Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 38 of 117
Found at i:6729816 original size:22 final size:20
Alignment explanation
Indices: 6729761--6729824 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 20
6729751 TATATATATT
*
6729761 AATAGATAAATAAA-AAAGATT
1 AATAGATAAATAAATAAA-A-A
6729782 AATAGATAAATAATATTAAAAA
1 AATAGATAAATAA-A-TAAAAA
* *
6729804 AATATATATATAAATAAAAA
1 AATAGATAAATAAATAAAAA
6729824 A
1 A
6729825 TAAAACTAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
20 7 0.19
21 14 0.38
22 12 0.32
23 1 0.03
24 3 0.08
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.27
Consensus pattern (20 bp):
AATAGATAAATAAATAAAAA
Found at i:6730522 original size:26 final size:27
Alignment explanation
Indices: 6730487--6730542 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
6730477 TGTGCTAGGA
*
6730487 AAATATTAT-AAAATTCAATAACTAAG
1 AAATAATATAAAAATTCAATAACTAAG
* *
6730513 AAATAATATAAAAATTCAATATCTACG
1 AAATAATATAAAAATTCAATAACTAAG
6730540 AAA
1 AAA
6730543 ATATAGAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 8 0.31
27 18 0.69
ACGTcount: A:0.59, C:0.09, G:0.04, T:0.29
Consensus pattern (27 bp):
AAATAATATAAAAATTCAATAACTAAG
Found at i:6730936 original size:22 final size:21
Alignment explanation
Indices: 6730908--6730951 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
6730898 GTATTAATAT
**
6730908 TATTATATTATTAAATATAAAA
1 TATTATAAAATTAAATA-AAAA
6730930 TATTATAAAATTAAATAAAAA
1 TATTATAAAATTAAATAAAAA
6730951 T
1 T
6730952 TAAATGAGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
TATTATAAAATTAAATAAAAA
Found at i:6741040 original size:19 final size:19
Alignment explanation
Indices: 6741018--6741057 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
6741008 TTGAATAATC
6741018 AATT-AATAAATTATAATAT
1 AATTAAATAAATT-TAATAT
6741037 AATTAAATAAATTTAATAT
1 AATTAAATAAATTTAATAT
6741056 AA
1 AA
6741058 AATTTAATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
AATTAAATAAATTTAATAT
Found at i:6741401 original size:27 final size:27
Alignment explanation
Indices: 6741371--6741423 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
6741361 TTGTTCTAGC
6741371 TTAACCATAAGAATAGCATCAATATAA
1 TTAACCATAAGAATAGCATCAATATAA
*
6741398 TTAATCATAAGAATAGCATCAATATA
1 TTAACCATAAGAATAGCATCAATATA
6741424 TATATATGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.51, C:0.13, G:0.08, T:0.28
Consensus pattern (27 bp):
TTAACCATAAGAATAGCATCAATATAA
Found at i:6741763 original size:2 final size:2
Alignment explanation
Indices: 6741756--6741785 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
6741746 CACATATGTG
6741756 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6741786 GTTTGTATCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6750134 original size:58 final size:57
Alignment explanation
Indices: 6749947--6750169 Score: 243
Period size: 58 Copynumber: 3.8 Consensus size: 57
6749937 TGCTTTTATA
* * *
6749947 CAAGAAAAATTGATACTTTCAACTTTTCCTT-AAAATATTTTTTTGAAATTTCAATTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTAGAAAATT-ATTTT
* * * *
6750004 CGAGAAAAATTGATACTTTCAACTTTTTCTAAAAAAAAAATATCATTTTTTAGAAAATCATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCT-----TAAAA-AT-ATTTTTTAGAAAATTATTTT
* *
6750068 CAA-AGAAAATTGATACTTTCAACTTTTTCTTGAAAATATTTTTTAGAAAACTTATTTT
1 CAAGA-AAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTAGAAAA-TTATTTT
* *
6750126 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTT
6750170 TTTTAAAATT
Statistics
Matches: 140, Mismatches: 15, Indels: 21
0.80 0.09 0.12
Matches are distributed among these distances:
57 41 0.29
58 47 0.34
59 3 0.02
63 4 0.03
64 33 0.24
65 12 0.09
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.43
Consensus pattern (57 bp):
CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTAGAAAATTATTTT
Found at i:6750207 original size:6 final size:6
Alignment explanation
Indices: 6750198--6750244 Score: 71
Period size: 6 Copynumber: 8.2 Consensus size: 6
6750188 AGAAAATCAA
*
6750198 AAAAAT -AAAAT AAAAAT AAAGAT AAAAAT AAAAAT -AAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
6750244 A
1 A
6750245 CTAAATAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
5 10 0.27
6 27 0.73
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:6750209 original size:5 final size:5
Alignment explanation
Indices: 6750190--6750241 Score: 52
Period size: 5 Copynumber: 9.8 Consensus size: 5
6750180 TTATTTAAAG
*
6750190 AAAAT CAAA- AAAAT AAAAT AAAAAT AAAGAT AAAAAT AAAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT -AAAAT AAA-AT -AAAAT -AAAAT AAAAT
6750238 AAAA
1 AAAA
6750242 ATACTAAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
4 3 0.07
5 20 0.49
6 15 0.37
7 3 0.07
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:6750242 original size:12 final size:11
Alignment explanation
Indices: 6750198--6750241 Score: 63
Period size: 11 Copynumber: 3.9 Consensus size: 11
6750188 AGAAAATCAA
6750198 AAAAATAAAAT
1 AAAAATAAAAT
6750209 AAAAATAAAGAT
1 AAAAATAAA-AT
6750221 AAAAATAAAA-
1 AAAAATAAAAT
6750231 ATAAAATAAAA
1 A-AAAATAAAA
6750242 ATACTAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
10 1 0.03
11 19 0.61
12 11 0.35
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:6750274 original size:3 final size:3
Alignment explanation
Indices: 6750266--6750324 Score: 93
Period size: 3 Copynumber: 19.7 Consensus size: 3
6750256 TAATCCAATC
*
6750266 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA- AAGA AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT
6750311 AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AA
6750325 ATAAGAAAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
2 2 0.04
3 49 0.92
4 2 0.04
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:6750281 original size:12 final size:12
Alignment explanation
Indices: 6750201--6750324 Score: 94
Period size: 12 Copynumber: 10.2 Consensus size: 12
6750191 AAATCAAAAA
*
6750201 AATAA-AATAAA
1 AATAATAATAAT
*
6750212 AATAA-AGATAAA
1 AATAATA-ATAAT
*
6750224 AATAAAAATAA-
1 AATAATAATAAT
* *
6750235 AATAAAAATACT
1 AATAATAATAAT
**
6750247 AAATAATTCTAAT
1 -AATAATAATAAT
6750260 CCAATCAATAATAAT
1 --AAT-AATAATAAT
6750275 AATAATAATAAT
1 AATAATAATAAT
6750287 AATAATAATAA-
1 AATAATAATAAT
*
6750298 AAGAAATAATAAT
1 AA-TAATAATAAT
6750311 AATAATAATAAT
1 AATAATAATAAT
6750323 AA
1 AA
6750325 ATAAGAAAAA
Statistics
Matches: 95, Mismatches: 10, Indels: 15
0.79 0.08 0.12
Matches are distributed among these distances:
11 18 0.19
12 53 0.56
13 14 0.15
14 3 0.03
15 7 0.07
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.26
Consensus pattern (12 bp):
AATAATAATAAT
Found at i:6750293 original size:18 final size:18
Alignment explanation
Indices: 6750201--6750324 Score: 94
Period size: 18 Copynumber: 6.8 Consensus size: 18
6750191 AAATCAAAAA
*
6750201 AATAA-AATAAAAATAA-
1 AATAATAATAATAATAAT
* *
6750217 AGATAAAAATAAAAATAA-
1 A-ATAATAATAATAATAAT
* *
6750235 AATAAAAATACTAAATAAT
1 AATAATAATAAT-AATAAT
**
6750254 TCTAATCCAATCAATAATAAT
1 AATAAT--AAT-AATAATAAT
6750275 AATAATAATAATAATAAT
1 AATAATAATAATAATAAT
*
6750293 AATAA-AAGAAATAATAAT
1 AATAATAA-TAATAATAAT
6750311 AATAATAATAATAA
1 AATAATAATAATAA
6750325 ATAAGAAAAA
Statistics
Matches: 89, Mismatches: 10, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
16 1 0.01
17 15 0.17
18 50 0.56
19 8 0.09
21 13 0.15
22 2 0.02
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.26
Consensus pattern (18 bp):
AATAATAATAATAATAAT
Found at i:6750799 original size:23 final size:24
Alignment explanation
Indices: 6750750--6750799 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
6750740 CCGGATTCTG
* * *
6750750 AAAAAAATTTAAAAATTTTTCAGA
1 AAAAAAATTTAAAAATTTCTAAAA
*
6750774 AAAAAAATTTCAAAA-TTCTAAAA
1 AAAAAAATTTAAAAATTTCTAAAA
6750797 AAA
1 AAA
6750800 TTTTCACAGA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.64, C:0.06, G:0.02, T:0.28
Consensus pattern (24 bp):
AAAAAAATTTAAAAATTTCTAAAA
Found at i:6750812 original size:21 final size:21
Alignment explanation
Indices: 6750773--6750817 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
6750763 AATTTTTCAG
6750773 AAAAAAAATTTCAAAATT-CT
1 AAAAAAAATTTCAAAATTCCT
* *
6750793 AAAAAAATTTTCACAGATTCCT
1 AAAAAAAATTTCA-AAATTCCT
6750815 AAA
1 AAA
6750818 GCTATATCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 12 0.57
21 4 0.19
22 5 0.24
ACGTcount: A:0.56, C:0.13, G:0.02, T:0.29
Consensus pattern (21 bp):
AAAAAAAATTTCAAAATTCCT
Found at i:6751106 original size:26 final size:25
Alignment explanation
Indices: 6751077--6751263 Score: 130
Period size: 23 Copynumber: 7.6 Consensus size: 25
6751067 AAAAAAAAAG
6751077 AGATAAATATAACAAAAAATATTAAT
1 AGATAAATATAA-AAAAAATATTAAT
6751103 AGATAAATA-AAAATAAAA-A-TAAT
1 AGATAAATATAAAA-AAAATATTAAT
*
6751126 AGATAAATATAAAAAATATACATTAAT
1 AGATAAATATAAAAAA-A-ATATTAAT
*
6751153 AGATAAATAATAAAAAATATATTAAT
1 AGATAAAT-ATAAAAAAAATATTAAT
* *
6751179 AAAT-AATA-AAAATGTATATATATTAAT
1 AGATAAATATAAAA---A-AAATATTAAT
*
6751206 AGAT-AA-AT--AAAAAAGATTAAT
1 AGATAAATATAAAAAAAATATTAAT
*
6751227 AGATAAATA-ATAATAAAATA-T-AT
1 AGATAAATATA-AAAAAAATATTAAT
*
6751250 ATATAAATA-AAAAA
1 AGATAAATATAAAAA
6751264 TAAAACTAAA
Statistics
Matches: 134, Mismatches: 10, Indels: 38
0.74 0.05 0.21
Matches are distributed among these distances:
21 12 0.09
22 6 0.04
23 31 0.23
24 10 0.07
25 18 0.13
26 22 0.16
27 27 0.20
28 8 0.06
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.28
Consensus pattern (25 bp):
AGATAAATATAAAAAAAATATTAAT
Found at i:6751120 original size:27 final size:26
Alignment explanation
Indices: 6751077--6751219 Score: 143
Period size: 26 Copynumber: 5.5 Consensus size: 26
6751067 AAAAAAAAAG
*
6751077 AGATAAATATAACAAAAA-ATATTAAT
1 AGATAAATA-AAAAAAAATATATTAAT
*
6751103 AGATAAATAAAAATAAA-A-A-TAAT
1 AGATAAATAAAAAAAAATATATTAAT
* *
6751126 AGATAAATATAAAAAATATACATTAAT
1 AGATAAATA-AAAAAAAATATATTAAT
*
6751153 AGATAAATAATAAAAAATATATTAAT
1 AGATAAATAAAAAAAAATATATTAAT
* * *
6751179 AAAT-AATAAAAATGTATATATATTAAT
1 AGATAAATAAAAA--AAAATATATTAAT
6751206 AGATAAATAAAAAA
1 AGATAAATAAAAAA
6751220 GATTAATAGA
Statistics
Matches: 97, Mismatches: 13, Indels: 14
0.78 0.10 0.11
Matches are distributed among these distances:
23 13 0.13
24 7 0.07
25 15 0.15
26 27 0.28
27 27 0.28
28 8 0.08
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.28
Consensus pattern (26 bp):
AGATAAATAAAAAAAAATATATTAAT
Found at i:6751156 original size:50 final size:51
Alignment explanation
Indices: 6751065--6751277 Score: 203
Period size: 50 Copynumber: 4.2 Consensus size: 51
6751055 ACAAACCAAC
*
6751065 AAAAAAAAA-AAGAGATAAAT-ATAACAAAA-A-ATATTAATAGATAAATA
1 AAAAAAAAATAATAGATAAATAATAACAAAATATATATTAATAGATAAATA
*
6751112 AAAATAAAAATAATAGATAAAT-ATAA-AAAATATACATTAATAGATAAATA
1 AAAA-AAAAATAATAGATAAATAATAACAAAATATATATTAATAGATAAATA
* *
6751162 ATAAAAAATATATTA-ATAAATAATAA-AAATGTATATATATTAATAGATAAAT-
1 A-AAAAAAAATAATAGATAAATAATAACAAA---ATATATATTAATAGATAAATA
* * * *
6751214 AAAAAAGATTAATAGATAAATAATAATAAAATATATATATAAATA-AAAAATA
1 AAAAAAAAATAATAGATAAATAATAACAAAATATATAT-T-AATAGATAAATA
*
6751266 AAACTAAAAATA
1 AAA-AAAAAATA
6751278 CAAATGGGTT
Statistics
Matches: 138, Mismatches: 13, Indels: 24
0.79 0.07 0.14
Matches are distributed among these distances:
47 4 0.03
48 9 0.07
49 21 0.15
50 40 0.29
51 18 0.13
52 19 0.14
53 27 0.20
ACGTcount: A:0.68, C:0.01, G:0.04, T:0.26
Consensus pattern (51 bp):
AAAAAAAAATAATAGATAAATAATAACAAAATATATATTAATAGATAAATA
Found at i:6751225 original size:21 final size:20
Alignment explanation
Indices: 6751200--6751263 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 20
6751190 ATGTATATAT
6751200 ATTAATAGATAAATAAAAAA
1 ATTAATAGATAAATAAAAAA
6751220 GATTAATAGATAAATAATAATAA
1 -ATTAATAGATAAATAA-AA-AA
* *
6751243 AATATATATATAAATAAAAAA
1 ATTA-ATAGATAAATAAAAAA
6751264 TAAAACTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
21 18 0.47
22 7 0.18
23 13 0.34
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (20 bp):
ATTAATAGATAAATAAAAAA
Found at i:6751241 original size:27 final size:26
Alignment explanation
Indices: 6751077--6751268 Score: 131
Period size: 27 Copynumber: 7.6 Consensus size: 26
6751067 AAAAAAAAAG
6751077 AGATAAAT-ATAACAAAAAATATTAAT
1 AGATAAATAATAA-AAAAAATATTAAT
*
6751103 AGATAAATAA-AAATAAAA-A-TAAT
1 AGATAAATAATAAAAAAAATATTAAT
*
6751126 AGATAAAT-ATAAAAAATATACATTAAT
1 AGATAAATAATAAAAAA-A-ATATTAAT
*
6751153 AGATAAATAATAAAAAATATATTAAT
1 AGATAAATAATAAAAAAAATATTAAT
* * *
6751179 AAAT-AATAA-AAATGTATATATATTAAT
1 AGATAAATAATAAA---AAAAATATTAAT
*
6751206 AGAT--A-AAT--AAAAAAGATTAAT
1 AGATAAATAATAAAAAAAATATTAAT
*
6751227 AGATAAATAAT-AATAAAATATATATAT
1 AGATAAATAATAAAAAAAATAT-TA-AT
* *
6751254 AAATAAAAAATAAAA
1 AGATAAATAATAAAA
6751269 CTAAAAATAC
Statistics
Matches: 133, Mismatches: 15, Indels: 34
0.73 0.08 0.19
Matches are distributed among these distances:
21 13 0.10
22 1 0.01
23 18 0.14
24 9 0.07
25 20 0.15
26 24 0.18
27 38 0.29
28 10 0.08
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.28
Consensus pattern (26 bp):
AGATAAATAATAAAAAAAATATTAAT
Found at i:6751492 original size:30 final size:30
Alignment explanation
Indices: 6751418--6751493 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
6751408 TTTTGTTTAA
* *
6751418 TTAATGGTTCAATTAAATGAAAATAAATGT
1 TTAATGATTCAATTAAATGAAAATAAATAT
* * **
6751448 TTAA-AAGTTTAATTATGTGAAAATAAATAT
1 TTAATGA-TTCAATTAAATGAAAATAAATAT
6751478 TTAATGATTCAATTAA
1 TTAATGATTCAATTAA
6751494 TTTGAAATAA
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
30 34 0.97
31 1 0.03
ACGTcount: A:0.47, C:0.03, G:0.11, T:0.39
Consensus pattern (30 bp):
TTAATGATTCAATTAAATGAAAATAAATAT
Found at i:6751970 original size:28 final size:28
Alignment explanation
Indices: 6751930--6751991 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
6751920 TGGTGCTAGG
*
6751930 GAAAATATTATAAAAATTCAATAACTAA
1 GAAAATAATATAAAAATTCAATAACTAA
* *
6751958 GAAAATAATATAAAAATTCAATATCTAC
1 GAAAATAATATAAAAATTCAATAACTAA
6751986 GAAAAT
1 GAAAAT
6751992 GATAGAATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.60, C:0.08, G:0.05, T:0.27
Consensus pattern (28 bp):
GAAAATAATATAAAAATTCAATAACTAA
Found at i:6752004 original size:28 final size:28
Alignment explanation
Indices: 6751930--6751998 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 28
6751920 TGGTGCTAGG
* *
6751930 GAAAATATTATAAAAATTCAATAACTAA
1 GAAAATAATAGAAAAATTCAATAACTAA
* * *
6751958 GAAAATAATATAAAAATTCAATATCTAC
1 GAAAATAATAGAAAAATTCAATAACTAA
*
6751986 GAAAATGATAGAA
1 GAAAATAATAGAA
6751999 TTATTCGATC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.26
Consensus pattern (28 bp):
GAAAATAATAGAAAAATTCAATAACTAA
Found at i:6752387 original size:22 final size:21
Alignment explanation
Indices: 6752359--6752402 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
6752349 ATATTAATAT
**
6752359 TATTATATTATTAAATATAAAA
1 TATTATAAAATTAAATA-AAAA
6752381 TATTATAAAATTAAATAAAAA
1 TATTATAAAATTAAATAAAAA
6752402 T
1 T
6752403 TAAATGAGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
TATTATAAAATTAAATAAAAA
Found at i:6752631 original size:16 final size:17
Alignment explanation
Indices: 6752610--6752642 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
6752600 CCTAATCAAA
6752610 TTTTTA-TATTTAAATT
1 TTTTTATTATTTAAATT
*
6752626 TTTTTATTATTTTAATT
1 TTTTTATTATTTAAATT
6752643 AATAAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTTATTATTTAAATT
Found at i:6756171 original size:13 final size:13
Alignment explanation
Indices: 6756153--6756178 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6756143 TGATTTTATT
6756153 TGTGATTAAATAA
1 TGTGATTAAATAA
6756166 TGTGATTAAATAA
1 TGTGATTAAATAA
6756179 CTATGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTGATTAAATAA
Found at i:6758564 original size:2 final size:2
Alignment explanation
Indices: 6758557--6758604 Score: 55
Period size: 2 Copynumber: 24.5 Consensus size: 2
6758547 AAGATGTTTA
**
6758557 AT AT AT AT AT AT AT AT AT AT AT AT AT GC AT A- ACT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT
6758598 AT AT AT A
1 AT AT AT A
6758605 CAAAAACATG
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
1 2 0.05
2 37 0.95
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (2 bp):
AT
Found at i:6759536 original size:23 final size:21
Alignment explanation
Indices: 6759504--6759548 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 21
6759494 ACATACATTA
*
6759504 ATAATGAAAAAACTTTATTTTTT
1 ATAATAAAAAAAC--TATTTTTT
*
6759527 ATAATAAAAATACTATTTTTT
1 ATAATAAAAAAACTATTTTTT
6759548 A
1 A
6759549 ATTTAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 9 0.45
23 11 0.55
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (21 bp):
ATAATAAAAAAACTATTTTTT
Found at i:6759590 original size:24 final size:24
Alignment explanation
Indices: 6759545--6759595 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 24
6759535 AATACTATTT
*
6759545 TTTAATTTAAAAATATTAATGATTA
1 TTTAATTTAAAAAAATTAATGA-TA
6759570 TTTAA-TTAAAATAAATT-ATGATA
1 TTTAATTTAAAA-AAATTAATGATA
6759593 TTT
1 TTT
6759596 TTTAATCTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 5 0.21
24 10 0.42
25 9 0.38
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (24 bp):
TTTAATTTAAAAAAATTAATGATA
Found at i:6760606 original size:32 final size:32
Alignment explanation
Indices: 6760570--6760643 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
6760560 ATAAGGGAAG
* * *
6760570 AATGAG-GGGGTCTATATGGGTGTATATGTTAA
1 AATGAGAGGGTTC-ATATAGGTATATATGTTAA
* *
6760602 AATGAGATGGTTCATATAGGTATATATGTTAG
1 AATGAGAGGGTTCATATAGGTATATATGTTAA
6760634 AATGAGAGGG
1 AATGAGAGGG
6760644 CCCGTATGGG
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
32 31 0.89
33 4 0.11
ACGTcount: A:0.32, C:0.03, G:0.32, T:0.32
Consensus pattern (32 bp):
AATGAGAGGGTTCATATAGGTATATATGTTAA
Found at i:6760749 original size:25 final size:26
Alignment explanation
Indices: 6760701--6760751 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
6760691 AGAGAATAAG
*
6760701 AGAGTCCATGGATATAATGCTTGTTAA
1 AGAGTCCAT-GATATAATACTTGTTAA
*
6760728 AGAGTCCAT-ATATAATATTTGTTA
1 AGAGTCCATGATATAATACTTGTTA
6760752 TGTTTGTGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 13 0.59
27 9 0.41
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (26 bp):
AGAGTCCATGATATAATACTTGTTAA
Found at i:6762832 original size:21 final size:21
Alignment explanation
Indices: 6762798--6762837 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
6762788 TGTTCTTTTT
*
6762798 TTTTTTTTTGATAAATAAAATA
1 TTTTTATTTGATAAA-AAAATA
6762820 TTTTTATTT-ATAAAAAAA
1 TTTTTATTTGATAAAAAAA
6762838 GTCAATGAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 5 0.29
22 8 0.47
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (21 bp):
TTTTTATTTGATAAAAAAATA
Found at i:6764984 original size:22 final size:21
Alignment explanation
Indices: 6764959--6765025 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 21
6764949 GATATTTATA
*
6764959 TATATTTATATATAAATAATTT
1 TATATTTATAT-TAAAAAATTT
* **
6764981 TATAATTATATTTAAAAAATAA
1 TATATTTATA-TTAAAAAATTT
6765003 TAT-TTTATATTAAAAAATTT
1 TATATTTATATTAAAAAATTT
6765023 TAT
1 TAT
6765026 CTTAAAAAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
20 12 0.32
21 5 0.14
22 19 0.51
23 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TATATTTATATTAAAAAATTT
Found at i:6765022 original size:15 final size:15
Alignment explanation
Indices: 6765004--6765035 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
6764994 AAAAAATAAT
6765004 ATTTTATATTAAAAA
1 ATTTTATATTAAAAA
*
6765019 ATTTTATCTTAAAAA
1 ATTTTATATTAAAAA
6765034 AT
1 AT
6765036 ATTTTATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTTTATATTAAAAA
Found at i:6765039 original size:17 final size:17
Alignment explanation
Indices: 6764996--6765043 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
6764986 TTATATTTAA
*
6764996 AAAATAATATTTTATATT
1 AAAA-AATATTTTATCTT
6765014 -AAAAA-ATTTTATCTT
1 AAAAAATATTTTATCTT
6765029 AAAAAATATTTTATC
1 AAAAAATATTTTATC
6765044 AATTTTAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 9 0.33
16 7 0.26
17 11 0.41
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (17 bp):
AAAAAATATTTTATCTT
Found at i:6766602 original size:6 final size:6
Alignment explanation
Indices: 6766591--6766678 Score: 60
Period size: 6 Copynumber: 15.3 Consensus size: 6
6766581 TAAATTACTC
* * *
6766591 AATAAA AATAAA TAAT-AA AAT-AA ATTAAA AATACA AATACA AAT--A
1 AATAAA AATAAA -AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* * * * *
6766636 AATTAA ATTAAA AATATA AATATA AATATA AAT-AA AATAAA AA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AA
6766679 ACTTAAAATA
Statistics
Matches: 69, Mismatches: 8, Indels: 10
0.79 0.09 0.11
Matches are distributed among these distances:
4 4 0.06
5 11 0.16
6 51 0.74
7 3 0.04
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (6 bp):
AATAAA
Found at i:6766610 original size:12 final size:12
Alignment explanation
Indices: 6766572--6766671 Score: 52
Period size: 12 Copynumber: 8.5 Consensus size: 12
6766562 CAAAATATTT
6766572 AATAAATAAT-A
1 AATAAATAATAA
* *
6766583 AATTACTCAATAAA
1 AATAAAT-AAT-AA
6766597 AATAAATAATAA
1 AATAAATAATAA
*
6766609 AATAAATTA-AA
1 AATAAATAATAA
*
6766620 AATACA-AATACA
1 AATAAATAATA-A
6766632 AATAAAT--TAA
1 AATAAATAATAA
*
6766642 ATTAAA-AATATA
1 AATAAATAATA-A
*
6766654 AATATA-AATATA
1 AATAAATAATA-A
6766666 AATAAA
1 AATAAA
6766672 ATAAAAAACT
Statistics
Matches: 68, Mismatches: 12, Indels: 17
0.70 0.12 0.18
Matches are distributed among these distances:
10 7 0.10
11 17 0.25
12 35 0.51
13 3 0.04
14 6 0.09
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (12 bp):
AATAAATAATAA
Found at i:6766623 original size:23 final size:23
Alignment explanation
Indices: 6766593--6766701 Score: 79
Period size: 23 Copynumber: 4.8 Consensus size: 23
6766583 AATTACTCAA
6766593 TAAAAATAAATAATAAAATAAAT
1 TAAAAATAAATAATAAAATAAAT
*
6766616 TAAAAATACA-AATACAAATAAAT
1 TAAAAATAAATAATA-AAATAAAT
6766639 TAAATTAA-AAAT-ATAAATATAAA-
1 TAAA--AATAAATAATAAA-ATAAAT
* *
6766662 TATAAAT-AA-AATAAAA-AACT
1 TAAAAATAAATAATAAAATAAAT
*
6766682 TAAAATATAAAATGATAAAA
1 TAAAA-AT-AAATAATAAAA
6766702 AATAAAAAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 23
0.70 0.06 0.24
Matches are distributed among these distances:
19 2 0.03
20 5 0.07
21 11 0.16
22 4 0.06
23 28 0.41
24 16 0.24
25 2 0.03
ACGTcount: A:0.71, C:0.03, G:0.01, T:0.26
Consensus pattern (23 bp):
TAAAAATAAATAATAAAATAAAT
Found at i:6766635 original size:28 final size:28
Alignment explanation
Indices: 6766604--6766678 Score: 105
Period size: 28 Copynumber: 2.6 Consensus size: 28
6766594 AAAAATAAAT
6766604 AATAAAATAAATTAAAAATACAAATACA
1 AATAAAATAAATTAAAAATACAAATACA
* * *
6766632 AATAAATTAAATTAAAAATATAAATATA
1 AATAAAATAAATTAAAAATACAAATACA
*
6766660 AATATAAATAAAATAAAAA
1 AATA-AAATAAATTAAAAA
6766679 ACTTAAAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 29 0.71
29 12 0.29
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (28 bp):
AATAAAATAAATTAAAAATACAAATACA
Found at i:6766711 original size:33 final size:31
Alignment explanation
Indices: 6766592--6766716 Score: 87
Period size: 33 Copynumber: 3.9 Consensus size: 31
6766582 AAATTACTCA
* * *
6766592 ATAAAAATAAATAATAAAATAAA-TTAAAAAT
1 ATAAATATAAATAAAAAAAAAAACTT-AAAAT
* *
6766623 ACAAATACAAATAAATTAAATTAAAAA--TATAAAT
1 ATAAATATAAATAAA--AAA--AAAAACTTA-AAAT
*
6766657 ATAAATATAAATAAAATAAAAAACTTAAAAT
1 ATAAATATAAATAAAAAAAAAAACTTAAAAT
6766688 ATAAAATGATAAA-AAATAAAAAAAACTTA
1 AT-AAAT-ATAAATAAA-AAAAAAAACTTA
6766717 CAATCGGATT
Statistics
Matches: 75, Mismatches: 9, Indels: 18
0.74 0.09 0.18
Matches are distributed among these distances:
30 5 0.07
31 17 0.23
32 11 0.15
33 20 0.27
34 18 0.24
35 4 0.05
ACGTcount: A:0.71, C:0.03, G:0.01, T:0.25
Consensus pattern (31 bp):
ATAAATATAAATAAAAAAAAAAACTTAAAAT
Found at i:6768972 original size:10 final size:10
Alignment explanation
Indices: 6768951--6768979 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
6768941 ACAAAAAATG
6768951 ATTAAT-AAA
1 ATTAATAAAA
6768960 ATTAATAAAA
1 ATTAATAAAA
6768970 ATTAATAAAA
1 ATTAATAAAA
6768980 GTATAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.32
10 13 0.68
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (10 bp):
ATTAATAAAA
Found at i:6769651 original size:18 final size:18
Alignment explanation
Indices: 6769613--6769652 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
6769603 ATGGAATAAC
* *
6769613 AAAAGAAAATAAATAATA
1 AAAAGAAAATAAAAAACA
*
6769631 AAAAGATAATAAAAAACA
1 AAAAGAAAATAAAAAACA
6769649 AAAA
1 AAAA
6769653 AACCAAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.80, C:0.03, G:0.05, T:0.12
Consensus pattern (18 bp):
AAAAGAAAATAAAAAACA
Found at i:6770171 original size:19 final size:19
Alignment explanation
Indices: 6770137--6770191 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
6770127 TGATTCCTTT
6770137 CAATAAAAAA-ACAAAAAAC
1 CAATAAAAAATA-AAAAAAC
6770156 CAATAAAAAAT-AAAAAAC
1 CAATAAAAAATAAAAAAAC
* **
6770174 AAATTGAAAATAAAAAAA
1 CAATAAAAAATAAAAAAA
6770192 AAGTTTCACA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
18 15 0.48
19 16 0.52
ACGTcount: A:0.78, C:0.09, G:0.02, T:0.11
Consensus pattern (19 bp):
CAATAAAAAATAAAAAAAC
Found at i:6772114 original size:21 final size:21
Alignment explanation
Indices: 6772075--6772115 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
6772065 GCTTGTCAGG
* **
6772075 AAATAATTAAAAATTGAAAAA
1 AAATAAATAAAAAAAGAAAAA
6772096 AAATAAATAAAAAAAGAAAA
1 AAATAAATAAAAAAAGAAAA
6772116 TTTAAGATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (21 bp):
AAATAAATAAAAAAAGAAAAA
Found at i:6781491 original size:29 final size:29
Alignment explanation
Indices: 6781454--6781512 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
6781444 AATTAATAAA
*
6781454 TTTATAATTTAAATATCACATTAAAAATT
1 TTTAAAATTTAAATATCACATTAAAAATT
* *
6781483 TTTAAAATTTAAATATCATATTAAATATT
1 TTTAAAATTTAAATATCACATTAAAAATT
6781512 T
1 T
6781513 CACTATAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (29 bp):
TTTAAAATTTAAATATCACATTAAAAATT
Found at i:6781946 original size:15 final size:13
Alignment explanation
Indices: 6781914--6781938 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6781904 GGATTGATTC
6781914 AATTTTTATTCTT
1 AATTTTTATTCTT
6781927 AATTTTTATTCT
1 AATTTTTATTCT
6781939 CATAATTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (13 bp):
AATTTTTATTCTT
Found at i:6788722 original size:74 final size:74
Alignment explanation
Indices: 6788601--6788843 Score: 308
Period size: 74 Copynumber: 3.3 Consensus size: 74
6788591 GTATGACTTA
* *
6788601 TTCTTGTTTGTAGCAGAGGAATCGCTACCTTACCCAGCTAGAGGAATCAAAATTTCAGCGTAGAT
1 TTCTTGTTTGTAGCAGAGGAATCGCTACCTTACCCAGCTAGAGGAATCAAAGTTTCAGCGAAGAT
*
6788666 CGAAGAAAC
66 CGAAGAAAT
* ** * *
6788675 TTCTTGTTTGTAGCAGAGGAA-CTGCTACTTTACTTAGCTAGAGGAATCGAAGTTTTAGCGAAGA
1 TTCTTGTTTGTAGCAGAGGAATC-GCTACCTTACCCAGCTAGAGGAATCAAAGTTTCAGCGAAGA
6788739 TCGAAGAAAT
65 TCGAAGAAAT
** * * * * * *
6788749 TTCTCCTTTATAGCAAAGCAATCGCTACCTCACCCAGCTACAAGAATCAAAGTTTCAGCGAAGAT
1 TTCTTGTTTGTAGCAGAGGAATCGCTACCTTACCCAGCTAGAGGAATCAAAGTTTCAGCGAAGAT
6788814 CGAAGAAAT
66 CGAAGAAAT
* *
6788823 TTCTTGATTGTAGCTGAGGAA
1 TTCTTGTTTGTAGCAGAGGAA
6788844 ATCGAACCAG
Statistics
Matches: 139, Mismatches: 28, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
73 1 0.01
74 137 0.99
75 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (74 bp):
TTCTTGTTTGTAGCAGAGGAATCGCTACCTTACCCAGCTAGAGGAATCAAAGTTTCAGCGAAGAT
CGAAGAAAT
Found at i:6793557 original size:2 final size:2
Alignment explanation
Indices: 6793550--6793575 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6793540 ATGAGTGCAA
6793550 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
6793576 GGAGTATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6794688 original size:25 final size:26
Alignment explanation
Indices: 6794636--6794690 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
6794626 AATAAGTATT
6794636 AATTATCAAATGATAGAATTTATAAA
1 AATTATCAAATGATAGAATTTATAAA
* *
6794662 AATT-TCAAATGGTA-AATTTCTATAA
1 AATTATCAAATGATAGAATTTATA-AA
6794687 AATT
1 AATT
6794691 CTTAGGTGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 7 0.27
25 15 0.58
26 4 0.15
ACGTcount: A:0.49, C:0.05, G:0.07, T:0.38
Consensus pattern (26 bp):
AATTATCAAATGATAGAATTTATAAA
Found at i:6798456 original size:12 final size:12
Alignment explanation
Indices: 6798435--6798468 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
6798425 TCTTAAAGAT
*
6798435 AAAAAGGAAAAA
1 AAAAAAGAAAAA
6798447 AAAAAAGAAAAA
1 AAAAAAGAAAAA
*
6798459 AGAAAAGAAA
1 AAAAAAGAAA
6798469 CCATGAATGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (12 bp):
AAAAAAGAAAAA
Found at i:6798871 original size:17 final size:17
Alignment explanation
Indices: 6798829--6798888 Score: 52
Period size: 17 Copynumber: 3.6 Consensus size: 17
6798819 TAATGGATGG
**
6798829 AAAAAT-AAAAAAGGGA
1 AAAAATGAAAAAAAAGA
6798845 AAACAA-GAAAAAAAAGA
1 AAA-AATGAAAAAAAAGA
* * *
6798862 GAAAATGAAAGAATAGA
1 AAAAATGAAAAAAAAGA
6798879 AAAAATGAAA
1 AAAAATGAAA
6798889 TGAGAGAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
16 5 0.14
17 30 0.86
ACGTcount: A:0.75, C:0.02, G:0.17, T:0.07
Consensus pattern (17 bp):
AAAAATGAAAAAAAAGA
Found at i:6799833 original size:150 final size:149
Alignment explanation
Indices: 6799460--6799822 Score: 498
Period size: 150 Copynumber: 2.4 Consensus size: 149
6799450 TCAAATGATA
* * *
6799460 AAAATAGTATGGATCAATGGACAAAATTTATTCTGAATGGCTAGTGTTGAAAAGCCTGTGAATGG
1 AAAATAGTATGGATCAATGGACAAAATTTGTTCTGAATGGCTAGTGCTAAAAAGCCTGTGAATGG
* * * * *
6799525 TGATTAAGTGATGAACATGATGTGGATCAGAAGATAAAATTTATTTTGAAATGGCTAGTGCTGAG
66 TGATCAAGTGATGAACATAATGTGGATCAGAAGATAAAATTTATTCTGAAATGACTAGTGCTAAG
*
6799590 AAGCTTGTGAATTATGGTG
131 AAGCTTATGAATTATGGTG
* * * * *
6799609 AAAATAGTATGGATCAATGGACAAAATTTGTTCTGGAATGGTTAATGCTGAGAAA-CCTATAAAT
1 AAAATAGTATGGATCAATGGACAAAATTTGTTCT-GAATGGCTAGTGCT-AAAAAGCCTGTGAAT
* *
6799673 GGTGATCAAGTGATGAACATAATGTGGATTA-AAGGATAAAATTTATTCTGAAATGATTAGTGCT
64 GGTGATCAAGTGATGAACATAATGTGGATCAGAA-GATAAAATTTATTCTGAAATGACTAGTGCT
6799737 AAGAAG-TCTATGAATTATGGTG
128 AAGAAGCT-TATGAATTATGGTG
**
6799759 AAAATAGTATGGATCAATGGACAAAATTTGTTCTGATATTACTAGTGCTAAAAAGCCTGTGAAT
1 AAAATAGTATGGATCAATGGACAAAATTTGTTCTGA-ATGGCTAGTGCTAAAAAGCCTGTGAAT
6799823 TGCAATCAAG
Statistics
Matches: 185, Mismatches: 23, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
149 42 0.23
150 140 0.76
151 3 0.02
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.31
Consensus pattern (149 bp):
AAAATAGTATGGATCAATGGACAAAATTTGTTCTGAATGGCTAGTGCTAAAAAGCCTGTGAATGG
TGATCAAGTGATGAACATAATGTGGATCAGAAGATAAAATTTATTCTGAAATGACTAGTGCTAAG
AAGCTTATGAATTATGGTG
Found at i:6800245 original size:46 final size:46
Alignment explanation
Indices: 6800195--6800729 Score: 525
Period size: 46 Copynumber: 11.9 Consensus size: 46
6800185 ATCTTAAATC
* *
6800195 TTCAAATGAAAATCTTTGAGTCTTAAATAAGAATCTTTAAGACTTT
1 TTCAAATGAAAATCTTTGAGTCTTAAATGAGAATCTTTAAGACGTT
* * * * *
6800241 TTCAAATGAGAATCTTTCAGTCTTAAATGAAAATTTTTAAAACGTT
1 TTCAAATGAAAATCTTTGAGTCTTAAATGAGAATCTTTAAGACGTT
* * *
6800287 TTCAAGTGATAACCTTTGAGTCTTAAATGAGAATCTTTAAGACGTT
1 TTCAAATGAAAATCTTTGAGTCTTAAATGAGAATCTTTAAGACGTT
* **
6800333 TTCAAATGAAAAACTTTGAGTCTTAAATGAGAATCTTTAAGATATT
1 TTCAAATGAAAATCTTTGAGTCTTAAATGAGAATCTTTAAGACGTT
* * * *
6800379 TTCAAATGAGAACCATTGAATCTTAAATGAGAATCTTTAAGACGTT
1 TTCAAATGAAAATCTTTGAGTCTTAAATGAGAATCTTTAAGACGTT
* * * *
6800425 TTCAAATGAGAACCTTTGAGTTTTAAATGAGAATCTTTAAGACATT
1 TTCAAATGAAAATCTTTGAGTCTTAAATGAGAATCTTTAAGACGTT
* *
6800471 TTCAAATGAGAATCTTTGAGTC-----------TCTTTAAGACATT
1 TTCAAATGAAAATCTTTGAGTCTTAAATGAGAATCTTTAAGACGTT
* *
6800506 TTCAAATGAAAAAT-TTTGAATCTTAAATGAGAATCTTTAAGACATT
1 TTCAAATG-AAAATCTTTGAGTCTTAAATGAGAATCTTTAAGACGTT
* *
6800552 TTCAAATGAGAACAT-TTT-AGTCTTAAATGAAAATCTTTAAAACGTT
1 TTCAAATGA-AA-ATCTTTGAGTCTTAAATGAGAATCTTTAAGACGTT
* * * * **
6800598 TTCAAAT-AAGAACCTTTGAGTTTTAAATGAGAATTTTTAAAATATT
1 TTCAAATGAA-AATCTTTGAGTCTTAAATGAGAATCTTTAAGACGTT
* *
6800644 TTCAAAT-AAGAACCTTTGAGTCTTAAATGAGAATATTT-A-A-GTT
1 TTCAAATGAA-AATCTTTGAGTCTTAAATGAGAATCTTTAAGACGTT
* * *
6800687 TT-AAATGAGAATCTTTAAGATTTTTAAATGAGAATCTTTAAGA
1 TTCAAATGAAAATCTTT--GAGTCTTAAATGAGAATCTTTAAGA
6800730 AGAACTCAAA
Statistics
Matches: 416, Mismatches: 51, Indels: 44
0.81 0.10 0.09
Matches are distributed among these distances:
35 28 0.07
36 4 0.01
42 10 0.02
43 5 0.01
44 21 0.05
45 8 0.02
46 335 0.81
47 5 0.01
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.38
Consensus pattern (46 bp):
TTCAAATGAAAATCTTTGAGTCTTAAATGAGAATCTTTAAGACGTT
Found at i:6800355 original size:92 final size:92
Alignment explanation
Indices: 6800195--6800753 Score: 594
Period size: 92 Copynumber: 6.2 Consensus size: 92
6800185 ATCTTAAATC
* * * * * * *
6800195 TTCAAATGAAAATCTTTGAGTCTTAAATAAGAATCTTTAAGACTTTTTCAAATGAGAATCTTTCA
1 TTCAAATGAGAACCTTTGAGTCTTAAATGAGAATCTTTAAGACGTTTTCAAATGAAAAACTTTGA
* * * *
6800260 GTCTTAAATGAAAATTTTTAAAACGTT
66 GTCTTAAATGAGAATCTTTAAGACATT
* *
6800287 TTCAAGTGATAACCTTTGAGTCTTAAATGAGAATCTTTAAGACGTTTTCAAATGAAAAACTTTGA
1 TTCAAATGAGAACCTTTGAGTCTTAAATGAGAATCTTTAAGACGTTTTCAAATGAAAAACTTTGA
*
6800352 GTCTTAAATGAGAATCTTTAAGATATT
66 GTCTTAAATGAGAATCTTTAAGACATT
* * * *
6800379 TTCAAATGAGAACCATTGAATCTTAAATGAGAATCTTTAAGACGTTTTCAAATGAGAACCTTTGA
1 TTCAAATGAGAACCTTTGAGTCTTAAATGAGAATCTTTAAGACGTTTTCAAATGAAAAACTTTGA
*
6800444 GTTTTAAATGAGAATCTTTAAGACATT
66 GTCTTAAATGAGAATCTTTAAGACATT
* * *
6800471 TTCAAATGAGAATCTTTGAGTC-----------TCTTTAAGACATTTTCAAATGAAAAATTTTGA
1 TTCAAATGAGAACCTTTGAGTCTTAAATGAGAATCTTTAAGACGTTTTCAAATGAAAAACTTTGA
*
6800525 ATCTTAAATGAGAATCTTTAAGACATT
66 GTCTTAAATGAGAATCTTTAAGACATT
* * * * *
6800552 TTCAAATGAGAACATTTTAGTCTTAAATGAAAATCTTTAAAACGTTTTCAAAT-AAGAACCTTTG
1 TTCAAATGAGAACCTTTGAGTCTTAAATGAGAATCTTTAAGACGTTTTCAAATGAA-AAACTTTG
* * * *
6800616 AGTTTTAAATGAGAATTTTTAAAATATT
65 AGTCTTAAATGAGAATCTTTAAGACATT
* * * *
6800644 TTCAAATAAGAACCTTTGAGTCTTAAATGAGAATATTT-A-A-GTTTT-AAATGAGAATCTTTAA
1 TTCAAATGAGAACCTTTGAGTCTTAAATGAGAATCTTTAAGACGTTTTCAAATGAAAAACTTT--
* * **
6800705 GATTTTTAAATGAGAATCTTTAAGA-AGAA
64 GAGTCTTAAATGAGAATCTTTAAGACA-TT
*
6800734 CTCAAATGAGAACCTTTGAG
1 TTCAAATGAGAACCTTTGAG
6800754 ATTTTAGAAG
Statistics
Matches: 395, Mismatches: 56, Indels: 34
0.81 0.12 0.07
Matches are distributed among these distances:
81 72 0.18
88 10 0.03
89 7 0.02
90 41 0.10
91 3 0.01
92 262 0.66
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.37
Consensus pattern (92 bp):
TTCAAATGAGAACCTTTGAGTCTTAAATGAGAATCTTTAAGACGTTTTCAAATGAAAAACTTTGA
GTCTTAAATGAGAATCTTTAAGACATT
Found at i:6800385 original size:138 final size:138
Alignment explanation
Indices: 6800195--6800818 Score: 617
Period size: 138 Copynumber: 4.6 Consensus size: 138
6800185 ATCTTAAATC
* * *
6800195 TTCAAATGAAAATCTTTGAGTCTTAAATAAGAATCTTTAAGACT-TTTTCAAATGAGAATCTTTC
1 TTCAAATGAAAATCTTTGAGTCTTAAATGAGAATCTTTAAGA-TATTTTCAAATGAGAACCTTTG
* * * * *
6800259 AGTCTTAAATGAAAATTTTTAAAACGTTTTCAAGTGATAACCTTTGAGTCTTAAATGAGAATCTT
65 AATCTTAAATGAGAATCTTTAAAACGTTTTCAAATGAGAACCTTTGAGTCTTAAATGAGAATCTT
6800324 TAAGACGTT
130 TAAGACGTT
* *
6800333 TTCAAATGAAAAACTTTGAGTCTTAAATGAGAATCTTTAAGATATTTTCAAATGAGAACCATTGA
1 TTCAAATGAAAATCTTTGAGTCTTAAATGAGAATCTTTAAGATATTTTCAAATGAGAACCTTTGA
* *
6800398 ATCTTAAATGAGAATCTTTAAGACGTTTTCAAATGAGAACCTTTGAGTTTTAAATGAGAATCTTT
66 ATCTTAAATGAGAATCTTTAAAACGTTTTCAAATGAGAACCTTTGAGTCTTAAATGAGAATCTTT
*
6800463 AAGACATT
131 AAGACGTT
* * * **
6800471 TTCAAATGAGAATCTTTGAGTC-----------TCTTTAAGACATTTTCAAATGAAAAATTTTGA
1 TTCAAATGAAAATCTTTGAGTCTTAAATGAGAATCTTTAAGATATTTTCAAATGAGAACCTTTGA
* * * * *
6800525 ATCTTAAATGAGAATCTTTAAGACATTTTCAAATGAGAACATTTTAGTCTTAAATGAAAATCTTT
66 ATCTTAAATGAGAATCTTTAAAACGTTTTCAAATGAGAACCTTTGAGTCTTAAATGAGAATCTTT
*
6800590 AAAACGTT
131 AAGACGTT
* * * * *
6800598 TTCAAAT-AAGAACCTTTGAGTTTTAAATGAGAATTTTTAAAATATTTTCAAATAAGAACCTTTG
1 TTCAAATGAA-AATCTTTGAGTCTTAAATGAGAATCTTTAAGATATTTTCAAATGAGAACCTTTG
* * * * *
6800662 AGTCTTAAATGAGAATATTT--AA-GTTTT-AAATGAGAATCTTTAAGATTTTTAAATGAGAATC
65 AATCTTAAATGAGAATCTTTAAAACGTTTTCAAATGAGAACCTTT--GAGTCTTAAATGAGAATC
* **
6800723 TTTAAGAAGAA
128 TTTAAGACGTT
* * * * * *
6800734 CTCAAATGAGAACCTTTGAGATTTTAGAAGTGA-AA-CTTTAAGAT-TTATT-AAATGTGAGCCT
1 TTCAAATGAAAATCTTTGAG-TCTTA-AA-TGAGAATCTTTAAGATATT-TTCAAATGAGAACCT
* *
6800795 TTAAAT-TCAAATGAGAATCTTTAA
62 TTGAATCTTAAATGAGAATCTTTAA
6800819 CTATTGGATG
Statistics
Matches: 402, Mismatches: 62, Indels: 45
0.79 0.12 0.09
Matches are distributed among these distances:
126 1 0.00
127 110 0.27
134 12 0.03
135 18 0.04
136 53 0.13
137 16 0.04
138 189 0.47
139 3 0.01
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.37
Consensus pattern (138 bp):
TTCAAATGAAAATCTTTGAGTCTTAAATGAGAATCTTTAAGATATTTTCAAATGAGAACCTTTGA
ATCTTAAATGAGAATCTTTAAAACGTTTTCAAATGAGAACCTTTGAGTCTTAAATGAGAATCTTT
AAGACGTT
Found at i:6800510 original size:81 final size:80
Alignment explanation
Indices: 6800412--6800666 Score: 267
Period size: 81 Copynumber: 3.0 Consensus size: 80
6800402 TAAATGAGAA
6800412 TCTTTAAGACGTTTTCAAATGAGAACCTTTGAGTTTTAAATGAGAATCTTTAAGACATTTTCAAA
1 TCTTTAAGACGTTTTCAAATGAGAACCTTTGAGTTTTAAATGAGAATCTTTAAGACATTTTCAAA
6800477 TGAGAATCTTTGAGTC
66 TGAGAA-CTTTGAGTC
* * ** * *
6800493 TCTTTAAGACATTTTCAAATGAAAAATTTTGAATCTTAAATGAGAATCTTTAAGACATTTTCAAA
1 TCTTTAAGACGTTTTCAAATGAGAACCTTTGAGTTTTAAATGAGAATCTTTAAGACATTTTCAAA
*
6800558 TGAGAACATTTTAGTC
66 TGAGAAC-TTTGAGTC
* * * *
6800574 TTAAATGAAAATCTTTAAAACGTTTTCAAATAAGAACCTTTGAGTTTTAAATGAGAATTTTTAAA
1 -----------TCTTTAAGACGTTTTCAAATGAGAACCTTTGAGTTTTAAATGAGAATCTTTAAG
* *
6800639 ATATTTTCAAATAAGAACCTTTGAGTC
55 ACATTTTCAAATGAGAA-CTTTGAGTC
6800666 T
1 T
6800667 TAAATGAGAA
Statistics
Matches: 141, Mismatches: 20, Indels: 26
0.75 0.11 0.14
Matches are distributed among these distances:
80 1 0.01
81 73 0.52
92 66 0.47
93 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (80 bp):
TCTTTAAGACGTTTTCAAATGAGAACCTTTGAGTTTTAAATGAGAATCTTTAAGACATTTTCAAA
TGAGAACTTTGAGTC
Found at i:6800518 original size:173 final size:173
Alignment explanation
Indices: 6800320--6800666 Score: 552
Period size: 173 Copynumber: 2.0 Consensus size: 173
6800310 TAAATGAGAA
* * *
6800320 TCTTTAAGACGTTTTCAAATGAAAAACTTTGAGTCTTAAATGAGAATCTTTAAGATATTTTCAAA
1 TCTTTAAGACATTTTCAAATGAAAAACTTTGAATCTTAAATGAGAATCTTTAAGACATTTTCAAA
* * *
6800385 TGAGAACCA-TTGAATCTTAAATGAGAATCTTTAAGACGTTTTCAAATGAGAACCTTTGAGTTTT
66 TGAGAA-CATTTGAATCTTAAATGAAAATCTTTAAAACGTTTTCAAATAAGAACCTTTGAGTTTT
* * *
6800449 AAATGAGAATCTTTAAGACATTTTCAAATGAGAATCTTTGAGTC
130 AAATGAGAATCTTTAAAACATTTTCAAATAAGAACCTTTGAGTC
*
6800493 TCTTTAAGACATTTTCAAATGAAAAATTTTGAATCTTAAATGAGAATCTTTAAGACATTTTCAAA
1 TCTTTAAGACATTTTCAAATGAAAAACTTTGAATCTTAAATGAGAATCTTTAAGACATTTTCAAA
* *
6800558 TGAGAACATTTTAGTCTTAAATGAAAATCTTTAAAACGTTTTCAAATAAGAACCTTTGAGTTTTA
66 TGAGAACATTTGAATCTTAAATGAAAATCTTTAAAACGTTTTCAAATAAGAACCTTTGAGTTTTA
* *
6800623 AATGAGAATTTTTAAAATATTTTCAAATAAGAACCTTTGAGTC
131 AATGAGAATCTTTAAAACATTTTCAAATAAGAACCTTTGAGTC
6800666 T
1 T
6800667 TAAATGAGAA
Statistics
Matches: 159, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
172 2 0.01
173 157 0.99
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (173 bp):
TCTTTAAGACATTTTCAAATGAAAAACTTTGAATCTTAAATGAGAATCTTTAAGACATTTTCAAA
TGAGAACATTTGAATCTTAAATGAAAATCTTTAAAACGTTTTCAAATAAGAACCTTTGAGTTTTA
AATGAGAATCTTTAAAACATTTTCAAATAAGAACCTTTGAGTC
Found at i:6800630 original size:21 final size:21
Alignment explanation
Indices: 6800528--6800728 Score: 143
Period size: 21 Copynumber: 8.9 Consensus size: 21
6800518 ATTTTGAATC
6800528 TTAAATGAGAATCTTTAAGACATT
1 TTAAATGAGAATCTTTAAG---TT
* *
6800552 TTCAAATGAGAA-CATTTTAGTC
1 TT-AAATGAGAATC-TTTAAGTT
*
6800574 TTAAATGAAAATCTTTAAAACGTT
1 TTAAATGAGAATCTTT--AA-GTT
* * *
6800598 TTCAAATAAGAACCTTTGAGTT
1 TT-AAATGAGAATCTTTAAGTT
* *
6800620 TTAAATGAGAATTTTTAAAATATT
1 TTAAATGAGAATCTTT--AA-GTT
* * * *
6800644 TTCAAATAAGAACCTTTGAGTC
1 TT-AAATGAGAATCTTTAAGTT
*
6800666 TTAAATGAGAATATTTAAGTT
1 TTAAATGAGAATCTTTAAGTT
6800687 TTAAATGAGAATCTTTAAGATTT
1 TTAAATGAGAATCTTTAAG--TT
6800710 TTAAATGAGAATCTTTAAG
1 TTAAATGAGAATCTTTAAG
6800729 AAGAACTCAA
Statistics
Matches: 138, Mismatches: 26, Indels: 27
0.72 0.14 0.14
Matches are distributed among these distances:
21 54 0.39
22 12 0.09
23 25 0.18
24 11 0.08
25 36 0.26
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (21 bp):
TTAAATGAGAATCTTTAAGTT
Found at i:6800634 original size:127 final size:127
Alignment explanation
Indices: 6800366--6800634 Score: 353
Period size: 127 Copynumber: 2.1 Consensus size: 127
6800356 TAAATGAGAA
* * * * *
6800366 TCTTTAAGATATTTTCAAATGAGAACCATTGAATCTTAAATGAGAATCTTTAAGACGTTTTCAAA
1 TCTTAAAGAAATTTTCAAATGAAAAACATTGAATCTTAAATGAGAATCTTTAAGACATTTTCAAA
* * * * * *
6800431 TGAGAACCTTTGAGTTTTAAATGAGAATCTTTAAGACATTTTCAAATGAGAATCTTTGAGTC
66 TGAGAACATTTGAGTCTTAAATGAAAATCTTTAAAACATTTTCAAATAAGAACCTTTGAGTC
* * **
6800493 TCTTTAAGACATTTTCAAATGAAAAATTTTGAATCTTAAATGAGAATCTTTAAGACATTTTCAAA
1 TCTTAAAGAAATTTTCAAATGAAAAACATTGAATCTTAAATGAGAATCTTTAAGACATTTTCAAA
* *
6800558 TGAGAACATTTTAGTCTTAAATGAAAATCTTTAAAACGTTTTCAAATAAGAACCTTTGAGT-
66 TGAGAACATTTGAGTCTTAAATGAAAATCTTTAAAACATTTTCAAATAAGAACCTTTGAGTC
6800619 T-TTAAATGAGAATTTT
1 TCTTAAA-GA-AATTTT
6800635 TAAAATATTT
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
125 4 0.03
126 3 0.02
127 117 0.94
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (127 bp):
TCTTAAAGAAATTTTCAAATGAAAAACATTGAATCTTAAATGAGAATCTTTAAGACATTTTCAAA
TGAGAACATTTGAGTCTTAAATGAAAATCTTTAAAACATTTTCAAATAAGAACCTTTGAGTC
Found at i:6801114 original size:40 final size:40
Alignment explanation
Indices: 6801067--6801286 Score: 158
Period size: 40 Copynumber: 5.3 Consensus size: 40
6801057 TCGAAGAGCT
*
6801067 TTTATTTTTCAAAGTTATTGTACCTCTGTTTAGAAGAACA
1 TTTATTTTTCAAAGTTATTGTACCTCTGTTTAGAAGACCA
* * ** * * * *
6801107 TTGATTTTTTCAAAGTTATTATGTCTCTATTTAGATGAGCT
1 TTTA-TTTTTCAAAGTTATTGTACCTCTGTTTAGAAGACCA
* * *
6801148 TTTATTTTTCAAAGTTGTTGTGCCTTTGATTATAGAAG-CCTTA
1 TTTATTTTTCAAAGTTATTGTACCTCTG-TT-TAGAAGACC--A
* * * *
6801191 TTTATTTTTCAAAGTCATTG-AGCCTCTCTTTAGAGGACCC
1 TTTATTTTTCAAAGTTATTGTA-CCTCTGTTTAGAAGACCA
* * *
6801231 TTTATTTTTTAAAGTTGTTG-AGCTTCTGTTTAGAAGAGCCTTA
1 TTTATTTTTCAAAGTTATTGTA-CCTCTGTTTAGAAGA-CC--A
6801274 TTTATTTTTCAAA
1 TTTATTTTTCAAA
6801287 AATTGTTGAA
Statistics
Matches: 138, Mismatches: 32, Indels: 17
0.74 0.17 0.09
Matches are distributed among these distances:
40 53 0.38
41 42 0.30
42 9 0.07
43 34 0.25
ACGTcount: A:0.25, C:0.13, G:0.15, T:0.48
Consensus pattern (40 bp):
TTTATTTTTCAAAGTTATTGTACCTCTGTTTAGAAGACCA
Found at i:6801140 original size:41 final size:40
Alignment explanation
Indices: 6801070--6801163 Score: 107
Period size: 41 Copynumber: 2.3 Consensus size: 40
6801060 AAGAGCTTTT
* *
6801070 ATTTTTCAAAGTTATTGTACCTCTGTTTAGAAGAACATTG
1 ATTTTTCAAAGTTATTATACCTCTATTTAGAAGAACATTG
** * * * *
6801110 ATTTTTTCAAAGTTATTATGTCTCTATTTAGATGAGCTTTT
1 A-TTTTTCAAAGTTATTATACCTCTATTTAGAAGAACATTG
6801151 ATTTTTCAAAGTT
1 ATTTTTCAAAGTT
6801164 GTTGTGCCTT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
40 13 0.29
41 32 0.71
ACGTcount: A:0.28, C:0.11, G:0.13, T:0.49
Consensus pattern (40 bp):
ATTTTTCAAAGTTATTATACCTCTATTTAGAAGAACATTG
Found at i:6801202 original size:43 final size:43
Alignment explanation
Indices: 6801148--6801394 Score: 168
Period size: 43 Copynumber: 5.7 Consensus size: 43
6801138 TAGATGAGCT
* *
6801148 TTTATTTTTCAAAGTTGTTGTGCCTTTGATTATAGAAGCCTTA
1 TTTATTTTTCAAAGTCGTTGAGCCTTTGATTATAGAAGCCTTA
* * * * *
6801191 TTTATTTTTCAAAGTCATTGAGCCTCT-CTT-TAGAGGACC--C
1 TTTATTTTTCAAAGTCGTTGAGCCTTTGATTATAGAAG-CCTTA
* *
6801231 TTTATTTTTTAAAGTTGTTGAG-CTTCTG-TT-TAGAAGAGCCTTA
1 TTTATTTTTCAAAGTCGTTGAGCCTT-TGATTATAG-A-AGCCTTA
* * * * * *
6801274 TTTATTTTTCAAAAATTGTTGAACCTTTGATTAGA-AGAGCTTTG
1 TTTATTTTTC-AAAGTCGTTGAGCCTTTGATTATAGA-AGCCTTA
* * * * * *
6801318 TTTATTTTTTTTAAAGTCGTTGAGCTTTTGATTAGAGGAGCTTTG
1 TTTA--TTTTTCAAAGTCGTTGAGCCTTTGATTATAGAAGCCTTA
*
6801363 TTTATTTTTCAAAGTCATTGAGCCTTTGATTA
1 TTTATTTTTCAAAGTCGTTGAGCCTTTGATTA
6801395 AAAGAGTTTT
Statistics
Matches: 162, Mismatches: 28, Indels: 28
0.74 0.13 0.13
Matches are distributed among these distances:
39 2 0.01
40 25 0.15
41 8 0.05
42 5 0.03
43 57 0.35
44 23 0.14
45 36 0.22
46 6 0.04
ACGTcount: A:0.24, C:0.12, G:0.17, T:0.47
Consensus pattern (43 bp):
TTTATTTTTCAAAGTCGTTGAGCCTTTGATTATAGAAGCCTTA
Found at i:6801223 original size:83 final size:81
Alignment explanation
Indices: 6801059--6801411 Score: 243
Period size: 83 Copynumber: 4.2 Consensus size: 81
6801049 CGTGATTGTC
* * * *
6801059 GAAGAGCTTTTATTTTTCAAAGTTATTGTA-CCTCTGTTTAGAAGAAC--ATTGATTTTTTCAAA
1 GAAGAGCTTTTATTTTTCAAAGTTGTTG-AGCCTTTGTTTAGAAG-CCTTATTTA-TTTTTCAAA
* *
6801121 GTTATT-ATGTCTCTATTTA
63 GTCATTGA-GCCTCTATTTA
* *
6801140 GATGAGCTTTTATTTTTCAAAGTTGTTGTGCCTTTGATTATAGAAGCCTTATTTATTTTTCAAAG
1 GAAGAGCTTTTATTTTTCAAAGTTGTTGAGCCTTTG-TT-TAGAAGCCTTATTTATTTTTCAAAG
*
6801205 TCATTGAGCCTCTCTTTA
64 TCATTGAGCCTCTATTTA
* * * *
6801223 GAGGACCCTTTATTTTTTAAAGTTGTTGAG-CTTCTGTTTAGAAGAGCCTTATTTATTTTTCAAA
1 GAAGAGCTTTTATTTTTCAAAGTTGTTGAGCCTT-TGTTTAG-A-AGCCTTATTTATTTTTC-AA
* ** * *
6801287 AATTGTTGAACCTTTGA-TTA
62 AGTCATTGAGCCTCT-ATTTA
* * * * * *
6801307 GAAGAGCTTTGTTTATTTTTTTTAAAGTCGTTGAGCTTTTGATTAGAGGAGCTTTGTTTATTTTT
1 GAAGAGC--T-TTTA--TTTTTCAAAGTTGTTGAGCCTTTGTTTAGA--AGCCTTATTTATTTTT
*
6801372 CAAAGTCATTGAGCCTTTGA-TTA
59 CAAAGTCATTGAGCCTCT-ATTTA
* *
6801395 AAAGAGTTTTTATTTTT
1 GAAGAGCTTTTATTTTT
6801412 TATTTTTAAA
Statistics
Matches: 220, Mismatches: 34, Indels: 34
0.76 0.12 0.12
Matches are distributed among these distances:
81 34 0.15
82 9 0.04
83 78 0.35
84 25 0.11
85 4 0.02
86 1 0.00
87 4 0.02
88 24 0.11
89 39 0.18
90 2 0.01
ACGTcount: A:0.25, C:0.11, G:0.16, T:0.47
Consensus pattern (81 bp):
GAAGAGCTTTTATTTTTCAAAGTTGTTGAGCCTTTGTTTAGAAGCCTTATTTATTTTTCAAAGTC
ATTGAGCCTCTATTTA
Found at i:6801344 original size:89 final size:88
Alignment explanation
Indices: 6801235--6801472 Score: 244
Period size: 89 Copynumber: 2.7 Consensus size: 88
6801225 GGACCCTTTA
* * **
6801235 TTTTTTAAAGTTGTTGAGCTTCTGTTTAGAAGAGCCTTATTTATTTTTCAAAAATTGTTGAACCT
1 TTTTTTAAAGTCGTTGAGCTTCTGATTAGAAGAGCCTTATTTATTTTTC-AAAATCATTGAACCT
*
6801300 TTGATTAGAAGAGCTTTGT-TTATT
65 TTGATTAAAAGAG-TTTGTATTATT
* * * * * *
6801324 TTTTTTAAAGTCGTTGAGCTTTTGATTAGAGGAGCTTTGTTTATTTTTCAAAGTCATTGAGCCTT
1 TTTTTTAAAGTCGTTGAGCTTCTGATTAGAAGAGCCTTATTTATTTTTCAAAATCATTGAACCTT
* *
6801389 TGATTAAAAGAGTTTTTATTTTT
66 TGATTAAAAGAGTTTGTATTATT
* * * * * * ** *
6801412 TATTTTTAAAGTCGTTAAGCCTCTGCTCAAAAGAGCCCTATTTATTTACCAAAGTCATTGA
1 T-TTTTTAAAGTCGTTGAGCTTCTGATTAGAAGAGCCTTATTTATTTTTCAAAATCATTGA
6801473 GCTTCTGCTT
Statistics
Matches: 122, Mismatches: 25, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
87 4 0.03
88 28 0.23
89 90 0.74
ACGTcount: A:0.26, C:0.11, G:0.16, T:0.46
Consensus pattern (88 bp):
TTTTTTAAAGTCGTTGAGCTTCTGATTAGAAGAGCCTTATTTATTTTTCAAAATCATTGAACCTT
TGATTAAAAGAGTTTGTATTATT
Found at i:6801348 original size:45 final size:44
Alignment explanation
Indices: 6801231--6801433 Score: 187
Period size: 45 Copynumber: 4.6 Consensus size: 44
6801221 TAGAGGACCC
* * * *
6801231 TTTA-TTTTTTAAAGTTGTTGAG-CTTCTGTTTAGAAGAGCCTTA
1 TTTATTTTTTTAAAGTCGTTGAGCCTT-TGATTAGAAGAGCTTTG
** * * *
6801274 TTTATTTTTCAAAAATTGTTGAACCTTTGATTAGAAGAGCTTTG
1 TTTATTTTTTTAAAGTCGTTGAGCCTTTGATTAGAAGAGCTTTG
* *
6801318 TTTATTTTTTTTAAAGTCGTTGAGCTTTTGATTAGAGGAGCTTTG
1 TTTA-TTTTTTTAAAGTCGTTGAGCCTTTGATTAGAAGAGCTTTG
* * * * *
6801363 TTTA-TTTTTCAAAGTCATTGAGCCTTTGATTAAAAGAGTTTTTA
1 TTTATTTTTTTAAAGTCGTTGAGCCTTTGATTAGAAGAG-CTTTG
* *
6801407 TTTTTTATTTTTAAAGTCGTTAAGCCT
1 TTTATT-TTTTTAAAGTCGTTGAGCCT
6801434 CTGCTCAAAA
Statistics
Matches: 129, Mismatches: 25, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
43 33 0.26
44 38 0.29
45 41 0.32
46 17 0.13
ACGTcount: A:0.25, C:0.09, G:0.17, T:0.49
Consensus pattern (44 bp):
TTTATTTTTTTAAAGTCGTTGAGCCTTTGATTAGAAGAGCTTTG
Found at i:6801509 original size:43 final size:42
Alignment explanation
Indices: 6801147--6801517 Score: 152
Period size: 43 Copynumber: 8.5 Consensus size: 42
6801137 TTAGATGAGC
* * *
6801147 TTTTATTTTTCAAAGTTGTTGTGCCTT-TGATTA-TAGAAGCCT-
1 TTTTATTTTT-AAAGTCGTTGAG-CTTCTGATTAGAAG-AGCCTA
* * ** * *
6801189 TATTTATTTTTCAAAGTCATTGAGCCTCTCTTTAGAGGACCCT-
1 T-TTTATTTTT-AAAGTCGTTGAGCTTCTGATTAGAAGAGCCTA
* * *
6801232 TTAT-TTTTTAAAGTTGTTGAGCTTCTGTTTAGAAGAGCCT-
1 TTTTATTTTTAAAGTCGTTGAGCTTCTGATTAGAAGAGCCTA
* * * *
6801272 TATTTATTTTTCAAAAATTGTTGAACCTT-TGATTAGAAGAG-CTT
1 T-TTTATTTTT--AAAGTCGTTG-AGCTTCTGATTAGAAGAGCCTA
* * *
6801316 TGTTTATTTTTTTTAAAGTCGTTGAGCTTTTGATTAGAGGAG-CTT
1 T-TTTA---TTTTTAAAGTCGTTGAGCTTCTGATTAGAAGAGCCTA
* * **
6801361 TGTTTATTTTTCAAAGTCATTGAGCCTT-TGATTAAAAGAGTTTTTA
1 T-TTTATTTTT-AAAGTCGTTGAG-CTTCTGATTAGAAGAG--CCTA
* * * * *
6801407 TTTTTTATTTTTAAAGTCGTTAAGCCTCTGCTCAAAAGAGCCCTA
1 --TTTTATTTTTAAAGTCGTTGAGCTTCTGATTAGAAGAG-CCTA
** * * *
6801452 -TTTATTTACCAAAGTCATTGAGCTTCTGCTTAGAGGAGCCTAA
1 TTTTATTT-TTAAAGTCGTTGAGCTTCTGATTAGAAGAGCCT-A
*
6801495 TTTTATTTTTAAAGTTGTTGAGC
1 TTTTATTTTTAAAGTCGTTGAGC
6801518 CCCTGTTTAG
Statistics
Matches: 255, Mismatches: 50, Indels: 47
0.72 0.14 0.13
Matches are distributed among these distances:
40 26 0.10
41 7 0.03
42 25 0.10
43 85 0.33
44 40 0.16
45 36 0.14
46 21 0.08
47 14 0.05
48 1 0.00
ACGTcount: A:0.25, C:0.13, G:0.17, T:0.46
Consensus pattern (42 bp):
TTTTATTTTTAAAGTCGTTGAGCTTCTGATTAGAAGAGCCTA
Found at i:6805318 original size:17 final size:17
Alignment explanation
Indices: 6805296--6805330 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
6805286 AAGGTTTGTT
*
6805296 TCCATTTATAGTTGATG
1 TCCATTTATAATTGATG
6805313 TCCATTTATAATTGATG
1 TCCATTTATAATTGATG
6805330 T
1 T
6805331 AACAATAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.11, G:0.14, T:0.49
Consensus pattern (17 bp):
TCCATTTATAATTGATG
Found at i:6814067 original size:21 final size:20
Alignment explanation
Indices: 6814035--6814078 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
6814025 CTAATACATG
*
6814035 ATTGACCCTAGTTATGAGTC
1 ATTGACCCTAGTTATGACTC
*
6814055 ATTGTACCTTAGTTATGACTC
1 ATTG-ACCCTAGTTATGACTC
6814076 ATT
1 ATT
6814079 ATCCTTTAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.25, C:0.18, G:0.16, T:0.41
Consensus pattern (20 bp):
ATTGACCCTAGTTATGACTC
Found at i:6814088 original size:21 final size:21
Alignment explanation
Indices: 6814043--6814084 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
6814033 TGATTGACCC
* *
6814043 TAGTTATGAGTCATTGTACCT
1 TAGTTATGACTCATTATACCT
6814064 TAGTTATGACTCATTAT-CCT
1 TAGTTATGACTCATTATACCT
6814084 T
1 T
6814085 TAGTCTTATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.24, C:0.17, G:0.14, T:0.45
Consensus pattern (21 bp):
TAGTTATGACTCATTATACCT
Found at i:6823714 original size:17 final size:17
Alignment explanation
Indices: 6823692--6823725 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
6823682 AAATCTTTTA
6823692 AGATTTGAGTGAATATT
1 AGATTTGAGTGAATATT
6823709 AGATTTGAGTGAATATT
1 AGATTTGAGTGAATATT
6823726 CTCAACAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.24, T:0.41
Consensus pattern (17 bp):
AGATTTGAGTGAATATT
Found at i:6830786 original size:356 final size:355
Alignment explanation
Indices: 6830162--6831221 Score: 1518
Period size: 356 Copynumber: 3.0 Consensus size: 355
6830152 TCTATAACTA
* * * *
6830162 CCTTCACTAATTATCTACAAACTATGATA-AGAGTTATTAAAGGTATTTTTCTTAGATATACGCC
1 CCTTCACTAATTATCTACAAACTGTGATAGA-AATTATTAAAGGTGTATTTCTTAGATATACGCC
* * *
6830226 TTCAATAACCGCGTTAAAATTTATGT-AGCGGTATATAAAAGGCATTTTACAATAGAAAACGCCT
65 TTCAATAACCGCGTTAAAATTTATGTGA-CGATATATAAAAGGCATTTTACAGTAGAAGACGCCT
* *
6830290 TTAATAATTCTCAAAATTTTTAGTGAAAAAATTTTGAAGGCGTTTATTATTAACAAACGCCTTCA
129 TTAATAATTCTCAAAATTTTTAGTGAAAAAATTTTGAAGGCGTCTGTTATTAACAAACG-CTTCA
* **
6830355 GTAATGGATTACTAAGTTTAAAGATATATTGAAGGCATTTTTTTGAATAAACACCTTCCATAACC
193 GTAATGGATTACTAAGTTTAAAGATATATTGAAGGCATTTTTTCGAATAAATGCCTTCCATAACC
* *
6830420 ATCATGGTATATTGAAGGCATTTCATAATAAAAGACACCTTTAATAATCTGAAAATTTTTTTTAA
258 ATCGTGGTATATTGAAGGCATTTCATAATAAAAGATACCTTTAATAATCTGAAAATTTTTTTTAA
6830485 GAAAATTATTGAAGGCGTTGTTATCTACAATCG
323 GAAAATTATTGAAGGCGTTGTTATCTACAATCG
* * *
6830518 CCTTCACTAATTACCTACAAACTGTGATAGAAATTATTAAAGGCGTATTTCTTGGATATACGCCT
1 CCTTCACTAATTATCTACAAACTGTGATAGAAATTATTAAAGGTGTATTTCTTAGATATACGCCT
* * *
6830583 TCAATAACCACGTTAAAATTTGTGTGACGATATATAGAAGGCATTTTACAGTAGAAGACGCCTTT
66 TCAATAACCGCGTTAAAATTTATGTGACGATATATAAAAGGCATTTTACAGTAGAAGACGCCTTT
* *
6830648 AATAATTTTAAAAATTTTTAGTGAAAAAATTTTGAAGGCGTCTGTTATTAACAAACGCATTCAGT
131 AATAATTCTCAAAATTTTTAGTGAAAAAATTTTGAAGGCGTCTGTTATTAACAAACGC-TTCAGT
*
6830713 AATGGATTACTAAGTTTAAAGATATATTGAAGGCATTTTTTCGAATAAATGCCTTCCATAAACAT
195 AATGGATTACTAAGTTTAAAGATATATTGAAGGCATTTTTTCGAATAAATGCCTTCCATAACCAT
* ****
6830778 CGTGGTATATTGAAGGCATTTCATAATAAAAGATGCCTTTAATAATCTGAAAAAAAAAATTTTAA
260 CGTGGTATATTGAAGGCATTTCATAATAAAAGATACCTTTAATAATCTG--AAAATTTTTTTTAA
*
6830843 -AAAATTATTGAAGGCGTTGTTATCTACAATCT
323 GAAAATTATTGAAGGCGTTGTTATCTACAATCG
* * *
6830875 CATTCACTAATTATCTACAAACTGTGATAG-AATTATTAAAAGTGTCTTTCTTAGATATACGCCT
1 CCTTCACTAATTATCTACAAACTGTGATAGAAATTATTAAAGGTGTATTTCTTAGATATACGCCT
* * * * * * *
6830939 TTAATAACCGTGTTAAAATTTATGTGGC-AGTATATATAAGGTATTTTATAGTAAAAGACGCCTT
66 TCAATAACCGCGTTAAAATTTATGTGACGA-TATATAAAAGGCATTTTACAGTAGAAGACGCCTT
* * * * * *
6831003 TAATGATTCCCAAAATGTTTAGTGAGAAAATTTTAAAGGCATCTGTTATTAACAAACGTCTTCAG
130 TAATAATTCTCAAAATTTTTAGTGAAAAAATTTTGAAGGCGTCTGTTATTAACAAACG-CTTCAG
* * * *
6831068 TAATGGATTACTAAGTTTAAAGGTATATTGGAGGCACTTTTTCGAATAAATGCTTTCCATAACCA
194 TAATGGATTACTAAGTTTAAAGATATATTGAAGGCATTTTTTCGAATAAATGCCTTCCATAACCA
* ** *
6831133 TTGTGGTATATTGAAGGTGTTTCATAATAAAAGATACCTTTAATAATCCGAAAATTTTTTTTTAA
259 TCGTGGTATATTGAAGGCATTTCATAATAAAAGATACCTTTAATAATCTGAAAA-TTTTTTTTAA
*
6831198 GAAAATTATTGAAGGCATTGTTAT
323 GAAAATTATTGAAGGCGTTGTTAT
6831222 TAACAAATGC
Statistics
Matches: 628, Mismatches: 67, Indels: 18
0.88 0.09 0.03
Matches are distributed among these distances:
354 4 0.01
355 8 0.01
356 544 0.87
357 62 0.10
358 10 0.02
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (355 bp):
CCTTCACTAATTATCTACAAACTGTGATAGAAATTATTAAAGGTGTATTTCTTAGATATACGCCT
TCAATAACCGCGTTAAAATTTATGTGACGATATATAAAAGGCATTTTACAGTAGAAGACGCCTTT
AATAATTCTCAAAATTTTTAGTGAAAAAATTTTGAAGGCGTCTGTTATTAACAAACGCTTCAGTA
ATGGATTACTAAGTTTAAAGATATATTGAAGGCATTTTTTCGAATAAATGCCTTCCATAACCATC
GTGGTATATTGAAGGCATTTCATAATAAAAGATACCTTTAATAATCTGAAAATTTTTTTTAAGAA
AATTATTGAAGGCGTTGTTATCTACAATCG
Found at i:6831287 original size:170 final size:168
Alignment explanation
Indices: 6830968--6832457 Score: 848
Period size: 170 Copynumber: 8.5 Consensus size: 168
6830958 TTATGTGGCA
* * * * * ** *
6830968 GTATATAT-AAGGTATTTTATAGTAAAAGACGCCTTTAATGATTCCCAAAATGTTTAGTGAGAAA
1 GTATAT-TGAAGGCATTTTATAATAAAAGACGCCTTTAAT-AATCCAAAAATTTTTTTTAAGAAA
* * * *
6831032 ATT-TTAAAGGCATCTGTTATTAACAAACGTCTTCAGTAATGGATTACTAAGTTTAAAGGTATAT
64 ATTATTGAAGGCGT-TGTTATTAACAAACGCCTTCAGTAATGGATTACTAAGTTTAAAGATATAT
** * * * * *
6831096 TGGAGGCACTTTTTCGAATAAATGCTTTCCATAACCATTGTG
128 TAAAGG-TCTTTTTTGAATAAACGCCTTCCATAACCATCGTG
** * ** *
6831138 GTATATTGAAGGTGTTTCATAATAAAAGATACCTTTAATAATCCGAAAATTTTTTTTTAAGAAAA
1 GTATATTGAAGGCATTTTATAATAAAAGACGCCTTTAATAATCC-AAAAATTTTTTTTAAGAAAA
* *
6831203 TTATTGAAGGCATTGTTATTAACAAATGCCTTCAGTAATGGATTACTAAGTTTAAAGATATATTA
65 TTATTGAAGGCGTTGTTATTAACAAACGCCTTCAGTAATGGATTACTAAGTTTAAAGATATATTA
6831268 AAGGTGCTTTTTTGAATAAACGCCTTCCATAACCATCGTG
130 AAGGT-CTTTTTTGAATAAACGCCTTCCATAACCATCGTG
* * **** *
6831308 GTATATTGAAGGCGTTTTATAATAAAAGACGCCTTTAATAATCTAAAAAAAAACTTTTAAAAAAA
1 GTATATTGAAGGCATTTTATAATAAAAGACGCCTTTAATAATC-CAAAAATTTTTTTTAAGAAAA
* * * * * * * * * * * * *
6831373 TTATTAAATGTGTTGTTATCT-GCAACCGCATTCACTAAT-TATCTACAAACTGTGATAGAAATT
65 TTATTGAAGGCGTTGTTAT-TAACAAACGCCTTCAGTAATGGAT-TACTAAGT-TTAAAGATA-T
* ** * *
6831436 ATTAAAAGCGTCTTTCTTGAATGTACGCCTTCAATAACCATGTTAAAATTTATGTGGCG
126 ATT-AAAG-GTCTTTTTTGAATAAACGCCTTCCATAACC--------A--T-CGT---G
** * * * * * * * * ** *
6831495 GTATATAAAAGGCATTTTACAGTAGATGATGCCTTTAATGATTCCCAAAATGTTTAGTGAGAAAA
1 GTATATTGAAGGCATTTTATAATAAAAGACGCCTTTAAT-AATCCAAAAATTTTTTTTAAGAAAA
* * *
6831560 TT-TTGAAGGCGTCTATTATTAACAAACGCCTTCAGTAATTGATTACTAAGTTTAAAGGTATATT
65 TTATTGAAGGCGT-TGTTATTAACAAACGCCTTCAGTAATGGATTACTAAGTTTAAAGATATATT
* *
6831624 GAA-GTATTTTTTTCGAATAAACGCCTTCCATAACCATCGTG
129 AAAGGT-CTTTTTT-GAATAAACGCCTTCCATAACCATCGTG
* * *
6831665 GTATATTGAAGGCATTTCATAATAAAAGACGCCTTTAATAATTCAAAAAATTTTTTTAAGAAAAT
1 GTATATTGAAGGCATTTTATAATAAAAGACGCCTTTAATAATCCAAAAATTTTTTTTAAGAAAAT
* * * * * * * *
6831730 TATTGAAGGCATTGTTATCT-ACAACCGCCTTCACTAAT-TATCTACAAACTATGATAGA-ATTA
66 TATTGAAGGCGTTGTTAT-TAACAAACGCCTTCAGTAATGGAT-TACTAAGT-TTAAAGATA-TA
* * * * *
6831792 TTAAAGGCATCTTTCTTGGATATACGCCTTCAATAACCGTGTTAAAATTTGTGTGGCG
127 TTAAAGG--TCTTTTTTGAATAAACGCCTTCCATAACC--------A--T-CGT---G
** * * * * * * ** *
6831850 GTATATAAAAGGTATTTTACAGTAGAAGATGCCTTTAATAATTTCAAAAATTTTTGGTGAGAAAA
1 GTATATTGAAGGCATTTTATAATAAAAGACGCCTTTAATAA-TCCAAAAATTTTTTTTAAGAAAA
* *
6831915 TT-TTGAAGGCGTCTGTTATTAACAAACACCTTCAGTAATGGATTACTAAGTTTAAAGGTATATT
65 TTATTGAAGGCGT-TGTTATTAACAAACGCCTTCAGTAATGGATTACTAAGTTTAAAGATATATT
* *
6831979 GAAGG-CGTTTTTTTGAATAAACACCTTCCATAACCATCGTG
129 AAAGGTC--TTTTTTGAATAAACGCCTTCCATAACCATCGTG
* *
6832020 GTATATTGAAGGCGTTTTATAATAAAAGACGCCTTTAATAATCCGAAAAATTTTTTTTAAG-GAA
1 GTATATTGAAGGCATTTTATAATAAAAGACGCCTTTAATAATCC-AAAAATTTTTTTTAAGAAAA
* ** * *
6832084 TTATTAAAGGCGTTGTTATCT--GTAACTGCCTTC-GCTAAT-AATCTAC-AAATTGTGATAAGA
65 TTATTGAAGGCGTTGTTAT-TAACAAAC-GCCTTCAG-TAATGGAT-TACTAAGTT-T-A-AAGA
* * * * *
6832144 -ATTATTAAAGGCATCTTTCTT-AGATATACGTCTTCAATAACCGTGTTAAAATTTATGTGGCG
123 TA-TATTAAAGG--TCTTTTTTGA-ATAAACGCCTTCCATAACC--------A--T-CGT---G
* * * * * ** **
6832206 GTATATAGAAGGCATTTTATAGTAGAAGACACTTTTAATAATTCTC-AAAATTTTTAGTGGGAAA
1 GTATATTGAAGGCATTTTATAATAAAAGACGCCTTTAATAA-TC-CAAAAATTTTTTTTAAGAAA
* * *
6832270 ATT-TTGAAGGCGTCTGTTATTAACAAACACTTTCAGTAATAGATTACTAAGTTTAAACG-TATA
64 ATTATTGAAGGCGT-TGTTATTAACAAACGCCTTCAGTAATGGATTACTAAGTTTAAA-GATATA
* * * * *
6832333 TTGAAGGCACTTTTTTGAATAAACGTCTTTCATAACCATCATG
127 TTAAAGG-TCTTTTTTGAATAAACGCCTTCCATAACCATCGTG
* *
6832376 GTATATTGAAGGCATTTCATAATAAAAGATGCCTTTAATAATCCAAAAA-TTTTTTTAAGAAAAT
1 GTATATTGAAGGCATTTTATAATAAAAGACGCCTTTAATAATCCAAAAATTTTTTTTAAGAAAAT
*
6832440 TATTGAAGGTGTTGTTAT
66 TATTGAAGGCGTTGTTAT
6832458 CTGCAACCGC
Statistics
Matches: 995, Mismatches: 223, Indels: 206
0.70 0.16 0.14
Matches are distributed among these distances:
168 31 0.03
169 94 0.09
170 362 0.36
171 47 0.05
172 29 0.03
173 34 0.03
174 6 0.01
176 3 0.00
179 1 0.00
180 1 0.00
181 2 0.00
182 6 0.01
183 8 0.01
184 66 0.07
185 71 0.07
186 122 0.12
187 96 0.10
188 16 0.02
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (168 bp):
GTATATTGAAGGCATTTTATAATAAAAGACGCCTTTAATAATCCAAAAATTTTTTTTAAGAAAAT
TATTGAAGGCGTTGTTATTAACAAACGCCTTCAGTAATGGATTACTAAGTTTAAAGATATATTAA
AGGTCTTTTTTGAATAAACGCCTTCCATAACCATCGTG
Found at i:6831344 original size:526 final size:526
Alignment explanation
Indices: 6830613--6831747 Score: 1638
Period size: 527 Copynumber: 2.2 Consensus size: 526
6830603 TGTGTGACGA
* * * * * * *** *
6830613 TATATAGAAGGCATTTTACAGTAGAAGACGCCTTTAATAATTTTAAAAATTTTTAGTGAA-AAAA
1 TATATTGAAGGCATTTCATAATAAAAGACACCTTTAATAATCCAAAAAATTTTT--TTAAGAAAA
*
6830677 TT-TTGAAGGCGTCTGTTATTAACAAACGCATTCAGTAATGGATTACTAAGTTTAAAGATATATT
64 TTATTGAAGGCAT-TGTTATTAACAAACGCATTCAGTAATGGATTACTAAGTTTAAAGATATATT
* *
6830741 GAAGGCATTTTTTCGAATAAATGCCTTCCATAAACATCGTGGTATATTGAAGGCATTTCATAATA
128 AAAGGCATTTTTTCGAATAAACGCCTTCCATAAACATCGTGGTATATTGAAGGCATTTCATAATA
* *
6830806 AAAGATGCCTTTAATAATCTGAAAAAAAAAATTTT-AAAAAATTATTGAAGGCGTTGTTATCTAC
193 AAAGACGCCTTTAATAATCT-AAAAAAAAAATTTTAAAAAAATTATTAAAGGCGTTGTTATCTAC
* * *
6830870 AATCTCATTCACTAATTATCTACAAACTGTGATAG-AATTATTAAAAGTGTCTTTCTT-AGATAT
257 AACCGCATTCACTAATTATCTACAAACTGTGATAGAAATTATTAAAAGCGTCTTTCTTGA-ATAT
* * * * *
6830933 ACGCCTTTAATAACCGTGTTAAAATTTATGTGGCAGTATATATAAGGTATTTTATAGTAAAAGAC
321 ACGCCTTCAATAACCATGTTAAAATTTATGTGGCAGTATATAAAAGGCATTTTACAGTAAAAGAC
* *
6830998 GCCTTTAATGATTCCCAAAATGTTTAGTGAGAAAATTTTAAAGGCATCTGTTATTAACAAACGTC
386 GCCTTTAATGATTCCCAAAATGTTTAGTGAGAAAATTTTAAAGGCATCTATTATTAACAAACGCC
* * *
6831063 TTCAGTAATGGATTACTAAGTTTAAAGGTATATTGGAGGCA-CTTTTTCGAATAAATGCTTTCCA
451 TTCAGTAATGGATTACTAAGTTTAAAGGTATATT-GAAGCATCTTTTTCGAATAAACGCCTTCCA
*
6831127 TAACCATTGTGG
515 TAACCATCGTGG
** * **
6831139 TATATTGAAGGTGTTTCATAATAAAAGATACCTTTAATAATCCGAAAATTTTTTTTTAAGAAAAT
1 TATATTGAAGGCATTTCATAATAAAAGACACCTTTAATAATCC-AAAAAATTTTTTTAAGAAAAT
* *
6831204 TATTGAAGGCATTGTTATTAACAAATGCCTTCAGTAATGGATTACTAAGTTTAAAGATATATTAA
65 TATTGAAGGCATTGTTATTAACAAACGCATTCAGTAATGGATTACTAAGTTTAAAGATATATTAA
* * *
6831269 AGGTGC-TTTTTT-GAATAAACGCCTTCCATAACCATCGTGGTATATTGAAGGCGTTTTATAATA
130 A-G-GCATTTTTTCGAATAAACGCCTTCCATAAACATCGTGGTATATTGAAGGCATTTCATAATA
* * * *
6831332 AAAGACGCCTTTAATAATCTAAAAAAAAACTTTTAAAAAAATTATTAAATGTGTTGTTATCTGCA
193 AAAGACGCCTTTAATAATCTAAAAAAAAAATTTTAAAAAAATTATTAAAGGCGTTGTTATCTACA
*
6831397 ACCGCATTCACTAATTATCTACAAACTGTGATAGAAATTATTAAAAGCGTCTTTCTTGAATGTAC
258 ACCGCATTCACTAATTATCTACAAACTGTGATAGAAATTATTAAAAGCGTCTTTCTTGAATATAC
* * * *
6831462 GCCTTCAATAACCATGTTAAAATTTATGTGGCGGTATATAAAAGGCATTTTACAGTAGATGATGC
323 GCCTTCAATAACCATGTTAAAATTTATGTGGCAGTATATAAAAGGCATTTTACAGTAAAAGACGC
* *
6831527 CTTTAATGATTCCCAAAATGTTTAGTGAGAAAATTTTGAAGGCGTCTATTATTAACAAACGCCTT
388 CTTTAATGATTCCCAAAATGTTTAGTGAGAAAATTTTAAAGGCATCTATTATTAACAAACGCCTT
* * *
6831592 CAGTAATTGATTACTAAGTTTAAAGGTATATTGAAGTATTTTTTTCGAATAAACGCCTTCCATAA
453 CAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGCATCTTTTTCGAATAAACGCCTTCCATAA
6831657 CCATCGTGG
518 CCATCGTGG
* *
6831666 TATATTGAAGGCATTTCATAATAAAAGACGCCTTTAATAATTCAAAAAATTTTTTTAAGAAAATT
1 TATATTGAAGGCATTTCATAATAAAAGACACCTTTAATAATCCAAAAAATTTTTTTAAGAAAATT
6831731 ATTGAAGGCATTGTTAT
66 ATTGAAGGCATTGTTAT
6831748 CTACAACCGC
Statistics
Matches: 540, Mismatches: 60, Indels: 18
0.87 0.10 0.03
Matches are distributed among these distances:
525 16 0.03
526 254 0.47
527 267 0.49
528 3 0.01
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (526 bp):
TATATTGAAGGCATTTCATAATAAAAGACACCTTTAATAATCCAAAAAATTTTTTTAAGAAAATT
ATTGAAGGCATTGTTATTAACAAACGCATTCAGTAATGGATTACTAAGTTTAAAGATATATTAAA
GGCATTTTTTCGAATAAACGCCTTCCATAAACATCGTGGTATATTGAAGGCATTTCATAATAAAA
GACGCCTTTAATAATCTAAAAAAAAAATTTTAAAAAAATTATTAAAGGCGTTGTTATCTACAACC
GCATTCACTAATTATCTACAAACTGTGATAGAAATTATTAAAAGCGTCTTTCTTGAATATACGCC
TTCAATAACCATGTTAAAATTTATGTGGCAGTATATAAAAGGCATTTTACAGTAAAAGACGCCTT
TAATGATTCCCAAAATGTTTAGTGAGAAAATTTTAAAGGCATCTATTATTAACAAACGCCTTCAG
TAATGGATTACTAAGTTTAAAGGTATATTGAAGCATCTTTTTCGAATAAACGCCTTCCATAACCA
TCGTGG
Found at i:6831568 original size:712 final size:700
Alignment explanation
Indices: 6830147--6832289 Score: 1739
Period size: 712 Copynumber: 3.0 Consensus size: 700
6830137 TTAAAGATAT
* *
6830147 TGTTATCTATAACTACCTTCACTAATTATCTACAAACTATGATAAGAGTTATTAAAGGTATTTTT
1 TGTTATCTACAACT-CCTTCACTAATTATCTACAAACT-TGAT-AGAGTTATTAAAAGTA-TTTT
* *
6830212 CTTAGATATACGCCTTCAATAACCGCGTTAAAATTTATGTAGCGGTATATAAAAGGCATTTTACA
62 CTTAGATATACGCCTTCAATAACCG-GTTAAAATTTATGT-GC-GTATATATAAGGCATTTTATA
* * * *
6830277 ATAGAAA-ACGCCTTTAATAATTCTCAAAATTTTTAGTGAAAAAATTTTGAAGGCGTTTATTATT
124 ATA-AAAGACGCCTTTAATAATTCACAAAA-TTTTAGTGAGAAAATTTTGAAGGC-ATTGTTATT
* *
6830341 AACAAACGCCTTCAGTAATGGATTACTAAGTTTAAAGATATATTGAAGGCATTTTTTTGAATAAA
186 AACAAACGCCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGCA-CTTTTTGAATAAA
* ** * * *
6830406 CACCTTCCATAACCATCATGGTATATTGAAGGCATTTCATAATAAAAGACACCTTTAATAATCTG
250 CGCCTTCCATAACCATTGTGGTATATTGAAGGTATTTCATAATAAAAGATACCTTTAATAATCCG
* * *
6830471 AAAATTTTTTTTAAGAAAATTATTGAAGGCGTTGTTATCT-AC-AATCGCCTTCACTAAT-TACC
315 AAAATTTTTTTTAAGAAAATTATTGAAGGCGTTGTTAT-TAACAAAT-GCCTTCAGTAATGGA-T
* * * * * * * *
6830533 TACAAACTGTGATAGAAATTATTAAAGGCGTATTTCTTGGATATACGCCTTCAATAACCA-CGTT
377 TACTAAGT-TTAAAGATA-TATTAAAGGCGT-TTT-TTGAATAAACGCCTTCCATAACCATCG--
* * * * **
6830597 AAAATTTGTGTGACGATATATAGAAGGCATTTTACAGTAGAAGACGCCTTTAATAAT-TTTAAAA
436 ------TG-GT----ATAT-T-GAAGGCGTTTTATAATAAAAGACGCCTTTAATAATCTAAAAAA
* * * * *
6830661 ATTTTTAGTGAAAAAATT-TTGAAGGCGTCTGTTAT-TAACAAACGCATTCAGTAATGGAT-TAC
488 ATTTTTA---AAAAAATTATTAAAGGCGT-TGTTATCT-GCAACCGCATTCACTAAT-AATCTAC
* * * * * * * *
6830723 TAAGT-TTAAAGATA-TATTGAAGGCAT-TTT-TTCGAATAAATGCC-T---T--CCA---TAAA
547 AAACTGTGATAGAAATTATTAAAGGCATCTTTCTT-GAATATACGCCTTCAATAACCATGTTAAA
* * * * * * *
6830775 CA--T-CGT---GGTATATTGAAGGCATTTCATAATAAAAGATGCCTTTAATAATCTGAAAAAAA
611 -ATTTATGTGGCGGTATATAGAAGGCATTTTATAGTAGAAGATGCCTTTAATAAT-T--CACAAA
* *
6830834 AAATTT--T-AAAAAATTATTGAAGGCGT-
672 ATATTTAGTGAGAAAATT-TTGAAGGCGTC
* * *
6830860 TGTTATCTACAATCTCATTCACTAATTATCTACAAACTGTGATAGAATTATTAAAAGTGTCTTTC
1 TGTTATCTACAA-CTCCTTCACTAATTATCTACAAACT-TGATAGAGTTATTAAAAGTAT-TTTC
* * *
6830925 TTAGATATACGCCTTTAATAACCGTGTTAAAATTTATGTGGCAGTATATATAAGGTATTTTATAG
63 TTAGATATACGCCTTCAATAACCG-GTTAAAATTTATGT-GC-GTATATATAAGGCATTTTATAA
* * *
6830990 TAAAAGACGCCTTTAATGATTCCCAAAATGTTTAGTGAGAAAATTTTAAAGGCATCTGTTATTAA
125 TAAAAGACGCCTTTAATAATTCACAAAAT-TTTAGTGAGAAAATTTTGAAGGCAT-TGTTATTAA
* * *
6831055 CAAACGTCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGGAGGCACTTTTTCGAATAAATG
188 CAAACGCCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGCACTTTTT-GAATAAACG
* *
6831120 CTTTCCATAACCATTGTGGTATATTGAAGGTGTTTCATAATAAAAGATACCTTTAATAATCCGAA
252 CCTTCCATAACCATTGTGGTATATTGAAGGTATTTCATAATAAAAGATACCTTTAATAATCCGAA
*
6831185 AATTTTTTTTTAAGAAAATTATTGAAGGCATTGTTATTAACAAATGCCTTCAGTAATGGATTACT
317 AA-TTTTTTTTAAGAAAATTATTGAAGGCGTTGTTATTAACAAATGCCTTCAGTAATGGATTACT
*
6831250 AAGTTTAAAGATATATTAAAGGTGCTTTTTTGAATAAACGCCTTCCATAACCATCGTGGTATATT
381 AAGTTTAAAGATATATTAAAGGCG-TTTTTTGAATAAACGCCTTCCATAACCATCGTGGTATATT
*
6831315 GAAGGCGTTTTATAATAAAAGACGCCTTTAATAATCTAAAAAAAAACTTTTAAAAAAATTATTAA
445 GAAGGCGTTTTATAATAAAAGACGCCTTTAATAATCT--AAAAAAATTTTTAAAAAAATTATTAA
* * * *
6831380 ATGTGTTGTTATCTGCAACCGCATTCACTAATTATCTACAAACTGTGATAGAAATTATTAAAAGC
508 AGGCGTTGTTATCTGCAACCGCATTCACTAATAATCTACAAACTGTGATAGAAATTATTAAAGGC
* * *
6831445 GTCTTTCTTGAATGTACGCCTTCAATAACCATGTTAAAATTTATGTGGCGGTATATAAAAGGCAT
573 ATCTTTCTTGAATATACGCCTTCAATAACCATGTTAAAATTTATGTGGCGGTATATAGAAGGCAT
* * * * *
6831510 TTTACAGTAGATGATGCCTTTAATGATTCCCAAAATGTTTAGTGAGAAAATTTTGAAGGCGTC
638 TTTATAGTAGAAGATGCCTTTAATAATTCACAAAATATTTAGTGAGAAAATTTTGAAGGCGTC
* * * * * * * *
6831573 TATTAT-TAACAAACGCCTTCAGTAATTGAT-TACTAAGTTTAAAG-GTATATT-GAAGTATTTT
1 TGTTATCT-AC-AACTCCTTCACTAATT-ATCTACAAACTTGATAGAGT-TATTAAAAGTATTTT
* * * * * *
6831634 TTTCGAATAAACGCCTTCCATAACC-------A--T-CGTG-GTATAT-TGAAGGCATTTCATAA
62 CTTAG-ATATACGCCTTCAATAACCGGTTAAAATTTATGTGCGTATATAT-AAGGCATTTTATAA
* ** *
6831687 TAAAAGACGCCTTTAATAATTCAAAAAATTTTTTTAAGAAAATTATTGAAGGCATTGTTATCT-A
125 TAAAAGACGCCTTTAATAATTCACAAAATTTTAGTGAGAAAATT-TTGAAGGCATTGTTAT-TAA
* * * * * * * * * *
6831751 CAACCGCCTTCACTAAT-TATCTACAAACTATGATA-GAATTATTAAAGGCATCTTTCTTGGATA
188 CAAACGCCTTCAGTAATGGAT-TACTAAGT-TTAAAGGTA-TATTGAAGGCA-CTTT-TTGAATA
* * ** * * * *
6831814 TACGCCTTCAATAACCGTGTTAAAATTTGTGTGGCGGTATATAAAAGGTATTTTACAGTAGAAGA
248 AACGCCTTCCATAACC--------A--T-TGT---GGTATATTGAAGGTATTTCATAATAAAAGA
* * * ** * **
6831879 TGCCTTTAATAATTTCAAAAATTTTTGGTGAGAAAATT-TTGAAGGCGTCTGTTATTAACAAACA
299 TACCTTTAATAA-TCCGAAAATTTTTTTTAAGAAAATTATTGAAGGCGT-TGTTATTAACAAATG
* * *
6831943 CCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGCGTTTTTTTGAATAAACACCTTCC
362 CCTTCAGTAATGGATTACTAAGTTTAAAGATATATTAAAGGCG-TTTTTTGAATAAACGCCTTCC
* **
6832008 ATAACCATCGTGGTATATTGAAGGCGTTTTATAATAAAAGACGCCTTTAATAATCCGAAAAATTT
426 ATAACCATCGTGGTATATTGAAGGCGTTTTATAATAAAAGACGCCTTTAATAAT-CTAAAAAAAT
* ** * * * * *
6832073 TTTTTAAGGAATTATTAAAGGCGTTGTTATCTGTAACTGCCTTCGCTAATAATCTACAAATTGTG
490 TTTTAAAAAAATTATTAAAGGCGTTGTTATCTGCAACCGCATTCACTAATAATCTACAAACTGTG
* *
6832138 ATA-AGAATTATTAAAGGCATCTTTCTT-AGATATACGTCTTCAATAACCGTGTTAAAATTTATG
555 ATAGA-AATTATTAAAGGCATCTTTCTTGA-ATATACGCCTTCAATAACCATGTTAAAATTTATG
** * * * *
6832201 TGGCGGTATATAGAAGGCATTTTATAGTAGAAGACACTTTTAATAATTCTCAAAATTTTTAGTGG
618 TGGCGGTATATAGAAGGCATTTTATAGTAGAAGATGCCTTTAATAATTCACAAAATATTTAGTGA
6832266 GAAAATTTTGAAGGCGTC
683 GAAAATTTTGAAGGCGTC
6832284 TGTTAT
1 TGTTAT
6832290 TAACAAACAC
Statistics
Matches: 1176, Mismatches: 181, Indels: 148
0.78 0.12 0.10
Matches are distributed among these distances:
695 4 0.00
696 108 0.09
697 81 0.07
698 33 0.03
699 24 0.02
700 5 0.00
701 1 0.00
702 2 0.00
703 4 0.00
705 3 0.00
706 1 0.00
707 1 0.00
708 5 0.00
709 4 0.00
710 38 0.03
711 248 0.21
712 442 0.38
713 162 0.14
714 10 0.01
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (700 bp):
TGTTATCTACAACTCCTTCACTAATTATCTACAAACTTGATAGAGTTATTAAAAGTATTTTCTTA
GATATACGCCTTCAATAACCGGTTAAAATTTATGTGCGTATATATAAGGCATTTTATAATAAAAG
ACGCCTTTAATAATTCACAAAATTTTAGTGAGAAAATTTTGAAGGCATTGTTATTAACAAACGCC
TTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGCACTTTTTGAATAAACGCCTTCCATA
ACCATTGTGGTATATTGAAGGTATTTCATAATAAAAGATACCTTTAATAATCCGAAAATTTTTTT
TAAGAAAATTATTGAAGGCGTTGTTATTAACAAATGCCTTCAGTAATGGATTACTAAGTTTAAAG
ATATATTAAAGGCGTTTTTTGAATAAACGCCTTCCATAACCATCGTGGTATATTGAAGGCGTTTT
ATAATAAAAGACGCCTTTAATAATCTAAAAAAATTTTTAAAAAAATTATTAAAGGCGTTGTTATC
TGCAACCGCATTCACTAATAATCTACAAACTGTGATAGAAATTATTAAAGGCATCTTTCTTGAAT
ATACGCCTTCAATAACCATGTTAAAATTTATGTGGCGGTATATAGAAGGCATTTTATAGTAGAAG
ATGCCTTTAATAATTCACAAAATATTTAGTGAGAAAATTTTGAAGGCGTC
Found at i:6831762 original size:526 final size:525
Alignment explanation
Indices: 6830613--6831767 Score: 1660
Period size: 526 Copynumber: 2.2 Consensus size: 525
6830603 TGTGTGACGA
* * * * * ** *
6830613 TATATAGAAGGCATTTTACAGTAGAAGACGCCTTTAATAATTTTAAAAATTTTTAGTGAA-AAAA
1 TATATTGAAGGCATTTCATAATAAAAGACGCCTTTAATAATTCAAAAAATTTTT--TTAAGAAAA
* *
6830677 TT-TTGAAGGCGTCTGTTATTAACAAACGCATTCAGTAATGGATTACTAAGTTTAAAGATATATT
64 TTATTGAAGGCAT-TGTTATTAACAAACGCCTTCAGTAATGGATTACTAAGTTTAAAGATATATT
* *
6830741 GAAGGCATTTTTTCGAATAAATGCCTTCCATAAACATCGTGGTATATTGAAGGCATTTCATAATA
128 AAAGGCATTTTTTCGAATAAACGCCTTCCATAAACATCGTGGTATATTGAAGGCATTTCATAATA
* *
6830806 AAAGATGCCTTTAATAATCTGAAAAAAAAAATTTTAAAAAATTATTGAAGGCGTTGTTATCTACA
193 AAAGACGCCTTTAATAATCTGAAAAAAAAAATTTTAAAAAATTATTAAAGGCGTTGTTATCTACA
* * *
6830871 ATCTCATTCACTAATTATCTACAAACTGTGATAGAATTATTAAAAGTGTCTTTCTTAGATATACG
258 ACCGCATTCACTAATTATCTACAAACTGTGATAGAATTATTAAAAGCGTCTTTCTTAGATATACG
* * * * *
6830936 CCTTTAATAACCGTGTTAAAATTTATGTGGCAGTATATATAAGGTATTTTATAGTAAAAGACGCC
323 CCTTCAATAACCATGTTAAAATTTATGTGGCAGTATATAAAAGGCATTTTACAGTAAAAGACGCC
* *
6831001 TTTAATGATTCCCAAAATGTTTAGTGAGAAAATTTTAAAGGCATCTGTTATTAACAAACGTCTTC
388 TTTAATGATTCCCAAAATGTTTAGTGAGAAAATTTTAAAGGCATCTATTATTAACAAACGCCTTC
* * *
6831066 AGTAATGGATTACTAAGTTTAAAGGTATATTGGAGGCACTTTTTCGAATAAATGCTTTCCATAAC
453 AGTAATGGATTACTAAGTTTAAAGGTATATTGGAAGCACTTTTTCGAATAAACGCCTTCCATAAC
*
6831131 CATTGTGG
518 CATCGTGG
** ** * **
6831139 TATATTGAAGGTGTTTCATAATAAAAGATACCTTTAATAATCCGAAAATTTTTTTTTAAGAAAAT
1 TATATTGAAGGCATTTCATAATAAAAGACGCCTTTAATAATTC-AAAAAATTTTTTTAAGAAAAT
*
6831204 TATTGAAGGCATTGTTATTAACAAATGCCTTCAGTAATGGATTACTAAGTTTAAAGATATATTAA
65 TATTGAAGGCATTGTTATTAACAAACGCCTTCAGTAATGGATTACTAAGTTTAAAGATATATTAA
* * *
6831269 AGGTGC-TTTTTT-GAATAAACGCCTTCCATAACCATCGTGGTATATTGAAGGCGTTTTATAATA
130 A-G-GCATTTTTTCGAATAAACGCCTTCCATAAACATCGTGGTATATTGAAGGCATTTCATAATA
* * * *
6831332 AAAGACGCCTTTAATAATCT-AAAAAAAAACTTTTAAAAAAATTATTAAATGTGTTGTTATCTGC
193 AAAGACGCCTTTAATAATCTGAAAAAAAAAATTTT-AAAAAATTATTAAAGGCGTTGTTATCTAC
*
6831396 AACCGCATTCACTAATTATCTACAAACTGTGATAGAAATTATTAAAAGCGTCTTTCTT-GAATGT
257 AACCGCATTCACTAATTATCTACAAACTGTGATAG-AATTATTAAAAGCGTCTTTCTTAG-ATAT
* * * *
6831460 ACGCCTTCAATAACCATGTTAAAATTTATGTGGCGGTATATAAAAGGCATTTTACAGTAGATGAT
320 ACGCCTTCAATAACCATGTTAAAATTTATGTGGCAGTATATAAAAGGCATTTTACAGTAAAAGAC
* *
6831525 GCCTTTAATGATTCCCAAAATGTTTAGTGAGAAAATTTTGAAGGCGTCTATTATTAACAAACGCC
385 GCCTTTAATGATTCCCAAAATGTTTAGTGAGAAAATTTTAAAGGCATCTATTATTAACAAACGCC
* * *
6831590 TTCAGTAATTGATTACTAAGTTTAAAGGTATATT-GAAGTATTTTTTTCGAATAAACGCCTTCCA
450 TTCAGTAATGGATTACTAAGTTTAAAGGTATATTGGAAGCA-CTTTTTCGAATAAACGCCTTCCA
6831654 TAACCATCGTGG
514 TAACCATCGTGG
6831666 TATATTGAAGGCATTTCATAATAAAAGACGCCTTTAATAATTCAAAAAATTTTTTTAAGAAAATT
1 TATATTGAAGGCATTTCATAATAAAAGACGCCTTTAATAATTCAAAAAATTTTTTTAAGAAAATT
* *
6831731 ATTGAAGGCATTGTTATCT-ACAACCGCCTTCACTAAT
66 ATTGAAGGCATTGTTAT-TAACAAACGCCTTCAGTAAT
6831768 TATCTACAAA
Statistics
Matches: 556, Mismatches: 63, Indels: 20
0.87 0.10 0.03
Matches are distributed among these distances:
525 16 0.03
526 270 0.49
527 268 0.48
528 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.36
Consensus pattern (525 bp):
TATATTGAAGGCATTTCATAATAAAAGACGCCTTTAATAATTCAAAAAATTTTTTTAAGAAAATT
ATTGAAGGCATTGTTATTAACAAACGCCTTCAGTAATGGATTACTAAGTTTAAAGATATATTAAA
GGCATTTTTTCGAATAAACGCCTTCCATAAACATCGTGGTATATTGAAGGCATTTCATAATAAAA
GACGCCTTTAATAATCTGAAAAAAAAAATTTTAAAAAATTATTAAAGGCGTTGTTATCTACAACC
GCATTCACTAATTATCTACAAACTGTGATAGAATTATTAAAAGCGTCTTTCTTAGATATACGCCT
TCAATAACCATGTTAAAATTTATGTGGCAGTATATAAAAGGCATTTTACAGTAAAAGACGCCTTT
AATGATTCCCAAAATGTTTAGTGAGAAAATTTTAAAGGCATCTATTATTAACAAACGCCTTCAGT
AATGGATTACTAAGTTTAAAGGTATATTGGAAGCACTTTTTCGAATAAACGCCTTCCATAACCAT
CGTGG
Found at i:6831957 original size:882 final size:882
Alignment explanation
Indices: 6830287--6832102 Score: 2647
Period size: 882 Copynumber: 2.1 Consensus size: 882
6830277 ATAGAAAACG
** * * *
6830287 CCTTTAATAATTCTC-AAAATTTTTAGTGAA-AAAATT-TTGAAGGCGTTTATTATTAACAAACG
1 CCTTTAATAA-TC-CGAAAATTTTTTTTTAAGAAAATTATTGAAGGC-ATTGTTATTAACAAACG
* *
6830349 CCTTCAGTAATGGATTACTAAGTTTAAAGATATATTGAAGGCATTTTTTTGAATAAACACCTTCC
63 CCTTCAGTAATGGATTACTAAGTTTAAAGATATATTAAAGGCACTTTTTTGAATAAACACCTTCC
* ****
6830414 ATAACCATCATGGTATATTGAAGGCATTTCATAATAAAAGACACCTTTAATAATCTGAAAATTTT
128 ATAACCATCATGGTATATTGAAGGCATTTCATAATAAAAGACACCTTTAATAATCTAAAAAAAAC
* * * *
6830479 TTTTAAGAAAATTATTGAAGGCGTTGTTATCTACAATCGCCTTCACTAATTACCTACAAACTGTG
193 TTTTAAAAAAATTATTAAAGGCGTTGTTATCTACAACCGCATTCACTAATTACCTACAAACTGTG
* * *
6830544 ATAGAAATTATTAAAGGCGTATTTCTTGGATATACGCCTTCAATAACCACGTTAAAATTTGTGTG
258 ATAGAAATTATTAAAAGCGTATTTCTTGAATATACGCCTTCAATAACCACGTTAAAATTTATGTG
* ** *
6830609 ACGATATATAGAAGGCATTTTACAGTAGAAGACGCCTTTAATAATTTTAAAAATTTTTAGTGAAA
323 ACGATATATAAAAGGCATTTTACAGTAGAAGACGCCTTTAATAATTCCAAAAATGTTTAGTGAAA
*
6830674 AAATTTTGAAGGCGTCTGTTATTAACAAACGCATTCAGTAATGGATTACTAAGTTTAAAGATATA
388 AAATTTTGAAGGCGTCTATTATTAACAAACGCATTCAGTAATGGATTACTAAGTTTAAAGATATA
*
6830739 TTGAAGGCATTTTTTCGAATAAATGCCTTCCATAAACATCGTGGTATATTGAAGGCATTTCATAA
453 TTGAAGGCATTTTTTCGAATAAACGCCTTCCATAAACATCGTGGTATATTGAAGGCATTTCATAA
* *
6830804 TAAAAGATGCCTTTAATAATCTGAAAAAAAAAATTTTAAAAAATTATTGAAGGCGTTGTTATCTA
518 TAAAAGACGCCTTTAATAATCTGAAAAAAAAAATTTTAAAAAATTATTGAAGGCATTGTTATCTA
* * * **
6830869 CAATCTCATTCACTAATTATCTACAAACTGTGATAGAATTATTAAAAGTGTCTTTCTTAGATATA
583 CAACCGCATTCACTAATTATCTACAAACTATGATAGAATTATTAAAAGCATCTTTCTTAGATATA
* * *
6830934 CGCCTTTAATAACCGTGTTAAAATTTATGTGGCAGTATATATAAGGTATTTTATAGTAAAAGACG
648 CGCCTTCAATAACCGTGTTAAAATTTATGTGGCAGTATATAAAAGGTATTTTACAGTAAAAGACG
* * **
6830999 CCTTTAATGATTCCCAAAATGTTTAGTGAGAAAATTTTAAAGGCATCTGTTATTAACAAACGTCT
713 CCTTTAATAATTCCAAAAATGTTTAGTGAGAAAATTTTAAAGGCATCTGTTATTAACAAACACCT
* ** *
6831064 TCAGTAATGGATTACTAAGTTTAAAGGTATATTGGAGGCACTTTTTCGAATAAATGCTTTCCATA
778 TCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGCACTTTTTCGAATAAACACCTTCCATA
* * *
6831129 ACCATTGTGGTATATTGAAGGTGTTTCATAATAAAAGATA
843 ACCATCGTGGTATATTGAAGGCGTTTCATAATAAAAGACA
*
6831169 CCTTTAATAATCCGAAAATTTTTTTTTAAGAAAATTATTGAAGGCATTGTTATTAACAAATGCCT
1 CCTTTAATAATCCGAAAATTTTTTTTTAAGAAAATTATTGAAGGCATTGTTATTAACAAACGCCT
** *
6831234 TCAGTAATGGATTACTAAGTTTAAAGATATATTAAAGGTGCTTTTTTGAATAAACGCCTTCCATA
66 TCAGTAATGGATTACTAAGTTTAAAGATATATTAAAGGCACTTTTTTGAATAAACACCTTCCATA
* * * *
6831299 ACCATCGTGGTATATTGAAGGCGTTTTATAATAAAAGACGCCTTTAATAATCTAAAAAAAAACTT
131 ACCATCATGGTATATTGAAGGCATTTCATAATAAAAGACACCTTTAATAATCT-AAAAAAAACTT
* * * *
6831364 TTAAAAAAATTATTAAATGTGTTGTTATCTGCAACCGCATTCACTAATTATCTACAAACTGTGAT
195 TTAAAAAAATTATTAAAGGCGTTGTTATCTACAACCGCATTCACTAATTACCTACAAACTGTGAT
* * * *
6831429 AGAAATTATTAAAAGCGTCTTTCTTGAATGTACGCCTTCAATAACCATGTTAAAATTTATGTGGC
260 AGAAATTATTAAAAGCGTATTTCTTGAATATACGCCTTCAATAACCACGTTAAAATTTATGTGAC
* * * * * *
6831494 GGTATATAAAAGGCATTTTACAGTAGATGATGCCTTTAATGATTCCCAAAATGTTTAGTGAGAAA
325 GATATATAAAAGGCATTTTACAGTAGAAGACGCCTTTAATAATTCCAAAAATGTTTAGTGAAAAA
* * *
6831559 ATTTTGAAGGCGTCTATTATTAACAAACGCCTTCAGTAATTGATTACTAAGTTTAAAGGTATATT
390 ATTTTGAAGGCGTCTATTATTAACAAACGCATTCAGTAATGGATTACTAAGTTTAAAGATATATT
* *
6831624 GAA-GTATTTTTTTCGAATAAACGCCTTCCATAACCATCGTGGTATATTGAAGGCATTTCATAAT
455 GAAGGCA-TTTTTTCGAATAAACGCCTTCCATAAACATCGTGGTATATTGAAGGCATTTCATAAT
* ***
6831688 AAAAGACGCCTTTAATAAT-T-CAAAAAATTTTTTTAAGAAAATTATTGAAGGCATTGTTATCTA
519 AAAAGACGCCTTTAATAATCTGAAAAAAAAAATTTTAA-AAAATTATTGAAGGCATTGTTATCTA
* * *
6831751 CAACCGCCTTCACTAATTATCTACAAACTATGATAGAATTATTAAAGGCATCTTTCTTGGATATA
583 CAACCGCATTCACTAATTATCTACAAACTATGATAGAATTATTAAAAGCATCTTTCTTAGATATA
* * * *
6831816 CGCCTTCAATAACCGTGTTAAAATTTGTGTGGCGGTATATAAAAGGTATTTTACAGTAGAAGATG
648 CGCCTTCAATAACCGTGTTAAAATTTATGTGGCAGTATATAAAAGGTATTTTACAGTAAAAGACG
* * * * *
6831881 CCTTTAATAATTTCAAAAATTTTTGGTGAGAAAATTTTGAAGGCGTCTGTTATTAACAAACACCT
713 CCTTTAATAATTCCAAAAATGTTTAGTGAGAAAATTTTAAAGGCATCTGTTATTAACAAACACCT
** *
6831946 TCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGCGTTTTTTTGAATAAACACCTTCCATA
778 TCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGCACTTTTTCGAATAAACACCTTCCATA
* *
6832011 ACCATCGTGGTATATTGAAGGCGTTTTATAATAAAAGACG
843 ACCATCGTGGTATATTGAAGGCGTTTCATAATAAAAGACA
* * * *
6832051 CCTTTAATAATCCGAAAAATTTTTTTTAAG-GAATTATTAAAGGCGTTGTTAT
1 CCTTTAATAATCCGAAAATTTTTTTTTAAGAAAATTATTGAAGGCATTGTTAT
6832103 CTGTAACTGC
Statistics
Matches: 830, Mismatches: 98, Indels: 13
0.88 0.10 0.01
Matches are distributed among these distances:
880 1 0.00
881 45 0.05
882 463 0.56
883 321 0.39
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (882 bp):
CCTTTAATAATCCGAAAATTTTTTTTTAAGAAAATTATTGAAGGCATTGTTATTAACAAACGCCT
TCAGTAATGGATTACTAAGTTTAAAGATATATTAAAGGCACTTTTTTGAATAAACACCTTCCATA
ACCATCATGGTATATTGAAGGCATTTCATAATAAAAGACACCTTTAATAATCTAAAAAAAACTTT
TAAAAAAATTATTAAAGGCGTTGTTATCTACAACCGCATTCACTAATTACCTACAAACTGTGATA
GAAATTATTAAAAGCGTATTTCTTGAATATACGCCTTCAATAACCACGTTAAAATTTATGTGACG
ATATATAAAAGGCATTTTACAGTAGAAGACGCCTTTAATAATTCCAAAAATGTTTAGTGAAAAAA
TTTTGAAGGCGTCTATTATTAACAAACGCATTCAGTAATGGATTACTAAGTTTAAAGATATATTG
AAGGCATTTTTTCGAATAAACGCCTTCCATAAACATCGTGGTATATTGAAGGCATTTCATAATAA
AAGACGCCTTTAATAATCTGAAAAAAAAAATTTTAAAAAATTATTGAAGGCATTGTTATCTACAA
CCGCATTCACTAATTATCTACAAACTATGATAGAATTATTAAAAGCATCTTTCTTAGATATACGC
CTTCAATAACCGTGTTAAAATTTATGTGGCAGTATATAAAAGGTATTTTACAGTAAAAGACGCCT
TTAATAATTCCAAAAATGTTTAGTGAGAAAATTTTAAAGGCATCTGTTATTAACAAACACCTTCA
GTAATGGATTACTAAGTTTAAAGGTATATTGAAGGCACTTTTTCGAATAAACACCTTCCATAACC
ATCGTGGTATATTGAAGGCGTTTCATAATAAAAGACA
Found at i:6832283 original size:356 final size:355
Alignment explanation
Indices: 6831163--6832560 Score: 1973
Period size: 355 Copynumber: 3.9 Consensus size: 355
6831153 TTCATAATAA
* ** * *
6831163 AAGATACCTTTAATAA-TC-CGAAAATTTTTTTTTAAGAAAATTATTGAAGGCAT-TGTTATTAA
1 AAGATGCCTTTAATAATTCTC-AAAA-TTTTTAGTGAGAAAATT-TTGAAGGCGTCTGTTATTAA
** * * **
6831225 CAAATGCCTTCAGTAATGGATTACTAAGTTTAAAGATATATTAAAGGTGCTTTTTTGAATAAACG
63 CAAACACCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGCACTTTTTTGAATAAACG
* * *
6831290 CCTTCCATAACCATCGTGGTATATTGAAGGCGTTTTATAATAAAAGACGCCTTTAATAATCTAAA
128 CCTTCCATAACCATCGTGGTATATTGAAGGCATTTCATAATAAAAGACGCCTTTAATAATC-CAA
*** * * * *
6831355 AAAAAACTTTTAAAAAAATTATTAAATGTGTTGTTATCTGCAACCGCATTCACTAATTATCTACA
192 AAAATTTTTTTAAGAAAATTATTAAAGGCGTTGTTATCTGCAACCGCCTTCACTAATTATCTACA
* * * * *
6831420 AACTGTGATAGAAATTATTAAAAGCGTCTTTCTTGAATGTACGCCTTCAATAACCATGTTAAAAT
257 AACTGTGATAG-AATTATTAAAGGCATCTTTCTTGGATATACGCCTTCAATAACCGTGTTAAAAT
6831485 TTATGTGGCGGTATATAAAAGGCATTTTACAGTAG
321 TTATGTGGCGGTATATAAAAGGCATTTTACAGTAG
* * * * *
6831520 ATGATGCCTTTAATGATTCCCAAAATGTTTAGTGAGAAAATTTTGAAGGCGTCTATTATTAACAA
1 AAGATGCCTTTAATAATTCTCAAAATTTTTAGTGAGAAAATTTTGAAGGCGTCTGTTATTAACAA
* * * *
6831585 ACGCCTTCAGTAATTGATTACTAAGTTTAAAGGTATATTGAA-GTATTTTTTTCGAATAAACGCC
66 ACACCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGCACTTTTTT-GAATAAACGCC
*
6831649 TTCCATAACCATCGTGGTATATTGAAGGCATTTCATAATAAAAGACGCCTTTAATAATTCAAAAA
130 TTCCATAACCATCGTGGTATATTGAAGGCATTTCATAATAAAAGACGCCTTTAATAATCCAAAAA
* * *
6831714 ATTTTTTTAAGAAAATTATTGAAGGCATTGTTATCTACAACCGCCTTCACTAATTATCTACAAAC
195 ATTTTTTTAAGAAAATTATTAAAGGCGTTGTTATCTGCAACCGCCTTCACTAATTATCTACAAAC
* *
6831779 TATGATAGAATTATTAAAGGCATCTTTCTTGGATATACGCCTTCAATAACCGTGTTAAAATTTGT
260 TGTGATAGAATTATTAAAGGCATCTTTCTTGGATATACGCCTTCAATAACCGTGTTAAAATTTAT
*
6831844 GTGGCGGTATATAAAAGGTATTTTACAGTAG
325 GTGGCGGTATATAAAAGGCATTTTACAGTAG
*
6831875 AAGATGCCTTTAATAATT-TCAAAAATTTTTGGTGAGAAAATTTTGAAGGCGTCTGTTATTAACA
1 AAGATGCCTTTAATAATTCTC-AAAATTTTTAGTGAGAAAATTTTGAAGGCGTCTGTTATTAACA
** *
6831939 AACACCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGCGTTTTTTTGAATAAACACC
65 AACACCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGCACTTTTTTGAATAAACGCC
* *
6832004 TTCCATAACCATCGTGGTATATTGAAGGCGTTTTATAATAAAAGACGCCTTTAATAATCCGAAAA
130 TTCCATAACCATCGTGGTATATTGAAGGCATTTCATAATAAAAGACGCCTTTAATAATCC-AAAA
* * * * * *
6832069 ATTTTTTTTAAG-GAATTATTAAAGGCGTTGTTATCTGTAACTGCCTTCGCTAATAATCTACAAA
194 AATTTTTTTAAGAAAATTATTAAAGGCGTTGTTATCTGCAACCGCCTTCACTAATTATCTACAAA
* * *
6832133 TTGTGATAAGAATTATTAAAGGCATCTTTCTTAGATATACGTCTTCAATAACCGTGTTAAAATTT
259 CTGTGAT-AGAATTATTAAAGGCATCTTTCTTGGATATACGCCTTCAATAACCGTGTTAAAATTT
* *
6832198 ATGTGGCGGTATATAGAAGGCATTTTATAGTAG
323 ATGTGGCGGTATATAAAAGGCATTTTACAGTAG
** * *
6832231 AAGACACTTTTAATAATTCTCAAAATTTTTAGTGGGAAAATTTTGAAGGCGTCTGTTATTAACAA
1 AAGATGCCTTTAATAATTCTCAAAATTTTTAGTGAGAAAATTTTGAAGGCGTCTGTTATTAACAA
* * * *
6832296 ACACTTTCAGTAATAGATTACTAAGTTTAAACGTATATTGAAGGCACTTTTTTGAATAAACGTCT
66 ACACCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGCACTTTTTTGAATAAACGCCT
* * *
6832361 TTCATAACCATCATGGTATATTGAAGGCATTTCATAATAAAAGATGCCTTTAATAATCC-AAAAA
131 TCCATAACCATCGTGGTATATTGAAGGCATTTCATAATAAAAGACGCCTTTAATAATCCAAAAAA
* * *
6832425 TTTTTTTAAGAAAATTATTGAAGGTGTTGTTATCTGCAACCGCCTTCACTAATTATCTACAAATT
196 TTTTTTTAAGAAAATTATTAAAGGCGTTGTTATCTGCAACCGCCTTCACTAATTATCTACAAACT
** *
6832490 GTGATAGGAATTATTAAAGGTGTCTTTCTTGGATATACGCCTTCAATAACCGTGTTAAAATTTGT
261 GTGATA-GAATTATTAAAGGCATCTTTCTTGGATATACGCCTTCAATAACCGTGTTAAAATTTAT
6832555 GTGGCG
325 GTGGCG
6832561 ATATGTTCAA
Statistics
Matches: 932, Mismatches: 98, Indels: 24
0.88 0.09 0.02
Matches are distributed among these distances:
354 16 0.02
355 405 0.43
356 360 0.39
357 144 0.15
358 6 0.01
359 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.36
Consensus pattern (355 bp):
AAGATGCCTTTAATAATTCTCAAAATTTTTAGTGAGAAAATTTTGAAGGCGTCTGTTATTAACAA
ACACCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGCACTTTTTTGAATAAACGCCT
TCCATAACCATCGTGGTATATTGAAGGCATTTCATAATAAAAGACGCCTTTAATAATCCAAAAAA
TTTTTTTAAGAAAATTATTAAAGGCGTTGTTATCTGCAACCGCCTTCACTAATTATCTACAAACT
GTGATAGAATTATTAAAGGCATCTTTCTTGGATATACGCCTTCAATAACCGTGTTAAAATTTATG
TGGCGGTATATAAAAGGCATTTTACAGTAG
Found at i:6832295 original size:711 final size:712
Alignment explanation
Indices: 6831197--6832560 Score: 2119
Period size: 711 Copynumber: 1.9 Consensus size: 712
6831187 TTTTTTTTTA
**
6831197 AGAAAATTATTGAAGGCATTGTTATTAACAAATGCCTTCAGTAATGGATTACTAAGTTTAAAGAT
1 AGAAAATTATTGAAGGCATTGTTATTAACAAACACCTTCAGTAATGGATTACTAAGTTTAAAGAT
* *
6831262 ATATTAAAGGTGCTTTTTTGAATAAACGCCTTCCATAACCATCGTGGTATATTGAAGGCGTTTTA
66 ATATTAAAGGCGCTTTTTTGAATAAACACCTTCCATAACCATCGTGGTATATTGAAGGCGTTTTA
* *
6831327 TAATAAAAGACGCCTTTAATAATCTAAAAAAAAACTTTTAAAAAAATTATTAAATGTGTTGTTAT
131 TAATAAAAGACGCCTTTAATAATCTAAAAAAAAACTTTTAAAAAAATTATTAAAGGCGTTGTTAT
* *
6831392 CTGCAACCGCATTCACTAATTATCTACAAACTGTGATAGAAATTATTAAAAGCGTCTTTCTTGAA
196 CTGCAACCGCATTCACTAATAATCTACAAACTGTGATAGAAATTATTAAAAGCATCTTTCTTGAA
* *
6831457 TGTACGCCTTCAATAACCATGTTAAAATTTATGTGGCGGTATATAAAAGGCATTTTACAGTAGAT
261 TATACGCCTTCAATAACCATGTTAAAATTTATGTGGCGGTATATAAAAGGCATTTTACAGTAGAA
** *
6831522 GATGCCTTTAATGATTCCCAAAATGTTTAGTGAGAAAATTTTGAAGGCGTCTATTATTAACAAAC
326 GACACCTTTAATAATTCCCAAAATGTTTAGTGAGAAAATTTTGAAGGCGTCTATTATTAACAAAC
* * * * *
6831587 GCCTTCAGTAATTGATTACTAAGTTTAAAGGTATATTGAA-GTATTTTTTTCGAATAAACGCCTT
391 ACCTTCAGTAATAGATTACTAAGTTTAAACGTATATTGAAGGCACTTTTTT-GAATAAACGCCTT
*
6831651 CCATAACCATCGTGGTATATTGAAGGCATTTCATAATAAAAGACGCCTTTAATAATTCAAAAAAT
455 CCATAACCATCATGGTATATTGAAGGCATTTCATAATAAAAGACGCCTTTAATAA-TCAAAAAAT
6831716 TTTTTTAAGAAAATTATTGAAGGCATTGTTATCTACAACCGCCTTCACTAATTATCTACAAACTA
519 TTTTTTAAGAAAATTATTGAAGGCATTGTTATCTACAACCGCCTTCACTAATTATCTACAAACTA
6831781 TGATA-GAATTATTAAAGGCATCTTTCTTGGATATACGCCTTCAATAACCGTGTTAAAATTTGTG
584 TGATAGGAATTATTAAAGGCATCTTTCTTGGATATACGCCTTCAATAACCGTGTTAAAATTTGTG
6831845 TGGCGGTATATAAAAGGTATTTTACAGTAGAAGATGCCTTTAATAATTTCAAAAATTTTTGGTG
649 TGGCGGTATATAAAAGGTATTTTACAGTAGAAGATGCCTTTAATAATTTCAAAAATTTTTGGTG
* *
6831909 AGAAAATT-TTGAAGGCGTCTGTTATTAACAAACACCTTCAGTAATGGATTACTAAGTTTAAAGG
1 AGAAAATTATTGAAGGCAT-TGTTATTAACAAACACCTTCAGTAATGGATTACTAAGTTTAAAGA
* *
6831973 TATATTGAAGGCGTTTTTTTGAATAAACACCTTCCATAACCATCGTGGTATATTGAAGGCGTTTT
65 TATATTAAAGGCGCTTTTTTGAATAAACACCTTCCATAACCATCGTGGTATATTGAAGGCGTTTT
** *** * **
6832038 ATAATAAAAGACGCCTTTAATAATC-CGAAAAATTTTTTTTAAGGAATTATTAAAGGCGTTGTTA
130 ATAATAAAAGACGCCTTTAATAATCTAAAAAAAAACTTTTAAAAAAATTATTAAAGGCGTTGTTA
* * * * * *
6832102 TCTGTAACTGCCTTCGCTAATAATCTACAAATTGTGATA-AGAATTATTAAAGGCATCTTTCTT-
195 TCTGCAACCGCATTCACTAATAATCTACAAACTGTGATAGA-AATTATTAAAAGCATCTTTCTTG
* * * *
6832165 AGATATACGTCTTCAATAACCGTGTTAAAATTTATGTGGCGGTATATAGAAGGCATTTTATAGTA
259 A-ATATACGCCTTCAATAACCATGTTAAAATTTATGTGGCGGTATATAAAAGGCATTTTACAGTA
* * * * *
6832230 GAAGACACTTTTAATAATTCTCAAAATTTTTAGTGGGAAAATTTTGAAGGCGTCTGTTATTAACA
323 GAAGACACCTTTAATAATTCCCAAAATGTTTAGTGAGAAAATTTTGAAGGCGTCTATTATTAACA
* *
6832295 AACACTTTCAGTAATAGATTACTAAGTTTAAACGTATATTGAAGGCACTTTTTTGAATAAACGTC
388 AACACCTTCAGTAATAGATTACTAAGTTTAAACGTATATTGAAGGCACTTTTTTGAATAAACGCC
* * *
6832360 TTTCATAACCATCATGGTATATTGAAGGCATTTCATAATAAAAGATGCCTTTAATAATCCAAAAA
453 TTCCATAACCATCATGGTATATTGAAGGCATTTCATAATAAAAGACGCCTTTAATAATCAAAAAA
** * *
6832425 TTTTTTTAAGAAAATTATTGAAGGTGTTGTTATCTGCAACCGCCTTCACTAATTATCTACAAATT
518 TTTTTTTAAGAAAATTATTGAAGGCATTGTTATCTACAACCGCCTTCACTAATTATCTACAAACT
* **
6832490 GTGATAGGAATTATTAAAGGTGTCTTTCTTGGATATACGCCTTCAATAACCGTGTTAAAATTTGT
583 ATGATAGGAATTATTAAAGGCATCTTTCTTGGATATACGCCTTCAATAACCGTGTTAAAATTTGT
6832555 GTGGCG
648 GTGGCG
6832561 ATATGTTCAA
Statistics
Matches: 589, Mismatches: 58, Indels: 11
0.90 0.09 0.02
Matches are distributed among these distances:
710 75 0.13
711 370 0.63
712 144 0.24
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36
Consensus pattern (712 bp):
AGAAAATTATTGAAGGCATTGTTATTAACAAACACCTTCAGTAATGGATTACTAAGTTTAAAGAT
ATATTAAAGGCGCTTTTTTGAATAAACACCTTCCATAACCATCGTGGTATATTGAAGGCGTTTTA
TAATAAAAGACGCCTTTAATAATCTAAAAAAAAACTTTTAAAAAAATTATTAAAGGCGTTGTTAT
CTGCAACCGCATTCACTAATAATCTACAAACTGTGATAGAAATTATTAAAAGCATCTTTCTTGAA
TATACGCCTTCAATAACCATGTTAAAATTTATGTGGCGGTATATAAAAGGCATTTTACAGTAGAA
GACACCTTTAATAATTCCCAAAATGTTTAGTGAGAAAATTTTGAAGGCGTCTATTATTAACAAAC
ACCTTCAGTAATAGATTACTAAGTTTAAACGTATATTGAAGGCACTTTTTTGAATAAACGCCTTC
CATAACCATCATGGTATATTGAAGGCATTTCATAATAAAAGACGCCTTTAATAATCAAAAAATTT
TTTTAAGAAAATTATTGAAGGCATTGTTATCTACAACCGCCTTCACTAATTATCTACAAACTATG
ATAGGAATTATTAAAGGCATCTTTCTTGGATATACGCCTTCAATAACCGTGTTAAAATTTGTGTG
GCGGTATATAAAAGGTATTTTACAGTAGAAGATGCCTTTAATAATTTCAAAAATTTTTGGTG
Found at i:6834169 original size:2 final size:2
Alignment explanation
Indices: 6834162--6834196 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
6834152 GCTCTGGTAA
* *
6834162 AT AT AT AT AT AT AT AT AT TT AT AT TT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6834197 GGAATTATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
AT
Found at i:6857177 original size:29 final size:30
Alignment explanation
Indices: 6857015--6857413 Score: 335
Period size: 30 Copynumber: 13.9 Consensus size: 30
6857005 ATTTTTTTTT
*
6857015 ATTTTAAGGTTT-GAGG-TTTAGGGTTTTG
1 ATTTTAAGGTTTGGAGGATTTAGGGTTTAG
*
6857043 ATTTTAGGGTTT-GAGG-TTT-GGAGTTTCA-
1 ATTTTAAGGTTTGGAGGATTTAGG-GTTT-AG
* * *
6857071 ATTTTAGGGTTTGGAGGTTTTAGGGTTTTG
1 ATTTTAAGGTTTGGAGGATTTAGGGTTTAG
* * *
6857101 ATTTTAGGGTTTAGAGGATTTAGGGTTTTG
1 ATTTTAAGGTTTGGAGGATTTAGGGTTTAG
* *
6857131 ATTTTAAGGTTTGAAGGATTTAAGGTTTAG
1 ATTTTAAGGTTTGGAGGATTTAGGGTTTAG
* *
6857161 -TTTTATGGTTTGGAGGATTTAGGGTTTTG
1 ATTTTAAGGTTTGGAGGATTTAGGGTTTAG
* *
6857190 ATTTTAAGGTTTGAAGGATTTAAGGTTTAG
1 ATTTTAAGGTTTGGAGGATTTAGGGTTTAG
*
6857220 -TTTTATGGTTTGGAGGATTTAGGGTTTAG
1 ATTTTAAGGTTTGGAGGATTTAGGGTTTAG
* *
6857249 -------GGTTT--AGG-GTTAGGGCTTAG
1 ATTTTAAGGTTTGGAGGATTTAGGGTTTAG
* ** *
6857269 TTTTAGAG-TTTGGAGGATTTAGGGTTTTG
1 ATTTTAAGGTTTGGAGGATTTAGGGTTTAG
* *
6857298 ATTTT-AGAGTTTAGAAGG-TTTAGGGTTTTG
1 ATTTTAAG-GTTT-GGAGGATTTAGGGTTTAG
6857328 ATTTTAAGGTTTGGAAGG-TTTAGGGTTTAG
1 ATTTTAAGGTTTGG-AGGATTTAGGGTTTAG
* *
6857358 -TTTTAGGGTTTGAAGGATTTAGGGTTTAG
1 ATTTTAAGGTTTGGAGGATTTAGGGTTTAG
*
6857387 ATTTTAAGG-TTAGA-GAGTTTAGGGTTT
1 ATTTTAAGGTTTGGAGGA-TTTAGGGTTT
6857414 TAGTTTAAAA
Statistics
Matches: 310, Mismatches: 36, Indels: 49
0.78 0.09 0.12
Matches are distributed among these distances:
20 10 0.03
21 3 0.01
23 5 0.02
26 3 0.01
27 3 0.01
28 44 0.14
29 104 0.34
30 130 0.42
31 8 0.03
ACGTcount: A:0.21, C:0.01, G:0.33, T:0.46
Consensus pattern (30 bp):
ATTTTAAGGTTTGGAGGATTTAGGGTTTAG
Found at i:6857179 original size:59 final size:59
Alignment explanation
Indices: 6857010--6857414 Score: 377
Period size: 59 Copynumber: 7.1 Consensus size: 59
6857000 TTAAGATTTT
* * *
6857010 TTTTTATTTTAAGGTTTG-AGGTTTAGGGTTTTGATTTTAGGGTTT-GAGG-TTT-GGAG
1 TTTTGATTTTAAGGTTTGAAGGTTTAGGGTTTAGATTTTAAGGTTTGGAGGATTTAGG-G
** * * * * *
6857066 TTTCAATTTTAGGGTTTGGAGGTTTTAGGGTTTTGATTTTAGGGTTTAGAGGATTTAGGG
1 TTTTGATTTTAAGGTTTGAAGG-TTTAGGGTTTAGATTTTAAGGTTTGGAGGATTTAGGG
* *
6857126 TTTTGATTTTAAGGTTTGAAGGATTTAAGGTTTAG-TTTTATGGTTTGGAGGATTTAGGG
1 TTTTGATTTTAAGGTTTGAAGG-TTTAGGGTTTAGATTTTAAGGTTTGGAGGATTTAGGG
* *
6857185 TTTTGATTTTAAGGTTTGAAGGATTTAAGGTTTAG-TTTTATGGTTTGGAGGATTTA-GG
1 TTTTGATTTTAAGGTTTGAAGG-TTTAGGGTTTAGATTTTAAGGTTTGGAGGATTTAGGG
* * *
6857243 ----G--TTTAGGGTTT--AGGGTTAGGGCTTAG-TTTT-AGAGTTTGGAGGATTTAGGG
1 TTTTGATTTTAAGGTTTGAAGGTTTAGGGTTTAGATTTTAAG-GTTTGGAGGATTTAGGG
*
6857293 TTTTGATTTT-AGAGTTTAGAAGGTTTAGGGTTTTGATTTTAAGGTTTGGAAGG-TTTAGGG
1 TTTTGATTTTAAG-GTTT-GAAGGTTTAGGGTTTAGATTTTAAGGTTTGG-AGGATTTAGGG
* * *
6857353 TTTAG-TTTTAGGGTTTGAAGGATTTAGGGTTTAGATTTTAAGG-TTAGA-GAGTTTAGGG
1 TTTTGATTTTAAGGTTTGAAGG-TTTAGGGTTTAGATTTTAAGGTTTGGAGGA-TTTAGGG
6857411 TTTT
1 TTTT
6857415 AGTTTAAAAA
Statistics
Matches: 299, Mismatches: 26, Indels: 46
0.81 0.07 0.12
Matches are distributed among these distances:
48 1 0.00
49 27 0.09
50 5 0.02
52 9 0.03
54 2 0.01
55 1 0.00
56 23 0.08
57 4 0.01
58 44 0.15
59 122 0.41
60 54 0.18
61 7 0.02
ACGTcount: A:0.20, C:0.00, G:0.32, T:0.47
Consensus pattern (59 bp):
TTTTGATTTTAAGGTTTGAAGGTTTAGGGTTTAGATTTTAAGGTTTGGAGGATTTAGGG
Found at i:6857249 original size:7 final size:7
Alignment explanation
Indices: 6857237--6857413 Score: 74
Period size: 7 Copynumber: 24.4 Consensus size: 7
6857227 GTTTGGAGGA
6857237 TTTAGGG
1 TTTAGGG
6857244 TTTAGGG
1 TTTAGGG
6857251 TTTAGGG
1 TTTAGGG
6857258 -TTAGGG
1 TTTAGGG
* *
6857264 CTTA-GT
1 TTTAGGG
*
6857270 TTTAGAG
1 TTTAGGG
*
6857277 TTTGGAGGA
1 TTT--AGGG
6857286 TTTAGGG
1 TTTAGGG
* **
6857293 TTTTGAT
1 TTTAGGG
*
6857300 TTTAGAG
1 TTTAGGG
6857307 TTTAGAAGG
1 TTTAG--GG
6857316 TTTAGGG
1 TTTAGGG
* **
6857323 TTTTGAT
1 TTTAGGG
*
6857330 TTTAAGG
1 TTTAGGG
*
6857337 TTTGGAAGG
1 TTT--AGGG
6857346 TTTAGGG
1 TTTAGGG
*
6857353 TTTA-GT
1 TTTAGGG
6857359 TTTAGGG
1 TTTAGGG
*
6857366 TTTGAAGGA
1 TTT--AGGG
6857375 TTTAGGG
1 TTTAGGG
**
6857382 TTTAGAT
1 TTTAGGG
*
6857389 TTTAAGG
1 TTTAGGG
6857396 -TTAGAGAG
1 TTTAG-G-G
6857404 TTTAGGG
1 TTTAGGG
6857411 TTT
1 TTT
6857414 TAGTTTAAAA
Statistics
Matches: 125, Mismatches: 31, Indels: 28
0.68 0.17 0.15
Matches are distributed among these distances:
6 18 0.14
7 77 0.62
8 2 0.02
9 28 0.22
ACGTcount: A:0.21, C:0.01, G:0.34, T:0.45
Consensus pattern (7 bp):
TTTAGGG
Found at i:6857263 original size:13 final size:14
Alignment explanation
Indices: 6857073--6857413 Score: 82
Period size: 16 Copynumber: 23.2 Consensus size: 14
6857063 GAGTTTCAAT
*
6857073 TTTAGGGTTTGGAGGT
1 TTTAGGGTTT--AGGG
* **
6857089 TTTAGGGTTTTGAT
1 TTTAGGGTTTAGGG
6857103 TTTAGGGTTTAGAGG
1 TTTAGGGTTTAG-GG
* **
6857118 ATTTAGGGTTTTGAT
1 -TTTAGGGTTTAGGG
* *
6857133 TTTAAGGTTTGAAGGA
1 TTTAGGGTTT--AGGG
* *
6857149 TTTAAGGTTTA-GT
1 TTTAGGGTTTAGGG
* *
6857162 TTTATGGTTTGGAGGA
1 TTTAGGGTTT--AGGG
* **
6857178 TTTAGGGTTTTGAT
1 TTTAGGGTTTAGGG
* *
6857192 TTTAAGGTTTGAAGGA
1 TTTAGGGTTT--AGGG
* *
6857208 TTTAAGGTTTA-GT
1 TTTAGGGTTTAGGG
* *
6857221 TTTATGGTTTGGAGGA
1 TTTAGGGTTT--AGGG
6857237 TTTAGGGTTTAGGG
1 TTTAGGGTTTAGGG
6857251 TTTAGGG-TTAGGG
1 TTTAGGGTTTAGGG
* * *
6857264 CTTA-GTTTTAGAG
1 TTTAGGGTTTAGGG
*
6857277 TTTGGAGGATTTAGGG
1 TTT--AGGGTTTAGGG
* ** *
6857293 TTTTGATTTTAGAG
1 TTTAGGGTTTAGGG
6857307 TTTAGAAGGTTTAGGG
1 TTTAG--GGTTTAGGG
* ** *
6857323 TTTTGATTTTAAGG
1 TTTAGGGTTTAGGG
*
6857337 TTTGGAAGGTTTAGGG
1 TTT--AGGGTTTAGGG
*
6857353 TTTA-GTTTTAGGG
1 TTTAGGGTTTAGGG
*
6857366 TTTGAAGGATTTAGGG
1 TTT--AGGGTTTAGGG
** *
6857382 TTTAGATTTTAAGG
1 TTTAGGGTTTAGGG
6857396 -TTAGAGAGTTTAGGG
1 TTTAG-G-GTTTAGGG
6857411 TTT
1 TTT
6857414 TAGTTTAAAA
Statistics
Matches: 240, Mismatches: 59, Indels: 52
0.68 0.17 0.15
Matches are distributed among these distances:
12 1 0.00
13 51 0.21
14 73 0.30
15 10 0.04
16 105 0.44
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.46
Consensus pattern (14 bp):
TTTAGGGTTTAGGG
Found at i:6857288 original size:108 final size:108
Alignment explanation
Indices: 6857157--6857367 Score: 306
Period size: 108 Copynumber: 2.0 Consensus size: 108
6857147 GATTTAAGGT
6857157 TTAGTTTTATGGTTTGGAGGATTTAGGGTTTTGATTTTA-AGGTTT-GAAGGATTTAAGGTTTAG
1 TTAGTTTTATGGTTTGGAGGATTTAGGGTTTTGATTTTAGA-GTTTAGAAGG-TTTAAGGTTTAG
*
6857220 -TTTTATGGTTTGG-AGGATTTAGGGTTTAGGGTTTAGGGTTAGGGC
64 ATTTTAAGGTTTGGAAGG-TTTAGGGTTTA-GGTTTAGGGTTAGGGC
* *
6857265 TTAGTTTTA-GAGTTTGGAGGATTTAGGGTTTTGATTTTAGAGTTTAGAAGGTTTAGGGTTTTGA
1 TTAGTTTTATG-GTTTGGAGGATTTAGGGTTTTGATTTTAGAGTTTAGAAGGTTTAAGGTTTAGA
*
6857329 TTTTAAGGTTTGGAAGGTTTAGGGTTTAGTTTTAGGGTT
65 TTTTAAGGTTTGGAAGGTTTAGGGTTTAGGTTTAGGGTT
6857368 TGAAGGATTT
Statistics
Matches: 94, Mismatches: 4, Indels: 10
0.87 0.04 0.09
Matches are distributed among these distances:
107 1 0.01
108 61 0.65
109 29 0.31
110 3 0.03
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.46
Consensus pattern (108 bp):
TTAGTTTTATGGTTTGGAGGATTTAGGGTTTTGATTTTAGAGTTTAGAAGGTTTAAGGTTTAGAT
TTTAAGGTTTGGAAGGTTTAGGGTTTAGGTTTAGGGTTAGGGC
Found at i:6857541 original size:3 final size:3
Alignment explanation
Indices: 6857535--6857586 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
6857525 TTATGAACAT
6857535 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
6857583 TTA T
1 TTA T
6857587 AGATTTCTTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:6857760 original size:16 final size:14
Alignment explanation
Indices: 6857738--6857782 Score: 54
Period size: 16 Copynumber: 3.0 Consensus size: 14
6857728 TTTTTAAGCA
6857738 TTTTTTAGTTATTAT
1 TTTTTTA-TTATTAT
6857753 TCTTTTTATTTATTAT
1 T-TTTTTA-TTATTAT
*
6857769 TTATTTATTATTAT
1 TTTTTTATTATTAT
6857783 AAATTATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
14 7 0.26
15 6 0.22
16 14 0.52
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (14 bp):
TTTTTTATTATTAT
Found at i:6857791 original size:13 final size:13
Alignment explanation
Indices: 6857773--6857798 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6857763 TATTATTTAT
6857773 TTATTATTATAAA
1 TTATTATTATAAA
6857786 TTATTATTATAAA
1 TTATTATTATAAA
6857799 ATAATAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TTATTATTATAAA
Found at i:6858567 original size:18 final size:16
Alignment explanation
Indices: 6858540--6858579 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 16
6858530 TTTGTTTTTC
6858540 TTTTTGTTGTGGCTGATT
1 TTTTTGTTGTGG-TG-TT
*
6858558 TTTTTTTTGTGGTGTT
1 TTTTTGTTGTGGTGTT
6858574 TTTTTG
1 TTTTTG
6858580 GTAGGTAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 7 0.35
17 2 0.10
18 11 0.55
ACGTcount: A:0.03, C:0.03, G:0.25, T:0.70
Consensus pattern (16 bp):
TTTTTGTTGTGGTGTT
Found at i:6866351 original size:2 final size:2
Alignment explanation
Indices: 6866344--6866380 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
6866334 TTTTGTATAA
6866344 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
6866381 AAGAAGATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:6874821 original size:18 final size:19
Alignment explanation
Indices: 6874773--6874823 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
6874763 CGATCTAAAA
6874773 TTAATA-AAATATTATTTT
1 TTAATATAAATATTATTTT
6874791 TTAAATATAAAATATTA-TTT
1 TT-AATAT-AAATATTATTTT
6874811 TTAATATAAATAT
1 TTAATATAAATAT
6874824 AAAATTAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
18 8 0.27
19 9 0.30
20 5 0.17
21 8 0.27
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TTAATATAAATATTATTTT
Found at i:6874828 original size:25 final size:21
Alignment explanation
Indices: 6874776--6874820 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
6874766 TCTAAAATTA
6874776 ATAAAATATTATTTTTTAAAT
1 ATAAAATATTATTTTTTAAAT
6874797 ATAAAATATTA-TTTTT-AAT
1 ATAAAATATTATTTTTTAAAT
6874816 ATAAA
1 ATAAA
6874821 TATAAAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 8 0.33
20 5 0.21
21 11 0.46
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
ATAAAATATTATTTTTTAAAT
Found at i:6874867 original size:12 final size:13
Alignment explanation
Indices: 6874812--6874867 Score: 55
Period size: 12 Copynumber: 4.4 Consensus size: 13
6874802 ATATTATTTT
6874812 TAATATAAATATAA
1 TAAT-TAAATATAA
6874826 -AATTAAATATATA
1 TAATTAAATATA-A
* *
6874839 TAAATAAATACAA
1 TAATTAAATATAA
6874852 -AATTAAATA-AA
1 TAATTAAATATAA
6874863 TAATT
1 TAATT
6874868 TATATAAATC
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
11 2 0.06
12 20 0.56
13 5 0.14
14 9 0.25
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (13 bp):
TAATTAAATATAA
Found at i:6877016 original size:16 final size:16
Alignment explanation
Indices: 6876983--6877022 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
6876973 GCATATTATA
*
6876983 TTTTTTAGTTTCATTT
1 TTTTTTAGTTTCAGTT
*
6876999 TTTTTTAGTTTTAGTT
1 TTTTTTAGTTTCAGTT
6877015 TTATTTTA
1 TT-TTTTA
6877023 TTTATTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.15, C:0.03, G:0.07, T:0.75
Consensus pattern (16 bp):
TTTTTTAGTTTCAGTT
Found at i:6877088 original size:6 final size:6
Alignment explanation
Indices: 6877079--6877166 Score: 51
Period size: 6 Copynumber: 14.2 Consensus size: 6
6877069 CAATAATACC
* *
6877079 ATAAAA ATAAAA ATAAAC ATAAAA A-ATAAT ATAAAA ATCAACACA A-AATAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATA-AAA ATAAAA AT-AA-A-A ATAA-AA
6877130 AT-AAA ATAAAA ATCAAAA CA-AAAA ATTAAAA A-AAAA A
1 ATAAAA ATAAAA AT-AAAA -ATAAAA A-TAAAA ATAAAA A
6877167 GGGAAAACTT
Statistics
Matches: 66, Mismatches: 5, Indels: 23
0.70 0.05 0.24
Matches are distributed among these distances:
5 11 0.17
6 36 0.55
7 15 0.23
8 2 0.03
9 2 0.03
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.16
Consensus pattern (6 bp):
ATAAAA
Found at i:6877107 original size:19 final size:20
Alignment explanation
Indices: 6877062--6877103 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
6877052 GTAATAATAT
*
6877062 AAAATAACAATAATACCATA
1 AAAATAAAAATAATACCATA
6877082 AAAATAAAAATAA-A-CATA
1 AAAATAAAAATAATACCATA
6877100 AAAA
1 AAAA
6877104 ATAATATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.38
19 1 0.05
20 12 0.57
ACGTcount: A:0.74, C:0.10, G:0.00, T:0.17
Consensus pattern (20 bp):
AAAATAAAAATAATACCATA
Found at i:6877138 original size:26 final size:24
Alignment explanation
Indices: 6877082--6877166 Score: 100
Period size: 26 Copynumber: 3.4 Consensus size: 24
6877072 TAATACCATA
6877082 AAAATAAAAAT-AAACATAAAAAAT
1 AAAATAAAAATCAAACA-AAAAAAT
*
6877106 AATATAAAAATCAACACAAAATAAAT
1 AAAATAAAAATCAA-ACAAAA-AAAT
*
6877132 AAAATAAAAATCAAAACAAAAAATT
1 AAAATAAAAATC-AAACAAAAAAAT
*
6877157 AAAAAAAAAA
1 AAAATAAAAA
6877167 GGGAAAACTT
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
24 10 0.19
25 17 0.32
26 24 0.45
27 2 0.04
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (24 bp):
AAAATAAAAATCAAACAAAAAAAT
Found at i:6877146 original size:21 final size:20
Alignment explanation
Indices: 6877122--6877161 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
6877112 AAAATCAACA
*
6877122 CAAAATAAATAAAATAAAAAT
1 CAAAACAAA-AAAATAAAAAT
*
6877143 CAAAACAAAAAATTAAAAA
1 CAAAACAAAAAAATAAAAA
6877162 AAAAAGGGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (20 bp):
CAAAACAAAAAAATAAAAAT
Found at i:6878053 original size:3 final size:3
Alignment explanation
Indices: 6878045--6878082 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
6878035 TCTTCATCTT
*
6878045 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
6878083 TAAACAAAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:6879510 original size:2 final size:2
Alignment explanation
Indices: 6879503--6879527 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
6879493 ATTATGTATT
6879503 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
6879528 TAGAGTAGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6880307 original size:14 final size:14
Alignment explanation
Indices: 6880285--6880315 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
6880275 GTCTCAGAGC
6880285 AAATCTCTTGAATA
1 AAATCTCTTGAATA
*
6880299 AAATTTCTTGAATA
1 AAATCTCTTGAATA
6880313 AAA
1 AAA
6880316 AGACAATAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.35
Consensus pattern (14 bp):
AAATCTCTTGAATA
Found at i:6883899 original size:15 final size:15
Alignment explanation
Indices: 6883879--6883911 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
6883869 AAAAAAATAA
*
6883879 TTTTTTTTCTT-AAT
1 TTTTTTTTTTTCAAT
6883893 TTTTTTTTTTTCAAT
1 TTTTTTTTTTTCAAT
6883908 TTTT
1 TTTT
6883912 AAAAATATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTTTTTTTCAAT
Found at i:6885061 original size:13 final size:13
Alignment explanation
Indices: 6885043--6885067 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6885033 ATTTAATAGT
6885043 TTAAAAATAATAA
1 TTAAAAATAATAA
6885056 TTAAAAATAATA
1 TTAAAAATAATA
6885068 TATTCGAGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
TTAAAAATAATAA
Found at i:6894059 original size:30 final size:29
Alignment explanation
Indices: 6894023--6894095 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
6894013 AATTTTATTC
6894023 AATTAAAAATTTAATTGAGTTGAAATAAAA
1 AATTAAAAATTTAATTGA-TTGAAATAAAA
* ** *
6894053 AATTAAAAACTCGATTGATTGTAATAAAA
1 AATTAAAAATTTAATTGATTGAAATAAAA
*
6894082 TATTAAAAATTTAA
1 AATTAAAAATTTAA
6894096 ATTATTTTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
29 20 0.57
30 15 0.43
ACGTcount: A:0.55, C:0.03, G:0.08, T:0.34
Consensus pattern (29 bp):
AATTAAAAATTTAATTGATTGAAATAAAA
Found at i:6896207 original size:29 final size:29
Alignment explanation
Indices: 6896170--6896235 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
6896160 TATGAATAGT
**
6896170 TTTTAAAAAATAATTACTATAATATTTAAA
1 TTTT-AAAAATAATTAAAATAATATTTAAA
* *
6896200 TTTTAAAAATATTTAAAATAATATTTGAA
1 TTTTAAAAATAATTAAAATAATATTTAAA
*
6896229 TTATAAA
1 TTTTAAA
6896236 TTTATTAATT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
29 27 0.87
30 4 0.13
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (29 bp):
TTTTAAAAATAATTAAAATAATATTTAAA
Found at i:6896364 original size:19 final size:19
Alignment explanation
Indices: 6896317--6896364 Score: 55
Period size: 17 Copynumber: 2.6 Consensus size: 19
6896307 TTTAATAAAT
*
6896317 TTATAATTCAAATATCATA
1 TTATAATTTAAATATCATA
**
6896336 TTAT--TTTAAATATTTTA
1 TTATAATTTAAATATCATA
6896353 TTATAATTTAAA
1 TTATAATTTAAA
6896365 AATAATTTGC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 14 0.58
19 10 0.42
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (19 bp):
TTATAATTTAAATATCATA
Found at i:6896807 original size:2 final size:2
Alignment explanation
Indices: 6896800--6896837 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
6896790 AACTTGATTC
6896800 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
6896838 ATATATATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:6896842 original size:2 final size:2
Alignment explanation
Indices: 6896837--6896864 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6896827 TCTCTCTCTC
6896837 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6896865 AAAGGGGATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6897653 original size:2 final size:2
Alignment explanation
Indices: 6897646--6897671 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6897636 TGAGGTTTAA
6897646 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
6897672 CATTGCAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6898372 original size:22 final size:22
Alignment explanation
Indices: 6898347--6898396 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
6898337 TATATAATAT
6898347 TAAATAGAATAGACTAACAAAA
1 TAAATAGAATAGACTAACAAAA
* *
6898369 TAAATAGAATAGACTAATAGAA
1 TAAATAGAATAGACTAACAAAA
6898391 TAAATA
1 TAAATA
6898397 AAAATTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.62, C:0.06, G:0.10, T:0.22
Consensus pattern (22 bp):
TAAATAGAATAGACTAACAAAA
Found at i:6899927 original size:4 final size:4
Alignment explanation
Indices: 6899918--6899944 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
6899908 GGGTTTTATG
6899918 GATT GATT GATT GATT GATT GATT GAT
1 GATT GATT GATT GATT GATT GATT GAT
6899945 GCATCTACGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (4 bp):
GATT
Found at i:6909166 original size:2 final size:2
Alignment explanation
Indices: 6909159--6909191 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
6909149 AAGAGAAAGA
*
6909159 AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6909192 ATTGTTTAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:6909384 original size:15 final size:15
Alignment explanation
Indices: 6909364--6909397 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
6909354 TTTTAATTAA
6909364 ATTTAAAATCATATT
1 ATTTAAAATCATATT
*
6909379 ATTTAAAATTATATT
1 ATTTAAAATCATATT
6909394 ATTT
1 ATTT
6909398 TACAATATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (15 bp):
ATTTAAAATCATATT
Found at i:6910948 original size:20 final size:21
Alignment explanation
Indices: 6910923--6910971 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
6910913 CTACTTGAAA
6910923 TAATTTTAAAAT-TAAAAATT
1 TAATTTTAAAATATAAAAATT
*
6910943 TAATTTTAAGATATAAAAATT
1 TAATTTTAAAATATAAAAATT
*
6910964 TGATTTTA
1 TAATTTTA
6910972 TAAAAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (21 bp):
TAATTTTAAAATATAAAAATT
Found at i:6913318 original size:13 final size:12
Alignment explanation
Indices: 6913298--6913336 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 12
6913288 AAGTTAAGTT
6913298 TTTTATTTTTTA
1 TTTTATTTTTTA
6913310 TTTTAATTTTTTA
1 TTTT-ATTTTTTA
6913323 TACTTTATTTTTTA
1 T--TTTATTTTTTA
6913337 AATTAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.17
13 9 0.38
14 8 0.33
15 3 0.12
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTATTTTTTA
Found at i:6913321 original size:20 final size:21
Alignment explanation
Indices: 6913291--6913333 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
6913281 TCTTTAAAAG
**
6913291 TTAAGTTTTTTATTTTTTATT
1 TTAAGTTTTTTATACTTTATT
6913312 TTAA-TTTTTTATACTTTATT
1 TTAAGTTTTTTATACTTTATT
6913332 TT
1 TT
6913334 TTAAATTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (21 bp):
TTAAGTTTTTTATACTTTATT
Found at i:6918502 original size:32 final size:33
Alignment explanation
Indices: 6918460--6918528 Score: 95
Period size: 32 Copynumber: 2.1 Consensus size: 33
6918450 TTTTATTTGA
***
6918460 TTAATAATTATTAATTTTTAAAAATTATTATAT
1 TTAATAATTATTAAAAATTAAAAATTATTATAT
*
6918493 TTAAT-ATTATTAAAAATTAAAAATTATTTTAT
1 TTAATAATTATTAAAAATTAAAAATTATTATAT
6918525 TTAA
1 TTAA
6918529 AAAATACGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 27 0.84
33 5 0.16
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (33 bp):
TTAATAATTATTAAAAATTAAAAATTATTATAT
Found at i:6918670 original size:31 final size:32
Alignment explanation
Indices: 6918600--6918671 Score: 76
Period size: 31 Copynumber: 2.2 Consensus size: 32
6918590 TTAAAGATAA
* *
6918600 TAATATATAAAATATTAGTAATATTTATTTATT
1 TAATA-ATAAAATATTAGTAATATTTATTAAAT
* *
6918633 TTATAATAAAATATTATTTAA-A-TTATTAAAT
1 TAATAATAAAATATTA-GTAATATTTATTAAAT
6918664 TAATAATA
1 TAATAATA
6918672 TATTTATTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
31 14 0.42
32 12 0.36
33 7 0.21
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (32 bp):
TAATAATAAAATATTAGTAATATTTATTAAAT
Found at i:6918876 original size:15 final size:15
Alignment explanation
Indices: 6918856--6918888 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
6918846 TTAATTTAAA
6918856 AATATAAA-AATTTAT
1 AATATAAATAA-TTAT
6918871 AATATAAATAATTAT
1 AATATAAATAATTAT
6918886 AAT
1 AAT
6918889 TTTAAGAGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 15 0.88
16 2 0.12
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
AATATAAATAATTAT
Found at i:6923152 original size:3 final size:3
Alignment explanation
Indices: 6923144--6923170 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
6923134 TTTTGGATTG
6923144 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
6923171 CATTTGTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:6929008 original size:19 final size:21
Alignment explanation
Indices: 6928984--6929027 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
6928974 GCAATGATCT
*
6928984 TTTTGA-AGAAATGAAGT-GA
1 TTTTGAGAGAAATAAAGTCGA
*
6929003 TTTTGAGGGAAATAAAGTCGA
1 TTTTGAGAGAAATAAAGTCGA
6929024 TTTT
1 TTTT
6929028 TGAACTGGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 6 0.29
20 9 0.43
21 6 0.29
ACGTcount: A:0.36, C:0.02, G:0.25, T:0.36
Consensus pattern (21 bp):
TTTTGAGAGAAATAAAGTCGA
Done.