Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 43 of 117
Found at i:7795059 original size:27 final size:27
Alignment explanation
Indices: 7795029--7795097 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 27
7795019 TCCACAGCAT
*
7795029 TACTAGCATTAGAACCTGCTGTAACAC
1 TACTAGCAGTAGAACCTGCTGTAACAC
* *
7795056 TACTAGCAGTAGAACTTGCTGTAACAA
1 TACTAGCAGTAGAACCTGCTGTAACAC
* *
7795083 TACGAGAAGTAGAAC
1 TACTAGCAGTAGAAC
7795098 TTGCGGCAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.23
Consensus pattern (27 bp):
TACTAGCAGTAGAACCTGCTGTAACAC
Found at i:7795257 original size:105 final size:105
Alignment explanation
Indices: 7795134--7795345 Score: 370
Period size: 105 Copynumber: 2.0 Consensus size: 105
7795124 CTAGCTGCAA
*
7795134 CACCAGTAATAGTTAAATTCCCAGCAGCTACACTAGCATTTGAACTCCCTACTACACCACTAGTG
1 CACCAGTAACAGTTAAATTCCCAGCAGCTACACTAGCATTTGAACTCCCTACTACACCACTAGTG
* * *
7795199 TTTAACCTTGCTTCACCACCACTGATGTTTGAACTCGTTG
66 TTTAAACTTGCTTCAACACCACCGATGTTTGAACTCGTTG
*
7795239 CACCAGTAACAGTTAAATTCCCAGCAGCTACACTAGCATTTGAACTCCCTACTGCACCACTAGTG
1 CACCAGTAACAGTTAAATTCCCAGCAGCTACACTAGCATTTGAACTCCCTACTACACCACTAGTG
*
7795304 TTTAAACTTGCTTCAACACCACCGATGTTTGAGCTCGTTG
66 TTTAAACTTGCTTCAACACCACCGATGTTTGAACTCGTTG
7795344 CA
1 CA
7795346 ACAATGCTAT
Statistics
Matches: 101, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
105 101 1.00
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (105 bp):
CACCAGTAACAGTTAAATTCCCAGCAGCTACACTAGCATTTGAACTCCCTACTACACCACTAGTG
TTTAAACTTGCTTCAACACCACCGATGTTTGAACTCGTTG
Found at i:7795309 original size:54 final size:54
Alignment explanation
Indices: 7795146--7795309 Score: 139
Period size: 54 Copynumber: 3.1 Consensus size: 54
7795136 CCAGTAATAG
*
7795146 TTAAATTCCCAGCAGCTACACTAGCATTTGAACTCCCTACTACACCACTAGTGT
1 TTAAATTCCCAGCAGCTACACTAGCATTTGAACTCCCTACTGCACCACTAGTGT
* * * * * **
7795200 TTAACCTTGCTTCACCA-C--CACT-G-ATGTTTGAACT-CGT--TGCACCAGTAACAG-
1 TTAA-ATT-C-CCAGCAGCTACACTAGCA--TTTGAACTCCCTACTGCACCACT-AGTGT
7795251 TTAAATTCCCAGCAGCTACACTAGCATTTGAACTCCCTACTGCACCACTAGTGT
1 TTAAATTCCCAGCAGCTACACTAGCATTTGAACTCCCTACTGCACCACTAGTGT
7795305 TTAAA
1 TTAAA
7795310 CTTGCTTCAA
Statistics
Matches: 80, Mismatches: 15, Indels: 30
0.64 0.12 0.24
Matches are distributed among these distances:
48 4 0.05
49 2 0.03
50 2 0.03
51 23 0.29
52 6 0.08
53 6 0.08
54 29 0.36
55 2 0.03
56 2 0.03
57 4 0.05
ACGTcount: A:0.29, C:0.30, G:0.13, T:0.29
Consensus pattern (54 bp):
TTAAATTCCCAGCAGCTACACTAGCATTTGAACTCCCTACTGCACCACTAGTGT
Found at i:7795335 original size:54 final size:54
Alignment explanation
Indices: 7795172--7795335 Score: 119
Period size: 54 Copynumber: 3.1 Consensus size: 54
7795162 TACACTAGCA
* * * *
7795172 TTTGAACTCCCTACTACACCACTAGTGTTTAACCTTGCTTCACCACCACTGATG
1 TTTGAACTCCCTACTGCACCACTAGTGTTTAAACTTGCTTCAACACCACCGATG
* * ** * * * *
7795226 TTTGAACT-CGT--TGCACCAGTAACAG-TTAAA-TT-C-CCAGCAGCTACACTA-G
1 TTTGAACTCCCTACTGCACCACT-AGTGTTTAAACTTGCTTCAACA-CCAC-CGATG
7795275 CATTTGAACTCCCTACTGCACCACTAGTGTTTAAACTTGCTTCAACACCACCGATG
1 --TTTGAACTCCCTACTGCACCACTAGTGTTTAAACTTGCTTCAACACCACCGATG
7795331 TTTGA
1 TTTGA
7795336 GCTCGTTGCA
Statistics
Matches: 78, Mismatches: 19, Indels: 26
0.63 0.15 0.21
Matches are distributed among these distances:
48 4 0.05
49 5 0.06
50 3 0.04
51 19 0.24
52 4 0.05
53 4 0.05
54 26 0.33
55 4 0.05
56 5 0.06
57 4 0.05
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.30
Consensus pattern (54 bp):
TTTGAACTCCCTACTGCACCACTAGTGTTTAAACTTGCTTCAACACCACCGATG
Found at i:7796676 original size:19 final size:19
Alignment explanation
Indices: 7796654--7796696 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
7796644 CTATTCATTT
* *
7796654 ATTTTATATTTATTGTTTA
1 ATTTTATATTTAATGATTA
*
7796673 ATTTTATTTTTAATGATTA
1 ATTTTATATTTAATGATTA
7796692 ATTTT
1 ATTTT
7796697 TTAAAAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (19 bp):
ATTTTATATTTAATGATTA
Found at i:7797300 original size:18 final size:18
Alignment explanation
Indices: 7797279--7797625 Score: 163
Period size: 18 Copynumber: 19.6 Consensus size: 18
7797269 AATTTTACTT
7797279 ATAAATAATATTATATTA
1 ATAAATAATATTATATTA
*
7797297 ATAAATAA-ATAATATT-
1 ATAAATAATATTATATTA
*
7797313 AT-ATTACA-A-TATATTA
1 ATAAATA-ATATTATATTA
* *
7797329 ATAGATAATATTATATGA
1 ATAAATAATATTATATTA
7797347 ATAAATAATA-TACTATTA
1 ATAAATAATATTA-TATTA
7797365 AT--AT-A-A-TATATTA
1 ATAAATAATATTATATTA
*
7797378 ATAAA-AATATCA-A-TA
1 ATAAATAATATTATATTA
* *
7797393 ATTATTATAATA-TACTCATAA
1 A-TA-AATAATATTA-T-ATTA
*
7797414 AT-AATACTATTATATATTA
1 ATAAATAATA-T-TATATTA
*
7797433 ATAAATAATATAATATTA
1 ATAAATAATATTATATTA
* *
7797451 ATAAATATTATTATAAATAA
1 ATAAATAATATTAT--ATTA
7797471 ATATATACTAATCATTAATATTA
1 ATA-A-A-TAAT-ATT-ATATTA
7797494 ATAAATAATATTATATTA
1 ATAAATAATATTATATTA
* *
7797512 ATTAATAA-ATAATATTA
1 ATAAATAATATTATATTA
*
7797529 TATTAATTAATCA-TATATTA
1 -A-TAAATAAT-ATTATATTA
7797549 ATAAATAATA-TACTATTA
1 ATAAATAATATTA-TATTA
*
7797567 AT--AT-A-A-TATATCA
1 ATAAATAATATTATATTA
*
7797580 ATAAATATTATTA-A-TA
1 ATAAATAATATTATATTA
*
7797596 A-AAATATTATAATATATTA
1 ATAAATA--ATATTATATTA
7797615 ATAAATAATAT
1 ATAAATAATAT
7797626 AAAGAATAAT
Statistics
Matches: 251, Mismatches: 34, Indels: 88
0.67 0.09 0.24
Matches are distributed among these distances:
13 13 0.05
14 6 0.02
15 22 0.09
16 17 0.07
17 32 0.13
18 90 0.36
19 18 0.07
20 30 0.12
21 7 0.03
22 2 0.01
23 9 0.04
24 3 0.01
25 2 0.01
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (18 bp):
ATAAATAATATTATATTA
Found at i:7797310 original size:43 final size:42
Alignment explanation
Indices: 7797263--7797625 Score: 174
Period size: 43 Copynumber: 8.6 Consensus size: 42
7797253 TTAATATTTT
*
7797263 TAATATAATTTTACTTATAAATAATATTATATTAATAAATAAA
1 TAATATAATATTA-TTATAAATAATATTATATTAATAAATAAA
* ** * * *
7797306 TAATATTATATTACAATATATTAATAGATAATATTATATGAATAAA
1 TAATATAATATTATTATA-AATAAT--ATTATATTA-ATAAATAAA
* * ** *
7797352 TAATATACTATTAATAT-AAT-ATATTAATAAAAATATCAATAAT
1 TAATATAATATTATTATAAATAATATT-ATATTAATA--AATAAA
* * * *
7797395 TATTATAATA-TACTCATAAATAATACTAT-TATATATTAATAAA
1 TAATATAATATTA-TTATAAATAATATTATAT-TA-ATAAATAAA
*
7797438 TAATATAATATTA--ATAAATATTATTATA--AATAAATATATA
1 TAATATAATATTATTATAAATAATATTATATTAATAAATA-A-A
*
7797478 CTAATCATTAATATTA--ATAAATAATATTATATTAATTAATAAA
1 -TAAT-A-TAATATTATTATAAATAATATTATATTAATAAATAAA
*
7797521 TAATAT--TA-TA-T-TAATTAATCA-TATATTAATAAATAATA
1 TAATATAATATTATTATAAATAAT-ATTATATTAATAAATAA-A
* * *
7797559 TACTATTAATATAATATATCAATAA-A-TATTATTAAT-AA-AAA
1 TAATA-TAATATTAT-TATAAATAATATTA-TATTAATAAATAAA
*
7797600 TATTATAATA-TATTAATAAATAATAT
1 TAATATAATATTATT-ATAAATAATAT
7797626 AAAGAATAAT
Statistics
Matches: 244, Mismatches: 41, Indels: 72
0.68 0.11 0.20
Matches are distributed among these distances:
37 23 0.09
38 15 0.06
39 12 0.05
40 8 0.03
41 28 0.11
42 17 0.07
43 75 0.31
44 19 0.08
45 26 0.11
46 21 0.09
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (42 bp):
TAATATAATATTATTATAAATAATATTATATTAATAAATAAA
Found at i:7797406 original size:32 final size:31
Alignment explanation
Indices: 7797340--7797627 Score: 154
Period size: 31 Copynumber: 9.6 Consensus size: 31
7797330 TAGATAATAT
*
7797340 TATATGAATAAATAATATACTATTAATATAA
1 TATATGAATAAATAATATAATATTAATATAA
* *
7797371 TATATTAATAAA-AATATCAATAATTATTATAA
1 TATATGAATAAATAATAT-AAT-ATTAATATAA
* *
7797403 TATACT-CATAAAT-A-ATACTA-T--TAT-A
1 TATA-TGAATAAATAATATAATATTAATATAA
7797428 TAT-T-AATAAATAATATAATATTAATA-AA
1 TATATGAATAAATAATATAATATTAATATAA
* *
7797456 TATTAT-TATAAATAA-ATATATACTAATCATTAA
1 TA-TATGAATAAATAATATA-ATATTAAT-A-TAA
*
7797489 TAT-T-AATAAATAATATTATATTAAT-TAA
1 TATATGAATAAATAATATAATATTAATATAA
* * *
7797517 TAAAT-AAT--ATTATATTA-ATTAATCAT-A
1 TATATGAATAAATAATATAATATTAAT-ATAA
*
7797544 TAT-T-AATAAATAATATACTATTAATATAA
1 TATATGAATAAATAATATAATATTAATATAA
* * * *
7797573 TATATCAATAAATATTATTAATAAAAATATTATAA
1 TATATGAATAAATA--A-T-ATAATATTAATATAA
*
7797608 TATATTAATAAATAATATAA
1 TATATGAATAAATAATATAA
7797628 AGAATAATAA
Statistics
Matches: 204, Mismatches: 23, Indels: 60
0.71 0.08 0.21
Matches are distributed among these distances:
23 7 0.03
24 1 0.00
25 9 0.04
26 14 0.07
27 11 0.05
28 20 0.10
29 19 0.09
30 24 0.12
31 44 0.22
32 23 0.11
33 7 0.03
34 1 0.00
35 24 0.12
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (31 bp):
TATATGAATAAATAATATAATATTAATATAA
Found at i:7797443 original size:38 final size:34
Alignment explanation
Indices: 7797399--7797566 Score: 94
Period size: 37 Copynumber: 4.8 Consensus size: 34
7797389 AATAATTATT
*
7797399 ATAATATACTCATAAATAATACTATTATATATTAATAA
1 ATAATATACT-ATAAATAA-A-TATTAT-TATAAATAA
* *
7797437 ATAATATAATATTAATAAATATTATTATAAATAA
1 ATAATATACTATAAATAAATATTATTATAAATAA
* *
7797471 AT-ATATACTA-ATCATTAATATTA--ATAAAT-A
1 ATAATATACTATA-AATAAATATTATTATAAATAA
* * * * *
7797501 ATATTATATTAATTAATAAATAATATTATATTAATTA
1 ATAATATACT-ATAAATAAATATTATTATA--AATAA
* * *
7797538 ATCATATATTAATAAATAATATACTATTA
1 ATAATATACT-ATAAATAA-ATATTATTA
7797567 ATATAATATA
Statistics
Matches: 103, Mismatches: 17, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
30 3 0.03
31 11 0.11
32 9 0.09
33 16 0.16
34 13 0.13
35 6 0.06
36 4 0.04
37 24 0.23
38 17 0.17
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (34 bp):
ATAATATACTATAAATAAATATTATTATAAATAA
Found at i:7797454 original size:61 final size:60
Alignment explanation
Indices: 7797333--7797627 Score: 193
Period size: 61 Copynumber: 4.8 Consensus size: 60
7797323 ATATTAATAG
* * * * *
7797333 ATAATATTATATGAATAAATAATATACTATTA-ATA-TAATATATTAATAAAAATATCAATAATT
1 ATAATAATATAT-AATAAAT-A-ATACTATCATATATTAATA-AATAAT-ATAATATTAATAATT
* * *
7797396 ATTATAATATACTCATAAATAATACTATTATATATTAATAAATAATATAATATTAATAA--
1 ATAATAATATA-TAATAAATAATACTATCATATATTAATAAATAATATAATATTAATAATT
* * *
7797455 ATATTATTATA-AATAAATATATACTAATCATTAATATTAATAAATAATATTATATTAATTAA-T
1 ATAATAATATATAATAAATA-ATACT-ATCA-T-ATATTAATAAATAATATAATATTAA-TAATT
* *
7797518 A-AATAATAT-T-AT-ATTAAT--TAATCATATATTAATAAATAATATACTATTAATATAATAT
1 ATAATAATATATAATAAATAATACT-ATCATATATTAATAAATAATATAATATT-A-ATAAT-T
* *
7797576 ATCAATAAATATTATTAATAAA-AATATTATAATATATTAATAAATAATATAA
1 AT-AAT-AATA-TA-TAATAAATAATACTATCATATATTAATAAATAATATAA
7797628 AGAATAATAA
Statistics
Matches: 188, Mismatches: 20, Indels: 45
0.74 0.08 0.18
Matches are distributed among these distances:
55 21 0.11
56 5 0.03
57 14 0.07
58 7 0.04
59 13 0.07
60 7 0.04
61 50 0.27
62 19 0.10
63 21 0.11
64 2 0.01
65 5 0.03
66 23 0.12
67 1 0.01
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (60 bp):
ATAATAATATATAATAAATAATACTATCATATATTAATAAATAATATAATATTAATAATT
Found at i:7797532 original size:83 final size:77
Alignment explanation
Indices: 7797297--7797606 Score: 226
Period size: 83 Copynumber: 3.8 Consensus size: 77
7797287 TATTATATTA
* * *
7797297 ATAAATAAATAATATTATATTACA-ATATATTAATAGATA-ATATTATATGAATAAATAATA-TA
1 ATAAATAAATAATATAATATTA-ATATA-ATAAATA-ATATATATTA-ATTAATAAATAATATTA
7797359 CTATTAATATAAT-ATAT
62 -TATTAATA-AATCATAT
*
7797376 -T-AATAAA-AATATCAATAATTATTATAATATACTCATAAATAATACTATTATATATTAATAAA
1 ATAAATAAATAATAT-AAT-ATTAATATAATA-A---AT-AAT-ATA-TA-T-TA-ATTAATAAA
*
7797438 TAATATAATATTAATAAAT-ATTATT
54 TAATATTATATTAATAAATCA-TA-T
7797463 ATAAATAAATATATACTAATCATTAATATTAATAAATAATATTATATTAATTAATAAATAATATT
1 ATAAATAAATA-ATA-TAAT-ATTAATA-TAATAAATAATA-TATATTAATTAATAAATAATATT
*
7797528 ATATTAATTAATCATAT
61 ATATTAATAAATCATAT
* * * *
7797545 ATTAATAAATAATATACTATTAATATAATATATCAATAAATATT-ATTAATAAA-AATATTATA
1 ATAAATAAATAATATAATATTAATATAATAAAT-AATATATATTAATTAATAAATAATATTATA
7797607 ATATATTAAT
Statistics
Matches: 193, Mismatches: 13, Indels: 53
0.75 0.05 0.20
Matches are distributed among these distances:
76 14 0.07
77 19 0.10
78 21 0.11
79 11 0.06
80 3 0.02
81 7 0.04
82 13 0.07
83 29 0.15
84 5 0.03
85 6 0.03
86 29 0.15
87 7 0.04
88 3 0.02
89 6 0.03
90 1 0.01
91 13 0.07
92 6 0.03
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.41
Consensus pattern (77 bp):
ATAAATAAATAATATAATATTAATATAATAAATAATATATATTAATTAATAAATAATATTATATT
AATAAATCATAT
Found at i:7797691 original size:15 final size:15
Alignment explanation
Indices: 7797671--7797742 Score: 50
Period size: 15 Copynumber: 5.3 Consensus size: 15
7797661 ATAGTAACAT
7797671 AATATTTTAATATTA
1 AATATTTTAATATTA
*
7797686 AATA-TTTATTATTA
1 AATATTTTAATATTA
*
7797700 AA-A---TATTATT-
1 AATATTTTAATATTA
*
7797710 -ATTTTTTAATATTA
1 AATATTTTAATATTA
* *
7797724 AAAATTTTAATAATA
1 AATATTTTAATATTA
7797739 AATA
1 AATA
7797743 CTTTCAATAC
Statistics
Matches: 44, Mismatches: 7, Indels: 12
0.70 0.11 0.19
Matches are distributed among these distances:
9 1 0.02
11 7 0.16
13 7 0.16
14 11 0.25
15 18 0.41
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
AATATTTTAATATTA
Found at i:7797698 original size:14 final size:14
Alignment explanation
Indices: 7797671--7797712 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
7797661 ATAGTAACAT
*
7797671 AATATTTTAATATTA
1 AATA-TTTATTATTA
7797686 AATATTTATTATTA
1 AATATTTATTATTA
7797700 AA-ATATTATTATT
1 AATAT-TTATTATT
7797713 TTTTAATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 2 0.08
14 19 0.76
15 4 0.16
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
AATATTTATTATTA
Found at i:7797774 original size:17 final size:15
Alignment explanation
Indices: 7797753--7797801 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 15
7797743 CTTTCAATAC
7797753 ATTTTAATAATTAAT
1 ATTTTAATAATTAAT
**
7797768 AATTTTTAATTTTTAAT
1 -A-TTTTAATAATTAAT
7797785 ATTTTAATAATT-AT
1 ATTTTAATAATTAAT
7797799 ATT
1 ATT
7797802 AATATTATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 5 0.18
15 9 0.32
16 2 0.07
17 12 0.43
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
ATTTTAATAATTAAT
Found at i:7797812 original size:32 final size:32
Alignment explanation
Indices: 7797753--7797816 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
7797743 CTTTCAATAC
*
7797753 ATTTTAATAATTAATAATTTTTAATTTTTAAT
1 ATTTTAATAATTAATAATTATTAATTTTTAAT
*
7797785 ATTTTAATAATTATATTAA-TATTATTTTTTAA
1 ATTTTAATAATTA-A-TAATTATTAATTTTTAA
7797817 AAAAAAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 13 0.46
33 12 0.43
34 3 0.11
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (32 bp):
ATTTTAATAATTAATAATTATTAATTTTTAAT
Found at i:7799031 original size:27 final size:28
Alignment explanation
Indices: 7798973--7799025 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 28
7798963 GTTTTAAAAG
* *
7798973 TAAAAATATAATTTTATAATTAAAATAA
1 TAAAAATATAATATTATAAATAAAATAA
7799001 TAAAAATAT-ATATTA-AAATAAAATA
1 TAAAAATATAATATTATAAATAAAATA
7799026 CTTAAATAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 9 0.39
27 5 0.22
28 9 0.39
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (28 bp):
TAAAAATATAATATTATAAATAAAATAA
Found at i:7801104 original size:249 final size:250
Alignment explanation
Indices: 7800638--7801121 Score: 763
Period size: 249 Copynumber: 1.9 Consensus size: 250
7800628 AAGAATTAAA
* ** * * * *
7800638 TTAAATTTAAATATTTTGATATTAAAATTGAGTGATTTGTGAATTATCAGGTTTTTGTATTTTAA
1 TTAAATTTAAATATTTTAATATTAAAATTGAGCAATTTATGAATTATCAAGTTTTTATAGTTTAA
*
7800703 ATATATATTTAATATATAAATAAGGATCATTATTTTTTATTTTTAAAAATATAAAATATAATATT
66 ATATATATTTAATATATAAATAAGGATCATTATTTTTAATTTTTAAAAATATAAAATATAATATT
7800768 TATTCTATAATTTATAGAATCCAATCAATTTTATAAAATTGAATTCAAACTATTCGAATAAATAA
131 TATTCTATAATTTATAGAATCCAATCAATTTTATAAAATTGAATTCAAACTATTCGAATAAATAA
** * *
7800833 TGAGCCTCACTCAAAAATGAAAATAAAATTCAATTAAATTTCCAATGTCAAGTTT
196 TGAGCAACACTCAAAAATGAAAATAAAATTAAATCAAATTTCCAATGTCAAGTTT
*
7800888 TTAAATTTAAATATTTTAATATT-AAATTGAGCAATTTATTAATTATCAAGTTTTTATAGTTTAA
1 TTAAATTTAAATATTTTAATATTAAAATTGAGCAATTTATGAATTATCAAGTTTTTATAGTTTAA
* * * *
7800952 ATATATTTTTCATATGTAAATAAGGATCATTATTTTTAATTTTTGAAAATATAAAATATAATATT
66 ATATATATTTAATATATAAATAAGGATCATTATTTTTAATTTTTAAAAATATAAAATATAATATT
* * *
7801017 TATTTTATAATTTGTAGAATCCAATCAATTTTATAAAATTGAATTCGAACTATTCGAATAAATAA
131 TATTCTATAATTTATAGAATCCAATCAATTTTATAAAATTGAATTCAAACTATTCGAATAAATAA
* *
7801082 TTAGCAACACTCAAATATGAAAATAAAATTAAATCAAATT
196 TGAGCAACACTCAAAAATGAAAATAAAATTAAATCAAATT
7801122 CAATTAAATT
Statistics
Matches: 212, Mismatches: 22, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
249 190 0.90
250 22 0.10
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.43
Consensus pattern (250 bp):
TTAAATTTAAATATTTTAATATTAAAATTGAGCAATTTATGAATTATCAAGTTTTTATAGTTTAA
ATATATATTTAATATATAAATAAGGATCATTATTTTTAATTTTTAAAAATATAAAATATAATATT
TATTCTATAATTTATAGAATCCAATCAATTTTATAAAATTGAATTCAAACTATTCGAATAAATAA
TGAGCAACACTCAAAAATGAAAATAAAATTAAATCAAATTTCCAATGTCAAGTTT
Found at i:7801187 original size:11 final size:11
Alignment explanation
Indices: 7801173--7801203 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
7801163 TGAAATTTAA
7801173 AAATATAAAAT
1 AAATATAAAAT
*
7801184 AAATAAAAAAT
1 AAATATAAAAT
7801195 AAATATAAA
1 AAATATAAA
7801204 CAAAAGAACC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (11 bp):
AAATATAAAAT
Found at i:7801192 original size:17 final size:17
Alignment explanation
Indices: 7801170--7801208 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
7801160 AGTTGAAATT
7801170 TAAAAATATAAA-ATAAA
1 TAAAAA-ATAAATATAAA
7801187 TAAAAAATAAATATAAA
1 TAAAAAATAAATATAAA
*
7801204 CAAAA
1 TAAAA
7801209 GAACCTTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.21
Consensus pattern (17 bp):
TAAAAAATAAATATAAA
Found at i:7801736 original size:34 final size:33
Alignment explanation
Indices: 7801693--7801801 Score: 105
Period size: 34 Copynumber: 3.2 Consensus size: 33
7801683 CTTTAAAGTT
7801693 TTTAAATATATAAATTCAAAAACTTTTAAAAAA
1 TTTAAATATATAAATTCAAAAACTTTTAAAAAA
* * *
7801726 TTTAGAATATATAAATTC-AAAAGTTTTTAAAAG
1 TTTA-AATATATAAATTCAAAAACTTTTAAAAAA
* * *
7801759 TTATCAAAGAT-TCAAATTCAAAAAATTTTTAAAATA
1 TT-T-AAATATAT-AAATTC-AAAAACTTTTAAAAAA
7801795 TTTAAAT
1 TTTAAAT
7801802 TTTAAAAGTT
Statistics
Matches: 61, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
33 19 0.31
34 27 0.44
35 2 0.03
36 13 0.21
ACGTcount: A:0.52, C:0.06, G:0.04, T:0.39
Consensus pattern (33 bp):
TTTAAATATATAAATTCAAAAACTTTTAAAAAA
Found at i:7819496 original size:48 final size:48
Alignment explanation
Indices: 7819425--7819524 Score: 173
Period size: 48 Copynumber: 2.1 Consensus size: 48
7819415 CCGTCTGTAG
*
7819425 TAGATCGAGAACACCTGTGAAGAGAGAACGTAGTTTCGAGCGTGATGA
1 TAGATCGAGAACACCTGTGAAGAGAGAACGAAGTTTCGAGCGTGATGA
* *
7819473 TAGATCGAGAACGCCTGTGAAGAGAGAACGAAGTTTCGATCGTGATGA
1 TAGATCGAGAACACCTGTGAAGAGAGAACGAAGTTTCGAGCGTGATGA
7819521 TAGA
1 TAGA
7819525 AGATCAAGGA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.34, C:0.14, G:0.31, T:0.21
Consensus pattern (48 bp):
TAGATCGAGAACACCTGTGAAGAGAGAACGAAGTTTCGAGCGTGATGA
Found at i:7822556 original size:44 final size:44
Alignment explanation
Indices: 7822506--7822593 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
7822496 CAAAGCAACA
7822506 AAACTAACTTGAACCAGTAGTCTATTCAAAGAAGGGATCAAATT
1 AAACTAACTTGAACCAGTAGTCTATTCAAAGAAGGGATCAAATT
* *
7822550 AAACTAATTTGAACCAGTAGTCTATTCAAAGGAGGGATCAAATT
1 AAACTAACTTGAACCAGTAGTCTATTCAAAGAAGGGATCAAATT
7822594 TACCTTGTAC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.26
Consensus pattern (44 bp):
AAACTAACTTGAACCAGTAGTCTATTCAAAGAAGGGATCAAATT
Found at i:7834524 original size:18 final size:18
Alignment explanation
Indices: 7834501--7834542 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
7834491 AGCTATTCAT
7834501 TTTGATTACTTAAATGCG
1 TTTGATTACTTAAATGCG
7834519 TTTGATTACTTAAATGCG
1 TTTGATTACTTAAATGCG
7834537 TTTGAT
1 TTTGAT
7834543 CTGAACAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.26, C:0.10, G:0.17, T:0.48
Consensus pattern (18 bp):
TTTGATTACTTAAATGCG
Found at i:7835563 original size:29 final size:30
Alignment explanation
Indices: 7835522--7835582 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 30
7835512 TAGAAAATAT
*
7835522 TAATATAAAAATAATTTTTAA-TATTTTAA
1 TAATATAAAAATAATTTTTAATTATCTTAA
* *
7835551 TAATATAATAATAGTTTTTAATTATCTTAA
1 TAATATAAAAATAATTTTTAATTATCTTAA
7835581 TA
1 TA
7835583 GCTTGATTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 19 0.68
30 9 0.32
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (30 bp):
TAATATAAAAATAATTTTTAATTATCTTAA
Found at i:7837168 original size:3 final size:3
Alignment explanation
Indices: 7837160--7837200 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
7837150 GCTATTACTT
7837160 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7837201 TATTTTCATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7839578 original size:2 final size:2
Alignment explanation
Indices: 7839573--7839597 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7839563 GTTTATTACA
7839573 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7839598 AATTGAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7848277 original size:20 final size:21
Alignment explanation
Indices: 7848241--7848292 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 21
7848231 ACCGAAATTA
7848241 ATAAAATATTATTTTTTAAAAT
1 ATAAAATATTA-TTTTTAAAAT
7848263 ATAAAATATTATTTTT-AAAT
1 ATAAAATATTATTTTTAAAAT
*
7848283 ATAAATTATT
1 ATAAAATATT
7848293 TAAAAATATC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 13 0.45
21 5 0.17
22 11 0.38
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATAAAATATTATTTTTAAAAT
Found at i:7848328 original size:31 final size:30
Alignment explanation
Indices: 7848259--7848328 Score: 70
Period size: 31 Copynumber: 2.3 Consensus size: 30
7848249 TTATTTTTTA
* *
7848259 AAATATAAAATATTATTTTTAAATATAAATT
1 AAATA-AAAATATCATTTATAAATATAAATT
**
7848290 ATTTAAAAATATCATTATATAAATATATAA-T
1 AAATAAAAATATCATT-TATAAATATA-AATT
7848321 AAATAAAA
1 AAATAAAA
7848329 TTAATTAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
30 10 0.32
31 19 0.61
32 2 0.06
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (30 bp):
AAATAAAAATATCATTTATAAATATAAATT
Found at i:7848331 original size:25 final size:25
Alignment explanation
Indices: 7848281--7848331 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
7848271 TTATTTTTAA
* **
7848281 ATATAAATTATTTAAAAATATCATT
1 ATATAAATTATATAAAAATAAAATT
7848306 ATATAAA-TATATAATAAATAAAATT
1 ATATAAATTATATAA-AAATAAAATT
7848331 A
1 A
7848332 ATTAAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 6 0.27
25 16 0.73
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (25 bp):
ATATAAATTATATAAAAATAAAATT
Found at i:7850571 original size:14 final size:12
Alignment explanation
Indices: 7850551--7850598 Score: 51
Period size: 14 Copynumber: 3.6 Consensus size: 12
7850541 TAAATATCAA
7850551 TTTTAATAAAATT
1 TTTTAATAAAA-T
7850564 TATTTAATATAAAT
1 T-TTTAATA-AAAT
7850578 TTTTAATAAATTAT
1 TTTTAATAAA--AT
7850592 TTTTAAT
1 TTTTAAT
7850599 TATAATTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
12 2 0.06
13 8 0.26
14 18 0.58
15 3 0.10
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
TTTTAATAAAAT
Found at i:7850588 original size:26 final size:27
Alignment explanation
Indices: 7850538--7850603 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
7850528 TATCAGTTAA
*
7850538 ATTTAAATATCAATTTTAATAAAATT-T
1 ATTT-AATATAAATTTTAATAAAATTAT
7850565 ATTTAATATAAATTTTTAAT-AAATTAT
1 ATTTAATATAAA-TTTTAATAAAATTAT
*
7850592 TTTTAATTATAA
1 ATTTAA-TATAA
7850604 TTATTGTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
26 12 0.35
27 17 0.50
28 5 0.15
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (27 bp):
ATTTAATATAAATTTTAATAAAATTAT
Found at i:7850607 original size:16 final size:14
Alignment explanation
Indices: 7850551--7850608 Score: 50
Period size: 14 Copynumber: 4.1 Consensus size: 14
7850541 TAAATATCAA
7850551 TTTTAATAAAATT-T
1 TTTTAAT-AAATTAT
*
7850565 ATTTAATATAA--AT
1 TTTTAATA-AATTAT
7850578 TTTTAATAAATTAT
1 TTTTAATAAATTAT
7850592 TTTTAATTATAATTAT
1 TTTTAA-TA-AATTAT
7850608 T
1 T
7850609 GTAATTTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
12 2 0.06
13 9 0.25
14 16 0.44
15 2 0.06
16 7 0.19
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTTAATAAATTAT
Found at i:7854909 original size:45 final size:46
Alignment explanation
Indices: 7854823--7854912 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 46
7854813 CTGTTCCCTT
* * *
7854823 TGCAGGCTCAGCTTTGAACAACAGGTATTCCCTGTTTGTCCTACTC
1 TGCAGGCTCAACTGTGAACAACAGGAATTCCCTGTTTGTCCTACTC
*
7854869 TGCAGGCTGAACTGTGAACAAC-GGAATTCCCTGTTTGTCCTACT
1 TGCAGGCTCAACTGTGAACAACAGGAATTCCCTGTTTGTCCTACT
7854913 ATGAAATCAT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 21 0.52
46 19 0.47
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (46 bp):
TGCAGGCTCAACTGTGAACAACAGGAATTCCCTGTTTGTCCTACTC
Found at i:7856223 original size:19 final size:19
Alignment explanation
Indices: 7856199--7856235 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7856189 TGCATAAAGG
* *
7856199 GAAAAAATAGAAAAGAAAA
1 GAAAAAAAAAAAAAGAAAA
7856218 GAAAAAAAAAAAAAGAAA
1 GAAAAAAAAAAAAAGAAA
7856236 CAGTCAGATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.03
Consensus pattern (19 bp):
GAAAAAAAAAAAAAGAAAA
Found at i:7859147 original size:17 final size:17
Alignment explanation
Indices: 7859125--7859157 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7859115 TGAATTAATT
7859125 TATATATAATTCATATG
1 TATATATAATTCATATG
*
7859142 TATATATAATTTATAT
1 TATATATAATTCATAT
7859158 ATATGTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (17 bp):
TATATATAATTCATATG
Found at i:7861223 original size:6 final size:6
Alignment explanation
Indices: 7861212--7861238 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
7861202 AACTATTGTA
7861212 TTTATT TTTATT TTTATT TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTT
7861239 CTGGTTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:7863755 original size:2 final size:2
Alignment explanation
Indices: 7863736--7863794 Score: 77
Period size: 2 Copynumber: 30.5 Consensus size: 2
7863726 ATTTTCCACA
*
7863736 CT CT TT CT CT -T C- CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* *
7863776 CT TT CT CT CT TT CT CT CT C
1 CT CT CT CT CT CT CT CT CT C
7863795 ACTCATGAAC
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
1 2 0.04
2 47 0.96
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (2 bp):
CT
Found at i:7870732 original size:25 final size:24
Alignment explanation
Indices: 7870683--7870732 Score: 57
Period size: 25 Copynumber: 2.0 Consensus size: 24
7870673 TAAAAAAATG
*
7870683 AGTTTAATTTTTATATTGACTTTA
1 AGTTTAATTTTTATATTGACATTA
*
7870707 AGTTTGATTATTTATATTTGA-ATTA
1 AGTTTAATT-TTTATA-TTGACATTA
7870732 A
1 A
7870733 AATATATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 8 0.36
25 10 0.45
26 4 0.18
ACGTcount: A:0.32, C:0.02, G:0.10, T:0.56
Consensus pattern (24 bp):
AGTTTAATTTTTATATTGACATTA
Found at i:7873735 original size:18 final size:18
Alignment explanation
Indices: 7873712--7873751 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
7873702 CTAACCAAAA
*
7873712 TATATATATTTTAATTTT
1 TATATATATTTTAAATTT
7873730 TATATATATTTTAAATTT
1 TATATATATTTTAAATTT
7873748 TATA
1 TATA
7873752 AAATAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TATATATATTTTAAATTT
Found at i:7879801 original size:72 final size:72
Alignment explanation
Indices: 7879682--7879897 Score: 405
Period size: 72 Copynumber: 3.0 Consensus size: 72
7879672 GTACAACATT
* *
7879682 TGAAAGGAAATTTACTTACAGGGCAGTTTCACTTTTTTATACTCAGATTATCTTCTGAATTAGCT
1 TGAAAGGAAATTTACTTACTGGGCAGTTTCACTTTTTTATACACAGATTATCTTCTGAATTAGCT
7879747 TCATAGA
66 TCATAGA
7879754 TGAAAGGAAATTTACTTACTGGGCAGTTTCACTTTTTTATACACAGATTATCTTCTGAATTAGCT
1 TGAAAGGAAATTTACTTACTGGGCAGTTTCACTTTTTTATACACAGATTATCTTCTGAATTAGCT
7879819 TCATAGA
66 TCATAGA
*
7879826 TGAAAGGAAATTTACTTACTGGGCAGTTTCACTTTTTTATACACAGATTAACTTCTGAATTAGCT
1 TGAAAGGAAATTTACTTACTGGGCAGTTTCACTTTTTTATACACAGATTATCTTCTGAATTAGCT
7879891 TCATAGA
66 TCATAGA
7879898 AAACCTGATG
Statistics
Matches: 141, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
72 141 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (72 bp):
TGAAAGGAAATTTACTTACTGGGCAGTTTCACTTTTTTATACACAGATTATCTTCTGAATTAGCT
TCATAGA
Found at i:7886583 original size:22 final size:22
Alignment explanation
Indices: 7886558--7886599 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
7886548 TTAATTTTTT
7886558 ATTTTATA-AAATAAAAATTATC
1 ATTTT-TACAAATAAAAATTATC
*
7886580 ATTTTTACAAATACAAATTA
1 ATTTTTACAAATAAAAATTA
7886600 AATTTCTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.40
Consensus pattern (22 bp):
ATTTTTACAAATAAAAATTATC
Found at i:7887378 original size:16 final size:16
Alignment explanation
Indices: 7887357--7887387 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7887347 TGAAAGGCAT
7887357 ATATAATACATATATG
1 ATATAATACATATATG
*
7887373 ATATAATATATATAT
1 ATATAATACATATAT
7887388 CACCAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (16 bp):
ATATAATACATATATG
Found at i:7887637 original size:20 final size:19
Alignment explanation
Indices: 7887599--7887636 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
7887589 TATCAAAATA
*
7887599 AAATTATTATATGTTTTTT
1 AAATTATTAAATGTTTTTT
7887618 AAATTGATTAAAT-TTTTTT
1 AAATT-ATTAAATGTTTTTT
7887637 TTTAATGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (19 bp):
AAATTATTAAATGTTTTTT
Found at i:7888037 original size:16 final size:17
Alignment explanation
Indices: 7888001--7888044 Score: 63
Period size: 16 Copynumber: 2.5 Consensus size: 17
7887991 TTATTTGAGA
7888001 TATTTTAATATTTGATAAT
1 TATTTTAA-ATTT-ATAAT
7888020 TATTTTAAATTT-TAAT
1 TATTTTAAATTTATAAT
7888036 TATTTTAAA
1 TATTTTAAA
7888045 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.52
18 4 0.16
19 8 0.32
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (17 bp):
TATTTTAAATTTATAAT
Found at i:7888740 original size:13 final size:13
Alignment explanation
Indices: 7888702--7888742 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
7888692 TAATTAATTA
7888702 TTTATATCAT-AT
1 TTTATATCATAAT
*
7888714 TTTATA-CGAAAAT
1 TTTATATC-ATAAT
7888727 TTTATATCATAAT
1 TTTATATCATAAT
7888740 TTT
1 TTT
7888743 TACTGATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
11 1 0.04
12 7 0.29
13 15 0.62
14 1 0.04
ACGTcount: A:0.37, C:0.07, G:0.02, T:0.54
Consensus pattern (13 bp):
TTTATATCATAAT
Found at i:7888848 original size:11 final size:11
Alignment explanation
Indices: 7888819--7888848 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
7888809 ATTTTAAATC
7888819 ATATTATTTTT
1 ATATTATTTTT
7888830 ATATTTATTTTT
1 ATA-TTATTTTT
7888842 ATATTAT
1 ATATTAT
7888849 ATCGCGTATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (11 bp):
ATATTATTTTT
Found at i:7900348 original size:16 final size:16
Alignment explanation
Indices: 7900329--7900360 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
7900319 CTATCATGTA
7900329 GAAATTCTTTAAAATT
1 GAAATTCTTTAAAATT
7900345 GAAATTCTTTAAAATT
1 GAAATTCTTTAAAATT
7900361 AACCTTTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (16 bp):
GAAATTCTTTAAAATT
Found at i:7907898 original size:322 final size:325
Alignment explanation
Indices: 7907308--7907933 Score: 826
Period size: 322 Copynumber: 1.9 Consensus size: 325
7907298 AATCAAATTT
7907308 GCATAAATCCTAAATCAAGATCAGAATTCCAAAATTAAAATAATTGATTTCTTCCACCAAGACTC
1 GCATAAATCCTAAATCAAGATCAGAATTCCAAAATTAAAATAATTGATTTCTTCCACCAAGACTC
* * *
7907373 TTCATTCATGATGCAATTTATTGTATTGAACATTAGAGATGAGAGACGAAGCAATGGAAAAAGAG
66 TTCATTCATGATGCAATTTATTGGATTGAACATTAGAAATGAGAGACGAAGCAA-GGAAAAAGAC
* * * *
7907438 AAATAAACAAAGAGAGAACGAGGGGAAATCAAGAGGAGAAACTGAGGAGAGGAGGATAGAGAATC
130 AAAGAAACAAAGAGAGAACGAGAGGAAA-CAAAAGGAGAAACTGAGGAGAGGACGATAGAGAATC
* * *
7907503 ACAAGCTTAAACAATATTCAGTTTATCATCAACCAAAGCTCCTAGGATTCGCAAAAAGAAGTATG
194 ACAAGCCTAAACAATATTCAATTTATCATCAACAAAAGCTCCTAGGATTCGCAAAAAGAAGTATG
*
7907568 TGTATGGAAACCTGTGAAACCCTACTCCTA-ATAATGGAGATTTCAAATGTAAAATAAAATGAAA
259 TATATGGAAACCTGTGAAACCCTACTCCTAGA-AATGGAGATTTCAAATGTAAAATAAAATGAAA
7907632 ACA
323 ACA
* * *
7907635 GCATAAATCTTAAATCAAGATCAGAATTCCAAGATTTAAAATAATTGATTTCTTCCTCCAAGACT
1 GCATAAATCCTAAATCAAGATCAGAATTCCAA-AATTAAAATAATTGATTTCTTCCACCAAGACT
* * * * *
7907700 CTTC-TTCATGATGCAATTTATTGGA-TG--GATTTGAAAATTAGGGA-GGAGC-AGAGAAATAA
65 CTTCATTCATGATGCAATTTATTGGATTGAACATTAG-AAATGAGAGACGAAGCAAG-GAAA-AA
* * *
7907759 -ACAAAGAAGA-TATG-GAGAAAGCA-AGGAAA-AAAAGGCAAGAAACTGAGGAGAGGACGATAG
127 GACAAAGAA-ACAAAGAGAGAACG-AGAGGAAACAAAAGG--AGAAACTGAGGAGAGGACGATAG
* * *
7907819 AGAATCACAAGCCTCAACAATATTCAATTTATTATCAACAAAAGCTCCTAGGATTTGCAAAAAGA
188 AGAATCACAAGCCTAAACAATATTCAATTTATCATCAACAAAAGCTCCTAGGATTCGCAAAAAGA
* *
7907884 AGTATGTATATGGAAATCTGTGAAACTCTACTCCTAGAAATGGAGATTTC
253 AGTATGTATATGGAAACCTGTGAAACCCTACTCCTAGAAATGGAGATTTC
7907934 CATTGTAACC
Statistics
Matches: 263, Mismatches: 27, Indels: 23
0.84 0.09 0.07
Matches are distributed among these distances:
320 5 0.02
322 138 0.52
323 15 0.06
324 11 0.04
325 7 0.03
326 2 0.01
327 51 0.19
328 34 0.13
ACGTcount: A:0.43, C:0.14, G:0.19, T:0.24
Consensus pattern (325 bp):
GCATAAATCCTAAATCAAGATCAGAATTCCAAAATTAAAATAATTGATTTCTTCCACCAAGACTC
TTCATTCATGATGCAATTTATTGGATTGAACATTAGAAATGAGAGACGAAGCAAGGAAAAAGACA
AAGAAACAAAGAGAGAACGAGAGGAAACAAAAGGAGAAACTGAGGAGAGGACGATAGAGAATCAC
AAGCCTAAACAATATTCAATTTATCATCAACAAAAGCTCCTAGGATTCGCAAAAAGAAGTATGTA
TATGGAAACCTGTGAAACCCTACTCCTAGAAATGGAGATTTCAAATGTAAAATAAAATGAAAACA
Found at i:7922241 original size:21 final size:21
Alignment explanation
Indices: 7922203--7922242 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7922193 TTGTAGATAA
*
7922203 TTTAAAATTATATTAAAGACT
1 TTTAAAATAATATTAAAGACT
7922224 TTTAAAA-AATATTGAAAGA
1 TTTAAAATAATATT-AAAGA
7922243 AAATGTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.53, C:0.03, G:0.07, T:0.38
Consensus pattern (21 bp):
TTTAAAATAATATTAAAGACT
Found at i:7937247 original size:791 final size:790
Alignment explanation
Indices: 7934969--7938122 Score: 5794
Period size: 791 Copynumber: 4.0 Consensus size: 790
7934959 AACTTGTTCG
* * * * *
7934969 TATAATCGTATCTAATATATATAAGATTTAAATTTTAATACTTATAATCTTAATTTTATTCAACA
1 TATAATCGTATCTAACATATATAAGATTTAAATTTCAACACTTATAATCTTAATCTCATTCAACA
* * * *
7935034 CGAATGAAATTCAAATCTTACACTATAATACTTTTTTTCTTTTATTTTGTAAATTTATGATCGCT
66 CGAATGAAATTCAAATCCTATACTATAATACTTTTTTTCTTTTATTTTGTAAATTTACGATCACT
* ***
7935099 AGTGGCTTCCATTCAGGATGATCCTTGCAGCAGTTAATTTGCTTTGCTCGGACATGGCCAGCAAA
131 AATGGCTTCTGCTCAGGATGATCCTTGCAGCAG-TAATTTGCTTTGCTCGGACATGGCCAGCAAA
* **
7935164 CAAGTTTCAGTACTTCTCCAACAAAAACAGAAGAGTCAAAGACCAGTATCCCTCCAGTGATGCTA
195 CAAGTTTCAGTACTTCTCCAACCAAAACAGAAGAGTCAAAGACCAGTATCCCTCCACAGATGCTA
* *
7935229 TCCTTTCTTTCTTCTTCTGGCTGCCCCCAGACTTATTTGCTGACCAGAAGGAAACCTCCATATCC
260 TCCTTTCTTTCTTCTTCTGGTTGCCACCAGACTTATTTGCTGACCAGAAGGAAACCTCCATATCC
7935294 ATACGCCAAGCTGGCAGATTTCTCTCTTTTAGAATCTCTCTATACTTTCTCTTGCTACGGTCTTG
325 ATACGCCAAGCTGGCAGATTTCTCTCTTTTAGAATCTCTCTATACTTTCTCTTGCTACGGTCTTG
7935359 GTATTTACTAACTCAAGCATTGGTTTCCCTAACAGCCTGTGTCTTGCAGGTATTCAGCTAAGAAG
390 GTATTTACTAACTCAAGCATTGGTTTCCCTAACAGCCTGTGTCTTGCAGGTATTCAGCTAAGAAG
*
7935424 GAATGTTGATTTCAGAGCCAGATTTTAGCATCAACAATTACAGATAATGGCAATTACATTTTGGC
455 GAATGTTGATTTCACAGCCAGATTTTAGCATCAACAATTACAGATAATGGCAATTACATTTTGGC
7935489 CTTAATGTTTC-A-AAGAACACTGCGAATTTGCACTTTGCTAGTGATTCCATCTTGAGGATTGCA
520 CTTAATGTTTCAAGAAG-ACACTGCGAATTTGCACTTTGCTAGTGATTCCATCTTGAGGATTGCA
7935552 GGGGTGGATGAGTATGGGATGGTTCTTGATATTGCTACTACTGTGATTGTTGCTGCTGTGCTACC
584 GGGGTGGATGAGTATGGGATGGTTCTTGATATTGCTACTACTGTGATTGTTGCTGCTGTGCTACC
* * *
7935617 CTCACCATCGAGAAGAAGGCAGACCTTTGGTAATCAGGAGTTGATGGGCATTAGTAAAAGATCCT
649 CTCAACATCAAGAAGAAGGCAGACCTTTGGTAATCAGGAGTTGATGGGTATTAGTAAAAGATCCT
* *
7935682 TTCATGTATAGACTATAGAAGAACTTCGATTTCTGAAAAATCCGAGTGAGGTTGGTCATTGCTGT
714 TTCATGTATAGACTATAGAAGAACTTTGATTTCTGAAAAATCCGAATGAGGTTGGTCATTGCTGT
*
7935747 AACAGGTGTTCA
779 AACAGGTGTTTA
*
7935759 TATAATCGTATCTAACATGTATAAGATTTAAATTTCAACACTTATAATCTTAATCTCATTCAACA
1 TATAATCGTATCTAACATATATAAGATTTAAATTTCAACACTTATAATCTTAATCTCATTCAACA
** *
7935824 CGAATGAAATTCAAATCCTATACTATAATACTTTTTTTCTGCTATTTTGTAAATTTATGATCACT
66 CGAATGAAATTCAAATCCTATACTATAATACTTTTTTTCTTTTATTTTGTAAATTTACGATCACT
*
7935889 AGTGGCTTCTGCTCAGGATGATCCTTGCAGCAGTAATTTGCTTTGCTCGGACATGGCCAGCAAAC
131 AATGGCTTCTGCTCAGGATGATCCTTGCAGCAGTAATTTGCTTTGCTCGGACATGGCCAGCAAAC
7935954 AAGTTTCAGTACTTCTCCAACCAAAACAGAAGAGTCAAAGACCAGTATCCCTCCACAGATGCTAT
196 AAGTTTCAGTACTTCTCCAACCAAAACAGAAGAGTCAAAGACCAGTATCCCTCCACAGATGCTAT
7936019 CCTTTCTTTCTTCTTCTGGTTGCCACCAGACTTATTTGCTGACCAGAAGGAAACCTCCATATCCA
261 CCTTTCTTTCTTCTTCTGGTTGCCACCAGACTTATTTGCTGACCAGAAGGAAACCTCCATATCCA
* *
7936084 TACGCCAAGCTGGCAGATTTCTCCCTTTTAGAATCTCTCTATACTTTCTCTTGCTACGGTCTTGT
326 TACGCCAAGCTGGCAGATTTCTCTCTTTTAGAATCTCTCTATACTTTCTCTTGCTACGGTCTTGG
7936149 TATTTACTAACTCAAGCATTGGTTTCCCTAACAGCC--TGTCTTGCAGGTATTCAGCTAAGAAGG
391 TATTTACTAACTCAAGCATTGGTTTCCCTAACAGCCTGTGTCTTGCAGGTATTCAGCTAAGAAGG
*
7936212 AATGTTGATTTCAGAGCCAGATTTTAGCATCAACAATTACAGATAATGGCAATTACATTTTGGCC
456 AATGTTGATTTCACAGCCAGATTTTAGCATCAACAATTACAGATAATGGCAATTACATTTTGGCC
7936277 TTAATGTTTCAAGAAGACACTGCGAATTTGCACTTTGCTAGTGATTCCATCTTGAGGATTGCAGG
521 TTAATGTTTCAAGAAGACACTGCGAATTTGCACTTTGCTAGTGATTCCATCTTGAGGATTGCAGG
* * *
7936342 GGAGGTTGAGTATGGGATGGTTCTTGATATAGCTACTACTGTGATTGTTGCTGCTGTGCTACCCT
586 GGTGGATGAGTATGGGATGGTTCTTGATATTGCTACTACTGTGATTGTTGCTGCTGTGCTACCCT
*
7936407 CACCATCAAGAAGAAGGCAGACCTTTGGTAATCAGGAGTTGATGGGTATTAGTAAAAGATCCTTT
651 CAACATCAAGAAGAAGGCAGACCTTTGGTAATCAGGAGTTGATGGGTATTAGTAAAAGATCCTTT
7936472 CATGTATAGACTATAGAAGAACTTTGATTTCTGAAAAATCCGAATGAGGTTGGTCATTGCTGTAA
716 CATGTATAGACTATAGAAGAACTTTGATTTCTGAAAAATCCGAATGAGGTTGGTCATTGCTGTAA
7936537 CAGGTGTTTA
781 CAGGTGTTTA
7936547 TATAATCGTATCTAACATATATAAGATTTAAATTTCAACACTTATAATCTTAATCTCATTCAACA
1 TATAATCGTATCTAACATATATAAGATTTAAATTTCAACACTTATAATCTTAATCTCATTCAACA
7936612 CGAATGAAATTCAAATCCTATACTATAATACTTTTTTTCTTTTATTTTGTAAATTTACGATCACT
66 CGAATGAAATTCAAATCCTATACTATAATACTTTTTTTCTTTTATTTTGTAAATTTACGATCACT
7936677 AATGGCTTCTGCTCAGGATGATCCTTGCAGCAGTTAATTTGCTTTGCTCGGACATGGCCAGCAAA
131 AATGGCTTCTGCTCAGGATGATCCTTGCAGCAG-TAATTTGCTTTGCTCGGACATGGCCAGCAAA
7936742 CAAGTTTCAGTACTTCTCCAACCAAAACAGAAGAGTCAAAGACCAGTATCCCTCCACAGATGCTA
195 CAAGTTTCAGTACTTCTCCAACCAAAACAGAAGAGTCAAAGACCAGTATCCCTCCACAGATGCTA
7936807 TCCTTTCTTTCTTCTTCTGGTTGCCACCAGACTTATTTGCTGACCAGAAGGAAACCTCCATATCC
260 TCCTTTCTTTCTTCTTCTGGTTGCCACCAGACTTATTTGCTGACCAGAAGGAAACCTCCATATCC
7936872 ATACGCCAAGCTGGCAGATTTCTCTCTTTTAGAATCTCTCTATACTTTCTCTTGCTACGGTCTTG
325 ATACGCCAAGCTGGCAGATTTCTCTCTTTTAGAATCTCTCTATACTTTCTCTTGCTACGGTCTTG
*
7936937 TTATTTACTAACTCAAGCATTGGTTTCCCTAACAGCCTGTGTCTTGCAGGTATTCAGCTAAGAAG
390 GTATTTACTAACTCAAGCATTGGTTTCCCTAACAGCCTGTGTCTTGCAGGTATTCAGCTAAGAAG
7937002 GAATGTTGATTTCACAGCCAGATTTTAGCATCAACAATTACAGATAATGGCAATTACATTTTGGC
455 GAATGTTGATTTCACAGCCAGATTTTAGCATCAACAATTACAGATAATGGCAATTACATTTTGGC
7937067 CTTAATGTTTCAAGAAGACACTGCGAATTTGCACTTTGCTAGTGATTCCATCTTGAGGATTGCAG
520 CTTAATGTTTCAAGAAGACACTGCGAATTTGCACTTTGCTAGTGATTCCATCTTGAGGATTGCAG
7937132 GGGTGGATGAGTATGGGATGGTTCTTGATATTGCTACTACTGTGATTGTTGCTGCTGTGCTACCC
585 GGGTGGATGAGTATGGGATGGTTCTTGATATTGCTACTACTGTGATTGTTGCTGCTGTGCTACCC
7937197 TCAACATCAAGAAGAAGGCAGACCTTTGGTAATCAGGAGTTGATGGGTATTAGTAAAAGATCCTT
650 TCAACATCAAGAAGAAGGCAGACCTTTGGTAATCAGGAGTTGATGGGTATTAGTAAAAGATCCTT
7937262 TCATGTATAGACTATAGAAGAACTTTGATTTCTGAAAAATCCGAATGAGGTTGGTCATTGCTGTA
715 TCATGTATAGACTATAGAAGAACTTTGATTTCTGAAAAATCCGAATGAGGTTGGTCATTGCTGTA
7937327 ACAGGTGTTTA
780 ACAGGTGTTTA
7937338 TATAATCGTATCTAACATATATAAGATTTAAATTTCAACACTTATAATCTTAATCTCATTCAACA
1 TATAATCGTATCTAACATATATAAGATTTAAATTTCAACACTTATAATCTTAATCTCATTCAACA
*
7937403 CGAATGAAATTCAAATCCTATACTATAATACTTTTTTTCTTTTATTTTGTAAATTTACTATCACT
66 CGAATGAAATTCAAATCCTATACTATAATACTTTTTTTCTTTTATTTTGTAAATTTACGATCACT
7937468 AATGGCTTCTGCTCAGGATGATCCTTGCAGCAGTAATTTGCTTTGCTCGGACATGGCCAGCAAAC
131 AATGGCTTCTGCTCAGGATGATCCTTGCAGCAGTAATTTGCTTTGCTCGGACATGGCCAGCAAAC
* *
7937533 AAGTTTCAGTACTTCTTCAACCAAAACAGAAGAGTCAAAGACCAGTATCCCTCCAGAGATGCTAT
196 AAGTTTCAGTACTTCTCCAACCAAAACAGAAGAGTCAAAGACCAGTATCCCTCCACAGATGCTAT
7937598 CCTTTCTTTCTTCTTCTGGTTGCCACCAGACTTATTTGCTGACCAGAAGGAAACCTCCATATCCA
261 CCTTTCTTTCTTCTTCTGGTTGCCACCAGACTTATTTGCTGACCAGAAGGAAACCTCCATATCCA
7937663 TACGCCAAGCTGGCAGATTTCTCTCTTTTAGAATCTCTCTATACTTTCTCTTGCTACGGTCTTGG
326 TACGCCAAGCTGGCAGATTTCTCTCTTTTAGAATCTCTCTATACTTTCTCTTGCTACGGTCTTGG
* *
7937728 TATTTACTAACTCAAGCATTGGTTTCCCTAACAGCCTGTGTCTTGCGGGTATTCAGCTAAGAAAG
391 TATTTACTAACTCAAGCATTGGTTTCCCTAACAGCCTGTGTCTTGCAGGTATTCAGCTAAGAAGG
* *
7937793 AATGTTGACTTCACAGCCATATTTTAGCATCAACAATTACAGATAATGGCAATTACATTTTGGCC
456 AATGTTGATTTCACAGCCAGATTTTAGCATCAACAATTACAGATAATGGCAATTACATTTTGGCC
*
7937858 TTAATGTTTCAAGAAAACACTGCGAATTTGCACTTTGCTAAGTGATTCCATCTTGAGGATTGCAG
521 TTAATGTTTCAAGAAGACACTGCGAATTTGCACTTTGCT-AGTGATTCCATCTTGAGGATTGCAG
**
7937923 GGGTGCTTGAGTATGGGATGGTTCTTGATATTGCTACTACTGTGATTGTTGCTGCTGTGCTACCC
585 GGGTGGATGAGTATGGGATGGTTCTTGATATTGCTACTACTGTGATTGTTGCTGCTGTGCTACCC
7937988 TCAACATCAAGAAGAAGGCAGACCTTTGGTAATCAGGAGTTGATGGGTATTAGTAAAAGATCCTT
650 TCAACATCAAGAAGAAGGCAGACCTTTGGTAATCAGGAGTTGATGGGTATTAGTAAAAGATCCTT
* *
7938053 TCATGTATAGACTATAGAAGAACTTTGATTTCTGAAAAATCTGAGTGAGGTTGGTCATTGCTGTA
715 TCATGTATAGACTATAGAAGAACTTTGATTTCTGAAAAATCCGAATGAGGTTGGTCATTGCTGTA
7938118 ACAGG
780 ACAGG
7938123 GGGAGGGATT
Statistics
Matches: 2305, Mismatches: 53, Indels: 11
0.97 0.02 0.00
Matches are distributed among these distances:
787 102 0.04
788 405 0.18
789 521 0.23
790 537 0.23
791 740 0.32
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (790 bp):
TATAATCGTATCTAACATATATAAGATTTAAATTTCAACACTTATAATCTTAATCTCATTCAACA
CGAATGAAATTCAAATCCTATACTATAATACTTTTTTTCTTTTATTTTGTAAATTTACGATCACT
AATGGCTTCTGCTCAGGATGATCCTTGCAGCAGTAATTTGCTTTGCTCGGACATGGCCAGCAAAC
AAGTTTCAGTACTTCTCCAACCAAAACAGAAGAGTCAAAGACCAGTATCCCTCCACAGATGCTAT
CCTTTCTTTCTTCTTCTGGTTGCCACCAGACTTATTTGCTGACCAGAAGGAAACCTCCATATCCA
TACGCCAAGCTGGCAGATTTCTCTCTTTTAGAATCTCTCTATACTTTCTCTTGCTACGGTCTTGG
TATTTACTAACTCAAGCATTGGTTTCCCTAACAGCCTGTGTCTTGCAGGTATTCAGCTAAGAAGG
AATGTTGATTTCACAGCCAGATTTTAGCATCAACAATTACAGATAATGGCAATTACATTTTGGCC
TTAATGTTTCAAGAAGACACTGCGAATTTGCACTTTGCTAGTGATTCCATCTTGAGGATTGCAGG
GGTGGATGAGTATGGGATGGTTCTTGATATTGCTACTACTGTGATTGTTGCTGCTGTGCTACCCT
CAACATCAAGAAGAAGGCAGACCTTTGGTAATCAGGAGTTGATGGGTATTAGTAAAAGATCCTTT
CATGTATAGACTATAGAAGAACTTTGATTTCTGAAAAATCCGAATGAGGTTGGTCATTGCTGTAA
CAGGTGTTTA
Found at i:7950557 original size:2 final size:2
Alignment explanation
Indices: 7950550--7950574 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7950540 TCAAACATTT
7950550 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
7950575 TTTTTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7954672 original size:2 final size:2
Alignment explanation
Indices: 7954665--7954709 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
7954655 AGATAAAGGG
*
7954665 GA GA GA GA CA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
7954707 GA G
1 GA G
7954710 TGTACAATGA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.02, G:0.49, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7958354 original size:20 final size:19
Alignment explanation
Indices: 7958312--7958389 Score: 77
Period size: 18 Copynumber: 4.0 Consensus size: 19
7958302 TATATATAAA
* *
7958312 AAATTTATTTTTTAATTAATT
1 AAATTTATATTTT-A-TATTT
7958333 AAATTTATATTTATATATTT
1 AAATTTATATTT-TATATTT
*
7958353 AATTTTATA-TTTATATTT
1 AAATTTATATTTTATATTT
* *
7958371 AAAATAATATTTTATATTT
1 AAATTTATATTTTATATTT
7958390 TAAAAATAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
18 13 0.27
19 11 0.22
20 12 0.24
21 12 0.24
22 1 0.02
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
AAATTTATATTTTATATTT
Found at i:7958388 original size:25 final size:21
Alignment explanation
Indices: 7958362--7958406 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
7958352 TAATTTTATA
7958362 TTTATA-TTT-AAAATAATAT
1 TTTATATTTTAAAAATAATAT
7958381 TTTATATTTTAAAAATAATAT
1 TTTATATTTTAAAAATAATAT
7958402 TTTAT
1 TTTAT
7958407 TAATTTCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 6 0.25
20 3 0.12
21 15 0.62
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TTTATATTTTAAAAATAATAT
Found at i:7958397 original size:21 final size:19
Alignment explanation
Indices: 7958339--7958406 Score: 75
Period size: 21 Copynumber: 3.5 Consensus size: 19
7958329 AATTAAATTT
** *
7958339 ATATTTATATATTTAATTTT
1 ATATTT-TATATTTAAAATA
7958359 ATA-TTTATATTTAAAATA
1 ATATTTTATATTTAAAATA
7958377 ATATTTTATATTTTAAAAATA
1 ATATTTTATA-TTT-AAAATA
7958398 ATATTTTAT
1 ATATTTTAT
7958407 TAATTTCAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
18 13 0.31
19 8 0.19
20 6 0.14
21 15 0.36
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
ATATTTTATATTTAAAATA
Found at i:7958417 original size:21 final size:20
Alignment explanation
Indices: 7958362--7958417 Score: 69
Period size: 21 Copynumber: 2.8 Consensus size: 20
7958352 TAATTTTATA
7958362 TTTAT-ATTTAAAATAATAT
1 TTTATAATTTAAAATAATAT
*
7958381 TTTATATTTTAAAAATAATAT
1 TTTATAATTT-AAAATAATAT
*
7958402 TTTATTAATTTCAAAT
1 TTTA-TAATTTAAAAT
7958418 TAAATCGGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
19 5 0.16
20 3 0.10
21 18 0.58
22 5 0.16
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (20 bp):
TTTATAATTTAAAATAATAT
Found at i:7959649 original size:3 final size:3
Alignment explanation
Indices: 7959635--7959671 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
7959625 TTTTAATGAT
* *
7959635 TTA TTG TTA TTA TTA TTA TTG TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7959672 GAAATATAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7959655 original size:15 final size:15
Alignment explanation
Indices: 7959635--7959669 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
7959625 TTTTAATGAT
7959635 TTATTGTTATTATTA
1 TTATTGTTATTATTA
7959650 TTATTGTTATTATTA
1 TTATTGTTATTATTA
7959665 TTATT
1 TTATT
7959670 ATGAAATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.69
Consensus pattern (15 bp):
TTATTGTTATTATTA
Found at i:7962606 original size:22 final size:22
Alignment explanation
Indices: 7962578--7962623 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
7962568 TTATATTCTC
7962578 TTCAGCTGAAAATGATACATGG
1 TTCAGCTGAAAATGATACATGG
7962600 TTCAGCTGAAAATGATACATGG
1 TTCAGCTGAAAATGATACATGG
7962622 TT
1 TT
7962624 TCACGAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (22 bp):
TTCAGCTGAAAATGATACATGG
Found at i:7964578 original size:22 final size:24
Alignment explanation
Indices: 7964553--7964600 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
7964543 ATAATGATGC
*
7964553 TTTTTTAACG-AGC-TTATGAGCA
1 TTTTTTAACGAAACTTTATGAGCA
*
7964575 TTTTTTAAGGAAACTTTATGAGCA
1 TTTTTTAACGAAACTTTATGAGCA
7964599 TT
1 TT
7964601 GAGTAATGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 9 0.41
23 2 0.09
24 11 0.50
ACGTcount: A:0.29, C:0.10, G:0.17, T:0.44
Consensus pattern (24 bp):
TTTTTTAACGAAACTTTATGAGCA
Found at i:7968723 original size:15 final size:16
Alignment explanation
Indices: 7968703--7968739 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7968693 GTGGCCTGGA
7968703 ACATATGGTTC-T-ATG
1 ACATAT-GTTCTTCATG
7968718 ACATATGTTCTTCATG
1 ACATATGTTCTTCATG
7968734 ACATAT
1 ACATAT
7968740 TAAAATTCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 4 0.20
15 7 0.35
16 9 0.45
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.41
Consensus pattern (16 bp):
ACATATGTTCTTCATG
Found at i:7969783 original size:2 final size:2
Alignment explanation
Indices: 7969742--7969767 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7969732 AGGCTCTTAA
7969742 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
7969768 ATTACTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:7974987 original size:30 final size:30
Alignment explanation
Indices: 7974970--7975028 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
7974960 ATCCAATTGA
*
7974970 ACCCTTAAATATTTATTTTCACCTAATTAC
1 ACCCTTAAACATTTATTTTCACCTAATTAC
*
7975000 ACCCTTAAACATCTATTTTCACCTTAATT
1 ACCCTTAAACATTTATTTTCACC-TAATT
7975029 GAACTTTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.32, C:0.25, G:0.00, T:0.42
Consensus pattern (30 bp):
ACCCTTAAACATTTATTTTCACCTAATTAC
Found at i:7976543 original size:31 final size:34
Alignment explanation
Indices: 7976508--7976577 Score: 83
Period size: 36 Copynumber: 2.1 Consensus size: 34
7976498 AAGTGGTTAG
7976508 TCTCAAATAAAGCT-T-AA-TACAAAATTAATCA
1 TCTCAAATAAAGCTATAAATTACAAAATTAATCA
* *
7976539 TCTCATATTAAGCTAATAAATTTACAAAATTAATCA
1 TCTCAAATAAAGCT-ATAAA-TTACAAAATTAATCA
7976575 TCT
1 TCT
7976578 ATGTCCCTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
31 12 0.38
33 1 0.03
34 2 0.06
36 17 0.53
ACGTcount: A:0.47, C:0.16, G:0.03, T:0.34
Consensus pattern (34 bp):
TCTCAAATAAAGCTATAAATTACAAAATTAATCA
Found at i:7976981 original size:13 final size:13
Alignment explanation
Indices: 7976963--7976988 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7976953 AGAAAACACA
7976963 TCTTTTTTTTTAT
1 TCTTTTTTTTTAT
7976976 TCTTTTTTTTTAT
1 TCTTTTTTTTTAT
7976989 ATATAAAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (13 bp):
TCTTTTTTTTTAT
Found at i:7982617 original size:29 final size:30
Alignment explanation
Indices: 7982580--7982645 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 30
7982570 TGAATTTTAA
* *
7982580 AAATAAAACTCCTATGTTTTTATTG-TATCC
1 AAAT-AAACTCCTATCTTTTAATTGATATCC
** *
7982610 AAATAAACTTTTATCTTTTAATTGATATCT
1 AAATAAACTCCTATCTTTTAATTGATATCC
7982640 AAATAA
1 AAATAA
7982646 GTTTTTACTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 16 0.53
30 14 0.47
ACGTcount: A:0.39, C:0.12, G:0.05, T:0.44
Consensus pattern (30 bp):
AAATAAACTCCTATCTTTTAATTGATATCC
Found at i:7982652 original size:30 final size:28
Alignment explanation
Indices: 7982596--7982656 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 28
7982586 AACTCCTATG
*
7982596 TTTTTATTGTATCCAAATAAACTTTTATC
1 TTTTAATTGTATCCAAATAAACTTTTA-C
* **
7982625 TTTTAATTGATATCTAAATAAGTTTTTAC
1 TTTTAATTG-TATCCAAATAAACTTTTAC
7982654 TTT
1 TTT
7982657 AAATGAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 12 0.44
30 15 0.56
ACGTcount: A:0.31, C:0.10, G:0.05, T:0.54
Consensus pattern (28 bp):
TTTTAATTGTATCCAAATAAACTTTTAC
Found at i:7994770 original size:58 final size:57
Alignment explanation
Indices: 7994636--7994804 Score: 212
Period size: 60 Copynumber: 2.9 Consensus size: 57
7994626 TGTTTTTGTA
* * * *
7994636 CAAGAAAAATTGATACTTTCAACTTTTCCTAAAAAAAACCCATTTTTAGAAAATTATTTT
1 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATA---TTTTTTAGAAAATTATTTT
* * *
7994696 CAAAGAAAATTGATACTTTCAACTTTTCTTCGAAAATATTTTTTAGAAAACTTATTTT
1 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAA-TTATTTT
*
7994754 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAAATATTTTTTTGAAA
1 CAAGGAAAATTGATACTTTCAACTTTTCCTC--AAAAATATTTTTTAGAAA
7994805 TTTTATTTAA
Statistics
Matches: 95, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
57 11 0.12
58 36 0.38
60 48 0.51
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.39
Consensus pattern (57 bp):
CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAATTATTTT
Found at i:7995711 original size:24 final size:24
Alignment explanation
Indices: 7995683--7995840 Score: 102
Period size: 24 Copynumber: 6.7 Consensus size: 24
7995673 AATAGATAAA
7995683 TAATAAATAAATAAATATATATAC
1 TAATAAATAAATAAATATATATAC
* * *
7995707 TAATAGATAAAT-AATAGATAATAGT
1 TAATAAATAAATAAATATAT-ATA-C
*
7995732 TAAT-AAT-AA-AAATTTATATAC
1 TAATAAATAAATAAATATATATAC
* *
7995753 ATTAATAGATAAAT-AATAATATATAT
1 --TAATAAATAAATAAAT-ATATATAC
* *
7995779 TAATAGATAAATATATATATATATAT
1 TAATAAATAAATA-A-ATATATATAC
*
7995805 TAATAAAT-AAT-AATA-ATA-GC
1 TAATAAATAAATAAATATATATAC
7995825 -AATAAATAAATAAATA
1 TAATAAATAAATAAATA
7995841 AGATACAAAA
Statistics
Matches: 107, Mismatches: 13, Indels: 31
0.71 0.09 0.21
Matches are distributed among these distances:
19 7 0.07
20 3 0.03
21 7 0.07
22 6 0.06
23 18 0.17
24 30 0.28
25 12 0.11
26 22 0.21
27 2 0.02
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (24 bp):
TAATAAATAAATAAATATATATAC
Found at i:7995818 original size:10 final size:10
Alignment explanation
Indices: 7995673--7995841 Score: 71
Period size: 10 Copynumber: 16.2 Consensus size: 10
7995663 TAGCAAAAAA
7995673 AATAGATAAAT
1 AATA-ATAAAT
7995684 AATAAATAAAT
1 AAT-AATAAAT
*
7995695 AA-ATATATAT
1 AATA-ATAAAT
* *
7995705 ACTAATAGAT
1 AATAATAAAT
*
7995715 AAATAATAGAT
1 -AATAATAAAT
* *
7995726 AATAGTTAAT
1 AATAATAAAT
7995736 AATAA-AAAT
1 AATAATAAAT
* *
7995745 -TTATATACATT
1 AATA-ATA-AAT
7995756 AATAGATAAAT
1 AATA-ATAAAT
7995767 AATAATATATATT
1 AATAATA-A-A-T
7995780 AATAGATAAAT
1 AATA-ATAAAT
*
7995791 ATATATATATAT
1 A-ATA-ATAAAT
*
7995803 ATTAATAAAT
1 AATAATAAAT
7995813 AATAAT-AAT
1 AATAATAAAT
**
7995822 AGCAATAAAT
1 AATAATAAAT
7995832 -A-AATAAAT
1 AATAATAAAT
7995840 AA
1 AA
7995842 GATACAAAAT
Statistics
Matches: 121, Mismatches: 22, Indels: 32
0.69 0.13 0.18
Matches are distributed among these distances:
8 9 0.07
9 13 0.11
10 39 0.32
11 34 0.28
12 17 0.14
13 6 0.05
14 3 0.02
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (10 bp):
AATAATAAAT
Found at i:7996214 original size:42 final size:41
Alignment explanation
Indices: 7996030--7996437 Score: 343
Period size: 42 Copynumber: 9.5 Consensus size: 41
7996020 AAATTTTGAT
** * *
7996030 CAAAGCTCCTCTAAGTAAAGGCTCAACGACTTTGAAAAAAATAAA
1 CAAAGCTCCTCTAAACAGAGGCTCAATGAC-TT---AAAAATAAA
* * *
7996075 TAAAGCTCCTCTAAATAGAGGCTCCATGACCTTAAAAAT-AA
1 CAAAGCTCCTCTAAACAGAGGCTCAATGA-CTTAAAAATAAA
** * * * *
7996116 -ATGGCTCATCCAATCAGAAGCTCAATGACTTTTGAAAAATAAA
1 CAAAGCTCCTCTAAACAGAGGCTCAATGAC--TT-AAAAATAAA
* * *
7996159 CCAAGCTCCTCTAAATAGAGGCTCAATGACTTAAACAATTAA
1 CAAAGCTCCTCTAAACAGAGGCTCAATGACTTAAA-AATAAA
* *
7996201 CAAAGCTCCTCTAAACAGAGTCTTAATGACTTAAATAATAAA
1 CAAAGCTCCTCTAAACAGAGGCTCAATGACTTAAA-AATAAA
**
7996243 CAAAGCTCCTCTAAACAGAGGCTTGATGACTTTTAAAAAATAAA
1 CAAAGCTCCTCTAAACAGAGGCTCAATGAC--TT-AAAAATAAA
** * * *
7996287 CAAAGCTTTTCTAAATAAAGGCTCAACGACTTAAATAATAAA
1 CAAAGCTCCTCTAAACAGAGGCTCAATGACTTAAA-AATAAA
** * *
7996329 CAAAGCTATTCTAAACAGAGGCTCAACGATTTTTGAAAAATAAA
1 CAAAGCTCCTCTAAACAGAGGCTCAATGA--CTT-AAAAATAAA
**
7996373 CAAAGCTCCTCTAAACAGAGGCTCAACAACTTTAAAAAATAAA
1 CAAAGCTCCTCTAAACAGAGGCTCAATGAC-TT-AAAAATAAA
*
7996416 CAAAGCTCATCTAAACAGAGGC
1 CAAAGCTCCTCTAAACAGAGGC
7996438 ATCACAACTT
Statistics
Matches: 301, Mismatches: 47, Indels: 32
0.79 0.12 0.08
Matches are distributed among these distances:
39 1 0.00
40 20 0.07
41 10 0.03
42 117 0.39
43 34 0.11
44 86 0.29
45 32 0.11
46 1 0.00
ACGTcount: A:0.44, C:0.20, G:0.12, T:0.23
Consensus pattern (41 bp):
CAAAGCTCCTCTAAACAGAGGCTCAATGACTTAAAAATAAA
Found at i:7996300 original size:128 final size:129
Alignment explanation
Indices: 7996030--7996437 Score: 405
Period size: 128 Copynumber: 3.2 Consensus size: 129
7996020 AAATTTTGAT
* * * * * * *
7996030 CAAAGCTCCTCTAAGTAAAGGCTCAACGACTTTGAAAAAAATAAATAAAGCTCCTCTAAATAGAG
1 CAAAGCTCATCTAAATAGAGGCTCAACGAC-TT--AAACAATAAACAAAGCTACTCTAAACAGAG
* * * ** * * * * *
7996095 GCTCCATGACCTT-AAAAAT-AA-ATGGCTCATCCAATCAGAAGCTCAATGACTTTTGAAAAATA
63 GCTCAACGATCTTGAAAAATAAACAAAGCTCCTCTAAACAGAGGCTCAATGACTTTTAAAAAATA
7996157 AA
128 AA
* * * * * *
7996159 CCAAGCTCCTCTAAATAGAGGCTCAATGACTTAAACAATTAACAAAGCTCCTCTAAACAGAGTCT
1 CAAAGCTCATCTAAATAGAGGCTCAACGACTTAAACAATAAACAAAGCTACTCTAAACAGAGGCT
* * **
7996224 TAATGA-CTT-AAATAATAAACAAAGCTCCTCTAAACAGAGGCTTGATGACTTTTAAAAAATAAA
66 CAACGATCTTGAAA-AATAAACAAAGCTCCTCTAAACAGAGGCTCAATGACTTTTAAAAAATAAA
** * * *
7996287 CAAAGCTTTTCTAAATAAAGGCTCAACGACTTAAATAATAAACAAAGCTATTCTAAACAGAGGCT
1 CAAAGCTCATCTAAATAGAGGCTCAACGACTTAAACAATAAACAAAGCTACTCTAAACAGAGGCT
* **
7996352 CAACGATTTTTGAAAAATAAACAAAGCTCCTCTAAACAGAGGCTCAACAAC-TTTAAAAAATAAA
66 CAACGA-TCTTGAAAAATAAACAAAGCTCCTCTAAACAGAGGCTCAATGACTTTTAAAAAATAAA
*
7996416 CAAAGCTCATCTAAACAGAGGC
1 CAAAGCTCATCTAAATAGAGGC
7996438 ATCACAACTT
Statistics
Matches: 232, Mismatches: 41, Indels: 12
0.81 0.14 0.04
Matches are distributed among these distances:
125 6 0.03
126 35 0.15
127 2 0.01
128 95 0.41
129 57 0.25
130 34 0.15
131 3 0.01
ACGTcount: A:0.44, C:0.20, G:0.12, T:0.23
Consensus pattern (129 bp):
CAAAGCTCATCTAAATAGAGGCTCAACGACTTAAACAATAAACAAAGCTACTCTAAACAGAGGCT
CAACGATCTTGAAAAATAAACAAAGCTCCTCTAAACAGAGGCTCAATGACTTTTAAAAAATAAA
Found at i:7996327 original size:86 final size:86
Alignment explanation
Indices: 7996030--7996437 Score: 380
Period size: 86 Copynumber: 4.7 Consensus size: 86
7996020 AAATTTTGAT
** * * * *
7996030 CAAAGCTCCTCTAAGTAAAGGCTCAACGACTTTGAAAAAAATAAATAAAGCTCCTCTAAATAGAG
1 CAAAGCTCCTCTAAACAGAGGCTCAACGAC-TT--AAATAATAAACAAAGCTCCTCTAAACAGAG
* *
7996095 GCTCCATGAC-CTT-AAAAAT-AA
63 GCTCAATGACTTTTAAAAAATAAA
** * * * * * * *
7996116 -ATGGCTCATCCAATCAGAAGCTCAATGACTTTTGAAA-AATAAACCAAGCTCCTCTAAATAGAG
1 CAAAGCTCCTCTAAACAGAGGCTCAACGAC--TT-AAATAATAAACAAAGCTCCTCTAAACAGAG
* *
7996179 GCTCAATGAC--TTAAACAATTAA
63 GCTCAATGACTTTTAAAAAATAAA
* * *
7996201 CAAAGCTCCTCTAAACAGAGTCTTAATGACTTAAATAATAAACAAAGCTCCTCTAAACAGAGGCT
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACTTAAATAATAAACAAAGCTCCTCTAAACAGAGGCT
**
7996266 TGATGACTTTTAAAAAATAAA
66 CAATGACTTTTAAAAAATAAA
** * * **
7996287 CAAAGCTTTTCTAAATAAAGGCTCAACGACTTAAATAATAAACAAAGCTATTCTAAACAGAGGCT
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACTTAAATAATAAACAAAGCTCCTCTAAACAGAGGCT
* * *
7996352 CAACGATTTTTGAAAAATAAA
66 CAATGACTTTTAAAAAATAAA
* * *
7996373 CAAAGCTCCTCTAAACAGAGGCTCAACAACTTTAAAAAATAAACAAAGCTCATCTAAACAGAGGC
1 CAAAGCTCCTCTAAACAGAGGCTCAACGAC-TTAAATAATAAACAAAGCTCCTCTAAACAGAGGC
7996438 ATCACAACTT
Statistics
Matches: 264, Mismatches: 50, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
83 5 0.02
84 72 0.27
85 25 0.09
86 131 0.50
87 31 0.12
ACGTcount: A:0.44, C:0.20, G:0.12, T:0.23
Consensus pattern (86 bp):
CAAAGCTCCTCTAAACAGAGGCTCAACGACTTAAATAATAAACAAAGCTCCTCTAAACAGAGGCT
CAATGACTTTTAAAAAATAAA
Found at i:7996592 original size:17 final size:17
Alignment explanation
Indices: 7996572--7996605 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
7996562 TCCTATTTCA
7996572 AGGATTAGAAACTTACT
1 AGGATTAGAAACTTACT
7996589 AGGATTAGAAACTTACT
1 AGGATTAGAAACTTACT
7996606 TGACAAGCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (17 bp):
AGGATTAGAAACTTACT
Found at i:7997519 original size:22 final size:21
Alignment explanation
Indices: 7997483--7997524 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
7997473 GTCTTGATTC
7997483 TTCTTTTTTCATTCCCTTTTTT
1 TTCTTTTTTCATT-CCTTTTTT
**
7997505 TTCTTTTTTTTTTCCTTTTT
1 TTCTTTTTTCATTCCTTTTT
7997525 CTTTTAAGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (21 bp):
TTCTTTTTTCATTCCTTTTTT
Found at i:8007849 original size:59 final size:56
Alignment explanation
Indices: 8007784--8008057 Score: 327
Period size: 58 Copynumber: 4.7 Consensus size: 56
8007774 TTTGTACAAG
*
8007784 AAAAATTGATACTTTCAACTTTTTCTCCAAAAA-ACCCTTTTTTAGAAAA-TTATTTTCAA
1 AAAAATTGATACTTTCAACTTTTTCT-CAAAAATA---TTTTTTAAAAAACTTATTTT-AA
* * * * *
8007843 AAAAATTGATACTTTCAACTTTTCCTTGAAAATTTTTTTTTAGAAAACTTATTTTAA
1 AAAAATTGATACTTTCAACTTTTTC-TCAAAAATATTTTTTAAAAAACTTATTTTAA
*
8007900 AGGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAAAAAATTTATTTTAA
1 A--AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAAAAAACTTATTTTAA
* *
8007958 AGGAAAATTGATACTTTAAACTTTTTTTCAAAAATATTTTTTAAAAAACTTATTTTCAA
1 A--AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAAAAAACTTATTTT-AA
* *
8008017 GGAATATTGATACTTTCAACTTTTTCTCAAAAATATTTTTT
1 -AAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTT
8008058 TTGGAATTTT
Statistics
Matches: 191, Mismatches: 17, Indels: 15
0.86 0.08 0.07
Matches are distributed among these distances:
57 15 0.08
58 122 0.64
59 53 0.28
60 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (56 bp):
AAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAAAAAACTTATTTTAA
Found at i:8008019 original size:116 final size:115
Alignment explanation
Indices: 8007780--8008057 Score: 382
Period size: 116 Copynumber: 2.4 Consensus size: 115
8007770 TGTTTTTGTA
* *
8007780 CAAGAAAAATTGATACTTTCAACTTTTTCTCCAAAAA-ACCCTTTTTTAGAAAATTATTTTCAAA
1 CAAGGAAAATTGATACTTTCAACTTTTTCT-CAAAAATA---TTTTTTAAAAAATTATTTTCAAA
* * * * *
8007844 AAAATTGATACTTTCAACTTTTCCTTGAAAATTTTTTTTTAGAAAACTTATTTT
62 AAAATTGATACTTTAAACTTTTCCTTCAAAAATATTTTTTAAAAAACTTATTTT
*
8007898 AAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAAAAAATTTATTTT-AAAGGA
1 CAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAAAAAA-TTATTTTCAAA--A
*
8007962 AAATTGATACTTTAAACTTTT-TTTCAAAAATATTTTTTAAAAAACTTATTTT
63 AAATTGATACTTTAAACTTTTCCTTCAAAAATATTTTTTAAAAAACTTATTTT
*
8008014 CAAGGAATATTGATACTTTCAACTTTTTCTCAAAAATATTTTTT
1 CAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTT
8008058 TTGGAATTTT
Statistics
Matches: 145, Mismatches: 11, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
115 14 0.10
116 75 0.52
117 27 0.19
118 29 0.20
ACGTcount: A:0.39, C:0.12, G:0.05, T:0.44
Consensus pattern (115 bp):
CAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAAAAAATTATTTTCAAAAAAA
TTGATACTTTAAACTTTTCCTTCAAAAATATTTTTTAAAAAACTTATTTT
Found at i:8008127 original size:14 final size:11
Alignment explanation
Indices: 8008086--8008119 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
8008076 AAATCATTTA
8008086 AAAAT-AAAAT
1 AAAATAAAAAT
8008096 AAAATAAAAAT
1 AAAATAAAAAT
8008107 AAAATAAGAAAT
1 AAAATAA-AAAT
8008119 A
1 A
8008120 CTAAATAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 5 0.23
11 12 0.55
12 5 0.23
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:8008153 original size:3 final size:3
Alignment explanation
Indices: 8008145--8008179 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
8008135 CTAATCAATA
8008145 AAT AAT AAT AAT AA- AAT AAAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AA
8008180 AAAAAACCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 25 0.83
4 3 0.10
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:8008156 original size:22 final size:22
Alignment explanation
Indices: 8008088--8008181 Score: 79
Period size: 21 Copynumber: 4.3 Consensus size: 22
8008078 ATCATTTAAA
8008088 AATAAAATAAAATAAA-AATAA-
1 AATAAAAT-AAATAAATAATAAT
* **
8008109 AATAAGAA-ATACTAAATAATTCT
1 AATAA-AATA-AATAAATAATAAT
** *
8008132 AATCTAATCAATAAATAATAAT
1 AATAAAATAAATAAATAATAAT
8008154 AATAAAATAAAT-AATAATAAT
1 AATAAAATAAATAAATAATAAT
8008175 AATAAAA
1 AATAAAA
8008182 AAAACCTTTA
Statistics
Matches: 56, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
20 1 0.02
21 26 0.46
22 26 0.46
23 3 0.05
ACGTcount: A:0.68, C:0.04, G:0.01, T:0.27
Consensus pattern (22 bp):
AATAAAATAAATAAATAATAAT
Found at i:8008162 original size:18 final size:18
Alignment explanation
Indices: 8008141--8008176 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
8008131 TAATCTAATC
8008141 AATAAATAATAATAATAA
1 AATAAATAATAATAATAA
8008159 AATAAATAATAATAATAA
1 AATAAATAATAATAATAA
8008177 TAAAAAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (18 bp):
AATAAATAATAATAATAA
Found at i:8008168 original size:12 final size:13
Alignment explanation
Indices: 8008136--8008179 Score: 54
Period size: 15 Copynumber: 3.2 Consensus size: 13
8008126 AATTCTAATC
8008136 TAATCAATAAATAA
1 TAAT-AATAAATAA
8008150 TAATAATAAAATAAA
1 TAATAAT-AAAT-AA
8008165 TAATAAT-AATAA
1 TAATAATAAATAA
8008177 TAA
1 TAA
8008180 AAAAAACCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 5 0.18
13 6 0.21
14 8 0.29
15 9 0.32
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (13 bp):
TAATAATAAATAA
Found at i:8008986 original size:48 final size:47
Alignment explanation
Indices: 8008912--8009045 Score: 139
Period size: 48 Copynumber: 2.8 Consensus size: 47
8008902 AAAAAAGATA
* *
8008912 AATAATAAATATATATATATACTAATAGATAAATAATAGATA-ATAGTT
1 AATAATAAAAATATATATACACTAATAGATAAATAATA-ATATATA-TT
* *
8008960 AATAATAAAAATTTATATACATTAATAGATAAATAATAATATATATT
1 AATAATAAAAATATATATACACTAATAGATAAATAATAATATATATT
* * * *
8009007 AATGAATAATAATA-ATA-GCAATAAATAAATAAATAATAA
1 AAT-AATAAAAATATATATACACT-AATAGATAAATAATAA
8009046 ATAATAAATA
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
46 3 0.04
47 26 0.35
48 45 0.61
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (47 bp):
AATAATAAAAATATATATACACTAATAGATAAATAATAATATATATT
Found at i:8009035 original size:4 final size:4
Alignment explanation
Indices: 8009026--8009073 Score: 57
Period size: 4 Copynumber: 12.5 Consensus size: 4
8009016 TAATAATAGC
*
8009026 AATA AATA AATA AAT- AATA AAT- AATA AATA AATA AGATA CA-A AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA A-ATA AATA AATA
8009072 AA
1 AA
8009074 AATACAAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
3 8 0.21
4 27 0.71
5 3 0.08
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:8011881 original size:12 final size:12
Alignment explanation
Indices: 8011859--8011888 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8011849 AGTCATTTTT
8011859 ACGAA-TTATTC
1 ACGAATTTATTC
8011870 ACGAATTTATTC
1 ACGAATTTATTC
8011882 ACGAATT
1 ACGAATT
8011889 GTTCGTCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.28
12 13 0.72
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37
Consensus pattern (12 bp):
ACGAATTTATTC
Found at i:8012658 original size:11 final size:11
Alignment explanation
Indices: 8012642--8012678 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
8012632 TACAAAATTC
*
8012642 AATTTATTTCA
1 AATTTATTTAA
8012653 AATTTATTTAA
1 AATTTATTTAA
8012664 AATTTATTTAA
1 AATTTATTTAA
8012675 AATT
1 AATT
8012679 ATTAAATCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (11 bp):
AATTTATTTAA
Found at i:8013401 original size:11 final size:12
Alignment explanation
Indices: 8013387--8013450 Score: 55
Period size: 11 Copynumber: 5.6 Consensus size: 12
8013377 AAAATATAAT
8013387 ATAAAAATTAT-
1 ATAAAAATTATA
*
8013398 ATAAAAA-AATGA
1 ATAAAAATTAT-A
*
8013410 ATAAAAATTTTA
1 ATAAAAATTATA
*
8013422 ATATAAATTAT-
1 ATAAAAATTATA
*
8013433 ATATAAATT-TA
1 ATAAAAATTATA
8013444 ATAAAAA
1 ATAAAAA
8013451 ATAAAATTAT
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
10 3 0.07
11 22 0.51
12 17 0.40
13 1 0.02
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (12 bp):
ATAAAAATTATA
Found at i:8013452 original size:23 final size:23
Alignment explanation
Indices: 8013387--8013452 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 23
8013377 AAAATATAAT
*
8013387 ATAAAAATTAT-ATAAAAAAATGA
1 ATAAAAATTTTAAT-AAAAAATGA
* *
8013410 ATAAAAATTTTAAT-ATAAATTA
1 ATAAAAATTTTAATAAAAAATGA
*
8013432 TATATAAA-TTTAATAAAAAAT
1 -ATAAAAATTTTAATAAAAAAT
8013453 AAAATTATAT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
22 12 0.34
23 21 0.60
24 2 0.06
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.35
Consensus pattern (23 bp):
ATAAAAATTTTAATAAAAAATGA
Found at i:8013512 original size:18 final size:20
Alignment explanation
Indices: 8013490--8013540 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
8013480 ATTATAACAC
8013490 TTAAT-TTTTATATAAAATA
1 TTAATATTTTATATAAAATA
**
8013509 -TAATATAAATATATAAAATA
1 TTAATAT-TTTATATAAAATA
8013529 TTAATATTTTAT
1 TTAATATTTTAT
8013541 GTTATATAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
18 4 0.16
19 1 0.04
20 14 0.56
21 6 0.24
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TTAATATTTTATATAAAATA
Found at i:8015794 original size:2 final size:2
Alignment explanation
Indices: 8015787--8015827 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
8015777 CTTTCTATTT
* *
8015787 TA TA TA TA TA TA TA TA TA CA TA TA TA TA CA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8015828 GTGTGTATGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:8015838 original size:6 final size:6
Alignment explanation
Indices: 8015829--8015853 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8015819 TATATATATG
8015829 TGTGTA TGTGTA TGTGTA TGTGTA T
1 TGTGTA TGTGTA TGTGTA TGTGTA T
8015854 CGTGAGTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.32, T:0.52
Consensus pattern (6 bp):
TGTGTA
Found at i:8016046 original size:3 final size:3
Alignment explanation
Indices: 8016038--8016066 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8016028 CACTTTTTAT
8016038 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8016067 TTAATTTCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:8018919 original size:30 final size:30
Alignment explanation
Indices: 8018881--8018957 Score: 104
Period size: 30 Copynumber: 2.5 Consensus size: 30
8018871 TTGTACATAT
8018881 ACAAAATTTAAAATTTAATC-CTTATACTCG
1 ACAAAATTTAAAATTTAATCTC-TATACTCG
*
8018911 -CATAAATTTAAAATTTAATCTCTATATTCG
1 ACA-AAATTTAAAATTTAATCTCTATACTCG
8018941 TACAAAATTTAAAATTT
1 -ACAAAATTTAAAATTT
8018958 GGTCACTCTA
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
29 2 0.05
30 24 0.57
31 14 0.33
32 2 0.05
ACGTcount: A:0.44, C:0.13, G:0.03, T:0.40
Consensus pattern (30 bp):
ACAAAATTTAAAATTTAATCTCTATACTCG
Found at i:8019102 original size:14 final size:15
Alignment explanation
Indices: 8019085--8019127 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 15
8019075 TTTATTATAT
8019085 ATAAT-TAATTATTA
1 ATAATATAATTATTA
*
8019099 ATAATATCA-TATTA
1 ATAATATAATTATTA
*
8019113 ATAATATTATTATTA
1 ATAATATAATTATTA
8019128 TTATCAGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 18 0.72
15 7 0.28
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (15 bp):
ATAATATAATTATTA
Found at i:8019110 original size:26 final size:26
Alignment explanation
Indices: 8019081--8019155 Score: 64
Period size: 26 Copynumber: 2.8 Consensus size: 26
8019071 TAGTTTTATT
*
8019081 ATATATAATTAATTATTAATAATATC
1 ATATATAATAAATTATTAATAATATC
* *
8019107 ATAT-TAATAATATTATTATTATTATC
1 ATATATAATAA-ATTATTAATAATATC
*
8019133 AGTTATATTAATCAATTA-TAATA
1 A--TATA-TAATAAATTATTAATA
8019156 TTAATAATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
25 5 0.13
26 18 0.46
28 7 0.18
29 4 0.10
30 5 0.13
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.48
Consensus pattern (26 bp):
ATATATAATAAATTATTAATAATATC
Found at i:8019179 original size:46 final size:44
Alignment explanation
Indices: 8019094--8019179 Score: 104
Period size: 46 Copynumber: 1.9 Consensus size: 44
8019084 TATAATTAAT
* *
8019094 TATTAATAATATCATATTAATAATATTATTATTATTATCAGTTA
1 TATTAATAATATAATATTAATAATATTATTAATATTATCAGTTA
8019138 TATTAATCAATTATAATATTAATAAT-TTACATTAATA-TATCA
1 TATTAAT-AA-TATAATATTAATAATATT--ATTAATATTATCA
8019180 AAATTAATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
44 7 0.19
45 4 0.11
46 19 0.53
47 6 0.17
ACGTcount: A:0.45, C:0.06, G:0.01, T:0.48
Consensus pattern (44 bp):
TATTAATAATATAATATTAATAATATTATTAATATTATCAGTTA
Found at i:8020312 original size:18 final size:18
Alignment explanation
Indices: 8020289--8020344 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
8020279 CTATGATAAA
*
8020289 AAAATATCATAATTATTT
1 AAAATATGATAATTATTT
*
8020307 AAAATA-GATAATTAATT
1 AAAATATGATAATTATTT
*
8020324 -AAATAGTGATAATTCTTT
1 AAAATA-TGATAATTATTT
8020342 AAA
1 AAA
8020345 TTTATTCGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
16 5 0.16
17 9 0.29
18 15 0.48
19 2 0.06
ACGTcount: A:0.52, C:0.04, G:0.05, T:0.39
Consensus pattern (18 bp):
AAAATATGATAATTATTT
Found at i:8020319 original size:17 final size:18
Alignment explanation
Indices: 8020297--8020344 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
8020287 AAAAAATATC
8020297 ATAATTATTTAAAATA-G
1 ATAATTATTTAAAATAGG
*
8020314 ATAATTAATT-AAATAGTG
1 ATAATTATTTAAAATAG-G
*
8020332 ATAATTCTTTAAA
1 ATAATTATTTAAA
8020345 TTTATTCGAC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
16 5 0.20
17 9 0.36
18 9 0.36
19 2 0.08
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.42
Consensus pattern (18 bp):
ATAATTATTTAAAATAGG
Found at i:8028171 original size:16 final size:17
Alignment explanation
Indices: 8028150--8028189 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
8028140 TTTATTAAAA
8028150 TCATAAC-AAAAATTTT
1 TCATAACAAAAAATTTT
8028166 TCATAAACAAAAAATTTT
1 TCAT-AACAAAAAATTTT
8028184 T-ATAAC
1 TCATAAC
8028190 CTAATATTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 7 0.32
17 5 0.23
18 10 0.45
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (17 bp):
TCATAACAAAAAATTTT
Found at i:8032367 original size:19 final size:19
Alignment explanation
Indices: 8032343--8032379 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8032333 AGAAAATAAC
8032343 GAAAAATAAATAAACATAT
1 GAAAAATAAATAAACATAT
* *
8032362 GAAAAATAGATAATCATA
1 GAAAAATAAATAAACATA
8032380 GTTGATGATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.65, C:0.05, G:0.08, T:0.22
Consensus pattern (19 bp):
GAAAAATAAATAAACATAT
Found at i:8034461 original size:22 final size:21
Alignment explanation
Indices: 8034420--8034459 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
8034410 AAATATAAAA
8034420 ATTCAATTAGGATAGTAAATT
1 ATTCAATTAGGATAGTAAATT
*
8034441 ATTCAAATTA-GATATTAAA
1 ATTC-AATTAGGATAGTAAA
8034460 ATGTATGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.38
Consensus pattern (21 bp):
ATTCAATTAGGATAGTAAATT
Found at i:8036720 original size:31 final size:30
Alignment explanation
Indices: 8036685--8036769 Score: 89
Period size: 31 Copynumber: 2.7 Consensus size: 30
8036675 ATGATTCATG
*
8036685 TACTCACACAAAATTTAAAATTTAATTCTTA
1 TACTCA-ACAAAATTTAAAATTTAATTCCTA
* *
8036716 TACTCGAACAAAATTTGACATTTAATTCCTA
1 TACTC-AACAAAATTTAAAATTTAATTCCTA
* **
8036747 TACTCGTATGAAATTTAAAATTT
1 TACTC-AACAAAATTTAAAATTT
8036770 TTACTAATAT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
31 44 0.98
32 1 0.02
ACGTcount: A:0.41, C:0.15, G:0.05, T:0.39
Consensus pattern (30 bp):
TACTCAACAAAATTTAAAATTTAATTCCTA
Found at i:8037916 original size:31 final size:31
Alignment explanation
Indices: 8037880--8037955 Score: 107
Period size: 31 Copynumber: 2.5 Consensus size: 31
8037870 TTAGAGGGAC
* * * *
8037880 TAAATTTTAAATTTCTTATGAGTACGAGGAT
1 TAAATTTTAAATTTCATACGAGTACAAAGAT
*
8037911 TAAATTTTAAATTTCATACGAGTATAAAGAT
1 TAAATTTTAAATTTCATACGAGTACAAAGAT
8037942 TAAATTTTAAATTT
1 TAAATTTTAAATTT
8037956 TGTATTAACA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.43
Consensus pattern (31 bp):
TAAATTTTAAATTTCATACGAGTACAAAGAT
Found at i:8037938 original size:24 final size:25
Alignment explanation
Indices: 8037902--8037948 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
8037892 TTCTTATGAG
**
8037902 TACGAGGATTAAATTTTAAATTTCA
1 TACGAGGATTAAAGATTAAATTTCA
*
8037927 TACGAGTA-TAAAGATTAAATTT
1 TACGAGGATTAAAGATTAAATTT
8037949 TAAATTTTGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.43, C:0.06, G:0.13, T:0.38
Consensus pattern (25 bp):
TACGAGGATTAAAGATTAAATTTCA
Found at i:8041144 original size:23 final size:21
Alignment explanation
Indices: 8041088--8041144 Score: 55
Period size: 24 Copynumber: 2.7 Consensus size: 21
8041078 TTTAAGTTTT
*
8041088 CAAAAAAA-A-TTTATAAAAG
1 CAAAAAAATATTTTATAAAAA
*
8041107 CAAAAAAATCCTTTTAATAAATAA
1 CAAAAAAAT-ATTTT-ATAAA-AA
8041131 CAAAAAAATATTTT
1 CAAAAAAATATTTT
8041145 CAAATAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 8 0.27
22 3 0.10
23 9 0.30
24 10 0.33
ACGTcount: A:0.61, C:0.09, G:0.02, T:0.28
Consensus pattern (21 bp):
CAAAAAAATATTTTATAAAAA
Found at i:8041265 original size:15 final size:15
Alignment explanation
Indices: 8041245--8041290 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
8041235 AACTATTAAG
8041245 AAATTTCATAAAAAA
1 AAATTTCATAAAAAA
8041260 AAATTTTCA-AAAAAA
1 AAA-TTTCATAAAAAA
**
8041275 AAATTAAATAAAAAA
1 AAATTTCATAAAAAA
8041290 A
1 A
8041291 TAAAATAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 3 0.11
15 19 0.70
16 5 0.19
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (15 bp):
AAATTTCATAAAAAA
Found at i:8042009 original size:42 final size:43
Alignment explanation
Indices: 8041958--8042039 Score: 112
Period size: 42 Copynumber: 1.9 Consensus size: 43
8041948 TAAATTTGAA
* * *
8041958 ATTATTTTATTATTTTTCATTGCTTATACTTGCTTTATTATTT
1 ATTATTTTATTACTTTTCACTGCTTATACTTGCTTAATTATTT
* *
8042001 ATTA-TTTATTCCTTTTCACTGTTTATACTTGCTTAATTA
1 ATTATTTTATTACTTTTCACTGCTTATACTTGCTTAATTA
8042040 CTCATTTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
42 30 0.88
43 4 0.12
ACGTcount: A:0.22, C:0.12, G:0.05, T:0.61
Consensus pattern (43 bp):
ATTATTTTATTACTTTTCACTGCTTATACTTGCTTAATTATTT
Found at i:8046440 original size:121 final size:121
Alignment explanation
Indices: 8046070--8046575 Score: 453
Period size: 121 Copynumber: 4.2 Consensus size: 121
8046060 CTCAGTTTAG
* * *
8046070 ATTATTTCTTATGACTCGTGGTTTCAT-CCAGTCATTTATTTTTTACCTCGACTCAATTTTGGTC
1 ATTATTTCTTATGACTCGTGGTTTCATCCCAGTCATTTATTTTTGACCTCAACTCAATCTTGGTC
* * * * * * * * *
8046134 ACTTTAGTTTTTGACTCGTGGTTTTGT-TATGGTCACCCAATCTTAGCTTAGTCCAA
66 ACTTCATTTTTTGACTCATGATTTCGTCT-TGATCACCCGATCTTGGCTCAGTCCAA
* * * * * * * *** *
8046190 A-CATTTCTTATAACTCGTGATTTCATCTCGGTCATTTATTTTTTATCTCAACTTGGTTTTGGTC
1 ATTATTTCTTATGACTCGTGGTTTCATCCCAGTCATTTATTTTTGACCTCAACTCAATCTTGGTC
* * * * ** * *
8046254 ACTT-TTTTTTTGACTTATGGTTTCGTCTCGATCACTTGATTTTGGCTCATTCCAA
66 ACTTCATTTTTTGACTCATGATTTCGTCTTGATCACCCGATCTTGGCTCAGTCCAA
* * * * * * *
8046309 ATCATTTCTTATGACTTGTGTTTTTATCCCAATAATTTATTTTTGACCTCAACTCGATCTTGGTC
1 ATTATTTCTTATGACTCGTGGTTTCATCCCAGTCATTTATTTTTGACCTCAACTCAATCTTGGTC
* * * * * *
8046374 ACTTCATTTTTTGACTCATGATTTCGTTTTGGTCACTCGATCTTGGCTTAGTCTAG
66 ACTTCATTTTTTGACTCATGATTTCGTCTTGATCACCCGATCTTGGCTCAGTCCAA
* * * * * * * *
8046430 ATTATTTCTTAGGACTCATGGTTTTATCTCGGTCATTTATTTTTGACCTTAACTTAATCCTGGTC
1 ATTATTTCTTATGACTCGTGGTTTCATCCCAGTCATTTATTTTTGACCTCAACTCAATCTTGGTC
* * * * *
8046495 ATTTCATTTTTTGACTTATGATTTTGTCTTGATCACCCGATCGTGGCTCAATCCAA
66 ACTTCATTTTTTGACTCATGATTTCGTCTTGATCACCCGATCTTGGCTCAGTCCAA
*
8046551 ATTATTTCTTATGACTTGTGGTTTC
1 ATTATTTCTTATGACTCGTGGTTTC
8046576 GTCCTAGTTT
Statistics
Matches: 305, Mismatches: 77, Indels: 7
0.78 0.20 0.02
Matches are distributed among these distances:
119 58 0.19
120 90 0.30
121 157 0.51
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.47
Consensus pattern (121 bp):
ATTATTTCTTATGACTCGTGGTTTCATCCCAGTCATTTATTTTTGACCTCAACTCAATCTTGGTC
ACTTCATTTTTTGACTCATGATTTCGTCTTGATCACCCGATCTTGGCTCAGTCCAA
Found at i:8047315 original size:20 final size:19
Alignment explanation
Indices: 8047292--8047329 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
8047282 ATATTTTAAG
*
8047292 TTTTGTTTTATTTTTATTTC
1 TTTTGTTTT-TATTTATTTC
8047312 TTTTGTTTTTATTTATTT
1 TTTTGTTTTTATTTATTT
8047330 AGTAATTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.11, C:0.03, G:0.05, T:0.82
Consensus pattern (19 bp):
TTTTGTTTTTATTTATTTC
Found at i:8050043 original size:26 final size:28
Alignment explanation
Indices: 8050013--8050067 Score: 78
Period size: 26 Copynumber: 2.0 Consensus size: 28
8050003 GTGTATATAT
8050013 CTAATTGTATGTGCACAT-T-ATATTGA
1 CTAATTGTATGTGCACATCTCATATTGA
* *
8050039 CTAATTTTATTTGCACATCTCATATTGA
1 CTAATTGTATGTGCACATCTCATATTGA
8050067 C
1 C
8050068 ATGTCATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 16 0.64
27 1 0.04
28 8 0.32
ACGTcount: A:0.29, C:0.16, G:0.11, T:0.44
Consensus pattern (28 bp):
CTAATTGTATGTGCACATCTCATATTGA
Found at i:8053500 original size:29 final size:29
Alignment explanation
Indices: 8053432--8053500 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
8053422 ATGAGACTTA
8053432 AATTATAATAAAATATTTAATATGATATCTG
1 AATTAT-A-AAAATATTTAATATGATATCTG
* * * * *
8053463 GATTTTAAAAATTTTTAATGTGATATTTG
1 AATTATAAAAATATTTAATATGATATCTG
8053492 AATTATAAA
1 AATTATAAA
8053501 TTTGTGAACT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
29 26 0.84
30 1 0.03
31 4 0.13
ACGTcount: A:0.45, C:0.01, G:0.09, T:0.45
Consensus pattern (29 bp):
AATTATAAAAATATTTAATATGATATCTG
Found at i:8054414 original size:23 final size:21
Alignment explanation
Indices: 8054384--8054444 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 21
8054374 TGCTCACTTT
*
8054384 TAAAAAAAATTAGTAAAATAAAA
1 TAAAAAAAACTA--AAAATAAAA
8054407 T-AAAAAAACTAAAAATAAAA
1 TAAAAAAAACTAAAAATAAAA
8054427 TAATAAAAAACTTAAAAA
1 TAA-AAAAAAC-TAAAAA
8054445 ACAACAATGG
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
20 10 0.29
21 1 0.03
22 16 0.47
23 7 0.21
ACGTcount: A:0.75, C:0.03, G:0.02, T:0.20
Consensus pattern (21 bp):
TAAAAAAAACTAAAAATAAAA
Found at i:8056725 original size:46 final size:45
Alignment explanation
Indices: 8056620--8056752 Score: 176
Period size: 47 Copynumber: 2.9 Consensus size: 45
8056610 TAAATAAAGT
* *
8056620 TCAAGTCACCCTTTAGGGTTTTCAACTTGAACTTTTTTTTTTTTA
1 TCAAGCCACCCTTTCGGGTTTTCAACTTGAACTTTTTTTTTTTTA
* * * * *
8056665 TACCAGCAACCCCTTTCGAGTTTTCAACTTAAACTTTTTTTTTTTTGC
1 T-CAAGCCA-CCCTTTCGGGTTTTCAACTTGAACTTTTTTTTTTTT-A
8056713 TCAAGCCACCCTTTCGGGTTTTCAACTTGAACTTTTTTTT
1 TCAAGCCACCCTTTCGGGTTTTCAACTTGAACTTTTTTTT
8056753 AAGTGAAGTA
Statistics
Matches: 74, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
45 1 0.01
46 34 0.46
47 38 0.51
48 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.11, T:0.47
Consensus pattern (45 bp):
TCAAGCCACCCTTTCGGGTTTTCAACTTGAACTTTTTTTTTTTTA
Found at i:8066148 original size:21 final size:21
Alignment explanation
Indices: 8066124--8066167 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
8066114 GGACTTAAAT
*
8066124 TTTTAACTTTTTTACTTTGTC
1 TTTTAACTATTTTACTTTGTC
* * *
8066145 TTTTCACTATTTTATTTTTTC
1 TTTTAACTATTTTACTTTGTC
8066166 TT
1 TT
8066168 GAGCCTTATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.14, C:0.14, G:0.02, T:0.70
Consensus pattern (21 bp):
TTTTAACTATTTTACTTTGTC
Found at i:8072743 original size:17 final size:17
Alignment explanation
Indices: 8072673--8072746 Score: 51
Period size: 17 Copynumber: 4.2 Consensus size: 17
8072663 AAAAATTAGT
*
8072673 AAAATAAAAATAA-AAAT
1 AAAATAAAAA-AATAAAA
* **
8072690 AAAATAAAATAATGCAA
1 AAAATAAAAAAATAAAA
* * *
8072707 AAACTTAAAAAATGGTAAA
1 AAAATAAAAAAAT--AAAA
8072726 AAAATAAAAAAATAAAA
1 AAAATAAAAAAATAAAA
8072743 AAAA
1 AAAA
8072747 CCTGCGATCA
Statistics
Matches: 42, Mismatches: 12, Indels: 6
0.70 0.20 0.10
Matches are distributed among these distances:
16 2 0.05
17 27 0.64
19 13 0.31
ACGTcount: A:0.77, C:0.03, G:0.04, T:0.16
Consensus pattern (17 bp):
AAAATAAAAAAATAAAA
Found at i:8073519 original size:3 final size:3
Alignment explanation
Indices: 8073513--8073550 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
8073503 AAAAAAAGAA
*
8073513 AAT AAT ACT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8073551 ACATCAACTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:8078435 original size:14 final size:15
Alignment explanation
Indices: 8078418--8078450 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8078408 ATATAGTATT
*
8078418 AAAATTAT-AATTTA
1 AAAATTATGAATTCA
8078432 AAAATTATGAATTCA
1 AAAATTATGAATTCA
8078447 AAAA
1 AAAA
8078451 AATTTATGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (15 bp):
AAAATTATGAATTCA
Found at i:8079125 original size:17 final size:17
Alignment explanation
Indices: 8079086--8079126 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
8079076 AATTATCAAT
*
8079086 TTTTAAAATAAAAATAT
1 TTTTAAAATAAAAATAA
*
8079103 TATTTAACATAAAAATAA
1 T-TTTAAAATAAAAATAA
8079121 TTTTAA
1 TTTTAA
8079127 TAAATTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
TTTTAAAATAAAAATAA
Found at i:8080535 original size:4 final size:4
Alignment explanation
Indices: 8080528--8080564 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
8080518 TATATATATA
8080528 TATG TATG TATG TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG T
8080565 TTGGAATGTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:8084078 original size:18 final size:18
Alignment explanation
Indices: 8084057--8084103 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
8084047 TATTTTATTT
8084057 ATAAATAATATTATATAA
1 ATAAATAATATTATATAA
*
8084075 ATAAATAATATTATATTA
1 ATAAATAATATTATATAA
8084093 ATAAATAATAT
1 ATAAATAATAT
8084104 ATTAATATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
ATAAATAATATTATATAA
Done.