGATAAGGGATACAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
*
19763153 ACACCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTT
586 ACACCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA---TT
** *
19763218 CGGTGATGGTGCCTCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATTTGCTGT
648 C------GGTGCCTCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGT
19763283 CG
707 CG
* * * * * * *
19763285 CAACCCTTGATCCGGTCTGATCTTAGACTGGGACTGAACTCCGTATGCCTAAGCCAAAGGACAAA
1 CAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAA
* * * * *
19763350 ACGAGTAGGTGGGCGGGCGGGCAGGCACTACACCGGCCAGAGAGACGGGATGTGCAAGCCTTGTA
66 ATGAGCAGGTGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGAT-TGCAAGCCGTGGA
* * *
19763415 TCGATAGCGTGGTACGTGGGTTTAGGCACATCTTCATATTTCTTTAG-GCCAATGCCATTTTTAT
130 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAT-GTGCCAATGCCATTTTTAT
19763479 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
* *
19763544 TTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCCAGATTTTTTAAAATTTTTTTGGAAGA
259 TTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGA
* * *
19763609 AGTTTTGGCCCCAAA-TGTGGTAGACGTGATCCCTGTA-TTTTGATTGGCATGCAC-AACAAAAA
324 AGTTTTCGACCCAAACT-TGGTAGACGTGATCACTGTATTTTTG-TTGGCATGCACGAA-AAAAA
*
19763671 TCAGCTAAAAACTCAAAGTGTACAAAATCTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGAG
386 TCAGCTAAAAACTCAAAGTGTACAAAATCTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGAC
* *
19763736 ACTTTAATGGCTACTGGTAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
451 ACTTTAATGGCTACTGGCAGGAAACCTGGAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
19763801 CGAGGTTTGATAAGGGATACAGGGCTAATATAAGGGCCAAGTACCAGCACCGATCGCACATTATG
516 CGAGGTTTGATAAGGGATACAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
19763866 TGCGCACACCCCCTCGGCCCCCCCGATCGTCGGAGCCCCAATGCTGCCGTTCTGGTTCTCCGACG
581 TGCGCACACCCCCT-GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
* *
19763931 A-TC-GTGCCTCGACGAGGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCG
645 ATTCGGTGCCTCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCG
** * *
19763993 CAACCCTCGGTCCAATCCGATCTTAGATTGGGAATGAAGTCCGTATGCCTAAGCCAATCGACGAA
1 CAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAA
* * *
19764058 ATGAGCAGATGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATTCGCAAGCCGAGGA
66 ATGAGCAGGTGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATT-GCAAGCCGTGGA
19764123 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATG
130 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATG
*
19764188 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCCAGACGACTCATT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
* * *
19764253 TTCTATTTTTCATAATTTTTGAAAACTTTTTGTGGGTCGAGATTTTTTAAAATTTTTTCGGAA
260 TTCTATTTTTCATGATTTTTG-AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAA
19764316 CGAGGTTTGG
Statistics
Matches: 917, Mismatches: 105, Indels: 26
0.88 0.10 0.02
Matches are distributed among these distances:
707 2 0.00
708 307 0.33
709 37 0.04
715 2 0.00
717 101 0.11
718 422 0.46
719 46 0.05
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (708 bp):
CAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAA
ATGAGCAGGTGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATTGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
TCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGAAG
TTTTCGACCCAAACTTGGTAGACGTGATCACTGTATTTTTGTTGGCATGCACGAAAAAAATCAGC
TAAAAACTCAAAGTGTACAAAATCTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGGAAACCTGGAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATAAGGGATACAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATTCGG
TGCCTCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCG
Done.