Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 116 of 117
Found at i:19901501 original size:26 final size:26
Alignment explanation
Indices: 19901472--19901524 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19901462 CTGGTTCAAT
*
19901472 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
19901498 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
19901524 C
1 C
19901525 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:19902379 original size:26 final size:26
Alignment explanation
Indices: 19902343--19902395 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19902333 CTAGTTCGAT
19902343 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19902369 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19902395 C
1 C
19902396 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19904173 original size:26 final size:26
Alignment explanation
Indices: 19904137--19904189 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19904127 CCAGTTCGAT
*
19904137 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19904163 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19904189 C
1 C
19904190 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19905079 original size:25 final size:26
Alignment explanation
Indices: 19905029--19905083 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 26
19905019 CCGGTCTGAT
* *
19905029 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19905055 CTTAGACTGGGAAT-AACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
19905080 CTTA
1 CTTA
19905084 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 14 0.52
26 13 0.48
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19906797 original size:26 final size:26
Alignment explanation
Indices: 19906757--19906827 Score: 124
Period size: 26 Copynumber: 2.7 Consensus size: 26
19906747 CCGATTCGAT
*
19906757 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTTGTAATGAACTCCGTATG
19906783 CTTAGACTTGTAATGAACTCCGTATG
1 CTTAGACTTGTAATGAACTCCGTATG
*
19906809 CTTAGACTGGTAATGAACT
1 CTTAGACTTGTAATGAACT
19906828 TCATATGCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTTGTAATGAACTCCGTATG
Found at i:19907401 original size:891 final size:876
Alignment explanation
Indices: 19905883--19909645 Score: 4114
Period size: 865 Copynumber: 4.3 Consensus size: 876
19905873 CTCGGTCCAA
* * * * *
19905883 TCCG-ATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGTGAATGAACTCCGTGTGCCTAAC
1 TCCGTATCTTAGACTGGTAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
19905947 TCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGTC-AGAG
66 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGGGGCGGGATGCACAAGCCGAG-G
* * * *
19906011 ATCGGTCAGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCGCAACCCTCAGTCC-AGTCCAATC
130 ATCGATCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCGCAACCCTCAGTCCGA-TCCGATC
* * * *
19906075 TTAGATTGGGAATGAAATCCGTATGCCTAAGCCAACCGACAAAACGAGAGGGCGGGCGGGTGGAC
194 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GG-GG-C
* * * * *
19906140 GTGCAATACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
256 GGGCACTACGCCGACCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTT
* * * *
19906205 TAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGTT
321 AAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGT
* * * * *
19906270 CCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGCCGACTCG-TTTCTATTTTTCATGAATTTCGA
386 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * *
19906334 TACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACATGGTA
451 AACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTT-AGAAAGGAGTTTTGGCCCCAAACATGGTA
* * *
19906398 GACCTGATCCTTGTATTTTTGTT-GCGATGCATAAAAAAATTCAGCCAAAAACTCGAAGTGTACA
515 GACATGATCCTTGTATTTTTGTTGGC-ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
19906462 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
579 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
19906527 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAAGGG
644 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGG
* * * *
19906592 CCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATCTGTGCACACCCCCCGACCCCCCGA
709 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGA
* *
19906657 TCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCATTGTTGCCCCAGCGA
774 TCGCCGGAACCCCAATACCGCCGGTCAGGTTCTCC---GA-----C-GCA-TGGTGCCCCAGCGA
*
19906722 AGAAAAATGCGGCACCAGCACATGCCCGATTCGATCTTAGACTTGGAATGAAC
829 AGAAAAATGCGGCACCAGCACATGCCCGA--C-AGCTTAG-CTTGGAATG-AC
* * * * *
19906775 TCCGTATGCTTAGACTTGTAATGAACTCCGTATGCTTAGACTGGTAATGAACTTCATATGCCTAA
1 TCCGTAT-CTTAGACTGGTAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
19906840 GTCTACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACTAAAGGGGCGGGATGCACAAGCCGAGG
65 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGGGGCGGGATGCACAAGCCGAGG
* * * * *
19906905 ATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCTTGCTACCACAACCCTCGGTCCGATCCGATCT
130 ATCGATCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCGCAACCCTCAGTCCGATCCGATCT
* * * ** * *
19906970 AAGACTTGGAAGGAACTCCAAATGCCTAAGCCAACTGACGAAATGAGCGGGCGGGC-GGGCGGGC
195 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGCGGGC
* *
19907034 ACTACGTCGACCAAAGAGACAGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTAAGG
260 ACTACGCCGACCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTAAGG
** * *
19907099 CACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCT
325 CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCT
*
19907164 TAAGCCTTCACGTGAAGTTTCATGGAAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
390 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* *
19907229 TTTTGCAGTTTGAGATTTTTTAAAAGTTTTTT-GAAAGGAGTTTTGGCCCCAAACATGGTAGACG
455 TTTTGCAGTTCGAGATTTTTTAAAA-TTTTTTAGAAAGGAGTTTTGGCCCCAAACATGGTAGACA
* *
19907293 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAACTT-AGCTAAGAACT-GAAAGTGTAAAAGA
519 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCG-AAGTGTACAAGA
* * *
19907356 TTTTGTGACCATTTGAAAAAAGTGTCCCCTTTTCAGACACTTTAATAGCTATTGGCAGCAAACCT
582 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
19907421 GCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCG
647 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCA
* *
19907486 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTGATCA
712 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCG
* * * * * *
19907551 TCGGAACCCCTATACCGTCGGTCAGGTTCTCCGAC-AATGGTGCCTCGGCGAAGAAAAATGCGGC
777 CCGGAACCCCAATACCGCCGGTCAGGTTCTCCGACGCATGGTGCCCCAGCGAAGAAAAATGCGGC
** *
19907615 ACCAGCACATGCCC-A-AGCCCAGCAT-G--TG-C
842 ACCAGCACATGCCCGACAGCTTAGCTTGGAATGAC
* ** ** * *
19907644 TACCG---C-AACCCTCGGT-CCG--GT-T-TAAT-CTTAGACTGGGAATGAACTCTGTATGCCT
1 T-CCGTATCTTAGACT-GGTAATGAACTCTGT-ATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * **
19907699 AAGTCAACTCACGGAACAAGCGTGCGGGCGCTCAG-CTAGCCAGAA-GGGCGTGATGTGCAAGCC
63 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-CCA-AAGGGGCGGGATGCACAAGCC
* * * * * *
19907762 GAGGATCGATCGGGTCCCCGTCTACGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTCCGGTCTG
126 GAGGATCGATCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCGCAACCCTCAGTCCGATCCG
* *
19907827 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCGACCGACGAAACGAGCGGGCGGGCGGGTG
191 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC--G-G
* * * *
19907892 GGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
253 GGCGGGCACTACGCCGACCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGG
*
19907957 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAAT
318 GTTAAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAAT
* *
19908022 GGTCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTT
383 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * ** * *
19908087 TGAAACTTTTT-AAGTTTCGGGATTTTTTAAAATTTTTTTAGAAA-GCCTTTTGTCCCCAAACCT
448 TGAAACTTTTTGCAG-TTCGAGATTTTTTAAAA-TTTTTTAGAAAGGAGTTTTGGCCCCAAACAT
* * * *
19908150 GGTAGACATGATCCTTGTACTTTTGTTGGCATGCACAAAAAATTTTAGCTAAAAACTTGAAGTGT
511 GGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
19908215 ACAAGATTTTGTGACCATTTCAAAAAAGTGTCCTCATTTAAGACACTTTAATGGCTACTGGCAGC
576 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
19908280 AAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGATCTCGAGGTTTGATGAGGGATAGA
641 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGA
* *
19908345 GGGCCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTCCGCACACCCCCCGGCCCCC
706 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* * * * *
19908410 TCGATCGTCAGAACCCCAAAACCGCCGGTCAGGTTCTCCGACG-ATGGTGCCCCATCGAAGAAAC
771 -CGATCGCCGGAACCCCAATACCGCCGGTCAGGTTCTCCGACGCATGGTGCCCCAGCGAAGAAAA
* * * *
19908474 ATGCGGCACCAGTACATGCCTGAGCCCAGCTTGTGCTGTCGCAACCCTCGA-
835 ATGCGGCACCAGCACATGCCCGA---CAGCTT-AGCT-T-GGAA---T-GAC
*
19908525 TCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCC
1 TCC-GT---ATCTTAGACTGGTAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * ** *
19908590 TAAGTCAACCCACGAAACGAGCTTGCGGGCCCTCAGTCGGCCAGAGGTTCGGGATGTCTA-AA-T
62 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGGGGCGGGATG-C-ACAAGC
* * * * * * ** * *
19908653 CGGGGATCGATCGGGTCCCCTTCTGCATGCTGTTGATCCTACTATGGCAACCCTCAATCTGATCC
125 CGAGGATCGATCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCGCAACCCTCAGTCCGATCC
* * * *
19908718 GATCTTAGACTGGGAATGAACTTCGTACGCCTAAGCCAATCGACGAAACGA----GCGGGC-GAG
190 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGG
*
19908778 CGGGCACTACGCC-AGCCAGAGAGAC--GA---G--A----T-G--C-AT-A---GGTCGGT---
255 CGGGCACTACGCCGA-CCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGG
*
19908820 TTAA-GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
319 TTAAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATG
*
19908884 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTT
384 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * ** * * * *
19908948 CAAAATTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGGGTTTTGGCCCTAAACTTGGT
449 GAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTAGAAAGGAGTTTTGGCCCCAAACATGGT
* *
19909013 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGTAGTGTACA
514 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
19909078 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACGCTTTAATGGCTACTGGCAGCAAA
579 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
19909143 CCTGTAAAATCTCAAATGCTCTTGAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT------
644 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGG
19909202 --AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
709 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCC
** * * * *
19909265 GATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTACCTCAGG
772 GATCGCCGGAACCCCAATACCGCCGGTCAGGTTCTCC---GA-----CG-C-ATGGTGCCCCAGC
* * * * * * *
19909330 GAAGAAAATTACGGTACCAGCACATGCACGAGCCCAGCATGT-GCTACCGCAACCCTCG-G
827 GAAGAAAAATGCGGCACCAGCACATGCCCGA---CAGC-T-TAGCT--TGGAA---T-GAC
* * * * *
19909389 TCCGGTCCGATCTTAGACTAAG-AATGAACTCCGTATGCTTAGACTGAGAATGGACTTCGTATGC
1 TCC-GT---ATCTTAGACT-GGTAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGC
** * * * * * * **
19909453 CTAAGTCAACCCATAAAACGAGCGTGCGGGCACTCAACAGGCCAGAGGGACGGGATGCGTAAGCC
61 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGGGGCGGGATGCACAAGCC
* * * * ** * ** * * * ** * *
19909518 GGGGATCGACCTGGTCCCCTTCTGTGTGCTACCCATCTTGCTGCCGCAACCCTCTGTTTGGTCTG
126 GAGGATCGATCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCGCAACCCTCAGTCCGATCCG
* * * *
19909583 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGATGAAACGAGCGGGTGGGCGGG
191 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
19909646 CGAGCCCAGC
Statistics
Matches: 2452, Mismatches: 332, Indels: 197
0.82 0.11 0.07
Matches are distributed among these distances:
852 45 0.02
853 40 0.02
854 5 0.00
856 2 0.00
859 10 0.00
860 222 0.09
861 298 0.12
862 7 0.00
863 4 0.00
864 253 0.10
865 478 0.19
866 80 0.03
867 1 0.00
868 5 0.00
869 5 0.00
870 4 0.00
871 5 0.00
872 3 0.00
873 3 0.00
874 2 0.00
875 4 0.00
877 1 0.00
879 2 0.00
880 41 0.02
881 4 0.00
882 2 0.00
883 1 0.00
884 24 0.01
887 3 0.00
888 12 0.00
890 157 0.06
891 340 0.14
892 181 0.07
893 5 0.00
894 200 0.08
895 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (876 bp):
TCCGTATCTTAGACTGGTAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGGGGCGGGATGCACAAGCCGAGGA
TCGATCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCGCAACCCTCAGTCCGATCCGATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGCGGGCA
CTACGCCGACCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTAAGGC
ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
TTTGCAGTTCGAGATTTTTTAAAATTTTTTAGAAAGGAGTTTTGGCCCCAAACATGGTAGACATG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGG
AACCCCAATACCGCCGGTCAGGTTCTCCGACGCATGGTGCCCCAGCGAAGAAAAATGCGGCACCA
GCACATGCCCGACAGCTTAGCTTGGAATGAC
Found at i:19908572 original size:26 final size:26
Alignment explanation
Indices: 19908536--19908588 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19908526 CCGGTCCAAT
*
19908536 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19908562 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19908588 C
1 C
19908589 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19909429 original size:26 final size:26
Alignment explanation
Indices: 19909400--19909452 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19909390 CCGGTCCGAT
19909400 CTTAGACTAAGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
* * *
19909426 CTTAGACTGAGAATGGACTTCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
19909452 C
1 C
19909453 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:19909724 original size:26 final size:26
Alignment explanation
Indices: 19909688--19909740 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19909678 CTCGTTCGAT
19909688 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19909714 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19909740 C
1 C
19909741 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19909876 original size:288 final size:288
Alignment explanation
Indices: 19909358--19909935 Score: 777
Period size: 288 Copynumber: 2.0 Consensus size: 288
19909348 AGCACATGCA
19909358 CGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTAAGAATGAACTCCGT
1 CGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTAAGAATGAACTCCGT
* * *
19909423 ATGCTTAGACTGAGAATGGACTTCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCACTC
66 ATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTACGGGCACTC
* * * *
19909488 AACAGGCCAGAGGGACGGGATGCGTAAGCCGGGGATCGACCTGGTCCCCTTCTGTGTGCTACCCA
131 AACAGGCCAGAGGGACGGGATGCGCAAGCCGGGGATCGACCTGGCCCCCCTCTGCGTGCTACCCA
* * * * * * *
19909553 TCTTGCTGCCGCAACCCTCTGTTTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGC
196 TCCTGCTACCGCAAACCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
19909618 CAACTGATGAAACGAGCGGGTGGGCGGG
261 CAACCGACGAAACGAGAGGGCGGGCGGG
** * * **
19909646 CGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCTC-GTTCGATCTTAGACTGGGAATGAACTCCG
1 CGAGCCCAGCATGTGCTACCGCAACCCTCGGTC-CGGTCCGATCTTAGACTAAGAATGAACTCCG
* * * *
19909710 TATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGC-CC
65 TATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTACGGGCACT
* * * **
19909774 CTAGCCA-GCCAGAGGGGCGGGATGCGCAAGCTGGGGATCG-GTTGTGCCCCCCTCTGCGTGCTA
130 C-A-ACAGGCCAGAGGGACGGGATGCGCAAGCCGGGGATCGACCTG-GCCCCCCTCTGCGTGCTA
* *
19909837 CCGATCCTGCTACCGTAAACCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
192 CCCATCCTGCTACCGCAAACCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
19909902 AAGCCAACCGACGAAACGAGAGGGCGGGCGGG
257 AAGCCAACCGACGAAACGAGAGGGCGGGCGGG
19909934 CG
1 CG
19909936 GGCACTACGT
Statistics
Matches: 251, Mismatches: 35, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
287 4 0.02
288 244 0.97
289 3 0.01
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (288 bp):
CGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTAAGAATGAACTCCGT
ATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTACGGGCACTC
AACAGGCCAGAGGGACGGGATGCGCAAGCCGGGGATCGACCTGGCCCCCCTCTGCGTGCTACCCA
TCCTGCTACCGCAAACCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCGACGAAACGAGAGGGCGGGCGGG
Found at i:19911248 original size:211 final size:211
Alignment explanation
Indices: 19910879--19911299 Score: 646
Period size: 211 Copynumber: 2.0 Consensus size: 211
19910869 AGCTGGGTAT
* *
19910879 AGGCTCATCTTCATATTTCTGAGTGCCAACACCATTTTTATGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGAGTACCAACACCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
19910944 CCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTTGAA
66 CCTTAAGCCTTCACGTAAACTTTCATGGAAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *
19911009 ACTTTTTACGGATCGAGATTTTTTAAAATTTTTTCGAAAGGTGTTTTGGCCCCAAACTTGGTAGA
131 ACTTTTTACGGATCGAGATCTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTGGGTAGA
*
19911074 CGTGATCCTTGTATTA
196 CGCGATCCTTGTATTA
** *
19911090 AGGCACATCTTCATATTTCT-ACGTACCAATGCCATTTTTATGGCTTGTAAATTCCTACAATGGT
1 AGGCACATCTTCATATTTCTGA-GTACCAACACCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
19911154 CCTTTAAGCCTTCACGTAAAGTTTCATGGAAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
65 CCCTTAAGCCTTCACGTAAACTTTCATGGAAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * *
19911219 AACTTTTTACGGTTCGGGATCTTTTAAAATTTTTTTGGAAGGAGTTTTAGCCCCAAACTGGGTAG
130 AACTTTTTACGGATCGAGATCTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTGGGTAG
19911284 ACGCGATCCTTGTATT
195 ACGCGATCCTTGTATT
19911300 TTTGTTGGCA
Statistics
Matches: 189, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
210 1 0.01
211 188 0.99
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (211 bp):
AGGCACATCTTCATATTTCTGAGTACCAACACCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTAAACTTTCATGGAAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
ACTTTTTACGGATCGAGATCTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTGGGTAGA
CGCGATCCTTGTATTA
Found at i:19912584 original size:26 final size:25
Alignment explanation
Indices: 19912543--19912594 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
19912533 CTAATCCGAT
19912543 CTTAGACTGGAATGAACTCCATATG
1 CTTAGACTGGAATGAACTCCATATG
*
19912568 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCATATG
19912594 C
1 C
19912595 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:19913431 original size:26 final size:26
Alignment explanation
Indices: 19913402--19913480 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
19913392 CTGGTCCGAT
19913402 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
19913428 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
19913454 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
19913480 C
1 C
19913481 CTAATTCAAC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:19914322 original size:26 final size:26
Alignment explanation
Indices: 19914293--19914342 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19914283 CCGGTCTGAT
*
19914293 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACCCCGTATG
19914319 CTTAGATTGGGAATGAACCCCGTA
1 CTTAGATTGGGAATGAACCCCGTA
19914343 CGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACCCCGTATG
Found at i:19915164 original size:897 final size:889
Alignment explanation
Indices: 19913723--19916301 Score: 3330
Period size: 897 Copynumber: 2.9 Consensus size: 889
19913713 ATAGGGGGTG
19913723 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCCTTC-CGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * *
19913786 CATGGCAAGATGATCTCGTTTTCCCTGA-TTTTCAATAATTTGTTTTGAAACTTTTAGCGTTCGA
66 CATGGCAAGACGA-CTCGTTTT--CT-ATTTTTC-ATGA--T-TTTTGAAACTTTTTGGGTTCG-
* * *
19913850 GATTTTTTAAAAATTTTTTCGGAAAGGAGTTTTGG-CCATACATGGTAGATGTGAT-CTTGTATT
122 GATTTTTT-AAAATTTTTTCGG-AAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATT
19913913 CCTTT-TTGGCATGCACAAAAAGATTCAGCTAAAAAAAACTCGAAGTGTACAAGATTTTGTGACG
185 --TTTGTTGGCATGCACAAAAA-ATTCAGCT---AAAAACTCGAAGTGTACAAGATTTTGTGAC-
* *
19913977 CATTTGAAAAAAGTGTCCCGCCATTTAAGACACTTTATGGCTACTGGCCAAGCAAACACTGTAAA
243 CATTTGAAAAAAGTGT--CACCATTTCAGACACTTTATGGCTACTGG-C-AGCAAAC-CTGTAAA
* *
19914042 ATGCTCAAATGCTCTTGTAAGGGGGTGTTGTGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAAT
303 AT-CTCAAATGCTCTT-TAAGGGGGTG-TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
* ** * * *
19914107 TTAAGGGCCAAGTATGAGCACCCATCACACATCATGTGCGCACA-----C--CCCCCCGATCGCT
365 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCACC
* * * * * *
19914165 GGAACCCCAATGTCGTCGGTCAGGTTCACCAGTGATGTTTCGATGATGGTGCCCCGACGAAGAAA
430 GGAACCCCAATGCCGTCAGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGACGAAGAAA
* * *
19914230 AA-AGTGGCACCAGCACATGCCCGAGCCCAGGATGTGCTGCTGCAACCCTCGGTCCGGTCTGATC
495 AATA-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATC
* * * *
19914294 TTAGATTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACCCCGTACGCCTAAGTCAACCCA
559 TTAGACTGGGAATGAACTCCGTATCCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * *
19914359 CGAAACGAGCGTACGGGTGCTCAGCCAGCCAGAGGGGTGGGATGTGCAAGCCGGGGATCGATCGG
624 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGTGCAAGCCGGGGATCGATCGG
* * *
19914424 GTCCCCCTCTGCATGCTGCCGATCCTACTACCGCAACCCTCGGTCTGATCTAATCTTAGACTGGG
689 GTCCCCCTCTGCGTGCTGCCGATCCTACTACCACAACCCTCGGTCTGATCTGATCTTAGACTGGG
**
19914489 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGAGGGCACT-GCGCCG
754 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGAGGGCA-TAAAGCCG
*
19914553 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGCTTAGGCACATCTTC
814 GCCAGAGAGAAGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGCTTAGGCACATCTTC
*
19914618 ATACTTCTGCA
879 ATACTTCTACA
* *
19914629 TTCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* ** *
19914694 CATGGCAGGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTTAGGATTTTT
66 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTG-GG-TTCGGATTTTT
* **
19914759 TAAAATTTTTTCGGAGGGAGTTTTGGCCCCAAACTTTTTAGACGTGATCCTTGTATTTTTGTTGG
129 TAAAATTTTTTCGGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * * *
19914824 CTTGCATAAAAAATTCAGCTAAAAACTAGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
193 CATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
19914889 TCACCATTTCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
258 TCACCATTTCAGACACTTTA-TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
**
19914954 GGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
322 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * *
19915019 CATCGCACATCATTTGCGCACACCCCCCGGCCCCCCGATCATCGGAACTCTAATGCCGCCAGTCA
387 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGTCAGTCA
* * * *
19915084 AGTTCTCTGGTGATGCTCCGATGATGGTGCCCCGAGGAAGAAAAATACGGCACCAACACATGCCC
452 GGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCC
* * * *
19915149 GAGCCCAACATGTGCTGCCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
517 GAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * * *
19915214 TCCTTAGACTAGGATTGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
582 TCCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
19915279 GCCGGCCAGAGGGGCGGGATGCT-CAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCTA
647 GCCGGCCAGAGGGGTGGGATG-TGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGA
* * * *
19915343 TCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGAATGGGAATGAACTCCATATGCCTAAGC
711 TCCTACTACCACAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
*
19915408 CAACCGACGAAACGAGCGGGCGGGCGGGCATAAAGCCGGCCAGAGAGAAGGGATGCGCAAGCCGT
776 CAACCGACGAAACGAGCGGGCGGGAGGGCATAAAGCCGGCCAGAGAGAAGGGATGCGCAAGCCGT
* * * * * *
19915473 GGATCGATAGGGTGGTAGGTGGGTTTTGGTACATCTTCATATTTCTACG
841 GGATCGATAGGGTGGTAGGTGAGCTTAGGCACATCTTCATACTTCTACA
* * *
19915522 TGCCAATGCCATTTTTATGGCTTGTAAATGCATACAATGGTCCTTTAGGCCTTCACGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* *
19915587 TATGGCAAGACGACTCGATTTT-TATTTTTC-TCGATTTTTGAAACTTTTTACGGTTCGGTATTT
66 CATGGCAAGACGACTCG-TTTTCTATTTTTCAT-GATTTTTGAAACTTTTT-GGGTTCGG-ATTT
* * * * *
19915650 TTTAAAATCTTTTCGGAAGGAGTTTTGAACCCAAAATTGGTAGACATGATCCTTCTATTTTTGTT
127 TTTAAAATTTTTTCGGAAGGAGTTTTG-GCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* *
19915715 GGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTG-AAAACG
191 GGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
*
19915779 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
256 TGTCACCATTTCAGACACTTT-ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * *
19915844 AGGGGGCGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGTCCAATATAAGGGCCAAGTACCAGTA
320 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * * *
19915909 CCCATCGTACATAACGTGTGCACACCCCCCTTGGACCCCTCGATCACCGGATCCCCAATGCCGTC
385 CCCATCGCACATCATGTGCGCACACCCCCC--GG-CCCCCCGATCACCGGAACCCCAATGCCGTC
** * * * * *
19915974 AGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGCGACGCCAGCACA
447 AGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACA
* * * * * *
19916039 TGCCCAAGCCCAGCATGTACT-ATCGCAACCCTCGGTCTAGTCTGATCTTAGACTAGGAATGAAT
512 TGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
*
19916103 TCCGTATTCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
576 TCCGTATCCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
** * * * * **
19916168 CGCTCAATCGGCCAGAGGGGTGGGATGCGTAAGCTGAGGG-TC-AGCCATGTCCCCCTCTGCGTG
641 CGCTCAGCCGGCCAGAGGGGTGGGATGTGCAAGCCG-GGGATCGA-TCGGGTCCCCCTCTGCGTG
* * * ** *
19916231 CTACCGATCCTGCTATCACAACCCTCGGTCCAATCTGATCTTAGACGGGGAATGAACTCCGTATG
704 CTGCCGATCCTACTACCACAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATG
19916296 CCTAAG
769 CCTAAG
19916302 TTAACTAACG
Statistics
Matches: 1464, Mismatches: 176, Indels: 77
0.85 0.10 0.04
Matches are distributed among these distances:
890 73 0.05
891 10 0.01
892 171 0.12
893 309 0.21
894 13 0.01
895 316 0.22
896 13 0.01
897 341 0.23
898 30 0.02
900 11 0.01
901 36 0.02
902 39 0.03
903 11 0.01
904 4 0.00
905 7 0.00
906 39 0.03
907 20 0.01
908 21 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGGGTTCGGATTTTTTA
AAATTTTTTCGGAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
GCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCA
CCATTTCAGACACTTTATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
GCACATCATGTGCGCACACCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGTCAGTCAGGTT
CTCCGGTGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
CCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATCCT
TAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
GCCAGAGGGGTGGGATGTGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTA
CTACCACAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCGGGCGGGAGGGCATAAAGCCGGCCAGAGAGAAGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGAGCTTAGGCACATCTTCATACTTCTACA
Found at i:19915232 original size:26 final size:26
Alignment explanation
Indices: 19915190--19915240 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19915180 CTGGTCTGAT
*
19915190 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTAGGAATGAACTCCGTATC
*
19915216 CTTAGACTAGGATTGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
19915241 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATC
Found at i:19916123 original size:26 final size:26
Alignment explanation
Indices: 19916084--19916135 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19916074 TCTAGTCTGA
*
19916084 TCTTAGACTAGGAATGAATTCCGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
* *
19916110 TCTTAGATTGGGAATGAACTCCGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
19916136 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTTAGACTAGGAATGAACTCCGTAT
Found at i:19917116 original size:26 final size:26
Alignment explanation
Indices: 19917087--19917136 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19917077 GTCCGATCTT
*
19917087 AGACTGGGAATGAACTCCGTATGCTG
1 AGACTGGGAATGAACTCCGGATGCTG
19917113 AGACTGGGAATGAACTCCGGATGC
1 AGACTGGGAATGAACTCCGGATGC
19917137 CTAAATCAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.32, T:0.20
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGGATGCTG
Found at i:19918676 original size:26 final size:26
Alignment explanation
Indices: 19918647--19918699 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19918637 CCGGTCTGAC
*
19918647 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19918673 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19918699 C
1 C
19918700 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19919804 original size:10 final size:10
Alignment explanation
Indices: 19919789--19919813 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
19919779 CTCCTTTTCT
19919789 ATTTTCCATG
1 ATTTTCCATG
19919799 ATTTTCCATG
1 ATTTTCCATG
19919809 ATTTT
1 ATTTT
19919814 TTTGGAAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.16, G:0.08, T:0.56
Consensus pattern (10 bp):
ATTTTCCATG
Found at i:19920265 original size:26 final size:26
Alignment explanation
Indices: 19920236--19920288 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19920226 CCGGTCCGAT
19920236 CTTAGACTAGGAACGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
* *
19920262 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
19920288 C
1 C
19920289 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCGTATG
Found at i:19921161 original size:26 final size:26
Alignment explanation
Indices: 19921125--19921177 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19921115 CCGATCCTAT
*
19921125 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19921151 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19921177 C
1 C
19921178 ATAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19922102 original size:26 final size:26
Alignment explanation
Indices: 19922073--19922125 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19922063 CCGATTCGAT
19922073 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
19922099 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
19922125 C
1 C
19922126 CTGAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:19923880 original size:26 final size:26
Alignment explanation
Indices: 19923851--19923901 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19923841 CTGGTCCGAT
19923851 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19923877 CTTAGACTGGTAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
19923902 TCCTATGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19924777 original size:26 final size:26
Alignment explanation
Indices: 19924748--19924800 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19924738 CCGATCCAAT
19924748 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19924774 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19924800 C
1 C
19924801 CTAAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19925145 original size:39 final size:38
Alignment explanation
Indices: 19925028--19925147 Score: 186
Period size: 38 Copynumber: 3.1 Consensus size: 38
19925018 GAGATGGGAT
*
19925028 GCACAAGCCGTGGATCAATAGGGTTTAGGTGGGTTTAG
1 GCACAAGCCGTGGATCGATAGGGTTTAGGTGGGTTTAG
* *
19925066 GTACAAGCCGTTGATCGATAGGGTTTAGGTGGGTTTAG
1 GCACAAGCCGTGGATCGATAGGGTTTAGGTGGGTTTAG
* *
19925104 GCACAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAG
1 GCACAAGCCGTGGATCGATAGGGT-TTAGGTGGGTTTAG
19925143 GCACA
1 GCACA
19925148 TCTTCATATT
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
38 56 0.76
39 18 0.24
ACGTcount: A:0.23, C:0.13, G:0.38, T:0.26
Consensus pattern (38 bp):
GCACAAGCCGTGGATCGATAGGGTTTAGGTGGGTTTAG
Found at i:19925779 original size:26 final size:26
Alignment explanation
Indices: 19925727--19925779 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19925717 CTGGTCCGAT
*
19925727 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
* *
19925753 CTTAGACTGGGAATGAGCTCCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
19925779 C
1 C
19925780 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:19926667 original size:26 final size:26
Alignment explanation
Indices: 19926624--19926676 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19926614 CCAGTCTGAT
*
19926624 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGAGAAAGAACTCCGTATG
* *
19926650 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAAAGAACTCCGTATG
19926676 C
1 C
19926677 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAAAGAACTCCGTATG
Found at i:19927566 original size:25 final size:26
Alignment explanation
Indices: 19927520--19927571 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
19927510 CCGGTCTGAT
*
19927520 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19927546 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19927571 C
1 C
19927572 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19928649 original size:904 final size:900
Alignment explanation
Indices: 19919809--19930457 Score: 9508
Period size: 897 Copynumber: 11.7 Consensus size: 900
19919799 ATTTTCCATG
* * * * *
19919809 ATTTTTTTGGAAGGAGTTTTGGCCCCAACCTTGGTAGGCGTGATCCTTGTATTTTTGTTGGCAGG
1 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
** * *
19919874 CATGAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCG
66 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC-
* * *
19919939 CCC-TTTCAGACACTTTAATTGCTATTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGG
130 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
19920003 GGT-TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
195 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * * * *
19920067 TCACACATCATGTGCGCACACCCCCCGGGCCCCCGATCACCGGAACCCCAATGTCGTCAGTTAGG
260 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG
* * * * * *
19920132 TTCTACGACGATGC-CCTGGCGATGGTGCCCTGGCGAAGAAAAATGCAGCACCAGCACATGCCCG
325 TTCTTCGACGATGCTCC-GACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCCCG
* ** * * * *
19920196 AGCCCAGCATGTGTTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAACGAACTCCGTAT
389 AGCCCAGCATGTGCTACCGCAACCCACGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
19920261 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCATGAAATGAGCGTGCGGGCGCTCTA
454 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTC-A
* ** * * * *
19920326 -TCGGCCAG-AGGGC-GAGATATGCAAG-TAGGGAATCGATCGGGTCCCCCTCTGTGTGCTGCCG
518 GCCGGCCAGAAGGGCAG-GATGCGCAAGCT-GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCA
* * * **
19920387 ATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACT-GGAATGAACTTTGTATGCCTAAG
581 ATCCTACTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * ** *
19920451 CCAACCGACGAAACGAGCAGGCGGACGGTTGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGC
646 CCAACCGACGAAACGAGCGGGCGG-CGG--CGACGGGCACTACACCGGCCAGAGAGACGGGATGC
* * * * *
19920516 GCAAGCCATGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATAGTTT-TGCATGCCGA
708 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTACGTGCCAA
*
19920580 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCC
772 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* *
19920645 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTAAA
837 AAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTAAGGTTCGAGGATTTTTTAAA
* * *
19920708 CTTTTTTCGGAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
1 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
19920773 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
66 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
19920838 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAGGAG
131 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * *
19920903 GCGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGCACCAGCACCCAT
196 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * *
19920968 CGCACATCATGTGCGCACACCCCCCGGCCCTCTGATCGTCGGAACCCCAATGTCGTCGGTCAGGT
261 CGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGT
* * ** * *
19921033 TC-TC--C---G----G-CGTTGGTGCCCAGGCAAAGAAAAATGTGGCACCAGCACATGCCCGAG
326 TCTTCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCCCGAG
* ** *** * *
19921087 CCTAGCATGTGCTGTCGCAACCTTTGGTCCGATCCT-ATCTTAGACTGGGAATGAACTTCGTATG
391 CCCAGCATGTGCTACCGCAACCCACGGTCCGGT-CTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
19921151 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGGGTGCGGGCGCTCAGT
455 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * ***
19921216 CGGCCAGAGGGGCAGGATACGCATGCTGGGGATCGATCGGGTCCCCCTCTGTGTGCTGTTGATCC
520 CGGCCAGAAGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCC
* * ** * * *
19921281 TGCTTCCGTAACCCTCGGTCCGATCC-ATTCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCA
585 TACTGCCACAACCCTCGGTCCGGTCCGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
19921345 ACCGACGAAACAAGC--G-GGTGG-G-CGGGCGCTACACCGACCAAAGAGACGGGATACGGAAGC
649 ACCGACGAAACGAGCGGGCGGCGGCGACGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGC
* * * * *
19921405 CGTAGATCGATAGGGTGGTTGGTGGGTTTATGCACATCTTCATATTTTTGCGTGCCAATGCCATT
714 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* *
19921470 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGACAAGACGA
779 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
19921535 CTCGTTTTCTATTTTTCATGATTTTTGAAAC-TTTT----TTC-------------A
844 CTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTAAGGTTCGAGGATTTTTTAAA
* * **
19921574 A---------AAGGAGTTTTAGCCCAAAACAAGGTAGACATGATCCTTGTATTTTTGTTGGCATG
1 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
* *
19921630 CACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCC
66 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
19921695 CCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGG
131 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
19921760 GTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
196 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * *** *
19921824 CGCACATCATGTGTGCACACCCCCCCGGCCCCCCTAAT-GCCGGAACCCCAATATAAG--GGCCA
261 CGCACATCATGTGCGCACA-CCCCCCGGCCCCCC-GATCGCCGGAACCCCAAT-GCCGCCGGTCA
** * * * ** * ***** * ** *
19921886 ACTAC--CAGCACCCATCGC-AC-ATC-AT-GTGCGCACACCCTCCACCAGCCCCCTCCATCGCC
323 GGTTCTTC-G-A-CGAT-GCTCCGA-CGATGGTGC-C-C-CGGT-GA--AGAAAAATGCGGCACC
* * * * * * * ** * *
19921945 AA-A-A-CCCCAATGCCGTCGGTCAGGTTCT-CCGGCGATGCTC-CGGTGATAGCGCCTCGAT-G
377 AACACATGCCCGA-GCC--CAG-CATGTGCTACC-GC-A-ACCCACGGT--CCG-GTCT-GATCT
* * * * ** *** *
19922004 AAGAAAACTGCGGCACCA-GCACATGCC-CAAGCCCAG-CATGTGCTGTCGCAACCCTCGGTCCG
431 TAG---ACTG-GG-A--ATGAAC-T-CCGTATGCTTAGAC-TG-GGAAT-G-AA--CTCCGT---
* * * * ** * * * * * * *
19922066 ATTCGATCTTAGACTGA-GAATGAACTCCGTATGCTTAGACTGGGAATTAACTCCGTATGCCTGA
478 A-T-G-CCTAAGTC-AACCCACGAA--ACG-A-GCGT-G-C-GGGCACTCA-GCCG---GCC--A
** * ** * ** * ****** * *
19922130 GTCAA-CCCACGAAACG--AGCGTGCGGG--CGCTCAACCGACCAGAGGGGCGGGATGCACAA-C
526 G--AAGGGCAGGATGCGCAAGC-TG-GGGATCGGTC--GGGTCCCCCTCTGCGTGCTGC-CAATC
* * * * * * * *
19922189 CGGGGATCGATCGGGTCCCCA-TCTGCGTGCTACCGATTCTGCTGCCGCAACCCTCAGTCTGGTC
584 C-----T--A-C-TGCCACAACCCT-CG-G-T-CCG-----G-T-CCG--A-TCTTAGACTGG--
* * ** * * * * *** **
19922253 TAATCTTAGACTGGGAATGAACTCCGTATGCCTAA---ACCAACCGATGAAAGAAGCGG-G-CGG
624 GAA--TGA-ACTCCGTATG----CC-TAAGCC-AACCGACGAAACGA-GCGGGCGGCGGCGACGG
** * ** * ** ** * *
19922313 G--C-AGGCGGGCGGGCGCTACGCCA-GTCAG-AGAGACG-GGATGCGCA-AGCCGTGGATCGAT
679 GCACTACACCGGCCAGAGAGACGGGATG-C-GCA-AGCCGTGGAT-CG-ATA---G-GG-T-GGT
* * *
19922371 AGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAGTGCCATTTTTATGCCTTG
733 A-GGT-------GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTG
**
19922436 TAAATTCATACAATGGTCCCTTAAGCCTTCATTTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
790 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
** * * ***
19922501 TTTTTCATTATTTTTGAAACCTTTCGTGGTTCGA-GATTTTTTAAA
855 TTTTTCACGATTTTCGAAACTTTTTAAGGTTCGAGGATTTTTTAAA
* * * * *
19922546 ATTTTTTTTGGAAGGATTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTAATTTTGTTGGCAT
1 A-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
*
19922611 GCACAAAATAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
65 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * * *
19922676 CCCATTTTATACACTTTAATCGCTACTGGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
130 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
19922741 GGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCA
195 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * *
19922806 TTGCACATCATGTGCACACACCTCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCAGCCAGT
260 TCGCACATCATGTGCGCACA-C-CCCC-CGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
* * * * * ** * *
19922871 CAGGTTCTCCGATGATGCTCTGGCAATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGC
321 CAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGC
* * ** *
19922936 CCGAGCCTAGCATTTG-TTGC-CATA---AC---CC--T-TGGTC-----C---G---G---TCC
386 CCGAGCCCAGCATGTGCTACCGCA-ACCCACGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
* ** * * *
19922976 G-AT-CTTCGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACAAGCGTGCAGGCGC
450 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCAC
* * *
19923039 TCAGCCGGCCAGAAGGGCGGGATGCGCAAGCTAGGGATCGATCGGGTCCCCCTCTGCGTGCTGCC
515 TCAGCCGGCCAGAAGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCC
* * * * *
19923104 AATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTGGACTGGAAATGAACTCCGTATGCCTAA
580 AATCCTACTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * ** *
19923169 GCCAA-TGACGAAACGAGCGGACGGGCAGGC-A--AGCACTACGTCGGCTAGAGAGACGGGATGC
645 GCCAACCGACGAAACGAGCGGGC-GGC-GGCGACGGGCACTACACCGGCCAGAGAGACGGGATGC
* *
19923230 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
708 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
*
19923295 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCA
773 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * ** * *
19923360 AGACGACTCATTTTCTATTTTTCACTATTTTTAAAACTTTTTACGGTTCGA-GATTTTTCAAA
838 AGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTAAGGTTCGAGGATTTTTTAAA
* ** * *
19923422 ATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGCATTTTTTTTGGCATG
1 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
* * * *
19923487 CACAAAAAATTTCAGCTAAAAACGCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCT
66 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * *
19923552 CCATTTCAGACACATTAAAGGCTGCTGGCAGCAAACCTGTAAAATGTCAAATGCTCTTTAAGGGG
131 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* **
19923617 GTGTGAGTTCTCGAGGTTTGAAGAGGGATAAAGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
196 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* *
19923682 CGCACATCATGTGCGCACACCCCCCCGACCCCCCGATCGCCTGAACCCCAATGCCGCCGGTCAGG
261 CGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG
* * * * * * * *
19923747 TTC-TCCAGCGATACTTCGACGATGGTGCTCCGATGAGGAAAAATACGGCACCAACACATGCTCG
325 TTCTTCGA-CGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCCCG
* * * * *
19923811 AGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
389 AGCCCAGCATGTGCTACCGCAACCCACGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
19923876 GCTTAGACTGGTAATGAACTCCGTATTCCTATGTCAACCCACGAAACAAGCGTGCGGGCGCTCAA
454 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * *
19923941 CCGACCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTTGGGTCCCCCTCTGCGTGCTGCCGATC
519 CCGGCCAGAAGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATC
* * * * * * *
19924006 CTGCTACCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATCAACTTCGTATACCTAAGCCA
584 CTACTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
19924071 ACCGACGAAACGAGGCGGGC-G-GGCAGGCGGGCACTACGCCAGCTAGAGAGATGGGATGCGCAA
649 ACCGACGAAACGA-GCGGGCGGCGGC-GACGGGCACTACACCGGCCAGAGAGACGGGATGCGCAA
* * *
19924134 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCTCCATGCCAATGCCA
712 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* * * * *
19924199 TTTTTATGGCTTATAATTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGTAAGAG
777 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
19924264 GACTC-TTTT-T-TTTTTCATGATTTTTG-AACTTTTTACGGCTC-AAGATTTTTTAAA
842 GACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTAAGGTTCGAGGATTTTTTAAA
* * * * *
19924318 ATTTCTTCGAAAGGAGTTTTGGCCCCATACTTGGTAGACGTGATCCTTGTATTTTTGCTGGCATG
1 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
*
19924383 CACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
66 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
19924448 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
131 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
19924513 GTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCTAAGTACCAGCACCCAT
196 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * *
19924578 TGCACATCATATGCGCACACCCCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCAGTCA
261 CGCACATCATGTGCGCACA--CCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGCCGGTCA
* * * *
19924643 GGTTCTCCGACGATGCTCTGACGATGGTGCCCCGATGAAGAAAAATGCGGCA-CAGCACATGCCC
323 GGTTCTTCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCCC
** ** * * * **
19924707 GAGCCCAATATGTGCTGTCGTAACCCTA-GATCCGATCCAATCTTAGACTGGGAATGAACTCCGT
388 GAGCCCAGCATGTGCTACCGCAACCC-ACGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
* * * * *
19924771 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCGTGAGGGCGCTT
452 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTC
* * ** * *** * * * * *
19924836 AGCGGGCCAGAGGGGTGGGATGCGCAAG-TCGAGGATCAACCAGGTCCTCCTCTGTGTCCTGCCG
517 AGCCGGCCAGAAGGGCAGGATGCGCAAGCT-GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCA
* ** * * * *
19924900 ATCCTGCTGCGGCAACCCTCAGTCCGGTTCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
581 ATCCTACTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * * * *
19924965 CCAACCGATGAAACGAGCGAGCAGACGAGCAGGCGAGCAATACACCGACCAGGGAGATGGGATGC
646 CCAACCGACGAAACGAGCGGGC-GGCG-GC-GACGGGCACTACACCGGCCAGAGAGACGGGATGC
* * * * * *
19925030 ACAAGCCGTGGATCAATAGGGT-TTAGGTGGGTTTAGGTACAAGCCGTTGATCGATAGGGTT-TA
708 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC-A-TC--T--TC-ATA--TTTCTA
* *** * ***** * * * ** *** *** * * * * *
19925093 GGTGGGTTTAGGCACA-AGCCGTGGATCG-ATA-GGATGGTA-GGTGGGTTTAGGC-ACATCTTC
764 CGT--GCCAATGC-CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA-CGTG
* * * * * ** * *
19925153 ATATTTCTACATGCCAATG-CCA-T--TTTTATGACTTGTAAATTCATACAATGGTCCCTTAAGC
825 A-AGTT-T-CATGGCAA-GACGACTCGTTTTCT-A-TT-T---TTC--ACGAT--TTTC-GAA-A
* * * * **
19925214 CTTCACATGAAGTTTCATGGCAGGACGACTCGTTTT-CT
874 CTT---TTTAAGGTTC---G-A-G--GA-T-TTTTTAAA
* * * * * * ***
19925252 A-TTTTTC---ATGA-TTTTTG----AAACTT-TTTG-C--GGT--TTGGGA-TTTT-TTAAAAT
1 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTT-GTATTTTTGTTGGCA-
**** ** * ** * ** * * * **
19925300 TTTTTTAGAAGGAGTTTTGGTCCCAAACTTG--GTAG-ACATGATCCTTGT-ATTCTTTTTGGCA
64 -TGCACA-AAAAAATTCAGCT-AAAAACTCGAAGT-GTACAAGAT-TTTGTGA--CCATTT-G-A
** ** ** * * ** ** * *
19925361 TGCACAAAA--AACTTCAGCT-AAAAACTCGAA-GTG-TACAAG-ATTTTG-TAACCATTTGAAA
120 ---A-AAAAGTGTCCCCATTTCAGACACTTTAATG-GCTACTGGCA----GCAAACC---TG-TA
* ** * * ** * *
19925419 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACCGGTAGCAAACCTGTAAAATCTCAAATGCTC
172 AAA---T-CTCAAAT--G-CTCTTTAA-GG-----GG--G------TGTGAGTTCTC-GA-GGT-
* * * * ** ** *
19925484 TTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAGTATATGGGCCAAGTACC
213 TTGATGAGGG-AT-AG-----G-GG---G-CCA-ATATA-AGGG-C-----------CAAGTACC
* * * * *
19925549 AGCACCCATTGCACATCATGTGCGCACACCCCCTGACCCCCCCGATCGCGGGAACCCCAATGTCG
252 AGCACCCATCGCACATCATGTGCGCACACCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCG
* * * ** **
19925614 CCGGTCAGGTTCTTTGGCGATGCTCCGACGATGGTGCCTCGACGAAGAAAAATTTGGCACCAACA
316 CCGGTCAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACA
* * * *
19925679 CATGTCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAA
381 CATGCCCGAGCCCAGCATGTGCTACCGCAACCCACGGTCCGGTCTGATCTTAGACTGGGAATGAA
* * * **
19925744 CTCCATATGCTTAGACTGGGAATGAGCTCCGCATGCCTAAGTCAACGTACGAAACGAGCGTGTC-
446 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CG
* * * * * * ** *
19925808 GGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGTTTGGTTGGGTCCCCCTCTATGTA
510 GGCACTCAGCCGGCCAGAAGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTG
* * * * * * * *
19925873 TTGCCAATCCTGCTACCACAAACCTCGATCCGATCTGATCTTAGACTGGGAGTGAACTCCGTATG
575 CTGCCAATCCTACTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** *
19925938 CCTAAGCCAACCGATGAAACGAGCGGGCGGGCGG-G-CGGGCACTACACCGGTTAGAGAGACGAG
640 CCTAAGCCAACCGACGAAACGAGCGGGC-GGCGGCGACGGGCACTACACCGGCCAGAGAGACGGG
* ** * * *
19926001 ATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGCATTTAGGCACATCTTCATATTTTTGCATGC
704 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
* * *
19926066 CAATACCATTTTTATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCAT
769 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* *
19926131 GGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAA--TTTT-AGTAGTTC-AGGATTTTT
834 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTAAG--GTTCGAGGATTTTT
19926192 TAAA
897 TAAA
* * * *
19926196 ATTTTTTCGAAAGCAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTATATTTTTGTTGGCTTG
1 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
* * *
19926261 CACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAATGTCC
66 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
19926326 CCATTTCAGACACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
131 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
19926391 GTGGGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
196 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * *
19926455 TGCACATCATGTGGGCACACCCCCCTGGCCCCCCGATCGTCGAAACCCCAATGCTGTCGGTCAGG
261 CGCACATCATGTGCGCACACCCCCC-GGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG
* *
19926520 TTCTTCGACGATGCTCTGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGA
325 TTCTTCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCCCGA
* ** * *
19926585 GCCCAGCATATGCTAATGCAACCCTA-GGTCCAGTCTGATCTTAGACTGGGAAAGAACTCCGTAT
390 GCCCAGCATGTGCTACCGCAACCC-ACGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
19926649 GCTTAGACTGAGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGATCGTGCGAGCACTCAG
454 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * *
19926714 TCGGCCAGAGGGGCGGGATGCGCAAG-TCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCAAT
519 CCGGCCAGAAGGGCAGGATGCGCAAGCT-GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAAT
* * * * * * * * *
19926778 CCTACTGTCGCAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTTCGCAAGCGTAAGCC
583 CCTACTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
19926843 AACCGACGAAACGA-CTGGGC-G-GGCGAGCGGGCACTACACTGGCCAGAGAGACGGGAAGCGCA
648 AACCGACGAAACGAGC-GGGCGGCGGCGA-CGGGCACTACACCGGCCAGAGAGACGGGATGCGCA
* *
19926905 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
711 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
19926970 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
776 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
19927035 CGACTCGTTTTCTATTTTTCACTACTTTT-GAAACTTTTTACGGTTCGA-GATTTTTTAAA
841 CGACTCGTTTTCTATTTTTCACGA-TTTTCGAAACTTTTTAAGGTTCGAGGATTTTTTAAA
* *
19927094 ATTCTTTCGGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
1 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
* * * *
19927158 CACAAAAAAATTCAGGTAAAAACTCAAAGTGTACAAGATTTTGAGACCATTTGAAAAAAATGTCC
66 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
19927223 CCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
131 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
19927288 GTAG-GAGTTCTCAAGGTTTGATGAGGGATA-GAGGCCAATATAAGGGCCAAGTACCAGCACCCA
196 GT-GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * * *
19927351 TCACACATCATGTGCGCACACCCCCCGGGCCCCCGATCGCCAGAACCTCAATGCTGCTGGTCAGG
260 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG
*
19927416 TTCTTCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCAGCAACACATGCCCGA
325 TTCTTCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCCCGA
* * * *
19927481 GCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAATTCCGTATG
390 GCCCAGCATGTGCTACCGCAACCCACGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
19927546 CTTAGACTGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGTGCACTTAGC
455 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * * *
19927610 CGGCCAGAAGGGCGGGATGCGCAAG-TCGGGGATTGGTTGGGTCCCTCTCTGCATGCTGTCGATC
520 CGGCCAGAAGGGCAGGATGCGCAAGCT-GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATC
* * * *
19927674 CTACTGCCACAACCCTCGATCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAACCCA
584 CTACTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * ** * * *
19927739 ACCGACGAAATGAGTGGGCAGGCAGGCGAAAGGGCCCTACGTCGACCAAAGAGTCGGGATGCGCA
649 ACCGACGAAACGAGCGGGC-GGC-GGCG-ACGGGCACTACACCGGCCAGAGAGACGGGATGCGCA
* **
19927804 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTTTCAATGCC
711 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
*
19927869 ATTTTT-TCAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
776 ATTTTTAT-GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
19927933 ATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAAGGTTCGA-AATTTTTTAAA
840 ACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTAAGGTTCGAGGATTTTTTAAA
* *
19927993 ATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTT-TTGGCAT
1 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT-ATTTTTGTTGGCAT
* * * *
19928057 GCATAAGAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCTTTTGAAAAAAGTGTC
65 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
19928122 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAGCAGTAAAATCTCATATGCTCTTTAAGGG
130 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * ** *
19928187 GGTGTGAGTTCTTGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCTGAGTACTAGCACCCA
195 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* *
19928252 TCGCACATCATGTGCGCACACCGCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTC
260 TCGCACATCATGTGCGCACACC-CCC-CGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
* * * * *
19928317 AGGTTCTTCAACGATGCTCCGACGGTGGTGCCCTGGTAAAGTAAAATGCGGCACCAACACATGCC
322 AGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCC
*** * * **
19928382 CGAGCCCAGCATGTGCTGTTGCAACCCACGGTCCTGTCTGATCTTAGACTGGCAATGAACTCTAT
387 CGAGCCCAGCATGTGCTACCGCAACCCACGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
* * * * * *
19928447 CTACTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAGCGTGGGGGCGCTC
452 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTC
* ** * * *
19928512 AG-CGACCAGAAGGGCAGG-TCGCGCAAGCTGGGGATCGACCGAGTCCCCCTCTGCGTGCTACCG
517 AGCCGGCCAGAAGGGCAGGAT-GCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCA
* * *
19928575 ATCCTACTACCACAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
581 ATCCTACTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
19928640 CCAACCGACGAAACGAGCGAGCGGGCGGGCGAGCGGACACTACGCCTGCCAGAGAGATGGGATAC
646 CCAACCGACGAAACGAGCGGGC-GGC-GGCGA-CGGGCACTACACCGGCCAGAGAGACGGGATGC
* * * * *
19928705 GCAAGTCGTTGATCCATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAAT
708 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
* *
19928770 GCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
773 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * *
19928835 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACCTTTTGAGGTT-TAGGATTTTTTAAA
838 AGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTAAGGTTCGAGGATTTTTTAAA
* *
19928897 ATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTGTTGGCATG
1 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
* *
19928962 CA-TAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
66 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
19929026 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAGTCTCAAATGCTCTTTAAGGGG
131 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
19929091 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC-ATCATAAGGGCCAAGTACCAGCACCCA
196 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT-ATAAGGGCCAAGTACCAGCACCCA
* * * *
19929155 TCGCACATCATGCGCGCACACCCCCCGG-CCCCCTATCACCGAAACCCCAATGCCGCCGGTCAGG
260 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG
* ** * * * ** * *
19929219 TTCTCCGGTGATGCTCCGACTATCGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCTCGA
325 TTCTTCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCCCGA
* * * ** * ** *
19929284 GCCTAGCATGTGCTATCACAACCCTTGGTCCGATCCAATCTTAGACT-GGAATGAACTCTGTATG
390 GCCCAGCATGTGCTACCGCAACCCACGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
19929348 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTTAGC
455 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * ** *
19929413 CGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGGTTGGGTCACCCTCTGCGTGCTATCGATCC
520 CGGCCAGAAGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCC
* * * * *
19929478 TGCTGCCACAACCCTCGGTCTGCTCTGATCTTAGACTGAGGAATGAAATCCGTATGCCTAAGCCA
585 TACTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCA
*
19929543 ACCGACGAAACGAGC--G-GGCGG-G-CGGGCACTACACCGGCCAGAGAGACAGGATGCGCAAGC
649 ACCGACGAAACGAGCGGGCGGCGGCGACGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGC
* *
19929603 CATGGATCGATCAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
714 CGTGGATCGAT-AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
*
19929668 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAGGGCAAGACG
778 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
19929733 ACTCGTTTTCTATTTTTTACGACTTTCGAAACTTTTTATGGTTC-AGGATTTTTTGAA
843 ACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTAAGGTTCGAGGATTTTTTAAA
* * * *
19929790 ATTTTTTTGGAAAGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
1 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
* *
19929855 CACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCC
66 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
19929920 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
131 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
19929985 GTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
196 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
19930050 CGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG
261 CGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG
* * ** * * * *
19930115 TTCTCCGACGATGTTCCGACGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCTGA
325 TTCTTCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCCCGA
* * * *
19930180 GCCCAGCATGTGCTGCCGCAACCCATGGTTCGGGTC-AATCTTAGACTGGGAATGAACTCCGTAT
390 GCCCAGCATGTGCTACCGCAACCCACGG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
19930244 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCTACGAAACGAGCATGCAGGCGCTCAG
454 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
19930309 CCGGCCA-AAGGGGCAGGAAGCGCAAGCGGGGGATCAGTCGGGTCCCCCTCTGCATGATGCCAAT
519 CCGGCCAGAA-GGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAAT
* * * * * * *
19930373 CTTGCTGCCATAACCCTTGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCCAAGCC
583 CCTACTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
19930438 AACCAACGAAATGAGCGGGC
648 AACCGACGAAACGAGCGGGC
19930458 AGACGGACGT
Statistics
Matches: 7956, Mismatches: 1318, Indels: 952
0.78 0.13 0.09
Matches are distributed among these distances:
855 1 0.00
856 56 0.01
857 228 0.03
858 3 0.00
860 1 0.00
864 1 0.00
866 5 0.00
867 2 0.00
868 2 0.00
869 4 0.00
870 5 0.00
871 3 0.00
872 99 0.01
873 13 0.00
874 10 0.00
875 255 0.03
876 154 0.02
877 2 0.00
878 5 0.00
879 1 0.00
880 4 0.00
881 3 0.00
882 11 0.00
883 184 0.02
884 13 0.00
885 4 0.00
886 5 0.00
887 12 0.00
888 15 0.00
889 170 0.02
890 90 0.01
891 58 0.01
892 48 0.01
893 228 0.03
894 214 0.03
895 190 0.02
896 620 0.08
897 1219 0.15
898 363 0.05
899 644 0.08
900 556 0.07
901 63 0.01
902 14 0.00
903 210 0.03
904 535 0.07
905 53 0.01
906 17 0.00
907 21 0.00
908 12 0.00
909 38 0.00
910 13 0.00
911 6 0.00
912 2 0.00
914 2 0.00
915 5 0.00
916 1 0.00
917 6 0.00
918 11 0.00
919 28 0.00
920 17 0.00
921 25 0.00
922 18 0.00
923 4 0.00
924 15 0.00
925 23 0.00
926 13 0.00
927 11 0.00
928 7 0.00
929 10 0.00
930 9 0.00
931 9 0.00
932 1 0.00
933 20 0.00
934 7 0.00
935 9 0.00
936 9 0.00
937 7 0.00
938 2 0.00
939 11 0.00
940 19 0.00
941 23 0.00
942 6 0.00
943 16 0.00
944 11 0.00
945 16 0.00
946 2 0.00
947 3 0.00
948 10 0.00
949 7 0.00
950 5 0.00
951 12 0.00
952 10 0.00
953 18 0.00
954 15 0.00
955 133 0.02
956 14 0.00
957 13 0.00
958 14 0.00
959 8 0.00
960 5 0.00
961 5 0.00
962 2 0.00
963 3 0.00
965 4 0.00
966 20 0.00
967 12 0.00
968 11 0.00
969 20 0.00
970 4 0.00
972 3 0.00
974 1 0.00
975 46 0.01
976 16 0.00
978 77 0.01
979 248 0.03
980 35 0.00
981 4 0.00
982 207 0.03
983 52 0.01
984 9 0.00
985 14 0.00
986 23 0.00
987 9 0.00
988 5 0.00
989 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (900 bp):
ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
CGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGT
TCTTCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCCCGAG
CCCAGCATGTGCTACCGCAACCCACGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
GGCCAGAAGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCT
ACTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGCGGCGACGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTCGAAACTTTTTAAGGTTCGAGGATTTTTTAAA
Found at i:19929357 original size:25 final size:26
Alignment explanation
Indices: 19929323--19929374 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19929313 CCGATCCAAT
*
19929323 CTTAGACT-GGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19929348 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19929374 C
1 C
19929375 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19930255 original size:26 final size:26
Alignment explanation
Indices: 19930219--19930271 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19930209 TCGGGTCAAT
19930219 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19930245 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19930271 C
1 C
19930272 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19930964 original size:26 final size:26
Alignment explanation
Indices: 19930913--19930965 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19930903 CTGGTCTGAT
*
19930913 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
19930939 CTTAGACTGGGAATGAAC-TCTATATG
1 CTTAGACTGGGAATGAACTTC-ATATG
19930965 C
1 C
19930966 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:19932066 original size:158 final size:158
Alignment explanation
Indices: 19931778--19932464 Score: 887
Period size: 158 Copynumber: 4.3 Consensus size: 158
19931768 CATGTGCTGT
* * * *
19931778 CGCAACCCTCGGTTCGGTCCGATCTTACACTGGGAATGAACTCCATATGCCTAAGTCAAGCCACA
1 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACA
* *
19931843 AAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGTCGGGATGCGTAAGTCGAGGATCAGTCAGGT
66 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGTCGGGATGCGTAAGTCGAGGATCAGTCAGGT
* ** *
19931908 CCCCTCTGAGCATTGCCAATCTTGTTGC
131 CCCCTCTGCGCGCTGCCAATCCTGTTGC
** * * *
19931936 CGCAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATTAACTCCGTATGGCTTAGTCAACCCACA
1 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACA
*
19932001 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGTCGGGATGCGTAAGCCGAGGATCAGTCAGGT
66 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGTCGGGATGCGTAAGTCGAGGATCAGTCAGGT
19932066 CCCCTCTGCGCGCTGCCAATCCTGTTGC
131 CCCCTCTGCGCGCTGCCAATCCTGTTGC
* *
19932094 CACAACCCTCGGTCCGGTCCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC-CT
1 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-
* * *
19932158 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGTCGGGATGCGTAAGTTGAGGATCAGTCGGG
65 AAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGTCGGGATGCGTAAGTCGAGGATCAGTCAGG
19932223 TCCCCTCTGCGCGCTGCCAATCCTGTTGC
130 TCCCCTCTGCGCGCTGCCAATCCTGTTGC
* * * * * *
19932252 CGTAACCCTTGGTCTGGTCCGATCTTAGACAGGGAATTAACTCCGTATGGCTAAGTCAACCCACA
1 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACA
* * * * * *
19932317 AAACGAGCGTGCGGGCGTTCAGCCGGCCAGAGGGGT-GGAATGTGTAAG-CCAGAGATC-GACCG
66 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGA-GGGTCGGGATGCGTAAGTCGAG-GATCAG-TCA
* *** * * *
19932379 GGTCCTCCTCTGCGTGCCATCGATCTTGTTAC
128 GGTCC-CCTCTGCGCGCTGCCAATCCTGTTGC
* * * * * *
19932411 CGTAACCCTCGGTCCAGTCCCATCTTAGACTAGGAATGAACTCTGTATACCTAA
1 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
19932465 CCCAATTGAC
Statistics
Matches: 466, Mismatches: 57, Indels: 11
0.87 0.11 0.02
Matches are distributed among these distances:
157 4 0.01
158 394 0.85
159 68 0.15
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACA
AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGTCGGGATGCGTAAGTCGAGGATCAGTCAGGT
CCCCTCTGCGCGCTGCCAATCCTGTTGC
Found at i:19933817 original size:26 final size:26
Alignment explanation
Indices: 19933788--19933840 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19933778 CCGGTTCGAT
*
19933788 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19933814 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19933840 C
1 C
19933841 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19934161 original size:661 final size:638
Alignment explanation
Indices: 19932853--19934163 Score: 1558
Period size: 649 Copynumber: 2.0 Consensus size: 638
19932843 AGTGTCCCCA
* * *
19932853 TTTCAGACACTTTACTGGCCACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
1 TTTCAGACACTTCAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
19932918 TGACTTCCCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGC
66 TGACTTCCCGAGGTTTGATGAGGAATA--GGG--------AGGGCCAAGTACCAGCACCCATTGC
* * * * *
19932983 ACATCATGTGCGTAGACCCCCCCTCGGCCCCTCGATCGCCGGAACCCCAATGCCGTCGGTCAAGT
121 ACATCATGTGCGCAAACCCACCCTCGGCCCCCCGATCGCCGGAACCACAATGCCGTCGGTCAAGT
* * * * *
19933048 TCTCCGACGATGGTGCCCAATGAAGAAAAATGCTGCACAAGCACATGCCCGGGCCTAGCATGTGC
186 TCTCCGACGATGGTCCCCAATGAAGAAAAATGCGGCACAAGAACATGCCCGAGCCCAGCATGTGC
* * *
19933113 TGCCGCAACCCTTGGCCCGGTCCGATCTTAGACTGGGAGTGAACTCCATATGCTTAGACTGGGAA
251 TGCCGCAACCCTCGGCCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAA
* * * * *
19933178 CGAACTCTGTATGCCTAAGTTAACCTACGAAACGAGCGTGCGGGTGCTCAACCAGCCAGAGGGCC
316 CGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCAGCCAGAGGGCC
* * * * * * *
19933243 GGGGATCGGTCGGGTCTCACACTGCATATTGCCGATCGTGCTGTTGCAACCCTCGGTCTGGTCCG
381 GGGGATCAGTCGGGTCTCACACTGCACACTGCCAATCCTGCTGTCGCAACCCTCGGTCTGGTCCA
* ** * *
19933308 ATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGCGGGCA
446 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGACGGGCGGGCA
* * *
19933373 CTACACATGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGATGGTAGGCGGGCTTAGGC
511 CTACACATGACAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGATGGTAGGCGGGCTTAGGC
* *
19933438 ACATCTTCATATTTCTGCACGCCAATGCAATTTTTATGGCTTGTAAATTCATGCAGTGGTCCC
576 ACATCTTCATATTTCTGCACGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * *
19933501 TTTCAGACACTTCAATGGCTACTGGCAGTATACCTGTAAAATGTCAAATGCTCTTTAAGGTGGTG
1 TTTCAGACACTTCAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
19933566 TGAGTTCTCGAGGTTTGATGAGGAATA-GG-GGGCCAAGTACCAGCACCCATTGCACATCATGTG
66 TGACTTCCCGAGGTTTGATGAGGAATAGGGAGGGCCAAGTACCAGCACCCATTGCACATCATGTG
* * * *
19933629 CGCACAACCCATCCT-GGCCCCCCTGATTGTCGGAACCACAATGCCGTCGTTCAAGTTCTTCGAC
131 CGCA-AACCCACCCTCGGCCCCCC-GATCGCCGGAACCACAATGCCGTCGGTCAAGTTC-TC--C
* * *
19933693 GATGCTCCGATGATGGTCCCTCGATGAAGAAAAATGCGGCACCAGAACATGCCCTAGCCCAGCAT
191 GA-----C---GATGGTCCC-CAATGAAGAAAAATGCGGCACAAGAACATGCCCGAGCCCAGCAT
* * * * *
19933758 GTGCTGTCGTAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
247 GTGCTGCCGCAACCCTCGGCCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTA
* * *
19933823 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
312 GGAACGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCAGCCAGA-
* * * * *
19933888 GGCCGGAATGCGTACGCCGAGGATCAGTCGGGTC-CCCTCTGCGCGCTGCCAATCCTGTTGTCGC
376 ----GG---GC---CG--G-GGATCAGTCGGGTCTCACACTGCACACTGCCAATCCTGCTGTCGC
19933952 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
428 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
* *
19934017 CG-GCGGACGGGCGGGCACTACGTCA-GACAGAGAGATGGGATGCGCAAGCCGTAGATCGATAGG
493 CGAGCGGACGGGCGGGCACTAC-ACATGACAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGG
* * *
19934080 GTGGTAGG-TGGCTTTAGGCACATCTTCATATTTCTGCATC-CCAATGCCATTTTTATGGCTTGT
557 ATGGTAGGCGGGC-TTAGGCACATCTTCATATTTCTGCA-CGCCAATGCAATTTTTATGGCTTGT
19934143 AAATTCATACAATGGTCCC
620 AAATTCATACAATGGTCCC
19934162 TT
1 TT
19934164 AAGCCTTCAC
Statistics
Matches: 561, Mismatches: 71, Indels: 49
0.82 0.10 0.07
Matches are distributed among these distances:
636 44 0.08
637 37 0.07
638 2 0.00
640 3 0.01
645 3 0.01
648 89 0.16
649 150 0.27
654 2 0.00
657 2 0.00
660 5 0.01
661 124 0.22
662 87 0.16
663 13 0.02
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.23
Consensus pattern (638 bp):
TTTCAGACACTTCAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
TGACTTCCCGAGGTTTGATGAGGAATAGGGAGGGCCAAGTACCAGCACCCATTGCACATCATGTG
CGCAAACCCACCCTCGGCCCCCCGATCGCCGGAACCACAATGCCGTCGGTCAAGTTCTCCGACGA
TGGTCCCCAATGAAGAAAAATGCGGCACAAGAACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
CTCGGCCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAACGAACTCCGT
ATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCAGCCAGAGGGCCGGGGATCAGT
CGGGTCTCACACTGCACACTGCCAATCCTGCTGTCGCAACCCTCGGTCTGGTCCAATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGACGGGCGGGCACTACACATGA
CAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGATGGTAGGCGGGCTTAGGCACATCTTCAT
ATTTCTGCACGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCC
Found at i:19935365 original size:26 final size:26
Alignment explanation
Indices: 19935336--19935388 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19935326 CCGGTTCGAT
*
19935336 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19935362 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19935388 C
1 C
19935389 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19936247 original size:26 final size:26
Alignment explanation
Indices: 19936218--19936270 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19936208 CTAGTCCGAT
*
19936218 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19936244 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19936270 C
1 C
19936271 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19936982 original size:883 final size:883
Alignment explanation
Indices: 19935044--19938442 Score: 4254
Period size: 883 Copynumber: 3.9 Consensus size: 883
19935034 TCATGCAGTG
* * * *
19935044 GTCCC-TTTCAGACACTTCAATGGCTACTGGCAGTATACCTGTAAAATGTCAAATGCTCTTTAAG
1 GTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
19935108 GTGGTGTGAGTTCTCGAGGTTTGATGAGGAATA---GG---------GGGCCAAGTACCAGCACC
66 G-GGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * *
19935161 CATTGCACATCATGTGCGCACAACCCATCCTGGCCCCCCTGATTGTCGGAACCACAATGCCGTC-
130 CATCGCACATCATGTGCGCAC-ACCC--CCTGGCCCCCC-GATCGTCGGAACCCCAATGCCGTCT
* * * * *
19935225 GTTCAAGTTCT-TCGACGATGCTCCGATGATGGTCCCTCGATGAAGAAAAATGCGGCACCAGAAC
191 G-TCAGGGTCTCTC--CG--G---CGATGGT-G-CCC-CGACGAAGAAAAATGCGGCACCAGCAC
* * *
19935289 ATGCCCTAGCCCAGCATGTGCTG-TCGTAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAA
245 ATGCCCGAGCCCAGCATGTGCTGCCCGTAACCCTCGG-CCAGTTCGATCTTAGACTGGGAATGAA
*
19935353 CTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGG
309 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGG
* * * * *
19935418 GCGCTCAGCCGGCCAGAGGGCCGGAATGCGTACGCCGAGGATC-AGTCGGGT-CCCCTCTGCGCG
374 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGA-TCGGGTCCCCCTCTGCGTG
* * * **
19935481 CTGCCAATCCTGTTGTCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
438 CTACCGATCCTGCTGTCGCAACCCTC-GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
19935546 CCTAAGCCAACCGACAAAACG-GCGGACGGGCGGGCACTACGTCAGA-CAGAGAGATGGGATGCG
502 CCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCACTACGACCGACCAGAGAGACGGGATGCG
* * *
19935609 CAAGCCGTAGATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCATATTTCTGCATCCCAATG
567 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* *
19935674 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTTAGGGCAA
632 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAA
* * * * * * *
19935739 GATGACCCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTTGGGGTTTTTTAAAATTT
697 GACGACTCATTTTCTATTTTTCATGAATTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTT
* * *
19935804 TTTCAGAAGGATTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
762 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
19935869 AAAAAATTCAGCTAATAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGT
827 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
19935926 GTTCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCCCTTTAA
1 G-TCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * * * *
19935991 GGGGCTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCGAACTACCAGCAG
65 GGGG-TGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* *
19936056 CCATCGCATATCATGTGCGCACACCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCG-CTATC
129 CCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCGATCGTCGGAACCCCAATGCCGTCTGTC
* * *
19936119 AGGGTCTCTCCGGCGATGGTGCCCCGACGAAGGAAAAATG-TGCAACCAGCACATGCCCAAG-CT
194 AGGGTCTCTCCGGCGATGGTGCCCCGACGAA-GAAAAATGCGGC-ACCAGCACATGCCCGAGCCC
* * *
19936182 AGCATGTGCTGCCCGTAACCCTCAGCCTAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTT
257 AGCATGTGCTGCCCGTAACCCTCGGCC-AGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * *
19936247 AGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CCACAAAACAAGCGTGTGGGCGTTC-GACCA
321 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAG-CCG
* * *
19936310 GCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCTTG
385 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTG
* * * * *
19936375 CTGCCACAGGCCTTCGTCTGGTCTGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACC
450 CTGTCGCA-ACCCTCGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
19936440 GACGAAATGAGCGGGCAAGCGTGCACTAC-ACCGACCAGAGAGACGGGATGCGCAAGCTGTGGAT
514 GACGAAACGAGCGGGCAGGCGGGCACTACGACCGACCAGAGAGACGGGATGCGCAAGCCGTGGAT
*
19936504 CGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGCATGCCAATGCCATTTTTATGG
579 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
*
19936569 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCATTT
644 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCATTT
* *
19936634 TCTATTTTTCAT-AATTTTGAAAACTTTTTACGGTTCGAGAATTTTTAAAATTTTTTCGGAAGGA
709 TCTATTTTTCATGAATTTTG-AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
*
19936698 GTTTTGGCCCCAAACTT-TTAAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
773 GTTTTGGCCCCAAACTTGGT-AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
19936762 GCTAAAAACTCGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGT
837 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
19936809 GTCCTCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGA
1 GTCC-CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
19936874 GGGAGTGTGAGTTCTCGAGGTTTGATGAGAAATAGGGGGCCAATATAAGGGCCAAGTACCAGCAG
65 GGG-GTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* *
19936939 CCATCGCACATCATGTGCGCACACCCGCC-GGCCCCCC-ATCGTCGGAACCCTAATGCCGTCGGT
129 CCATCGCACATCATGTGCGCACACCC-CCTGGCCCCCCGATCGTCGGAACCCCAATGCCGTCTGT
* * * *
19937002 CA-GGT-TCTCCGACGA---TACTCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
193 CAGGGTCTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
** *
19937062 GCATGTGCT-ATCGCAACCCTC-G---G---G--C-----C--GG--T---CT--G-AT-CTTAG
258 GCATGTGCTGCCCGTAACCCTCGGCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* *
19937101 ACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAGCTGGCC
323 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * *
19937165 AGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGATCCCCCTCTGTGTGCTACCGATTCTGCTA
388 AGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTG
* * *
19937230 TCGTAACCCTCGATCTGGTCTGATC-TAGACTGGGAATGAACTCCTTATGCCTAAGCCAACCGAT
453 TCGCAACCCTCG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * *
19937294 GAAACAAGCGGGCGGGCGGGCGGACGGGTACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
517 GAAACGAGCGGGCAGGCGGGC--AC---TACGAC--CGACCAGAGAGACGGGATGCGCAAGCCGT
19937359 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
575 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* * *
19937424 ATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGGTTCATGGCAAGACGACTC
640 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTC
* * *
19937489 GTTTTCTATTTTTTATG-ATTTTCGAAACTTTTTGCGGTTAGAGATTTTTTAAAATTTTTTCGGA
705 ATTTTCTATTTTTCATGAATTTT-GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGA
* * * * * *
19937553 AGCAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATCTTTGTTCGCACGCACAAAACAAT
769 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
19937618 TCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
834 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
19937668 GTCCCCATTTCAGACACTGTAATGGCTACTGGCGGCAAACCTGTAAAATCTCAAATGCTCTTTAA
1 GT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
19937733 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGTATAGGGGGCCAATATAAGGGCCAAGCACCAGCAC
65 -GGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * *
19937798 CCACCACACATCATGTGCGCACACCCCCTGACCCCCCAATCGTCGGAACCCCAATGCCGACTGTC
129 CCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCGATCGTCGGAACCCCAATGCCGTCTGTC
* * *
19937863 AGGTTCTCCGGTGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCC
194 A-G------GGT-CT-CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * *
19937928 CGAGTCGAGCATGTGCTGCCAC--AACCCTCGGTCATGTTCGATCTTAGACTGGGAATGAACTCC
250 CGAGCCCAGCATGTGCTGCC-CGTAACCCTCGGCCA-GTTCGATCTTAGACTGGGAATGAACTCC
* * * *
19937991 GTATGCTTAGACTGGGAATGAATTCCTTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGC
313 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGC
* * * **
19938056 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCAAGGATCGAGT-GGGTCCCCCTCTGCTTGCTGT
378 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGA-TCGGGTCCCCCTCTGCGTGCTAC
* *
19938120 CGATCCTGCTGTCGTAACCCTCCGTCTGGTCGGATCTTAGACTGGGAATGAACTCCGTATGCCTA
442 CGATCCTGCTGTCGCAACCCT-CGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
19938185 AGCCAACTGACGAAACGAGCGAGCGGGCAGGCGGGCGGGCACTACG-CCGGCCAGAGAGACGGGA
506 AGCCAACCGACG-AA--A-CGAGCGGGCA----GGCGGGCACTACGACCGACCAGAGAGACGGGA
* * * * *
19938249 TGCGCAAGCCATGAATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
563 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
19938314 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATG
628 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATG
* * *
19938379 GCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAA
693 GCAAGACGACTCATTTTCTATTTTTCATGAATTTTGAAACTTTTTGCGGTTCGAGATTTTTTAA
19938443 GGTTCTTAAG
Statistics
Matches: 2187, Mismatches: 222, Indels: 196
0.84 0.09 0.08
Matches are distributed among these distances:
851 83 0.04
852 105 0.05
853 5 0.00
854 1 0.00
856 5 0.00
857 2 0.00
858 2 0.00
859 459 0.21
860 32 0.01
861 2 0.00
868 4 0.00
870 2 0.00
871 7 0.00
873 1 0.00
874 55 0.03
875 1 0.00
876 1 0.00
877 1 0.00
878 33 0.02
879 23 0.01
880 1 0.00
881 78 0.04
882 206 0.09
883 488 0.22
884 102 0.05
887 3 0.00
889 3 0.00
890 8 0.00
891 24 0.01
892 8 0.00
893 3 0.00
895 4 0.00
896 36 0.02
898 1 0.00
899 2 0.00
900 8 0.00
901 128 0.06
902 232 0.11
903 6 0.00
904 1 0.00
905 4 0.00
906 8 0.00
908 2 0.00
910 7 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (883 bp):
GTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
GGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
ATCGCACATCATGTGCGCACACCCCCTGGCCCCCCGATCGTCGGAACCCCAATGCCGTCTGTCAG
GGTCTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTGCCCGTAACCCTCGGCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
GGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGTCG
CAACCCTCGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCGGGCAGGCGGGCACTACGACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCATTTTCTATTT
TTCATGAATTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
Found at i:19938006 original size:26 final size:26
Alignment explanation
Indices: 19937970--19938022 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19937960 CATGTTCGAT
19937970 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19937996 CTTAGACTGGGAATGAATTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19938022 C
1 C
19938023 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19938702 original size:26 final size:26
Alignment explanation
Indices: 19938673--19938725 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19938663 CCAGTCCGAT
19938673 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * * *
19938699 CTTATACTGGGAATGAATTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19938725 C
1 C
19938726 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19939611 original size:26 final size:26
Alignment explanation
Indices: 19939582--19939634 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19939572 CCAGTCCGAT
19939582 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19939608 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19939634 C
1 C
19939635 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19942250 original size:26 final size:26
Alignment explanation
Indices: 19942221--19942273 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19942211 CCAGTCCGAT
*
19942221 CTTAGATTGGGAAGGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
*
19942247 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
19942273 C
1 C
19942274 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:19943090 original size:898 final size:899
Alignment explanation
Indices: 19941360--19970531 Score: 25502
Period size: 903 Copynumber: 32.4 Consensus size: 899
19941350 CTGATCCGAT
* *
19941360 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * *
19941425 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCAGGTCCCCTTCTGCATGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * ** * **
19941490 TGCTACCGCAACCCTCAGTCCAGT-TCAATCTTAGACTACGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
19941554 ACCGATGAAACGAGCTGGCGGATGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATG-GTT
195 ACCGATGAAACGAGC--G-GG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG-C
* **
19941618 AAGCCGTGGATC---------G-A--T--GTTTAGGAACATCTTCATATTTCTGCATGCCAATGC
255 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
19941669 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
320 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * **
19941734 ACGACTCGTTTTCTCTTTTTCATGATTTTCGAAACTTTTT-TGGTTCGGGATTTTTTTTAATTTT
385 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* *
19941798 TTTGAAAGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAA
450 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
* * * * *
19941862 AAAAATTCAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGACTATTCGAAAAAAGTGTTCCCAAT
515 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
19941927 TCAGACACTTTAATGGCTACTGGCTGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
580 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
19941992 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTAC
645 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
19942057 ATCATGTGCGCACACCCCCCAGG-CCCCCCGATTGCCGGAACCCTAATGCCGCCGGTCAGGTTCT
710 ATCATGTGCGCACACCCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * * * * * **
19942121 CCGATGATGCTGCGGCGATGGTGGCCCGACGAAGAAAAATGCTGCACCAGCACATCCCCGAGCAT
774 CCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
* * *
19942186 AGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGATTGGGAAGGAACTCCGTATG
839 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
19942247 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
19942312 CGGCCAGAGGGGTGGGTTGCGCAAGCCAGGGATCAGCCGGGTCCCCCTCTATGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* *
19942377 TGCTGCCGCAACCCTCGGTCTGGTCTGACCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * *
19942442 CCAATGAAACGAGCGGGCGGGCGGGCGGGCACTACGTTGGCTAGAGAGACGGGATGCACAAGCCG
196 CCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
19942507 TGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGTCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
* * * * **
19942572 TATGGCTTGTAAATTCATGCAATTGTCCTTTAAGCCTTCACGTGACGTTTTTTGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** **
19942637 CATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGA
391 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGA
* * * *
19942702 AGGTGTTTTGGCCCCAAACTTGGTAGATGTGTTCCTTGTATTTTTTTGGGCATGC-CAAAAAAAT
456 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* *
19942766 TCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
521 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
19942831 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCT
586 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
19942896 CCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCACG
651 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
19942961 TGCGCACACCCCCCAGCCCCCCCGATCATTGGAACCCCAATGCCGGCGGTCAGGTTCTCCGACGA
716 TGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* * *
19943026 TGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCAACAGCACATGCTCGAGCCCAGCATGT
781 TGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
*
19943091 GCTACCGCAA-CC-C--T-C-G---G-TC----A-T--G--T----T-CG-AT-
846 GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
19943119 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAGCCCACGAAACAAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** **
19943184 CGACCAGAGGGGCGGGATGCCCAAGTCGAGGATCGGTCGGGTCCCCCTTTGTGTGCTGTTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
*** * * * * *
19943249 TGCTATTGCAACCCTCGGTCCGGTCCGATCTTAGATTGAGG-ATGAACTTCGTATGCCAAAGCCA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCA
* * * * ** *
19943313 ACCGACGAAATGAGTGGGCGGGCAGGCAGGCAGGCACTACGCATGCCAGAGAGACAGGATGCGCA
195 ACCGATGAAACGAGCGGGCGGGC--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * **
19943378 AGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTGCATGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
19943443 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * **
19943508 CGACTCGTTTTCTCTTTTTCACGATTTTTGAAACTTTTT-CGGTTCGGGATTTTTTTTAATTTTT
386 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
19943572 TTGAAAGGAG-TTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-TAA
451 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* * * *
19943635 AAAATTCAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAATTGTTCCCAATT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
19943700 CAGACACTTTAATGGCTACTGGCTGCAAACTTGTAAAATTCTCAAATGCTCTTTAAGGGGGTGTG
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA-TCTCAAATGCTCTTTAAGGGGGTGTG
*
19943765 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTAC
645 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
19943830 ATCATGTGCGCACACCCCCCAGGCCCCCTCGATTGCCGGAACCCTAATGCCGTCGGTCAGGTTCT
710 ATCATGTGCGCACACCCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * * **
19943895 CCGACGATGCTGCGGCGATGGTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCAT
774 CCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
* *
19943960 AGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAAGGAACTCCGTATG
839 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
19944021 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * *
19944086 CGGCCAGAGGGGCGGGTTGCGCAAGCCAAGGATCAGTCGGGTCCCCCTCTACGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* *
19944151 TGCTGCCGCAACCCTCGGTCTGGTCTGACCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * **
19944216 CCGATTAAACGAGCGGACGGGCGGGCGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCG
196 CCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* **
19944281 TGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
* * * *
19944346 TATGGCTTGTAAATTCATGCAATTGTCCTTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * **
19944411 CATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGA
391 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGA
* * *
19944476 AGGTGTTTTGGCCCCAAACTTGGTAGACGTGTTCCTTGTATTTTTTTGGGCATGC-CAAAAAAAT
456 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* * *
19944540 TCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCTCCATTTCAGAC
521 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
19944605 ACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAGATGCTCTTTAAGGAGGTGTGAGTCCT
586 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
19944670 CAAGGTTTGATGAGGGATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
651 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* *
19944735 TGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCTAATGCCGTCGGTTAGGTTCT-C--CG
716 TGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* ** * * * * **
19944796 A---T-----GATGGTGTCCCGGTAAAGAAAACTACGGTACCAGCTCTTGCCTAAGCCCAGCATG
780 ATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
19944853 TGCTGCC-CAACCCT---T---G---G---TT---C---G-AT---CT--G-AT-
845 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** * *
19944881 CTTAGACTGGAAATGAACTCCGTATAACTAAGTCAAGCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * **
19944946 CGGCCAGAGGGGTAGGATGCACAAGCCGGGGATTGGTCGGGTCCCCATCTGCGTGCTTTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * **
19945011 TGCTACCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
19945076 CTGATGAAACGA----GC---C-GGTGGGCACTACGCCGGCCAGAGAGATGGGATGCCCAAGCCG
196 CCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
19945133 TGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCAATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
* *
19945198 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACAACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * ** * * * * *
19945263 TGTTTTCCATTTTTCACGATTTTCCAAACTTTTTGCGATTCAGGATTTTTTGAAATTTTTTTGAA
391 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGA
* * *
19945328 AGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCATAAAAAAAT
456 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* * * * * *
19945392 TCAGCCAAAAACTCGAAGTGTACAATATTTTGTCATCATTTGAAAAAAGTGTCCCTATATCAGAC
521 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * * * *
19945457 AATTTAATGGCTACTGGCAGCAAACCTGTAAAATATGAAATGATTTTTTAAGGGGGAGTGAGTTC
586 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG-CTCTTTAAGGGGGTGTGAGTTC
** ** * *
19945522 TCGACATTTGATGAGCCATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
650 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
19945587 GTGCGCACGCCCCCCAG-CCCCCCGATCGCCGGAACCCCAATGCCGTAGGTCAGGTTCTCCGACG
715 GTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* * *
19945651 ATGCTCCGACGATGGTGCCCCAGG-GAAGAAAAATGCGCCACCAGCACATGCTCGAGCCCAGCAT
780 ATGCTCCGACGATGGTGCCCC-GGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
*
19945715 GTGCTGTCGCAACCCTCGGTCCGGTCCGATC-T----T----A-G-ACT--G---G
844 GTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
19945755 ----GA----G--TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCCGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
19945810 CAGCCAGAGGGGCGTGATGCGCAAGTCGGGGATCGGCCGAGTCCCCCTCTATGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
19945875 TGCTGCTGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
19945940 CCGACGAAACGA--------GCGAGCGGGCACTACGCCGACCAGAGAGACGAGATGCGTAAGCCG
196 CCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* ***
19945997 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGTGTAAGAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
* * * *
19946062 CATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACAACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
19946127 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGACTTTTTAAAATTTTTTCGGA
391 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGA
* *
19946192 AGGCA-TTTTGGCCCCAAACTTGGTAGACGTGATACTTGTATTTTTGTTGGCATGCACAAAAAAA
456 AGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
19946256 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
520 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
19946321 CACTTTAATGGCTCCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTC
585 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
19946386 TCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
650 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * *
19946451 GTGCGTACACCCCCACCAGCCCCCCCGATCGTCGGAACCCCAATGTCATCGGTTAGGTTCT-C--
715 GTGCGCACA-CCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
** *** * * * * * *
19946513 CGA---T-----GATGGTGTACCGATAAAGAAAAATACAGTACCAGCTCTTGCCTGAGCCTAGCA
778 CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
* *
19946570 TGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGAGTGGGAATGAA---C---T-
843 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
19946620 C-----C-----AT--A-T--G-A---CTAAGTCAACCAACGAAAC-A-AGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
19946664 CGGCCAGAGGGGCAGGATACGTAAGTCGAGGATCGATCGGGTCCCCCTCT-CTGTGCTGCCAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTAC-GTGCTGCCGATC
* * * *
19946728 CTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
19946793 ACCGACGAAACGA--------GCTGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
195 ACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * ** *
19946850 GTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCAATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTT
* * * *
19946915 TTATGGCTTGTAAATTCATACAATTGTCCCCTAAGTCTTCACCTGAAGTTTCATGGCAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** * * *
19946980 TCGTTTTCCATTTTTCATGATTTTCAAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTTGA
390 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGG
* *
19947045 AAGGAGTTTTGGCCCCAAACTTTGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
*
19947110 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGA
520 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * * *
19947175 CACTTTAAAGGCTACTAGTAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTC
585 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
**
19947240 TCGAGGTTTGATGAGGGATAACGGGCCAATATAA-GGCCAAGTACCAGCACCCATCGCACATCAT
650 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * *
19947304 GTGCGCACA-CCCCCGGCCCCCCCGATCATCGGAATCCCAATGCCGCCAGTCAGGTTCTTCGATG
715 GTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* * * * *
19947368 ATGCTCCGATGATGGTGCCCCAGG-GAAGAAAAATGCGCCACCAGCACATGCTCGAGCCTAGCAT
780 ATGCTCCGACGATGGTGCCCC-GGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* *** *
19947432 GTGCTGTCGCAACCCTCGGTCTAATCCGATCTTAGACTGGGAATGAACTCTGTATG
844 GTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * **
19947488 CTTAGACTGGGAATGAACTCCATATGCCTAAGTTAACCCACGAAACGAGCGTATGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
19947553 CAGCCAGAAGGGCAGGATGCGCAAGCCGGGAATCGGCCGAGTCCCCCTCTATGTGCTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * ** * *
19947618 TACTGCCGCAAGCCTTGGCCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATTCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * *
19947683 CCAACAAAACAAGCGGGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAA
196 CCGATGAAACGAGC--G-GG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
19947748 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACT-TGCGAATGCC
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GTGTGCCAATGCC
*
19947812 ATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* **
19947877 TGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* *
19947942 TCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
451 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
19948007 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
19948072 CAAACACTTTAATGTCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
** **
19948137 GTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCATACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
19948202 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTTGGAACTCCAATGCC-ACTGGTCAGGTTCT
711 TCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCT
* * * * *
19948266 CCGACGACGCTCCGATGATGGTGCCCCGACGAAGAAAAATACGGCACTAGCACAAGCCCGAGCCC
774 CCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
* * * ** * *
19948331 -GACATGTGTTGCCACAACCCTCGGTTCGGTCTAATCTTAGACTAGGAATGAACTCCATATG
839 AG-CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
19948392 CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTTCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
19948457 CTGCCAG-GGGGTGGGATGCGCAAGCAGGGGATCGGCCGGGTCCGCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * *
19948521 TGCTGCCACAACCCTTGGTCTGGTCTGATCTTAGACTCGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
19948586 CCAACGAAATGAGCAGGCGGGCGGGCGGGCGGGCGGTCGGGCACTACGCCAGCTAGAGAGACGAG
196 -C--CG--ATGA--A-ACGAGCGGGCGGGC--G-GG-CGGGCACTACGCCGGCCAGAGAGACGGG
* *
19948651 ATGCGCAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-TCATG
249 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGT-GTG
*
19948715 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCA
313 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * *
19948780 TGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTA
378 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTA
* * * * * *
19948845 AAATTTTTTCGGAAGGAGTTTT-GCCCCAAAATGGGTAGACCTGATCCTTGTATTTTTGTTAGCA
443 AAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCA
*
19948909 TGCACAAAAAAATTGAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
508 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
19948974 CCCCATTTCTGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAG
573 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
19949039 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CC
638 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * *
19949103 ATCGCACATCATGTGCGCACAACCCCCCCGACCCCCCAGATCGTCGGAACCCCAATGTCGCCGGT
703 ATCGCACATCATGTGCGCAC-A-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGT
* * * ***
19949168 CAAGTTCTCCAATGATGCTCCGACGATGGTGCCCCAATGAAGAAAAATACGGCACCAGCACATGC
766 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGC
* * * * * *
19949233 CCGAGCCCAGCATGTCCTATCC-CAACCCTCAGTCCAGTCTGATCTTACACTGGGAATGAACTCC
831 CCGAGCCCAGCATGTGCT-GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
19949297 GTATG
895 GTATG
* * * *
19949302 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACAAAACGAGTGCGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** *** * *
19949367 CAGCCAGATGGGCGGGATGCATAAGTTAGGGATCGGTCGGGTCCCTCTCTACGTGTTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
** * * **
19949432 TAATGCCACAACTCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
19949497 CCGAAGAAACGA--------GCGGGCGGGCATTACGTCGGCCAGAGACACGGGATGCGCAAGCCG
196 CCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* ***
19949554 TGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
*
19949619 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
19949684 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTCGA
391 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGA
* * *
19949749 AGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTTTTTTTTTTGGCATCCACAAAAAAAT
456 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* *
19949814 TCAGCTGAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGAC
521 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
19949879 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
586 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
19949944 CGAGATTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
651 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * *
19950009 TGCGCACACCCCCCCGGCCCCTCCGATCATCGGAACCCCAATCCCGTCGGTTAGGTTCTTCGACG
716 TGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* * * * *
19950074 ATGCTCCGACGATGGTGCCCTGGAGAAGAAAAATGCGGCACCAGCACCTGCCTGAGCCCAGCATG
780 ATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
19950139 TGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG
845 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
19950194 CTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** *
19950259 CGGCCAGAGGGGTGGGATGCACAAG-CGAGGG-TCGGCCGGGTCCCCCTCTGTGTGCTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCG-GGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATC
* * ** * * * *
19950322 CTGCTACTGCAACCCTCATTCCGAT-TCAATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCC
130 CTGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
19950386 AACCGATGAAACGAGCGGGCGGTCGGGCGAGCACTACTCCGGCCTA-AGAGGCGGGATGCGCAAG
194 AACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC-AGAGAGACGGGATGCGCAAG
* * *
19950450 TCATGGATCGATAGGGTGGTAGTTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT
258 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT
* * * *
19950515 TTTTATGGCTTGTCAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGATG
323 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * * * *
19950580 ACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCAGTTCAGAATTTTTTAAAATTTTTTC
388 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTT
* * * * * * * *
19950645 GCAAGGATTTTTGGTCCCAAACTTGGTATACGTGATGCTTATATTTTTGTTGGCATGCACAAAAC
453 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* *
19950710 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
**
19950775 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGTATGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
19950839 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCACCGCACATC
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
19950904 ATGTGCGTACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
713 ATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * ** * * *
19950969 CGATGCTCTGGCGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAACA
778 CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * * *
19951034 TGTGCTGTCGTAACCCTCGATCTGGTCTGATCTTACACTAGGAATGAACTCCGTATG
843 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** * *
19951091 CCTAGACTGGGAATGAACTTTGTATGCCCAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
19951156 CGGCCAGAGAGGCGGGATGCGTAAGCCGGGGATCGATTGGGTCCCCTTCTACGTGCTACCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * ** ** *
19951221 TGCTGCCGTAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
19951286 CCGATGAAACGAGCGGGCGGGC--AC---CAC-A--CCGGCTAAAGAGACGGGATGCGCAAGCCG
196 CCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
19951343 TGGATCGATAGGATGGTAGGTGGGTTTAGGCACATATTCATATTTCTGTGTGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
19951408 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
19951473 CATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
391 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGA
*** * * * * *
19951538 AGGAGTTTTGAAACCAAACTTGGTAGACATGAACCTTGTATTTTTGTTGGCATGCAGAAAACAAT
456 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* * *
19951603 TTAGCTAGAAACTGGAATTTGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTC
521 TCAGCTAAAAACTCGAA---GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTC
* * * * * *
19951668 AGACACTTTAATAGCTACTGGTAGCAAACCTGTAAAATCTCGACTGCTCTTTAAGGGTGTGTGGG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
19951733 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGTGCCAAGTACCAGTAACCATCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
19951798 CATGTGCGCACACACCCCTC-CCAACCCCCCGATCATCAGAATCCCAATGCTGTCGGTCAGGTTC
712 CATGTGCGCACAC-CCCC-CGGC--CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * *
19951862 TCCGGCGATGCTCC-AGCGATGGTGCCCCGACGAAGAAAAATACGGCACCACCACATGCCCGA-C
773 TCCGACGATGCTCCGA-CGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* ** *
19951925 CCAGCATGTGCTGCCGTAACCCTCAATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATG
837 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
19951988 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * *
19952053 CGGCCAGAAGGGTGGGATGCGCAAGCTGGGGATCGACCTGGTCCCTCTCTACGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * ** * *
19952118 TGCTGCCACAACCCTTGGTCCAGTCTGATCTTAGACTAGCAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
19952183 CCGACGAAACGAGCGGGCAAGCGGAAGGGCGGGCACTACACCGGCCAGAGAGACAGGATGCG-AA
196 CCGATGAAACGAGCGGGC--G-GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * **
19952247 GCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTGCATGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
*
19952312 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** * * *
19952377 GACTCGTTTTCTATTTTTCATGATTTTCAAAATTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
387 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
19952442 GGGAAGGCGTTTTGGCCCCAAACTTGGTAGACGTGAT-CTTGTATTTTTGTAGGCATGCATAAAA
452 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * * ** *
19952506 GAATTCAGCTAAAAACTTGAAGTGTACATGATTTTACGACCATTTGAAAAAAGTGTCCCCATTTT
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
19952571 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
19952636 TTCTTGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
19952701 CATGTGCGCATACCCCCTCGGCCTCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
712 CATGTGCGCACACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
** * * * *
19952766 GGTGATGCTCTGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACTTGCCCGAGCCCAG
776 GACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
** * * * *
19952831 CATGTGCTGTTGCAACCCTCAGTCCGGTCCGATATTAGACTGGGAATGAACTTCGTAAG
841 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * ** *
19952890 CTTAGACTTGGAATGAACTCCGTATGCCTATGTCAAACCACGAAATGAGCGTGCGGGCATTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** * * ** *
19952955 CGACCAGAGGGGCTGGATGCGCAATCCGAGGATCGACCGGGCCCCCCTTTGTGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * *
19953020 TGCTACCGCAACCCTCAGTCTGATCCGACCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
19953085 CCGACGAAATGAGTGGGCGGGTGGACGGGCACTACTCCGACCAGAGAGACGGGATGCGCAAGCCA
196 CCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC-
* * *
19953150 G-GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATATGTGCGTGCCAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTT
* *
19953214 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACAAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
** * * * * *
19953279 TCGATTTT-TATTTTTCATGATTTTCAAAACTTTTTATGATTTGGGATTTTTTCAAATTTTTTCG
390 TCG-TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTG
* * * * *
19953343 GAAGGAGTTTTGGCCCCAAACGTGGTAGACATGATCCTTGTATTCTTATTGGCATGCATAAAAAA
454 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
* *
19953408 ATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAG
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
19953473 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
19953538 CTGGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
649 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
19953603 TGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAAACCCAATGCCGCCGGTCAGGTTCTCCGG
714 TGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * * * * *
19953668 TGATGCTCGGACGATGGTGCCCCGTCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCTGAA
778 CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
* * * ** * * * *
19953733 TGTGCTGTCGTAAGCCTCAATCTGGTCTGATCTTAGACTGGAAATGAACTCCATATG
843 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
19953790 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * ** * * * * *
19953855 TAGCCAGATGGGCAGGATGCGCAAGTTGGGGATCGGCCAGGTCCCCCTCTGCATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
19953920 TACTGCCACAACCCTCGGT-TCAGTCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * *
19953984 ACTGACGAAACGAGCGGGCGGGCGAGCGTGCAGGCTCTATGCTGGCCAGAAAGACGGGATGCGTA
195 ACCGATGAAACGAGCGGGCGGGC--G-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * *
19954049 AGTCGTGAATCGATAGAGTGGTAGGTGGGCTTAGGCACATCTTTATATTTCTGTGTGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
* *
19954114 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGTAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * ** *
19954179 CGACTCATTTTCTATTTTTCATGATTTTTTAAACTTTTT-TGTGATTCAAGATTTTTTATAATTT
386 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG-G-TTCGGGATTTTTTAAAATTT
* * * * *
19954243 TTTGGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTATATTTTTTTTAGCATGCACA
449 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
* * * * * *
19954308 AAAAACTTCAACTAAAAATTGGAAGTGTACAAGATTTTGGGACCATTTGAAAAAGGTG-CCCCAT
514 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
19954372 TTCAGACACTTTAATGGCTA-TGCCAGCAAACCCGTAAAATCTCTAATGCTCTTTACGGGGGTGT
579 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
19954436 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTAGCCATCGTA
644 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
19954501 CATCATGTGTGCACACCCCCCGACCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCT
709 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * * *
19954566 CCGGCGATGCT-CTAGCAATGGTGCCCCAGCGAAGAAAAATACGGCACCAGCAAATGTCCGAGCC
774 CCGACGATGCTCCGA-CGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
* * * * *
19954630 CAGTATGTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTCGAAATGAACTCCGTATG
838 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
19954692 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
19954757 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTGCCCCTCTACGTGCTGTCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
19954822 TGCTGCTGCAACCCTCGATCTGATTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
19954887 CCGATGAAACGAGCGGACGGGCGGACAGGCGGGCACTACGCGGGCCAGAGAGATGGGAAGCGCAA
196 CCGATGAAACGAGCGGGCGGGC-G---GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
19954952 GCCGTAGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCGTCCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
* * *
19955017 TTTTTATGGCTTGTAAATTCATACAACGATCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
19955082 -ACTCGTTTTCTATTTTTCACGATTTTTGAAACGTTTTACCGTTCGGGATTTTTTAAAATTTTTT
387 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
** *
19955146 TGGAAGGCCTTTTGGCCCCAAACTTGTTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
452 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * *
19955211 AAATTCAGCTAAAAAATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
19955276 AGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCTAATGCTCTTTAAAGGGGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
19955341 TTCTCGAGGATTGTTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTAGCCATCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
19955406 CATGTGTGCACACCCCCCCGACCCCCCCGATTGTCGAAACCCTAATGCCGCCGGTCAGGTTCTCC
712 CATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * *
19955471 GACGATGCT-CTAGCGATGGTGCCCCAGCGAAGAAAAATACGGCACCAGCAAATGTCCC-AGCCT
776 GACGATGCTCCGA-CGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATG-CCCGAGCCC
* * * * *
19955534 AGTATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTCGAAATGAACTCCGTATG
839 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
19955595 CTTAGACTAGGAATGAACTCCTTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
19955660 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTGCCCCTCTACGTGCTGTCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
19955725 TGCTGCTGCAACCCTCGATCTGATTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
19955790 CCGATGAAACGAGCGGGCGGGCGGACAGGCGGGCACTACGCGGGCCAGAGAGACGGGAAGCGCAA
196 CCGATGAAACGAGCGGGCGGGC-G---GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
19955855 GCCGTAGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCGTCCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
* * *
19955920 TTTTTATGGCTTGTAAATTCATACAACGATCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
19955985 -ACTCGTTTTCTATTTTTCACGATTTTTGAAACGTTTTACCGTTCGGGATTTTTTAAAATTTTTT
387 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
** *
19956049 TGGAAGGCCTTTTGGCCCCAAACTTGTTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
452 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * *
19956114 AAATTCAGCTAAAAAATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
19956179 AGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCTAATGCTCTTTAAAGGGGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
19956244 TTCTCGAGGATTGTTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTAGCCATCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
19956309 CATGTGTGCACACCCCCCCGACCCCCCCGATTGTCGAAACCCTAATGCCGCCGGTCAGGTTCTCC
712 CATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * *
19956374 GACGATGCT-CTAGCGATGGTGCCCCAGCGAAGAAAAATACGGCACCAGCAAATGTCCC-AGCCT
776 GACGATGCTCCGA-CGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATG-CCCGAGCCC
* * * * *
19956437 AGTATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTCGAAATGAACTCCGTATG
839 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
19956498 CTTAGACTAGGAATGAACTCCTTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
19956563 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTGCCCCTCTACGTGCTGTCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
19956628 TGCTGCTGCAACCCTCGATCTGATTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
19956693 CCGATGAAACGAGCGGGCGGGCGGACAGGCGGGCACTACGCGGGCCAGAGAGACGGGAAGCGCAA
196 CCGATGAAACGAGCGGGCGGGC-G---GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
19956758 GCCGTAGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCGTCCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
* * *
19956823 TTTTTATGGCTTGTAAATTCATACAACGATCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
19956888 -ACTCGTTTTCTATTTTTCACGATTTTTGAAACGTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
387 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
19956952 TGGAAGGCGTTTTGGCCCCAAACTTGTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
452 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * *
19957017 AAATTCAGCTAAAAAATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTCTCCCCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
19957082 AGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
19957147 TTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
19957212 CATGTGTGCACACACCCCTCCTGACCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCT
712 CA--TGTGCGCACACCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * * * *
19957277 CCGGCAATGCTCC-AGCAATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACAGGCCCAAGCC
774 CCGACGATGCTCCGA-CGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
* * * * * *
19957341 TAGCATTTGCTGCCGCAACCCTTGATCCAGTCCGATCTTA-ACTGGGAATGAACTCTGTATG
838 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
19957402 CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAACGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * ** * * **
19957467 CAGCCAGAAAGGCGGGATGTGCAAGCTAAGGG-TCGGTCGGGTCCCCCTCTGCGCGCTGTTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGC-CGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATC
* * * * *
19957531 CTGGTACTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
19957596 ACCGACGAAACGA----GCGAGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCC
195 ACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * ** **
19957657 ATGGATCGATAGGGTTGTAGAT-GGTTTAGGCACATCTTCATATTTCTGAATGCCAATGGTATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTT
*
19957721 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
19957786 TCGTTTTCTATTTTTCATGA-TTTTCAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGG
390 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGG
* * *
19957850 AAGGATTTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTGTTTTTTTTGGCATGCACAAAAAAA
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
* * * *
19957915 TTCAGCTAAAAACTCGAAGTGTACAATATTATGTGTCCATTTGAAAAAAGTGTCCCCATTTCAAA
520 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
19957980 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTTTTTAGGGGGGTGTCAGTTC
585 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
19958045 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCCAGTACCAGCACCCATCGCACATCAA
650 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * ** *
19958110 GTGCGCACACCCCCTCCGGCCCCCTCGGTCG-CTGGAACCCCAATGCCACCGGTCAGGTTCTCTG
715 GTGCGCACA-CCCC-CCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* ** * * ** *
19958174 GCGATGCTCCGGTGATGTTGCCCCGGCGAAGCAAAATGTGGCACCAGCACAAGCCCGAGCCCAGC
777 ACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
*
19958239 ATGTGCTGCCGCAA-CC-C--T-CAGTCCGATC-----C---G-AT---CT---TA-G
842 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * **
19958276 --T---CTGGGAACGAACTCCGTATGCCTAAGTCAACCAACAAAACGAGCGTGCGAGCGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
19958336 CGGCCAGAGAGGCGGGATGCGTAAGCCGAGGATCGG-CCGATCCCCTTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * *
19958400 TGCTACCACAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
19958465 CCGACGAAACGA----GCGGGCGGG-TGG-AC-A-GCCAGCCAAAGGGGCGGGAT-TGCAAGCCG
196 CCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * ** *** ** * * * * ** *** **
19958521 GGGATCAACCGGGTCCCCATCTGCGTGCT-GTCGATCCTGCTGTCGCAACCCTCG-GT-CCGGT-
261 TGGATCGATAGGGT-GGTAGGTGGGT-TTAGGC-A-CAT-CT-TCATATTTCT-GTGTGCCAATG
* * * * * *** * * **
19958582 CTGATCTTAGATTGGGAATGAACTCTGT--ATGCCTAAGCCAACCGACGAAAC-GAGCGGCCGGA
319 C-CAT-TT---TT----ATG-GCT-TGTAAATTCAT-A--CAA-TG--GTCCCTTA--AGCC-TT
* * * * ** *** * ** ** ***
19958644 CGGGCGGGCAAGCACTACATAGGCCAGAGA-GACGGGATGCGCAAGTCGTGGATCGATAGGGTG-
364 C--ACGTG-AAG--TTTCAT-GG-CA-AGACGACTCG-TTTTCTA-TTTTTCAT-GAT-TTTTGA
* *** * * * ** * * * ** * * * ****
19958707 --GTAGGT-GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAATTTTTTGGTTGTAAA
417 AACTTTTTACGG-TTCGGGATTTTTTAAAATTT-T-TTTG-GAA-G--GA-GTTTTGGCCCCAAA
** * * * * * * * ** *** * *
19958769 -TTCATACA-ATGGTCCCT-TA--------AGCCTTCACGTGAAGTTTTACGGC-AAGACGACTC
474 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-AAAAAAATT-CAGCTAA-A-AACTC
* * * * * * * *** * * *
19958822 GTTTTCTATTTTTCATGATTTT-TGAAACCTTTTG----CAGT-TCGAGATTTTTTA-AAATTTT
535 G-----AAGTGTACAAGATTTTGTG--ACCATTTGAAAAAAGTGTCCCCA--TTTCAGACA---C
** * * * * * ** ** **
19958880 TTTGGAA-GGCATTTTGGC-GCCAAACTTGGT-AGA-CGCGAACCT-CGTATTTTTGTTGGCATG
588 TTT--AATGGC-TACTGGCAG-CAAACCT-GTAAAATCTC-AA-ATGC-TCTTTAAGGGGGTGTG
***** ** * * *** * * ** * ** * * * ** **
19958940 CA--AAAAAAAATTTAACTAAAAACATGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
645 -AGTTCTCGAGGTTTGA-T-GAGGGAT-AGGGGGCCAATA-TAAG-GGCCA--AG-TACCAG-CA
* * * ** ** *** ****** * **
19959003 CCGCATTTCGGACACTTTAATG-GC-TACTTGCAGCAAACCTATAAAATC-TC-AAATGCTCTTT
700 CC-CA--TC-G-CAC-ATCATGTGCGCAC-ACCCCCCGGCCCCCCCGATCGTCGGAA--C-C-CC
* ** * * * * * * * * * ****
19959064 AAGGGGGT--GTGA-GTACT-CAAAGTTTGAT--GAGGGATAGG-G----GGCCAATATAAGGGC
754 AATGCCGTCGGTCAGGTTCTCCGACG-ATGCTCCGA-CGAT-GGTGCCCCGGCGAAGA-AAAATA
* * * * * * * *** *
19959118 CGAGTACCAG--CA--CCCGTGGCACATCATGTGC-G-CACACCCCCCGG-CCCCCCCGATCGTC
815 CG-GCACCAGCACATGCCCG-AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC-TT
* *** * * *
19959176 GGAAC-CCCAATG-CCGTCGGTCAGGTT
877 AG-ACTGGGAATGAAC-TCCGT-A--TG
* * * *** * * * **
19959202 CTCCGACGATGCTCCGGCG-ATGGTAC-CCTAGTGAAGAAAAATTTGGCATCAGCAC-ATGCCCG
1 CT--TA-GA--CT--GG-GAAT-GAACTCC--GT-ATGCCTAA---GTCAAC-CCACGA--AACG
** ** * * *** **** ** * * *
19959264 AGCCCAGCATGTGCTGCAACAAC-GCTCAGTCTGGTTCAAT-C-TTAGACTGGGAAT-GAACTCC
48 AG-CGTGCGGGCGCT-CAGC--CGGC-CAGAGGGGCGGGATGCGCAAG-CCGGGGATCG--GT-C
** *** * *** * * * * * * *** *
19959325 GTTTGCCTAAGTCAACCCAC-GAAACGAGCGTGCAGGCGCTCAACCGGC-CAGAGAGG-CGGGAT
104 GGGT-CC-CCCTCTACGTGCTG--CCGATCCTGC-TGC-CGCAACC--CTCGGTCTGGTC-TGAT
* * * * * * * * ** * * **
19959387 GCGTA-AGTCGGGGATCGGCCAGGAC-CTCGTCTGTGTCCT-ATCGATCCTGCTGCTACAACCCT
160 -CTTAGACT-GGGAAT--G--A--ACTC-CG--TATG-CCTAAGCCAACC-GATGAAACGAGCGG
** ** ** * * * ** * * * *
19959449 TAGTCCGTTC-TG-ATCTTA-GACTAGG-AATGA-ACTCCGTATGC-CTAAGCCAACTGACGAAA
212 GCGGGCGGGCGGGCA-C-TACG-C-CGGCCA-GAGAGACGGGATGCGC-AAGCC--GTG--G-AT
** * * ** *
19959508 CGAGCGGGCACTACGCCGACCAGAGAGTCGGG-AT-GCGCAAGCCATGGATCGATAGGGTGGTCG
266 CGATAGGG---T--G--G----TAG-GT-GGGTTTAG-GC-A--CAT-CTTC-ATA---T-TTC-
* * * *
19959571 GTGGGTTTTGGTACGTCTTCATATTTCTACATGCCAATGGCATTTTTATGGGTTGTAAATTCATA
307 -T--G---T-GT--G-C--CA-A-TGCCA-T------------TTTTATGGCTTGTAAATTCATA
* * * **
19959636 CGATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACAA
345 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * * *
19959701 TTTTCGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAAC
410 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAC
* * * * *
19959766 TTGGTGGACGTGAGCCTTGTATTTTTATTGGCTTGCAC----AAA---A-C----AACTCAAAGT
475 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * * * *
19959819 GTATAAGATTTTGTGAACATTTGAAGAAAGTGTCCCCGTTTCAGACACTTTAATGGCTACTAGCA
540 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
**
19959884 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTTG-TGAGGGAT
605 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TTTGATGAGGGAT
* *
19959948 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACATCCCCCTGG-
669 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGC
* * * *
19960012 CCCCCCGATCATCGGAACCCCATTGCCG-C---C-GG---T-C-AAG-TTCTCCGACGATGGTGC
733 CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
* * * * *
19960066 CCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCTAGCATGTGCTACCGCAACCCTCGG
798 CCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* *
19960131 TCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
863 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
19960168 CTTAGACTAGGAATGGACTCCGTATGCCTAGGTCAACCCACGAAACGAGCGTGCGAGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** ** * ** * * * *
19960233 CAGCCAGAGGGATGAAATGCGCAAGCCAGGGATCGACCGGGTCCCCCTTTGCGTGCTACCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
** * * *
19960298 TGCTGCCATAACCTTCAGT-TCGGTCTGATCTTGGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
19960362 ATCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGACGGCTAGAGAGACGGGATGCGCAAGCC
195 ACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * **
19960427 GTAGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTT
* * * *
19960492 TTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATAAAGTTTCATGGCTAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * ** * *
19960557 TCATTTTCTCATTTTT-ACGATTTTTGAAACTATTTGGGGTTCGAGATTTTTTAAAATTTTTTCG
390 TCGTTTTCT-ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTG
* * * *
19960621 GAAGGATTTTTGGCCCAAAACTTGGAAGACGTGATCCTTGTATTTTTTTTAGCATG-ATCAAAAA
454 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-CAAAAA
* *
19960685 AATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTCTCCCCATTTCA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
19960750 GACACTTTAATAGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
19960815 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATC
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * *
19960880 ATGTGTGCACACCCCCCCGACCCCCCTATCATCGGAACCCCAATGTCGTCGATCAGGTTCTCCGA
713 ATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * *
19960945 CGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCTC-AGCCCAGCA
778 CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * *
19961009 TGTGCTGTCGCAACCCTCGGTCCGATCTGACCTTAAACTGGGAATGAACTCCGTACG
843 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** * * * *
19961066 GTTAGACTACGAATGAACTCCGTATGCTTAAGTCAATCCACGAAACGAGTGTGCTGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
19961131 CGGCCAGAGGGGTGGGATGCGTAAGCCGGGGATTGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* *
19961196 TGCTGCCGTAACCCTCGGTCTGGGCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
19961261 CCGACGAAACGAGCTGGCGGGCGGACGAGCGGGCACTACGCCGG-TATAAGAGACGGGATGCGCA
196 CCGATGAAACGAGCGGGCGGGC-G--G-GCGGGCACTACGCCGGCCA-GAGAGACGGGATGCGCA
* * * ***
19961325 AGCCGTGGATCGATAGGGTTGTAAGTGGGTTTAGGCACATCATCATATTTCTACATGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
*
19961390 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
19961455 CGACTCGTTTTCTATTTTTCACGATTTTTGAAAGTTTTTACGGTTCGAGATTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * *
19961520 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCAAAAA
451 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* ***
19961585 AAAATTCAGCT-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTTTGCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
19961649 CAGACGCTTTAATGGCTACTGACAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
19961714 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
19961779 TCATGTGCGCACACCCCCCCGGCCCCCCCGATC-ACTAGAACCCCAATGCCGTCGGCCAGGTTCT
711 TCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * *
19961843 -CTAGCGATGCTTCGACGATGGTGCCCCGACGAAGAAAAAGACGGCACTAGCACATGCCCGAGCC
774 CCGA-CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
* * * *
19961907 CAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCAATATTAGACAGGGAATGAACTCCGTATG
838 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** * *
19961969 CTTAGACTAGGAATAAACTCTATATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * * * *
19962034 CGACCAGACGGGCGGGATGCGCAGGCCGGGGATCGACCGGGTCCTCTTTTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * ** *
19962099 TACTGCCGTAACCCTCGATC-CATCTGATCTTAGTCTGGGAATGAACTCCGTATGCTTATACTAG
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC-----CT--
* * * ** * * * * * *
19962163 GAAG-GAACTCCATATGTCTAAGTCAACCCA-CGAAACGAGTGTGCGGGCGCT-CAACCGACCAG
189 -AAGCCAA--CC-GATG----A---AA-CGAGCG-GGCGGGCGGGCGGGCACTAC-GCCGGCCAG
* * * * * * ****** * * * *
19962225 CGGGTCGGGATGCGGAAGTCAGT-AATCGACT-GGGTCCCCCTCTGCGTGCTA-CCGATCTTGCT
240 AGAGACGGGATGCGCAAG-CCGTGGATCGA-TAGGGT-GGTAGGTGGGT-TTAGGC-A-CAT-CT
* * *** ** *** * * * * * * ** * *
19962287 GCAGGAACCCTCAGT-CTGGT-CCAATCTTA-GACTAG-GAA-TGA-ACTCTGTATGCC-TAAGC
298 TCA-TATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG-GTCCCTTAAGC
** * * * ** *** * * * ***** * **
19962345 CAAC-CGACGAA-----ATGAGCGAG-CGGGCGGGTGGGC-A--CTACACCGGCCAGTGAGACGG
361 CTTCACG-TGAAGTTTCATG-GCAAGAC-GACTCGTTTTCTATTTTTCA-TGATTTTTGAAACTT
** * * *** * * * * * **
19962400 GATGCGCAAG-CCGTGGA-TCGAT-AAA-----GTGGTAAGTGGGTTTAGG-CAC-ATCTTCATA
422 TTTACG---GTTCG-GGATTTTTTAAAATTTTTTTGG-AAG-GAGTTTTGGCCCCAAACTTGGTA
**** * ** * * * * * * **
19962455 TTTATGCATGCCAATGCCTTTTTTATGGCTTGTA-AATTCATACAATGGTC-CCTTAAGCCTTC-
481 GACGTG-AT-CC-TTGTATTTTTTTTGGCATGCACAA---A-AAAAT--TCAGCTAAAAAC-TCG
* * * * *** ***** * **** * * * *
19962517 ACGTG---AAG-TTTCGTGGCGAGACG-ACTCCTTTTCTATTTTTCA-AGATTTTCGAA--ACTT
536 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT--AATGGCTA
* * *** * * * * * *
19962574 TTTGCAGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGT-TTTGGCCCCAAACTTGGTAGATGT
599 CTGGCAG--C-A-AACCTGTAAAA---TCTCA-AATG-CTCTTT-------AA---GG-GGGTGT
* * ** *** * **** * * **
19962638 GA-TCCTTGTATTTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAG-AT
644 GAGTTCTCG-A---GGTTT-G-ATG-A-GGGA-TAGGGGGC-CAATA-T--AAG-GGCCAAGTA-
*** * * * ** * * ***** ** *
19962701 TTTGTGA-CCATTTG-AAAAAAGTGTCCCCATTCCAGACATTTTGATGCCTCCTGGCAGCAAACC
694 CCAG-CACCCA-TCGCACATCA-TGTGCGCA---C--ACCCCCCG--GCC-CC---C--CCGATC
** * * * * ** * * * * *
19962764 TGT-AAAATCTCAAATGCTCTTTAAAAGGGTGTGAGTTCT-AGAGGTTTGAT--GAGGGATAGG-
743 -GTCGGAA-CCCCAATGC-C-GT----CGGTCAG-GTTCTCCGACG-ATGCTCCGA-CGAT-GGT
* * * * * * * * * ** *
19962824 G----GGC-CA-ATATA-AGGGC-CAAGTACCA-GCACCCATCGCACATCATGTGC-G-TACACC
796 GCCCCGGCGAAGAAAAATACGGCACCAGCA-CATGC-CCGA--GCCCAGCATGTGCTGCCGCAAC
* *** * * *** * *
19962878 CCCCGG-CCCCCCCGATCATCGAAAC-CCCAATG-TCGTCGGTCA-G
857 CCTCGGTCCGGTCCGATC-T-TAGACTGGGAATGAAC-TCCGT-ATG
* ** * * * * * * *** * * *
19962921 GTT---CTCCG-ACG-A-TGC-TTTGGCGATGGTGC--CCCATCG-AA-GAAAAATAC-GACAC-
1 CTTAGACTGGGAATGAACTCCGTATGCCTA-AGT-CAACCCA-CGAAACG-AGCGTGCGGGCGCT
** * ** * * * * * * ** **
19962973 CAGCATATGCCCGA-GCCCAGCATGCTCCA-CC--GCAACCCTC-GGT-CCGGTCT--GAT-CT-
62 CAGC--CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACG-TGCTG
** * *
19963028 TAGA--CTG--G--G-AA---T-GAGCTCT-GTATG--CTTAGACTGGAAATGAACTCCGTATGC
124 CCGATCCTGCTGCCGCAACCCTCG-G-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* ** * * * * * * * * *
19963079 CTATGTAAACCCA-CAAA--A-CGAGCGTGTGGGC--GC-TTA-GTCGGCCAGA-AGGGCAGGAT
187 CTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA-GACGGGAT
* * * * * * * * * *
19963135 GTGCAAGTCGGGGATCGGTCAGGTCCCCCTCTGCGT-GCTGCCGATCCTACTGCCGCA-ACCCTC
251 GCGCAAGCCGTGGATCGAT-AGG-------GTG-GTAGGTG--GGT-TTA--G--GCACATCTTC
* * ** * *** * * * *** *
19963198 AGTCTGGTTCGATCTTAGACTGGGAATG-AACTCCGTATGCCTAAGCCAACCGACGAAACAAGTA
300 A-TAT--TTC--T-GT-G--TGCCAATGCCA-TTTTTATGGCT-TG-TAA-ATTC-ATACAA-T-
* * * ** * ** * * ***
19963262 GGCGGGCGGGCGGGCACTACGCCGGC-CAGAGAGACG--AGATGCGCAAG-CTG--TGGATCGAT
349 ---GGTC---C---C-TTAAGCCTTCAC-GTGA-A-GTTTCATG-GCAAGAC-GACTCGTTTTCT
* ** ** * ** * * *** * * **** *** * *
19963321 AGGGTGGT-AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGATT
399 A--TTTTTCA--TGATTTTTGAAAC-TTTTTACGGTTCGGGAT-TTTTTAAAATTTTTTTGGA-A
* * * * ** * * *
19963385 GTAAATTCATACAATGG-TCCATTAAGCCTTCACGTCAAGTTTCATGGCAAGATAACTCGTTTTC
457 G-GAGTT--T----TGGCCCCA--AA--CTT---G----G--T-A-GACGTGAT-CCTTGTATT-
* **** **** ** * *** ** * * *
19963449 TATTTTTAATG-ATTTTTGAAACTTTTTGTGGTTCAAGATTTTTTTAAATTTTTTCGGAAGGATT
498 T-TTTTT--GGCA-TGCACAAAAAAATT-CAGCT-AA-A--AACTCGAA-GTGTAC--AA-GATT
* ** * * * ** ** * **
19963513 TT-TGGCCCCAATCTTGGTAGATGTGAT-CCC-TGT---A-TTTTTTTTGGC-A-TGCACAAAAA
550 TTGT-G-ACC-AT-TTGAAAAAAGTG-TCCCCATTTCAGACACTTTAATGGCTACTG-GC-AGCA
* * * * ** * ** * * * *
19963569 AATTCAGCTAAAAACTCAAA-G-TGTACAA---GAT-T-TTTTCACCA--TTTGA--A--AAAAG
608 AA-CCTG-TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* ** * * *** * * * * ** *
19963621 TGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACC-T-GTAAAATCTCAAATGCTCTT
671 GGGGCCAATAT-AAGGGC--CAA--G-TAC---CAGC-ACCCATCG-CACA--TCATGTGCGC--
****** **** * * * * *
19963684 TA-AGGGGGTGTGAGTTCTCGAGGTTTGATCAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
721 -ACACCCCCCG-GCCCCCCCGA---TCG-TC--GGA-A----CCCCA-AT----GCC--GT--CG
*** * * * ** * **
19963748 G-CACCCATCGCAC-ATC-ATG-TGCGCAC-ACCCCCCGGCCCCCCCGATCGTCGAAACCCAATG
764 GTCA-GGTTCTC-CGA-CGATGCTCCG-ACGA-----TGG-TGCCCCG-GCGAAGAAA---AAT-
* ** * *
19963808 GCACCGGTCAGGTTCTCTG-ACGATGGTGCCCCGACGAAGAAAAATGCAGCACGAGCACATGCCC
814 --A-CGG-CA----C-CAGCAC-A---TG--CC--CG-AG-----CCCAGCATGTG--C-TG-CC
* * * * *
19963872 GAGCCCAACATGTGCTGCCGGAACCCTCGGTTCGATCCGATTTAGATTGGGAATGAACTCTGTAT
852 --G--CAAC----CCT--CGG---TC-CGGTCCGAT-C---TTAGACTGGGAATGAACTCCGTAT
19963937 G
899 G
19963938 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
19964003 CGGCCAGAGGGGCGGGATGC-CAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
** * *
19964067 TGCTGCCGCAACCCTTAGACCGGT-TAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
19964131 ACCGATGAAACGAGCGGGCGGGCGAGCGGGCACCACGTCGGCCAGAGAGACGGGATGCGAAAGCT
195 ACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
19964196 GTAGATCGATCGGGTGGTAGTTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTT
19964261 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGA-GA
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA-GACGA
* * **
19964325 CTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTGCGGTTCGGGATTTTTTAAAATTTTTTCA
389 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTG
* ** * * *
19964390 GAAGGCGTTTTGGAACGAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAA
454 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
* * * * * * *
19964455 ATTCAGCTAAAAACTCAAAGTGTATAAGATTTTGGGACCATTTGAAAAACGTGTCCCTATCTCAA
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
19964520 ACACTTTAATGGCTACCGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
19964585 CTCGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCATGTACCAGCACCCTTTGCACATCA
649 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
19964650 TGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAAGTTCTCCTG
714 TGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-G
* * ** **
19964715 -TGATGCTCCGGCGATGGTGCCCCAACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
777 ACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
** * * ** * * *
19964779 ATGTGCTAACGTAACCCTCGCTCTAGTCCGATGTTAGACTAGGAATGAACTTCGTATG
842 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** *
19964837 CTTAGACT-GGAAAGAACTCCGTATGCCTAAGTCAACCCATGGAACGAGCGTATGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
19964901 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCAGTCGGGTCCCCCTCTTCATGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * ** *
19964966 TACTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
19965031 CCGACGAAACGA----GCGAGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCG
196 CCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *** *
19965092 TGGATCGATAGGGTGGTAGGTGGGTTTAGTCACATCTACATATTTCTACATGCCGATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
* *
19965157 TATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * * *
19965222 CGTTTTCTATTCTTCACGATTTTTTAAACTTTTTACAGTTTGGGATTTTTTAAAATTTTTTCGGA
391 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGA
* * *
19965287 AGGATTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAAT
456 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* *
19965352 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAC
521 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
19965417 ACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
586 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * * *
19965482 TGAGGTTTGATGATGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCTTTGCACATCATG
651 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
19965547 TGCGCACACCCTCCCTGGCCCCCTCCGATCGTCGAAACCCCAATGCCGCCGATCAGGTTCTCCTA
716 TGCGCACACCC-CCC-GGCCCCC-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * * *
19965612 TGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGA-GGCACCAGCACATGCCCGAGCCCAAC
778 CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAAT-ACGGCACCAGCACATGCCCGAGCCCAGC
* *
19965676 ATGTGCTGCC-CAACCCT-TGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
842 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
19965732 CTTAGACTGGGAACGAACTCCATATGCCTAAGTCAACCCACAAAATGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
19965797 CGGCCAGA-GGGCGGGATGCCCGC-AGCCGGGGGATCGGTTGGGTTCCCCCCCATGCAT-TTAAC
66 CGGCCAGAGGGGCGGGATG--CGCAAGCC-GGGGATCGGTCGGG-TCCCCCTC-TACGTGCT-GC
* ** **
19965859 CGATCCTGCTGCCGCAACGCCTCAGTCCAGTCCAATCTTAGAACTGGGAATGAACTCCGTATGCC
125 CGATCCTGCTGCCGCAAC-CCTCGGTCTGGTCTGATCTTAG-ACTGGGAATGAACTCCGTATGCC
** * * * * *
19965924 TAAG-CAACCGACCAAATGA----GAGGGCGGGCGGGCACTACGGCGTCCAGAGAGGTC-GGATG
188 TAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA-GACGGGATG
* * **
19965983 CGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCATGCCAA
252 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAA
* *
19966048 TTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGC
317 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* ** * * *
19966113 AAGACGACTTGTTTTCTATTTTGAACGATTTTGGAAACTTTTTACGGTTCAGGATTTTTTAAAAT
382 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * * * *
19966178 TTTCTCGG-AGAGAGTTTTTGCCGCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
447 TTTTTTGGAAG-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
* *
19966242 ACAAAAAAATTCATCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
511 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
19966307 CATTTCAGACACATTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
576 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
19966372 TGAGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
641 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
19966437 GCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGT
706 GCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
* **
19966502 TCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAG
771 TCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAG
* * ** * *
19966567 CCCAGCATGTGCTGTCGCAACCTTTAGTCCGGTCCGATCTTTGACT-GGAATGAACTCCGTAAG
836 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
19966630 CTTAGA-TAGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCATACGGGCGCTTAG
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * * *
19966694 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATC-AACTAGGTCCGCCTCTACGTTCTGTCGAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTACGTGCTGCCGAT
* * * *
19966758 CCTGCTGCTGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
19966823 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCGGTTGGGCACTACACCAGCCAGAGAGACG
194 AACCGATGAAACGA----GCGGGCGGGC--G--GGC----GGGCACTACGCCGGCCAGAGAGACG
* * * *
19966888 GGATGCGCAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCAGATCTTCACATTTTTGTGT
247 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGT
* *
19966953 GCCAATTCCATTTTTATGGCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCACGTGAAGTTTC
312 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * * ** * *
19967018 ATGGCAGGACGACTCATTTTCTATTTTTCACGATTCTCAAAACCTTTTACGGTTCGAGATTTTTT
377 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
* * * * *
19967083 AAAATTTTCTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTAGC
442 AAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGC
* * *
19967148 ATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTG
507 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
**
19967213 TCCCCATTTCAGACACTTTAATGGCTACCCGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
572 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
19967278 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
637 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * *
19967343 CATCGCACATCATGTGCGCACACCCCCATGGCCCCCTCGATCGCCGGAACCCCAATGCCGACAGT
702 CATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGT
* ** * * *
19967408 TAGGTTCTCCGGTGATGCTCC-AGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATG
766 CAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATG
* * *
19967472 CTCGAGCCCAGTATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCC
830 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
19967537 GTATG
895 GTATG
*
19967542 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * ** * ** *
19967607 CGGCCAAAGGGGCAAGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGTGTACTATCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
19967672 TGCTGCCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * **
19967737 CGGACGAAACGAGCGGGCAGGCAGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCG
196 CCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
19967802 TGGATCGATAGGGTGGTTGGTAGGTTTAGGCACATCTTTATATTTCTATGTGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
* * * *
19967867 TGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAGGACAACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * ** * *
19967932 CGTTTTCTATTTTTCACGATTCTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTCTCGGA
391 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGA
*
19967997 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-TAAAAAAT
456 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* * * * *
19968061 TCAGCTAAAAACTCGAAGTGTAGAAGATTTTTTGACTATTTGAAAAAAGTGTCCTCATTACAGAC
521 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
19968126 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCT
586 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
19968191 CGAGGTTTGCTGAGGGATGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
651 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
** ** * *
19968256 TGCGCACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCACCTGACAGG---T-------
716 TGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* * * *
19968311 T-CTCCGACGATGGTACCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCTAGCATGT
781 TGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * *
19968375 GCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
846 GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * **
19968429 CTTAGAATGGGAATGAACTTCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * * * * *
19968494 CGGCCAGA-----GGGATGCACAAGTCGGGGATTAGCCGAGTCTCCTTCTGCGTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * *
19968554 TACTGCCGCAACCCTCAGTTCAGTTC-GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTC-GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * *
19968618 AATGACGAAACGAGCGTGCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
195 ACCGATGAAACGAGC--G-G-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * **
19968683 AGCCGTAGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
** * *
19968748 ATTTTTATGGCTTGTAAATTTGTACAATGGTCCCTTAATCCTTCAAGTGAAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** *
19968813 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * * *
19968878 TCGAAAGGAGTTTTGGCCCCAAACATGGTAGACGCGATCCTTGTATTTTTGTTGGCATCCACAAA
451 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* * *
19968943 ACAATTCAGCTAAAAACTCGAAGTGTACGAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
19969008 CAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
19969073 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * ** ** * *
19969138 TCATGTGCGCACAACCCCCC-GACCCACCGATTATTAGAACCCTAATGCCGTCGATCAGG---T-
711 TCATGTGCGCAC-ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * *
19969198 ------T-CTCCGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCT
775 CGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
*
19969256 GCATGTGCTGCCGTAACCCTCGGTCC-G---G----T---C------TG-A-T-C--A--
840 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
19969292 --TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGGGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
19969355 CGGCCAGAGGGGCAGGATGCG-ATAGCCGGAGATCGGTCGGGTCCCCCTCT-CTGTGCTACCGAT
66 CGGCCAGAGGGGCGGGATGCGCA-AGCCGGGGATCGGTCGGGTCCCCCTCTAC-GTGCTGCCGAT
* ** * **
19969418 CTTGCTGTTGCAACCATCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
19969483 AACCGATGAAATGATCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAAACGAGATGCGCAAGC
194 AACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* **
19969548 CGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
259 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
* *
19969613 TGTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGA
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
19969678 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAAATTCTTTTG
389 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTG
* * *
19969743 GAAGGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAA
454 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
* *
19969808 ATTCAGCTAAAAATTC-AGAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCA
519 ATTCAGCTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
19969872 GACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGTGTGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
19969937 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * *
19970002 ATGTGGGCACACCCCCCTGGCCCCCCCGAT-ATCGGAACCCTAATGCTGTCGATCAGGTTC-AC-
713 ATGTGCGCACACCCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * *
19970064 -CG--G-T-----GATGGTGCCCCGGCAAAGAAAAATACGGCACGAGCACATGCCTGAGCCCAGT
777 ACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* * * *** ** * *
19970120 ATCTGTTGCCGTAACCCTCGGTCTAATTTGATCTTAGTCTGGGAATGAACTCCGCATG
842 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
19970178 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAATCCATGGAACGAGCGT------G-TCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * *
19970236 CGGCCAGAGGGACGAGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTATGTGCTGTCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * *
19970301 TGTTACCGCAACCCTCGGTCCT-GTCTGATCTTACATTGAGAATGAACTTCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
19970365 ACCGACGAAACAAGTCGGCGGGCGTGCGGGCGGGCACTACGCTGGCCAGAGAGACGAGATGCGCA
195 ACCGATGAAAC--G--AGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
19970430 AGCCGTGGATCGATAGGGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCT
256 AG-C------C------GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
**
19970495 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
308 GTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
19970532 NNNNNNNNNN
Statistics
Matches: 23293, Mismatches: 3756, Indels: 2461
0.79 0.13 0.08
Matches are distributed among these distances:
850 38 0.00
851 45 0.00
852 364 0.02
853 125 0.01
854 555 0.02
855 5 0.00
856 88 0.00
857 1 0.00
858 1 0.00
859 1 0.00
860 181 0.01
861 160 0.01
862 562 0.02
863 76 0.00
864 500 0.02
865 170 0.01
866 104 0.00
867 45 0.00
868 113 0.00
869 86 0.00
870 7 0.00
871 1 0.00
872 185 0.01
873 6 0.00
874 149 0.01
875 143 0.01
876 455 0.02
877 12 0.00
878 8 0.00
879 6 0.00
880 8 0.00
881 121 0.01
882 108 0.00
883 58 0.00
884 8 0.00
885 48 0.00
886 289 0.01
887 740 0.03
888 259 0.01
889 153 0.01
890 283 0.01
891 330 0.01
892 470 0.02
893 132 0.01
894 207 0.01
895 1006 0.04
896 168 0.01
897 859 0.04
898 1418 0.06
899 1257 0.05
900 1625 0.07
901 813 0.03
902 1457 0.06
903 2334 0.10
904 671 0.03
905 272 0.01
906 32 0.00
907 85 0.00
908 264 0.01
909 83 0.00
910 930 0.04
911 513 0.02
912 212 0.01
913 30 0.00
914 13 0.00
915 24 0.00
916 45 0.00
917 16 0.00
918 14 0.00
919 18 0.00
920 16 0.00
921 13 0.00
922 4 0.00
923 2 0.00
925 39 0.00
926 12 0.00
927 9 0.00
928 2 0.00
929 11 0.00
930 29 0.00
931 16 0.00
932 4 0.00
933 5 0.00
934 10 0.00
935 7 0.00
936 5 0.00
937 5 0.00
938 10 0.00
939 37 0.00
940 28 0.00
941 14 0.00
942 5 0.00
943 15 0.00
944 34 0.00
945 29 0.00
946 21 0.00
947 35 0.00
948 26 0.00
949 23 0.00
950 23 0.00
951 18 0.00
952 48 0.00
953 47 0.00
954 27 0.00
955 18 0.00
956 10 0.00
957 17 0.00
958 18 0.00
959 27 0.00
960 11 0.00
961 9 0.00
962 9 0.00
963 11 0.00
964 15 0.00
965 9 0.00
966 12 0.00
967 22 0.00
968 17 0.00
969 25 0.00
970 25 0.00
971 16 0.00
972 16 0.00
973 33 0.00
974 14 0.00
975 35 0.00
976 19 0.00
977 28 0.00
978 7 0.00
979 5 0.00
980 16 0.00
981 10 0.00
982 30 0.00
983 9 0.00
984 27 0.00
985 27 0.00
986 42 0.00
987 22 0.00
988 6 0.00
989 9 0.00
990 7 0.00
991 4 0.00
992 7 0.00
993 11 0.00
994 6 0.00
995 2 0.00
996 9 0.00
997 7 0.00
998 9 0.00
999 3 0.00
1000 6 0.00
1001 8 0.00
1002 6 0.00
1003 23 0.00
1004 8 0.00
1005 3 0.00
1006 6 0.00
1007 9 0.00
1008 4 0.00
1009 15 0.00
1010 9 0.00
1011 10 0.00
1012 11 0.00
1013 17 0.00
1014 15 0.00
1015 3 0.00
1016 5 0.00
1017 16 0.00
1018 3 0.00
1019 7 0.00
1020 6 0.00
1021 2 0.00
1022 2 0.00
1023 8 0.00
1024 405 0.02
1025 468 0.02
1026 445 0.02
1027 442 0.02
1028 444 0.02
1029 401 0.02
1030 501 0.02
1031 281 0.01
1032 351 0.02
1033 336 0.01
1034 325 0.01
1035 221 0.01
1036 376 0.02
1037 281 0.01
1038 378 0.02
1039 224 0.01
1040 256 0.01
1041 296 0.01
1042 258 0.01
1043 207 0.01
1044 249 0.01
1045 172 0.01
1046 214 0.01
1047 384 0.02
1048 390 0.02
1049 137 0.01
1050 105 0.00
1051 160 0.01
1052 158 0.01
1053 284 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
TGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:19944024 original size:26 final size:26
Alignment explanation
Indices: 19943995--19944047 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19943985 CCAGTCCGAT
19943995 CTTAGACTGGGAAGGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
*
19944021 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
19944047 C
1 C
19944048 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:19947513 original size:26 final size:26
Alignment explanation
Indices: 19947462--19947514 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19947452 CTAATCCGAT
**
19947462 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19947488 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
19947514 C
1 C
19947515 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19948404 original size:26 final size:26
Alignment explanation
Indices: 19948366--19948418 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19948356 TCGGTCTAAT
19948366 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
19948392 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
19948418 C
1 C
19948419 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:19949312 original size:26 final size:26
Alignment explanation
Indices: 19949276--19949328 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19949266 CCAGTCTGAT
19949276 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
19949302 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
19949328 C
1 C
19949329 CTAAGTCATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:19950204 original size:26 final size:26
Alignment explanation
Indices: 19950168--19950220 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19950158 CTGGTCTGAT
19950168 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19950194 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19950220 C
1 C
19950221 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19951991 original size:26 final size:26
Alignment explanation
Indices: 19951962--19952014 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19951952 CCGGTTCGAT
19951962 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19951988 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19952014 C
1 C
19952015 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19953804 original size:26 final size:26
Alignment explanation
Indices: 19953764--19953816 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19953754 CTGGTCTGAT
19953764 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
* *
19953790 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
19953816 C
1 C
19953817 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:19957416 original size:26 final size:25
Alignment explanation
Indices: 19957377--19957428 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
19957367 CCAGTCCGAT
* *
19957377 CTTAACTGGGAATGAACTCTGTATG
1 CTTAACTGGAAATGAACTCCGTATG
19957402 CTTAGACTGGAAATGAACTCCGTATG
1 CTTA-ACTGGAAATGAACTCCGTATG
19957428 C
1 C
19957429 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAACTGGAAATGAACTCCGTATG
Found at i:19958538 original size:158 final size:157
Alignment explanation
Indices: 19958250--19958638 Score: 474
Period size: 158 Copynumber: 2.5 Consensus size: 157
19958240 TGTGCTGCCG
* * * * *
19958250 CAACCCTCAGTCCGATCCGATCTTAGTCTGGGAACGAACTCCGTATGCCTAAGTCAACCAACAAA
1 CAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * **
19958315 ACGAGCGTGCGAGCGCTCAATCGGCCAGAGAGGCGGGATGCGTAAGCCGAGGATCGGCCGATCCC
66 ACGAGCGGGCGAGCGCACAACCAGCCAAAGAGGCGGGATGCG-AAGCCGAGGATCAACCGATCCC
*
19958380 CTTCTGCGTGCTGCCGATCCTGCTACCA
130 CATCTGCGTGCTGCCGATCCTGCTACCA
*
19958408 CAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * * *
19958473 ACGAGCGGGCGGGTGGACAGCCAGCCAAAGGGGCGGGATTGC-AAGCCGGGGATCAACCGGGTCC
66 ACGAGCGGGCGAGCGCACAACCAGCCAAAGAGGCGGGA-TGCGAAGCCGAGGATCAACC-GATCC
* ** *
19958537 CCATCTGCGTGCTGTCGATCCTGCTGTCG
129 CCATCTGCGTGCTGCCGATCCTGCTACCA
* * * * *
19958566 CAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
19958631 ACGAGCGG
66 ACGAGCGG
19958639 CCGGACGGGC
Statistics
Matches: 198, Mismatches: 31, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
157 13 0.07
158 182 0.92
159 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
CAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGAGCGCACAACCAGCCAAAGAGGCGGGATGCGAAGCCGAGGATCAACCGATCCCC
ATCTGCGTGCTGCCGATCCTGCTACCA
Found at i:19960171 original size:26 final size:26
Alignment explanation
Indices: 19960142--19960194 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19960132 CTGATCCGAT
*
19960142 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19960168 CTTAGACTAGGAATGGACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19960194 C
1 C
19960195 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19962298 original size:184 final size:184
Alignment explanation
Indices: 19961951--19962298 Score: 491
Period size: 184 Copynumber: 1.9 Consensus size: 184
19961941 ATATTAGACA
* * *
19961951 GGGAATGAACTCCGTATGCTTAGACTAGGAATAAACTCTATATGCCTAAGTCAACCCACGGAACG
1 GGGAATGAACTCCGTATGCTTAGACTAGGAAGAAACTCCATATGCCTAAGTCAACCCACGAAACG
* * * * *
19962016 AGCGTGCGGGCGCTCAACCGACCAGACGGGCGGGATGCGCAGGCCGGGGATCGACCGGGTCCTCT
66 AGCGTGCGGGCGCTCAACCGACCAGACGGGCGGGATGCGCAAGCCAGGAATCGACCGGGTCCCCC
* * *
19962081 TTTGCGTGCTACCGATCCTACTGCCGTAACCCTCGATCCATCTGATCTTAGTCT
131 TCTGCGTGCTACCGATCCTACTGCAGGAACCCTCGATCCATCTGATCTTAGTCT
* * *
19962135 GGGAATGAACTCCGTATGCTTATACTAGGAAGGAACTCCATATGTCTAAGTCAACCCACGAAACG
1 GGGAATGAACTCCGTATGCTTAGACTAGGAAGAAACTCCATATGCCTAAGTCAACCCACGAAACG
* * * * *
19962200 AGTGTGCGGGCGCTCAACCGACCAG-CGGGTCGGGATGCGGAAGTCAGTAATCGACTGGGTCCCC
66 AGCGTGCGGGCGCTCAACCGACCAGACGGG-CGGGATGCGCAAGCCAGGAATCGACCGGGTCCCC
* *
19962264 CTCTGCGTGCTACCGATCTTGCTGCAGGAACCCTC
130 CTCTGCGTGCTACCGATCCTACTGCAGGAACCCTC
19962299 AGTCTGGTCC
Statistics
Matches: 142, Mismatches: 21, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
183 4 0.03
184 138 0.97
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (184 bp):
GGGAATGAACTCCGTATGCTTAGACTAGGAAGAAACTCCATATGCCTAAGTCAACCCACGAAACG
AGCGTGCGGGCGCTCAACCGACCAGACGGGCGGGATGCGCAAGCCAGGAATCGACCGGGTCCCCC
TCTGCGTGCTACCGATCCTACTGCAGGAACCCTCGATCCATCTGATCTTAGTCT
Found at i:19963055 original size:26 final size:26
Alignment explanation
Indices: 19963026--19963078 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19963016 CCGGTCTGAT
* * *
19963026 CTTAGACTGGGAATGAGCTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
19963052 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
19963078 C
1 C
19963079 CTATGTAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:19963949 original size:26 final size:26
Alignment explanation
Indices: 19963913--19963964 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19963903 TCGATCCGAT
* *
19963913 TTAGATTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
19963939 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
19963965 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:19964853 original size:25 final size:26
Alignment explanation
Indices: 19964805--19964862 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
19964795 CTCGCTCTAG
*
19964805 TCCG-ATG-TTAGACTAGGAATGAAC
1 TCCGTATGCTTAGACTAGGAAAGAAC
*
19964829 TTCGTATGCTTAGACT-GGAAAGAAC
1 TCCGTATGCTTAGACTAGGAAAGAAC
19964854 TCCGTATGC
1 TCCGTATGC
19964863 CTAAGTCAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
24 3 0.10
25 19 0.66
26 7 0.24
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
TCCGTATGCTTAGACTAGGAAAGAAC
Found at i:19965735 original size:26 final size:26
Alignment explanation
Indices: 19965706--19965758 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19965696 CTGGTCCGAT
* *
19965706 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCATATG
19965732 CTTAGACTGGGAACGAACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
19965758 C
1 C
19965759 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:19967545 original size:26 final size:26
Alignment explanation
Indices: 19967516--19967568 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19967506 CCGATCCGAT
19967516 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19967542 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19967568 C
1 C
19967569 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19968268 original size:899 final size:897
Alignment explanation
Indices: 19938451--19958485 Score: 23036
Period size: 903 Copynumber: 22.5 Consensus size: 897
19938441 AAGGTTCTTA
* * *
19938451 AGGTTTGATGAGGGATATGAGGCCAATATAAGGGCCAAGTTCCAGCACCCATCGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * * *
19938516 CGCACGCCCCGCCGACCCCCCCGATCGTCGAAACCCCAATGCCGCCAGTTAGGTTCTCCGATGAT
66 CGCACACCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGTGAT
* *
19938581 GCTCCGACGATGTTGCCCCGACGAAGAAAAATGCGTCACCAGCACATGCCCGAGCCCAGCATGTG
130 GCTCCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * *
19938646 CTGTCGTAACCCTCGGTCC-AGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTATACTGGG
194 CTGCCGTAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * **
19938710 AATGAATTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTTGGCCAGAGGG
258 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * * * * * ** *
19938775 GCGGGATGCGCAAGCCGAGGATCGATCAGATCCCCCTCTACGTGCAAACGATCTTGCTGTTGTAA
323 GCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAA
* * * * *
19938840 CCTTC-AGTCTGGT-TCAATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAACCGACAAAA
388 CCCTCGA-TCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
19938903 CGACCAGGCGGGCGGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAA-CCGTGAAT
451 CG---A-GCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * * *
19938967 CGATAGGCTGGTAAGTGGGTTTAGGTACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGG
512 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
* * * * * **
19939032 CTTGTACATTCAATGCAAATGGTCCGTCAAGCCCTATCAACGTG-AGTTTACATGGGCAAGAATA
577 CTTGTAAATTC-ATAC-AATGGTCCCTTAAG-CCT-TC-ACGTGAAGTTT-CAT-GGCAGGACGA
* *
19939096 CTCATTTT-TATTTTTCACGATTTTCAAAAACTTTTTACGGTTTCGGTGATTTTTTAAAATTTTT
635 CTCGTTTTCTATTTTTCACGATTTTC-GAAACTTTTTACGG-TTCGG-GATTTTTTAAAATTTTT
*
19939160 TCCGGAAGGAGCTTTGGCCCCAAACTTGGTAGAGAACGTGATCCTTGTATTTTTGTTGGCATGCA
697 T-CGGAAGGAGTTTTGGCCCCAAACTTGGT--AG-ACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
19939225 CAAAAAAATTCAGCT-AAAACTCGAAGTGT-CAAGATTTTGTGACCATTTCAAAAAAAGTGT-CC
758 -AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTT-GAAAAAAGTGTCCC
*
19939287 CATTTCAGACA-TTTAAT-GCTAACTGGCAGCAAACC-ATAAAATCTCAAATGCTCTTTTAAGGG
821 CATTTCAGACACTTTAATGGCT-ACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGG
*
19939349 GGTGTGAAGTTCCCG
884 GGTGTG-AGTTCTCG
* * **
19939364 AGGTTTGATGA-GGATAAGGGGCCATATATAAGGGCCAAGT---AG-ACACATCAAATACATCAA
1 AGGTTTGATGAGGGATAGGGGGCCA-ATATAAGGGCCAAGTACCAGCACCCATC--GCACATC-A
** * *
19939424 TGTGCGCACAATACCCC-GCCTCCCCCGGAAT--TCGCGAAACCCAATG-CG-C-GTTAGGTTCT
62 TGTGCGCAC-ACCCCCCGGCC-CCCCC-G-ATCGTCG-GAACCCCAATGCCGACGGTCAGGTTCT
* * * ** * *
19939483 -CTGCGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGCGGCTGCACCACATGCCTGAGCCC
122 CCGGTGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *
19939547 AGCATGTGCTGTCGTAACCCTGGGTCC-AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
186 AGCATGTGCTGCCGTAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* ** *
19939611 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTATGGGCGCTCAGTCGG
250 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * * **
19939676 CCAGAGGGGCGGGATGTGCAAGTCGGGGATTGGCCGGGTCCCCCACTACGTGCTGTCGATCCTGC
315 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGC
* ** **
19939741 TACTACAACCCTC-AGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATT
380 TGCCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* ** *
19939805 GACGAAACGAGTGGGCGAGTGGGCGGGCGGGCACTACACCGGCCAGAGAGATGGGATGCGCAAGC
444 GACGAAACGAGCGGGC----GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * *
19939870 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAGTGTCATT
505 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* * **
19939935 TTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAATACGA
570 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGA
* * *
19940000 CTCGTTTTCTATTTTTCACGATTTTTGAATCTTTTTA-GCGTTCAGGATTTTTTAAAATTTTTTC
635 CTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACG-GTTCGGGATTTTTTAAAATTTTTTC
* * *
19940064 GGAAGGTGTTTT-GCCCCAAATTTGGTAGACCTGATCCTTGTATTTTTGTTGGCATGCATAAAAA
699 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAA
* ** * *
19940128 AATTCAGCTAAAAACCCAAAGTGTACAAGATTTTGTGACTGTTTGAGAAAAGTGTCCCCATTTTA
763 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
19940193 GACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGT
828 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
19940258 TCTCC
893 TCTCG
* * * *
19940263 AGGTTTGATGAGGGATAGGGGGCCGATATAAGGGCCAAGTACTAGCACACATCGCACATCACGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * ** **
19940328 CGCACACCCCCCCAGCCCCCTCGATCATTGGAACCCCAATGCCGGTGGTCAGGTTCTCCGACGAT
66 CGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGTGAT
* *
19940393 GCTCCGGTGATGGTGCCCCGACGAAGAAAAATAG-GGCACCAGCACATGCTCGAGCCCAGCATGT
130 GCTCC-GCGATGGTGCCCCGACGAAGAAAAAT-GCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * *
19940457 GCTACCGCAA-CC-C--T-CG----G-TC----A-T--G--T----T-CG-AT-CTTAGACTGAG
193 GCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * *
19940496 AATAAACTTCGTATGCCTAAGTCAGCCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA-GG
258 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * * *** * ***
19940560 GCGGGATGCCCAAGTCGGGGATCGGCCGGGTCCCCCT-TTCTGTGTTGTTGATCTTGCTATTGCA
323 GCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGC-GTGCTACCGATCCTGCTGCCGCA
* ** * * * * *
19940624 ACCCTCGGTCCGGTCCAATCTTAGATTGGGGATGAATTTCGTATGCCTAAGCCAACCGACGAAAT
387 ACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * * *
19940689 GAGTGGGCGGGTAGGCAAGCAGGCACTACG-CATGCCAGAGAGACGAGATGCGCAAGCCATGGAT
452 GAGCGGGCGGG-CGG---GCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
19940753 TGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
512 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
* ** *
19940818 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAATACGACTCATTT
577 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTT
* * * * * *
19940883 TCTATATTTCACGAATTTCGAAACATTTTT-CGATTCGGGATTTTTTGAAATTTTTTTGAAAGGA
642 TCTATTTTTCACGATTTTCGAAAC-TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
*
19940947 GTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAG
706 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAG
* * * * * *
19941011 CCAAAAACTCGAAGTGTACAAGATTTTGTCATCATTTGAAAAAAGTGTCCCCATATCAGACAATT
770 CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * * * *
19941076 TAATGGCTACTGGCAGCAAACCTGTAAACTATGAAATGATTTTTTAAGGGGGAGTGAGTTCTCG
835 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG-CTCTTTAAGGGGGTGTGAGTTCTCG
** * * *
19941140 ACATTTGATGAGGCATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
19941205 CGCACGCCCCCCAG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
66 CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGTGATG
* * * * *
19941269 CTCCGGTGATGGTGCCCTGAGGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGC
131 CTCC-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
*
19941334 TG-C-TACAACC-C--T-CG----G----T---C------TG-A-TCCG-AT-CTTAGACTGGGA
195 TGCCGTA-ACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* *
19941372 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGGGG
259 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
** * * * * * *
19941437 CGGGATGCGCAAGCCGGGGATCGACCAGGTCCCCTTCTGCATGCTGCCAATCCTGCTACCGCAAC
324 CGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAAC
* * ** *
19941502 CCTC-AGTCCAGT-TCAATCTTAGACTACGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC
389 CCTCGA-TCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * *
19941565 GAGCTGGCGGATGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATG-GTTAAGCCGTGGAT
452 GAGC--G-GG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG-CAAGCCGTGGAT
* *
19941629 C---------G-A--T--GTTTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
512 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
*
19941680 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
577 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTT
* * * ** * *
19941745 TCTCTTTTTCATGATTTTCGAAACTTTTT-TGGTTCGGGATTTTTTTTAATTTTTTTGAAAGGAG
642 TCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
*
19941809 TTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGC
707 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGC
* * * * * *
19941873 TAAAAACTCGAAGTGTAGAAGATTTTGTGACTATTCGAAAAAAGTGTTCCCAATTCAGACACTTT
771 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
19941938 AATGGCTACTGGCTGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
836 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
19942000 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
19942065 CGCACACCCCCCAGG-CCCCCCGATTGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGATGAT
66 CGCACACCCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGTGAT
* * * * **
19942129 GCTGCGGCGATGGTGGCCCGACGAAGAAAAATGCTGCACCAGCACATCCCCGAGCATAGCATGTG
130 GCT-CCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * *
19942194 CTGCCGCAACCCTCGGTCC-AGTCCGATCTTAGATTGGGAAGGAACTCCGTATGCTTAGACTGGG
194 CTGCCGTAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * *
19942258 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGG
258 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * * ** * *
19942323 GTGGGTTGCGCAAGCCAGGGATCAGCCGGGTCCCCCTCTATGTGCTGCCAATCCTGCTGCCGCAA
323 GCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAA
* * * * * *
19942388 CCCTCGGTCTGGTCTGACCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACG
388 CCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * *
19942453 AGCGGGCGGGCGGGCGGGCACTACGTTGGCTAGAGAGACGGGATGCACAAGCCGTGGATTGATAG
453 AGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
** *
19942518 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGTCAATGCCATTTTTATGGCTTGTA
518 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
* * * * ** * *
19942583 AATTCATGCAATTGTCCTTTAAGCCTTCACGTGACGTTTTTTGGCAAGACGACTCATTTTCTATT
583 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATT
* * ** * *
19942648 TTTCATGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGG
648 TTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * * *
19942713 CCCCAAACTTGGTAGATGTGTTCCTTGTATTTTT-TTGGGCATGCCAAAAAAATTCACCTAAAAA
713 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCAAAAAAAATTCAGCTAAAAA
* *
19942777 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGC
777 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* *
19942842 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCC
842 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
19942898 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCACGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * **
19942963 CGCACACCCCCCAGCCCCCCCGATCATTGGAACCCCAATGCCGGCGGTCAGGTTCTCCGACGATG
66 CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGTGATG
** * * *
19943028 CTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCAACAGCACATGCTCGAGCCCAGCATGTGC
131 CTCCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
19943093 TACCGCAA-CC-C--T-CG----G-TC----A-T--G--T----T-CG-AT-CTTAGACTGAGAA
195 TGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * *
19943132 TGAACTCCGTATGCCTAAGTCAGCCCACGAAACAAGCGTGTGGGCGCTCAGCCGACCAGAGGGGC
260 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * *** ***
19943197 GGGATGCCCAAGTCGAGGATCGGTCGGGTCCCCCTTTGTGTGCTGTTGATCCTGCTATTGCAACC
325 GGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACC
* * * * * *
19943262 CTCGGTCCGGTCCGATCTTAGATTGAGG-ATGAACTTCGTATGCCAAAGCCAACCGACGAAATGA
390 CTCGATCCGGTCTGATCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * *
19943326 GTGGGCGGGCAGGCAGGCAGGCACTACG-CATGCCAGAGAGACAGGATGCGCAAGCCGTGGATTG
454 GCGGGCGGGC--G--GGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *
19943390 ATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
514 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
*
19943455 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
579 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTC
* * ** * *
19943520 TCTTTTTCACGATTTTTGAAACTTTTT-CGGTTCGGGATTTTTTTTAATTTTTTTGAAAGGAG-T
644 TATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * *
19943583 TTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAATTCAGCTAA
709 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAA
* * * * *
19943648 AAACTCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAATTGTTCCCAATTCAGACACTTTAAT
774 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
19943713 GGCTACTGGCTGCAAACTTGTAAAATTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
839 GGCTACTGGCAGCAAACCTGTAAAA-TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
19943773 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * **
19943838 CGCACACCCCCCAGGCCCCCTCGATTGCCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGAT
66 CGCACACCCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGTGAT
* * **
19943903 GCTGCGGCGATGGTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCATAGCATGTG
130 GCT-CCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* *
19943968 CTGCCGCAACCCTCGGTCC-AGTCCGATCTTAGACTGGGAAGGAACTCCGTATGCTTAGACTGGG
194 CTGCCGTAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * *
19944032 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGG
258 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* ** * * * *
19944097 GCGGGTTGCGCAAGCCAAGGATCAGTCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTGCCGCAA
323 GCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAA
* * * * **
19944162 CCCTCGGTCTGGTCTGACCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGATTAAACG
388 CCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * *
19944227 AGCGGACGGGCGGGCGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAG
453 AGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
*
19944292 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTA
518 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
* * * * * *
19944357 AATTCATGCAATTGTCCTTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCATTTTCTATT
583 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATT
* ** ** * *
19944422 TTTCATGATTTTTAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGG
648 TTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * *
19944487 CCCCAAACTTGGTAGACGTGTTCCTTGTATTTTT-TTGGGCATGCCAAAAAAATTCACCTAAAAA
713 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCAAAAAAAATTCAGCTAAAAA
* * *
19944551 CTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGC
777 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * * * *
19944616 TACTAGCAGCAAACCTGTAAAATCTCAGATGCTCTTTAAGGAGGTGTGAGTCCTCA
842 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
19944672 AGGTTTGATGAGGGATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *
19944737 CGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCTAATGCCGTCGGTTAGGTTCTCC---GAT
66 CGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGTGAT
* * * * * * * **
19944798 GAT--G-G-T-GT-CCCGGTA--AAGAAAACTACGGTACCAGCTCTTGCCTAAGCCCAGCATGTG
130 GCTCCGCGATGGTGCCCCG-ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* *
19944855 CTGCC-CAACCCT---T--G----G---TT---C---G-AT---CT--G-AT-CTTAGACTGGAA
194 CTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
** * *
19944893 ATGAACTCCGTATAACTAAGTCAAGCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGG
259 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
** * * * ** *
19944958 TAGGATGCACAAGCCGGGGATTGGTCGGGTCCCCATCTGCGTGCTTTCGATCCTGCTACCGCAAC
324 CGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAAC
* ** * *
19945023 CCTC-AGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACG
389 CCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * *
19945087 A----GC---C-GGTGGGCACTACGCCGGCCAGAGAGATGGGATGCCCAAGCCGTGGATCGATAG
453 AGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
19945144 TGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCAATTTTTATGGCTTGTA
518 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
* * * * *
19945209 AATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACAACTTGTTTTCCATT
583 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATT
* * * * * * *
19945274 TTTCACGATTTTCCAAACTTTTTGCGATTCAGGATTTTTTGAAATTTTTTTGAAAGGAGTTTT-G
648 TTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* *
19945338 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCATAAAAAAATTCAGCCAAAAA
713 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAA
* * * * * * *
19945403 CTCGAAGTGTACAATATTTTGTCATCATTTGAAAAAAGTGTCCCTATATCAGACAATTTAATGGC
777 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * * * *
19945468 TACTGGCAGCAAACCTGTAAAATATGAAATGATTTTTTAAGGGGGAGTGAGTTCTCG
842 TACTGGCAGCAAACCTGTAAAATCTCAAATG-CTCTTTAAGGGGGTGTGAGTTCTCG
** ** * *
19945525 ACATTTGATGAGCCATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * **
19945590 CGCACGCCCCCCAG-CCCCCCGATCGCCGGAACCCCAATGCCGTA-GGTCAGGTTCTCCGACGAT
66 CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG-ACGGTCAGGTTCTCCGGTGAT
* * *
19945653 GCTCCGACGATGGTGCCCC-AGGGAAGAAAAATGCGCCACCAGCACATGCTCGAGCCCAGCATGT
130 GCTCCG-CGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* *
19945717 GCTGTCGCAA-CC-C--T-CG----G-TC-----C---G---G---TCCG-AT-CTTAGACTGGG
193 GCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * *
19945756 AGTGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCCGGCGCTCAGCCAGCCAGAGGG
258 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * ** *
19945821 GCGTGATGCGCAAGTCGGGGATCGGCCGAGTCCCCCTCTATGTGCTACCGATCCTGCTGCTGCAA
323 GCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAA
* * *
19945886 CCCTC-AGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAC
388 CCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * *
19945950 GA--------GCGAGCGGGCACTACGCCGACCAGAGAGACGAGATGCGTAAGCCGTGGATCGATA
452 GAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * *** *
19946007 GGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGTGTAAGAATGCCATTTTCATGGCTTGT
517 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
* * * *
19946072 AAATTCATACAATGCTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACAACTCGTTTTCTAT
582 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTAT
* * * *
19946137 TTTTCATGATTTTTGAAACTTTTTACGGTTCAGGACTTTTTAAAATTTTTTCGGAAGGCA-TTTT
647 TTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG-AGTTTT
*
19946201 GGCCCCAAACTTGGTAGACGTGATACTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
711 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAA
*
19946266 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
775 AACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
19946331 GCTCCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCG
840 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
19946389 AGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
19946454 CGTACACCCCCACCAGCCCCCCCGATCGTCGGAACCCCAATGTC-ATCGGTTAGGTTCTCC---G
66 CGCACA-CCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGA-CGGTCAGGTTCTCCGGTG
** ** * * * * * * *
19946515 A---T----GATGGTGTACCGATAAAGAAAAATACAGTACCAGCTCTTGCCTGAGCCTAGCATGT
128 ATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
*
19946573 GCTGCCGCAACCCTCGGTCC-A---G-TC-----C---G-AT---CT---TA-G---AG--TGGG
193 GCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * *
19946612 AATGAACTCCATATGACTAAGTCAACCAACGAAAC-A-AGTGCGGGCGCTCAGCCGGCCAGAGGG
258 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * * * * * * *
19946675 GCAGGATACGTAAGTCGAGGATCGATCGGGTCCCCCTCT-CTGTGCTGCCAATCCTGCTACCGTA
323 GCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGC-GTGCTACCGATCCTGCTGCCGCA
* *
19946739 ACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
387 ACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
*
19946804 GA--------GCTGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
452 GAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * * *
19946861 GTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCAATTTTTATGGCTTGT
517 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
* * * * * *
19946926 AAATTCATACAATTGTCCCCTAAGTCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCCAT
582 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTAT
* * * * * *
19946991 TTTTCATGATTTTCAAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTG
647 TTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * *
19947056 GCCCCAAACTTTGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
712 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAA
* * *
19947121 ACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGG
776 ACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * * *
19947186 CTACTAGTAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTCTCG
841 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
**
19947243 AGGTTTGATGAGGGATAACGGGCCAATATAA-GGCCAAGTACCAGCACCCATCGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * *
19947307 CGCACA-CCCCCGGCCCCCCCGATCATCGGAATCCCAATGCCGCCAGTCAGGTTCTTCGATGATG
66 CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGTGATG
* * * * *
19947371 CTCCGATGATGGTGCCCC-AGGGAAGAAAAATGCGCCACCAGCACATGCTCGAGCCTAGCATGTG
131 CTCCG-CGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * ** *
19947435 CTGTCGCAACCCTCGGTCTAATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGA
194 CTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * ** * *
19947500 ATGAACTCCATATGCCTAAGTTAACCCACGAAACGAGCGTATGGGCGCTCAGCCAGCCAGAAGGG
259 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * ** * * * *
19947565 CAGGATGCGCAAGCCGGGAATCGGCCGAGTCCCCCTCTATGTGCTGCCGATCTTACTGCCGCAAG
324 CGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAAC
* ** ** * * * * *
19947630 CCTTGGCCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATTCCTAAGCCAACCAACAAAACAA
389 CCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
*
19947695 GCGGGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGA
454 GC--G-GG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * *
19947760 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACTTGCGAATGCCATTTTCATGGCTT
515 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* *
19947825 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCT
580 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCT
* * ** *
19947890 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGATTTT
645 ATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
*
19947955 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
710 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAA
* *
19948020 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAT
774 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * **
19948085 GTCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTA
839 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
**
19948144 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCATACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * **
19948209 CGCACACCCCCCCGGCCCCCCCGATCGTTGGAACTCCAATGCC-ACTGGTCAGGTTCTCCGACGA
66 CGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGAC-GGTCAGGTTCTCCGGTGA
* * * * *
19948273 CGCTCCGATGATGGTGCCCCGACGAAGAAAAATACGGCACTAGCACAAGCCCGAGCCC-GACATG
129 TGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG-CATG
* ** * * ** * *
19948337 TGTTGCCACAACCCTCGGTTCGGTCTAATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGG
192 TGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * *
19948402 GAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTTCGGGCGCTCAGCCTGCCAG-GG
257 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * *
19948466 GGTGGGATGCGCAAGCAGGGGATCGGCCGGGTCCGCCTCTGCGTGCTGCCGATCCTGCTGCCACA
322 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCA
* * * * *
19948531 ACCCTTGGTCTGGTCTGATCTTAGACTCGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAAT
387 ACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-
* * * * *
19948596 GAGCAGGCGGGCGGGCGGGCGGGCGGTCGGGCACTACGCCAGCTAGAGAGACGAGATGCGCAAGC
449 -A--A--CGAGCGGGCGGGC--G-GG-CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * *
19948661 CGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATT
505 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* *
19948726 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGA
570 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGA
* * *
19948791 CTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
635 CTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * *
19948856 GAAGGAGTTTT-GCCCCAAAATGGGTAGACCTGATCCTTGTATTTTTGTTAGCATGCACAAAAAA
700 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAA
* * *
19948920 ATTGAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTG
764 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
19948985 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTT
829 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
19949050 CTCG
894 CTCG
19949054 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * **
19949118 CGCACAACCCCCCCGACCCCCCAGATCGTCGGAACCCCAATGTCGCCGGTCAAGTTCTCCAATGA
66 CGCAC-A-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGTGA
* * *
19949183 TGCTCCGACGATGGTGCCCCAATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
129 TGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * * *
19949248 CCTATCC-CAACCCTCAGTCC-AGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTG
193 GCT-GCCGTAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * * *
19949311 GGAATGAACTCCGTATGCCTAAGTCATCCCACAAAACGAGTGCGCGGGCGCTCAGCCAGCCAGAT
256 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
** *** * * * * ** *
19949376 GGGCGGGATGCATAAGTTAGGGATCGGTCGGGTCCCTCTCTACGTGTTGCCGATCCTAATGCCAC
321 GGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGC
* * * ** *
19949441 AACTCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAA
386 AACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
19949506 CGA--------GCGGGCGGGCATTACGTCGGCCAGAGACACGGGATGCGCAAGCCGTGGATCGAT
451 CGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * *
19949563 GGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTG
516 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
* *
19949628 TAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
581 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTA
** *
19949693 TTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTC-GAAGGAGTTT
646 TTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTT
* * * * *
19949757 TGGCCCCAAACTTGGTAGATGTGATCCTTGTTTTTTTTTTGGCATCCACAAAAAAATTCAGCTGA
710 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAA
* *
19949822 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAAT
774 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
19949887 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
839 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
19949946 AGATTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * * **
19950011 CGCACACCCCCCCGGCCCCTCCGATCATCGGAACCCCAATCCCGTCGGTTAGGTTCTTCGACGAT
66 CGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGTGAT
* * *
19950076 GCTCCGACGATGGTGCCCTGGA-GAAGAAAAATGCGGCACCAGCACCTGCCTGAGCCCAGCATGT
130 GCTCCG-CGATGGTGCCC-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * * *
19950140 GCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
193 GCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * *
19950205 AATGAACTCCGTATGCCAAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGG
258 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * * *
19950270 GTGGGATGCACAAG-CGAGGG-TCGGCCGGGTCCCCCTCTGTGTGCTACCGATCCTGCTACTGCA
323 GCGGGATGCGCAAGCCG-GGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCA
* * * *
19950333 ACCCTC-ATTCCGAT-TCAATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCCAACCGATGAA
387 ACCCTCGA-TCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
19950396 ACGAGCGGGCGGTCGGGCGAGCACTAC-TCCGGCCTA-AGAGGCGGGATGCGCAAGTCATGGATC
450 ACGAGCGGGCGGGCGGGCGGGCACTACGT-CGGCC-AGAGAGACGGGATGCGCAAGCCGTGGATC
* *
19950459 GATAGGGTGGTAGTTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGC
513 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
* * * * *
19950524 TTGTCAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGATGACTCGTTTT
578 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTT
* * * * * *
19950589 CTATTTTTCACGATTTTCGAAACTTTTTGCAGTTCAGAATTTTTTAAAATTTTTTCGCAAGGATT
643 CTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* * * * *
19950654 TTTGGTCCCAAACTTGGTATACGTGATGCTTATATTTTTGTTGGCATGCACAAAACAATTCAGCT
708 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCT
*
19950719 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTA
772 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
** *
19950784 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGTATGTGAGTTCTCA
837 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
19950844 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCACCGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * **
19950909 CGTACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
66 CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGTGATG
* * * *
19950974 CTCTGGCGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAACATGTGC
131 CTC-CGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * * * * *
19951039 TGTCGTAACCCTCGATCTGGTCTGATCTTACACTAGGAATGAACTCCGTATGCCTAGACTGGGAA
195 TGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
** * * *
19951104 TGAACTTTGTATGCCCAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGAGGC
260 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * * *
19951169 GGGATGCGTAAGCCGGGGATCGATTGGGTCCCCTTCTACGTGCTACCAATCCTGCTGCCGTAACC
325 GGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACC
* ** * *
19951234 CTCGATCCAGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAG
390 CTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * *
19951299 CGGGCGGGC--AC---CAC-AC--CGGCTAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGA
455 CGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* *
19951356 TGGTAGGTGGGTTTAGGCACATATTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAA
520 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
* *
19951421 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
585 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTT
* ***
19951486 TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGAAA
650 TCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * * * *
19951551 CCAAACTTGGTAGACATGAACCTTGTATTTTTGTTGGCATGCAGAAAACAATTTAGCTAGAAACT
715 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACT
* * *
19951616 GGAATTTGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTCAGACACTTTAATA
779 -CAA--AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATG
* * * * * *
19951681 GCTACTGGTAGCAAACCTGTAAAATCTCGACTGCTCTTTAAGGGTGTGTGGGTTCTCA
840 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
19951739 AGGTTTGATGAGGGATAGGGGGCCAATATAAGTGCCAAGTACCAGTAACCATCGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * * *
19951804 CGCACACACCCCTC-CCAACCCCCCGATCATCAGAATCCCAATGCTGTCGGTCAGGTTCTCCGGC
66 CGCACAC-CCCC-CGGC--CCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGT
* *
19951868 GATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATACGGCACCACCACATGCCCGA-CCCAGCAT
127 GATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
** * *
19951932 GTGCTGCCGTAACCCTCAATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
191 GTGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * *
19951997 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAA
256 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * ** * * * ** *
19952062 GGGTGGGATGCGCAAGCTGGGGATCGACCTGGTCCCTCTCTACGTGCTGTCGATCCTGCTGCCAC
321 GGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGC
* * * * *
19952127 AACCCTTGGTCCAGTCTGATCTTAGACTAGCAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
386 AACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* ** * *
19952192 CGAGCGGGCAAGCGGAAGGGCGGGCACTACACCGGCCAGAGAGACAGGATGCG-AAGCTGTGGAT
451 CGAGCGGGC--G-GG-CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
19952256 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTGCATGCCAATGCCATTTTTATGG
512 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
* *
19952321 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTT
577 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTT
* * * * * * *
19952386 TCTATTTTTCATGATTTTCAAAATTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTGGGAAGGCG
642 TCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* *
19952451 TTTTGGCCCCAAACTTGGTAGACGTGAT-CTTGTATTTTTGTAGGCATGCATAAAAGAATTCAGC
707 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGC
** * ** *
19952515 TAAAAACTTGAAGTGTACATGATTTTACGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
771 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
19952580 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTG
836 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
19952642 AGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
19952707 CGCATACCCCCTCGGCCTCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGAT
66 CGCACACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGTGAT
* * *
19952772 GCTCTGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACTTGCCCGAGCCCAGCATGTG
130 GCTC-CGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
** * * * * * * *
19952837 CTGTTGCAACCCTCAGTCCGGTCCGATATTAGACTGGGAATGAACTTCGTAAGCTTAGACTTGGA
194 CTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * ** * *
19952902 ATGAACTCCGTATGCCTATGTCAAACCACGAAATGAGCGTGCGGGCATTCAACCGACCAGAGGGG
259 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * ** * * * * * *
19952967 CTGGATGCGCAATCCGAGGATCGACCGGGCCCCCCTTTGTGTGCTGCCAATCCTGCTACCGCAAC
324 CGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAAC
* * * * * *
19953032 CCTC-AGTCTGATCCGACCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATG
389 CCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * *
19953096 AGTGGGCGGGTGGACGGGCACTAC-TCCGACCAGAGAGACGGGATGCGCAAGCCAG-GGATCGAT
453 AGCGGGCGGGCGGGCGGGCACTACGT-CGGCCAGAGAGACGGGATGCGCAAGCC-GTGGATCGAT
* *
19953159 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATATGTGCGTGCCAATGCCATTTTTATGGCTTG
516 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
* * *
19953224 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACAACTCGATTTT-T
581 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCG-TTTTCT
* * * * * *
19953288 ATTTTTCATGATTTTCAAAACTTTTTATGATTTGGGATTTTTTCAAATTTTTTCGGAAGGAGTTT
645 ATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * * * *
19953353 TGGCCCCAAACGTGGTAGACATGATCCTTGTATTCTTATTGGCATGCATAAAAAAATTCAGCTAG
710 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAA
* *
19953418 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAAT
774 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
19953483 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTGG
839 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
19953542 AGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *
19953607 CGCACACCCCCCCGGCCCCCCCGATCGTCGAAAACCCAATGCCGCCGGTCAGGTTCTCCGGTGAT
66 CGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGTGAT
* * * * * *
19953672 GCTCGGACGATGGTGCCCCGTCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCTGAATGTG
130 GCTCCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * ** * * * * *
19953737 CTGTCGTAAGCCTCAATCTGGTCTGATCTTAGACTGGAAATGAACTCCATATGCTTAGACTGGGA
194 CTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * ** *
19953802 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACAGGCGCTCAGCTAGCCAGATGGG
259 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* ** * * * ** * *
19953867 CAGGATGCGCAAGTTGGGGATCGGCCAGGTCCCCCTCTGCATGCTGTCGATCCTACTGCCACAAC
324 CGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAAC
* * * * *
19953932 CCTCGGTTCAGTCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAACTGACGAAACGA
389 CCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * * * *
19953997 GCGGGCGGGCGAGCGTGCAGGCT-CTATGCTGGCCAGAAAGACGGGATGCGTAAGTCGTGAATCG
454 GCGGGCGGGCGGGCGGGCA--CTAC-GT-C-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * * *
19954061 ATAGAGTGGTAGGTGGGCTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCATTTTTATGGCT
514 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
* * * *
19954126 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGTAAGACGACTCATTTTC
579 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTC
* ** * ** * * *
19954191 TATTTTTCATGATTTTTTAAACTTTTT-TGTGATTCAAGATTTTTTATAATTTTTTGGGAAGGAT
644 TATTTTTCACGATTTTCGAAACTTTTTACG-G-TTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * * * * *
19954255 TTTTGGCCCCAAACTTGGTAGACATGATCCTTATATTTTTTTTAGCATGCACAAAAAACTTCAAC
707 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGC
* ** * *
19954320 TAAAAATTGGAAGTGTACAAGATTTTGGGACCATTTGAAAAAGGTG-CCCCATTTCAGACACTTT
771 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * *
19954384 AATGGCTA-TGCCAGCAAACCCGTAAAATCTCTAATGCTCTTTACGGGGGTGTGAGTTCTCG
836 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
19954445 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTAGCCATCGTACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * *
19954510 TGCACACCCCCCGACCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATG
66 CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGTGATG
* * * * * *
19954575 CTCTAGCAATGGTGCCCC-AGCGAAGAAAAATACGGCACCAGCAAATGTCCGAGCCCAGTATGTG
131 CTC-CGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * * *
19954639 CTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTCGAAATGAACTCCGTATGCTTAGACTGGGA
194 CTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * *
19954704 ATGAACTCCATATACCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGG
259 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * ** * *
19954769 CGGGATGCACAAGCCGGGGATCGATCGGGTGCCCCTCTACGTGCTGTCAATCCTGCTGCTGCAAC
324 CGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAAC
* * * *
19954834 CCTCGATCTGATTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA
389 CCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * *
19954899 GCGGACGGGCGGACAGGCGGGCACTACG-CGGGCCAGAGAGATGGGAAGCGCAAGCCGTAGATTG
454 GCGGGCGGGC-G---GGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *
19954963 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCGTCCCAATGCCATTTTTATGGCT
514 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
* * * *
19955028 TGTAAATTCATACAACGATCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGAC-ACTCGTTTTC
579 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTC
* * * * **
19955092 TATTTTTCACGATTTTTGAAACGTTTTACCGTTCGGGATTTTTTAAAATTTTTTTGGAAGGCCTT
644 TATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* *
19955157 TTGGCCCCAAACTTGTTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
709 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTA
* ** *
19955222 AAAAATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAA
773 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
19955287 TAGCTACTGGCAGCAAACCTGTAAAATCTCTAATGCTCTTTAAAGGGGTGTGAGTTCTCG
838 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * *
19955347 AGGATTGTTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTAGCCATCGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * * **
19955412 TGCACACCCCCCCGACCCCCCCGATTGTCGAAACCCTAATGCCGCCGGTCAGGTTCTCCGACGAT
66 CGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGTGAT
* * * * *
19955477 GCTCTAGCGATGGTGCCCC-AGCGAAGAAAAATACGGCACCAGCAAATGTCCC-AGCCTAGTATG
130 GCTC-CGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATG-CCCGAGCCCAGCATG
** * * * * *
19955540 TGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTCGAAATGAACTCCGTATGCTTAGACTAG
192 TGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* *
19955605 GAATGAACTCCTTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
257 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * ** * *
19955670 GGCGGGATGCACAAGCCGGGGATCGATCGGGTGCCCCTCTACGTGCTGTCAATCCTGCTGCTGCA
322 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCA
* * * *
19955735 ACCCTCGATCTGATTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC
387 ACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* *
19955800 GAGCGGGCGGGCGGACAGGCGGGCACTACG-CGGGCCAGAGAGACGGGAAGCGCAAGCCGTAGAT
452 GAGCGGGCGGGC-G---GGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
19955864 TGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCGTCCCAATGCCATTTTTATGG
512 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
* * * *
19955929 CTTGTAAATTCATACAACGATCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGAC-ACTCGTTT
577 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTT
* * * * **
19955993 TCTATTTTTCACGATTTTTGAAACGTTTTACCGTTCGGGATTTTTTAAAATTTTTTTGGAAGGCC
642 TCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* *
19956058 TTTTGGCCCCAAACTTGTTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
707 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGC
* ** *
19956123 TAAAAAATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTT
771 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
19956188 AATAGCTACTGGCAGCAAACCTGTAAAATCTCTAATGCTCTTTAAAGGGGTGTGAGTTCTCG
836 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * *
19956250 AGGATTGTTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTAGCCATCGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * * **
19956315 TGCACACCCCCCCGACCCCCCCGATTGTCGAAACCCTAATGCCGCCGGTCAGGTTCTCCGACGAT
66 CGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGTGAT
* * * * *
19956380 GCTCTAGCGATGGTGCCCC-AGCGAAGAAAAATACGGCACCAGCAAATGTCCC-AGCCTAGTATG
130 GCTC-CGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATG-CCCGAGCCCAGCATG
** * * * * *
19956443 TGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTCGAAATGAACTCCGTATGCTTAGACTAG
192 TGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* *
19956508 GAATGAACTCCTTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
257 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * ** * *
19956573 GGCGGGATGCACAAGCCGGGGATCGATCGGGTGCCCCTCTACGTGCTGTCAATCCTGCTGCTGCA
322 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCA
* * * *
19956638 ACCCTCGATCTGATTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC
387 ACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* *
19956703 GAGCGGGCGGGCGGACAGGCGGGCACTACG-CGGGCCAGAGAGACGGGAAGCGCAAGCCGTAGAT
452 GAGCGGGCGGGC-G---GGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
19956767 TGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCGTCCCAATGCCATTTTTATGG
512 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
* * * *
19956832 CTTGTAAATTCATACAACGATCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGAC-ACTCGTTT
577 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTT
* * * * *
19956896 TCTATTTTTCACGATTTTTGAAACGTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGCG
642 TCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
*
19956961 TTTTGGCCCCAAACTTGTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
707 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGC
* ** *
19957026 TAAAAAATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTCTCCCCATTTCAGACACTTT
771 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
19957091 AATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
836 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
19957153 AGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA--TG
* * * * * **
19957218 TGCACACACCCCTCCTGACCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCA
64 TGCGCACACCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGTG
* ** * * * *
19957283 ATGCTCCAGCAATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACAGGCCCAAGCCTAGCATT
128 ATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
19957348 TGCTGCCGCAACCCTTGATCC-AGTCCGATCTTA-ACTGGGAATGAACTCTGTATGCTTAGACTG
192 TGCTGCCGTAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * * *
19957411 GAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAACGTGCGGGCGCTCAGTCAGCCAGAA
256 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * ** * *** * * *
19957476 AGGCGGGATGTGCAAGCTAAGGG-TCGGTCGGGTCCCCCTCTGCGCGCTGTTGATCCTGGTACTG
321 GGGCGGGATGCGCAAGC-CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCG
* * * *
19957540 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGACGAA
385 CAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
19957605 ACGA----GCGAGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGA
450 ACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * ** **
19957666 TAGGGTTGTAGAT-GGTTTAGGCACATCTTCATATTTCTGAATGCCAATGGTATTTTTATGGCTT
515 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* *
19957730 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCT
580 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCT
* * * *
19957795 ATTTTTCATGATTTTC-AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTT
645 ATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * *
19957859 TGGCCCCAAACTTGGTAGACCTGATCCTTGTGTTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
710 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAA
* * * * *
19957924 AAACTCGAAGTGTACAATATTATGTGTCCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAT
774 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * * *
19957989 GGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTTTTTAGGGGGGTGTCAGTTCTTG
839 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
19958048 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCCAGTACCAGCACCCATCGCACATCAAGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
19958113 CGCACACCCCCTCCGGCCCCCTCGGTCG-CTGGAACCCCAATGCC-ACCGGTCAGGTTCTCTGGC
66 CGCACA-CCCC-CCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGA-CGGTCAGGTTCTCCGGT
* * * * * *
19958176 GATGCTCCGGTGATGTTGCCCCGGCGAAGCAAAATGTGGCACCAGCACAAGCCCGAGCCCAGCAT
127 GATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* *
19958241 GTGCTGCCGCAA-CC-C--T-C-A---G-TC-----C-------G-A-TCCG-AT-CTTAGTCTG
191 GTGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * **
19958280 GGAACGAACTCCGTATGCCTAAGTCAACCAACAAAACGAGCGTGCGAGCGCTCAATCGGCCAGAG
256 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * * * * * *
19958345 AGGCGGGATGCGTAAGCCGAGGATCGG-CCGATCCCCTTCTGCGTGCTGCCGATCCTGCTACCAC
321 GGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGC
* * *
19958409 AACCCTC-AGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
386 AACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
19958473 ACGAGCGGGCGGG
450 ACGAGCGGGCGGG
19958486 TGGACAGCCA
Statistics
Matches: 16791, Mismatches: 1936, Indels: 831
0.86 0.10 0.04
Matches are distributed among these distances:
850 39 0.00
851 43 0.00
852 367 0.02
853 124 0.01
854 554 0.03
855 6 0.00
856 87 0.01
857 4 0.00
858 3 0.00
859 1 0.00
860 275 0.02
861 356 0.02
862 139 0.01
863 44 0.00
864 494 0.03
865 157 0.01
866 8 0.00
867 39 0.00
868 95 0.01
869 82 0.00
870 3 0.00
871 5 0.00
872 191 0.01
873 7 0.00
874 150 0.01
875 326 0.02
876 904 0.05
877 162 0.01
878 6 0.00
879 6 0.00
880 6 0.00
881 4 0.00
882 1 0.00
883 47 0.00
884 7 0.00
885 9 0.00
886 12 0.00
887 258 0.02
888 8 0.00
889 135 0.01
890 272 0.02
891 316 0.02
892 461 0.03
893 83 0.00
894 166 0.01
895 460 0.03
896 87 0.01
897 654 0.04
898 905 0.05
899 835 0.05
900 909 0.05
901 624 0.04
902 1077 0.06
903 2211 0.13
904 664 0.04
905 287 0.02
906 19 0.00
907 51 0.00
908 226 0.01
909 374 0.02
910 521 0.03
911 352 0.02
912 33 0.00
913 38 0.00
914 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGTGATG
CTCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
GCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCC
TCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTT
CACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCA
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
Found at i:19968432 original size:26 final size:26
Alignment explanation
Indices: 19968403--19968455 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19968393 CTGGTCTGAT
*
19968403 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGAATGGGAATGAACTTC-GTATG
19968429 CTTAGAATGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTTCGTATG
19968455 C
1 C
19968456 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTTCGTATG
Found at i:19970190 original size:26 final size:26
Alignment explanation
Indices: 19970152--19970204 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19970142 CTAATTTGAT
* *
19970152 CTTAGTCTGGGAATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
*
19970178 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
19970204 C
1 C
19970205 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:19970452 original size:13 final size:13
Alignment explanation
Indices: 19970434--19970463 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
19970424 TGCGCAAGCC
19970434 GTGGATCGATAGG
1 GTGGATCGATAGG
19970447 GTGGATCGATAGG
1 GTGGATCGATAGG
19970460 GTGG
1 GTGG
19970464 TAGGTGGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.20, C:0.07, G:0.50, T:0.23
Consensus pattern (13 bp):
GTGGATCGATAGG
Found at i:19973208 original size:714 final size:716
Alignment explanation
Indices: 19971828--19973327 Score: 2276
Period size: 714 Copynumber: 2.1 Consensus size: 716
19971818 TTGTTTCATG
* * * * * *
19971828 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-TCGGACCGAGGGTTACAGCA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGAACT-GGATCGAGGGTTGCGGCA
* **
19971892 TCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAG
65 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAG
* *
19971957 CATCGACGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCTGGGGGGGTGTGC
130 CATCGACGGAGAACCTGACAGACGGCATTGGAGTTCCGACGATCGGGGGGCCTGGGGGGGTGTGC
* * * *
19972022 GCACATGATGTGCGGTGGGTGCTGGTACTTGGCTCTTATTTTGGCCCCTTATCCCTCATCAAACC
195 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
19972087 TCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
260 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAA
* *
19972152 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAAAGTTTGGT
325 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAAAGTTTAGC
* * * * *
19972217 TGAATTTTTTTATGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGTCCAAAACT
390 TGAATGTTTTTATGCAAGCCAAAAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAAAT
* * **
19972282 CCTTTTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
455 CCTTCTGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* **
19972347 ACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
520 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAA
19972412 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
585 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * *
19972477 CCATGGCTTGCGCATCCCGTCTCTCTGGCCAG-CGTAGT-GCCCGCCCGCTCGCCCACTCATTTC
650 CCACGGCTCGCGCATCCCGTCCCTCTGG-CAGACGTAGTCGCCCCCCCGCCCGCCCACTCATTTC
19972540 GTC
714 GTC
* *
19972543 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGATCAAGGGTTGCGGCAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGAACTGGATCGAGGGTTGCGGCAG
*
19972608 CACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGTCGGAGC
66 CACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGC
* ** * * * *
19972673 ATCGCCGGAGAGGCTGACAGGCGGCATTGGAGTTCCGGCGATCGGGGGG-CT-GGGGGGTTTGCT
131 ATCGACGGAGAACCTGACAGACGGCATTGGAGTTCCGACGATCGGGGGGCCTGGGGGGGTGTGCG
19972736 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
196 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
19972801 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGTTTTGCTGCCAGTAGCAATTAAA
261 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAA
* * **
19972866 GTGTCTGAAATGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGC
326 GTGTCTAAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAAAGTTTAGC
* * *
19972931 TGAATGTTTTTGTGCAAGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAAT
390 TGAATGTTTTTATGCAAGCCAAAAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAAAT
*
19972996 CCTTCTGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
455 CCTTCTGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
19973061 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAA
520 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAA
* *
19973126 ATAGAAATGGCATTGGCACT-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
585 ATAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * **
19973190 TCCACGGCTCGTGCATCCCGTCCCTCTGGCTGACGTAGTGGCCGCCCCCCCGCCCGTCCACTTGT
649 TCCACGGCTCGCGCATCCCGTCCCTCTGGCAGACGTAGT---CGCCCCCCCGCCCGCCCACTCAT
19973255 TTCGTC
711 TTCGTC
* * * * *
19973261 GGTTGGCTTAGGCATACGGAGTTCGTTCTCAATCTAAGATAAGATC-GGATGGAGGGTTGCGGCA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGAACTGGATCGAGGGTTGCGGCA
19973325 GCA
65 GCA
19973328 GGATCGGCAA
Statistics
Matches: 708, Mismatches: 68, Indels: 15
0.90 0.09 0.02
Matches are distributed among these distances:
713 153 0.22
714 312 0.44
715 160 0.23
716 1 0.00
718 79 0.11
719 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (716 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGAACTGGATCGAGGGTTGCGGCAG
CACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGC
ATCGACGGAGAACCTGACAGACGGCATTGGAGTTCCGACGATCGGGGGGCCTGGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAA
GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAAAGTTTAGCT
GAATGTTTTTATGCAAGCCAAAAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAAATC
CTTCTGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAA
TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTCGCGCATCCCGTCCCTCTGGCAGACGTAGTCGCCCCCCCGCCCGCCCACTCATTTCGT
C
Found at i:19973460 original size:26 final size:26
Alignment explanation
Indices: 19973431--19973483 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19973421 GTTGACTTAG
*
19973431 GCATACGGAGTTCATTCCTAGGCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
*
19973457 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
19973483 G
1 G
19973484 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGGCTAA
Found at i:19974151 original size:8 final size:8
Alignment explanation
Indices: 19974140--19974172 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
19974130 GGAGCCCACC
19974140 CGCCCGCT
1 CGCCCGCT
19974148 CGCCCGCT
1 CGCCCGCT
*
19974156 CGCCTGCT
1 CGCCCGCT
19974164 CGCCCGCT
1 CGCCCGCT
19974172 C
1 C
19974173 ATTTCGTCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.00, C:0.61, G:0.24, T:0.15
Consensus pattern (8 bp):
CGCCCGCT
Found at i:19974782 original size:918 final size:891
Alignment explanation
Indices: 19972554--19976001 Score: 4382
Period size: 904 Copynumber: 3.8 Consensus size: 891
19972544 GTTGGCTTAG
* *
19972554 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGATCAAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCAAGGGTTGCGGCAGCACATGCTGG
* * * * *
19972618 GCTCGGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTC-TCGGGGCACCATCGCCGAAGCATCGACGGAG
** * * * * * * *
19972683 AGGCTGACAGGCGGCATTGGAGTTCCGGCGATCGGGGGGCTGGGGGGTTTGCTCACATGATGTGC
129 AACCTAACCGACGGCATTGG-GTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
19972748 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
19972813 CCCCCTTAAAGAGCATTTGAGATTTTACA-GTTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTT-CTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
19972877 GGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGCTGAATGTTTTT
322 GGGGACA-ATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
19972942 GTGCAAGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAA
386 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * ** *
19973007 AATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
451 AATTTTAAAAAATCCCGAACCGTAAAAAGGATCCAAAATCGTGAAAAATAGAAAACGAGTCGTCT
**
19973072 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAGAAA-TGG
516 TGCCATGAAACTTCACGTGAA-GCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAATTGG
** *
19973136 CATTGGCACTTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTCG
579 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTG
* ** * **** * * *
19973201 TGCATCCCGTCCCTCTGGCTGACGTAGTGGCCGCCCCCCCGCCCGTCC-ACTTGTTTCGTCGGTT
643 CGCATCCCGTATCTCTGGC---C----TGGCCGACGTAGCGCTCG-CCTGCTCGTTTCGTCGGTT
* * * * * ** *
19973265 GGCTTAGGCATACGGAGTTCGTTCTCAATCTAAGATAAGATCGGATGGAGGGTTGCGGCAGCAGG
700 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAAATCGAGGGTTGCGGCAGCAGG
* *
19973330 ATCGGCAAG-ACACAGAGGGGGACCCGATCGATCCCCGGCTTACGCATACT-GCCCCTCTGGCCG
765 ATCGG-GAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCAT-CTCGCCCCTCTGGCCG
* * * * *
19973393 GTTGAGCGCCCGCATGATCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGGCTAA
828 GATGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
19973457 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19973522 CTTGGGCATGTGATGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTC-TCGGGGCACCATCGCCGAAGCATCGACGGAGA
* *
19973587 ACTTAACCGACGGCATTGGAGTTCCGACGATCGGAGGGGCCTGGGGGGTGTGCGCACATGATGTA
130 ACCTAACCGACGGCATTGG-GTTCCGACGATCGG-GGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
19973652 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCAT
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19973717 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19973782 GGGGACAATTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTG
322 GGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19973847 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAAATCCTTCCAAAAAA
387 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * * * *
19973912 ATTTTAAAAAATCCCAAACGGCAAAAAGGATCCAAAATCGTAAAAAATAAAAAACGAGTCGTCTT
452 ATTTTAAAAAATCCCGAACCGTAAAAAGGATCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
19973977 GCCATGGAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCA
517 GCCATGAAACTTCACGTGAA-GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCA
* * * * *
19974042 CTAGCACACAGAAATATGAAGATGTGCCCAAACCCACCTACCACGCTATCGATCCACGGCTTGCA
581 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC-CTATCGATCCACGGCTTGCG
* * *
19974107 CATCCCGTTTCTCTGGCCGGCTTGGAGCCCACCCGCCCGCTCGCCCGCTCGCCTGCTCGCCCGCT
645 CATCCCGTATCTCTGG-C--C-T-G-G-----CCG-ACG-TAG--CGCTCGCCTGCT----CG--
*
19974172 CATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGG
689 --TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAAATCGAGGG
*
19974237 CTGCGGCAGCAGGATCGGGAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCTCGC
752 TTGCGGCAGCAGGATCGGGAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCTCGC
* * *
19974302 CCCTCTGGCCGGATGAGCGCCCACAAGCTCGTTTCGTGGGTTGAGTTACGCATACGGAGTTCATT
817 CCCTCTGGCCGGATGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
19974367 CCCAGTCTAA
882 CCCAGTCTAA
* * * *
19974377 GCATATGAAGTTCATTCCCAGTCTAAGATCGGAT-GGACCAAGGGCTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* *
19974441 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCATCGGGGCACCATCACCGAAGCATCGACGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTC-TCGGGGCACCATCGCCGAAGCATCGACGGAGA
* *
19974506 GCCTGACC-AGCGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGCTGTGCGCACATGATGTG
130 ACCTAACCGA-CGGCATT-GGGTTCCGACGATCGGGGGGCCGGGGGG-TGTGCGCACATGATGTG
*
19974570 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19974635 ACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTTCTGCCAGTAGCAATTAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19974700 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* **** *
19974765 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGTTTTTTTCAAGAAAAACTCCTTCCGA
387 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGC--CAAAAA-TCCTTCCGA
* ** *
19974830 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCG
448 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGGATCCAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
19974895 ACTTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGTCATAAAAAT
513 TCTTGCCATGAAACTTCACGTGAA-GCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAT
* * * *
19974960 TCG-ATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACGACCTATCGATCCACGGCT
576 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTATCGATCCACGGCT
* *
19975024 TGCGCATCCC--ATCTCT---CTGGCCGACGTAGTGCTCGCCTGCTCGTTTCGTCGGTTGCCTTA
641 TGCGCATCCCGTATCTCTGGCCTGGCCGACGTAGCGCTCGCCTGCTCGTTTCGTCGGTTGGCTTA
* * * *
19975084 GGCATACGAAGTTCATTCCCAGTCTAAGATC-GAACAACATTGAGGGTTGTGGCAGCAGGATTAG
706 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAA-ATCGAGGGTTGCGGCAGCAGGA-TCG
* * * ** * * * *
19975148 CG-GCACGCAGAGGTGGACCCGACCGATCCCCGGCTTGTGCATCCCG-CCCTCTGACTGGCTGAG
769 GGAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCTCGCCCCTCTGGCCGGATGAG
* *
19975211 AGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 CGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19975269 GCATACGGTGTTCATTCCCAGTTTAAGATTGGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * *
19975334 CTCGGGCATGTGCTGGTGCCGCATATTTCTTCGCTGGGGCACCATCGCCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCTC-GGGGCACCATCGCCGAAGCATCGACGGAGA
*
19975399 ACCTAACCGACGGCATTGGGGTTCC-AGCGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGT
130 ACCTAACCGACGGCATT-GGGTTCCGA-CGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGT
* *
19975463 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCACCAAACCTCGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
19975528 CACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGT-TGCCAGCAGCCGTTAAAGTGTCTGAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-TCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
19975592 ATGGGGATAGTTTTTTCAAATGGTCAC--AA------A-A--TCGAGTTTTTAGCT-AATTTTTT
320 ATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
* * *
19975645 GTTGTGCATGCCAAAAAAAATAAAAGGATCACGGCTACCAAGTTTGGGGCCAAAAATCCATCCGA
384 -TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
* *
19975710 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTGATTCATAAATCGTGAAAAATAGAAAACAAGT
448 AAAAATTTTAAAAAATCCCGAACCGTAAAAAG-GATCCA-AAATCGTGAAAAATAGAAAACGAGT
*
19975775 CGTCTTGCCATGAAACTTCACGTGAAGGTGTAAGGGACCATT-TCATGAATTTACAAGCCATAAA
511 CGTCTTGCCATGAAACTTCACGTGAAGCT-TAAGGGACCATTGT-ATGAATTTACAAGCCATAAA
* * *
19975839 AATGGCATTGGCATGCAGAAAGATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACG
574 ATTGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC-TATCGATCCACG
* * * *
19975904 GCTTGTGCATCCCGTCTCTCTGG-CTGG-CGTA-GT-GC-C-CGCCCGCTCGTTTCGTTGGTTGG
638 GCTTGCGCATCCCGTATCTCTGGCCTGGCCG-ACGTAGCGCTCGCCTGCTCGTTTCGTCGGTTGG
* *
19975963 GTTAGGCATACGGAGTTCATTCCCACTCTAAGATC-GAAC
702 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAAC
19976002 CGGAATGAGG
Statistics
Matches: 2248, Mismatches: 238, Indels: 138
0.86 0.09 0.05
Matches are distributed among these distances:
880 39 0.02
881 16 0.01
882 119 0.05
883 104 0.05
884 38 0.02
885 7 0.00
886 5 0.00
887 5 0.00
892 105 0.05
893 212 0.09
894 170 0.08
895 7 0.00
897 2 0.00
901 12 0.01
902 1 0.00
903 153 0.07
904 304 0.14
905 150 0.07
906 4 0.00
908 3 0.00
909 2 0.00
910 2 0.00
911 3 0.00
912 8 0.00
913 1 0.00
916 1 0.00
917 6 0.00
918 240 0.11
919 125 0.06
920 211 0.09
921 30 0.01
922 156 0.07
923 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCTCGGGGCACCATCGCCGAAGCATCGACGGAGAA
CCTAACCGACGGCATTGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTT
TAAAAAATCCCGAACCGTAAAAAGGATCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCATTGGC
ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTATCGATCCACGGCTTGCGCATCCC
GTATCTCTGGCCTGGCCGACGTAGCGCTCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGAACAAATCGAGGGTTGCGGCAGCAGGATCGGGAGCACGCAGA
GGGGGACCCGATCGATCCCCGGCTTACGCATCTCGCCCCTCTGGCCGGATGAGCGCCCGCAAGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19975281 original size:26 final size:26
Alignment explanation
Indices: 19975243--19975295 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19975233 GTTGACTTAG
19975243 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19975269 GCATACGGTGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19975295 G
1 G
19975296 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19976880 original size:25 final size:26
Alignment explanation
Indices: 19976829--19976880 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19976819 GTTGACTTAG
*
19976829 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19976855 GCATACGAAGTTCATT-CCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19976880 G
1 G
19976881 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19977764 original size:26 final size:26
Alignment explanation
Indices: 19977728--19977780 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19977718 GTTAACTTAG
19977728 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19977754 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19977780 G
1 G
19977781 ATCAAACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19978722 original size:159 final size:158
Alignment explanation
Indices: 19978427--19978801 Score: 464
Period size: 159 Copynumber: 2.4 Consensus size: 158
19978417 TGCCCGCCCG
* * * * *
19978427 CCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGTGTCCATTCCCAGTCTAAGATCAGACC
1 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT-CATTCCCAGTCTAAGATCAGACC
* * * * * * **
19978492 AGACTGAGGGTTGCAGTAGTAGTATCGACAGCACGTAAAGGGGGACCCGGTCGATCCCCGACTTG
65 AGACCGAGGGTTGCAGCAGAAGTATCAACAGCACGCAAAGGGAGACCCGACCGATCCCCGACTTG
* * *
19978557 TGCATCCCACCCCTCTGGCTGGCTGGGCA
130 CGCATCCCACCCCTCTGGCCGGCTGAGCA
* * *
19978586 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCTCAGTCTAAGATCGGACC
1 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG-TCATTCCCAGTCTAAGATCAGACC
* * *
19978651 GGACCGAGGGTTGCGGCAGCAAGT-TCAACAGCACGCAAAGGGAGACCCGACCGATCCCCGGCTT
65 AGACCGAGGGTTGCAGCAG-AAGTATCAACAGCACGCAAAGGGAGACCCGACCGATCCCCGACTT
* *
19978715 GCGCATCCCGCCCCTTTGGCCGGCTGAGCA
129 GCGCATCCCACCCCTCTGGCCGGCTGAGCA
* * *
19978745 CCCACATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAAG
1 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG-TCATTCCCAGTCTAAG
19978802 CATACGAAAT
Statistics
Matches: 184, Mismatches: 30, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
159 180 0.98
160 4 0.02
ACGTcount: A:0.20, C:0.31, G:0.27, T:0.22
Consensus pattern (158 bp):
CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTCATTCCCAGTCTAAGATCAGACCA
GACCGAGGGTTGCAGCAGAAGTATCAACAGCACGCAAAGGGAGACCCGACCGATCCCCGACTTGC
GCATCCCACCCCTCTGGCCGGCTGAGCA
Found at i:19978805 original size:26 final size:26
Alignment explanation
Indices: 19978775--19978827 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19978765 GTTGACTTAG
* * *
19978775 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
19978801 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
19978827 G
1 G
19978828 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:19979861 original size:10 final size:9
Alignment explanation
Indices: 19979844--19979871 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
19979834 GTTCTAGCAA
19979844 TCGGGGGGG
1 TCGGGGGGG
19979853 TCGGGGGGG
1 TCGGGGGGG
19979862 TCGGGGGGG
1 TCGGGGGGG
19979871 T
1 T
19979872 GCACACAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.00, C:0.11, G:0.75, T:0.14
Consensus pattern (9 bp):
TCGGGGGGG
Found at i:19980604 original size:26 final size:26
Alignment explanation
Indices: 19980568--19980620 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19980558 GTTGACTTAG
* *
19980568 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19980594 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19980620 G
1 G
19980621 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19981689 original size:12 final size:12
Alignment explanation
Indices: 19981672--19981702 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
19981662 GTGCTGGTAC
19981672 TTGGCCCTTATA
1 TTGGCCCTTATA
19981684 TTGGCCCTTATA
1 TTGGCCCTTATA
19981696 TTGGCCC
1 TTGGCCC
19981703 CCTATCACTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.29, G:0.19, T:0.39
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:19983434 original size:878 final size:872
Alignment explanation
Indices: 19978801--19994092 Score: 13684
Period size: 878 Copynumber: 17.0 Consensus size: 872
19978791 CCCATTCTAA
* * * * *
19978801 GCATACGAAATTCATTCCCAGTCTAAGATCGGACC-GGACCGACGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGTACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
19978865 GCTCGAGCATGTGCTAGTGCCGTATTTTTCTTCATCGGGG------CA-C----CATCGTCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAG
* * * * ***
19978919 AACCTGACCGACGGCATTAGGGTTCCGGCAATCGAGGGCACCGGGGGGTGTGCGCACATGATGTG
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGTCGGGGGGTGTGCGCACATGATGTG
* *
19978984 CGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
19979049 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGGCTGTAGCAATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19979114 GGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
19979179 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
** * * ** * *
19979244 ATTTTAAAAAATCCCAAACTGTAAAAAGTTTTGAAAATCGTGGAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
19979309 GCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
19979374 TTGGCATGCAGAAATAT-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
19979438 CATCCCGTCTCTCTGGCCGACGTAAT----GCCCGCCTGCCCGTTCATTTCGTCGGTTGGCTTAG
649 CATCCCGTCTCTCTGGCCGGCGTAGTCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * *
19979499 GCATACGGAGTTCATTACCAGTCTAACATCAGACCAGATCGAGGGTTACGACAGTAGGGTCGACA
714 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * *
19979564 GCACGTAGAGGGGGACCC-GACTGATCCTCGACATGCGCATCCCGCCCCTCTGGCCGGTTGAGTG
779 GCACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCG
* *
19979628 CCCGCACACTTGTTTCGTGGGTTGACTTAG
843 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
19979658 GCATACGGAGTTCATTCCCAGTCTAAGCATGTGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-A--T-CAG---A----C---C--AG-T--------AC
* * * *
19979723 CGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATTTGCTGGTGTCGCATATTTCTTCGTCGGGG
41 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * *
19979788 CACCATCGTCGGAGCATCGCCGGAGAACCTGATCGGCAGCATTGGGGTT-CTAGCAATCGGGGGG
106 CACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATC-GGGGG
* * *
19979852 GTCGGGGGGGTCGGGGGGGTGCACACAAGATGTGCGATGGGTGCTGGTACTTGGACCTTATATTG
169 GTC-GGGGGGT-------GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
19979917 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTCAAGAGCATTTGAGATTTTACAG
226 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * *
19979982 GTTTGCTACCAGTGGCCGTTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
291 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
19980047 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-AGCATGCCAACAAAAATACAAGGATGACGTC
356 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * *
19980111 TACTAAGTTTGGGGCCAAAATTCCTTCCAAAAAAATTTTAAAAAAT-CTCAAACCGCAAAAAGTT
421 TACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTT
19980175 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
484 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * **
19980240 ACCATTGTATGAATTTACAAGCCATAAAAAAGGTATTGGCACACAGAAATATGAAGATGTGCCTA
549 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * * *
19980305 AACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCTGTCTCTCTAGCCGACGTAGTGCCC
614 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTCCCC
* * *
19980370 GCCCGCCTTCCAGGCCACTCGTTTCGTCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAA
679 GCCCG-C--CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * *
19980435 GATCAGACCGGACCGAGGGATGCGACAGTAGGATCGGTAGCACGTAGAGAGGGACCCGGTCGATC
740 GATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATC
* * * *
19980500 CCCGGCTTGTGCAT-CTAGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTGAC
805 CCCGGCTTGCGCATCCCA-CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
19980564 TTAG
869 TTAG
* *
19980568 GCATACAGAGTTCATTTCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACTAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A----C---C----A---G--T--AC
* * * * * * *
19980633 CGAGGGTTACGGCAGCACATACTGGGCTCAGGCATTTGCTGGTGTCGTATTTTTCTTCGCCGGGG
41 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * *
19980698 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGAGGG
106 CACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGG
* * ** *
19980763 CCGGGGGGTGTGTGCATGTGATGT-CTGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTA
170 TCGGGGGGTGTGCGCACATGATGTGC-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
19980827 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTG
234 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
19980892 CCAGTGGCCATTAAAGTGCCTGAAATGGGGACACTTTTGTCAAATGGTCACAAAATCTTGTACAC
299 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
19980957 TTTGAGTTTTTAGCTGAATTTTTTTCTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
364 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * ** *
19981022 TT-GGG-CACAAATTCCTTCCAAAAAAATTTTAAAAAAT-CTCAAGCCATAAAAAAATTTCAAAA
429 TTGGGGCCA-AAACTCCTTCC-AAAAAATTTTAAAAAATCCTGAA-CC-GCAAAAAGTTTCAAAA
* * *
19981084 ATCGTGAAAAAT-GAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGATTAAGGGACCATT
490 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
19981148 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAAAAATATGAAGATGCGCCTAAACCCA
555 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * *** *
19981213 CCTACCACCCTATCGATCCATGCCTTGCGCATCCCGTCTCTCTGGCCAATGTAGT----GCCCGT
620 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTCCCCGCCCGC
* **
19981274 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCA
685 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * ** * * * * * *
19981339 GACCGAGGGTTACGGCAGTAGGATCGGTAGCATGCCGAGGGGGACCCAGCCAATCCCCGGCATGC
750 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGC
* * ** *** *
19981404 GCATTCCACCCCTTTCACCGGCTGAGCGCATACACGCTCATTTCGTGGGTTGACTTAG
815 GCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
19981462 GCATACAGAGTTCATTCCTAGTCTAAGATCGGACTAG-ACCGAGGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGTACCGAGGGTTGCGGCAGCACATGCTGG
* * * ** * * * * *
19981526 GCTCGAGCATGGGTTGGTGCCATATTTTTCTTCATCAGGGCACCATC-GCTGGAGCATTGTTGGA
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATC-GGAGCATCGTCGGA
*** * * * *
19981590 GAACCTGACCAATGGCATTGGGGTTCCGGCGATCGGAGGGGCCGAGGGGTGTGCACACATGATGT
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGTCGGGGGGTGTGCGCACATGATGT
*
19981655 -CTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTTATATTGGCCCCCTATCACTCATCAAA
194 GC-GATGGGTGCTGGTA-------C-----TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * *
19981719 CCTCGAGACCTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCTATT
246 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
19981784 AAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
311 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * *
19981849 GCTGAATTTTTTTGTGCATACCAATAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGTCAAAA
376 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
*
19981914 C-CCTTTCCAAAAAAATTTTGAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
441 CTCC-TTCC-AAAAAATTTT-AAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
* *
19981977 AAAAAACGAGTCGTCTAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
502 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
**
19982042 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
567 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * **** * * *
19982107 TCAATCCATGACTTGTGCATCTCGTCTCTCTGGCCGGCGTAGTGGTTGCCCGTCCGTCGGCTCGT
632 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTCCCCGCCCGCCCGCCCGCTCGT
* ** * * **
19982172 TTCGTCGGTTGGCTTAGGCATACGTAGTGAATTCCTAGTCTAAGATCAAACTGGACCGAGGGTTG
697 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
* * * * * * * ** **
19982237 CCGTAGCAGGATCAACAGCACGCAAAGGGGTACCCGATCGATCCTCGATTTGCGCATCCCGTCCC
762 CGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCC
* * * * * *
19982302 TCTGGCCGACTGAGCGCTCGCACGCTTGATTCGTGGCTTGATTTAG
827 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
19982348 GCATACGGAGTTCATTCCCAGCCTAAGCATACATAGTTCATTCCCAGTATAAGTTCAGATCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A---CC------AG-T---A-C---C
* * * * **
19982413 TGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTAGTGCCGTATTTTTCTTCACCGGGG
42 -GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
** *
19982478 CA-C--CATC---G--TC-T----G-A--T-------GGCATTAAGGTTCCGACGATCGATGGGG
106 CACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGG
* *
19982520 TCGGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCTTTATATTGGCCCCCT
170 TC-GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
19982585 ATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
233 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
19982650 GCCAGTAGGCATAAAAGTGT-TCGAAATGGGGACACTTTTTTCATATAGTCACAAAATCTTGTAC
298 GCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * *
19982714 ACTTCGATTTTTTGGCTGAATTTTTTTGTGCATGCAAAGAAAAATACAAGGATCAGGTCTACCAA
362 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
*
19982779 GTTTGGGGCCAAAACTCCTTCCAAAGAAATTTTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAA
427 GTTTGGGGCCAAAACTCCTTCCAAA-AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAA
* * *
19982844 TCGTGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACGTCAAGGCTTAAGGGACCATTG
491 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
19982909 TATGAATTTACAAGCCATAAATATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
556 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* ** * * *
19982974 CTACCGCCCTATTAATCCACGGCTTGTGCATCCCGTCTCTCTGGCCAGCGTTGTACCCAACCGCC
621 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT--CC--CCGCC
* * * * **
19983039 GGCCCGCCCGCTCGTTTCGTCGATTAGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATTGGA
682 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * *
19983104 GCAGACCGAGGGTTGCAGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGGTCCCTGGCT
747 CCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCT
** * * ** * * * * *
19983169 TGCGCATCTTACCCCTCTAGCCGGCTAATTGCCCACACACTTGTTTCGTTGGCTGACTTAG
812 TGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
19983230 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACC-GTACCGAGGGTTGCAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGTACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * * * * *
19983294 GCTTGGGCATGTGCTGGTGTCGTATTTTTTTTCATCAGGGTACCATCACCGGCGCATCGTCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAG
** * *
19983359 AACCTGACCAACGGCATTGGGGTTCCGGCGATCGGGAGGGACGGGGTGGTGTGCGCACATGATGT
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGTCGGGG-GGTGTGCGCACATGATGT
* *
19983424 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19983489 CACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
19983554 TGGGGACATTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTA
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * * *
19983619 ATGCACGCCAACAAAAATAC-AGGCATCTCGGCTACCAAGTTCGGGGCCAAAAATCCTTTCAAAA
389 GTGCATGCCAACAAAAATACAAGG-ATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAA
** *
19983683 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
19983748 TTGGCATTAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAGGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19983813 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCATGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
19983878 CGCATCCCATCTCTCTGGCCGGTGTAGTGCCCGCCTGCCCGCCCGCTGCCGGCTTGTTTCGTCAG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGT--CC-CC-GCCCGCCCGC--CC-GCTCGTTTCGTCGG
* * * * *
19983943 TTGGCTTAGGCTTACAGAATTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCA
705 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
* * * * *
19984008 GGATAGACAGCACGCAAAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGTCG
770 GGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCG
* *
19984073 GCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGATTTAG
835 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
19984111 GCGTACGGAGTTCATTCCC-GTTTCAAGATCGGACCAG-ACCGAGGGTTACGGTAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCT-AAGATCAGACCAGTACCGAGGGTTGCGGCAGCACATGCTG
* * * **
19984174 GGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGTACCATCATCGGAGCATCACCGGA
65 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGA
* *
19984239 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTG
*
19984304 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
19984369 ACTCCCTTAAAGAGCAGTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGCGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
19984434 GGGGACACATTTTTCAAATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA---TTTTT
* * * * *
19984499 TTTTGCATGCTAGCAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* ** ** *
19984564 AAATTTAAAAAAAATCCCAAATAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGT
452 AAATTT-TAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
19984629 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * ** * * **
19984694 GCATTGGCACGTAGAAATATGGGGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGACAA
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * ** * * *
19984759 ACGCATCCCGTCTCTCTGGCCGGTGTAGTGCCTGCCCGATCGCCCGTTCGTTTCGTCAGTTAGCT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
19984824 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGCTGCAGAAGCAGGATCG
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCG
* * * * * ** * *
19984889 ATAGCACGCAGAGGGTGACCCGGTCAATCCTCGACTTGCGCATCCTGCCACTCTGGCTGGCTGAG
776 ACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
19984954 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
841 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
19984986 GCATACGGAGTTCAATCCAGTCTAAACATACGGAGTTCATTCCAAG-TCTAAGATCAAACCGAAC
1 GCATACGGAGTTC-AT----TC----C---C--AG-TC--T--AAGATC--AGA-C---CAGTAC
* **
19985050 CGAGGGTTGCAGCAGCAGGATCAACAGCATGCAGAGGGGGACTCGATCGATCCCCG-GCTTGCGC
41 CGAGGGTTGC-G--GCA-G-----CA-CATGC----TGGG-CTCGGGC-AT----GTGC-TG-G-
* ** ** * ** * * * *
19985114 AT-CTCGCCCCTTTGGCCGACTGAACGCCAGCACGC-TCGTTTCGTGGGTTGACTTAGGCTTACG
83 -TGC-CG--CATTT-TTCTTC-G-TCG-GGGCAC-CATC--ATC---GG-AG-C--A-TCGT-CG
** * ** * * * * * *** * *
19985177 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGG
128 GAGAACCTGACC-GGC--GGCAT-TGG-G---GTT-CC-G---ACGATC-G-GGGGGTCGGGGGG
* * * * ** * * *** ** * *
19985241 T-TACGGCAACA-CATGCTGGGCTCAG-GCAT-GTGC-TGGTGCC--ATATTTTTCTTC-GTCGA
178 TGTGC-GC-ACATGATG-TGCGATGGGTGC-TGGTACTTGG-CCCTTATATTGGCCCCCTATC-C
** * * * * * *** * ** * *
19985298 GGCA-CCATCGTCGGAGCATCATCAGAGAACCTGACCGACGGCA-TTGAGGTTTCAACGATCAGA
237 CTCATCAAACCTC-GAG-AAC-TCACACCCCCTTAAAGA--GCATTTGAGATTT----TA-CAG-
** * *** * * * * * *
19985361 G-GGGCCGGGGGGTGTGCGCACATGATGAGCGATGGGTGCTGGTACT-TGGAC-CTTATATTGGA
291 GTTTG-C--TGCCAGT-AGC-CAT--T-A---AAGTGT-CT-GAAATGGGGACACTT-T-TT---
* ** ** * ** * * * * * ****
19985423 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTAA-CAGG
338 -TCAAAT-GGTCA-CAAA-ATCTTG---T-ACA----CTT--CGAG-TTTTTAG-CTGAATTTTT
** * * * ***** *
19985487 TT-TGC-TGCCAGTAGATATTCAA-G-T---GTCTGA--AA---TGGGGACCCTTTTTTCAAATG
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGG--CCAAAACTC--CT-
* * * * ** * * * ** ***** *
19985540 ACCACAAAATCTTGTACACTTCAAGTTTTTAGCTG--AATGGTTTTGTGCAT-GTGAACATAAAT
446 TCCAAAAAAT-TT-TA-A---AAAATCCTGAACCGCAAAAAGTTTCAAAAATCATG-A-A-AAAT
* * * ** *** ***
19985602 ACAAGGATCAC-ATCTACCAAGT-TTGGGGCCA-AAAATCCTTC-CGAAAAAATTTTAAAAAATC
502 AGAA--A--ACGA-GT--C--GTCTT---GCCATGAAA--CTTCACG-TGAAGGCTTAAGGGA-C
** ** * ** * * * *
19985663 TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTC
551 -C--ATTGTATGAA-TTT-ACAAGCCAT-AAAAAT-G---GC-A-TTGGCATG-CA-GAAA--T-
* * ** *** ** * * *** * **
19985728 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC-AT--AAAAATGGCATTG-GCAAGC
599 A--TGAA-G---ATGTG-CC--TAAACCCACCTACCACCCTATCGATCCACGGC-TTGCGCATCC
* *** * ** * ** * *** * *
19985789 AG-AAATATGAAGATGTGCCTAAACCCAC-CTACCACCCTATCGATCTACGGCTTGTGCATCCCG
654 CGTCTCTCTG--GCCG-GCGTAGTCCC-CGC--CCGCCCGCCCG--CT-C-G-TT-T-CGT-CGG
** ** * * * * *** * * * ** *
19985852 TCT--CTCT-GGCCGACGTTGTGCCTGCCC-GCCCTCCCACCCGCTCCTTTCATCG-GTTGGCTT
705 T-TGGCT-TAGGCATACGGAGTTCATTCCCAG-TCTAAGATCAG-ACC--AGACCGAG--GG-TT
* * * * * * * *
19985912 -AGGCATACATAGTTCATTC-CCAGTCTAAGATTAGATCGGATCGAGGGTTGCGACAGCAGGATT
761 GCGGCA-GC--AG--GA-TCGACAG-C-ACG--CAGA---G---G-GGG--ACC----C-GG--T
* * * ** * *
19985975 GGTAGCACGCAAAGG-GGGACCCGGCCGATCCCCGGCATGCGCATCCCGCCCCTTTGGCCGACTG
800 CG-ATC-C-C--CGGCTTG---C-G-C-AT------C---C-CA-----CCCCTCTGGCCGGCTG
* *
19986039 AGCGCCCGCGCGCTCGTTTCGTGGGTTAACTTAG
839 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
19986073 GCATACGGAGTTCATTCCCAGTCTAGGCATACGGAGTTCATTTCATTCCCAATCTAAGATCGGAT
1 GCATACGGAGTTCATTCCCAGTCT----A-A--GA--TCA---GA----C---C----A---G-T
* * *
19986138 CGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCGTATTTTTCTTCGT
39 ---ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
** * * * * * * * * *
19986203 CGGGGTGCCACCGTCGGAGCATCATCGGAGAGCCTGACCTGTGGCACTGGGATTCCGATGATCAG
101 CGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-G
* * * *
19986268 GGGGGCCAGGGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCGTTATATTGGCCC
165 GGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
19986333 CCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
230 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
19986398 GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGT
295 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
19986463 ACACTTCGAGTTTTTAGCTGACTTTTCTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACC
360 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * *
19986528 AAGTTTGGGGCCAAAACTCCTTCCGAACAAATTTTAAAAAAACCCGAACAGCAAAAAGTTTCGAA
425 AAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAA
* * * *
19986593 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTCAAGGCATAAGGGACCGT
489 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
19986658 TGTATGAATTTACAAGCCGA-AAAAAAGGCATTGGCATGTAGAAATATGAAGAGGTGCCTAAACC
554 TGTATGAATTTACAAGCC-ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * *
19986722 CACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTTTCT-TGGCCGGCGTAGTGCCCGCCT
618 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTCCCCGCCC
* * *
19986786 GCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAAAC
683 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
** * ** **
19986851 TGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACTTGACCGATCCCCGGCTT
748 CAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTT
* * * * * * * * * * *
19986916 GTGCATGCCGCCGCTCTAGCTGGTTGAGCACTCGGACTCTCGTTTCGTGGGTTGACTTAG
813 GCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
19986976 GCATACGGAGTTCATTCCCTGTTTAAGATCAGACCAG-ACCGAGTGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGTACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * * * * *
19987040 CCTCGAGCATGTGCTGCTGCCACAATTTTGTTCGTCGGGGTACCATCGTCGGAGCATCATCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAG
* * * * * * *
19987105 AACCTAACCAGCGGTATTGGGGTTCTGGCGATCGGGGGGGCAGGGGGTGTGCGCACATGATGTGC
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGC
*
19987170 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
19987235 CCCCATTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
19987300 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTGTTTTT-
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTG
* *
19987364 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAA
* * * *
19987429 GTTTTAAAAAATCTTAAACCGTAAAAAGTTTCAAAAATCATGACAAAA-A-AAAACGAGTCGTCT
454 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGA-AAAATAGAAAACGAGTCGTCT
*
19987492 TGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** *
19987557 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
19987622 GCATCCCGTCTCTCTGGTCGGTGTAGTGCCCGCCCGCCCGGCCGCTCGTTTCATCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * *
19987687 GGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGATCGATGGTTGCGGTAGCAGGATCGAT
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * *
19987752 AGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCACCCCTCTGACCGGCTGAGCG
778 AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCG
* * * *
19987817 CCCGCACACTCGTTTCATAGGTTAACTTAGGCATACGG
843 CCCGCACGCTCGTTTCGTGGGTTGAC-T-----TA--G
*
19987855 AGTTCATTCCTAGTCTAACCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGT
1 -G-------C-A---T-A-C----GGAGTTCATTCCCAGTCTAAGATCAGACCAGTACCGAGGGT
* * * *
19987919 TGCGACAGCACATGCTGGCCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC
48 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * * * *
19987984 GTCGGAGCATCGCCCGAGAACCTGACCGGCGGCATTGGAGTTCCGATGATTGGGGGGCCGGGGGG
113 ATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGTC-GGGGG
*
19988049 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCAT
177 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * * *
19988114 CAAGCCTCAAGAACTCACAACCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
242 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
19988179 CAGTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTT
307 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * * * * * *
19988244 TTTAGCTGAAGTTTTTTGTGCAAGCCAACAAAAATACAAGTATCATGTCTACGAACTTCGAAGG-
372 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGGC
* * * *
19988308 CAAAACCCCTTCCAAAAAAATTTTAAACATTACC-GAACCGTAAAAAGTTTCAAAAATCATGAAA
436 CAAAACTCCTTCC-AAAAAATTTTAAAAAAT-CCTGAACCGCAAAAAGTTTCAAAAATCATGAAA
19988372 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
499 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
19988437 TACAAGCCATAAAAATGGCATTGGCCTACAGAAATATGAAGATGTGCCTAAACCCACCAACCACC
564 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * *
19988502 CTATCGATCCACGGCTTACCCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGTCTGCCCGCC
629 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTCCCCG-CC--C-GCCCGCC
* * * * *
19988567 CGCTCGTTTCGTCGGTTGGCTTAGGCATGCGGAGTTCATTCGCAGTCTAAGATCAGATCGGATCG
690 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* ** * ** * *
19988632 AGGGTTGTGGCAGCAGGATCGACAGCACAAAGAGGGGTACCCTTTCGATCCCCAGCTTGTGCATC
755 AGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATC
* * * **
19988697 CCATCCCTCTGGCCGACCGAGCATCCGCACGCTCGTTTCGTGGGTTGACTTAG
820 CCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
19988750 GCATACGGAGTTCATTCCCAGTCTAAACATACGAAGTTCATTCACAGTCTAAGATTGGACCTGAT
1 GCATACGGAGTTCATTCCCAGTCT----A-A-G-A--TCA--GAC---C--AG--T--A-C----
* * * * * * *
19988815 CGAGGGTTGCGACAGCAGATGCTGGGCTCAGGCATGTGTTGGTGCCACTTTTTTCTTCGTCAGGG
41 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* *
19988880 CA-C--CATC---G--TC-T--GAGAACCTGACCGGCGGTATTGAGGTTCCGACGATCGGGGGGG
106 CACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG
19988934 TCGGGGGGTGTGCGCACATGAT-TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
170 TCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
19988998 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGC
235 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
19989063 CAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGT
300 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * * *
19989128 TCGAGTTTTTTGTTTAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACATTTACCAAGTT
365 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * *
19989193 TGGGGCCAAAATTCCTTCTGAAAAAATTTTAAAAAAT-CTCGAACCACAAAAGGTTTCAAAAATC
430 TGGGGCCAAAACTCCTTC-CAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATC
* * * *
19989257 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAAGCTTAAGGGACCATTGTC
493 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* **
19989322 TGAATTTACAAGCCATAAAAATGCCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
558 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * ** *
19989387 ACCATCCTATCGATCCACGACTTATGCATCCCGTCTCTCTAGCCGGCGTAGTGCCTGCCTGCCCG
623 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-CC--CC-GCCCG
* * * * *
19989452 CCCGCCCGTTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACC
684 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * *
19989517 AAACTGAGGGTTGCGGCAGCAGGATC-ACCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTT
749 AGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTT
* * * * * * * * * *
19989581 GCTCATCCCGCCCCTCTAGCCAGATGAGCACCCGTACACTCGTTTCATGGGTTGACTTAT
813 GCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
19989641 GCATACGAAG-T--TT---A---T----TC---CCAG-ACCGAGGGTTGCGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGTACCGAGGGTTGCGGCAGCACATGCTGG
* * ** * *
19989689 GCCCGGGCATGTGCTGGTGCCGTATTTTTCTTTATCGGGGCACCATCACCAGAGCATCGTCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAG
*
19989754 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGTGTGTGCACATGATGTGC
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGC
* *
19989819 GATGGGTGCTGGTACTTGGCCATTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
** *
19989884 CCCTTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19989949 GGGACTCTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** * *
19990014 GCATGCCAACAAAAATACAAGGATCACATCTAATAAGTTTAGTGCCAAAACTCCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAA
* * * * *
19990079 -TTTAAAAACTCGTGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
19990143 CCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
19990208 TGGCATGCAGAAATA-GAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACAGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *** * * * * * *
19990272 AACCTACCTCTCTGGCCGACGCAGTGCCCGCCCGTCCGCCCGCTCGTTTCGTCGATCGGCTTAGG
650 ATCCCGTCTCTCTGGCCGGCGTAGTCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
** * * * *
19990337 CATACGGAGTTCATTCCCAGTCTAAGATTGGATC-GAACCAAGGGTTGCGGCAGCAGGATTGGCA
715 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
19990401 GCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGC
779 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
* * *
19990466 CTGCATGCTCGTTTCGTGGGTTAACTTAG
844 CCGCACGCTCGTTTCGTGGGTTGACTTAG
19990495 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCGAACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A-CC--AG-T---ACC-G--
* * * * **
19990560 CAAGGGTTGTGACAGCCCATGCTGGGCTCGGGAATGTGCTGGTGCCATATTTTTCTTCGTCGGGG
43 --AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * *
19990625 CACCATCGTCAGAGCATCGTCGGAGAACCTGATCGGCGGCATTGGGGTTCCTG-CGATCGAGGGG
106 CACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC-GACGATCG-GGGG
* * *
19990689 GCCGGGAGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCAT
169 GTCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
19990754 ATCCCCCATCAAACCAT-GATAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGATTGC
233 ATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
19990818 TGCCAGTAGCCATTAAAGTGTCTGAAATGGCGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
297 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
19990883 ACTTCGAGTTTTTAGCTGAATTTTTTT-TTCTTGCCAAAAAAAATACAAGGATCACGTCTACCAA
362 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * *
19990947 GTTTGGGACCAAAACGCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
427 GTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAA
* * *
19991012 TCATGAAAAATAGAAAACAAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGAGACCATTG
491 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
19991077 TATGAATTTACAAGCAATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAATCCAC
556 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
** * *
19991142 CTACCACCCTATCGATCCACGGCTTGCAAATCTCGTCACTCTGGCCGGCGTAGT----GCCCGCC
621 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTCCCCGCCCGCC
*
19991203 CGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
686 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * * ** *
19991268 ACAGAGGGTTGCAGTAGCAGGATTGGCAGCACACAGAGGGGGACCCGACCGATCCCTGGCTTGCG
751 ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCG
* * *
19991333 CATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
816 CATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
19991390 GCATACGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCGGACTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A----C---C----A---G--T--AC
* * * *
19991455 CGAGGGTTGTGGCAGCACATGTTGGGCAT-GGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGAG
41 CGAGGGTTGCGGCAGCACATGCTGGGC-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * * *
19991519 GCACCATCACCTGAGCATCGTCGAAGAACCTGACCAGCGGCATTGGGGTTCCGACAATCGGGGGG
105 GCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
* * * *
19991584 TCGGGGGGTGCGTGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCATAT
170 TCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * * *
19991649 CCCTAATCAAATCTTGAGAACTCACACCCCCTAAAAGAGCATTTGAGATTTTTCAGGTTTGCTGC
235 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
19991714 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACT
300 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
19991779 TCGAATTTTTAGCTGATTTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
365 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * *
19991844 TGGGGCTAAAACTCCTTCCGAAAAAACTTTTAAAAAAT-CTCGAACTGTAAAAAGTTTTAAAAAT
430 TGGGGCCAAAACTCCTTCC-AAAAAA-TTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAAT
* * *
19991908 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAATCTTCACGTGAAGGCTTAAGGGACCATTAT
492 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
** *
19991973 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAATATGTGCCTAAACCCACC
557 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * * ** **
19992038 AACCACCCTATTGATCCACAGCTTGCGCATCCCATCTCTCTGGCTGGC--A-T-CGTGGTCGCCC
622 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTCCCCGCCCGCCC
* * * * ** *
19992099 GCTCGCT-GTTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGG
687 GCCCGCTCG-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * *
19992163 ACCGAGGGTTGCAGCAGCAAGATCGTCAGCACACAGAGGGGGACCTGGTCGATCCCCGGCTTGCG
751 ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCG
* * *
19992228 CATCCCATCCCTCTGGCCGGCTGAGCG-TCGACACGCTTGTTTCGTGGGTTGACTTAG
816 CATCCCACCCCTCTGGCCGGCTGAGCGCCCG-CACGCTCGTTTCGTGGGTTGACTTAG
*
19992285 GCATACGGAGTTCATTCCCAGTCTAAGCGTATGGAGTTCATTCCCAATCTAAGATTGGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAA--G-AT-CAG---A----C---C--AG--T-------AC
* * * * *
19992350 CGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTGGCCGGAG
41 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * ** * *
19992415 CACCATCGTCAGAGCATCACCGGAGAACCTGACCGGTGGCAGTGGGGTTCCGACGATCGGGGGGG
106 CACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG
* *
19992480 TCGAGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
170 TCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
19992545 CCCTCATCAAACCTTGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
235 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
19992610 CAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
300 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
19992675 TCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
365 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
19992740 TGGGGCCAAAACACCTTCCGAAAAAATTTTCAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
430 TGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCA
*
19992805 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
494 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
19992870 GAATTTACAAGCCATAAAAATGGCAATGGC-TCGCAAAAATATGAAGATGTGCCTAAACCCACCT
559 GAATTTACAAGCCATAAAAATGGCATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * * * *
19992934 ACCATCCTATCGATGCACGGCTTGCGTATCTCGTCTCTCTGGTCGGTGTAGTGCCCGCTCACCCG
623 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT--CC-C-CGCCCG
* * * * *
19992999 CCCGCTCGATCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTTATTCCCAGTCTAACATCAGACC
684 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
** * * * * *
19993064 AGATTGAGGGTTACGGTAGCAAGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTA
749 AGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTG
* * * * *
19993129 CGCAT--CACTTCCTTTGGCCGGCCGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAG
814 CGCATCCCAC-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
19993187 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCAGCAGCATATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGTACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
19993251 GCTCAGGCATGCGCTGGTGCCGCATTCTTCTTCG-CAAGGGCACCATCGTCGGAGCATCGCCGGA
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCATCGGAGCATCGTCGGA
* * * * *
19993315 GAACCTGACCGGTGGCTTTTGGGTTTCGACGATCGGGGGCATCGGGGGGGGTGTGCGCACATGAT
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GTC--GGGGGGTGTGCGCACATGAT
*
19993380 GTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
19993445 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
19993510 AATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
19993575 TTGTGCATGCCAACAAAAATACAAGGATCA-GTTCTACCAAGTTTGGGGCCAAAAATCCTTTCGA
387 TTGTGCATGCCAACAAAAATACAAGGATCACG-TCTACCAAGTTTGGGGCCAAAACTCC-TTCCA
* * * *
19993639 AAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAGAGAAAACGAGTCG
450 AAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
19993704 TCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
19993769 TGCATTGGCAGGCAAAAATATGAA-TTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
19993833 TGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACACCCGCCCGCCCGCTCGTTTCGTCGGT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGT--CC-C-CGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * ** * * ** *
19993898 TGGCTGAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGATCAAATTGAGGGTTGCAGCAGCAG
706 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAG
* * * *** * * * ** * * *
19993963 CATCGACAGGACGTAGAGGGGGACCCAACCTATCCTCGACTTGCATATCTCGCCCCTCTGGCCTG
771 GATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGG
* * * * *
19994028 TTGCGCCCCCGCACGGTCGTTTCGTAGGTTGACTTAG
836 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
19994065 GCATACGAAGTTCATTCCCAGTCTAAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGA
19994093 ATACAGAGTT
Statistics
Matches: 11849, Mismatches: 1867, Indels: 1417
0.78 0.12 0.09
Matches are distributed among these distances:
849 57 0.00
850 1 0.00
852 3 0.00
853 1 0.00
854 171 0.01
855 4 0.00
856 56 0.00
857 32 0.00
858 63 0.01
859 161 0.01
860 279 0.02
861 3 0.00
862 1 0.00
863 1 0.00
864 5 0.00
865 2 0.00
867 1 0.00
868 145 0.01
869 6 0.00
870 144 0.01
871 471 0.04
872 118 0.01
873 1 0.00
874 1 0.00
875 177 0.01
876 114 0.01
877 210 0.02
878 1132 0.10
879 451 0.04
880 228 0.02
881 348 0.03
882 589 0.05
883 66 0.01
884 6 0.00
885 1 0.00
886 179 0.02
887 7 0.00
888 7 0.00
889 28 0.00
890 15 0.00
891 630 0.05
892 60 0.01
893 216 0.02
894 305 0.03
895 1016 0.09
896 391 0.03
897 227 0.02
898 624 0.05
899 236 0.02
900 23 0.00
901 203 0.02
902 719 0.06
903 460 0.04
904 3 0.00
906 6 0.00
907 2 0.00
908 3 0.00
909 16 0.00
910 312 0.03
911 6 0.00
912 59 0.00
914 3 0.00
915 5 0.00
916 3 0.00
918 2 0.00
919 3 0.00
920 4 0.00
921 1 0.00
923 5 0.00
924 1 0.00
925 5 0.00
926 3 0.00
927 3 0.00
928 3 0.00
929 5 0.00
930 2 0.00
931 2 0.00
934 2 0.00
935 2 0.00
936 1 0.00
937 3 0.00
938 2 0.00
939 1 0.00
940 9 0.00
941 3 0.00
943 4 0.00
944 5 0.00
945 1 0.00
946 2 0.00
947 3 0.00
948 6 0.00
949 2 0.00
950 3 0.00
951 6 0.00
952 15 0.00
953 18 0.00
954 30 0.00
955 21 0.00
956 7 0.00
957 20 0.00
958 2 0.00
959 3 0.00
960 5 0.00
961 3 0.00
962 2 0.00
963 2 0.00
964 8 0.00
965 4 0.00
966 16 0.00
967 5 0.00
968 6 0.00
969 15 0.00
970 1 0.00
971 6 0.00
972 8 0.00
973 9 0.00
975 1 0.00
976 1 0.00
977 8 0.00
978 7 0.00
979 8 0.00
980 10 0.00
981 6 0.00
982 10 0.00
983 4 0.00
984 7 0.00
985 11 0.00
986 17 0.00
987 19 0.00
988 9 0.00
989 6 0.00
990 4 0.00
991 9 0.00
992 4 0.00
993 10 0.00
994 7 0.00
995 5 0.00
996 5 0.00
997 8 0.00
998 12 0.00
999 1 0.00
1000 4 0.00
1001 1 0.00
1002 9 0.00
1003 10 0.00
1004 24 0.00
1005 20 0.00
1006 15 0.00
1007 4 0.00
1008 2 0.00
1009 6 0.00
1010 14 0.00
1011 7 0.00
1012 5 0.00
1013 4 0.00
1014 8 0.00
1015 5 0.00
1016 4 0.00
1017 3 0.00
1018 2 0.00
1019 1 0.00
1021 8 0.00
1022 19 0.00
1023 10 0.00
1024 428 0.04
1025 483 0.04
1026 459 0.04
1027 453 0.04
1028 451 0.04
1029 422 0.04
1030 525 0.04
1031 306 0.03
1032 353 0.03
1033 364 0.03
1034 340 0.03
1035 228 0.02
1036 384 0.03
1037 290 0.02
1038 389 0.03
1039 246 0.02
1040 293 0.02
1041 307 0.03
1042 276 0.02
1043 221 0.02
1044 305 0.03
1045 180 0.02
1046 224 0.02
1047 386 0.03
1048 397 0.03
1049 140 0.01
1050 110 0.01
1051 163 0.01
1052 186 0.02
1053 296 0.02
1054 135 0.01
1055 133 0.01
1056 78 0.01
1057 260 0.02
1058 133 0.01
1059 224 0.02
1060 247 0.02
1061 326 0.03
1062 143 0.01
1063 69 0.01
1064 137 0.01
1065 115 0.01
1066 101 0.01
1067 84 0.01
1068 127 0.01
1069 133 0.01
1070 83 0.01
1071 122 0.01
1072 183 0.02
1073 175 0.01
1074 70 0.01
1075 150 0.01
1076 50 0.00
1077 62 0.01
1078 47 0.00
1079 83 0.01
1080 28 0.00
1081 25 0.00
1082 15 0.00
1083 229 0.02
1084 52 0.00
1085 90 0.01
1086 363 0.03
1087 80 0.01
1088 11 0.00
1089 3 0.00
1090 11 0.00
1091 4 0.00
1092 1 0.00
1093 14 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (872 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGTACCGAGGGTTGCGGCAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAG
AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAT
TTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGC
ACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:19985021 original size:25 final size:26
Alignment explanation
Indices: 19984987--19985036 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
19984977 TTGACTTAGG
19984987 CATACGGAGTTCAATCC-AGTCTAAA
1 CATACGGAGTTCAATCCAAGTCTAAA
*
19985012 CATACGGAGTTCATTCCAAGTCTAA
1 CATACGGAGTTCAATCCAAGTCTAA
19985037 GATCAAACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (26 bp):
CATACGGAGTTCAATCCAAGTCTAAA
Found at i:19985149 original size:184 final size:185
Alignment explanation
Indices: 19984828--19985240 Score: 562
Period size: 184 Copynumber: 2.2 Consensus size: 185
19984818 TTAGCTTAGG
** * *
19984828 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGCTGCAGAAGCAGGATCGATAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGCTGCAGAAGCAGGATCAACAG
* * * * * *
19984893 CACGCAGAGGGTGACCCGGTCAATCCTCGACTTGCGCATCCTGCCACTCTGGCTGGCTGAGCGCC
66 CACGCAGAGGGGGACCCGATCAATCCCCGACTTGCGCATCCTGCCACTCTGGCCGACTGAACGCC
*
19984958 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAAT-CCAGTCTAAA
131 AGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAAA
* * *
19985012 CATACGGAGTTCATTCCAAGTCTAAGATCAAACC-GAACCGAGGGTTGCAGCAGCAGGATCAACA
1 CATACGGAGTTCATTCCCAGTCTAAGATCAAACCAG-ACCGAGGGCTGCAGAAGCAGGATCAACA
* * * * * *
19985076 GCATGCAGAGGGGGACTCGATCGATCCCCGGCTTGCGCAT-CTCGCCCCTTTGGCCGACTGAACG
65 GCACGCAGAGGGGGACCCGATCAATCCCCGACTTGCGCATCCT-GCCACTCTGGCCGACTGAACG
* * *
19985140 CCAGCACGCTCGTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAAG
129 CCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAAA
* *
19985197 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGG
19985241 TTACGGCAAC
Statistics
Matches: 199, Mismatches: 26, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
183 3 0.02
184 147 0.74
185 48 0.24
186 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (185 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGCTGCAGAAGCAGGATCAACAG
CACGCAGAGGGGGACCCGATCAATCCCCGACTTGCGCATCCTGCCACTCTGGCCGACTGAACGCC
AGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAAA
Found at i:19985209 original size:26 final size:26
Alignment explanation
Indices: 19985173--19985222 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
19985163 GACTTAGGCT
19985173 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
19985199 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
19985223 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:19987882 original size:26 final size:26
Alignment explanation
Indices: 19987848--19987898 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19987838 TTAACTTAGG
*
19987848 CATACGGAGTTCATTCCTAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
*
19987874 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
19987899 GATCGGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:19988787 original size:26 final size:26
Alignment explanation
Indices: 19988751--19988801 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19988741 TTGACTTAGG
* *
19988751 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGAAGTTCATTCACAGTCTAAA
19988777 CATACGAAGTTCATTCACAGTCTAA
1 CATACGAAGTTCATTCACAGTCTAA
19988802 GATTGGACCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATTCACAGTCTAAA
Found at i:19989277 original size:891 final size:894
Alignment explanation
Indices: 19986976--19994144 Score: 8785
Period size: 895 Copynumber: 8.1 Consensus size: 894
19986966 GTTGACTTAG
* * * * * * *
19986976 GCATACGGAGTTCATTCCCTGTTTAAGATCAGACCAGACCGAGTGTTGCGGCAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * *
19987041 CTCGAGCATGTGCTGCTGCCACAATTTTGTTCGTCGGGGTACCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA---TC---GC-TCGTC-GAGA
* * * * * *
19987106 ACCTAACCAGCGGTATTGGGGTTCTGGCGATCGGGGGGG-CAGGGGGTGTGCGCACATGATGTGC
123 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGC
*
19987170 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
188 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
19987235 CCCCATTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATG
253 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
19987300 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTGTTTTT-
318 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTG
* *
19987364 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAA
382 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** *
19987429 GTTTTAAAAAATCTTAAACCGTAAAAAGTTTCAAAAATCATGACAAAA-A-AAAACGAGTCGTCT
447 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGA-AAAATAGAAAACGAGTCGTCT
*
19987492 TGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
511 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
19987557 ATTGGCACAT--AGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCACGGCTT
576 ATTGGC-C-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
19987620 GCGCATCCCGTCTCTCTGGTCGGTGTAGTGCCCG--C-CCGCCCGGCCGCTCGTTTCATCGGTTG
639 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTG
* *
19987682 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGATCGATGGTTGCGGTAGCAGGA
704 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGATCGAGGGTTGCGGCAGCAGGA
* * ** * * *
19987747 TCGATAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCACCCCTCTGACCGGCT
769 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
19987812 GAGCGCCCGCACACTCGTTTCATAGGTTAACTTAGGCATACGGAGTTCATTCCTAGTCTAA
834 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19987873 CCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* *
19987938 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCCGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA---TC---GC-TCG-TCGAGA
* * * *
19988003 ACCTGACCGGCGGCATTGGAGTTCCGATGAT-TGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
123 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTC-GGGGGGTGTGCGCACATGATGTG
* * *
19988067 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAGCCTCAAGAACTCAC
187 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19988132 AACCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTGAAAT
252 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19988197 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAGTTTTTTG
317 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * * * *
19988262 TGCAAGCCAACAAAAATACAAGTATCATGTCTACGAACTTCGAAGG-CAAAACCCCTTCCAAAAA
382 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGGCCAAAACTCCTTCCGAAAA
* * *
19988326 AATTTTAAACATTAC-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
446 AATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
19988390 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
510 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19988455 CATTGGCCTACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTA
575 CATTGGCCTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
19988520 CCCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGTCTGCCCGCCCGCTCGTTTCGTCGGTTG
640 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * *
19988585 GCTTAGGCATGCGGAGTTCATTCGCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGA
704 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGATCGAGGGTTGCGGCAGCAGGA
** * *** * * ** * *
19988650 TCGACAGCACAAAGAGGGGTACCCTTTCGATCCCCAGCTTGTGCATCCCATCCCTCTGGCCGACC
769 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
**
19988715 GAGCATCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
19988776 ACATACGAAGTTCATTCACAGTCTAAGATTGGACCTGATCGAGGGTTGCGACAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
19988841 CTCAGGCATGTGTTGGTGCCACTTTTTTCTTCGTCAGGGCACCATCG-TC-T-GAGAACCTGACC
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTCGTCGAGAACCTGACC
* *
19988903 GGCGGTATTGAGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGAT-TGCGATGGGTG
131 GGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
19988967 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
19989032 AAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * * *
19989097 TTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTTGTTTAATATTTTTGTGCATGCCA
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
19989162 ACAAAAATACAAGGATCACATTTACCAAGTTTGGGGCCAAAATTCCTTCTGAAAAAATTTTAAAA
391 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
** *
19989227 AATCTCGAACCACAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
456 AATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * * *
19989292 CTTCATGTGAAAGCTTAAGGGACCATTGTCTGAATTTACAAGCCATAAAAATGCCATTGGCAC-A
521 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-CTG
* * **
19989356 CAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGACTTATGCATCCCGT
585 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * *
19989421 CTCTCTAGCCGGCGTAGTGCCTGCCTGCCCGCCCGCCCGTTCATTTCATCGGTTGGCTTAGGCAT
650 CTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * ** *
19989486 ACAGAGTTCATTCCTAGTCTAAGATCAGA-CCAAACTGAGGGTTGCGGCAGCAGGATC-ACCAGC
714 ACGGAGTTCATTCCCAGTCTAAGATTAGATCGGATC-GAGGGTTGCGGCAGCAGGATCGA-CAGC
* * * * * *
19989549 ACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCTCATCCCGCCCCTCTAGCCAGATGAGCACCC
777 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * *
19989614 GTACACTCGTTTCATGGGTTGACTT----AT-----G--CA-T---A--C---
842 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
19989647 G---A---AG-T--TT---A---T----TC---CCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* ** **
19989690 CCCGGGCATGTGCTGGTGCCGTATTTTTCTTTATCGGGGCACCATCACCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT---C---GC-TCGTC-GAGA
*
19989755 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGTCGGGGGGTGTGTGCACATGATGTGC
123 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGC
* *
19989819 GATGGGTGCTGGTACTTGGCCATTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACA
188 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
** *
19989884 CCCTTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATG
253 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19989949 GGGACTCTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
318 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** * *
19990014 GCATGCCAACAAAAATACAAGGATCACATCTAATAAGTTTAGTGCCAAAACTCCTTCCGAAAAAA
383 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
19990079 -TTTAAAAACTCGT-GAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
448 TTTTAAAAAATC-TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
19990142 GCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
512 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
19990207 TTGGCATGCAGAAATA-GAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACAGCTTGCG
577 TTGGCCTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *** * * * * *
19990271 CAACCTACCTCTCTGGCCGACGCAGTGCCCG--C-CCGTCCGCCCGCTCGTTTCGTCGATCGGCT
642 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * *
19990333 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGAACCAAGGGTTGCGGCAGCAGGATTG
707 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGATCGAGGGTTGCGGCAGCAGGATCG
* * * *
19990398 GCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAG
772 ACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
19990463 CGCCTGCATGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
19990521 GCATACGGAGTTCATTCCCAGCCTAAGATCGAACCAGACCAAGGGTTGTGACAGCCCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* *
19990586 CTCGGGAATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA---TC---GC-TCGTC-GAGA
* * *
19990651 ACCTGATCGGCGGCATTGGGGTTCCTG-CGATCGAGGGGGCCGGGAGGGTGTGCGCACATGATGT
123 ACCTGACCGGCGGCATTGGGGTTCC-GACGATCGGGGGGGTCGGG-GGGTGTGCGCACATGATGT
* * * *
19990715 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCCCATCAAACCAT-GATAACTC
186 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTC
*
19990779 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTGCCAGTAGCCATTAAAGTGTCTGAA
250 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
19990844 ATGGCGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
315 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
19990909 T-TTCTTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACGCCTTCCAAAA
380 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
19990973 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTC
445 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
19991038 TTACCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCAATAAAAATGG
510 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19991103 CATTGGCATGCAGAAATATGAAGATGTGCCCAAATCCACCTACCACCCTATCGATCCACGGCTTG
575 CATTGGCCTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * *
19991168 CAAATCTCGTCACTCTGGCCGGCGTAGT----G--C-CCGCCCGCCCACTCGTTTCGTCGGTTGG
640 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
19991226 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CAGAGGGTTGCAGTAGCAGGA
705 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGATC-GAGGGTTGCGGCAGCAGGA
* * * * *
19991290 TTGGCAGCACACAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACT
769 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
19991355 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19991416 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
19991481 CAT-GGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGAGGCACCATCACCTGAGCATCGTCGAAG
66 C-TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT---C---GC-TCGTCG-AG
* * * *
19991545 AACCTGACCAGCGGCATTGGGGTTCCGACAATC-GGGGGGTCGGGGGGTGCGTGCACATGATGTG
122 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTG
* * * * *
19991609 CGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCATATCCCTAATCAAATCTTGAGAACTCAC
187 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19991674 ACCCCCTAAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
252 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
19991739 GGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAATTTTTAGCTGATTTTTTTTA
317 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
19991804 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAA
382 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
19991869 ACTTTTAAAAAATCTCGAACTGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
447 A-TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
19991934 TGCCATGAATCTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGC
511 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
19991999 ATTGGCAC-ACAGAAATATGAATATGTGCCTAAACCCACCAACCACCCTATTGATCCACAGCTTG
576 ATTGGC-CTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * * * *
19992063 CGCATCCCATCTCTCTGGCTGGC--A-T---CG-TGGTCGCCCGCTCGCT-GTTTTCATCGATTG
640 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCG-TTTCGTCGGTTG
* * * * * *
19992120 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGCAGCAAGA
704 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGATCGAGGGTTGCGGCAGCAGGA
* * * ** **
19992185 TCGTCAGCACACAGAGGGGGACCTGGTCGATCCCCGGCTTGCGCATCCCATCCCTCTGGCCGGCT
769 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
19992250 GAGCG-TCGACACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 GAGCGCCCG-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
19992311 GCGTATGGAGTTCATTCCCAATCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
19992376 CTCGGGCATGTGCTGGTGCCACATTTTTCTTGGCCGGAGCACCATCG-TCAGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTC---G--T---C-GAG
* * * *
19992440 AACCTGACCGGTGGCAGTGGGGTTCCGACGATCGGGGGGGTCGAGGGGTGTGCGCACATGATGTA
122 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTG
*
19992505 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
187 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19992570 ACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
252 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19992635 GGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTG
317 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
19992700 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAA
382 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
19992765 ATTTTCAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
447 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
19992830 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
512 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
19992895 ATGG-CTCGCAAAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATGCACGGCTTGC
577 TTGGCCT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
19992959 GTATCTCGTCTCTCTGGTCGGTGTAGTGCCCGCTCAC-CCGCCCGCTCGATCGTTTCGTCGGTTA
641 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-C-CGCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * * * * *
19993023 GCTTAGGCATACGGAGTTTATTCCCAGTCTAACATCAGACCAGATTGAGGGTTACGGTAGCAAGA
704 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGATCGAGGGTTGCGGCAGCAGGA
* * * ** * *
19993088 TCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCAC-TTCCTTTGGCCGGCC
769 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
19993152 GAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
19993213 G-AT-C-G-G---------A--C------C--A---GACCGAGGGTTGC-AGCAGCATATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATGCTGG
* * * * * *
19993251 GCTCAGGCATGCGCTGGTGCCGCATTCTTCTTCG-CAAGGGCACCATCGTCGGAGCATCGCCGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCA---TC---GC-TCGTC-GA
* * * * **
19993315 GAACCTGACCGGTGGCTTTTGGGTTTCGACGATCGGGGGCATCGGGGGGGGTGTGCGCACATGAT
121 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTC--GGGGGGTGTGCGCACATGAT
*
19993380 GTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
184 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
19993445 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAA
249 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
19993510 AATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTT
314 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
19993575 TTGTGCATGCCAACAAAAATACAAGGATCA-GTTCTACCAAGTTTGGGGCCAAAAATCCTTTCGA
379 TTGTGCATGCCAACAAAAATACAAGGATCACG-TCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* *
19993639 AAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAGAGAAAACGAGTCG
443 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
19993704 TCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAAT
508 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* ** * *
19993769 TGCATTGGCAGGCAAAAATATGAA-TTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
573 GGCATTGGCCTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
*
19993833 TGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACAC-CCGCCCGCCCGCTCGTTTCGTCGG
638 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-C-CGCCGCCCGCCCGCTCGTTTCGTCGG
* * * ** * *
19993897 TTGGCTGAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGATCAAATTGAGGGTTGCAGCAGCA
701 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGATCGAGGGTTGCGGCAGCA
* * * * * * * ** * *
19993962 GCATCGACAGGACGTAGAGGGGGACCCAACCTATCCTCGACTTGCATATCTCGCCCCTCTGGCCT
766 GGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * *
19994027 GTTGCGCCCCCGCACGGTCGTTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
831 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
19994091 GAATACAGAGTTCATTCCCAATCTAAGATTGAACCGGATCGAGGGTTACGACAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAG
19994145 TAGGATCGGC
Statistics
Matches: 5453, Mismatches: 648, Indels: 335
0.85 0.10 0.05
Matches are distributed among these distances:
849 65 0.01
852 2 0.00
854 155 0.03
855 5 0.00
856 1 0.00
857 2 0.00
858 68 0.01
859 157 0.03
860 277 0.05
862 2 0.00
863 1 0.00
864 1 0.00
865 4 0.00
866 1 0.00
868 1 0.00
869 1 0.00
871 1 0.00
874 2 0.00
875 1 0.00
876 102 0.02
877 187 0.03
878 467 0.09
879 6 0.00
880 5 0.00
881 3 0.00
882 3 0.00
883 2 0.00
884 2 0.00
886 1 0.00
887 5 0.00
889 3 0.00
890 8 0.00
891 591 0.11
892 57 0.01
893 210 0.04
894 76 0.01
895 1024 0.19
896 396 0.07
897 215 0.04
898 621 0.11
899 229 0.04
900 2 0.00
901 5 0.00
902 67 0.01
903 403 0.07
904 15 0.00
905 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTCGTCGAGAACCTGACC
GGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCCTGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATTAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19990524 original size:26 final size:26
Alignment explanation
Indices: 19990495--19990547 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19990485 GTTAACTTAG
*
19990495 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
19990521 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
19990547 G
1 G
19990548 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:19991426 original size:26 final size:26
Alignment explanation
Indices: 19991390--19991442 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19991380 GTTGACTTAG
19991390 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19991416 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19991442 G
1 G
19991443 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19995169 original size:26 final size:25
Alignment explanation
Indices: 19995131--19995180 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
19995121 TGACTTAGGT
*
19995131 ATACGAGTTCATTCCCAGTCTAAGC
1 ATACGAGCTCATTCCCAGTCTAAGC
*
19995156 ATACGGAGCTCATTCCTAGTCTAAG
1 ATAC-GAGCTCATTCCCAGTCTAAG
19995181 ATCGGATTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (25 bp):
ATACGAGCTCATTCCCAGTCTAAGC
Found at i:19996045 original size:26 final size:26
Alignment explanation
Indices: 19996009--19996061 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19995999 GTTGACTTAG
*
19996009 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19996035 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19996061 G
1 G
19996062 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19996698 original size:889 final size:887
Alignment explanation
Indices: 19994250--19997165 Score: 3695
Period size: 889 Copynumber: 3.3 Consensus size: 887
19994240 GTTGACTTAG
* * * * *
19994250 GCATACGGAGTTCATTCCCACTCTAAGATCGGATCGGACCGAGGGTTACGATAGCACATGCTGAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
19994315 CTCAGGCATGTGCTGGGGCCACATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCG-CTGGAG
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGAG
* * *
19994379 AACCTGACCGGCGGCATTTGGGTTCCGACGATCGGGGGGGCCAGGGGGTGAGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG---GGGGG-GTGTGCGCACATGATG
* *
19994444 TGCGATGGGTGCTGGTACTTGGCCGTTATTTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
19994509 ACACCCCCTTAAAGAGCATTTGAAATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
19994574 ATTGGGACATTTTTTTCAAATGGTCAAAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
19994639 TGTGCGTGCCAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAACTCCTTCCGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCC-AAA
* ** * *
19994704 AAAGTTTAAAAAATTTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
450 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
19994769 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGGCATAAAAATGT
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
19994834 CATTGCCACGTAGAAATAGGAAGATGTGCTTAAACCCACCTACCACCCTATCGATGCACGACTTG
580 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * * * * *
19994899 TGCATCCCGTCTCTCTGGCCGGCGTAGAGCCCACCCGCCCGCCCGCCCGCTTGTTTTGTTGGTTG
645 CGCATCCCGTCTCTCT----GGC-T-G-G--CA-TAG--TGCCCGCCCACTCGTTTCGTCGGTTG
* * * *** *
19994964 GCTTAGGCATACGGAGTTCA-TCCCTGGTCTAAGATTGGA-CTGGATCGAGGGTTACAGTAGAAG
698 GCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATTGGATC-AGA-CGAAGGTTGTGGTAGCAG
** * * * *
19995027 GATCGATAGCACGCAAAGGGGGACCTGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-G
760 GATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAG
** * * *
19995091 ACAAAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGTATAC-GAGTTCATTCCCAGTCTAA
825 -CTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *** *
19995154 GCATACGGAGCTCATTCCTAGTCTAAGATCGGATTAGACTGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* **
19995219 CTCGGGCATGTTTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * ** *
19995284 ACCTGACCGACGACATTGGGGTTCCAGCGATC------GAAGGGGTGTGCGCACATGATGTACGA
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGGGGGGGTGTGCGCACATGATGTGCGA
* * * * * * * **
19995343 TGGGTGCTGGTACATGGCCATTGTATTTGCCCCCTTTCCCTTATCAAACCTTGAGAACTCATGCC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* **
19995408 CCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGTAATTAAAGTGTCTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* ** *
19995473 GACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAAATGAATTTTTTTCTGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * *
19995538 ATGCCAA-ATAAATTGCAAGGATCACGTCTACC-AGTTTTGGGCCAAAACTCCTTCTGAAAAAAT
391 ATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTC-CAAAAAAT
* ** * * * *
19995601 TTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAGACGAATCGTCTTGC
454 TTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
19995666 CATGAAACTTCCCGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * * *
19995731 GGCATGCAGAAATATGAAGCTGTGCCTAAATCCACCGACCACCCTATCGATCCATGCCTTGCGCA
584 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
19995796 TCCCGTCTCTCTGGCTGGCATAGTGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
649 TCCCGTCTCTCTGGCTGGCATAGTGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * *
19995861 TTCATTCCCAGTCTAAGATTAGATCAAACTGAAGGTTGTGGTAGTAGGATTGGCAGCACGTAGAA
714 TTCATTCCCAGTCTAAGATTGGATCAGAC-GAAGGTTGTGGTAGCAGGATCGGCAGCACGTAGAG
* * * * * * * *
19995926 GGGGACTCGACCGAT-CCCAGCTTGTGCATCTCGTCCCTCTTGCCGGCTCAGCGCCCGCACGTTC
778 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGTTC
19995990 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19996035 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
** * *
19996100 CTTGGGCATGTGCTGATGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* **
19996165 ACCTGACTGGCGGTGTTGGGGTTCCGGCGATCGGGGGGTGGGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG-GGGGGGGTGTGCGCACATGATGTGCG
*
19996230 ATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * * * *
19996295 CCCTTTAAAGAGCATTTGAGATTTTATAGGTTCGCTGCTAGTAGCCGTTAAAGTGTTTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
19996360 GGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTA
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
19996425 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAATAAT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAA-AAT
* * * * *
19996490 TTTAAAAAATCCTTAACCGTAAAAAGTTTTAAAAATCATCAAAAATAAAAAACAAGTCATCTTGC
454 TTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
19996555 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
19996620 GGCATGCGGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCTTGCGCA
584 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * ** *
19996685 TCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCTGCTCGTTTCGTCGGTTGACTTAGGCATACGGAG
649 TCCCGTCTCTCTGGCTGGCATAGTGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* ** * * * * *
19996750 TTTATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAG
714 TTCATTCCCAGTCTAAGATTGGATCAGA-CGAAGGTTGTGGTAGCAGGATCGGCAGCACGTAGAG
* * * * *
19996815 GGGGACCCAACCGATCCCCCGCTTGCGCATCCCGCCCCTCTGGCCCGTTGAGCACCCGCACGTTC
778 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGTTC
* * *
19996880 GTTTTGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
843 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19996925 GCATATGGAGTTCATTCCCAGTCGAAGATCAGACCGGACCGAGGGTTGCGACAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
** * * * *
19996990 CTTGGGCATATGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
19997055 ACCTGATCGGTGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTTATGCGCACATGAT-TG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG--GGGGGG-TGTGCGCACATGATGTG
* * *
19997119 CGATGGGTGCTGGTA-TGTGGCCCTTTTACTGGCCCCCTATACCTCAT
193 CGATGGGTGCTGGTACT-TGGCCCTTATATTGGCCCCCTATCCCTCAT
19997166 AAAAAATCGT
Statistics
Matches: 1748, Mismatches: 240, Indels: 61
0.85 0.12 0.03
Matches are distributed among these distances:
880 63 0.04
881 253 0.14
882 5 0.00
883 1 0.00
884 2 0.00
886 1 0.00
887 1 0.00
888 226 0.13
889 326 0.19
890 234 0.13
891 49 0.03
892 13 0.01
893 211 0.12
894 218 0.12
895 3 0.00
898 1 0.00
904 140 0.08
905 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAATTT
TAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCTGGCATAGTGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATTGGATCAGACGAAGGTTGTGGTAGCAGGATCGGCAGCACGTAGAGGGG
GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGTTCGTT
TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19997369 original size:8 final size:8
Alignment explanation
Indices: 19997356--19997385 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
19997346 CCGGCGTAGT
19997356 GCCTGCCC
1 GCCTGCCC
19997364 GCCTGCCC
1 GCCTGCCC
*
19997372 GCCCGCCC
1 GCCTGCCC
19997380 GCCTGC
1 GCCTGC
19997386 TCGTTTCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.00, C:0.63, G:0.27, T:0.10
Consensus pattern (8 bp):
GCCTGCCC
Found at i:19997583 original size:26 final size:26
Alignment explanation
Indices: 19997553--19997605 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19997543 GTTGACTTAG
19997553 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
* *
19997579 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
19997605 G
1 G
19997606 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:19997767 original size:26 final size:26
Alignment explanation
Indices: 19997738--19997790 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19997728 GTTGACTTAG
19997738 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19997764 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19997790 G
1 G
19997791 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19999581 original size:26 final size:26
Alignment explanation
Indices: 19999545--19999597 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19999535 GTTGACTTAG
19999545 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19999571 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19999597 G
1 G
19999598 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19999947 original size:901 final size:896
Alignment explanation
Indices: 19997579--20000475 Score: 3805
Period size: 901 Copynumber: 3.2 Consensus size: 896
19997569 CACAGTCTAA
* * *
19997579 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTACGACAGTAAGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACG-CAGTAAGATCGGCA
* *
19997644 GCACGCAGAGGGGGACCCA-ATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
65 GCACGTAGAGGGGGA-CCAGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCG
* * * *
19997708 CCCGCAAGCTCGTTCCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAA
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* **
19997773 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCACATGCTGGGCTCAGGCAT
194 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCAT
** ** * * * *
19997838 GTGCTGGTGTAGCATTTTTCTTCACCGAGGCACCATCGTCAGAGCATCGTCGGAGAATCTTACCG
259 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
* * *
19997903 GCGGCATTAGGGTTCCGGCGATC----GG-GA--GGGTGTGCGCACATGATGTGTGATGGGTGCT
324 ACGGCATTAGGGTTTCGGCGATCGGGGGGCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
19997961 GGTACTTGGCCCTTATATT-GTCCCCTATCCCTCATCAAACCCCGAGAACTCACACCCCCTTATA
389 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
19998025 GAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGATATTTT
454 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTT
* * *
19998090 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAG-TTGAAATTTTTTATGCATGCCAA
519 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTT-AATTTTTTTGTGCATGCCAA
** * *
19998154 CAAAAATACAAGGATCACGTCTAATAAGTTTGGGGCCAAAACTACTTCCAAAAAAATTTTAAAAA
583 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
*
19998219 ATCCTGAACCACAAAAAGTTTTGAAAATCACT-AAAAATAGAAAACGAGTCGTCTTGCCATGAAA
648 ATCCTGAACCATAAAAAGTTTTGAAAATC-CTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
19998283 CTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT
712 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT
*
19998348 AGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAACCCGTC
777 AGAAATATGAAGATGT-CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
19998413 TCTCTGGTCGACGTAGTGCCCGCTGGCCTGCCCGCCCACCTGCCCGCTCGCTCGTT-TCGTCAGT
841 TCTCTGGCCGGCATAGTGCCC-C---CCTGCCCGCCCA-CT---CG-T---T--TTATCG---GT
*
19998477 TGCCTTAG
889 TGGCTTAG
** ** * * *
19998485 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATTGAGGGTTGTGGTAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTT-ACGCAGTAAGATCGGCA
* * * * * * *
19998550 GCACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGTCCCTTTGGCTAGTTGAGTGC
65 GCACGTAGAGGGGGACCAGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGC
* * *
19998615 CCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTA-TCTAAGCATATGGA
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCATACGGA
* * * * *
19998679 GTTCATTCCCAGTCTAAGATCAGACCGAACCAAAGGTTGCGACAGCACATGCTGGGCTCAGCCAT
194 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCAT
* * * * *
19998744 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGC-CCATCGCCGGAGCATCGCCGAAGAACTTGA-CT
259 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
* * *
19998807 AGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
324 A-CGGCATTAGGGTTTCGGCGATC-GGGGGG-CGAGGGGGTGTGCGCACATGATGTGCGATGGGT
19998872 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-CCTCCCT
386 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCCT
* * *
19998936 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGCAACGGTGACA
450 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
19999001 CTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCATG
515 -TTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCATG
* *
19999066 CCAACAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
579 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* *
19999131 AAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
644 AAAAATCCTGAACCATAAAAAGTTTTGAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
19999196 AAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
709 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* ** * *
19999261 CGTAGAAATATGAAGATGTACCTTAAGTCCACCTACCACTCTATCGATCCACGACTTGCGCATCC
774 CATAGAAATATGAAGATGT-CC-TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
*
19999326 CATCTCTCTGGCCGGCATAGTGCCCACCC-GCCCGCCCACTCGTTTTATCGGTTGGCTTAG
837 CGTCTCTCTGGCCGGCATAGTGCCC-CCCTGCCCGCCCACTCGTTTTATCGGTTGGCTTAG
* * * * * * *
19999386 GCATACAGAGCTCATTCCTAGTCTAAGATTGGACCGGACCAAGGTTTACAGCAGCAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTAC-GCAGTAAGATCGGCA
** * * * *
19999451 TTACGTAGAGGGGGACTAGGTCGATCCCTGGCTTTCGCATCCCGCCCCTCTGGCCAGCTGAGCGC
65 GCACGTAGAGGGGGACCAGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGC
* *
19999516 CCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * ** *
19999581 TTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGTGGCACATGCTGGACTCAGGCATG
195 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATG
* *
19999646 TGCTGGTGCCGCATTTTTTTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGA
260 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGA
*
19999711 CGGCATTAGGGTTTCGGTGATCAGGGGGGTCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
325 CGGCATTAGGGTTTCGGCGATC-GGGGGG-CGAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
19999776 TGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTGACACCCCCTTAA
388 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
19999841 AGTGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTT
453 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTT
* * *
19999906 TTTTCCAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCTAA
518 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCATGCCAA
* * * *
19999971 AAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAACAAATTTTAACAA
583 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
20000036 ATCCTGAACCATAAATAGTTTTAAAAATCCTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAAC
648 ATCCTGAACCATAAAAAGTTTTGAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
** *
20000101 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTGTTGGCACACA
713 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATA
*
20000166 GAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
778 GAAATATGAAGATGT-CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * ** * * *
20000231 CACTGGCCGGCATAGTGCTCGCCCATCTGCCCGCCCGCTCGTTCCATCGATTGGATTCG
842 CTCTGGCCGGCATAGTGC-C-CCC--CTGCCCGCCCACTCGTTTTATCGGTTGGCTTAG
* ** * * * * * **
20000290 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTAC-GCAGTAAGATCGGCA
* * * * * * * *
20000355 GCACGAAGAGGGAGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTAGTCAGC-GTAGTG
65 GCACGTAGAGGGGGACCAGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTG-AGCG
* * * * * * * * * *
20000419 CCTGCCCACTTGTTTTGTCGATTGGCTTAGGCAAACAGAGTTCATTCCCAGTCTAAG
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
20000476 ATCAGACCAG
Statistics
Matches: 1740, Mismatches: 220, Indels: 64
0.86 0.11 0.03
Matches are distributed among these distances:
900 60 0.03
901 515 0.30
902 201 0.12
903 8 0.00
904 177 0.10
905 45 0.03
906 246 0.14
907 2 0.00
908 1 0.00
909 2 0.00
910 2 0.00
912 3 0.00
913 9 0.01
914 53 0.03
915 95 0.05
916 260 0.15
917 61 0.04
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGCAGTAAGATCGGCAG
CACGTAGAGGGGGACCAGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGT
GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGAC
GGCATTAGGGTTTCGGCGATCGGGGGGCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
CTGAACCATAAAAAGTTTTGAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAA
ATATGAAGATGTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGGCATAGTGCCCCCCTGCCCGCCCACTCGTTTTATCGGTTGGCTTAG
Found at i:20003031 original size:26 final size:26
Alignment explanation
Indices: 20002995--20003047 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20002985 CTGGTCTGAT
20002995 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20003021 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20003047 C
1 C
20003048 CTAAGTAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20004643 original size:26 final size:27
Alignment explanation
Indices: 20004603--20004660 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
20004593 CCGATCCGAT
20004603 CTTAGACTGGGAATGAAC-TCCATATG-
1 CTTAGACTGGGAATGAACGT-CATATGC
*
20004629 CTTAGACTGGTAATGAACGTCATATGC
1 CTTAGACTGGGAATGAACGTCATATGC
20004656 CTTAG
1 CTTAG
20004661 TCAACCCACG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 23 0.79
27 6 0.21
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACGTCATATGC
Found at i:20005528 original size:26 final size:26
Alignment explanation
Indices: 20005490--20005542 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20005480 CTGGTCTGAT
* *
20005490 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20005516 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20005542 C
1 C
20005543 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20005706 original size:26 final size:26
Alignment explanation
Indices: 20005677--20005727 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20005667 GATCCAATCA
20005677 TAGACCGAGAATGAACTCCGTATGCT
1 TAGACCGAGAATGAACTCCGTATGCT
* *
20005703 TAGACTGGGAATGAACTCCGTATGC
1 TAGACCGAGAATGAACTCCGTATGC
20005728 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (26 bp):
TAGACCGAGAATGAACTCCGTATGCT
Found at i:20005825 original size:185 final size:185
Alignment explanation
Indices: 20005500--20005886 Score: 506
Period size: 185 Copynumber: 2.1 Consensus size: 185
20005490 CTTAGACTGG
* *
20005500 GAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATCAG
1 GAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAACAG
** * * * ** *
20005565 CGTGCAGGCGCTCAGTCGGCTAAAGGGGCGAGATGCGCAAGCCGGGTTTCGGTCGGGTCCCTCTC
66 CGTGCAGGCGCTCAACCGACCAAACGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
* * * * *
20005630 TGCGTGCTACCGATCCTACTGCCTTAACACACAGTCCGATCCAATCATAGACCGA
131 TGCATGCTACCAATCCTACTACCGTAACACACAGTCCAATCCAATCATAGACCGA
*
20005685 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-AAAACGA
1 GAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAC-A
* * * * *
20005749 GCGTGCGGGCGCTCAACCGACCAGACGGGTGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCT
65 GCGTGCAGGCGCTCAACCGACCAAACGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCT
* * * * * * *
20005814 CTGCATGCTACCAATCGTACTACCGTAACCCTCAGTCCAATCCAATCTTCGACTGG
130 CTGCATGCTACCAATCCTACTACCGTAACACACAGTCCAATCCAATCATAGACCGA
20005870 GAATGAACTCCGTATGC
1 GAATGAACTCCGTATGC
20005887 CTAAGCCAAC
Statistics
Matches: 173, Mismatches: 28, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
184 4 0.02
185 169 0.98
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (185 bp):
GAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAACAG
CGTGCAGGCGCTCAACCGACCAAACGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
TGCATGCTACCAATCCTACTACCGTAACACACAGTCCAATCCAATCATAGACCGA
Found at i:20007476 original size:26 final size:26
Alignment explanation
Indices: 20007447--20007497 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20007437 CCGGTCCGAT
20007447 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
20007473 CTTAGACTGGGAATGAACTCTGTAT
1 CTTAGACTGGGAATAAACTCCGTAT
20007498 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:20008370 original size:26 final size:26
Alignment explanation
Indices: 20008341--20008390 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
20008331 TCGGTCCGAT
* *
20008341 CTTAGACTGGGAATGAGCTCCGTACG
1 CTTAGACTGGGAATCAACTCCGTACG
20008367 CTTAGACTGGGAATCAACTCCGTA
1 CTTAGACTGGGAATCAACTCCGTA
20008391 TGATTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTACG
Found at i:20008690 original size:894 final size:894
Alignment explanation
Indices: 20005685--20010004 Score: 5185
Period size: 894 Copynumber: 4.8 Consensus size: 894
20005675 CATAGACCGA
*
20005685 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAG
1 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * ** *
20005750 CGTGCGGGCGCTCAACCGACCAGACGGGTGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTC
66 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
* * * * * * * ** *
20005815 TGCATGCTACCAATCGTACTACCGTAACCCTC-AGTCCAATCCAATCTTCGACTGGGAATGAACT
131 TGCGTGCTGCCGATCCTGCTACCGCAACCCTCGA-TCCGATCTGATCTTAGACTGGGAATGAACT
* *
20005879 CCGTATGCCTAAGCCAACCGACGAAACGA----GC-G-A-GCGGGCGGGCACTATGTCGACCAAA
195 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGCAGGCGGGCGGGCACTACGTCGACCAGA
* * *
20005937 GAGATGGGATGCGCAAACCGTGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
260 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* ** * * *
20006002 CTATGTGCCAATGCCATTTTTATTGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGA
325 TTGCGTCCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
*
20006067 AGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAAA-TTTTTGCGGTTCGAG
390 AGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTT-AAAACTTTTTGCAGTTCGAG
*
20006131 ATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
454 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* ** * *
20006196 TGTTGGCATACACAAAAGGATTGAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAA
519 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * *
20006261 AAAAGTGTCCCCACTACAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCT
584 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* *
20006326 CTTTAAGGGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
649 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTAC
*
20006391 CAGCACCCATCGCACATCATGTGTGCACACCCCCACCTCTGGCCCCCCCGATCGTCGGAACCCAT
714 CAGCACCCATCGCACATCATGTGTGCACA--CCC-CCTC-GGCCCCCCCGATCGCCGGAACCC-T
** * *
20006456 ACCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCAATTGAAGAAAAATACGGCACC
774 AATGTCGGTCAGG-TCT---A-GATGCTCCGGCGATGGTGCCCAA-CGAAGAAAAATACGGCACC
*
20006521 AGCACATGCCCGAGCCCAACATGTGCTGCCGCAAC-C-C---TC-G---G----T---CT-G
833 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACACTCGGTTCGGTCCGATCTTAGACTGG
* * * *
20006566 G--T----T-TG-AT-CTTATACTGGGAATGAAATCCGTATGCCGAAGTCAACCCACGAAACGAG
1 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * *
20006622 CGTGCGGGCGCTCAGCCGGCCAGAGGGG-AGGGATGCGTAAGTCGGGGATCGGTCGAGCCCCCCT
66 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCA-GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCT
* ** * *
20006686 CTGCGTACTATCGATCCTGCTACCACAACCCTC-AGTCCGATGTGATCTTAGACTGGGAATGAAC
130 CTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGA-TCCGATCTGATCTTAGACTGGGAATGAAC
* * * * * ** ** * *
20006750 TCCGTATGCCTAAGCCAACTGATGAAATGAACGGGCGGGTGGGCGGGTAGGCACTAC-ACCAGCC
194 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-AGCAGGCGGGCGGGCACTACGTCGA-CC
*
20006814 AGAGAGACGTGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
257 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
20006879 TTTTTGCGTCCCAATGCCATTTTTATGGCTTGTAAATTCAT--AATAGTCCCTTAAGCCTTCACG
322 TTTTTGCGTCCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * * *
20006942 TGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTCAAACTTTTTGCGGTTCA
387 TGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCAGTTCG
* *
20007007 AGATTTTTTAAAATTTTTTCGGAAGGAGTTCTGGCCCCAAACTTGGTAGATGTGATCCTTGTATT
452 AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * * *
20007072 TTTGTTAGCATGCACAAAACAATTCAGCTAAAAACTCGATGTGTACAAGATTTTCTGACCATTTG
517 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
20007137 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATG
582 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
20007202 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGTGGCCAATATAACGGCCAAG
647 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGG-GGCCAATATAAGGGCCAAG
* * * * * *
20007266 TACCAGCAACAATTGCACATCA--TGTGCACACAACCC-CGGCCCCCCCGATCGTCGGAACCCCA
711 TACCAGCACCCATCGCACATCATGTGTGCACAC-CCCCTCGGCCCCCCCGATCGCCGGAACCCTA
* * *
20007328 ATGCCGCGGGTCAGGTTCTTCGGTGATGCTCCGGCGATGGTGCCCAGGCGAAGAAAAATACGGCA
775 ATG--TC-GGTCAGG-TC-T---AGATGCTCCGGCGATGGTGCCCA-ACGAAGAAAAATACGGCA
* * ** * * * *
20007393 CCAGCACATGCCTGAGCCCAGTATGTGCTATCGTAACCCTTGGTCCGGTCCGATCTTAGACTGG
831 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACACTCGGTTCGGTCCGATCTTAGACTGG
* * *
20007457 GAATAAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATACCTAAGTCAACCCACGAAACGAG
1 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * *
20007522 CGTGCGGGCGCTCAGCCGGCCAGACGGGCAAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTT
66 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
* * * *
20007587 TGCGTGCTGCCGATCCTGTTGCTGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTC
131 TGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTC
* * * * * *
20007652 TGTATGCCTAAGCCAACCGACGAAACAAGCGGGCAGGCATGCGGGCGGGCACTATGCCGGCCAGA
196 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCA-GCAGGCGGGCGGGCACTACGTCGACCAGA
* *
20007717 GAGACCGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
260 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* *
20007782 TTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
325 TTGCGTCCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* *
20007847 AGTTTCACGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTGCAGTTCGAGA
390 AGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCAGTTCGAGA
* *
20007912 TTTTTTTAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
455 TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* ** * * *
20007977 GTTAGCATGCACAAAACCATTCAGCCAAAAACTCGATGTGTACATGATTTTGTGACCATTTGAAA
520 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* *
20008042 AAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTC
585 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* **
20008107 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGTGAATATAAGGGCCAAGTACC
650 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACC
20008172 AGCACCCATCGCACATCATGTGTGCACACCCCCGTCGGCCCCCCCGATCGCCGGAACCCTAATGT
715 AGCACCCATCGCACATCATGTGTGCACACCCCC-TCGGCCCCCCCGATCGCCGGAACCCTAATGT
* * * * * *
20008237 C-GTC-TGTC-AGGTTCTCCGGCGATGGTGCCCCAATGAAGAAAAATGCGACACCAGCACATGCC
779 CGGTCAGGTCTAGATGCTCCGGCGATGGTG-CCCAACGAAGAAAAATACGGCACCAGCACATGCC
* *
20008299 CGAGCCCAGCATGCGCTCCCGCAACACTCGGTTCGGTCCGATCTTAGACTGG
843 CGAGCCCAGCATGTGCTGCCGCAACACTCGGTTCGGTCCGATCTTAGACTGG
* * * ** *
20008351 GAATGAGCTCCGTACGCTTAGACTGGGAATCAACTCCGTATGATTAAGTCAACCCGCGAAACGAG
1 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * *
20008416 CTTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGAGTATCGGTCGGGTCCCCCTC
66 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
* * * ** * *
20008481 TGCGTGCTGCCAATCTTGCTGCTACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTC
131 TGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTC
* *
20008546 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGACGGGCGTGCGGGCACTACGTCGACCAGA
196 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAG-CAGGCGGGCGGGCACTACGTCGACCAGA
* * **
20008611 GAGACGGGATGCGCAAGCCATGGACCGATATTGTGGTCA-GTGGGTTTAGGCACATCTTCATATT
260 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT-AGGTGGGTTTAGGCACATCTTCATATT
* * * *
20008675 TCTGCATCCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCTTTAAGCCTTCACGTG
324 TTTGCGTCCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * *
20008740 AAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTTGACACTTTTTACAGTTCGAG
389 AAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCAGTTCGAG
* * *
20008805 -GTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT-GTAGACATGATCCTTGTATTTT
454 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * *
20008868 TGTTGGCGTGCACAAAAACATTCAGCTAAAAGCTCGAAGTGTACAAGATTTTGTGACCATTTGAA
519 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * * * *
20008933 AAAAGTGTCACCATTTCAGGCATTTTAATAGCTACTGGCAGCGAACCTGTAAAATCTCAAATGCT
584 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * *
20008998 CTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGTCAATATAAGGGCCAAGTAC
649 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTAC
* * *
20009063 CAGCACCCATCGCACATCATGTGCGCACACCCCCT-----CCCCCGGT--CAGG--------T-T
714 CAGCACCCATCGCACATCATGTGTGCACACCCCCTCGGCCCCCCCGATCGCCGGAACCCTAATGT
* * * * *
20009112 C--TCCGG--TA-ATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATATGGCGCCAGCACATGCC
779 CGGTCAGGTCTAGATGCTCCGGCGATGGTG-CCCAACGAAGAAAAATACGGCACCAGCACATGCC
* *
20009172 CGA-CCCAGCATGTGCTGCCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGT
843 CGAGCCCAGCATGTGCTGCCGCAA----C-A--C--TC-G--GTT---C---G---G---TCCG-
*
20009236 ATGCTTAGACTGA
883 AT-CTTAGACTGG
*
20009249 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG
1 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * * * *
20009314 CGTGCGGGCGCTCAGTCGACCGGAGGGGCGGGATGCTCAAGCCAGGGATCGATCGGGTCCCCTTC
66 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
* * * ** *
20009379 TGCATGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGATTGGGAATGAACTC
131 TGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTC
* * * * * *
20009444 TGTATGCCTAAGCCAACCGATGAAACAAGCAGGTG-AGCAGGTGGGCGGGCACTACATCTG-CTA
196 CGTATGCCTAAGCCAACCGACGAAACGAGC-GG-GCAGCAGGCGGGCGGGCACTACGTC-GACCA
* * * * *
20009507 AAGAGATGGGATGCACAAGCCGTGGATCGAAAGGGTCGTAGGTGGGTTTAGGCACATCTTCATAT
258 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
** * * * **
20009572 TTTTGCGTCGTAATACCAGTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCTTGT
323 TTTTGCGTCCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * *
20009637 GAATTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTGC-GCTTTG
388 GAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCAG-TTCG
* ** ** * * * *
20009701 GGATTTTTTAAAATTTTTTCAAAAGGA-TTTTTTCCCCAAACCTGGTAGAGGTGATCCATGTATC
452 AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* *
20009765 TCTGTTGGCATGCACAAAAAAATTCAGCTACAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
517 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
20009830 AAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATG
582 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* ** * * *
20009895 CTCTTTAAGGGCGTGTTTGTTCTCAAGGTTTGATGAGGGATATGGGGCCAATATAAGGCCCAAGT
647 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGT
* * *
20009960 ACCAGCACCCATCGCACATCATCTGCGCACACCCCCT-AGCCCCCC
712 ACCAGCACCCATCGCACATCATGTGTGCACACCCCCTCGGCCCCCC
20010005 ATCACCGAAA
Statistics
Matches: 2984, Mismatches: 358, Indels: 172
0.85 0.10 0.05
Matches are distributed among these distances:
871 2 0.00
872 217 0.07
873 50 0.02
874 86 0.03
875 9 0.00
876 12 0.00
877 6 0.00
878 337 0.11
879 5 0.00
880 110 0.04
881 3 0.00
882 1 0.00
883 1 0.00
884 5 0.00
886 7 0.00
887 2 0.00
890 3 0.00
891 3 0.00
892 231 0.08
893 40 0.01
894 490 0.16
895 5 0.00
896 4 0.00
897 5 0.00
898 399 0.13
899 258 0.09
900 300 0.10
901 6 0.00
902 340 0.11
903 11 0.00
904 9 0.00
905 27 0.01
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
CGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
TGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTC
CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGCAGGCGGGCGGGCACTACGTCGACCAGAG
AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTT
TGCGTCCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
GTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCAGTTCGAGAT
TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCA
GCACCCATCGCACATCATGTGTGCACACCCCCTCGGCCCCCCCGATCGCCGGAACCCTAATGTCG
GTCAGGTCTAGATGCTCCGGCGATGGTGCCCAACGAAGAAAAATACGGCACCAGCACATGCCCGA
GCCCAGCATGTGCTGCCGCAACACTCGGTTCGGTCCGATCTTAGACTGG
Found at i:20009252 original size:26 final size:26
Alignment explanation
Indices: 20009213--20009291 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
20009203 CCAGTCTGAT
20009213 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20009239 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20009265 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20009291 C
1 C
20009292 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20010666 original size:774 final size:779
Alignment explanation
Indices: 20009265--20010816 Score: 2212
Period size: 774 Copynumber: 2.0 Consensus size: 779
20009255 ACTCCGTATG
* * *
20009265 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTCAGC
* * * * *
20009330 CGACCGGAGGGGCGGGATGCTCAAGCCAGGGATCGATCGGGTCCCCTTCTGCATGCTGCCGATCC
66 CGACCAGAGGGGCGGGATGCACAAGCCAGGGATCGATCGGGTCCCCTTCTACAAGCTGCCAATCC
* * * *
20009395 TGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTACAGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
20009460 CCGATGAAACAAGCAGGTGAGCAGGTGGGCGGGCACTACATCTGCTAAAGAGATGGGATGCACAA
196 CCGACG-AACAAGC--G-GAGC--G-GGGCGGGCACTACATCGGCTAAAGAGACGGGATGCACAA
* * * *
20009525 GCCGTGGATCGAAAGGGTCGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTCGTAATACCA
254 GCCGTGGATCGAAAGGCTCGTAGGTGGGTTTAGGCACATATTCATATTTTTGCATCGCAATACCA
** *
20009590 GTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCTTGTGAATTTTCATGGCAAGAC
319 GTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*** *
20009655 GACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTGCGCTTTGGGATTTTTTAAAATTTTTT
384 GACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTGCGCTTCAAGATTTTTTAAAATTTCTT
**
20009720 CAAAAGGATTTTTTCCCCAAACCTGGTAGAGGTGATCCATGTATCTCTGTTGGCATGCACAAAAA
449 CAAAAGGATTTTGGCCCCAAACCTGGTAGAGGTGATCCATGTATCTCTGTTGGCATGCACAAAAA
* * *
20009785 AATTCAGCTACAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCA
514 AATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
20009850 GACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTTTGT
579 GACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGCGTGTTTGT
*
20009915 TCTCAAGGTTTGATGAGGGATATGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCGCACATC
644 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCGCACATC
20009980 ATCTGCGCACACCCCCTAG-CCCCCC-ATCACCGAAACCCCAATGCCACCGATCAGGTTCTCCGG
709 ATCTGCGCACACCCCCTAGCCCCCCCGATCACCGAAACCCCAATGCCACCGATCAGGTTCTCCGG
20010043 TCCGAT
774 TCCGAT
* *
20010049 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTATGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTCAGC
* * *
20010114 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGA-CTGGGTCCACCTT-TACAAGCTGTCAAT
66 CGACCAGAGGGGCGGGATGCACAAGCCAGGGATCGATC-GGGTCC-CCTTCTACAAGCTGCCAAT
** * * *** *
20010177 CCTGCTGTAGCAACCTTCTGTCCAGTCTGCTCTTAGACTGGGAATGTACTCCGTATGCCTAAGCC
129 CCTGCTACAGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
20010242 AACCGACG-A-AA-C-GAGC-GGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCTGT
194 AACCGACGAACAAGCGGAGCGGGGCGGGCACTACATCGGCTAAAGAGACGGGATGCACAAGCCGT
* * * * *
20010302 GGATCGATAGGCTGGTAGGTGGGTTTAGGCACATATTTATATTTTCTGCAT-GCCAATGCCATTT
259 GGATCGAAAGGCTCGTAGGTGGGTTTAGGCACATATTCATATTTT-TGCATCG-CAATACCAGTT
*
20010366 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
322 TTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
20010431 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCAAGATTTTTTAAAATTTCTTCGA
387 TCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTGCGCTTCAAGATTTTTTAAAATTTCTTCAA
* * * * *
20010496 AAGGAGTTTTGGCCCCAAA-CTGGGTAG-GCGTGGTCCTTGTATTTTTGTTGGCATGCATAAAAA
452 AAGGA-TTTTGGCCCCAAACCT-GGTAGAG-GTGATCCATGTATCTCTGTTGGCATGCACAAAAA
* *
20010559 AATTCAG-TGAAAAACTGGAACTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTC
514 AATTCAGCT-AAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
20010623 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGCGTGTTTG
578 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGCGTGTTTG
*
20010688 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
643 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCGCACAT
* * * *
20010753 CATGTGCGCACACCCCCTGGCCCCCCCGATCATCGAAACCCCAATGCCATCGATCAGGTTCTCC
708 CATCTGCGCACACCCCCTAGCCCCCCCGATCACCGAAACCCCAATGCCACCGATCAGGTTCTCC
20010817 AGTGATGCTC
Statistics
Matches: 684, Mismatches: 74, Indels: 28
0.87 0.09 0.04
Matches are distributed among these distances:
772 79 0.12
773 138 0.20
774 246 0.36
775 6 0.01
776 38 0.06
780 1 0.00
781 2 0.00
782 1 0.00
783 1 0.00
784 168 0.25
785 4 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (779 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTCAGC
CGACCAGAGGGGCGGGATGCACAAGCCAGGGATCGATCGGGTCCCCTTCTACAAGCTGCCAATCC
TGCTACAGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAACAAGCGGAGCGGGGCGGGCACTACATCGGCTAAAGAGACGGGATGCACAAGCCGTGG
ATCGAAAGGCTCGTAGGTGGGTTTAGGCACATATTCATATTTTTGCATCGCAATACCAGTTTTAT
GGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACGATTTTAAAAACTTTTTGCGCTTCAAGATTTTTTAAAATTTCTTCAAAAGG
ATTTTGGCCCCAAACCTGGTAGAGGTGATCCATGTATCTCTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGCGTGTTTGTTCTCAAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCGCACATCATCTGCG
CACACCCCCTAGCCCCCCCGATCACCGAAACCCCAATGCCACCGATCAGGTTCTCCGGTCCGAT
Found at i:20010966 original size:26 final size:26
Alignment explanation
Indices: 20010929--20011007 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
20010919 CCGATCCGAT
* *
20010929 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20010955 TTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20010981 CGTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20011007 C
1 C
20011008 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20012177 original size:512 final size:512
Alignment explanation
Indices: 20011213--20012215 Score: 1627
Period size: 512 Copynumber: 2.0 Consensus size: 512
20011203 TACACCGACT
* *
20011213 AGAGAGATGGGATACGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATG
1 AGAGAGACGGGATACGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* *
20011278 TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAAGGTCCCTTAAGCCTTGACG
66 TTTCTGTGGGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAAGGTCCCTTAAGCCTTCACG
* *
20011343 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAAGGTTCG
131 TGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAAGATTCG
* *
20011408 AGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCCTGTATT
196 AGATTGTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTAGTAGATGTGATCCCTGTATT
20011473 GTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGATTTTGTAACCATTTG
261 GTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGATTTTGTAACCATTTG
20011538 AAAAAAGGGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
326 AAAAAAGGGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
20011603 CTCTTTAAGGGGGTGTGAGTTCTCATGGTTTGATGAGGGATAGGTGGGCAATATAAGGGCCAAGT
391 CTCTTTAAGGGGGTGTGAGTTCTCATGGTTTGATGAGGGATAGGTGGGCAATATAAGGGCCAAGT
20011668 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCAGGCCCTACGCCGGCC
456 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCAGGCCCTACGCCGGCC
* * * * *
20011725 AGAGAGACGGGATGCGCAAGCCGTGGATTGATGGGGTGGTAGGTGGGTTTAGGCACATGTTCATA
1 AGAGAGACGGGATACGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * *
20011790 TTTTTGTGGGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCG
66 TTTCTGTGGGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAAGGTCCCTTAAGCCTTCACG
** *
20011855 TGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGATTTG
131 TGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAAGATTCG
* * * *
20011920 GGATTGTTTAAAATTTTTTC-AGAAGGATTTTTGGTCCCAAACTTATTAGATGTGATCCTTGTAT
196 AGATTGTTTAAAATTTTTTCGA-AAGGATTTTTGGCCCCAAACTTAGTAGATGTGATCCCTGTAT
* * * * * *
20011984 T-TTTGTTGGCTTGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATT
260 TGTTT-TTGGCATGCACAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGATTTTGTAACCATT
* *
20012048 TGAAAAAAGTGTCCTCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
324 TGAAAAAAGGGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * *
20012113 TGCTCTTTAAGGGGGTGTGAGTTCTTGA-GGTTTGGTGAGGGATAGG-GGGCCAATATATGGGCC
389 TGCTCTTTAAGGGGGTGTGAGTTC-TCATGGTTTGATGAGGGATAGGTGGG-CAATATAAGGGCC
*
20012176 AAGTACCAGCACCCATCGCAGATCATGTGCGCACACCCCC
452 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
20012216 CGTCCCCCTT
Statistics
Matches: 452, Mismatches: 35, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
511 7 0.02
512 443 0.98
513 2 0.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (512 bp):
AGAGAGACGGGATACGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
TTTCTGTGGGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAAGGTCCCTTAAGCCTTCACG
TGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAAGATTCG
AGATTGTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTAGTAGATGTGATCCCTGTATT
GTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGATTTTGTAACCATTTG
AAAAAAGGGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
CTCTTTAAGGGGGTGTGAGTTCTCATGGTTTGATGAGGGATAGGTGGGCAATATAAGGGCCAAGT
ACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCAGGCCCTACGCCGGCC
Found at i:20012400 original size:26 final size:26
Alignment explanation
Indices: 20012364--20012413 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20012354 GTCCGATCTC
*
20012364 AGACTGGGAATGAACTCTGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
20012390 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
20012414 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:20014029 original size:26 final size:26
Alignment explanation
Indices: 20014000--20014052 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20013990 CCGGTCCGAT
20014000 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20014026 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20014052 C
1 C
20014053 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20015975 original size:717 final size:713
Alignment explanation
Indices: 20014173--20016363 Score: 3386
Period size: 717 Copynumber: 3.1 Consensus size: 713
20014163 GTAACACTCA
* * * * *
20014173 ATCCAGTCTGATCTTAGGCTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGG
1 ATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA-GAG-AGG
* * * *
20014238 CAGACAGGCGGACGGGCACTACGACGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGG
64 C-GGCGGGCGGGCGGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* *
20014303 TGGTACGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAA
127 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
20014368 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
192 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * * *
20014433 TCACGATTTTTGAAACTTTTTGCCGTTTGGGATTTTTTAAAATATTTTTGGAAGGCGTTTTGGCC
257 TCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCC
20014498 CCAAAC-T--TAGACGTGATCCTTGTATTTTTTTTGGCA--CATACAAAAATATTCAGCTAAAAA
322 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATA-AAAAA-ATTCAGCTAAAAA
*
20014558 CTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGC
385 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGC
* * *
20014623 TATTGGCAGCAAACCTGTAAAATCTGAAATGTTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
450 TACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGAT
* * *
20014688 GAGGGATAGGGGGCCAATATAAGGGCCAAG-ACCAGCGCCCATCGCACCTCATGTGCGCACACCC
514 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCC
* *
20014752 CCCAGCCCCCCCGATCGTCGGAACCTCAACGCTGCCGGTCAGGTTCTCCGATGATGCTCCGGTAA
579 CCCGGCCCCCCCGATCGTCGGAACCTCAATGCTGCCGGTCAGGTTCTCCGATGATGCTCCGGTAA
*
20014817 TGGTGCCCCGATGAAGAAAATTAC-AGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAA
644 TGGTGCCCCGATGAAGAAAATTACGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
20014881 CCCTTG
708 CCCTTG
* * *
20014887 GTCCGGTCCGATCTTAGACT-AGAATGAACTCCGTATGCCTAAACCAACCGATGAAAG-GA----
1 ATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAGAGAGGCG
20014946 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
66 GCGGGCGGGCGGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* *
20015011 TAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCATTGCCATTTTTATGGCTTGTAAATTC
130 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
*
20015076 ATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
195 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * *
20015141 TGATTTTCGAAACGTTTTACGGTTCGGGATTTTTTAAAATTCTTTCGGAAGGAGTTTTGGCCCCA
260 TGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCA
* * *
20015206 AACTTGGCAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCGA
325 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGA
20015271 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTG
390 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTG
*
20015336 GCAGCAAACCTATAAAATCTGAAATGCTCTTTAAGGCGGTGTGAG-TCTCGAGGTTTGATGAGGG
455 GCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGG-GGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
20015400 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCATACCCCCCGG
519 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCGG
* *
20015465 CCCCCTCGATCGTCGGAACCTCAATGCTGCCAGTCAGGTTCTCCGATGATGCTCCGGTAATGGTG
584 CCCCCCCGATCGTCGGAACCTCAATGCTGCCGGTCAGGTTCTCCGATGATGCTCCGGTAATGGTG
* *
20015530 CCCCGATGAAGAAAATTACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCG
649 CCCCGATGAAGAAAATTACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTG
*
20015595 ATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATAAAATGAGTAGG
1 ATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA-GAG-AGG
20015660 CGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
64 C-GGCGGGCGGGCGGGCACTACGC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
*
20015725 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
127 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
* *
20015790 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTT
192 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * *
20015855 TCATGATTTTTGAAACTTTTTACGGTTCGAGAATTTTTAAAATTTTTTTGGAAGGAGTTTTTGCC
257 TCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCC
* *
20015920 CCAAGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACT
322 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACT
* *
20015985 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGATA
387 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTA
*
20016050 CTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAG
452 CTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
20016115 GGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACGTCATGTGCGCACAACCCCC
517 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-AA-CCCC
* * * * * * * **
20016180 CCGACCCCCCCGATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGCCT-ATGCTCCAGCGA
580 CCGGCCCCCCCGATCGTCGGAACCTCAATGCTGCCGGTCAGGTTCTCCG-ATGATGCTCCGGTAA
* * ** * * * *
20016244 TGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAACATGTGCTGCCGTAAC
644 TGGTGCCCCGATGAAGAAAATTACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
20016309 CCTTG
709 CCTTG
* * * *
20016314 GTCCGGTCCGATCTTAGACTGGGAATGAATTCCATATGCCTAAGTCAACC
1 ATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
20016364 CACGAAACGA
Statistics
Matches: 1353, Mismatches: 102, Indels: 39
0.91 0.07 0.03
Matches are distributed among these distances:
705 243 0.18
706 1 0.00
707 45 0.03
708 324 0.24
709 38 0.03
710 4 0.00
711 2 0.00
712 2 0.00
713 33 0.02
714 16 0.01
716 9 0.01
717 473 0.35
718 1 0.00
719 161 0.12
720 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (713 bp):
ATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAGAGAGGCG
GCGGGCGGGCGGGCACTACGCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAA
ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAA
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCGGCC
CCCCCGATCGTCGGAACCTCAATGCTGCCGGTCAGGTTCTCCGATGATGCTCCGGTAATGGTGCC
CCGATGAAGAAAATTACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTG
Found at i:20016571 original size:147 final size:147
Alignment explanation
Indices: 20016296--20016564 Score: 367
Period size: 147 Copynumber: 1.8 Consensus size: 147
20016286 AGCCCAACAT
* * * *
20016296 GTGCTGCCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAATTCCATATGCCTAAGTCA
1 GTGCTGCCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
* * * * *
20016361 ACCCACGAAACGAGCGTGCGGGCGCTCCGCCGGCCAAAGGGGCGGGATGCACAAGCCAGGGATCA
66 ACCCACGAAACGAGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCACAAGCCAGGGATCA
20016426 GCCAGGTCCCCCTCTAC
131 GCCAGGTCCCCCTCTAC
* * * * * *
20016443 GTGCTGTCGCAACCCTTTGTCTGATCTGATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCA
1 GTGCTGCCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
* * * *
20016508 ACCGACGAAACGAGCGGGCGGGCACTACGCCGGTCAGAGAGACGGGATGCGCAAGCC
66 ACCCACGAAACGAGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCACAAGCC
20016565 GTGGATCGAT
Statistics
Matches: 103, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
147 103 1.00
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (147 bp):
GTGCTGCCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
ACCCACGAAACGAGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCACAAGCCAGGGATCA
GCCAGGTCCCCCTCTAC
Found at i:20017212 original size:26 final size:26
Alignment explanation
Indices: 20017176--20017228 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20017166 CTGGTCTGAT
* *
20017176 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20017202 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20017228 C
1 C
20017229 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20018109 original size:26 final size:26
Alignment explanation
Indices: 20018080--20018132 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20018070 CCGATCCGAT
* *
20018080 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
20018106 CTTAGACTAGGAATGAACTCAGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
20018132 C
1 C
20018133 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCAGTATG
Found at i:20018527 original size:892 final size:885
Alignment explanation
Indices: 20015577--20019842 Score: 5346
Period size: 853 Copynumber: 4.9 Consensus size: 885
20015567 AGCCCAGCAT
* * * *
20015577 GTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 GTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * * * *
20015642 ACCGATAAAATGAGTAGGCGGGCGGGCGGGCGGGCACTACG-CTGGCCAGAGAGACGGGATGCGC
66 ACCGACGAAACGAG-CGGCAGGCAGGCAGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGC
* *
20015706 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATG
129 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATCATGCCAATG
* *
20015770 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCTTGGCAA
194 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* *
20015835 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGAATTTTTAAAATTT
259 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAGTT
* * * * * *
20015900 TTTTGGAAGGAGTTTTTGCCCCAAGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATA
324 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
20015965 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
389 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
20016030 TTCAGACACTTTAATGGATACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAA-GGGGTGT
454 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
20016094 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCA
519 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
20016159 CGTCATGTGCGCACAACCCCCCCGACCCCCCCGATCGCCGGAACCCCAATGCCGCTGGTCAGGTT
584 CAT-ATGTGCGCAC-A-CCCCCCG-GCCCCCCGATCACCGGAACCCCAATGCCGCCGATCAGGTT
* * * ** **
20016224 CTCCGCCTATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGC
645 CTTCGACGATGCTTGA-CGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCTCGAGC
* *
20016289 CCAACATGTGCTGCCGTAACCCT---T--G----G-TC-----C---G---G---TCCG-AT-CT
709 CCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
20016328 TAGACTGGGAATGAATTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCCGCCG
774 TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAG
* * * *
20016393 GCCAAAGGGGCGGGATGCACAAGCCAGGGATCAGCCAGGTCCCCCTCTAC
839 GCCAAA-GGGCGGGATGC-CAAGCCGGGGAT-TGACAGGTCCCCCTCTGC
* ** * *
20016443 GTGCTGTCGCAACCCTTTGTCTGATCTGATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCA
1 GTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
20016508 ACCGACG-AA--A-C-G-A-GC--G--GGCGGGCACTACGCCGGTCAGAGAGACGGGATGCGCAA
66 ACCGACGAAACGAGCGGCAGGCAGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * **
20016562 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAACACC
131 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATCATGCCAATGCC
20016626 ATTTTT-TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
196 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * * *
20016690 CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTTT
261 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAGTTTT
* * * * *
20016755 TCGGAAGGAGTTTTGGCCTCATACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATACACAAA
326 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
*
20016820 AAAAGTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
391 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
20016885 CTGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGA
456 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
20016950 GTTCTCGAGGTTTGATGAGGGATA-GGGGCCGATATAAGGGCCAAGTACCAGCACCCATCGCACA
521 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
20017014 TATGTGTGCACACCCCTCGGTCCCCCCGATCACCGGAACCCCAATGCCGCCGATCAGGTTCTTCG
586 TATGTGCGCACACCCCCCGG-CCCCCCGATCACCGGAACCCCAATGCCGCCGATCAGGTTCTTCG
* * * * * * *
20017079 ACGTTGCTCCGGCGATGATACCCCGACGAAGAAAAATGC-GACACCAGCACATGCCCAAGCCCAG
650 ACGATGCT-TGACGATGGTGCCCCGACGAAGAAAAATGCAG-CACCAGCACATGCTCGAGCCCAG
* * * * * *
20017143 CTTGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGA
713 CATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * * *
20017208 CTGGGAATGAACTCCATATGCGTAAGTCAACCCACGAAATGAACGTGCGGGCGTTCAGCCGGCTA
778 CTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAGGCCA
** * * *
20017273 AAGGTTTGGGATGCACCAA-CCGGGGATCGATCGGGTCCCCCTCTGT
843 AAGG-GCGGGATG--CCAAGCCGGGGATTGA-CAGGTCCCCCTCTGC
* * * ** *
20017319 GTGCTGCCGATCCTGTTGCCACAACCCTTGGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGT
1 GTGCT---G--CC----G---CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGT
* * * * * *
20017384 ATGCCTAAGCCAACCGACGAAATGAGCGGACGGGCAGGCGGGCGGGCACTATGTCGACCAAAGAG
54 ATGCCTAAGCCAACCGACGAAACGAGCGG-CAGGCAGGCAGGCGGGCACTACGTCGGCCAGAGAG
** * *
20017449 ATAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTG
118 ACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
* *
20017514 T-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG
183 TCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * *
20017578 TTTCATGGCAAGACGACCCGTTTTCTATTTTTCGTGATTTTTGAAACTTTTTACGGTTTGGGATT
248 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATT
** * *
20017643 TTTTAAAAGTTTTTCGAAAGGAGTTTTGGTTCCAAACTTGGTAGACGTGATCCTTGTATTCTTGT
313 TTTTAAAAGTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGT
*
20017708 TGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
378 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * * * *
20017773 AATGTCTCGATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGTTCTT
443 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTT
*
20017838 TAAGGGGGTGTGAGTTCTCGAGGTTTTATGAGGGATAAGGGGGCCAATATAAGGGCCAAGTACCA
508 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGGCCAATATAAGGGCCAAGTACCA
* *
20017903 GCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCACCGGAACCCTAATGCCGC
572 GCACCCATCGCACAT-ATGTGCGCACA-CCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGC
* * * *
20017968 C-AGTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCC-AGTGCAGAAAAATGCAGCACCAGC
635 CGA-TCAGGTTCTTCGACGATGCT-TGACGATGGTGCCCCGA-CGAAGAAAAATGCAGCACCAGC
* * *
20018031 ACATGCTCGAGCCTAGCATGTGCTGTCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGA
697 ACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGA
* *
20018096 ACTCCGTATGCTTAGACTAGGAATGAACT-CAGTATGCCTAAGTCAACCCACGAAACGAGCGTGT
762 ACTCCGTATGCTTAGACTGGGAATGAACTCCA-TATGCCTAAGTCAACCCACGAAACGAGCGTGC
* *
20018160 GGGCGCTCAGCAGGCCAAAGTGGCGGGATGCGCAAGCTGGGGATTGGACAAGTCCCCCTCTGC
826 GGGCGCTCAGCAGGCCAAAG-GGCGGGATGC-CAAGCCGGGGATT-GACAGGTCCCCCTCTGC
* * * * * *
20018223 GTGCTGCCGCAACCCTCGGTCCAATCTGATCTTAGACTGGGAATTAGCTGCATATGCCTAAACCA
1 GTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
20018288 ACCGACAAAACGAGCAGGCAGACGGGCAGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
66 ACCGACGAAACGAGC-GGCAGGCAGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * *
20018353 AGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAATC-TGCCAATGC
130 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATCATGCCAATGC
20018417 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
195 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
20018482 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTGTACGGTTCAAGATTTTTTAAAATTTT
260 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAGTTT
* *
20018547 TTCGAAACGAGTTTTGGCCCCAAAGTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCGA-A
325 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC-ACA
** *
20018611 AAAAAACACAGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCAT
389 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
20018676 TTCATACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGT
454 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
20018741 GAGTTCTCGAGATTTGATTAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCA
519 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
20018806 CATATGTGCGCACACCCCCCCGGCCCCCTTGATCATCGGAACCCCATTGCCGCCGATCAGGTTC-
584 CATATGTGCGCACA-CCCCCCGGCCCCC-CGATCACCGGAACCCCAATGCCGCCGATCAGGTTCT
* *
20018870 TC--C-A------ACGATGGTGCCTCGACGAAGAAAAATG-AGGCACCAGCACATGATCGAGCCC
647 TCGACGATGCTTGACGATGGTGCCCCGACGAAGAAAAATGCA-GCACCAGCACATGCTCGAGCCC
* * * * * * *
20018925 AGC-TGTGCTACCGTAACCCTTGGTCCAATCTGATCTTAGACAGGGAATGAACTCCGTAAGCTTA
711 AGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* ** *
20018989 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGCGCGGGCGCT---CA-G-
776 GACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAGGC
* * ** **
20019049 C------CGGG-T-CC---CC----CTCTG-CA-TTCTGCCGAT-C
841 CAAAGGGCGGGATGCCAAGCCGGGGAT-TGACAGGTCCCCCTCTGC
* * * *
20019077 CTGCTGCCGCAACCCTTC-GTTCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCG
1 GTGCTGCCGCAACCC-TCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * * *
20019141 AACTGATGAAACGAGCAGACGGGTAGGCAGGCAGGAACTACGTCGGCCA-AGAGACGGGATGCAC
65 AACCGACGAAACGAGC-GGCAGGCAGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
*
20019205 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-CGTGCCAATG
129 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATCATGCCAATG
20019269 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
194 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* *
20019334 GACGACTCATTTACTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAGTT
259 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAGTT
* * * * *
20019399 TTTTGGAAGGAGGTTTGGCCCCGAACTTGGTAGACATGATCCTTGTACTTTTGTTGGCATGCACA
324 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
*
20019464 AAAAAATTGAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
389 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
20019529 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTTAAATGCTCTTTAAGGGGGTGT
454 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
20019594 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
519 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
** *
20019659 CATCATGTGCGCACACCCCCCGGCCCCCCGGATCGTCGGAACCCCAATGCCGCCGATCAGGTTTT
584 CAT-ATGTGCGCACACCCCCCGGCCCCCC-GATCACCGGAACCCCAATGCCGCCGATCAGGTTCT
* * * **
20019724 TCGATGATGCTTCGACGATGGTGCCCCGATGAGGAAAAATGTGGCACCAGCACATGCTCGAGCCC
647 TCGACGATGCTT-GACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCC
** * *
20019789 AGCATGCACTGCCGCAACCCTCGGTCC-AGTCCGATCTTAGATTGGGAATAAACT
711 AGCATGTGCTGCCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACT
20019843 TTTTTTGCCT
Statistics
Matches: 2976, Mismatches: 323, Indels: 203
0.85 0.09 0.06
Matches are distributed among these distances:
849 1 0.00
850 111 0.04
851 2 0.00
852 11 0.00
853 810 0.27
854 239 0.08
855 9 0.00
856 3 0.00
857 3 0.00
858 3 0.00
859 1 0.00
860 3 0.00
861 1 0.00
863 1 0.00
864 50 0.02
865 42 0.01
866 62 0.02
867 4 0.00
868 1 0.00
871 1 0.00
874 5 0.00
875 6 0.00
876 98 0.03
877 3 0.00
878 1 0.00
879 103 0.03
880 46 0.02
881 2 0.00
885 1 0.00
887 1 0.00
888 58 0.02
889 2 0.00
890 26 0.01
891 71 0.02
892 472 0.16
893 4 0.00
895 1 0.00
896 2 0.00
898 1 0.00
899 2 0.00
900 94 0.03
901 315 0.11
902 2 0.00
903 46 0.02
904 245 0.08
905 11 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (885 bp):
GTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAACGAGCGGCAGGCAGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATCATGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAGTTTT
TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
TATGTGCGCACACCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGCCGATCAGGTTCTTCGA
CGATGCTTGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAGGCCAAAG
GGCGGGATGCCAAGCCGGGGATTGACAGGTCCCCCTCTGC
Found at i:20018996 original size:26 final size:26
Alignment explanation
Indices: 20018959--20019008 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20018949 CCAATCTGAT
20018959 CTTAGACAGGGAATGAACTCCGTAAG
1 CTTAGACAGGGAATGAACTCCGTAAG
*
20018985 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACAGGGAATGAACTCCGTA
20019009 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTAAG
Found at i:20021344 original size:26 final size:26
Alignment explanation
Indices: 20021293--20021345 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20021283 CTGGTCCGAT
**
20021293 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20021319 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20021345 C
1 C
20021346 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20022036 original size:891 final size:890
Alignment explanation
Indices: 20020304--20022405 Score: 2985
Period size: 891 Copynumber: 2.3 Consensus size: 890
20020294 CCTCGACCGA
* ** *
20020304 TCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATTGGGCACCAGTACATGCCCGAGCCTAG
1 TCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAG
* * * * * *
20020369 CATGTGATGCCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCTGTTTGCTTAGA
66 CATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
* * *
20020434 CTGGGAATAAACCCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCA
131 CTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCA
* * * * * * * *
20020499 GAGAGGCGAGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGAGTGCTGGCGATCCTGTTGC
196 GAGGGGCGGGATGTGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGC
* * * * * * * **
20020564 CGTAACCCTCGGTTCGGTCCGATTTTAGACTAGGAATAAATTTTGTATAACTAACCAACCGACGA
261 CGCAACCCTC-GTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAACCAACCGACGA
** * * * * *
20020629 AACGAACGAACGGGTGGGCGGGTGGGCATTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTTG
325 AACGAACGAACGGGCAGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
20020694 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
390 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
*
20020759 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
455 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCAT
* * * ** *
20020824 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTAAAATTTTTTTTGAAGGC
520 TTTCTATTTTTAACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTAAAATTTTTTCGGAAGGA
* * *
20020889 GTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAG
585 GTTTTGGCCCCAAACTTGACAGACGTGATCCTTGTATTTTTCTTCGCACGCACAAAAAAATTCAG
*
20020954 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAGTTCAAACACTT
650 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAAGTTCAAACACTT
* * *
20021019 TAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCGAG
715 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCGTTAAGGGGGTGTGAGTTCTCGAG
*
20021084 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCACACATCATGTGCA
780 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCACCACACATCATGTGCA
* *
20021149 CACACCCCCCCAGCACCCCCC-ATCGTCGGAACCCCAATGCCGCCGG
845 CACACCCCCCCAGC-CCCCCCGATCGTCAGAACCCCAATGCCGCCAG
*
20021195 TCAGGTTCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCT-G
1 TCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAG
* *
20021259 ACATGTGCTGTCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
66 -CATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
* * *
20021324 ACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGGAACGAGCGTGCGGGCGCTCAGCCGGCC
130 ACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCC
20021389 AGAGGGGCGGGATGTGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTG
195 AGAGGGGCGGGATGTGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTG
* * * *
20021454 CCGCAACCCTCAGTCCAGTCTGATCTTAGACTAAGAATGAACTCTGTATGCCTAAGCGATCCGAC
260 CCGCAACCCTC-GTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAA-CCAACCGAC
*
20021519 GAAACGAGC-AAGCGGGCAGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
323 GAAACGAACGAA-CGGGCAGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
20021583 TGGATCGATAGGGTGGTA-GTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTT
387 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
20021647 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACC
452 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACC
* *
20021712 CGTTTTCTATTTTTAATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
517 CATTTTCTATTTTTAACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTAAAATTTTTTCGGA
* * * *
20021777 AGGAGTTTTGGCCCCAAACTTGATAGACGTGATCTTTGTATTTTTCTTCGCATGCATAAAAAAAT
581 AGGAGTTTTGGCCCCAAACTTGACAGACGTGATCCTTGTATTTTTCTTCGCACGCACAAAAAAAT
* * *
20021842 TCAGCTAAAAACT-GTTAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCAATTTCAGA
646 TCAGCTAAAAACTCG-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAAGTTCAAA
20021905 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCGTTAAGGGGGTGTGAGTTC
710 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCGTTAAGGGGGTGTGAGTTC
* * *** *
20021970 TCGAGGTTTGATGAGGGATAGGGGTCCAATATAAGGGCCAAGTACCAACATCCATTGCATATCAT
775 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCACCACACATCAT
* ** * *
20022035 GTGCGCACATGCCCCCAGCCCCCCCGATCGTCAGAACCCTAATGCCGTCAG
840 GTGCACACACCCCCCCAGCCCCCCCGATCGTCAGAACCCCAATGCCGCCAG
** * *
20022086 TCAATTTCTCCGGCGATGCTCTGGCGATGGTGCCTCGACGAAGAAAAATACGGCACTAGCACATG
1 TCAGGTTCT-C--CGA--------CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATG
* * * *
20022151 CCCGAGCCTAGCATGTGCTGTCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCC
55 CCCGAGCCTAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCT
* * *
20022216 GTATGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGTGC
120 GTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * * * *
20022281 TCAACCGGCCAGAGGGGCAGAATGTGCTAGCC-GGGATCGATCGGGTCCTCTTTTGCGTGCTATC
185 TCAACCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTC
** * * *
20022345 GATCCTGCTGTTGCAACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGC
250 GATCCTGCTGCCGCAACCCTCG-TCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGC
20022406 TTATACTGGG
Statistics
Matches: 1073, Mismatches: 119, Indels: 28
0.88 0.10 0.02
Matches are distributed among these distances:
890 7 0.01
891 606 0.56
892 192 0.18
894 3 0.00
900 1 0.00
901 80 0.07
902 183 0.17
903 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (890 bp):
TCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAG
CATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
CTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCA
GAGGGGCGGGATGTGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGC
CGCAACCCTCGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAACCAACCGACGAA
ACGAACGAACGGGCAGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCATT
TTCTATTTTTAACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCCAAACTTGACAGACGTGATCCTTGTATTTTTCTTCGCACGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAAGTTCAAACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCGTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCACCACACATCATGTGCAC
ACACCCCCCCAGCCCCCCCGATCGTCAGAACCCCAATGCCGCCAG
Found at i:20022246 original size:26 final size:26
Alignment explanation
Indices: 20022195--20022247 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20022185 CCAGTCTGAT
*
20022195 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20022221 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
20022247 C
1 C
20022248 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20022408 original size:26 final size:26
Alignment explanation
Indices: 20022379--20022431 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20022369 CCGGTCTGAT
*
20022379 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20022405 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20022431 C
1 C
20022432 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20022499 original size:184 final size:184
Alignment explanation
Indices: 20022166--20022590 Score: 529
Period size: 184 Copynumber: 2.3 Consensus size: 184
20022156 GCCTAGCATG
* * *
20022166 TGCTGTCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
1 TGCTGTTGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* *
20022231 GAATGAACTCTATATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGG
66 GAATGAACTCCATATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGG
* *
20022296 GGCAGAATGTGCTAGCC-GGGAT-CGATCGGGTCCTCTTTTGCGTGCTATC-GATCC
131 GGCAGAA-GTGCTAGCCGGGGATCCG-TCGGGTCCCCTTCTGCGTGCTA-CGGATCC
* * *
20022350 TGCTGTTGCAACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTATACTGG
1 TGCTGTTGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * *
20022415 GAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGTGGGCGCTCAACCGGTCAGAGG
66 GAATGAACTCCATATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGG
* * * *
20022480 GTCGGGA-TGCATAAGCCGGGGATCCGTCGGGTCCCCTTCTGCGTGCTACGGATGC
131 GGCAGAAGTGC-T-AGCCGGGGATCCGTCGGGTCCCCTTCTGCGTGCTACGGATCC
* * ** *
20022535 TACTATTGTAACCCTC-AGTTTGGTCCT-TTCTTAGACTGGGAATGAACTCCGTATGC
1 TGCTGTTGTAACCCTCGA-TCCGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGC
20022591 CTAAGCCAAC
Statistics
Matches: 208, Mismatches: 26, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
182 3 0.01
183 1 0.00
184 127 0.61
185 73 0.35
186 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
TGCTGTTGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCATATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGG
GGCAGAAGTGCTAGCCGGGGATCCGTCGGGTCCCCTTCTGCGTGCTACGGATCC
Found at i:20023898 original size:26 final size:26
Alignment explanation
Indices: 20023869--20023921 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20023859 ATGGTCCAAT
20023869 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20023895 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20023921 C
1 C
20023922 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20025385 original size:26 final size:26
Alignment explanation
Indices: 20025356--20025408 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20025346 CCGGTCCGAT
*
20025356 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
20025382 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
20025408 C
1 C
20025409 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Done.