Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 117 of 117
Found at i:20026802 original size:903 final size:900
Alignment explanation
Indices: 20024747--20031669 Score: 8721
Period size: 899 Copynumber: 7.8 Consensus size: 900
20024737 ATTCAGTGCA
* * *
20024747 ATCGATAGGGTGATAGGTGGGTTTAGCCACATCTTCATATTTCTACGTGCCAGTGCCATTTTTAT
1 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
* * * ** *
20024812 GGCTTGTAAATTCGTACAAAGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATTACTCGT
66 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
* * * * * *
20024877 TTTCTTTTTTTCATGATTTTTAAAACTTTTTGCAGTTCGAGTTTTTTTAAAATTTTTTCGGAAGG
131 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
20024942 AGTTTTGGCCCCAAACTTGGTAGACGTGAT-CTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
196 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
20025006 GCTAAAAGCTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
261 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
20025071 TTAATGGCTACTACCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
326 TTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * *
20025136 GGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGT
391 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
20025201 GCACACCCCCCGGACCCCCTCGATCGTCGGAACCCCAATGCCACCGATCAGGTTCTCCGACGATG
456 GCACACCCCCCGG-CCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGATGATG
* * * * ** * *
20025266 CTCTGATGATGGTG-CCTGACGAAGAAAAATGCAGCACCAGCACATGCTTGAGCCTAGGATGTGC
520 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * * * *
20025330 TACCGTAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAA
585 TGCCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCATTTGCTTAGACTGGGAA
* * * *
20025395 TGAACTCCATATGCCTAAGTCAACCCATGAAACGAGTGTGCGCGTGCTCAGCCGGCCAGAGGGGC
650 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGC
* ** *
20025460 GGGATGCGTAAGCCGGGGATCGGTTGGGT-CCCCTCTG---G--G----TGCTG-T-CGTAACCC
715 GGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCATGCTGCTAATCCTGCTGCGTAACCC
* * *
20025513 TCCA-TCTGG-TCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGA
780 T-CAGTCCGGTTC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * * * * * *
20025576 GCGGGTGGACGGGCGGGCGGCACTACGTCGACTAGAGAGATGGGACGCGCAAGCCATGG
843 GCGGGCGGGCGGGC-AGCGTCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * *
20025635 ATCGATAGGGTGATAGGTGGGTTTAGCCACATCTTCATATTTCTAAGTGCCAGTGCCATTTTTAT
1 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
** *
20025700 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATTACTCGT
66 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
* * * * * *
20025765 TTTCTTTTTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGTTTTTTTAAAATTTTTTTGGAAG
131 TTTC-TATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
* *
20025830 GAGTTTTGGCCCCAAACTTGGTACACGTGAT-CTTGTATTTTTGTTGGCATGCATAAAAAAATTC
195 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * * *
20025894 AGCTAAAAATTTGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTTAGACAC
260 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
20025959 TTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGG
325 TTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
20026024 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTG
390 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
*
20026089 CGCACACCCCCCTTGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGA
455 CGCACACCCCCC--GGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGATGA
* * *
20026154 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAG-CCAGCATAT
518 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * * *
20026218 GCTGTCGTAAACCTTGATCTGGTTCGATCTTAGACTGGGAATGAACTCCATTTCCTTAGACTGGG
583 GCTGCCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCATTTGCTTAGACTGGG
* * * * **
20026283 AATGAACTCTGTATGCCTAAGTCAACCCATGGAACGAGCGTGCGGGCGCTCAATCGGCCAGAGGG
648 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
* * * * *
20026348 GCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTACACGTTGCTAATCCTGTTGCTGCAA
713 GCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCATGCTGCTAATCCTGCTGC-GTAA
* * * *
20026413 -CCTCGGTCGGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACG
777 CCCTCAGTCCGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
*
20026477 AGCGGGCGGGCGGGCAAGCAGTCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTTG
842 AGCGGGCGGGCGGGC-AGC-GTCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* **
20026538 ATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
1 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
*
20026603 GGCTTGTAAATTCATACAATGGTCCCTTAAGTCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
66 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
* * ** * * *
20026668 TTTCTATTTTTTATGATTTTTGAAACATTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGA
131 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* *
20026733 AGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCA
196 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
20026798 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
261 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * * * * *
20026863 TTAATTGCTATTGGCAACAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGATGTGAGTTCTGGA
326 TTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
20026928 GGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGC
391 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
*** * * *
20026993 GCACACCCCCCGGCCCCTTAGATAGCCGGAACCCTAATGCCGTCCG-TCAGGTTCTCCGAGGATG
456 GCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCG-CCGATCAGGTTCTCCGATGATG
* * * * * *
20027057 CTTCGGCGATGGTGCCCCGACAAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATATGC
520 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * *
20027122 TGCCGCAACCCTCGATCCGGTCCAATGTTAGACTGGGAAAGAACTCCATTTGCTTAGACTGGGAA
585 TGCCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCATTTGCTTAGACTGGGAA
* * * * *
20027187 TGAGCTCCGTATGCTTAAGTCAACCCACGAAACGATCGTGTGGGCGCTCAGCCGGCCAGAGGGGC
650 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGC
** * * * * * * * **
20027252 AAGATACGCAAGTCGGTGATTG-GTCGGGTCCCCCTCTACATGCTGCTGATCCTGCTGCAACAAC
715 GGGATGCGCAAGCCGGGGATCGACT-GGGTCCCCCTCTGCATGCTGCTAATCCTGCTGC-GTAAC
* ** * *
20027316 CGTCAGTCC-AATCTGATCTAAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
778 CCTCAGTCCGGTTC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * *
20027380 AGCGGGCGGGCGTGC-G-GGCACTACGTCGACCAGAGAGACGGGATGTGCAAGCCGTGG
842 AGCGGGCGGGCGGGCAGCGTCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
20027437 ATCGATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTAT
1 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
* **
20027502 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTTGTGGCAAGACGACTCAT
66 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
* *
20027567 TTTTTATTTTTCACGATTTTCAAAACTTTTCT-CGGTTCCAGATTTTTTAAAATTTTTTCGGAAG
131 TTTCTATTTTTCACGATTTTCAAAACTTTT-TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
* * * *
20027631 GAGTTTTGTCCCCAAACTTTGTAGACATGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTC
195 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
**
20027696 AGCTAAAAACTCTTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
260 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
20027761 TTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGGGAGTTCTCG
325 TTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
20027826 AGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGTACCCATCACACATCATGTA
390 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *** * *
20027890 CGCACACCCCCCCAGCCCCCCAGATCGTTAGAAACCCAATACCGCC-AGTCAGGTTCTCCGATGA
455 CGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGA-TCAGGTTCTCCGATGA
* * * *
20027954 TGCTCCGACGATGGTGCCCCGACAAAGAAAAATGTGGCACCAACAAATGCCCGAGCCCAGCATGT
518 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
*
20028019 GCTGCCGCAACCCTCGGTCCGG-TCTGATCTTAGACTGGGAATGAACT--ATGTATGCTTAGACT
583 GCTGCCGCAACCCTCGATCCGGTTC-GATCTTAGACTGGGAATGAACTCCAT-T-TGCTTAGACT
* * *
20028081 AGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGA
645 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGA
* * ** * *
20028146 GGGGCGGGATGCGTAAGCCGGGGATCGGCTGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCCA
710 GGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCATGCTGCTAATCCTGCTG-CG
* **
20028211 TAACCCTCAGTCCGGTTCAATCTTAGACTTGGAATTCAC-CACGTATGCCTAAGCCAACCGACGA
774 TAACCCTCAGTCCGGTTCAATCTTAGACTGGGAATGAACTC-CGTATGCCTAAGCCAACCGACGA
* * * * *
20028275 AACGACCGGGCGGGCGGAC-GGGT-ACTACGCCGGCCAGAGAGACGGGATCCGCAAGCCGTGG
838 AACGAGCGGGCGGGCGGGCAGCGTCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
20028336 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCCTATTTCTACATACCAATGCCATTTTTAT
1 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
*
20028401 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCAT
66 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
** * *
20028466 TTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTC-AGGATTTTTTCAAATTTTTTTGGAAG
131 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAG
* * *
20028530 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTTGCAAGCATAAAAAAATTC
195 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
20028594 AACTAAAAACCCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
260 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * * *
20028659 TTTAATGGCAAC-CGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGTGTTCTG
325 TTTAATGGCTACTAG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
20028723 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACGAGCACCAACCGCACATCATGT
389 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * * * * ** **
20028788 GTGCACAGCCCCCGGCTCCCTCGATCGCCGAAACCCCAATACCGTCGGTCAGGTTCTTTGGCGAT
454 GCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGATGAT
* *
20028853 GCTCCAACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTG
519 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * **
20028918 CTGTCC-CAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGG
584 CTG-CCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCATTTGCTTAGACTGGG
* * *
20028982 AATGAACTCCGTATGCCTAAGTCAATCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGAAGG
648 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
* ** * *
20029047 CCAAGATGCAG-AAGCTGGGGATCGACTGGGTCCCACTCTGC--G-TG------CTG-T-CGTAA
713 GCGGGATGC-GCAAGCCGGGGATCGACTGGGTCCCCCTCTGCATGCTGCTAATCCTGCTGCGTAA
* * * * * *
20029100 CCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCGACCGACGAAATG
777 CCCTCAGTCCGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
20029165 AGCGGGCGGGCGGGCA-C-T---TA--TCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
842 AGCGGGCGGGCGGGCAGCGTCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * **
20029217 ATCGATAGGGTGGTAGGTGGGTTTAGGCACTTCTTCATATTTCTGCATGCCAATGAGATTTTTAT
1 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
*
20029282 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCAT
66 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
** * *
20029347 TTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTC-AGGATTTTTTCAAATTTTTTTGGAAG
131 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAG
* * *
20029411 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTTGCAAGCATAAAAAAATTC
195 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
20029475 AACTAAAAACCCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACAC
260 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
20029539 TTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGGGAGTTCTCG
325 TTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
20029604 AGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTA
390 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *** * *
20029668 CGCACACCCCCCCAGCCCCCCAGATCGTTAGAAACCCAATACCGCC-AGTCAGGTTCTCCGATGA
455 CGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGA-TCAGGTTCTCCGATGA
* * * *
20029732 TGCTCCGACGATGGTGCCCCGACAAAGAAAAATGTGGCACCAACAAATGCCCGAGCCCAGCATGT
518 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
*
20029797 GCTGCCGCAACCCTCGGTCCGG-TCTGATCTTAGACTGGGAATGAACT--ATGTATGCTTAGACT
583 GCTGCCGCAACCCTCGATCCGGTTC-GATCTTAGACTGGGAATGAACTCCAT-T-TGCTTAGACT
* * *
20029859 AGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGA
645 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGA
* * ** * *
20029924 GGGGCGGGATGCGTAAGCCGGGGATCGGCTGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCCA
710 GGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCATGCTGCTAATCCTGCTG-CG
* **
20029989 TAACCCTCAGTCCGGTTCAATCTTAGACTTGGAATTCAC-CACGTATGCCTAAGCCAACCGACGA
774 TAACCCTCAGTCCGGTTCAATCTTAGACTGGGAATGAACTC-CGTATGCCTAAGCCAACCGACGA
* * * * *
20030053 AACGACCGGGCGGGCGGAC-GGGT-ACTACGCCGGCCAGAGAGACGGGATCCGCAAGCCGTGG
838 AACGAGCGGGCGGGCGGGCAGCGTCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
20030114 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
1 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
* * **
20030179 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGGCGACTTGT
66 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
**
20030244 TTTCTATTTTTCACGATTTTTGAAA-TGTTTT-C----C-AG---------------TTC--AA-
131 TTTCTATTTTTCACGATTTTCAAAACT-TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
*
20030284 GA--TTT----------TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAACAAATTC
195 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
20030337 AGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACAC
260 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
20030402 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
325 TTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
20030467 AGGTTTGATGAGGGATAAGGGGGACAATATAAGGGCCAAGTACCAGCATCCATTGCACATCATGT
390 AGGTTTGATGAGGGAT-AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * *
20030532 GCGCACACACCCCCCGGCCCCTCCGATCGCCGAAACCCTAATGTCG--G-TCAAGTTCTCCGTTG
454 GCG--CACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGATG
* ** * * *
20030594 ATGCTCCGGCGATTATGCCCC-AAGAAGAGAAATGCGGCA-CAGCACATGCCCGAGCCCAGTATG
517 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * * * *
20030657 TGCTGCCACAACCCTCGGTTCGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
582 TGCTGCCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCATTTGCTTAGACTGG
* * * * * *
20030722 GAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCATACGGGCGCTCAGCCGGCCGGAGG
647 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGG
* * * * ** * * *
20030787 GGCGGGATGCACAAGCCGGAGATTGA-TCGGTTCCCCCTCTGCATGCTATTGATCTTGCTGCTGC
712 GGCGGGATGCGCAAGCCGGGGATCGACT-GGGTCCCCCTCTGCATGCTGCTAATCCTGCTGC-GT
* * * * * * *
20030851 AACCCTCGGTCTGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTATGCTAACCGACAAAA
775 AACCCTCAGTCCGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * * * * *
20030916 CGAGCGAGCGGGCGAGC-G-GGCACTACGCCGGCCAGAGACACGAGATTCGTAAGCCGTGG
840 CGAGCGGGCGGGCGGGCAGCGTCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
20030975 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
1 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
* * * * * * * *
20031040 GGCTTGTAAATTCATACAACGGTCACTTAAGCCTTGATGTTAAGTTTCATGGCAAGATGAGTCGT
66 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
** * ***
20031105 TTTCTATTTTTCACGATTTTCAAAACTTTGAACGGTTCGGGATTTTTTAAAATTTTTTTTAAAGG
131 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* ** * * *
20031170 AGTTTTGGCCCAAAACTTTATAGACTTGATCATTGTATTTTTTGTTGGCATGCCCAAAAAAATTC
196 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTC
* * * *
20031235 AGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAGAAAGTATCCCCATTTCAGACAC
260 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * * *
20031300 CTTAATTGCTACTAGCAGCAAACCTGTAAAATCTCAATTACTCTTTAAGGGGGTGTGAATTCTCG
325 TTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
20031365 AGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTG
390 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
20031430 CGCACACCACCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAAGTTCTCCGGTGATG
455 CGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGATGATG
* * * *
20031494 CTCCGACGATGGTGCCCCAATGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGC
520 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * *
20031559 TGCCGTAACCCTCGAT-CTGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTATACTGGGA
585 TGCCGCAACCCTCGATCCGGTTC-GATCTTAGACTGGGAATGAACTCCATTTGCTTAGACTGGGA
* * ** *
20031623 ATGAACTCTGTATGCCTAAGCCAACTGATGAAACGAGCAG-GCGGGTG
649 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-GTGCGGGTG
20031670 GGCGGGCGGG
Statistics
Matches: 5297, Mismatches: 601, Indels: 263
0.86 0.10 0.04
Matches are distributed among these distances:
860 3 0.00
861 450 0.08
862 81 0.02
863 124 0.02
864 1 0.00
865 44 0.01
866 27 0.01
867 5 0.00
871 3 0.00
873 2 0.00
874 2 0.00
876 2 0.00
878 1 0.00
879 51 0.01
880 331 0.06
881 333 0.06
882 3 0.00
883 4 0.00
884 2 0.00
885 3 0.00
886 72 0.01
887 3 0.00
888 131 0.02
889 316 0.06
890 205 0.04
891 43 0.01
892 74 0.01
893 1 0.00
894 25 0.00
895 15 0.00
896 4 0.00
897 275 0.05
898 627 0.12
899 1142 0.22
900 11 0.00
901 95 0.02
902 326 0.06
903 460 0.09
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGATGATGC
TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
GCCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCATTTGCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCG
GGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCATGCTGCTAATCCTGCTGCGTAACCCT
CAGTCCGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
GGCGGGCGGGCAGCGTCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
Found at i:20027194 original size:26 final size:26
Alignment explanation
Indices: 20027142--20027203 Score: 74
Period size: 26 Copynumber: 2.5 Consensus size: 26
20027132 CTCGATCCGG
20027142 TCCA-ATG-TTAGACTGGGAAAGAAC
1 TCCATATGCTTAGACTGGGAAAGAAC
* * *
20027166 TCCATTTGCTTAGACTGGGAATGAGC
1 TCCATATGCTTAGACTGGGAAAGAAC
*
20027192 TCCGTATGCTTA
1 TCCATATGCTTA
20027204 AGTCAACCCA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 4 0.13
25 2 0.06
26 25 0.81
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (26 bp):
TCCATATGCTTAGACTGGGAAAGAAC
Found at i:20028097 original size:26 final size:26
Alignment explanation
Indices: 20028047--20028099 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20028037 CCGGTCTGAT
* * *
20028047 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTAGGAATAAACTACGTATG
*
20028073 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTACGTATG
20028099 C
1 C
20028100 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTACGTATG
Found at i:20028974 original size:26 final size:26
Alignment explanation
Indices: 20028945--20028994 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
20028935 CCGGTTTGAT
20028945 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
20028971 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
20028995 TGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:20029875 original size:26 final size:26
Alignment explanation
Indices: 20029825--20029877 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20029815 CCGGTCTGAT
* * *
20029825 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTAGGAATAAACTACGTATG
*
20029851 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTACGTATG
20029877 C
1 C
20029878 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTACGTATG
Found at i:20030722 original size:26 final size:26
Alignment explanation
Indices: 20030686--20030738 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20030676 TCGGTCCTAT
20030686 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20030712 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20030738 C
1 C
20030739 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20032381 original size:26 final size:26
Alignment explanation
Indices: 20032330--20032382 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20032320 CCAGTCCGAT
* *
20032330 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
*
20032356 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
20032382 C
1 C
20032383 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:20033277 original size:26 final size:26
Alignment explanation
Indices: 20033226--20033278 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20033216 CCATTCCGAT
*
20033226 CTTAGACTAGGAATGAACAACGTATG
1 CTTAGACTAGGAATGAACAACATATG
* **
20033252 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACAACATATG
20033278 C
1 C
20033279 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACAACATATG
Found at i:20037490 original size:26 final size:26
Alignment explanation
Indices: 20037440--20037491 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20037430 CGGTCCAATA
*
20037440 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
20037466 TTAGACTGGGAATGAACTCTATATGC
1 TTAGACTGGGAATGAACTCCATATGC
20037492 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:20037659 original size:26 final size:26
Alignment explanation
Indices: 20037623--20037674 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20037613 TCCATCTGAT
20037623 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20037649 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20037675 TCTATGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20037771 original size:184 final size:185
Alignment explanation
Indices: 20037410--20037834 Score: 498
Period size: 184 Copynumber: 2.3 Consensus size: 185
20037400 GCCCAGCATG
* * * *
20037410 TGCTGCCGCAACCCTCGGTC-CGGTCCAATATTAGACTGGGAATGAACTCCGTATGCTTAGACTG
1 TGCTACCGCAACCCTCAGTCTC-ATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* *
20037474 GGAATGAACTCTATATGCCTAGGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAC
65 GGAATGAACTCCATATGCCTAGGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCAGAC
* * * * * * * *
20037539 GGGCGGGATGCGCAAGCCGGGGATTAACCAGGTCCTCTTTTGCGTGCTACCGATCC
130 GGGCGGGATGAGCAAGCCGAGAATCAACCAGGTCCCCCTCTACGTGCTACCGATCC
* * ** *
20037595 TGTTACCGTAACCCTC-GATC-CATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTATACTG
1 TGCTACCGCAACCCTCAG-TCTCATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * *
20037658 GGAATGAACTCCGTATGTCTATGTCAACCCATGAAACGAGCGTGCGGGCACTCAACCGGCCAG-C
65 GGAATGAACTCCATATGCCTAGGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCAGAC
* * * * *
20037722 GGGTCGGGATGAGCAAGTCGATAATCGACCGGGTCCCCCTCTACGTGCTATCGATCC
130 GGG-CGGGATGAGCAAGCCGAGAATCAACCAGGTCCCCCTCTACGTGCTACCGATCC
* * **
20037779 TGCTGCTGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
1 TGCTACCGCAACCCTCAGTCTCATCCAATCTTAGACTGGGAATGAACTCCGTATGC
20037835 CTAAGCCAAC
Statistics
Matches: 200, Mismatches: 36, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
183 4 0.02
184 148 0.74
185 48 0.24
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (185 bp):
TGCTACCGCAACCCTCAGTCTCATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCATATGCCTAGGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCAGACG
GGCGGGATGAGCAAGCCGAGAATCAACCAGGTCCCCCTCTACGTGCTACCGATCC
Found at i:20038571 original size:26 final size:26
Alignment explanation
Indices: 20038521--20038573 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20038511 CTGGTCCGAT
* *
20038521 CTTAGACTGGGAATGAGCTCTGTATG
1 CTTAGACTGGCAATGAACTCTGTATG
20038547 CTTAGACTGGCAATGAACT-TCGTATG
1 CTTAGACTGGCAATGAACTCT-GTATG
20038573 C
1 C
20038574 CTATGTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCTGTATG
Found at i:20039432 original size:26 final size:26
Alignment explanation
Indices: 20039403--20039455 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20039393 CTGATCAAAT
* *
20039403 CTTAGATTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
20039429 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
20039455 C
1 C
20039456 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:20041190 original size:26 final size:26
Alignment explanation
Indices: 20041161--20041213 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20041151 CCGGTCTGAT
20041161 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20041187 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20041213 C
1 C
20041214 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20042086 original size:26 final size:26
Alignment explanation
Indices: 20042057--20042109 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20042047 CCGGTCCGAT
* *
20042057 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGAAATGAACTCCGTATG
*
20042083 CTTAGAATGGAAATGAACTTCGTATG
1 CTTAGAATGGAAATGAACTCCGTATG
20042109 C
1 C
20042110 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGAAATGAACTCCGTATG
Found at i:20042594 original size:887 final size:883
Alignment explanation
Indices: 20040286--20044061 Score: 5361
Period size: 887 Copynumber: 4.2 Consensus size: 883
20040276 TTGGTCCGAT
* * *
20040286 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGTGAAACGAGCGTACGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * ** *
20040351 CGGCCAGAGGGGCAGGATGCGA-TAGCCGGGGATTGGCCAGGTCCCCCTCTCCGTGCTGCCGATC
66 CGGCCAGA--GG--GGATGC-ACAAGCCGGGGATCGACTGGGTCCCCCTCTACGTGCTGCCGATC
* * * **
20040415 CTACTGCCGCAACCATCGATCTGGTCCGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCA
126 CTACTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
20040480 ACCGACGAAACGACCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGTAAACC
191 ACCGACGAAACGA---G-C--G-GAGCGGGCACTACGCCGACCAGAGAGACGAGATGCGTAAGCC
* *
20040545 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCTTGCCAATGCCATTT
249 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
20040610 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGATGAC
314 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGAC
* *
20040675 TCGTTTTTTATTTTTCACGATTCATGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
379 TCGTTTTCTATTTTTCACGATTCTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
**
20040740 AAGGAGTTTTGTTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
444 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * *
20040805 TTCAGCTAAAAAC-TCAAGGTGTACAAGATTTTATGACCATTGGAAAAAAGTGTCCCCATTTCGG
509 TTCAGCTAAAAACTTGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
20040869 ACACTTTAATTGCTACCGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
573 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
20040934 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCA
638 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
20040999 TGTGCGCACACCCCCCATGGCCCCCTCGATCGCCGGAACCCCAATGCCGACGGTCAGGTTCTTCG
703 TGTGCGCACACCCCCC--GGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC-TC-
* * * *
20041064 GCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCTGAGCCTAGC
764 -CG-TGCT-CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* *
20041129 ATGTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
826 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
20041187 CTTAGAGTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * *
20041252 CGGCCAGAGGGGCGAGATGCGCAAGCCAAGGATCG-GTCGGGTCCCCCTCTATGTACTACCTATC
66 CGGCCAGA--GG-G-GATGCACAAGCCGGGGATCGACT-GGGTCCCCCTCTACGTGCTGCCGATC
*
20041316 CTGCTGCCGCAACCCTCGATCCGGTCTGATCTTCA-ACTGGGAATGAACTCCGTATGCCTAAGCC
126 CTACTGCCGCAACCCTCGATCCGGTCTGATCTT-AGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
20041380 AACCGACGAAACGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGTAAGCCGTG
190 AACCGACGAAACGAGC--G-GAGCGGGCACTACGCCGACCAGAGAGACGAGATGCGTAAGCCGTG
* *
20041445 GATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTA
252 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
20041510 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCG
317 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCG
* * * *
20041575 TTTTCTATTTTTCACAATTCTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTCTCGAAAG
382 TTTTCTATTTTTCACGATTCTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* *
20041640 GAGTATTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
447 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * * *
20041705 AGCTAAAAACTTGAAGTGTAGAAGATTTTGTGACTATTTGAAAGAAGTGTCCCCATTACAGACAC
512 AGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
20041770 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCTCG
577 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
20041835 AGGTTTGATGAGGAATGGGGGGCCAATATGAA-GGCCAAGTACTAGCACCCATCGCACATCATGT
642 AGGTTTGATGAGGGATAGGGGGCCAATAT-AAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
20041899 GCGCACACCCCGTCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGACAGGTTCTCCGACGA
706 GCGCACACCCC-CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CG-
*
20041964 TGCTCAGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGT
766 TGCTC-GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
*
20042029 GCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
830 GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * **
20042083 CTTAGAATGGAAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* *
20042148 CGGCCAGA-GGGATGCACAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGTCGATCCTACT
66 CGGCCAGAGGGGATGCACAAGCCGGGGATCGACTGGGTCCCCCTCTACGTGCTGCCGATCCTACT
* *
20042212 GCCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCGAA-CG
131 GCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-AACCG
* *
20042276 ACGAAACGAGCGGA-CGGGCACTACGTCGACCAGAGAGACGAGATGCGCAAGCCGTGGATCGATA
195 ACGAAACGAGCGGAGCGGGCACTACGCCGACCAGAGAGACGAGATGCGTAAGCCGTGGATCGATA
* * * * *
20042340 GGGTGGTAGGTGTGTTTAAGCACATCTTCATATTTTTACGTGCCAATGCCATTTTTATGGCTTGT
260 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* * *
20042405 AAATTCATACAATGGTCCCTTAATCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
325 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTAT
* * *
20042470 TTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
390 TTTTCACGATTCTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * * * *
20042535 GCCCCAAACATGGTAGACGTGATCCTTGTAATTTTGTTGGCGTGCATAAAACAATTCAGCTAAAA
455 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* * *
20042600 ACTCGAAGTGTACGAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGG
520 ACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
20042665 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTTTCGAGGTTTGA
585 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
*
20042730 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCTTCGCACATCATGTGCGCACACC
650 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * *
20042795 CCCCGGCCCCCCCGATCGTCGGAACCCCGATGCCGTCAGTCAGGTTCTCCG-G-T----GATGGT
715 CCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGTGCTCGGCGATGGT
** * * *
20042854 GCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTC
780 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* *
20042919 GGTCCGGTCTGATCTTTGACTGGGAATGAACTCCGTATG
845 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
20042958 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * *
20043023 CGACCAGAGGGGCGGGATGCGA-TAGCCGGGGATCGGCCAGGTCCCCCTCTCCGTGCTACCGATC
66 CGGCCAGA---G-GGGATGC-ACAAGCCGGGGATCGACTGGGTCCCCCTCTACGTGCTGCCGATC
* * * ** *
20043087 CTACTGCCGCAACCATCGATCTGGTCCGATCTTAGACTACGAATGAACTCTGTATGCCTAAGCCA
126 CTACTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
20043152 ACCGACGAAACGACCGGACGGGCAGGCGGGCACTACGCCGACCAGAGAGACGAGATGCGTAAGTC
191 ACCGACGAAACGA---G-C-GG-A-GCGGGCACTACGCCGACCAGAGAGACGAGATGCGTAAGCC
*
20043217 GTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
249 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
20043282 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGAC
314 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGAC
* * *
20043347 TCGTTTTCTA-TTTTCACGATTTTTGAAACTTTTTACTGTTTGGGATTTTTTAAAATTTTTAT-G
379 TCGTTTTCTATTTTTCACGATTCTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT-TCG
* * *
20043410 GAGGGAGTTTTGGCCCCAAACTTGGTAGACGTTATCCTTGTATTTTTGTTGGCATGCATAAAAAA
443 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
20043475 ATTCAGCTAAAAAATAGGAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAG
508 ATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
20043540 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
573 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
20043605 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
638 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
20043670 TGTGCGCACACCCCCTGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGG-T-T-C-T-
703 TGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGTG
* * *
20043730 C-CGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGAATGTGCT
768 CTCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * * * *
20043794 ACCGCAACCCTCGGTCTGATTCGACCTTAGTCTGGGAATGAACTCCGCATG
833 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
20043845 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
** * *
20043910 CGGCCAGAGGGGCGGGATGTGCAAGTCGGGGATCGA-TCGGGTCCCCCTCTACATGCTGCCGATC
66 CGGCCAGA---G-GGGATGCACAAGCCGGGGATCGACT-GGGTCCCCCTCTACGTGCTGCCGATC
* * * *
20043974 CTATTGCCGCAACCCTCGATCCTGTCTAATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCA
126 CTACTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
20044039 ACCGACGAAACAAGC-GAGCGGGC
191 ACCGACGAAACGAGCGGAGCGGGC
20044062 GTACGGGCAG
Statistics
Matches: 2597, Mismatches: 241, Indels: 96
0.89 0.08 0.03
Matches are distributed among these distances:
875 166 0.06
879 8 0.00
880 111 0.04
881 3 0.00
883 4 0.00
884 3 0.00
885 4 0.00
886 44 0.02
887 1080 0.42
888 170 0.07
889 1 0.00
890 1 0.00
891 109 0.04
892 4 0.00
893 1 0.00
895 2 0.00
896 224 0.09
897 476 0.18
898 7 0.00
900 1 0.00
901 177 0.07
902 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (883 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGATGCACAAGCCGGGGATCGACTGGGTCCCCCTCTACGTGCTGCCGATCCTACT
GCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAACGAGCGGAGCGGGCACTACGCCGACCAGAGAGACGAGATGCGTAAGCCGTGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATT
TTTCACGATTCTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGTGCTCGGCGATGGTG
CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:20043855 original size:26 final size:26
Alignment explanation
Indices: 20043819--20043871 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20043809 CTGATTCGAC
*
20043819 CTTAGTCTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
20043845 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
20043871 C
1 C
20043872 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:20044161 original size:154 final size:158
Alignment explanation
Indices: 20043845--20044208 Score: 434
Period size: 154 Copynumber: 2.3 Consensus size: 158
20043835 ACTCCGCATG
* * * *
20043845 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGCTCA-C
** * ** * * *
20043910 CGGCCAGAGGGGCGGGATGTGCAAGTCGGGGATCGATCGGGTCCCCCTCTACATGCTGCCGATCC
65 CGGCCAGAGCAGAGGGATGCACAAGCCAGGGATCGATCAGGTCCCCCTCTACATGCTGCCGATCC
* * *
20043975 TATTGCCGCAACCCTCGATCCTGTCTAAT
130 TACTACCGCAACCCTCGATCCGGTCTAAT
* *
20044004 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGAGCGGGCG-T-A-C
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGCTCACC
* * * *
20044066 GGGCAG-GCAGAGGGATGCACAAGCCAGGGATCG-GCTAGGTCCCCCTCTACGTGCTGCCGATCT
66 GGCCAGAGCAGAGGGATGCACAAGCCAGGGATCGATC-AGGTCCCCCTCTACATGCTGCCGATCC
* * *
20044129 TACTATCGTAACCCTCGATCCGGTCTGAT
130 TACTACCGCAACCCTCGATCCGGTCTAAT
*
20044158 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCTGAA-CGACGAAACGAGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGC-CAACCGACGAAACGAGCG
20044209 TGCGAGCGGG
Statistics
Matches: 176, Mismatches: 27, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
153 1 0.01
154 112 0.64
155 8 0.05
157 1 0.01
158 1 0.01
159 53 0.30
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGCTCACC
GGCCAGAGCAGAGGGATGCACAAGCCAGGGATCGATCAGGTCCCCCTCTACATGCTGCCGATCCT
ACTACCGCAACCCTCGATCCGGTCTAAT
Found at i:20044904 original size:26 final size:26
Alignment explanation
Indices: 20044866--20044918 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20044856 TCGGTCCGAT
* * *
20044866 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAAGGAACTCCGTATG
20044892 CTTAGACTAGGAAGGAACTCCGTATG
1 CTTAGACTAGGAAGGAACTCCGTATG
20044918 C
1 C
20044919 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAAGGAACTCCGTATG
Found at i:20045787 original size:27 final size:26
Alignment explanation
Indices: 20045757--20045810 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 26
20045747 CCGGTCCGAT
20045757 CTTAGA-TGGGGAATGAACATCCGTATG
1 CTTAGACT-GGGAATGAAC-TCCGTATG
20045784 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20045810 C
1 C
20045811 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 9 0.35
27 16 0.62
28 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20046481 original size:887 final size:888
Alignment explanation
Indices: 20044004--20046735 Score: 3362
Period size: 893 Copynumber: 3.1 Consensus size: 888
20043994 CCTGTCTAAT
* * * * * *
20044004 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGAGCGGGCG-T-A--
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * *
20044065 CGGGCAG-GCAGAGGGATGCACAAGCCAGGGATCGGCTA-GGTCCCCCTCTACGTGCTGCCGATC
66 CGGCCAGAGGGGCGAGATGCACAAGCCGGGGATCGGCCAGGGTCCCCCTCTACGTGCTGCCGATC
* ** * *
20044128 TTACTATCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTG
131 CTACTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC-C
* * * *
20044193 AA-CGACGAAACGAGCGTGCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
195 AACCGACGAAACGA-----CGA-CGGGCGGGCGGGCACTACGCCGACCAGAGAGACGAGATGCGT
**
20044257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGAAACATCTTCATATTTCTGCATGCCAATGC
254 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * *
20044322 CATTTTTATGGCTTGTAAATTCATACACTGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
319 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGG
* * ** * *
20044387 ATGACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTT
384 ACGACTCGTTTTCTATTTTTCACAATTTTAGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * *
20044452 TTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
449 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
20044517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCTATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
20044582 TCAGACACTTTACTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * * *
20044647 AGTGCTCCAGCTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAATACCAGCACCCATCGCAC
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * * *
20044712 ATCATGTGCGCACACCCCCCCGGCGTCTCCGATCGCCAGAAACCCAATGCCGTCGGTCAGGTTCT
709 ATCATGTGCGCACA-CCCCCTGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT
*
20044777 CCG-GCGATGGTGCCCCCG-CGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGC
773 CCGCGCGATGGTG-CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
20044840 TGCCGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATG
837 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
20044892 CTTAGACTAGGAAGGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTACGGGCGTTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
20044957 CGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCTTCTGCATGCTGTCGATC
66 CGGCCAGAGGGGCGAGATGCACAAGCCGGGGATCGGCCAGGGTCCCCCTCTACGTGCTGCCGATC
* * ** * * * * *
20045021 TTGCCACTGCAACCCTC-AGTTCGGTCCGATCTTAGACTAGGAACGAACTCCGTATGCCTAAGCC
131 CTACTGCCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
20045085 AACCGATGAAATGAGGGGGCGAACGGGCGGGCGGGCTCTACGCCGGCCAGAGAGACTG-GATGCG
195 AACCGACGAAACGA-----CG-ACGGGCGGGCGGGCACTACGCCGACCAGAGAGAC-GAGATGCG
* *** * * * * *
20045149 TAAGTCGTGGATCGATATTTTGGAAAGTGGGTTTAGGCACATGTTCATATTTCTACATGCCAATT
253 TAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
20045214 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
318 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAG
* * * * * **
20045279 GACGACTCATTTTTTAATTTTAACGATTTTCCAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
383 GACGACTCGTTTTCTATTTTTCACAATTTTAGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * *
20045344 TTTCGGAAGGATTTTTGGCCCCAAACTTGGTTGACATGATCCTTGTATTTTTGTTGGCATGCACA
448 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
20045409 AAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
513 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
20045474 TTCAGACACTTTATTGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCCCTTTAAAGGGGTGT
578 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * * ** *
20045539 GAGTGCTTGAGCTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAAAACCAGCACCCATCACA
643 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* ** * * * * * * *
20045604 CATCATGTGCGCTCACCCCCTGGCATCCTCGATCGTCGAAAACTCAATGCCGCCTGTCAGGTTCT
708 CATCATGTGCGCACACCCCCTGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * *
20045669 -CGAG-GATGGTGCCCCCACGAAGAAAAATGCGGCGCCAGCACATGCCTGAGCCTAGCATGTGCT
773 CCGCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * *
20045732 GTCGCAACCGTCTGTCCGGTCCGATCTTAGA-TGGGGAATGAACATCCGTATG
838 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACT-GGGAATGAAC-TCCGTATG
* * *
20045784 CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* ** * ** *
20045849 CGGCCAGAGGGGCGAGATGCACAAGCCAGGGATCGATC-GTGTCCCCCTCTGTGTGCTGCCAATC
66 CGGCCAGAGGGGCGAGATGCACAAGCCGGGGATCGGCCAGGGTCCCCCTCTACGTGCTGCCGATC
* * * *
20045913 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCA
131 CTACTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
20045978 ACCGACGAAACGAGCGAACGGGCGGGCGGGCACTACGTCAACCAGAGAGACGGGATGCGCAAGCC
196 ACCGACGAAACGA-CG-ACGGGCGGGCGGGCACTACGCCGACCAGAGAGACGAGATGCGTAAGCC
* *
20046043 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATACCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
20046108 TTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGAC
* * *
20046173 TCGTTTTCTATTTTTCACAATTTTAGAAGCTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGG
389 TCGTTTTCTATTTTTCACAATTTTAGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * * *
20046238 AATGAGTTTTGGCCCC-AACTTGGTAGTCGTGATCCTTGTATTTTTTTTAGCATGCATAAAAAAA
454 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
20046302 TTCAGCTAAAATCTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
20046367 CACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTC
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
20046432 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCACGTACCAGCACCCA--GCGCATCAT
649 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * * *
20046495 GTGCGCTCACCCCCCGG-CCCCCCGATCGTCGGAACACCAATGCCGCCGATCATGTTCTCCGGCG
714 GTGCGCACACCCCCTGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--C-
** *
20046559 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCTACACCAGCACATGCCTGAGCCCAGCATG
775 --G---CG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * *
20046624 TGCTGCCGCAACCCTCAGTCTGGTTCGATCATAGACTGGGAATGAACTCCGCATG
834 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
20046679 TTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
20046736 TGGGCGGGTT
Statistics
Matches: 1606, Mismatches: 209, Indels: 51
0.86 0.11 0.03
Matches are distributed among these distances:
884 31 0.02
885 23 0.01
887 211 0.13
888 283 0.18
889 1 0.00
890 6 0.00
891 89 0.06
892 231 0.14
893 576 0.36
894 3 0.00
895 62 0.04
896 89 0.06
897 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGAGATGCACAAGCCGGGGATCGGCCAGGGTCCCCCTCTACGTGCTGCCGATC
CTACTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAACGACGACGGGCGGGCGGGCACTACGCCGACCAGAGAGACGAGATGCGTAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTC
GTTTTCTATTTTTCACAATTTTAGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCTGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCGCGA
TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:20048791 original size:26 final size:26
Alignment explanation
Indices: 20048755--20048804 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20048745 CCGGTCAGTT
*
20048755 CTTAGACTGGGAATGAACTTCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
20048781 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
20048805 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:20049679 original size:26 final size:26
Alignment explanation
Indices: 20049643--20049695 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20049633 TCGGTTTGAT
20049643 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20049669 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20049695 C
1 C
20049696 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20050135 original size:25 final size:26
Alignment explanation
Indices: 20050081--20050135 Score: 60
Period size: 25 Copynumber: 2.1 Consensus size: 26
20050071 TTTTTCATGA
*
20050081 TTTTTAAAACTTTTTGTGGTACGAGAT
1 TTTTTAAAAC-TTTTGTGGAACGAGAT
*
20050108 TTTTTAAAA-TTTTGTCGGAAGGAG-T
1 TTTTTAAAACTTTTGT-GGAACGAGAT
20050133 TTT
1 TTT
20050136 GGCCCTAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
25 10 0.40
26 6 0.24
27 9 0.36
ACGTcount: A:0.25, C:0.05, G:0.20, T:0.49
Consensus pattern (26 bp):
TTTTTAAAACTTTTGTGGAACGAGAT
Found at i:20050219 original size:891 final size:888
Alignment explanation
Indices: 20048009--20055385 Score: 8778
Period size: 891 Copynumber: 8.3 Consensus size: 888
20047999 GTCAGAGGGG
* *
20048009 CCCCCTCTGCATGCTGCCAATCCTGCTG-TCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGA
1 CCCCCTCTGCGTGCTGCCGATCCTGCTGCT-GCAACCCTCGATCCGGTCTGATCTTAGACTGGGA
* * *
20048073 ATGAACTCTGTGTTCCTAAGCCAACCGACG--A-AA-----C-GA--GCGGGCGGGCACTACGCC
65 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGACGGCGGGCGGGCACTACGCC
** *
20048127 GGCCAGAGAGACGGGATGCTTAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
130 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
20048192 CATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATCCATACAATGGTCCCTTAAACCTT
195 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
*
20048257 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAATCTTTTT-CGG
260 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
*
20048321 TTC-AGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
325 TTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * *
20048385 GTATTTTTTTTGGCATGCCCAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
389 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
20048450 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCTGCAAACCTGTAAAATCTC
454 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * *
20048515 TAATGCTCTTTAAGGGGGTGTGAGCTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGAC
519 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * * *
20048579 CAAGTACCAGCGCCCATCGCACATCTTGTGCGCACACCCCCCAGGCCCCCTCGATTGCCGGAACC
584 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCGTCGGAACC
* * * * * * *
20048644 CTAATGCCGCCGGTCAGGTTCTCCGATGATGGTGGCCCGGCGAAGAAAAATGTGGCCCCAGCACA
648 CCAATGCCGTCGGTCAGGTTCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* * * * *
20048709 TGCCCGTGCCCAAG-ATGTGCTGCCACAACCCTCGGTCCGGTCAGTTCTTAGACTGGGAATGAAC
713 TGCCCGAGCCC-AGCATGTGCTACCGCAA-CCTC-GTTCGGT--GATCTTAGACTGGGAATGAAC
* * * *
20048773 TTCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGG
773 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * ** *
20048838 CGCTCA-ATCGGCCGGAGGGGCGAGATGCACAAGCCGACGATCAAACGGGT
838 CGCTCAGCTCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGT
* * *
20048888 CCCCTTCTGCGTGCTGCTGATCCTGCTG-TCGCAACCCTC-AGTCCGGTCTGATCTTAGACTGAG
1 CCCCCTCTGCGTGCTGCCGATCCTGCTGCT-GCAACCCTCGA-TCCGGTCTGATCTTAGACTGGG
* * *
20048951 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--A-GGCGGACGGGCACTACGT
64 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGACGGCGGGCGGGCACTACGC
20049013 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
129 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*** ** **
20049078 TCATATTTCTATGTGCCAATGCCATTTTTATCCCTTGTAAATTCATACAATGGTCATTTAAGCCT
194 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * ** * *
20049143 TCAAGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATAAATTTTGAAACTTTTTATG
259 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
* * * * *
20049208 GTTCGGGATTTTTTAAAATTTTTTTGGATGGTGTTTTGGCCCCAAACTTGGTATACGTGATCCTT
324 GTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * * *
20049273 GCATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACC
389 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * *
20049338 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACTTGT-AAGTCTC
454 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
20049402 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGC
519 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
*
20049467 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCCGGCCCCCCGACCGTCGGAACC
584 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CCGGCCCCCCGATCGTCGGAACC
* *
20049532 CCAATGCCGTCGGTCAGGTTCTCCGGTGATGGTGCCCTGATGAAGAAAAATGCGGCACCAGCACA
648 CCAATGCCGTCGGTCAGGTTCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
**
20049597 TGCCCGAGCCCAGCATGTGCTACCAAAACCGTCGGTTCGGTTTGATCTTAGACTGGGAATGAACT
713 TGCCCGAGCCCAGCATGTGCTACCGCAACC-TC-GTTCGG--TGATCTTAGACTGGGAATGAACT
* * * *
20049662 CCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGTGTACGGGC
774 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * *** **
20049727 GCTCAGCT-GACTAGAGGAGCAGGATGCGCAAGTCGAGGATCGGTCGACT
839 GCTCAGCTCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGT
* * * * * * **
20049776 -CCTCTCTGTGTGTTGCCAATCCTACTGCTGCATCCCTCGATCCAATCTGATCTTAGACTGGGAA
1 CCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAA
*
20049840 TGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGACGGACGGGCGGGCACTACACC
66 TGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGACGG-CGGGCGGGCACTACGCC
* *
20049905 AGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTT
130 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
*
20049970 CATATTTCT-CTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
195 CATATTTCTGC-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * **
20050034 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTAAAACTTTTTGTG
259 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
* * * *
20050099 GTACGAGATTTTTTAAAATTTTGTCGGAAGGAGTTTTGGCCCTAAA-TATTGTAGACGTGATCCT
324 GTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT-TGGTAGACGTGATCCT
* * *
20050163 TGTATTTTTTTTTGGCATGCAC-AAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTCA
388 TGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
20050227 CCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATG
452 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * * * *
20050292 TCAAATGCTATTTAAAGGGGTGTGAGTTCTCAAGATTTGATGAGGGATTGGGGGCCAATATAAGG
517 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
*
20050357 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCTCCCGGCCCCCTGATCGTCGGA
582 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCC-CCCGGCCCCCCGATCGTCGGA
* *
20050422 ACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGATTGTGCCCCGACGAAGAAAAAT
645 ACCCCAATGCCGTCGGTCAGGTTCT-C--CG--G-T-----GATGGTGCCCCGACGAAGAAAAAT
* *
20050487 GCGGCACCAGCACATGCCCGAGCCCAAG-ATGTGCTGCCGCAACCCTCTGTCCGGTCCGATCTTA
699 GCGGCACCAGCACATGCCCGAGCCC-AGCATGTGCTACCGCAA-CCTC-GTTCGGT--GATCTTA
* *
20050551 GACTGGGAATGAACTCCGT-TGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTTAACCCACGA
759 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* ** *
20050615 AACGAGCGTGCGGGCGCTCAAC-CGACCAGAGGGGCGGGATGCGCAAAACGAGGATCAACCGGGT
824 AACGAGCGTGCGGGCGCTCAGCTCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGT
* * * *** * ** * * * ** * * *
20050679 CCCTCTCTGTGTGTTTTTGATCC-GAATGCCACATCCCTCGGTCCGATCCAATCTTAAACTAGAA
1 CCCCCTCTGCGTGCTGCCGATCCTG-CTGCTGCAACCCTCGATCCGGTCTGATCTTAGACTGGGA
* *
20050743 ATGAACTCCGTATGCCTAAGCCAACCGACGGAACGAGCGGGC-G--GGCGGGCGGGCACTACGCC
65 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGACGGCGGGCGGGCACTACGCC
*
20050805 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTT
130 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
*
20050870 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG-CCCTTAAGCCTT
195 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
*
20050934 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
260 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* ** *
20050999 TTC-AGGATTTTGTAAAATTTTTTCGGAAGGAGTTTTGG-CTAAAACCTTGGTAGATGTGATCCT
325 TTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA-CTTGGTAGACGTGATCCT
* * *
20051062 TGTATTTTTGTTGGCATGCACAAAAGAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGAA
388 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
20051127 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATAT
453 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
20051192 CAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
518 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
20051257 CCAAGTACCAGTA-CCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGAAACC
583 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACC
* * * * * * *
20051321 TCAATGTCGTCGGTTAGGTTCTCCGACGACGCTCCGACGATGGTGCCCAGACGAAGAGAATTACG
648 CCAATGCCGTCGGTCAGGTTCT-C--CG--G-T-----GATGGTGCCCCGACGAAGAAAAATGCG
* *
20051386 GCACCAGCACATGCCCGAGCCCAGCATGTGCTACTGCAACCTTCGGTCTGGTCCGATCTTAGACT
702 GCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACC-TCGTTC-GGT--GATCTTAGACT
* *
20051451 AGGAATGAACTCTGTATGCTTAGACTGGGAATGAATTCCATATGCTTGACTGGGAATGAACTTCG
763 GGGAATGAACTCCGTATGCTTAGACTGGGAATG--------A------AC------T---C--CG
* * * *
20051516 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAG-TCGGCCAGAGGGGCGGGATGCC
803 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTCGACCAGAGGGGCGGGATGCG
* *
20051580 CAAGTCGGGGATCGACCGGGT
868 CAAGCCGGGGATCAACCGGGT
* * ** * * * * * *
20051601 CTCCCTTTGCGTGCTGTTGATCCTGCTACCGTAACCCTC-AGTCCGATCCGATCTTAGACTGGGG
1 CCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGA
* * * * * *
20051665 ATGAACTCCGTATGCCTAAGCCAACTGATGAAATGAA-CGGGCGGGCGGGCGGGCGGGCAGTATG
65 ATGAACTCCGTATGCCTAAGCCAACCGACGAAA-CAAGCGGGCGGAC-GGCGGGCGGGCACTACG
* * * * *
20051729 TCGACCAGAGAGAAGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATC
128 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
20051794 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
193 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * * * **
20051859 TTCACGTGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAATTTCGAAACATTTTGT
258 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * *
20051924 GGTTCGGGATTTTTTGAAATTTTTTCGAAAGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCT
323 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* *
20051988 TGTATTTTTGTTGGCATGCACAAAAAAATTTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTCA
388 TGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
20052053 CCCTTTGAAAAAAGTGTCCCCATTTCAGACAATTTAATGGCTACTGGCAGCAAACCTGTAAAATC
452 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * * *
20052118 TTAAATGCCCTTTAAGGGGGAGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGCCAATATAGGGG
517 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT---G---A-GGG---ATA-GGGGG
* *
20052183 CCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACA-CCCCTCGGCCCCCCG
571 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCG
* * **
20052247 ATCGTCGGAACCTCAATGTCGCCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGATA
636 ATCGTCGGAACCCCAA--T-GCC-GTC-GG---TCAGGT--T-CTCCGGTGATGGTGCCCCGACG
* * *
20052312 AAGAAAAGTACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACC-C--TC--AG-T
690 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCTCGTTCGGTGAT
*
20052371 C-----CT----AT---CT--G-AT-CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCC
755 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * ****
20052420 ACGAAATGAGCGTACGGGCACTCAG-TCGGCCAGAGAGGTGGGATGCGCAAGCCGGGGATGGGTC
820 ACGAAACGAGCGTGCGGGCGCTCAGCTCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACC
20052484 GGGT
885 GGGT
* * * * * * * *
20052488 CCCCCTCTGCATGCTACCAATCATGCT-ATCGTAACCCTCTG-TCTGGTCTGATCTTAGATTGGG
1 CCCCCTCTGCGTGCTGCCGATCCTGCTGCT-GCAACCCTC-GATCCGGTCTGATCTTAGACTGGG
* * *
20052551 AATGAACTTCGTATGCCTAAGGCAACCGACGAAACAAGCGGGCGGACAGGCGGACGGGCAGGCAC
64 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGG--A--CGG-CGGGCGGGCAC
** ** *
20052616 TACGCTAGCCAGAGAGACGGGATGCTTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
124 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
20052681 CATCTTCATGTTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAGACAATGGTCCCTTA
189 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
20052746 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTCTTTTTCATGATTTTTGAAACTTT
254 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * *
20052811 TT-CGGTTCGAGATTTTTTTAAATTTTTTCGAAAGGAGTTTTGACCCCAAACTTGGTAGACGTGG
319 TTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
*
20052875 TCCTTGTATTTTTGTTGGCATGCACTAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
384 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * *
20052940 TGTCCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTGGCTGCAAACCTGTAAA
449 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
20053005 ATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGATGAGGGATA---GG--------
514 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* ** * *
20053059 -GGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCTAGGCCCCCCCGATTGCCG
579 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCG
* * * * *
20053123 GAACCCTAATGCCGCCAGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGGCTCGACGAAGAAAA
643 GAACCCCAAT---GCC-GTC-GG---TCAGGT--T-CTCCGGTGATGGTGCCCCGACGAAGAAAA
* *
20053188 ATGCGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGCAACC-C--TC-G-G-TC-----C
697 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCTCGTTCGGTGATCTTAGAC
* * *
20053242 ---G---G---TCC-AAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAAT
762 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * *
20053296 GAGCGTGCGGGCGTTCAG-TCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAATCGGGT
827 GAGCGTGCGGGCGCTCAGCTCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGT
* * * * *
20053357 CCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTC-AGTCCGGTCCGATCTTAGACTGAGA
1 CCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGA
* * *
20053421 ATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAACGGGCGGGCGGGCGGCGGGCGGGCACTA
65 ATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AA---GCGGGCGGACGGCGGGCGGGCACTA
* * * * *
20053486 CGTCGGCCAGAAAGACGGGATGCGTAAGTCGTGGATCGATAGGGCGGTAGGTGGGTTTAGGCACA
126 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * * *
20053551 TCTTCTTTTTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAG
191 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* **
20053616 CCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTT
256 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * ** *
20053681 ACGGTTCGGGATTTTTTAAAATTTTTTTGGAAAGTTTTTTGGCCCCAAACTTGGCAGACGTGATC
321 ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
20053746 CTCGTATTTTTGTTGGCATGCAAAAAAAAATTCACCTAAAAACTCGAAGTGTACAAGATTTTGTG
386 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * * *
20053811 ACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGGTACTGGTAGCAAACTTGTAAAAT
451 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
20053876 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAAGAGGGATAGGGGGCCAATATAAG
516 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * *
20053941 AGCCAAGTACCAGCACCCATCGCCCATCATGTGCGCACACCCCCGCCGGCCCCCCAATCGCCGGA
581 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CCGGCCCCCCGATCGTCGGA
20054006 ACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
645 ACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* *
20054071 ACATGCCCGAGCCCAGCATGTGCTACCGCAACCGTCGATCTGGTTCGATCTTAGATTGGGAATGA
710 ACATGCCCGAGCCCAGCATGTGCTACCGCAACC-TCGTTC-GG-T-GATCTTAGACTGGGAATGA
* **
20054136 ACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAGCGTGCG
771 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * ** *
20054201 GGCACTCAGC-CGACCAGAGGGGCGGGATGCGCAAGACGGGGATCGGCTGGGT
836 GGCGCTCAGCTCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGT
* * * * * *
20054253 CCCTCTCTGTGTGCTGCCAATCCTACTG-TCGCAACCCTCGATCAGATCTGATCTTAGACTGGGA
1 CCCCCTCTGCGTGCTGCCGATCCTGCTGCT-GCAACCCTCGATCCGGTCTGATCTTAGACTGGGA
* * *
20054317 ATGAACTCCGCATGCCTAAGGCAACCGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGC
65 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGAC-GGCGGGCGGGCACTACGC
* * *
20054382 TGGCCA-AAAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
129 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
20054446 TCATATTTCTGCATGCCAATCCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
194 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
*
20054511 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTCAAACTTTTTACG
259 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
* * * *
20054576 GTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACATGGTATATGTGATCCTT
324 GTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
20054641 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
389 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* *
20054706 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATGTC
454 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
20054771 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGTGGGCCAATATAAGGGC
519 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * *
20054836 CAAGTACCAGCACCCACCGTACATCATGTGCGCACACACCCCCCGG-CCCCCGATCGTCGAAACC
584 CAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGCCCCCCGATCGTCGGAACC
* **
20054900 CCAATGCCGCCTATCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCG
648 CCAATGCCGTCGGTCAGGTTCT-C--CG--G-T-----GATGGTGCCCCGACGAAGAAAAATGCG
* * *
20054965 GCACCAGCACATGCCCAAGCTCAAG-ATGTGCTACCGTAACC-C--TC-G-G-TC-----C--GG
702 GCACCAGCACATGCCCGAGC-CCAGCATGTGCTACCGCAACCTCGTTCGGTGATCTTAGACTGGG
* *
20055016 --T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGC
766 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* ** * * *
20055072 ATGCATGTGCTCAGCT-GACCAGAGGGGCGGGATACGCAAGTCGGGGATCAACCGGGT
831 GTGCGGGCGCTCAGCTCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGT
* * * ** * ** *
20055129 CCCCTTCTACGTGCTGCTGATCCTTTTGCCGCAACCCTC-AGTTTGGTTTGATCTTAGACTGGGA
1 CCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGA
* * * * *
20055193 ATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAGCGGGTGGACGAGCGGGCGGGCACTACGT
65 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGACG-GCGGGCGGGCACTACGC
* * * *
20055258 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATTGGGAGGTTGGTGGGTTTAGGCACATCT
129 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
20055323 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGCAAATTCATACAATGGTCTCTTAAGC
194 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
20055386 TTATTTTTTC
Statistics
Matches: 5667, Mismatches: 624, Indels: 416
0.84 0.09 0.06
Matches are distributed among these distances:
867 40 0.01
868 195 0.03
869 516 0.09
870 72 0.01
871 1 0.00
872 3 0.00
873 13 0.00
874 2 0.00
875 2 0.00
876 208 0.04
877 117 0.02
878 5 0.00
879 85 0.01
880 7 0.00
881 64 0.01
882 3 0.00
883 4 0.00
884 1 0.00
885 2 0.00
886 3 0.00
887 490 0.09
888 440 0.08
889 11 0.00
890 173 0.03
891 618 0.11
892 580 0.10
893 72 0.01
894 7 0.00
895 9 0.00
896 319 0.06
897 22 0.00
898 50 0.01
899 294 0.05
900 129 0.02
901 3 0.00
902 62 0.01
903 95 0.02
904 178 0.03
905 5 0.00
911 2 0.00
912 15 0.00
913 2 0.00
914 1 0.00
916 2 0.00
917 1 0.00
919 2 0.00
920 1 0.00
922 154 0.03
923 5 0.00
926 172 0.03
927 235 0.04
928 2 0.00
929 1 0.00
930 1 0.00
933 1 0.00
934 5 0.00
936 1 0.00
937 3 0.00
938 118 0.02
939 23 0.00
940 1 0.00
941 2 0.00
942 3 0.00
943 3 0.00
944 1 0.00
946 6 0.00
948 2 0.00
949 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
CCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGACGGCGGGCGGGCACTACGCCG
GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCA
ATGCCGTCGGTCAGGTTCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
CCGAGCCCAGCATGTGCTACCGCAACCTCGTTCGGTGATCTTAGACTGGGAATGAACTCCGTATG
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
TCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGT
Found at i:20050575 original size:25 final size:25
Alignment explanation
Indices: 20050547--20050594 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
20050537 CCGGTCCGAT
20050547 CTTAGACTGGGAATGAACTCCGTTG
1 CTTAGACTGGGAATGAACTCCGTTG
20050572 CTTAGACTGGGAATGAACTCCGT
1 CTTAGACTGGGAATGAACTCCGT
20050595 ATGCCTGAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCCGTTG
Found at i:20051519 original size:25 final size:26
Alignment explanation
Indices: 20051443--20051520 Score: 99
Period size: 26 Copynumber: 3.0 Consensus size: 26
20051433 CTGGTCCGAT
*
20051443 CTTAGACTAGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
20051469 CTTAGACTGGGAATGAA-TTCCATATG
1 CTTAGACTGGGAATGAACTT-CGTATG
20051495 CTT-GACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
20051520 C
1 C
20051521 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
25 19 0.41
26 26 0.57
27 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:20052181 original size:12 final size:12
Alignment explanation
Indices: 20052164--20052198 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
20052154 TTGATGAGGC
20052164 ATAGGGGCCAAT
1 ATAGGGGCCAAT
20052176 ATAGGGGCCAAT
1 ATAGGGGCCAAT
*
20052188 ATAAGGGCCAA
1 ATAGGGGCCAA
20052199 GTGCCAGCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.37, C:0.17, G:0.31, T:0.14
Consensus pattern (12 bp):
ATAGGGGCCAAT
Found at i:20054156 original size:26 final size:26
Alignment explanation
Indices: 20054120--20054172 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20054110 CTGGTTCGAT
*
20054120 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20054146 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20054172 C
1 C
20054173 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20055871 original size:7 final size:7
Alignment explanation
Indices: 20055859--20055980 Score: 84
Period size: 7 Copynumber: 16.7 Consensus size: 7
20055849 TCATTTCATT
*
20055859 TTTTTTC
1 TTTTTTA
20055866 TTTTTTA
1 TTTTTTA
*
20055873 TTTTTGA
1 TTTTTTA
**
20055880 TTCATTA
1 TTTTTTA
20055887 TTTTTTA
1 TTTTTTA
20055894 TTTTCTTA
1 TTTT-TTA
20055902 CTTTTTATA
1 -TTTTT-TA
*
20055911 TTTTATA
1 TTTTTTA
20055918 TTTTTTA
1 TTTTTTA
**
20055925 -TTTTGC
1 TTTTTTA
**
20055931 TTTAATA
1 TTTTTTA
*
20055938 TTTTTTG
1 TTTTTTA
20055945 TTTTTTA
1 TTTTTTA
20055952 TTTTTTA
1 TTTTTTA
*
20055959 TTTCTTTC
1 TTT-TTTA
20055967 TTTATTTA
1 TTT-TTTA
20055975 TATTTT
1 T-TTTT
20055981 CATAAATTTT
Statistics
Matches: 87, Mismatches: 22, Indels: 11
0.73 0.18 0.09
Matches are distributed among these distances:
6 4 0.05
7 55 0.63
8 20 0.23
9 8 0.09
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.76
Consensus pattern (7 bp):
TTTTTTA
Found at i:20056017 original size:68 final size:65
Alignment explanation
Indices: 20055884--20056017 Score: 146
Period size: 68 Copynumber: 2.0 Consensus size: 65
20055874 TTTTGATTCA
* ** *
20055884 TTATTTTTTATTTTCTTACTTTTTATATTTTATATTTTTTATTTTGCTTTAATATTTTTTGTTTT
1 TTATTTTTTATTTTCTTACTTTTTATATTTTATAATTTTTATAATGCTTTAATATTTTTTATTTT
* * *
20055949 TTATTTTTTA-TTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGAT-TTTTTT
1 TTATTTTTTATTTTCTTAC-TT-TTTATATTTT-AT-AATTTTTATAATGCTTT-AATATTTTTT
20056012 ATTTT
61 ATTTT
20056017 T
1 T
20056018 CTTTCTTTTT
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
64 7 0.12
65 12 0.21
66 10 0.18
67 2 0.04
68 24 0.42
69 2 0.04
ACGTcount: A:0.19, C:0.04, G:0.04, T:0.73
Consensus pattern (65 bp):
TTATTTTTTATTTTCTTACTTTTTATATTTTATAATTTTTATAATGCTTTAATATTTTTTATTTT
Found at i:20056605 original size:7 final size:7
Alignment explanation
Indices: 20056595--20056714 Score: 62
Period size: 7 Copynumber: 15.7 Consensus size: 7
20056585 CATTTTTGAC
20056595 TTTTTTA
1 TTTTTTA
20056602 -TTTTTA
1 TTTTTTA
*
20056608 TTTTTGA
1 TTTTTTA
** *
20056615 TTCATCA
1 TTTTTTA
20056622 TTTTTTA
1 TTTTTTA
20056629 TTTTCTTA
1 TTTT-TTA
20056637 CTTTTTATA
1 -TTTTT-TA
*
20056646 TTTTATA
1 TTTTTTA
*
20056653 TTTTTTGT
1 TTTTTT-A
20056661 TTTGCTTTAA
1 TTT--TTT-A
*
20056671 TTTTTTTC
1 -TTTTTTA
20056679 TTTTTTA
1 TTTTTTA
20056686 TTTTTTA
1 TTTTTTA
*
20056693 TTTCTTTC
1 TTT-TTTA
20056701 TTTATTTA
1 TTT-TTTA
20056709 TATTTT
1 T-TTTT
20056715 CATAAATTTT
Statistics
Matches: 86, Mismatches: 17, Indels: 19
0.70 0.14 0.16
Matches are distributed among these distances:
6 6 0.07
7 40 0.47
8 23 0.27
9 11 0.13
10 3 0.03
11 3 0.03
ACGTcount: A:0.15, C:0.07, G:0.03, T:0.76
Consensus pattern (7 bp):
TTTTTTA
Found at i:20056688 original size:33 final size:31
Alignment explanation
Indices: 20056621--20056695 Score: 87
Period size: 33 Copynumber: 2.4 Consensus size: 31
20056611 TTGATTCATC
*
20056621 ATTTTTTATTTTCTTACTTTTTATATTTTAT
1 ATTTTTTATTTTCTTAATTTTTATATTTTAT
* * * *
20056652 ATTTTTTGTTTTGCTTTAATTTTTTTCTTTTTT
1 ATTTTTTATTTT-C-TTAATTTTTATATTTTAT
20056685 ATTTTTTATTT
1 ATTTTTTATTT
20056696 CTTTCTTTAT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
31 11 0.31
32 1 0.03
33 24 0.67
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.77
Consensus pattern (31 bp):
ATTTTTTATTTTCTTAATTTTTATATTTTAT
Found at i:20056712 original size:18 final size:18
Alignment explanation
Indices: 20056675--20056713 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
20056665 CTTTAATTTT
*
20056675 TTTCTTTTTTATTTTTTA
1 TTTCTTTTTTATTTTATA
20056693 TTTCTTTCTTTA-TTTATA
1 TTTCTTT-TTTATTTTATA
20056711 TTT
1 TTT
20056714 TCATAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.13, C:0.08, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTCTTTTTTATTTTATA
Found at i:20057344 original size:6 final size:7
Alignment explanation
Indices: 20057327--20057396 Score: 59
Period size: 7 Copynumber: 9.6 Consensus size: 7
20057317 ATTTTTGTCT
20057327 TTTTTTA
1 TTTTTTA
20057334 TTTTTTA
1 TTTTTTA
*
20057341 TTTTTGA
1 TTTTTTA
** *
20057348 TTCATCA
1 TTTTTTA
20057355 TTTTTTA
1 TTTTTTA
20057362 TTTTCTTA
1 TTTT-TTA
20057370 CTTTTTATA
1 -TTTTT-TA
*
20057379 TTTTATA
1 TTTTTTA
*
20057386 TTTTTTG
1 TTTTTTA
20057393 TTTT
1 TTTT
20057397 GCTTTAATAT
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
7 36 0.72
8 8 0.16
9 6 0.12
ACGTcount: A:0.16, C:0.06, G:0.03, T:0.76
Consensus pattern (7 bp):
TTTTTTA
Found at i:20058024 original size:734 final size:731
Alignment explanation
Indices: 20055385--20060819 Score: 8925
Period size: 710 Copynumber: 7.5 Consensus size: 731
20055375 GTCTCTTAAG
* *
20055385 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTTAATTTTTTTCTTCGTTTTAAAAATTT
20055450 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTTCT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTA-TTTTTTCT
20055515 TG-TTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTCACACTTCCT
130 TGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTCACACTTCCT
20055579 TGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAA-TTTTTCACA
195 TGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACA
* *
20055643 AATTTCTTTTTATTTTTTATTTTCATTTTTTAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTT
260 AATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTAAAGTTTTTTTTGTTGCATTTTCTTTT
*
20055708 TTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTGAATTTTTAT
325 TTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTT-ACCTTGAATTTTTAT
20055773 ATTGTTTTCTTATTATATCTTATATGTTTTTCAA-TTTTTGTATTTTTTCAAA-ATATTTTTTTC
389 ATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATAT-TTTTTTTC
* * *
20055836 TATTTCCTCGTTTTCATTTCA----T---TTTTTTTCTTTTTTATTTTTGATTCATTATTTTTTA
453 TATTTTCTCG-TTTCATTTCATTTTTGACTTTTTTTATTTTTTATTTTTGATTCATCATTTTTTA
* *
20055894 TTTTCTTACTTTTTATATTTTATATTTTTTATTTTGCTTTAATATTTTTTGTTTTTTATTTTTTA
517 TTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATA---TTT-TTTTCT-TTTTTTA
20055959 TTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTC-TTTC
577 TTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTC
* *
20056023 TTT-TTTATTTATCGTTG-TTCTTATTTTCTATTCTATTTTTATAATTTTTCATTAACTCCTTTT
642 TTTGTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTT
20056086 CCTTTTAAATTTTTCTTTTTTTTTTTTA
707 CCTTTTAAATTTTTC---TTTTTTTTTA
** *
20056114 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTTCCTTTTTTTCTTTGTTTTAAAAATTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTTAATTTTTTTCTTCGTTTTAAAAATTT
*
20056179 CTACAAAACATTTTTTCTTTTTATTTTATTTCATACTTTTGCCTCTTCATTTTTTATTTTTTCTT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTT
*
20056244 GTTTTTCTAATTTTTTTCACAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTCACACTTCCTT
131 GTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTCACACTTCCTT
*
20056309 GGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTTTTCTTTTCTTAATTTTTTCACAA
196 GGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAA
* *
20056374 ATTTCTTTTTATTTTTTATTTTCAGTTTTAAATTCTTATAGTTTTTTTTTGTTGCA-TTTCTTTT
261 ATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTAAAG-TTTTTTTTGTTGCATTTTCTTTT
*
20056438 TTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGCCCTTGAATTTTTAT
325 TTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTT-ACCTTGAATTTTTAT
* *
20056503 ATTCTTTTCTTATTATATCTTATATATTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTTCT
389 ATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTTCT
*
20056568 ATTTTTTCGTTTCATTTCATTTTTGAC-TTTTTTA-TTTTTATTTTTGATTCATCATTTTTTATT
454 ATTTTCTCGTTTCATTTCATTTTTGACTTTTTTTATTTTTTATTTTTGATTCATCATTTTTTATT
* *
20056631 TTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATTTTTTTCTTTTTTATTTTTTATTT
519 TTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAA--TATTT-TTTTCT-TTTTTTATTT
20056696 CTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGA-TTTTTTATTTTTCTTTTCTTT
580 CTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTCTTT
* * *
20056760 TTTTATTTATCGTTGTTTCTTATTTTCTATTCTATTTTTATAA-TTTTCATTAAATC-TTTTCCT
645 GTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTTCCT
20056823 TTTAAATTTTTC-TTTTTTTTA
710 TTTAAATTTTTCTTTTTTTTTA
* * *
20056844 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCATTTTAAAAATTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTTAATTTTTTTCTTCGTTTTAAAAATTT
20056909 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTT
* *
20056974 GTTTTTCTAA-TTTTTTCGCAAAATTCTTTTTATTTCTTCTTTCCATTTTTTTTCACACTCCCTT
131 GTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTCACACTTCCTT
*
20057038 GGATTTTTTGTTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAA
196 GGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAA
* **
20057103 ATTTCTTTTTATTTTTTATTTTCATTTTTAAATTGTTGTAGTTTTTTTTTTGTTGCATTTTCTTT
261 ATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTAAAG--TTTTTTTTGTTGCATTTTCTTT
* *
20057168 TTTCGTCTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATCTTTTGT-CCTTCAATTTTT
324 TTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAAT-TTTT-TACCTTGAATTTTT
20057232 ATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTT
387 ATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTT
*
20057297 CTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTATTTTTGATTCATCATTTTTTA
452 CTATTTTCTCGTTTCATTTCATTTTTGACTTTTTTTATTTTTTATTTTTGATTCATCATTTTTTA
20057362 TTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTTATTTCT
517 TTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTTATTTCT
20057427 TTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTCTTTGT
582 TTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTCTTTGT
20057492 TTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTTCCTTT
647 TTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTTCCTTT
*
20057557 TAAATTTTTCTTTTTTTTTC
712 TAAATTTTTCTTTTTTTTTA
* *
20057577 CTTATTTTTTCATGAGCTTTCATATTTTCTTTTGTTTTTAATTTTTTTCTTCGTTTTAAAATTTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTTAATTTTTTTCTTCGTTTTAAAAATTT
* *
20057642 CTACAAAACTTTTTTTC-TTTTATTTTATTTCATATTTTTGCCTCTTCACTTTTTATTTTTTCTT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTT
*
20057706 GTTTTTCTAATTTTTTTTCTCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTTCACACTTCC
131 GTTTTTCTAA-TTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCA-TTTTTTTTCACACTTCC
*
20057771 TTGGATTTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCATAATTTTTTCA
194 TTGGA-TTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCA
*
20057836 CAAATTTTTTTTTATTTTTTATTTTCATTTTTAAATTCTTAAAGTTTTTTTTGTTGCATTTTCTT
258 CAAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTAAAGTTTTTTTTGTTGCATTTTCTT
*
20057901 TTTTCGTTCTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTACCTTTGAATTTTT
323 TTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTACC-TTGAATTTTT
*
20057966 ATATTGTTTTCTTATTATATCTTACATGTTTTTCAATTTTTTGTATTTTTTCAAATA-TTTTTTT
387 ATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTT
20058030 CTATTTTCTCGTTTCATTTCATTTTTGAC----------------TTTT--TT--T-ATTTTTTA
452 CTATTTTCTCGTTTCATTTCATTTTTGACTTTTTTTATTTTTTATTTTTGATTCATCATTTTTTA
*
20058074 TTTTCTTACTTTTTATATTTTATATTTTTTGCTTTGCTTTAAT-TTTTTTTC-TTTTTTATTTCT
517 TTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTTATTTCT
20058137 TTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTCTTTGT
582 TTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTCTTTGT
20058202 TTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTTCCTTT
647 TTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTTCCTTT
*
20058267 TAAATTTTTCTTTTTTTTTC
712 TAAATTTTTCTTTTTTTTTA
* *
20058287 CTTATTTTTTCATGAGCTTTCATATTTTCTTTTGTTTTTAATTTTTTTCTTCGTTTTAAAATTTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTTAATTTTTTTCTTCGTTTTAAAAATTT
* *
20058352 CTACAAAACTTTTTTTC-TTTTATTTTATTTCATATTTTTGCCTCTTCACTTTTTATTTTTTCTT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTT
*
20058416 GTTTTTCTAATTTTTTTTCTCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTTCACACTTCC
131 GTTTTTCTAA-TTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCA-TTTTTTTTCACACTTCC
* *
20058481 TTGGATTTTTTATTTTTCGTAAACCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCAC
194 TTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCAC
* **
20058546 AAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTGTTGTAGTTTTTTTTTGTTGCATTTTCTT
259 AAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTAAAG-TTTTTTTTGTTGCATTTTCTT
* *
20058611 TTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTCAATTTTT
323 TTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTT-ACCTTGAATTTTT
20058676 ATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTT
387 ATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTT
*
20058741 CTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTATTTTTGATTCATCATTTTTTA
452 CTATTTTCTCGTTTCATTTCATTTTTGACTTTTTTTATTTTTTATTTTTGATTCATCATTTTTTA
20058806 TTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTT-A-ATTTTTTTC-TTTTTTATTTCT
517 TTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTTATTTCT
*
20058868 TTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTCTTTTT
582 TTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTCTTTGT
*
20058933 TTATTTATCGTTGTTTCTTATTTTCTATTGTAGTTTTATAATTTTTCATTAACTCTTTTTCCTTT
647 TTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTTCCTTT
20058998 TAAATTTTTCTTTCTTTTTTTTA
712 TAAATTTTTC--T-TTTTTTTTA
* *
20059021 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTTAATTTTTTTCTTCGTTTTAAAAATTT
* *
20059086 CTACAAAACAATTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTCTTTTTTCTT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTT
* *
20059151 GTTTTTCTAATTTTTTTCACAAAATTCTTTTTGTTTCTTGTTTCCATTTTTTTTTCACACTTCCT
131 GTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCA-TTTTTTTTCACACTTCCT
*
20059216 TGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCATAATTTTTTCACA
195 TGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACA
* *
20059281 AATTTGTTTTTATTTTTAATTTTCATTTTTAAATTCTTAAAGTTTTTTTTGTTGCATTTTCTTTT
260 AATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTAAAGTTTTTTTTGTTGCATTTTCTTTT
*
20059346 TTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTATCTTTGAATTTTTAT
325 TTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTA-CCTTGAATTTTTAT
*
20059411 ATTGTTTTCTTATTATATCTTACATGTTTTTCAATTTTTTGTATTTTTTCAAATA-TTTTTTTCT
389 ATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTTCT
20059475 ATTTTCTCGTTTCATTTCATTTTTGACTTTTTTTATTTTTTATTTTTGATTCATCATTTTTTATT
454 ATTTTCTCGTTTCATTTCATTTTTGACTTTTTTTATTTTTTATTTTTGATTCATCATTTTTTATT
* *
20059540 TTCTTACTTTTTTTATTTTATATTTTTTGTTTTGCTTTAATTTTATTTTTCTTTTTTCTTTTTTA
519 TTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAA---TA--TTT-TTTTCT-TTTTTTA
20059605 TTTCTTTCTTTATTTATATTTTCAT-AATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTC
577 TTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTC
20059669 TTTGTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTT
642 TTTGTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTT
20059734 CCTTTTAAATTTTTCTTTTTTTTTA
707 CCTTTTAAATTTTTCTTTTTTTTTA
* * *
20059759 CTTATTTTTTCATGAGCCTTCATATTTTCTTTTGTTTTTAATTTTTTTCTTCGTTTTAAAATTTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTTAATTTTTTTCTTCGTTTTAAAAATTT
* *
20059824 CTACAAAACTTTTTTTC-TTTTATTTTATTTCATATTTTTGCCTCTTCACTTTTTATTTTTTCTT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTT
20059888 GTTTTTCTAATTTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTTCACACTTCC
131 GTTTTTCTAA-TTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCA-TTTTTTTTCACACTTCC
*
20059953 TTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCATAATTTTTTCAC
194 TTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCAC
*
20060018 AAATTTGTTTTTATTTTTTAATTTTCATTTTTAAATTCTTAAAG-TTTTTTTGTTGCATTTTCTT
259 AAATTTCTTTTTATTTTTT-ATTTTCATTTTTAAATTCTTAAAGTTTTTTTTGTTGCATTTTCTT
*
20060082 TTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTATCTTTGAATTTTT
323 TTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTA-CCTTGAATTTTT
* *
20060147 ATATTGTTTTCTTATTATATCTTACATGTTTTTCAATTTTTTGTATTTTTTTCAAATA-TTGTTT
387 ATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTA-TTTTTTCAAATATTTTTTT
20060211 TCTATTTTCTCGTTTCATTTCATTTTTGACTTTTTTTATTTTTTATTTTTGATTCATCATTTTTT
451 TCTATTTTCTCGTTTCATTTCATTTTTGACTTTTTTTATTTTTTATTTTTGATTCATCATTTTTT
20060276 ATTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTT-A-A---------TTTTTT-TTTC
516 ATTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTTATTTC
* *
20060329 TTTCTTTATTTATATTTTCATATATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTCTTTT
581 TTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTCTTTG
20060394 TTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTTTCCT
646 TTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTC-TTTTTCCT
20060459 TTTAAATTTTTTCTTTTTTTTT-
710 TTTAAA-TTTTTCTTTTTTTTTA
* * * *
20060481 CTTACTTTTTCATGTGCTTTCATATTTTCTTTTG-TTTTCACTTTTTTCTTTGTTTTAAAAATTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTTAATTTTTTTCTTCGTTTTAAAAATTT
20060545 CTAC-AAACA-TTTTTCTTTTTATTTTATTTCATATTTTTTGCCCTCTTCATTTTTTTATTTTTT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATA-TTTTTG-CCTCTTCA-TTTTTTATTTTTT
* *
20060608 CTTGTTTTTCTAA-TTTTTTCGCAAAATTC-TTTTATTTCTTCTTTCCATTTTTTTTCACACTCC
128 CTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTCACACTTC
* *
20060671 CTTGGATTTTTTGTTTTTTCATAAATCTTTTGGCTTTTCATTTTTATTCTTTTCTTAATTTTTTC
193 CTTGGATTTTTT-ATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTC
*
20060736 ACAAA-TTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGGTTTTTTTTGTTGCATTTTC
257 ACAAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTA-AAGTTTTTTTTGTTGCATTTTC
*
20060800 TATTTTCGTTTTCATTTTTA
321 TTTTTTCGTTTTCATTTTTA
Statistics
Matches: 4478, Mismatches: 142, Indels: 181
0.93 0.03 0.04
Matches are distributed among these distances:
709 96 0.02
710 497 0.11
711 45 0.01
712 50 0.01
713 1 0.00
715 2 0.00
717 4 0.00
718 21 0.00
719 49 0.01
720 154 0.03
721 155 0.03
722 53 0.01
723 40 0.01
727 4 0.00
728 10 0.00
729 439 0.10
730 389 0.09
731 376 0.08
732 246 0.05
733 348 0.08
734 490 0.11
735 169 0.04
736 130 0.03
737 57 0.01
738 350 0.08
739 150 0.03
740 4 0.00
741 117 0.03
742 32 0.01
ACGTcount: A:0.17, C:0.12, G:0.04, T:0.67
Consensus pattern (731 bp):
CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTTAATTTTTTTCTTCGTTTTAAAAATTT
CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTT
GTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTCACACTTCCTT
GGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAA
ATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTAAAGTTTTTTTTGTTGCATTTTCTTTTT
TCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTACCTTGAATTTTTATAT
TGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTTCTAT
TTTCTCGTTTCATTTCATTTTTGACTTTTTTTATTTTTTATTTTTGATTCATCATTTTTTATTTT
CTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTTATTTCTTTCT
TTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTCTTTGTTTAT
TTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTTCCTTTTAAA
TTTTTCTTTTTTTTTA
Found at i:20058070 original size:7 final size:7
Alignment explanation
Indices: 20058060--20058103 Score: 52
Period size: 7 Copynumber: 5.9 Consensus size: 7
20058050 ATTTTTGACT
20058060 TTTTTTA
1 TTTTTTA
20058067 TTTTTTA
1 TTTTTTA
20058074 TTTTCTTA
1 TTTT-TTA
20058082 CTTTTTATA
1 -TTTTT-TA
*
20058091 TTTTATA
1 TTTTTTA
20058098 TTTTTT
1 TTTTTT
20058104 GCTTTGCTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
7 18 0.56
8 8 0.25
9 6 0.19
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.80
Consensus pattern (7 bp):
TTTTTTA
Found at i:20058077 original size:15 final size:15
Alignment explanation
Indices: 20058059--20058153 Score: 55
Period size: 16 Copynumber: 5.8 Consensus size: 15
20058049 CATTTTTGAC
20058059 TTTTTTTATTTTTTA
1 TTTTTTTATTTTTTA
* *
20058074 TTTTCTTACTTTTTA
1 TTTTTTTATTTTTTA
* *
20058089 TATTTTATATTTTTTGC
1 T-TTTTTTATTTTTT-A
* *
20058106 TTTGCTTTAATTTTTTT
1 TTT--TTTTATTTTTTA
*
20058123 TCTTTTTTATTTCTTTC
1 T-TTTTTTATTT-TTTA
20058140 TTTATTTATATTTT
1 TTT-TTT-TATTTT
20058154 CATAAATTTT
Statistics
Matches: 61, Mismatches: 11, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
15 14 0.23
16 21 0.34
17 10 0.16
18 16 0.26
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.77
Consensus pattern (15 bp):
TTTTTTTATTTTTTA
Found at i:20058788 original size:6 final size:7
Alignment explanation
Indices: 20058771--20058840 Score: 59
Period size: 7 Copynumber: 9.6 Consensus size: 7
20058761 ATTTTTGTCT
20058771 TTTTTTA
1 TTTTTTA
20058778 TTTTTTA
1 TTTTTTA
*
20058785 TTTTTGA
1 TTTTTTA
** *
20058792 TTCATCA
1 TTTTTTA
20058799 TTTTTTA
1 TTTTTTA
20058806 TTTTCTTA
1 TTTT-TTA
20058814 CTTTTTATA
1 -TTTTT-TA
*
20058823 TTTTATA
1 TTTTTTA
*
20058830 TTTTTTG
1 TTTTTTA
20058837 TTTT
1 TTTT
20058841 GCTTTAATTT
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
7 36 0.72
8 8 0.16
9 6 0.12
ACGTcount: A:0.16, C:0.06, G:0.03, T:0.76
Consensus pattern (7 bp):
TTTTTTA
Found at i:20059520 original size:6 final size:7
Alignment explanation
Indices: 20059503--20059626 Score: 63
Period size: 7 Copynumber: 16.9 Consensus size: 7
20059493 ATTTTTGACT
20059503 TTTTTTA
1 TTTTTTA
20059510 TTTTTTA
1 TTTTTTA
*
20059517 TTTTTGA
1 TTTTTTA
** *
20059524 TTCATCA
1 TTTTTTA
20059531 TTTTTTA
1 TTTTTTA
20059538 TTTTCTTA
1 TTTT-TTA
20059546 CTTTTTTTA
1 --TTTTTTA
*
20059555 TTTTATA
1 TTTTTTA
*
20059562 TTTTTTG
1 TTTTTTA
20059569 TTTTGCTT-
1 TTTT--TTA
*
20059577 TAATTTTA
1 T-TTTTTA
*
20059585 -TTTTTC
1 TTTTTTA
*
20059591 TTTTTTC
1 TTTTTTA
20059598 TTTTTTA
1 TTTTTTA
*
20059605 TTTCTTTC
1 TTT-TTTA
20059613 TTTATTTA
1 TTT-TTTA
*
20059621 TATTTT
1 TTTTTT
20059627 CATAATTTTT
Statistics
Matches: 90, Mismatches: 18, Indels: 18
0.71 0.14 0.14
Matches are distributed among these distances:
6 4 0.04
7 60 0.67
8 15 0.17
9 7 0.08
10 4 0.04
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.77
Consensus pattern (7 bp):
TTTTTTA
Found at i:20059595 original size:23 final size:25
Alignment explanation
Indices: 20059554--20059600 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 25
20059544 TACTTTTTTT
*
20059554 ATTTTATATTTTTTGTTTTGCTTTA
1 ATTTTATATTTTCTGTTTTGCTTTA
*
20059579 ATTTTAT-TTTTCT-TTTTTCTTT
1 ATTTTATATTTTCTGTTTTGCTTT
20059601 TTTATTTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 5 0.25
25 7 0.35
ACGTcount: A:0.13, C:0.06, G:0.04, T:0.77
Consensus pattern (25 bp):
ATTTTATATTTTCTGTTTTGCTTTA
Found at i:20059601 original size:18 final size:19
Alignment explanation
Indices: 20059574--20059626 Score: 56
Period size: 18 Copynumber: 2.7 Consensus size: 19
20059564 TTTTGTTTTG
20059574 CTTTAATTTTATTTTTCTTT
1 CTTT-ATTTTATTTTTCTTT
*
20059594 -TTTCTTTT-TTATTTCTTT
1 CTTTATTTTATT-TTTCTTT
20059612 CTTTATTTATATTTT
1 CTTTATTT-TATTTT
20059627 CATAATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
17 2 0.07
18 11 0.41
19 9 0.33
20 3 0.11
21 2 0.07
ACGTcount: A:0.13, C:0.09, G:0.00, T:0.77
Consensus pattern (19 bp):
CTTTATTTTATTTTTCTTT
Found at i:20059950 original size:738 final size:729
Alignment explanation
Indices: 20058066--20060819 Score: 4668
Period size: 738 Copynumber: 3.8 Consensus size: 729
20058056 GACTTTTTTT
*
20058066 ATTTTTTATTTTCTTACTTTTTATATTTTATATTTTTTGCTTTGCTTTAATTTTTTTTCTTTTTT
1 ATTTTTTATTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAA-TTTTTTTCTTTTTT
20058131 ATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTT
65 ATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTT
20058196 CTTTGTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTT
130 CTTTGTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTT
*
20058261 TCCTTTTAAATTTTTCTTTTTTTTTCCTTATTTTTTCATGAGCTTTCATATTTTCTTTTGTTTTT
195 TCCTTTTAAATTTTTCTTTTTTTTTACTTATTTTTTCATGAGCTTTCATATTTTCTTTTGTTTTT
* *
20058326 AATTTTTTTCTTCGTTTTAAAATTTTCTACAAAACTTTTTTTC-TTTTATTTTATTTCATATTTT
260 AATTTTTTTCTTCGTTTTAAAAATTTCTACAAAACTATTTTTCTTTTTATTTTATTTCATATTTT
*
20058390 TGCCTCTTCACTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTTCTCAAAATTCTTTTTATTTCT
325 TGCCTCTTCACTTTTTATTTTTTCTTGTTTTTCTAA-TTTTTTTCGCAAAATTCTTTTTATTTCT
* *
20058455 TGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCGTAAACCTTTTGTCTTTTCAT
389 TGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCAT
* * *
20058520 TTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTGTT
454 TTTTATTCTTTTCATAATTTTTTCACAAATTTCTTTTTATTTTTAATTTTCATTTTTAAATTCTT
**
20058585 GTAGTTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTT
519 AAAG-TTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTT
* * * *
20058650 TTTTAATTTTTTGTCCTTCAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTT
583 TTTTAATTTTTTATCTTTGAATTTTTATATTGTTTTCTTATTATATCTTACATGTTTTTCAATTT
*
20058715 TTTGTATTTTTTCAAATATTTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATT
648 TTTGTATTTTTTCAAATA-TTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGACTTTTTTTATT
20058780 TTTTATTTTTGATTCATC
712 TTTTATTTTTGATTCATC
20058798 ATTTTTTATTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATTTTTTTCTTTTTTA
1 ATTTTTTATTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATTTTTTTCTTTTTTA
20058863 TTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTC
66 TTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTC
* *
20058928 TTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTAGTTTTATAATTTTTCATTAACTCTTTTT
131 TTTGTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTT
*
20058993 CCTTTTAAATTTTTCTTTCTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTT
196 CCTTTTAAATTTTTC--T-TTTTTTTTACTTATTTTTTCATGAGCTTTCATATTTTCTTTTGTTT
* * *
20059058 TCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACAATTTTTCTTTTTATTTTATTTCATATT
258 TTAATTTTTTTCTTCGTTTTAAAAATTTCTACAAAACTATTTTTCTTTTTATTTTATTTCATATT
* * * *
20059123 TTTGCCTCTTCATTTTTTCTTTTTTCTTGTTTTTCTAATTTTTTTCACAAAATTCTTTTTGTTTC
323 TTTGCCTCTTCACTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTC
20059188 TTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCA
388 TTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCA
*
20059253 TTTTTATTCTTTTCATAATTTTTTCACAAATTTGTTTTTATTTTTAATTTTCATTTTTAAATTCT
453 TTTTTATTCTTTTCATAATTTTTTCACAAATTTCTTTTTATTTTTAATTTTCATTTTTAAATTCT
20059318 TAAAGTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTT
518 TAAAGTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTT
20059383 TTTTAATTTTTTATCTTTGAATTTTTATATTGTTTTCTTATTATATCTTACATGTTTTTCAATTT
583 TTTTAATTTTTTATCTTTGAATTTTTATATTGTTTTCTTATTATATCTTACATGTTTTTCAATTT
20059448 TTTGTATTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGACTTTTTTTATTT
648 TTTGTATTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGACTTTTTTTATTT
20059513 TTTATTTTTGATTCATC
713 TTTATTTTTGATTCATC
*
20059530 ATTTTTTATTTTCTTACTTTTTTTATTTTATATTTTTTGTTTTGCTTTAATTTTATTTTTCTTTT
1 ATTTTTTATTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTT-A----A----T-TTTT
20059595 TTCTTTTTTATTTCTTTCTTTATTTATATTTTCAT-AATTTTTATAATGTTTTGGATTTTTTTAT
56 TTCTTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTAT
20059659 TTTTCTTTTCTTTGTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATT
121 TTTTCTTTTCTTTGTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATT
*
20059724 AACTCTTTTTCCTTTTAAATTTTTCTTTTTTTTTACTTATTTTTTCATGAGCCTTCATATTTTCT
186 AACTCTTTTTCCTTTTAAATTTTTCTTTTTTTTTACTTATTTTTTCATGAGCTTTCATATTTTCT
* *
20059789 TTTGTTTTTAATTTTTTTCTTCGTTTTAAAATTTTCTACAAAACTTTTTTTC-TTTTATTTTATT
251 TTTGTTTTTAATTTTTTTCTTCGTTTTAAAAATTTCTACAAAACTATTTTTCTTTTTATTTTATT
20059853 TCATATTTTTGCCTCTTCACTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTTCGCAAAATTCTT
316 TCATATTTTTGCCTCTTCACTTTTTATTTTTTCTTGTTTTTCTAA-TTTTTTTCGCAAAATTCTT
20059918 TTTATTTCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTG
380 TTTATTTCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTG
*
20059983 TCTTTTCATTTTTATTCTTTTCATAATTTTTTCACAAATTTGTTTTTATTTTTTAATTTTCATTT
445 TCTTTTCATTTTTATTCTTTTCATAATTTTTTCACAAATTTCTTTTTA-TTTTTAATTTTCATTT
20060048 TTAAATTCTTAAAG-TTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAAC
509 TTAAATTCTTAAAGTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAAC
20060112 TTTTCTCTTTTTTAATTTTTTATCTTTGAATTTTTATATTGTTTTCTTATTATATCTTACATGTT
574 TTTTCTCTTTTTTAATTTTTTATCTTTGAATTTTTATATTGTTTTCTTATTATATCTTACATGTT
*
20060177 TTTCAATTTTTTGTATTTTTTTCAAATATTGTTTTCTATTTTCTCGTTTCATTTCATTTTTGACT
639 TTTCAATTTTTTGTA-TTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGACT
20060242 TTTTTTATTTTTTATTTTTGATTCATC
703 TTTTTTATTTTTTATTTTTGATTCATC
20060269 ATTTTTTATTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAA--------TTTTTT-
1 ATTTTTTATTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATTTTTTTCTTTTTTA
*
20060325 TTTCTTTCTTTATTTATATTTTCATATATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTC
66 TTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTC
*
20060390 TTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTT
131 TTTGTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTC-TTTT
* *
20060455 TCCTTTTAAATTTTTTCTTTTTTTTT-CTTACTTTTTCATGTGCTTTCATATTTTCTTTTG-TTT
195 TCCTTTTAAA-TTTTTCTTTTTTTTTACTTATTTTTTCATGAGCTTTCATATTTTCTTTTGTTTT
* * *
20060518 TCACTTTTTTCTTTGTTTTAAAAATTTCTAC-AAAC-ATTTTTCTTTTTATTTTATTTCATATTT
259 TAATTTTTTTCTTCGTTTTAAAAATTTCTACAAAACTATTTTTCTTTTTATTTTATTTCATA-TT
*
20060581 TTTGCCCTCTTCATTTTTTTATTTTTTCTTGTTTTTCTAA-TTTTTTCGCAAAATTC-TTTTATT
323 TTTG-CCTCTTCA-CTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATT
* * * *
20060644 TCTTCTTTCCA-TTTTTTTTCACACTCCCTTGGATTTTTTGTTTTTTCATAAATCTTTTGGCTTT
386 TCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTT-ATTTTTCATAAATCTTTTGTCTTT
* *
20060708 TCATTTTTATTCTTTTCTTAATTTTTTCACAAA-TTCTTTTTATTTTTTATTTTCATTTTTAAAT
450 TCATTTTTATTCTTTTCATAATTTTTTCACAAATTTCTTTTTATTTTTAATTTTCATTTTTAAAT
* *
20060772 TCTTATAGGTTTTTTTTGTTGCATTTTCTATTTTCGTTTTCATTTTTA
515 TCTTA-AAGTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTA
Statistics
Matches: 1932, Mismatches: 63, Indels: 66
0.94 0.03 0.03
Matches are distributed among these distances:
718 26 0.01
719 43 0.02
720 154 0.08
721 155 0.08
722 53 0.03
723 40 0.02
731 158 0.08
732 159 0.08
733 141 0.07
734 237 0.12
735 55 0.03
737 56 0.03
738 345 0.18
739 153 0.08
741 118 0.06
742 39 0.02
ACGTcount: A:0.17, C:0.11, G:0.05, T:0.67
Consensus pattern (729 bp):
ATTTTTTATTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATTTTTTTCTTTTTTA
TTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTC
TTTGTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCTTTTT
CCTTTTAAATTTTTCTTTTTTTTTACTTATTTTTTCATGAGCTTTCATATTTTCTTTTGTTTTTA
ATTTTTTTCTTCGTTTTAAAAATTTCTACAAAACTATTTTTCTTTTTATTTTATTTCATATTTTT
GCCTCTTCACTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTG
TTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTT
TTATTCTTTTCATAATTTTTTCACAAATTTCTTTTTATTTTTAATTTTCATTTTTAAATTCTTAA
AGTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTT
TAATTTTTTATCTTTGAATTTTTATATTGTTTTCTTATTATATCTTACATGTTTTTCAATTTTTT
GTATTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGACTTTTTTTATTTTTT
ATTTTTGATTCATC
Found at i:20060259 original size:6 final size:7
Alignment explanation
Indices: 20060242--20060311 Score: 59
Period size: 7 Copynumber: 9.6 Consensus size: 7
20060232 ATTTTTGACT
20060242 TTTTTTA
1 TTTTTTA
20060249 TTTTTTA
1 TTTTTTA
*
20060256 TTTTTGA
1 TTTTTTA
** *
20060263 TTCATCA
1 TTTTTTA
20060270 TTTTTTA
1 TTTTTTA
20060277 TTTTCTTA
1 TTTT-TTA
20060285 CTTTTTATA
1 -TTTTT-TA
*
20060294 TTTTATA
1 TTTTTTA
*
20060301 TTTTTTG
1 TTTTTTA
20060308 TTTT
1 TTTT
20060312 GCTTTAATTT
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
7 36 0.72
8 8 0.16
9 6 0.12
ACGTcount: A:0.16, C:0.06, G:0.03, T:0.76
Consensus pattern (7 bp):
TTTTTTA
Found at i:20060519 original size:18 final size:18
Alignment explanation
Indices: 20060498--20060536 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
20060488 TTTCATGTGC
20060498 TTTCA-TATTTTCTTTTGT
1 TTTCACTATTTTC-TTTGT
*
20060516 TTTCACTTTTTTCTTTGT
1 TTTCACTATTTTCTTTGT
20060534 TTT
1 TTT
20060537 AAAAATTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.08, C:0.13, G:0.05, T:0.74
Consensus pattern (18 bp):
TTTCACTATTTTCTTTGT
Done.