Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 42 of 117
Found at i:7613401 original size:45 final size:46
Alignment explanation
Indices: 7613309--7613416 Score: 116
Period size: 46 Copynumber: 2.4 Consensus size: 46
7613299 TTTAAAGTTG
** *
7613309 TTGAACCTTTGCTAAGAGAAATTTTTCAAAAAAAATTTTAAAGTTA
1 TTGAACCTTTGCTAAGAGAAATTTTTCAAAAAAAATAATAAAATTA
*
7613355 TTGAACCTTTGCTGAA-AGAAGCTTTTT-AAAAAAAA-AATAAAATTA
1 TTGAACCTTTGCT-AAGAGAA-ATTTTTCAAAAAAAATAATAAAATTA
*
7613400 TTG-AGCTTCTGCTAAGA
1 TTGAACCTT-TGCTAAGA
7613417 AGAGCCTTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
44 6 0.11
45 15 0.28
46 25 0.47
47 7 0.13
ACGTcount: A:0.43, C:0.10, G:0.13, T:0.34
Consensus pattern (46 bp):
TTGAACCTTTGCTAAGAGAAATTTTTCAAAAAAAATAATAAAATTA
Found at i:7615101 original size:10 final size:9
Alignment explanation
Indices: 7615086--7615112 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
7615076 TTGTCGAACC
7615086 AAAAAAAAT
1 AAAAAAAAT
7615095 AAAAAAAAT
1 AAAAAAAAT
7615104 AAAAAAAAT
1 AAAAAAAAT
7615113 TTCTCTTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:7615221 original size:3 final size:3
Alignment explanation
Indices: 7615213--7615248 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
7615203 TGTAAACATA
7615213 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
7615249 TATTTAATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:7615277 original size:8 final size:9
Alignment explanation
Indices: 7615255--7615299 Score: 58
Period size: 9 Copynumber: 5.0 Consensus size: 9
7615245 TATTTATTTA
7615255 ATTTTTTTC
1 ATTTTTTTC
7615264 -TCTTTTTTC
1 AT-TTTTTTC
7615273 ATTTTTTTC
1 ATTTTTTTC
7615282 ATTTTTCTTC
1 ATTTTT-TTC
7615292 -TTTTTTTC
1 ATTTTTTTC
7615300 CTCCTTTCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
8 4 0.12
9 25 0.76
10 4 0.12
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.78
Consensus pattern (9 bp):
ATTTTTTTC
Found at i:7615285 original size:27 final size:27
Alignment explanation
Indices: 7615246--7615299 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
7615236 TATTATTATT
7615246 ATTTATTTAATTTTT-TTCTCTTTTTTC
1 ATTTATTTAATTTTTCTTCT-TTTTTTC
* *
7615273 ATTTTTTTCATTTTTCTTCTTTTTTTC
1 ATTTATTTAATTTTTCTTCTTTTTTTC
7615300 CTCCTTTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.76
Consensus pattern (27 bp):
ATTTATTTAATTTTTCTTCTTTTTTTC
Found at i:7615307 original size:19 final size:19
Alignment explanation
Indices: 7615255--7615309 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 19
7615245 TATTTATTTA
*
7615255 ATTTTTTT-CTCTTTTTTC
1 ATTTTTTTCCTCTTTCTTC
* *
7615273 ATTTTTTTCATTTTTCTTC
1 ATTTTTTTCCTCTTTCTTC
7615292 -TTTTTTTCCTCCTTTCTT
1 ATTTTTTTCCT-CTTTCTT
7615310 TTTCCTTATT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
18 17 0.57
19 13 0.43
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (19 bp):
ATTTTTTTCCTCTTTCTTC
Found at i:7615312 original size:26 final size:27
Alignment explanation
Indices: 7615278--7615328 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
7615268 TTTTCATTTT
* *
7615278 TTTCATTTTTCTTCTTTTT-TTCCTCC
1 TTTCATTTTCCTTATTTTTCTTCCTCC
*
7615304 TTTCTTTTTCCTTATTTTTCTTCCT
1 TTTCATTTTCCTTATTTTTCTTCCT
7615329 TATCCGATTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 16 0.76
27 5 0.24
ACGTcount: A:0.04, C:0.25, G:0.00, T:0.71
Consensus pattern (27 bp):
TTTCATTTTCCTTATTTTTCTTCCTCC
Found at i:7615683 original size:20 final size:21
Alignment explanation
Indices: 7615658--7615696 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
7615648 AATACACCTA
*
7615658 CAAAAACACA-AAAAAAAAAC
1 CAAAAAAACATAAAAAAAAAC
7615678 CAAAAAAACATAAAAAAAA
1 CAAAAAAACATAAAAAAAA
7615697 GAAAAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.82, C:0.15, G:0.00, T:0.03
Consensus pattern (21 bp):
CAAAAAAACATAAAAAAAAAC
Found at i:7615702 original size:20 final size:20
Alignment explanation
Indices: 7615659--7615703 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
7615649 ATACACCTAC
* *
7615659 AAAAACACAAAAAAAAAACC
1 AAAAAAACAAAAAAAAAACA
* *
7615679 AAAAAAACATAAAAAAAAGA
1 AAAAAAACAAAAAAAAAACA
7615699 AAAAA
1 AAAAA
7615704 TTTTTGATCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.84, C:0.11, G:0.02, T:0.02
Consensus pattern (20 bp):
AAAAAAACAAAAAAAAAACA
Found at i:7621507 original size:28 final size:30
Alignment explanation
Indices: 7621468--7621527 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 30
7621458 AATTAATAAA
*
7621468 TTTAAAATTTAA-GTAATATATTAAATATT
1 TTTAAAATTTAATGTAATATATTAAACATT
* *
7621497 TTTAAAA-TTAATTTATTATATTAAACATT
1 TTTAAAATTTAATGTAATATATTAAACATT
7621526 TT
1 TT
7621528 ATTATAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 4 0.15
29 23 0.85
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (30 bp):
TTTAAAATTTAATGTAATATATTAAACATT
Found at i:7622526 original size:37 final size:32
Alignment explanation
Indices: 7622450--7622524 Score: 132
Period size: 32 Copynumber: 2.3 Consensus size: 32
7622440 ACCTTAGAGA
7622450 AAGAATAAAATTTTATGAGACCCAACTAAACT
1 AAGAATAAAATTTTATGAGACCCAACTAAACT
*
7622482 AAGAATAAAATTTTATGAGACCTAACTAAACT
1 AAGAATAAAATTTTATGAGACCCAACTAAACT
*
7622514 AAGGATAAAAT
1 AAGAATAAAAT
7622525 AATAAATGCA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.52, C:0.12, G:0.11, T:0.25
Consensus pattern (32 bp):
AAGAATAAAATTTTATGAGACCCAACTAAACT
Found at i:7625243 original size:31 final size:34
Alignment explanation
Indices: 7625170--7625244 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 34
7625160 CTCCTATTTT
* *
7625170 ATTTTTTTTTTACTTTTTTATAAAATATCTTAAA
1 ATTTTTATTTTAATTTTTTATAAAATATCTTAAA
* *
7625204 A-TTATATTTTAATTTTTT-T-GAATATC-TAAA
1 ATTTTTATTTTAATTTTTTATAAAATATCTTAAA
7625234 ATTTTTATTTT
1 ATTTTTATTTT
7625245 TTATATTTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
30 5 0.14
31 14 0.40
32 1 0.03
33 14 0.40
34 1 0.03
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (34 bp):
ATTTTTATTTTAATTTTTTATAAAATATCTTAAA
Found at i:7625250 original size:22 final size:22
Alignment explanation
Indices: 7625225--7625269 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
7625215 ATTTTTTTGA
7625225 ATATCTAAAATTTTTATTTTTT
1 ATATCTAAAATTTTTATTTTTT
* *
7625247 ATATTTAAATTTTTTATTTTTT
1 ATATCTAAAATTTTTATTTTTT
7625269 A
1 A
7625270 ACATTAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (22 bp):
ATATCTAAAATTTTTATTTTTT
Found at i:7625276 original size:22 final size:22
Alignment explanation
Indices: 7625230--7625278 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
7625220 TTTGAATATC
*
7625230 TAAAATTTTTATTTTTTATATT
1 TAAAATTTTTATTTTTTATAAT
*
7625252 TAAATTTTTTATTTTTTA-ACAT
1 TAAAATTTTTATTTTTTATA-AT
7625274 TAAAA
1 TAAAA
7625279 ATCATAAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 1 0.04
22 22 0.96
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (22 bp):
TAAAATTTTTATTTTTTATAAT
Found at i:7628078 original size:21 final size:20
Alignment explanation
Indices: 7628054--7628095 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
7628044 TTAATTTATA
7628054 AATTGATTATAAATTATAGTT
1 AATTGATTAT-AATTATAGTT
* *
7628075 AATTTATTATAGTTATAGTT
1 AATTGATTATAATTATAGTT
7628095 A
1 A
7628096 CAGAGAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (20 bp):
AATTGATTATAATTATAGTT
Found at i:7629456 original size:137 final size:137
Alignment explanation
Indices: 7629267--7629522 Score: 431
Period size: 137 Copynumber: 1.9 Consensus size: 137
7629257 TTTTATCAAT
* * *
7629267 GATTGCAAGAGAAAGTTCTTAAGTCTTTTTTTTATAATGTTGATAGGACAATTTTTATAAGTTTA
1 GATTGCAACAGAAAGGTCTTAAGTCATTTTTTTATAATGTTGATAGGACAATTTTTATAAGTTTA
* *
7629332 AATCGAATATAATTAATTTTTGGGCCCCTAAATAAGCTTACAAGACATCTTTTATGTGGACACCA
66 AATCGAACATAATTAATTTTTGGGCCCCTAAATAAGCTTACAAGACATCATTTATGTGGACACCA
7629397 TAGGATA
131 TAGGATA
* *
7629404 GATTGCAACAGAAAGGTCTTCAGTCATTTTTTTATAATGTTGATAGGACAATTTTTATAAGTTTT
1 GATTGCAACAGAAAGGTCTTAAGTCATTTTTTTATAATGTTGATAGGACAATTTTTATAAGTTTA
* *
7629469 AATCGTACATAATTAATTTTTGGGCCCCTAGATAAGCTTACAAGACATCATTTA
66 AATCGAACATAATTAATTTTTGGGCCCCTAAATAAGCTTACAAGACATCATTTA
7629523 ATTTTTCATG
Statistics
Matches: 110, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
137 110 1.00
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (137 bp):
GATTGCAACAGAAAGGTCTTAAGTCATTTTTTTATAATGTTGATAGGACAATTTTTATAAGTTTA
AATCGAACATAATTAATTTTTGGGCCCCTAAATAAGCTTACAAGACATCATTTATGTGGACACCA
TAGGATA
Found at i:7629603 original size:48 final size:45
Alignment explanation
Indices: 7629551--7629642 Score: 139
Period size: 45 Copynumber: 2.0 Consensus size: 45
7629541 AAAGAGAGTA
*
7629551 ATTACAAGGCTTCATTTATTTTTTTTTATCCGCCAGAAAAAGACATTC
1 ATTACAAGACTTCA--T-TTTTTTTTTATCCGCCAGAAAAAGACATTC
*
7629599 ATTACAAGACTTCATTTTTTTTTTATCTGCCAGAAAAAGACATT
1 ATTACAAGACTTCATTTTTTTTTTATCCGCCAGAAAAAGACATT
7629643 TATTTATATG
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
45 28 0.67
46 1 0.02
48 13 0.31
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (45 bp):
ATTACAAGACTTCATTTTTTTTTTATCCGCCAGAAAAAGACATTC
Found at i:7629633 original size:45 final size:45
Alignment explanation
Indices: 7629506--7629642 Score: 141
Period size: 48 Copynumber: 3.0 Consensus size: 45
7629496 CTAGATAAGC
* * * * * *
7629506 TTACAAGACATCATTTAATTTTTCATGTGCCA-AAGAAAGAGAGTAA
1 TTACAAGACTTCATTT-TTTTTTTATCTGCCAGAA-AAAGACATTAA
* * *
7629552 TTACAAGGCTTCATTTATTTTTTTTTATCCGCCAGAAAAAGACATTCA
1 TTACAAGACTTCA--T-TTTTTTTTTATCTGCCAGAAAAAGACATTAA
7629600 TTACAAGACTTCATTTTTTTTTTATCTGCCAGAAAAAGACATT
1 TTACAAGACTTCATTTTTTTTTTATCTGCCAGAAAAAGACATT
7629643 TATTTATATG
Statistics
Matches: 76, Mismatches: 11, Indels: 9
0.79 0.11 0.09
Matches are distributed among these distances:
45 28 0.37
46 12 0.16
48 32 0.42
49 4 0.05
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (45 bp):
TTACAAGACTTCATTTTTTTTTTATCTGCCAGAAAAAGACATTAA
Found at i:7630435 original size:2 final size:2
Alignment explanation
Indices: 7630428--7630465 Score: 60
Period size: 2 Copynumber: 19.0 Consensus size: 2
7630418 ACCACCAAAT
7630428 TA TA TA TA CT- TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7630466 AAAGTTAATG
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 1 0.03
2 32 0.94
3 1 0.03
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7631277 original size:2 final size:2
Alignment explanation
Indices: 7631258--7631296 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
7631248 TTATAATTTC
* * *
7631258 AT AT AT AG AT AT AG AT AT AT AC AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7631297 GTAAAAGAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (2 bp):
AT
Found at i:7632713 original size:34 final size:34
Alignment explanation
Indices: 7632675--7632740 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
7632665 AAAAAAGAAT
7632675 TAAAAAATAAAACTAATTGATTAAAATCAAAAAC
1 TAAAAAATAAAACTAATTGATTAAAATCAAAAAC
*
7632709 TAAAAAATAAAACTAATTTATTAAAATCAAAA
1 TAAAAAATAAAACTAATTGATTAAAATCAAAA
7632741 TATTGTATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.65, C:0.08, G:0.02, T:0.26
Consensus pattern (34 bp):
TAAAAAATAAAACTAATTGATTAAAATCAAAAAC
Found at i:7637480 original size:43 final size:43
Alignment explanation
Indices: 7637419--7637814 Score: 336
Period size: 43 Copynumber: 9.2 Consensus size: 43
7637409 TTTTTTTTGA
* * *
7637419 AAAAAAAAAAAAGC-TCCCCACAACTAAGGCTTTAAAACTTTT
1 AAAAAATAAAATGCTTCCCCACAACTAAGGCTTTGAAACTTTT
* * * *
7637461 AAAAAATAAAATGCTTCCCCACAACTAAGACATTGGAAGCTTTGG
1 AAAAAATAAAATGCTTCCCCACAACTAAGGC-TTTGAAACTTT-T
**** * * *
7637506 AACTTTTGAAAAATGC-TCCCCACAGCAAAGGCTTTGGAACTTTT
1 AAAAAAT--AAAATGCTTCCCCACAACTAAGGCTTTGAAACTTTT
* * * *
7637550 -GAAAATAAAATGCTTTCCTACAACTGAGGCTTTGAAACTTTT
1 AAAAAATAAAATGCTTCCCCACAACTAAGGCTTTGAAACTTTT
* *
7637592 GAAAAATAAAATGC-TCCCCACAACTAAGGTTTTGAAACTTTT
1 AAAAAATAAAATGCTTCCCCACAACTAAGGCTTTGAAACTTTT
* *** *
7637634 -AAAAATATAATGCTTCTGTACAACTAAGGCTTTGAAACTTTG
1 AAAAAATAAAATGCTTCCCCACAACTAAGGCTTTGAAACTTTT
* * * * * * *
7637676 GAAAACTCAAATGCTTCCCCTCAATTGAGGCTTTGAAACTTTG
1 AAAAAATAAAATGCTTCCCCACAACTAAGGCTTTGAAACTTTT
* * *
7637719 AAAAAATAAAATGTTTCTCCATAACTAAGGCTTTGAAACTTTT
1 AAAAAATAAAATGCTTCCCCACAACTAAGGCTTTGAAACTTTT
* * * * *
7637762 GAAAAATAAAAT-ATTCATCCACAACTGAGGCTTTGAAACTTTG
1 AAAAAATAAAATGCTTC-CCCACAACTAAGGCTTTGAAACTTTT
*
7637805 AAAAATTAAA
1 AAAAAATAAA
7637815 TAAGATTATT
Statistics
Matches: 278, Mismatches: 66, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
41 19 0.07
42 84 0.30
43 136 0.49
44 8 0.03
45 11 0.04
46 13 0.05
47 7 0.03
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.29
Consensus pattern (43 bp):
AAAAAATAAAATGCTTCCCCACAACTAAGGCTTTGAAACTTTT
Found at i:7637631 original size:84 final size:84
Alignment explanation
Indices: 7637515--7637808 Score: 333
Period size: 84 Copynumber: 3.5 Consensus size: 84
7637505 GAACTTTTGA
* * * *
7637515 AAAATGCTCCCCACAGCAAAGGCTTTGGAACTTTTGAAAATAAAATGCTTTC-CTACAACTGAGG
1 AAAATGCTCCCCACAACTAAGGCTTTGAAAC-TTTGAAAATAAAATGCTTTCTCTACAACTAAGG
7637579 CTTTGAAACTTTTGAAAAAT
65 CTTTGAAACTTTTGAAAAAT
* * * *
7637599 AAAATGCTCCCCACAACTAAGGTTTTGAAACTTTTAAAAATATAATGC-TTCTGTACAACTAAGG
1 AAAATGCTCCCCACAACTAAGGCTTTGAAAC-TTTGAAAATAAAATGCTTTCTCTACAACTAAGG
* *
7637663 CTTTGAAACTTTGGAAAACT
65 CTTTGAAACTTTTGAAAAAT
* * * * * *
7637683 CAAATGCTTCCCCTCAATTGAGGCTTTGAAACTTTGAAAAAATAAAATG-TTTCTCCATAACTAA
1 AAAATGC-TCCCCACAACTAAGGCTTTGAAACTTTG--AAAATAAAATGCTTTCTCTACAACTAA
7637747 GGCTTTGAAACTTTTGAAAAAT
63 GGCTTTGAAACTTTTGAAAAAT
** * *
7637769 AAAATATTCATCCACAACTGAGGCTTTGAAACTTTGAAAA
1 AAAATGCTC-CCCACAACTAAGGCTTTGAAACTTTGAAAA
7637809 ATTAAATAAG
Statistics
Matches: 176, Mismatches: 28, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
83 3 0.02
84 83 0.47
85 22 0.12
86 68 0.39
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (84 bp):
AAAATGCTCCCCACAACTAAGGCTTTGAAACTTTGAAAATAAAATGCTTTCTCTACAACTAAGGC
TTTGAAACTTTTGAAAAAT
Found at i:7639627 original size:10 final size:10
Alignment explanation
Indices: 7639609--7639638 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
7639599 TCTTCATCAA
*
7639609 TTCTCTTTTT
1 TTCTTTTTTT
7639619 TTCTTTTTTT
1 TTCTTTTTTT
7639629 TTCTTTTTTT
1 TTCTTTTTTT
7639639 CATATTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (10 bp):
TTCTTTTTTT
Found at i:7639635 original size:18 final size:20
Alignment explanation
Indices: 7639612--7639649 Score: 62
Period size: 18 Copynumber: 2.0 Consensus size: 20
7639602 TCATCAATTC
7639612 TCTTTTTTTC-T-TTTTTTT
1 TCTTTTTTTCATATTTTTTT
7639630 TCTTTTTTTCATATTTTTTT
1 TCTTTTTTTCATATTTTTTT
7639650 GATTGGCACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.56
19 1 0.06
20 7 0.39
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (20 bp):
TCTTTTTTTCATATTTTTTT
Found at i:7645196 original size:21 final size:20
Alignment explanation
Indices: 7645163--7645205 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
7645153 AAATATCATG
*
7645163 CAAATATATTATAAATTATAT
1 CAAATATATTAT-AATAATAT
7645184 CAAATATCA-TATAATAATAT
1 CAAATAT-ATTATAATAATAT
7645204 CA
1 CA
7645206 TGCCTAGATC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 9 0.45
21 10 0.50
22 1 0.05
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.37
Consensus pattern (20 bp):
CAAATATATTATAATAATAT
Found at i:7645298 original size:18 final size:18
Alignment explanation
Indices: 7645241--7645350 Score: 86
Period size: 18 Copynumber: 6.0 Consensus size: 18
7645231 TGCATGAATG
7645241 TCATGCAAATATATTAATGA
1 TCATGCAAATATA-TAAT-A
*
7645261 TCATGC-AATA-ATAACAA
1 TCATGCAAATATATAA-TA
*
7645278 TCATGTAAATATATAATA
1 TCATGCAAATATATAATA
7645296 TCATGCAAATATAT--TA
1 TCATGCAAATATATAATA
* *
7645312 TCATTC-AATAATATAAAA
1 TCATGCAAAT-ATATAATA
7645330 TGCCATGCAAATATAGTAATA
1 T--CATGCAAATATA-TAATA
7645351 ACCATTCATG
Statistics
Matches: 72, Mismatches: 8, Indels: 19
0.73 0.08 0.19
Matches are distributed among these distances:
15 3 0.04
16 11 0.15
17 9 0.12
18 21 0.29
19 8 0.11
20 13 0.18
21 7 0.10
ACGTcount: A:0.48, C:0.12, G:0.07, T:0.33
Consensus pattern (18 bp):
TCATGCAAATATATAATA
Found at i:7645350 original size:55 final size:54
Alignment explanation
Indices: 7645241--7645350 Score: 127
Period size: 55 Copynumber: 2.0 Consensus size: 54
7645231 TGCATGAATG
* *
7645241 TCATGCAAATATATTAATGATCATGCAATAATAACAATCATGTAAATATATAATA
1 TCATGCAAATATATT-ATGATCATGCAATAATAAAAATCATGCAAATATATAATA
*
7645296 TCATGCAAATATA-T-T-ATCATTCAATAATATAAAATGCCATGCAAATATAGTAATA
1 TCATGCAAATATATTATGATCATGCAATAATA-AAAAT--CATGCAAATATA-TAATA
7645351 ACCATTCATG
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
51 13 0.27
52 5 0.10
54 12 0.25
55 18 0.38
ACGTcount: A:0.48, C:0.12, G:0.07, T:0.33
Consensus pattern (54 bp):
TCATGCAAATATATTATGATCATGCAATAATAAAAATCATGCAAATATATAATA
Found at i:7645553 original size:4 final size:4
Alignment explanation
Indices: 7645544--7645571 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
7645534 ATTATGCAAT
7645544 AATA AATA AATA AATA AATA AATA AATA
1 AATA AATA AATA AATA AATA AATA AATA
7645572 TGTTAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
AATA
Found at i:7645603 original size:44 final size:44
Alignment explanation
Indices: 7645551--7645656 Score: 203
Period size: 44 Copynumber: 2.4 Consensus size: 44
7645541 AATAATAAAT
*
7645551 AAATAAATAAATAAATAAATATGTTAATAATCATACAATCACTC
1 AAATAAATAAATTAATAAATATGTTAATAATCATACAATCACTC
7645595 AAATAAATAAATTAATAAATATGTTAATAATCATACAATCACTC
1 AAATAAATAAATTAATAAATATGTTAATAATCATACAATCACTC
7645639 AAATAAATAAATTAATAA
1 AAATAAATAAATTAATAA
7645657 TCATGCAATT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 61 1.00
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.30
Consensus pattern (44 bp):
AAATAAATAAATTAATAAATATGTTAATAATCATACAATCACTC
Found at i:7645658 original size:24 final size:23
Alignment explanation
Indices: 7645638--7645714 Score: 65
Period size: 20 Copynumber: 3.4 Consensus size: 23
7645628 TACAATCACT
7645638 CAAATAAATAAATTAATAATCATG
1 CAAATAAATAAA-TAATAATCATG
* *
7645662 CAATTAAAT--AT-ATAATAATG
1 CAAATAAATAAATAATAATCATG
*
7645682 CAAAT-AA-AAATATATAAACCATG
1 CAAATAAATAAATA-AT-AATCATG
7645705 CAAATAAATA
1 CAAATAAATA
7645715 TGCAATTAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 13
0.69 0.08 0.22
Matches are distributed among these distances:
19 2 0.05
20 14 0.34
21 1 0.02
22 3 0.07
23 10 0.24
24 10 0.24
25 1 0.02
ACGTcount: A:0.60, C:0.09, G:0.04, T:0.27
Consensus pattern (23 bp):
CAAATAAATAAATAATAATCATG
Found at i:7645676 original size:20 final size:20
Alignment explanation
Indices: 7645653--7645860 Score: 78
Period size: 20 Copynumber: 11.1 Consensus size: 20
7645643 AAATAAATTA
7645653 ATAATCATGCAATTAAATAT
1 ATAATCATGCAATTAAATAT
* * *
7645673 ATAATAATGCAAATAAAAAT
1 ATAATCATGCAATTAAATAT
** * **
7645693 AT-AT-AAACCATGCAA-AT
1 ATAATCATGCAATTAAATAT
7645710 A-AAT-ATGCAATTAAATAT
1 ATAATCATGCAATTAAATAT
*
7645728 ATAATCATGCAAATTGTAATAT
1 ATAATCATGC-AATT-AAATAT
* *
7645750 ATAA--A--CCATTCAA-AT
1 ATAATCATGCAATTAAATAT
* *
7645765 A-AA-CAAGCAATTAGATAT
1 ATAATCATGCAATTAAATAT
7645783 ATAATCATGC-----AA-AT
1 ATAATCATGCAATTAAATAT
*
7645797 A-AA-CTTGCAATTAAATAT
1 ATAATCATGCAATTAAATAT
*
7645815 ATAATCATGCAAATAAATATATT
1 ATAATCATGC-AATTAA-ATA-T
*
7645838 AATAATCAAGCAATTAAATAT
1 -ATAATCATGCAATTAAATAT
7645859 AT
1 AT
7645861 TAATAATCAT
Statistics
Matches: 137, Mismatches: 27, Indels: 48
0.65 0.13 0.23
Matches are distributed among these distances:
12 4 0.03
13 2 0.01
14 5 0.04
15 5 0.04
16 2 0.01
17 21 0.15
18 15 0.11
19 9 0.07
20 34 0.25
21 10 0.07
22 15 0.11
23 6 0.04
24 9 0.07
ACGTcount: A:0.53, C:0.11, G:0.06, T:0.30
Consensus pattern (20 bp):
ATAATCATGCAATTAAATAT
Found at i:7645709 original size:23 final size:22
Alignment explanation
Indices: 7645667--7645712 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 22
7645657 TCATGCAATT
7645667 AAATATATAATAATGCAAATAA
1 AAATATATAATAATGCAAATAA
7645689 AAATATATAA-ACCATGCAAATAA
1 AAATATATAATA--ATGCAAATAA
7645712 A
1 A
7645713 TATGCAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 1 0.05
22 10 0.45
23 11 0.50
ACGTcount: A:0.63, C:0.09, G:0.04, T:0.24
Consensus pattern (22 bp):
AAATATATAATAATGCAAATAA
Found at i:7645711 original size:55 final size:55
Alignment explanation
Indices: 7645652--7645799 Score: 208
Period size: 55 Copynumber: 2.7 Consensus size: 55
7645642 TAAATAAATT
*
7645652 AATAATCATGCAATTAAATATATAATAATGCAAATAAAAATATATAAACCATGCA
1 AATAATCATGCAATTAAATATATAATCATGCAAATAAAAATATATAAACCATGCA
*** *
7645707 AATAAAT-ATGCAATTAAATATATAATCATGCAAATTGTAATATATAAACCATTCA
1 AAT-AATCATGCAATTAAATATATAATCATGCAAATAAAAATATATAAACCATGCA
* * *
7645762 AATAAACAAGCAATTAGATATATAATCATGCAAATAAA
1 AATAATCATGCAATTAAATATATAATCATGCAAATAAA
7645800 CTTGCAATTA
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
54 2 0.03
55 75 0.94
56 3 0.04
ACGTcount: A:0.55, C:0.11, G:0.06, T:0.28
Consensus pattern (55 bp):
AATAATCATGCAATTAAATATATAATCATGCAAATAAAAATATATAAACCATGCA
Found at i:7645796 original size:32 final size:32
Alignment explanation
Indices: 7645745--7645831 Score: 120
Period size: 32 Copynumber: 2.7 Consensus size: 32
7645735 TGCAAATTGT
* *
7645745 AATATATAAACCATTCAAATAAACAAGCAATTA
1 AATATAT-AATCATGCAAATAAACAAGCAATTA
* **
7645778 GATATATAATCATGCAAATAAACTTGCAATTA
1 AATATATAATCATGCAAATAAACAAGCAATTA
7645810 AATATATAATCATGCAAATAAA
1 AATATATAATCATGCAAATAAA
7645832 TATATTAATA
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
32 42 0.88
33 6 0.12
ACGTcount: A:0.54, C:0.13, G:0.06, T:0.28
Consensus pattern (32 bp):
AATATATAATCATGCAAATAAACAAGCAATTA
Found at i:7645842 original size:24 final size:24
Alignment explanation
Indices: 7645815--7645975 Score: 128
Period size: 24 Copynumber: 7.0 Consensus size: 24
7645805 AATTAAATAT
7645815 ATAATCATGCAAATAAATATATTA
1 ATAATCATGCAAATAAATATATTA
* *
7645839 ATAATCAAGCAATTAAATATATTA
1 ATAATCATGCAAATAAATATATTA
7645863 ATAATCATGC-AATCAAAT-TA--A
1 ATAATCATGCAAAT-AAATATATTA
* **
7645884 ATATGATCCTAAAAATAAATATATTA
1 ATA--ATCATGCAAATAAATATATTA
*
7645910 ATAATCAAGC----AAATATATTA
1 ATAATCATGCAAATAAATATATTA
**
7645930 ATAAATCACACAAATAAATATA-T-
1 AT-AATCATGCAAATAAATATATTA
*
7645953 -TAATCATGCAAACAAATATATTA
1 ATAATCATGCAAATAAATATATTA
7645976 GGCAAATAAA
Statistics
Matches: 107, Mismatches: 16, Indels: 29
0.70 0.11 0.19
Matches are distributed among these distances:
20 12 0.11
21 26 0.24
22 2 0.02
23 12 0.11
24 44 0.41
25 7 0.07
26 4 0.04
ACGTcount: A:0.55, C:0.11, G:0.04, T:0.31
Consensus pattern (24 bp):
ATAATCATGCAAATAAATATATTA
Found at i:7645930 original size:47 final size:46
Alignment explanation
Indices: 7645852--7645975 Score: 137
Period size: 47 Copynumber: 2.7 Consensus size: 46
7645842 ATCAAGCAAT
* * *
7645852 TAAATATATTAATAATCATGC-AATCAAATTAAATATGATC-CTAAAAA
1 TAAATATATTAATAATCAAGCAAAT-ATATTAAATA-AATCAC-AAAAA
*
7645899 TAAATATATTAATAATCAAGCAAATATATT-AATAAATCACACAAA
1 TAAATATATTAATAATCAAGCAAATATATTAAATAAATCACAAAAA
* *
7645944 TAAATATATTAATCATGCAAACAAATATATTA
1 TAAATATATTAATAAT-CAAGCAAATATATTA
7645976 GGCAAATAAA
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
45 22 0.33
46 18 0.27
47 24 0.36
48 3 0.04
ACGTcount: A:0.55, C:0.10, G:0.03, T:0.31
Consensus pattern (46 bp):
TAAATATATTAATAATCAAGCAAATATATTAAATAAATCACAAAAA
Found at i:7645943 original size:21 final size:20
Alignment explanation
Indices: 7645900--7645964 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 20
7645890 TCCTAAAAAT
7645900 AAATATATTAATAATCAAGC
1 AAATATATTAATAATCAAGC
7645920 AAATATATTAATAAATCACA-C
1 AAATATATTAAT-AATCA-AGC
* * *
7645941 AAATAAATATATTAATCATGC
1 AAATATAT-TAATAATCAAGC
7645962 AAA
1 AAA
7645965 CAAATATATT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
20 12 0.32
21 22 0.58
22 4 0.11
ACGTcount: A:0.57, C:0.11, G:0.03, T:0.29
Consensus pattern (20 bp):
AAATATATTAATAATCAAGC
Found at i:7654741 original size:81 final size:81
Alignment explanation
Indices: 7654606--7654763 Score: 298
Period size: 81 Copynumber: 2.0 Consensus size: 81
7654596 TTGATTCATA
7654606 TATAATCTAAAAAAGCCTTGAGTATATATAATTTTTTAAAATTATTATTATTATTATTACTACTA
1 TATAATCTAAAAAAGCCTTGAGTATATATAATTTTTTAAAATTATTATTATTATTATTACTACTA
7654671 CTACTACTACTATTAC
66 CTACTACTACTATTAC
* *
7654687 TATAATCTAAAAGAGCCTTGATTATATATAATTTTTTAAAATTATTATTATTATTATTACTACTA
1 TATAATCTAAAAAAGCCTTGAGTATATATAATTTTTTAAAATTATTATTATTATTATTACTACTA
7654752 CTACTACTACTA
66 CTACTACTACTA
7654764 ACTACTATTA
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
81 75 1.00
ACGTcount: A:0.39, C:0.12, G:0.04, T:0.45
Consensus pattern (81 bp):
TATAATCTAAAAAAGCCTTGAGTATATATAATTTTTTAAAATTATTATTATTATTATTACTACTA
CTACTACTACTATTAC
Found at i:7654750 original size:3 final size:3
Alignment explanation
Indices: 7654744--7654784 Score: 64
Period size: 3 Copynumber: 13.3 Consensus size: 3
7654734 TTATTATTAT
*
7654744 TAC TAC TAC TAC TAC TAC TAAC TAC TAT TAC TAC TAC TAC T
1 TAC TAC TAC TAC TAC TAC T-AC TAC TAC TAC TAC TAC TAC T
7654785 TGACATCCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.34, C:0.29, G:0.00, T:0.37
Consensus pattern (3 bp):
TAC
Found at i:7654769 original size:19 final size:19
Alignment explanation
Indices: 7654745--7654782 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
7654735 TATTATTATT
7654745 ACTACTACTACTACTACTA
1 ACTACTACTACTACTACTA
*
7654764 ACTACTATTACTACTACTA
1 ACTACTACTACTACTACTA
7654783 CTTGACATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.37, C:0.29, G:0.00, T:0.34
Consensus pattern (19 bp):
ACTACTACTACTACTACTA
Found at i:7655132 original size:23 final size:21
Alignment explanation
Indices: 7655078--7655141 Score: 58
Period size: 23 Copynumber: 2.8 Consensus size: 21
7655068 ATGAAACAAG
7655078 AAAAAATTTAAATAAAATTTTTT
1 AAAAAATTT--ATAAAATTTTTT
7655101 AAATGAAATTTATAAAATTTTTT
1 AAA--AAATTTATAAAATTTTTT
7655124 ATTAAAAATATTA-AAAAT
1 A--AAAAAT-TTATAAAAT
7655142 AAAATTGAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
23 25 0.69
24 3 0.08
25 8 0.22
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (21 bp):
AAAAAATTTATAAAATTTTTT
Found at i:7656687 original size:19 final size:19
Alignment explanation
Indices: 7656652--7656701 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 19
7656642 ACATATTTTT
*
7656652 AAAAATATATT-AAAAATA
1 AAAAATAAATTAAAAAATA
* *
7656670 AAATATTAATTAAAAAATA
1 AAAAATAAATTAAAAAATA
7656689 AAAAATAAATTAA
1 AAAAATAAATTAA
7656702 TTTTTTTAAC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
18 8 0.31
19 18 0.69
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (19 bp):
AAAAATAAATTAAAAAATA
Found at i:7662828 original size:75 final size:74
Alignment explanation
Indices: 7662690--7662832 Score: 209
Period size: 74 Copynumber: 1.9 Consensus size: 74
7662680 TTGAGAATAC
* * *
7662690 TGCTGCACTACCTCATGCCCATGCTGATATTCACAATTGTTTATGACCCAATCTTTTTTTTTTTT
1 TGCTGCAATACCTCATGCCCATGCGGATATTCACAATTGTTTATGACCCAACCTTTTTTTTTTTT
7662755 TTTTTTTAA
66 TTTTTTTAA
* *
7662764 TGCTGCAAATACCTCATGCCCATG-GGATATTCACAATTGTTTATG-CCTCGACCGTTTTTTTTT
1 TGCTGC-AATACCTCATGCCCATGCGGATATTCACAATTGTTTATGACC-CAACCTTTTTTTTTT
7662827 TTTTTT
64 TTTTTT
7662833 AGTGACAAGG
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
73 2 0.03
74 44 0.71
75 16 0.26
ACGTcount: A:0.20, C:0.22, G:0.12, T:0.47
Consensus pattern (74 bp):
TGCTGCAATACCTCATGCCCATGCGGATATTCACAATTGTTTATGACCCAACCTTTTTTTTTTTT
TTTTTTTAA
Found at i:7663158 original size:10 final size:10
Alignment explanation
Indices: 7663143--7663171 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
7663133 TCAAACCCCA
7663143 AAAAAAAATT
1 AAAAAAAATT
7663153 -AAAAAAATT
1 AAAAAAAATT
7663162 AAAAAAAATT
1 AAAAAAAATT
7663172 GTGCTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (10 bp):
AAAAAAAATT
Found at i:7669219 original size:20 final size:19
Alignment explanation
Indices: 7669175--7669219 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
7669165 CCGCGCGTCA
*
7669175 ACCCGCGACCCGACCCGGG
1 ACCCGCGACCCGACCCGCG
**
7669194 GTCCGCGCACCCGACCCGCG
1 ACCCGCG-ACCCGACCCGCG
7669214 ACCCGC
1 ACCCGC
7669220 TGCCTTTATC
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.13, C:0.56, G:0.29, T:0.02
Consensus pattern (19 bp):
ACCCGCGACCCGACCCGCG
Found at i:7669295 original size:32 final size:32
Alignment explanation
Indices: 7669250--7669341 Score: 148
Period size: 32 Copynumber: 2.9 Consensus size: 32
7669240 GGTCTGACTG
*
7669250 GACCGAACCGAACCGCCGGACCAAACCAACCA
1 GACCGAACCGAACCGCCGGACCGAACCAACCA
* *
7669282 GATCGAACTGAACCGCCGGACCGAACCAACCA
1 GACCGAACCGAACCGCCGGACCGAACCAACCA
*
7669314 GACCGAACCGAACCGCCGAACCGAACCA
1 GACCGAACCGAACCGCCGGACCGAACCA
7669342 GGAGTTGACC
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 54 1.00
ACGTcount: A:0.36, C:0.41, G:0.21, T:0.02
Consensus pattern (32 bp):
GACCGAACCGAACCGCCGGACCGAACCAACCA
Found at i:7669334 original size:13 final size:15
Alignment explanation
Indices: 7669300--7669342 Score: 65
Period size: 13 Copynumber: 3.1 Consensus size: 15
7669290 TGAACCGCCG
7669300 GACCGAACC-AACCA
1 GACCGAACCGAACCA
7669314 GACCGAACCGAACC-
1 GACCGAACCGAACCA
7669328 G-CCGAACCGAACCA
1 GACCGAACCGAACCA
7669342 G
1 G
7669343 GAGTTGACCG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 12 0.44
14 11 0.41
15 4 0.15
ACGTcount: A:0.37, C:0.42, G:0.21, T:0.00
Consensus pattern (15 bp):
GACCGAACCGAACCA
Found at i:7669407 original size:16 final size:18
Alignment explanation
Indices: 7669386--7669418 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
7669376 GTAAAAAAAA
7669386 AATTTTT-TT-TTTTTTG
1 AATTTTTCTTATTTTTTG
7669402 AATTTTTCTTATTTTTT
1 AATTTTTCTTATTTTTT
7669419 AAGTATTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 2 0.13
18 6 0.40
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (18 bp):
AATTTTTCTTATTTTTTG
Found at i:7669798 original size:19 final size:18
Alignment explanation
Indices: 7669758--7669801 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
7669748 TTTAAAAAAA
* *
7669758 TAATAAATAAAAATTGAT
1 TAATAAATAAAAATTAAC
*
7669776 TAATAAATTAAAATATAAC
1 TAATAAATAAAAAT-TAAC
7669795 TAATAAA
1 TAATAAA
7669802 AAATAAGAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 13 0.59
19 9 0.41
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (18 bp):
TAATAAATAAAAATTAAC
Found at i:7669824 original size:213 final size:211
Alignment explanation
Indices: 7669594--7670151 Score: 806
Period size: 213 Copynumber: 2.6 Consensus size: 211
7669584 AAAAAAATGA
*
7669594 AAGAA-AAAGGAAATTTTTATCCGACGATGAGATTCAAAGGTATTCCGAGTAGTGATGCCTACGA
1 AAGAAGAAAGGAAATTTTTATCCGATGATGAGATTCAAAGGTATTCCGAGTAGTGATGCCTACGA
7669658 AATCTCTAGGTGAGAAGATTTTTTTTAAAATACTACCAGCGTATTGGAGTATTTATAAAAAAATT
66 AATCTCTAGGTGAGAAGATTTTTTTTAAAATACTACCAGCGTATTGGAGTATTTAT-AAAAAATT
* * *
7669723 TTCAATACAGTAAAGATTTTCTTTTTTTAAAAAAATAATAAATAAAAATTGATTAATA-AAT-TA
130 TTCAATACAGTAAAGATTTTCTTTTTTT--AAAAATAATAAATAAAAATTAATGAATATAATAAA
7669786 AAATATAACTAATAAAAAAT
193 AAATATAACTAAT-AAAAAT
7669806 AAG-AGAAGAGGAAATTTTTATCCGATGATGAGATTCAAAGGTATTCCGAGTAGTGATGCCTACG
1 AAGAAGAA-AGGAAATTTTTATCCGATGATGAGATTCAAAGGTATTCCGAGTAGTGATGCCTACG
* *
7669870 AAATCTCTAGGTGAGAAGA-TTTTTTT-AAGTACTACCAGCGTATTGGAGTATTTATAAAAATTT
65 AAATCTCTAGGTGAGAAGATTTTTTTTAAAATACTACCAGCGTATTGGAGTATTTATAAAAAATT
* *
7669933 TTCAATACAGTAAAGGTTTTCTTTTTTTAAGAATAATAAATAAAAATTAATGAATATAATAAAAA
130 TTCAATACAGTAAAGATTTTCTTTTTTTAAAAATAATAAATAAAAATTAATGAATATAATAAAAA
*
7669998 ATATAAGTAATAAAAAT
195 ATATAACTAATAAAAAT
* * * * * * *
7670015 AAGAAGAAAAGAAA-TTTAATCCAATGATGAGATTCTAAAAGTATTCCGAGTAGAGATGCTTTAA
1 AAGAAGAAAGGAAATTTTTATCCGATGATGAGATTC-AAAGGTATTCCGAGTAGTGATGC-CTAC
* * * * *
7670079 GAAATCTCTAAGTGAGAAGATTTTTTGTAAAATATTACCAGCGTATTGGAATATTTATAGAAAAT
64 GAAATCTCTAGGTGAGAAGATTTTTTTTAAAATACTACCAGCGTATTGGAGTATTTATAAAAAAT
*
7670144 CTTCAATA
129 TTTCAATA
7670152 TGATTAAATT
Statistics
Matches: 313, Mismatches: 24, Indels: 18
0.88 0.07 0.05
Matches are distributed among these distances:
208 44 0.14
209 38 0.12
210 72 0.23
211 35 0.11
212 50 0.16
213 74 0.24
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.33
Consensus pattern (211 bp):
AAGAAGAAAGGAAATTTTTATCCGATGATGAGATTCAAAGGTATTCCGAGTAGTGATGCCTACGA
AATCTCTAGGTGAGAAGATTTTTTTTAAAATACTACCAGCGTATTGGAGTATTTATAAAAAATTT
TCAATACAGTAAAGATTTTCTTTTTTTAAAAATAATAAATAAAAATTAATGAATATAATAAAAAA
TATAACTAATAAAAAT
Found at i:7669991 original size:20 final size:19
Alignment explanation
Indices: 7669959--7670016 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 19
7669949 TTTTCTTTTT
7669959 TTAAGAATAATAAATAAAAA
1 TTAAGAATAAT-AATAAAAA
7669979 TTAATGAAT-ATAATAAAAAA
1 TTAA-GAATAATAAT-AAAAA
*
7669999 TATAAGTAATAAAAATAA
1 T-TAAG-AATAATAATAA
7670017 GAAGAAAAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
19 3 0.09
20 13 0.41
21 12 0.38
22 4 0.12
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (19 bp):
TTAAGAATAATAATAAAAA
Found at i:7670009 original size:21 final size:17
Alignment explanation
Indices: 7669964--7670014 Score: 52
Period size: 19 Copynumber: 2.9 Consensus size: 17
7669954 TTTTTTTAAG
7669964 AATAATAAATAAAAATT
1 AATAATAAATAAAAATT
*
7669981 AATGAATATAATAAAAAAT
1 AAT-AATA-AATAAAAATT
7670000 -ATAAGT-AATAAAAAT
1 AATAA-TAAATAAAAAT
7670015 AAGAAGAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
16 8 0.28
17 5 0.17
18 7 0.24
19 9 0.31
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (17 bp):
AATAATAAATAAAAATT
Found at i:7670199 original size:21 final size:23
Alignment explanation
Indices: 7670174--7670223 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
7670164 TTTTTTCTTC
*
7670174 AAAATTTTAAT-TAA-AATTAAT
1 AAAATTTTAATAAAATAATTAAT
7670195 AAAA--TTAATAAAATAATTAAT
1 AAAATTTTAATAAAATAATTAAT
7670216 AAAATTTT
1 AAAATTTT
7670224 TGAATGAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
19 5 0.21
20 2 0.08
21 15 0.62
23 2 0.08
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (23 bp):
AAAATTTTAATAAAATAATTAAT
Found at i:7671419 original size:20 final size:20
Alignment explanation
Indices: 7671369--7671419 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
7671359 GTGTAATACG
**
7671369 AAACAAAAAAAAAATCTCAA
1 AAACAAAAAAAAAATCAAAA
**
7671389 AAACATTAAAAAAA-CAAAAA
1 AAACAAAAAAAAAATC-AAAA
7671409 AAACAAAAAAA
1 AAACAAAAAAA
7671420 TGTTTTTTTT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
19 1 0.04
20 23 0.96
ACGTcount: A:0.80, C:0.12, G:0.00, T:0.08
Consensus pattern (20 bp):
AAACAAAAAAAAAATCAAAA
Found at i:7674231 original size:2 final size:2
Alignment explanation
Indices: 7674224--7674255 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7674214 TGAGGAACTT
7674224 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7674256 AGAGGTTGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7674422 original size:29 final size:29
Alignment explanation
Indices: 7674385--7674442 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
7674375 ATTCATGACA
* * * *
7674385 AATTTTGTTTTTATACTTTGATTTTTTTG
1 AATTGTGTTATTATACTTTCAATTTTTTG
7674414 AATTGTGTTATTATACTTTCAATTTTTTG
1 AATTGTGTTATTATACTTTCAATTTTTTG
7674443 TTGATTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.21, C:0.05, G:0.10, T:0.64
Consensus pattern (29 bp):
AATTGTGTTATTATACTTTCAATTTTTTG
Found at i:7679026 original size:19 final size:19
Alignment explanation
Indices: 7679002--7679040 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
7678992 GGTGTTTATC
7679002 TACTGTGGCGTAAGCTTTG
1 TACTGTGGCGTAAGCTTTG
7679021 TACTGTGGCGTAAGCTTTG
1 TACTGTGGCGTAAGCTTTG
7679040 T
1 T
7679041 CTAGTCCAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.31, T:0.38
Consensus pattern (19 bp):
TACTGTGGCGTAAGCTTTG
Found at i:7679616 original size:26 final size:25
Alignment explanation
Indices: 7679558--7679616 Score: 59
Period size: 26 Copynumber: 2.4 Consensus size: 25
7679548 AATGAGTTCG
*
7679558 TTCG-TAA-ATATTAAATGAATATA
1 TTCGTTAATATATTAAACGAATATA
** *
7679581 TTTATGAATATATATAAACGAATATA
1 TTCGTTAATATAT-TAAACGAATATA
7679607 TTCGTTAATA
1 TTCGTTAATA
7679617 ATAAATTAAT
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
23 2 0.08
24 2 0.08
25 4 0.15
26 18 0.69
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.41
Consensus pattern (25 bp):
TTCGTTAATATATTAAACGAATATA
Found at i:7679662 original size:15 final size:16
Alignment explanation
Indices: 7679630--7679672 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
7679620 AATTAATCAT
7679630 AATCAAATAAAT-TTA
1 AATCAAATAAATCTTA
7679645 AAT-AAATAAATCTTA
1 AATCAAATAAATCTTA
*
7679660 AATGAATATAAAT
1 AATCAA-ATAAAT
7679673 GAATTTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 8 0.32
15 9 0.36
16 2 0.08
17 6 0.24
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (16 bp):
AATCAAATAAATCTTA
Found at i:7681335 original size:1 final size:1
Alignment explanation
Indices: 7681331--7681356 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
7681321 TCTTTGAAGC
7681331 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
7681357 CAAGAGATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:7682598 original size:26 final size:26
Alignment explanation
Indices: 7682539--7682599 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
7682529 ATTAAAAATA
*
7682539 ATATATAAATCACAATACATTTATTTT
1 ATAT-TAAATCACAATACATTTATTTG
7682566 ATATTAAAT-ACAATACATGTTATCTTG
1 ATATTAAATCACAATACAT-TTAT-TTG
7682593 AT-TTAAA
1 ATATTAAA
7682600 ATTAATAAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
25 9 0.29
26 14 0.45
27 8 0.26
ACGTcount: A:0.44, C:0.10, G:0.03, T:0.43
Consensus pattern (26 bp):
ATATTAAATCACAATACATTTATTTG
Found at i:7687499 original size:6 final size:6
Alignment explanation
Indices: 7687488--7687515 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
7687478 AAAAAATAAA
7687488 TTTAAT TTTAAT TTTAAT TTTAAT TTTA
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTA
7687516 TTTGATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TTTAAT
Found at i:7687742 original size:16 final size:18
Alignment explanation
Indices: 7687711--7687744 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
7687701 ATTTTTTACT
7687711 TTTTTAATTAATATTTTA
1 TTTTTAATTAATATTTTA
7687729 TTTTTAA-T-ATATTTTA
1 TTTTTAATTAATATTTTA
7687745 AAAAATATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 1 0.06
18 7 0.44
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTTAATTAATATTTTA
Found at i:7689510 original size:3 final size:3
Alignment explanation
Indices: 7689502--7689539 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
7689492 TTTATAAAGC
7689502 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
7689540 TTTAAAAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:7694688 original size:30 final size:31
Alignment explanation
Indices: 7694625--7694698 Score: 82
Period size: 32 Copynumber: 2.5 Consensus size: 31
7694615 ATGTTTAAAT
*
7694625 TTATTACATTAAATATAAGATACCAACGCATC
1 TTATAACATTAAATATAAGATA-CAACGCATC
* * *
7694657 TTATAACATTAAATATGAGAT-GAAGGCATC
1 TTATAACATTAAATATAAGATACAACGCATC
7694687 TT-TAA-ATTAAAT
1 TTATAACATTAAAT
7694699 TTCAATCTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
28 7 0.18
29 3 0.08
30 9 0.24
32 19 0.50
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.34
Consensus pattern (31 bp):
TTATAACATTAAATATAAGATACAACGCATC
Found at i:7694955 original size:40 final size:41
Alignment explanation
Indices: 7694886--7694965 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 41
7694876 GATCTTAGTC
*
7694886 TAAAAATAATAGAAGATATTGCATATGTTAAAATTTGAATT
1 TAAAAATAATAGAAAATATTGCATATGTTAAAATTTGAATT
*
7694927 TAAAAATAATA-AAAATATTG-TTACTGTTAAAATTTGAAT
1 TAAAAATAATAGAAAATATTGCATA-TGTTAAAATTTGAAT
7694966 CCAAAATTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
39 2 0.06
40 23 0.64
41 11 0.31
ACGTcount: A:0.50, C:0.03, G:0.10, T:0.38
Consensus pattern (41 bp):
TAAAAATAATAGAAAATATTGCATATGTTAAAATTTGAATT
Found at i:7697638 original size:22 final size:23
Alignment explanation
Indices: 7697610--7697660 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
7697600 TTTTTGCATG
7697610 AATAAAATAA-AAAAAATATAAA
1 AATAAAATAATAAAAAATATAAA
* *
7697632 AATAAAA-AATAAAAATTTTAAA
1 AATAAAATAATAAAAAATATAAA
7697654 AA-AAAAT
1 AATAAAAT
7697661 TTGAGGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 6 0.24
22 19 0.76
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (23 bp):
AATAAAATAATAAAAAATATAAA
Found at i:7697856 original size:56 final size:56
Alignment explanation
Indices: 7697777--7697924 Score: 242
Period size: 56 Copynumber: 2.6 Consensus size: 56
7697767 TAAGAAAAAC
7697777 GTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAATAAAAAAACTTCCAAAT
1 GTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAATAAAAAAACTTCCAAAT
* * *
7697833 GTTTTAAGAAAAAATTGAAAGTATGAATTTTTCTTAAAATAAAAAAACTTCCAAAT
1 GTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAATAAAAAAACTTCCAAAT
** *
7697889 ACTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTA
1 GTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTA
7697925 TACAAAAGCA
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 83 1.00
ACGTcount: A:0.46, C:0.09, G:0.11, T:0.34
Consensus pattern (56 bp):
GTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAATAAAAAAACTTCCAAAT
Found at i:7701975 original size:9 final size:9
Alignment explanation
Indices: 7701957--7701993 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
7701947 GATCGATGTG
7701957 AATG-AAAA
1 AATGAAAAA
*
7701965 AAGGAAAAA
1 AATGAAAAA
7701974 AATGAAAAA
1 AATGAAAAA
7701983 AATGAAAAA
1 AATGAAAAA
7701992 AA
1 AA
7701994 AAGAAGAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
8 3 0.12
9 23 0.88
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.08
Consensus pattern (9 bp):
AATGAAAAA
Found at i:7702020 original size:17 final size:17
Alignment explanation
Indices: 7701992--7702028 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
7701982 AAATGAAAAA
7701992 AAAAGAAGAGAAAAATGG
1 AAAAGAAGAG-AAAATGG
7702010 AAAAG-AGAGAAAATGG
1 AAAAGAAGAGAAAATGG
7702026 AAA
1 AAA
7702029 CTCAAATTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 10 0.53
17 4 0.21
18 5 0.26
ACGTcount: A:0.68, C:0.00, G:0.27, T:0.05
Consensus pattern (17 bp):
AAAAGAAGAGAAAATGG
Found at i:7703122 original size:22 final size:22
Alignment explanation
Indices: 7703088--7703146 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
7703078 GAATACTTTG
*
7703088 ATGAAAATTTTTGAGTTCTC-AA
1 ATGAGAATTTTTGAGTT-TCAAA
*
7703110 ATGAGAATATTTGAGTTTCAAA
1 ATGAGAATTTTTGAGTTTCAAA
*
7703132 ATAAGAATTTTTGAG
1 ATGAGAATTTTTGAG
7703147 GTGTGAAGTC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 2 0.06
22 30 0.94
ACGTcount: A:0.39, C:0.05, G:0.17, T:0.39
Consensus pattern (22 bp):
ATGAGAATTTTTGAGTTTCAAA
Found at i:7704016 original size:41 final size:42
Alignment explanation
Indices: 7703809--7704009 Score: 250
Period size: 41 Copynumber: 4.9 Consensus size: 42
7703799 ATGATTGTCA
* *
7703809 AAGAGCAATTTATTTTTTTCAAAGTTGTGGTGCCTCTGCTTAG
1 AAGAGCAATTTA-TTTTTTCAAAGTTGTGGAGCCTCTGTTTAG
*
7703852 ACA-AGCAATTT-TTTTTTCAAAGTTGTGGAGCCTCTATTTAG
1 A-AGAGCAATTTATTTTTTCAAAGTTGTGGAGCCTCTGTTTAG
* *
7703893 AGGAGC-ATTTA-TTTTTCAAAGTTGTGGTGCCTCTGTTTAG
1 AAGAGCAATTTATTTTTTCAAAGTTGTGGAGCCTCTGTTTAG
* * * *
7703933 AGGAGCTATTTATTTTTTCAAAGTCGTTGAGCCTCTGTTTAG
1 AAGAGCAATTTATTTTTTCAAAGTTGTGGAGCCTCTGTTTAG
* *
7703975 AAGAGC-ATTTATTTTTCCAAAGTTGTTGAGCCTCT
1 AAGAGCAATTTATTTTTTCAAAGTTGTGGAGCCTCT
7704010 AATTAGAGGA
Statistics
Matches: 141, Mismatches: 12, Indels: 12
0.85 0.07 0.07
Matches are distributed among these distances:
40 37 0.26
41 63 0.45
42 31 0.22
43 9 0.06
44 1 0.01
ACGTcount: A:0.23, C:0.14, G:0.20, T:0.42
Consensus pattern (42 bp):
AAGAGCAATTTATTTTTTCAAAGTTGTGGAGCCTCTGTTTAG
Found at i:7704156 original size:44 final size:44
Alignment explanation
Indices: 7704056--7704169 Score: 122
Period size: 44 Copynumber: 2.6 Consensus size: 44
7704046 TGAATAGAGC
* * * * *
7704056 CTTGTTCATTTTTCAAAAGTTGTTGAGCCTCTAATTAGAGGAGT
1 CTTGTTTATTTTTTAAAAGTCGTTGAGACTCTAATTAAAGGAGT
* *
7704100 CTTGTTTATTTTTTAAAAGTCGTTGAGACTTTATTTAAAGGA-T
1 CTTGTTTATTTTTTAAAAGTCGTTGAGACTCTAATTAAAGGAGT
* * * *
7704143 CTTATTTTTTTTTTTAAAGTCATTGAG
1 CTTGTTTATTTTTTAAAAGTCGTTGAG
7704170 CTTCTGTTTA
Statistics
Matches: 59, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
43 24 0.41
44 35 0.59
ACGTcount: A:0.25, C:0.10, G:0.17, T:0.48
Consensus pattern (44 bp):
CTTGTTTATTTTTTAAAAGTCGTTGAGACTCTAATTAAAGGAGT
Found at i:7704229 original size:19 final size:19
Alignment explanation
Indices: 7704205--7704242 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7704195 AAATTTTAAC
*
7704205 CAAAAAAAATAAAAAAAAA
1 CAAAAAAAACAAAAAAAAA
*
7704224 CAAAAAAAGCAAAAAAAAA
1 CAAAAAAAACAAAAAAAAA
7704243 AAGTCGAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.87, C:0.08, G:0.03, T:0.03
Consensus pattern (19 bp):
CAAAAAAAACAAAAAAAAA
Found at i:7706700 original size:57 final size:58
Alignment explanation
Indices: 7706630--7706872 Score: 221
Period size: 57 Copynumber: 4.2 Consensus size: 58
7706620 TATAAAAATA
*
7706630 TAAAATAAAAATTTCAAAAAAAAC-TTTTGAGAAAAAGTTGAAAGTATCAATTTTTCT
1 TAAAATAAAAATTTCAAAAAAAACATTTTAAGAAAAAGTTGAAAGTATCAATTTTTCT
* * * * * * *
7706687 TCAAATTAAAATTTCAAAAAAAAAAAACATTTTTGAGGAAAAGTTGGAAGTACCAATTTTCCT
1 TAAAATAAAAATTTC----AAAAAAAACA-TTTTAAGAAAAAGTTGAAAGTATCAATTTTTCT
* * * *
7706750 T-AAA-AAAAATTGTCAAGAAAAACGTTTTAAGGAATAGTTGAAAGTATCAATTTTTCT
1 TAAAATAAAAATT-TCAAAAAAAACATTTTAAGAAAAAGTTGAAAGTATCAATTTTTCT
* * ** *
7706807 TAAAATAAAAAACTTC----CAAATGTTTTAAGAAAAAATTGAAAGTATCAATTTTTCT
1 TAAAAT-AAAAATTTCAAAAAAAACATTTTAAGAAAAAGTTGAAAGTATCAATTTTTCT
7706862 TAAAATAAAAA
1 TAAAATAAAAA
7706873 ATCTTTCAAA
Statistics
Matches: 156, Mismatches: 20, Indels: 23
0.78 0.10 0.12
Matches are distributed among these distances:
54 5 0.03
55 40 0.26
57 42 0.27
58 11 0.07
59 2 0.01
60 6 0.04
61 15 0.10
62 5 0.03
63 30 0.19
ACGTcount: A:0.50, C:0.08, G:0.10, T:0.32
Consensus pattern (58 bp):
TAAAATAAAAATTTCAAAAAAAACATTTTAAGAAAAAGTTGAAAGTATCAATTTTTCT
Found at i:7706712 original size:63 final size:62
Alignment explanation
Indices: 7706645--7706771 Score: 157
Period size: 63 Copynumber: 2.0 Consensus size: 62
7706635 TAAAAATTTC
* * *
7706645 AAAAAAAACTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTCAAATTAAAATT-TCAAAAAA
1 AAAAAAAACTTTTGAGAAAAAGTTGAAAGTACCAATTTTCCTT-AAA-AAAAATTGTCAAAAAA
* * * * *
7706708 AAAAAACATTTTTGAGGAAAAGTTGGAAGTACCAATTTTCCTTAAAAAAAATTGTCAAGAAA
1 AAAAAAAACTTTTGAGAAAAAGTTGAAAGTACCAATTTTCCTTAAAAAAAATTGTCAAAAAA
7706770 AA
1 AA
7706772 CGTTTTAAGG
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
61 6 0.11
62 12 0.22
63 37 0.67
ACGTcount: A:0.51, C:0.09, G:0.11, T:0.29
Consensus pattern (62 bp):
AAAAAAAACTTTTGAGAAAAAGTTGAAAGTACCAATTTTCCTTAAAAAAAATTGTCAAAAAA
Found at i:7706852 original size:55 final size:56
Alignment explanation
Indices: 7706773--7706919 Score: 233
Period size: 55 Copynumber: 2.6 Consensus size: 56
7706763 CAAGAAAAAC
*
7706773 GTTTTAAGGAATAGTTGAAAGTATCAATTTTTCTTAAAATAAAAAA-CTTCCAAAT
1 GTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAATAAAAAATCTTCCAAAT
* * *
7706828 GTTTTAAGAAAAAATTGAAAGTATCAATTTTTCTTAAAATAAAAAATCTTTCAAAT
1 GTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAATAAAAAATCTTCCAAAT
* *
7706884 GTTTTAAGGAAAAGTTGAAAGTGTCAATTTTCCTTA
1 GTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTA
7706920 TACAAAAGCA
Statistics
Matches: 83, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
55 43 0.52
56 40 0.48
ACGTcount: A:0.43, C:0.08, G:0.12, T:0.37
Consensus pattern (56 bp):
GTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAATAAAAAATCTTCCAAAT
Found at i:7707508 original size:15 final size:15
Alignment explanation
Indices: 7707488--7707562 Score: 59
Period size: 15 Copynumber: 5.1 Consensus size: 15
7707478 TCATAAAATT
*
7707488 TTTAATAAATTTTAA
1 TTTATTAAATTTTAA
*
7707503 TTTAATT-ATTTTTAA
1 TTT-ATTAAATTTTAA
7707518 -TTATTAACATTTT-A
1 TTTATTAA-ATTTTAA
* *
7707532 -TTATTAAATTCTCA
1 TTTATTAAATTTTAA
7707546 TTTATTAAAATTTTAA
1 TTTATT-AAATTTTAA
7707562 T
1 T
7707563 AAATTTTAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
13 7 0.15
14 12 0.25
15 19 0.40
16 10 0.21
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTATTAAATTTTAA
Found at i:7708611 original size:14 final size:15
Alignment explanation
Indices: 7708588--7708652 Score: 51
Period size: 15 Copynumber: 4.2 Consensus size: 15
7708578 ACCAAAAAAC
7708588 TTTTAGTAAATTTTT
1 TTTTAGTAAATTTTT
*
7708603 TTTTA-TAAATTTTAA
1 TTTTAGTAAATTTT-T
* * *
7708618 TTTAAATGAATTTTT
1 TTTTAGTAAATTTTT
*
7708633 TTATTATTATAATTTTT
1 TT-TTAGTA-AATTTTT
7708650 TTT
1 TTT
7708653 GTAATTAGAC
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
14 8 0.21
15 11 0.28
16 11 0.28
17 9 0.23
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (15 bp):
TTTTAGTAAATTTTT
Found at i:7710436 original size:30 final size:30
Alignment explanation
Indices: 7710367--7710439 Score: 94
Period size: 30 Copynumber: 2.4 Consensus size: 30
7710357 AATTTTATTG
7710367 TATCCAAATAAACCCTTAACATTTAATTTA
1 TATCCAAATAAACCCTTAACATTTAATTTA
* ** *
7710397 CATTTAAATAAACCTTTAA-ATTTTAATTTA
1 TATCCAAATAAACCCTTAACA-TTTAATTTA
7710427 TATCCAAATAAAC
1 TATCCAAATAAAC
7710440 TGCTAATATT
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
29 1 0.03
30 34 0.97
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.38
Consensus pattern (30 bp):
TATCCAAATAAACCCTTAACATTTAATTTA
Found at i:7711591 original size:23 final size:21
Alignment explanation
Indices: 7711556--7711617 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 21
7711546 GGATAATTAA
7711556 TATTTATTTTTAAAATTTATTTT
1 TATTT-TTTTT-AAATTTATTTT
*
7711579 TATTTTTTCTTAATTTTATTTT
1 TATTTTTT-TTAAATTTATTTT
* *
7711601 TATTTTTGTAAAATTTA
1 TATTTTTTTTAAATTTA
7711618 ATCATGCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
21 7 0.21
22 20 0.59
23 7 0.21
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (21 bp):
TATTTTTTTTAAATTTATTTT
Found at i:7712351 original size:42 final size:41
Alignment explanation
Indices: 7712289--7712561 Score: 323
Period size: 41 Copynumber: 6.5 Consensus size: 41
7712279 ACAAAGGCAC
7712289 CACCACAACTTTTGAAAAATAAATTGCTCTTTTAAATAGAGG
1 CACCACAAC-TTTGAAAAATAAATTGCTCTTTTAAATAGAGG
* * * * *
7712331 TATCACAACTTTAGAAAAATAAATTACTTTTTTTAAACAGAGG
1 CACCACAACTTT-GAAAAATAAATTGC-TCTTTTAAATAGAGG
* * * *
7712374 CACCACAACTTTAAAAAATAAATTGCTCCTCTAAACAGAGG
1 CACCACAACTTTGAAAAATAAATTGCTCTTTTAAATAGAGG
* *
7712415 TACCACAACTTTGAAAATTAAATTGCTCTTTTAAATAGAGG
1 CACCACAACTTTGAAAAATAAATTGCTCTTTTAAATAGAGG
* * * *
7712456 CACCACAACTTTTGAAAGATAAATTACTCCTCTAAATAGAGG
1 CACCACAAC-TTTGAAAAATAAATTGCTCTTTTAAATAGAGG
* *
7712498 CACCACAACTTTGAAAAATAAACTGCT-TCTATAAATAGAGG
1 CACCACAACTTTGAAAAATAAATTGCTCT-TTTAAATAGAGG
*
7712539 CACCATAACTTTGAAAAAATAAA
1 CACCACAACTTTG-AAAAATAAA
7712562 AGGCTCCGTA
Statistics
Matches: 196, Mismatches: 30, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
41 96 0.49
42 77 0.39
43 23 0.12
ACGTcount: A:0.43, C:0.18, G:0.11, T:0.28
Consensus pattern (41 bp):
CACCACAACTTTGAAAAATAAATTGCTCTTTTAAATAGAGG
Found at i:7712497 original size:83 final size:81
Alignment explanation
Indices: 7712289--7712561 Score: 348
Period size: 83 Copynumber: 3.3 Consensus size: 81
7712279 ACAAAGGCAC
* * *
7712289 CACCACAACTTTTGAAAAATAAATTGCTCTTTTAAATAGAGGTATCACAACTTTAGAAAAATAAA
1 CACCACAAC-TTTGAAAAATAAATTGCTCCTCTAAATAGAGGTACCACAACTTT-GAAAAATAAA
* *
7712354 TTACTTTTTTTAAACAGAGG
64 TTGC--TTTTTAAATAGAGG
* * *
7712374 CACCACAACTTTAAAAAATAAATTGCTCCTCTAAACAGAGGTACCACAACTTTGAAAATTAAATT
1 CACCACAACTTTGAAAAATAAATTGCTCCTCTAAATAGAGGTACCACAACTTTGAAAAATAAATT
7712439 GCTCTTTTAAATAGAGG
66 GCT-TTTTAAATAGAGG
* * * *
7712456 CACCACAACTTTTGAAAGATAAATTACTCCTCTAAATAGAGGCACCACAACTTTGAAAAATAAAC
1 CACCACAAC-TTTGAAAAATAAATTGCTCCTCTAAATAGAGGTACCACAACTTTGAAAAATAAAT
*
7712521 TGCTTCTATAAATAGAGG
65 TGCTT-TTTAAATAGAGG
*
7712539 CACCATAACTTTGAAAAAATAAA
1 CACCACAACTTTG-AAAAATAAA
7712562 AGGCTCCGTA
Statistics
Matches: 166, Mismatches: 18, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
81 1 0.01
82 26 0.16
83 91 0.55
84 39 0.23
85 9 0.05
ACGTcount: A:0.43, C:0.18, G:0.11, T:0.28
Consensus pattern (81 bp):
CACCACAACTTTGAAAAATAAATTGCTCCTCTAAATAGAGGTACCACAACTTTGAAAAATAAATT
GCTTTTTAAATAGAGG
Found at i:7712762 original size:23 final size:22
Alignment explanation
Indices: 7712736--7712785 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
7712726 GTTTTATAAG
*
7712736 GATTCAAATTTGCAAAATTTTAA
1 GATTCAAATTTGC-AAATTGTAA
**
7712759 GATTCGTATTTGCAAATTGTAA
1 GATTCAAATTTGCAAATTGTAA
7712781 GATTC
1 GATTC
7712786 GCATCCAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 13 0.54
23 11 0.46
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (22 bp):
GATTCAAATTTGCAAATTGTAA
Found at i:7712781 original size:22 final size:23
Alignment explanation
Indices: 7712743--7712786 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
7712733 AAGGATTCAA
*
7712743 ATTTGCAAAATTTTAAGATTCGT
1 ATTTGCAAAATTGTAAGATTCGT
7712766 ATTTGC-AAATTGTAAGATTCG
1 ATTTGCAAAATTGTAAGATTCG
7712787 CATCCAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.41
Consensus pattern (23 bp):
ATTTGCAAAATTGTAAGATTCGT
Found at i:7712927 original size:21 final size:20
Alignment explanation
Indices: 7712901--7712954 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
7712891 TTCACACCTT
*
7712901 AAAGATTCACATTTGAAACTC
1 AAAGATTTACATTTG-AACTC
* **
7712922 AAAGATTTTCATTTGAGTTC
1 AAAGATTTACATTTGAACTC
7712942 AAAGATTTACATT
1 AAAGATTTACATT
7712955 CGATAAATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.39, C:0.13, G:0.11, T:0.37
Consensus pattern (20 bp):
AAAGATTTACATTTGAACTC
Found at i:7712976 original size:79 final size:79
Alignment explanation
Indices: 7712868--7713096 Score: 316
Period size: 79 Copynumber: 2.9 Consensus size: 79
7712858 GTCCATAGGC
* * * * * *
7712868 TCACATTTGACAAATCTTAGGGTTTCACACCTTAAAGATTCACATTTGAAACTCAAAGATTTTCA
1 TCACATTCGATAAAT-TTTGGGTTTCACACCTCAAAGATTCTCATTTGAAATTCAAAGATTTTCA
*
7712933 TTTGAGTTCAAAGAT
65 TTTGAATTCAAAGAT
* *
7712948 TTACATTCGATAAATTTTGGGTTTCACACCTCAAAGATTCTCATTTGAAATTCAAAGATTCTCAT
1 TCACATTCGATAAATTTTGGGTTTCACACCTCAAAGATTCTCATTTGAAATTCAAAGATTTTCAT
* *
7713013 TTAAATTCGAAGAT
66 TTGAATTCAAAGAT
* *
7713027 TCACATTCGATAAATTTTGGGTTTCACATCTCAAAAATTCTCATTTGAAATTCAAAGATTCTT-A
1 TCACATTCGATAAATTTTGGGTTTCACACCTCAAAGATTCTCATTTGAAATTCAAAGATT-TTCA
7713091 TTTGAA
65 TTTGAA
7713097 AACATCTTAA
Statistics
Matches: 132, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
79 119 0.90
80 13 0.10
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (79 bp):
TCACATTCGATAAATTTTGGGTTTCACACCTCAAAGATTCTCATTTGAAATTCAAAGATTTTCAT
TTGAATTCAAAGAT
Found at i:7713004 original size:21 final size:20
Alignment explanation
Indices: 7712978--7713207 Score: 101
Period size: 21 Copynumber: 10.8 Consensus size: 20
7712968 GTTTCACACC
7712978 TCAAAGATTCTCATTTGAAAT
1 TCAAAGATTCTCATTT-AAAT
7712999 TCAAAGATTCTCATTTAAAT
1 TCAAAGATTCTCATTTAAAT
* * **
7713019 TCGAAGATTCACA-TTCGA-
1 TCAAAGATTCTCATTTAAAT
* ** *
7713037 T--AA-ATTTTGGGTTTCACAT
1 TCAAAGATTCT-CATTT-AAAT
*
7713056 CTCAAAAATTCTCATTTGAAAT
1 -TCAAAGATTCTCATTT-AAAT
*
7713078 TCAAAGATTCTTATTTGAAAACAT
1 TCAAAGATTCTCATTT---AA-AT
* *
7713102 CTTAAAGATTCTCATTTGAAAC
1 -TCAAAGATTCTCATTT-AAAT
7713124 TCAAAGATTCTCATTTGAAAAT
1 TCAAAGATTCTCATTT--AAAT
* * *
7713146 ATCTTAAAAATTCTTATTTACTAT
1 -TC--AAAGATTCTCATTTA-AAT
* *
7713170 TCAAAGATTTTCATTTGAAAAC
1 TCAAAGATTCTCATTT--AAAT
7713192 TCAAAGATTCTCATTT
1 TCAAAGATTCTCATTT
7713208 GAATATTCAG
Statistics
Matches: 156, Mismatches: 34, Indels: 37
0.69 0.15 0.16
Matches are distributed among these distances:
15 3 0.02
16 2 0.01
17 2 0.01
18 2 0.01
19 3 0.02
20 16 0.10
21 56 0.36
22 28 0.18
23 14 0.09
24 4 0.03
25 26 0.17
ACGTcount: A:0.37, C:0.15, G:0.08, T:0.39
Consensus pattern (20 bp):
TCAAAGATTCTCATTTAAAT
Found at i:7713102 original size:46 final size:46
Alignment explanation
Indices: 7713052--7713216 Score: 187
Period size: 46 Copynumber: 3.6 Consensus size: 46
7713042 TTTGGGTTTC
7713052 ACATCTCAAAAATTCTCATTTGAAATTCAAAGATTCTTATTTGAAA
1 ACATCTCAAAAATTCTCATTTGAAATTCAAAGATTCTTATTTGAAA
* * * *
7713098 ACATCTTAAAGATTCTCATTTGAAACTCAAAGATTCTCATTTGAAA
1 ACATCTCAAAAATTCTCATTTGAAATTCAAAGATTCTTATTTGAAA
* * * *
7713144 ATATCTTAAAAATTCTTATTT-ACTATTCAAAGATT-TTCATTTG-AA
1 ACATCTCAAAAATTCTCATTTGA-AATTCAAAGATTCTT-ATTTGAAA
*
7713189 A-A-CTCAAAGATTCTCATTTGAATATTCA
1 ACATCTCAAAAATTCTCATTTGAA-ATTCA
7713217 GGACTTCATT
Statistics
Matches: 101, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
43 14 0.14
44 7 0.07
45 5 0.05
46 75 0.74
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (46 bp):
ACATCTCAAAAATTCTCATTTGAAATTCAAAGATTCTTATTTGAAA
Found at i:7714468 original size:14 final size:15
Alignment explanation
Indices: 7714449--7714480 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
7714439 TTTCATCTTT
7714449 TTTCATTTTTTT-TC
1 TTTCATTTTTTTATC
7714463 TTTCATTTTTTTATC
1 TTTCATTTTTTTATC
7714478 TTT
1 TTT
7714481 TTGCCATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTCATTTTTTTATC
Found at i:7714520 original size:27 final size:26
Alignment explanation
Indices: 7714464--7714520 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
7714454 TTTTTTTTCT
* * *
7714464 TTCATTTTTTTATCTTTTTGCCATTT
1 TTCATTTTTTTATCTCTTTCCCATTC
7714490 TTCATTTTTTT-TCTCTTTCCTACATTC
1 TTCATTTTTTTATCTCTTTCC--CATTC
7714517 TTCA
1 TTCA
7714521 CCCATTATTG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 7 0.27
26 11 0.42
27 8 0.31
ACGTcount: A:0.12, C:0.21, G:0.02, T:0.65
Consensus pattern (26 bp):
TTCATTTTTTTATCTCTTTCCCATTC
Found at i:7718961 original size:15 final size:15
Alignment explanation
Indices: 7718937--7718967 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7718927 TATTTTCAAA
*
7718937 TTTTATTTTTATTTT
1 TTTTAATTTTATTTT
7718952 TTTTAATTTTATTTT
1 TTTTAATTTTATTTT
7718967 T
1 T
7718968 ATTTTTCTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTAATTTTATTTT
Found at i:7718983 original size:21 final size:21
Alignment explanation
Indices: 7718925--7718983 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
7718915 ATAATTAATA
7718925 TTTA-TTTTC-AAATTTTATT
1 TTTATTTTTCTAAATTTTATT
* *
7718944 TTTATTTTTTTTAATTTTATT
1 TTTATTTTTCTAAATTTTATT
*
7718965 TTTATTTTTCTAAAATTTA
1 TTTATTTTTCTAAATTTTA
7718984 ATCATGCAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
19 4 0.12
20 4 0.12
21 25 0.76
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.71
Consensus pattern (21 bp):
TTTATTTTTCTAAATTTTATT
Found at i:7719225 original size:20 final size:21
Alignment explanation
Indices: 7719187--7719225 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7719177 TAGATTTTTT
*
7719187 CCAAAAAATAATTTTAAAACC
1 CCAAAAAATAATTTGAAAACC
*
7719208 CCAAAAAAT-CTTTGAAAA
1 CCAAAAAATAATTTGAAAA
7719226 GTTTTCTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.56, C:0.18, G:0.03, T:0.23
Consensus pattern (21 bp):
CCAAAAAATAATTTGAAAACC
Found at i:7721162 original size:22 final size:22
Alignment explanation
Indices: 7721105--7721194 Score: 60
Period size: 22 Copynumber: 4.1 Consensus size: 22
7721095 ACTTAGTTGT
* * *
7721105 AATCATCGATAACATAATAATT
1 AATCATAGATAACTTAATAATA
* *
7721127 AATCAGTA-ACAACTTAATCATA
1 AATCA-TAGATAACTTAATAATA
* *
7721149 AATCATAGATAACTTAGTAGTA
1 AATCATAGATAACTTAATAATA
* *
7721171 TATTCAT-GA-AACTTAATATTA
1 -AATCATAGATAACTTAATAATA
7721192 AAT
1 AAT
7721195 GAATGATAAT
Statistics
Matches: 52, Mismatches: 13, Indels: 8
0.71 0.18 0.11
Matches are distributed among these distances:
20 2 0.04
21 12 0.23
22 32 0.62
23 6 0.12
ACGTcount: A:0.48, C:0.12, G:0.07, T:0.33
Consensus pattern (22 bp):
AATCATAGATAACTTAATAATA
Found at i:7721247 original size:22 final size:22
Alignment explanation
Indices: 7721147--7721258 Score: 79
Period size: 22 Copynumber: 5.0 Consensus size: 22
7721137 AACTTAATCA
7721147 TAAATC-ATAGATAACTTAGTAG
1 TAAATCAAT-GATAACTTAGTAG
* * *
7721169 TATATTC-ATGA-AACTTAATAT
1 TA-AATCAATGATAACTTAGTAG
* * *
7721190 TAAATGAATGATAATTTAGTAC
1 TAAATCAATGATAACTTAGTAG
*
7721212 TCAAT-AATTGATAACTTAGTAG
1 TAAATCAA-TGATAACTTAGTAG
*
7721234 TAAATCAATAATAACATATAGTAG
1 TAAATCAATGATAAC-T-TAGTAG
7721258 T
1 T
7721259 TGCATAATAA
Statistics
Matches: 70, Mismatches: 13, Indels: 12
0.74 0.14 0.13
Matches are distributed among these distances:
20 2 0.03
21 16 0.23
22 37 0.53
23 8 0.11
24 7 0.10
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.36
Consensus pattern (22 bp):
TAAATCAATGATAACTTAGTAG
Found at i:7721652 original size:21 final size:21
Alignment explanation
Indices: 7721628--7721669 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7721618 GAAATTGACT
*
7721628 CTGGTGAGATTAATTACTGTA
1 CTGGTAAGATTAATTACTGTA
* *
7721649 CTGGTAATATTATTTACTGTA
1 CTGGTAAGATTAATTACTGTA
7721670 AAGCTGAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.43
Consensus pattern (21 bp):
CTGGTAAGATTAATTACTGTA
Found at i:7728007 original size:30 final size:30
Alignment explanation
Indices: 7727938--7728008 Score: 88
Period size: 30 Copynumber: 2.4 Consensus size: 30
7727928 AATTTTATTG
*
7727938 TATCTAAATAAACCCTTAACCTTGAATTTA
1 TATCTAAATAAACCCTTAAACTTGAATTTA
* * * *
7727968 CATTTAAATAAACCCTTAAATTTTAATTTA
1 TATCTAAATAAACCCTTAAACTTGAATTTA
*
7727998 TATCCAAATAA
1 TATCTAAATAA
7728009 GCTACTAATC
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.44, C:0.17, G:0.01, T:0.38
Consensus pattern (30 bp):
TATCTAAATAAACCCTTAAACTTGAATTTA
Found at i:7729278 original size:15 final size:15
Alignment explanation
Indices: 7729260--7729289 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7729250 TTTCAAAACA
7729260 AAAAAATATAAAAAT
1 AAAAAATATAAAAAT
*
7729275 AAAAAATATACAAAT
1 AAAAAATATAAAAAT
7729290 TTTGAAATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (15 bp):
AAAAAATATAAAAAT
Found at i:7730985 original size:45 final size:45
Alignment explanation
Indices: 7730881--7730988 Score: 117
Period size: 50 Copynumber: 2.3 Consensus size: 45
7730871 TGTGCATCAC
* * *
7730881 AACATTATCATATCATTATATGCATCATTTTCATCCTCATGTTTT
1 AACATTATCATTTAATTATATGCATCATTTTCATCATCATGTTTT
* * *
7730926 AACATTTCCATATCATTTAATTCTATGCATCATTTTCATGATTATGTTTT
1 AACA--T---TATCATTTAATTATATGCATCATTTTCATCATCATGTTTT
7730976 AACATTATCATTT
1 AACATTATCATTT
7730989 GCATCATTCT
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
45 12 0.23
47 1 0.02
48 1 0.02
50 38 0.73
ACGTcount: A:0.30, C:0.18, G:0.05, T:0.48
Consensus pattern (45 bp):
AACATTATCATTTAATTATATGCATCATTTTCATCATCATGTTTT
Found at i:7732193 original size:14 final size:15
Alignment explanation
Indices: 7732164--7732201 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
7732154 TCTTTATTTA
7732164 ATATTTTAGTAGTTTTG
1 ATATTTTA--AGTTTTG
7732181 A-ATTTTAAGTTTTG
1 ATATTTTAAGTTTTG
7732195 ATATTTT
1 ATATTTT
7732202 TTAGTAGTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 8 0.40
15 5 0.25
16 6 0.30
17 1 0.05
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.61
Consensus pattern (15 bp):
ATATTTTAAGTTTTG
Found at i:7733769 original size:15 final size:15
Alignment explanation
Indices: 7733738--7733776 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
7733728 CATAAATAAC
*
7733738 GTAATAA-TTAATTA
1 GTAATAACTTAATCA
7733752 GTAATAACTTAATCA
1 GTAATAACTTAATCA
7733767 GT-ATAACTTA
1 GTAATAACTTA
7733777 TTTTTTATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 15 0.65
15 8 0.35
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (15 bp):
GTAATAACTTAATCA
Found at i:7737957 original size:21 final size:21
Alignment explanation
Indices: 7737898--7737958 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 21
7737888 ATTTATTAAT
* *
7737898 TAATCATTAAAAATGTAAAAG
1 TAATCATTAATAATGTAATAG
* *
7737919 TAATCA-TAATAATTTAATTG
1 TAATCATTAATAATGTAATAG
*
7737939 TAATCATTGATAATGTAATA
1 TAATCATTAATAATGTAATA
7737959 ATTAATTAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
20 16 0.50
21 16 0.50
ACGTcount: A:0.49, C:0.05, G:0.08, T:0.38
Consensus pattern (21 bp):
TAATCATTAATAATGTAATAG
Found at i:7737987 original size:14 final size:15
Alignment explanation
Indices: 7737954--7737991 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
7737944 ATTGATAATG
*
7737954 TAATAA-TTAATTAA
1 TAATAACTTAATCAA
7737968 TAATAACTTAATCAA
1 TAATAACTTAATCAA
7737983 T-ATAACTTA
1 TAATAACTTA
7737992 TTTTTAATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 14 0.64
15 8 0.36
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (15 bp):
TAATAACTTAATCAA
Found at i:7743668 original size:14 final size:15
Alignment explanation
Indices: 7743635--7743672 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
7743625 ATTAATAACG
7743635 TAATAA-TTAATCAA
1 TAATAACTTAATCAA
*
7743649 TAATAACTTAATCAG
1 TAATAACTTAATCAA
7743664 T-ATAACTTA
1 TAATAACTTA
7743673 TTTTTAATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 14 0.64
15 8 0.36
ACGTcount: A:0.50, C:0.11, G:0.03, T:0.37
Consensus pattern (15 bp):
TAATAACTTAATCAA
Found at i:7746353 original size:51 final size:51
Alignment explanation
Indices: 7746288--7746399 Score: 129
Period size: 51 Copynumber: 2.2 Consensus size: 51
7746278 TTATCTCTAT
* * * *
7746288 ATAAAATATGAATTCTAAAAATGA-TAATAGTGA-TCGATTAAAACACATTTA
1 ATAAAATTTTAATTCTAAAAAT-ATTAAAAGTGAGT-GACTAAAACACATTTA
* * *
7746339 ATAAAATTTTAATTCTTAAAATATTAAAAGTGAGTGACTAAAATACTTTTA
1 ATAAAATTTTAATTCTAAAAATATTAAAAGTGAGTGACTAAAACACATTTA
7746390 ATAAAATTTT
1 ATAAAATTTT
7746400 TAATAAATTT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
50 1 0.02
51 50 0.96
52 1 0.02
ACGTcount: A:0.49, C:0.06, G:0.08, T:0.37
Consensus pattern (51 bp):
ATAAAATTTTAATTCTAAAAATATTAAAAGTGAGTGACTAAAACACATTTA
Found at i:7746439 original size:14 final size:14
Alignment explanation
Indices: 7746422--7746448 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7746412 ATTTAATTAT
7746422 TTTTTATTATTAAC
1 TTTTTATTATTAAC
7746436 TTTTTATTATTAA
1 TTTTTATTATTAA
7746449 ATTCTCATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTTTATTATTAAC
Found at i:7751542 original size:44 final size:41
Alignment explanation
Indices: 7751479--7751570 Score: 96
Period size: 44 Copynumber: 2.2 Consensus size: 41
7751469 TAAATCAAAA
* * * *
7751479 ATAATTTATTAAAAAAATGATAATTTAATAGTTAATT-ATC
1 ATAATTTAGTAAAAAAATGATAACTTAATAATAAATTAATC
*
7751519 GATAATTTAGTAATAAATCAATGATTACTTAATAATAAATTAATC
1 -ATAATTTAGTAA-AAA--AATGATAACTTAATAATAAATTAATC
7751564 ATAATTT
1 ATAATTT
7751571 GATAGTAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
41 11 0.26
42 3 0.07
44 25 0.60
45 3 0.07
ACGTcount: A:0.49, C:0.04, G:0.05, T:0.41
Consensus pattern (41 bp):
ATAATTTAGTAAAAAAATGATAACTTAATAATAAATTAATC
Found at i:7752260 original size:15 final size:14
Alignment explanation
Indices: 7752238--7752267 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
7752228 ATTAATAACA
7752238 TAATAATTAATCAG
1 TAATAATTAATCAG
7752252 TAATGAATTAATCAG
1 TAAT-AATTAATCAG
7752267 T
1 T
7752268 GTAACTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.47, C:0.07, G:0.10, T:0.37
Consensus pattern (14 bp):
TAATAATTAATCAG
Found at i:7754910 original size:22 final size:23
Alignment explanation
Indices: 7754874--7754916 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
7754864 GATATAGTGG
*
7754874 AAAAATTAAGAAATAAAACTATA
1 AAAAACTAAGAAATAAAACTATA
7754897 AAAAACTAAG-AATAAAACTA
1 AAAAACTAAGAAATAAAACTA
7754917 AATATATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.70, C:0.07, G:0.05, T:0.19
Consensus pattern (23 bp):
AAAAACTAAGAAATAAAACTATA
Found at i:7755849 original size:17 final size:17
Alignment explanation
Indices: 7755827--7755859 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7755817 TATCATGTAT
7755827 ATATTA-TTCTTATTATA
1 ATATTACTT-TTATTATA
7755844 ATATTACTTTTATTAT
1 ATATTACTTTTATTAT
7755860 TTTTTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (17 bp):
ATATTACTTTTATTATA
Found at i:7759890 original size:214 final size:215
Alignment explanation
Indices: 7759499--7759923 Score: 690
Period size: 214 Copynumber: 2.0 Consensus size: 215
7759489 TGCAAGGATA
*
7759499 AAACATGAAGCAGAGAAAAAAAAAACTGAAACAAGAAATTCTGAAGCTTCAGGAAGAAAACGACC
1 AAACATGAAGCAGAGAAAAAAAAAACTGAAACAAGAAATTCTGAAGCTTCAGGAAAAAAACGACC
* * * *
7759564 AGTTACGAAATAAAGTAAAAAAATTAGAAATCCAAGTCCATAGGATTTCTAAGGAATACAGCAAG
66 AGTTACGAAATAAAGCAAAAAAACTAGAAATCCAAGTCCATAGGATTTCTAAAGAATACAACAAG
* * * * *
7759629 GCCCAAAAAGTTATCAGAGAATAGGATGATGCCCTTAAAGAATTAAAGGAGCTACAATAATAGTA
131 GCCCAAAAAGTTATCAGAGAATAGGATGATGCCCTTAAAAAATTAAAGAAACTACAATAAGAGCA
*
7759694 CAAGAGGTTGCACATACATG
196 CAAAAGGTTGCACATACATG
* * *
7759714 AAACATGAAGTAGAG-AAAAAGAAACTGAAACAAGAAATTCTGAAGCTTCAGGAAAAAAATGACC
1 AAACATGAAGCAGAGAAAAAAAAAACTGAAACAAGAAATTCTGAAGCTTCAGGAAAAAAACGACC
*
7759778 AGTTGCGAAATAAAGCAAAAAAACTAGAAATCCAAGTCCATAGGATTTCTAAAGAATACAACAAG
66 AGTTACGAAATAAAGCAAAAAAACTAGAAATCCAAGTCCATAGGATTTCTAAAGAATACAACAAG
* *
7759843 GCCCAAAAAGTTATCAGAGAATATGATGATGCCCTTAAAAAATTAAAGAAACTGCAATAAGAGCA
131 GCCCAAAAAGTTATCAGAGAATAGGATGATGCCCTTAAAAAATTAAAGAAACTACAATAAGAGCA
7759908 CAAAAGGTTGCACATA
196 CAAAAGGTTGCACATA
7759924 TAGGTGTAGA
Statistics
Matches: 193, Mismatches: 17, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
214 179 0.93
215 14 0.07
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (215 bp):
AAACATGAAGCAGAGAAAAAAAAAACTGAAACAAGAAATTCTGAAGCTTCAGGAAAAAAACGACC
AGTTACGAAATAAAGCAAAAAAACTAGAAATCCAAGTCCATAGGATTTCTAAAGAATACAACAAG
GCCCAAAAAGTTATCAGAGAATAGGATGATGCCCTTAAAAAATTAAAGAAACTACAATAAGAGCA
CAAAAGGTTGCACATACATG
Found at i:7768313 original size:334 final size:334
Alignment explanation
Indices: 7767717--7768374 Score: 1262
Period size: 334 Copynumber: 2.0 Consensus size: 334
7767707 GGACAAATGG
7767717 AATATGGCATAACTTGAGACAGTGAATTTCAAAGAATTTTGAGGTGTCAGGGCATCATATTTTGG
1 AATATGGCATAACTTGAGACAGTGAATTTCAAAGAATTTTGAGGTGTCAGGGCATCATATTTTGG
* *
7767782 TTGAGTTTTTGAAAAAAATCTAAGATTTGTTGTCATGTATTATTTGATCATTTGTCTTGAAGGCA
66 TTGAGTTTTTGAAAAAAATCTAAGATTTATTGTCATGTATTATCTGATCATTTGTCTTGAAGGCA
*
7767847 TTGCTACCCTAAATAACCGCTTCTATGCACTCACATTTGGTTTTTATGCTATCATCTGTAATTTA
131 TTGCTACCCTAAATAACCGCCTCTATGCACTCACATTTGGTTTTTATGCTATCATCTGTAATTTA
*
7767912 TTACTTATTCAAATAAATTATAGTCATCCTATTTTTTTTTTTAATTTTATACCTCGCCAATAAAT
196 TTACTTATTCAAATAAATTATAGTCATCCTATTTTTTTTTGTAATTTTATACCTCGCCAATAAAT
7767977 ATTTGTCCTTTCTCCTTATACCTTGCCATGAATAGAAGAAGTGCATAACTTTATCTCATATCTTG
261 ATTTGTCCTTTCTCCTTATACCTTGCCATGAATAGAAGAAGTGCATAACTTTATCTCATATCTTG
7768042 GACGAACGA
326 GACGAACGA
7768051 AATATGGCATAACTTGAGACAGTGAATTTCAAAGAATTTTGAGGTGTCAGGGCATCATATTTTGG
1 AATATGGCATAACTTGAGACAGTGAATTTCAAAGAATTTTGAGGTGTCAGGGCATCATATTTTGG
7768116 TTGAGTTTTTGAAAAAAATCTAAGATTTATTGTCATGTATTATCTGATCATTTGTCTTGAAGGCA
66 TTGAGTTTTTGAAAAAAATCTAAGATTTATTGTCATGTATTATCTGATCATTTGTCTTGAAGGCA
* *
7768181 TTGCTACCCTAAATAACCGCCTCTATGCATTCTCATTTGGTTTTTATGCTATCATCTGTAATTTA
131 TTGCTACCCTAAATAACCGCCTCTATGCACTCACATTTGGTTTTTATGCTATCATCTGTAATTTA
7768246 TTACTTATTCAAATAAATTATAGTCATCCTATTTTTTTTTGTAATTTTATACCTCGCCAATAAAT
196 TTACTTATTCAAATAAATTATAGTCATCCTATTTTTTTTTGTAATTTTATACCTCGCCAATAAAT
7768311 ATTTGTCCTTTCTCCTTATACCTTGCCATGAATAGAAGAAGTGCATAACTTTATCTCATATCTT
261 ATTTGTCCTTTCTCCTTATACCTTGCCATGAATAGAAGAAGTGCATAACTTTATCTCATATCTT
7768375 AAAATTGATA
Statistics
Matches: 318, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
334 318 1.00
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (334 bp):
AATATGGCATAACTTGAGACAGTGAATTTCAAAGAATTTTGAGGTGTCAGGGCATCATATTTTGG
TTGAGTTTTTGAAAAAAATCTAAGATTTATTGTCATGTATTATCTGATCATTTGTCTTGAAGGCA
TTGCTACCCTAAATAACCGCCTCTATGCACTCACATTTGGTTTTTATGCTATCATCTGTAATTTA
TTACTTATTCAAATAAATTATAGTCATCCTATTTTTTTTTGTAATTTTATACCTCGCCAATAAAT
ATTTGTCCTTTCTCCTTATACCTTGCCATGAATAGAAGAAGTGCATAACTTTATCTCATATCTTG
GACGAACGA
Found at i:7769494 original size:3 final size:3
Alignment explanation
Indices: 7769464--7769527 Score: 87
Period size: 3 Copynumber: 21.7 Consensus size: 3
7769454 TCATGTATAA
* *
7769464 ATT ATT CTT ATT A-T AAT ATT ACTT -TT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT
7769508 ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT AT
7769528 CATCTTTTTT
Statistics
Matches: 55, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
2 4 0.07
3 49 0.89
4 2 0.04
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:7774249 original size:115 final size:116
Alignment explanation
Indices: 7774040--7774267 Score: 298
Period size: 116 Copynumber: 2.0 Consensus size: 116
7774030 CCCCGTTCGA
* * * * *
7774040 TCTCAGGGTTTTATCTTGGAACCTCACAAGTTAGACCAACTTTAATACAGTTACATCTCAAAACT
1 TCTCACGGTTTTATCTCGGAACCTCACAAGTTAGACCAACTCTAATACACTTACATCTCAAAACC
* *
7774105 AACTCTATTAAAAGGTGAGGCCTTACAAGTTAAAGTTGTTCACTCATTTAG
66 AACTCTATTAAAAGGTGAGGCCTTACAAGTTAAAGGTGTTCACCCATTTAG
* * * * * ** *
7774156 TCTCACGGTTTTGTCTCGGAGCCTTACAAGTTAGACTAACTCTAGTACACTTATGTCT-TAAACC
1 TCTCACGGTTTTATCTCGGAACCTCACAAGTTAGACCAACTCTAATACACTTACATCTCAAAACC
7774220 AACTCTAGTT-AAAGGTGAGGCCTTACAAGTTAAAGGTGTTCACCCATT
66 AACTCTA-TTAAAAGGTGAGGCCTTACAAGTTAAAGGTGTTCACCCATT
7774268 GGATTTCATG
Statistics
Matches: 96, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
115 47 0.49
116 49 0.51
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32
Consensus pattern (116 bp):
TCTCACGGTTTTATCTCGGAACCTCACAAGTTAGACCAACTCTAATACACTTACATCTCAAAACC
AACTCTATTAAAAGGTGAGGCCTTACAAGTTAAAGGTGTTCACCCATTTAG
Found at i:7774281 original size:115 final size:116
Alignment explanation
Indices: 7774040--7774303 Score: 302
Period size: 115 Copynumber: 2.3 Consensus size: 116
7774030 CCCCGTTCGA
* * * * * * *
7774040 TCTCAGGGTTTTATCTTGGAACCTCACAAGTTAGACCAACTTTAATACAGTTACATCTCAAAACT
1 TCTCACGGTTTTGTCTAGGAGCCTCACAAGTTAGACCAACTCTAATACACTTACATCTCAAAACC
* * *
7774105 AACTCTATTAAAAGGTGAGGCCTTACAAGTTAAAGTTGTTCACTCATTTAG
66 AACTCTATTAAAAGGTGAGGCCTTACAAGTTAAAGGTGTTCACCCATTGAG
* * * * ** *
7774156 TCTCACGGTTTTGTCTCGGAGCCTTACAAGTTAGACTAACTCTAGTACACTTATGTCT-TAAACC
1 TCTCACGGTTTTGTCTAGGAGCCTCACAAGTTAGACCAACTCTAATACACTTACATCTCAAAACC
7774220 AACTCTAGTT-AAAGGTGAGGCCTTACAAGTTAAAGGTGTTCACCCATTG-G
66 AACTCTA-TTAAAAGGTGAGGCCTTACAAGTTAAAGGTGTTCACCCATTGAG
* *
7774270 ATTTCATGGTTTTGTCATAGG-GCCTCACAAGTTA
1 -TCTCACGGTTTTGTC-TAGGAGCCTCACAAGTTA
7774304 AAGGTAGTGT
Statistics
Matches: 125, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
114 1 0.01
115 72 0.58
116 52 0.42
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (116 bp):
TCTCACGGTTTTGTCTAGGAGCCTCACAAGTTAGACCAACTCTAATACACTTACATCTCAAAACC
AACTCTATTAAAAGGTGAGGCCTTACAAGTTAAAGGTGTTCACCCATTGAG
Found at i:7777400 original size:22 final size:22
Alignment explanation
Indices: 7777375--7777417 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7777365 TTTTCTATCA
7777375 TTAATTCTAAAGATACAAATAC
1 TTAATTCTAAAGATACAAATAC
* * *
7777397 TTAATTTTAGATATACAAATA
1 TTAATTCTAAAGATACAAATA
7777418 TAAATATACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.49, C:0.09, G:0.05, T:0.37
Consensus pattern (22 bp):
TTAATTCTAAAGATACAAATAC
Found at i:7777426 original size:14 final size:15
Alignment explanation
Indices: 7777407--7777456 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 15
7777397 TTAATTTTAG
7777407 ATATACAAA-TATAA
1 ATATACAAATTATAA
7777421 ATATACAAATTATAA
1 ATATACAAATTATAA
*
7777436 TATTATAACCAATTATAA
1 -A-TAT-ACAAATTATAA
7777454 ATA
1 ATA
7777457 AATATTTTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
14 9 0.29
15 5 0.16
16 3 0.10
17 4 0.13
18 10 0.32
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.34
Consensus pattern (15 bp):
ATATACAAATTATAA
Found at i:7794785 original size:111 final size:111
Alignment explanation
Indices: 7794599--7794809 Score: 359
Period size: 111 Copynumber: 1.9 Consensus size: 111
7794589 AAGAGGAACG
* * *
7794599 TTGCCTACTAAGTCCAACTCAGATTTTGTTGGCTTTTTCAGGATATTATCAGATTCTCCAGTTGC
1 TTGCCTACTAAGTCCAACTCAGATTCTGTTGACTTTCTCAGGATATTATCAGATTCTCCAGTTGC
* *
7794664 CACAAGCTTCCCTTTGCTGTCAGTACCAAACAAAGACCGAGGATCA
66 CACAAGCTTCCCTTGGCTGTCACTACCAAACAAAGACCGAGGATCA
*
7794710 TTGCCTACTAAGTCCAACTCAGATTCTGTTGACTTTCTCAGGATATTGTCAGATTCTCCAGTTGC
1 TTGCCTACTAAGTCCAACTCAGATTCTGTTGACTTTCTCAGGATATTATCAGATTCTCCAGTTGC
*
7794775 CACAAGCTTCCCTTGGCTGTCACTATCAAACAAAG
66 CACAAGCTTCCCTTGGCTGTCACTACCAAACAAAG
7794810 TCCTAGAGTG
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
111 93 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (111 bp):
TTGCCTACTAAGTCCAACTCAGATTCTGTTGACTTTCTCAGGATATTATCAGATTCTCCAGTTGC
CACAAGCTTCCCTTGGCTGTCACTACCAAACAAAGACCGAGGATCA
Done.