Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 115 of 117
Found at i:19764896 original size:675 final size:671
Alignment explanation
Indices: 19763652--19764983 Score: 1916
Period size: 675 Copynumber: 2.0 Consensus size: 671
19763642 TGTATTTTGA
** * * *
19763652 TTGGCATGCACAACAAAAA-TCAGCTAAAAACTCAAAGTGTACAAAATCTTGTGACCATTTCAAA
1 TTGGCATGCACAA-AAAAAGTCAGCTAAAAACTGGAAGTGTACAAGAT-TTTTGACCATTTGAAA
* * *
19763716 AAAGTGTCCCCATTTCAGAGACTTTAATGGCTACTGGTAGGAAACCTGTAAAATCTCAAATGCTC
64 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * *
19763781 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATACAGGGCTAATATAAGGGCCAAGTACC
129 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACC
* * * *
19763846 AGCACCGATCGCACATTATGTGCGCACACCCCCTCGGCCCCCCCGATCGTCGGAGCCCCAATG-C
194 AGCACCCATCGCACATCATGTGTGCACACCCCCT-GGCCCCCCCGATCGTCGGAACCCCAATGCC
* * * * *
19763910 -T--G-C-CGTTCT--G-G-TTCTCCGACGATCGTGCCTCGACGAGGAAAAATACGGCACCAGCA
258 GTCGGTCAGGTTCTCCGCGATGCTCCGGCGATGGTGCCTCGACGAAGAAAAATACGGCACCAGCA
* * * * *
19763966 CATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAATCCGATCTTAGATTGGGAATGAA
323 CATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAA
* * *
19764031 GTCCGTATGCCTAAGCCAATCGACGAAATGAGCAGATGGGCGGGCGGGCGGGCACTACGCCGGCC
388 CTCCGTATGCCTAAGCCAA-CGGCGAAACGAGC----GGGCGGGCGGGCGGGCACTACGCCGGCC
* *
19764096 AGAGAGACGGGATTCGCAAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
448 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
19764161 TTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
513 TTTCTATATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * *
19764226 TGAAGTTTCATGGCCAGACGACTCATTTTCTATTTTTCATAATTTTTGAAAACTTTTTGTGGGTC
578 TGAAGTTTCATGGCCAGACGACTCATTTTCTATTTTTCATGATTTTTG-AAACTTTTTGCGGTTC
19764291 GAGATTTTTTAAAATTTTTTCGGAACG-AGGT
642 -AGATTTTTTAAAATTTTTTCGGAA-GAAGGT
19764322 TTGGCATGCACAAAAAAAGTCAGCTAAAAACTGGAAGTGTACAAGATTTTTGACCATTTGAAAAA
1 TTGGCATGCACAAAAAAAGTCAGCTAAAAACTGGAAGTGTACAAGATTTTTGACCATTTGAAAAA
* *
19764387 AGTGTCCCAATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTT
66 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * * *
19764452 TAAGGGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTTCCAG
131 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAG
* * * *
19764517 CACCCATCACACATCATGTGTGCACACCCCCTGGCCCCCCTGATCGCCGGAACACCAATGCCGTC
196 CACCCATCGCACATCATGTGTGCACACCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC
*
19764582 GGTCAGGTTCTCCAGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACA
261 GGTCAGGTTCTCC-GCGATGCTCCGGCGATGGTGCCTCGACGAAGAAAAATACGGCACCAGCACA
* * *
19764647 TGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACT
325 TGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACT
* * *
19764712 CCGTATGCCTAAGCCGACCGGCGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCATAGAG
390 CCGTATGCCTAAGCC-AACGGCGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAG
* * *
19764777 ACGGGATGCGCAAGCCGTGGATTGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTG
454 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
* *
19764842 CATGCCAATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
519 TATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* *
19764907 TTCATGG-CGGAACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATT
584 TTCATGGCCAG-ACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCA-GATT
19764971 TTTTAAAATTTTT
647 TTTTAAAATTTTT
19764984 GCAGAAGGAG
Statistics
Matches: 589, Mismatches: 58, Indels: 26
0.88 0.09 0.04
Matches are distributed among these distances:
668 24 0.04
669 168 0.29
670 39 0.07
672 1 0.00
673 2 0.00
674 38 0.06
675 190 0.32
677 1 0.00
678 1 0.00
679 124 0.21
680 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (671 bp):
TTGGCATGCACAAAAAAAGTCAGCTAAAAACTGGAAGTGTACAAGATTTTTGACCATTTGAAAAA
AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAG
CACCCATCGCACATCATGTGTGCACACCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC
GGTCAGGTTCTCCGCGATGCTCCGGCGATGGTGCCTCGACGAAGAAAAATACGGCACCAGCACAT
GCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTC
CGTATGCCTAAGCCAACGGCGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC
GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATA
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
CATGGCCAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGATTTTTT
AAAATTTTTTCGGAAGAAGGT
Found at i:19764970 original size:26 final size:26
Alignment explanation
Indices: 19764936--19764985 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
19764926 TTTTCTATTT
* *
19764936 TTCATGATTTTTGAAACTTTTTGCGG
1 TTCAGGATTTTTGAAAATTTTTGCGG
*
19764962 TTCAGGATTTTTTAAAATTTTTGC
1 TTCAGGATTTTTGAAAATTTTTGC
19764986 AGAAGGAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.22, C:0.10, G:0.16, T:0.52
Consensus pattern (26 bp):
TTCAGGATTTTTGAAAATTTTTGCGG
Found at i:19766338 original size:26 final size:26
Alignment explanation
Indices: 19766302--19766354 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19766292 CTGGTTCGAT
*
19766302 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19766328 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
19766354 C
1 C
19766355 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19768152 original size:26 final size:26
Alignment explanation
Indices: 19768075--19768153 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
19768065 TTGGTCTGAT
*
19768075 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATG
*
19768101 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19768127 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19768153 C
1 C
19768154 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19768604 original size:924 final size:925
Alignment explanation
Indices: 19766541--19769023 Score: 3444
Period size: 924 Copynumber: 2.7 Consensus size: 925
19766531 TGAGCGGGCG
*
19766541 GACGGGATGCGCAAGCCGTGGATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCT
1 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCT
* ** *
19766606 GTGTGCCAATGAGATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCGTTCACGTGAAG
66 ATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * *
19766671 TTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATT
131 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTTACGGTTTGGGATT
* *
19766736 TTTAAAAATTTTTTC-AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGCT-ATCCTTGAATTTTT
196 TTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACG-TGATCCTTGTATTTTT
* * *
19766799 GTTGGCATGCACAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCACTTGGAA
259 GTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTGAAA
* *
19766864 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTAAAATGCTC
323 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* *
19766929 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACC
388 TTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* ***
19766994 AGCACCCATCACACATCATGTGCGCACA-CCCCCCGG-CCCCTCCGATCGCTAAAACCCCAATGC
453 AGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCT-CGATCGCGGGAACCCCAATGC
*
19767057 CG-CAGGTCAGGTTCTCCGACGATGCTCAGACGATGGTGCCCCGACGAAGAAAAATGAAGCACCA
517 CGTC-GGTCAGGTTCTCCGACGATGCTCAGACGATGGTGCCCCGACGAAGAAAAATGACGCACCA
* * **
19767121 GCACATGCCCGAGCCCAGTATGTGCTACCACAACCCTC-----G---G-TC-----C---G-AT-
581 GCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTTGGTCTGATCTTAGACTGGGAATG
* *
19767167 --CT--G-ATCTTAGACTGGGAATGAACTCCGTTTGCTTAGACTGGGAATGAACTCTGTATGCCT
646 AACTCCGTATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
19767227 AAGTCAACCCAGGAAACGAGTGTACGGGCGTTCAGGCGGCCAGAGGGGCGGGATGCGTCAGTCGG
711 AAGTCAACCCAGGAAACGAGCGTACGGGCGTTCAGGCGGCCAGAGGGGCGAGATGCGTCAGCCGG
* * * ** * * * * * *
19767292 GGATAGGCCGAATCCCTCTCTGCATGCTGCCAATCCTGCTACCGTAATCGTCGGTTCGGTCTGAT
776 GGATAGACCGAATCCCACTCTGCATGCTACCAATCCTGCTACCACAACCCTCAGTCCGATCCGAT
* * *
19767357 CTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGACAGACGGGCAGG
841 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG--AGACGGGCAGG
*
19767422 CGAGCACTACGCCAGCCAGAGA
904 CGAGCACTACGCCAGCCAAAGA
** *
19767444 GATAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCT
1 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCT
* * * *
19767509 TTGTGCCAATGCCATTTTTATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTAAAG
66 ATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* *
19767574 TTTCATGGCAAGACGACTCGTTTTCTATTGTTCACTATTTTTGAAACTTTTTACGGTTTGGTATT
131 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTTACGGTTTGGGATT
* * * *
19767639 TTTTAAAATTTTTTTGGAAGGAGCTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTT
196 TTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
19767704 TGGCATGTA-AAAAAAAATC-GACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAA
261 TGGCATGCACAAAAAAAATCAG-CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT-GAAAA
* *
19767767 AAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCT
324 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * *
19767832 TTAAGAGGGTGTGAGTTCTTGAGGTTTGGTGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCA
389 TTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* *
19767897 GCACCCATTGCACATCATGCGCGCACACCCCCCCGGCCCCCTCGATCGTC-GGAACCCCAATGCC
454 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCTCGATCG-CGGGAACCCCAATGCC
** * *
19767961 GTCGGTCAGGTTCTCCGGTGATGCCCCGACGATGGTGCCCCGACGAAGAAAAAT-ACGTCACCAG
518 GTCGGTCAGGTTCTCCGACGATGCTCAGACGATGGTGCCCCGACGAAGAAAAATGACG-CACCAG
*
19768025 TACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATG
582 CACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGG-TTGGTCTGATCTTAGACTGGGAATG
*
19768090 AACTCCGTATCCTTAGACTGTGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
646 AACTCCGTAT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * *
19768155 TAAGTCAACCCATGAAACGAGCGTGCGGGC-TCTCAGTCGGCCAGAGGGGCGAGATGCG-CAAGC
710 TAAGTCAACCCAGGAAACGAGCGTACGGGCGT-TCAGGCGGCCAGAGGGGCGAGATGCGTC-AGC
* * ** * * *
19768218 CGGGGATCGATCGGGT-CCACTCTGCATGCTATCGATCCTGCTGCCACAACCCTCAGTCCGATCC
773 CGGGGATAGACCGAATCCCACTCTGCATGCTACCAATCCTGCTACCACAACCCTCAGTCCGATCC
*
19768282 GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAGGAAACGAGCGG-G-CGGGCAG
838 GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAGACGGGCAG
* *
19768345 GCG-GTCACTACGTCGGCCAAAGA
903 GCGAG-CACTACGCCAGCCAAAGA
*
19768368 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
1 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCT
* * *
19768433 ATGTGCCAAAGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAG
66 ATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * ** *
19768498 TTTCATGGCAAGATGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTCTGTGGTTCGGGATT
131 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTTACGGTTTGGGATT
* * * * * * *
19768563 TTTTTAAATTTTTCCGAAAGTATTTTTTGCCCCATACTTGGTAGACGTGATCCTTGTATGTTTGT
196 TTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * * *
19768628 TGGCATGCATAAAAAAAATCAGCGAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAGAA
261 TGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTGAAAAA
*
19768693 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTT
325 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
19768758 TAAGGGGGTGTGAGTTTTTGAGGTTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGTACCAG
390 TAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
** *
19768823 CACCCATCGCACATCATGTGCGCACACCCCCTGGGCCCCCT-GATCGCGGGAACCCCAATGCTGT
455 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCTCGATCGCGGGAACCCCAATGCCGT
* * * * *
19768887 CGGTTAGGTTCTCCGACGATTCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCCGCACCAGCAC
520 CGGTCAGGTTCTCCGACGATGCTCAGACGATGGTGCCCCGACGAAGAAAAATGACGCACCAGCAC
* *
19768952 ATGCCTGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
585 ATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGT-TGGTCTGATCTTAGACTGGGAATGAAC
19769017 TCCGTAT
649 TCCGTAT
19769024 GCCTATGCCG
Statistics
Matches: 1395, Mismatches: 141, Indels: 67
0.87 0.09 0.04
Matches are distributed among these distances:
901 3 0.00
902 194 0.14
903 354 0.25
904 7 0.01
909 1 0.00
912 1 0.00
913 2 0.00
918 1 0.00
921 1 0.00
922 2 0.00
923 3 0.00
924 406 0.29
925 211 0.15
926 3 0.00
927 1 0.00
928 90 0.06
929 115 0.08
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (925 bp):
GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCT
ATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTTACGGTTTGGGATT
TTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
TGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTGAAAAAA
GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
AAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
ACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCTCGATCGCGGGAACCCCAATGCCGTC
GGTCAGGTTCTCCGACGATGCTCAGACGATGGTGCCCCGACGAAGAAAAATGACGCACCAGCACA
TGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTTGGTCTGATCTTAGACTGGGAATGAACTC
CGTATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
AACCCAGGAAACGAGCGTACGGGCGTTCAGGCGGCCAGAGGGGCGAGATGCGTCAGCCGGGGATA
GACCGAATCCCACTCTGCATGCTACCAATCCTGCTACCACAACCCTCAGTCCGATCCGATCTTAG
ACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAGACGGGCAGGCGAGCAC
TACGCCAGCCAAAGA
Found at i:19769719 original size:717 final size:712
Alignment explanation
Indices: 19768256--19770489 Score: 3294
Period size: 717 Copynumber: 3.1 Consensus size: 712
19768246 CTATCGATCC
* *
19768256 TGCTGCCACAACCCTCA-GTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCT-AGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
19768320 ACCGAGGAAACGAGCGGGCGGGCAGGCGGTCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCC
65 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCT
* *
19768385 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAAAGCCATTT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
* *
19768450 CTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGATGAC
195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
* * * * * *
19768515 TCGTTTTCTATTTTTCACTATTTTTGAAACTTTCTGTGGTTCGGGATTTTTTTAAATTTTTCCGA
260 TCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGA
* * * * * * *
19768580 AAGTATTTTTTGCCCCATACTTGGTAGACGTGATCCTTGTATGTTTGTTGGCATGCATAAAAAAA
325 AAGGA-GTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAATAAA
* * * *
19768645 ATCAGCGAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTCAGA
389 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTTAGA
*
19768710 CACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTT
454 CACTTTAATGGCTACTG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
19768775 TTGAGGTTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
518 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
** * * * *
19768840 GTGCGCACACCCCCTGGGCCCCCTGATCG-CGGGAACCCCAATGCTGTCGGTTAGGTTCTCCGAC
583 GTGCGCACACCCCCCCGGCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* * * *
19768904 GATTCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCCGCACCAGCACATGCCTGAGCCCAGCAT
647 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCAT
19768969 G
712 G
* * * * * * * *
19768970 TGCTGTCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCGA
1 TGCTGCCGCAACCCTAGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
19769035 CCGACAAAAC-ACGCGGGCGGGCGGGCGGGCGAGCACTACGCCGGTCAGAGAGACGGGATGTGCA
66 CCGACGAAACGA-GCGGGCGGGCGGGC--G-G-GCACTACGTCGGCCAGAGAGACGGGATGCGCA
*
19769099 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTATGCACATCTTCATATTTCTACGTGCCAATGCC
126 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
* *
19769164 ATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
191 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
19769229 TGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTT
256 TGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTT
* * **
19769294 TCGAAAGGAGTTTGGTCCCAAACTTGGTAGACTTGATCCTTGTATTTTTGTTGAAATGCACAAAT
321 TCGAAAGGAGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAT
* *
19769359 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTT
386 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTT
* *
19769424 AAACACTTTAATGGCTACTGCTAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
451 AGACACTTTAATGGCTACTGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
19769489 TTCTTGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACAT
515 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
19769554 CATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCG
580 CATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** * * * * *
19769619 GTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCTGAACCCAGT
645 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGC
19769684 ATG
710 ATG
*
19769687 TGCTGCCGCAACCCTAGGTCC-AGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
1 TGCTGCCGCAACCCTAGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
19769751 ACTGACGAAACGAGTGGACGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCC
65 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG-C
* *
19769816 T-TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
129 TGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
*
19769880 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
194 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
* *
19769945 CTCGTTTTCTATTTTTCATGATTTTC-AAAGCTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC
259 CTCGTTTTCTATTTTTCACGATTTTCGAAA-CTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTC
* * * *
19770009 GAAAGGAGTTTGGCCCCAAACTTGGTAAAGGTGATCCTTTTATTTTTTTTTGGCATGCACAAATA
323 GAAAGGAGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAATA
*
19770074 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTTA
387 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTTA
* * *
19770139 GACACTTTAATAGCTACTGGCGGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGC
452 GACACTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
19770204 TCTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
516 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
*
19770269 ATGTGCACACACCCCCCCGGCCCCTCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
581 ATGTGCGCACACCCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * *
19770334 ACGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGTAGCACTAGCAGATGCCCGAGCCCAGC
645 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGC
19770399 ATG
710 ATG
* * * * *
19770402 TGCTACCGCAACCCTAGGTTCGATCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
1 TGCTGCCGCAACCCTAGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
19770467 TAC-ATGAAACGAGCGTGCGGGCG
66 -CCGACGAAACGAGCGGGCGGGCG
19770490 CTCAGCCGGC
Statistics
Matches: 1358, Mismatches: 145, Indels: 33
0.88 0.09 0.02
Matches are distributed among these distances:
712 3 0.00
713 247 0.18
714 300 0.22
715 171 0.13
716 3 0.00
717 417 0.31
718 217 0.16
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (712 bp):
TGCTGCCGCAACCCTAGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
CGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGAA
AGGAGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAATAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTTAGACA
CTTTAATGGCTACTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
CTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATG
Found at i:19771388 original size:873 final size:870
Alignment explanation
Indices: 19769687--19773777 Score: 5688
Period size: 873 Copynumber: 4.7 Consensus size: 870
19769677 ACCCAGTATG
* * * * *
19769687 TGCTGCCGCAACCCTAGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * * ** *
19769752 CTGACGAAACGAGTGGACGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCT
65 CCGACGAAACGAGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
19769817 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
130 T-GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
19769882 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
194 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
19769947 CGTTTTCTATTTTTCATGA-TTTTCAAAGCTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC-G
259 CGTTTTCTATTTTTCACGATTTTTGAAA-CTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAG
* * * *
19770010 AAAGGAG-TTTGGCCCCAAACTTGGTAAAGGTGATCCTTTTATTTTTTTTTGGCATGCACAAATA
323 -AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAA
* * *
19770074 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTTA
386 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
19770139 GACACTTTAATAGCTACTGGCGGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGC
451 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
19770204 TCTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
516 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
*
19770269 ATGTGCACACACCCCCCCGGCCCCTCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
581 ATGTGCGCACACCCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * *
19770334 ACGATGCTCCGACGATGGTGCCCTGACGAAGAAAAAT--GTAGCACTAGCAGATGCCCGAGCCCA
645 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACG-A-CACCAGCACATGCCCGAGCCCA
* * * * *
19770397 GCATGTGCTACCGCAACCCTAGGTTCGATCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAA
708 GCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
** * * * *
19770462 GTCAATACATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATGTGCAAGTCGGGG
773 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * *
19770527 ATCGACTGCGTCCCCCTCAGCGTGCTGTCTATCC
838 ATCGACTGGGTCCCCCTCTGCGTGCTG-CGATCC
* * * *
19770561 TGCTGCTGCAACCCTCGATCCGGTCTAATCTTAAACTAGGAATGAACTTCGTATG-CTAAAGCCA
1 TGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACT-GGAATGAACTCCGTATGCCT-AAGCCA
* * * * * *
19770625 ACCGATGAGACTAGCGGACGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGAGATGCACAAGCC
64 ACCGACGAAACGAGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
19770690 CTAGATTGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCATGCCAAAGCCATTT
129 GT-GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
19770755 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGGAC
193 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
19770820 ACGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTGCAGTTCGAGATTTTTTAAAAGTTTTTCAG
258 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAG
* * *
19770884 AAGAAGTTTTGCCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
323 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
19770949 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
388 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
19771014 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGTTC
453 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
19771079 TCAAGATTTGATGAGGGAGAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATCGCACATCAT
518 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
19771144 GTGCGCACACCCCCCCGACGACCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGC
583 GTGCGCACACCCCCCCGGC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* ** * * * *
19771209 GATGCT-TGAGCGATGGTGCCCCGGTGAAGAAAAATGCGACGCCAACACATGCTCGAGCCCAGCA
647 GATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCA
* * * *
19771273 TGTGCTGCCGGAACCCTCGGTCCGATCCGGTATTAGACTGGGAATGAACTCCGTTTGCCTAAGTC
711 TGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
19771338 AACCCACGAAATGAGAGTGCGGGCGCTCAGCTGGCCAGAGGGGTGGGATGTGCAAGTCGGGGATC
776 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* *
19771403 AACCGGGTCCCCCTCTGCGTGCTGCAGATCC
841 GACTGGGTCCCCCTCTGCGTGCTGC-GATCC
* * *
19771434 TG-TGGTTGCAACCCTCGGTTCGATCCAATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCA
1 TGCT-GCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGG-AATGAACTCCGTATGCCTAAGCCA
* * * *
19771498 ACCGACGAAAGGAGCGGGCGGGCAGGT--G--CTACGCCGACCAGAGAGACGGGATGCGCAAGTC
64 ACCGACGAAACGAGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * * *
19771559 ATGTATCGATAGGGTGGTAGGTGGGTTTACGCACATCTGCATATTTCTACATGCCAATGCCTTTT
129 GTG-ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
19771624 TTATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGACGAC
193 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * * *
19771689 TCGTTTTCTATTTTTTACG-TTTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAACTTTTTTGA
258 TCGTTTTCTATTTTTCACGATTTTT-GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCA
* *
19771753 -AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
322 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
*
19771817 ATTCAGATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
387 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * *
19771882 ACACTTTCATGGCCACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTT
452 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
19771947 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
517 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
19772012 TGTACGCACA-CCCCCCGGCCCCCCGATCGTTGGAACCCCAATGCCGCCGGTCAGGTTC-CCTGG
582 TGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GA
* * * * * * *
19772075 TGATGCTCCGATGATAGCGCCCAGGCGAAGAAAAATATGACACCAGCACATGCCCGAGCCCAGCA
646 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCA
* * * * ** *
19772140 TGTGCTGCCGCAATCCTCGGTCTGGTCTGATCTTAGACTAAGAATGAACTCTGTATGCCTAAGTC
711 TGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
** * * * *
19772205 AACCCACGAAACGAGCGTTTGGGCGTTCAGTCGGCAAGAGGGGCGGGATGCACAAGCCGGGGATC
776 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
*
19772270 GA-TCGGGCCCCCCTCTGCGTGCTGCTGATCC
841 GACT-GGGTCCCCCTCTGCGTGCTGC-GATCC
* * * ** * * *
19772301 AGCTACCGCAACCCTCAATTCGGT-CAGATCTTAGACTGAGAATGAACTTCGTATGCCTGAGCCA
1 TGCTGCTGCAACCCTCGGTCCGGTCCA-ATCTTAGACTG-GAATGAACTCCGTATGCCTAAGCCA
* * * *
19772365 ACCGACGAAACGAGCGGGCGGGTGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCA
64 ACCGACGAAACGAGCGGGC----GGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
**
19772430 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGGTGCCAATGCC
125 AGCCGT-GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
19772495 ATTTTTGTGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
189 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
19772560 CGATTCGTTTTCTATTTTTCACGATTTTTGAAAATTTTTACGGTTCCAGATTTTTAAAAATTTTT
254 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
** * * *
19772625 TGGGAAGGATTTTTGGCCCTAAACTTGGTAGTCGTGATCCTTGTATTTTTTTTGGCATGCACAAA
319 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* *
19772690 AAGATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTT
384 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
19772755 CAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTGTGA
449 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
19772820 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
514 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
19772885 TCATGTGCGCACACCCCCCCGGTCCCCCCGATCGTAGGAACCCCAATACCGTCGGTCAGGTTCTC
579 TCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * *
19772950 CGACGATTCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGACCGAGCCCA
643 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCA
* * * * *
19773015 GCATGTGCTGCCACAACCCTCAGTCCGGTCCGATCTTAAACTGGGAATGAACTCCTTATGCCTAA
708 GCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * ** *
19773080 GTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGCCAGAGGGGCGAAATGCGCAAGCCGAGG
773 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * *
19773145 ATTGGCAGGGTCCCCCTCTGCATGCTGTGGATCC
838 ATCGACTGGGTCCCCCTCTGCGTGCTG-CGATCC
* ** *
19773179 TGCTGCTGCAACCCTCGGTCTGGTCTGATCGTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
19773244 CTGATGAAACGAGTGGGCGGGTGGGCGGGTGGGCACTACACCGGCCAGAGAGATGGGATGCGTAA
65 CCGACGAAACGA----GCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
19773309 GCTGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCATGCCAATGCCA
126 GCCGTG-ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * *
19773374 TTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCATGTGAAGTTTAATAGCAAGAC
190 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
19773439 GACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAACTTTTTT
255 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
* *
19773504 -GGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
320 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * *
19773568 AAATTCAGATAAAAACTTGAAGTGTACACGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
385 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
19773633 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGCGAG
450 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
19773698 TTCTCGA-GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
515 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
19773762 CATGTGTGCAC-CCCCC
580 CATGTGCGCACACCCCC
19773778 TATATGCGGC
Statistics
Matches: 2844, Mismatches: 329, Indels: 87
0.87 0.10 0.03
Matches are distributed among these distances:
866 4 0.00
867 287 0.10
868 18 0.01
869 421 0.15
870 27 0.01
871 8 0.00
872 6 0.00
873 555 0.20
874 285 0.10
875 207 0.07
876 325 0.11
877 197 0.07
878 496 0.17
879 3 0.00
882 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (870 bp):
TGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
CTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTG
GGTCCCCCTCTGCGTGCTGCGATCC
Found at i:19774775 original size:26 final size:26
Alignment explanation
Indices: 19774746--19774796 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19774736 CGATCCGATC
19774746 TTAGACTAGG-AATGAACTCCGTATGT
1 TTAGA-TAGGCAATGAACTCCGTATGT
*
19774772 TTAGATTGGCAATGAACTCCGTATG
1 TTAGATAGGCAATGAACTCCGTATG
19774797 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
TTAGATAGGCAATGAACTCCGTATGT
Found at i:19775681 original size:26 final size:26
Alignment explanation
Indices: 19775645--19775694 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19775635 CTAGTTTGAT
*
19775645 CTTAGGCTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
19775671 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
19775695 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:19775885 original size:900 final size:900
Alignment explanation
Indices: 19773784--19776548 Score: 3716
Period size: 902 Copynumber: 3.1 Consensus size: 900
19773774 CCCCTATATG
*
19773784 CGGCACTAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGATTCGATCTTAGA
1 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGATTCGATCTTAGA
* * * *
19773849 CTGGGAATGACCTCCATAAGCTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCATGAAT
66 CTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
* * * * * *
19773914 CGAGCGTG-AGGGCGCTCAGTCGGCAAGAGGGGCGGGATGCACAAGCCGAGGAT-AGGCTGGGTC
131 CGAGCATGCAGGGCGCTCAGCCGGCAAGAGGGGCGGGATGCGCAAGCCGGGGATCA-ACCGGGTC
* * * * *
19773977 CCCCTCTGCGAGCTGCCGATCCTACTACCA-CAACCCTCAGTCCAATCTAATCTTATACTGGGAA
195 CCCCTCTGCGTGCTGCCGATCCTGCTA-CAGCAACCCTCAGTCCGATCTAATCTTACACTAGGAA
* ** *
19774041 TGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGGCGGGCAGGTAGGCGGACACTACGTC
259 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCAGGCGGGCGGGCACTACGTC
* *
19774106 GGCCAGGGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
323 GGCCAAGGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
*
19774171 CATAGTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
388 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* *
19774236 CACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGG
453 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA-TTTTTACGG
*
19774301 TTCGGGATTTTTTAAAATTTTTTTGGTAAG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
517 TTCGAGATTTTTTAAAA-TTTTTTGG-AAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * * *
19774365 GTATTTTTGGTGGCATGCACAAAAAAACTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
580 GTATTTTTGTTGGCATG-ACAAAAAAATTCATCTAAAAACTCGAAGTGTACAAGATTTTGTTACC
19774430 ATTTGAAAAAAGTGTCCCCATTT-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
644 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
19774494 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGT
709 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* ** * * *
19774559 CAAGTCCAAGCACCCATCACACATCATGTGCATACACCCCCCGGCCCTTCCGATCATCGAAACCC
774 CAAGTACAAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCTCCGATCGTCGGAACCC
* * *
19774624 CAATGTCGTCGGTCAGGTTCTCCAGAGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATG
839 CAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATA
* * * * *
19774686 TGGCACCAGGACATGCCCGAGCCCAGCATGGGCTGCCACAACCCTCAGTCCGATCCGATCTTAGA
1 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGATTCGATCTTAGA
* * * * * *
19774751 CTAGGAATGAACTCCGTATGTTTAGATTGGCAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
66 CTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
* * * * *
19774816 CGAGCATGCA-GGAGCTCAACCGGTAAGAGGGGCGGGATGCGCAAGCCGGAGATCGACCGGGTCC
131 CGAGCATGCAGGGCGCTCAGCCGGCAAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGTCC
* * * * * *
19774880 CCCTCTGCGTGCTACCGATCCTGCTACCGTAACCCTCGGTCTGATCTAATATTACACTAGGAATG
196 CCCTCTGCGTGCTGCCGATCCTGCTACAGCAACCCTCAGTCCGATCTAATCTTACACTAGGAATG
*
19774945 AACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGTCGG
261 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCAGGCGGGCGGGCACTACGTCGG
* *** *
19775010 CCAAGGAAACGGGATTTACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTATGCACATCTTCA
325 CCAAGGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
19775075 TATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
390 TATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
*
19775140 CGTGAAGTTTCATGGCAAGAC-AGTTCGTTTTCTATTTTTCATGATTTTCAAAATGTTTTACGGT
455 CGTGAAGTTTCATGGCAAGACGA-CTCGTTTTCTATTTTTCATGATTTTCAAAAT-TTTTACGGT
* * *
19775204 TCAAGATTTTTTAAAATTTTTTGAGAAGAAGTTCTGGCCCCAAACTTAGTAGACGTGATCCTTGT
518 TCGAGATTTTTTAAAATTTTTTG-GAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
19775269 ATTTTTGTTGGCATG-CATAAAAATTCATCTAAAAACTCGAAGTGTATAAGATTTTGTTACCATT
582 ATTTTTGTTGGCATGACAAAAAAATTCATCTAAAAACTCGAAGTGTACAAGATTTTGTTACCATT
* * *
19775333 TGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTCGCAGCAAACCTGTAAAATCTAAAA
647 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
19775398 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
712 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * *
19775463 GTATCGA-TACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCTGATCGTCGGAACCCCA
777 GTA-CAAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCTCCGATCGTCGGAACCCCA
* * *
19775527 ATGCCGTCGGTCAGGTTC-CCTGGCGATGCTCCG-TGATGGTGACCCGGTGAAGAAAAATA
841 ATGTCGTCGGTCAGGTTCTCC-GGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATA
* * * * *
19775586 CGGCACCAACACATGCCCGAGCCCAACATGTGCTGCCGTAACCCTC-GAT-CTAGTTTGATCTTA
1 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAG-TCCGA-TTCGATCTTA
* *
19775649 GGCTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
64 GACTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
* * * * **
19775714 AAC-AAC-TGCACGGGCGCTCAGCCGGCCAGAGGGGTGGTATGCGCAAGTTGGGGATCAACCGGG
129 AACGAGCATGCA-GGGCGCTCAGCCGGCAAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGG
* * * * *
19775777 TCCCCCTCTGCGTGCTGCCGATCCTGCTGCAGCAACCCTCAATCCGATCTGATCTTAGACTTGGA
193 TCCCCCTCTGCGTGCTGCCGATCCTGCTACAGCAACCCTCAGTCCGATCTAATCTTACACTAGGA
* * * *
19775842 ATGAACTTCGTATGCCTAAGCGAACCGACGAAATGA---GC--G--GGCGGGTGGGCACTACGTC
258 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCAGGCGGGCGGGCACTACGTC
* *
19775900 GACC-AGAGAGA-GGTGATGCGCAAGCCGTGGATCGATAGGGCGGTAGGTGGGTTTAGGCACATC
323 GGCCAAG-GAGACGG-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *** ** * *
19775963 TTCATATTTCTACATAATAATGTGATTTTTATGGCTTGTAAATTCATACAATGGTCACTTGAGCC
386 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
19776028 TTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTTAC
451 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC-AAAATTTTTAC
*
19776093 GGTTCGAGATTTTTTAAAATTTTTTCGGAA-AGAGTTTTGGCCCCAAACTTGGTAGACATGATCC
515 GGTTCGAGATTTTTTAAAATTTTTT-GGAAGA-AGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
19776157 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGT-GAAAAACTCAAAGTGTACAAGA---T-TT
578 TTGTATTTTTGTTGGCATG-ACAAAAAAATTCA-TCTAAAAACTCGAAGTGTACAAGATTTTGTT
19776217 ----TTTG-----A------CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
641 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
19776267 CTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATGAGGGATAGGGGGCCAGTATAAG
706 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* ** * * *
19776332 GGCCAAGTACCAGCACTAATCACACATCATGTGCGCACACCCCCCCTCGGCCCCTCCAATCGCCA
771 GGCCAAGTACAAGCACCCATCACACATCATGTGCGCACA--CCCCC-CGGCCCCTCCGATCGTCG
**
19776397 GAACCCCAATGTCG-CGGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA
833 GAACCCCAATGTCGTC-GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAA
19776461 AATA
897 AATA
* * * * *
19776465 TGGCACCAGCACATGCCCGAGGCCAGCATGTGCTGTCGCAACCCTCTGTCCGA-TCAGATCTTAT
1 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGATTC-GATCTTAG
19776529 ACTGGGAATGAACTCCGTAA
65 ACTGGGAATGAACTCCGTAA
19776549 CCCTCGGTCT
Statistics
Matches: 1644, Mismatches: 186, Indels: 89
0.86 0.10 0.05
Matches are distributed among these distances:
874 2 0.00
875 135 0.08
877 6 0.00
878 50 0.03
879 90 0.05
880 3 0.00
881 1 0.00
886 4 0.00
890 2 0.00
891 6 0.00
892 255 0.16
893 6 0.00
894 31 0.02
895 1 0.00
896 2 0.00
898 4 0.00
899 5 0.00
900 325 0.20
901 196 0.12
902 519 0.32
903 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (900 bp):
CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGATTCGATCTTAGA
CTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
CGAGCATGCAGGGCGCTCAGCCGGCAAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGTCC
CCCTCTGCGTGCTGCCGATCCTGCTACAGCAACCCTCAGTCCGATCTAATCTTACACTAGGAATG
AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCAGGCGGGCGGGCACTACGTCGGC
CAAGGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAATTTTTACGGTTCG
AGATTTTTTAAAATTTTTTGGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
TTGTTGGCATGACAAAAAAATTCATCTAAAAACTCGAAGTGTACAAGATTTTGTTACCATTTGAA
AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
AAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCTCCGATCGTCGGAACCCCAATGTC
GTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATA
Found at i:19778017 original size:26 final size:26
Alignment explanation
Indices: 19777988--19778040 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19777978 CCGATTTAAT
19777988 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
19778014 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
19778040 C
1 C
19778041 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:19779839 original size:716 final size:714
Alignment explanation
Indices: 19778152--19780345 Score: 3079
Period size: 718 Copynumber: 3.1 Consensus size: 714
19778142 CTTGCTACTA
* * * *
19778152 CAACCCTCGGTCTGGTTCGATATTAGATTGGGAATGAACTTCGTATGCCAAAGCCAACCGAC-AA
1 CAACCCTCGGTCT-GTTCGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAA
* * * *
19778216 ACGAGCGAGCGGGCGGGCGGGCACTACCCCGACCAGAGAGATGGGATGCGCAAGCTGTGGATCGA
65 ACGAGCGGGCGGGCGGGCGGGCACTA-CGCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGA
*
19778281 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATTGCTT
129 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTT
* **
19778346 GTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCT
194 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT
** * **
19778411 ATTTTTCATGATTTTGGAAACTTTTTGCAGTTCA-GGATTTTTTAAAATTTTTTC-AGAGGGAGT
259 ATTTTTCATGATTTTCAAAACTTTTTGC-GGTCAGGGATTTTTTAAAATTTTTTCGA-AATGAGT
*
19778474 TTT-GCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTTTTGGTATGCATAAAAAAAATCAGCT
322 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTATGCATAAAAAAAATCAGCT
* *
19778538 AAAAAC-TCAGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTT
387 AAAAACTTGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * * *
19778602 AATGGCTAAT-GTAGCAAACCTGTATAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
451 AATGGCTACTGGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * * *
19778666 TTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGG
516 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGTGCGC
* * * *
19778731 AC-GCCCCCTCTGGCCCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATG
581 ACACCCCCCTCCGGCCCCTCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATG
* * * * * *
19778795 CTCCGATGATGGTGCCCCGGTGAAGACAAATACGGTACCAGCAAATGTCCGAGCCCAGCATGTGC
646 CTCCGACGATGGTGCCCC-GCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
*
19778860 T-ATCG
710 TGCT-G
* * *
19778865 TAACCCTCGGTCTAGTCCGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACAGACGAA
1 CAACCCTCGGTCT-GTTCGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGACG-A
* * * * *
19778930 ATTAGCGGGAGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGAGATGCCCAAGCCGTGGA
64 A--A-CGAGCGGGCGGGCGGGCGGGCACTACGC-GGCCAGAGAGATGGGATGCGCAAGCCGTGGA
* * * * *
19778995 TCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCTTTTTTATG
125 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATG
* *
19779060 GCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGATGACTCATT
190 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
* *
19779125 TTCTATTTTTCATGATTTTCAAAACTTTTTGCGGCCAGGGATTTTTTAAACTTTTTTCGAAATGA
255 TTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTCAGGGATTTTTTAAAATTTTTTCGAAATGA
* *
19779190 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAAATCAG
320 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTATGCATAAAAAAAATCAG
* * *
19779254 CTAAATACTTGAAGTGTACAAAATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
385 CTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
19779319 TAATGGCTACTGGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGAGTTTTCGAG
450 TAATGGCTACTGGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
19779384 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACGTCATGTGCG
515 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGTGCG
* ** **
19779449 CACACCCCCCCTCCGACCCCTCCGATCACCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGA
580 CACA-CCCCCCTCCGGCCCCTCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGA
*
19779514 TGCTCCGACGATGGTGCCCCGCGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTG
644 TGCTCCGACGATGGTGCCCCGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
19779579 CTGCTG
709 CTGCTG
* * *
19779585 CAACCCTCGGTCTGCTTCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCTG-TTCGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAA
* * * *
19779650 ACGAGCGGGCGGGTGGGCGGGCACTACGTCGGCTAAAGAGATGGGATGCGCAAGCCATGGATCGA
65 ACGAGCGGGCGGGCGGGCGGGCACTACG-CGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGA
* *
19779715 TAGGGTGGTAGGTGGGTTTGGGGACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTT
129 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTT
* *
19779780 GTAAATTCATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCAGGGCAAGACGACTCATTTTCT
194 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT
* * ** ** * *
19779845 ATTTTTCGTGATTTTTAAAACTTTTTTTGGTTTGGGATTTTTTAAAATTTTTTTG-GATCGAGTT
259 ATTTTTCATGATTTTCAAAACTTTTTGCGGTCAGGGATTTTTTAAAATTTTTTCGAAAT-GAGTT
*
19779909 TTGGCCCCAAACTTGGTAGACGTGATCCATGTATTTTTTTTGGTATGCATAAAAAAAATCAGCTA
323 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTATGCATAAAAAAAATCAGCTA
* ** *
19779974 AAAACTCGAAGTGTACCCGATTTTGTGACCATTTGAAAAAAGTGTCCCTA-TTCTAGACACTTTA
388 AAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTA
* *
19780038 ATGGCTACTGGCAGCAAAGCCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCGAGGT
452 ATGGCTACTGGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * *
19780103 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATAAGCACCCATTGCACATCACGTGCGCA
517 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGTGCGCA
* *
19780168 CA--CCCC-CCGGCCCCTCCGATCGTCGAAACCCCAATGCCGTCGGTCAAGTTCT-CGGACGATG
582 CACCCCCCTCCGGCCCCTCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG-CGATG
* * * * *
19780229 GTCCGACGATGATGCCTCGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCC-GACATGTGC
646 CTCCGACGATGGTGCCCCGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG-CATGTGC
*
19780293 TGCCG
710 TGCTG
* * * *
19780298 TAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTTTGTATGC
1 CAACCCTCGGTCTGTTC-GATCTTAGACTAGGAATGAACTTCGTATGC
19780346 TTAGACTGGG
Statistics
Matches: 1313, Mismatches: 146, Indels: 44
0.87 0.10 0.03
Matches are distributed among these distances:
712 6 0.00
713 196 0.15
714 4 0.00
715 4 0.00
716 272 0.21
717 201 0.15
718 303 0.23
719 159 0.12
720 97 0.07
721 71 0.05
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (714 bp):
CAACCCTCGGTCTGTTCGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAA
CGAGCGGGCGGGCGGGCGGGCACTACGCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATA
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTAT
TTTTCATGATTTTCAAAACTTTTTGCGGTCAGGGATTTTTTAAAATTTTTTCGAAATGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTATGCATAAAAAAAATCAGCTAAAA
ACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGTGCGCACACC
CCCCTCCGGCCCCTCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCG
ACGATGGTGCCCCGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTG
Found at i:19780369 original size:26 final size:26
Alignment explanation
Indices: 19780319--19780371 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19780309 CCGATCTGAT
**
19780319 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19780345 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19780371 C
1 C
19780372 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19781253 original size:26 final size:26
Alignment explanation
Indices: 19781224--19781276 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19781214 CCGGTCCGAT
19781224 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
19781250 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
19781276 C
1 C
19781277 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:19782812 original size:26 final size:26
Alignment explanation
Indices: 19782783--19782832 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19782773 TGGTCCGATC
*
19782783 TTAGACTGGGAATGAACTCCGTATTG
1 TTAGACTGGGAATAAACTCCGTATTG
19782809 TTAGACTGGGAATAAACTCCGTAT
1 TTAGACTGGGAATAAACTCCGTAT
19782833 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATTG
Found at i:19783705 original size:26 final size:26
Alignment explanation
Indices: 19783669--19783721 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19783659 CTGATCCGAT
*
19783669 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19783695 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19783721 C
1 C
19783722 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19784584 original size:26 final size:26
Alignment explanation
Indices: 19784555--19784607 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19784545 CTGGTTCGAT
*
19784555 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19784581 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19784607 C
1 C
19784608 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19784994 original size:888 final size:886
Alignment explanation
Indices: 19782698--19788109 Score: 6407
Period size: 878 Copynumber: 6.1 Consensus size: 886
19782688 ATGCTCTGAT
* * * **
19782698 GATGGTGCCCCGGAGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGTCACA
1 GATGGTGCCCTGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTA
* * * *
19782763 ACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATTG-TTAGACTGGGAATAAACT
66 ACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTA-TGCTTAGACTGGGAATGAACT
* *
19782827 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACCAGAGGACCGGGATG
130 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCC-GAGG-GCGGGATG
* * * * * ** *
19782892 CGCAAGCTGGGGATCGATCGGGGCCCCCTCTGTGTGCTGTCGATCCTGTTGTAGCAACCCTCGGT
193 CGCAAGCCGAGGATCGATCGGGTCCCCCTCTGTGTGCTATCGATCCTGCTGCCGCAACCCTCAGT
* * *
19782957 CTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCAGGCG
258 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCA-GCG
* * * * *
19783022 GGCCGGCGGGCGGGCA-T----CAGCCAGAGAGACGGGTTGCGTAAGCCGTGGATCGATAGGATG
322 GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
19783082 GTAGGTGGGTTTAGGCACATCCTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATT
387 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* *
19783147 CATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTC
452 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * *
19783212 ACGATTTTTGAAACTTTTTGA-GGTTCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCC
517 ACGATTTTTGAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCC
* * *
19783276 CAAACTTGGTAGACATGATCCTCGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTT
581 CAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
19783341 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTGACACTTTAATGGCTAC
646 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
19783406 TGGCACCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTT-ATGA
711 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TTTGATGA
*
19783470 GGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCC
775 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * * *
19783535 CCGGCCTCCCGATCGTCAGAACCCTAATGTCGCCGGTCAGATTCTCAGAC
840 CC--CC-CCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGAC
* * *
19783585 GGTGGTGCCCTGGCGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGTA
1 GATGGTGCCCTGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTA
* * * *
19783650 GCCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGAATGAACTC
66 ACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTC
** * * * *
19783715 CGTATGCCTAAGTCAACCCATTAAACGAGAGTGCGGGCACTCAACCGGCCAGAGGGGTGGGATGC
131 CGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCC-GA-GGGCGGGATGC
* * * * * * *
19783780 ACAAGCTGGGGATCGATCGGGTCCCCCTCTGTGTGTTGTCGATCCTACTGCCACAACCCTGCA-T
194 GCAAGCCGAGGATCGATCGGGTCCCCCTCTGTGTGCTATCGATCCTGCTGCCGCAACCCT-CAGT
* * ** * * * *
19783844 CGGGTCTGATCTTAGACTATGAATGAACTCCGTATGCTTAAGCAAACTGATGAAACGAGCA---G
258 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGCGG
* * * ** *
19783906 GCGGGTGGGCTGGCACTACGTCAACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
323 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * *
19783971 TAGGTGGGTTTAGGCGCATCTTCATATTTTCTACATGCCAATGCCATTTTTATGGCATGTAAATT
388 TAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* * *
19784036 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAATTGTTTCCTATTTTTC
452 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* ** * *
19784101 ATGATTTTCAAAACTTTTTACCGTTTGGGATTTTTTAAAATTTTTTCGAAAAGG-GTTTTGGCCC
517 ACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-AAAAGGAGTTTTGGCCC
* * * *
19784165 CTAACTTGGTAGACATGATCCTT-CATTTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACT
581 CAAACTTGGTAGACATGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
19784229 CGAAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTA
645 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
19784294 -TTGCAGCAAACGTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
710 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
19784358 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCC
775 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * *
19784423 CTCCCCCCGATCATCGGAACCCCAATGCCACCGATTAGGTTCTCCGAC
840 C-CCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGAC
* ** * * *
19784471 GATGGTACCCTGGTGAAGAAACGTGCGGCACCTGCACGTGCCCGAGCCCAGCATGTGCTGTCGTA
1 GATGGTGCCCTGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTA
19784536 ACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTC
66 ACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTC
* * * * *
19784601 CGTATGCCTAAGTCAACCGACGAAACGAG-GATGCGGGTGCTCATCCGGCCGAGGGACAGGATGC
131 CGTATGCCTAAGTCAACCCACGAAACGAGCG-TACGGGCGCTCAACCGGCCGAGGG-CGGGATGC
* * * * * * *
19784665 GTAAGCCGAGGATCGGTCGGGTCCCCCTTTGTGAGCTATCGATCCTGTTGTCGCAACCCTCACTC
194 GCAAGCCGAGGATCGATCGGGTCCCCCTCTGTGTGCTATCGATCCTGCTGCCGCAACCCTCAGTC
** *
19784730 CGGTTTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGG
259 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-AGCGG
* * * ** * *
19784795 GCGGGCAGGCGGGAACTACGCCGGCTAGAGAGACAAGATGCGTAAGCCGTGGATTGATAGGGTGG
323 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
19784860 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAGTGCCATTTTTATGGCTTGTAAATTC
388 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
*
19784925 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTGCA
453 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * * *
19784990 TGATTTTTGAAATTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCA
518 CGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCA
*
19785055 AAC----T-----TG------GTA--------GGCATGCACAAAAAAATTCAGCCAAAAACTCGA
583 AACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * *
19785097 AGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTG
648 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
19785162 GCAGCAAACCTGTAAAATCCCAAATGCTCTTTAAAGGGGTGGGAGTTCTTGAGGTTTGATGAGGG
713 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
19785227 ATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACAGCATGTGCGCACACACCCCCC
778 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCC
*
19785292 CGGCCCTTCGATCG-CTAGAACCCCAATGCCGCC-AGTCAGGTTCTCTGGCGATGCTCC
842 C--CCC--CGATCGTC-GGAACCCCAATGCCGCCGA-TCAGGTTCTC---CGA-----C
***** * * *
19785349 GGTGATGGTGCCCCAACAAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCC
1 ---GATGGTGCCCTGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC
** * *
19785414 GTAACCCTCGGTCCAG-TCTAATCTTAGACTGGGAATGAAC-TCTGTATGCTTAGATTGGGAATG
63 GTAACCCTCGGTCTGGTTC-GATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATG
* * * * * *
19785477 AACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCTAGAGGGGCGA
126 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGC-CGA-GGGCGG
* * * ** * *
19785542 GATGCGCAAGTCGGGGACCGATCGGGTCCCCCTCTCCGTGCTATGGATCCTGCTGCCGCAACCAT
189 GATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGTGTGCTATCGATCCTGCTGCCGCAACCCT
* * * * *
19785607 CGGTCCGGTCCAATCTTAGACTGGTAATGAACTCCGTATGCCTAAGCCAATCGATGAAAC-A--A
254 CAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCA
* * *
19785669 GCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAAAGACGAGATGCGCAAGCCGTGGATCGATAGG
319 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
19785734 GTGGTAGGTGGGTTTAGGTAGATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
384 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* * * ** *
19785799 ATCCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTGCTCTACTT
449 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * *
19785864 TTCATGATTTTTGAAACTTTTTATGGTTCGGGA-TTTTTAAAAATTTTTCGAAAGGATTTTTGGC
514 TTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGC
* *
19785928 CCTAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGTTAAAAAC
579 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
19785993 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
644 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
19786058 ACTGGCAGCAAACCAGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
709 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * * *
19786123 AGAGATAGGGGGCCAATATAAGGGCGAAGTACAAGCACCCATTGCACATCATGTACGCACACCCC
774 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* *
19786188 CTCGGCCCCCCGATCGTCGGAACCCTAATGCCACCGATCAGGTTCTCTGGCGATGCTCCGAC
839 C-C--CCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGG-----T-----T-CTCCGAC
* ** * *
19786250 GATGGTGCCCCGAAGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCCGCATGTGCTGCCGTA
1 GATGGTGCCCTGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTA
19786315 A-CC-C--TC--G---G----T---CT--G---G---TTCG-AT-CTTAGACTGGGAATGAACTC
66 ACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTC
* * * **
19786354 CGTATGCCTAAGTCATCCCACGAAACGAGCGTACGGGCGCTTAACTGGCCAGAGTGGCGAAATGC
131 CGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCC-GAG-GGCGGGATGC
* ** * * * *
19786419 GCAAGCC-AGAGATCGATCAGGTCCCCCTCTGCCTGTTACCGATCTTGCTGCCGCAACCCT-TGA
194 GCAAGCCGAG-GATCGATCGGGTCCCCCTCTGTGTGCTATCGATCCTGCTGCCGCAACCCTCAG-
* * * * *
19786482 TCCGGTCCAATCTTATACTGGGAATAAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
257 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-AGC
* * *
19786547 GGGCGGGCCGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
321 GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
*
19786612 GGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
386 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
19786677 TCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
451 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
** ** * * *
19786742 CACGATTTTCAAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTTTTCAGATGGAGTTTTGGCCC
516 CACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCC
* * * * * * *
19786807 CAAATTTGGTAGACGTGATCCTTGTATTTTTTTTGGGATACCCAAAAAAATTCAGCTAAAAAATC
581 CAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
19786872 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAC
646 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * *
19786937 TGGGAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAAGTTTGATGAG
711 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
19787002 GGATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCC
776 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCC
** * * *
19787067 CGGGCCCCCTAATCG-CTGGAACCCCAATGCCGTCGGGCAGGTTCTCCGACGATGCTCCGAC
840 C---CCCCCCGATCGTC-GGAACCCCAATGCCG-C---C--G--AT-C-A-GGTTCTCCGAC
* * *
19787128 GATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCAAATGCCTGAGCCCAGCATGTGCTGTCGTA
1 GATGGTGCCCTGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTA
19787193 A-CC-C--TC--G---G-TC-T----T--G--T---C--CG-AT-CTTAGACTGGGAATGAACTC
66 ACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTC
* * * *
19787232 CGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGCTTGAAGGGTGGGATGC
131 CGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGC-CG-AGGGCGGGATGC
** * * * *
19787297 GCAAGTTGAGGATCGATCGGGTCCCCCTCTGCT-TGCTATCGATCCTACTACCGCAACCTTCTGT
194 GCAAGCCGAGGATCGATCGGGTCCCCCTCTG-TGTGCTATCGATCCTGCTGCCGCAACCCTCAGT
* * * *
19787361 CTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGGCTAAGCTAACCGACGAAAC--G-AGCGG
258 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGCGG
* * * *
19787423 GCGGGCGGGCTGGCACTACGCTGGCCTGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGG
323 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
19787488 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTGT-GCTTGTAAATTC
388 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
19787552 ACACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATATTTCA
453 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * *
19787617 CGATTTTTGAAAGTTTTTGCGGTTCGGGATTTTTCAAAATTTTTTCAGAAGGGGTTTTGGCCCCA
518 CGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCA
* * *
19787682 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCAAAAAACTCGA
583 AACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * *
19787747 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAAATACTTTAATGGCTACTG
648 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
19787812 GCACCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGG-GTGAGTTCTCGAGGTTTGATGAGGG
713 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
*
19787876 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCTGG
778 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC---
* *
19787941 CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
840 CCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGAC
* ** ** *
19787988 GATGCTTCGGCGATGGTGCCTCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGTAT
1 GA----T--G-G-T-G-CCCT-GGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * * *
19788053 TTGCTGTCGTAACCATTGATCCGG-TCTGATCTTAGACTGGGAATGAACTCCGTATGC
55 GTGCTGTCGTAACCCTCGGTCTGGTTC-GATCTTAGACTGGGAATGAACTTCGTATGC
19788110 CTAAGCCAAA
Statistics
Matches: 3909, Mismatches: 456, Indels: 310
0.84 0.10 0.07
Matches are distributed among these distances:
860 11 0.00
861 1 0.00
862 1 0.00
863 1 0.00
864 1 0.00
865 89 0.02
866 119 0.03
867 7 0.00
868 4 0.00
869 3 0.00
870 31 0.01
871 77 0.02
872 254 0.06
873 289 0.07
874 115 0.03
875 4 0.00
876 209 0.05
877 298 0.08
878 480 0.12
879 11 0.00
880 7 0.00
881 154 0.04
882 111 0.03
883 16 0.00
884 9 0.00
885 109 0.03
886 200 0.05
887 283 0.07
888 342 0.09
889 343 0.09
890 6 0.00
892 4 0.00
893 1 0.00
894 2 0.00
895 2 0.00
896 3 0.00
897 3 0.00
898 85 0.02
899 6 0.00
900 207 0.05
901 1 0.00
902 2 0.00
903 1 0.00
906 3 0.00
908 1 0.00
909 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
GATGGTGCCCTGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTA
ACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTC
CGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCGAGGGCGGGATGCGC
AAGCCGAGGATCGATCGGGTCCCCCTCTGTGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCCG
GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGCGGGCG
GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAAC
TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCCCC
CGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGAC
Found at i:19785472 original size:26 final size:26
Alignment explanation
Indices: 19785436--19785488 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19785426 CCAGTCTAAT
19785436 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
19785462 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
19785488 C
1 C
19785489 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:19789817 original size:711 final size:713
Alignment explanation
Indices: 19788441--19789838 Score: 2237
Period size: 711 Copynumber: 2.0 Consensus size: 713
19788431 GGCAGGTGGG
* * * * *
19788441 CGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATTCGCAAGCCGAGGATCGATAGGGTGGT
1 CGGGCAGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGAGGATCGATAGGGTGGC
* * *
19788506 AGGTGGGTTTAGGCACATCTTCATATTTTTACGTACCAATGCCATTTTTATGGCTTGTAAATTCA
66 AGGTGGGTTTAGGCACATCTTCATATTTCTACATACCAATGCCATTTCTATGGCTTGTAAATTCA
* *
19788571 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCCAGACGACTCGTTTTTTATTTTTCAC
131 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCCAAACGACTCGTTTTCTATTTTTCAC
* * * *
19788636 AATTTTTGAAAACTTTTTGTGGGTCGAGATTTTTTAAAATTTTTTCGGAATGAGGTTTGGCCCCA
196 AATTTTTGAAAACTTTTTGCGGGTCGAGATTTTTTAAAATTTTTGCAGAAGGAGGTTTGGCCCCA
* *
19788701 AATTTGGTAGAAGTGATCCTTGTATTATTTTGGGCATGCACAAAAAAAGTCAGCTAAAAACTGGA
261 AACTTGGTAGAAGTGATCCTTGTATTATTTTGGGCATGCACAAAAAAAGTCAGCTAAAAACTCGA
*
19788766 AGTGTACAAGATTTTTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGTTACTGG
326 AGTGTACAAGATTTTTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGG
*
19788831 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGA
391 CAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGA
* *
19788896 TAGGGGGCCAATATAAGGGCCAGGTACCAGCACCCATCACACATCATGTGTGCACACCCCCTGGC
456 TAGGGGGCCAATATAAGGGCCAGGTACCAACACCCATCACACATCATGTGTACACACCCCCTGGC
* * ***
19788961 CCTCCGATCGCCGGAACACCAATGCTGCCGGTCAGGTTCTCCAACGATGCTCCGGTGATGGTGCC
521 CCCCCGATCGCCGGAACACCAATGCCGCCGGTCAGGTTCTCCAACGATGCTCCAACGATGGTGCC
19789026 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAGT
586 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAGT
19789091 CCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCGACCGACGAAACGAGCGGA
651 CCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCGACCGACGAAACGAGCGGA
* * * *
19789154 CGGGCAGGCGGGCATTACGCCGACCATAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGC
1 CGGGCAGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGAGGATCGATAGGGTGGC
* *
19789219 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTCTATGGCTTGTAAATTCA
66 AGGTGGGTTTAGGCACATCTTCATATTTCTACATACCAATGCCATTTCTATGGCTTGTAAATTCA
* * *
19789284 TACAATGGTCCCTTCAGCCTTCACGTGAAGTTTCATGGCGAAACGACTCGTTTTCTATTTTTCAT
131 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCCAAACGACTCGTTTTCTATTTTTCAC
* * *
19789349 GATTTTTG-AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTGCAGAAGGAGTTTTGGCCCC-
196 AATTTTTGAAAACTTTTTGCGGGTCGAGATTTTTTAAAATTTTTGCAGAAGGAGGTTTGGCCCCA
* * *
19789412 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA-TCAGCTAAAAACTCGA
261 AACTTGGTAGAAGTGATCCTTGTATTATTTTGGGCATGCACAAAAAAAGTCAGCTAAAAACTCGA
*
19789476 AGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCAATTTCAGACACTTTAATGGCTACTG
326 AGTGTACAAGATTTT-TGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTG
* * *
19789541 GCAGTAAACCTGTAAAATCTCAAATGGTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
390 GCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGG
** *
19789606 ATAGGGGGTGAATATAAGGGCCAGGTACCAACACCCATCACACATCCTGTGTACACACCCCCTGG
455 ATAGGGGGCCAATATAAGGGCCAGGTACCAACACCCATCACACATCATGTGTACACACCCCCTGG
* *
19789671 CCCCCCGATCGTCGGAACACCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAACGATGGTGC
520 CCCCCCGATCGCCGGAACACCAATGCCGCCGGTCAGGTTCTCCAACGATGCTCCAACGATGGTGC
** * **
19789736 CCCGACGAAGAAAAATGGGGCACCAGCATATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTC-G
585 CCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAG
* * *
19789800 ATCCGGTCCGCTCTTAGACTGGGAATGAACTTCGTATGC
650 -TCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGC
19789839 TTAGACTGGG
Statistics
Matches: 626, Mismatches: 57, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
710 31 0.05
711 363 0.58
712 49 0.08
713 183 0.29
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (713 bp):
CGGGCAGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGAGGATCGATAGGGTGGC
AGGTGGGTTTAGGCACATCTTCATATTTCTACATACCAATGCCATTTCTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCCAAACGACTCGTTTTCTATTTTTCAC
AATTTTTGAAAACTTTTTGCGGGTCGAGATTTTTTAAAATTTTTGCAGAAGGAGGTTTGGCCCCA
AACTTGGTAGAAGTGATCCTTGTATTATTTTGGGCATGCACAAAAAAAGTCAGCTAAAAACTCGA
AGTGTACAAGATTTTTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGA
TAGGGGGCCAATATAAGGGCCAGGTACCAACACCCATCACACATCATGTGTACACACCCCCTGGC
CCCCCGATCGCCGGAACACCAATGCCGCCGGTCAGGTTCTCCAACGATGCTCCAACGATGGTGCC
CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAGT
CCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCGACCGACGAAACGAGCGGA
Found at i:19789864 original size:26 final size:26
Alignment explanation
Indices: 19789812--19789864 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19789802 CCGGTCCGCT
*
19789812 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGCATG
19789838 CTTAGACTGGGAATGAAC-TCTGCATG
1 CTTAGACTGGGAATGAACTTC-GCATG
19789864 C
1 C
19789865 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGCATG
Found at i:19791530 original size:871 final size:872
Alignment explanation
Indices: 19789193--19793435 Score: 5024
Period size: 925 Copynumber: 4.7 Consensus size: 872
19789183 AGACGGGATG
* * * * *
19789193 CGCAAGCCGTGGATTGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
1 CGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAA
* *
19789258 TGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTCAGCCTTCACGTGAAGTTTCATGGC
66 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* *
19789323 GAA-ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAA
131 -AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
* * *
19789387 TTTTTGCAGAAGGAGTTTTGGCCCC-AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
195 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
19789451 ACAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCA
260 ACAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTGAAAAAAGTGTCCCC
* * *
19789516 ATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGGTCCTTAAGGGGGT
324 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
** * * *
19789581 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGTGAATATAAGGGCCAGGTACCAACACCCATCA
389 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* ** * *
19789646 CACATCCTGTGTACACACCCCCTGGCCCCCCGATCGTCGGAACACCAATGCCGCCGGTCAGGTTC
454 CACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCG-CGGTCAGGTTC
* * *
19789711 TCCGACGATGCTCCAACGATGGTGCCCCGACGAAGAAAAATGGGGCACCAGCATATGCCCGAGCC
518 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCGAGCC
* * * * * *
19789776 CAGCATGTGCTGCTGCAACCCTCGATCCGGTCCGCTCTTAGACTGGGAATGAACTTCGTATGCTT
583 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
19789841 AGACTGGGAATGAACTCTGCATGCCTAAGTCAACCCAGGAAACGAGCG-CCCAGGCTCTCAGCCG
648 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACGAGCGTGCC-GGCGCTCAGCCG
* * * * * ** *
19789905 GCCAGAAGGGTGGGATGCGCAAACCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCGATCTTG
712 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGAGTCCCCCTCTACGTGCTACCGATCCTG
* * * * *
19789970 CTG-AAGTAACCCTAGGTCTGGTCCAATCTTAGACTAGG-ATGAA-TTCCATATGCCTAAGCCAA
777 CTGCCA-CAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTT-CATATGCCTAAGCCAA
*
19790032 CCAACGAAACGAGCGGGCGGGCAGGCGGGCACTACGC
840 CCGACGAAACGAGCGGGCGGG-A--CGGGCACT-CGC
*
19790069 CGTCCAGAGAGACGGGATGTGCAAGCTATGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCT
1 CG--C------A----A-GT-----C-ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
19790134 TCATATTTCTACATGCCAATGCTATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCT
47 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
** *
19790199 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCCAAACTTATTACG
112 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
*
19790264 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTCGGCCCCAAACTTGGTAGACGTGATCCCT
177 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT-CCT
* *
19790329 T-TA-TTTTGTTGGCATGCACACAAAAAATCAGCTAAAAACTCAAATTGTACAAGATTTTGTGAC
241 TGTATTTTTGTTGGCATGCACA-AAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
19790392 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACTTGTAAAATCT
305 CA-TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
19790457 CAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGG
369 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * *
19790522 CCAAGTACCAGCACCAATCGCACAACATGCGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACC
434 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACC
** * * * * *
19790587 ATAACGCCGCTGGTCTGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCG
498 CCAATGCCGC-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGAG
* *
19790652 ACACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACT
562 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACT
* * * *
19790717 GGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATACCTAAGTCAACCCACGAAACG
627 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACG
* * * * *
19790782 AGCGTACCGGCGCTCAGCCGACCATAGGGGCGGGATGCGTAAGCCGGGGATCGATCGAGTCCCCC
692 AGCGTGCCGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGAGTCCCCC
* * * *
19790847 TCTATGTGCTACCGATCCTGGTGCCACAACCCTCGGTCCGATCCAATCTTAGACTGGGATTGAAC
757 TCTACGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAAC
* *
19790912 TTCGTATGCCTAAGCCAACCGATGAAACGAGCGGGC-GGACGGG-A-T-G-
822 TTCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGACGGGCACTCGC
* * *
19790958 CGCAAGTCATGGATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTGCATGCCAA
1 CGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAA
** *
19791023 TGAGATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGC
66 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * *
19791088 AAGACGACTCGTTTTTTATTTTTCATGATTTTTAAAACTTTTTACGGTTTGGGAATTTTAAAAAT
131 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* *
19791153 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGTCGTTATCCTTGTATTTTTGTTGGCATGCA
196 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
19791218 CAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCACTTGGAAAAAGTGTCCCC
261 CAAAAAAA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTGAAAAAAGTGTCCCC
* * * *
19791283 ATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGAAAAATTTAAAATGCTCTTTAAGGGGGT
324 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
19791348 GTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
389 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
19791413 CACATCATGTGCGCACACCCCCCGGCCACTCCGATCG-CTGAAACCCCATTGCCGCAGGTCAGGT
454 CACATCATGTGCGCACACCCCCCGGCC-CCCCGATCGTC-GGAACCCCAATGCCGC-GGTCAGGT
* * *
19791477 TCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAGAAATGAAGCACCAGCATATGCCCGAG
516 TCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCGAG
* * *
19791542 CCCAGTATGTGCTACCGCAACCCTCGGTCCGG-TCTGATCTTAGACTGGGAATGAACTCCGTATG
581 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATG
* ** * *
19791606 CTTAGACTGGGAATGAACGCTTTATGCCTAAGTCAACCCAGGAAACGAGTGTGCGGGCGCTCAGC
645 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACGAGCGTGCCGGCGCTCAGC
* * * * * *
19791671 TGGCCAGAGGGGCGGGATGCGTC-AGTCGGGGATCGGCCGAGTCCCCCTCTGCGTGCTGCCAATC
710 CGGCCAGAGGGGCGGGATGCG-CAAGCCGGGGATCGACCGAGTCCCCCTCTACGTGCTACCGATC
* ** * * * * * *
19791735 CTGCTACCGTAACCGTCGGTTCGGTCCGATCTTAGATTGGGAATGAAC-TCTATATGCCTAAGCC
774 CTGCTGCCACAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTTC-ATATGCCTAAGCC
19791799 AACCGACGAAACGAGCGGACGGACGGGCAGGCGGGCACTACGCCGGC
838 AACCGACGAAACGAGC-G--GG-CGGG-A--CGGGCACT----C-GC
* *
19791846 CAGAGAGATGGGATGTGCAAGTCATGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTTAT
1 C---------------GCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*** * * *
19791911 ATTTCTTTGTACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCAT
51 ATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* *
19791976 GTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTGTTCACT-ATTTTTGAAACTTTTTACGGTT
116 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTTTGAAACTTTTTACGGTT
* * * * * *
19792040 TGGTATTTTTTAAAATTTTTTTGGAAGGAGCTTTGGCCCCAAACTTGGTAGATGTGATACTTGTA
180 CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* *
19792105 TTTTTGTTGGCATGCAAAAAAAAAATCGGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
245 TTTTTGTTGGCATGC-ACAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * *
19792170 CGAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTACTGGTAGCAAACCTGTAAAATCTCAAA
309 -GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * *
19792235 TGCTCTTTAAGAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAA
373 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * *
19792300 GTACCAGCACCCATTGCACATCATGCGCGCACACCCCTTCGGCCCCCTCGATCGTCGAAACCCCA
438 GTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCC-CGATCGTCGGAACCCCA
** **
19792365 ATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTAACGATGGTGCCCCGACGAAGAAAAAT-ACGGC
501 ATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGA-GGC
* * *
19792429 ACCAGCACATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCGGTTTGGTCCGATCTTAGACTGG
564 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC------G---G----T---CT-G
*
19792494 GAATGAACTCCGTATCCTTAGACTGTGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
612 G--T----T-CG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * * *
19792559 ATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCTCTCAACCGGCCAGAGGGGTGAGATGCGCA
668 ATGCCTAAGTCAACCCAGGAAACGAGCGTGCCGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * ** * *
19792624 AGCCAGGGATCGATCGGGT-CCACTCTATATGCTATCGATCCTGCTGCCACAACCCTCAGTCCGA
733 AGCCGGGGATCGACCGAGTCCCCCTCTACGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCGA
* * * *
19792688 TCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAGGAAACGAGCGGACGGACG
798 TCCAATCTTAGACTAGGAATGAACTTCATATGCCTAAGCCAACCGACGAAACGAGC-G--GG-CG
*
19792753 GG-CGGTCACTACGC
859 GGACGGGCACT-CGC
19792767 CAGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
1 C-G-C----A-A---G-T---C-A----TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
** *
19792832 TCATATTTCTATGTGCCAATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
47 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * **
19792897 TCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACT-ATTTTTGAAACTTTCTGT
112 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTTTGAAACTTTTTAC
* * * * * * *
19792961 GGTTCGGGATTTTTTTAAATTTTTTTGGAAGTATTTTTTGCCCCATATTTGGTAGACGTGATCCT
176 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
19793026 TGTATGTTTGTTGGCATGCATAAAAAAAATCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGAC
241 TGTATTTTTGTTGGCATGCA-CAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * * *
19793091 CATTTGAAAAAAGTTTCCCCATTTCATACACTTTAATGGCTAATGCCAGCAAACCTGTAAAATCT
305 CA-TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
19793156 CAAATGCTCTTTAAGGGGGTGTGAGTTATTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
369 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
19793221 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCTGGGCCCTCCGATCG-CAGGAA
434 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCC-CGGCCCCCCGATCGTC-GGAA
* * * * *
19793285 CCCCAATGCTGTCGGTTAGGTTCTCCGACGATTCTCTGGCGATGGTGCCCCGACGAAGAAAAATG
496 CCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
* * * *
19793350 CGGCACGC-GCACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAG
560 AGGCAC-CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAG
19793414 ACTGGGAATGAACTCCGTATGC
624 ACTGGGAATGAACTCCGTATGC
19793436 CTATGCCGAC
Statistics
Matches: 2908, Mismatches: 328, Indels: 239
0.84 0.09 0.07
Matches are distributed among these distances:
869 4 0.00
870 226 0.08
871 526 0.18
872 1 0.00
874 2 0.00
875 1 0.00
876 6 0.00
877 2 0.00
878 1 0.00
879 4 0.00
880 1 0.00
881 2 0.00
884 1 0.00
887 2 0.00
888 2 0.00
889 3 0.00
890 1 0.00
892 1 0.00
893 1 0.00
894 7 0.00
895 207 0.07
896 215 0.07
897 290 0.10
898 38 0.01
899 28 0.01
900 2 0.00
901 2 0.00
902 2 0.00
903 423 0.15
904 120 0.04
905 2 0.00
906 1 0.00
907 1 0.00
908 3 0.00
909 2 0.00
910 1 0.00
912 2 0.00
913 2 0.00
916 2 0.00
917 2 0.00
919 1 0.00
920 2 0.00
921 6 0.00
922 1 0.00
924 2 0.00
925 533 0.18
926 11 0.00
928 2 0.00
929 95 0.03
930 116 0.04
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (872 bp):
CGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAA
TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
CAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTGAAAAAAGTGTCCCCAT
TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
CATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCGGTCAGGTTCTCC
GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAG
CATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACGAGCGTGCCGGCGCTCAGCCGGCCA
GAGGGGCGGGATGCGCAAGCCGGGGATCGACCGAGTCCCCCTCTACGTGCTACCGATCCTGCTGC
CACAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTTCATATGCCTAAGCCAACCGACG
AAACGAGCGGGCGGGACGGGCACTCGC
Found at i:19792561 original size:26 final size:26
Alignment explanation
Indices: 19792484--19792562 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
19792474 TTGGTCCGAT
*
19792484 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATG
*
19792510 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19792536 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19792562 C
1 C
19792563 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19794436 original size:712 final size:710
Alignment explanation
Indices: 19792665--19794885 Score: 3117
Period size: 712 Copynumber: 3.1 Consensus size: 710
19792655 CTATCGATCC
*
19792665 TGCTGCCACAACCCTCA-GTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCACAACCCT-AGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
19792729 ACCGAGGAAACGAGCGGACGGACGGGCGGTCACTACGCCAGCCAAAGAGACGGGATGCGCAAGCC
65 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC-GAGAGACGGGATGCGCAAGCC
*
19792794 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTT
129 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
* * *
19792859 CTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
194 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGAC
* * * * * *
19792924 TCGTTTTCTATTTTTCACT-ATTTTTGAAACTTTCTGTGGTTCGGGATTTTTTTAAATTTTTTTG
259 TCGTTTTCTATTTTTCA-TGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCG
* * * * * * * *
19792988 GAAGTATTTTTTGCCCCATATTTGGTAGACGTGATCCTTGT-ATGTTTGTTGGCATGCATAAAAA
323 AAAGGA-GTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAAT-TTTGTTGGCATGCACAAATA
* * * *
19793052 AAATCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCA
386 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
* *
19793117 TACACTTTAATGGCTAATGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
451 AACACTTTAATGGCTACTG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
19793182 TATTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
515 TCTTCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
** * * *
19793247 ATGTGCGCACACCACCCTGGGCCCTCCGATCG-CAGGAACCCCAATGCTGTCGGTTAGGTTCTCC
580 ATGTGCGCACACC-CCCCCGGCCC-CCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *
19793311 GACGATTCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACGC-GCACATGCCTGAGCCCA
642 GATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCAC-CAGCACATGCCTGAGCCCA
19793375 GCATG
706 GCATG
** * * * * *
19793380 TGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCGA
1 TGCTGCCACAACCCTAGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
19793445 CCGACAAAAC-ACGCGGGTGGGCGGGCGAGCACTTCGCCGGTCAGAGAGACGGGATGCGCAAGCC
66 CCGACGAAACGA-GCGGGCGGGCGGGCGGGCACTACGCCGG-CCGAGAGACGGGATGCGCAAGCC
* *
19793509 GTGGATCGATAGGGTGGTAGGTGGGTTTATGCACATCTTCATATTTCTACGTGCCAATGCCATTC
129 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
* * *
19793574 TTATGGCTTGTAAATTCATAAAATGCTCCTTTAAGCCTTCACATGAAGTTTCATGGCAAGACGAC
194 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGAC
* * * *
19793639 TCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAAATTTTTTAATATTTTTTCGA
259 TCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGA
* **
19793704 AAGGAGTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTAATTTTGTTGAAATGCACAAATAAAT
324 AAGGAGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTGTTGGCATGCACAAATAAAT
* **
19793769 TCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGAAGATTTGAAAAAAGTGTCCCCATTTTAAAC
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAAC
* *
19793834 ACTTTAATGGCTACTGCTAGCAAACTTGTAAAATCTCCAATGCTCTTTAAGGGGGTGTGAGTTCT
454 ACTTTAATGGCTACTGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
19793899 TCAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCATGTACAAGCACCCATCGCACATCATG
518 TCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
*
19793964 TGCGCACACCCCCCCGGCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGA
583 TGCGCACACCCCCCCGGCCCCC-GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGA
** * * *
19794029 TGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCTGAACCCAGTATG
647 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATG
* * * *
19794093 TGCTGCCACAACCCTAGGTTCGGTCTGATCTTAGACTGGGACTGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTAGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
19794158 CTGACGAAACGAGTGGGCGGGCGGGCGGGCACTACACCGGCCGAGAGACGGGATGCGCAAGCCTT
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCGAGAGACGGGATGCGCAAGCCGT
* * *
19794223 GGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
131 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
*
19794288 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATTAAGTTTCATGGCAAGACGACTC
196 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTC
* *
19794353 GTTTTCTATTTTTCTTGATTTTCGAAGCTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAA
261 GTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAA
* * * *
19794418 GGAGTTTGGCCCCAAACTTGGTAGAGGTGATCTTTTTATTTTTGTTGGCATGCACAAATAAATTC
326 GGAGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTGTTGGCATGCACAAATAAATTC
* * *
19794483 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTTAGACAC
391 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACAC
* * * *
19794548 TTTAATAGCTACTGGCGGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGCTC-TC
456 TTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTC
* *
19794612 AAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
520 -AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
19794677 GCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCTCAATGCCACCGATCAGGTTCTCCGATGA
584 GCGCACACCCCCCCGG--CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGA
* * ** * *
19794742 TGCTCCGATGATGGTGCCCTGACGAAGAAAAATGTAGCACTAGCAGATGCCTGAGCCCAGCATG
647 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATG
* * * * *
19794806 TGCTACCGCAACCCTAGGTCCGATCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
1 TGCTGCCACAACCCTAGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
19794871 TAC-ACGAAACGAGCG
66 -CCGACGAAACGAGCG
19794886 TACGGGCGCT
Statistics
Matches: 1327, Mismatches: 164, Indels: 32
0.87 0.11 0.02
Matches are distributed among these distances:
711 2 0.00
712 451 0.34
713 345 0.26
714 243 0.18
715 285 0.21
716 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (710 bp):
TGCTGCCACAACCCTAGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAA
GGAGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTGTTGGCATGCACAAATAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACAC
TTTAATGGCTACTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTCA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCCGGCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCT
CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATG
Found at i:19797608 original size:876 final size:868
Alignment explanation
Indices: 19794113--19798167 Score: 5435
Period size: 876 Copynumber: 4.7 Consensus size: 868
19794103 ACCCTAGGTT
* * *
19794113 CGGTCTGATCTTAGACTGGGACTGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGTGGGCGG
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
** * *
19794178 GCGGGCGGGCACTACACCGGCC-GAGAGACGGGATGCGCAAGCCTTGGATCGATAGGGTGGTCGG
66 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
19794242 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
131 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * **
19794307 AATGGTCCCTTAAGCCTTCACATTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCTTGAT
196 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * *
19794372 TTTCGAAGCTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAG-TTTGGCCCCAAACT
261 TTTTGAAACTTTTTGCGGTTCGAGA-TTTTTAAAACTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * * * *
19794436 TGGTAGAGGTGATCTTTTTATTTTTGTTGGCATGCACAAATAAATTCAGCTAAAAACTCAAAGTG
325 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * *
19794501 TACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTTAGACACTTTAATAGCTACTGGCGG
390 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
19794566 CAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGCTCTCAAAGTTTGATGAGGGATAG
455 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
*
19794631 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCC
520 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CC
* * * *
19794696 CCCCGATCGTCGGAACCTCAATGCCACCGATCAGGTTCTCCGATGATGCTCCGATGATGGTGCCC
584 CCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* ** * * *
19794761 TGACGAAGAAAAATGTAGCACTAGCAGATGCCTGAGCCCAGCATGTGCTACCGCAACCCT-AGGT
649 CGACGAAGAAAAATGCGGCACCAGCACATGCC-GAGCCCAGCATGTGCTACCACAACCCTCA-GT
* * * * ** *
19794825 CCGATCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAATACACGAAACGAGCGTACG
712 -CGGTCCGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * *
19794890 GGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGTCGGGGATCGGTTGGGTCCCCCTCTACGTG
776 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGG-CGGGTCCCCCTCTGCGTG
*
19794955 CTGTCGATCCTGCTGCCGCAACCCTCGATC
840 CTGT-GATCCTGCTGCTGCAACCCTCGATC
* * * * *
19794985 CGGTCTGATCTTAAATTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGCGGACGG
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* * * * *
19795050 GCGGGTGGGCACTACATCGGCCAGGGAGACGGGATGCACAAGCCCTGGATCGATAGGGTGGTAGG
66 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
*
19795115 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAAGCCATTTTTATGGCTTGTAAATTCATAC
131 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
19795180 GATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAGGACACGTTTTC------T----AT
196 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * *
19795235 TTTT-AAAC-TTTTGCAGTTTGAGATTTTTTAAAAGTTTTTCGGAAGAAGTTTTGCCCCCAAACT
261 TTTTGAAACTTTTTGCGGTTCGAGA-TTTTTAAAACTTTTTCGGAAGGAGTTTTGGCCCCAAACT
19795298 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
325 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
19795363 TACAAGATTTTGTGACCATTCGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
390 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
19795428 CAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCAAGATTTGATGACGGATAG
455 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
*
19795493 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGACG
520 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGC-
* * * * *
19795558 GCCCCGATCATTGGAACCCTAATGCCACCAGTCAGGTTCTCCGACGATGCT-CGAGCGATGGTGC
583 CCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGC
** * * *
19795622 CCCGGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
647 CCCGACGAAGAAAAATGCGGCACCAGCACATGC-CGAGCCCAGCATGTGCTACCACAACCCTCAG
* * * *
19795687 TTCGGTCCGATATTAGACTGGGAATGAACTCCGTT-TGCCTAAGTTAACCCACGAAATGAGAGTG
711 -TCGGTCCGATCTTAGACTGGGAATGAACTCC-TTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * *
19795751 CGGGCGCTCAGCTGGCCAGAGGGGCGGGATGTGCAAGTCGGGGATCAGCCGGGTCCCCCTCTGCG
774 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATC-GGCGGGTCCCCCTCTGCG
* * *
19795816 TGCTGCAGATCCTG-TGGTTGCAACCCTCGGTC
838 TGCTG-TGATCCTGCT-GCTGCAACCCTCGATC
* * * * * **
19795848 TGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGGAGCGAACGG
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* * * * * *
19795913 GC-GG-GTG--CTACGTCGACTAGAGAGACGGGATGCGCAAGTCATGTATCGATAGGGTGGTAGG
66 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * *
19795974 TGGGTTTACGCACAT-TTACATATTTCTACATGCCAATGCCTTTTTTATTGCTTGTAAATTCATA
131 TGGGTTTAGGCACATCTT-CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
19796038 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTTACG-
195 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * *
19796102 TTTTTCAAAACTTTTTGCGGTTCGGGATTTTT-AAACTTTTTTGGAAGGAGTTTTGGCCCCAAAC
260 TTTTT-GAAACTTTTTGCGGTTCGAGATTTTTAAAACTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * ** *
19796166 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-TAAAAAATTCAAATAAAAACTCAAAGT
324 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
19796230 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTCATGGCCACTGGTA
389 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * **
19796295 GCAAACCTGTAAAATCTCAAATGCTATTTAAAGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATA
454 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
*
19796360 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACA-CCCCCCGGCC
519 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
* * ** * * *
19796424 CTCCGATCGTTGGAACCCCAATGCCACCGGTCAGGTTC-CCTGGTGATGCTCCGATGATAGCGCC
584 CCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCC-GACGATGCTCCGACGATGGTGCC
* * * * * *
19796488 CAGGCGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAATCCTCGGT
648 CCGACGAAGAAAAATGCGGCACCAGCACATG-CCGAGCCCAGCATGTGCTACCACAACCCTCAGT
* * * * *
19796553 CTGGTCTGATCTTAGACTAGGAATGAACT-CTGTATGCCTAAGTCAACCCACGAAACGACCATTC
712 C-GGTCCGATCTTAGACTGGGAATGAACTCCT-TATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * *
19796617 GGGCGCTCAACCGGCAAGAGGGGCGGGATGCACAAGTCGGGGATCGATCGGGTCCCCCTCTGTGT
775 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCG-GCGGGTCCCCCTCTGCGT
* * * *
19796682 GCTGCTAATCCAGCT-ATCGCAACCCTC-AGTT
839 GCTG-TGATCCTGCTGCT-GCAACCCTCGA-TC
* *
19796713 CGGT-TAGATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCGACGAAACGAGCGGGCG
1 CGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-
* *
19796777 GGTGGACAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTG
64 -G-GG-CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
19796842 GTAGGTGGGTTTAGGCACATCTTCATATTTCTAGGTGCCAATGCCATTTTTGTGGCTTGTAAATT
126 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATT
* * *
19796907 CATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGATTCATTTTCTATTTTTC
191 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
** * * *
19796972 ACGATTTTTGAAACTTTTTATGGTTCCAGATTTTTAAAAATTTTTGGGAAGGA-TTTTGGGCCCC
256 ACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTAAAACTTTTTCGGAAGGAGTTTT-GGCCCC
* *
19797036 AAACTTGGTAGTCGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
320 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
19797101 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATAGCTACT
385 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
19797166 GCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTCAAGGTTTGATGAGG
450 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
*
19797231 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCC
515 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * ** *
19797296 GGCCCCCCGATCGCCGGAACCCCAATACCGTCGGTCAGGTTCTCCGACGATGCTCTGACGATGGT
580 GGCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGT
* *
19797361 GCCCCGACGAAGAAAAATGTGGCACCAGCACATGACCGAGCCCAGCATGTGCTGCCACAACCCTC
645 GCCCCGACGAAGAAAAATGCGGCACCAGCACATG-CCGAGCCCAGCATGTGCTACCACAACCCTC
* *
19797426 AGTACGGTCCGATCTTAAACTGGGAATGAACTCCTTATGCCTAAGTCAACCCATGAAACGAGCGT
709 AGT-CGGTCCGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * *
19797491 GCGGGCGCTCAGTCGGCCAGAGGGGCGGAATGCGCAAGCCGGGGATTGGCAGGGTCCCCCTCTGC
773 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGC-GGGTCCCCCTCTGC
*
19797556 ATGCTGTGGATCCTGCTGCTGCAACCCTCGATC
837 GTGCTGT-GATCCTGCTGCTGCAACCCTCGATC
* * ** * *
19797589 CGGTCTGATCGTAGACTGGGAATGAACTCCGTATGCTTAAGCCAATTGATGAAACGAGTGGGCGG
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--
* * * * *
19797654 GTGAGCGGGTGGGCACTACGTCTGCCAGAGAGATGGGATGCGTAAGCCGTGTATCGATAGGGTGG
64 G-G-GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * *
19797719 TAGGTGGGTTTAGGCACATCTTCGTATTTGTCCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
127 TAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* * * *
19797784 ATACAATGGTCCATTAAGCCTTCATGTGAAGTTTAATAGCAAGACGACTCGTTTTCTATTTTTCA
192 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * *
19797849 TGATTTTTGAAACCTTTTGCAGTTCGAGATTTTTTAAACTTTTTTGGAAGGAGTTTTGGCCCCAA
257 CGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTAAAACTTTTTCGGAAGGAGTTTTGGCCCCAA
* * ** *
19797914 ACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAAATAAAAACTTGAA
322 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
19797979 GTGTACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
387 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
19798044 CAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTC-GGGTTTGATGAGGGA
452 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
* *
19798108 TAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGTGCAC-CCCCC
517 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
19798168 TAAATGCGGC
Statistics
Matches: 2791, Mismatches: 331, Indels: 120
0.86 0.10 0.04
Matches are distributed among these distances:
858 2 0.00
859 149 0.05
861 37 0.01
862 253 0.09
863 306 0.11
864 12 0.00
865 281 0.10
866 13 0.00
867 2 0.00
868 201 0.07
869 65 0.02
870 11 0.00
871 14 0.01
872 77 0.03
873 334 0.12
874 71 0.03
875 262 0.09
876 688 0.25
877 13 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (868 bp):
CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
TTTTGAAACTTTTTGCGGTTCGAGATTTTTAAAACTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
CCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
ACGAAGAAAAATGCGGCACCAGCACATGCCGAGCCCAGCATGTGCTACCACAACCCTCAGTCGGT
CCGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
TCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCGGGTCCCCCTCTGCGTGCTGTGA
TCCTGCTGCTGCAACCCTCGATC
Found at i:19799164 original size:26 final size:26
Alignment explanation
Indices: 19799135--19799187 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19799125 CCGATCCGAT
19799135 CTTAGACTAGG-AATGAACTCCGTATG
1 CTTAGA-TAGGCAATGAACTCCGTATG
* *
19799161 CTTAGATTGGCAATGAACTCTGTATG
1 CTTAGATAGGCAATGAACTCCGTATG
19799187 C
1 C
19799188 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGATAGGCAATGAACTCCGTATG
Found at i:19800976 original size:43 final size:43
Alignment explanation
Indices: 19800912--19800996 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 43
19800902 GTGCTGTCGC
* * *
19800912 AACCCTCGGTCCGGTCAGATCTTATACTGGGAATGAACTCCGT
1 AACCCTCGATCCGGTCAGATCTTAGACTAGGAATGAACTCCGT
* * *
19800955 AACCCTCGATCTGGTCTGATCTTAGACTAGGAATTAACTCCG
1 AACCCTCGATCCGGTCAGATCTTAGACTAGGAATGAACTCCG
19800997 AATGCCTAAG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (43 bp):
AACCCTCGATCCGGTCAGATCTTAGACTAGGAATGAACTCCGT
Found at i:19802446 original size:26 final size:26
Alignment explanation
Indices: 19802410--19802462 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19802400 CTGATTTAAT
19802410 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19802436 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19802462 C
1 C
19802463 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19804548 original size:717 final size:713
Alignment explanation
Indices: 19802575--19804768 Score: 3161
Period size: 718 Copynumber: 3.1 Consensus size: 713
19802565 TTGCTACTGC
* ** * * * *
19802575 AACCCTCAGTCTGGTTTGATCTTAGATTGGGAATGAACTTCGTATGCCAAAGCCAACCGACGAAA
1 AACCCTCAGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * *
19802640 CGAGCGAGCGGGCGGGTGGGCACTACCCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGAT
66 CGAGCGGGCGGGCGGGTGGGCACTACGCTGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGAT
* *
19802705 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATTGCTTG
131 AGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTG
* * *
19802770 TAAATTCGTACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTTGTTTTCTA
196 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* ** * **
19802835 TTTTTCACGATTTTGGAAACTTTTTGCGGTTCA-GGATTTTTTAAAATTTTTTCAGAGGGAGTTT
261 TTTTTCTC-ATTTTCAAAACTTTTTGCGGTT-AGGGATTTTTTAAAATTTTTTTAGAAAGAGTTT
* * *
19802899 T-GCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTTTTGGTATGCATAAAAAAAATCAGCTAA
324 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAAATCAGCTAA
* *
19802963 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAT
388 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * *
19803028 GGCTAAT-GTAGCAAA-CCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTT
453 GGCTACTGGCAGCAAAGCC-GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * * *
19803091 TGATGAGGGATAGGGGGCCAGTATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGTAC
517 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGTGCGCAC
* *
19803156 ACCCCCTCCGGCCCCCCCGATCGTCGGAACCCCATTGCCGCCGGTCAGGTTCTCCGACGATGCTC
582 ACCCCCTCCGGCCCCTCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
* * * * *
19803221 CGACGATGGTGCCCCGGTGAAGACAAATGCGGCACCAGCAAATGCCCGAGCCCAGCATGCACTGT
647 CGACGATGGTGCCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGCGCTGC
19803286 CGT
711 CGT
* ***
19803289 AACCCTCGGTGTAGTCCGATCTTAGACT-AGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 AACCCTCAGTCCGGTCCGATCTTAGACTGA-GAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * *
19803353 ATGAGCGGGAGGGTGGGCGGGTGGGCACTACGTTGGCCAGAGAGACGAGATGCCCAAGCCGTGGA
65 ACGAGC----GGGCGGGCGGGTGGGCACTACGCTGGCCAAAGAGACGGGATGCGCAAGCCGTGGA
* *
19803418 TCGATAGGGTGGTAGATGGGTTTAGGTG-CATCTTCATATTTCTATG--TGCCAATGCCTTTTTT
126 TCGATAGGGTGGTAGGTGGGTTTAGG-GACATCTTCATATTT-T-TGCATGCCAATGCCATTTTT
*
19803480 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTC
188 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * *
19803545 ATTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGCTAGGGATTTTTTAAAA-TTTTTTCGAA
253 GTTTTCTATTTTTC-TCATTTTCAAAACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTTAGAA
*
19803609 ACGAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAT
317 A-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAT
* * *
19803674 CAGCTAAAAACTTGAAGTGTACAAAATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
381 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
19803739 CTTTAATGGCTACTGGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTCAGGGCGTGTGAGTTTTC
446 CTTTAATGGCTACTGGCAGCAAAGCCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
19803804 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCGATCGCACATCATGT
511 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGT
* ** * * *
19803869 GCACACACCCCCCTCCGGCCCCTCCGATCACCGGAACCCCAATGCCACCAGTCAGGTTCTCCGGC
576 GCGCACA-CCCCCTCCGGCCCCTCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
*
19803934 GATGCTCCGACGATGGTGCCCCGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
640 GATGCTCCGACGATGGTGCCCCGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
*
19803999 TGCTGCCGT
705 CGCTGCCGT
* *
19804008 AACCCTCAGTCCGCTTCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
1 AACCCTCAGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * *
19804073 CGAGCGGGCGGACGGGGGGGCACTACGCTGGCCAAAGAGATGGGATGCGCAAGCCATGGATCGAT
66 CGAGCGGGCGGGCGGGTGGGCACTACGCTGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGAT
*
19804138 AGGCTGGTAGGTGGGTTTAGGGACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTG
131 AGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTG
* * *
19804203 TAAATTCATACAGTGGTCCCTTAAACCTTCACGTGAGGTTTCATGGCAAGACGACTCGTTTTCTA
196 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * *
19804268 TTTTTCGTCATTTTCAAAACTTTTCGCAGGTTTGGGATTTTTTAAAATTTTTTTGGAAAGAGTTT
261 TTTTTC-TCATTTTCAAAACTTTTTGC-GGTTAGGGATTTTTTAAAATTTTTTTAGAAAGAGTTT
*
19804333 TGGCCCCAAACTTGGTAGACGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAA
324 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAAATCAGCTAA
*
19804398 AAACTCGAAGTGTACACGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
388 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
19804463 GGCTACTGGCAGCAAAGCCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
453 GGCTACTGGCAGCAAAGCCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
19804528 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATTGCACATCACGTGCGCACA
518 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGTGCGCACA
* * * * *
19804593 -CCCC-CCGGCCCCTCCGATCGTCGAAACCCCAATACCGCCGGTCAAGTTCTCCGACAATGGTCC
583 CCCCCTCCGGCCCCTCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
* * * *
19804656 GGCGATGGTGCCTCACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCC-GACATGCGCTGCC
648 GACGATGGTGCCCCGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG-CATGCGCTGCC
19804720 GT
712 GT
* * * *
19804722 AACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCTGTATGC
1 AACCCTCAGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGC
19804769 TTAGACTGGG
Statistics
Matches: 1315, Mismatches: 142, Indels: 46
0.87 0.09 0.03
Matches are distributed among these distances:
713 3 0.00
714 209 0.16
715 193 0.15
716 69 0.05
717 217 0.17
718 292 0.22
719 256 0.19
720 76 0.06
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (713 bp):
AACCCTCAGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCGGGCGGGCGGGTGGGCACTACGCTGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCTCATTTTCAAAACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTTAGAAAGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATCAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAAGCCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGTGCGCACACCC
CCTCCGGCCCCTCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGAC
GATGGTGCCCCGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGCGCTGCCGT
Found at i:19804778 original size:26 final size:26
Alignment explanation
Indices: 19804742--19804794 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19804732 CCGGTCCGAT
* *
19804742 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19804768 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19804794 C
1 C
19804795 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19806418 original size:26 final size:26
Alignment explanation
Indices: 19806379--19806431 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19806369 CCGATCCGAT
*
19806379 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
19806405 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
19806431 C
1 C
19806432 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:19808032 original size:26 final size:26
Alignment explanation
Indices: 19807974--19808033 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
19807964 CCTCAGTTTG
19807974 ATCCA-ATG-TTAGACTAGGAATGAA
1 ATCCATATGCTTAGACTAGGAATGAA
* * *
19807998 CTCTATATGCTTAGACTGGGAATGAA
1 ATCCATATGCTTAGACTAGGAATGAA
*
19808024 ATCCGTATGC
1 ATCCATATGC
19808034 CTAAGTCAAC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
24 3 0.11
25 3 0.11
26 22 0.79
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (26 bp):
ATCCATATGCTTAGACTAGGAATGAA
Found at i:19808483 original size:708 final size:673
Alignment explanation
Indices: 19807625--19808987 Score: 1635
Period size: 672 Copynumber: 2.0 Consensus size: 673
19807615 GCATTCACAA
* * * * * ** *
19807625 AAAAAATCATCTAAAAATTCAAAGTGCACACGATTTTCTGACCATTTGAAAAAGTGTCCCTATTA
1 AAAAAATCAGCTAAAAACTCAAAGGGCACAAGATTTTCTGACAATTTGAAAAAGTAACCCCATTA
*
19807690 TAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
66 TAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
19807755 GTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACAAGCACCCATTGCACA
131 GTTCTCGAGGTTTGATGAGGGATAGGGGACAAATATAAGGGCCAAGTACAAGCACCCATCGCACA
* * ** * * *
19807820 TCATGTTCGCACA-CCCCCAGCCTCTTCGATCGCCGGAACCCCAATGCCACCGGTCAAGTTCTCC
196 TCATGTGCGCACACCCCCCAGCCCCCCCAATCCCCGAAACCCCAATGCCACCGGTCAAGTTCTCC
19807884 GGAGATGCTCCGGGGATGGTGCCCCG-CGAAGAAAAATGCAGCACCAGAACATGCCCGAACCCAG
261 ---GA-----C---GATGGTGCCCCGACGAAG-AAAATGCAGCACCAGAACATGCCCGAACCCAG
** * *
19807948 CATGTGCTGCTGCAACCCTCAGTTTGATCCAATGTTAGACTAGGAATGAACTCTATATGCTTAGA
314 CATGTGCTGCCACAA-CC-C---TTG-------G-T---C--CG---G---TCT-GAT-CTTAGA
* * * *
19808013 CTGGGAATGAAATCCGTATGCCTAAGTCAACCTACGAAACGAGCATGCGGGCACTCAATCGGCCA
353 CTGGGAAAGAAATCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAACCCGCCA
** * **
19808078 GAGGGGCGGGATGCGCAAGCCAGGGATCGA-CTGGG-TCCACTTCTGTGTGCTGTCGATCCTGCT
418 GAGGGGCAAGATGCGCAAGCCAGGGATCGATC-GGGTTCC-CCTCTGCATGCTGTCGATCCTGCT
* * ** *
19808141 -ACAGCAACCCTCGGTCTGGTCTGATATTAGACTGGGAGTGAACTCCGTATGCCTAAGCCAACCG
481 GACA-CAACCCTCGATCCGGTCCAATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* *
19808205 ACGAAACGAGCGG-A-CGGGCGGGCGGGCACTACGCTGGCTAGAGAGACGAGATGCGCGAGCCAT
545 ACGAAACGAGCGGAAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGAGATGCGCAAGCCAT
*
19808268 GGATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCATATTTCTGCATGCAAATGCCATTTG
610 GCATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCATATTTCTGCATGCAAATGCCATTTG
* *
19808332 AAAAAATCAGCTAAAAACTCAAAGGGTACAAGATTTTGTGACAATTTGAAAAAAGTAACCCCATT
1 AAAAAATCAGCTAAAAACTCAAAGGGCACAAGATTTTCTGACAATTTG-AAAAAGTAACCCCATT
* *
19808397 -TCAAACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
65 AT-AAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
19808461 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCA
129 GAGTTCTCGAGGTTTGATGAGGGATAGGGGACAAATATAAGGGCCAAGTACAAGCACCCATCGCA
* * * *
19808526 CATCATGTGCGCATACCCCCCGGCCCCCCCAATCCCCGAAACCCCAATGCCGCCGGTCAGGTTCT
194 CATCATGTGCGCACACCCCCCAGCCCCCCCAATCCCCGAAACCCCAATGCCACCGGTCAAGTTCT
* * *
19808591 CCGACGATGGTGCCCCGACGAAGAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
259 CCGACGATGGTGCCCCGACGAAGAAAATGCAGCACCAGAACATGCCCGAACCCAGCATGTGCTGC
* * *
19808656 CACAACCCTTGGTCCGGTCTGATCTTAGACTGGTAAAGAACTTCGTATGCCTAAGTCAACCCACG
324 CACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAAAGAAATCCGTATGCCTAAGTCAACCCACG
* * * * *
19808721 AAACGAGCGTGCGGGCGCTCAGCCCGCCAGAGGGGCAAGATGCGTAAGCCGGGGATCGATCGGGT
389 AAACGAGCATGCGGGCACTCAACCCGCCAGAGGGGCAAGATGCGCAAGCCAGGGATCGATCGGGT
* *
19808786 TCCCCTCTGCATGCTGTCGATCCTGCTGTCACAACCCTCGATCCGGTCCAATCTTAGACTGGGAA
454 TCCCCTCTGCATGCTGTCGATCCTGCTGACACAACCCTCGATCCGGTCCAATATTAGACTGGGAA
* * *
19808851 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAACGGCGGGCGGGCGGGCATTATGTT
519 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAA--GCGGGCGGGCGGGCACTACGCT
* ** * *
19808916 GGCCAGAGAGATGAGATGCGCAAGCTGTGCCTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
582 GGCCAGAGAGACGAGATGCGCAAGCCATGCATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTT
19808981 CATATTT
647 CATATTT
19808988 TTACGTGCCA
Statistics
Matches: 575, Mismatches: 70, Indels: 53
0.82 0.10 0.08
Matches are distributed among these distances:
672 178 0.31
673 9 0.02
674 3 0.01
676 82 0.14
677 1 0.00
680 1 0.00
682 1 0.00
685 1 0.00
686 1 0.00
693 3 0.01
696 1 0.00
697 2 0.00
698 54 0.09
699 5 0.01
701 1 0.00
706 2 0.00
707 42 0.07
708 146 0.25
709 42 0.07
ACGTcount: A:0.27, C:0.26, G:0.26, T:0.21
Consensus pattern (673 bp):
AAAAAATCAGCTAAAAACTCAAAGGGCACAAGATTTTCTGACAATTTGAAAAAGTAACCCCATTA
TAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
GTTCTCGAGGTTTGATGAGGGATAGGGGACAAATATAAGGGCCAAGTACAAGCACCCATCGCACA
TCATGTGCGCACACCCCCCAGCCCCCCCAATCCCCGAAACCCCAATGCCACCGGTCAAGTTCTCC
GACGATGGTGCCCCGACGAAGAAAATGCAGCACCAGAACATGCCCGAACCCAGCATGTGCTGCCA
CAACCCTTGGTCCGGTCTGATCTTAGACTGGGAAAGAAATCCGTATGCCTAAGTCAACCCACGAA
ACGAGCATGCGGGCACTCAACCCGCCAGAGGGGCAAGATGCGCAAGCCAGGGATCGATCGGGTTC
CCCTCTGCATGCTGTCGATCCTGCTGACACAACCCTCGATCCGGTCCAATATTAGACTGGGAATG
AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAAGCGGGCGGGCGGGCACTACGCTGGCC
AGAGAGACGAGATGCGCAAGCCATGCATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCATA
TTTCTGCATGCAAATGCCATTTG
Found at i:19809581 original size:26 final size:26
Alignment explanation
Indices: 19809552--19809631 Score: 142
Period size: 26 Copynumber: 3.0 Consensus size: 26
19809542 CCGGTTCGAT
19809552 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
19809578 CTTAGACTGGGAATGAACTCCTGTATG
1 CTTAGACTGGGAATGAACT-CTGTATG
*
19809605 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
19809631 C
1 C
19809632 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
26 26 0.50
27 26 0.50
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:19809609 original size:27 final size:27
Alignment explanation
Indices: 19809552--19809631 Score: 146
Period size: 27 Copynumber: 3.0 Consensus size: 27
19809542 CCGGTTCGAT
19809552 CTTAGACTGGGAATGAACT-CTGTATG
1 CTTAGACTGGGAATGAACTCCTGTATG
19809578 CTTAGACTGGGAATGAACTCCTGTATG
1 CTTAGACTGGGAATGAACTCCTGTATG
19809605 CTTAGACTGGGAATGAACTCC-GTATG
1 CTTAGACTGGGAATGAACTCCTGTATG
19809631 C
1 C
19809632 CTAAGTCAAC
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 25 0.47
27 28 0.53
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCTGTATG
Found at i:19810516 original size:26 final size:26
Alignment explanation
Indices: 19810480--19810532 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19810470 CCGGTCTGAT
*
19810480 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19810506 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19810532 C
1 C
19810533 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19811357 original size:903 final size:900
Alignment explanation
Indices: 19808679--19815194 Score: 7813
Period size: 903 Copynumber: 7.3 Consensus size: 900
19808669 CCGGTCTGAT
* * *
19808679 CTTAGACTGGTAAAGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * *
19808744 CCGCCAGAGGGGCAAGATGCGTAAGCCGGGGATCGATCGGGTTCCCCTCTGCATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
** **
19808809 TGCTGTCACAACCCTC-GATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGTCGTAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
19808873 ACCGACGAAACGAGCGGAACGGCGGGCGGGCGGGCATTATGTTGGCCAGAGAGATGAGATGCGCA
195 ACCGACGAAACGAGC-G-ACGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCA
* ** * * *
19808938 AGCTGTGCCTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATACC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCC
*
19809003 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTAT-ACATGAAGTTTCATGGCAAG
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT-TCACGTGAAGTTTCATGGCAAG
* ** * *
19809067 ACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTTTGGTTTGAGATTTTCTAAAATTTT
387 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * * *
19809132 TTCGGAAGGAGTTTTGGCCCCAAACTT-G-AGATGTGATCCTTGTATTTTTGCTGGCATGAACAA
452 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
19809195 AATAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAATAGTGTCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
19809260 TCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTAAGGGGGTGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
19809324 AGTTCTCAAAGGTTTGATGAGGGATAGGGGGCCAATAT-AGGGGC-AGTAACCCA-CACCCATCG
647 AGTTCTC-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT-A-CCAGCACCCATCG
* *
19809386 CACATTCATGTGCGTACA-CCCCCGGCCCCCT-GATCCG-CTGGAA-CCCAATGCTGCCGATCAG
709 CACA-TCATGTGCGCACACCCCCCGGCCCCCTCGAT-CGTC-GGAACCCCAATGCCGCCGATCAG
* * * *
19809447 GTTCTCCGGTGAAAGC-CCGGCGATAGTGCCTCGACGAAGAAAAATACGTCACCAGCACATGCCC
771 GTTCTCCGGCG-ATGCTCCGACGATAGTGCC-CGACGAAGAAAAATACGACACCAGCACATGCCC
* * *
19809511 GAGCCCCGCATGTGCTGTCGCAACCCTCACTCCGGTTCGATCTTAGACTGGGAATGAACTCTGTA
834 GAGCCCAGCATGTGCTGTCGTAA----C-CT----TT-GGTC-----C---G---G---TCTG-A
* *
19809576 TGCTTAGACTGGGAATGAACTCCTGTATG
874 T-CTTAGATTGGGAATGAACTCC-ATATG
* * *
19809605 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACTAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** *
19809670 CGGCTAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCAGGTCCCTCTCTGCGTTTTGCCGATCA
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * *
19809735 TGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCTAA
131 TGCTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
19809800 TCGACGAAACGAGCGACGGGTGGGCGGGTGGTCACTACGTCGACCAGAGAGAC-AGGATGCGCAA
196 CCGACGAAACGAGCGAC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGA-GATGCGCAA
* * *
19809864 GCCATGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCA
* *
19809929 TTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
19809994 GACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* *
19810059 CGAAAGGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTGGTATATTTT-TTGGCATGCACAAA
454 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAA
19810123 AAAATTCAGCTAAAAACTC-AACGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
518 AAAATTCAGCTAAAAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
19810187 TCAGACAC-TTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
19810251 TGTTCTCGAGGTTTGATCAGGGATAGGGGGCCAATATAAGGGCCCAGTACCAGCACCCATCGCAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
19810316 ATCATGTGTGCACACCCCCCGGCCCCCTCGATCATCGGAATCCCAATGCCGCCAATCAGGTTCTC
712 ATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTC
* ** *
19810381 CAGCGATGCTCCGGTGATAGTGCTCCGACGAAGAAAAATACGACACCAGCACATGCTCGAGCCCA
777 CGGCGATGCTCCGACGATAGTGC-CCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCA
*
19810446 GCATGTACTGTCGTAACCTTTGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCATATG
841 GCATGTGCTGTCGTAACCTTTGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCATATG
* * * *
19810506 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAAGGAGTGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *** * *
19810571 CGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTTGGGTCCCCCTCTGTGTGCTGCCCATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
19810636 TGCTGTCGTAACCCTCAGTTCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
19810701 CCGACGAAACGAGCGGAACGGCGGGCGGGCGGGCATTATGTTGGCCAGAGAGATGAGATGCGCAA
196 CCGACGAAACGAGC-G-ACGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAA
* ** * *
19810766 GCTGTGCCTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCA
*
19810831 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAA
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
19810896 GACAT-GTTTTCTATTTTTCACGATTTTTGAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
389 GAC-TCGTTTTCTATTTTTCACGATTTTTG-AAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* *
19810960 TT-GAAAGAAGTTTT-GCCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATTCACA
452 TTCGAAAGGAGTTTTGGCC-CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
19811023 AAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCCCAT
516 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
19811088 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGATCTTTAAGGGGGTGT
581 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
19811153 GTGTTCTCGAGGTTTGATCAGGGATAGAGGGCCGATATAAGGGCCAAGTACCAGCACCCATCGCA
646 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
19811218 CATCATGTGTGCACACCCCTCGGCCCCCTCGATCGTCGGAATCCCAATGCCGTCGATCAGGTTCT
711 CATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCT
* ** * * *
19811283 CCAGCGATGCTCCGGTGATAGTGCTCTGACGAAGAAAAATGC-AGCACCAGCACATGCTCGAGCC
776 CCGGCGATGCTCCGACGATAGTGC-CCGACGAAGAAAAATACGA-CACCAGCACATGCCCGAGCC
* * * *
19811347 CAGCATGTACTGTCGTAATCTTTGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCATATG
839 CAGCATGTGCTGTCGTAACCTTTGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCATATG
* * * *
19811409 CTTAGACTAGGATTGAACTCCGTATGCCTAAGTCAACCTACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ***
19811474 CGGCTAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTTGGGTCCCCCTCTGCGTGCTGCTC-ATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGC-CGATC
* * * * *
19811538 CCGCTGTCGTAACCCTCAGTTCGGTCTGATCTTATACTTGGAATGAACTCCGTATGCCTACGCCA
130 CTGCTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * **
19811603 GTCGACG-AA--A-CGA--GCGGGCGGGCGGGCACTACGCCGGCCAGAGAAAC-AGGATAAGCAA
195 ACCGACGAAACGAGCGACGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGA-GATGCGCAA
* * *
19811661 GCCGTCGATCGATAGGGTGATAGGTGAGTTT-GGCACATCTTCATATTTTTGCATG-CAATTGCC
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAA-TGCC
* * * *
19811724 ATTTTTATGGCATGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAGGTATCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * *
19811789 CGACTCATTTTTTATTTTTCAGGATTTTTGAAACTTTTTACGGTTTGTGACTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * *
19811854 TCAAAAGGAGTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTATGCACAAA
453 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
19811919 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * * *
19811984 CAGACACTTAAATGGCTACTGGTAGCAAACCTGTAAAATCTCTAATGCTCTTTTAGCGGTTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
19812049 GTTCTCGAGGTTTGATGAGGGATTA-TGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
648 GTTCTCGAGGTTTGATGAGGGA-TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
19812113 ATCATGTGCGCACACGCCCCCGGCCCCCTCGATCGTCAGAACCCCAATGCCGTC-AGTCAGGTTC
712 ATCATGTGCGCACAC-CCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGA-TCAGGTTC
* * * * * ** *
19812177 TCCGGTGATGCTCCGATGATGGCGCCCCAACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
775 TCCGGCGATGCTCCGACGATAGTG-CCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCC
* * * * * * * *
19812242 TAGCATGTGCTATCGTAACCCTCGATCCAGTCCGATCTTAGATTGGGAATGAACTCTATATG
839 CAGCATGTGCTGTCGTAACCTTTGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCATATG
* * * *
19812304 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
19812369 CGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGACCAGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * ** * * * *
19812434 TGCTGCCACAACCCTCAGTCCAGTCCAATCTTAGACAGGGAATGAACGCCATATGCGTAAGCCAA
131 TGCTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
19812499 CCGACGAAATGAGCGGGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGCTGCGTAA
196 CCGACGAAACGAGC-GACGG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAA
* * * *
19812564 GCCGAGGATCGATAGGTTGGAAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCA
* *
19812629 TTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
19812694 GACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* *
19812759 CGAAAGGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
454 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * *
19812824 GAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGGCCATTCGAAAAAAGTGCCCCCATTTC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
19812889 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
19812954 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTGCCAGCACCCATTGCACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
19813019 CATGTGTGCACACCCCCCGACCCCCT--ATCG-CTGGAACCCCAATGCCGTCGGTCAGGTTCTCC
714 CATGTGCGCACACCCCCCGGCCCCCTCGATCGTC-GGAACCCCAATGCCGCCGATCAGGTTCTCC
* *
19813081 GGCGATGCTCCGACGATGGTGCCCCGACGAAAAAAAATACGACACCAGCACATGCCCGAGCCCAG
778 GGCGATGCTCCGACGATAGTG-CCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAG
* * * * ** * *
19813146 CATGTGCTGCCATAACCCTCGGTCCGGTCTGATCTTAGGCTGGGAATGAACGCCGTATG
842 CATGTGCTGTCGTAACCTTTGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCATATG
* * * * *
19813205 CTTAGACTGGGAATGAACTCCGTATGCCTAGGTCAACCCATGAAACGAGCGTACGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
19813270 CAGCAAGAAGGGCGGGATGTGCAAGCCGGGGATCGACCGAGTCCCCCTCTGCGTGCTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * *
19813335 TGCTACCATAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAAACTCCGTATGCCTAAGCCA
131 TGCTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATG-AACTCCGTATGCCTAAGCCA
* * * * * * *
19813400 ATCGATG-AA--A-CGA--GCGGGCAGGCGGGCTCTACGCCAGCCAGAGAGACGGGATGCGCAAG
195 ACCGACGAAACGAGCGACGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAG
* *
19813459 TCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCAT
* * *
19813524 TTTTATGGCTTGTAAATTCATTCAATGGTCCCCTAAGCCTTCACGTGAAGTTTGATGGCAAGACG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * **
19813589 ACTCGTTTTTTATTTCTCACGATTTTTGAAACTTTTTGTGGTTC-AGGATTTTTTAAAATTTTTT
390 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTT
* * * * *
19813653 CGGAAGGAGCTTTGG-CCCAGACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
454 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
19813717 AAAATCTGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATGTC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
19813782 AGACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAA-GGGGCGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
19813846 TTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCAACCATTGCACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
19813911 CATGTGCGCGCACCCTCCCTGGCCCCC-CTAATCATCGGAACCCCAATGCCACCGGTCAGGTTCT
714 CATGTGCGCACACCC-CCC-GGCCCCCTC-GATCGTCGGAACCCCAATGCCGCCGATCAGGTTCT
* * * *
19813975 CCGGCGATGCTCCGACGATGGTGCCTCGACGAAGAAAAAAACGGCACCAGCACATGCCTGAGCCC
776 CCGGCGATGCTCCGACGATAGTGCC-CGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCC
* ** * *
19814040 AGCATGTGCTGCCACAA-C------CC--TC-GGTC------T--G---G---T-CAGAT-
840 AGCATGTGCTGTCGTAACCTTTGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCATATG
* * * *
19814075 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTTAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
19814140 CGGCCAGAGGAGCGGGATGTGCAAGCCGGGGATCGACCGGGT----CTC-AC-T-CTG-C-A---
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
19814193 TGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
19814258 CCGACGAAATGAGCG--GGCAGGCGGGCGGGCTCTACGCCGGCCAGAGAGGCCG-GATGTGCAAG
196 CCGACGAAACGAGCGACGGCGGGCGGGCGGGCACTACGTCGGCCAGAGA-GACGAGATGCGCAAG
* *
19814320 CCGTGGATCGATAGGGTGGTAGTTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCAT
*
19814385 TTTTATGGCTTGTAAATTCATA-AATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
19814449 AATCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGATTCGAGATTTTTTTAAATTTTTTC
390 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * * * *
19814514 GGAAGGAGTTTTTGCCCTAAACTTGGTAGACGTGACCCTTGTATTTTTGTTGGCATGCATAAAAA
455 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* **
19814579 CATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTTTAAAAAGTGTCCCCATTTCA
520 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * * *
19814644 GATACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTTAGGAGGCGTGAGT
585 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* ** * *
19814709 TCTCGAGGTTTGATGAGGTATAGGGGGCCAATATAAGCACCAAGTACCAGTACCCATCACACATC
650 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
19814774 ATGTGCGTAC-CCCCGCC-GCACCCT-GATTGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
715 ATGTGCGCACACCCC-CCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCG
* * * * * * *
19814836 ACGATGGT--G-C-CTCG-G--C-A--AAGAAAAATACGACGCCAACACATGCCCGAACCCAGCA
779 GCGATGCTCCGACGATAGTGCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCA
** * * *
19814891 TGTGCTACCGCAACC-CT--T--GGTCTG------G-TT-CG-AT---CT---TA--
844 TGTGCTGTCGTAACCTTTGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCATATG
* * * *
19814926 C----ACTGGGAATGAACTCCGTATGCCTAAGTCAACACATGAAACGAGCATGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * **
19814987 TGGCC-GAGGATCGGGATGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGC--G-T---G---C
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
19815042 T--T-TCGTAACCCTCGGTCTGCTCCGATCTTAGACTAGGAATGAACTCCATTTGCCTAAGCCAA
131 TGCTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
19815104 CAGACGAAATGAGCGGGCGGGCGGACGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAA
196 CCGACGAAACGAGC-GAC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAA
19815169 GCCGTGGATCGATAGGGTGGTAGGTG
259 GCCGTGGATCGATAGGGTGGTAGGTG
19815195 ACCATTTGAA
Statistics
Matches: 4939, Mismatches: 551, Indels: 276
0.86 0.10 0.05
Matches are distributed among these distances:
846 99 0.02
847 101 0.02
848 1 0.00
849 5 0.00
850 66 0.01
851 5 0.00
852 3 0.00
853 1 0.00
854 3 0.00
855 1 0.00
856 1 0.00
857 25 0.01
858 79 0.02
859 5 0.00
860 110 0.02
861 278 0.06
862 78 0.02
863 3 0.00
864 1 0.00
865 1 0.00
866 3 0.00
870 95 0.02
871 3 0.00
875 1 0.00
878 1 0.00
880 1 0.00
886 3 0.00
887 2 0.00
889 2 0.00
892 82 0.02
893 195 0.04
894 590 0.12
895 384 0.08
896 106 0.02
897 3 0.00
898 3 0.00
899 3 0.00
900 3 0.00
901 482 0.10
902 344 0.07
903 600 0.12
904 399 0.08
905 3 0.00
907 1 0.00
910 1 0.00
913 1 0.00
918 3 0.00
919 2 0.00
923 2 0.00
924 5 0.00
925 234 0.05
926 262 0.05
927 154 0.03
928 99 0.02
929 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGACGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGC
GATGCTCCGACGATAGTGCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATG
TGCTGTCGTAACCTTTGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCATATG
Found at i:19812329 original size:26 final size:26
Alignment explanation
Indices: 19812278--19812330 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19812268 CCAGTCCGAT
*
19812278 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGATTGGGAATGAACTCCATATG
*
19812304 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCATATG
19812330 C
1 C
19812331 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:19813215 original size:26 final size:26
Alignment explanation
Indices: 19813179--19813231 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19813169 CCGGTCTGAT
*
19813179 CTTAGGCTGGGAATGAACGCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
*
19813205 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
19813231 C
1 C
19813232 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCGTATG
Found at i:19815551 original size:26 final size:26
Alignment explanation
Indices: 19815513--19815565 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19815503 CCAGTCTGAT
*
19815513 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19815539 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19815565 C
1 C
19815566 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19817075 original size:898 final size:896
Alignment explanation
Indices: 19815192--19817420 Score: 3076
Period size: 898 Copynumber: 2.5 Consensus size: 896
19815182 AGGGTGGTAG
* * * *
19815192 GTGACCATTTGAAAAAAGTGTCCTCATTTCATACATTTTAATGGCTACTGGCGGCAAACCTGTAA
1 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
19815257 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
66 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
19815322 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCTGGGCCCCCCGATCGCCA
131 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCGATCGTCA
* * *
19815387 GAACCGCAATGCTGTCGGTCAGGTTCCCCGGTGATGCTCCGACGAT-GTTGCCCCGATGAAGAAA
195 GAACC-CAATGCCGTCGGTCAGGTTCCCCGGTGATGCTCCGGCGATGGTT-CCCCGACGAAGAAA
* * * * * *
19815451 AATGAGGCAGCAGCACATGCCC-AACCTAGCATGTGCTACTGCAACCCTCGCTCC-AGTCTGATC
258 AATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGA-TCTGATC
*
19815514 TTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
322 TTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * * * *
19815579 CGAAACGAGCGTACGGGCACTCAACTGGGCAGAAGGGTGGAATGCGTAAGCCCGAGATTGGCCGG
387 CGAAACGAGCGTACGGGCGCTCAGCCGCG-AGAGGGGTGGGATACGCAAGCCCGAGATCGGCCGA
* * * * *
19815644 GTCCCCCTCTATGTGCAATCAATCCTACTGCGGCTACCCTCGGTCTGGTCTGATCTTAGACTGGG
451 GTCCCCCTCTACGTGCAACCAATCCTACTGCGGCAACCCTCGGTCCGGTATGATCTTAGACTGGG
* * * * *
19815709 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAATGGGCGGATGGGCGGGCAGGCACTATA
516 AATGAACTCCGCATACCTAAGCCAACCGACG-AAC-AATGAGCGGACGGGCGGGCAGGCACTACA
* * *
19815774 CCGACCAGATAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
579 CCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATC
* * * *
19815839 TTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCCTACAATGGTCCCTTAAGCC
644 TTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCC
19815904 TTCACGTGAAGTTTAATGGCAAGACGACTCGTTTCTATTTTTCATGATTTTCAAAATTTTTACGG
709 TTCACGTGAAGTTTAATGGCAAGACGACTCGTTTCTATTTTTCATGATTTTCAAAATTTTTACGG
* * **
19815969 TTCCAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTATCCCCAAACTTGGTAGATGTGATCCTTG
774 TTCCAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTG
19816034 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTT
839 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTT
* *
19816092 GTGACCATTTCAAAAAAGTTTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
1 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * *
19816157 AATCTCAAATGATCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACAT
66 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* *
19816222 AAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGTCCCCCCGATCGTCG
131 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCA
* * *
19816287 GAACCCTAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTTCCCCGACGAAGAAAA
195 GAACCC-AATGCCGTCGGTCAGGTTCCCCGGTGATGCTCCGGCGATGGTTCCCCGACGAAGAAAA
* * * * *
19816352 ATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTTGGACCGATCCGATATT
259 ATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGATCTGATCTT
* * * * *
19816417 TGACTGGGAATAAACTTCGTATGCGTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACA
324 AGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * *
19816482 AAACGAGCGTACGGGCGCTCAGCCGACGAGAGGGGTGGGATACGCAAGTCGGGGATCGGCCGAGT
389 AAACGAGCGTACGGGCGCTCAGCCG-CGAGAGGGGTGGGATACGCAAGCCCGAGATCGGCCGAGT
** * *
19816547 CCCCCT-TGACGTGCTGCCCATCCTACTATC-GCAACCCTCGGTCCGGTATGATCTTAGACTGGG
453 CCCCCTCT-ACGTGCAACCAATCCTACT-GCGGCAACCCTCGGTCCGGTATGATCTTAGACTGGG
* * **
19816610 AATGAACTGCGCATACCTAAGCCAACCGACG-A-AATGAGCGGACGGGCGGGCGGGCACTACGTC
516 AATGAACTCCGCATACCTAAGCCAACCGACGAACAATGAGCGGACGGGCGGGCAGGCACTACACC
* * * *
19816673 GGCCAGAGAGGCGGGATGCGCAAGCTGTGGATCGATAGAGTGGTAGGTTGGTTTAGGCACATCTT
581 GACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTT
* *
19816738 CATATTTCTACGTTCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTT
646 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTT
** * * * **
19816802 CACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTGTGG
711 CACGTGAAGTTTAATGGCAAGACGACTCG-TTTCTATTTTTCATGA-TTTTCAAAATTTTTACGG
** * ** * *
19816867 TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGGTCGAAACTTGGTAGACATGGTCCTTG
774 TTCCAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTG
* *
19816932 TATTTTTTTTGGCTTGCACAAAAAAATTCAGCTAAAAACGT-GAAGTGTACAAGATTTT
839 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCGAACTGTACAAGATTTT
*
19816990 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAA
1 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * *
19817055 AATCTCAAATGCTTTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATATGGGGCCAATAT
66 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
19817120 AAGGTCCAAGTACCAGCACTCATCGCACATCATGTGCGCACACCCCGCCCGCCCCCCGATCGTCA
131 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCCGATCGTCA
* * * * * *
19817185 GAACCCCAATTCCATCAGTCAGGTTCCCCGGTGATGCTCCAGCGATGGTGCCTCGACGAAGAAAA
195 GAA-CCCAATGCCGTCGGTCAGGTTCCCCGGTGATGCTCCGGCGATGGTTCCCCGACGAAGAAAA
* * * *
19817250 AT-ACGGCACCAGCATATGCCCGGGCCCAGCATGTGCTTCCGTAACCCTCGGTCCGGTCTGATCT
259 ATGA-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGATCTGATCT
* * *
19817314 TAGACTGCGAATGAACTCCGTATGCTTAGATTGGGAATGAACAT-CGTATGCCTAAGTCAACCCA
323 TAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAAC-TCCGTATGCCTAAGTCAACCCA
* * * *
19817378 TGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGTGGGAT
387 CGAAACGAGCGTACGGGCGCTCAGCC-GCGAGAGGGGTGGGAT
19817421 GTGCAGTCCC
Statistics
Matches: 1168, Mismatches: 145, Indels: 34
0.87 0.11 0.03
Matches are distributed among these distances:
896 66 0.06
897 117 0.10
898 496 0.42
899 13 0.01
900 251 0.21
901 222 0.19
902 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (896 bp):
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCAG
AACCCAATGCCGTCGGTCAGGTTCCCCGGTGATGCTCCGGCGATGGTTCCCCGACGAAGAAAAAT
GAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGATCTGATCTTAG
ACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGCGTACGGGCGCTCAGCCGCGAGAGGGGTGGGATACGCAAGCCCGAGATCGGCCGAGTCCC
CCTCTACGTGCAACCAATCCTACTGCGGCAACCCTCGGTCCGGTATGATCTTAGACTGGGAATGA
ACTCCGCATACCTAAGCCAACCGACGAACAATGAGCGGACGGGCGGGCAGGCACTACACCGACCA
GAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGT
GAAGTTTAATGGCAAGACGACTCGTTTCTATTTTTCATGATTTTCAAAATTTTTACGGTTCCAGA
TTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
TTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTT
Found at i:19817341 original size:26 final size:26
Alignment explanation
Indices: 19817312--19817364 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19817302 CCGGTCTGAT
19817312 CTTAGACTGCGAATGAAC-TCCGTATG
1 CTTAGACTGCGAATGAACAT-CGTATG
* *
19817338 CTTAGATTGGGAATGAACATCGTATG
1 CTTAGACTGCGAATGAACATCGTATG
19817364 C
1 C
19817365 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACATCGTATG
Found at i:19818614 original size:26 final size:26
Alignment explanation
Indices: 19818585--19818637 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19818575 CCAGTCCGAT
19818585 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
19818611 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
19818637 C
1 C
19818638 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:19819527 original size:26 final size:26
Alignment explanation
Indices: 19819498--19819549 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
19819488 CCGGTCCGAT
19819498 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19819524 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19819550 GCTAAGTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19820596 original size:897 final size:897
Alignment explanation
Indices: 19818344--19822410 Score: 5420
Period size: 897 Copynumber: 4.5 Consensus size: 897
19818334 CAAACACCTT
*
19818344 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCC
1 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
19818409 AAGTACCAGCACCCATGGCACATCATGTGCG-A-A--------CACCCCCAATCG-CTGGAACCC
66 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GGAACCC
* * * ** * * **
19818463 CAATGCCGTCGGTCAGGTTCTCCGATGATGCACCGACGATGGTGCCCCGGGCGAAAAAAAATATG
130 CAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTAACGATGGTGCCCC-GACGAAGAAAAATGCG
* *
19818528 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACT
194 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
* * *
19818593 GGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCCACAAAACG
259 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * *
19818658 AGCGTGCGAGCGCTCAGCCAGCCAGAGGGGCGGAATGCATAAGCCGAGGATCGATCGGGTCTCCC
324 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGAGGATCGATCGGGTCCCCC
** * *
19818723 TCTACGTGCTACCGATCCTACTGCCGTAACCCTCAATTCGATTCGATCCGATCTTAGAGTGAGAA
389 TCTACGTGCTACCGATCCTACTGCCACAACCCTCAA-TC---T-GATCTGATCTTAGACTGAGAA
* * * *
19818788 TGAACTTCGTATGCCTAAGCCAACCGACCAAACGAGCGGGCAAGCTAGGCAGGCAGGTAGGCACT
449 TGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A---GG--AGC-GGGCGGGC--G--GGCACT
* *
19818853 ACGCCGGCCAGAGCGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
503 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * *
19818918 ATCTTCATATTTTTGCATGCCAATGTCATTTTTATGGCTTGTAAATTCATACATTGGTCCCTTAA
568 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
19818983 GCCTTCATGTTAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
633 GCCTTCACGTGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * *
19819048 TGCGGTTCGGGATGTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC-CTAAACTTGCTAGACATGA
698 TACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCTC-AAACTTGGTAGACATGA
* * *
19819112 TCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTCAGCTGAAAACTCGAAGTGTACAAGATTTTG
762 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTG
* * * *
19819177 TGACCATTTGAAAAAAGTGTGCCCATTTTAGACACTTTAATGGCTACTGGCTGCAAACCTGTAAA
827 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTCTAAA
19819242 ATCTCA
892 ATCTCA
* *
19819248 AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGAC
1 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * **
19819313 AAGTACCAGCACCCATCACACATCACGTACGCACACCCCCCCGG-CCCCTCGATCACCGGAACCC
66 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCC
* *** * * * *
19819377 CAATGCCGCCGGTCAGGCTCTCCGGTGATGCTCTGGTGATGGTGCCCTGGCGAAGAGAAATGTGG
130 CAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTAACGATGGTGCCCCGACGAAGAAAAATGCGG
* *
19819442 CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCGGTCCGATCTTAGACTG
195 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * *
19819507 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCATGAAATGA
260 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * *
19819572 GCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGAGGATCGATCGGGTCTCTCT
325 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGAGGATCGATCGGGTCCCCCT
* * *
19819637 CTACGTGCTACCGATCCTTCTGCCACAACCCTCAGT-TCGATAC-GATCTTATACT-ACGAATGA
390 CTACGTGCTACCGATCCTACTGCCACAACCCTCAATCT-GAT-CTGATCTTAGACTGA-GAATGA
*
19819699 ACTCCGTATGCCTAAGCCAACCGACGAAA-A-GAGCTGGCGGGCGGGCACTACGCCGGCCAGAGA
452 ACTCCGTATGCCTAAGCCAACCGACGAAACAGGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
* * *
19819762 GACGGGATGCGCAAGCCATGGATCGATAGGCTGGTATGTGGGTTTAGGCACATCTTCATATTTCT
517 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * *
19819827 GCATGCCAATGCCAATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACGTAAAG
582 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
*
19819892 TTTC-TTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGA-GGTTCGGGA
647 TTTCATT-GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGGTTCGGGA
* * **
19819955 TTTTTTAAAATTTTTTGGGAAGGAGTTTTGGCCTCACACTTGGTAGATGTGATCCTTGTATTTTT
710 TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCTCAAACTTGGTAGACATGATCCTTGTATTTTT
*
19820020 -TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
775 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAA
* * * * *
19820084 AAAGTGTCCCCATTTCAGATATTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCG
840 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATCTCA
** * * * *
19820142 AATTTTCTTTGAGGGGGTGTGAATTCTTGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
1 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
19820207 AAGTTACCAGCACCCATCGTACATCATGTGCGTACACCTCCCCTGGCCCCCCCGATCGTCGAAAC
66 AAG-TACCAGCACCCATCGCACATCATGTGCGCACACC-CCCC-GGCCCCCCCGATCGTCGGAAC
* * * *
19820272 CCCAATTCCGCCGGTCAAGTTCTTCGGTGATGCTCTAACGATGGTGCCCCGATGAAGAAAAATGC
128 CCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTAACGATGGTGCCCCGACGAAGAAAAATGC
* * * * *
19820337 GGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCGGCAACCCTCAGTCCGATCCGATCTTAGAT
193 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
* * * *
19820402 TGGGAATGAACTACGTATGCTTAGACCGGGAATGAACTTCGTATGCCTAAGTCAACCCACGGAAC
258 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * ** *
19820467 GAACGTGCGGGCGCTCAGCCGACTAGAGGGGCGGGATGTGCAAGCTGGGGATCGATCGGGTCCCC
323 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGAGGATCGATCGGGTCCCC
* ** * ** *
19820532 CTCTGCGTGCTATTGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAA
388 CTCTACGTGCTACCGATCCTACTGCCACAACCCTCAATCTGATCTGATCTTAGACTGAGAATGAA
*
19820597 CTCCGTATGCCTAAGCCAACCGATGAAAC--GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAG
453 CTCCGTATGCCTAAGCCAACCGACGAAACAGGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAG
* *
19820660 ACGAGATGCGCAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
518 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
**
19820725 TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCCTTCACGTGAAGT
583 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * *
19820789 TTCATTGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTT
648 TTCATTGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTT
* * * *
19820854 TTTAAAATTTTTTCAGAAGGAGTTTTGGCCTGAACCTTGGTAGACATGATCCTTGTATTTTTTTT
713 TTTAAAATTTTTTCGGAAGGAGTTTTGGCCTCAAACTTGGTAGACATGATCCTTGTATTTTTGTT
* *
19820919 GGCATGCACAAAAACATTCAGCTAAATACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAA
778 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTG-AAAAA
19820984 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATCTCA
842 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATCTCA
* *
19821040 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGTGGGCCAATATAACGGCC
1 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * *
19821105 AAGTACTAGCACCCATCGCACATCATGTGCGCACA-CCCCCAGCCCCCCTGATCGTCGGAACCCT
66 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCC
* * * ** * * *
19821169 AATGCCGCTGGTCAGGTTCTCCGGCGATACT-TCAGTGATGGTGCCCTGACGAGGAAAAATACGG
131 AATGCCGCCGGTCAGGTTCTCCGGTGATGCTCT-AACGATGGTGCCCCGACGAAGAAAAATGCGG
* *
19821233 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTG
195 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * * *
19821298 TGAATGAACTCCATATTG-TTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACG
260 GGAATGAACTCCGTA-TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * ** * ** *
19821362 AGCATTCGGAG-GCTCAACCGGCCAGAGGGTCGGGATGTGCAAGCTAAGGATCGGCCGGGTCACC
324 AGCGTGCGG-GCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGAGGATCGATCGGGTCCCC
* * * ** * * * * *
19821426 CTCTATGTGCTACTGATCCTGCTATCGCAACCCTCGATCTGGTCTAATCTTAGACTGGGAATGAA
388 CTCTACGTGCTACCGATCCTACTGCCACAACCCTCAATCTGATCTGATCTTAGACTGAGAATGAA
* * * *
19821491 CTCTGTATGCCTAAGCCAACCAACGAAACGAGTGGGCGGGCGGGCGGGCGGGCACTACGCTGGCC
453 CTCCGTATGCCTAAGCCAACCGACGAAAC-A----G-GAGCGGGCGGGCGGGCACTACGCCGGCC
* * * * * *
19821556 AAAGAGACGGGGTGCACAAGCCGTGGATCGATAGAGTGGTAGGTGGGTCTATGCACATCTTCATA
512 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* *
19821621 TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACG
577 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
*
19821686 TGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTG
642 TGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG
* * *
19821751 GGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
707 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCTCAAACTTGGTAGACATGATCCTTGTATT
*
19821816 TTTGTTGGCATGCACAAAAAGATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTG
772 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTG
*
19821881 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTCTAAAATCTCA
837 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATCTCA
*
19821942 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCC
1 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * * *
19822007 AAGTACCAGCACACATCGCACATCGTGTGCGCATACCCCCCCGGCCCTCCCGATCGTCAGAACCT
66 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCC
* * * * * *
19822072 CAATTCCACCGGTCAGGTTCCCCGATGATGCTCCAACGATGGTGCCCCGATGAAGAAAAATGCGG
130 CAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTAACGATGGTGCCCCGACGAAGAAAAATGCGG
* * *
19822137 CACCAGCATATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGATTG
195 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * * * *
19822202 TGAATGAACTCTGTATGCTGAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGA
260 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * *
19822267 ACGTGCAGGCGCTCAGCCGGCTAGAGGGGTGGGATGCACAAGC-CAGGGATCGGTCGGGTCCCCC
325 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGA-GGATCGATCGGGTCCCCC
* * * ** * * *
19822331 TCTGCTTGCTACCGATCCTACTACCTTAACCCCCAATCTGATCTGATCTTAGACTGGGAATAAAC
389 TCTACGTGCTACCGATCCTACTGCCACAACCCTCAATCTGATCTGATCTTAGACTGAGAATGAAC
*
19822396 TCCATATGCCTAAGC
454 TCCGTATGCCTAAGC
19822411 TAACTGAAGT
Statistics
Matches: 2794, Mismatches: 322, Indels: 94
0.87 0.10 0.03
Matches are distributed among these distances:
893 1 0.00
894 491 0.18
895 289 0.10
896 137 0.05
897 541 0.19
898 118 0.04
899 6 0.00
900 3 0.00
902 285 0.10
903 202 0.07
904 388 0.14
905 1 0.00
906 2 0.00
907 1 0.00
908 47 0.02
909 1 0.00
912 1 0.00
913 225 0.08
914 54 0.02
915 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCC
AATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTAACGATGGTGCCCCGACGAAGAAAAATGCGGC
ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGAGGATCGATCGGGTCCCCCTC
TACGTGCTACCGATCCTACTGCCACAACCCTCAATCTGATCTGATCTTAGACTGAGAATGAACTC
CGTATGCCTAAGCCAACCGACGAAACAGGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
ATTGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
AAAATTTTTTCGGAAGGAGTTTTGGCCTCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC
ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTG
TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATCTCA
Found at i:19821328 original size:26 final size:26
Alignment explanation
Indices: 19821290--19821339 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
19821280 TGGTCCGATC
19821290 TTAGACTGTGAATGAACTCCATATTG
1 TTAGACTGTGAATGAACTCCATATTG
19821316 TTAGACTAG-GAATGAACTCCATAT
1 TTAGACT-GTGAATGAACTCCATAT
19821340 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (26 bp):
TTAGACTGTGAATGAACTCCATATTG
Found at i:19822951 original size:26 final size:26
Alignment explanation
Indices: 19822922--19822974 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19822912 CCGATCCTAT
19822922 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19822948 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19822974 C
1 C
19822975 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19823379 original size:736 final size:730
Alignment explanation
Indices: 19821530--19823731 Score: 2832
Period size: 729 Copynumber: 3.0 Consensus size: 730
19821520 GAGTGGGCGG
* * *
19821530 GCGGGCGGGCGGGCACTACGCTGGCCAAAGAGACGGGGTGCACAAGCCGTGGATCGATAGAGTGG
1 GCGGGCGGGCGGGCACTA-GC-GGCCAGAGAGACGGGATGCACAAGCCATGGATCGATAG-GTGG
* * *
19821595 TAGGTGGGTCTATGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
63 TAGGTGGGTTTA-GCACATCTTCATATTTCTGAGTGCCAATGCCACTTTTATGGCTTGTAAATTC
*
19821660 ATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCA
127 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA-TGCAAGACGACTCGTTTTCTATTTTTCA
*
19821725 CGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCA
191 CGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCA
*
19821790 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAGATTCAGCTAAAAACTCGA
256 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
19821855 AGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
321 AGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
19821920 GCAGAAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
386 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
19821985 ATAAGGGGCCAATATAAGGGCCAAGTACCAG-CACACATCGCACATCGTGTGCGCATACCCCCCC
451 A-AAGGGGCCAATATAAGGGCCAAGTACCAGAAAC-CATCGCACATCATGTGCGCACACCCCCCC
* * * * * ***
19822049 GGCCCTCCCGATCGTCAGAACCTCAATTCCACCGGTCAGGTTCCCCGATGATGCTCCAACGATGG
514 GGCCC-CCCGATCGTCAGAACCCCAATACCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATGG
*
19822114 TGCCCCGATGAAGAAAAATGCGGCACCAGCATATGCCCGAGCCCAGCATGTGCTGCCGTAACCCT
578 TGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCT
* * * *
19822179 CGGTCCGGTCCGATCTTAGATTGTGAATGAACTCTGTATGCTGAGACTGGGAATGAACTTCGTAT
643 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTAT
*
19822244 GCCTAAGTCAACCCATGAAACGA
708 GCCTAAGTCAACCCATAAAACGA
* * * * * * ** * * *
19822267 ACGTGCAGGC--GCTC-AGCCGGCTAGAGGGGTGGGATGCACAAGCCAGGGATCGGT-CG-GGTC
1 GCGGGCGGGCGGGCACTAG-CGGCCAGAGAGACGGGATGCACAAGCCATGGATCGATAGGTGGT-
*** ** * * ** * *** * *
19822327 CCCCTCTGCTT-GCTACCGATCCT-ACTACCT-TAACCCCCAAT-CTGATCTGATCTTA-GAC-T
64 -AGGTGGGTTTAGC-A-C-ATCTTCA-TATTTCTGAGTGCCAATGC-CA-CT--T-TTATGGCTT
** ** * * *
19822386 GGGAATAAACTCCATAT-G--CC-TAAG-C-TAAC-TGAAGTTTCATGGCAGGACGACTCGTTTT
119 GTAAATTCA-TACA-ATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT-GCAAGACGACTCGTTTT
* * * *
19822444 CTATTTTTCACGAATTTTGAAACTTTTTGTGGTTTAGGATTTTTTAAAATTTTTTCGGAATGAGT
181 CTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAAGAGT
* ** * * *
19822509 TTTGGGCCCAAACTTATTGGTCGTGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCA-CT
246 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * *
19822573 AAAAACTTGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
311 AAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
19822638 ATGGCTACTGGCAGCAAACCTATAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGC
376 ATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
19822703 TTGATGAGGGACAGGGGCCCAATATAAGTGCCAAGTACCAGAAACCATCGCACATCATGTGCGCA
441 TTGATGAGGGAAAGGGG-CCAATATAAGGGCCAAGTACCAGAAACCATCGCACATCATGTGCGCA
* * * *
19822768 CACTCCCCCCTGGCCCCCCGATTGTCAGAACCCCAATGCCGTCGGTTAGGTTCTCCGACGATGCT
505 CAC-CCCCCC-GGCCCCCCGATCGTCAGAACCCCAATACCGCCGGTCAGGTTCTCCGACGATGCT
* ** *
19822833 CTGGCGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCACGAGCCCAGCATGTGCTG
568 CTGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* *
19822898 CCGTAACCCTCGGTCCGATCCTATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
633 CCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* *
19822963 AACTTCGTATGCCTAAGCCAACCGATAAAACGA
698 AACTTCGTATGCCTAAGTCAACCCATAAAACGA
* *
19822996 GCGGGCGGGCGGGCACTATGTCGGCCGGAGAGACGGGATGCGCAAGCCATGGATCGATATGGTGG
1 GCGGGCGGGCGGGCACTA-G-CGGCCAGAGAGACGGGATGCACAAGCCATGGATCGATA-GGTGG
*
19823061 TAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCACTTTTATGGCTTGTAAATTC
63 TAGGTGGGTTTA-GCACATCTTCATATTTCTGAGTGCCAATGCCACTTTTATGGCTTGTAAATTC
19823126 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCAAGACGACTCGTTTTCTATTTTTCAC
127 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCAAGACGACTCGTTTTCTATTTTTCAC
* *
19823191 GATTTTTGAAACTTTTTGGGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
192 GATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAA
* **
19823256 ACTTGGTAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAACCATTCAGCTAAAAACTCGAA
257 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
19823321 GTGTAAAAGA-TTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
322 GTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
19823385 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
387 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * *
19823450 TAGGGGGCCAATATAAGGGCCAAGTACCA-ACACCCATCGCACATCATGTGCGCACA-CCCCACA
452 -AAGGGGCCAATATAAGGGCCAAGTACCAGA-AACCATCGCACATCATGTGCGCACACCCCCCCG
* * * *
19823513 GCACCCCTGATCGTCGGAACCCCAATACCGCCGATCAGGTTCTTCGACGATGCTCTGGCGATGGT
515 GC-CCCCCGATCGTCAGAACCCCAATACCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGT
* * * * *
19823578 GCCCCGATGAGGAAAAATAC-GAACCAGCACATGCCCGAGCCCAGCATGTGCTGCGGTAGCCCTC
579 GCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTC
** * * * *
19823642 GGTTTGGTCCGATCTTAAAGTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATG
644 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATG
* **
19823707 CCAAAGTCAACCCACGAAACGA
709 CCTAAGTCAACCCATAAAACGA
19823729 GCG
1 GCG
19823732 TGCAGGCGCT
Statistics
Matches: 1237, Mismatches: 184, Indels: 92
0.82 0.12 0.06
Matches are distributed among these distances:
727 5 0.00
728 179 0.14
729 343 0.28
730 18 0.01
731 14 0.01
732 23 0.02
733 197 0.16
734 99 0.08
735 15 0.01
736 302 0.24
737 42 0.03
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (730 bp):
GCGGGCGGGCGGGCACTAGCGGCCAGAGAGACGGGATGCACAAGCCATGGATCGATAGGTGGTAG
GTGGGTTTAGCACATCTTCATATTTCTGAGTGCCAATGCCACTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCAAGACGACTCGTTTTCTATTTTTCACGATT
TTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
AAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAAAGG
GGCCAATATAAGGGCCAAGTACCAGAAACCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
CGATCGTCAGAACCCCAATACCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGA
TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGG
TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGT
CAACCCATAAAACGA
Found at i:19824614 original size:26 final size:26
Alignment explanation
Indices: 19824563--19824615 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19824553 CCAGTCCGAT
* *
19824563 CTTAGATTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACATATG
*
19824589 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTACATATG
19824615 C
1 C
19824616 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:19825113 original size:896 final size:892
Alignment explanation
Indices: 19822948--19825118 Score: 3175
Period size: 896 Copynumber: 2.4 Consensus size: 892
19822938 ACTCCGTATG
* ** * *
19822948 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATAAAACGAGCGGGCGGGCGGGCACT
1 CTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGAGCACT
* * * * *
19823013 ATGTCGGCCGGAGAGACGGGATGCGCAAGCCATGGATCGATATGGTGGTAGGTGGGTTTAGGCAC
66 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
19823078 ATCTTCATATTTCTGTGTGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
131 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
19823143 GCCTTCACGTGAAGTTTCA-TGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
196 GCCTTCACGTGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
** * *
19823207 TGGGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTCAT
261 TACGG-TTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
19823272 CCTTGTATTTTTGTTGGCATGCACAAAACCATTCAGCTAAAAACTCGAAGTGTAAAAGATTTGTC
325 CCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTAAAAGATTTGTC
*
19823337 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
390 ACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
19823402 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
455 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
*
19823467 GGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCACAGCACCCCTGATCGTCGGAA
520 GGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCACAGCACCCCTGATCGTCGAAA
* *
19823532 CCCCAATACCGCCGATCAGGTTCTTCGACGATGCTCTGGCGATGGTGCCCCGATGAGGAAAAATA
585 CCCCAATACCGCCGATCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCCCGACGAGGAAAAATA
* * * ***
19823597 CGAACCAGCACATGCCCGAGCCCAGCATGTGCTGCGGTAGCCCTCGGTTTGGTCCGATCTTAAAG
650 CGAACCAGCACATGCCCGAGCCCAGCATGTGCTGCGGCAACCCTCGATCCAGTCCGATCTTAAAG
* *
19823662 TGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAAC
715 TGGGAATGAACTACATATGCTTAGACTGGGAATGAACTCCATATGCCAAAGTCAACCCACGAAAC
*
19823727 GAGCGTGCAGGCGCTCAGCCGACCAGAGGGTCAGGATGCACAAGCCAGGGATCGGCCAGGTCACC
780 GAGCGTGCAGGCGCTCAGCCGACCAGAGGGTCAGGATGCACAAGCCAGGGATCGACCAGGTCACC
* * * * * * *
19823792 CTCTGCGTGCTGCTGATTCTGCTGCCACAACCCTTGATCTGGTCTGAT
845 CTCTGCGTGCTACCGATCCTACCGCCACAACCCTAGATCTGGGCTGAT
* *
19823840 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAACGAGCGGACGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGACGAAACGA----A--------CGGG
** * * * *
19823905 CGGGCGAGCACTACGCTAGCCAGAAAGACGGGATGCGTAAGCCGTGGATAGATAGAGTGGTAGGT
54 CGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * *
19823970 GGGTCTATGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCTTACA
119 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
19824035 ATGGTCCCTTAAGCCTGCACGTGAAGTTTCATTGCAAGATGACTCGTTTTCTATTTTTCATGATT
184 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACGATT
* *
19824100 TTTGAAACTTTTTACGGCTTGGGATTTTTTAAAATTTTTTTCGAAAGAGTTTTGGCCCCAAACTT
249 TTTGAAACTTTTTACGG-TTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTT
*
19824165 GGTAGACGTGATACTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGT
313 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGT
*
19824230 AAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGC
378 AAAAGA-TTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGC
*
19824295 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
442 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
19824360 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCACCC
507 GGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCACAGCACCC
* * * * *
19824425 CTGATCGTCGAAACCCTAATGCCGTCGGTCAGGTTC-TCTGGCGATGCTCCGGCGATGGTGCCCC
572 CTGATCGTCGAAACCCCAATACCGCCGATCAGGTTCTTC-GACGATGCTCCGGCGATGGTGCCCC
* *
19824489 GACGAGGAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCGGCAACCCTCGATC
636 GACGAGG-AAAAATAC-GAACCAGCACATGCCCGAGCCCAGCATGTGCTGCGGCAACCCTCGATC
* * * * *
19824554 CAGTCCGATCTTAGATTGGGAATGAACTACGTATGCTTAGACTGGGAATGAACTTCATATGCCTA
699 CAGTCCGATCTTAAAGTGGGAATGAACTACATATGCTTAGACTGGGAATGAACTCCATATGCCAA
* * * * ** **
19824619 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAATGG-C-GGAATGTGCAAGCTG
764 AGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAG-AGGGTCAGG-ATGCACAAGCCA
* * *
19824682 GGGATCGATCGGGTC-CTCCTCTGTGTGCTACCGATCCTACCGCCACAACCCTCAG-TCTGGGCT
827 GGGATCGACCAGGTCAC-CCTCTGCGTGCTACCGATCCTACCGCCACAACCCT-AGATCTGGGCT
19824745 GAT
890 GAT
* *
19824748 CTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGACGAAATGAACGGGCGGACGAGCACT
1 CTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGAGCACT
* *
19824813 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGCGGATCGATAGGGTGGTAGGTGGATTTAGGCAC
66 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * **
19824878 ATCTTCATATTTCTGCATGCCAATGCCATTTTTGTATCTTGTAAATTCATACAATGGTCCCTTAA
131 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * **
19824943 GTCTTCACGTGAAGTTTCATTGCAAGACGACTCGTTTTTTATTTTTCACAATTTTCAAAACTTTT
196 GCCTTCACGTGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
** * *
19825008 TACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCTAAACTTGGTAGATGTGAT
261 TACGGTT-GGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
19825073 CCTTGTATTTTTGTTGGCATGCACAAAAAAATACAGCTAAAAACTC
325 CCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTC
19825119 GAGGGATAGG
Statistics
Matches: 1136, Mismatches: 121, Indels: 40
0.88 0.09 0.03
Matches are distributed among these distances:
892 43 0.04
895 2 0.00
896 285 0.25
904 147 0.13
905 159 0.14
906 243 0.21
907 10 0.01
908 243 0.21
909 4 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.27
Consensus pattern (892 bp):
CTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGAGCACT
ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
TACGGTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTAAAAGATTTGTCA
CCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
GCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCACAGCACCCCTGATCGTCGAAAC
CCCAATACCGCCGATCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCCCGACGAGGAAAAATAC
GAACCAGCACATGCCCGAGCCCAGCATGTGCTGCGGCAACCCTCGATCCAGTCCGATCTTAAAGT
GGGAATGAACTACATATGCTTAGACTGGGAATGAACTCCATATGCCAAAGTCAACCCACGAAACG
AGCGTGCAGGCGCTCAGCCGACCAGAGGGTCAGGATGCACAAGCCAGGGATCGACCAGGTCACCC
TCTGCGTGCTACCGATCCTACCGCCACAACCCTAGATCTGGGCTGAT
Found at i:19825364 original size:26 final size:26
Alignment explanation
Indices: 19825324--19825376 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19825314 TCGGTCCGAT
*
19825324 CTTAGAATGGCAATGAACTCTGTATG
1 CTTAGAATGGCAATGAACTCCGTATG
* *
19825350 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGCAATGAACTCCGTATG
19825376 C
1 C
19825377 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGCAATGAACTCCGTATG
Found at i:19825830 original size:769 final size:765
Alignment explanation
Indices: 19824350--19825889 Score: 2167
Period size: 769 Copynumber: 2.0 Consensus size: 765
19824340 GAGGTTTGAT
19824350 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
1 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---
** * * * * * *
19824415 CCCAGCACCCCTGATCGTCGAAACCCTAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGCGA
63 CCCA-CACCCCTGATCACCGAAACCCCAATGCCATCAGTCAGGTTCTCCGACGATGCTCCGACGA
* * * * *
19824480 TGGTGCCCCGACGAGGAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCGGCAA
127 TCGTGCCCCAACGAAGAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA
* * *
19824545 CCCTCGATCCAGTCCGATCTTAGATTGGGAATGAACTACGTATGCTTAGACTGGGAATGAACTTC
192 CCCTCGATCCAGTCCGATCTTAGAATGGCAATGAACTACGTATGCTTAGACTGGGAATGAACTCC
* * * * * **
19824610 ATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAATGGCGGAATGTG
257 ATATGCCTAAGTCAACCCACGAAACGAGAGTGCGGGCGCTCAGCCAGACAGAAGGGCGGAATGCA
* * * *
19824675 CAAGCTGGGGATCGATCGGGTCCTCCTCTGTGTGCTACCGATCCTACCGCCACAACCCTCAGTCT
322 CAAGCCGGGGATCGACCGGGTCCTCCTCTGCGTGCTACCGATCCTACCGCCACAACCCTCAGTCC
* * *
19824740 GGGCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGACGAAATGAACGGGCGGA
387 GGGCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGA
* *
19824805 CGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGCGGATCGATAGGGTGGTAGGTGGAT
452 CGAGCACTACGCCGGCCAGAGAGACGGAATGCGCAAGCCACGGATCGATAGGGTGGTAGGTGGAT
* * * * *
19824870 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTGTATCTTGTAAATTCATACAATGG
517 TTAGGCAAATCTTCATATTTCTACATGCCAATGCCATTTTTATAGCTCGTAAATTCATACAATGG
* * *
19824935 TCCCTTAAGTCTTCACGTGAAGTTTCATTGCAAGACGACTCGTTTTTTATTTTTCACAATTTTCA
582 TCCCGTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCA
* *
19825000 AAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCTAAACTTGGTA
647 AAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
*
19825065 GATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATACAGCTAAAAACTC
712 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATACAGCTAAAAACTC
*
19825119 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACA-CC
1 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
** * *
19825183 -TTCCCC-GATCACCGAAACCCCAATGTCATCAGTCATGTTCTCCGACGATGCTCCGACGATCGT
66 ACACCCCTGATCACCGAAACCCCAATGCCATCAGTCAGGTTCTCCGACGATGCTCCGACGATCGT
* * *
19825246 GCCCCAATGAAG-AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCT
131 GCCCCAACGAAGAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCT
* * *
19825310 CGATTCGGTCCGATCTTAGAATGGCAATGAACT-CTGTATGCTTAGACTGGGAATGAACTCCGTA
196 CGATCCAGTCCGATCTTAGAATGGCAATGAACTAC-GTATGCTTAGACTGGGAATGAACTCCATA
* * * *
19825374 TGCCTAAGTCAACCCACGAAATGAGAGTGCTGGCGCTCAGCCAGACAGAGGGGCGGGATGCACAA
260 TGCCTAAGTCAACCCACGAAACGAGAGTGCGGGCGCTCAGCCAGACAGAAGGGCGGAATGCACAA
* ** * * **
19825439 GCCGGGGATCGACCGGGTCCTCCTTTGCGTGCTGTCGATCCTGCTGCCGTAACCCTC-GATCCGG
325 GCCGGGGATCGACCGGGTCCTCCTCTGCGTGCTACCGATCCTACCGCCACAACCCTCAG-TCCGG
* * *
19825503 TCTGATCTTAGACTAGGAATGAACTCTGTATGCGTAAGCCAATCGACGAAACGAACGGGTGGGCA
389 GCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAAC-----GG--
* * * *
19825568 AGCGGGCGGGCACTACGTCGGCCAGAGAGACGGAATGCGCAAGCCATGGATCGATAGGGTGGTAG
447 -GCGGACGAGCACTACGCCGGCCAGAGAGACGGAATGCGCAAGCCACGGATCGATAGGGTGGTAG
* ** * *
19825633 GTGGGTTTAGGCAAATCTTCATATTTCTATGTGGCAATGCCATTTTTATGGCTCGTAAATTCATA
511 GTGGATTTAGGCAAATCTTCATATTTCTACATGCCAATGCCATTTTTATAGCTCGTAAATTCATA
* *
19825698 CAATGGTCCCGTAAGCCTTCACGTGAAGTTTCA-TGACAAGACGATTCGTTTTCTATTTTTCATA
576 CAATGGTCCCGTAAGCCTTCACGTGAAGTTTCATTG-CAAGACGACTCGTTTTCTATTTTTCACA
*
19825762 ATTTTCAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
640 ATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
*
19825827 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATACAGCTAAAAACTC
705 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATACAGCTAAAAACTC
19825888 GA
1 GA
19825890 AGTATACAAG
Statistics
Matches: 679, Mismatches: 81, Indels: 22
0.87 0.10 0.03
Matches are distributed among these distances:
760 2 0.00
761 259 0.38
762 55 0.08
763 4 0.01
765 2 0.00
766 2 0.00
768 2 0.00
769 353 0.52
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (765 bp):
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
ACACCCCTGATCACCGAAACCCCAATGCCATCAGTCAGGTTCTCCGACGATGCTCCGACGATCGT
GCCCCAACGAAGAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCT
CGATCCAGTCCGATCTTAGAATGGCAATGAACTACGTATGCTTAGACTGGGAATGAACTCCATAT
GCCTAAGTCAACCCACGAAACGAGAGTGCGGGCGCTCAGCCAGACAGAAGGGCGGAATGCACAAG
CCGGGGATCGACCGGGTCCTCCTCTGCGTGCTACCGATCCTACCGCCACAACCCTCAGTCCGGGC
TGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGACGAG
CACTACGCCGGCCAGAGAGACGGAATGCGCAAGCCACGGATCGATAGGGTGGTAGGTGGATTTAG
GCAAATCTTCATATTTCTACATGCCAATGCCATTTTTATAGCTCGTAAATTCATACAATGGTCCC
GTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAAC
TTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATACAGCTAAAAACTC
Found at i:19826247 original size:26 final size:26
Alignment explanation
Indices: 19826218--19826267 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19826208 CTGGTCCGAT
*
19826218 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACCCCGTAAG
*
19826244 CTTAGATTGGGAATGAACCCCGTA
1 CTTAGACTGGGAATGAACCCCGTA
19826268 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTAAG
Found at i:19827135 original size:26 final size:26
Alignment explanation
Indices: 19827106--19827158 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19827096 CTGGTCCGAT
19827106 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19827132 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19827158 C
1 C
19827159 CTAACTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19827522 original size:889 final size:888
Alignment explanation
Indices: 19825119--19829926 Score: 5868
Period size: 894 Copynumber: 5.4 Consensus size: 888
19825109 CTAAAAACTC
*
19825119 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCT
1 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-
* * * * *
19825184 TCCCCGATCACCGAAACCCCAATGTCATCAGTCATG-TTCTCCGACGATGCTCCGACGATCGTGC
65 -CCCC--T--CCGGAACCCCAATGCCACCGGTCA-GATTCTCCGACGATGCTCCGACGATGGTGC
* * * * * *
19825248 CCCAATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGA
124 CCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * *
19825313 T-TCGGTCCGATCTTAGAATGGCAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGC
189 TCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
19825377 CTAAGTCAACCCACGAAATGAGA-GTGCTGGCGCTCAGCCAGACAGAGGGGCGGGATGCACAAGC
253 CTAAGTCAACCCACGAAACGA-ACGTGCGGGCGCTCAGCCTGCCAGAGGGGCGGGATGCGCAAGC
* * **
19825441 CGGGGATCGACCGGGTCCTCCTT-TGCGTGCTGTCGATCCTGCTGCCGTAACCCTC-GATCCGGT
317 CGGGGATCGATCGGGTCC-CCTTCAGCGTGCTGTCGATCCTGCTGCCACAACCCTCAG-TCCGGT
* * * * * **
19825504 CTGATCTTAGACTAGGAATGAACTCTGTATGCGTAAGCCAATCGACGAAACGAACGGGTGGGCAA
380 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAC-GGCGGGCGG
* * *
19825569 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGAATGCGCAAGCCATGGATCGATAGGGTGGTAGG
444 GCGGGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * *
19825634 TGGGTTTAGGCAAATCTTCATATTTCTATGTGGCAATGCCATTTTTATGGCTCGTAAATTCATAC
508 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
19825699 AATGGTCCCGTAAGCCTTCACGTGAAGTTTCATGACAAGACGATTCGTTTTCTATTTTTCATAAT
573 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* *
19825764 TTTCAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
638 TTTCGAAACTTTTTGCGGTTCCAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
19825829 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATACAGCTAAAAACTCGAAGTA
703 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
19825894 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
768 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
19825959 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
833 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
* * *
19826015 GAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCACACATCACGTGCGCACACCC
1 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC
* * **
19826080 CCCGATCTCCGGAACCCCAATGCCACTGGTCA-AGTTCTTCGACGATGCTCCGGTGATGGTGCCC
65 CCC---CTCCGGAACCCCAATGCCACCGGTCAGA-TTCTCCGACGATGCTCCGACGATGGTGCCC
* * * * * *
19826144 AGGCAAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGTCACAACCCTCGGTC
126 CGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * *
19826209 TGGTCCGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGATTGGGAATGAACCCCGTATGCCTA
191 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * *
19826274 AGTCAACTCACGAAACGAGCGTGCAGGCACTCAGCCCGCCAGAGGGGCGGGATGCGTAAGCCGGG
256 AGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCTGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * *
19826339 GATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGTCC-CAACCCTCAGTCCGGT-TCGA
321 GATCGATCGGGTCCCCTTCAGCGTGCTGTCGATCCTGCTG-CCACAACCCTCAGTCCGGTCT-GA
* *
19826402 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAACGG-GTAGGCGGGAG
384 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGCG--GGCGGGCG
** *
19826466 GGCGGGCACTACGCCGGCCAGAGAGATAGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGG
447 GGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * ** *
19826531 GTTGAGGCACTTCTTCATATTTATGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAAT
511 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
** *
19826596 GGTAACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTTTTTTTCATGATTTT
576 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * *
19826661 CAAAACTTTTTGCGGTTCCAGATTTTTTAAAATTTCTTCGGAGGGAGTTTTGGCCCCAAACTTGG
641 CGAAACTTTTTGCGGTTCCAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * *
19826726 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAAATCGAACTGAAC
706 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
19826791 AAGATTTTTTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACCGGCAGCAA
771 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
19826856 ACCTATAAAATCTCAAATGCCCTTTAA-GGGGTGTGAGTTCTCGAGGCTTGAT
836 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
* ** * * *
19826908 GAGGGATAGAGGGCCAATATAATTGCCAAGTACCAGTACCCATCGCACATCATGTGCGCAGACCT
1 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * **
19826973 CCC-CCGGAACCCCAATGCCACCGGTCAGATTCTCC-AGTGATGCTCCAATGATGGTGCCCCGGT
66 CCCTCCGGAACCCCAATGCCACCGGTCAGATTCTCCGA-CGATGCTCCGACGATGGTGCCCCGAC
* * * * * *
19827036 GAAGAAAAATGTAGCACCAACACATGCCAGAGCCAAGCATGTGCTGCCGCAACCCTTGGTCTGGT
130 GAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
*
19827101 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAACTC
195 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * *
19827166 AACCCAGGAAACGAACGTGTC-GGCGCTTAG-CTGAACAAAAGGGGCGGGATGCGCAAGCCGAGG
260 AACCCACGAAACGAACGTG-CGGGCGCTCAGCCTG--CCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * ** *
19827229 ATCGATCGGATTCCGTTCAGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTTTGGTCTAATCT
322 ATCGATCGGGTCCCCTTCAGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCT
* * *
19827294 TAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGAGCGGACGGGCGGGCGGGCG
387 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGG-CGGGCGGGCGGGCG
* * * *
19827359 AGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTTGTTGGTGGGTTT
451 -GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
19827424 AGGCACATCTTCATATTTCTACGTGCCAACGTCATTTTTATGGCTTGTAAATTCATACAATGGTC
515 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * ** *
19827489 CCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAA
580 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAA
* * * *
19827554 ACCTTTTACGGTT-CAGGATTTTTTAAAATTTTTTC-GAAGGGGTTTTGGCCCCAAACATGGTAG
645 ACTTTTTGCGGTTCCA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
19827617 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTACAAACTCGAAGTGTACAAG
709 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
19827682 ATTTTCG-GACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
774 ATTTT-GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
19827746 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTCAT
838 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
*
19827797 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATAGCACATCATGTGCGCACACCG
1 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---
* ** * * * *
19827862 CCCCCGCCCCCCGATCACGGGAACCCCAATCCCGTCGGTCAGGTTCTCTGACAATGCTCC-AGTG
63 ------CCCCCC--TC-C-GGAACCCCAATGCCACCGGTCAGATTCTCCGACGATGCTCCGA-CG
* * ** * * * * * *
19827926 ATGGTGCCTCGACGAAAAAAAATGCGGCACAAGCGCATGCTCGAGCCCAGCATGCGCTGTCGTAA
117 ATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * * * *
19827991 CCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGCATGCTTAGA-TAGGGAATGAACTC
182 CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGAATGAACTC
* ** ** ** * *
19828055 CGTACGCCTTGGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCAGGCCAGAGGGGCAGGATAC
246 CGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCTGCCAGAGGGGCGGGATGC
* ** * * *
19828120 GCAA-CCAGGGGATTGGCCGGGT-CCC--C--C-T-CT-TC-A---TGCTGTCGCAACCCTCGGT
311 GCAAGCC-GGGGATCGATCGGGTCCCCTTCAGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGT
* * *
19828172 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACG-A--GCTG
375 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGCGG
* * * * *
19828234 GCGGGCGGACGGGCACTATGCCGGCCAGAGAAACGGGATGCGCATGCCATGGATCGATAGGGTGG
440 GCGGGCGGGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * *
19828299 TAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
504 TAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
19828364 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTTTTTTTCA
569 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * * *
19828429 TGATTTTGGAAACGTTTTACGGATCCAAATTTTTTAAAATTTTTTGGGAAGGAGTTTTGGCCCCA
634 TGATTTTCGAAACTTTTTGCGGTTCCAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * * *
19828494 AACTTGGTAGACGTGATCCTTGTAATTTTT-TTGGTATGC-GAAAAAAATTCAGCTAAAAATTTG
699 AACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
19828557 AAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT
763 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
19828622 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCAT
828 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
*
19828683 GAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCACATCATGTGCGCACA-CC
1 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * ** * **
19828747 CCC-CC-GACCCCCCGACCCCCCCGATCGTCAGAACCCTAATGCCGACGATCAGGTTCTCCGACG
66 CCCTCCGGA-ACCCCAATGCCACCG---GTCAG-A---TTCT-CCGACGAT---G--CTCCGACG
* *
19828810 ATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAA
117 ATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * * *
19828875 CCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACACCATATGCTTAGACTGGGAATGAACTCT
182 CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * *
19828940 GTATGCCTAAGTCCACCCACAAAACGAACGTGCGGGCGCTCAGCCTGCCAGAGGGGCGGGATGTG
247 GTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCTGCCAGAGGGGCGGGATGCG
* * *
19829005 CAAGCCGGGGACCGGTCGGGTCCCCCTCCA-CGTGCTGTCGATCCTGCTGCCACAACCCTCAGTC
312 CAAGCCGGGGATCGATCGGGT-CCCCTTCAGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTC
* * * * * **
19829069 TGATCTGATCTTAGACTGGGAATGAACTCCGTATGTCTAAGACAACTGACGAAACGAATTTGCGG
376 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAA-CGGCGG
* * * *** * * * *
19829134 GCGGCCAGGCTGGTACTACGCCGATAAGAGAGACGAGATACGCAAGCCGTGGATCGGTAGAGTGG
440 GCGGGCGGGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * *
19829199 TAGGTAGGTTTAGGCACATCCTCATATTTCTACGTGCCAATACCATTTTCATGGCTTGTAAATTC
504 TAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
19829264 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTTCA
569 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * *
19829329 CGATTCTCGAAACTTTTTGCGGTTCGAGA-TTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCA
634 TGATTTTCGAAACTTTTTGCGGTTCCAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
** * * * * ** *
19829393 AACTTTTTAGACGTGATCCTTGCATTTTTTTTCGAATGCGTAAAAAAATTCAGCTAAAAACTCCA
699 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * * * *
19829458 AGTGTACAAGATTTTGTGACCATTTGAACAAAGTGTGCCTATTTTAAACACTTTAATGGCTACTG
764 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
19829523 GCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGATGTGAGTTCTCAAGGTTTGAT
829 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
* * * *
19829583 GAGGGATAGGGGGGCAATATAGGGGCCAAGCACCAGCACCCATCGTACATCATGTGCGCACACCC
1 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---
** * *
19829648 CCCAACCCCCTCAATTGCTGGAACCCCAAT-CCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGA
63 --C--CCCCCTC-----C-GGAACCCCAATGCCACCGGTCAGATTCTCCGACGATGCTCCGACGA
* * * * *
19829712 TGGTGCCCCGACGAAGAAAAATATGACACCAGTACATGCTCGAGCCAAGCATGTGCTACCGCAAC
118 TGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
*** * * *
19829777 CCTCGGTCCCATCTGATCTTATACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCG
183 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* *
19829842 TATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCTGCCAGAGGGGCGGGATGCGC
248 TATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCTGCCAGAGGGGCGGGATGCGC
*
19829907 AAGCCGGGGATCGATAGGGT
313 AAGCCGGGGATCGATCGGGT
19829927 GGTAGTTGGG
Statistics
Matches: 3376, Mismatches: 433, Indels: 201
0.84 0.11 0.05
Matches are distributed among these distances:
870 2 0.00
871 10 0.00
872 1 0.00
873 1 0.00
874 5 0.00
876 5 0.00
878 2 0.00
879 6 0.00
882 1 0.00
884 186 0.06
885 5 0.00
886 415 0.12
887 54 0.02
888 366 0.11
889 414 0.12
890 68 0.02
891 3 0.00
892 7 0.00
893 85 0.03
894 692 0.20
895 9 0.00
896 126 0.04
897 4 0.00
898 12 0.00
899 61 0.02
900 386 0.11
901 208 0.06
902 31 0.01
903 177 0.05
904 2 0.00
906 7 0.00
907 2 0.00
908 5 0.00
909 1 0.00
911 5 0.00
914 5 0.00
915 5 0.00
916 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (888 bp):
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCTCCGGAACCCCAATGCCACCGGTCAGATTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
AAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAACGTGCGGGCGCTCAGCCTGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
ATCGGGTCCCCTTCAGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGCGGGCGGGCGGGCGGCACT
ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTT
TGCGGTTCCAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
Found at i:19829834 original size:26 final size:26
Alignment explanation
Indices: 19829794--19829846 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19829784 CCCATCTGAT
* *
19829794 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
19829820 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
19829846 C
1 C
19829847 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:19831424 original size:26 final size:26
Alignment explanation
Indices: 19831395--19831448 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
19831385 CCGGTCCGAT
19831395 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19831421 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19831447 CT
1 CT
19831449 AAGTCAACCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19832898 original size:901 final size:900
Alignment explanation
Indices: 19829820--19842135 Score: 14631
Period size: 879 Copynumber: 13.8 Consensus size: 900
19829810 ACTCCGTATG
* * * * *
19829820 CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCAC-AAA--A-CGAGCGTGCGGGC--G
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * * * *
19829879 CTC-A-GCCTGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGTTGGG-TTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * * *
19829941 GCAAATTTTAATATTTCTGCATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATTGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
***
19830006 TTAAGCCTTTGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATC-A----T----
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-CGATTTTTGAAA
* *
19830062 -TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAG---T----------TT--T----
260 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
19830107 G-GA-CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
19830170 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTAGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
19830235 TAATATCTCAAATGCTCTTTACGGTGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
19830300 TATAAGGGCCAAGCACCAGCACCCATCACACATTATGTACGCACACCCCCCGGCCCCCCCGATCG
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
* * * *
19830365 TCGGAACCCCAATGCTGCCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCTCGACGAAGA
585 CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGA
* * * *
19830430 AAAATGCGACACCCGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGG-CCTGGTCTGA
650 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-GGTCCGA
* * *
19830494 TCTTAGACTGGGAATGAACTCCGTATGCTTGGACTGGGAATGAACTTCGTATGCCTGAGTCAACC
714 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * ** *
19830559 CACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGA-GGGCGGGATGTGCAAGCCAAGGATCGAC-
779 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT
* * * * * * *
19830622 CGGGTCCCCCTTTACGTGCTGCCGATCCTGCTATCGTATCCCTCGATCCGGTC-ATAT
844 CGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCTGGTCTA-AT
* * * * * *
19830679 CTTAGACTGGGAATGAACTCCATATGCCGAAGCCAACCGACGAAACCAGCAGGTGGGCGGGCGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * **
19830744 CACTACGCCGGCCAGAGAGGCTGGATAAGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
19830809 GCAAATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
** * *
19830874 TTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTAAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* ** * *
19830939 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGACCCAAACTTGGTAGATG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * * * *
19831004 TGATCCTTTTATTTTTGTTGGCATGCACGAAAACATTCAGATAAAAGCTCAAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
19831069 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
19831134 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
19831199 ATAAGGGCCAAGCACCAGCACCCATCTCACATCATGTGCGCACACCCCCACCGGGCCCCCCGATC
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCGGCCCCCCCGATC
* * *
19831264 GTCGGAACCCCAATGCCGCCGGTCAGGTTCACCGACGATGCTCCGACGATGGTGCCCCGATGAAG
584 GCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
* * * * *
19831329 AAAAATACGGCACCAGCACATGCCCGAGTCCAACATGTGCTGCCGTAACCCTCAGTCCGGTCCGA
649 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
19831394 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG-CTAAGTCAACC
714 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * *
19831458 CACGAAATGAGCGTGCGGACGTTCGGCCAGCCAGAGGGGCGGGATACAG-AAGCCGGGGATCGG-
779 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC-GCAAGCCGGGGATCGGC
* * * **
19831521 TCGGGTCCCCCTCTACGTGCTGCCGATCCTGCT-GCTGCTAA-CCTCGGTCTGGTCCGAT
843 TCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTATC-GC-AACCCTCGGTCTGGTCTAAT
* * * * *
19831579 CTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGAGCAGGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * *
19831644 CACTATGCCGGCCAGAAAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
19831709 GCACATCTTCATATTTCTGCATGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCGC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
** *
19831774 TTAAGCCTTCGTGTGAAGTTTCATGGCAAG-CTGACTCG-TTTCTATTTTTCATGATTTTTGAAA
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-GACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * * **
19831837 ATTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGAAAAAAGTTTTGGCCCCAAACTTGGT-GAA
260 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG-A
* * *
19831901 TGTGATCCTTGTATTTTTCTTGGCATGAACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
19831966 TTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTCATGGCTACTGGCAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
19832031 GTTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
19832096 ATATAAGGGCCAAGCACCAGCACCCATCACACATCATGTTCGCACACCAGCCCCTCGGCCCCCTC
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C--CCCC-CGGCCCCCCC
* * * *
19832161 AATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAACGATGCTCCGACGATGGTGCCCCGAC
580 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * * * * *
19832226 GAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTACAGCAACCCTCGATTCGGT
645 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* * * * * *
19832291 CCGATCTTAGACTGCGAATGCACACCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTA
710 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
19832356 AACCCACGAAACGAGCGGGCGGGCGCCCAGTCGGCTAGAGGGGTGGGATGTGCAAGCCGAGGATC
775 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * **
19832421 GGCT-GGGTCCCCCTCTGCATGCTGTCAATCCTGCTATCACAGCCCTCAGTCCAGTCTAAT
840 GGCTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCTGGTCTAAT
* * ** *
19832481 CTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAAATGACGAAACGAGCGGGCGGGTGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
19832546 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * ** * *
19832611 GAAAATCTTCATATTTCTGTGTGTCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
**
19832676 TTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * * *
19832740 TATTTACGGTTCGGGATTTTTT-AAATTTTTTTGGAAGGTGTTTTGGCCCCAAACTTGGCAGACA
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
19832804 TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTATAAACTCGAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
19832869 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
19832934 AAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTTTTGAGGTTTGATGAGGGATAGGGGGCTAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * *
19832999 ATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTACGCACACCCCCTGGCTCCCCCGATCAC
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGC
* *
19833064 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCTG-CGATGGTGCCCC-AGGGAAG
586 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GACGATGGTGCCCCGA-CGAAG
** * * * *** * *
19833127 AAAAATGCCTCACTAGCACATGCTCGAGCCTAGCATGCATTGCCGTAACCCTCGGTCCGGTCTGA
649 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
*
19833192 TCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
714 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * * *
19833257 CATGAAACGAGCGTGTGGGCGCTCAGTCGGTCGGACGGGCGGGATACGCAAGCCGGGGATCGACT
779 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT
* * * * *
19833322 -GGGTCCCCCTTTGCGTGCTGCCGATCCTGCT-TCCGCAACCCTTGGTCTGGTTTGAT
844 CGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTAT-CGCAACCCTCGGTCTGGTCTAAT
* ** * *
19833378 CTTAGACTAGGAATGAACTCTATATGCCTAAGCCAACCGATGAAACGAGCGAGCGGTCGGGCGGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GG-CGGGCGGG
* * *
19833443 CGGGCACTAC-CTCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGGAGGTGGG
62 CGGGCACTACGC-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
19833507 TTTAGGCACATCTTCATATTTCTACGTTCCAATGCCATTTTTATGCCTTGTAAATTCATACAATG
126 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * * *
19833572 GTCCCTTAAGCCTTCGCATGAAATTTCTTGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTC
191 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
19833637 AAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCTCAACCTTGGT
256 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
19833702 AGACGTGATCCTTTTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGTAGTGTACA
321 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* **
19833767 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGTGGCAAA
386 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
19833832 CCTGTAAAATCTCAAATGCTCTCTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGCGATAGAGGG
451 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
19833897 CCAATATAAGGGCCAAGTACGAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
516 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCC
* * * *
19833962 GATCACCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGTCCCGAC
580 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* *
19834027 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCACGTGCTGCCGTAACCCTCGGTCCGGT
645 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* * *
19834092 TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTACGTATGCCTAAGTC
710 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * *
19834157 AACCCACGAAACGAGCGTGCAGGCGCTCAACTGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATC
775 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * * *
19834222 GG-TCGGGTCCCCCTCTGTGTGTTGCCGATTCTGCTATTGCAACCCTCAGTCTGATCCAAT
840 GGCTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCTGGTCTAAT
*
19834282 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGCCGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGA----GC-G--G-G
* * * * * * *
19834347 CGGGCGGCCAGGCGGGCGCTGCGCCGACCAGAGAGACTGGATGCACATGCCGTGGATTGATAGGG
54 CGGGC-G---GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * *
19834412 TGGTAGGTGGGTTTAGGCACATCATCATATTTCTGCATCCCAATGCCATTTTTATGCCTTGTAAA
115 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
*
19834477 TTCATACAATGGTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
180 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * *
19834542 TCATGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAGTTTCTTCGGAAGGAGTTTTGGCC
245 TCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
*
19834607 CCAAACTTGGTAGACGTGAACCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
310 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
19834672 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTA
375 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
19834737 CTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
440 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
19834802 GAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
505 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * * ** * * **
19834867 CGGCCCCCCCGATCGTCAGAACTCCAATGCCACCGGTCAGGTTATTTGATGATGCTCAGGTGATG
570 CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATG
** * * * *
19834932 GTGCCCCGGGGAAGAAAGATGCGGCACCAGCACATGCCCGGGCCCAACATGTGCTTCCGCAACCC
635 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
** * ** * * *
19834997 TCGGTATGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTAGGACTGAACTCCTTA
700 TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * * *
19835062 TGACTAAGTCAACCCATGAAATGAGCGTACGGGCTCTCAGCCGGCCAGAGGGGCGGGATGAGCAA
765 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * ** * * * *
19835127 GTCGGGGATTGG-TCGGGTCCCCTTCTATGTGCTGTCGATCCTGCTGTCGTAACCCTTGGTCCGG
830 GCCGGGGATCGGCTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCTGG
*
19835191 TCCAAT
895 TCTAAT
*
19835197 CTTAGACTGGGAATGAACTCCATATGCCTAA-CCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGC--G--GG
* *
19835261 CGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGT
58 C--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
** * *
19835326 AGGTAAGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
119 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * * *
19835391 CATAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTAT
184 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * * * * *
19835456 GATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGTAGTTTTGGCCCGAT
249 GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * * *
19835521 ACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCTAA
314 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
19835586 CTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGG
379 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
19835651 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGCTTGATGAGGGA
444 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
19835716 TA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTG--CACCCCCCGG-
509 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * *
19835777 CCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGCTCTCCGACGATGCTCATG-CGATGGTG
574 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC-CGACGATGGTG
* * * * *
19835841 CCCCGGA-GAAGAAAAATGCGACA-CAGCACGTACCCGAGCCCAGCATGTGCTGTCGCAACCCTT
638 CCCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * *
19835904 GGTCCGGTCCGATCTTAGACTGGAAATGAACTTCATATGCTTAGACTGAGAATGAACTCCGTATG
702 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * **
19835969 CCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGTACAAGC
767 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * *
19836034 CGGGTATCGGC-CTGGT--CCC-C--C-T-CTGT-G----TGCTATCGTAACCCTCGGTCTGGTC
832 CGGGGATCGGCTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCTGGTC
*
19836086 CAAT
897 TAAT
* * *
19836090 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGA----GCGAGCGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * *
19836151 CACTACGTCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGTTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * *
19836216 GCACATCTTCATATATCTTCATGCCAATGCAATTTTTATGGCTTGTAAATTCGTACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
19836281 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * *
19836346 TTTTTGCGGTTCGGGATTTTTTTAAATTTTTTTC-GAGGGATTTTTGGCCCCAAACTTGGTAGAC
261 TTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
19836410 GTGATCCTTGTA-TTTTATTGGCATGCAAAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
19836474 TTTGTGACAAATTGAAAAAAGTGTCCCGA-TTCTAAACACTTTAATGGCTACTGGCAGCAAACCT
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCT
* *
19836538 CTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
19836603 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCTCACACCCCCCCGGCCCCCTCGAT
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGAT
* * * *
19836668 CGCC-GAAACCCAA-----------A-----T---AC--CG-TCCGGCGATGGTGCCCCGGCGAA
583 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAA
* * *
19836710 GAAAAATGCGGGACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCG
648 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCG
* * *
19836775 ATCTTAGACTTGGAATTAAC-CCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAA
713 ATCTTAGACTGGGAATGAACTCC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
19836839 CCCAAC-AAACGAGCGTGCGGGCGCTTAGCCGGACAAAGGGGCGGGATGCACAAGCCGGGGATC-
777 CCC-ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* ** * * * * *
19836902 GATCGGGTCCCCCTCTGTATGTTG-CTGATCCTGCTACCGTAACCCTTGGTCTGGTCTGAT
841 GCTCGGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTATCGCAACCCTCGGTCTGGTCTAAT
* * * *
19836962 CTTAGACTGAGAGTAAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGTATAGGCGGACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-CG---A-GCGGGCGGG
* * * * * * *
19837027 CGGGCGGGCTCTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCATGGATTGATAGAGTGGTAGGC
58 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
19837092 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
123 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
19837157 ATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
188 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
** * *
19837222 TTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTT
253 TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * * * * * *
19837287 GGTTGACGGGATCCTTGTATTTTTATTGGCATGCACAGAAAAATTTAGGTAAAAACTCTAAGTGT
318 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * * * * *
19837352 ACAAGATTTTGTGACAAATTGAAAAAAATGTCCCCATTCCAAACACTTTAATGGCTACTAGCAGC
383 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * **
19837417 AAACCTCTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGG
448 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
19837482 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCTCACACCCCCCCGGCCCC
513 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCC
* *
19837547 CTCGATCGCCGGAACCCCAA---------T-A-------C--CG-T-CT--GACGATGGTGCCCT
577 CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* * * * * * *
19837589 GGCGAAGAAAAATACGGGACCAGCACACGCCTGAACCTAGCATGTGCTGCCGCAACCCTCGGTCC
642 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * * ** *
19837654 AGTTCGATCTTAGATTGCAAATTAAC-CCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
707 GGTCCGATCTTAGACTGGGAATGAACTCC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
19837718 AGTCAACCCACGAAACGAGTGCGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGGG
771 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* ** * * *
19837783 GATCGG-TCGGGTCCCCCTCTGCGTGTTG-CTGATCCTGCTGCCGTAACCCTTGGTCTGGTCCAA
836 GATCGGCTCGGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTATCGCAACCCTCGGTCTGGTCTAA
19837846 T
900 T
* *
19837847 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGTATGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----GGGCGGGCGGG
19837912 CGGGCAGGCTCTACGCCGGCCAGAGAGGA-GGGATTGCGCAAGCCGTGGATCGATAGGTGTGGTA
62 CGGGCA----CTACGCCGGCCAGAGA-GACGGGA-TGCGCAAGCCGTGGATCGATAGG-GTGGTA
* * * **
19837976 GGCGGGTTTAGCCACAATCTT--TAATTCTATAT-CCAAT-CC-TTTTTCATGGCTTGTAAATTC
120 GGTGGGTTTAGGCAC-ATCTTCATATTTCTGCATGCCAATGCCATTTTT-ATGGCTTGTAAATTC
* *
19838036 ATACAATGG-CCTTTAAGCTGCTTCACGTGAAGTTTCATGGCAAGATGACGTCGTTTTTCTATTT
183 ATACAATGGTCCCTTAAGC--CTTCACGTGAAGTTTCATGGCAAGACGAC-TCG-TTTTCTATTT
* * *
19838100 TTCACCGGATTTTTTGAAAACATTTTTGCGGTTTCAAGA-TTTTTAAATTTTTTTTCGGAAGGAG
244 TTCA-C-GA-TTTTTG-AAAC-TTTTTACGG-TTCGAGATTTTTTAAA-ATTTTTTCGGAAGGAG
* *
19838164 TTTTGGCCCC-AACTTGGTAGACGTGATCCTTTTAATTTTTGTTGGCATGTACAAAAAAATTCAA
302 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTC-A
* *
19838228 GCTAAAAACTCGAAGTGTAAAAGATTTTGTG--CATTTGAAAAAAGTGTCCCCAGATTTTA-ACA
365 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC--ATTTCAGACA
* *
19838290 CTTTAATGGCTATTGGCAGCAAACCTGTAAAATCGTCAAATGCTCTTTAAGGGGGTGTGGGTTTC
428 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATC-TCAAATGCTCTTTAAGGGGGTGTGAG-TTC
* * * ** *
19838355 TCG-GAGATTGATGAGGTATAGGGGGCCAATATAAGGGCCAAGTATCATTACCCATCGCATATCA
491 TCGAG-GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
19838419 TGTGCGTACACCCCCCGGCCCTCCCGATCGTCGGAACCTCAATGCCGTCGGTCAGGTTCTCCAGT
555 TGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCG-C---C-GG---T-CAG-
* *
19838484 GATGCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAAGCGGCACCAGCACATGCCC
610 G-TTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * ** * * *
19838549 GAGCCCAGCATGTCCTACTACAACCCTCGGTCAGGTCCGATCTTAGACTGGGAATCACCTCCGTA
674 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
19838614 TGCTTAGACTGGTAATGAACTCCGTATGCCTAAGACAACCCATGAAACGAGCGTGCGGGCGCTCA
739 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
19838679 ACTGTCCAGAGGGGCGGGAAGCGCAAGTCGGGGATC-GATCGGGT--CCC-C--C-T-CTG-C-A
804 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCGGGTCCCCCTCTGCGTGCTGTCGA
19838734 ---TGC--T----A-------TC--G----AT
869 TCCTGCTATCGCAACCCTCGGTCTGGTCTAAT
* * *
19838744 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGTCGAAAC-A---AGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * *
19838805 CATTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGAAAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * **
19838870 GCACATCCTCATATTGCTGTATGTGAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * *
19838935 TTAAGCCTTCACTTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTTAACAAATTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* *
19839000 TTTTTGCGGTTCGAGATTTTTTAGAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
19839065 TGATCCTTGAATTTTTGTTGGCAAGCACAAAAACATTCAGCTAAAAACTCGAAGTGTAAAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * *
19839130 TTGTGACTATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGACAACAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
19839195 GAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGACAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
19839260 ATAAGGGCCAAGTACCAGCACCCATCGCACAACATGTGATGAACACCCCCTTCGGCCCCCTCGAT
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG-CGCACACCCCC--CGGCCCCCCCGAT
* * * *
19839325 CGCTGGAACCCCAATGCCGTCAGTCAGGTTCTCCGACCATGCTCCGACGATGGTGCCCCGACGAA
583 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAA
* * ** * * *
19839390 AAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTTGCAACCCCCAGTCCGGTCTG
648 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCG
* *
19839455 GTCTTAGACTGGGAATGAACTCCGTATGCTTAGACCT-GGAATGAACTTCGTATGCCTAAGTCAA
713 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-CTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * ** * * *
19839519 CCCACAAAACGAGCATACGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCTGGAGATTGG
777 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* ** * * * * *
19839584 -TCGTGTCCCCCTCAACATGCTG-CTGATCCTGCTACCGCAACCCTTGGTCTGATCTGAT
842 CTCGGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTATCGCAACCCTCGGTCTGGTCTAAT
*
19839642 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGAACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG-G--CGGG
* *
19839707 CGGGCACTACGCCGACCAGAGAGACGGGATGCGCAGGCCGTGGATCGATAGGGTGGTAGGTGGGT
62 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
19839772 TTAGACACATATTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
19839837 TCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCGTTTTTTATTTTTCACGATTTTTA
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* ** * *
19839902 AAACTTTTTGCAATTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACATGGTC
257 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT-
* * *
19839967 A-ACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTAGA
321 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
19840031 AGATTTTGTGACTATTTGAGAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
386 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * * *
19840096 CCTGTGAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCCAAGTTTGATGAGGGATAAGGGG
451 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
19840161 ACAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCTGGCCCCCC
516 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-C-GGCCCCCC
* * * * * * *
19840226 CGATCGCTGGAACCCTAATGCTGTCAGTCAGGTTCTCC-AGTGATACTCCGACGATGGTGCCCCG
579 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGCCCCG
* * * * * * ***
19840290 ACAAAGAAAAATACGGCACCAGTACATGCCCGAGCCCAACATGAGTTATTGCAA-CC-C--T-C-
643 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
19840349 G---G-TC-----C-------G-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAG
708 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * *
19840394 TCAACCCGCGAAATGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATACGCAAGTCGAGGA
773 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * *
19840459 TCGGCT-GGGTCCCCCTCTGTGTGCTGTCGATCCTACTGA-GGCAACCCTCGATCTGGTCTGAT
838 TCGGCTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCT-ATCGCAACCCTCGGTCTGGTCTAAT
* * **
19840521 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAATTAGCGGGCGCGTGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG-GC--GGGCGGG
*
19840586 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
62 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
19840651 TTAGGTACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* ** ** * * *
19840716 TCCCTTAAGCCTTCACGTGACGTTAAATGGCAAGTTGACTCATGTTCTATTTTTCATGATTTTTG
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* ***
19840781 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGCTTGAAACTTGGTA
257 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
** * * * * * *
19840846 GACAAGATCATTGTATTTTTTTTGTCATGCACAAAAAAAATCAGCTAACAACTCGAAGTGTACTA
322 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
19840911 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTATACACTTTAATGGCGACTGGCAGCAAAC
387 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
19840976 C-GATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAAGGATAAGGGG
452 CTG-TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
19841040 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCGGCCCCCCCG
516 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * * * *
19841105 ATCGCTGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCG-TCGCTTCGACGATGGTGCCCCGAC
581 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT-GCTCCGACGATGGTGCCCCGAC
* * * ** *
19841169 GAAGAAAAATGCGACACCAACACATGCCTGAGCCCAGCATGTGCTATCGTAA----C--T-C--T
645 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
*
19841225 -CGA---T---CT--G-AT---CT--G-A-GCTTAGACTGGGAATGAACTCCGTATGCCTAAGGC
710 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * ** * * * *
19841273 AACCCA-AAAATGAGCGTGCGGACGCTCAATCGGCCAGAGTGGCGAGATGCGCAAGTCAGGGATC
775 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * ** * ** ** *
19841337 GGC-CGGGTCTCGCTCTGCGTACTGTCAATCCTACTGCCACAACCCTCAATCTATTCTGAT
840 GGCTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCTGGTCTAAT
* * * *
19841397 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGAGTGGG-TGG-GGGC--G
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* *
19841458 CTCTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* ** *
19841523 GTACATCTTCATATTTCTATATGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
19841588 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA-
* *
19841653 CTTTTTACGGTTCGGGACTTTTTTAAAATTTTTTCGGGAGGAGTTTTGGCCCCAAACTTGGTAGA
260 CTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * * * *
19841718 CATCATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAAGTAGAAGTGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * *
19841783 TTTT-TGACCATTTGAAAAAATTATCCCCATTCCAGACACTTTAATGGCTACTGGTAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * *
19841847 GTAAAATCTTAAATACTCTTTAAGGGGGTGTGAGTTATCGAGGTTTGATGAAGGATAGGGGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
19841912 ATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCACACACCCCCCCGGCCCCCCCGAA
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGAT
** * * * * **
19841977 CGCCAAAACCCCAATGCCGCCGGTCAAGTTCTCCGGCTATGCTCTGACGATGGTGCCCCGGTGAA
583 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAA
* * * * * * * *
19842042 GAAAAATACGGCACTAGCACATGCCCGAGACCAGCATGTGCTGTCACAGCCCTTGGTCCGGTCTG
648 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCG
19842107 ATCTTAGACTGGGAATGAACTCCGTATGC
713 ATCTTAGACTGGGAATGAACTCCGTATGC
19842136 CTAAGTGAAC
Statistics
Matches: 9970, Mismatches: 1157, Indels: 623
0.85 0.10 0.05
Matches are distributed among these distances:
858 2 0.00
859 66 0.01
860 162 0.02
861 2 0.00
862 6 0.00
863 10 0.00
865 4 0.00
866 2 0.00
867 248 0.02
868 302 0.03
869 177 0.02
870 219 0.02
871 3 0.00
872 65 0.01
873 2 0.00
874 7 0.00
875 67 0.01
876 222 0.02
877 431 0.04
878 366 0.04
879 647 0.06
880 18 0.00
881 39 0.00
882 24 0.00
883 62 0.01
884 306 0.03
885 616 0.06
886 74 0.01
887 49 0.00
888 6 0.00
889 19 0.00
890 9 0.00
891 4 0.00
892 58 0.01
893 143 0.01
894 102 0.01
895 68 0.01
896 7 0.00
897 361 0.04
898 276 0.03
899 356 0.04
900 458 0.05
901 618 0.06
902 367 0.04
903 285 0.03
904 329 0.03
905 279 0.03
906 533 0.05
907 15 0.00
908 4 0.00
909 49 0.00
910 423 0.04
911 5 0.00
912 9 0.00
913 5 0.00
914 10 0.00
915 307 0.03
916 463 0.05
917 1 0.00
919 1 0.00
921 3 0.00
922 2 0.00
923 1 0.00
924 2 0.00
925 2 0.00
926 5 0.00
927 1 0.00
928 184 0.02
929 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGC
CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAA
AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCG
GGTCCCCCTCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCTGGTCTAAT
Found at i:19833222 original size:26 final size:26
Alignment explanation
Indices: 19833193--19833245 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19833183 CCGGTCTGAT
*
19833193 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19833219 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19833245 C
1 C
19833246 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19834126 original size:26 final size:26
Alignment explanation
Indices: 19834097--19834149 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19834087 CCGGTTCGAT
* *
19834097 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTACGTATG
19834123 CTTAGACTGGAAATGAACTACGTATG
1 CTTAGACTGGAAATGAACTACGTATG
19834149 C
1 C
19834150 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTACGTATG
Found at i:19834348 original size:12 final size:12
Alignment explanation
Indices: 19834331--19834364 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
19834321 ACGAAACGAG
19834331 CGAGCGGGCGGC
1 CGAGCGGGCGGC
19834343 CGAGCGGGCGGC
1 CGAGCGGGCGGC
19834355 C-AGGCGGGCG
1 CGA-GCGGGCG
19834365 CTGCGCCGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 1 0.05
12 20 0.95
ACGTcount: A:0.09, C:0.32, G:0.59, T:0.00
Consensus pattern (12 bp):
CGAGCGGGCGGC
Found at i:19835257 original size:8 final size:8
Alignment explanation
Indices: 19835244--19835274 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
19835234 GACGAAACGA
*
19835244 GCGGGCGG
1 GCGGGCAG
19835252 GCGGGCAG
1 GCGGGCAG
19835260 GCGGGCAG
1 GCGGGCAG
19835268 GCGGGCA
1 GCGGGCA
19835275 CTACGTCGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.10, C:0.26, G:0.65, T:0.00
Consensus pattern (8 bp):
GCGGGCAG
Found at i:19835968 original size:26 final size:26
Alignment explanation
Indices: 19835917--19835969 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19835907 CCGGTCCGAT
*
19835917 CTTAGACTGGAAATGAACTTCATATG
1 CTTAGACTGGAAATGAACTCCATATG
*
19835943 CTTAGACT-GAGAATGAACTCCGTATG
1 CTTAGACTGGA-AATGAACTCCATATG
19835969 C
1 C
19835970 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:19836815 original size:26 final size:26
Alignment explanation
Indices: 19836777--19836829 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19836767 CCGGTCCGAT
* *
19836777 CTTAGACTTGGAATTAAC-CCTGTATG
1 CTTAGACTGGGAATGAACTCC-GTATG
19836803 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19836829 C
1 C
19836830 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19837868 original size:885 final size:888
Alignment explanation
Indices: 19829887--19842135 Score: 13238
Period size: 885 Copynumber: 13.7 Consensus size: 888
19829877 CGCTCAGCCT
* * * * * * *
19829887 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGTTGGG-TTAGGCAAATTTTA
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
19829951 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATTGTCCCTTAAGCCTTT
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
** * *
19830016 GTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATCA----T-----TTTTTACGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
* *
19830072 TCGGGATTTTTTAAAATTTTTTCGGAAAGAG---T----------TT--T----G-GA-CCTTGT
196 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
19830116 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
261 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * *
19830181 TTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTAGCAGCAAACCTGTAATATCTCAA
326 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
19830246 ATGCTCTTTACGGTGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
391 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * *
19830311 AGCACCAGCACCCATCACACATTATGTACGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCC
456 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCC
* *
19830375 AATGCTGCCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCTCGACGAAGAAAAATGCGAC
521 AA--------GTC-A----T-CG-CGATGCT-CGACGATGGTGCCCCGACGAAGAAAAATGCGGC
* *
19830440 ACCCGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGG-CCTGG-TCTGATCTTAGACT
570 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-GGTTC-GATCTTAGACT
* * *
19830503 GGGAATGAACTCCGTATGCTTGGACTGGGAATGAACTTCGTATGCCTGAGTCAACCCACGAAACG
633 GGGAATGAAC-CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * ** **
19830568 AGCGTGCGGGTGCTCAGCCGGCCAGA-GGGCGGGATGTGCAAGCCAAGGATCGACCGGGTCCCCC
697 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC
* * * ** * * *
19830632 TTTACGTGCTGCCGATCCTGCTATCGTATCCCTCGATCCGGT-CATATCTTAGACTGGGAATGAA
762 TCTGCGTGCTGCTGATCCTGCTGCCGTAACCCTCGGTCTGGTCCA-ATCTTAGACTGGGAATGAA
* * * * *
19830696 CTCCATATGCCGAAGCCAACCGACGAAACCAGC-A---GG-TGGGCGGGCGAGCACTACGCCG
826 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGGCGGACGGGCGGGCGGGCACTACGCCG
* * ** *
19830754 GCCAGAGAGGCTGGATAAGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
19830819 ATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
** * * *
19830884 GTGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
** * * *
19830949 TCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGACCCAAACTTGGTAGATGTGATCCTTTT
196 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * * * *
19831014 ATTTTTGTTGGCATGCACGAAAACATTCAGATAAAAGCTCAAAGTGTACAAGATTTTGTGACCAT
261 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
19831079 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
326 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
19831144 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
391 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * *
19831209 AGCACCAGCACCCATCTCACATCATGTGCGCACACCCCCACCGGGCCCCCCGATCGTCGGAACCC
456 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CCGGCCCCCCCGATCGCCGGAACCC
* *
19831274 CAATGCCGCCGGTCAGGTTCACCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACGG
520 CAA--------GTCA---T---CG-CGATGCT-CGACGATGGTGCCCCGACGAAGAAAAATGCGG
* * * * *
19831339 CACCAGCACATGCCCGAGTCCAACATGTGCTGCCGTAACCCTCAGTCCGGTCCGATCTTAGACTG
569 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAGACTG
*
19831404 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG-CTAAGTCAACCCACGAAATGA
634 GGAATGAAC-CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * *
19831468 GCGTGCGGACGTTCGGCCAGCCAGAGGGGCGGGATACAG-AAGCCGGGGATCGGTCGGGTCCCCC
698 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC-GCAAGCCGGGGATCGGTCGGGTCCCCC
* * * * *
19831532 TCTACGTGCTGCCGATCCTGCTGCTGCTAA-CCTCGGTCTGGTCCGATCTTAGACTGGGAATAAA
762 TCTGCGTGCTGCTGATCCTGCTGCCG-TAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAA
* * *
19831596 CTCCGTATGCCTAAGCCAACCGACGAAACGAGTGA-GC--A--GGCAGGCGGGCACTATGCCG
826 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGGCGGACGGGCGGGCGGGCACTACGCCG
* *
19831654 GCCAGAAAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
19831719 ATATTTCTGCATGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCGCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
** * *
19831784 GTGTGAAGTTTCATGGCAAG-CTGACTCG-TTTCTATTTTTCATGATTTTTGAAAATTTTTACGG
131 ACGTGAAGTTTCATGGCAAGAC-GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGG
* * * ** *
19831847 TTTGGGATTTTTTAAAATTTTTTCGAAAAAAGTTTTGGCCCCAAACTTGGT-GAATGTGATCCTT
195 TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG-ACGTGATCCTT
* * *
19831911 GTATTTTTCTTGGCATGAACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACC
259 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* *
19831976 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTCATGGCTACTGGCAGCAAACCTGTTAAATCTC
324 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
19832041 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
389 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * * * *
19832106 CAAGCACCAGCACCCATCACACATCATGTTCGCACACCAGCCCCTCGGCCCCCTCAATCGTCGGA
454 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACC--CCCC-CGGCCCCCCCGATCGCCGGA
*
19832171 ACCCCAATGCCGTCGGTCAGGTTCTCCAACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
516 ACCCCAA--------GTCA-----T-C-GCGATGCT-CGACGATGGTGCCCCGACGAAGAAAAAT
* * * * * * *
19832236 GTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTACAGCAACCCTCGATTCGGTCCGATCTTAG
565 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAG
* * * * *
19832301 ACTGCGAATGCACACCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTAAACCCACGAA
630 ACTGGGAATGAAC-CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * * * *
19832366 ACGAGCGGGCGGGCGCCCAGTCGGCTAGAGGGGTGGGATGTGCAAGCCGAGGATCGG-CTGGGTC
694 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTC
* * ** ** * * ** * *
19832430 CCCCTCTGCATGCTG-TCAATCCTGCTATCACAGCCCTCAGTCCAGTCTAATCTTAGACTAGGAA
758 CCCCTCTGCGTGCTGCT-GATCCTGCTGCCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAA
* ** *
19832494 TGAACTCTGTATGCCTAAGCCAAATGACGAAACGAGC---G-GG-CGGGTGGGCGGGCACTACGC
822 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGGCGGACGGGCGGGCGGGCACTACGC
19832554 CG
887 CG
* *
19832556 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAAAATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
** * *
19832621 ATATTTCTGTGTGTCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
** * * *
19832686 GTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAACTATTTACGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
* * * * *
19832750 TCGGGATTTTTT-AAATTTTTTTGGAAGGTGTTTTGGCCCCAAACTTGGCAGACATGATCCTTGT
196 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
19832814 ATTTTTGTTGGCATGCAAAAAAAAATTCAGCTATAAACTCGAAGTGTACAAGATTTTGTGACCAT
261 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
19832879 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
326 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * *
19832944 ATACTCTTTAAGGGGGTGTGAGTTTTTGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCA
391 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * *
19833009 AGTACCAGCACCCATCGTACATCATGTACGCACA-CCCCCTGGCTCCCCCGATCACCGGAACCCC
456 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCC
* *
19833073 AATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCTG-CGATGGTGCCCC-AGGGAAGAAAAATGCC
521 AA--------GTCA-----T-C-GCGATGCT-C-GACGATGGTGCCCCGA-CGAAGAAAAATGCG
* * * * *** * *
19833136 TCACTAGCACATGCTCGAGCCTAGCATGCATTGCCGTAACCCTCGGTCCGG-TCTGATCTTAGAT
568 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTC-GATCTTAGAC
*
19833200 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
632 TGGGAATGAAC-CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * * *
19833265 GAGCGTGTGGGCGCTCAGTCGGTCGGACGGGCGGGATACGCAAGCCGGGGATC-GACTGGGTCCC
696 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCC
* * * * * *** *
19833329 CCTTTGCGTGCTGCCGATCCTGCTTCCGCAACCCTTGGTCTGGTTTGATCTTAGACTAGGAATGA
760 CCTCTGCGTGCTGCTGATCCTGCTGCCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGA
** * * *
19833394 ACTCTATATGCCTAAGCCAACCGATGAAACGAGCGA-GCGGTCGGGCGGACGGGCACTAC-CTCG
825 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGGCGGACGGGCGGGCGGGCACTACGC-CG
* * *
19833457 GCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGGAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * * *
19833522 ATATTTCTACGTTCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * * ** ** *
19833587 GCATGAAATTTCTTGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
* * * * *
19833652 TCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCTCAACCTTGGTAGACGTGATCCTTTT
196 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
19833717 ATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGTAGTGTACAAGATTTTGTGACCAT
261 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* **
19833782 TTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGTGGCAAACCTGTAAAATCTCAA
326 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * *
19833847 ATGCTCTCTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGCGATAGAGGGCCAATATAAGGGCCA
391 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * *
19833912 AGTACGAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCACCGGAACCCT
456 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCC
*
19833977 AATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGTCCCGACGAAGAAAAATGCGGC
521 AA--------GTCA-----T-C-GCGATGCT-CGACGATGGTGCCCCGACGAAGAAAAATGCGGC
* *
19834042 ACCAGCACATGCCCGAGCCCAGCACGTGCTGCCGTAACCCTCGGTCCGGTTCGATCTTAGACTGG
570 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAGACTGG
* *
19834107 GAATGAACTCCGTATGCTTAGACTGGAAATGAACTACGTATGCCTAAGTCAACCCACGAAACGAG
635 GAATGAAC-CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * *
19834172 CGTGCAGGCGCTCAACTGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATCGGTCGGGTCCCCCTC
699 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
* * * * *** * * *
19834237 TGTGTGTTGCCGATTCTGCTATTGCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTC
764 TGCGTGCTGCTGATCCTGCTGCCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTC
* *
19834302 TGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGCCGAGCGGGCGGCCAGGCGGGCGCT
829 CGTATGCCTAAGCCAACCGACGAAACGAGCGA---GGC-G--GA-CGGGC-G---GGCGGGCACT
*
19834367 GCGCCG
883 ACGCCG
* * * * * *
19834373 ACCAGAGAGACTGGATGCACATGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCATC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
19834438 ATATTTCTGCATCCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCACTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
19834503 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
* * * *
19834568 TCAAGATTTTTTAAAGTTTCTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAACCTTGT
196 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
19834633 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
261 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* *
19834698 TTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAA
326 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
19834763 ATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCA
391 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* *
19834828 AGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCAGAACTCC
456 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAA--CC
* * * ** ** *
19834892 AATGCCACCGGTCAGGTTATTTGATGATGCTCAGGTGATGGTGCCCCGGGGAAGAAAGATGCGGC
519 ----CCA------A-GTCA-TCG-CGATGCTC-GACGATGGTGCCCCGACGAAGAAAAATGCGGC
* * * **
19834957 ACCAGCACATGCCCGGGCCCAACATGTGCTTCCGCAACCCTCGGTATGG-TCTGATCTTAGACTG
570 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTC-GATCTTAGACTG
** * * * * * *
19835021 GGAATGAACTTTGTATGCTTAGACTAGGACTGAACTCCTTATGACTAAGTCAACCCATGAAATGA
634 GGAATGAAC-CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * *
19835086 GCGTACGGGCTCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGTCGGGGATTGGTCGGGTCCCCTT
698 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCT
** * * *
19835151 CTATGTGCTG-TCGATCCTGCTGTCGTAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAAC
763 CTGCGTGCTGCT-GATCCTGCTGCCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAAC
* * *
19835215 TCCATATGCCTAA-CCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCGGGCAGGCGGGCACTAC
827 TCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-AGGC-GG-A--CGGGCGGGCGGGCACTAC
*
19835279 GTCG
885 GCCG
* **
19835283 GCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTAAGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * * * *
19835348 ATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCACATAACGGTCCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
19835413 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTATGATTTTTAAAACTTTTTACGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
* * * * * * *
19835478 TCGGGATTTTTTAAAATTTTTTTGAAAGTAGTTTTGGCCCGATACTTGGTAGACATGATCCTTGT
196 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * * *
19835543 ATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCTAACTGTACAAGATTTTGTGACCAT
261 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
19835608 TTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
326 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
19835673 ATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGCTTGATGAGGGATA-GGGGCCAATATAAGGGCCA
391 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* *
19835737 AGTACCAGCACCCATCGCACATCATGTGTG--CA-CCCCCCGG-CCCCCCGATCGCCGAAACCCC
456 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCC
19835798 AATGCCGCCGGTCAGGCTCTCCGACGATGCTC-ATGCGATGGTGCCCCGGA-GAAGAAAAATGCG
521 AA--------GTCA-----T-CG-CGATGCTCGA--CGATGGTGCCCC-GACGAAGAAAAATGCG
* * * * * *
19835861 ACA-CAGCACGTACCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCCGGTCCGATCTTAGACT
568 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAGACT
* * * * *
19835925 GGAAATGAACTTCATATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACG
633 GGGAATGAAC-CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* ** * * *
19835990 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGTACAAGCCGGGTATCGGCCTGGTCCCCC
697 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC
19836055 TCT--GTG-TGCT-A------T--CGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAAC
762 TCTGCGTGCTGCTGATCCTGCTGCCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAAC
* * *
19836108 TCCGTATGCCTAAGCCAACCAACG-AA--A-CGA-GC-GA---GCGGGCAGGCACTACGTCG
827 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGGCGGACGGGCGGGCGGGCACTACGCCG
* * *
19836161 GCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGTTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * * *
19836226 ATATATCTTCATGCCAATGCAATTTTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
19836291 ACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
* * * *
19836356 TCGGGATTTTTTTAAATTTTTTTC-GAGGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
196 TCGAGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * * *
19836420 TA-TTTTATTGGCATGCAAAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACAA
260 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * * *
19836484 ATTGAAAAAAGTGTCCCGA-TTCTAAACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATCTC
325 TTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
19836548 AAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
389 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * *
19836613 CAAGTACCAGCACCCATCGCACATCATGTGCTCACACCCCCCCGGCCCCCTCGATCGCC-GAAAC
454 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACC
* * * * *
19836677 CCAAAT-A-C-CG-T-C-CGGCGATGGTGCCCCGGCGAAGAAAAATGCGGGACCAGCACATGCTC
519 CCAAGTCATCGCGATGCTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * * *
19836736 GAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTTGGAATTAACCCTGTA
584 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACCC-GTA
* *
19836801 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCAAC-AAACGAGCGTGCGGGCGCTT
648 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC-ACGAAACGAGCGTGCGGGCGCTC
* * * * ** *
19836865 AGCCGGACAAAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGTATGTTGCTGA
712 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGA
* * ** * * *
19836930 TCCTGCTACCGTAACCCTTGGTCTGGTCTGATCTTAGACTGAGAGTAAACTCCGTATGCCTAAGC
777 TCCTGCTGCCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* *
19836995 CAACCGACGAAACAAGCGTATAGGCGGACGGGCGGGCGGGCTCTACGCCG
842 CAACCGACGAAACGAGCG---AGGCGGACGGGCGGGCGGGCACTACGCCG
* * * * * *
19837045 GCCAGAGAGGCGAGATGCGCAAGCCATGGATTGATAGAGTGGTAGGCGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
19837110 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
*
19837175 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
* * * *
19837240 TCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTTGACGGGATCCTTGT
196 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * * * * * *
19837305 ATTTTTATTGGCATGCACAGAAAAATTTAGGTAAAAACTCTAAGTGTACAAGATTTTGTGACAAA
261 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * * *
19837370 TTGAAAAAAATGTCCCCATTCCAAACACTTTAATGGCTACTAGCAGCAAACCTCTAAAATCTCAA
326 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* **
19837435 ATGCTCTTTATGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
391 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* *
19837500 AGTACCAGCACCCATCGCACATCATGTGCTCACACCCCCCCGGCCCCCTCGATCGCCGGAACCCC
456 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCC
* * * * * *
19837565 AA-T-A-C-CG-T-CT-GACGATGGTGCCCTGGCGAAGAAAAATACGGGACCAGCACACGCCTGA
521 AAGTCATCGCGATGCTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * * ** *
19837623 ACCTAGCATGTGCTGCCGCAACCCTCGGTCCAGTTCGATCTTAGATTGCAAATTAACCCTGTATG
586 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACCC-GTATG
* *
19837688 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGCGCGGGCGCTCAGC
650 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
19837753 CGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGTTGCTGATCC
715 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCC
* *
19837818 TGCTGCCGTAACCCTTGGTCTGGTCCAATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
780 TGCTGCCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
19837883 CCGACGAAATGAGCGTATGGGCGGGCGGGCGGGCAGGCTCTACGCCG
845 CCGACGAAACGAGCG-A--GGCGGACGGGCGGGCGGGCACTACGCCG
* *
19837930 GCCAGAGAGGA-GGGATTGCGCAAGCCGTGGATCGATAGGTGTGGTAGGCGGGTTTAGCCACAAT
1 GCCAGAGA-GACGGGA-TGCGCAAGCCGTGGATCGATAGG-GTGGTAGGTGGGTTTAGGCAC-AT
* ** *
19837994 CTT--TAATTCTATAT-CCAAT-CC-TTTTTCATGGCTTGTAAATTCATACAATGG-CCTTTAAG
62 CTTCATATTTCTGCATGCCAATGCCATTTTT-ATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
19838053 CTGCTTCACGTGAAGTTTCATGGCAAGATGACGTCGTTTTTCTATTTTTCACCGGATTTTTTGAA
126 C--CTTCACGTGAAGTTTCATGGCAAGACGAC-TCG-TTTTCTATTTTTCA--TGA-TTTTTG-A
* *
19838118 AACATTTTTGCGGTTTCAAGA-TTTTTAAATTTTTTTTCGGAAGGAGTTTTGGCCCC-AACTTGG
183 AAC-TTTTTGCGG-TTCGAGATTTTTTAAA-ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
19838181 TAGACGTGATCCTTTTAATTTTTGTTGGCATGTACAAAAAAATTCAAGCTAAAAACTCGAAGTGT
245 TAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTC-AGCTAAAAACTCGAAGTGT
* * *
19838246 AAAAGATTTTGTG--CATTTGAAAAAAGTGTCCCCAGATTTTA-ACACTTTAATGGCTATTGGCA
308 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC--ATTTCAGACACTTTAATGGCTACTGGCA
* * *
19838308 GCAAACCTGTAAAATCGTCAAATGCTCTTTAAGGGGGTGTGGGTTTCTCG-GAGATTGATGAGGT
371 GCAAACCTGTAAAATC-TCAAATGCTCTTTAAGGGGGTGTGAG-TTCTCGAG-GTTTGATGAGGG
* ** * *
19838372 ATAGGGGGCCAATATAAGGGCCAAGTATCATTACCCATCGCATATCATGTGCGTACA-CCCCCCG
433 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
* * *
19838436 GCCCTCCCGATCGTCGGAACCTCAATGCCGTCGGTCAGGTTCTCCAGTGATGCTCCGACGATGCT
498 GCCCCCCCGATCGCCGG------AA--CC--C---CA--------AGTCA---T-CG-CGATGCT
* * *
19838501 CCGACGATGGTGCCCCGACGAAGAAAAAAGCGGCACCAGCACATGCCCGAGCCCAGCATGTCCTA
537 -CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
** * * * * *
19838566 CTACAACCCTCGGTCAGGTCCGATCTTAGACTGGGAATCACCTCCGTATGCTTAGACTGGTAATG
601 CCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAAC-CCGTATGCTTAGACTGGGAATG
* * * * *
19838631 AACTCCGTATGCCTAAGACAACCCATGAAACGAGCGTGCGGGCGCTCAACTGTCCAGAGGGGCGG
665 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * *
19838696 GAAGCGCAAGTCGGGGATCGATCGGGT--CCC-C--C-T-CTGC--A------TG-C-T-A----
730 GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTGCCGTAACCCT
* *
19838739 ---TC--G----ATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGTCGAAAC-A---
795 CGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
*
19838791 A----G-CGGGCGGGCGGGCATTACGCCG
860 AGGCGGACGGGCGGGCGGGCACTACGCCG
* * *
19838815 ACCAGAGAGACGGGATGCGCAAGCCGTGGATCGAAAGGGTGGTAGGTGGGTTTAGGCACATCCTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * **
19838880 ATATTGCTGTATGTGAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * ** *
19838945 ACTTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTTAACAAATTTTGAAACTTTTTGCGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
* *
19839010 TCGAGATTTTTTAGAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGA
196 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * * *
19839075 ATTTTTGTTGGCAAGCACAAAAACATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACTAT
261 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * *
19839140 TTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGACAACAAACCTGTGAAATCTCAA
326 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
19839205 ATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCA
391 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * * *
19839270 AGTACCAGCACCCATCGCACAACATGTGATGAACACCCCCTTCGGCCCCCTCGATCGCTGGAACC
456 AGTACCAGCACCCATCGCACATCATGTG-CGCACACCCCC-CCGGCCCCCCCGATCGCCGGAACC
* *
19839335 CCAATGCCGTCAGTCAGGTTCTCCGACCATGCTCCGACGATGGTGCCCCGACGAAAAAAAATACG
519 CCAA----GTCA-TC--G-----CG---ATGCT-CGACGATGGTGCCCCGACGAAGAAAAATGCG
** * * *
19839400 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGTTGCAACCCCCAGTCCGG-TCTGGTCTTAGAC
568 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTC-GATCTTAGAC
* *
19839464 TGGGAATGAACTCCGTATGCTTAGACCT-GGAATGAACTTCGTATGCCTAAGTCAACCCACAAAA
632 TGGGAATGAAC-CCGTATGCTTAGA-CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * ** * * * *
19839528 CGAGCATACGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCTGGAGATTGGTCGTGTCCC
695 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCC
** * * * * * **
19839593 CCTCAACATGCTGCTGATCCTGCTACCGCAACCCTTGGTCTGATCTGATCTTAGACTGGGAATGA
760 CCTCTGCGTGCTGCTGATCCTGCTGCCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGA
* * **
19839658 ACTCCGTATGCCTAAGCCAACCGACAAAACGAGCG-GGCGGGCGAACGGGCGGGCACTACGCCG
825 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGGCGGACGGGCGGGCGGGCACTACGCCG
* * * *
19839721 ACCAGAGAGACGGGATGCGCAGGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATATTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
19839786 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * * **
19839851 ACGTGAAGTTTCATGGTAAGACGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTGCAAT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
* *
19839916 TCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACATGGTCA-ACGTGATCCTTG
196 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT-AGACGTGATCCTTG
* * * *
19839980 TATTTTTGTTGGTATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGACTA
260 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * *
19840045 TTTGAGAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTGAAATCTCA
325 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * * * *
19840110 AATACTCTTTAAGGGGGTGTGAGTTCTCCAAGTTTGATGAGGGATAAGGGGACAATATAAGAGCC
390 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
19840175 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCTGGCCCCCCCGATCGCTGGAACC
455 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CCGGCCCCCCCGATCGCCGGAACC
* * * *
19840240 CTAATGCTGTCAGTCAGGTTCTCCAGTGATACTCCGACGATGGTGCCCCGACAAAGAAAAATACG
519 CCAA----GTCA-TC--G-----C---GATGCT-CGACGATGGTGCCCCGACGAAGAAAAATGCG
* * * * ***
19840305 GCACCAGTACATGCCCGAGCCCAACATGAGTTATTGCAA-CC-C--T-C-G---G-TC-----C-
568 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAGACT
* *
19840354 --G-AT----CCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAATGA
633 GGGAATGAACCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * *
19840410 GCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATACGCAAGTCGAGGATCGG-CTGGGTCCCCC
698 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCC
* * ** * * **
19840474 TCTGTGTGCTG-TCGATCCTACTGAGGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAA
762 TCTGCGTGCTGCT-GATCCTGCTGCCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAA
* * ** * *
19840538 CTCTGTATGCCTAAGCCAACCGATGAAATTAGCG-GGCGCG-TGGGCGGGCGGGCACTACGTCG
826 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGGCG-GACGGGCGGGCGGGCACTACGCCG
*
19840600 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
19840665 ATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* ** ** * * *
19840730 ACGTGACGTTAAATGGCAAGTTGACTCATGTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
* *** ** *
19840795 TCGAGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGCTTGAAACTTGGTAGACAAGATCATTGT
196 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * * * *
19840860 ATTTTTTTTGTCATGCACAAAAAAAATCAGCTAACAACTCGAAGTGTACTAGATTTTGTGACCAT
261 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * *
19840925 TTGAAAAAAGTGTCCCCATTTTATACACTTTAATGGCGACTGGCAGCAAACC-GATAAAATCTCA
326 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG-TAAAATCTCA
* * *
19840989 AATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAAGGATAAGGGGCCAATATAAGGGCC
390 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
19841054 AAGTACCAGCACCCATCACACATCATGTGCACACA-CCCCCCGGCCCCCCCGATCGCTGGAACCC
455 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCC
*
19841118 TAATGCCGTCGGTCAGGTTCTCCGGCG-TCGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCG
520 CAA--------GTCA-----T-C-GCGAT-GC-TCGACGATGGTGCCCCGACGAAGAAAAATGCG
* * * ** *
19841182 ACACCAACACATGCCTGAGCCCAGCATGTGCTATCGTAA----C--T-C---TCGA---T---CT
568 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAGACT
* * * *
19841231 --G-AT----CTG-A-GCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCCA-AAAATGA
633 GGGAATGAACCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* ** * * * * * * *
19841286 GCGTGCGGACGCTCAATCGGCCAGAGTGGCGAGATGCGCAAGTCAGGGATCGGCCGGGTCTCGCT
698 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCT
* * * ** ** ** **
19841351 CTGCGTACTG-TCAATCCTACTGCCACAACCCTCAATCTATTCTGATCTTAGACTGGGAATGAAC
763 CTGCGTGCTGCT-GATCCTGCTGCCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAAC
* * * * *
19841415 TCTGTATGCCTAAGCCAACTGACGAAACGA--G-TG-GG--TGG-GGGC--GCTCTACGCCG
827 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGGCGGACGGGCGGGCGGGCACTACGCCG
* *
19841468 GCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
** *
19841533 ATATTTCTATATGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
*
19841598 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTTACGG
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA-CTTTTTGCGG
* * * *
19841663 TTCGGGACTTTTTTAAAATTTTTTCGGGAGGAGTTTTGGCCCCAAACTTGGTAGACATCATCCTT
195 TTCGAGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * * *
19841728 GTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAAGTAGAAGTGTACAAGATTTT-TGACC
259 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * * * *
19841792 ATTTGAAAAAATTATCCCCATTCCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTT
324 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * *
19841857 AAATACTCTTTAAGGGGGTGTGAGTTATCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGC
389 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * **
19841922 CAAGTACCAGCACCCATTGCACATCATGTGCACACACCCCCCCGGCCCCCCCGAACGCCAAAACC
454 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACC
* ** *
19841987 CCAATGCCGCCGGTCAAGTTCTCCGGCTATGCTCTGACGATGGTGCCCCGGTGAAGAAAAATACG
519 CCAA--------GTC-A----T-C-GCGATGCTC-GACGATGGTGCCCCGACGAAGAAAAATGCG
* * * * * *
19842052 GCACTAGCACATGCCCGAGACCAGCATGTGCTGTCACAGCCCTTGGTCCGG-TCTGATCTTAGAC
568 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTC-GATCTTAGAC
19842116 TGGGAATGAACTCCGTATGC
632 TGGGAATGAAC-CCGTATGC
19842136 CTAAGTGAAC
Statistics
Matches: 9867, Mismatches: 1147, Indels: 707
0.84 0.10 0.06
Matches are distributed among these distances:
857 1 0.00
858 2 0.00
859 28 0.00
860 169 0.02
861 6 0.00
862 3 0.00
863 6 0.00
864 3 0.00
865 3 0.00
866 1 0.00
867 233 0.02
868 300 0.03
869 176 0.02
870 218 0.02
871 4 0.00
872 64 0.01
873 5 0.00
874 6 0.00
875 64 0.01
876 216 0.02
877 420 0.04
878 361 0.04
879 645 0.07
880 16 0.00
881 26 0.00
882 17 0.00
883 64 0.01
884 304 0.03
885 664 0.07
886 76 0.01
887 48 0.00
888 7 0.00
889 4 0.00
890 10 0.00
891 5 0.00
892 57 0.01
893 140 0.01
894 91 0.01
895 69 0.01
896 8 0.00
897 356 0.04
898 273 0.03
899 355 0.04
900 455 0.05
901 622 0.06
902 363 0.04
903 283 0.03
904 336 0.03
905 288 0.03
906 514 0.05
907 14 0.00
908 3 0.00
909 49 0.00
910 409 0.04
911 2 0.00
912 7 0.00
913 4 0.00
914 33 0.00
915 284 0.03
916 463 0.05
917 4 0.00
919 1 0.00
920 4 0.00
921 5 0.00
922 2 0.00
923 1 0.00
924 2 0.00
925 2 0.00
926 5 0.00
927 1 0.00
928 185 0.02
929 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCC
AAGTCATCGCGATGCTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACCCGTATGC
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCT
GCTGCCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGAGGCGGACGGGCGGGCGGGCACTACGCCG
Found at i:19838498 original size:11 final size:11
Alignment explanation
Indices: 19838484--19838509 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
19838474 GTTCTCCAGT
19838484 GATGCTCCGAC
1 GATGCTCCGAC
19838495 GATGCTCCGAC
1 GATGCTCCGAC
19838506 GATG
1 GATG
19838510 GTGCCCCGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
GATGCTCCGAC
Found at i:19838619 original size:26 final size:26
Alignment explanation
Indices: 19838590--19838642 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19838580 CAGGTCCGAT
*
19838590 CTTAGACTGGGAATCACCTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
* *
19838616 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
19838642 C
1 C
19838643 CTAAGACAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:19839486 original size:26 final size:26
Alignment explanation
Indices: 19839457--19839509 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19839447 CCGGTCTGGT
19839457 CTTAGA-CTGGGAATGAACTCCGTATG
1 CTTAGACCT-GGAATGAACTCCGTATG
*
19839483 CTTAGACCTGGAATGAACTTCGTATG
1 CTTAGACCTGGAATGAACTCCGTATG
19839509 C
1 C
19839510 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACCTGGAATGAACTCCGTATG
Found at i:19844370 original size:720 final size:715
Alignment explanation
Indices: 19842986--19845786 Score: 3972
Period size: 716 Copynumber: 3.9 Consensus size: 715
19842976 GGGCATAAGT
*
19842986 GAGAGAACGGGATGCGC-AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATA
1 GAGAG-ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
19843050 TTTCTGCGTGCCATATG-CATTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
65 TTTCTACGTGCCA-ATGCCA-TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
*
19843114 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAATTTTT-GCGATTTTCAAAACTTTTTACAGT
128 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCT-ATTTTTCACGATTTTCAAAACTTTTTACAGT
* * *
19843178 TC-GAGATTTTTTAAAATTTTTTTGGAAAGAGTTTTTGCCGCAAACTTGGTAGACGTGATCCTTT
192 TCAG-GATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
*
19843242 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
256 TATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCA
* *
19843307 TTTGAAAAAAGTGTCCCCATTTTAGACAATTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
320 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
19843372 AATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGAC
385 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
19843437 AAGTACCAGCACCTACCACACATCATGTGCGCACACCCGCCCCCGGCCCCCCGAT-GACCGGAAC
450 AAGTACCAGCACCCATCACACATCATGTGCGCACACCCG-CCCCGACCCCCCGATCG-CCGGAAC
**
19843501 CCCAATACCGCCAGTCAGGTTCTCTAACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
513 CCCAATACCGCCAGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
* * ** * *
19843566 AGCACCAGCACATGTTCGAGCCCAGCATGTGCTGCAGCAACGGTCGGTCCGGTCCGATCTTAGAC
578 GGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCAGCAACCCTCGGTCCGATCCAATCTTAGAC
19843631 TGGGAATGAACTCCATATGCCTAAGCCAAACGACAAAACGAACGGGCAGGCGGGCGGGCGGGCAC
643 TGGGAATGAACTCCATATGCCTAAGCCAAACGACAAAACG-A--GGCAGGCGGGCGGGCGGGCAC
* *
19843696 TACGTTGACCA
705 TACGCTGGCCA
* *
19843707 GAGAGACGGGATGCGCAAACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATGT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
** *
19843772 TTCTGTGTGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
66 TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* *
19843837 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAA-TTTTTACGGTTCA
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTCAAAACTTTTTACAGTTCA
* * * *
19843901 GGATTTTTTTAAAATTTTTTTGAAAAGAGTTTTGGCCCCAAACTTGGTAGACATGA-CTGTTGCA
195 GGA-TTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATC-CTTGTA
* * * * *
19843965 TTTTTTTGGCTTGCATAAAAAAATTCGGCTAAAAGCTCGAAATGTACAAGATTTTGTGAGCATTT
258 TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTT
* *
19844030 GAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAAT
323 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
*
19844095 GCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
388 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * * * *
19844160 TACCAGCACCCATCGCCCATCATGTGTGCACACCCGGCCCCAACTCCCCCTATCGTCGGAACCCC
453 TACCAGCACCCATCACACATCATGTGCGCACACCC-GCCCCGAC-CCCCCGATCGCCGGAACCCC
* ** * *
19844225 AATGCCGCCAGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCTCGGCGAAGAAAAATGCGGC
516 AATACCGCCAGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
* * *
19844290 ACCAGCACATGCTCAAGCCCAGCATGTGCTCCAGCAACCCTCGGTCC-ATCCGATCTTAGACTGG
581 ACCAGCACATGCTCGAGCCCAGCATGTGCTGCAGCAACCCTCGGTCCGATCCAATCTTAGACTGG
* * ** *
19844354 GAATGAACTCCATATGCCTAAGCCAATCGA-AAAA-GAGAGCGGGCGGGCGGGTC-AACACTATG
646 GAATGAACTCCATATGCCTAAGCCAAACGACAAAACGAG-GCAGGCGGGCGGG-CGGGCACTACG
*
19844416 CCGGCCA
709 CTGGCCA
* * *
19844423 GAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAAGTGTGTTTAGGCACATCTTCATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
** *
19844488 TTCTATTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGT
66 TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* *
19844553 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCAGTTCAG
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAGTTCAG
* * *
19844618 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTATTT
196 GATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TT
* *
19844683 TTTTTGGCATGCACAAAAACAA-TCAACTAAAAACTC-AAAGTGTACAGGATTTTGTGACCATTT
260 TTTTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAA-TGTACAAGATTTTGTGACCATTT
19844746 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
323 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
19844811 GCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAG
388 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* **
19844876 TACCAGCACCGATCACACATCATGTGCGCACACCCCCCGACCCCGACCCCCCCGATCATCGGAAC
453 TACCAGCACCCATCACACATCATGTGCGCACA---CCCG-CCCCGA-CCCCCCGATCGCCGGAAC
* * **
19844941 CCCAATACCGCCAGTCAAGTTCTCCGGA-GATGCTCTGACGATGGTGCCTTGACGAAGAAAAATG
513 CCCAATACCGCCAGTCAGGTTCTCC-GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
* * * *
19845005 TGGCACCAGCACATGCTGGAGCCCAGCATGTGCTGCAGCAACCCTCGGTCTGATCCAATTTTAGA
577 CGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCAGCAACCCTCGGTCCGATCCAATCTTAGA
* **
19845070 CTGGGAATGAACTCCGTATGCCTAAGCCAGCCGACAAAACGA---A--CGGGCGGGCGGGCACTA
642 CTGGGAATGAACTCCATATGCCTAAGCCAAACGACAAAACGAGGCAGGCGGGCGGGCGGGCACTA
19845130 CGCTGGCCA
707 CGCTGGCCA
* * *
19845139 GAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGATAGGTGGG-TTAGGCACATCTTCATCT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * *
19845203 TTCTACATGCCAATGTCATTTTTATGGCTTGT-AATTCATACAATGGTTCCTTAAGCCTTCACGT
66 TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * * *
19845267 GAAGTTTCATGGTAAGATGACTCGTTTT-TATTTTTTACGATTTTCAAAACTTTTTACGGTTCGG
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAGTTCAG
* *
19845331 GATTTTTTAAAATTTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
196 GATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * *
19845396 TCATTGGC-TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTGTGGCCA-TTGA
261 T-TTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGA
* *
19845458 AAAAAGTGTCACCATTTCAGACACTTT-ATGGCTACTGGCCGCAAACCTGTAAAATC-CAAATGC
325 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
19845521 T-TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTA
390 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * *
19845585 CTATGCACCCATCGCACATCATAGTGCGCACACCC-CCTCGGCCCCCTCGATCGCCGGAACCCCA
455 CCA-GCACCCATCACACATCAT-GTGCGCACACCCGCCCCGACCCCC-CGATCGCCGGAACCCCA
* ** * * *
19845649 ATGCCATC-GATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGAC
517 ATACCGCCAG-TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
* * *
19845713 ACCAGCACATGCCCGACCCCAGCATGTGCTGTC-GCAACCCTCGGTCCGATTCAATCTTAGACTG
581 ACCAGCACATGCTCGAGCCCAGCATGTGCTG-CAGCAACCCTCGGTCCGATCCAATCTTAGACTG
19845777 GGAATGAACT
645 GGAATGAACT
19845787 TCGTACGCCT
Statistics
Matches: 1874, Mismatches: 170, Indels: 89
0.88 0.08 0.04
Matches are distributed among these distances:
703 8 0.00
704 133 0.07
705 1 0.00
706 3 0.00
707 62 0.03
708 24 0.01
709 37 0.02
710 30 0.02
711 11 0.01
712 35 0.02
713 97 0.05
714 56 0.03
715 110 0.06
716 465 0.25
717 4 0.00
718 2 0.00
719 135 0.07
720 411 0.22
721 247 0.13
722 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (715 bp):
GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAGTTCAG
GATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAA
AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
CAGCACCCATCACACATCATGTGCGCACACCCGCCCCGACCCCCCGATCGCCGGAACCCCAATAC
CGCCAGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
CACATGCTCGAGCCCAGCATGTGCTGCAGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATG
AACTCCATATGCCTAAGCCAAACGACAAAACGAGGCAGGCGGGCGGGCGGGCACTACGCTGGCCA
Found at i:19846578 original size:25 final size:26
Alignment explanation
Indices: 19846539--19846590 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
19846529 CTGGTTTGAT
*
19846539 CTTAGACTGGGAATGAAGTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
19846565 CTTAGA-TTGGAATGACCTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
19846590 C
1 C
19846591 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:19846980 original size:159 final size:158
Alignment explanation
Indices: 19846565--19846981 Score: 462
Period size: 159 Copynumber: 2.6 Consensus size: 158
19846555 AGTCTGTATG
* * * * * *
19846565 CTTAGA-TTGGAATGACCTCTGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCAGGCACTCAGC
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCGGGCGGGCACT-AGC
* * * * *
19846629 CGACCAAAGGGGCGGGATGCGCAAGCCGTGAATCAGCCGGGTCCCTCTTTGCGTGCTGTCGATCC
65 CGGCCAAAGGGGCAGGATGCGCAAGCCGTGGATCGGCCGGGTCCCTCTCTGCGTGCTGTCGATCC
* * **
19846694 TGCTGCCACAACCCTCGGTCTAGTCTGAT
130 TGCTACCACAACCCTCGGTCCAGTCCAAT
* * * ** *
19846723 CTTAGACTAGGAATGAACTCCGTATACCTAAGCCAACTGACA-AAATAAGCGGGCGGGCACTACA
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGA-AGAAACGAGCGGGCGGGCACTA-G
* * * *
19846787 CCGGCTAGAGGGGCAGAATGCGCAAGCCGGGGATCGGCCGGGT-CCTCCTCTGCGTGCTGTCGAT
64 CCGGCCAAAGGGGCAGGATGCGCAAGCCGTGGATCGGCCGGGTCCCT-CTCTGCGTGCTGTCGAT
*
19846851 CCTGCTACCACAACCCTTGGTCCAGTCCAAT
128 CCTGCTACCACAACCCTCGGTCCAGTCCAAT
* * *
19846882 CTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGCGGGTGGGCACTATGC
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCGGGCGGGCACTA-GC
* * * **
19846947 CGGCCAAAGAGACCGGATGCGCAAGATGTGGATCG
65 CGGCCAAAGGGGCAGGATGCGCAAGCCGTGGATCG
19846982 ATAGGGTGGT
Statistics
Matches: 209, Mismatches: 45, Indels: 9
0.79 0.17 0.03
Matches are distributed among these distances:
158 10 0.05
159 198 0.95
160 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCGGGCGGGCACTAGCC
GGCCAAAGGGGCAGGATGCGCAAGCCGTGGATCGGCCGGGTCCCTCTCTGCGTGCTGTCGATCCT
GCTACCACAACCCTCGGTCCAGTCCAAT
Found at i:19847637 original size:26 final size:26
Alignment explanation
Indices: 19847599--19847651 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19847589 CTGGTCTGAT
* *
19847599 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19847625 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19847651 C
1 C
19847652 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19848535 original size:26 final size:26
Alignment explanation
Indices: 19848506--19848558 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19848496 TCGGTCCGAT
*
19848506 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19848532 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19848558 C
1 C
19848559 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19849438 original size:869 final size:875
Alignment explanation
Indices: 19846930--19853859 Score: 7711
Period size: 869 Copynumber: 7.8 Consensus size: 875
19846920 GATGAAACGA
* * * * **
19846930 GCGGGTGGGCACTATGCCGGCCAAAGAGACCGGATGCGCAAGATGTGGATCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
19846995 TGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATAC
66 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
19847060 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCATTTTCTATTTTTCATGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * *
19847125 TTTCCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCACAAACA
196 TTTCAAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* *
19847190 TGGTAGATGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
260 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
19847255 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGACTACTGGCAG
325 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * *
19847320 TAAACCTGTAAAATTTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGACGGATAG
390 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
19847385 GGGGCCAATATAAGGACCAAGTACCAGCACCCATCACACATCATGTGCGCACACACCCCCGACCC
455 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCG-GCC
* * *
19847450 CCCCGATCGTCGGTACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGCTTTGG
518 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCT----C-A------GG
** ** * * *
19847515 CGATGGTG-CCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAACATGTGCTACCAC
572 CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * * * *
19847579 AACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACT
637 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* *
19847644 CCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGCTCAACCGGCCAGACGGTCGGGATG
702 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA-C-G-C---C-GT-GGGAT-
** * * *
19847709 CACAAGCCGGGGATCGGTCGGGTCCCCTTCTGTGTGCTACCGATCCTACTACCGCAACCCTCAGT
758 ------CC-GGGA----TCGGGTCCCC-TCT-ACTG-T--CGA---TGCTGCCGCAACCCTCGGT
* * * *
19847774 CCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACAAGCAGGCA
804 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCA-GC-
*
19847839 GGCGAGCGG
867 GGCGGGCGG
** * * * *
19847848 GCGGGTTGGCACTACGTCGGTCAGAGAGACGGGATGCGCAAGTCGTCGATCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
19847913 TGGGTTTAGGCACATCTTCACATTTCTGCGTGCCAATGCCATTTTTATGGCTTCTAAATTCAAAC
66 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
19847978 AATTGTCCCTTAAGCCTTCA-GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * * *
19848042 TTTTGAAACTTTTTATGGTTCGAGATTTTTAAAAATTTTTTCGGAATGAGTTTTGGCCCCAAACT
196 TTTCAAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* *
19848107 TGGTAGACGTGATCATTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTG
260 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
19848172 TACACGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
325 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
19848237 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAG
390 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * ** *
19848302 GGGGCCAATATAAGGGCCATGTACCAGTAGTCATCGCACATCATGT-CTGCACACCCCCTCAGCC
455 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-GCACACCCCC-CGGCC
* * * * * ** *
19848366 CCTTCGATCGTTGGAAACCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTACC
518 CC-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAGGCGATGGTGCC
* * * * *
19848431 CCGACGAAGAAAAATGA-GGCACCAGGACCTGCCCGAGCCCAACATGTG-TGGCTGCAACCCTTG
582 CCGACGAAGAAAAAT-ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-GCCGCAACCCTCG
* * *
19848494 GTTCGGTCCGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGC
645 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
*
19848559 CTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTC-A-GCCG-GGGAT-C-GG-TCGGGTCCCC-
710 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACGCCGTGGGATCCGGGATCGGGTCCCCT
* *
19848617 CT-CTG-CG-TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
775 CTACTGTCGATGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
*
19848679 CTTAAGCCAACCGACGAAACGAGCGAGCGGACGGGCGG
840 CCTAAGCCAACCGACGAAACGAGC-AGCGG-CGGGCGG
* * * * *
19848717 TCGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGACCGATAGGGTGGTATG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
19848782 TGGGTTTAGGCACATCTTCATCTTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
66 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * * *
19848847 AATGGTTCCTTAGGCATTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
*
19848912 TTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTC-GAAGGAGTTTTGGCCCCAAAC
196 TTTCAAAACTTTTTACGGTTC-GGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAAC
*
19848976 TTGGTAGACGTGATCCTTGTATTTTCGTTGGC-TGCACAAAAAAATTCAGCTAAAAACTCGAAGT
259 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * * *
19849040 GTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCACCATTTTAGACACTTTAATGGCCACTGGCA
324 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
19849105 GCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
389 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
19849170 GGGGGCCAATATATGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCC
454 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCC
* * * * *
19849235 CCCTCGAACGCCGGAACCCCAATGCCATCGATCAGGTTCTCCGACGATGCTCAGGCGATGGTGCC
518 CCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAGGCGATGGTGCC
*
19849300 CCGACGAAGAAAAATACGGCGCCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
582 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * *
19849365 CCGGTCCGATCTTAGGCTAGGAATGAACTCCGTATGCTTAGACTGTGAATGAACTCTGTATGCCT
647 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
19849430 AAGTCAACCCGA-AAAACGAGCGTGCGGGCGTTCAACCGGCTAGAGGGGTGGGATGCGCAACCCG
712 AAGTCAACCC-ACGAAACGAGCGTGCGGGCGCTCAA-C-GC------CGTGGGAT-------CC-
* *
19849494 AGGGTCGATCGGGTGCCCCTCTACGTGCTACCGATCTTGCTGCCGCAACCCTCAGTCCGATCTGA
760 --GG--GATCGGGT-CCCCTCTAC-TG-T--CGA---TGCTGCCGCAACCCTCGGTCCGGTCTGA
* * * * *
19849559 TCTTAGACTAGGAATGAACTCCGTATGCCGAAGCCAACTGATGAAACGAGC-G-GGCGGGCAG
813 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGCGGCGGGCGG
* * * * *
19849620 ACGGGCAGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGGTCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * **
19849685 TGCGTTTAGGCACATCTTTATATTTCTGTGTGCCAACACCATTTTTATGGCTTGTAAATTCATAC
66 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
19849750 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTGTTTTTCACGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* *
19849815 TTTCAAAATTTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAAC
196 TTTCAAAA-CTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
19849880 TTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAGAATTCAGCTAAAAACTCGAAGT
259 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
19849945 GTACAAGATTTTGTGACCATTGGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
324 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
19850010 GCAAACTTGTAAAATCTCAATTGCACTTTAAGGGGGTGTGAGTTCTAGAGGTTTGA-GAGGGATA
389 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
19850074 GGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
454 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* * * * * ** * *
19850139 CCCTGATCATCGAAAACCCAATGCCGCCGGTCAGGTTCTCTGATGATGCTCCGGCGATGGTGCCT
519 CCC-GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAGGCGATGGTGCCC
* * * ** *
19850204 CGGCGAAGAAAAATACGGCACCTGCACATGCCAGAGCCCAGCATGTGCCACCGTAACCCTCGGTC
583 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * * **
19850269 CGGTCCGATCTTAGA-TTGGAATGAACTCCGTATGCTTAGACTGGGAAAGATCTCTATATGCCTA
648 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
19850333 AGTCAACCCACGAAATGAGCGTGCAGGCGTTCAACCGGCCAAAGGGGTGGGATGCGTAAGCCGGG
713 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA-C-GCC------GTGGGA----T---CC-GG
* * * * * * ** * **
19850398 GATCGACCTGGTCCCCCTCTACGTACTATCGATCCTGCTGTCGTAAACATTGGTCTTGCCCAATC
762 GATCG----GGT--CCC-CT-C-TACTGTCGA---TGCTGCCGCAACCCTCGGTCCGGTCTGATC
* * * *
19850463 TTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACAGAC-AAA--A-C-G-AGCGGACGG
815 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGCGGCGGGCGG
* * * * * *
19850518 GCGAGCGAGCACTATGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGAGTGTTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
19850583 TGGACTTAAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT-
66 TGG-GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
19850647 CAATGGTTCCTTAAGCCTTCAACGTCGAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCAC
130 CAATGGTCCCTTAAGCCTTC-ACGT-GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * * *
19850712 GATTTTGAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGAAAGGATTTTTGGCCCCAA
193 GATTTTCAAAACTTTTTACGG-TTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* *
19850777 ACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAA
257 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
** *
19850842 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTAGCCATTTTAGACACTTTAATGGCTACTGG
322 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
19850907 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCAAGGTTTGATGAGGGA
387 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
19850972 TAGGGGGCCTATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCGCACCCCCCGAC
452 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * * * * *
19851037 CCCCCGATCGCCGAAACGCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTGGCGATGGTGCT
517 CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAGGCGATGGTGCC
* ** * ** *
19851102 CGGGTGAAGAAAAATACGGCACCAGCACATGCCTGAGCCC-GACATGTGCTATCACAACCCTCGG
582 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG-CATGTGCTGCCGCAACCCTCGG
* * * * *
19851166 TCTGGTTCGATCTTACACTGGGAATGAACTCGGTATGCTTAGACTGGGAATGAACTTCGTATGCC
646 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
19851231 TAAGTCAACCCACGAAACGAACGTGCAGGCACTCAGCCGGCCAGAAGGGTGGGACGCGCAAGTCG
711 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-AC-GCC------GT--G--G-G--A-TC-
* * * * * ** * *
19851296 GGGATCGATCGGGTCCACCTCTACGTGTTGTCGATCCTACTATAGTAACCCTCAATCTGATCTGA
759 CGG---GATCGGGTCC-CCTCTAC----TGTCGATGCTGC---CGCAACCCTCGGTCCGGTCTGA
* **
19851361 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATTA--A--------CGG
813 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGCGGCGGGCGG
* ** *
19851414 GCGGACGGGCACTACGGTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
19851479 TGGGTTTAGGCACATCTTCAT-TTCTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTTATA
66 TGGGTTTAGGCACATCTTCATATT-TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
19851543 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT--C-A
130 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * **
19851605 ---T---AA---TTT----TT--G-------AAACTTTTTTCAGAAGGTGTTTTGGGACCAAACT
195 TTTTCAAAACTTTTTACGGTTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
** *
19851648 TGGTAGACGTGATCCTTGTATTTTTGTTGGCACACACAAAAAAATTTAGCTAAAAACTCGAAGTG
260 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
19851713 TACGAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAG
325 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
19851778 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
390 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
19851843 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCATATCATGTGCGCACACCTCCCCCGACC
455 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCCCCG-GC
* * * * * * * *
19851908 CCCCCGATCGTCGAAACCCTAATACCGTCGGTCAAGTTCTCCGGTGACGCTCTGACGATGGTGCC
517 CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAGGCGATGGTGCC
* * * ** * *
19851973 TCGACGAAGAAAAATACGACACCAGCACATGCCTGAGCCCAGCATGTGCTATCGCAACCCTTGAT
582 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * * *
19852038 CCGATCTGATCTTAGACTGGGAATGAATTTCGTATGCTTAGACTGGGAATGAACTCCGTATGACT
647 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* ** * * *
19852103 AAGTCAATCCATAAAATGAGCGTGCAGGCGCTCAACCGACCAGAGGGGCGAGATGCATAAGCCGG
712 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA-CG-CC------GTG-G--G-AT---CC--
* * * * * * *
19852168 GGATCGATCGGGTCCCTCTTTGCATGCTGCCGATCCTGCTGCTGCAACGCTCGATCCAGTCCGAT
760 GG---GATCGGGTCCC-C--T-C-TACTGTCGA---TGCTGCCGCAACCCTCGGTCCGGTCTGAT
* * * * *
19852233 CTTAGACTGGGAATTAACTCCGTATGCCTAAGACAACCGAGGAAACGAAC-G-GGCGGCCGG
814 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGCGGCGGGCGG
* * *
19852293 GCAGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * * * * * *
19852358 TTGCTTTAGGTACATCTTCATATTTCTGTGTTCCAATACCATTTTTATGGCTTGTAAATTAAAAC
66 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* **
19852423 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATTAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* **
19852488 TTTCAAAA-TTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACT
196 TTTCAAAACTTTTTACGG-TTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
*
19852552 TGGTAGACGTGATCCTTGTATTTTGGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
260 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
19852617 TACAGGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAG
325 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * * *
19852682 CAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTCTGAGTTCTCAAGGTTTGATTAGGGATAA
390 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
19852747 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCCTGTGCGTACACCCCCCCGGCCC
455 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CC
19852812 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTC---CGA--------
518 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAGGCGATGGTGCCC
* *
19852866 -G--GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTC
583 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * *
19852928 CGATCTGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTA
648 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
19852993 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGCCAGAGGGGCGGGATGCGCAAGCCGAGG
713 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-ACGCC------GTGGGAT-------CCG-GG
* * * * *
19853058 ATTAACCAGGTCCCCCTCTATGTGCTGCAGATTCTGCTACGCAACCCTCGATCCGATCTGATCTT
763 A-T---CGGGT-CCCCTCTA-CTG-T-C-GATGCTGC--CGCAACCCTCGGTCCGGTCTGATCTT
*
19853123 AGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-G-GGCGGGCGG
817 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGCGGCGGGCGG
* * *
19853180 GCGGGTGGGCACTACGCCGGCTAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * * *
19853245 TGTGTTTAGGCACATCTTTATATTTCTACATGCCAATGCAATTTTTATGGCTTGTAAATTCATAC
66 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
19853310 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCACAAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** *
19853375 TTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
196 TTTCAAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
19853440 TGGTAGATGTGATCCTTGTATTTTTTTTGACATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
260 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * *
19853505 TACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAAAGGCTACTGACAG
325 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
19853570 CAAACCTGTAAATTCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAG
390 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
19853635 GGGGCCAATATAAGTGCCAAGTACGAGCACCC-TCCGTACATCATGTGCGCACACCCCCCGGCCC
455 GGGGCCAATATAAGGGCCAAGTACCAGCACCCAT-CGCACATCATGTGCGCACACCCCCCGGCCC
* * *
19853699 CCCGATCATCGGAACCCCAATACCG-CTAGTCAGGTTCTCCGGCGATGCTCCA-GCGATGGTG-C
519 CCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCT-CAGGCGATGGTGCC
* * * * *
19853761 CCGACAAAGAAAAATGCGGCACCAACACATGCCAGAGCCCAGCATGTGCTGCTGCAACCCTCGGT
582 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* *
19853826 CTGGTCCGATCTTAGATTGGGAATGAACTCCGTA
647 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
19853860 AGCCTAAACC
Statistics
Matches: 5215, Mismatches: 596, Indels: 421
0.84 0.10 0.07
Matches are distributed among these distances:
867 1 0.00
868 263 0.05
869 618 0.12
870 133 0.03
871 290 0.06
872 1 0.00
873 5 0.00
874 5 0.00
875 3 0.00
877 4 0.00
879 175 0.03
880 7 0.00
881 10 0.00
882 4 0.00
884 5 0.00
885 14 0.00
886 51 0.01
887 266 0.05
888 299 0.06
889 150 0.03
890 3 0.00
891 2 0.00
892 2 0.00
894 38 0.01
895 64 0.01
896 92 0.02
897 8 0.00
898 97 0.02
899 486 0.09
900 267 0.05
901 10 0.00
902 152 0.03
903 386 0.07
904 412 0.08
905 146 0.03
906 13 0.00
907 214 0.04
913 1 0.00
916 9 0.00
917 375 0.07
918 134 0.03
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (875 bp):
GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
TTTCAAAACTTTTTACGGTTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAGGCGATGGTGCCCCGA
CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGCGTGCGGGCGCTCAACGCCGTGGGATCCGGGATCGGGTCCCCTCTACTG
TCGATGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACCGACGAAACGAGCAGCGGCGGGCGG
Found at i:19850818 original size:899 final size:897
Alignment explanation
Indices: 19848624--19853859 Score: 6614
Period size: 899 Copynumber: 5.9 Consensus size: 897
19848614 CCCCTCTGCG
* * *
19848624 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCT-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
19848689 CCGACGAAACGAGCGAGCGGACGGGCGGTCGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGC
65 CAGACGAAACGAGC--G-GG-C--G-GG-CGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGC
* * * *
19848754 GCAAGCCGTGGACCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATCTTTCTACGTGCCAAT
122 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAAT
* * *
19848819 GCCATTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAGGCATTCACGTGAAGTTTCATGGCA
187 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
19848884 AGATGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTGCGGTTC-AGGATTTTTTAAAAT
252 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA-GATTTTTTAAAA-
*
19848948 TTTTTTCG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTCGTTGGC-TGC
315 TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
19849011 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCAC
380 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
19849076 CATTTTAGACACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGG
445 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
19849141 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACTAGCACCCATC
510 TGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * *
19849206 GCACATCATGTGCGCACACCCCCTCGGCCCCCTCGAACGCCGGAACCCCAATGCCATCGATCAGG
575 GCACATCATGTGCGCACACCCCC-CGGCCCCCCCGATCGTCGGAAACCCAATGCCGTCGGTCAGG
* *
19849271 TTCTCCGACGATGCTCAGGCGATGGTGCCCCGACGAAGAAAAATACGGCGCCAGCACATGCCCGA
639 TTCTCCGACGATGCTCCGGCGATGGTG-CCCGACGAAGAAAAATACGGCACCAGCACATGCCCGA
* * *
19849336 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGGCTAGGAATGAACTCCGTATG
703 GCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
19849401 CTTAGACTGTGAATGAACTCTGTATGCCTAAGTCAACCCGA-AAAACGAGCGTGCGGGCGTTCAA
768 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC-ACGAAACGAGCGTGCGGGCGCTCAA
* * * *
19849465 CCGGCTAGAGGGGTGGGATGCGCAACCCGAGGG-TCGATCGGGTGCCCCTCTACGTGCTACCGAT
832 CCGGCCAGAGGGGTGGGATGCGCAAGCCG-GGGATCGATCGGGTCCCCCTCTACGTGCTGCCGAT
*
19849529 CT
896 CC
* * *
19849531 TGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCGAAGCCAA
1 TGCTGCCGCAACCCTCAGTCTG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
19849596 CTGATGAAACGAGCGGGCGGGCAGACGG-GCAGGCACTATGCCGACCAGAGAGACGGGATGCGCA
65 CAGACGAAACGAGCGGGCGGGC-G--GGCG-A-GCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * **
19849660 AGCCGTGGGTCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTTATATTTCTGTGTGCCAACACC
125 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
19849725 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
190 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
19849790 TGACTCGTTTTTTGTTTTTCACGATTTTCAAAATTTTTTTACGGTTCGAGATTTTTTAAAATTTT
255 CGACTCGTTTTCTATTTTTCACGATTTTCAAAA-CTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * * *
19849855 TTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAA
319 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
19849920 AAGAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTGGAAAAAAGTGTCCCCATT
384 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
19849985 TCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAATTGCACTTTAAGGGGGTGTG
449 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
19850050 AGTTCTAGAGGTTTGA-GAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCAC
514 AGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
19850114 ATCATGTGCGCACACCCCCCGGCCCCCCTGATCATCGAAAACCCAATGCCGCCGGTCAGGTTCTC
579 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAAACCCAATGCCGTCGGTCAGGTTCTC
* * * * *
19850179 TGATGATGCTCCGGCGATGGTGCCTCGGCGAAGAAAAATACGGCACCTGCACATGCCAGAGCCCA
644 CGACGATGCTCCGGCGATGGTGCC-CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
* * *
19850244 GCATGTGCCACCGTAACCCTCGGTCCGGTCCGATCTTAGA-TTGGAATGAACTCCGTATGCTTAG
708 GCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * ** * * *
19850308 ACTGGGAAAGATCTCTATATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGTTCAACCGGCC
773 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCC
* * * * * **
19850373 AAAGGGGTGGGATGCGTAAGCCGGGGATCGACCTGGTCCCCCTCTACGTACTATCGATCC
838 AGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * ** * ** *
19850433 TGCTGTCGTAAACATTGGTCTTGCCCAATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTC-TGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
19850498 CAGACAAAACGAGCGGACGGGCGAGCGAGCACTATGCCGGCCAGAGAGATGGGATGCGCAAGCCG
65 CAGACGAAACGAGCGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * * *
19850563 TGGATCGATAGAGTGTTAGGTGGACTTAAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
130 TGGATCGATAGGGTGGTAGGTGG-GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
*
19850628 TTATGGCTTGTAAATTCAT-CAATGGTTCCTTAAGCCTTCAACGTCGAAGTTTCATGGCAAGACG
194 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC-ACGT-GAAGTTTCATGGCAAGACG
* * * * *
19850692 ACTCCTTTTCTATTTTTCACGATTTTGAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTT
257 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* *
19850757 GAAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
322 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* ** *
19850822 AATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTAGCCATTTTA
387 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
19850887 GACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGT
452 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
19850952 TCTCA-AGGTTTGATGAGGGATAGGGGGCCTATATAAGGGCCAAGTACCAGCACCCATCGCACAT
517 TCT-AGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
19851016 CATGTGCGCGCACCCCCC-GACCCCCCGATCG-CCGAAACGCCAATGCCGCCGGTCAGGTTCTCC
581 CATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAAAC-CCAATGCCGTCGGTCAGGTTCTCC
** * * ** *
19851079 GGTGATGCTCTGGCGATGGTGCTCGGGTGAAGAAAAATACGGCACCAGCACATGCCTGAGCCC-G
645 GACGATGCTCCGGCGATGGTGC-CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* * * * * *
19851143 ACATGTGCTATCACAACCCTCGGTCTGGTTCGATCTTACACTGGGAATGAACTCGGTATGCTTAG
709 -CATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * *
19851208 ACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAACGTGCAGGCACTCAGCCGGCC
773 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCC
* * * * * *
19851273 AGAAGGGTGGGACGCGCAAGTCGGGGATCGATCGGGTCCACCTCTACGTGTTGTCGATCC
838 AGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* *** * *
19851333 TACTATAGTAACCCTCAATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCTG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * **
19851398 CTGACGAAATTAACGGGCGGAC--G-G-GCACTACGGTGGCCAGAGAGACGGGATGCGCAAGCCG
65 CAGACGAAACGAGCGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
19851459 TGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCAT-TTCTCTACGTGCCAATGCCATTT
130 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT-TCTGCGTGCCAATGCCATTT
*
19851523 TTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
194 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
*
19851588 TCGTTTTCTATTTTT--C-A---T---AA---TTT----TT---G-------AAACTTTTTTC-A
259 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGA
* ** **
19851626 GAAGGTGTTTTGGGACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACACACAAAAAA
324 -AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
19851691 ATTTAGCTAAAAACTCGAAGTGTACGAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAG
388 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
19851756 ATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
453 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
19851821 CTCA-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCATATC
518 CT-AGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
19851885 ATGTGCGCACACCTCCCCCGACCCCCCCGATCGTC-GAAACCCTAATACCGTCGGTCAAGTTCTC
582 ATGTGCGCACA-C-CCCCCGGCCCCCCCGATCGTCGGAAACCC-AATGCCGTCGGTCAGGTTCTC
** * * * * *
19851949 CGGTGACGCTCTGACGATGGTGCCTCGACGAAGAAAAATACGACACCAGCACATGCCTGAGCCCA
644 CGACGATGCTCCGGCGATGGTGCC-CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
* * * * * * *
19852014 GCATGTGCTATCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAATTTCGTATGCTTAG
708 GCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * ** * * *
19852079 ACTGGGAATGAACTCCGTATGACTAAGTCAATCCATAAAATGAGCGTGCAGGCGCTCAACCGACC
773 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCC
* * ** * * * *
19852144 AGAGGGGCGAGATGCATAAGCCGGGGATCGATCGGGTCCCTCTTTGCATGCTGCCGATCC
838 AGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * *
19852204 TGCTGCTGCAACGCTC-GATCCAGTCCGATCTTAGACTGGGAATTAACTCCGTATGCCTAAGACA
1 TGCTGCCGCAACCCTCAG-T-CTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
19852268 ACCGAGGAAACGAACGGGCGGCCGGGCAGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
64 ACAGACGAAACGAGCGGGCGGGCGGGC--G-A-GCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * * * *
19852333 AGCCATGGATCGATAGGGTGGTAGGTTGCTTTAGGTACATCTTCATATTTCTGTGTTCCAATACC
125 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* * *
19852398 ATTTTTATGGCTTGTAAATTAAAACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
190 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** * *
19852463 CGACTCGTTTTCTATTTTTCATTATTTTCAAAA-TTTTTACGGTTTGGGATTTTTTAAAATTTTT
255 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* *
19852527 TCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTGGTTGGCATGCACAAA
320 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
19852592 AAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTT
385 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
19852657 CAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTCTGA
450 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
19852722 GTTCTCA-AGGTTTGATTAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
515 GTTCT-AGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
19852786 ATCCTGTGCGTACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
579 ATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAAACCCAATGCCGTCGGTCAGGTTCT
* *
19852851 CCGGCGATGCT-C--CGA--------G--GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
643 CCGACGATGCTCCGGCGATGGTGCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
* * * * *
19852903 GCATGTGCTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTACGCTTAG
708 GCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
*
19852968 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GCC
773 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCC
* * ** * * * * *
19853032 AGAGGGGCGGGATGCGCAAGCCGAGGATTAACCAGGTCCCCCTCTATGTGCTGCAGATTC
838 AGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * *
19853092 TGCT-ACGCAACCCTC-GATCCGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCAG-TCTG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
19853155 ACCGACGAAACGAGCGGGCGGGCGGGCGGGTGGGCACTACGCCGGCTAGAGAGACGGGATGTGCA
64 ACAGACGAAACGAGCGGGCGGGCGGGC----GAGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * *
19853220 AGCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTTATATTTCTACATGCCAATGCA
125 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
*
19853285 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGA
190 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** *
19853350 CGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTT
255 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * *
19853415 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGACATGCACAAA
320 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
19853480 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTT
385 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * *
19853545 GAGACACTTTAAAGGCTACTGACAGCAAACCTGTAAATTCTCAAATGCTCTTTAAGGGGTTGTGA
450 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
19853610 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGTGCCAAGTACGAGCACCC-TCCGTAC
515 GTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT-CGCAC
* * * *
19853674 ATCATGTGCGCACACCCCCCGG-CCCCCCGATCATCGGAACCCCAATACCG-CTAGTCAGGTTCT
579 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAAACCCAATGCCGTC-GGTCAGGTTCT
* * * * * *
19853737 CCGGCGATGCTCCAGCGATGGTGCCCGACAAAGAAAAATGCGGCACCAACACATGCCAGAGCCCA
643 CCGACGATGCTCCGGCGATGGTGCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
* * * *
19853802 GCATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTA
708 GCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
19853860 AGCCTAAACC
Statistics
Matches: 3782, Mismatches: 454, Indels: 194
0.85 0.10 0.04
Matches are distributed among these distances:
867 1 0.00
868 258 0.07
869 1 0.00
870 8 0.00
871 311 0.08
872 4 0.00
873 1 0.00
875 1 0.00
876 1 0.00
878 2 0.00
879 164 0.04
880 2 0.00
882 4 0.00
885 4 0.00
886 49 0.01
887 255 0.07
888 327 0.09
889 148 0.04
890 3 0.00
891 2 0.00
892 1 0.00
894 39 0.01
895 56 0.01
896 72 0.02
897 3 0.00
898 80 0.02
899 490 0.13
900 310 0.08
901 7 0.00
902 197 0.05
903 361 0.10
904 405 0.11
905 145 0.04
906 1 0.00
907 69 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
TGCTGCCGCAACCCTCAGTCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
AGACGAAACGAGCGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTA
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCCCCCCCGATCGTCGGAAACCCAATGCCGTCGGTCAGGTTCTCCGACGAT
GCTCCGGCGATGGTGCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGT
GGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
Found at i:19851213 original size:26 final size:26
Alignment explanation
Indices: 19851177--19851229 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19851167 CTGGTTCGAT
19851177 CTTACACTGGGAATGAAC-TCGGTATG
1 CTTACACTGGGAATGAACTTC-GTATG
*
19851203 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTTCGTATG
19851229 C
1 C
19851230 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTTCGTATG
Found at i:19852084 original size:26 final size:26
Alignment explanation
Indices: 19852048--19852099 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19852038 CCGATCTGAT
* *
19852048 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19852074 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19852100 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19852966 original size:26 final size:26
Alignment explanation
Indices: 19852937--19852986 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
19852927 CCGATCTGAT
19852937 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
19852963 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
19852987 TGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:19853614 original size:888 final size:890
Alignment explanation
Indices: 19845065--19853859 Score: 7091
Period size: 869 Copynumber: 9.8 Consensus size: 890
19845055 TGATCCAATT
* * *
19845065 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAGCCGACAAAACGAAC--G-GG-CGGGC--G-
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCGACGAAACGAACGGGCGGCCGGGCAGGC
* * * * **
19845123 -GGCACTACGCTGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGATAGG-TGGGT
66 AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTTGCTT
* * * *
19845186 TAGGCACATCTTCATCTTTCTACATGCCAATGTC-ATTTTTATGGCTTGT-AATTCATACAATGG
131 TAGGCACATCTTCATATTTCTACATGCCAAT-ACAATTTTTATGGCTTGTAAATTAAAACAATGG
* * * * * *
19845249 TTCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGATGACTCGTTTT-TATTTTTTACGATTTTCA
195 TCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCA
*
19845313 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGT
260 AAA-TTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
**
19845377 AGACGTGATCCTTGTATTTTCATTGGC-TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
323 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * *
19845441 AGA-TTTGTGGCCA-TTGAAAAAAGTGTCACCATTTCAGACACTTT-ATGGCTACTGGCCGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAA
*
19845503 CCTGTAAAATC-CAAATGCT-TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
* * *
19845566 CCAATATATGGGCCAAGTACTATGCACCCATCGCACATCATAGTGCGCACACCCCCTCGGCCCCC
518 CCAATATAAGGGCCAAGTACCA-GCACCCATCGCACATCAT-GTGCGCACACCCCCCCGGCCCCC
* * * * * *
19845631 TCGATCGCCGGAACCCCAATGCCATCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
581 CCGATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGGCGATGCTCC-ACGA----------
* * * * *
19845696 GCGAAGAAAAATACGACACCAGCACATGCCCGACCCCAGCATGTGCTGTCGCAACCCTCGGTCCG
635 G-GAAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
*
19845761 AT-TCAATCTTAGACTGGGAATGAACT---T-CG--T--AC-------G-----C------CTAA
699 ATCT-GATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGACTAA
** * * * ** * * * * * * *
19845799 GTCAACCCATGAAATGAGCGTACGGGCATTCAGCTGGCCATAGGGGTGGGATGCGCAAGCCGAGG
763 GTCAACCCACAAAACGAGCGTGCAGGCGCTCAACCGACCAGAGGGGCGAGATGCACAAGCCGAGG
* * ** * * *** *
19845864 ATCGATC-GAGTACTCCTCTGCG-TGCTGTC-GATCCTGCTGCTGCAACCCTCGGTTTGGTCTGA
828 ATCAACCAG-GT-C-CCTCTATGATGCTG-CAGATCCTGCTACTGCAACCCTCGATCCAGTCCGA
19845926 TC
889 TC
* * * * * * *
19845928 TTAGAGTGGGAACGAACTCCATATGCCTAAG-CGAACCGACGAACCAAACGAGCTGG-CGGGCGG
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGAC-AACCGACGAAACGAACGGGC-GGCCGGGCAG
* * * * * * *
19845991 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTAGTAGGTGGG
64 GCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTTGC
* ** * * * *
19846056 TTTAGGCACATCTTCATATCTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
129 TTTAGGCACATCTTCATATTTCTACATGCCAATACAATTTTTATGGCTTGTAAATTAAAACAATG
* * * *
19846121 GTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGAAGACTCGTTTTCTATTTTTCACGATTTTC
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCACAATTTTC
* * * *
19846186 GAAACTTTTTGTC-GTTCGAAATTTTTTAAAATTTTTTCAGAAGGAGCTTTGGCCCCAAACTTGG
259 -AAAATTTTT-ACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
* * *
19846250 TAGACGTGATCCTTGTA--TTT-TTGGCAAGCATAAAAAAAATCAGCTAAAAACTCGAAGTGTAC
322 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * * * *** * *
19846312 AAGATTTTATGACCATTTGAAAAAAG-G-GCCAATATAAGGGCCAAGTACCAGCACCAATCGCAC
387 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT-T-----TC-AG-A-TA-CTTTAATGGC-T
**** *** * * ** ** * ** *
19846375 ATCATGTGC-GCACACCACCCCCGACCCCCCGACCGCTGGAACCCTAATGTCGTCGGTCAGGTTC
441 A-C-TG-GCAGCA-A--ACCTGTAAAATCTCAAATGCT----CTTTAAGGGGGT--GTGA-GTTC
* ** * ** ** ** * *** *
19846439 TC-TGGCGATGCTCCGGCGAT-GGTGCCCCGGT-GAA-GAAAAATGTGAACCAGCACATGC-TCG
493 TCAAGG-TTTGATGAGG-GATAGG-GGGCCAATATAAGGGCCAA-GT--ACCAGCAC--CCATC-
* * ** * * * * ****** * ** *
19846499 AGCCCAGCATGTGCTGTCGTAACCCTCAGTCTGGTTTGATCTTAGACTGGGAA--TGAAGT-CTG
549 -GCACATCATGTGC-G-CACACCCCCCCGGCCCCCCCGATC---G--TCGGAACCCCAA-TACCG
* * * * * * * * ** *
19846561 TATGCTTAGATTGGAATGACC-TCTGTATGC-CTAAGTCAACCCAAGAAACGAGCGTGCAGGCAC
605 T-CGGTCAGGTT---CT--CCGGC-G-ATGCTC-CA--CGA-GGAAGAAA--A--ATGC-GGCAC
* ** * * * * * * * *
19846624 TCAGC-C--GACCAAAGGGGCGGGATGCGCAAGCCGTGAATCAGCC-GGGTCC-CTCTTTGCGTG
653 -CAGCACATG-CCAGA-GCCCAGCATGTGC-TGCCG-CAA-C--CCTCGGTCCGATC--TG-AT-
* ** * * *
19846684 CTGTCGATCCTGCTGCCA-CAACCCTCGGTCTAGTCTGATCTTAGACTAGGAATGAACTCCGTAT
706 CT-TAGA--CTG--GGAATGAA--CTCCG--TA--C-G--CTTAGACTGGGAATGAACTCCGTAT
* ** ** * * * * * *
19846748 -ACCTAAGCCAACTGACAAAATAAGCGGGCGGGCACT-ACACCGGCTAGAGGGGC-AGAATGCGC
757 GA-CTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCA-ACCGACCAGAGGGGCGAG-ATGCAC
* ** * * * ** * *
19846810 AAGCCGGGGATCGGCCGGGT-CCTCCTCTGCGTGCTGTC-GATCCTGCTACCACAACCCTTGGTC
819 AAGCCGAGGATCAACCAGGTCCCT-CTATG-ATGCTG-CAGATCCTGCTACTGCAACCCTCGATC
*
19846873 CAGTCCAATC
881 CAGTCCGATC
* * * * *
19846883 TTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACG-A------G-CGGG--TG-
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCGACGAAACGAACGGGCGGCCGGGCAGGC
* * * *** * *
19846937 -GGCACTATGCCGGCCAAAGAGACCGGATGCGCAAGATGTGGATCGATAGGGTGGTAGGTGGGTT
66 AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTTGCTT
* * * * * * *
19847001 TAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTACATGCCAATACAATTTTTATGGCTTGTAAATTAAAACAATGGT
* * * **
19847066 CCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCCA
196 CCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCACAATTTT-CA
* ** * * *
19847131 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCACAAACATGGTAG
260 AAATTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
19847196 ATGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
325 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
19847261 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGACTACTGGCAGTAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAACC
* * * *
19847326 TGTAAAATTTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGACGGATAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
* * * *
19847391 AATATAAGGACCAAGTACCAGCACCCATCACACATCATGTGCGCACACACCCCCGACCCCCCCGA
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
* * * *
19847456 TCGTCGGTACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGCTTTGGCGATGG
585 TCGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGGCGATGCT-C--C-A--------CGA---
* * * * *
19847521 TGCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAACATGTGCTACCACAACCCTC
635 ------G-GAAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * * * *
19847586 AGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATG
693 GGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * * *
19847651 CCTAAGTCAACCCACGAAATGAACGTGCGGGCGCTCAACCGGCCAGACGGTCGGGATGCACAAGC
758 ACTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAACCGACCAGAGGGGCGAGATGCACAAGC
* *** * * * * * * *
19847716 CGGGGATCGGTCGGGTCCCCTTCTGTG-TGCTACCGATCCTACTACCGCAACCCTC-AGTCCGGT
823 CGAGGATCAACCAGGT-CCC-TCTATGATGCTGCAGATCCTGCTACTGCAACCCTCGA-TCCAGT
*
19847779 CTGATC
885 CCGATC
* * * * *
19847785 TTAGATTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAAC-AAGCAGGCAGGCGAGCGGG
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCGACGAAACGAA-CGGGC-GGC---CGGG
* ** * * * * *
19847849 CGGGTTGGCACTACGTCGGTCAGAGAGACGGGATGCGCAAGTCGTCGATCGATAGGGTGGTAGGT
61 CAGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
* * * * * * * * *
19847914 GGGTTTAGGCACATCTTCACATTTCTGCGTGCCAATGCCATTTTTATGGCTTCTAAATTCAAACA
126 TGCTTTAGGCACATCTTCATATTTCTACATGCCAATACAATTTTTATGGCTTGTAAATTAAAACA
* * * *
19847979 ATTGTCCCTTAAGCCTTCA-GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
191 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCA-CAAT
* * * * * *
19848043 TTTGAAACTTTTTATGGTTCGAGATTTTTAAAAATTTTTTCGGAATGAGTTTTGGCCCCAAACTT
255 TTTCAAAATTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
* *
19848108 GGTAGACGTGATCATTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGT
320 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
19848173 ACACGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
385 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGC
* *
19848238 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGG
450 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
* * ** * *
19848303 GGGCCAATATAAGGGCCATGTACCAGTAGTCATCGCACATCATGT-CTGCACACCCCCTCAGCCC
515 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-GCACACCCCCCCGGCCC
** * * * *
19848367 CTTCGATCGTTGGAAACCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTACCC
579 CCCCGATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGGCGATGCTCC---------A---
* * * * * * * *
19848432 CGACGAAGAAAAATGAGGCACCAGGACCTGCCCGAGCCCAACATGTG-TGGCTGCAACCCTTGGT
632 CGAGGAAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCT-GCCGCAACCCTCGGT
* * * * * * *
19848496 TCGGTCCGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
696 CCGATCTGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGACT
** *
19848561 AAGTCAACCCATGAAACGAGCGTGCGGGCGCTC-A--G-CC-----GG-G-GAT--------C--
761 AAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAACCGACCAGAGGGGCGAGATGCACAAGCCGA
* * * * **
19848605 GG-T----CGGGTCCC-C----CT-CTGC-G-TGCTGC--C-GCAACCCTCGGTCTGGTCCGATC
826 GGATCAACCAGGTCCCTCTATGATGCTGCAGATCCTGCTACTGCAACCCTCGATCCAGTCCGATC
* * * * *
19848654 TTAGACTGGGAATGAACTCCGTATGCTTAAGCCAACCGACGAAACGAGCGAGCGGACGGGCGGTC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCGACGAAACGA---A-CGGGCGGCCGGGC
* * * * * * * *
19848719 GGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGACCGATAGGGTGGTATGTG
62 AGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTT
* * * * * * *
19848784 GGTTTAGGCACATCTTCATCTTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
127 GCTTTAGGCACATCTTCATATTTCTACATGCCAATACAATTTTTATGGCTTGTAAATTAAAACAA
* * * * * * *
19848849 TGGTTCCTTAGGCATTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTT
192 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCACAATTT
*
19848914 TCAAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTTC-GAAGGAGTTTTGGCCCCAAACT
257 TCAAAA-TTTTTACGGTTCGA-GATTTTTTAAAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACT
*
19848977 TGGTAGACGTGATCCTTGTATTTTCGTTGGC-TGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
319 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * * *
19849041 TACAAGATTTTGTGGCCATTTGAAAAAAGTGTCACCATTTTAGACACTTTAATGGCCACTGGCAG
384 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAG
* *
19849106 CAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
449 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
* * *
19849171 GGGGCCAATATATGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCC
514 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
* * * * * * *
19849236 CCTCGAACGCCGGAACCCCAATGCCATCGATCAGGTTCTCCGACGATGCTCAGGCGATGGTGCCC
579 CCCCGATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGGCGATGCTC---C-A--------
* * * *
19849301 CGACGAAGAAAAATACGGCGCCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
632 CGAGGAAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * * * * * * *
19849366 CGGTCCGATCTTAGGCTAGGAATGAACTCCGTATGCTTAGACTGTGAATGAACTCTGTATGCCTA
697 CGATCTGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGACTA
* * * * * * * *
19849431 AGTCAACCCGA-AAAACGAGCGTGCGGGCGTTCAACCGGCTAGAGGGGTGGGATGCGCAACCCGA
762 AGTCAACCC-ACAAAACGAGCGTGCAGGCGCTCAACCGACCAGAGGGGCGAGATGCACAAGCCGA
* * * * * * * * * * *
19849495 GGGTCGATCGGGTGCCCCTCTACG-TGCTACCGATCTTGCTGCCGCAACCCTC-AGTCC-GATCT
826 GGATCAACCAGGT--CCCTCTATGATGCTGCAGATCCTGCTACTGCAACCCTCGA-TCCAG-TCC
19849557 GATC
887 GATC
* * * * * * * * * *
19849561 TTAGACTAGGAATGAACTCCGTATGCCGAAGCCAACTGATGAAACGAGCGGGCGGGCAGACGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCGACGAAACGAACGGGCGGCCGGGCAGGC
* * * *
19849626 AGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGGTCGATAGGGTGGTAGG-TGCGT
66 AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTTGC-T
* *** * * * *
19849690 TTAGGCACATCTTTATATTTCTGTGTGCCAACACCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTACATGCCAATACAATTTTTATGGCTTGTAAATTAAAACAATGG
* * * * *
19849755 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTGTTTTTCACGATTTTCA
195 TCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCA
* *
19849820 AAATTTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGT
260 AAA--TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
19849885 AGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAGAATTCAGCTAAAAACTCGAAGTGTACA
323 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
19849950 AGATTTTGTGACCATTGGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAA
* * *
19850015 CTTGTAAAATCTCAATTGCACTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGA-GAGGGATAGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-AGGTTTGATGAGGGATAGGGG
*
19850078 GCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCC
517 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
* * * * * * * *
19850142 TGATCATCGAAAACCCAATGCCGCCGGTCAGGTTCTCTGATGATGCTCCGGCGATGGTGCCTCG-
582 CGATCGTCGGAACCCCAATACCGTCGGTCA-G------G-T--T-CTCCGGCGATGCT-CCACGA
* * ** *
19850206 GCGAAGAAAAATACGGCACCTGCACATGCCAGAGCCCAGCATGTGCCACCGTAACCCTCGGTCCG
635 G-GAAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* * * * * * ** *
19850271 GTCCGATCTTAGA-TTGGAATGAACTCCGTATGCTTAGACTGGGAAAGATCTCTATATGCCTAAG
699 ATCTGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGACTAAG
* * * * * * * ** *
19850335 TCAACCCACGAAATGAGCGTGCAGGCGTTCAACCGGCCAAAGGGGTGGGATGCGTAAGCCGGGGA
764 TCAACCCACAAAACGAGCGTGCAGGCGCTCAACCGACCAGAGGGGCGAGATGCACAAGCCGAGGA
* * * * * * * * * * * ** * *
19850400 TCGACCTGGTCCCCCTCTACG-TACTATC-GATCCTGCT-GTCGTAAACATTGGTCTTGCCCAAT
829 TCAACCAGGT--CCCTCTATGATGCT-GCAGATCCTGCTACT-GCAACCCTCGATCCAGTCCGAT
19850462 C
890 C
* * * * * * * *
19850463 TTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACAGACAAAACGAGCGGACGGGCGAGC--G-
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCGACGAAACGAACGGGCGGCCGGGCAGGC
* * * * * *
19850525 A-GCACTATGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGAGTGTTAGGTGGACT
66 AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTTG-CT
* * * * * *
19850589 TAAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT-CATCAATGG
130 TTAGGCACATCTTCATATTTCTACATGCCAATACAATTTTTATGGCTTGTAAATTAAAACAATGG
* * * *
19850653 TTCCTTAAGCCTTCAACGTCGAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCACGATTTT
195 TCCCTTAAGCCTTC-ACGT-GAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCACAATTTT
* * * * *
19850718 GAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT-TGAAAGGATTTTTGGCCCCAAACTTG
258 CAAAA-TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTG
* *
19850782 GTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTA
321 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
** * *
19850847 CAAGATTTTGTGACCATTTGAAAAAAGTGTAGCCATTTTAGACACTTTAATGGCTACTGGCAGCA
386 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCA
* *
19850912 AACCTATAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
451 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
* * *
19850977 GGCCTATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCGCA-CCCCCC-GACCCC
516 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* * * * * * *
19851040 CCGATCGCCGAAACGCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTGGCGATGGTGCTCGG
581 CCGATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGGCGATGCTC---C-A-------CGA
* * ** * *
19851105 GTGAAGAAAAATACGGCACCAGCACATGCCTGAGCCC-GACATGTGCTATCACAACCCTCGGTCT
635 G-GAAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAG-CATGTGCTGCCGCAACCCTCGGTCC
* * * * * *
19851169 GGT-TCGATCTTACACTGGGAATGAACTCGGTATGCTTAGACTGGGAATGAACTTCGTATGCCTA
698 GATCT-GATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGACTA
* * * * * * * * * * * *
19851233 AGTCAACCCACGAAACGAACGTGCAGGCACTCAGCCGGCCAGAAGGGTGGGACGCGCAAGTCGGG
762 AGTCAACCCACAAAACGAGCGTGCAGGCGCTCAACCGACCAGAGGGGCGAGATGCACAAGCCGAG
* * * * * * * * * *
19851298 GATCGATCGGGTCCACCTCTACG-TGTTGTC-GATCCTACTA-TAGTAACCCTCAAT-CTGATCT
827 GATCAACCAGGT-C-CCTCTATGATGCTG-CAGATCCTGCTACT-GCAACCCTCGATCCAG-TCC
19851359 GATC
887 GATC
* * **
19851363 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATTAAC--G-GG-C-GG-A--C
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCGACGAAACGAACGGGCGGCCGGGCAGGC
* ** * * * *
19851420 GGGCACTACGGTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTT
66 AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTTGCTT
* * * * *
19851485 TAGGCACATCTTCAT-TTCTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGG
131 TAGGCACATCTTCATATT-TCTACATGCCAATACAATTTTTATGGCTTGTAAATTAAAACAATGG
*
19851549 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT--C-A---T--
195 TCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCA
* * **
19851606 -AA--TTT----TT---G-------AAACTTTTTTCAGAAGGTGTTTTGGGACCAAACTTGGTAG
260 AAATTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
** * *
19851654 ACGTGATCCTTGTATTTTTGTTGGCACACACAAAAAAATTTAGCTAAAAACTCGAAGTGTACGAG
325 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
19851719 ATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAACC
19851784 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
* * *
19851849 AATATAAGGGCCAAGTACCAGCACCCATTGCATATCATGTGCGCACACCTCCCCCGACCCCCCCG
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGGCCCCCCCG
* * * * * *
19851914 ATCGTCGAAACCCTAATACCGTCGGTCAAGTTCTCCGGTGACGCTCTGACGATGGTGCCTCGACG
584 ATCGTCGGAACCCCAATACCGTCGGTCAGGTTCT-C-----CG----G-CGATGCT-CCACGAGG
* * * ** * *
19851979 AAGAAAAATACGACACCAGCACATGCCTGAGCCCAGCATGTGCTATCGCAACCCTTGATCCGATC
637 AAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATC
* * *
19852044 TGATCTTAGACTGGGAATGAATTTCGTATGCTTAGACTGGGAATGAACTCCGTATGACTAAGTCA
702 TGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGACTAAGTCA
* * * * * *
19852109 ATCCATAAAATGAGCGTGCAGGCGCTCAACCGACCAGAGGGGCGAGATGCATAAGCCGGGGATCG
767 ACCCACAAAACGAGCGTGCAGGCGCTCAACCGACCAGAGGGGCGAGATGCACAAGCCGAGGATCA
* * * * * *
19852174 ATCGGGTCCCTCTTTGCATGCTGCCGATCCTGCTGCTGCAACGCTCGATCCAGTCCGATC
832 ACCAGGTCCCTCTATG-ATGCTGCAGATCCTGCTACTGCAACCCTCGATCCAGTCCGATC
* *
19852234 TTAGACTGGGAATTAACTCCGTATGCCTAAGACAACCGAGGAAACGAACGGGCGGCCGGGCAGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCGACGAAACGAACGGGCGGCCGGGCAGGC
19852299 AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTTGCTT
66 AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTTGCTT
* *** * *
19852364 TAGGTACATCTTCATATTTCTGTGTTCCAATACCATTTTTATGGCTTGTAAATTAAAACAATGGT
131 TAGGCACATCTTCATATTTCTACATGCCAATACAATTTTTATGGCTTGTAAATTAAAACAATGGT
* * **
19852429 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATTATTTTCAA
196 CCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAA
* * *
19852494 AATTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGA
261 AATTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
19852559 CGTGATCCTTGTATTTTGGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
326 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
19852624 TTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAACCT
391 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAACCT
* * * *
19852689 GTAAAATCTCAAACGCTCTTTAAGGGGGTCTGAGTTCTCAAGGTTTGATTAGGGATAAGGGGCCA
456 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
* *
19852754 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCCTGTGCGTACACCCCCCCGGCCCCCCCGAT
521 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGAT
*
19852819 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCT-C-CGAGGAAGAAAAATGCGGC
586 CGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGGCGATGCTCCACGAGGAAGAAAAATGCGGC
* *
19852882 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGG
651 ACCAGCACATGCCAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGG
* *
19852947 GAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
716 GAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGACTAAGTCAACCCACAAAACGAG
* * * * *
19853012 CGTGCGGGCGCTCAGCCG-CCAGAGGGGCGGGATGCGCAAGCCGAGGATTAACCAGGTCCCCCTC
781 CGTGCAGGCGCTCAACCGACCAGAGGGGCGAGATGCACAAGCCGAGGATCAACCAGGT--CCCTC
* *
19853076 TATG-TGCTGCAGATTCTGCTAC-GCAACCCTCGATCC-GATCTGATC
844 TATGATGCTGCAGATCCTGCTACTGCAACCCTCGATCCAG-TCCGATC
* * * * * *
19853121 TTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGT
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCGACGAAACGAACGGGCGGCCGGGCAGGC
* * * *
19853186 GGGCACTACGCCGGCTAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGTG-T
66 AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT-TGCT
* * * *
19853250 TTAGGCACATCTTTATATTTCTACATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTACATGCCAATACAATTTTTATGGCTTGTAAATTAAAACAATGG
*
19853315 TCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCACAA-TTTTC
* * *
19853380 AAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
259 AAAATTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
19853445 GATGTGATCCTTGTATTTTTTTTGACATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
324 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * * *
19853510 GATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAAAGGCTACTGACAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAAC
* * *
19853575 CTGTAAATTCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
* * *
19853640 CAATATAAGTGCCAAGTACGAGCACCC-TCCGTACATCATGTGCGCACA-CCCCCCGG-CCCCCC
519 CAATATAAGGGCCAAGTACCAGCACCCAT-CGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
* *
19853702 GATCATCGGAACCCCAATACCG-CTAGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCGAC
583 GATCGTCGGAACCCCAATACCGTC-GGTCAGGTTCTCCGGCGATGCTCCA-CGA----G---G--
* * * *
19853766 AAAGAAAAATGCGGCACCAACACATGCCAGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGT
637 -AAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGAT
* *
19853831 CCGATCTTAGATTGGGAATGAACTCCGTA
701 CTGATCTTAGACTGGGAATGAACTCCGTA
19853860 AGCCTAAACC
Statistics
Matches: 6574, Mismatches: 946, Indels: 788
0.79 0.11 0.09
Matches are distributed among these distances:
862 1 0.00
863 40 0.01
864 1 0.00
865 1 0.00
867 7 0.00
868 258 0.04
869 612 0.09
870 122 0.02
871 342 0.05
872 103 0.02
873 81 0.01
874 93 0.01
875 7 0.00
876 2 0.00
877 3 0.00
878 6 0.00
879 169 0.03
880 10 0.00
881 8 0.00
882 10 0.00
883 5 0.00
884 1 0.00
885 6 0.00
886 55 0.01
887 257 0.04
888 345 0.05
889 157 0.02
890 20 0.00
891 3 0.00
892 8 0.00
893 2 0.00
894 39 0.01
895 66 0.01
896 77 0.01
897 17 0.00
898 94 0.01
899 474 0.07
900 299 0.05
901 8 0.00
902 364 0.06
903 363 0.06
904 413 0.06
905 143 0.02
906 10 0.00
907 209 0.03
908 13 0.00
909 18 0.00
910 14 0.00
911 7 0.00
912 12 0.00
913 14 0.00
914 30 0.00
915 11 0.00
916 6 0.00
917 385 0.06
918 149 0.02
919 7 0.00
920 14 0.00
921 9 0.00
922 18 0.00
923 13 0.00
924 8 0.00
925 17 0.00
926 9 0.00
927 7 0.00
928 7 0.00
930 1 0.00
931 1 0.00
932 9 0.00
934 3 0.00
935 5 0.00
936 1 0.00
937 3 0.00
938 5 0.00
939 2 0.00
940 1 0.00
941 2 0.00
942 2 0.00
943 240 0.04
944 2 0.00
945 4 0.00
946 64 0.01
947 7 0.00
948 4 0.00
949 1 0.00
952 3 0.00
953 3 0.00
954 3 0.00
955 127 0.02
956 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (890 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCGACGAAACGAACGGGCGGCCGGGCAGGC
AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTTGCTT
TAGGCACATCTTCATATTTCTACATGCCAATACAATTTTTATGGCTTGTAAATTAAAACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAA
AATTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGAT
CGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGGCGATGCTCCACGAGGAAGAAAAATGCGGC
ACCAGCACATGCCAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGG
GAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGACTAAGTCAACCCACAAAACGAG
CGTGCAGGCGCTCAACCGACCAGAGGGGCGAGATGCACAAGCCGAGGATCAACCAGGTCCCTCTA
TGATGCTGCAGATCCTGCTACTGCAACCCTCGATCCAGTCCGATC
Found at i:19854336 original size:26 final size:26
Alignment explanation
Indices: 19854307--19854359 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19854297 CCGGTCCGAT
* *
19854307 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19854333 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
19854359 C
1 C
19854360 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19856282 original size:26 final size:26
Alignment explanation
Indices: 19856246--19856297 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19856236 TTTGGTTCAA
19856246 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
*
19856272 TCTTAGACTGGGAATGAACTCTGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
19856298 GCCTAAGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:19858159 original size:532 final size:532
Alignment explanation
Indices: 19857155--19858220 Score: 1505
Period size: 532 Copynumber: 2.0 Consensus size: 532
19857145 CCGATCTTAG
* * **
19857155 ACTGGGAATGAACTCCGTATGCTTGGACTGGGAATGAACTCTGTATACCTAAGTCAACTTACAAA
1 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACAAA
* * *
19857220 ATGAGCGTGCGGGCGCTCAGCCGACCAACGGGGCGAGATGCGCAAGCCAGGGATCGATCGGGTCC
66 ACGAGCATACGGGCGCTCAGCCGACCAACGGGGCGAGATGCGCAAGCCAGGGATCGATCGGGTCC
*
19857285 CCCTTTGTGTGCTGCCAATCATGCTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATG
131 CCCTTTGCGTGCTGCCAATCATGCTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATG
* * * * * * *
19857350 AACTCCGTATGCCTAATCCAACTAACGAAACGAGCGGACGGGCGGGCGGGCACTACGCCAGCCAG
196 AACTCCGTAGGCCTAAGCCAACCAACAAAACGAGCGGACAGGCGAGCGAGCACTACGCCAGCCAG
19857415 AGAGACAGGCTGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATT
261 AGAGACAGGCTGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATT
*
19857480 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTG
326 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* *
19857545 AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAG
391 AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAAATTTTTACGGTTAGAG
* ** * *
19857610 ATTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCT-AACTTGGTAGACGTGATCCTTTTATG
456 ATTTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-AACTGAACTTAGTAGACGTGATCCTTGTATG
19857674 TTTGTTGGCATGC
520 TTTGTTGGCATGC
* * *
19857687 ACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
1 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACAAA
* * * * *
19857752 ACGAGCATACGGGCGCTCAGTCGACCAGA-GGGGCGGGATGTGCAAGTCGGGGATC-ATCTGGGT
66 ACGAGCATACGGGCGCTCAGCCGACCA-ACGGGGCGAGATGCGCAAGCCAGGGATCGATC-GGGT
* * * * *
19857815 -CCCCTTCTGCGTGCTGTCAATCCTGCTGCCGCAACCCTTGGTTTGATCTAATCTTAGACTGGGA
129 CCCCCTT-TGCGTGCTGCCAATCATGCTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGA
* * * ** * ***
19857879 ATGAACTCCGTAGGCCTAAGCCAACCGACAAAATGAGTGGGTAGGCGAGCGAGCACTGCGTTGGC
193 ATGAACTCCGTAGGCCTAAGCCAACCAACAAAACGAGCGGACAGGCGAGCGAGCACTACGCCAGC
** * * **
19857944 CAGAGAGGTAGGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCGTATCTTCAT
258 CAGAGAGACAGGCTGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCAT
*
19858009 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTC
323 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
** * *
19858074 GTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTTGAAAATTTTTACAGTT
388 GTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGA-TTTTTGAAAATTTTTAC-GGT
* *
19858139 TAG-GA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGAACTGAATTTATTAGACGTGATCCTTG
451 TAGAGATTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGAACTGAACTTAGTAGACGTGATCCTTG
*
19858202 TATTTTTGTTGGCATGC
516 TATGTTTGTTGGCATGC
19858219 AC
1 AC
19858221 AAAAAAATTC
Statistics
Matches: 469, Mismatches: 59, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
531 11 0.02
532 435 0.93
533 19 0.04
534 4 0.01
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (532 bp):
ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACAAA
ACGAGCATACGGGCGCTCAGCCGACCAACGGGGCGAGATGCGCAAGCCAGGGATCGATCGGGTCC
CCCTTTGCGTGCTGCCAATCATGCTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATG
AACTCCGTAGGCCTAAGCCAACCAACAAAACGAGCGGACAGGCGAGCGAGCACTACGCCAGCCAG
AGAGACAGGCTGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATT
TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAAATTTTTACGGTTAGAG
ATTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGAACTGAACTTAGTAGACGTGATCCTTGTATGT
TTGTTGGCATGC
Found at i:19858618 original size:26 final size:26
Alignment explanation
Indices: 19858582--19858634 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19858572 CTGGTCCTAT
* *
19858582 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19858608 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19858634 C
1 C
19858635 ATGAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19859505 original size:26 final size:26
Alignment explanation
Indices: 19859475--19859525 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19859465 CGATCCGATC
**
19859475 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAAAAAACTCCGTATGG
19859501 TTAGACTGGGAAAAAACTCCGTATG
1 TTAGACTGGGAAAAAACTCCGTATG
19859526 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (26 bp):
TTAGACTGGGAAAAAACTCCGTATGG
Found at i:19860396 original size:26 final size:26
Alignment explanation
Indices: 19860367--19860419 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19860357 CTGGTCTGAT
19860367 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
*
19860393 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
19860419 C
1 C
19860420 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:19860818 original size:903 final size:886
Alignment explanation
Indices: 19857687--19862019 Score: 5538
Period size: 892 Copynumber: 4.8 Consensus size: 886
19857677 GTTGGCATGC
*
19857687 ACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
1 ACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
* * * ** * * *
19857752 ACGAGCATACGGGCGCTCAGTCGACCAGAGGGGCGGGATGTGCAAGTCGGGGATCATCTGGGTCC
66 ACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCACAAGCCGGGGATC-GCCGGGTCC
* * * * * * * * *
19857817 CCTTCTGCGTGCTGTCAATCCTGCTGCCGCAACCCTTGGTTTGATCTAATCTTAGACTGGGAATG
130 CCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTTAGTCTGGTCTGATCTTAGACTGGGAATG
* * * * * * *
19857882 AACTCCGTAGGCCTAAGCCAACCGACAAAATGAG-TG-GGTAGGCGAGCGAGCACTGCGTTGGCC
195 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGT-GGCG-GCGGGCACTACGTCGGCC
*** * **
19857945 AGAGAGGTAGGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCGTATCTTCATA
258 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* *
19858010 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCG
323 TTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * * *
19858075 TGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTTGAAAATTTTTACAGTTT
388 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTTGAAACTTTTTACGGTTG
* ** * **
19858140 AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGAACTGAATTTATTAGACGTGATCCTTGTAT
452 A-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTAT
* *
19858205 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCGTTT
516 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * *
19858270 GAAAAAAGAGTCCCCATTTTAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAAT
581 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
*
19858335 GCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
646 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * * * *
19858400 TACCAGCACCCATTGAACGTCATGTGCGCATACCCCCCCGGCCCCCTCGATCGTTGGAA-CCCAA
711 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGGCCCCC-CGATCGTCGGAACCCCAA
** * *
19858464 TGCTACCGGTCAGGTTCTCCAGCGATGCTCCGGTGATGGTGCCCTGACAAAGAAAAATACGGCAC
775 TGCCGCCGGTCAGGTTCT---TCGA-----C---GATGGTGCCCTGACGAAGAAAAATACGGCAC
* * * * * *
19858529 CAGCACATGCTCGGGCCCAGCATCTGCTGTCGCAACCCTCAGTCTGGTCCTATCTTAG
829 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAG
* * *
19858587 ATTGGGAATGAACT-TCGTATGCTTAGACTGGGAATGAACTCCGTATGCATGAGTCAACCCATGA
1 ACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
* ** * ** * * *
19858651 AACGAGCGTACGGGCGCTCATTCGGCCAGAGGGGCGGGATG-AGCAAGTTGAGGATCGGTCGAGT
65 AACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCA-CAAGCCGGGGATC-GCCGGGT
* * * * * *
19858715 CCCCCTCTGCGTGC-ACTGATCCTGCTATCGCAACCCTCAGTTTGGTCTGATCTTAGACTGGGAA
128 CCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTTAGTCTGGTCTGATCTTAGACTGGGAA
* * * * *
19858779 TGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCAGGCGGGCGGGAGGGCGAGCACTACGCC
193 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGC-GG-TGG-CGGCGGGCACTACGTC
* * * *
19858844 GACCAGAGAGACGAGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTATGCACATCTT
254 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* ** *
19858909 CATATTTCTGCATGCCAATGCCATTTTTATCCCTTGTAAATTCATACAATGGTCTCTTAAGCCTT
319 CATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * *
19858974 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTCTTGCGG
384 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
*
19859039 TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCACCAAACTTGGTAGACGTGATCCCTG
449 TT-GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTG
* *
19859104 TATTTTTGTTGGCACGTA-AAAAAAA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
513 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
19859167 TTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCA
578 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
19859232 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATTAGGGGCCAATATAGGGCCC
643 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA-TA--GG--------GGG-CC
* * * *
19859297 AACATAAGGCCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-----C---CACCCCGAT
696 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGGCCCCCCGAT
* ** * * * *
19859354 CGCCGGAACCCCAATGCCGGTGGTCAGGTTCTTCGACGATGGTGCCTTGGCGAAGAAAAATGCAG
761 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGGTGCCCTGACGAAGAAAAATACGG
* * * *
19859419 CACCAGTACATGCCC-AGCCCAGCATGTGCTGCCGTAGCCCTC-GCTCCGATCCGATCTTAG
826 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAG-TCCGGTCCGATCTTAG
* * ** *
19859479 ACTGGGAATGAACTCCGTATGGTTAGACTGGGAAAAAACTCCGTATGCCTAAGTCAACTCATGAA
1 ACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
* * * * * ** *
19859544 ACGATCGTGCGGGCACTCAGCCGACCCGAGGGACGGGATGCATAAGCTAGGGATCGATCGGGTCC
66 ACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCACAAGCCGGGGATCG-CCGGGTCC
* *
19859609 CCCTC-AGCGTGCTGTCGATCCTGCTATCGCAACCCTTAGT-TCGGTCTGAT-TTAGACTGGGAA
130 CCCTCTA-CGTGCTGCCGATCCTGCTACCGCAACCCTTAGTCT-GGTCTGATCTTAGACTGGGAA
* * *
19859671 TGAACTCCATATGCCTAAGCCAACCGACGAAACGAGC-G-GG-GG-GG-GAGCACTACGTTGGCC
193 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGTGGCGGCGGGCACTACGTCGGCC
* *
19859731 AAAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
258 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * *
19859796 TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAAATCATAAAATGGTCCCTTAAGCCTTCACG
323 TTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * *
19859861 TGAAGTGTCATGGCAAGACAACTCGTTTTCTATATTTCACGATTTTTGAAACTTTTTACGGTTCG
388 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT-G
* ** *
19859926 AGATTTTTGAAAATTTTTTCGGAAGGAGTTTTTACCCCAAACTTGGTAGACGTGATCCTTGTATT
452 AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATT
*
19859991 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
517 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
19860056 AAAAAAGTGTCCACATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATG
582 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
19860121 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGT
647 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* *
19860186 ACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGGCCCCCCGATCGTTGGAACCCCAATG
712 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGGCCCCCCGATCGTCGGAACCCCAATG
* *
19860251 CCGTCGGTCAGGTTCTCCAGTGATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATACGGCACCA
777 CCGCCGGTCAGG-T-T-C-----T--T-CGACGATGGTGCCCTGACGAAGAAAAATACGGCACCA
* * * * * *
19860316 ACACATGCCCGAG-CCAGGCATGTGCTGCCGTAACCCTCATTCTGGTCTGATCTTAC
831 GCACATGCCCGAGCCCA-GCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAG
*
19860372 ACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAA
1 ACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
*
19860437 ACGAGCGTGCGGGCGCTCAACC-AGCCAGAGGGGCGGGATGCACAAGCCGGGGATCAGCCGGGTC
66 ACGAGCGTGCGGGCGCTCAGCCGA-CCAGAGGGGCGGGATGCACAAGCCGGGGATC-GCCGGGTC
* * * * **
19860501 CCCCTCTATGTACTGCCGATCCTACTACCGCATCCCTCGGTCTGGTCTGATCTTAGACTGGGAAT
129 CCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTTAGTCTGGTCTGATCTTAGACTGGGAAT
*
19860566 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCAGGTAGGCTGGCGGGCACTACGTCG
194 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-CGGC-GGT-GGC-GGCGGGCACTACGTCG
* *
19860631 GCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTC
255 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
19860696 ATATTTCTGTGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
320 ATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * *
19860761 ACATGAAGTTTCATGGCAAGACGACTTGTTTTTTATTTTTCACGATTTTTGAAACTTTTTGCGGT
385 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
* * * *
19860826 TTAGGATTTTTTAAAATATTTTCGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
450 TGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGT
* * *
19860891 ATTTTTTTTGGCACGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAT
514 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
19860956 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAA
579 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
**
19861021 ATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
644 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * *
19861086 AGTACCAGCACCCATCGCACCTCATGTGCGCACAACCCCCGGCCCCCCCGATCATCGGAACCTCA
709 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGGCCCCCCGATCGTCGGAACCCCA
* * * * *
19861151 ATGCTGCCGGTCAGGTTCTTCGGCGATGGTGCCCCGATGAAGAAAAATATGGCACCAGCACATGC
774 ATGCCGCCGGTCAGGTTCTTCGACGATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGC
* * * *
19861216 CCGAGGCCAGCTTGTGTTGCCGCAACCCTCGGTCCGGTCCGATCTTAG
839 CCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAG
* * * * * *
19861264 ACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTACGTCTAAGCCAACCCTTGAA
1 ACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
* * * * * *
19861329 ACGAGCGCGCGGGCACTCAGCCGACCAGAGGGGTGGGATGCGCAAGCCAGGGATCGACCGGGTCT
66 ACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCACAAGCCGGGGATCG-CCGGGTCC
* * * * **
19861394 TCCTCTACGTGCTACAGATCCTGCTGCTTCAACCCTTAGTCTGGTCTGATCTTAGACTGGGAATG
130 CCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTTAGTCTGGTCTGATCTTAGACTGGGAATG
* * * * * * *
19861459 AACTCCGTATGCCCAAGCCAATCGATGAAACGAGCGGGCGGGCTGACGAGCAGCCACTACATCGG
195 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGC-GG-TGGCG-GCGGGCACTACGTCGG
* *
19861524 CCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCA
256 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * *
19861589 TATTTCTACT-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGACCCTTAAGCCTTT
321 TATTTCT-GTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
19861653 ACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTAATTTTCATGATTTTTGAAACTTTTTACGGT
385 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-
* * * * *
19861718 TTGGGATTTTTTAAAATTTTTTTGAAAGGATTTTTGGCACCAAACTTGATAGACGTGATCCTTGT
449 TTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGT
* *
19861783 ATTTTTATTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
514 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * *
19861848 TTGAAAAAAGTGTTCCCATTTCAGACACTTTAATTGCTGCTGGCAGCAAACCTGTAAAATCTCAA
579 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * *
19861913 ATGCTCTTTAAGGCGGTGTGAGTTCTTGAGGTTTAATGAGGGATATGGGGCCAATATAAGGGCCA
644 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * *
19861978 AGTAGCAGCACCCATCACACATCATGTGTGCACACCCACCGG
709 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
19862020 TCCCTCGGAT
Statistics
Matches: 3016, Mismatches: 341, Indels: 160
0.86 0.10 0.05
Matches are distributed among these distances:
873 45 0.01
874 3 0.00
878 1 0.00
881 32 0.01
882 3 0.00
883 261 0.09
884 12 0.00
885 142 0.05
886 2 0.00
888 2 0.00
889 1 0.00
890 1 0.00
891 5 0.00
892 984 0.33
893 260 0.09
894 50 0.02
895 1 0.00
896 2 0.00
898 2 0.00
899 75 0.02
900 265 0.09
901 14 0.00
902 89 0.03
903 694 0.23
904 24 0.01
907 1 0.00
911 3 0.00
912 42 0.01
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (886 bp):
ACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
ACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCACAAGCCGGGGATCGCCGGGTCCC
CCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTTAGTCTGGTCTGATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGTGGCGGCGGGCACTACGTCGGCCAGA
GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
CTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTGAGAT
TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTG
TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
GCACCCATCGCACATCATGTGCGCACACCCCCCGGGCCCCCCGATCGTCGGAACCCCAATGCCGC
CGGTCAGGTTCTTCGACGATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
CAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAG
Found at i:19861288 original size:26 final size:26
Alignment explanation
Indices: 19861259--19861308 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19861249 CCGGTCCGAT
*
19861259 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19861285 CTTAGACTAGGAATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
19861309 CGTCTAAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19863504 original size:26 final size:26
Alignment explanation
Indices: 19863468--19863520 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19863458 CCGATCTGAT
*
19863468 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19863494 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19863520 C
1 C
19863521 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19864404 original size:26 final size:26
Alignment explanation
Indices: 19864375--19864427 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19864365 TCGGTCCGAT
*
19864375 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
*
19864401 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
19864427 C
1 C
19864428 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:19864583 original size:4 final size:4
Alignment explanation
Indices: 19864574--19864606 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
19864564 AACGAGCGAA
*
19864574 CGGG CGGG CGGG CGGG CGGA CGGG CGGG CGGG C
1 CGGG CGGG CGGG CGGG CGGG CGGG CGGG CGGG C
19864607 ACTACGTCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.03, C:0.27, G:0.70, T:0.00
Consensus pattern (4 bp):
CGGG
Found at i:19866188 original size:26 final size:26
Alignment explanation
Indices: 19866159--19866211 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19866149 CTGGTCCGAT
* *
19866159 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19866185 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
19866211 C
1 C
19866212 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19866365 original size:903 final size:901
Alignment explanation
Indices: 19863038--19868536 Score: 6272
Period size: 903 Copynumber: 6.1 Consensus size: 901
19863028 NNNNNNNNAA
* * * *
19863038 GAGTTTTGGCCACAAACATGGTAGATGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTC
1 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
19863103 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCGAAAAAAGTGTCCCCATTTCAGACA
66 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTGGAAAAAAGTGTCACCATTTCAGACA
* * *
19863168 CTTTAATGACTAACTGGCACCAAACCTGT-AAATTTCAAATGCTCTTTAA-GGGGTGTGAGTTCT
130 CTTTAATGGCT-ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* ** * *
19863231 CGAGGTTTGATGACAGATAGGGGGCCCAATAATAAGGACCAAGTACCAGCACCCATCACACATCA
194 AGAGGTTTGATGAGGGATAGGGGG-CCAAT-ATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
19863296 TGTGCGCACACACCCCCGACCCCCCCGATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGA
257 TGTGCGCACACCCCCCCGA-CCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGA
** ** * *
19863361 CAATGCTCCGACGATGCTTTGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCT
321 TGATGCT-C--CGA--------CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCC
* * ** * * * *
19863426 CGAGCCCAACATGTGCTACCACAACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTTCGT
375 CGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
* *
19863491 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
440 ATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTC
** * * * * * * ** * *
19863556 AACTTGCCAGAA-GGTCAGGATGCGCAAGCCGAGGATCGACCGGGTCCCCTTCTGTGTGCTACCA
505 AACCGGCCA-AAGGGGCGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTATCG
* * * * * * * *
19863620 ATCCTACTAC-CTCAACCCTCATTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCGTAA
569 ATCCTACTGCAGT-AAACCTCAATCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAA
* * * * * * *
19863684 GCCAATCGATGAAACCAGAAGACGGGCGAGCGGGCGGGCAGGCACTACGCCGGTCAGAGAAACGG
633 GCCAACCGACGAAA-C-G-AG-CGGGCGGGC-GACGGGCGGGCACTACGCCGGCCAGAGAGACGG
* * * *
19863749 GATGCGCAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCGTG
693 GATGCGCAAGCCATGGATCGATAGGGTGGTAGGT-GGTTTAGGCACATCTTCATATTTCTACGTG
* *
19863814 CCAATG-CATTTTTATGGCTTCTAAATTTGATACAATGGTCCCTTAAAGCCTTCA-GTGAAGTTT
757 CCAATGCCATTTTTATGGCTTGTAAA-TTCATACAATGGTCCCTT-AAGCCTTCACGTGAAGTTT
* ** * **
19863877 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCAAGATTTTT
820 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTT
*
19863942 TAAAAATTTTTT-GGAAT
885 T-AAAATTTTTTCGGAAG
* * * * *
19863959 GTGTTTTGGCCCCAAACTTGTTAGACGTGATCATTGTATTTTTGTTGGCATGCATAAAAAAATTT
1 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * * * *
19864024 AGCTAAAAACTCGAGGTGTACACGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACAC
66 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTGGAAAAAAGTGTCACCATTTCAGACAC
* *
19864089 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
131 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAG
* ** *
19864154 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCAGTCATCGCACATCATGTC
196 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * * *
19864219 CGCACA-CCCCTCGGCCCCTTCGATCGTCGAAACCCCAATGCTGCCGGTCAGGTTCTCCGACGAT
261 CGCACACCCCCCCGACCCC-CCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGATGAT
* * * * * *
19864283 GCTCCGATGATGGTACCCCGGCGAAGAAAAATGA-GGCACCAGGACCTGCCCGAGCCCAACATGT
325 GCTCCGACGATGGTGCCCCGACGAAGAAAAAT-ACGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * *
19864347 G-TGGCTGCAACCCTTGGT-TCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTG
389 GCT-ACCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * *
19864410 GGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTC-A---GCC----
452 GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCAAAG
*
19864467 --G-GGGA----T----C--GG-T---T--GGTCCCCCTCTGCGTGC--T-G----T-C-GC---
517 GGGCGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTATCGATCCTACTGCAGT
* ** * * *
19864501 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAACCGATGAAA
582 AAACCTCAATCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACC---G--A
* * *
19864566 CGAGCGAACGGGCGGGCGGGCGGGCGGACGGGCGGGCGGGCACTACGTCGGCCAAAGAGACGGGA
642 CGA---AA----CGAGCGGGCGGGC-GA----CGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * *
19864631 TGCGCAAGCCATGGATCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATCTTTCTACATGCC
695 TGCGCAAGCCATGGATCGATAGGGTGGTAGGT-GGTTTAGGCACATCTTCATATTTCTACGTGCC
* *
19864696 AATGTCATTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCACGTGAAGTTTCATG
759 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * *
19864761 GTAAGATGACTCGTTTTTTATTTTTTACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAA
824 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAA
19864826 ATTTTTTTC-GAAG
889 A-TTTTTTCGGAAG
**
19864839 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTCATTGGC-TGCACAAAAAAATTC
1 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
19864903 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCACCATTTCAGACAC
66 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTGGAAAAAAGTGTCACCATTTCAGACAC
* * *
19864968 TTTAATGGCTACTGGCCGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCG
131 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAG
* *
19865033 AGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACTAGCACCCATCGCACATCATGTG
196 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
19865098 CGCACACCCCCCTCGGCCCCCTCGATCGCCGGAACCCCAATGCCATCGATCAGGTTCTCCGACGA
261 CGCACACCCCCC-CGACCCCC-CGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGATGA
19865163 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
324 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * * *
19865228 GCTACCACAACCCTCGGTCCGGTCCGATCTTAGGCTAGGAATGAACTCCATATGCTTAGACTGTG
389 GCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
** * * * *
19865293 AATGAACTCTGTATGCCTAAGTCAACCCGA-AAAACGAGCGTGCGGGCGTTCAACCGGCCAGAGG
454 AATGAACTCCATATGCCTAAGTCAACCC-ACGAAACGAGCGTGCAGGCGCTCAACCGGCCAAAGG
* * * * * * *
19865357 GGTGGGATGCGTAA-CTCGAGGG-TCGGTCGGGTGCCCCTCTGCGTGCTATCGATCTTGCTGCCG
518 GGCGGGATGCGTAAGC-CG-GGGATCGATCGGGTCCCCCTCTACGTGCTATCGATCCTACTGCAG
* * * * *
19865420 TAACCCTCAGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCGAAGCCAACCGATGAA
581 TAAACCTCAATCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
19865485 ACGAGCGGGCGGGCAGACGGGTGGGCACTATGCCGACCAGAGAGACGGGATGAGCAAGCCGTGGA
646 ACGAGCGGGCGGGC-GACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGA
* ** **
19865550 TCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTTATATTTCTGTGTG-CAACCACCATTTTTAT
710 TCGATAGGGTGGTAGGTG-GTTTAGGCACATCTTCATATTTCTACGTGCCAA-TGCCATTTTTAT
*
19865614 GGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
773 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
19865679 TTTTTATTTTTCATGATTTTCAAAACTCTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
838 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* * *
19865743 GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAGAATTC
1 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
19865808 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTGGAAAAAAGTGTCCCCATTTCAGACAC
66 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTGGAAAAAAGTGTCACCATTTCAGACAC
* * *
19865873 TTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAATTGCACTTTAAGGGGGTGTGAGTTCTAG
131 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAG
* *
19865938 AGGTTTGATGAGGGATTGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTG
196 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * **
19866003 CGCACA-CCCCCCGGCCGCCCTGATCATCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGATGAT
261 CGCACACCCCCCCGACC-CCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGATGAT
* * *
19866067 GCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCTGCACATGCCTGAGCCCAGCATGTG
325 GCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * *
19866132 CCACCGTAACCCTCGATCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGA
390 CTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * *
19866197 ATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAACAGGCCAAAGGGG
455 ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCAAAGGGG
** ** * *
19866262 CGGGATGCGTAAGCCGGGGATCGGCCTAGTCCCCCTCTACGTACTATCGATCCTGCTGTC-GTAA
520 CGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTATCGATCCTACTG-CAGTAA
* *** * ** * * * * *
19866326 ACATTGGTCTGGTCCAATCTTAGACTGGGAATCAACTCCGTACGCCTAAGCCAACCAACAAAACG
584 ACCTCAATCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * * * * * *
19866391 GGCGGACGGGCGA---GCAGGCACTATGTCAGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGA
649 AGCGGGCGGGCGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGA
* * * *
19866453 TAGAGTGTTAGGTGGACTTAAGGCGCATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
714 TAGGGTGGTAGGTGG--TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
*
19866518 TGTAAATTCATACAATGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
777 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
19866583 TATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGAAAG
842 TATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* * * *
19866643 GATTTTTGGCCCCAAACTTGGTACACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTA
1 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
19866708 AGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACAC
66 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTGGAAAAAAGTGTCACCATTTCAGACAC
* * *
19866773 TTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
131 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAG
*
19866838 AGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
196 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * *
19866903 CGCGCA-CCCCCTGACCCCCCGATCGCCGAAACGCCAATGCCGCCGGTCAGGTTCTCTGGTGATG
261 CGCACACCCCCCCGACCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATG
* * * * * * * * *
19866967 CTCTGGCGATGGTGCTCGGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAACATGTGT
326 CTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
** * * *
19867032 TGTCGCAACCCTCGGTCTGGTTCGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAA
391 TACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* *
19867097 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAA-GGG
456 TGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCA-AAGGGG
* * * * * * * *
19867161 CGGGACGCGCAAGTCGGGGATCGATCGGGTCCACCTCTACGTGTTGTCGATCCTACTACAG-CAA
520 CGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTATCGATCCTACTGCAGTAAA
* * *
19867225 CCTTCAATCTGATCTGATCTTAGATTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATG
585 CC-TCAATCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* *
19867290 A----GC--G-GACGGGCGGCCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCATGGATCGA
649 AGCGGGCGGGCGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGA
19867348 TAGGGTGGTAGGTTGGTTTAGGCACATCTTCAT-TTCTCTACGTGCCAATGCCATTTTTATGGCT
714 TAGGGTGGTAGG-TGGTTTAGGCACATCTTCATATT-TCTACGTGCCAATGCCATTTTTATGGCT
*
19867412 TGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
777 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* *
19867477 TATTTTT--C-A---T---AA---TTT----TT---G------T-AACTTTTTTTGGAAG
842 TATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* * **
19867511 GTGTTTTAGG-ACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACACACAAAAAAATT
1 GAGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * *
19867575 CAGCTAAAAACTCGAAGTGTACGAGATTTTGTGGCCATTTGG-AAAAAGTGTCCCCATTTCAGAT
65 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTGGAAAAAAGTGTCACCATTTCAGAC
*
19867639 ACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
129 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
19867704 CA-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCAT
194 -AGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
19867768 GTGCGCACACCCCCCCGACCCCCCGATTGCCGGAACCCCAACGCCGTCGGTCAGGTTCTCTGATG
258 GTGCGCACACCCCCCCGACCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGATG
* ** *
19867833 ATGCTCCGACGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATG
323 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
19867898 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
388 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
*
19867963 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAATGAG
453 GAATGAA---C---T-C-----C-----AT--A-----T--GCCTAAGTCAACCCACGAAACGAG
* * * * * * * *
19868028 CCTGCAGGCGCTCAATCGACTAGAGGGGCGGGATGCATAAGCCGGGGATCGATCGGGTCCCTCTT
492 CGTGCAGGCGCTCAACCGGCCAAAGGGGCGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTC
* * ** * * * * * *
19868093 TGCATGCTGCCGATCCTACTGCTGCAACCCTCGATCT-AGTCTGATCTTAGACTGGGAATTAACT
557 TACGTGCTATCGATCCTACTGCAGTAAACCTCAATCTGA-TCTGATCTTAGACTAGGAATGAACT
* * * * * *
19868157 CCGTATGCCTAAGCCAACTGATGAAACGAGCGGGCGGCCGGGCAGGTGGGCACTACGCCGGCCAG
621 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GACGGGCGGGCACTACGCCGGCCAG
* *
19868222 AGAGACGGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTTGGTTTAGGTACATCTTCATATT
685 AGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG-TGGTTTAGGCACATCTTCATATT
** * * *
19868287 TCTGTGTGCCAATACCATTTTTATGGCTTGTAAATTAAAACAATGGTCCCTTAAGCCTTCACGTG
749 TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* *
19868352 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA-TTTTTACGGTTTGGG
814 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGG
**
19868416 ATTTTTTAAAATTTTTTCAAAAG
879 ATTTTTTAAAATTTTTTCGGAAG
* * *
19868439 GAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTGGTTGGCATACACAAAAAAAATT
1 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATT
*
19868504 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
65 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
19868537 CGCACACCTC
Statistics
Matches: 3949, Mismatches: 469, Indels: 312
0.83 0.10 0.07
Matches are distributed among these distances:
868 301 0.08
869 175 0.04
871 2 0.00
872 2 0.00
873 4 0.00
875 2 0.00
876 13 0.00
877 1 0.00
878 3 0.00
879 214 0.05
880 244 0.06
881 219 0.06
882 6 0.00
885 6 0.00
886 3 0.00
888 3 0.00
891 2 0.00
892 7 0.00
893 4 0.00
894 115 0.03
895 198 0.05
896 10 0.00
898 5 0.00
899 360 0.09
900 411 0.10
901 3 0.00
902 6 0.00
903 516 0.13
904 260 0.07
905 202 0.05
906 4 0.00
907 149 0.04
908 30 0.01
909 1 0.00
910 1 0.00
911 1 0.00
912 4 0.00
914 3 0.00
915 7 0.00
916 1 0.00
917 8 0.00
918 48 0.01
919 54 0.01
920 111 0.03
921 129 0.03
927 2 0.00
928 59 0.01
929 40 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTGGAAAAAAGTGTCACCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCCGACCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATG
CTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
TGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCAAAGGGGC
GGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTATCGATCCTACTGCAGTAAAC
CTCAATCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
CGGGCGGGCGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATA
GGGTGGTAGGTGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
Found at i:19867087 original size:26 final size:26
Alignment explanation
Indices: 19867058--19867110 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19867048 CTGGTTCGAT
*
19867058 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
19867084 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
19867110 C
1 C
19867111 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:19867956 original size:26 final size:26
Alignment explanation
Indices: 19867927--19868002 Score: 152
Period size: 26 Copynumber: 2.9 Consensus size: 26
19867917 CTGGTCCGAT
19867927 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19867953 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19867979 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
19868003 CGCCTAAGTC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19868730 original size:26 final size:26
Alignment explanation
Indices: 19868694--19868746 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19868684 CTGATCTGAT
* * *
19868694 CTTAGACTGGGAATGAATTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
19868720 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
19868746 C
1 C
19868747 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:19869610 original size:26 final size:26
Alignment explanation
Indices: 19869581--19869630 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
19869571 CCGATCTGGT
19869581 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
19869607 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
19869631 TGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:19870508 original size:26 final size:26
Alignment explanation
Indices: 19870479--19870528 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19870469 CTGGTCCGAT
19870479 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
19870505 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGAGAATGAACTCCGTA
19870529 AGCCTAAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:19871006 original size:26 final size:26
Alignment explanation
Indices: 19870977--19871029 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19870967 CCGGTCCGAT
*
19870977 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19871003 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19871029 C
1 C
19871030 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19872783 original size:26 final size:26
Alignment explanation
Indices: 19872754--19872806 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19872744 CCGGTCTGAT
19872754 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19872780 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19872806 C
1 C
19872807 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19873154 original size:159 final size:158
Alignment explanation
Indices: 19872780--19873154 Score: 504
Period size: 158 Copynumber: 2.4 Consensus size: 158
19872770 ACTCCGTATG
* *
19872780 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAACGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGC
* * * * *
19872845 CGGCCAGAGGGGCAGGATGCGCAACTCGGAGATCGGTCGGGTCCCCTCTGCATGCTATCTATCCT
66 AGGCCAGAGGGGCAGGATGCGCAACTCGGAGATAGGCCGGGTCCCCTCTACATGCTATCGATCCT
* *
19872910 ACTTTCGTAACCCTTGGTCTGGTTCAAT
131 ACTTTCGTAACCCTAGGTCTGGTCCAAT
* *
19872938 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGATCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGC
* * * *
19873003 AGGCCAGAGGGGCAGGATGCGTAAGTC-GAGGATAGGCCGGGTCCCCTTCTACGTGCTTTCGATC
66 AGGCCAGAGGGGCAGGATGCGCAACTCGGA-GATAGGCCGGGTCCCC-TCTACATGCTATCGATC
*
19873067 CTACTATT-GTAACCCTCAGTTCT-GTCCAAT
129 CTACT-TTCGTAACCCT-AGGTCTGGTCCAAT
* * * * *
19873097 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGC
19873155 AGGTGGGCGG
Statistics
Matches: 191, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
157 2 0.01
158 99 0.52
159 84 0.44
160 6 0.03
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGC
AGGCCAGAGGGGCAGGATGCGCAACTCGGAGATAGGCCGGGTCCCCTCTACATGCTATCGATCCT
ACTTTCGTAACCCTAGGTCTGGTCCAAT
Found at i:19874362 original size:26 final size:26
Alignment explanation
Indices: 19874326--19874399 Score: 121
Period size: 26 Copynumber: 2.8 Consensus size: 26
19874316 GTTGGCATGC
19874326 ACTGGGAATGAACTCTGTATGCTTAG
1 ACTGGGAATGAACTCTGTATGCTTAG
19874352 ACTGGGAATGAACTCTGTATGCTTAG
1 ACTGGGAATGAACTCTGTATGCTTAG
* * *
19874378 GCTGAGAATGAACTCCGTATGC
1 ACTGGGAATGAACTCTGTATGC
19874400 CTAAGTCAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (26 bp):
ACTGGGAATGAACTCTGTATGCTTAG
Found at i:19875282 original size:26 final size:26
Alignment explanation
Indices: 19875246--19875298 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19875236 CTGGTCCGAT
* *
19875246 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19875272 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19875298 C
1 C
19875299 ATGAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19876856 original size:26 final size:26
Alignment explanation
Indices: 19876820--19876872 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19876810 CTGGACCGAT
*
19876820 CTTAGACTGGGAATTAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
19876846 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
19876872 C
1 C
19876873 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:19876866 original size:744 final size:744
Alignment explanation
Indices: 19875357--19876871 Score: 2159
Period size: 744 Copynumber: 2.0 Consensus size: 744
19875347 TTGGTCTGAT
** * *
19875357 CTTAGACTGGGAATGAAC-CCGTATGCCTAAGCCAACCGACGAAACGAACAGGCGGGCGGGTAGG
1 CTTAGACTGGGAATGAACTCCGTATGAATAAGCCAACCGACGAAACGAACAGGCGAGCGGG-ACG
* * * *
19875421 CAGGCAGGCACTACGTCGGCTAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGCTGGT
65 CAGCCAGGCAATACGTCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGCTGGT
* ** *
19875486 GGGTTTAAGCACATCTTCATATTTCTGTGTGCCAATGGCATTTTTATGGCTTGTAAATTCAGAAA
130 GGGTTTAAGCACATCTTCAAATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAGAAA
* * *
19875551 ATGGTCCCGTAAGCTTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATT
195 ATGGTCCCGTAAGCCTTCACATGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
*
19875616 TTCGAAACCTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAAAAGGAATTTGGCCCCAAACTTG
260 TTCAAAACCTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAAAAGGAATTTGGCCCCAAACTTG
* * *
19875681 GTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTTAGCGAAAAACTCGAAGTGTA
325 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCGAAAAACTCGAAGTGTA
*
19875746 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGGAGCA
390 CAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGGAGCA
*
19875811 AACTGTAAAATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
455 AACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
19875876 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTC
520 GCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGACCCCCCC
** * * * * ***
19875941 GATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCTGGC
585 GATCACCGGAACCCAAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCAAC
* * *
19876006 GAAGAAAAAAGCGGCACCAACACATGCCCGAGCCCAGCATCTGCTGTAGCAACCCTCGATTAGGT
650 GAAGAAAAAAGCGGCACCAACACATGCCCGAGCCCAGCA-CTGCTCTACCAACCCTCGATTAGGA
* *
19876071 TCGATCTTAGACTGGGAATTAACTCCGTATA
714 CCGATCTTAGACTGGGAATTAACTCCCTATA
* * * * * *
19876102 TTTAGACTAGGAATGAACTCCTTATGAATAAGCCAACTGATGAAACGAACGGGCGAGCGGG-CG-
1 CTTAGACTGGGAATGAACTCCGTATGAATAAGCCAACCGACGAAACGAACAGGCGAGCGGGACGC
*
19876165 A-CCAGGCAATAC-TCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGG-TAGG
66 AGCCAGGCAATACGT-CGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGCT-GG
* * * * *
19876227 TGGGTTTAGGCAGATCTTCAAATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
129 TGGGTTTAAGCACATCTTCAAATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAGAA
* * *
19876292 AATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
194 AATGGTCCCGTAAGCCTTCACATGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * ** *
19876357 TTTTAAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACT
259 TTTCAAAACCTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAAAAGGA-ATTTGGCCCCAAACT
* * * *
19876422 TGGTAGGCGTGATCCTTGTATTTTTTTTGTCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
323 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCGAAAAACTCGAAGTG
* *
19876487 TACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAG
388 TACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGGAG
* *
19876552 CAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA-
453 CAAA-CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
19876616 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCATACATTATGTGCGCATACCCCCCCGACCC
517 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCGACCC
***
19876681 CCCCGATCACCGGAACCCAAATGTTGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCC
581 CCCCGATCACCGGAACCCAAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCC
* * *
19876746 CAACGAAGAAAAATA-CGGCACCAGCACATGCCCGAGCCCAGCA-TGTTCTACCATGACCCTCGG
646 CAACGAAGAAAAA-AGCGGCACCAACACATGCCCGAGCCCAGCACTGCTCTACCA--ACCCTCGA
*
19876809 TCT-GGACCGATCTTAGACTGGGAATTAACTCCCTATG
708 T-TAGGACCGATCTTAGACTGGGAATTAACTCCCTATA
19876846 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19876872 CCTAAGTCAA
Statistics
Matches: 679, Mismatches: 81, Indels: 21
0.87 0.10 0.03
Matches are distributed among these distances:
741 2 0.00
742 216 0.32
743 188 0.28
744 220 0.32
745 18 0.03
746 35 0.05
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (744 bp):
CTTAGACTGGGAATGAACTCCGTATGAATAAGCCAACCGACGAAACGAACAGGCGAGCGGGACGC
AGCCAGGCAATACGTCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGCTGGTG
GGTTTAAGCACATCTTCAAATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAGAAAA
TGGTCCCGTAAGCCTTCACATGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
TCAAAACCTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAAAAGGAATTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCGAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGGAGCAA
ACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGACCCCCCCG
ATCACCGGAACCCAAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCAACG
AAGAAAAAAGCGGCACCAACACATGCCCGAGCCCAGCACTGCTCTACCAACCCTCGATTAGGACC
GATCTTAGACTGGGAATTAACTCCCTATA
Found at i:19878419 original size:26 final size:25
Alignment explanation
Indices: 19878390--19878441 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
19878380 CCGATCCGAT
* *
19878390 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACGCC-TATG
19878416 CTTAGACAGGGAATGAACGCCTATG
1 CTTAGACAGGGAATGAACGCCTATG
19878441 C
1 C
19878442 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (25 bp):
CTTAGACAGGGAATGAACGCCTATG
Found at i:19883118 original size:26 final size:26
Alignment explanation
Indices: 19883089--19883141 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19883079 CCCGTCCAAT
19883089 CTTAAACTGGGAATAAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
*
19883115 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
19883141 C
1 C
19883142 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCCGTATG
Found at i:19883738 original size:904 final size:882
Alignment explanation
Indices: 19881585--19884009 Score: 3153
Period size: 890 Copynumber: 2.7 Consensus size: 882
19881575 GCGCATGCCA
* * *
19881585 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAGTGCCATTTT
1 TGGATCGATA-GG-CGTAGGTGGGTTTAGGCACATCTTCATATTTTTCCATGCCAATGCCATTTT
* * **
19881650 TATGGCTTTTAAATTCATACAATGGTCCTTTAAGCCTTCACAAGAAGTTTCATGGCAAGACGACT
64 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
19881715 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGA
129 CATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* *
19881780 AGGAGTTTTGGCCCCAAACA-TGGTAGATGCGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
194 AGGAGTTTTGG--CCAAAAATTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
19881844 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGA
257 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC-CCATTTCAGA
* * *
19881909 CACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTCTGAGTTC
321 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
19881974 TTGAGGTTTGATGAGGGATAGGGGGCCAATGTAATGGCCAAGTACCAGCACCCATCGCACATCAT
386 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
19882039 GTGCACACACCCCCCCGGCCCCTCCGATCGCCGGAACCCCAATGCCATTGGCCT-GGTTCTCTGA
451 GTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCC--TGG-TTAGGTTCTCTG-
* * *
19882103 CGATGCTCTGGTGATGGT-CCCC-GACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
512 CGATGCTCTGGCGATGGTGCCCCAG-CGAAGAAAAATGCGGTACCAGCACATGCCCGAGCCCAGC
* * ** * *** * *
19882166 ATGTGCTGCCACAACCCTCGATCTGGTCTGATATTAGACAAAGAA-AGAACTCCATATGCTTAGA
576 ATGTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATA-AACTCCGTATGCTTAAA
*
19882230 CTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCA
640 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCA
* * * * *
19882295 TAGAGGCGAGATACGCAAGCCAGGGATCAGCCAGGTCCCCCTCCACGTGCTGGCGATCCTGCTGC
705 GAGAGGCGAGATACACAAACCAGGGATCAGCCAGGTCCACCTCCACGTGCTCGCGATCCTGCTGC
* * * *
19882360 CACAACCCACGTGCTGGCGAATGAACTCCGTACTCCTAAGCCAACCGATGGAACTAGCAGGCGGG
770 CACAACCCACGTGCTGGCGAATGAACTCCGTACTCCTAAGCCAACCGACGAAACGAGCAGGCGGA
* *
19882425 CGGGCGGGCTGGCATTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
835 CGGGCGGGCGGGCATTACGCCGGCCAGAGAGACGGGATGCACAAGCCG
* * * ***
19882473 TGGATCGATAGAGTGATAGGTGGGTTTAGGCACATCTCCACATTTTTCTGCATTTGAATGCCATT
1 TGGATCGATAG-GCG-TAGGTGGGTTTAGGCACATCTTCATATTTTTC--CATGCCAATGCCATT
*
19882538 TTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
62 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
19882603 CTCCTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
127 CTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * *
19882668 GAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
192 GAAGGAGTTTTGG-CCAAAAATTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
19882733 CTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTTCCATTTCAG
256 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG-TCCCATTTCAG
19882798 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
320 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
19882863 CTCAAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCACATCA
385 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
*
19882928 TGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTTAGGTTCTCTAG
450 TGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCC-T-GGTTAGGTTCTCT-G
* * *
19882993 CGATGCTCCGGCGATGGTGCCCCAGCGAAGAAAAATGCGGTACCAGTACATGCTCGAGCCCAGCA
512 CGATGCTCTGGCGATGGTGCCCCAGCGAAGAAAAATGCGGTACCAGCACATGCCCGAGCCCAGCA
* * * *
19883058 TGTGCTGTCGCAACCCTCGGTCCCGTCCAATCTTAAACTGGGAATAAACTCCGTATGCTTAAACT
577 TGTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATAAACTCCGTATGCTTAAACT
* * * *
19883123 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCTCTCAGTCGGTCAGA
642 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGA
* * * * * * ****
19883188 G-GGCGGGATGCACAAATCAGGGATC-GATCGGGTCCACTTCTGTTTGC-CGCTGATCCTGCTAC
707 GAGGCGAGATACACAAACCAGGGATCAG-CCAGGTCCACCTCCACGTGCTCGC-GATCCTGCT--
* * *
19883250 CGTAACCCTCAATCCTGTTCGATCTTAGACTGG-GAATGAACTCCGTA-TGCCTAAGGCAACCGA
768 -G----CCACAA-CC----C-A-CGT-G-CTGGCGAATGAACTCCGTACT-CCTAAGCCAACCGA
* * * *
19883313 CGAAACGAGCGGGCGGACGGGCGGGCGGGCTTTACGCCGGCCAGAGAGATGGGATGCACAGGCCG
818 CGAAACGAGCAGGCGGACGGGCGGGCGGGCATTACGCCGGCCAGAGAGACGGGATGCACAAGCCG
* **
19883378 TGGATCGATAGGCCGTAGGTGGGTTTAGGTACATCTTCATATTTTTCCATGCCAATGGAATTTTT
1 TGGATCGATAGG-CGTAGGTGGGTTTAGGCACATCTTCATATTTTTCCATGCCAATGCCATTTTT
* * * *
19883443 ATGACTTGTAAATTCATACAATGGTCCGTTCAGCCTTCACGTGAAGTTTCATGGCAAGTCGACTC
65 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
19883508 ATTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAA
130 ATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
*
19883573 GGAGTTTTGGCCAAAAAAAGTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
195 GGAGTTTTGGCC--AAAAA-TTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
19883638 TTCAGCTAAAAACTCGAATTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCAATTTCAGA
257 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC-ATTTCAGA
* * *
19883703 CGCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGCA-TG
321 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG-AGTT
*
19883767 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCA
385 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * * * * *
19883832 AGTGGGCACA--CCCCCTG-CCCCCCGATAGCCAGAACCCC-A---CTGATCAGGTACTCCGGCA
450 TGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCTGGTTAGGTTCT-CTGCG
* * * *
19883890 ATGCTCTGGCGATGGTG-CCTAACGAAGAAAAATACGGCT-CTAGCACATGCCCGAGCCCAGCAT
514 ATGCTCTGGCGATGGTGCCCCAGCGAAGAAAAATGCGG-TACCAGCACATGCCCGAGCCCAGCAT
*
19883953 GTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
578 GTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATAAACTCCGTATGC
19884010 CTAAGCCAAT
Statistics
Matches: 1346, Mismatches: 152, Indels: 72
0.86 0.10 0.05
Matches are distributed among these distances:
887 2 0.00
888 40 0.03
889 10 0.01
890 476 0.35
891 151 0.11
892 2 0.00
893 1 0.00
894 90 0.07
895 27 0.02
896 2 0.00
897 6 0.00
898 2 0.00
900 1 0.00
901 20 0.01
902 149 0.11
903 7 0.01
904 260 0.19
905 96 0.07
906 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (882 bp):
TGGATCGATAGGCGTAGGTGGGTTTAGGCACATCTTCATATTTTTCCATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA
TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
GAGTTTTGGCCAAAAATTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCTGGTTAGGTTCTCTGCGATGCTCT
GGCGATGGTGCCCCAGCGAAGAAAAATGCGGTACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
ACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATAAACTCCGTATGCTTAAACTGGGAATGAA
CTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGAGGCGAGA
TACACAAACCAGGGATCAGCCAGGTCCACCTCCACGTGCTCGCGATCCTGCTGCCACAACCCACG
TGCTGGCGAATGAACTCCGTACTCCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCGGGCGG
GCATTACGCCGGCCAGAGAGACGGGATGCACAAGCCG
Found at i:19884733 original size:26 final size:26
Alignment explanation
Indices: 19884695--19884746 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19884685 CCGGTCCGAT
* *
19884695 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19884721 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19884747 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19886338 original size:25 final size:26
Alignment explanation
Indices: 19886310--19886358 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19886300 CTGGTCCGAT
19886310 CTTAGACTG-GAATGAACTCCGTACG
1 CTTAGACTGAGAATGAACTCCGTACG
19886335 CTTAGACTGAGAATGAACTCCGTA
1 CTTAGACTGAGAATGAACTCCGTA
19886359 TACGTAAGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTACG
Found at i:19887248 original size:26 final size:26
Alignment explanation
Indices: 19887212--19887264 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19887202 CTGGTCCGAT
*
19887212 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19887238 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19887264 C
1 C
19887265 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19887560 original size:903 final size:898
Alignment explanation
Indices: 19885595--19889010 Score: 4475
Period size: 869 Copynumber: 3.8 Consensus size: 898
19885585 GGTCCTATCC
19885595 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G--GGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGC
* * * * ** *
19885656 GGGCGGGCACTTCGCCGGACAGAGAGATGGGATGCG-AAGCCCTGGATAAATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGATGGTAGGTG
*
19885720 GGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
131 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * *
19885785 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGATTTATTTTTTATTTTTCATGAATT
196 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACG-ATT
** * *
19885850 TTGATCCTTTTTGCGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
260 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
*
19885915 GTAGACGTGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGCTAAAAACTC-AACGTGT
325 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAA-GTGT
* * * * * *
19885979 AAAAGATTTTGTGACCATTTGAAAAGAGTGTCCCCTTTTCAGACACTTTAATAGCTACCGACAGA
388 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGA
* * *
19886044 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTGGATGAGGGATAGG
453 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
19886109 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCCGG-CCCC
518 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* * *
19886173 CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCC-AGTGATGGTGCCCC
583 CCGATCGCCGGAACCCCAATGCCGTCGGTAAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCC
* * *
19886237 GACGAAGAAAAATGCGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCT
647 GGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCT
* *
19886302 GGTCCGATCTTAGACTGGAATGAACTCCGTACGCTTAGACTGAGAATGAACTCCGTATACGTAAG
712 GGTCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTG-GAATGAACTCCGTATGCGTAAG
* * * *
19886367 TCAACCCACAAAACGAGCGTACGGGCGTTCAGCCGGCCAGAGGGGCAGGATGCGCAAGC-CGCGG
776 TCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTAG-GG
* * ** *** * * *
19886431 ATCGATTGGGTCCCCCTCTACGTGCTACCAATCCTGCTATTACAACCCTCAATCTAAT-T
840 ATCGATCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCGCAA-CCTTAATCCAGTCT
* * *
19886490 CGATCTTAGACTGGGAATGAACTCCGTATGCCTCATCCAACCGACGAAACGAGATGGGCGGGCAG
1 -GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-CGGGCGGGCAG
* * *
19886555 GCGGGCGGGCACTACGTCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGG-TGATAGG
64 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGATGGTAGG
* * *
19886619 TGGGTTTAGGCACATCTCCATATTTCTGCTTGCCAATGCCGTTTTTATGGCTTGTAAATTCATAC
129 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
19886684 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTTTATTTTTCACGAT
194 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGAT
** * * * *
19886749 TTTGGATCCTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGCCCCAAACA
259 TTT-GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* *
19886814 TGGTAGACATGATCCTTGTAGTTTTT-TTGGTATGCACAAAAAATTCAGCTAAAAACTCGAAGTG
323 TGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
19886878 TACAAGATTTTGTGACCATTTGAAAAAGGTATCCCCATTTTAGACACTTTAATGGCTACTGGCAG
387 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
19886943 AAAACCTGTAAAATCTCAAATGCTCATTAAGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAG
452 AAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
19887008 GGGACCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCC
517 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCC
* * * * * * * *
19887073 CCCCGATCGTCGAAACCCCAATACCGTCAGTAACGTTCTCCAACGATGCTTCGGCGATGGTGCCC
581 CCCCGATCGCCGGAACCCCAATGCCGTCGGTAAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* * * *
19887138 TGGCGAAGAAAAATATGGCACCAGCACGTGCCCGAGCCCAGCATGTGCTATCGCAACCCTCGGTC
646 CGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTC
* *
19887203 TGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
711 TGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCGTA
* * *
19887268 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGTGGGATGCGCAAGCTAGG
774 AGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTAGG
* * * * *
19887333 CATCAATCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGTAACCTTTGATCCAGTCT
839 GATCGATCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCGCAACC-TTAATCCAGTCT
* * *
19887394 GATCTTAGACTGGGAATGAACTCTGTATCCCTAAGCCAACCGATGAAACGAGCGGGCGGGCAGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGC
* * *
19887459 GGGCGGGCACTACGCCGGCCAAAGAGACGGAATGCGCAAGCCATGGATCGATAGGATGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGATGGTAGGTG
* ** *
19887524 GGTTTAGGCACATCTTTATATTTCTGTGTTCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
131 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
19887589 TGGTCCCTTAAGCCTTCACATGAAGTTTCACGGCAAGACGACTCGTTTTTTATTTTTCACGATTT
196 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGA-TT
* * * * **
19887654 TTGAAACTTTTTACGGTT-TAGGATTTTTTTAAATTTTTTCGAAAGGATTTTTTACCCCAAACTT
260 TTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * *
19887718 GGTAGATGTGATCCTTGTATTTTTATTGGCATGCACAAAACAATTCAGCTAAAAACTTGAAGTGT
324 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGT
* ** * * *
19887783 ACAAGATTTTGTGACCGTTTGAAAAAAGTGTTTCCATTTCAGACACTTTAATGCCAACTGGCAGC
388 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGA
* * *
19887848 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGCTTGACGAGGGATAGG
453 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
19887913 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGAGCACACCCCCCGGCCCCC
518 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* * * *
19887978 CCAACCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
583 CCGATCGCCGGAACCCCAATGCCGTCGGTAAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* * * * **
19888043 GTGATGAAAAATACGACACCAGCACATGCCCGAGCCAAGCATGTGCTTTCGCAACCCTCGGTCTG
648 GCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTG
* *
19888108 GTTCGATC-T----T---A-G-A---C-TA-G----GA---G--TGAACTCTGTATGCGTAAGTC
713 GTCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGAATGAACTCCGTATGCGTAAGTC
* * * *
19888149 AACCCACGAAACAAGCGTACGGTCGCTCAGCCGGCCAGAGTGGCGGGATGCGCAAG-TCGGGGAT
778 AACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCT-AGGGAT
* ** ** * * * * *
19888213 TGGCCGGGTCCCCCTCTACGTGCTG-TCGATCCTATTGCCGCAACCCTCAGTTCGGTCT
842 CGATCGGGTCCCCCTCTACGTGCTGCT-GATCCTGCTACCGCAA-CCTTAATCCAGTCT
* *
19888271 GATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCGATGAAACGAGCGGGCGGGCA---
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGC
* * *
19888333 -----GGCACTACGTCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATA-AAGTGGTAGGT
66 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGA-TGGTAGGT
* *
19888392 AGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
130 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
19888457 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATT
195 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATT
* * * *
19888522 TTCAAAACTTTTTACGGTTCGAGACTTTTTAAAATTTTTTCGGAAGTAGTTTTGTCCCCAAACTT
260 TT-GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
*
19888587 GGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAACAAATTCAGCTAAAAACTCGAAGTGT
324 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA-AAATTCAGCTAAAAACTCGAAGTGT
* *
19888652 ACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
388 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGA
19888717 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
453 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
19888782 GGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCC-GACCC
518 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGGCCCC
** * *** * ** * ** *
19888846 CCCGATCATCGGAACCCTAATGCTACCTGTAAAATTCTCTGGTGATGCTCTGACGATGGTGCCCC
582 CCCGATCGCCGGAACCCCAATGCCGTCGGTAAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* * * * * *
19888911 GAG-AAAGAAAAATGCTGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTC
647 G-GCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTC
* * * *
19888975 CGGTCCGATGTTATAGTGGGAATGAACTCCGTATGC
711 TGGTCCGATCTTAGACT-GGAATGAACTCCGTATGC
19889011 CTAAGCCAAC
Statistics
Matches: 2210, Mismatches: 262, Indels: 106
0.86 0.10 0.04
Matches are distributed among these distances:
868 5 0.00
869 563 0.25
870 8 0.00
874 1 0.00
876 2 0.00
877 171 0.08
878 3 0.00
879 2 0.00
880 1 0.00
883 3 0.00
884 2 0.00
885 1 0.00
887 1 0.00
888 2 0.00
889 1 0.00
892 1 0.00
893 1 0.00
894 1 0.00
896 50 0.02
897 4 0.00
898 1 0.00
899 1 0.00
900 195 0.09
901 254 0.11
902 221 0.10
903 520 0.24
904 195 0.09
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGC
GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGATGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTT
TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
ATCGCCGGAACCCCAATGCCGTCGGTAAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCG
AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTC
CGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGAATGAACTCCGTATGCGTAAGTCAAC
CCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTAGGGATCGAT
CGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCGCAACCTTAATCCAGTCT
Found at i:19890294 original size:713 final size:711
Alignment explanation
Indices: 19888248--19890301 Score: 3038
Period size: 713 Copynumber: 2.9 Consensus size: 711
19888238 TCGATCCTAT
** * * *
19888248 TGCCGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCG
1 TGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * *
19888313 ATGAAAC--GA--GCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATACGCAAGCCGTGG
66 ATGAAACGAGAGGGCGGACGGGCGGGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGG
** * *
19888374 ATCGATAAAGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
131 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
19888439 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCAT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* ** * *
19888504 TTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTC-GAGACTTTTTAAAATTTTTTCGGAAG
261 TTTCTATTTTTCACGATTTTTGAAAC-TTTTACGGTTCAG-GATTTTTTAAAATTTTTTTGGAAG
* * * *
19888568 TAGTTTT-GTCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAACAAATT
324 GAGTTTTGGT-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
*
19888632 CAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
388 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
19888697 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
453 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTC
* *
19888762 GAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
518 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGT
* * * * * *
19888827 GCGCACACCACCCCGACCCCCCGATCATCGGAACCCTAATG-CTACCTGTAAAATTCTCTGGTGA
583 GCGCACACC-CCCCGA-CCCCCGATCGTCAGAACCCCAATGTC-GCCGGTAAAATTCTCCGGTGA
*
19888891 TGCTCTGACGATGGTGCCCCGAGAAAGAAAAATGCTGCACCAGCACATGCCCGAGCCCAGCATGT
645 TGCTCCGACGATGGTGCCCCGAGAAAGAAAAATGCTGCACCAGCACATGCCCGAGCCCAGCATGT
19888956 GC
710 GC
* * * *
19888958 TGCCGTAACCCTTGGTCCGGTCCGATGTTATAGTGGGAATGAACTCCGTATGCCTAAGCCAACCG
1 TGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * *
19889023 ATGAAACGAGCGGGCGACTGAGCGGG-GTGGCACTACT-CCAGCCAAAGAGACGGGATGCACAAG
66 ATGAAACGAGAGGGCG---GA-CGGGCG-GGCACTA-TGCCAGCCAGAGAGACGGGATGCGCAAG
*
19889086 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTGCATGCCAATGCCAT
125 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
19889151 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAGGACG
190 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * **
19889216 ACTCGTTTTCTATTTTTCATGATTTTTGGAACTTTTCACGGTTCAGGATTTTTTAATTTTTTTTT
255 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT-ACGGTTCAGGATTTTTTAAAATTTTTTT
* * *
19889281 GGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTT-TATTTTTTTTGGTATGCAC-AAAA
319 GGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* * * * * *
19889344 AATTCAACAAAAAACTCGAACTGTACAAGTTTTTGTGACCATTTCAAAAAAGTGGCCCCATTTCA
384 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
19889409 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
449 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
19889474 TGTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTACTAGCACCCATCGCTCATC
514 TGTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATC
* * * * *
19889539 ATCTGCGCACACCCCCCTGACCGCCTCGATCGCCAAAACCCCAATGTCGCCGGTCAGATTCTCCG
579 ATGTGCGCACACCCCCC-GACC-CC-CGATCGTCAGAACCCCAATGTCGCCGGTAAAATTCTCCG
** *
19889604 GTGATGCTCCGGTGATGGTGCCCCG-GCAAAGAAAAAT-CTGGCACCAGCACATGCCTGAGCCCA
641 GTGATGCTCCGACGATGGTGCCCCGAG-AAAGAAAAATGCT-GCACCAGCACATGCCCGAGCCCA
19889667 GCATGTGC
704 GCATGTGC
* *
19889675 TGCCGCAACCCTTGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACTG
1 TGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * *
19889740 ACGAAACGAGAGGGCGGACGGGCGGGCACTATGCCCGCCAGAGAGACAGGATGCGCAAGCCGTGG
66 ATGAAACGAGAGGGCGGACGGGCGGGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * **
19889805 ATCGATAGGGTGGTGGGTGGGTTTAGGGATTTCTTCATATTTCTGCATGCCAATGCCATTTTTAT
131 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
19889870 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
*
19889935 TTTCTATTTTTCACGATTTTTGAAACATTTTACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGG
261 TTTCTATTTTTCACGATTTTTGAAAC-TTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGG
* * *
19890000 ATTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCGTGCACAAAAAAAATCA
325 AGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
* * *
19890065 GTTAATAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGACACT
390 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
19890130 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCGA
455 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCGA
19890195 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGC
520 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGC
*
19890260 GCACACCCCCC-AGCCCCCGGATTGTCAGAACCCCAATGTCGC
585 GCACACCCCCCGA-CCCCC-GATCGTCAGAACCCCAATGTCGC
19890302 ACCAGCACAT
Statistics
Matches: 1204, Mismatches: 114, Indels: 49
0.88 0.08 0.04
Matches are distributed among these distances:
710 63 0.05
712 3 0.00
713 271 0.23
714 29 0.02
715 209 0.17
716 205 0.17
717 185 0.15
718 237 0.20
719 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (711 bp):
TGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ATGAAACGAGAGGGCGGACGGGCGGGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACGATTTTTGAAACTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGA
GTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCG
CACACCCCCCGACCCCCGATCGTCAGAACCCCAATGTCGCCGGTAAAATTCTCCGGTGATGCTCC
GACGATGGTGCCCCGAGAAAGAAAAATGCTGCACCAGCACATGCCCGAGCCCAGCATGTGC
Found at i:19894459 original size:718 final size:714
Alignment explanation
Indices: 19892089--19894651 Score: 3707
Period size: 718 Copynumber: 3.6 Consensus size: 714
19892079 CTGTGTTCAG
* * * *
19892089 TGGTCCCTTAAGCCTTCACATGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTCCACGATTT
1 TGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCATGATTT
* * * * *
19892154 TC-AAACTTCTTGCGATTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
66 TCAAAACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTTCAAAAGGAGTTTTGTCCCCAAACAT
* * *
19892218 GGTAGACGTGATCCATGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGT
130 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGT
19892283 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
195 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
**
19892348 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATT
260 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
19892413 GGGCCAATATAAGAGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCTC
325 GGGCCAATATAAG-GCCAAGTACAAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCC
** * * * **
19892478 CCGATCATCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGACGATGCTCCGACGATACTGCCCCG
389 CCGATCGCCGGAACCCCAATACCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCG
* * * * * * *
19892543 ATAAAGAAAAATACGACACTAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCTGTCCT
454 ATGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCG
* * *
19892608 ATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCAACGAAACGA----GC-G-G
519 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGAG
* * *
19892667 GCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGG
584 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGG
* **
19892732 TGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGAAATTTTTATGGCTTGTAAATTCATAC
649 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTATGGCTTGTAAATTCATAC
19892797 AA
713 AA
* * * *
19892799 TGGTTCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTCCATGATTT
1 TGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCATGATTT
** * * * ** * *
19892864 TTGAAACTTTTTGCGGTTTGGGTTTTTTTTAAATTTTTTCGGAAGGAGTTTTGGT-CCGAAACTT
66 TCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTT-GTCCCCAAACAT
* * * *
19892928 GGTAGACGTGATCATTGTATTTTTTTTTGGCATGCACAAAAAAATTCATCTAAAAACTCGAAGTG
130 GGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTG
* *
19892993 TACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT-GCTA
194 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC-A
* *
19893057 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGGGGATA
258 GCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
19893122 GGGGGCCAATATAAGGCCCAAGTACCAGCATCCATCGCACATCATGTGCGCACACTCCCCCAGCC
323 GGGGGCCAATATAAGG-CCAAGTACAAGCACCCATCACACATCATGTGCGCACAC-CCCCCGGCC
* * ** * *
19893187 CCCCGGATCGTCGGAACCCCAATATTGTCGTTTAGGTTCTCCGATGATGCTCCGACGATGGTGCC
386 CCCCCGATCGCCGGAACCCCAATACCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCC
**
19893252 CCGATGAAGAAAAATACGGCACCAGCACATGCTCGATTCCAGCATGTGCTGCCGTAACCCTCGGT
451 CCGATGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGGT
*
19893317 CCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
516 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* *
19893382 GA--CGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCACAAGCCGAGGATCGATAGGGTGGT
581 GAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGT
* *** *
19893445 AGGTGGGTTTAGGCACAACTTCATATTTCTATGTGCCAATGCCATATTTATGGCTTGTACATTCA
646 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT-TTTATGGCTTGTAAATTCA
19893510 TACAA
710 TACAA
* * *
19893515 TAGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTT
1 TGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCATGATTT
* * * * *
19893580 TCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAA-CATTTTTGTCCCCAAACAT
66 TCAAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTTCAAAAGGAGTTTTGTCCCCAAACAT
* * * *
19893644 TGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATATCACCTAAAAACTTGAAGTGT
130 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGT
* * *
19893709 ACAAGATTTTGTGGCCATTCGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTACTGGCAGC
195 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * *
19893774 AAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTGTGACTTCTCGAGGATTGATGAGGGATAGG
260 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* ** **
19893839 GGGCCAATATAAAGGCCAAGTAAAAGCACCCATTGCACATCATGCACGCACACCCCCCCGGCCCC
325 GGGCCAATAT-AAGGCCAAGTACAAGCACCCATCACACATCATGTGCGCACA-CCCCCCGGCCCC
* * * *
19893904 CCCAATCGCCGGAACCCCAATACCGTCGGTCAGGTTCTCCGGTGATGCTCCAATGATGGTGCCCC
388 CCCGATCGCCGGAACCCCAATACCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCC
* *
19893969 -AGTGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAACATGTGCTGCCGTAACCCTCGGTT
453 GA-TGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTC
*
19894033 CGGTCCGATCTTAGACTGGGAATGGACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
517 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-G
** * *
19894098 GAGGCGGGCGGGCACTACGTTGGCCAAAGAGACGGGATGCCCAAGCCGTGGATCGATAGGGTGGT
581 GAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGT
*
19894163 AGGTGTGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTAATGGCTTGTAAATTCA
646 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT-ATGGCTTGTAAATTCA
*
19894228 TAAAA
710 TACAA
* * *
19894233 TGGTCCCCTAAGCCTTCACGTAAAGTTTCATGGCAAGACGAATCGTTTTCTATTTTTCATGATTT
1 TGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCATGATTT
* * *
19894298 CCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAAAAGGTGTTTTGTCCCCAAACATG
66 TCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGTCCCCAAACATG
19894363 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTA
131 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTA
** * * *
19894428 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTGGACACTTTACTGACTACCGGCAGCA
196 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
19894493 AACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATGGGG
261 AACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
19894558 GGCCAATATAAGGGCCAAGTATAAGCACCCATCACACATCATGTGCGCACA-CCCCCGG-CCCCC
326 GGCCAATATAA-GGCCAAGTACAAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCC
19894621 CGATCGCCGGAACCCCAATACCGTCGGTCAG
390 CGATCGCCGGAACCCCAATACCGTCGGTCAG
19894652 AGAGACGAGA
Statistics
Matches: 1654, Mismatches: 174, Indels: 45
0.88 0.09 0.02
Matches are distributed among these distances:
710 116 0.07
711 230 0.14
712 171 0.10
714 1 0.00
715 422 0.26
716 248 0.15
717 24 0.01
718 442 0.27
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (714 bp):
TGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCATGATTT
TCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGTCCCCAAACATG
GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTA
CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
AACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGCCAAGTACAAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCC
GATCGCCGGAACCCCAATACCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGAT
GAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGT
CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGAGGC
GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTATGGCTTGTAAATTCATACAA
Found at i:19895125 original size:527 final size:530
Alignment explanation
Indices: 19894125--19895169 Score: 1650
Period size: 527 Copynumber: 2.0 Consensus size: 530
19894115 CGTTGGCCAA
* *
19894125 AGAGACGGGATGCCCAAGCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATT
1 AGAGACGAGATGCCCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* *
19894190 TCTGCATGCCAATGCCATTTTAATGGCTTGTAAATTCATAAAATGGTCCCCTAAGCCTTCACGTA
66 TCTACATGCCAATGCCATTTTAATGGCTTGTAAATTCATAAAATGGTCCCCTAAGCCTTCACATA
* *
19894255 AAGTTTCATGGCAAGACGAATCGTTTTCTATTTTTCATGATTTCCAAAACTTTTTGCGGTTTGGG
131 AAGTTTCATGGCAAGACGAATCGTTTTCTATTTTTCACGATTTCCAAAACTTTTTACGGTTTGGG
**
19894320 ATTTTTTAAAATTTTTTCAAAAGGTGTTTTGTCCCCAAACATGGTAGACGTGATCCTTGTATTTT
196 ATTTTTTAAAATTTTTTCAAAACATGTTTTGTCCCCAAACATGGTAGACGTGATCCTTGTATTTT
* *
19894385 TGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
261 TATTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAA
* *
19894450 AAAAGTGTCCCCATTTTGGACACTTTACTGACTACCGGCAGCAAACCTATAAAATCTCAAATGCT
326 AAAAGTGTCCCCATTTTAGACACTTTAATGACTACCGGCAGCAAACCTATAAAATCTCAAATGCT
* * * * * *
19894515 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATGGGGGGCCAATATAAGGGCCAAGTAT
391 CTTTAAGGGGGTGTGACTTCTCAAGGATTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTAA
** *
19894580 AAGCACCCATCACACATCATGTGCGCACA-CCCC-CGG-CCCCCCGATCGCCGGAACCCCAATAC
456 AAGCACCCATCACACATCATGCACGCACACCCCCTCGGCCCCCCCGATCACCGGAACCCCAATAC
19894642 CGTCGGTCAG
521 CGTCGGTCAG
* **
19894652 AGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGTTACATCTTCATATT
1 AGAGACGAGATGCCCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
** * * * *
19894717 TCTACATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACATG
66 TCTACATGCCAATGCCATTTTAATGGCTTGTAAATTCATAAAATGGTCCCCTAAGCCTTCACATA
* *
19894782 AAGTTTCATGGCAAGAC-AACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGG
131 AAGTTTCATGGCAAGACGAA-TCGTTTTCTATTTTTCACGATTTCCAAAACTTTTTACGGTTTGG
* *
19894846 GATTTTTTGAAATTTTTTCGAAAACAT-TTTTGTCCCCAAACATTGTAGACGTGATCCTTGTATT
195 GATTTTTTAAAATTTTTTC-AAAACATGTTTTGTCCCCAAACATGGTAGACGTGATCCTTGTATT
* *
19894910 TTTATTGGCATGCACAAAAAAAATCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGGCCATTCG
259 TTTATTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCG
* * * *
19894975 AAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATG
324 AAAAAAGTGTCCCCATTTTAGACACTTTAATGACTACCGGCAGCAAACCTATAAAATCTCAAATG
*
19895040 CTCTTTAAGTGGGTGTGACTTCTCAAGGATTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGT
389 CTCTTTAAGGGGGTGTGACTTCTCAAGGATTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGT
**
19895105 AAAAGCACCCATTGCACATCATGCACGCACACCCCCTCGGCCCCCCCGATCACCGGAACCCCAAT
454 AAAAGCACCCATCACACATCATGCACGCACACCCCCTCGGCCCCCCCGATCACCGGAACCCCAAT
19895170 GCCGCCGATC
Statistics
Matches: 470, Mismatches: 43, Indels: 7
0.90 0.08 0.01
Matches are distributed among these distances:
526 2 0.00
527 433 0.92
528 9 0.02
529 3 0.01
530 23 0.05
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (530 bp):
AGAGACGAGATGCCCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
TCTACATGCCAATGCCATTTTAATGGCTTGTAAATTCATAAAATGGTCCCCTAAGCCTTCACATA
AAGTTTCATGGCAAGACGAATCGTTTTCTATTTTTCACGATTTCCAAAACTTTTTACGGTTTGGG
ATTTTTTAAAATTTTTTCAAAACATGTTTTGTCCCCAAACATGGTAGACGTGATCCTTGTATTTT
TATTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAA
AAAAGTGTCCCCATTTTAGACACTTTAATGACTACCGGCAGCAAACCTATAAAATCTCAAATGCT
CTTTAAGGGGGTGTGACTTCTCAAGGATTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTAA
AAGCACCCATCACACATCATGCACGCACACCCCCTCGGCCCCCCCGATCACCGGAACCCCAATAC
CGTCGGTCAG
Found at i:19896024 original size:707 final size:706
Alignment explanation
Indices: 19894652--19896604 Score: 2955
Period size: 707 Copynumber: 2.8 Consensus size: 706
19894642 CGTCGGTCAG
19894652 AGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGTT-ACATCTTCATAT
1 AGAGACG-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA-TTCACATCTTCATAT
* * *
19894716 TTCTACATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACAT
64 TTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
*
19894781 GAAGTTTCATGGCAAGAC-AACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTG
129 GAAGTTTCATGGCAAGACGAA-TTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCG
* *
19894845 GGATTTTTTGAAATTTTTTCGAAA-ACATTTTTGTCCCCAAACATTGTAGACGTGATCCTTGTAT
193 GGATTTTTTAAAATTTTTTCGAAAGA-ATTTTTGTCCCCAAACATGGTAGACGTGATCCTTGTAT
* *
19894909 TTTTATTGGCATGCACAAAAAAAATCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGG-CCATT
257 TTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG-GGACCATT
* *
19894973 CGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAA
321 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAA
* * * *
19895038 TGCTCTTTAAGTGGGTGTGACTTCTCAAGGATTGATGAGGGATAGGGGGCCAATATAAAGGCCAA
386 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAA
* * ** * *
19895103 GTAAAAGCACCCATTGCACATCATGCACGCACACCCCCTCGGCCCCCCCGATCACCGGAACCCCA
451 GTACAAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCA
* * * * * * *
19895168 ATGCCGCCGATCAGGTTCTCCGACGATGCTCCGGTGATGGTACCCCGATGAAGAAAAATGCGGCA
516 ATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTACCCCGACGAAGAAAAATACGGCA
* * * **
19895233 CCAGCACATGCTCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
581 CCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAATCCGGTCCGATCTTAGACTGGG
* * *
19895298 AATGGACTCCGTTTGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTACGTTGGCCAA
646 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTACGCTGGCCAA
* *
19895359 AGAGACAGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGTGTTTATTCACATCTTCATATT
1 AGAGAC-GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTATTCACATCTTCATATT
* * * * * *
19895424 TATGCATGCCAATGTCATTTTAATGGCTTGTAAATTCATAAAATAGT-CCTCTAAGCCTTCACGT
65 TCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT-TAAGCCTTCACGT
* * *
19895488 AAAGTTTCATGGCAAGACGAATCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGG
129 GAAGTTTCATGGCAAGACGAATTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGG
* *
19895553 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGTCCCCAAACATGGTAGACGTGATCCTTGTATTT
194 GATTTTTTAAAATTTTTTCGAAAGAATTTTTGTCCCCAAACATGGTAGACGTGATCCTTGTATTT
* *
19895618 TTGTTGGCATGCACAAAAAAATTCATCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGA
259 TTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGA
* * * * * * *
19895683 AAAATGTGTCCTCGTTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGG
324 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGC
19895748 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTA
389 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTA
19895813 CAAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATG
454 CAAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATG
* *
19895878 CCGTCGGTCAGGTTCTCCGGTGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATACGGCACCA
519 CCGTCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTACCCCGACGAAGAAAAATACGGCACCA
** *
19895943 GCACATGCCCGAGCTTAGCATGTGCTACCGTAACCCTCAATCCGGTCCGATCTTAGACTGGGAAT
584 GCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAATCCGGTCCGATCTTAGACTGGGAAT
* *
19896008 GAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCACTACGCTGGCCAG
649 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTACGCTGGCCAA
* * ** * *
19896066 AGAGACGGGATGTGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCCCATCTTCATATA
1 AGAGAC-GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTATTCACATCTTCATATT
*
19896131 TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
65 TCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* *
19896196 AAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGG
130 AAGTTTCATGGCAAGACGAATTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGG
* * * * *
19896261 ATTTTTTAAAATTTTTTTGGAAGAATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTT
195 ATTTTTTAAAATTTTTTCGAAAGAATTTTTGTCCCCAAACATGGTAGACGTGATCCTTGTATTTT
* **
19896326 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAA
260 TATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGAA
*
19896391 AAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCT
325 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCT
* * * *
19896456 CTTTAAGGGGGTGTAAGTTCTCGAGGTTTGTTGAGAGATAGGGGGCCAATATAAGGGCCAAGTAC
390 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTAC
* * * * * *
19896521 CAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCTCAATCGTCGGAACCTCAATGT
455 AAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
*
19896585 CGTCGGTCAGGCTCTCCGGC
520 CGTCGGTCAGGTTCTCCGGC
19896605 AATGGTGCCC
Statistics
Matches: 1123, Mismatches: 116, Indels: 15
0.90 0.09 0.01
Matches are distributed among these distances:
706 55 0.05
707 1062 0.95
708 6 0.01
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (706 bp):
AGAGACGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTATTCACATCTTCATATTT
CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
AGTTTCATGGCAAGACGAATTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGA
TTTTTTAAAATTTTTTCGAAAGAATTTTTGTCCCCAAACATGGTAGACGTGATCCTTGTATTTTT
ATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGAAA
AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTC
TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACA
AGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCC
GTCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTACCCCGACGAAGAAAAATACGGCACCAGC
ACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTACGCTGGCCAA
Found at i:19896696 original size:26 final size:26
Alignment explanation
Indices: 19896660--19896740 Score: 144
Period size: 26 Copynumber: 3.1 Consensus size: 26
19896650 GCCCAACATG
19896660 TGCTTAGACTGGGAATGAACTCCGTA
1 TGCTTAGACTGGGAATGAACTCCGTA
* *
19896686 TGCTTATACTGGGAATCAACTCCGTA
1 TGCTTAGACTGGGAATGAACTCCGTA
19896712 TGCTTAGACTGGGAATGAACTCCGTA
1 TGCTTAGACTGGGAATGAACTCCGTA
19896738 TGC
1 TGC
19896741 CTACGTCAAC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
TGCTTAGACTGGGAATGAACTCCGTA
Found at i:19897601 original size:26 final size:26
Alignment explanation
Indices: 19897565--19897617 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19897555 CTGGTCCGAT
19897565 CTTAGACTAGGAATGAACTCCCTATG
1 CTTAGACTAGGAATGAACTCCCTATG
*
19897591 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCCTATG
19897617 C
1 C
19897618 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCCTATG
Found at i:19898478 original size:26 final size:26
Alignment explanation
Indices: 19898449--19898501 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19898439 CTGGTCCGAT
*
19898449 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACGCCGTATG
*
19898475 CTTAGACTGGGAATGAACGCCGTATG
1 CTTAGACTGGAAATGAACGCCGTATG
19898501 C
1 C
19898502 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACGCCGTATG
Found at i:19899229 original size:888 final size:883
Alignment explanation
Indices: 19895965--19900267 Score: 5783
Period size: 875 Copynumber: 4.9 Consensus size: 883
19895955 GCTTAGCATG
* ** *
19895965 TGCTACCGTAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
19896030 CCGATG-AAA-C-GA---GCGGGCGGGCACTACG-CTGGCCAGAGAGACGGGATGTGCAAGTCGT
66 CCGACGAAAAGCGGACGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGT
* * * *
19896088 GGATCGATAGGGTGGTAGGTGGGTTTAGGCCCATCTTCATATATCTACGTGCCAATGCCATTTTT
130 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* * *
19896153 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTT
195 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTC
* * * *
19896218 GTTTTCTATTTTTCACGA-TTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGA
260 GTTTTCTATTTTTCATGATTTTTGAAAA-TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAA
* * *
19896282 AGAATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
324 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* *
19896347 TCAGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTCCAGAC
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
19896412 ACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
19896477 CGAGGTTTGTTGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
519 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * *
19896542 TGCGCACACCCCCCGGCCCCCTCAATCGTCGGAACCTCAATGTCGTCGGTCAGGCTCTCCGGCAA
584 TGCGCACACCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGCGA
* * * * *
19896607 TGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACAAGCCCGAGCCCAACATGTGCTTAGACTGG
648 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC-T-G-C-CG
* * * *
19896672 GAA---T-GAAC---TCCGTATGCTTATACTGGGAATCAACTCCGTATGCTTAGACTGGGAATGA
709 CAACCCTCGATCTGGTCCG-AT-CTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * * *
19896730 ACTCCGTATGCCTACGTCAACCTATGAAACGAGCGTGCAAGCGCTCAGCCGGCCAGAGGGGCGAG
771 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAAAGGGGCGGG
* *
19896795 ATGCATAAGCCGGGGATCGGCCGAGT-CCCC-C---T-CTA-C-ATGC-
836 ATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCTTGTGCTACCGAT-CT
* ** *
19896835 TGCTG-C--AACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCTA
1 TGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
19896897 CCGACGAAACGAGCAGG-CGGGCGGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCC
66 CCGACGAAA--AGC-GGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
19896961 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCAAGCCAATGCCATTT
128 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * * *
19897026 TTCTGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTGCATGGCAAGACGAC
193 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGAC
* * * * *
19897091 TCATTTTCTATTTTTCATGACTTTTGAAAGTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCAA
258 TCGTTTTCTATTTTTCATGATTTTTGAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA
* *
19897156 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACA
323 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
*
19897221 TTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
388 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
19897286 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTC
453 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
19897351 TGGATGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
518 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * **
19897416 GTGCGCACACCCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTTCGATG
583 GTGCGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGCG
* * * * * ** * * *
19897481 ATGGTGCCCCGGCAAAAAAAAAATGTGGCACC-GACACATGCCTGATTCCAGCATGTACCGCTGC
647 ATGGTGCCCCGAC-GAAGAAAAATGCGGCACCAG-CACATGCCCGAGCCCAGCATGTGCTGCCGC
* * *
19897545 AACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCCTATGCTTAGACTAGGAATGAACT
710 AACCCTCGATCTGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* ** *
19897610 CCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAATCGGCCAAAGGGGTGGGATG
774 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAAAGGGGCGGGATG
*** * * * *
19897675 TGTAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
839 CACAAGCCGGGGATCGGCCGGGTCCCCCTCT-TGTGCTACCGATCT
** * * *
19897721 TGCTGCCACAACCCTCGGTCTGGTGTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * **
19897786 CCAACG-AAA-CGAACGGGCGGGCGGGCACTACATCGGCCAGAGAGACAGGATGCGCAAGCCAAG
66 CCGACGAAAAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
19897849 GATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGTCAATGCCATTTTTA
131 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
19897914 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT-GTCAAGACGACTC
196 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGT-AAGACGACTC
* * * * *
19897978 GTTTTCTATTTTTCATGATTTTTTAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAAAA
260 GTTTTCTATTTTTCATGATTTTTGAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAA
*
19898043 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAAAT
325 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-CAAAAAAAT
*
19898108 TCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
19898173 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
19898238 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAGT-GCACATCAT
519 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-TCGCACATCAT
** * *
19898302 GTGCGCACACCCCCCGGCCCCCCCGATCCCCGAAACCCCAATGCCGCCGGTCAGGTTCTTCGGCG
583 GTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGCG
* * * *
19898367 ATGGTGCCCTGACGAA-AAAAATACGACACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAA
647 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
*
19898431 CCCTCGATCTGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACGCC
712 CCCTCGATCTGGTCCGATCTTAGACTGG-AATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* *
19898496 GTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCCGCTCATCCGGCCAGAGGGGCGGGATGC
776 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGG-CGCTCAGCCGGCCAAAGGGGCGGGATGC
* *
19898560 ACAAGCCGGGGATCGGCCAGGTCCCCCTCTGTGTGCTACCAATCT
840 ACAAGCCGGGGATCGGCCGGGTCCCCCTCT-TGTGCTACCGATCT
* *
19898605 TGCTGCCGGAACCCTCGGTCCGGTCTGATCTTTGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * **
19898670 CTGACGAAATTAGCGGACGGGCGAGCGGGCACTACGTCGGCCAAAGAGGCGGGATGTACAAGCCG
66 CCGACGAAA--AGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
19898735 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
129 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
19898800 TATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGTAAGACGACT
194 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACT
* *
19898865 CGTTTTCTATTTTTCATGATTTTTGAAAATTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGA
259 CGTTTTCTATTTTTCATGATTTTTGAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAA
* ** *
19898930 AGGATTTTTGGCCCTGAACTTGGTAGACGTGATCCTTCTATTTTTTTTGGCATGCACAAAAAAAT
324 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* * *
19898995 TCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTTAGAC
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
19899060 ACTTTCATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
19899125 GGAGGTTTGATAAGGGGTAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
519 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * * *
19899190 TGCGCACACCTCCCCGGCTCGCCCGATTGCCGGAACCCCAATGTCGTCAGTCAGATTCTCCAGCG
584 TGCGCACACC-CCCCGGC-CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT---TCG
* * * * *
19899255 ATGCTCCGATGATGGCACCCCGATGAAGAAAAATGCAGCACCAGTAGATGCCCGAGCCCAGCATG
644 --G---CGATGGT-G--CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* *
19899320 TGCTGCCACAACCCTC-AGTCTGGTCCGATCTTGGACTGCGAATGAACTCCGTATGCTTAGACTG
701 TGCTGCCGCAACCCTCGA-TCTGGTCCGATCTTAGACTG-GAATGAACTCCGTATGCTTAGACTG
* * *
19899384 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGCCAAAG
764 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAAAG
* * * * *
19899449 GGGCGGGATACACAA-CCAGGGGATCAGCCGGGTCCCCCTCTTCATGCTGCTGATCT
829 GGGCGGGATGCACAAGCC-GGGGATCGGCCGGGTCCCCCTCTT-GTGCTACCGATCT
* * * * *
19899505 TGCTGTCGTAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATTAACTCCGAATGCCTAAGCCAA
1 TGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
19899570 CCAACGAAATG-TG-CGGGCGGGCGGGCACTACGCCGGTCAGAGAGACGGGATGCGCAAGCCGTG
66 CCGACGAAAAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
19899633 GATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
131 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * * * *
19899698 TAGCTTGTAAATTCATACAACGGTCCCTTAAGCCGTCACGTGAAGTTTCATGATAAGATGACTCG
196 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCG
* * * * *
19899763 TTTT-TATTTTTCATGATTTTTTAAACA-TTTTGCGGTACGAGATTTTTTAAAATTTTTTTGAAA
261 TTTTCTATTTTTCATGATTTTTGAAA-ATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAA
**
19899826 TTAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATT
325 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
* *
19899890 TAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
390 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
19899955 CTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
455 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
19900020 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
520 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* *
19900085 GCGCACACCCCCCGGCCCCCCGATCATCGGAACCCCAATACCGTCGGTCAGGTTATTCGACGATG
585 GCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG----T------T-
* * * * *
19900150 CTTCGGCGATGTTGCCCCGACGAAGAAAAATACGGCTCCAGCACATGCCCTAGCCCAGCATGCGC
639 CTTCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* ** * *
19900215 TACCGTTACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGC
704 TGCCGCAACCCTCGATCTGGTCCGATCTTAGACT-GGAATGAACTCCGTATGC
19900268 CTAAGTCAAC
Statistics
Matches: 3035, Mismatches: 317, Indels: 140
0.87 0.09 0.04
Matches are distributed among these distances:
867 58 0.02
868 2 0.00
869 1 0.00
870 5 0.00
871 1 0.00
872 3 0.00
873 2 0.00
874 1 0.00
875 505 0.17
876 55 0.02
877 114 0.04
878 6 0.00
879 5 0.00
883 5 0.00
884 253 0.08
885 290 0.10
886 263 0.09
887 206 0.07
888 317 0.10
889 56 0.02
891 2 0.00
892 114 0.04
893 9 0.00
894 218 0.07
895 89 0.03
896 176 0.06
897 2 0.00
898 2 0.00
899 12 0.00
900 257 0.08
901 3 0.00
902 1 0.00
903 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (883 bp):
TGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAAAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCG
TTTTCTATTTTTCATGATTTTTGAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGCGATGG
TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
CGATCTGGTCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
CCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAAAGGGGCGGGATGCACAAGC
CGGGGATCGGCCGGGTCCCCCTCTTGTGCTACCGATCT
Found at i:19900611 original size:26 final size:26
Alignment explanation
Indices: 19900582--19900634 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19900572 TCGGTCCGAT
19900582 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19900608 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19900634 C
1 C
19900635 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.