Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 41 of 117
Found at i:7495675 original size:17 final size:17
Alignment explanation
Indices: 7495649--7495686 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
7495639 TTTAATTTAA
7495649 AATAAAAAAAATTATT-T
1 AATAAAAAAAA-TATTCT
*
7495666 AATAACAAAAATATTCT
1 AATAAAAAAAATATTCT
7495683 AATA
1 AATA
7495687 CCTTGGTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (17 bp):
AATAAAAAAAATATTCT
Found at i:7496176 original size:21 final size:23
Alignment explanation
Indices: 7496118--7496179 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 23
7496108 GGGTGGTAAT
*
7496118 ATTAAAAATAATAATGAATGTGAG
1 ATTAAAATTAATAAT-AATGTGAG
*
7496142 ATTAATTATT-ATAATAATGT-A-
1 ATTAA-AATTAATAATAATGTGAG
7496163 ATTAAAATTAATAATAA
1 ATTAAAATTAATAATAA
7496180 AATATATATT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
20 3 0.09
21 12 0.36
22 1 0.03
23 5 0.15
24 10 0.30
25 2 0.06
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.37
Consensus pattern (23 bp):
ATTAAAATTAATAATAATGTGAG
Found at i:7496482 original size:39 final size:41
Alignment explanation
Indices: 7496413--7496489 Score: 106
Period size: 39 Copynumber: 1.9 Consensus size: 41
7496403 TAATTATTAT
7496413 ATTAAATTAATAAAAATATTTTATAATTTTTAA-ATAAAAA
1 ATTAAATTAATAAAAATATTTTATAATTTTTAATATAAAAA
* *
7496453 ATTAAATT-ATAAAAATATTATTGT-CTTTTTAATATAA
1 ATTAAATTAATAAAAATATT-TTATAATTTTTAATATAA
7496490 TACAAATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
39 18 0.55
40 15 0.45
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (41 bp):
ATTAAATTAATAAAAATATTTTATAATTTTTAATATAAAAA
Found at i:7497100 original size:16 final size:16
Alignment explanation
Indices: 7497057--7497101 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
7497047 TAAGTATTAT
7497057 ATTTTAAATA-TTAAA
1 ATTTTAAATATTTAAA
*
7497072 ATTTTGAAGTATTTAAA
1 ATTTT-AAATATTTAAA
*
7497089 ATTTTAATTATTT
1 ATTTTAAATATTT
7497102 TAATATAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 5 0.19
16 11 0.42
17 10 0.38
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.53
Consensus pattern (16 bp):
ATTTTAAATATTTAAA
Found at i:7497628 original size:2 final size:2
Alignment explanation
Indices: 7497621--7497659 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
7497611 GTTTGATTGA
7497621 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7497660 AAAACTAAGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7499401 original size:25 final size:25
Alignment explanation
Indices: 7499373--7499424 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
7499363 GAGAAATAAG
* * * *
7499373 AAAAGATAAATAGGTAAAAAAGTTA
1 AAAAAATAAATGGATAAAAAAATTA
7499398 AAAAAATAAATGGATAAAAAAATTA
1 AAAAAATAAATGGATAAAAAAATTA
7499423 AA
1 AA
7499425 TGTTTTTTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.12, T:0.19
Consensus pattern (25 bp):
AAAAAATAAATGGATAAAAAAATTA
Found at i:7499791 original size:20 final size:20
Alignment explanation
Indices: 7499768--7499812 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
7499758 AAACGTCATC
7499768 TTTATAATACAAGATGAGTT
1 TTTATAATACAAGATGAGTT
**
7499788 TTTATTTTACAAGATGAGTT
1 TTTATAATACAAGATGAGTT
7499808 TTTAT
1 TTTAT
7499813 TTTATTAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.04, G:0.13, T:0.49
Consensus pattern (20 bp):
TTTATAATACAAGATGAGTT
Found at i:7499813 original size:20 final size:20
Alignment explanation
Indices: 7499775--7499816 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
7499765 ATCTTTATAA
7499775 TACAAGATGAGTTTTTATTT
1 TACAAGATGAGTTTTTATTT
7499795 TACAAGATGAGTTTTTATTT
1 TACAAGATGAGTTTTTATTT
7499815 TA
1 TA
7499817 TTAATTTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.05, G:0.14, T:0.50
Consensus pattern (20 bp):
TACAAGATGAGTTTTTATTT
Found at i:7499862 original size:23 final size:22
Alignment explanation
Indices: 7499815--7499858 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7499805 GTTTTTATTT
*
7499815 TATTAATTTTTGTATTCATAAA
1 TATTAATTTTTGTATTAATAAA
7499837 TATTATATTTTT-TATTAATAAA
1 TATTA-ATTTTTGTATTAATAAA
7499859 ATATCATCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (22 bp):
TATTAATTTTTGTATTAATAAA
Found at i:7500320 original size:15 final size:16
Alignment explanation
Indices: 7500295--7500324 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7500285 AGTTTAATAG
7500295 AATGTTATATATTTTT
1 AATGTTATATATTTTT
7500311 AATG-TATATATTTT
1 AATGTTATATATTTT
7500325 AAAATAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (16 bp):
AATGTTATATATTTTT
Found at i:7500347 original size:13 final size:13
Alignment explanation
Indices: 7500329--7500353 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7500319 TATTTTAAAA
7500329 TAAAAAAATTAAT
1 TAAAAAAATTAAT
7500342 TAAAAAAATTAA
1 TAAAAAAATTAA
7500354 AACGTTTATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
TAAAAAAATTAAT
Found at i:7501734 original size:129 final size:124
Alignment explanation
Indices: 7501448--7501901 Score: 529
Period size: 123 Copynumber: 3.6 Consensus size: 124
7501438 CATGGAGGTT
* * * * * *
7501448 TCAGTAACACCATCACCATCATCAACAGCAACAGCCCCAGCCCTGATCCTATCGAGTTATGGCAA
1 TCAGCAACACCATCACCATCATCTACAGCAACAGCCCCAGCTCTGATCCTATCAAATTCTGGCAA
* * ** * *
7501513 GCGTATTGATAGGATGGGCAGTAGCCTCACCAGTT-GCAGTTCCGGTATCACAGAATAC
66 GCGAATTGACAGGATGTCCAGTAGCCTCACCAGTTAGCAGTTCTGGTATCACAGAACAC
* * * ** * *
7501571 TCAGCAACACCATCTCCCTCCTCTACAGCAATGGCCCCAGCTCTGATCCTTTCTAATTCTGGCAA
1 TCAGCAACACCATCACCATCATCTACAGCAACAGCCCCAGCTCTGATCCTATCAAATTCTGGCAA
*
7501636 GCGGATTGACAGGATGTCCAGTAGCCTCACCAGTTCCAGTTCCAGTTCTGGTATCACAGAACAC
66 GCGAATTGACAGGATGTCCAGTAGCCTCACCAGTT--AG---CAGTTCTGGTATCACAGAACAC
* * ** *
7501700 TCAGCAACACCATCACCCTCGTCTACAGCAATGGCCCCAGCTCTGGTCCTATCAAATTCTGGCAA
1 TCAGCAACACCATCACCATCATCTACAGCAACAGCCCCAGCTCTGATCCTATCAAATTCTGGCAA
* *
7501765 GCGAATTGACAGGATGTCCAGTAGCCTCACCAGTTA-CAGTACTGGTA-CTGCAGAAC-C
66 GCGAATTGACAGGATGTCCAGTAGCCTCACCAGTTAGCAGTTCTGGTATC-ACAGAACAC
* * *
7501822 GTCAGCAACACCTTCTCCATCATCTACAGCAACAGCCCCAGCTCTGGTCCTATCAAATTCTGGCA
1 -TCAGCAACACCATCACCATCATCTACAGCAACAGCCCCAGCTCTGATCCTATCAAATTCTGGCA
*
7501887 AGCGCATTGATCAGG
65 AGCGAATTGA-CAGG
7501902 CTGGCAAAAA
Statistics
Matches: 289, Mismatches: 33, Indels: 17
0.85 0.10 0.05
Matches are distributed among these distances:
122 2 0.01
123 167 0.58
124 4 0.01
126 1 0.00
127 1 0.00
129 114 0.39
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (124 bp):
TCAGCAACACCATCACCATCATCTACAGCAACAGCCCCAGCTCTGATCCTATCAAATTCTGGCAA
GCGAATTGACAGGATGTCCAGTAGCCTCACCAGTTAGCAGTTCTGGTATCACAGAACAC
Found at i:7502622 original size:19 final size:19
Alignment explanation
Indices: 7502598--7502635 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
7502588 TTCAATCTTC
7502598 AGGACAAACTATCATCATT
1 AGGACAAACTATCATCATT
7502617 AGGACAAACTATCATCATT
1 AGGACAAACTATCATCATT
7502636 TTTTTTGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (19 bp):
AGGACAAACTATCATCATT
Found at i:7506450 original size:17 final size:17
Alignment explanation
Indices: 7506430--7506464 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7506420 TAAAAGATTA
*
7506430 ATTTATGTTAAGAATTT
1 ATTTAGGTTAAGAATTT
*
7506447 ATTTAGGTTAAGTATTT
1 ATTTAGGTTAAGAATTT
7506464 A
1 A
7506465 CTTGGATACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.51
Consensus pattern (17 bp):
ATTTAGGTTAAGAATTT
Found at i:7507198 original size:17 final size:18
Alignment explanation
Indices: 7507164--7507200 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
7507154 TATATTTTTG
7507164 ATTTAGAGAAAAAGAATT
1 ATTTAGAGAAAAAGAATT
*
7507182 ATTTAGATAAAAA-AATT
1 ATTTAGAGAAAAAGAATT
7507199 AT
1 AT
7507201 ACATCAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.32
Consensus pattern (18 bp):
ATTTAGAGAAAAAGAATT
Found at i:7518029 original size:8 final size:8
Alignment explanation
Indices: 7518018--7518057 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
7518008 TTTTTATTTA
7518018 TATATATT
1 TATATATT
*
7518026 TATATAAT
1 TATATATT
7518034 TATATATT
1 TATATATT
*
7518042 TAAATATT
1 TATATATT
7518050 T-TATATT
1 TATATATT
7518057 T
1 T
7518058 TTAAAAAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
TATATATT
Found at i:7526852 original size:2 final size:2
Alignment explanation
Indices: 7526845--7526869 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7526835 CAAGAGTTGA
7526845 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7526870 ATAAGAGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7527185 original size:23 final size:22
Alignment explanation
Indices: 7527159--7527202 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
7527149 GTACCCATAA
7527159 TTTAGGAGATGTCATTATAAAAC
1 TTTAGGAGAT-TCATTATAAAAC
* * *
7527182 TTTATGATATTCATTTTAAAA
1 TTTAGGAGATTCATTATAAAA
7527203 GTCAATGGAG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.43
Consensus pattern (22 bp):
TTTAGGAGATTCATTATAAAAC
Found at i:7530469 original size:101 final size:100
Alignment explanation
Indices: 7530294--7530493 Score: 328
Period size: 101 Copynumber: 2.0 Consensus size: 100
7530284 GTGCTATAAA
* * *
7530294 AGTAAGCTATGTTATTCAGACTCGGGTTTGAGTGTCAATTATAGGTATGTTTCCGATATGGGTAT
1 AGTAAGCTATGTTATTCAGACTCAGGTGTGAGTGTCAATTATAGGTATGTTTCCGATACGGGTAT
* *
7530359 CTTCAATTTTTTTTTCCATGTTTTTCCCTATATTTC
66 CTTCAA-TTTTGTTTCCATGTTTTCCCCTATATTTC
*
7530395 AGTAAGCTATGTTATTCAGACTCAGGTGTGAGTGTCAATTATAGGTATGTTTCTGATACGGGTAT
1 AGTAAGCTATGTTATTCAGACTCAGGTGTGAGTGTCAATTATAGGTATGTTTCCGATACGGGTAT
*
7530460 CTTCGATTTTGTTTCCATGTTTTCCCCTATATTT
66 CTTCAATTTTGTTTCCATGTTTTCCCCTATATTT
7530494 AAAGGGTCAA
Statistics
Matches: 92, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
100 26 0.28
101 66 0.72
ACGTcount: A:0.21, C:0.15, G:0.19, T:0.45
Consensus pattern (100 bp):
AGTAAGCTATGTTATTCAGACTCAGGTGTGAGTGTCAATTATAGGTATGTTTCCGATACGGGTAT
CTTCAATTTTGTTTCCATGTTTTCCCCTATATTTC
Found at i:7531281 original size:30 final size:29
Alignment explanation
Indices: 7531205--7531282 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
7531195 TTTATCATTT
* *
7531205 TATTTAGATAAATTATTATATTTTTATTG
1 TATTTAAATAAATTTTTATATTTTTATTG
7531234 TATTTAAATAAGA-TTTTATATTTTTATT-
1 TATTTAAATAA-ATTTTTATATTTTTATTG
7531262 TATATTCAAATAAATTTTTAT
1 TAT-TT-AAATAAATTTTTAT
7531283 TTCAAATTAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
28 3 0.07
29 27 0.63
30 13 0.30
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.58
Consensus pattern (29 bp):
TATTTAAATAAATTTTTATATTTTTATTG
Found at i:7531450 original size:77 final size:77
Alignment explanation
Indices: 7531369--7531522 Score: 290
Period size: 77 Copynumber: 2.0 Consensus size: 77
7531359 TTAAAGTATT
* *
7531369 TGTGATCGTGAAAAATTGATGTTTTATATGTATTATGTATATGTTAAGATCTTATTTAAGCATAA
1 TGTGATCATGAAAAATTGATGTTTTATATGTATTATGTATATGTTAAGATCCTATTTAAGCATAA
7531434 ATTAAAAGTTAA
66 ATTAAAAGTTAA
7531446 TGTGATCATGAAAAATTGATGTTTTATATGTATTATGTATATGTTAAGATCCTATTTAAGCATAA
1 TGTGATCATGAAAAATTGATGTTTTATATGTATTATGTATATGTTAAGATCCTATTTAAGCATAA
7531511 ATTAAAAGTTAA
66 ATTAAAAGTTAA
7531523 GAGCTTATTT
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
77 75 1.00
ACGTcount: A:0.38, C:0.05, G:0.15, T:0.42
Consensus pattern (77 bp):
TGTGATCATGAAAAATTGATGTTTTATATGTATTATGTATATGTTAAGATCCTATTTAAGCATAA
ATTAAAAGTTAA
Found at i:7531585 original size:19 final size:20
Alignment explanation
Indices: 7531542--7531582 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
7531532 TGGATACAAA
*
7531542 TTAAAAGTTAAATGTTTATT
1 TTAAAAGTTAAATGCTTATT
**
7531562 TTAAAAGTTATGTGCTTATT
1 TTAAAAGTTAAATGCTTATT
7531582 T
1 T
7531583 AAATATAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.34, C:0.02, G:0.12, T:0.51
Consensus pattern (20 bp):
TTAAAAGTTAAATGCTTATT
Found at i:7531803 original size:23 final size:23
Alignment explanation
Indices: 7531759--7531805 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
7531749 AATTCACTGA
* **
7531759 TATTATATAAAATTTAAAATTTT
1 TATTATAAAAAATCCAAAATTTT
*
7531782 TATTATAAAAAATCCAACATTTT
1 TATTATAAAAAATCCAAAATTTT
7531805 T
1 T
7531806 GGTAGTTCTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (23 bp):
TATTATAAAAAATCCAAAATTTT
Found at i:7534309 original size:7 final size:7
Alignment explanation
Indices: 7534297--7534333 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
7534287 ATATTGAAAT
7534297 TAATTAA
1 TAATTAA
7534304 TAATT-A
1 TAATTAA
7534310 -AATATAA
1 TAAT-TAA
7534317 TAATTAA
1 TAATTAA
7534324 TAATTAA
1 TAATTAA
7534331 TAA
1 TAA
7534334 AAAACAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
5 3 0.11
6 2 0.07
7 19 0.70
8 3 0.11
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
TAATTAA
Found at i:7534312 original size:16 final size:15
Alignment explanation
Indices: 7534283--7534333 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 15
7534273 AATTCTATTT
7534283 ATTAAT-ATTGAAATTA
1 ATTAATAATT-AAA-TA
7534299 ATTAATAATTAAAT-
1 ATTAATAATTAAATA
7534313 A-TAATAATT-AATA
1 ATTAATAATTAAATA
7534326 ATTAATAA
1 ATTAATAA
7534334 AAAACAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.09
13 9 0.28
14 7 0.22
15 1 0.03
16 9 0.28
17 3 0.09
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (15 bp):
ATTAATAATTAAATA
Found at i:7535841 original size:3 final size:3
Alignment explanation
Indices: 7535835--7535878 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
7535825 GCATAATCAC
7535835 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7535879 GTTTTCATAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7536045 original size:29 final size:30
Alignment explanation
Indices: 7535999--7536056 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
7535989 TTAGCGTTTT
*
7535999 AAAAATTCAAAAAATTAAAA-CCAAAACCC
1 AAAAATTCAAAAAATTAAAATACAAAACCC
* **
7536028 AAAATTTCAAAACCTTAAAATACAAAACC
1 AAAAATTCAAAAAATTAAAATACAAAACC
7536057 TTAAAAATCT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 17 0.71
30 7 0.29
ACGTcount: A:0.62, C:0.21, G:0.00, T:0.17
Consensus pattern (30 bp):
AAAAATTCAAAAAATTAAAATACAAAACCC
Found at i:7536106 original size:29 final size:29
Alignment explanation
Indices: 7536013--7536115 Score: 102
Period size: 29 Copynumber: 3.5 Consensus size: 29
7536003 ATTCAAAAAA
* * *
7536013 TTAAAACCAAAACC-CAAAATTTCAAAACC
1 TTAAAATCAAAACCTTAAAATCT-AAAACC
7536042 TTAAAATACAAAACCTTAAAAATCTAAAACC
1 TTAAAAT-CAAAACCTT-AAAATCTAAAACC
* *
7536073 CTAAAATCCAAACTCTT-AAATCTAAAACC
1 TTAAAATCAAAAC-CTTAAAATCTAAAACC
*
7536102 TTAAAATCTAAACC
1 TTAAAATCAAAACC
7536116 CCAAAACCTT
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
28 1 0.02
29 29 0.46
30 12 0.19
31 15 0.24
32 6 0.10
ACGTcount: A:0.53, C:0.24, G:0.00, T:0.22
Consensus pattern (29 bp):
TTAAAATCAAAACCTTAAAATCTAAAACC
Found at i:7536121 original size:22 final size:23
Alignment explanation
Indices: 7536096--7536144 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
7536086 TCTTAAATCT
*
7536096 AAAACC-TTAAAATCTAAACCCC
1 AAAACCTTTAAAACCTAAACCCC
*
7536118 AAAACCTTTAAAACCTAAACCCT
1 AAAACCTTTAAAACCTAAACCCC
7536141 AAAA
1 AAAA
7536145 TCCAAAACCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 6 0.25
23 18 0.75
ACGTcount: A:0.53, C:0.29, G:0.00, T:0.18
Consensus pattern (23 bp):
AAAACCTTTAAAACCTAAACCCC
Found at i:7536273 original size:15 final size:15
Alignment explanation
Indices: 7536013--7536266 Score: 115
Period size: 15 Copynumber: 15.9 Consensus size: 15
7536003 ATTCAAAAAA
7536013 TTAAAA-CCAAAACC
1 TTAAAATCCAAAACC
* *
7536027 -CAAAATTTCAAAACC
1 TTAAAA-TCCAAAACC
*
7536042 TTAAAATACAAAACC
1 TTAAAATCCAAAACC
*
7536057 TTAAAAATCTAAAACC
1 TT-AAAATCCAAAACC
*
7536073 CTAAAATCC-AAACTC
1 TTAAAATCCAAAAC-C
*
7536088 TT-AAATCTAAAACC
1 TTAAAATCCAAAACC
7536102 TTAAAATCTAAACCCCAAAACC
1 TTAAAA--T-----CCAAAACC
*
7536124 TTTAAAA-CCTAAACC
1 -TTAAAATCCAAAACC
*
7536139 CTAAAATCCAAAACC
1 TTAAAATCCAAAACC
7536154 TTAAAAATCCAAAATCC
1 TT-AAAATCCAAAA-CC
* *
7536171 -AAAAATCTCAAAAAC
1 TTAAAATC-CAAAACC
* * * *
7536186 TTCAAAGCTAAAGCC
1 TTAAAATCCAAAACC
* *
7536201 CTAAGATCCAAAACC
1 TTAAAATCCAAAACC
*
7536216 TTAAAATTCAAAATCCCAACCC
1 TTAAAA-TC-CAA----AA-CC
*
7536238 TTAAAATCTAAAACC
1 TTAAAATCCAAAACC
7536253 TTAAAATCCAAAAC
1 TTAAAATCCAAAAC
7536267 TCTAAAAACC
Statistics
Matches: 179, Mismatches: 34, Indels: 53
0.67 0.13 0.20
Matches are distributed among these distances:
13 4 0.02
14 17 0.09
15 86 0.48
16 40 0.22
17 5 0.03
20 2 0.01
21 4 0.02
22 15 0.08
23 6 0.03
ACGTcount: A:0.52, C:0.26, G:0.01, T:0.20
Consensus pattern (15 bp):
TTAAAATCCAAAACC
Found at i:7537571 original size:28 final size:32
Alignment explanation
Indices: 7537540--7537604 Score: 75
Period size: 33 Copynumber: 2.1 Consensus size: 32
7537530 AATAAAATAA
*
7537540 ATTATATG-TTA-G-TTA-TTATTTTATTTTG
1 ATTATATGTTTATGATTATTTATGTTATTTTG
*
7537568 ATTATGTGTTTATGATTTATTTATGTTATTTTG
1 ATTATATGTTTATGA-TTATTTATGTTATTTTG
7537601 ATTA
1 ATTA
7537605 ATACATTACT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
28 7 0.23
29 3 0.10
30 1 0.03
32 3 0.10
33 16 0.53
ACGTcount: A:0.25, C:0.00, G:0.12, T:0.63
Consensus pattern (32 bp):
ATTATATGTTTATGATTATTTATGTTATTTTG
Found at i:7539709 original size:20 final size:20
Alignment explanation
Indices: 7539684--7539721 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7539674 TTTGTGTATT
*
7539684 CATTTATTTATTCATTCATC
1 CATTTATGTATTCATTCATC
*
7539704 CATTTATGTATTTATTCA
1 CATTTATGTATTCATTCA
7539722 ATATAATGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.16, G:0.03, T:0.55
Consensus pattern (20 bp):
CATTTATGTATTCATTCATC
Found at i:7541405 original size:21 final size:20
Alignment explanation
Indices: 7541362--7541406 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
7541352 GAAATGCCTT
*
7541362 AAAAAAACAAAGAAAAACCA
1 AAAAAAACAAAGAAAAAACA
* *
7541382 AAAAAAAGGAAAGAAAAAAGA
1 AAAAAAA-CAAAGAAAAAACA
7541403 AAAA
1 AAAA
7541407 GGAAAATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.82, C:0.07, G:0.11, T:0.00
Consensus pattern (20 bp):
AAAAAAACAAAGAAAAAACA
Found at i:7541954 original size:25 final size:25
Alignment explanation
Indices: 7541926--7541974 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
7541916 AGTTCAACCT
*
7541926 ATATAATAATTTTCTAATTCATTCC
1 ATATAATAATTCTCTAATTCATTCC
* * *
7541951 ATATGATCATTCTCTTATTCATTC
1 ATATAATAATTCTCTAATTCATTC
7541975 TACATGACCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.18, G:0.02, T:0.49
Consensus pattern (25 bp):
ATATAATAATTCTCTAATTCATTCC
Found at i:7541981 original size:25 final size:25
Alignment explanation
Indices: 7541942--7541991 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
7541932 TAATTTTCTA
* *
7541942 ATTCATTCCATATGATCATTCTCTT
1 ATTCATTCCACATGACCATTCTCTT
* *
7541967 ATTCATTCTACATGACCATTTTCTT
1 ATTCATTCCACATGACCATTCTCTT
7541992 TCATTAAGGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.04, T:0.48
Consensus pattern (25 bp):
ATTCATTCCACATGACCATTCTCTT
Found at i:7542592 original size:11 final size:11
Alignment explanation
Indices: 7542576--7542637 Score: 52
Period size: 11 Copynumber: 5.2 Consensus size: 11
7542566 GAAAAAATGC
7542576 AAAAGAAAAAA
1 AAAAGAAAAAA
7542587 AAAAGAAAATCAA
1 AAAAGAAAA--AA
* *
7542600 AGGAAAGGAAGAAT
1 A--AAA-GAAAAAA
*
7542614 AAAAGAAGAAA
1 AAAAGAAAAAA
7542625 AAAAGAAAAAA
1 AAAAGAAAAAA
7542636 AA
1 AA
7542638 TGAATGGATG
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
11 27 0.64
12 3 0.07
13 3 0.07
14 2 0.05
15 3 0.07
16 4 0.10
ACGTcount: A:0.79, C:0.02, G:0.16, T:0.03
Consensus pattern (11 bp):
AAAAGAAAAAA
Found at i:7544084 original size:66 final size:65
Alignment explanation
Indices: 7543946--7544165 Score: 218
Period size: 66 Copynumber: 3.4 Consensus size: 65
7543936 GCTGGCCTCT
* * * * * *
7543946 AATTTTAAGCCCAGTTTAGCTAGCCCTTAATGAAATTTAAGCCTAGTTTATTTGACCTTCAAAGA
1 AATTTTAAGCCCAGTTTATCTGGCCATTAATGAATTTTAAGCCTAGTTTATTAGCCCTTCAAAGA
* *
7544011 ACA-TTTAAGCCTAGTTTATCTGGCCATCAATGAAGTTTTAAGCCTAGTTTAGTTAGCCCTT-AT
1 A-ATTTTAAGCCCAGTTTATCTGGCCATTAATGAA-TTTTAAGCCTAGTTTA-TTAGCCCTTCA-
7544074 AA-A
62 AAGA
*
7544077 AATTTTAAGCCCAATTTATCTGGCCATTAATGAAATTTTAAG-CTCAGTTTATCTAGCCC--CAA
1 AATTTTAAGCCCAGTTTATCTGGCCATTAATG-AATTTTAAGCCT-AGTTTAT-TAGCCCTTCAA
7544139 ATGA
63 A-GA
** *
7544143 GGTTTTAAGCCAAGTTTATCTGG
1 AATTTTAAGCCCAGTTTATCTGG
7544166 TCCCAAAAGA
Statistics
Matches: 129, Mismatches: 15, Indels: 21
0.78 0.09 0.13
Matches are distributed among these distances:
64 2 0.02
65 32 0.25
66 84 0.65
67 11 0.09
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (65 bp):
AATTTTAAGCCCAGTTTATCTGGCCATTAATGAATTTTAAGCCTAGTTTATTAGCCCTTCAAAGA
Found at i:7544142 original size:33 final size:33
Alignment explanation
Indices: 7543946--7544234 Score: 141
Period size: 33 Copynumber: 8.8 Consensus size: 33
7543936 GCTGGCCTCT
* * **
7543946 AATTTTAAGCCCAGTTTAGCTAGCCCTTAATGA
1 AATTTTAAGCCTAGTTTATCTAGCCCCAAATGA
* *
7543979 AA-TTTAAGCCTAGTTTAT-TTGACCTTCAAA-GA
1 AATTTTAAGCCTAGTTTATCTAG-CC-CCAAATGA
* *
7544011 ACA-TTTAAGCCTAGTTTATCTGGCCATC-AATGA
1 A-ATTTTAAGCCTAGTTTATCTAGCC-CCAAATGA
* *
7544044 AGTTTTAAGCCTAGTTTAGT-TAGCCCTTATAA--A
1 AATTTTAAGCCTAGTTTA-TCTAGCCC-CA-AATGA
* * * ***
7544077 AATTTTAAGCCCAATTTATCTGGCCATTAATGA
1 AATTTTAAGCCTAGTTTATCTAGCCCCAAATGA
7544110 AATTTTAAG-CTCAGTTTATCTAGCCCCAAATGA
1 AATTTTAAGCCT-AGTTTATCTAGCCCCAAATGA
** * * * *
7544143 GGTTTTAAGCCAAGTTTATCTGGTCCCAAAAGA
1 AATTTTAAGCCTAGTTTATCTAGCCCCAAATGA
** * *
7544176 AGA-TTTAAGCCTAGCATAGCTGGCCCTCAAA-GTA
1 A-ATTTTAAGCCTAGTTTATCTAGCCC-CAAATG-A
** *
7544210 AGGTTTAATCCTAGTTTATCTAGCC
1 AATTTTAAGCCTAGTTTATCTAGCC
7544235 TTTAGTAAAT
Statistics
Matches: 194, Mismatches: 43, Indels: 37
0.71 0.16 0.14
Matches are distributed among these distances:
31 4 0.02
32 24 0.12
33 137 0.71
34 27 0.14
35 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (33 bp):
AATTTTAAGCCTAGTTTATCTAGCCCCAAATGA
Found at i:7544142 original size:99 final size:98
Alignment explanation
Indices: 7543948--7544160 Score: 229
Period size: 99 Copynumber: 2.2 Consensus size: 98
7543938 TGGCCTCTAA
* * * * *
7543948 TTTTAAGCCCAGTTTAGCTAGCCCTTAATGAAATTTAAGCCTAGTTTATTTGACCTTCAAAGAAC
1 TTTTAAGCCAAGTTTAGCTAGCCCTTAATAAAATTTAAGCCCAATTTATCTGACCTTCAAAGAAC
* *
7544013 ATTTAAGCCTAGTTTATCTGGCCATCAATGAAG
66 ATTTAAGCCTAGTTTATCTAGCCACCAATGAAG
* * * *
7544046 TTTTAAGCCTAGTTTAGTTAGCCCTT-ATAAAAATTTTAAGCCCAATTTATCTGGCCATT-AATG
1 TTTTAAGCCAAGTTTAGCTAGCCCTTAAT-AAAA-TTTAAGCCCAATTTATCTGACC-TTCAAAG
*
7544109 AA-ATTTTAAG-CTCAGTTTATCTAGCC-CCAAATGAGG
63 AACA-TTTAAGCCT-AGTTTATCTAGCCACC-AATGAAG
7544145 TTTTAAGCCAAGTTTA
1 TTTTAAGCCAAGTTTA
7544161 TCTGGTCCCA
Statistics
Matches: 97, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
97 2 0.02
98 31 0.32
99 62 0.64
100 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (98 bp):
TTTTAAGCCAAGTTTAGCTAGCCCTTAATAAAATTTAAGCCCAATTTATCTGACCTTCAAAGAAC
ATTTAAGCCTAGTTTATCTAGCCACCAATGAAG
Found at i:7544620 original size:35 final size:35
Alignment explanation
Indices: 7544535--7544630 Score: 95
Period size: 35 Copynumber: 2.7 Consensus size: 35
7544525 CGACTTGTAG
* * * *
7544535 TGTTGTCCTAATCGATTCTTTAATTTTGACTCACGG
1 TGTTGTCATAGTC-ATTCTTTATTTTTGACTCACGA
** *
7544571 TGTTGTCACGGTCATTCTTTATTTTTGACTCGCGA
1 TGTTGTCATAGTCATTCTTTATTTTTGACTCACGA
* *
7544606 TGTTGTCTTAGTCATT-TTTCTTTTT
1 TGTTGTCATAGTCATTCTTTATTTTT
7544631 TTTGACTTGC
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
34 8 0.16
35 32 0.65
36 9 0.18
ACGTcount: A:0.15, C:0.18, G:0.17, T:0.51
Consensus pattern (35 bp):
TGTTGTCATAGTCATTCTTTATTTTTGACTCACGA
Found at i:7544717 original size:34 final size:34
Alignment explanation
Indices: 7544664--7544775 Score: 111
Period size: 34 Copynumber: 3.3 Consensus size: 34
7544654 TTTTCGTTAA
*
7544664 TTTT-ACTTATGGTTCAATCCTGAACTTATTATT
1 TTTTAACTTGTGGTTCAATCCTGAACTTATTATT
* * * *
7544697 TTCTAACTTGTGGTTTAATCCT-AATTTTTTTATT
1 TTTTAACTTGTGGTTCAATCCTGAA-CTTATTATT
* * * *
7544731 TTTTGATTTGTGGTTCAATCCTGATCGTCATTATT
1 TTTTAACTTGTGGTTCAATCCTGAAC-TTATTATT
7544766 TTTTAACTTG
1 TTTTAACTTG
7544776 CAATTCAATC
Statistics
Matches: 60, Mismatches: 15, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
33 5 0.08
34 40 0.67
35 15 0.25
ACGTcount: A:0.21, C:0.13, G:0.12, T:0.54
Consensus pattern (34 bp):
TTTTAACTTGTGGTTCAATCCTGAACTTATTATT
Found at i:7544903 original size:34 final size:34
Alignment explanation
Indices: 7544814--7544903 Score: 99
Period size: 34 Copynumber: 2.6 Consensus size: 34
7544804 TGACCCGCGG
* **
7544814 TTTAATCCTGATCATCTTTATTTTTTGACTCGTGA
1 TTTAATCCTGATC-TCTTTATTTTTTAACTCGCCA
* * *
7544849 TTTAATCTTGATCTCGTTATTTTTTAACTTGCCA
1 TTTAATCCTGATCTCTTTATTTTTTAACTCGCCA
* *
7544883 TTTAATCCTAATCTTTTTATT
1 TTTAATCCTGATCTCTTTATT
7544904 CTCTGACTCA
Statistics
Matches: 45, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
34 33 0.73
35 12 0.27
ACGTcount: A:0.21, C:0.17, G:0.08, T:0.54
Consensus pattern (34 bp):
TTTAATCCTGATCTCTTTATTTTTTAACTCGCCA
Found at i:7545047 original size:10 final size:9
Alignment explanation
Indices: 7545021--7545055 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
7545011 TCACAGTAAT
7545021 AAAAAAAAC
1 AAAAAAAAC
*
7545030 AATAAAAAC
1 AAAAAAAAC
7545039 AAAACAAAAC
1 AAAA-AAAAC
7545049 AAAAAAA
1 AAAAAAA
7545056 TTTTGAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.86, C:0.11, G:0.00, T:0.03
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:7546734 original size:3 final size:3
Alignment explanation
Indices: 7546728--7546830 Score: 181
Period size: 3 Copynumber: 34.3 Consensus size: 3
7546718 AAAAAAAAGC
7546728 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
7546776 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-A ATTG ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA
7546821 ATA ATA ATA A
1 ATA ATA ATA A
7546831 GTTTTCATAA
Statistics
Matches: 96, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
2 2 0.02
3 93 0.97
4 1 0.01
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7547012 original size:15 final size:15
Alignment explanation
Indices: 7546994--7547064 Score: 56
Period size: 15 Copynumber: 4.7 Consensus size: 15
7546984 TTCAAAATCG
*
7546994 TAAAATCAAAAACCT
1 TAAAATCAAAAACCC
* *
7547009 TAAAAATCTAATACCC
1 T-AAAATCAAAAACCC
*
7547025 TAAAATC-CAAACCC
1 TAAAATCAAAAACCC
*
7547039 TTAAATTC-AAAACCC
1 -TAAAATCAAAAACCC
7547054 TAAAATTCAAA
1 TAAAA-TCAAA
7547065 CCCCAAAACC
Statistics
Matches: 44, Mismatches: 8, Indels: 7
0.75 0.14 0.12
Matches are distributed among these distances:
14 9 0.20
15 21 0.48
16 14 0.32
ACGTcount: A:0.54, C:0.24, G:0.00, T:0.23
Consensus pattern (15 bp):
TAAAATCAAAAACCC
Found at i:7547044 original size:14 final size:14
Alignment explanation
Indices: 7547011--7547072 Score: 61
Period size: 15 Copynumber: 4.3 Consensus size: 14
7547001 AAAAACCTTA
*
7547011 AAAATCTAATACCCT
1 AAAATCCAA-ACCCT
7547026 AAAATCCAAACCCTT
1 AAAATCCAAACCC-T
* *
7547041 AAATTCAAAACCCT
1 AAAATCCAAACCCT
* *
7547055 AAAATTCAAACCCC
1 AAAATCCAAACCCT
7547069 AAAA
1 AAAA
7547073 CCTTCAAAAC
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
14 19 0.49
15 20 0.51
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (14 bp):
AAAATCCAAACCCT
Found at i:7547054 original size:29 final size:30
Alignment explanation
Indices: 7546979--7547067 Score: 90
Period size: 31 Copynumber: 2.9 Consensus size: 30
7546969 ACCAAAACCC
* * * *
7546979 AAAATTTCAAAATCGTAAAATCAAAAACCTT
1 AAAA-TTCAAAACCCTAAAATCCAAACCCTT
* *
7547010 AAAAATCTAATACCCTAAAATCCAAACCCTT
1 AAAATTC-AAAACCCTAAAATCCAAACCCTT
*
7547041 -AAATTCAAAACCCTAAAATTCAAACCC
1 AAAATTCAAAACCCTAAAATCCAAACCC
7547068 CAAAACCTTC
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
29 19 0.40
30 7 0.15
31 22 0.46
ACGTcount: A:0.52, C:0.25, G:0.01, T:0.22
Consensus pattern (30 bp):
AAAATTCAAAACCCTAAAATCCAAACCCTT
Found at i:7547103 original size:31 final size:31
Alignment explanation
Indices: 7547068--7547153 Score: 93
Period size: 31 Copynumber: 2.7 Consensus size: 31
7547058 ATTCAAACCC
* * *
7547068 CAAAACCTTCAAAACCTAAACCCGAAAATTT
1 CAAAACCTTCAAAACCAAAACCCAAAAATCT
* *
7547099 CAAAACCTTAAAAATCCAAAATCCAAAAATCT
1 CAAAACCTTCAAAA-CCAAAACCCAAAAATCT
*
7547131 CAAAAACC-TCAAAGCCAAAACCC
1 C-AAAACCTTCAAAACCAAAACCC
7547154 TAATATCCAA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
31 21 0.47
32 18 0.40
33 6 0.13
ACGTcount: A:0.52, C:0.30, G:0.02, T:0.15
Consensus pattern (31 bp):
CAAAACCTTCAAAACCAAAACCCAAAAATCT
Found at i:7547128 original size:15 final size:15
Alignment explanation
Indices: 7547109--7547182 Score: 67
Period size: 15 Copynumber: 4.9 Consensus size: 15
7547099 CAAAACCTTA
*
7547109 AAAATCCAAAATCCA
1 AAAATCCAAAATCCT
*
7547124 AAAATCTCAAAAACCT
1 AAAATC-CAAAATCCT
* * *
7547140 CAAAGCCAAAACCCT
1 AAAATCCAAAATCCT
* *
7547155 AATATCCAAAATCTT
1 AAAATCCAAAATCCT
*
7547170 AAAATTCAAAATC
1 AAAATCCAAAATC
7547183 TCAAGCCCTA
Statistics
Matches: 46, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
15 35 0.76
16 11 0.24
ACGTcount: A:0.54, C:0.26, G:0.01, T:0.19
Consensus pattern (15 bp):
AAAATCCAAAATCCT
Found at i:7547725 original size:68 final size:67
Alignment explanation
Indices: 7547616--7547749 Score: 162
Period size: 68 Copynumber: 2.0 Consensus size: 67
7547606 ATTAACAGTG
* * * *
7547616 TTTGTATCTAAAAAAATTGCTATATTAACGGCATTTATATCTGGATAATGCCGCTAATATAGTGA
1 TTTGTATATAAAAAAATTGCTACATTAACGGCATTTATATCTGAAAAATGCCGCTAATATAGTGA
7547681 CA
66 CA
* * * * *
7547683 TTTGTATATGAAAAACATTGCTACATTAATGG-AGTTTGTATCTGAAAAATGTCGCTAATTTAGT
1 TTTGTATAT-AAAAAAATTGCTACATTAACGGCA-TTTATATCTGAAAAATGCCGCTAATATAGT
7547747 GAC
64 GAC
7547750 GTGTCAAAGG
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
67 9 0.16
68 47 0.84
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (67 bp):
TTTGTATATAAAAAAATTGCTACATTAACGGCATTTATATCTGAAAAATGCCGCTAATATAGTGA
CA
Found at i:7555181 original size:462 final size:462
Alignment explanation
Indices: 7554237--7556082 Score: 3350
Period size: 462 Copynumber: 4.0 Consensus size: 462
7554227 TTGCCAAATT
*
7554237 CATTCATTTCAACATTAGACTGATTAAATCCATCATTTTGGGGAGAAAGATTATGAAAATATTGG
1 CATTCATTTCAACATTAGACTGATTAAATCCATCATTTTGGGGAGAAAGATTATGAAAATGTTGG
* * *
7554302 TTATGAGTGTTAAAAGCATCTTGCAACATACCTTTATGTCATCTGATATAAAGAGATTATGTTGG
66 TTATGAATGTTAAAAGCATCTCGCAACATACCTTTATGTCATCTGATATAAAAAGATTATGTTGG
*
7554367 TGTTAGTGAGGGCTTGAAATTGAAGAAACTCTAGTGGAAGACCTTGATGGTATAGACTCTTCATG
131 TGTTAGTGAGGGCTTGAAATTGAAGAAACTCTAGTGGAAGACCTTGATGGTATAGACTCTCCATG
* *
7554432 AAAATACTAATTAACATATCCCGAGAGAAATCCAATACAAATTAAATGTTCAAAAAAAAACTTGA
196 AAAATACCAATTAACATATCCCGGGAGAAATCCAATACAAATTAAATGTTC-AAAAAAAACTTGA
* *
7554497 TGCATTTGCTAATCTATATTAGCACACTTCACACATGGGCATAATATCATATTATCTTCACTTAC
260 TGCATTTGCCAATCTATATTAGCACACTTCACACATGGGCATAATATCATATTATCTTCACTTAT
*
7554562 ATTTTCAAATGCAAAATTAAGAAAATTTTTCACTTCATCTTTGTACTGTTGACTTAGTTTTGACT
325 ATTTTCAAATGCAAAATTAAGAAAATTTTTCACTTCATCTTTGTACTGTTGACTTAGTCTTGACT
*
7554627 TTTACATCCAGCTCTTATCCATTGAGTACTTACTACATTATCAGACTAAATGTATATAAATAATT
390 TTTACATCCAGCTCTTATCCATTGAGTACTTACTACATTATCAGACCAAATGTATATAAATAATT
7554692 TATATATA
455 TATATATA
* *
7554700 CATTCATTTCAATATTAGACTGATTAAATCCATTATTTTGGGGAGAAAGATTATGAAAATGTTGG
1 CATTCATTTCAACATTAGACTGATTAAATCCATCATTTTGGGGAGAAAGATTATGAAAATGTTGG
* *
7554765 TTATAAATGTTAAAAGCATCTCGCAACATACCTTTATGTCATTTGATATAAAAAGATTATGTTGG
66 TTATGAATGTTAAAAGCATCTCGCAACATACCTTTATGTCATCTGATATAAAAAGATTATGTTGG
*
7554830 AGTTAGTGAGGGCTTGAAATTGAAGAAACTCTAGTGGAAGACCTTGATGGTATAGACTCTCCATG
131 TGTTAGTGAGGGCTTGAAATTGAAGAAACTCTAGTGGAAGACCTTGATGGTATAGACTCTCCATG
7554895 AAAATACCAATTAACATATCCCGGGAGAAATCCAATACAAATTAAATGTTCAAAAAAAACTTGAT
196 AAAATACCAATTAACATATCCCGGGAGAAATCCAATACAAATTAAATGTTCAAAAAAAACTTGAT
7554960 GCATTTGCCAATCTATATTAGCACACTTCACACATGGGCATAATATCATATTATCTTCACTTATA
261 GCATTTGCCAATCTATATTAGCACACTTCACACATGGGCATAATATCATATTATCTTCACTTATA
*
7555025 TTTTCAAATGCAAAATTAAAAAAATTTTTCACTTCATCTTTGTACTGTTGACTTAGTCTTGACTT
326 TTTTCAAATGCAAAATTAAGAAAATTTTTCACTTCATCTTTGTACTGTTGACTTAGTCTTGACTT
*
7555090 TTACATCCAACTCTTATCCATTGAGTACTTACTACATTATCAGACCAAATGTATATAAATAATTT
391 TTACATCCAGCTCTTATCCATTGAGTACTTACTACATTATCAGACCAAATGTATATAAATAATTT
7555155 ATATATA
456 ATATATA
*
7555162 CATTCATTTCAACATTAGACTGATTAAATCTATCATTTTGGGGAGAAAGATTATGAAAATGTTGG
1 CATTCATTTCAACATTAGACTGATTAAATCCATCATTTTGGGGAGAAAGATTATGAAAATGTTGG
7555227 TTATGAATGTTAAAAGCATCTCGCAACATACCTTTATGTCATCTGATATAAAAAGATTATGTTGG
66 TTATGAATGTTAAAAGCATCTCGCAACATACCTTTATGTCATCTGATATAAAAAGATTATGTTGG
* *
7555292 TGTTAGTGAGGGCTTGAAATTGAAAAAACTCTAGTGGAAGACCTTGATGGTATAGACTCTCTATG
131 TGTTAGTGAGGGCTTGAAATTGAAGAAACTCTAGTGGAAGACCTTGATGGTATAGACTCTCCATG
* * *
7555357 AAAATAACAATTAACATATCCTGGGAGAAATCCAATACAAATTAAATGTTAAAAAAAAACTTGAT
196 AAAATACCAATTAACATATCCCGGGAGAAATCCAATACAAATTAAATGTTCAAAAAAAACTTGAT
* *
7555422 GCATTTGCCAATCTGTATTAGCACACTTCACACATGGGCATAATATCATATTATCTTCACTTCTA
261 GCATTTGCCAATCTATATTAGCACACTTCACACATGGGCATAATATCATATTATCTTCACTTATA
7555487 TTTTCAAATGCAAAATTAAGAAAATTTTTCACTTCATCTTTGTACTGTTGACTTAGTCTTGACTT
326 TTTTCAAATGCAAAATTAAGAAAATTTTTCACTTCATCTTTGTACTGTTGACTTAGTCTTGACTT
7555552 TTACATCCAGCTCTTATCCATTGAGTACTTACTACATTATCAGACCAAATGTATATAAATAATTT
391 TTACATCCAGCTCTTATCCATTGAGTACTTACTACATTATCAGACCAAATGTATATAAATAATTT
7555617 ATATATA
456 ATATATA
* * *
7555624 CATTCATTTCAACATTAGACTGATTAAATCTATCATTTTGGGGAGAAAAATTATGAAAATGTTGA
1 CATTCATTTCAACATTAGACTGATTAAATCCATCATTTTGGGGAGAAAGATTATGAAAATGTTGG
*
7555689 TTATGAATGTTAAAAGCATCTCGCAACATACCTTTATGTCATATGATATAAAAAGATTATGTTGG
66 TTATGAATGTTAAAAGCATCTCGCAACATACCTTTATGTCATCTGATATAAAAAGATTATGTTGG
7555754 TGTTAGTGAGGGCTTGAAATTGAAGAAACTCTAGTGGAAGACCTTGATGGTATAGACTCTCCATG
131 TGTTAGTGAGGGCTTGAAATTGAAGAAACTCTAGTGGAAGACCTTGATGGTATAGACTCTCCATG
7555819 AAAATACCAATTAACATATCCCGGGAGAAATCCAATACAAATTAAATGTTCAAAAAAAACTTGAT
196 AAAATACCAATTAACATATCCCGGGAGAAATCCAATACAAATTAAATGTTCAAAAAAAACTTGAT
* * * *
7555884 GCATTTACCAATCTATATTAGCACTCTTCACACATGGACATAATATTATATTATCTTCACTTATA
261 GCATTTGCCAATCTATATTAGCACACTTCACACATGGGCATAATATCATATTATCTTCACTTATA
*
7555949 TTTTCAAATGCAAAATTAAGAAAATTTTTCACTCCATCTTTGTACTGTTGACTTAGTCTTGACTT
326 TTTTCAAATGCAAAATTAAGAAAATTTTTCACTTCATCTTTGTACTGTTGACTTAGTCTTGACTT
* *
7556014 TTACATCCAGCTCTTATCCATTGAATACTTACTACATTTTCAGACCAAATGTATATAAATAATTT
391 TTACATCCAGCTCTTATCCATTGAGTACTTACTACATTATCAGACCAAATGTATATAAATAATTT
7556079 ATAT
456 ATAT
7556083 GAAAATGAAC
Statistics
Matches: 1333, Mismatches: 50, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
462 1099 0.82
463 234 0.18
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.35
Consensus pattern (462 bp):
CATTCATTTCAACATTAGACTGATTAAATCCATCATTTTGGGGAGAAAGATTATGAAAATGTTGG
TTATGAATGTTAAAAGCATCTCGCAACATACCTTTATGTCATCTGATATAAAAAGATTATGTTGG
TGTTAGTGAGGGCTTGAAATTGAAGAAACTCTAGTGGAAGACCTTGATGGTATAGACTCTCCATG
AAAATACCAATTAACATATCCCGGGAGAAATCCAATACAAATTAAATGTTCAAAAAAAACTTGAT
GCATTTGCCAATCTATATTAGCACACTTCACACATGGGCATAATATCATATTATCTTCACTTATA
TTTTCAAATGCAAAATTAAGAAAATTTTTCACTTCATCTTTGTACTGTTGACTTAGTCTTGACTT
TTACATCCAGCTCTTATCCATTGAGTACTTACTACATTATCAGACCAAATGTATATAAATAATTT
ATATATA
Found at i:7557162 original size:186 final size:186
Alignment explanation
Indices: 7556885--7558212 Score: 1427
Period size: 186 Copynumber: 7.1 Consensus size: 186
7556875 TTTCTACTAA
* * * * * ** * *
7556885 AAACACCTTCAATAATTTT-TATTTAAAAATTGTTTAAGATTATTAAAGGTGTCTTATAGTGGAA
1 AAACGCCTTCAATAATTTTCT-TTT-ATAATT-TTTGAGATTATTAAAGGCGTTTTCCAATGAAA
** * * * *
7556949 AACACCTTCAATTTTCCACAGCTCAAATTTTAAGACGTTTATTCAAGGCGTTTATTCTAGAAAAA
63 AATGCCTTCAATATTCCACAGCTCAAATTTTAAGACGGTTAGTGAAGGCGTTTATTCTAGAAAAA
*
7557014 TGCCTTCACTAATTCCTTCTAATGTATGTACATAATTATTATAGGTATTTTTTTAGAAC
128 TGCCTTCACTAATTCCTTCTAATTTATGTACATAATTATTATAGGTATTTTTTTAGAAC
* *
7557073 AAACGCCTTCAATAATTTTCTTTTATAATTTTTGAGATTATTAAAGGCATTTTCAAATGAAAAAT
1 AAACGCCTTCAATAATTTTCTTTTATAATTTTTGAGATTATTAAAGGCGTTTTCCAATGAAAAAT
* * * * * * *
7557138 GCCTTTAATATTCCACAACTCAAATTTTAAGATGGTTAGTGAAAGTGTTTATTCTAGAATAACGC
66 GCCTTCAATATTCCACAGCTCAAATTTTAAGACGGTTAGTGAAGGCGTTTATTCTAGAAAAATGC
* * * *
7557203 CTTCACTACTTCTTTCTAATTTATGTACATAATTATTGTAGGCATTTTTTTAGAAC
131 CTTCACTAATTCCTTCTAATTTATGTACATAATTATTATAGGTATTTTTTTAGAAC
* **
7557259 AAACACCTTCAATAATTTTCTCCTATAATTTTTGAGATTATTAAAGGCGTCTTT-CAATGAAAAA
1 AAACGCCTTCAATAATTTTCTTTTATAATTTTTGAGATTATTAAAGGCGT-TTTCCAATGAAAAA
* * * * *
7557323 TGCTTTCAATATTCCACAGTTCCAATTTTAAGACGGTCAGTGAAGACGTTTATTCTA-AAATAAT
65 TGCCTTCAATATTCCACAGCTCAAATTTTAAGACGGTTAGTGAAGGCGTTTATTCTAGAAA-AAT
* * ** *
7557387 GCCTTCACTAATTCCTTTTAATTTACGTACATAATTATTATAAATATTTTTTCAGAAC
129 GCCTTCACTAATTCCTTCTAATTTATGTACATAATTATTATAGGTATTTTTTTAGAAC
* * * * * *
7557445 AAACACCTTCAATAATTTTTTTTTATAATTTTTGAGATTATTAAAGGCGTATTCCAGTAAAAAAC
1 AAACGCCTTCAATAATTTTCTTTTATAATTTTTGAGATTATTAAAGGCGTTTTCCAATGAAAAAT
* * * * **
7557510 GTCTTCAATATTCCACAGCTTAAACTTTAAGACGGTTTGTGAAGGCGTTTATTCTA-AAACAACA
66 GCCTTCAATATTCCACAGCTCAAATTTTAAGACGGTTAGTGAAGGCGTTTATTCTAGAAA-AATG
* * *
7557574 CATTCACTAATTCCTTCTAATTTACT-TACATAATTATTGTAGGTATTTTTTTAGAAA
130 CCTTCACTAATTCCTTCTAATTTA-TGTACATAATTATTATAGGTATTTTTTTAGAAC
* * * * *
7557631 AAATGCCTTCAATAA--TTCTTTTATAGTTTTT-AGGATTATTAAATGTGTCTTCCAATGAAAAA
1 AAACGCCTTCAATAATTTTCTTTTATAATTTTTGA-GATTATTAAAGGCGTTTTCCAATGAAAAA
* * * * *
7557693 TGCCTTCAATATTCTATAGCTCAAA-TTTAAGACGGTTAGTGAATGTGTTTATTCTAGAACAATG
65 TGCCTTCAATATTCCACAGCTCAAATTTTAAGACGGTTAGTGAAGGCGTTTATTCTAGAAAAATG
* * * *
7557757 CCTTCACTAATTCCTTCTAATTTACGTACATAATTATTGA-ATGTGTTTTTTAAGAAC
130 CCTTCACTAATTCCTTCTAATTTATGTACATAATTATT-ATAGGTATTTTTTTAGAAC
* * * *
7557814 AAACGCCTTCAATAATTTTCTCTTATAATTTTT-AGGATTATTAAAGGCATCTTCCAGTGAAAAA
1 AAACGCCTTCAATAATTTTCTTTTATAATTTTTGA-GATTATTAAAGGCGTTTTCCAATGAAAAA
* * * * * * * * *
7557878 TACCTTCAATATTTCATAGCTCAAATTTTAAGACGATTAGTAAATGCATTTATTCTAGAACAACG
65 TGCCTTCAATATTCCACAGCTCAAATTTTAAGACGGTTAGTGAAGGCGTTTATTCTAGAAAAATG
* * *
7557943 CCTTCATTAATTCCTTCTAATTTATGTACATAATTATTATAGGCA-TTTTTCAGAAC
130 CCTTCACTAATTCCTTCTAATTTATGTACATAATTATTATAGGTATTTTTTTAGAAC
* *
7557999 AAACAAATGCGTTCAATAATTTTCTTTTATAATTTTTG-GAATTATTAAAGGCGTCTTT-CAGT-
1 AAAC----GCCTTCAATAATTTTCTTTTATAATTTTTGAG-ATTATTAAAGGCGT-TTTCCAATG
* *
7558061 AGAAAATGCCTTCAATATTCCACAACTCAAA-TTTAAGATGGTTAGTGAAGGCGTTTATTCTAGA
60 A-AAAATGCCTTCAATATTCCACAGCTCAAATTTTAAGACGGTTAGTGAAGGCGTTTATTCTAGA
* * * **
7558125 ACAACAT--TTTCACTAATTTCTTTTAATTTACATACATAATTATTGA-AGGCGT-TTTTTTTCA
124 A-AA-ATGCCTTCACTAATTCCTTCTAATTTATGTACATAATTATT-ATA-G-GTATTTTTTT-A
7558186 GAAC
183 GAAC
* *
7558190 AAACACCCTCAATAATTTTCTTT
1 AAACGCCTTCAATAATTTTCTTT
7558213 GAAAATTATT
Statistics
Matches: 957, Mismatches: 155, Indels: 57
0.82 0.13 0.05
Matches are distributed among these distances:
183 93 0.10
184 60 0.06
185 82 0.09
186 523 0.55
187 24 0.03
188 84 0.09
189 73 0.08
190 9 0.01
191 9 0.01
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40
Consensus pattern (186 bp):
AAACGCCTTCAATAATTTTCTTTTATAATTTTTGAGATTATTAAAGGCGTTTTCCAATGAAAAAT
GCCTTCAATATTCCACAGCTCAAATTTTAAGACGGTTAGTGAAGGCGTTTATTCTAGAAAAATGC
CTTCACTAATTCCTTCTAATTTATGTACATAATTATTATAGGTATTTTTTTAGAAC
Found at i:7558760 original size:28 final size:28
Alignment explanation
Indices: 7558711--7558769 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
7558701 TGCTGAACCT
* * * *
7558711 TATTGTGTGATATTATTTTGCTAAATGG
1 TATTGTATGATATTAGTATGCTAAATCG
*
7558739 TATTGTATGATATTAGTATGCTGAATCG
1 TATTGTATGATATTAGTATGCTAAATCG
7558767 TAT
1 TAT
7558770 GCTGAATGGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.27, C:0.05, G:0.20, T:0.47
Consensus pattern (28 bp):
TATTGTATGATATTAGTATGCTAAATCG
Found at i:7558797 original size:25 final size:25
Alignment explanation
Indices: 7558769--7558825 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
7558759 CTGAATCGTA
* *
7558769 TGCTGAATGGTGTTTATGAATGATT
1 TGCTGAATGATATTTATGAATGATT
* *
7558794 TGCTGAATGATATTTCTGAGTGATT
1 TGCTGAATGATATTTATGAATGATT
*
7558819 TACTGAA
1 TGCTGAA
7558826 GGACGTGTCT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.26, C:0.07, G:0.25, T:0.42
Consensus pattern (25 bp):
TGCTGAATGATATTTATGAATGATT
Found at i:7561303 original size:16 final size:16
Alignment explanation
Indices: 7561284--7561316 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7561274 TCTTTTGTAT
7561284 TTTATGTATT-TTATTA
1 TTTAT-TATTATTATTA
7561300 TTTATTATTATTATTA
1 TTTATTATTATTATTA
7561316 T
1 T
7561317 GTATCAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (16 bp):
TTTATTATTATTATTA
Found at i:7561402 original size:111 final size:111
Alignment explanation
Indices: 7561208--7561431 Score: 439
Period size: 111 Copynumber: 2.0 Consensus size: 111
7561198 CCAGGCCCAG
*
7561208 ATCAATTGGGCTTGGCCCAAATGGGTAAGACCCAATTCGATTTTTATCCTGTATTTTTTTTCTGT
1 ATCAATTGGGCCTGGCCCAAATGGGTAAGACCCAATTCGATTTTTATCCTGTATTTTTTTTCTGT
7561273 TTCTTTTGTATTTTATGTATTTTATTATTTATTATTATTATTATGT
66 TTCTTTTGTATTTTATGTATTTTATTATTTATTATTATTATTATGT
7561319 ATCAATTGGGCCTGGCCCAAATGGGTAAGACCCAATTCGATTTTTATCCTGTATTTTTTTTCTGT
1 ATCAATTGGGCCTGGCCCAAATGGGTAAGACCCAATTCGATTTTTATCCTGTATTTTTTTTCTGT
7561384 TTCTTTTGTATTTTATGTATTTTATTATTTATTATTATTATTATGT
66 TTCTTTTGTATTTTATGTATTTTATTATTTATTATTATTATTATGT
7561430 AT
1 AT
7561432 TAATATATAT
Statistics
Matches: 112, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
111 112 1.00
ACGTcount: A:0.22, C:0.12, G:0.13, T:0.53
Consensus pattern (111 bp):
ATCAATTGGGCCTGGCCCAAATGGGTAAGACCCAATTCGATTTTTATCCTGTATTTTTTTTCTGT
TTCTTTTGTATTTTATGTATTTTATTATTTATTATTATTATTATGT
Found at i:7561404 original size:9 final size:10
Alignment explanation
Indices: 7561390--7561433 Score: 51
Period size: 9 Copynumber: 4.7 Consensus size: 10
7561380 CTGTTTCTTT
7561390 TGTATT-TTA
1 TGTATTATTA
7561399 TGTATT-TTA
1 TGTATTATTA
7561408 T-TATTTATTA
1 TGTA-TTATTA
7561418 T-TATTATTA
1 TGTATTATTA
7561427 TGTATTA
1 TGTATTA
7561434 ATATATATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
8 2 0.06
9 19 0.59
10 11 0.34
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (10 bp):
TGTATTATTA
Found at i:7561414 original size:16 final size:15
Alignment explanation
Indices: 7561395--7561459 Score: 67
Period size: 16 Copynumber: 4.1 Consensus size: 15
7561385 TCTTTTGTAT
7561395 TTTATGTATTTTATTA
1 TTTAT-TATTTTATTA
7561411 TTTATTATTATTATTA
1 TTTATTATT-TTATTA
* * *
7561427 TGTATTAATATATATA
1 TTTATTATTTTAT-TA
*
7561443 TTTATTTTTTTATTA
1 TTTATTATTTTATTA
7561458 TT
1 TT
7561460 AGATTAGATT
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
15 11 0.28
16 29 0.73
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (15 bp):
TTTATTATTTTATTA
Found at i:7562411 original size:4 final size:4
Alignment explanation
Indices: 7562404--7562528 Score: 68
Period size: 4 Copynumber: 31.0 Consensus size: 4
7562394 TTTTTTTTTC
* *
7562404 ATTT ATTT GTTT ATTT ATTT ATTT ATTT A-TT AGATT AGGTTT ATTT AATATT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT A-TTT A--TTT ATTT -AT-TT
* *
7562456 CTTT -TTAT CTTT ATTTT ATTT ATTT -TTT -TTT A-TT -TTT ATTT -TTT
1 ATTT ATT-T ATTT A-TTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
*
7562500 ATTTT ATTT ATTT -TTT TTATT ATTT ATTT
1 A-TTT ATTT ATTT ATTT AT-TT ATTT ATTT
7562529 TCTTAAATAA
Statistics
Matches: 100, Mismatches: 6, Indels: 30
0.74 0.04 0.22
Matches are distributed among these distances:
3 21 0.21
4 54 0.54
5 19 0.19
6 6 0.06
ACGTcount: A:0.21, C:0.02, G:0.03, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:7562425 original size:16 final size:15
Alignment explanation
Indices: 7562397--7562529 Score: 81
Period size: 16 Copynumber: 8.3 Consensus size: 15
7562387 TTCGAGTTTT
*
7562397 TTTTTTCATTTATTTG
1 TTTTTT-ATTTATTTA
7562413 TTTATTTATTTATTTA
1 TTT-TTTATTTATTTA
* *
7562429 TTTATTAGATTAGGTTTA
1 TTTTTTA-TTTA--TTTA
** *
7562447 TTTAATATTCTTTTTA
1 TTTTTTATT-TATTTA
*
7562463 -TCTTTATTTTATTTA
1 TTTTTTA-TTTATTTA
7562478 TTTTTT-TTTATTTTTA
1 TTTTTTATTTA--TTTA
7562494 TTTTTTATTTTATTTA
1 TTTTTTA-TTTATTTA
*
7562510 TTTTTTTTATTATTTA
1 TTTTTTAT-TTATTTA
7562526 TTTT
1 TTTT
7562530 CTTAAATAAT
Statistics
Matches: 93, Mismatches: 12, Indels: 24
0.72 0.09 0.19
Matches are distributed among these distances:
14 4 0.04
15 12 0.13
16 58 0.62
17 4 0.04
18 15 0.16
ACGTcount: A:0.20, C:0.02, G:0.03, T:0.75
Consensus pattern (15 bp):
TTTTTTATTTATTTA
Found at i:7562506 original size:32 final size:31
Alignment explanation
Indices: 7562457--7562529 Score: 112
Period size: 32 Copynumber: 2.3 Consensus size: 31
7562447 TTTAATATTC
*
7562457 TTTTTA-TCTTTATTTTATTTATTTTTTTTTA
1 TTTTTATTTTTTATTTTATTTA-TTTTTTTTA
7562488 TTTTTATTTTTTATTTTATTTATTTTTTTTA
1 TTTTTATTTTTTATTTTATTTATTTTTTTTA
7562519 TTATTTATTTT
1 TT-TTTATTTT
7562530 CTTAAATAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
31 17 0.44
32 22 0.56
ACGTcount: A:0.16, C:0.01, G:0.00, T:0.82
Consensus pattern (31 bp):
TTTTTATTTTTTATTTTATTTATTTTTTTTA
Found at i:7562667 original size:113 final size:113
Alignment explanation
Indices: 7562550--7562925 Score: 667
Period size: 113 Copynumber: 3.4 Consensus size: 113
7562540 AAAAATTCCA
7562550 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTT-CTT-AAATAAATTTCAAAAAAAAT
1 AAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAATTTCAAAAAAAAT
7562613 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCC
65 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT-C
7562663 AAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAATTTCAAAAAAAA-A
1 AAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAATTTCAAAAAAAATA
*
7562727 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTC
66 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTC
7562775 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAATTTC--AAAAAAT
1 AAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAATTTCAAAAAAAAT
7562838 ATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTC
65 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTC
7562886 -AAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
7562926 CTAACAAAAA
Statistics
Matches: 257, Mismatches: 2, Indels: 12
0.95 0.01 0.04
Matches are distributed among these distances:
109 26 0.10
110 14 0.05
111 46 0.18
112 48 0.19
113 104 0.40
114 19 0.07
ACGTcount: A:0.46, C:0.07, G:0.11, T:0.35
Consensus pattern (113 bp):
AAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAATTTCAAAAAAAATA
TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTC
Found at i:7562694 original size:57 final size:55
Alignment explanation
Indices: 7562550--7562925 Score: 634
Period size: 55 Copynumber: 6.7 Consensus size: 55
7562540 AAAAATTCCA
7562550 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTT-CTT-AAATAAATTTC
1 AAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAATTTC
7562604 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCC
1 -AAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTT-AAAATAAATTT-C
7562663 AAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAATTTC
1 AAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAATTTC
*
7562718 AAAAAAAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTC
1 AAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTT-AAAATAAATTTC
7562775 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAATTTC
1 AAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAATTTC
7562831 -AAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTC
1 AAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAATAAATTTC
7562886 -AAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
7562926 CTAACAAAAA
Statistics
Matches: 311, Mismatches: 2, Indels: 16
0.95 0.01 0.05
Matches are distributed among these distances:
54 29 0.09
55 119 0.38
56 54 0.17
57 83 0.27
58 25 0.08
59 1 0.00
ACGTcount: A:0.46, C:0.07, G:0.11, T:0.35
Consensus pattern (55 bp):
AAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAATTTC
Found at i:7562757 original size:27 final size:27
Alignment explanation
Indices: 7562725--7562814 Score: 67
Period size: 27 Copynumber: 3.2 Consensus size: 27
7562715 TTCAAAAAAA
7562725 AATTTTTGAGGAAAAGTTGAAAGTATC
1 AATTTTTGAGGAAAAGTTGAAAGTATC
** * * **
7562752 AATTTTCCTTGAAAATAAATTTCAAA--AAA
1 AA-TTT--TTGAGGA-AAAGTTGAAAGTATC
7562781 ATATTTTTGAGGAAAAGTTGAAAGTATC
1 A-ATTTTTGAGGAAAAGTTGAAAGTATC
7562809 AATTTT
1 AATTTT
7562815 CCTTAAAATA
Statistics
Matches: 44, Mismatches: 12, Indels: 14
0.63 0.17 0.20
Matches are distributed among these distances:
26 8 0.18
27 12 0.27
28 5 0.11
29 5 0.11
30 6 0.14
31 8 0.18
ACGTcount: A:0.43, C:0.06, G:0.14, T:0.37
Consensus pattern (27 bp):
AATTTTTGAGGAAAAGTTGAAAGTATC
Found at i:7568105 original size:41 final size:41
Alignment explanation
Indices: 7568044--7568499 Score: 665
Period size: 41 Copynumber: 11.1 Consensus size: 41
7568034 GATTGTCAAA
*
7568044 GAGCAATTTA-TTTTCAAAAGTCGTGGTGCCTCTGTTTGGAG
1 GAGCAATTTATTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAG
*
7568085 GAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTGGAG
1 GAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
*
7568126 GAGCAATTTATTTTTCAAAGTCGTGGTGCCTTTGTTTAGAG
1 GAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
*
7568167 GAGCAATTTA-CTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
*
7568207 GAACAATTTATTTTTTCAAAGTTCCGT--TGCCTCTGTTTAGAG
1 GAGCAATTTA-TTTTTCAAAG-T-CGTGGTGCCTCTGTTTAGAG
* *
7568249 GAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
*
7568290 GAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTATTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAG
*
7568332 GAGCAATTTA-CTTTCAAAGTTTCGT--TGCCTCTGTTTAGAG
1 GAGCAATTTATTTTTCAAAG--TCGTGGTGCCTCTGTTTAGAG
*
7568372 GAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
*
7568413 GAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTA-TTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
* * *
7568455 GAGCAATTTATTTTTCAAAGTCGTTGAGCCTCTGTTTAAAG
1 GAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
7568496 GAGC
1 GAGC
7568500 TTTGGTCAAA
Statistics
Matches: 383, Mismatches: 18, Indels: 28
0.89 0.04 0.07
Matches are distributed among these distances:
39 7 0.02
40 67 0.17
41 190 0.50
42 115 0.30
43 1 0.00
44 3 0.01
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.38
Consensus pattern (41 bp):
GAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
Found at i:7568311 original size:83 final size:80
Alignment explanation
Indices: 7568044--7568499 Score: 659
Period size: 83 Copynumber: 5.5 Consensus size: 80
7568034 GATTGTCAAA
* *
7568044 GAGCAATTTA-TTTTCAAAAGTCGTGGTGCCTCTGTTTGGAGGAGCAATTTATTTTTCAAAGTCG
1 GAGCAATTTATTTTTC-AAAGTCGT-GTGCCTCTGTTTAGAGGAGCAATTTA-CTTTCAAAGTCG
*
7568108 TGGTGCCTCTGTTTGGAG
63 TGGTGCCTCTGTTTAGAG
*
7568126 GAGCAATTTATTTTTCAAAGTCGTGGTGCCTTTGTTTAGAGGAGCAATTTACTTTCAAAGTCGTG
1 GAGCAATTTATTTTTCAAAGTCGT-GTGCCTCTGTTTAGAGGAGCAATTTACTTTCAAAGTCGTG
7568191 GTGCCTCTGTTTAGAG
65 GTGCCTCTGTTTAGAG
*
7568207 GAACAATTTATTTTTTCAAAGTTCCGT-TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTC
1 GAGCAATTTA-TTTTTCAAAG-T-CGTGTGCCTCTGTTTAGAGGAGCAATTTACTTT-CAAAGTC
7568271 GTGGTGCCTCTGTTTAGAG
62 GTGGTGCCTCTGTTTAGAG
*
7568290 GAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCAAAGTTTC
1 GAGCAATTTATTTTTC-AAAGTCGT-GTGCCTCTGTTTAGAGGAGCAATTTACTTTCAAAG--TC
7568355 GT--TGCCTCTGTTTAGAG
62 GTGGTGCCTCTGTTTAGAG
*
7568372 GAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCG
1 GAGCAATTTATTTTTCAAAGTCGT-GTGCCTCTGTTTAGAGGAGCAATTTAC-TTT-CAAAGTCG
7568437 TGGTGCCTCTGTTTAGAG
63 TGGTGCCTCTGTTTAGAG
* *
7568455 GAGCAATTTATTTTTCAAAGTCGTTGAGCCTCTGTTTAAAGGAGC
1 GAGCAATTTATTTTTCAAAGTCG-TGTGCCTCTGTTTAGAGGAGC
7568500 TTTGGTCAAA
Statistics
Matches: 348, Mismatches: 11, Indels: 29
0.90 0.03 0.07
Matches are distributed among these distances:
81 80 0.23
82 126 0.36
83 134 0.39
84 8 0.02
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.38
Consensus pattern (80 bp):
GAGCAATTTATTTTTCAAAGTCGTGTGCCTCTGTTTAGAGGAGCAATTTACTTTCAAAGTCGTGG
TGCCTCTGTTTAGAG
Found at i:7568527 original size:9 final size:8
Alignment explanation
Indices: 7568506--7568535 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
7568496 GAGCTTTGGT
7568506 CAAAAAAA
1 CAAAAAAA
*
7568514 TAAAAAAA
1 CAAAAAAA
7568522 CAAAAAAA
1 CAAAAAAA
7568530 CAAAAA
1 CAAAAA
7568536 GTGACAACGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.87, C:0.10, G:0.00, T:0.03
Consensus pattern (8 bp):
CAAAAAAA
Found at i:7568750 original size:3 final size:3
Alignment explanation
Indices: 7568724--7568854 Score: 78
Period size: 3 Copynumber: 42.3 Consensus size: 3
7568714 GTTTCTTTTG
*
7568724 TAT T-T TAT GTAT T-T TAT TATT TAT TAT TAT TAT TAT TAT GTAT TAA
1 TAT TAT TAT -TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TAT TAT
* * *
7568770 TAT ATATT TAT T-T TTT TAT TAT TA- GAT TA- GAT T-T ATAT GTAT ATAGT
1 TAT -TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT -TAT -TA-T
7568817 TAT ATATT TAT TAT TAT TA- TAT TAT TAT TAT TAT TAT T
1 TAT -TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
7568855 TTGTTTTTGT
Statistics
Matches: 103, Mismatches: 9, Indels: 32
0.72 0.06 0.22
Matches are distributed among these distances:
2 11 0.11
3 64 0.62
4 25 0.24
5 3 0.03
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:7568782 original size:45 final size:47
Alignment explanation
Indices: 7568733--7568854 Score: 137
Period size: 45 Copynumber: 2.6 Consensus size: 47
7568723 GTATTTTATG
7568733 TATTTTATTATTTATTATTATTATTATTATGTAT-TA-ATATATATT
1 TATTTTATTATTTATTATTATTATTATTATGTATATAGATATATATT
* * *
7568778 TATTTTTTTA-TTATTAGATTA-GATT-TATATGTATATAGTTATATATT
1 TATTTTATTATTTATT--ATTATTATTAT-TATGTATATAGATATATATT
7568825 TATTATTATTATATTATTATTATTATTATT
1 TATT-TTATTAT-TTATTATTATTATTATT
7568855 TTGTTTTTGT
Statistics
Matches: 62, Mismatches: 5, Indels: 16
0.75 0.06 0.19
Matches are distributed among these distances:
44 6 0.10
45 19 0.31
46 6 0.10
47 12 0.19
48 9 0.15
49 4 0.06
50 6 0.10
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (47 bp):
TATTTTATTATTTATTATTATTATTATTATGTATATAGATATATATT
Found at i:7569900 original size:4 final size:4
Alignment explanation
Indices: 7569843--7569884 Score: 66
Period size: 4 Copynumber: 10.5 Consensus size: 4
7569833 GGCTTTTTTT
* *
7569843 TTTA TTTA TTTG TTTA TTTG TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
7569885 AGATTAGGTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:7569925 original size:5 final size:5
Alignment explanation
Indices: 7569908--7569979 Score: 73
Period size: 5 Copynumber: 14.8 Consensus size: 5
7569898 TTAATATTCT
*
7569908 TTTTA TCTTTA TTTTA TTTTA CTTTA TTTTA -TTTA TTTTTA TTTT- TATTTA
1 TTTTA T-TTTA TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA T-TTTA
7569959 TTTT- TTTTA --TTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTT
7569980 CTTTAAATAA
Statistics
Matches: 57, Mismatches: 2, Indels: 16
0.76 0.03 0.21
Matches are distributed among these distances:
3 3 0.05
4 9 0.16
5 35 0.61
6 10 0.18
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:7569940 original size:42 final size:37
Alignment explanation
Indices: 7569893--7569978 Score: 100
Period size: 42 Copynumber: 2.2 Consensus size: 37
7569883 TTAGATTAGG
*
7569893 TTTATTTAATATTCTTTTTATCTTTATTTTATTTTACTTTAT
1 TTTATTTAATATTATTTTTA--TTTATTTT-TTTTA--TTAT
* *
7569935 TTTATTTATTTTTATTTTTATTTATTTTTTTTATTAT
1 TTTATTTAATATTATTTTTATTTATTTTTTTTATTAT
7569972 TTTATTT
1 TTTATTT
7569979 TCTTTAAATA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
37 11 0.27
39 5 0.12
40 8 0.20
42 17 0.41
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (37 bp):
TTTATTTAATATTATTTTTATTTATTTTTTTTATTAT
Found at i:7569958 original size:25 final size:26
Alignment explanation
Indices: 7569915--7569979 Score: 82
Period size: 25 Copynumber: 2.5 Consensus size: 26
7569905 TCTTTTTATC
7569915 TTTA-TTTTA-TTTTACTTTATTTTA
1 TTTATTTTTATTTTTACTTTATTTTA
*
7569939 TTTATTTTTATTTTTA-TTTATTTTT
1 TTTATTTTTATTTTTACTTTATTTTA
7569964 TTTATTATTTTATTTT
1 TTTA-T-TTTTATTTT
7569980 CTTTAAATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
24 4 0.11
25 17 0.47
26 6 0.17
27 9 0.25
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (26 bp):
TTTATTTTTATTTTTACTTTATTTTA
Found at i:7569964 original size:12 final size:12
Alignment explanation
Indices: 7569839--7569974 Score: 69
Period size: 12 Copynumber: 10.3 Consensus size: 12
7569829 TCCGGGCTTT
7569839 TTTTTTTATTTA
1 TTTTTTTATTTA
* *
7569851 TTTGTTTATTTG
1 TTTTTTTATTTA
*
7569863 TTTATTTATTTA
1 TTTTTTTATTTA
* *
7569875 TTTATTTATTAGA
1 TTTTTTTATT-TA
**
7569888 TTAGGTTTATTTAATA
1 TT-TTTTTA-TT--TA
7569904 TTCTTTTTATCTTTA
1 TT-TTTTTA--TTTA
7569919 TTTTATTTTACTTTA
1 -TTT-TTTTA-TTTA
7569934 TTTTATTTATTT-
1 TTTT-TTTATTTA
7569946 TTATTTTTATTTA
1 TT-TTTTTATTTA
7569959 TTTTTTT-TATTA
1 TTTTTTTAT-TTA
7569971 TTTT
1 TTTT
7569975 ATTTTCTTTA
Statistics
Matches: 101, Mismatches: 12, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
11 1 0.01
12 51 0.50
13 11 0.11
14 11 0.11
15 10 0.10
16 15 0.15
17 2 0.02
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.74
Consensus pattern (12 bp):
TTTTTTTATTTA
Found at i:7570087 original size:62 final size:59
Alignment explanation
Indices: 7569997--7570346 Score: 406
Period size: 62 Copynumber: 5.8 Consensus size: 59
7569987 TAAAAATAAA
* * **
7569997 AAATTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAAT
1 AAATTTCAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
7570056 CAAAGTTTCAAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 -AAA-TTTC-AAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* ** * **
7570118 AAATTTTTTTTTTAAAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAA
1 AAA------TTTCAAAAAAAAA-TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
7570183 T
59 T
* *
7570184 CAAAGTTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
1 -AAA-TTTCAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* *
7570245 AAATTTC--CAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 AAATTTCAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* *
7570302 AAATTTC---AAAACATA-TTTTAGGGAAAAGTTGAAAGTATCAATTTT
1 AAATTTCAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
7570347 TCCTACACAA
Statistics
Matches: 256, Mismatches: 25, Indels: 23
0.84 0.08 0.08
Matches are distributed among these distances:
55 28 0.11
56 7 0.03
57 53 0.21
59 4 0.02
60 6 0.02
61 44 0.17
62 61 0.24
65 9 0.04
66 41 0.16
67 3 0.01
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (59 bp):
AAATTTCAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
Found at i:7570236 original size:127 final size:116
Alignment explanation
Indices: 7570005--7570346 Score: 424
Period size: 127 Copynumber: 2.9 Consensus size: 116
7569995 AAAAATTCCA
*
7570005 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAAAA
1 AAAAAAAA-ATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC-AAAA
*
7570070 AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTTTTTTT
63 AAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA------TTTC
*
7570131 AAAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATCAAAGTTTCAAA
1 AAAAAAAAA---TTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAA
*
7570196 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
62 AAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTC
* * *
7570252 CAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTTC---AAA
1 AAAAAAAAATTTTTGGG-AAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAAAAA
* *
7570312 ACATATTTTAGGGAAAAGTTGAAAGTATCAATTTT
65 AAATATTTTTGGGAAAAGTTGAAAGTATCAATTTT
7570347 TCCTACACAA
Statistics
Matches: 200, Mismatches: 10, Indels: 26
0.85 0.04 0.11
Matches are distributed among these distances:
112 24 0.12
113 12 0.06
116 4 0.02
117 5 0.03
118 36 0.18
121 10 0.05
125 1 0.00
126 9 0.05
127 53 0.26
128 46 0.23
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.35
Consensus pattern (116 bp):
AAAAAAAAATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAAAAAA
AATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTC
Found at i:7570350 original size:56 final size:55
Alignment explanation
Indices: 7570007--7570346 Score: 356
Period size: 57 Copynumber: 5.7 Consensus size: 55
7569997 AAATTCCAAA
**
7570007 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC
1 AAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTTC
7570065 AAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTTTTTT
1 ----AAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-------TT
*
7570130 TA
54 TC
* **
7570132 AAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATCAAAGTTTC
1 AAAAAATA---TTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTTC
*
7570193 AAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
1 ---AAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT-C
7570253 AAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTC
1 AAAAAATATTTTTGGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTC
* *
7570309 AAAACATATTTTAGGGAAAAGTTGAAAGTATCAATTTT
1 AAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTT
7570347 TCCTACACAA
Statistics
Matches: 245, Mismatches: 17, Indels: 39
0.81 0.06 0.13
Matches are distributed among these distances:
55 22 0.09
56 17 0.07
57 51 0.21
59 3 0.01
60 4 0.02
61 44 0.18
62 46 0.19
63 7 0.03
64 7 0.03
65 1 0.00
66 37 0.15
67 6 0.02
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.35
Consensus pattern (55 bp):
AAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTC
Found at i:7570392 original size:6 final size:6
Alignment explanation
Indices: 7570383--7570411 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
7570373 CTTCCTTTCT
7570383 ATTTTG ATTTTG ATTTTG ATTTTG ATTTT
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTT
7570412 TCTTTAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.14, T:0.69
Consensus pattern (6 bp):
ATTTTG
Found at i:7571760 original size:16 final size:16
Alignment explanation
Indices: 7571739--7571769 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7571729 CTGACTTGAC
*
7571739 ATATATAATATCAAAT
1 ATATATAATAGCAAAT
7571755 ATATATAATAGCAAA
1 ATATATAATAGCAAA
7571770 AATGCCTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.06, G:0.03, T:0.32
Consensus pattern (16 bp):
ATATATAATAGCAAAT
Found at i:7580036 original size:14 final size:14
Alignment explanation
Indices: 7580017--7580046 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7580007 ACATCCTTGA
*
7580017 GATCCTCAAGTAAT
1 GATCCTCAAATAAT
7580031 GATCCTCAAATAAT
1 GATCCTCAAATAAT
7580045 GA
1 GA
7580047 GTAAAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (14 bp):
GATCCTCAAATAAT
Found at i:7580326 original size:24 final size:24
Alignment explanation
Indices: 7580290--7580341 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
7580280 TGAAATTATA
*
7580290 TTTTATTTTTTTAAATATCTAAAAT
1 TTTTATTTCTTTAAAT-TCTAAAAT
* *
7580315 TTTTA-TTCTTTATATTTTAAAAT
1 TTTTATTTCTTTAAATTCTAAAAT
7580338 TTTT
1 TTTT
7580342 TGACTTTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 11 0.46
24 8 0.33
25 5 0.21
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (24 bp):
TTTTATTTCTTTAAATTCTAAAAT
Found at i:7580358 original size:24 final size:21
Alignment explanation
Indices: 7580297--7580360 Score: 56
Period size: 24 Copynumber: 2.7 Consensus size: 21
7580287 ATATTTTATT
7580297 TTTTTAAATATCTAAAATTTTTA
1 TTTTT-AATAT-TAAAATTTTTA
*
7580320 TTCTTTATATTTTAAAATTTTTTGA
1 TT-TTTA-ATATTAAAA-TTTTT-A
7580345 CTTTTTAATATTAAAA
1 -TTTTTAATATTAAAA
7580361 ATCACAAAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
23 8 0.24
24 19 0.56
25 5 0.15
26 2 0.06
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.58
Consensus pattern (21 bp):
TTTTTAATATTAAAATTTTTA
Found at i:7582173 original size:53 final size:51
Alignment explanation
Indices: 7582115--7582216 Score: 132
Period size: 53 Copynumber: 1.9 Consensus size: 51
7582105 ATAATGAGCA
7582115 AAAAAAATTAGACAACTGTTATCTCTTATTTTCTATTATTTAATTTAAATGAGT
1 AAAAAAATTAGACAA---TTATCTCTTATTTTCTATTATTTAATTTAAATGAGT
* * *
7582169 AAAAAAAAATTAGACAATTATTTTTTATTTTTTATTATTTAATTTAAA
1 --AAAAAAATTAGACAATTATCTCTTATTTTCTATTATTTAATTTAAA
7582217 ATTAACAGTG
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
53 28 0.65
56 15 0.35
ACGTcount: A:0.42, C:0.06, G:0.05, T:0.47
Consensus pattern (51 bp):
AAAAAAATTAGACAATTATCTCTTATTTTCTATTATTTAATTTAAATGAGT
Found at i:7583787 original size:55 final size:56
Alignment explanation
Indices: 7583719--7583872 Score: 195
Period size: 55 Copynumber: 2.8 Consensus size: 56
7583709 ATTTTATAAG
* * * * *
7583719 TTTTAATCATACATAATTAATTTTTGGGCCTCTAGATAAGCTTGTAAGACAAT-TT
1 TTTTTATCGTACATAATTAATTTTTGGGCCCCTAAATAAGCTTGCAAGACAATATT
* *
7583774 TTTTTATTGTACATAATTAA-TTTTGGGACCCCTAAATAAGCTTGCAAGACATTATT
1 TTTTTATCGTACATAATTAATTTTTGGG-CCCCTAAATAAGCTTGCAAGACAATATT
* **
7583830 TTTTTATCGTACACAATTAATTTTTTAGCCCCTAAATAAGCTT
1 TTTTTATCGTACATAATTAATTTTTGGGCCCCTAAATAAGCTT
7583873 ACAGGACATC
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
54 7 0.08
55 38 0.45
56 35 0.41
57 5 0.06
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (56 bp):
TTTTTATCGTACATAATTAATTTTTGGGCCCCTAAATAAGCTTGCAAGACAATATT
Found at i:7583852 original size:56 final size:56
Alignment explanation
Indices: 7583719--7583891 Score: 181
Period size: 56 Copynumber: 3.1 Consensus size: 56
7583709 ATTTTATAAG
* * * * * *
7583719 TTTTAATCATACATAATTAATTTTTGGG-CCTCTAGATAAGCTTGTAAGACAAT-TT
1 TTTTTATCGTACATAATTAA-TTTTGGGACCCCTAAATAAGCTTGCAAGACATTATT
*
7583774 TTTTTATTGTACATAATTAATTTTGGGACCCCTAAATAAGCTTGCAAGACATTATT
1 TTTTTATCGTACATAATTAATTTTGGGACCCCTAAATAAGCTTGCAAGACATTATT
* ** * * *
7583830 TTTTTATCGTACACAATTAATTTT-TTAGCCCCTAAATAAGCTTACAGGACATCATT
1 TTTTTATCGTACATAATTAATTTTGGGA-CCCCTAAATAAGCTTGCAAGACATTATT
7583886 TATTTT
1 T-TTTT
7583892 TTTCATCTGC
Statistics
Matches: 100, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
54 7 0.07
55 39 0.39
56 50 0.50
57 4 0.04
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (56 bp):
TTTTTATCGTACATAATTAATTTTGGGACCCCTAAATAAGCTTGCAAGACATTATT
Found at i:7583965 original size:47 final size:47
Alignment explanation
Indices: 7583871--7583966 Score: 131
Period size: 47 Copynumber: 2.0 Consensus size: 47
7583861 CTAAATAAGC
* * * * *
7583871 TTACAGGACATCATTTATTTTTTTCATCTGCCAGAAGAGTACTTTTA
1 TTACAAGACATCATTTATTTTTTTCAACCGCCAGAAAAGTACATTTA
7583918 TTACAAGACATCATTTATTTTTTTCAACCGCCAGAAAAAG-ACATTTA
1 TTACAAGACATCATTTATTTTTTTCAACCGCCAG-AAAAGTACATTTA
7583965 TT
1 TT
7583967 TATGTGTTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
47 39 0.91
48 4 0.09
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.40
Consensus pattern (47 bp):
TTACAAGACATCATTTATTTTTTTCAACCGCCAGAAAAGTACATTTA
Found at i:7591189 original size:14 final size:14
Alignment explanation
Indices: 7591147--7591181 Score: 61
Period size: 14 Copynumber: 2.4 Consensus size: 14
7591137 ATGAAATAGT
7591147 CAAAAAAAATAAAAA
1 CAAAAAAAA-AAAAA
7591162 CAAAAAAAAAAAAA
1 CAAAAAAAAAAAAA
7591176 CAAAAA
1 CAAAAA
7591182 GAGAAAAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.55
15 9 0.45
ACGTcount: A:0.89, C:0.09, G:0.00, T:0.03
Consensus pattern (14 bp):
CAAAAAAAAAAAAA
Found at i:7592196 original size:33 final size:35
Alignment explanation
Indices: 7592086--7592201 Score: 137
Period size: 35 Copynumber: 3.4 Consensus size: 35
7592076 GGTATTTTTT
** *
7592086 GAAAAGATATTTACATTTCATGTGCATCATTTTAA
1 GAAAAGATATTTGTATTTCATATGCATCATTTTAA
* * *
7592121 GATAAGACATTTGTATTTCATATGCATCATTTTAG
1 GAAAAGATATTTGTATTTCATATGCATCATTTTAA
* *
7592156 GAAAAGATATTTGTATTT-GTAT-CCTCATTTTAA
1 GAAAAGATATTTGTATTTCATATGCATCATTTTAA
*
7592189 GAGAAGATATTTG
1 GAAAAGATATTTG
7592202 CATCATAATG
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
33 21 0.30
34 3 0.04
35 45 0.65
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.41
Consensus pattern (35 bp):
GAAAAGATATTTGTATTTCATATGCATCATTTTAA
Found at i:7592658 original size:147 final size:146
Alignment explanation
Indices: 7592475--7592903 Score: 520
Period size: 147 Copynumber: 2.9 Consensus size: 146
7592465 AAAAATAATC
* * * *
7592475 GGTGGTGATATTCGAGTATCAAGGTTTGAATTACATTTTCTCGATGGTGATCTTTAAGTTTCCTT
1 GGTGGTGATATCCGAGTATCAAGGTTTGAATTACATTTTTTCAATGGTGAT-TTTGAGTTTCCTT
* * * *
7592540 TGGTGACGATATCTGAAGTCATTTTTATCTTTTCGGTAGTGATATCCGAGTTTAAAGTTTGAATT
65 CGGTGACGATATCTGAAGTCATTTATATCTTCTCGGTGGTGATATCCGAGTTTAAAGTTTGAATT
* *
7592605 TGCATTTGCATTCACTT
130 TACATTTACATTCACTT
7592622 GGTGGTGATATCCGAGTATCAAGGTTTGAATTACATTTTTTCAATGGTGATATTTGAGTTTCCTT
1 GGTGGTGATATCCGAGTATCAAGGTTTGAATTACATTTTTTCAATGGTGAT-TTTGAGTTTCCTT
** ** * * *
7592687 CGGTGGTGATATCCAAAGTCATTTATATCTTCTCAGTGGTGATATCTGAGTTTAAACTTTGAATT
65 CGGTGACGATATCTGAAGTCATTTATATCTTCTCGGTGGTGATATCCGAGTTTAAAGTTTGAATT
* *
7592752 TACGTTTACATTCTCTT
130 TACATTTACATTCACTT
* * * * * ** *
7592769 GGTAGTGATATCCGAGTATTAAAGCTTGAATTATATTTTTTTTATGGTGA-TTTGAGTTTTCTTC
1 GGTGGTGATATCCGAGTATCAAGGTTTGAATTACATTTTTTCAATGGTGATTTTGAGTTTCCTTC
* * ** * *
7592833 GATAACGATATCTGAAGTCATTTGCATCTTCTCGGTGGTGATATCCGAGTATCAAGGTTTGAA-T
66 GGTGACGATATCTGAAGTCATTTATATCTTCTCGGTGGTGATATCCGAGT-TTAAAGTTTGAATT
7592897 TACATTT
130 TACATTT
7592904 TCTCGATTGT
Statistics
Matches: 239, Mismatches: 42, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
145 60 0.25
146 9 0.04
147 170 0.71
ACGTcount: A:0.24, C:0.13, G:0.21, T:0.43
Consensus pattern (146 bp):
GGTGGTGATATCCGAGTATCAAGGTTTGAATTACATTTTTTCAATGGTGATTTTGAGTTTCCTTC
GGTGACGATATCTGAAGTCATTTATATCTTCTCGGTGGTGATATCCGAGTTTAAAGTTTGAATTT
ACATTTACATTCACTT
Found at i:7592875 original size:244 final size:246
Alignment explanation
Indices: 7592622--7593150 Score: 688
Period size: 244 Copynumber: 2.2 Consensus size: 246
7592612 GCATTCACTT
* *
7592622 GGTGGTGATATCCGAGTATCAAGGTTTGAATTACATTTTTTCAATGGTGATATTTGAGTTTCCTT
1 GGTGGTGATATCCGAGTATCAAGGTTTGAATTACATTTTCTCAATGGTGATATTCGAGTTTCCTT
* * * * *
7592687 CGGTGGTGATATCCAAAGTCATTTATATCTTCTCAGTGGTGATATCTGAGTTTAAACTTTGAATT
66 CGGTGGCGATATCCAAAGTCATGTACATCTTCTCAGTGATGATATATGAGTTTAAACTTTGAATT
* * ** * * ** **
7592752 TACGTTTACATTCTCTTGGTAGTGATATCCGAGTATTAAAGCTTGAATTATATTTTTTTTATGGT
131 TACATTTACATTCACTCAGTAGTGATATCCGAGTATTAAAGCTTGAATTACATTTTATCAATAAT
**
7592817 GAT-TT-GAGTTTTCTTCGATAACGATA-TCTGAAGTCATTTGCATCTTCTC
196 GATATTCGAGTTACCTTCGATAACGATATTC-GAAGTCATTTGCATCTTCTC
* *
7592866 GGTGGTGATATCCGAGTATCAAGGTTTGAATTACATTTTCTCGATTGTGATATTCGAGTTTCCTT
1 GGTGGTGATATCCGAGTATCAAGGTTTGAATTACATTTTCTCAATGGTGATATTCGAGTTTCCTT
* * * * *
7592931 CGGTGGCGATATCGAAAGTCATGTGCATTTTCTCGGTGATGATATATGAGTTTAAAGTTTGAATT
66 CGGTGGCGATATCCAAAGTCATGTACATCTTCTCAGTGATGATATATGAGTTTAAACTTTGAATT
* * *
7592996 TATATTTACATTCACTCAGTGGTGATATCCGAGTATTAAAGTTTGAATTACATTTTATCAATAAT
131 TACATTTACATTCACTCAGTAGTGATATCCGAGTATTAAAGCTTGAATTACATTTTATCAATAAT
** * *
7593061 GATATTCGAGTTACCTTCGATGGCGATATTCGAAGTCATTTGTATCTTCTT
196 GATATTCGAGTTACCTTCGATAACGATATTCGAAGTCATTTGCATCTTCTC
* * *
7593112 GGTGGTGATATCTGAGT-TTAAAGTTTGAATTTACATTTT
1 GGTGGTGATATCCGAGTATCAAGGTTTGAA-TTACATTTT
7593151 GCATTCACTC
Statistics
Matches: 245, Mismatches: 36, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
244 171 0.70
245 12 0.05
246 60 0.24
247 2 0.01
ACGTcount: A:0.25, C:0.13, G:0.20, T:0.42
Consensus pattern (246 bp):
GGTGGTGATATCCGAGTATCAAGGTTTGAATTACATTTTCTCAATGGTGATATTCGAGTTTCCTT
CGGTGGCGATATCCAAAGTCATGTACATCTTCTCAGTGATGATATATGAGTTTAAACTTTGAATT
TACATTTACATTCACTCAGTAGTGATATCCGAGTATTAAAGCTTGAATTACATTTTATCAATAAT
GATATTCGAGTTACCTTCGATAACGATATTCGAAGTCATTTGCATCTTCTC
Found at i:7592958 original size:99 final size:97
Alignment explanation
Indices: 7592773--7592975 Score: 237
Period size: 99 Copynumber: 2.1 Consensus size: 97
7592763 TCTCTTGGTA
* * * ** *
7592773 GTGATATCCGAGTATTAAAGCTTGAATTATATTTTTTTTATGGTGATTTGAGTTTTCTTCGATAA
1 GTGATATCCGAGTATCAAAGCTTGAATTACATTTTCTCGATGGTGATTTGAGTTTCCTTCGATAA
*
7592838 CGATATCTGAAGTCATTTGCATCTTCTCGGTG
66 CGATATCTGAAGTCATGTGCATCTTCTCGGTG
* * * *
7592870 GTGATATCCGAGTATCAAGGTTTGAATTACATTTTCTCGATTGTGATATTCGAGTTTCCTTCGGT
1 GTGATATCCGAGTATCAAAGCTTGAATTACATTTTCTCGATGGTGAT-TT-GAGTTTCCTTCGAT
** *
7592935 GGCGATATC-GAAAGTCATGTGCATTTTCTCGGTG
64 AACGATATCTG-AAGTCATGTGCATCTTCTCGGTG
*
7592969 ATGATAT
1 GTGATAT
7592976 ATGAGTTTAA
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
97 39 0.44
98 3 0.03
99 46 0.52
ACGTcount: A:0.23, C:0.14, G:0.22, T:0.41
Consensus pattern (97 bp):
GTGATATCCGAGTATCAAAGCTTGAATTACATTTTCTCGATGGTGATTTGAGTTTCCTTCGATAA
CGATATCTGAAGTCATGTGCATCTTCTCGGTG
Found at i:7593219 original size:148 final size:147
Alignment explanation
Indices: 7592863--7593419 Score: 694
Period size: 147 Copynumber: 3.8 Consensus size: 147
7592853 TTTGCATCTT
* * *
7592863 CTCGGTGGTGATATCCGAGTATCAAGGTTTGAATTACATTTTCTCGATTGTGATATTCGAGTTTC
1 CTCGGTGGTGATATCCGAGTATTAAAGTTTGAATTACATTTTCTCGATAGTGATATTCGAGTTTC
* * * * * * *
7592928 CTTCGGTGGCGATAT-CGAAAGTCATGTGCATTTTCTCGGTGATGATATATGAGTTTAAAGTTTG
66 CTTCGATGACGATATCCG-AAGTCATTTGCATCTTCTTGGTGGTGATATCTGAGTTTAAAGTTTG
* *
7592992 AATTTATATTTACATTCA
130 AATTTACATTTGCATTCA
* * * * *
7593010 CTCAGTGGTGATATCCGAGTATTAAAGTTTGAATTACATTTTATCAATAATGATATTCGAGTTAC
1 CTCGGTGGTGATATCCGAGTATTAAAGTTTGAATTACATTTTCTCGATAGTGATATTCGAGTTTC
* * *
7593075 CTTCGATGGCGATATTCGAAGTCATTTGTATCTTCTTGGTGGTGATATCTGAGTTTAAAGTTTGA
66 CTTCGATGACGATATCCGAAGTCATTTGCATCTTCTTGGTGGTGATATCTGAGTTTAAAGTTTGA
7593140 ATTTACATTTTGCATTCA
131 ATTTACA-TTTGCATTCA
* * * * *
7593158 CTCGGTGGTGATATTCGAGTATTAATGTTTGAATTATATTTTTTCGATAGTGATATTCGAGTTTT
1 CTCGGTGGTGATATCCGAGTATTAAAGTTTGAATTACATTTTCTCGATAGTGATATTCGAGTTTC
* * *
7593223 CTTC-ATTGACGATATCCGAAGTCATTTGCATATTCTTGATAGTGATATCTGAGTTTAAAGTTTG
66 CTTCGA-TGACGATATCCGAAGTCATTTGCATCTTCTTGGTGGTGATATCTGAGTTTAAAGTTTG
* *
7593287 AATTTGCATTTGCATTCT
130 AATTTACATTTGCATTCA
* * *
7593305 CTCGGTGGTGATATCTGAGTATTAAAGCTTGAATTACATTTTCTCGATGGTG--A-T-GAGTTTC
1 CTCGGTGGTGATATCCGAGTATTAAAGTTTGAATTACATTTTCTCGATAGTGATATTCGAGTTTC
* * * * * *
7593366 CTTCGGTGATGATATCCGAATTCATATGCATCTTCTTGGGGGTGATATCCGAGT
66 CTTCGATGACGATATCCGAAGTCATTTGCATCTTCTTGGTGGTGATATCTGAGT
7593420 ATCAAGGTTG
Statistics
Matches: 355, Mismatches: 51, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
143 50 0.14
144 1 0.00
145 1 0.00
147 173 0.49
148 130 0.37
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.41
Consensus pattern (147 bp):
CTCGGTGGTGATATCCGAGTATTAAAGTTTGAATTACATTTTCTCGATAGTGATATTCGAGTTTC
CTTCGATGACGATATCCGAAGTCATTTGCATCTTCTTGGTGGTGATATCTGAGTTTAAAGTTTGA
ATTTACATTTGCATTCA
Found at i:7593301 original size:48 final size:49
Alignment explanation
Indices: 7593245--7593339 Score: 131
Period size: 48 Copynumber: 2.0 Consensus size: 49
7593235 TATCCGAAGT
* *
7593245 CATTTGCATAT-TCTTGATAGTGATATCTGAGT-TTAAAGTTTGAATTTG
1 CATTTGCAT-TCTCTCGATAGTGATATCTGAGTATTAAAGCTTGAATTTG
* *
7593293 CATTTGCATTCTCTCGGTGGTGATATCTGAGTATTAAAGCTTGAATT
1 CATTTGCATTCTCTCGATAGTGATATCTGAGTATTAAAGCTTGAATT
7593340 ACATTTTCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
47 1 0.02
48 27 0.66
49 13 0.32
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.43
Consensus pattern (49 bp):
CATTTGCATTCTCTCGATAGTGATATCTGAGTATTAAAGCTTGAATTTG
Found at i:7593509 original size:99 final size:95
Alignment explanation
Indices: 7593293--7593521 Score: 273
Period size: 99 Copynumber: 2.4 Consensus size: 95
7593283 TTTGAATTTG
* *
7593293 CATTTGCATTCTCTCGGTGGTGATATCTGAGTATTAAAGCTTGAATTACATTTTCTCGATGGTGA
1 CATTTGCATTTTCTCGGTGGTGATATCCGAGTATTAAAGCTTGAATTACATTTTCTCGATGGTGA
*
7593358 TGAGTTTCCTTCGGTGATGATATCCGAATT
66 TGAGTTTCCTTCGGTGATGATATCCGAAAT
* * * * * * * *
7593388 CATATGCATCTTCTTGGGGGTGATATCCGAGTA-TCAAGGTTGGAATTGCATTTTTTCGATGGTG
1 CATTTGCATTTTCTCGGTGGTGATATCCGAGTATTAAAGCTT-GAATTACATTTTCTCGATGGTG
* *
7593452 ATATTCGAGTTTCCTTCGGTGGTGATATTCGAAAT
65 --A-T-GAGTTTCCTTCGGTGATGATATCCGAAAT
*
7593487 CATTTGCATTTTCTCGGTGGTGATATCTGAG-ATTA
1 CATTTGCATTTTCTCGGTGGTGATATCCGAGTATTA
7593522 TTTATCCTTC
Statistics
Matches: 109, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
94 6 0.06
95 47 0.43
97 1 0.01
98 2 0.02
99 53 0.49
ACGTcount: A:0.21, C:0.15, G:0.24, T:0.40
Consensus pattern (95 bp):
CATTTGCATTTTCTCGGTGGTGATATCCGAGTATTAAAGCTTGAATTACATTTTCTCGATGGTGA
TGAGTTTCCTTCGGTGATGATATCCGAAAT
Found at i:7594412 original size:18 final size:18
Alignment explanation
Indices: 7594358--7594419 Score: 54
Period size: 20 Copynumber: 3.3 Consensus size: 18
7594348 GAAATCCTGC
*
7594358 AAAAAAAAGTTTCCAAAA
1 AAAAAAAACTTTCCAAAA
* *
7594376 AAAAAAATCTTCTTGCAAAA
1 AAAAAAAAC-T-TTCCAAAA
7594396 AAAAAAAACTATT-CAAATA
1 AAAAAAAACT-TTCCAAA-A
7594415 AAAAA
1 AAAAA
7594420 CACAGTCACC
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
18 11 0.31
19 10 0.28
20 15 0.42
ACGTcount: A:0.66, C:0.11, G:0.03, T:0.19
Consensus pattern (18 bp):
AAAAAAAACTTTCCAAAA
Found at i:7596448 original size:5 final size:5
Alignment explanation
Indices: 7596438--7596471 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
7596428 CCAACCTACC
7596438 TTTTA TTTTA -TTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
7596472 ATTAAACAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:7596453 original size:9 final size:9
Alignment explanation
Indices: 7596439--7596469 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
7596429 CAACCTACCT
7596439 TTTATTTTA
1 TTTATTTTA
7596448 TTTATTTTA
1 TTTATTTTA
7596457 TTTTATTTTA
1 -TTTATTTTA
7596467 TTT
1 TTT
7596470 TAATTAAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:7596457 original size:14 final size:15
Alignment explanation
Indices: 7596438--7596471 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
7596428 CCAACCTACC
7596438 TTTTATTTTA-TTTA
1 TTTTATTTTATTTTA
7596452 TTTTATTTTATTTTA
1 TTTTATTTTATTTTA
7596467 TTTTA
1 TTTTA
7596472 ATTAAACAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTATTTTATTTTA
Found at i:7596499 original size:10 final size:10
Alignment explanation
Indices: 7596479--7596552 Score: 62
Period size: 10 Copynumber: 7.4 Consensus size: 10
7596469 TTAATTAAAC
7596479 AAAATAGAAAA
1 AAAATA-AAAA
7596490 AAAATAAAAA
1 AAAATAAAAA
*
7596500 AAAATGAAAAT
1 AAAAT-AAAAA
*
7596511 GAAA-AAAAA
1 AAAATAAAAA
* *
7596520 ACAA-ACAAA
1 AAAATAAAAA
*
7596529 AAAATACAAA
1 AAAATAAAAA
*
7596539 AAAAGAAAAA
1 AAAATAAAAA
7596549 AAAA
1 AAAA
7596553 GATAGGGGAC
Statistics
Matches: 52, Mismatches: 9, Indels: 5
0.79 0.14 0.08
Matches are distributed among these distances:
9 13 0.25
10 26 0.50
11 13 0.25
ACGTcount: A:0.84, C:0.04, G:0.05, T:0.07
Consensus pattern (10 bp):
AAAATAAAAA
Found at i:7602969 original size:13 final size:13
Alignment explanation
Indices: 7602953--7602977 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7602943 AAATCGTCAA
7602953 AAAAAATAAAAAT
1 AAAAAATAAAAAT
7602966 AAAAAATAAAAA
1 AAAAAATAAAAA
7602978 GGGCGAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:7603750 original size:19 final size:20
Alignment explanation
Indices: 7603709--7603752 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
7603699 GCAGCAAAGA
*
7603709 AAAGATTTGGAATTGAGATG
1 AAAGATTCGGAATTGAGATG
*
7603729 AAAGATTCGGGATTGA-ATG
1 AAAGATTCGGAATTGAGATG
7603748 AAAGA
1 AAAGA
7603753 GAACTTTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.43, C:0.02, G:0.30, T:0.25
Consensus pattern (20 bp):
AAAGATTCGGAATTGAGATG
Found at i:7603981 original size:35 final size:35
Alignment explanation
Indices: 7603895--7604009 Score: 112
Period size: 35 Copynumber: 3.3 Consensus size: 35
7603885 TTATTTTTGA
* *
7603895 AAAAGATATTTGCATTTCATGTGCATCATTTTAAG
1 AAAAGACATTTGTATTTCATGTGCATCATTTTAAG
* * * * *
7603930 AAAAAACCTTTATATTTCATGTGTATCATTTTAGG
1 AAAAGACATTTGTATTTCATGTGCATCATTTTAAG
*
7603965 AAAAGACATTTGTATTTGCA--T-CCTCATTTTAA-
1 AAAAGACATTTGTATTT-CATGTGCATCATTTTAAG
7603997 AAGAAGACATTTG
1 AA-AAGACATTTG
7604010 CATTATAATG
Statistics
Matches: 65, Mismatches: 13, Indels: 6
0.77 0.15 0.07
Matches are distributed among these distances:
32 2 0.03
33 18 0.28
34 1 0.02
35 42 0.65
36 2 0.03
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.39
Consensus pattern (35 bp):
AAAAGACATTTGTATTTCATGTGCATCATTTTAAG
Found at i:7604399 original size:42 final size:41
Alignment explanation
Indices: 7604317--7604525 Score: 170
Period size: 42 Copynumber: 4.9 Consensus size: 41
7604307 AAAAAGTCAT
** * * *
7604317 TTGCATCTT-TTCGGTGGTGATATATGAGTGTCAAGTTTTGAA
1 TTGCATCTTCTT-GGTGGTGATATCCGAGTATTAA-ATTTGAA
* * * *
7604359 TTCCATTTTTTTGGTGGTGATATTCGAGTATTAATATTTGAA
1 TTGCATCTTCTTGGTGGTGATATCCGAGTATTAA-ATTTGAA
*
7604401 TTGCATCTTCTTGATGGTGATATCCGAGTATTAAGATTTGAA
1 TTGCATCTTCTTGGTGGTGATATCCGAGTATTAA-ATTTGAA
** *
7604443 TTGCATCTTCTCAGTGGTGATATCCGAGT-TTAAATTTTAAA
1 TTGCATCTTCTTGGTGGTGATATCCGAGTATTAAA-TTTGAA
*
7604484 TTTACATTTGCATTCTCTCGGTGGTGATATCCGAGTATTAAA
1 -TTGCA--T-C-TTCT-T-GGTGGTGATATCCGAGTATTAAA
7604526 GCTTGAACTG
Statistics
Matches: 136, Mismatches: 21, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
40 1 0.01
41 9 0.07
42 97 0.71
43 2 0.01
44 1 0.01
45 1 0.01
46 4 0.03
48 16 0.12
49 5 0.04
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.43
Consensus pattern (41 bp):
TTGCATCTTCTTGGTGGTGATATCCGAGTATTAAATTTGAA
Found at i:7604574 original size:42 final size:42
Alignment explanation
Indices: 7604495--7604603 Score: 119
Period size: 42 Copynumber: 2.6 Consensus size: 42
7604485 TTACATTTGC
** **
7604495 ATTCTCTCGGTGGTGATATCCGAGTATTAAAGCTTGAACTGT
1 ATTCTCTCGGTGGTGATATATGAGTACCAAAGCTTGAACTGT
* * *
7604537 ATTCTCTCGGTGGTGATATATGAGTGCCAAAGTTTGAATTGT
1 ATTCTCTCGGTGGTGATATATGAGTACCAAAGCTTGAACTGT
* * * *
7604579 ATTTTCTCGATGATGATATTTGAGT
1 ATTCTCTCGGTGGTGATATATGAGT
7604604 TTTCGTCGGT
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 56 1.00
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.39
Consensus pattern (42 bp):
ATTCTCTCGGTGGTGATATATGAGTACCAAAGCTTGAACTGT
Found at i:7604763 original size:42 final size:42
Alignment explanation
Indices: 7604680--7604786 Score: 108
Period size: 42 Copynumber: 2.5 Consensus size: 42
7604670 AAATTTGCAT
* *
7604680 TTGCATTCTCTCGGTGGTGATATCTGAGTATTAAAGCTTGAA
1 TTGCATTCTCTCGGTGGTGATATCTGAATATCAAAGCTTGAA
* * * *
7604722 TTGCATTCTCTTGGTGGTGATCT-TCGAATATCAAGGTTTGAA
1 TTGCATTCTCTCGGTGGTGATATCT-GAATATCAAAGCTTGAA
* * * *
7604764 TTGTATTTTCTCGATGATGATAT
1 TTGCATTCTCTCGGTGGTGATAT
7604787 TCGAGTTTCC
Statistics
Matches: 52, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
41 1 0.02
42 51 0.98
ACGTcount: A:0.22, C:0.13, G:0.22, T:0.42
Consensus pattern (42 bp):
TTGCATTCTCTCGGTGGTGATATCTGAATATCAAAGCTTGAA
Found at i:7604779 original size:189 final size:187
Alignment explanation
Indices: 7604442--7604918 Score: 598
Period size: 189 Copynumber: 2.5 Consensus size: 187
7604432 TAAGATTTGA
* *
7604442 ATTGCATCTTCTCAGTGGTGATATCCGAGTTTAAATTTTAAATTTACATTTGCATTCTCTCGGTG
1 ATTGCAT-TTCTCAGTGGTGATATCTGAGTTTAAATTTTAAATTTGCATTTGCATTCTCTCGGTG
* * * * *
7604507 GTGATATCCGAGTATTAAAGCTTGAACTGTATTCTCTCGGTGGTGATATATGAGTGCCAAAGTTT
65 GTGATATCTGAGTATTAAAGCTTGAATTGCATTCTCTCGGTGGTGATATATGAATACCAAAGTTT
* * * *
7604572 GAATTGTATTTTCTCGATGATGATATTTGAGTTTTCGTCGGTGACGATATCCGAAGTC
130 GAATTGTATTTTCTCGATGATGATATTCGAGTTTCCGTCGGTGACAATATCCAAAGTC
* * *
7604630 ATTTGCATATTCTCAATAGTGATATTTGAGTTTAAATTTTAAATTTGCATTTGCATTCTCTCGGT
1 A-TTGCAT-TTCTCAGTGGTGATATCTGAGTTTAAATTTTAAATTTGCATTTGCATTCTCTCGGT
* * * *
7604695 GGTGATATCTGAGTATTAAAGCTTGAATTGCATTCTCTTGGTGGTGATCT-TCGAATATCAAGGT
64 GGTGATATCTGAGTATTAAAGCTTGAATTGCATTCTCTCGGTGGTGATATAT-GAATACCAAAGT
* ** *
7604759 TTGAATTGTATTTTCTCGATGATGATATTCGAGTTTCCTTCGGTGGTAATATTCAAAGTC
128 TTGAATTGTATTTTCTCGATGATGATATTCGAGTTTCCGTCGGTGACAATATCCAAAGTC
* * * * * * **
7604819 ATGGACACCTTTTTCGGTGGTGATATCTGAGTTTAAAGTTTGAATTTGCATTTGCATTCTTTCAA
1 ATTG-CA--TTTCTCAGTGGTGATATCTGAGTTTAAATTTTAAATTTGCATTTGCATTCTCTCGG
7604884 TGGTGATAT-TCGAGTATTAAAGCTTGAATTGCATT
63 TGGTGATATCT-GAGTATTAAAGCTTGAATTGCATT
7604919 TTTTTCAATG
Statistics
Matches: 249, Mismatches: 34, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
188 4 0.02
189 166 0.67
190 78 0.31
191 1 0.00
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.41
Consensus pattern (187 bp):
ATTGCATTTCTCAGTGGTGATATCTGAGTTTAAATTTTAAATTTGCATTTGCATTCTCTCGGTGG
TGATATCTGAGTATTAAAGCTTGAATTGCATTCTCTCGGTGGTGATATATGAATACCAAAGTTTG
AATTGTATTTTCTCGATGATGATATTCGAGTTTCCGTCGGTGACAATATCCAAAGTC
Found at i:7604916 original size:48 final size:43
Alignment explanation
Indices: 7604836--7604943 Score: 121
Period size: 43 Copynumber: 2.4 Consensus size: 43
7604826 CCTTTTTCGG
*
7604836 TGGTGATA-TCTGAGTTTAAAGTTTGAATTTGCATTTGCATTCTTTCAA
1 TGGTGATATTC-GAGTTTAAAGCTTGAATTTGCA-TT---TT-TTTCAA
7604884 TGGTGATATTCGAGTATTAAAGCTTGAA-TTGCATTTTTTTCAA
1 TGGTGATATTCGAGT-TTAAAGCTTGAATTTGCATTTTTTTCAA
*
7604927 TGGTGATATTTGAGTTT
1 TGGTGATATTCGAGTTT
7604944 CCTTTGATGG
Statistics
Matches: 56, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
42 2 0.04
43 20 0.36
44 2 0.04
47 2 0.04
48 17 0.30
49 13 0.23
ACGTcount: A:0.25, C:0.08, G:0.20, T:0.46
Consensus pattern (43 bp):
TGGTGATATTCGAGTTTAAAGCTTGAATTTGCATTTTTTTCAA
Found at i:7605163 original size:147 final size:146
Alignment explanation
Indices: 7604722--7605166 Score: 509
Period size: 148 Copynumber: 3.0 Consensus size: 146
7604712 AAAGCTTGAA
* * * * * * *
7604722 TTGCATTCTCTTGGTGGTGATCTTCGAATATCAAGGTTTGAATTGTATTTTCTCGATGATGATAT
1 TTGCATTCTCTCGATGGTGATATTCGAGTATCAAGGTTTGAATTGCATTTTCTCAATGGTGATAT
* * * * * * *
7604787 TCGAGTTTCCTTCGGTGGTAATAT-TCAAAGTCATG-GACACCTTTTTCGGTGGTGATATCTGAG
66 TCGAGTTTCCTT-TGTGGTGATATCT-GAAGTCATGTG-CATC-TTCTCGATGGTGATATCCGAG
*
7604850 TTTAAAGTTTGAATTTGCAT
127 TTTAAAGTTTGAATTTGTAT
* * * * * *
7604870 TTGCATTCTTTCAATGGTGATATTCGAGTATTAAAGCTTGAATTGCATTTTTTTCAATGGTGATA
1 TTGCATTCTCTCGATGGTGATATTCGAGTATCAAGGTTTGAATTGCA-TTTTCTCAATGGTGATA
* * * *
7604935 TTTGAGTTTCCTTTGATGGTGATATCCGAAGTCATTTGTATCTTCTCGATGGTGATATCCGAGTT
65 TTCGAGTTTCCTTTG-TGGTGATATCTGAAGTCATGTGCATCTTCTCGATGGTGATATCCGAGTT
*
7605000 TAAATTTTGAATTTGTAT
129 TAAAGTTTGAATTTGTAT
* *
7605018 TTGCATTCTCTCGATGGTGATATCCGAGTATCAAGGTTTGAATTGCATTTTCTCCATGGTGATAT
1 TTGCATTCTCTCGATGGTGATATTCGAGTATCAAGGTTTGAATTGCATTTTCTCAATGGTGATAT
* *
7605083 TCGAGTTTCCTTTAGTGGTGACATCTGAAGTCATGTGCATCTTCTCGATGGTGATATCCAAGTAT
66 TCGAGTTTCCTTT-GTGGTGATATCTGAAGTCATGTGCATCTTCTCGATGGTGATATCCGAGT-T
* *
7605148 TAAAGCTT-AAATTGTAT
129 TAAAGTTTGAATTTGTAT
7605165 TT
1 TT
7605167 TCTCAATGGT
Statistics
Matches: 248, Mismatches: 43, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
147 81 0.33
148 123 0.50
149 43 0.17
150 1 0.00
ACGTcount: A:0.23, C:0.14, G:0.21, T:0.42
Consensus pattern (146 bp):
TTGCATTCTCTCGATGGTGATATTCGAGTATCAAGGTTTGAATTGCATTTTCTCAATGGTGATAT
TCGAGTTTCCTTTGTGGTGATATCTGAAGTCATGTGCATCTTCTCGATGGTGATATCCGAGTTTA
AAGTTTGAATTTGTAT
Found at i:7605190 original size:99 final size:99
Alignment explanation
Indices: 7605026--7605239 Score: 277
Period size: 99 Copynumber: 2.2 Consensus size: 99
7605016 ATTTGCATTC
* * * * *
7605026 TCTCGATGGTGATATCCGAGTATCAAGGTTTGAATTGCATTTTCTCCATGGTGATATTCGAGTTT
1 TCTCGATGGTGATATCCAAGTATCAAAGCTTAAATTGCATTTTCTCAATGGTGATATTCGAGTTT
** * *
7605091 CCTTTAG-TGGTGACATCTGAAGTCATGTGCATCT
66 CC-TTAGATGACGACATCTGAAGACATGTGCATAT
* *
7605125 TCTCGATGGTGATATCCAAGTATTAAAGCTTAAATTGTATTTTCTCAATGGTGATATTCGAGTTT
1 TCTCGATGGTGATATCCAAGTATCAAAGCTTAAATTGCATTTTCTCAATGGTGATATTCGAGTTT
* * *
7605190 CCTTCGATGACGATATCTGAAGACATTTGCATAT
66 CCTTAGATGACGACATCTGAAGACATGTGCATAT
*
7605224 TCTCGGTGGTGATATC
1 TCTCGATGGTGATATC
7605240 TGAGTTTAAA
Statistics
Matches: 99, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
98 3 0.03
99 96 0.97
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.38
Consensus pattern (99 bp):
TCTCGATGGTGATATCCAAGTATCAAAGCTTAAATTGCATTTTCTCAATGGTGATATTCGAGTTT
CCTTAGATGACGACATCTGAAGACATGTGCATAT
Found at i:7605236 original size:246 final size:247
Alignment explanation
Indices: 7604883--7605385 Score: 681
Period size: 246 Copynumber: 2.0 Consensus size: 247
7604873 CATTCTTTCA
* * * * *
7604883 ATGGTGATATTCGAGTATTAAAGCTTGAATTGCATTTTTTTCAATGGTGATATTTGAGTTTCCTT
1 ATGGTGATATCCAAGTATTAAAGCTTAAATTGCATTTTTCTCAATGGTGATATTCGAGTTTCCTT
* ** * * * *
7604948 TGATGGTGATATCCGAAGTCATTTGTATCTTCTCGATGGTGATATCCGAGTTTAAATTTTGAATT
66 CGATGACGATATCCGAAGACATTTGCATATTCTCGATGGTGATATCCGAGTTTAAAATTTGAATT
* *
7605013 TGTATTTGCA-TTCTCTC-GATGGTGATATCCGAGTATCAAGGTTTGAA-TTGCATTTTCTCCAT
131 TGCATTTGCATTTC-CTCAG-TGGTGATATCCGAGT-TCAAAGTTTGAATTTGCATTTTCTCCAT
* * **
7605075 GGTGATATTCGAGTTTCCTTTAGTGGTGACATCTGAAGTCATGTGCATCTTCTCG
193 GGTGATATTCAAGTTTCCTTCAGTGACGACATCTGAAGTCATGTGCATCTTCTCG
*
7605130 ATGGTGATATCCAAGTATTAAAGCTTAAATTGTA-TTTTCTCAATGGTGATATTCGAGTTTCCTT
1 ATGGTGATATCCAAGTATTAAAGCTTAAATTGCATTTTTCTCAATGGTGATATTCGAGTTTCCTT
* * *
7605194 CGATGACGATATCTGAAGACATTTGCATATTCTCGGTGGTGATATCTGAGTTTAAAATTTGAATT
66 CGATGACGATATCCGAAGACATTTGCATATTCTCGATGGTGATATCCGAGTTTAAAATTTGAATT
* * *
7605259 TGCATTTGCATTTCCTCAGTGGTGATATCCGAGTTTAAAGTTTGAATTTGTATTTTCTCGATGGT
131 TGCATTTGCATTTCCTCAGTGGTGATATCCGAGTTCAAAGTTTGAATTTGCATTTTCTCCATGGT
* * * *
7605324 GATATTCAAGTTTCCTTCGGTGACGATATTTGAAGTCATTTGCATCTTCTCG
196 GATATTCAAGTTTCCTTCAGTGACGACATCTGAAGTCATGTGCATCTTCTCG
*
7605376 GTGGTGATAT
1 ATGGTGATAT
7605386 TCGAGATTAT
Statistics
Matches: 223, Mismatches: 30, Indels: 7
0.86 0.12 0.03
Matches are distributed among these distances:
245 10 0.04
246 179 0.80
247 34 0.15
ACGTcount: A:0.23, C:0.14, G:0.21, T:0.42
Consensus pattern (247 bp):
ATGGTGATATCCAAGTATTAAAGCTTAAATTGCATTTTTCTCAATGGTGATATTCGAGTTTCCTT
CGATGACGATATCCGAAGACATTTGCATATTCTCGATGGTGATATCCGAGTTTAAAATTTGAATT
TGCATTTGCATTTCCTCAGTGGTGATATCCGAGTTCAAAGTTTGAATTTGCATTTTCTCCATGGT
GATATTCAAGTTTCCTTCAGTGACGACATCTGAAGTCATGTGCATCTTCTCG
Found at i:7605260 original size:42 final size:42
Alignment explanation
Indices: 7605214--7605328 Score: 122
Period size: 48 Copynumber: 2.6 Consensus size: 42
7605204 ATCTGAAGAC
*
7605214 ATTTGCATATTCTCGGTGGTGATATCTGAGTTTAAAATTTGA
1 ATTTGCATATTCTCGGTGGTGATATCCGAGTTTAAAATTTGA
* *
7605256 ATTTGCATTTGCATTTCCTCAGTGGTGATATCCGAGTTTAAAGTTTGA
1 ATTTGCA--T--A-TT-CTCGGTGGTGATATCCGAGTTTAAAATTTGA
* * *
7605304 ATTTGTATTTTCTCGATGGTGATAT
1 ATTTGCATATTCTCGGTGGTGATAT
7605329 TCAAGTTTCC
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
42 19 0.32
43 2 0.03
44 1 0.02
46 2 0.03
47 2 0.03
48 34 0.57
ACGTcount: A:0.23, C:0.11, G:0.21, T:0.44
Consensus pattern (42 bp):
ATTTGCATATTCTCGGTGGTGATATCCGAGTTTAAAATTTGA
Found at i:7605284 original size:48 final size:48
Alignment explanation
Indices: 7605213--7605313 Score: 150
Period size: 48 Copynumber: 2.1 Consensus size: 48
7605203 TATCTGAAGA
* *
7605213 CATTTGCATATTCTCGGTGGTGATATCTGAGTTTAAAATTTGAATTTG
1 CATTTGCATATTCTCAGTGGTGATATCCGAGTTTAAAATTTGAATTTG
*
7605261 CATTTGCAT-TTCCTCAGTGGTGATATCCGAGTTTAAAGTTTGAATTTG
1 CATTTGCATATT-CTCAGTGGTGATATCCGAGTTTAAAATTTGAATTTG
*
7605309 TATTT
1 CATTT
7605314 TCTCGATGGT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
47 2 0.04
48 46 0.96
ACGTcount: A:0.24, C:0.12, G:0.20, T:0.45
Consensus pattern (48 bp):
CATTTGCATATTCTCAGTGGTGATATCCGAGTTTAAAATTTGAATTTG
Found at i:7605496 original size:49 final size:50
Alignment explanation
Indices: 7605441--7605678 Score: 220
Period size: 49 Copynumber: 4.8 Consensus size: 50
7605431 AATGGTTTAA
*
7605441 TTTAAAGTTGTTGAGCCTCTATTGAGAGAAGCTTTTTTCAAGAT-AGATT
1 TTTAAAGTTGTTGAGCCTCTGTTGAGAGAAGCTTTTTTCAAGATAAGATT
* * *
7605490 TTTAAAGTTGTTAAGCCTCTGTTGAGATAAGTTCTTTTTCAAGAT-AGAATT
1 TTTAAAGTTGTTGAGCCTCTGTTGAGAGAAGCT-TTTTTCAAGATAAG-ATT
** * * *
7605541 TTTAAAGTTGTTGAGCCTCTACTGA-AGGGAGC-TTTTTCTAAAATGAGA-T
1 TTTAAAGTTGTTGAGCCTCTGTTGAGA-GAAGCTTTTTTC-AAGATAAGATT
* * * *
7605590 TTTAAAGTTGTTAAGCCTCTGCTGATATG-AGC-TTTTTCAAGATAAAATT
1 TTTAAAGTTGTTGAGCCTCTGTTGAGA-GAAGCTTTTTTCAAGATAAGATT
* * *
7605639 TTTAAAAGTTATTGAGCCTTTGTTGAGAAAAGCCTTTTTT
1 TTT-AAAGTTGTTGAGCCTCTGTTGAGAGAAG-CTTTTTT
7605679 AGATTTTAAA
Statistics
Matches: 155, Mismatches: 23, Indels: 19
0.79 0.12 0.10
Matches are distributed among these distances:
48 6 0.04
49 72 0.46
50 42 0.27
51 30 0.19
52 5 0.03
ACGTcount: A:0.29, C:0.11, G:0.19, T:0.41
Consensus pattern (50 bp):
TTTAAAGTTGTTGAGCCTCTGTTGAGAGAAGCTTTTTTCAAGATAAGATT
Found at i:7605676 original size:100 final size:99
Alignment explanation
Indices: 7605441--7605677 Score: 293
Period size: 100 Copynumber: 2.4 Consensus size: 99
7605431 AATGGTTTAA
* *
7605441 TTTAAAGTTGTTGAGCCTCTATTGAGAGAAGCTTTTTTCAAGATAGATTTTTAAAGTTGTTAAGC
1 TTTAAAGTTGTTGAGCCTCTATTGAGAGAAGCCTTTTTCAAAATAGATTTTTAAAGTTGTTAAGC
* *
7605506 CTCTGTTGAGATAAGTTCTTTTTCAAGATAGAATT
66 CTCTGCTGAGATAAG-TCTTTTTCAAGATAAAATT
* *
7605541 TTTAAAGTTGTTGAGCCTCTACTGA-AGGGAG-CTTTTTCTAAAATGAGA-TTTTAAAGTTGTTA
1 TTTAAAGTTGTTGAGCCTCTATTGAGA-GAAGCCTTTTTC-AAAAT-AGATTTTTAAAGTTGTTA
* *
7605603 AGCCTCTGCTGATATGAG-CTTTTTCAAGATAAAATT
63 AGCCTCTGCTGAGATAAGTCTTTTTCAAGATAAAATT
* * * *
7605639 TTTAAAAGTTATTGAGCCTTTGTTGAGAAAAGCCTTTTT
1 TTT-AAAGTTGTTGAGCCTCTATTGAGAGAAGCCTTTTT
7605678 TAGATTTTAA
Statistics
Matches: 117, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
98 20 0.17
99 27 0.23
100 67 0.57
101 3 0.03
ACGTcount: A:0.29, C:0.11, G:0.19, T:0.41
Consensus pattern (99 bp):
TTTAAAGTTGTTGAGCCTCTATTGAGAGAAGCCTTTTTCAAAATAGATTTTTAAAGTTGTTAAGC
CTCTGCTGAGATAAGTCTTTTTCAAGATAAAATT
Found at i:7607087 original size:15 final size:15
Alignment explanation
Indices: 7607068--7607102 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
7607058 TGGATTTTTT
7607068 TTTATTTTT-TAATA
1 TTTATTTTTATAATA
7607082 TATTATTTTTATAATA
1 T-TTATTTTTATAATA
7607098 TTTAT
1 TTTAT
7607103 GCATGTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 1 0.05
15 12 0.63
16 6 0.32
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTATTTTTATAATA
Found at i:7607218 original size:20 final size:22
Alignment explanation
Indices: 7607179--7607223 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
7607169 GATAATTCTT
7607179 AAAATAAACTTTAAAAAATAAA
1 AAAATAAACTTTAAAAAATAAA
*
7607201 AAAATAAA-TTT-AATAATAAA
1 AAAATAAACTTTAAAAAATAAA
7607221 AAA
1 AAA
7607224 TTAATAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 11 0.50
21 3 0.14
22 8 0.36
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (22 bp):
AAAATAAACTTTAAAAAATAAA
Found at i:7612883 original size:99 final size:98
Alignment explanation
Indices: 7612712--7613031 Score: 394
Period size: 99 Copynumber: 3.2 Consensus size: 98
7612702 AACAGATAAA
* * *
7612712 ATTTTTAAAGTTGTTGAACCTCTGCTT-AGAGGAGTCATTTTCAAGAGATTTTTAAAGTTGTTAA
1 ATTTTTAAAGTTGTTGAACCTCT-ATTGAGAGGAGCCATTTTCAAGAGATTTTTAAAGTTGTTGA
* **
7612776 ACCTCTGTTGAAAGGAACATTTTTCAAGATATGAG
65 ACCTCTGTTGAAA-GAGCCCTTTTCAAGATATGAG
* *
7612811 ATTTTTAAAGTTGTTGAACCTCTATTGAAAGGAGCCA-TTTCTAAGAGCTTTTTAAAGTTGTTGA
1 ATTTTTAAAGTTGTTGAACCTCTATTGAGAGGAGCCATTTTC-AAGAGATTTTTAAAGTTGTTGA
*
7612875 ACCTCTGTTGAGAAGAGCCCTTTTCAAAATATGAG
65 ACCTCTGTTGA-AAGAGCCCTTTTCAAGATATGAG
* * * * * * *
7612910 ATTTTTAAAGTTGTTGAACCTTTACTGAGAGAAACCTTTTTCAAGAGATTTTTAAAATTGTTGAC
1 ATTTTTAAAGTTGTTGAACCTCTATTGAGAGGAGCCATTTTCAAGAGATTTTTAAAGTTGTTGAA
* * *
7612975 CCTTTGTTGAGATGAGCCCTTTTCATGATATGAG
66 CCTCTGTTGA-AAGAGCCCTTTTCAAGATATGAG
*
7613009 A-TTTTAAAGTTGTTGAATCTCTA
1 ATTTTTAAAGTTGTTGAACCTCTA
7613032 CTAAGAAAAA
Statistics
Matches: 193, Mismatches: 24, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
98 26 0.13
99 161 0.83
100 6 0.03
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.39
Consensus pattern (98 bp):
ATTTTTAAAGTTGTTGAACCTCTATTGAGAGGAGCCATTTTCAAGAGATTTTTAAAGTTGTTGAA
CCTCTGTTGAAAGAGCCCTTTTCAAGATATGAG
Found at i:7613186 original size:46 final size:47
Alignment explanation
Indices: 7612714--7614980 Score: 1385
Period size: 47 Copynumber: 47.8 Consensus size: 47
7612704 CAGATAAAAT
* ** *
7612714 TTTTAAAGTTGTTGAACCTCTGCTTAGAGGAGTCATTTTCA-A-GAGA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGA-GAAACTTTTTCAGATGAGA
* * * *
7612760 TTTTTAAAGTTGTTAAACCTCTGTTGAAAGGAACATTTTTCAAGATATGAGA
1 -TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAAC-TTTTTC-AG--ATGAGA
** * * * ** *
7612812 TTTTTAAAGTTGTTGAACCTCTATTGAAAGGAGCCATTTCTA-A-GAGCT
1 -TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACTTTTTC-AGATGAG-A
* ** * *
7612860 TTTTAAAGTTGTTGAACCTCTGTTGAGAAGAGCCCTTTTCAAAATATGAGA
1 TTTTAAAGTTGTTGAACCTCTGCTGAG-AGAAACTTTTTC---AGATGAGA
* *
7612911 TTTTTAAAGTTGTTGAACCTTTACTGAGAGAAACCTTTTTCA-A-GAGA
1 -TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAA-CTTTTTCAGATGAGA
* * * * ** *
7612958 TTTTTAAAATTGTTGACCCTTTGTTGAGATGAGCCCTTTTCATGATATGAGA
1 -TTTTAAAGTTGTTGAACCTCTGCTGAGA-GAAACTTTTTCA-G--ATGAGA
* * * *
7613010 TTTTAAAGTTGTTGAATCTCTACTAAGAAAAACTTTTTCAGATGAGA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACTTTTTCAGATGAGA
* ** * * * ** *
7613057 TTTTAAAGTTATTTTACATCTGCTGAGAGGAGCTTTTTCA-AAAAAA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACTTTTTCAGATGAGA
* * * * *
7613103 TTTTAAAAGTTGTTAAACCTCTGCTAATG-GGAGCTTTTTCAGATAAGA
1 TTTT-AAAGTTGTTGAACCTCTGCTGA-GAGAAACTTTTTCAGATGAGA
* *
7613151 TTTT-AAGTTGTTGTACCTCTACTGAGAGAAACTTTTTCA-A-GAGAA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACTTTTTCAGATGAG-A
* * *
7613196 TTTTAAAATTGTTGAACCTCTACTGAGAGAAACCCTTTTCATGACATGAGA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAA-CTTTTTCA-G--ATGAGA
* * * * * *
7613247 TTTTAAAATTATTAAACCTCTACTGAGAGAAGCGCTTTTCATGATATGAGA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAAC-TTTTTCA-G--ATGAGA
* * * ** *
7613298 TTTTAAAGTTGTTGAACCTTTGCTAAGAGAAA-TTTTTCAAAAAAAA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACTTTTTCAGATGAGA
* * * * ** *
7613344 TTTTAAAGTTATTGAACCTTTGCTGAAAGAAGCTTTTT-A-AAAAAA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACTTTTTCAGATGAGA
*** * * * * * *
7613389 AAATAAAATTATTGAGCTTCTGCT-A-AGAAGAGCCTTTT-A-A--A-C
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAA-A-CTTTTTCAGATGAGA
* * * *
7613431 TTTCAAAAATATCGATTGAACTTCTACTGAGAGAAACTTTTTCAGATGAGA
1 TTT-TAAAGT-T-G-TTGAACCTCTGCTGAGAGAAACTTTTTCAGATGAGA
* * *
7613482 TTTTAAAGTTGTTAAACCTCTGCTAAGAAAAACTTTTTCA-A-GAGAA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACTTTTTCAGATGAG-A
** * *
7613528 TTTTAAAGTTGTTGTGCCTCTACTGAGA-AGAGCTTTTTCAGATGAGA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGA-AACTTTTTCAGATGAGA
* * *
7613575 TTTTAAAGTTGTT-ATGCCTCTGCTAAGAAGAGA-TTTTTCA-A-GAGAA
1 TTTTAAAGTTGTTGA-ACCTCTGCTGAG-AGAAACTTTTTCAGATGAG-A
* * ** * * *
7613621 TTTTAAAATTATTGTGCCTCTACTGAGAGGAACTTTTTCAGATGAAA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACTTTTTCAGATGAGA
* *
7613668 TTTTAAAGTTGTTGAACCTCTGATGAGA-AGAGCTTTTTCA-A-GAGAA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGA-AACTTTTTCAGATGAG-A
* * * * * *
7613714 TTTTAAAGTTATT-ATGCCTCTGCTGAGAGGAGCTTTTCCAAATGAGA
1 TTTTAAAGTTGTTGA-ACCTCTGCTGAGAGAAACTTTTTCAGATGAGA
* * * * *
7613761 TTTTAAAGTTGTTGAACCTCCGCTAAGAGGAGCTTTTTTA-A-GAGAA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACTTTTTCAGATGAG-A
*
7613807 TTTTAAAATTG-TG--CCTCTGCTGA-A-AAGAGCTTTTTCAGATGAGA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAA-A-CTTTTTCAGATGAGA
** * * *
7613851 TTTTAAAGTTGTTGTGCCTCTACTGAGACG-AGCTTTTTCA-A-GAAAA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGA-GAAACTTTTTCAGATG-AGA
* * ** * *
7613897 TTTTAAAGTTGTTGAGCCTCTGCTGAGGGAAGTTTTTTCATATAAGAA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACTTTTTCAGATGAG-A
* * * * *
7613945 TTTTAAAATTATTGAACCTCTACTAAGAGAAACCCTTTTCATGATATGAGA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAA-CTTTTTCA-G--ATGAGA
* * * ** *
7613996 TTTTAAAGTGGTTGAACCTCAGTTGAGAGGAGCCTTTTTCATGATATGAAA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGA-GAAACTTTTTCA-G--ATGAGA
* * *
7614047 TTTTAAAGTTGTTAAACCTCTGCTAAGAGAAACCCTTTTCATGATATGAGA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAA-CTTTTTCA-G--ATGAGA
* * *
7614098 TTTTAAAGTTGTTGAACCTCTGTTGAGAGGAGCTTTTTCA-A-GAGAA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACTTTTTCAGATGAG-A
* * * * * * * * *
7614144 TTTTAAAATTATTGTACCTCTACTGAAAGGAGCTTTTTCAGATAAAA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACTTTTTCAGATGAGA
* * *
7614191 TTTTAAAGTTGTTGAACCTCTACTGAGATG-AACTTTTTCAAAAGA-A
1 TTTTAAAGTTGTTGAACCTCTGCTGAGA-GAAACTTTTTCAGATGAGA
* **
7614237 TTTTAAAGTTATTGTGCCTCTGCTGAGAGAAACTTTTTCAGATGAGA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACTTTTTCAGATGAGA
*
7614284 TTTTAAAGTTGTT-ATACTTCTGCTGA-A-AAGAGCTTTTTCA-A-GAGAA
1 TTTTAAAGTTGTTGA-ACCTCTGCTGAGAGAA-A-CTTTTTCAGATGAG-A
* *
7614330 TTTTAAAATTGTTGAACCTCTGCTGAGGGAAACTTTTTCAGATGAGA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACTTTTTCAGATGAGA
** * * * *
7614377 TTTTAAAGTTGTTGAACCTCTATTGAAAAAAACTTTTTCAAAAGA-A
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACTTTTTCAGATGAGA
* *
7614423 TTTTAAAGTT-TT--CCCTTTGCTGAGAGAAACTTTTTCAGATGAGA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACTTTTTCAGATGAGA
* ** * *
7614467 TTTTAAAATTGTT-ATGTCTCTGCTGAGAAAAATTTTTTCA-A-GAGAA
1 TTTTAAAGTTGTTGA-ACCTCTGCTGAGAGAAACTTTTTCAGATGAG-A
* * *
7614513 TTTTAAAGTTGTT---CCTCAGCTGAGAGAAGCTTTTTCAGATGAAA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACTTTTTCAGATGAGA
* *
7614557 TTTTAAAGTTGTTGAACTTCTGCTGAGAGAAGCTTTTTCAGATGAGA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACTTTTTCAGATGAGA
* * * * *
7614604 TTTTAAAGTTATTGAACCTCTGCTGATAGGAGCTTTTTTA-A-GAGAA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACTTTTTCAGATGAG-A
* * *
7614650 TTTTAAAATTGTTGTACCTCTGCTGAAAGAAACTTTTTCAGATGAGA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACTTTTTCAGATGAGA
* * * * * *
7614697 TTTTAAAGTTATTGTACCTCTACTGAAAGGAGA-TTTTTC-GA-AAGAA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGA-GAAACTTTTTCAGATGAG-A
* * * * *
7614743 TTTTAAAATTGTTGAACCTTTGCTAAGAGGAGCTATTTTCATGATATGAGA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACT-TTTTCA-G--ATGAGA
* * * *
7614794 TTTTAAAGTTGTTAAACCTCTACTGAGAGGAACCCTTTTCA-A-GAGA
1 TTTTAAAGTTGTTGAACCTCTGCTGAGA-GAAACTTTTTCAGATGAGA
* *
7614840 TTTTTAAAGTTGTTGAACCTCTGCTGAGAGAAGTCATTTTCATGATATGAGA
1 -TTTTAAAGTTGTTGAACCTCTGCTGAGAGAA-ACTTTTTCA-G--ATGAGA
* * *
7614892 TTTTAAAATTGTTGAACATCTGCTGAGAAGAAACCTTTTCATGATATGAGA
1 TTTTAAAGTTGTTGAACCTCTGCTGAG-AGAAACTTTTTCA-G--ATGAGA
*
7614943 TTTTAAAGTTGTTAAACCTCTGCTGAGAGAAACTTTTT
1 TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACTTTTT
7614981 AAAAAAAAAA
Statistics
Matches: 1762, Mismatches: 324, Indels: 265
0.75 0.14 0.11
Matches are distributed among these distances:
41 1 0.00
42 1 0.00
43 66 0.04
44 41 0.02
45 86 0.05
46 456 0.26
47 578 0.33
48 78 0.04
49 18 0.01
50 34 0.02
51 309 0.18
52 94 0.05
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (47 bp):
TTTTAAAGTTGTTGAACCTCTGCTGAGAGAAACTTTTTCAGATGAGA
Found at i:7613190 original size:93 final size:93
Alignment explanation
Indices: 7612709--7614988 Score: 1104
Period size: 93 Copynumber: 24.1 Consensus size: 93
7612699 GAAAACAGAT
* * *
7612709 AAAATTTTTAAAGTTGTTGAACCTCTGCTTAGAGGAGTCATTTTCA-A-GAGATTTTTAAAGTTG
1 AAAAATTTTAAAGTTGTTGAACCTCTGCTAAGAGGAG-CTTTTTCAGATGAGA-TTTTAAAGTTG
* * * *
7612772 TTAAACCTCTGTTGAAAGGAACATTTTTCAA
64 TTGAACCTCTGCTGAGAGAAAC-TTTTTCAA
* ** ** *
7612803 GATATGAGATTTTTAAAGTTGTTGAACCTCTATTGAA-AGGAGCCATTTCTA-A-GAGCTTTTTA
1 -A-A--A-AATTTTAAAGTTGTTGAACCTCTGCT-AAGAGGAGCTTTTTC-AGATGAG-ATTTTA
* ** *
7612865 AAGTTGTTGAACCTCTGTTGAGAAGAGCCCTTTTCAA
58 AAGTTGTTGAACCTCTGCTGAG-AGAAACTTTTTCAA
* * * * *
7612902 AATATGAGATTTTTAAAGTTGTTGAACCTTTACTGAGAGAAACCTTTTTCA-A-GAGATTTTTAA
1 AA-A--A-A-TTTTAAAGTTGTTGAACCTCTGCTAAGAG-GAGCTTTTTCAGATGAGA-TTTTAA
* * * * ** *
7612965 AATTGTTGACCCTTTGTTGAGATGAGCCCTTTTCATGA
59 AGTTGTTGAACCTCTGCTGAGA-GAAACTTTTTCA--A
* * * * ** * *
7613003 TATGAGATTTTAAAGTTGTTGAATCTCTACTAAGAAAAACTTTTTCAGATGAGATTTTAAAGTTA
1 -A-AAAATTTTAAAGTTGTTGAACCTCTGCTAAGAGGAGCTTTTTCAGATGAGATTTTAAAGTTG
** * * *
7613068 TTTTACATCTGCTGAGAGGAGCTTTTTCAA
64 TTGAACCTCTGCTGAGAGAAACTTTTTCAA
* *
7613098 AAAAATTTTAAAAGTTGTTAAACCTCTGCTAATG-GGAGCTTTTTCAGATAAGATTTT-AAGTTG
1 AAAAATTTT-AAAGTTGTTGAACCTCTGCTAA-GAGGAGCTTTTTCAGATGAGATTTTAAAGTTG
* *
7613161 TTGTACCTCTACTGAGAGAAACTTTTTCAA
64 TTGAACCTCTGCTGAGAGAAACTTTTTCAA
* * * * * * * * *
7613191 GAGAATTTTAAAATTGTTGAACCTCTACTGAGAGAAACCCTTTTCATGACATGAGATTTTAAAAT
1 AAAAATTTTAAAGTTGTTGAACCTCTGCTAAGAG-GAGCTTTTTCA-G--ATGAGATTTTAAAGT
* * * * *
7613256 TATTAAACCTCTACTGAGAGAAGCGCTTTTCATGA
62 TGTTGAACCTCTGCTGAGAGAAAC-TTTTTCA--A
* * * ** * ** * *
7613291 TATGAGATTTTAAAGTTGTTGAACCTTTGCTAAGA-GAAATTTTTCAAAAAAAATTTTAAAGTTA
1 -A-AAAATTTTAAAGTTGTTGAACCTCTGCTAAGAGGAGCTTTTTCAGATGAGATTTTAAAGTTG
* * *
7613355 TTGAACCTTTGCTGAAAGAAGCTTTTT-AA
64 TTGAACCTCTGCTGAGAGAAACTTTTTCAA
*** * * * * * * * * *
7613384 AAAAAAAATAAAATTATTGAGCTTCTGCTAAGAAGAGCCTTTT-A-A--A-CTTTCAAAAATATC
1 AAAAATTTTAAAGTTGTTGAACCTCTGCTAAGAGGAGCTTTTTCAGATGAGATTT-TAAAGT-T-
* *
7613444 GATTGAACTTCTACTGAGAGAAACTTTTTCAGA
63 G-TTGAACCTCTGCTGAGAGAAACTTTTTCA-A
** * * ** *
7613477 TGAGATTTTAAAGTTGTTAAACCTCTGCTAAGAAAAACTTTTTCA-A-GAGAATTTTAAAGTTGT
1 AAAAATTTTAAAGTTGTTGAACCTCTGCTAAGAGGAGCTTTTTCAGATGAG-ATTTTAAAGTTGT
** * *
7613540 TGTGCCTCTACTGAGA-AGAGCTTTTTCAGA
65 TGAACCTCTGCTGAGAGA-AACTTTTTCA-A
** * * * * * *
7613570 TGAGATTTTAAAGTTGTT-ATGCCTCTGCTAAGAAGAGATTTTTCA-A-GAGAATTTTAAAATTA
1 AAAAATTTTAAAGTTGTTGA-ACCTCTGCTAAGAGGAGCTTTTTCAGATGAG-ATTTTAAAGTTG
** * *
7613632 TTGTGCCTCTACTGAGAGGAACTTTTTCAGA
64 TTGAACCTCTGCTGAGAGAAACTTTTTCA-A
** * * * *
7613663 TGAAATTTTAAAGTTGTTGAACCTCTGATGAGAAGAGCTTTTTCA-A-GAGAATTTTAAAGTTAT
1 AAAAATTTTAAAGTTGTTGAACCTCTGCTAAGAGGAGCTTTTTCAGATGAG-ATTTTAAAGTTGT
* * * *
7613726 T-ATGCCTCTGCTGAGAGGAGCTTTTCCAA
65 TGA-ACCTCTGCTGAGAGAAACTTTTTCAA
* * * * *
7613755 ATGAGATTTTAAAGTTGTTGAACCTCCGCTAAGAGGAGCTTTTTTA-A-GAGAATTTTAAAATTG
1 A-AAAATTTTAAAGTTGTTGAACCTCTGCTAAGAGGAGCTTTTTCAGATGAG-ATTTTAAAGTTG
7613818 -TG--CCTCTGCTGA-A-AAGAGCTTTTTCAGA
64 TTGAACCTCTGCTGAGAGAA-A-CTTTTTCA-A
** * ** * * * *
7613846 TGAGATTTTAAAGTTGTTGTGCCTCTACTGAGACGAGCTTTTTCA-A-GAAAATTTTAAAGTTGT
1 AAAAATTTTAAAGTTGTTGAACCTCTGCTAAGAGGAGCTTTTTCAGATG-AGATTTTAAAGTTGT
* * **
7613909 TGAGCCTCTGCTGAGGGAAGTTTTTTCATA
65 TGAACCTCTGCTGAGAGAAACTTTTTCA-A
* * * * * * *
7613939 TAAGAATTTTAAAATTATTGAACCTCTACTAAGAGAAACCCTTTTCATGATATGAGATTTTAAAG
1 -AAAAATTTTAAAGTTGTTGAACCTCTGCTAAGAG-GAGCTTTTTCA-G--ATGAGATTTTAAAG
* * * **
7614004 TGGTTGAACCTCAGTTGAGAGGAGCCTTTTTCATGA
61 TTGTTGAACCTCTGCTGAGA-GAAACTTTTTCA--A
* * * * *
7614040 TATGAAATTTTAAAGTTGTTAAACCTCTGCTAAGAGAAACCCTTTTCATGATATGAGATTTTAAA
1 -A-AAAATTTTAAAGTTGTTGAACCTCTGCTAAGAG-GAGCTTTTTCA-G--ATGAGATTTTAAA
* * *
7614105 GTTGTTGAACCTCTGTTGAGAGGAGCTTTTTCAA
60 GTTGTTGAACCTCTGCTGAGAGAAACTTTTTCAA
* * * * * * * *
7614139 GAGAATTTTAAAATTATTGTACCTCTACTGAA-AGGAGCTTTTTCAGATAAAATTTTAAAGTTGT
1 AAAAATTTTAAAGTTGTTGAACCTCTGCT-AAGAGGAGCTTTTTCAGATGAGATTTTAAAGTTGT
*
7614203 TGAACCTCTACTGAGATG-AACTTTTTCAA
65 TGAACCTCTGCTGAGA-GAAACTTTTTCAA
* * ** * * *
7614232 AAGAATTTTAAAGTTATTGTGCCTCTGCTGAGAGAAACTTTTTCAGATGAGATTTTAAAGTTGTT
1 AAAAATTTTAAAGTTGTTGAACCTCTGCTAAGAGGAGCTTTTTCAGATGAGATTTTAAAGTTGTT
*
7614297 -ATACTTCTGCTGA-A-AAGAGCTTTTTCAA
66 GA-ACCTCTGCTGAGAGAA-A-CTTTTTCAA
* * * * *
7614325 GAGAATTTTAAAATTGTTGAACCTCTGCTGAG-GGAAACTTTTTCAGATGAGATTTTAAAGTTGT
1 AAAAATTTTAAAGTTGTTGAACCTCTGCTAAGAGG-AGCTTTTTCAGATGAGATTTTAAAGTTGT
** * *
7614389 TGAACCTCTATTGAAAAAAACTTTTTCAA
65 TGAACCTCTGCTGAGAGAAACTTTTTCAA
* * * * * * *
7614418 AAGAATTTTAAAGTT-TT--CCCTTTGCTGAGAGAAACTTTTTCAGATGAGATTTTAAAATTGTT
1 AAAAATTTTAAAGTTGTTGAACCTCTGCTAAGAGGAGCTTTTTCAGATGAGATTTTAAAGTTGTT
** * *
7614480 -ATGTCTCTGCTGAGAAAAATTTTTTCAA
66 GA-ACCTCTGCTGAGAGAAACTTTTTCAA
* * * * * *
7614508 GAGAATTTTAAAGTTGTT---CCTCAGCTGAGAGAAGCTTTTTCAGATGAAATTTTAAAGTTGTT
1 AAAAATTTTAAAGTTGTTGAACCTCTGCTAAGAGGAGCTTTTTCAGATGAGATTTTAAAGTTGTT
* *
7614570 GAACTTCTGCTGAGAGAAGCTTTTTCAGA
66 GAACCTCTGCTGAGAGAAACTTTTTCA-A
** * * * * * *
7614599 TGAGATTTTAAAGTTATTGAACCTCTGCTGATAGGAGCTTTTTTA-A-GAGAATTTTAAAATTGT
1 AAAAATTTTAAAGTTGTTGAACCTCTGCTAAGAGGAGCTTTTTCAGATGAG-ATTTTAAAGTTGT
* *
7614662 TGTACCTCTGCTGAAAGAAACTTTTTCAGA
65 TGAACCTCTGCTGAGAGAAACTTTTTCA-A
** * * * * * * *
7614692 TGAGATTTTAAAGTTATTGTACCTCTACTGAA-AGGAGATTTTTC-GA-AAGAATTTTAAAATTG
1 AAAAATTTTAAAGTTGTTGAACCTCTGCT-AAGAGGAGCTTTTTCAGATGAG-ATTTTAAAGTTG
* * * *
7614754 TTGAACCTTTGCTAAGAGGAGCTATTTTCATGA
64 TTGAACCTCTGCTGAGAGAAACT-TTTTCA--A
* * * * * * *
7614787 TATGAGATTTTAAAGTTGTTAAACCTCTACTGAGAGGAACCCTTTTCA-A-GAGATTTTTAAAGT
1 -A-AAAATTTTAAAGTTGTTGAACCTCTGCTAAGAGG-AGCTTTTTCAGATGAGA-TTTTAAAGT
* *
7614850 TGTTGAACCTCTGCTGAGAGAAGTCATTTTCATGA
62 TGTTGAACCTCTGCTGAGAGAA-ACTTTTTCA--A
* * * * * * * *
7614885 TATGAGATTTTAAAATTGTTGAACATCTGCTGAGAAGAAACCTTTTCATGATATGAGATTTTAAA
1 -A-AAAATTTTAAAGTTGTTGAACCTCTGCTAAG-AGGAGCTTTTTCA-G--ATGAGATTTTAAA
* *
7614950 GTTGTTAAACCTCTGCTGAGAGAAACTTTTTAAA
60 GTTGTTGAACCTCTGCTGAGAGAAACTTTTTCAA
7614984 AAAAA
1 AAAAA
7614989 AAAATTTAAG
Statistics
Matches: 1745, Mismatches: 332, Indels: 214
0.76 0.14 0.09
Matches are distributed among these distances:
87 3 0.00
88 6 0.00
89 3 0.00
90 199 0.11
91 69 0.04
92 40 0.02
93 646 0.37
94 99 0.06
95 21 0.01
96 28 0.02
97 132 0.08
98 148 0.08
99 167 0.10
100 28 0.02
101 19 0.01
102 133 0.08
103 4 0.00
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (93 bp):
AAAAATTTTAAAGTTGTTGAACCTCTGCTAAGAGGAGCTTTTTCAGATGAGATTTTAAAGTTGTT
GAACCTCTGCTGAGAGAAACTTTTTCAA
Found at i:7613267 original size:51 final size:51
Alignment explanation
Indices: 7613165--7613304 Score: 182
Period size: 51 Copynumber: 2.8 Consensus size: 51
7613155 AAGTTGTTGT
* * * *
7613165 ACCTCTACTGAGAGAAA-CTTTTTCA--AGA-GA-ATTTTAAAATTGTTGA
1 ACCTCTACTGAGAGAAACCCTTTTCATGACATGAGATTTTAAAATTATTAA
7613211 ACCTCTACTGAGAGAAACCCTTTTCATGACATGAGATTTTAAAATTATTAA
1 ACCTCTACTGAGAGAAACCCTTTTCATGACATGAGATTTTAAAATTATTAA
* * *
7613262 ACCTCTACTGAGAGAAGCGCTTTTCATGATATGAGATTTTAAA
1 ACCTCTACTGAGAGAAACCCTTTTCATGACATGAGATTTTAAA
7613305 GTTGTTGAAC
Statistics
Matches: 82, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
46 17 0.21
47 7 0.09
49 2 0.02
50 2 0.02
51 54 0.66
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.34
Consensus pattern (51 bp):
ACCTCTACTGAGAGAAACCCTTTTCATGACATGAGATTTTAAAATTATTAA
Done.