Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 44 of 117
Found at i:8084099 original size:15 final size:15
Alignment explanation
Indices: 8084052--8084220 Score: 68
Period size: 15 Copynumber: 10.9 Consensus size: 15
8084042 AGCATTATTT
*
8084052 TATTTATAAATAATA
1 TATTAATAAATAATA
8084067 TTATATAAATAAATAATATTA
1 -TAT-T-AATAAAT-A-A-TA
8084088 TATTAATAAATAATA
1 TATTAATAAATAATA
8084103 TATTAAT--AT-AT-
1 TATTAATAAATAATA
* *
8084114 TAATAAGT-AGT-ATA
1 TATTAA-TAAATAATA
8084128 CTATTAATAAATAATATA
1 -TATTAATAAAT-A-ATA
*
8084146 TTATTAACAAATAATA
1 -TATTAATAAATAATA
** *
8084162 TAACAATAAATACTA
1 TATTAATAAATAATA
*
8084177 TTAATTTAATTAATAA-A
1 -T-A-TTAATAAATAATA
8084194 TATT-AT-AATAATA
1 TATTAATAAATAATA
*
8084207 TATGAATAAATAAT
1 TATTAATAAATAAT
8084221 TTTATTTTAA
Statistics
Matches: 118, Mismatches: 16, Indels: 39
0.68 0.09 0.23
Matches are distributed among these distances:
11 5 0.04
12 8 0.07
13 11 0.09
14 5 0.04
15 34 0.29
16 9 0.08
17 5 0.04
18 33 0.28
19 2 0.02
20 4 0.03
21 2 0.02
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (15 bp):
TATTAATAAATAATA
Found at i:8084119 original size:41 final size:41
Alignment explanation
Indices: 8084068--8084148 Score: 119
Period size: 41 Copynumber: 2.0 Consensus size: 41
8084058 TAAATAATAT
8084068 TATATAAATAAATAATATTA-TATTAATAAATAATATATTAA
1 TATATAAATAAATAATA-TACTATTAATAAATAATATATTAA
* * *
8084109 TATATTAATAAGTAGTATACTATTAATAAATAATATATTA
1 TATATAAATAAATAATATACTATTAATAAATAATATATTA
8084149 TTAACAAATA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 2 0.06
41 34 0.94
ACGTcount: A:0.54, C:0.01, G:0.02, T:0.42
Consensus pattern (41 bp):
TATATAAATAAATAATATACTATTAATAAATAATATATTAA
Found at i:8084134 original size:18 final size:18
Alignment explanation
Indices: 8084052--8084163 Score: 84
Period size: 18 Copynumber: 5.9 Consensus size: 18
8084042 AGCATTATTT
*
8084052 TATTTATAAATAATATTA-
1 TATTAATAAATAATA-TAC
*
8084070 TATAAATAAATAATATTA-
1 TATTAATAAATAATA-TAC
*
8084088 TATTAATAAATAATATATTAATA
1 TATTAATAAAT-A-ATA-T-A-C
* *
8084111 TATTAATAAGTAGTATAC
1 TATTAATAAATAATATAC
*
8084129 TATTAATAAATAATATAT
1 TATTAATAAATAATATAC
*
8084147 TATTAACAAATAATATA
1 TATTAATAAATAATATA
8084164 ACAATAAATA
Statistics
Matches: 79, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
18 57 0.72
19 2 0.03
20 6 0.08
21 3 0.04
22 1 0.01
23 10 0.13
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (18 bp):
TATTAATAAATAATATAC
Found at i:8084299 original size:15 final size:15
Alignment explanation
Indices: 8084279--8084319 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
8084269 TATAATTATT
*
8084279 TTTTAATATTAATAA
1 TTTTAATATAAATAA
8084294 TTTTAATAATAAATAA
1 TTTTAAT-ATAAATAA
*
8084310 TTTCAATATA
1 TTTTAATATA
8084320 TTTTAATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (15 bp):
TTTTAATATAAATAA
Found at i:8084322 original size:26 final size:26
Alignment explanation
Indices: 8084289--8084354 Score: 100
Period size: 26 Copynumber: 2.6 Consensus size: 26
8084279 TTTTAATATT
8084289 AATA-ATTTTAATAATAAATAATTTC
1 AATATATTTTAATAATAAATAATTTC
*
8084314 AATATATTTTAATAATAAATAATTTT
1 AATATATTTTAATAATAAATAATTTC
*
8084340 TAT-TATTTTAATAAT
1 AATATATTTTAATAAT
8084355 TATATTAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
25 16 0.42
26 22 0.58
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (26 bp):
AATATATTTTAATAATAAATAATTTC
Found at i:8084338 original size:16 final size:16
Alignment explanation
Indices: 8084279--8084339 Score: 55
Period size: 15 Copynumber: 4.2 Consensus size: 16
8084269 TATAATTATT
*
8084279 TTTTAAT-ATTAATAA
1 TTTTAATAATAAATAA
8084294 TTTTAATAATAAATAA
1 TTTTAATAATAAATAA
*
8084310 -TTT--CAAT--AT-A
1 TTTTAATAATAAATAA
8084320 TTTTAATAATAAATAA
1 TTTTAATAATAAATAA
8084336 TTTT
1 TTTT
8084340 TATTATTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 13
0.69 0.06 0.25
Matches are distributed among these distances:
10 1 0.03
11 5 0.14
13 6 0.17
15 12 0.33
16 12 0.33
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (16 bp):
TTTTAATAATAAATAA
Found at i:8084352 original size:60 final size:60
Alignment explanation
Indices: 8084220--8084364 Score: 147
Period size: 60 Copynumber: 2.4 Consensus size: 60
8084210 GAATAAATAA
* * *
8084220 TTTTATTTTAAGT-ATTTTTATATTAATATAATATTAAATATTATTAAAATATAATTATTT
1 TTTTATTTTAA-TAATTTTAATAATAATATAATATTAAATATTATTAAAATATAATAATTT
* *
8084280 TTTAATATTAATAATTTTAATAATAA-ATAAT-TTCAATATATT-TTAATAATA-AATAATTT
1 TTTTATTTTAATAATTTTAATAATAATATAATATT-AA-ATATTATTAA-AATATAATAATTT
* *
8084339 TTATTATTTTAATAATTATATTAATA
1 TT-TTATTTTAATAATTTTAATAATA
8084365 TTATTTTTAA
Statistics
Matches: 71, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
58 2 0.03
59 21 0.30
60 48 0.68
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.54
Consensus pattern (60 bp):
TTTTATTTTAATAATTTTAATAATAATATAATATTAAATATTATTAAAATATAATAATTT
Found at i:8084499 original size:15 final size:14
Alignment explanation
Indices: 8084469--8084498 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
8084459 ATAAGTATTC
8084469 TTCAAAAATAATTT
1 TTCAAAAATAATTT
8084483 TTCAAAAATAATTT
1 TTCAAAAATAATTT
8084497 TT
1 TT
8084499 TACGAACCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (14 bp):
TTCAAAAATAATTT
Found at i:8085189 original size:5 final size:6
Alignment explanation
Indices: 8085164--8085188 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8085154 AAATTATTCA
8085164 TTATTT TTATTT TTATTT TTATTT T
1 TTATTT TTATTT TTATTT TTATTT T
8085189 AGAAATGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTATTT
Found at i:8085630 original size:3 final size:3
Alignment explanation
Indices: 8085622--8085656 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
8085612 ACAAAAACTA
8085622 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8085657 AAGGGCATGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8086290 original size:4 final size:4
Alignment explanation
Indices: 8086290--8086320 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
8086280 TTATGTATGT
8086290 ATGG ATGG ATGG ATGG ATGG ATGG ATGG ATG
1 ATGG ATGG ATGG ATGG ATGG ATGG ATGG ATG
8086321 TATGAATTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.48, T:0.26
Consensus pattern (4 bp):
ATGG
Found at i:8088227 original size:11 final size:10
Alignment explanation
Indices: 8088211--8088235 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8088201 GATCTGACTA
8088211 TTTTTTTTTC
1 TTTTTTTTTC
8088221 TTTTTTTTTC
1 TTTTTTTTTC
8088231 TTTTT
1 TTTTT
8088236 CTTGGGACTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:8092756 original size:16 final size:16
Alignment explanation
Indices: 8092711--8092750 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
8092701 TCTAAACTCG
*
8092711 ATTTAAATTTAAAATT
1 ATTTAAATTTAAAATA
8092727 ATTTAAATTTAAAATA
1 ATTTAAATTTAAAATA
8092743 ATTTAAAT
1 ATTTAAAT
8092751 AAAAAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
ATTTAAATTTAAAATA
Found at i:8093562 original size:20 final size:20
Alignment explanation
Indices: 8093537--8093589 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 20
8093527 TAATTTAATA
*
8093537 TTAAATAGTTTTTTAATATT
1 TTAAATAGTTTTTTAAAATT
*
8093557 TTAAATTA-TTACTTTAAAATT
1 TTAAA-TAGTT-TTTTAAAATT
8093578 TTAATATAGTTT
1 TTAA-ATAGTTT
8093590 AACATTAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 7
0.72 0.08 0.19
Matches are distributed among these distances:
20 7 0.27
21 16 0.62
22 3 0.12
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.57
Consensus pattern (20 bp):
TTAAATAGTTTTTTAAAATT
Found at i:8103596 original size:1 final size:1
Alignment explanation
Indices: 8103592--8103618 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
8103582 TTAAAAAGAG
8103592 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
8103619 ATCTAGGACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:8108912 original size:33 final size:33
Alignment explanation
Indices: 8108836--8108920 Score: 98
Period size: 33 Copynumber: 2.6 Consensus size: 33
8108826 GGTTGCTTCG
* *
8108836 ACCCTGGGTGAGGAAACTTCACTCATTGCCTCA
1 ACCCTAGGTGAGGAAACTTCACTCATGGCCTCA
* * * **
8108869 AGCCTAGGTGAGGAAGCTTCATTCATGGTTTCA
1 ACCCTAGGTGAGGAAACTTCACTCATGGCCTCA
*
8108902 ACCCTTGGTGAGGAAACTT
1 ACCCTAGGTGAGGAAACTT
8108921 TACCCATTTC
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (33 bp):
ACCCTAGGTGAGGAAACTTCACTCATGGCCTCA
Found at i:8109061 original size:33 final size:33
Alignment explanation
Indices: 8109024--8109134 Score: 188
Period size: 33 Copynumber: 3.4 Consensus size: 33
8109014 GAACTTCAGT
8109024 CATTGCCACAACCATCTATGAGGAAACATTCCC
1 CATTGCCACAACCATCTATGAGGAAACATTCCC
*
8109057 CATTGCCACAACCATGTATGAGGAAACATTCCC
1 CATTGCCACAACCATCTATGAGGAAACATTCCC
8109090 CATTGCCACAACCA-CATATGAGGAAACATTCCC
1 CATTGCCACAACCATC-TATGAGGAAACATTCCC
*
8109123 CATTGTCACAAC
1 CATTGCCACAAC
8109135 TGCAGGTGAG
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
33 74 1.00
ACGTcount: A:0.34, C:0.32, G:0.13, T:0.21
Consensus pattern (33 bp):
CATTGCCACAACCATCTATGAGGAAACATTCCC
Found at i:8109608 original size:33 final size:33
Alignment explanation
Indices: 8109571--8109659 Score: 117
Period size: 33 Copynumber: 2.7 Consensus size: 33
8109561 GGGCGAACAT
* **
8109571 ACTCCAGCCATTCCTGCTACCTTCAGTGAAGAA
1 ACTCCAGCCATTCCTGCAACCTTCAGCAAAGAA
* *
8109604 ACTCCGGCCATTCCTCCAACCTTCAGCAAAGAA
1 ACTCCAGCCATTCCTGCAACCTTCAGCAAAGAA
8109637 ACTCCTA-CCATTCCTGCAACCTT
1 ACTCC-AGCCATTCCTGCAACCTT
8109660 GGGTCATGAA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
33 48 1.00
ACGTcount: A:0.27, C:0.38, G:0.11, T:0.24
Consensus pattern (33 bp):
ACTCCAGCCATTCCTGCAACCTTCAGCAAAGAA
Found at i:8109671 original size:33 final size:32
Alignment explanation
Indices: 8109643--8109739 Score: 122
Period size: 33 Copynumber: 2.9 Consensus size: 32
8109633 AGAAACTCCT
* *
8109643 ACCATTCCTGCAACCTTGGGTCATGAAACTCAG
1 ACCATTCCTGCAACCTTGGGTGA-GAAACTAAG
* * *
8109676 ACCATTCCTACAACCATGGGTGAGCTAACTAAG
1 ACCATTCCTGCAACCTTGGGTGAG-AAACTAAG
8109709 ACCATTCCTGCAACCTTGGGTGAGGAAACTA
1 ACCATTCCTGCAACCTTGGGTGA-GAAACTA
8109740 CTACTGTTCC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
32 1 0.02
33 52 0.96
34 1 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (32 bp):
ACCATTCCTGCAACCTTGGGTGAGAAACTAAG
Found at i:8109804 original size:33 final size:35
Alignment explanation
Indices: 8109731--8109807 Score: 104
Period size: 36 Copynumber: 2.2 Consensus size: 35
8109721 ACCTTGGGTG
* **
8109731 AGGAAACTACTACTGTTCCCACAATCTTGGGCGAGG
1 AGGAAACTACTACTGTTCCCACAACCTT-GGCGACA
8109767 AGGAAACTACTACTGTTCCCACAACCTT-GC-ACA
1 AGGAAACTACTACTGTTCCCACAACCTTGGCGACA
8109800 AGGAAACT
1 AGGAAACT
8109808 TTGGCTAAGG
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
33 9 0.24
34 2 0.05
36 27 0.71
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.21
Consensus pattern (35 bp):
AGGAAACTACTACTGTTCCCACAACCTTGGCGACA
Found at i:8109869 original size:81 final size:81
Alignment explanation
Indices: 8109780--8109936 Score: 251
Period size: 81 Copynumber: 1.9 Consensus size: 81
8109770 AAACTACTAC
* *
8109780 TGTTCCCACAACCTTGCACAAGGAAACTTTGGCTAAGGAAACTCCAATTATTACCGCGACATTGG
1 TGTTCCCACAACCTTGCACAAGGAAACTTTGGCTAAGGAAACTCCAATTATTACCACAACATTGG
8109845 GCGAAGAAACTATGAA
66 GCGAAGAAACTATGAA
** * *
8109861 TGTTCCCACAACCTTGCATGAGGAAACTTTGGCTGAGGAAACTGCAATTATTACCACAACATTGG
1 TGTTCCCACAACCTTGCACAAGGAAACTTTGGCTAAGGAAACTCCAATTATTACCACAACATTGG
*
8109926 GTGAAGAAACT
66 GCGAAGAAACT
8109937 CCAACCAATC
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 69 1.00
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (81 bp):
TGTTCCCACAACCTTGCACAAGGAAACTTTGGCTAAGGAAACTCCAATTATTACCACAACATTGG
GCGAAGAAACTATGAA
Found at i:8109965 original size:33 final size:33
Alignment explanation
Indices: 8109928--8110006 Score: 131
Period size: 33 Copynumber: 2.4 Consensus size: 33
8109918 AACATTGGGT
8109928 GAAGAAACTCCAACCAATCCTACGACCTCGGGC
1 GAAGAAACTCCAACCAATCCTACGACCTCGGGC
* *
8109961 GAAGAAACTCCAACCAATTCTACGACCTTGGGC
1 GAAGAAACTCCAACCAATCCTACGACCTCGGGC
*
8109994 GAGGAAACTCCAA
1 GAAGAAACTCCAA
8110007 TTAATCCCAC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.35, C:0.32, G:0.19, T:0.14
Consensus pattern (33 bp):
GAAGAAACTCCAACCAATCCTACGACCTCGGGC
Found at i:8110022 original size:33 final size:33
Alignment explanation
Indices: 8109914--8110032 Score: 121
Period size: 33 Copynumber: 3.6 Consensus size: 33
8109904 GCAATTATTA
* * *
8109914 CCACAACATTGGGTGAAGAAACTCCAACCAATC
1 CCACAACCTTGGGCGAGGAAACTCCAACCAATC
* * * * *
8109947 CTACGACCTCGGGCGAAGAAACTCCAACCAATT
1 CCACAACCTTGGGCGAGGAAACTCCAACCAATC
* * **
8109980 CTACGACCTTGGGCGAGGAAACTCCAATTAATC
1 CCACAACCTTGGGCGAGGAAACTCCAACCAATC
*
8110013 CCACAACCTTGGGTGAGGAA
1 CCACAACCTTGGGCGAGGAA
8110033 GCTTCAACTG
Statistics
Matches: 72, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 72 1.00
ACGTcount: A:0.34, C:0.29, G:0.20, T:0.17
Consensus pattern (33 bp):
CCACAACCTTGGGCGAGGAAACTCCAACCAATC
Found at i:8112755 original size:3 final size:3
Alignment explanation
Indices: 8112747--8112783 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
8112737 TTGCCAATGC
8112747 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
8112784 TTATTATTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:8112788 original size:3 final size:3
Alignment explanation
Indices: 8112782--8112816 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
8112772 ATAATAATAA
8112782 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
8112817 GCTATAACCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:8122860 original size:13 final size:13
Alignment explanation
Indices: 8122842--8122866 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8122832 TTTTTTATGT
8122842 TTGTATTATATTA
1 TTGTATTATATTA
8122855 TTGTATTATATT
1 TTGTATTATATT
8122867 TAAAATTATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (13 bp):
TTGTATTATATTA
Found at i:8124731 original size:24 final size:22
Alignment explanation
Indices: 8124675--8124731 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 22
8124665 ATTTTTATAT
8124675 TTAAAAAAGTAAAAAAATTAAAA
1 TTAAAAAA-TAAAAAAATTAAAA
* *
8124698 TTGCACAAATAAAAAATATTAAAA
1 TT-AAAAAATAAAAAA-ATTAAAA
8124722 TGTAAAAAAT
1 T-TAAAAAAT
8124732 TTATTTAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
23 9 0.33
24 17 0.63
25 1 0.04
ACGTcount: A:0.67, C:0.04, G:0.05, T:0.25
Consensus pattern (22 bp):
TTAAAAAATAAAAAAATTAAAA
Found at i:8125250 original size:14 final size:15
Alignment explanation
Indices: 8125226--8125267 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
8125216 TATATTTGTT
* *
8125226 TATAGTTTATTTACT
1 TATAATTTATTTACG
*
8125241 TA-AATTTATTTAGG
1 TATAATTTATTTACG
8125255 TATAATTTATTTA
1 TATAATTTATTTA
8125268 TTATTTATGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.57
Consensus pattern (15 bp):
TATAATTTATTTACG
Found at i:8125286 original size:12 final size:12
Alignment explanation
Indices: 8125269--8125313 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
8125259 ATTTATTTAT
8125269 TATTTATGAATA
1 TATTTATGAATA
*
8125281 TATTTATTTATATA
1 TATTTA-TGA-ATA
*
8125295 TATTCATGAATA
1 TATTTATGAATA
8125307 TATTTAT
1 TATTTAT
8125314 TATTTATGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
12 15 0.56
13 4 0.15
14 8 0.30
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (12 bp):
TATTTATGAATA
Found at i:8125298 original size:26 final size:27
Alignment explanation
Indices: 8125259--8125314 Score: 87
Period size: 26 Copynumber: 2.1 Consensus size: 27
8125249 TTTAGGTATA
* *
8125259 ATTTATTTATTATTTATGAATATATTT
1 ATTTATATATTATTCATGAATATATTT
8125286 ATTTATATA-TATTCATGAATATATTT
1 ATTTATATATTATTCATGAATATATTT
8125312 ATT
1 ATT
8125315 ATTTATGAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 19 0.70
27 8 0.30
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.59
Consensus pattern (27 bp):
ATTTATATATTATTCATGAATATATTT
Found at i:8131118 original size:18 final size:19
Alignment explanation
Indices: 8131083--8131125 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
8131073 AATTTTAAAC
8131083 TAAAAAATAAAAGTTAAT-G
1 TAAAAAATAAAAG-TAATCG
8131102 TAAAAAATAAGAA-TAATCG
1 TAAAAAATAA-AAGTAATCG
8131121 TAAAA
1 TAAAA
8131126 TTAATATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.18
19 16 0.73
20 2 0.09
ACGTcount: A:0.65, C:0.02, G:0.09, T:0.23
Consensus pattern (19 bp):
TAAAAAATAAAAGTAATCG
Found at i:8136895 original size:29 final size:27
Alignment explanation
Indices: 8136853--8136908 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 27
8136843 CATCCAATTT
*
8136853 TTTTCAATCCTAAAAATATATAAAAAAAA
1 TTTTAAATCCTAAAAA-AT-TAAAAAAAA
*
8136882 TTTTAAATCTTAAAAAATTAAAAAAAA
1 TTTTAAATCCTAAAAAATTAAAAAAAA
8136909 AAAAGACAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 9 0.36
28 2 0.08
29 14 0.56
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (27 bp):
TTTTAAATCCTAAAAAATTAAAAAAAA
Found at i:8140415 original size:2 final size:2
Alignment explanation
Indices: 8140408--8140443 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
8140398 AACTGTCATG
8140408 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8140444 GAGTTTGTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8140545 original size:18 final size:18
Alignment explanation
Indices: 8140512--8140556 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
8140502 ATGATATCTC
* *
8140512 ATGAGAAATTGAAAAATT
1 ATGAAAAATTGAAAAATA
8140530 AT-AAAAATTAGAAAAATA
1 ATGAAAAATT-GAAAAATA
8140548 ATGAAAAAT
1 ATGAAAAAT
8140557 GACAGAACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 6 0.26
18 11 0.48
19 6 0.26
ACGTcount: A:0.64, C:0.00, G:0.11, T:0.24
Consensus pattern (18 bp):
ATGAAAAATTGAAAAATA
Found at i:8142800 original size:12 final size:11
Alignment explanation
Indices: 8142767--8142798 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
8142757 ATATTTTGCT
*
8142767 TAAAAAAAGAG
1 TAAAAAAAAAG
8142778 TAAAAAAAAAG
1 TAAAAAAAAAG
8142789 TAAAAAAAAA
1 TAAAAAAAAA
8142799 AGATGACTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.81, C:0.00, G:0.09, T:0.09
Consensus pattern (11 bp):
TAAAAAAAAAG
Found at i:8143716 original size:49 final size:49
Alignment explanation
Indices: 8143551--8143932 Score: 525
Period size: 49 Copynumber: 8.0 Consensus size: 49
8143541 AATTTGAAAA
* *
8143551 CAAGAT-AAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTT-
1 CAAGATGAGAATTTTAAAGTCGTTGAGCCTCTGCTGAGAGGAGCTTTTC
** * * *
8143598 --TTA-GAGAATTTTAAAATTGTTGAGCCTCTGCTGAGAGGAGCTTTTT
1 CAAGATGAGAATTTTAAAGTCGTTGAGCCTCTGCTGAGAGGAGCTTTTC
* *
8143644 C---ATGAG-ATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCTTTTC
1 CAAGATGAGAATTTTAAAGTCGTTGAGCCTCTGCTGAGAGGAGCTTTTC
*
8143689 CAAGATGAGAATTTTAAAGTCGTTGAGCCTCTGCTGAGAAGAGCTTTTC
1 CAAGATGAGAATTTTAAAGTCGTTGAGCCTCTGCTGAGAGGAGCTTTTC
*
8143738 CAAGATGAG-ATTTTAAAGTCGTTGAGCCTCTACTGAGAGGAGCTTTTC
1 CAAGATGAGAATTTTAAAGTCGTTGAGCCTCTGCTGAGAGGAGCTTTTC
* * *
8143786 CAAGATGAGAATTTTAAAGTCATTGAGCCTCTGCTGAAATGAGCTTTTC
1 CAAGATGAGAATTTTAAAGTCGTTGAGCCTCTGCTGAGAGGAGCTTTTC
*
8143835 CAAGATGAGAATTTTAAAGTCGTTGAGCCTCTGCTGAGAGGAGCCTTTC
1 CAAGATGAGAATTTTAAAGTCGTTGAGCCTCTGCTGAGAGGAGCTTTTC
* *
8143884 CAAGATGAG-ATTTTAAAGTTGTTGAGCCTCTGCTAAGAGGAGCCTTTTC
1 CAAGATGAGAATTTTAAAGTCGTTGAGCCTCTGCTGAGAGGAG-CTTTTC
8143933 ATGAGATTTT
Statistics
Matches: 302, Mismatches: 23, Indels: 18
0.88 0.07 0.05
Matches are distributed among these distances:
45 78 0.26
46 3 0.01
48 82 0.27
49 139 0.46
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.33
Consensus pattern (49 bp):
CAAGATGAGAATTTTAAAGTCGTTGAGCCTCTGCTGAGAGGAGCTTTTC
Found at i:8143780 original size:97 final size:97
Alignment explanation
Indices: 8143551--8143946 Score: 521
Period size: 97 Copynumber: 4.2 Consensus size: 97
8143541 AATTTGAAAA
* * * * **
8143551 CAAGATAAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTT---TTA-GAGAATTTTAA
1 CAAGATGAGATTTTAAAGTCGTTGAGCCTCTACTGAGAGGAGCTTTTCCAAGATGAGAATTTTAA
* * * *
8143612 AATTGTTGAGCCTCTGCTGAGAGGAGCTTTTT
66 AGTCGTTGAGCCTCTGCTGAGAAGAGCTTTTC
*
8143644 C---ATGAGATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCTTTTCCAAGATGAGAATTTTAA
1 CAAGATGAGATTTTAAAGTCGTTGAGCCTCTACTGAGAGGAGCTTTTCCAAGATGAGAATTTTAA
8143706 AGTCGTTGAGCCTCTGCTGAGAAGAGCTTTTC
66 AGTCGTTGAGCCTCTGCTGAGAAGAGCTTTTC
8143738 CAAGATGAGATTTTAAAGTCGTTGAGCCTCTACTGAGAGGAGCTTTTCCAAGATGAGAATTTTAA
1 CAAGATGAGATTTTAAAGTCGTTGAGCCTCTACTGAGAGGAGCTTTTCCAAGATGAGAATTTTAA
*
8143803 AGTCATTGAGCCTCTGCTGA-AATGAGCTTTTC
66 AGTCGTTGAGCCTCTGCTGAGAA-GAGCTTTTC
* *
8143835 CAAGATGAGAATTTTAAAGTCGTTGAGCCTCTGCTGAGAGGAGCCTTTCCAAGATGAG-ATTTTA
1 CAAGATGAG-ATTTTAAAGTCGTTGAGCCTCTACTGAGAGGAGCTTTTCCAAGATGAGAATTTTA
* * *
8143899 AAGTTGTTGAGCCTCTGCTAAGAGGAGCCTTTT-
65 AAGTCGTTGAGCCTCTGCTGAGAAGAG-CTTTTC
8143932 C---ATGAGATTTTAAAG
1 CAAGATGAGATTTTAAAG
8143947 ATTTTAAAGA
Statistics
Matches: 275, Mismatches: 17, Indels: 22
0.88 0.05 0.07
Matches are distributed among these distances:
90 40 0.15
93 11 0.04
94 45 0.16
96 2 0.01
97 125 0.45
98 52 0.19
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (97 bp):
CAAGATGAGATTTTAAAGTCGTTGAGCCTCTACTGAGAGGAGCTTTTCCAAGATGAGAATTTTAA
AGTCGTTGAGCCTCTGCTGAGAAGAGCTTTTC
Found at i:8143842 original size:146 final size:142
Alignment explanation
Indices: 8143551--8143946 Score: 568
Period size: 146 Copynumber: 2.8 Consensus size: 142
8143541 AATTTGAAAA
* * **
8143551 CAAGAT-AAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTT-TTAGA-GA-ATTTTAA
1 CAAGATGAGAATTTTAAAGTCGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAGATTTTAA
* * **
8143612 AATTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCATGAGATTTTAAAGTTGTTGAGCCTCTACTGA
66 AGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCATGAGATTTTAAAGTCATTGAGCCTCTACTGA
*
8143677 GAGGAGCTTTTC
131 AAGGAGCTTTTC
*
8143689 CAAGATGAGAATTTTAAAGTCGTTGAGCCTCTGCTGAGAAGAGCTTTTCCAAGATGAGATTTTAA
1 CAAGATGAGAATTTTAAAGTCGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAGATTTTAA
* * *
8143754 AGTCGTTGAGCCTCTACTGAGAGGAGCTTTTCCAAGATGAGAATTTTAAAGTCATTGAGCCTCTG
66 AGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCC---ATGAG-ATTTTAAAGTCATTGAGCCTCTA
*
8143819 CTGAAATGAGCTTTTC
127 CTGAAAGGAGCTTTTC
*
8143835 CAAGATGAGAATTTTAAAGTCGTTGAGCCTCTGCTGAGAGGAGCCTTTCCAAGATGAGATTTTAA
1 CAAGATGAGAATTTTAAAGTCGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAGATTTTAA
*
8143900 AGTTGTTGAGCCTCTGCTAAGAGGAGCCTTTT-CATGAGATTTTAAAG
66 AGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTCCATGAGATTTTAAAG
8143947 ATTTTAAAGA
Statistics
Matches: 230, Mismatches: 19, Indels: 14
0.87 0.07 0.05
Matches are distributed among these distances:
138 6 0.03
139 38 0.17
140 3 0.01
141 2 0.01
142 45 0.20
143 5 0.02
145 5 0.02
146 121 0.53
147 5 0.02
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (142 bp):
CAAGATGAGAATTTTAAAGTCGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAGATTTTAA
AGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCATGAGATTTTAAAGTCATTGAGCCTCTACTGA
AAGGAGCTTTTC
Found at i:8143950 original size:9 final size:9
Alignment explanation
Indices: 8143936--8143964 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
8143926 CCTTTTCATG
8143936 AGATTTTAA
1 AGATTTTAA
8143945 AGATTTTAA
1 AGATTTTAA
8143954 AGATTTTAA
1 AGATTTTAA
8143963 AG
1 AG
8143965 TTGTTGAGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (9 bp):
AGATTTTAA
Found at i:8143959 original size:63 final size:62
Alignment explanation
Indices: 8143891--8144008 Score: 209
Period size: 63 Copynumber: 1.9 Consensus size: 62
8143881 TTCCAAGATG
*
8143891 AGATTTTAAAGTTGTTGAGCCTCTGCTAAGAGGAGCCTTTTCATGAGATTTTAAAGATTTTAA
1 AGATTTTAAAGTTGTTGAGCCTCTGCTAAGAGGAG-CTTTTCATGAAATTTTAAAGATTTTAA
*
8143954 AGATTTTAAAGTTGTTGAGCCTCTGCTAAGAGGCGCTTTTCATGAAATTTTAAAG
1 AGATTTTAAAGTTGTTGAGCCTCTGCTAAGAGGAGCTTTTCATGAAATTTTAAAG
8144009 TCGTTGAGCC
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
62 19 0.36
63 34 0.64
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.37
Consensus pattern (62 bp):
AGATTTTAAAGTTGTTGAGCCTCTGCTAAGAGGAGCTTTTCATGAAATTTTAAAGATTTTAA
Found at i:8144035 original size:107 final size:109
Alignment explanation
Indices: 8143845--8144053 Score: 314
Period size: 107 Copynumber: 1.9 Consensus size: 109
8143835 CAAGATGAGA
* * *
8143845 ATTTTAAAGTCGTTGAGCCTCTGCTGAGAGGAGCCTTTCCAAGATGAGATTTTAAAGTTGTTGAG
1 ATTTTAAAGTCGTTGAGCCTCTGCTAAGAGGAGCCTTTCC-A-ATGAAATTTTAAAGTCGTTGAG
*
8143910 CCTCTGCTAAGAGGAGCCTTTTCATGAGATTTTAAAGATTTTAAAG
64 CCTCTGCTAAGAGAAGCCTTTTCATGAGATTTTAAAGATTTTAAAG
* * *
8143956 ATTTTAAAGTTGTTGAGCCTCTGCTAAGAGGCG-CTTTTC-ATGAAATTTTAAAGTCGTTGAGCC
1 ATTTTAAAGTCGTTGAGCCTCTGCTAAGAGGAGCCTTTCCAATGAAATTTTAAAGTCGTTGAGCC
*
8144019 TCTGCTGAGAGAAGCCTTTTCATGAGATTTTAAAG
66 TCTGCTAAGAGAAGCCTTTTCATGAGATTTTAAAG
8144054 TTGTTGAGCC
Statistics
Matches: 90, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 55 0.61
110 5 0.06
111 30 0.33
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (109 bp):
ATTTTAAAGTCGTTGAGCCTCTGCTAAGAGGAGCCTTTCCAATGAAATTTTAAAGTCGTTGAGCC
TCTGCTAAGAGAAGCCTTTTCATGAGATTTTAAAGATTTTAAAG
Found at i:8144053 original size:45 final size:45
Alignment explanation
Indices: 8143954--8144083 Score: 185
Period size: 45 Copynumber: 2.9 Consensus size: 45
8143944 AAGATTTTAA
*
8143954 AGATTTTAAAGTTGTTGAGCCTCTGCT-A-AGAGGCGCTTTTCATG
1 AGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGC-CTTTTCATG
* *
8143998 AAATTTTAAAGTCGTTGAGCCTCTGCTGAGAGAAGCCTTTTCATG
1 AGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCCTTTTCATG
*
8144043 AGATTTTAAAGTTGTTGAGCCTCTGTTGAGA-AGAGCCTTTT
1 AGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGA-AGCCTTTT
8144084 AAACTTTCAA
Statistics
Matches: 77, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
44 26 0.34
45 46 0.60
46 5 0.06
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.36
Consensus pattern (45 bp):
AGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCCTTTTCATG
Found at i:8144318 original size:15 final size:15
Alignment explanation
Indices: 8144298--8144381 Score: 59
Period size: 15 Copynumber: 5.7 Consensus size: 15
8144288 ATATTATTTA
8144298 TTTTTCTTTCTT-TCT
1 TTTTTC-TTCTTCTCT
8144313 TTTTTCTTCTTCTCT
1 TTTTTCTTCTTCTCT
*
8144328 TTCTT-TTCTTCTCGT
1 TTTTTCTTCTTCTC-T
* * * *
8144343 TTCTGCGT-TTGTC-
1 TTTTTCTTCTTCTCT
* *
8144356 TTCTTCTTCTTTTCT
1 TTTTTCTTCTTCTCT
8144371 TTTTTCTTCTT
1 TTTTTCTTCTT
8144382 TTTCATCCTT
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
13 6 0.11
14 17 0.30
15 32 0.57
16 1 0.02
ACGTcount: A:0.00, C:0.24, G:0.05, T:0.71
Consensus pattern (15 bp):
TTTTTCTTCTTCTCT
Found at i:8146320 original size:193 final size:191
Alignment explanation
Indices: 8145981--8146364 Score: 608
Period size: 193 Copynumber: 2.0 Consensus size: 191
8145971 GCATTGCATG
* * ** * *
8145981 CATGATATTTTTTTACGAAAAATAAATTCGAGCCTCTGAGGATGAGATTCTAAGGTATTCCGAGA
1 CATGACATTTTCTTACGAAAAATAAATTCGAGCCTCCAAAGATGAGATTCTAAAGTATTCCGAGA
* *
8146046 AGCGATGCCTAAGAAATCTTTAGGTGAGAAAAAGTTCTTTTAATGTTACCAACGTACTGGAACAT
66 AGAGATGCCTAAGAAATCTCTAGGTGAGAAAAAGTTCTTTTAATGTTACCAACGTACTGGAACAT
*
8146111 TTGAAGAATTATTTCAATAAAAATGTTTTAATTTATTTTTCTCGAGAAT-ATTTTCTTTTAA
131 TTGAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTTCTCGAGAATAATTTT-TTTTAA
8146172 CATGACATTTTCTTACGAAAAATAAATTCGAGCCTCCAAAGATGAGATTCTAAAAGTATTCCGAG
1 CATGACATTTTCTTACGAAAAATAAATTCGAGCCTCCAAAGATGAGATTCT-AAAGTATTCCGAG
* * *
8146237 CAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAAAGTTCTTTTAATGTTACTAACGTACTGGAAC
65 AAGAGATGC-CTAAGAAATCTCTAGGTGAGAAAAAGTTCTTTTAATGTTACCAACGTACTGGAAC
* *
8146302 ATTTTAAGAATTATTTCAATAAAAAGGTTTTGATTTATTTTTCTCGAGAATAATTTTTTTTAA
129 ATTTGAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTTCTCGAGAATAATTTTTTTTAA
8146365 TAAATAAAAA
Statistics
Matches: 176, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
191 46 0.26
192 19 0.11
193 106 0.60
194 5 0.03
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (191 bp):
CATGACATTTTCTTACGAAAAATAAATTCGAGCCTCCAAAGATGAGATTCTAAAGTATTCCGAGA
AGAGATGCCTAAGAAATCTCTAGGTGAGAAAAAGTTCTTTTAATGTTACCAACGTACTGGAACAT
TTGAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTTCTCGAGAATAATTTTTTTTAA
Found at i:8150203 original size:236 final size:232
Alignment explanation
Indices: 8149464--8150238 Score: 649
Period size: 236 Copynumber: 3.3 Consensus size: 232
8149454 TAGTTATATG
* * * * ** *
8149464 AACAGTAATTAATTAAAATTTTATATTACCAACTTAATTATTTACATTATGTTAATATTTTCATA
1 AACAATAATTAATTAAAATTTTA-ATTATCTACTTAATTATTTACGTTATAATAATA-TTTCTTA
* * * * * * * * * ** * * ** *
8149529 CAATTATTCTTATATTGCAA-TAAGTTTAGAATTGTCATAATTCTTTTTTA-ATGTGTTATGATA
64 CAATTGTTCTTACATT-TAATTACGTTTAAAATTATTATAACTATTTCATAGTTATGTTACAACA
* * *
8149592 -TTTCTTACTCATTTTATGCCAAATGATATGAATTTTACACTTTTTCTCACTTGTTCA-AGTTTC
128 CTTT-TTACTCATTTTATGCCAAATGATATGAATTTT--ACGTTTTCTCACTTGTTTACA-TTAC
*
8149655 TTATTTGATTTTTAAATTTTA-TCTATTTTTCTTATATATTTACAAA
189 TTATTTG-TTTTTAATTTTTAGT-TATTTTTCTTATATATTTA-AAA
* * * * * * *
8149701 AATAATAATTAATTAAAATTTT-A-TGT-TACTTACTTGTTTACGTTGTAATTATATCTTCTTAT
1 AACAATAATTAATTAAAATTTTAATTATCTACTTAATTATTTACGTTATAATAATAT-TTCTTAC
* * * * * * **
8149763 AATTGTTCTTACATTTCATTACGTTTAGAATTGTTATACCTATTTCTTAGTTTGTGTTATGACAC
65 AATTGTTCTTACATTTAATTACGTTTAAAATTATTATAACTATTTCATAG-TTATGTTACAACAC
* * * * * *
8149828 TTTTTACTTA-TTTACGTCAAATGGTACGAATTTTATGATTTTTCTCACTTGTTTACATTACTTA
129 TTTTTACTCATTTTATGCCAAATGATATGAATTTTACG--TTTTCTCACTTGTTTACATTACTTA
* * *
8149892 TTATTATTTTTAAATTTTTAGCTATTTTGCTTATATA-TTAACAA
192 -T-TTGTTTTT-AATTTTTAGTTATTTTTCTTATATATTTAA-AA
* * * * *
8149936 AACAATAATTAATTAAAACTTCATATTATCTACTTAATTATTTACATTACAATAATACTTTTTTA
1 AACAATAATTAATTAAAATTTTA-ATTATCTACTTAATTATTTACGTTATAATAATA-TTTCTTA
* *
8150001 CAATTGTTCTTACTTTTAATTACGTTTAAAATTATTATAACTTTTTCATAG-TATGTTACAACA-
64 CAATTGTTCTTACATTTAATTACGTTTAAAATTATTATAACTATTTCATAGTTATGTTACAACAC
* * *
8150064 TTATTTACCCATTTTATAG-CAAATCATATGAATTTTACGTTTTCATCACTTATTTACATTACTT
129 TT-TTTACTCATTTTAT-GCCAAATGATATGAATTTTACGTTTTC-TCACTTGTTTACATTACTT
8150128 ATTTGTTTTTCAATTTTTAGTTATTTTTCTTATATATTTATAAA
191 ATTTGTTTTT-AATTTTTAGTTATTTTTCTTATATATTTA-AAA
* *
8150172 AACAATAATCAATTAAAATTTTAAGTTATCTACTTAATTATTTATGTTATAATAATAATTTCTTA
1 AACAATAATTAATTAAAATTTTAA-TTATCTACTTAATTATTTACGTTATAATAAT-ATTTCTTA
8150237 CA
64 CA
8150239 GTTATTTTAA
Statistics
Matches: 432, Mismatches: 80, Indels: 53
0.76 0.14 0.09
Matches are distributed among these distances:
232 3 0.01
233 61 0.14
234 43 0.10
235 80 0.19
236 95 0.22
237 57 0.13
238 22 0.05
239 70 0.16
240 1 0.00
ACGTcount: A:0.33, C:0.11, G:0.06, T:0.50
Consensus pattern (232 bp):
AACAATAATTAATTAAAATTTTAATTATCTACTTAATTATTTACGTTATAATAATATTTCTTACA
ATTGTTCTTACATTTAATTACGTTTAAAATTATTATAACTATTTCATAGTTATGTTACAACACTT
TTTACTCATTTTATGCCAAATGATATGAATTTTACGTTTTCTCACTTGTTTACATTACTTATTTG
TTTTTAATTTTTAGTTATTTTTCTTATATATTTAAAA
Found at i:8151127 original size:288 final size:286
Alignment explanation
Indices: 8150638--8151208 Score: 664
Period size: 288 Copynumber: 2.0 Consensus size: 286
8150628 TTAATTAAAA
* *
8150638 TTTTACATTATCATCATAATTATTTATGTTACAATAATATATTTTTACTGTTATTCTTACTTTTA
1 TTTTACATTACCATCATAATTATTTATATTACAATAATATATTTTTACTGTTATTCTTACTTTTA
* * * * * * * * *
8150703 TCAAATTTAGAATTGTTATAGCTTTTTTTTAGTGTGTTACGACACTTCTAACCCATTTTATTCCA
66 TCAAATTTAAAATTGTCATAACTCTATCTTAGTGTGTTACGACACCTCTAACCCATTTCATGCCA
* ** *
8150768 AATGATATTAATTTTACGTTACTTCTCATTTGTTTTTTTATCAATTTGTTTTTTAATTTTAGCTA
131 AATGATACTAATTTTAC--TACTTCTCATTTGTTTCGTTATCAATTTATTTTTTAATTTTAGCTA
* * *
8150833 TTTTTCTTTTATATTTACAGGAATAATAAATAATTAAAATTTTACGTTATCAACATAATTA-TTA
194 TTTTTCTTATATATTTACAGGAATAATAAATAATTAAAATTTAAAGTTATCAACATAATTATTTA
* * *
8150897 CCTTTGCAATAATATTTTTTTATGATTAT
259 -CTTTACAATAATATCTTCTTATGATTAT
* * *
8150926 TTTTACATTGCCATCATAATTATTTATATTATAATAATATATTTTTA-TGATTGTTCTTACTTTT
1 TTTTACATTACCATCATAATTATTTATATTACAATAATATATTTTTACTG-TTATTCTTACTTTT
* * * ** * **
8150990 GATTACATTTAAAATTGTCATAACTCTATCTTAGTGTTTTACGATTCCTCTTACTTATTTCATGC
65 -ATCAAATTTAAAATTGTCATAACTCTATCTTAGTGTGTTACGACACCTCTAACCCATTTCATGC
* * *
8151055 CAAATGATACTAATTTTA-TATTTCTTACTTT-TTTACGTTATTAATTTATTTTTTAATTTTTAG
129 CAAATGATACTAATTTTACTACTTCTCA-TTTGTTT-CGTTATCAATTTATTTTTTAA-TTTTAG
* * ** * * *
8151118 TTTTTTTTCTTATATATTTGTAGGAATAATAATTAATTAAAATTTAAAGTTGTTAACATAATTAT
191 CTATTTTTCTTATATATTTACAGGAATAATAAATAATTAAAATTTAAAGTTATCAACATAATTAT
8151183 TTACTTTACAATAATATCTTCTTATG
256 TTACTTTACAATAATATCTTCTTATG
8151209 GTAGTTTATT
Statistics
Matches: 235, Mismatches: 42, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
286 10 0.04
287 22 0.09
288 136 0.58
289 67 0.29
ACGTcount: A:0.30, C:0.11, G:0.06, T:0.52
Consensus pattern (286 bp):
TTTTACATTACCATCATAATTATTTATATTACAATAATATATTTTTACTGTTATTCTTACTTTTA
TCAAATTTAAAATTGTCATAACTCTATCTTAGTGTGTTACGACACCTCTAACCCATTTCATGCCA
AATGATACTAATTTTACTACTTCTCATTTGTTTCGTTATCAATTTATTTTTTAATTTTAGCTATT
TTTCTTATATATTTACAGGAATAATAAATAATTAAAATTTAAAGTTATCAACATAATTATTTACT
TTACAATAATATCTTCTTATGATTAT
Found at i:8151470 original size:229 final size:228
Alignment explanation
Indices: 8151038--8151475 Score: 492
Period size: 229 Copynumber: 1.9 Consensus size: 228
8151028 TTACGATTCC
* * * * *
8151038 TCTTACTTATTTCATGCCAAATGATACTAATTTTATATTTCTTACTTTTTTACGTTATTAATTTA
1 TCTTACCTATTTCAGGCCAAATGATACTAATTTTATATTTCTCACTTGTTTACGTTATCAATTTA
* * * ** *
8151103 TTTTTTAATTTTTAGTTTTTTTTCTTATATATTTGTAGGAATAATAATTAATTAAAATTTAAAGT
66 TTTTTTAATTTCTAGTTTTTTATCTTAAATATTTACAGGAACAATAATTAATTAAAATTTAAAGT
* * * * *
8151168 TGTTAACATAATTATTTACTTTACAATAATATCTTCTTATGGTAGTTTATTTTTTCATTACATTT
131 TGTCAACATAATTATTTACATTACAATAATA-CTTATTATGGTAGTTTATTTTTCCATTACACTT
8151233 AAAATTATCATAACTCTTAATATGTTCCTACACT
195 AAAATTATCATAACTCTTAATATGTTCCTACACT
* * * *
8151267 TCTTACCTATTTTAGGCCAAATGATATTAATTTTACATTTGTTCTCACTTGTTTACTTTATCAAT
1 TCTTACCTATTTCAGGCCAAATGATACTAATTTT--ATAT-TTCTCACTTGTTTACGTTATCAAT
* *
8151332 TTATTTTTTAATTTCTA-TCTATTTTAT-TTAAATATTTACA-TAACAATAATTAATTAAAGTTT
63 TTATTTTTTAATTTCTAGT-T-TTTTATCTTAAATATTTACAGGAACAATAATTAATTAAAATTT
* * * * *
8151394 -ATGTTGTCAATATAATTATTTACATTATAATAATA-TTATTGTGGTTGTTT-TTACTTTCCATT
126 AAAGTTGTCAACATAATTATTTACATTACAATAATACTTATTATGGTAGTTTATT--TTTCCATT
** *
8151456 ATGCTTATAATTATCATAAC
189 ACACTTAAAATTATCATAAC
8151476 ATTTTTTAGT
Statistics
Matches: 172, Mismatches: 30, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
227 2 0.01
228 12 0.07
229 53 0.31
230 30 0.17
231 23 0.13
232 47 0.27
233 5 0.03
ACGTcount: A:0.32, C:0.11, G:0.06, T:0.52
Consensus pattern (228 bp):
TCTTACCTATTTCAGGCCAAATGATACTAATTTTATATTTCTCACTTGTTTACGTTATCAATTTA
TTTTTTAATTTCTAGTTTTTTATCTTAAATATTTACAGGAACAATAATTAATTAAAATTTAAAGT
TGTCAACATAATTATTTACATTACAATAATACTTATTATGGTAGTTTATTTTTCCATTACACTTA
AAATTATCATAACTCTTAATATGTTCCTACACT
Found at i:8151867 original size:21 final size:21
Alignment explanation
Indices: 8151821--8151867 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
8151811 TTAGTTAAAA
*
8151821 TTTTACATTGTCAATATAATT
1 TTTTACATTATCAATATAATT
* *
8151842 ATTTACATTAT-AATAATATTT
1 TTTTACATTATCAAT-ATAATT
8151863 TTTTA
1 TTTTA
8151868 TGATTTTTCT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.36, C:0.06, G:0.02, T:0.55
Consensus pattern (21 bp):
TTTTACATTATCAATATAATT
Found at i:8152832 original size:11 final size:11
Alignment explanation
Indices: 8152793--8152835 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
8152783 AATTTTATAT
8152793 TAATATTTTT-
1 TAATATTTTTA
8152803 TAAT-TTCTTTA
1 TAATATT-TTTA
8152814 TAATTATTTTTA
1 TAA-TATTTTTA
8152826 TAATATTTTT
1 TAATATTTTT
8152836 TAGCTATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
9 2 0.07
10 7 0.24
11 10 0.34
12 8 0.28
13 2 0.07
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (11 bp):
TAATATTTTTA
Found at i:8154474 original size:2 final size:2
Alignment explanation
Indices: 8154467--8154511 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
8154457 ATAGGCCTTG
*
8154467 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8154509 AT A
1 AT A
8154512 AGTAAAGTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8157549 original size:45 final size:45
Alignment explanation
Indices: 8157485--8157598 Score: 228
Period size: 45 Copynumber: 2.5 Consensus size: 45
8157475 TAAAATATTA
8157485 AATATTAAAATAAAATTTACATATATATATTTATATAATTATAAT
1 AATATTAAAATAAAATTTACATATATATATTTATATAATTATAAT
8157530 AATATTAAAATAAAATTTACATATATATATTTATATAATTATAAT
1 AATATTAAAATAAAATTTACATATATATATTTATATAATTATAAT
8157575 AATATTAAAATAAAATTTACATAT
1 AATATTAAAATAAAATTTACATAT
8157599 CTCTTACCAT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 69 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (45 bp):
AATATTAAAATAAAATTTACATATATATATTTATATAATTATAAT
Found at i:8168055 original size:9 final size:10
Alignment explanation
Indices: 8168002--8168057 Score: 60
Period size: 10 Copynumber: 5.5 Consensus size: 10
8167992 TGAATCGGAT
*
8168002 AAGAAAGAAG
1 AAGAAAGAAA
*
8168012 AAGAAGGAAA
1 AAGAAAGAAA
*
8168022 AAGAAATGAGGA
1 AAGAAA-GA-AA
8168034 AAGAAAGAAA
1 AAGAAAGAAA
8168044 AAGAAA-AAA
1 AAGAAAGAAA
8168053 AAGAA
1 AAGAA
8168058 GAAGAAAAAC
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
9 8 0.21
10 20 0.51
11 4 0.10
12 7 0.18
ACGTcount: A:0.73, C:0.00, G:0.25, T:0.02
Consensus pattern (10 bp):
AAGAAAGAAA
Found at i:8169185 original size:217 final size:219
Alignment explanation
Indices: 8168745--8169291 Score: 571
Period size: 217 Copynumber: 2.5 Consensus size: 219
8168735 ACGTAATGAT
* * * * *
8168745 AACGTAATGAAAAGTAACAATAAATATAAAAAGATATTATTTTAACAAAAATAATTAAGTTGGTA
1 AACGTAATGAAAAGTAACAATAAGTGTAAAAAGATATTATTATAACATAAATAATTAAGTTGATA
* **
8168810 ATATAAAATAAA-TATTATTACAAATAAAAAATAATTTTAAACCAAAAAATAAAAGTTAATGTAA
66 ATATAAAA-AAATTATTATTATAAATAAAAAATAATCCTAAACCAAAAAATAAAAGTTAATGTAA
* * * * * *
8168874 AAAGATGAGAATAATCGTAAAATTAGTATTATTTAATGTAAAATGGTTACAAGTATTGTTACATT
130 AAAGATAAAAATAATCATAAAATTAGTATTATTTAACGTAAAATGGTTAAAAGTATTGTAACATT
* * *
8168939 TTAATAAAATATTGTGATAATTCTA
195 TTAAGAAAATATTATAATAATTCTA
* * * *
8168964 AACGTAATAAAAAAG-AACAATAAGTGTAAAAA-ATATTATTAAAACATAGATAATTAAATTGAT
1 AACGTAAT-GAAAAGTAACAATAAGTGTAAAAAGATATTATTATAACATAAATAATTAAGTTGAT
* * * ***
8169027 AATGTAAAAAAATTAGTATTATAAATAAAAAAT-ATCCTATACCAAAAAATAGGTGTTAAAT-TA
65 AATATAAAAAAATTATTATTATAAATAAAAAATAATCCTAAACCAAAAAATAAAAGTT-AATGTA
* * *
8169090 AAAAGATAAAAATAATCATAAAATT-G-ATTTTTTTAGCGT-AAATGGGTTAAAAGTGTTGTAAC
129 AAAAGATAAAAATAATCATAAAATTAGTA-TTATTTAACGTAAAAT-GGTTAAAAGTATTGTAAC
8169152 ACTTTTAAGAAAA-AGTTATAATAA-TCTTA
192 A-TTTTAAGAAAATA-TTATAATAATTC-TA
* * * * * *
8169181 AACGTAATGAAAGGTAATAATAAGTGTAAAAATATATTGTTATAATATAAATAATTAAGTTGACA
1 AACGTAATGAAAAGTAACAATAAGTGTAAAAAGATATTATTATAACATAAATAATTAAGTTGATA
* *
8169246 ACA-AAAAAAATTTTATTATTATAAAT-AAAAATAATTCTAAA-CAAAA
66 ATATAAAAAAA--TTATTATTATAAATAAAAAATAATCCTAAACCAAAA
8169292 GAAAAGTGTT
Statistics
Matches: 271, Mismatches: 44, Indels: 27
0.79 0.13 0.08
Matches are distributed among these distances:
215 5 0.02
216 32 0.12
217 95 0.35
218 92 0.34
219 42 0.15
220 5 0.02
ACGTcount: A:0.53, C:0.05, G:0.10, T:0.32
Consensus pattern (219 bp):
AACGTAATGAAAAGTAACAATAAGTGTAAAAAGATATTATTATAACATAAATAATTAAGTTGATA
ATATAAAAAAATTATTATTATAAATAAAAAATAATCCTAAACCAAAAAATAAAAGTTAATGTAAA
AAGATAAAAATAATCATAAAATTAGTATTATTTAACGTAAAATGGTTAAAAGTATTGTAACATTT
TAAGAAAATATTATAATAATTCTA
Found at i:8171286 original size:16 final size:15
Alignment explanation
Indices: 8171261--8171290 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
8171251 AAAAAATTGA
8171261 TATTATATATAAATT
1 TATTATATATAAATT
8171276 TATTGATATATAAAT
1 TATT-ATATATAAAT
8171291 GTACTATCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (15 bp):
TATTATATATAAATT
Found at i:8171489 original size:30 final size:30
Alignment explanation
Indices: 8171455--8171513 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
8171445 CCATTCAAGT
*
8171455 TTATCAATCATTGAATCAATAGCTTAATTA
1 TTATCAATCATTGAATAAATAGCTTAATTA
8171485 TTATCAATCATTGAATAAATAGCTTAATT
1 TTATCAATCATTGAATAAATAGCTTAATT
8171514 GTTAGATCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.41, C:0.12, G:0.07, T:0.41
Consensus pattern (30 bp):
TTATCAATCATTGAATAAATAGCTTAATTA
Found at i:8172271 original size:16 final size:15
Alignment explanation
Indices: 8172246--8172282 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
8172236 AAAAAATTGA
*
8172246 TATTATATATAAATT
1 TATTATATATAAATG
8172261 TATTGATATATAAATG
1 TATT-ATATATAAATG
8172277 TATTAT
1 TATTAT
8172283 CAGCTATTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (15 bp):
TATTATATATAAATG
Found at i:8172474 original size:30 final size:31
Alignment explanation
Indices: 8172440--8172519 Score: 121
Period size: 31 Copynumber: 2.7 Consensus size: 31
8172430 TCATTCAAGT
8172440 TTATCAATCATTT-AATCAATAGCTTAATTG
1 TTATCAATCATTTAAATCAATAGCTTAATTG
8172470 TTATCAATCATTTAAATCAATAGCTTAATTG
1 TTATCAATCATTTAAATCAATAGCTTAATTG
* *
8172501 TTA--GATCATTTGAATCAAT
1 TTATCAATCATTTAAATCAAT
8172520 TAATATTGTT
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
29 14 0.30
30 13 0.28
31 20 0.43
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.42
Consensus pattern (31 bp):
TTATCAATCATTTAAATCAATAGCTTAATTG
Found at i:8172535 original size:986 final size:988
Alignment explanation
Indices: 8170493--8173190 Score: 4556
Period size: 986 Copynumber: 2.7 Consensus size: 988
8170483 TCATTCAAGT
8170493 TTATCAATCATTGAATCAATAGCTTAATTGTTAGATCATTTGAATCAATTAATATTGTTGAATTA
1 TTATCAATCATTGAATCAATAGCTTAATTGTTAGATCATTTGAATCAATTAATATTGTTGAATTA
*
8170558 ATAAAAA-ATATTTAAATTTTATAAATATTCTAACTATCTACATACAGAAAATAATTTTATAATA
66 ATAAAAATAT-TTTAAATTTTATAAATATTCTAACTATCTACATA-AAAAAAT-ATTTTATAATA
8170622 TAAAAATTAGAAATAATTATCAATGAAAAAGTATAAAGGAAGCACTTATAATTATTGTTTGTTTA
128 TAAAAATTAGAAATAATTATCAATGAAAAAGTATAAAGGAAGCACTTATAATTATTGTTTGTTTA
*
8170687 CTTTATGTATGATATATATATATATATATATTTATTTTTAACTCTTATTTAAAACTAATTAGTAA
193 CTTTATGTATG------ATATATATAT-TATTTATTTTTAACTCTTATTTAAAACTAATTAGTGA
*
8170752 ATAAGAAAAAAACAATAATTAGTAAAAAAAGTTATGTTAGGAAGCATGCATTTCTCCTTTGGTTT
251 ATAAGAAAAAAACAATAATTAGTAAAAAAAGTTATGTTAGGAAGCATGCATTTCTCCTTCGGTTT
*
8170817 TCTTTTTTGTTTCAAATTGTTTCACATT-TTGATGAAACTCTATAAGCCTAATGTATTTTTACGA
316 TCTTTTTTGTTTCAAATTGTTTCACATTGTTGATGAAACTCTATAAGCCTAATGTATTTTTAGGA
* *
8170881 TTAGAATGTT-ATGCAAATTGGCCTTTCATTTTCAATAATGAGTTGTGATAGTTTCCTATCATTT
381 TTAGAATGTTGATGCAAATTGG-CTTTCAATTTCAATAATGAGGTGTGATAGTTTCCTATCATTT
* * *
8170945 TCAATATAGTAAAAAATGACCACCAATCTAACCATTAAACTTATGTTAATATTTTAGTACAAGTG
445 TCAATATAGTAAGAAATTACCACCAACCTAACCATTAAACTTATGTTAATATTTTAGTACAAGTG
*
8171010 GTTAAATGTCCTAAGTAGAGAATCGTCCTTTTAATTTATTTTACTAGCA--T-G-TGAATATTTT
510 GTTAAATGTCCTAAGTAGAGAATCGTCCCTTTAATTTATTTTACTAGCATGTGGCTGAATATTTT
* * *
8171071 AAGCAAAAGTAAAGACTAATTAATTAATTAGTAAGATATAATTTAAATTTAAAGTGCATTTAATA
575 AAGTAAAAGTAAAGACTAATTAATTAATTAGCAAGAGATAATTTAAATTTAAAGTGCATTTAATA
* *
8171136 TGTTATATATAGTTTTATTACTGTTTTGTTTGCAAAGAAAAAGTTATTTTGGGCGACCATGGTAA
640 TGTTATATATAGTTTTATTATTGTTTTGTTTGCAAAGAAAAAGTTATTTTGGGCGACCATGGTGA
* *
8171201 TTGTAGATATTGAGTTGCTTATAAAAATAAAATTTTAACTTACAATTTTAAAAAAATTGATATTA
705 TTGTAGACACTGAGTTGCTTATAAAAATAAAATTTTAACTTACAATTTTAAAAAAATTGATATTA
8171266 TATATAAATTTATTGATATATAAATGTACTATCGTCTATTGCACATATATCGCACAGATTTAACA
770 TATATAAATTTATTGATATATAAATGTACTATCGTCTATTGCACATATATCGCACAGATTTAACA
*
8171331 CTAATTATATATTTAGATTGTAATGCTTATTATAGGCAATTTAAATTCAACTTTTTCAACATGAT
835 CTAATTATATATTTAGATTGTAATGCTTATTATAGGCAATTTAAATTCAACTTTTTCAAAATGAT
* * *
8171396 AAAAAAGGTAAACAACATCATAGTTTATAGAATCAAATTTGACAGTAACCCATTCAAGTTTATCA
900 AAAAAAGGTAAACAACATAATAGTTCATAGAATCAAATTGGACAGTAACCCATTCAAGTTTATCA
8171461 ATCATTGAATCAATAGCTTAATTA
965 ATCATTGAATCAATAGCTTAATTA
*
8171485 TTATCAATCATTGAATAAATAGCTTAATTGTTAGATCATTTGAATCAATTAATATTGTTGAATTA
1 TTATCAATCATTGAATCAATAGCTTAATTGTTAGATCATTTGAATCAATTAATATTGTTGAATTA
8171550 ATAAAAATATTTTAAATTTTATAAATATTCTAACTATCTACATAAAAAAATATTTTATAATATAA
66 ATAAAAATATTTTAAATTTTATAAATATTCTAACTATCTACATAAAAAAATATTTTATAATATAA
8171615 AAATTAGAAATAATTATCAATGAAAAAGTATAAAGGAAGCACTTATAATTATTGTTTGTTTACTT
131 AAATTAGAAATAATTATCAATGAAAAAGTATAAAGGAAGCACTTATAATTATTGTTTGTTTACTT
*
8171680 TATGTATGATATATATATTATTTATTTTTAACTCTTATTTAAAACTAATTAGCGAATAAG-AAAA
196 TATGTATGATATATATATTATTTATTTTTAACTCTTATTTAAAACTAATTAGTGAATAAGAAAAA
8171744 AACAATAATTAGTAAAAAAAGTTATGTTAGGAAGCATGCATTTCTCCTTCGGTTTTCTTTTTTGT
261 AACAATAATTAGTAAAAAAAGTTATGTTAGGAAGCATGCATTTCTCCTTCGGTTTTCTTTTTTGT
* * * *
8171809 TTCAAATTGTTTCACATTGTT-ATAAAACTCTATAAGCCTAATGCATTTTTAGGATTAGCATTTT
326 TTCAAATTGTTTCACATTGTTGATGAAACTCTATAAGCCTAATGTATTTTTAGGATTAGAATGTT
* * * *
8171873 GATGCAAATTAGCTTTTCAATTTCAATAATGAGGTGTAATAATTTTCTATCATTTTCAATATAGT
391 GATGCAAATTGGC-TTTCAATTTCAATAATGAGGTGTGATAGTTTCCTATCATTTTCAATATAGT
8171938 AAGAAATTACCACCAACCTAACCATTAAACTTATGTTAATATTTTAGTACAAGTGGTTAAATGTC
455 AAGAAATTACCACCAACCTAACCATTAAACTTATGTTAATATTTTAGTACAAGTGGTTAAATGTC
8172003 CTAAGTAGAGAATCGTCCCTTTAATTTATTTTACTAG-ATGTGGCTGAATATTTTAAGTAAAAGT
520 CTAAGTAGAGAATCGTCCCTTTAATTTATTTTACTAGCATGTGGCTGAATATTTTAAGTAAAAGT
8172067 AAAGACTAATTAATTAATTAGCAAGAGATAATTTAAATTTAAAGTGCATTTAATATGTTATATAT
585 AAAGACTAATTAATTAATTAGCAAGAGATAATTTAAATTTAAAGTGCATTTAATATGTTATATAT
*
8172132 AGTTTTATTATTGTTTTGTTTGCAAAGAAAAAGTTATTTTGGGCGACCATTGTGATTGTAGACAC
650 AGTTTTATTATTGTTTTGTTTGCAAAGAAAAAGTTATTTTGGGCGACCATGGTGATTGTAGACAC
*
8172197 TGAGTTGCTTATAAAAATAAAATTTTAAC-TACAATTTTTAAAAAATTGATATTATATATAAATT
715 TGAGTTGCTTATAAAAATAAAATTTTAACTTACAATTTTAAAAAAATTGATATTATATATAAATT
*
8172261 TATTGATATATAAATGTATTATCAG-CTATTGCACATATATCGCACAGATTTAACACTAATTATA
780 TATTGATATATAAATGTACTATC-GTCTATTGCACATATATCGCACAGATTTAACACTAATTATA
8172325 TATTTAGATTGTAATGCTTATTATAGGCAATTTAAATTCAACTTTTTCAAAATGATAAAAAAGGT
844 TATTTAGATTGTAATGCTTATTATAGGCAATTTAAATTCAACTTTTTCAAAATGATAAAAAAGGT
* ** *
8172390 GAACAACATAATAGTTCATAGAATCAAATTGGACAGTAATTCATTCAAGTTTATCAATCATTTAA
909 AAACAACATAATAGTTCATAGAATCAAATTGGACAGTAACCCATTCAAGTTTATCAATCATTGAA
*
8172455 TCAATAGCTTAATTG
974 TCAATAGCTTAATTA
*
8172470 TTATCAATCATTTAAATCAATAGCTTAATTGTTAGATCATTTGAATCAATTAATATTGTTGAATT
1 TTATCAATCA-TTGAATCAATAGCTTAATTGTTAGATCATTTGAATCAATTAATATTGTTGAATT
8172535 AATAAAAATATTTTAAATTTTATAAATATTCTAACTATCTACATAAAAAAATATTTTATAATATA
65 AATAAAAATATTTTAAATTTTATAAATATTCTAACTATCTACATAAAAAAATATTTTATAATATA
* *
8172600 AAAATTAGAAATAATTATCAATGAAAAAGTATAAAGGAAGCGCTTATAATTATTGTTTG-TTACA
130 AAAATTAGAAATAATTATCAATGAAAAAGTATAAAGGAAGCACTTATAATTATTGTTTGTTTACT
8172664 TTATGTATGATATATATATTTATTTATTTTTAACTCTTATTTAAAACTAATTAGTGAATAAGAAA
195 TTATGTATGATATATATA-TTATTTATTTTTAACTCTTATTTAAAACTAATTAGTGAATAAGAAA
*
8172729 AAAACAATAATTAGTAAAAAAAGTTATGTTAGGAAGCATGCATTTCTCCTTGGGTTTTCTTTTTT
259 AAAACAATAATTAGTAAAAAAAGTTATGTTAGGAAGCATGCATTTCTCCTTCGGTTTTCTTTTTT
* *
8172794 GTTTCAAAATTTATTTCACATTGTTGATGAAACTCTATAAGCCTAATGTATTTTTAGGATTAGTA
324 GTTTC-AAA-TTGTTTCACATTGTTGATGAAACTCTATAAGCCTAATGTATTTTTAGGATTAGAA
*
8172859 TGTTGATGC-AATTGGCCTTCAA-TTCAATAATGAAGGTGTGATAGTTTCCTATCATTTTC-ATA
387 TGTTGATGCAAATTGGCTTTCAATTTCAATAATG-AGGTGTGATAGTTTCCTATCATTTTCAAT-
* *
8172921 ATAGTAAGAAATTACCACCAACCTAAACCATTTAAACTGTATG-TAAGTATTTTAGTATAAGTGA
450 ATAGTAAGAAATTACCACCAACCT-AACCA-TTAAACT-TATGTTAA-TATTTTAGTACAAGTGG
*
8172985 TTAAATGTCCTAAGTAGAGAATCATCCC-TTAATTTA-TTTACTAGCATGTGGCTGAATATTTTA
511 TTAAATGTCCTAAGTAGAGAATCGTCCCTTTAATTTATTTTACTAGCATGTGGCTGAATATTTTA
*
8173048 AGTAAAAGT-AAGACTAATT-ATTAATTTAGGCAAGAGATAATTTAAATTTAAAATGCATTTAAT
576 AGTAAAAGTAAAGACTAATTAATTAA-TTA-GCAAGAGATAATTTAAATTTAAAGTGCATTTAAT
*
8173111 ATGTTATATATAGTTTTATTATTGTTTTGTTTGCAAAGAAAAAGTTATTTTGGGCCACCATGGTG
639 ATGTTATATATAGTTTTATTATTGTTTTGTTTGCAAAGAAAAAGTTATTTTGGGCGACCATGGTG
*
8173176 ATTGTAGACGCTGAG
704 ATTGTAGACACTGAG
8173191 GGTTTTTTTA
Statistics
Matches: 1620, Mismatches: 62, Indels: 50
0.94 0.04 0.03
Matches are distributed among these distances:
982 126 0.08
983 196 0.12
984 11 0.01
985 264 0.16
986 389 0.24
987 83 0.05
988 60 0.04
989 46 0.03
990 286 0.18
991 52 0.03
992 105 0.06
993 2 0.00
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.40
Consensus pattern (988 bp):
TTATCAATCATTGAATCAATAGCTTAATTGTTAGATCATTTGAATCAATTAATATTGTTGAATTA
ATAAAAATATTTTAAATTTTATAAATATTCTAACTATCTACATAAAAAAATATTTTATAATATAA
AAATTAGAAATAATTATCAATGAAAAAGTATAAAGGAAGCACTTATAATTATTGTTTGTTTACTT
TATGTATGATATATATATTATTTATTTTTAACTCTTATTTAAAACTAATTAGTGAATAAGAAAAA
AACAATAATTAGTAAAAAAAGTTATGTTAGGAAGCATGCATTTCTCCTTCGGTTTTCTTTTTTGT
TTCAAATTGTTTCACATTGTTGATGAAACTCTATAAGCCTAATGTATTTTTAGGATTAGAATGTT
GATGCAAATTGGCTTTCAATTTCAATAATGAGGTGTGATAGTTTCCTATCATTTTCAATATAGTA
AGAAATTACCACCAACCTAACCATTAAACTTATGTTAATATTTTAGTACAAGTGGTTAAATGTCC
TAAGTAGAGAATCGTCCCTTTAATTTATTTTACTAGCATGTGGCTGAATATTTTAAGTAAAAGTA
AAGACTAATTAATTAATTAGCAAGAGATAATTTAAATTTAAAGTGCATTTAATATGTTATATATA
GTTTTATTATTGTTTTGTTTGCAAAGAAAAAGTTATTTTGGGCGACCATGGTGATTGTAGACACT
GAGTTGCTTATAAAAATAAAATTTTAACTTACAATTTTAAAAAAATTGATATTATATATAAATTT
ATTGATATATAAATGTACTATCGTCTATTGCACATATATCGCACAGATTTAACACTAATTATATA
TTTAGATTGTAATGCTTATTATAGGCAATTTAAATTCAACTTTTTCAAAATGATAAAAAAGGTAA
ACAACATAATAGTTCATAGAATCAAATTGGACAGTAACCCATTCAAGTTTATCAATCATTGAATC
AATAGCTTAATTA
Found at i:8175668 original size:43 final size:43
Alignment explanation
Indices: 8175622--8176058 Score: 242
Period size: 43 Copynumber: 10.4 Consensus size: 43
8175612 CTCAATGACT
* * *
8175622 TTTGAAAAATAAAGAAAGTTCCTCTAAATAGAGGCTTAACAAT
1 TTTGAAAAATAAATAAAGCTCCTCTAAATAGAGGCTTAACAAC
* * * ** *
8175665 TTTG-AAAATAAATAAAGCTCTTCTAAACAAAGGCTTAATGAT
1 TTTGAAAAATAAATAAAGCTCCTCTAAATAGAGGCTTAACAAC
* * *
8175707 TTTGAAAAAAATAAAAAAAGCT-CT-T--TTA-A-G-----C-AG
1 TTTG--AAAAATAAATAAAGCTCCTCTAAATAGAGGCTTAACAAC
* * * * * ** *
8175740 TTGGAAAACTAAAAAAGGCTGCTCTAAGCATAGGCTCT-ACAAC
1 TTTGAAAAATAAATAAAGCTCCTCTAAATAGAGGCT-TAACAAC
* * **
8175783 TTTGAAAAATAAATAAAGCTCATCTAAATAAAGGCTTAATGAC
1 TTTGAAAAATAAATAAAGCTCCTCTAAATAGAGGCTTAACAAC
* * * * * *
8175826 TTTGAAAAAATAAAGAAGGTTCCTCTAAACAAAGG-TTCAATAAC
1 TTTG-AAAAATAAATAAAGCTCCTCTAAATAGAGGCTT-AACAAC
** * ** *
8175870 TTTGAAAAATAAATAAAGCTTTTCTAAATAGAGGCTCAATGAT
1 TTTGAAAAATAAATAAAGCTCCTCTAAATAGAGGCTTAACAAC
* * * *
8175913 TTTTAAAAATAAATAAGGCTTCTCTAAATAGAGGCTCAACAAC
1 TTTGAAAAATAAATAAAGCTCCTCTAAATAGAGGCTTAACAAC
* * * * * *
8175956 TTTGAAAAAATGAAGAAGGCTCATTTAAGTAGAGGCTCT-ACAAC
1 TTTG-AAAAATAAATAAAGCTCCTCTAAATAGAGGCT-TAACAAC
* *
8176000 TTTGAAAAATAAATAAAGCTCATCTAAATAGAGG-TTCAACGAC
1 TTTGAAAAATAAATAAAGCTCCTCTAAATAGAGGCTT-AACAAC
*
8176043 TTTGAGAAATAAATAA
1 TTTGAAAAATAAATAA
8176059 GATTCTTTGA
Statistics
Matches: 304, Mismatches: 67, Indels: 46
0.73 0.16 0.11
Matches are distributed among these distances:
31 14 0.05
32 2 0.01
33 5 0.02
35 1 0.00
36 1 0.00
37 1 0.00
39 1 0.00
40 1 0.00
41 2 0.01
42 38 0.12
43 153 0.50
44 71 0.23
45 14 0.05
ACGTcount: A:0.46, C:0.13, G:0.14, T:0.27
Consensus pattern (43 bp):
TTTGAAAAATAAATAAAGCTCCTCTAAATAGAGGCTTAACAAC
Found at i:8175911 original size:87 final size:86
Alignment explanation
Indices: 8175778--8176058 Score: 298
Period size: 87 Copynumber: 3.2 Consensus size: 86
8175768 CATAGGCTCT
* * *
8175778 ACAACTTTGAAAAATAAATAAAGCTCA-TCTAAATAAAGGCTTAATGACTTTGAAAAAATAAAGA
1 ACAACTTTGAAAAATAAATAAAGCT-ATTCTAAATAGAGGCTCAATGACTTTG-AAAAATAAATA
* *
8175842 AGGTTCCTCTAAACAAAGGTTCA
64 AGGTTCCTCTAAATAGAGGTTCA
* * * *
8175865 ATAACTTTGAAAAATAAATAAAGCTTTTCTAAATAGAGGCTCAATGATTTTTAAAAATAAATAAG
1 ACAACTTTGAAAAATAAATAAAGCTATTCTAAATAGAGGCTCAATGACTTTGAAAAATAAATAAG
*
8175930 GCTT-CTCTAAATAGAGGCTCA
66 G-TTCCTCTAAATAGAGGTTCA
* * * * * **
8175951 ACAACTTTGAAAAAATGAAGAAGGCTCATT-TAAGTAGAGGCTCTACAACTTTGAAAAATAAATA
1 ACAACTTTG-AAAAATAAATAAAGCT-ATTCTAAATAGAGGCTCAATGACTTTGAAAAATAAATA
* * *
8176015 AAGCTCATCTAAATAGAGGTTCA
64 AGGTTCCTCTAAATAGAGGTTCA
* *
8176038 ACGACTTTGAGAAATAAATAA
1 ACAACTTTGAAAAATAAATAA
8176059 GATTCTTTGA
Statistics
Matches: 160, Mismatches: 29, Indels: 11
0.80 0.14 0.05
Matches are distributed among these distances:
86 45 0.28
87 113 0.71
88 2 0.01
ACGTcount: A:0.46, C:0.13, G:0.14, T:0.27
Consensus pattern (86 bp):
ACAACTTTGAAAAATAAATAAAGCTATTCTAAATAGAGGCTCAATGACTTTGAAAAATAAATAAG
GTTCCTCTAAATAGAGGTTCA
Found at i:8175939 original size:130 final size:130
Alignment explanation
Indices: 8175771--8176059 Score: 346
Period size: 130 Copynumber: 2.2 Consensus size: 130
8175761 CTCTAAGCAT
* * * * **
8175771 AGGCTCTACAACTTTGAAAAATAAATAAAGCTCATCTAAATAAAGGCTTAATGACTTTGAAAAAA
1 AGGCTCAACGACTTTGAAAAATAAATAAGGCTCATCTAAATAAAGGCTCAACAACTTTGAAAAAA
* * * * **
8175836 TAAAGAAGGTTCCTCTAAACAAAGGTTCAATAACTTTGAAAAATAAATAAAGCTTTTCTAAATAG
66 TAAAGAAGGCTCATCTAAACAAAGGCTCAACAACTTTGAAAAATAAATAAAGCTCATCTAAATAG
* * * *
8175901 AGGCTCAATGATTTTTAAAAATAAATAAGGCTTC-TCTAAATAGAGGCTCAACAACTTTGAAAAA
1 AGGCTCAACGACTTTGAAAAATAAATAAGGC-TCATCTAAATAAAGGCTCAACAACTTTGAAAAA
* * ** * *
8175965 ATGAAGAAGGCTCATTTAAGTAGAGGCTCTACAACTTTGAAAAATAAATAAAGCTCATCTAAATA
65 ATAAAGAAGGCTCATCTAAACAAAGGCTCAACAACTTTGAAAAATAAATAAAGCTCATCTAAATA
8176030 G
130 G
* *
8176031 AGGTTCAACGACTTTGAGAAATAAATAAG
1 AGGCTCAACGACTTTGAAAAATAAATAAG
8176060 ATTCTTTGAC
Statistics
Matches: 131, Mismatches: 27, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
130 129 0.98
131 2 0.02
ACGTcount: A:0.45, C:0.13, G:0.15, T:0.27
Consensus pattern (130 bp):
AGGCTCAACGACTTTGAAAAATAAATAAGGCTCATCTAAATAAAGGCTCAACAACTTTGAAAAAA
TAAAGAAGGCTCATCTAAACAAAGGCTCAACAACTTTGAAAAATAAATAAAGCTCATCTAAATAG
Found at i:8177137 original size:20 final size:20
Alignment explanation
Indices: 8177093--8177138 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
8177083 CCTTTTTCTA
*
8177093 TTTTTTTCATTTTTCTTTTC
1 TTTTTTTCATTTTTCTCTTC
*
8177113 ATTTTTTCATTTTT-TCCTTC
1 TTTTTTTCATTTTTCT-CTTC
8177133 TTTTTT
1 TTTTTT
8177139 CTTCCTTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 1 0.05
20 21 0.95
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTTTTTCATTTTTCTCTTC
Found at i:8185201 original size:14 final size:13
Alignment explanation
Indices: 8185182--8185211 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
8185172 GTCAAATGTT
8185182 AAAAAAAAGTAAAA
1 AAAAAAAAG-AAAA
8185196 AAAAAAAAGAAAA
1 AAAAAAAAGAAAA
8185209 AAA
1 AAA
8185212 GAGCAAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.90, C:0.00, G:0.07, T:0.03
Consensus pattern (13 bp):
AAAAAAAAGAAAA
Found at i:8185227 original size:24 final size:23
Alignment explanation
Indices: 8185182--8185227 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
8185172 GTCAAATGTT
*
8185182 AAAAAAAAGTAAAAAAAAAAAAG
1 AAAAAAAAGCAAAAAAAAAAAAG
* *
8185205 AAAAAAAGAGCAAAGAAAGAAAA
1 AAAAAAA-AGCAAAAAAAAAAAA
8185228 CACATGTACT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.83, C:0.02, G:0.13, T:0.02
Consensus pattern (23 bp):
AAAAAAAAGCAAAAAAAAAAAAG
Found at i:8192152 original size:4 final size:4
Alignment explanation
Indices: 8192143--8192182 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
8192133 GAAAAAAGTT
*
8192143 TTTA TTTA TTTA TTTA --TA TTTA TTTA TTAA TTTA -TTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
8192183 TTATTATTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
2 2 0.06
3 3 0.10
4 26 0.84
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:8192166 original size:18 final size:19
Alignment explanation
Indices: 8192143--8192182 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
8192133 GAAAAAAGTT
*
8192143 TTTATTTATTTATTTA-TA
1 TTTATTTATTAATTTATTA
8192161 TTTATTTATTAATTTATTA
1 TTTATTTATTAATTTATTA
8192180 TTT
1 TTT
8192183 TTATTATTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTATTTATTAATTTATTA
Found at i:8192254 original size:5 final size:5
Alignment explanation
Indices: 8192239--8192313 Score: 66
Period size: 5 Copynumber: 14.8 Consensus size: 5
8192229 AAACCAATAA
* *
8192239 AAAACT AAAAT AAAAT AAAAT AAAAACT TAAA- AAAAT AAAAG AAAAT
1 AAAA-T AAAAT AAAAT AAAAT -AAAA-T AAAAT AAAAT AAAAT AAAAT
*
8192286 AAAAT -CAA- AAAAT AAAAT GAAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT -AAAAT AAAA
8192314 AAGAAAAACC
Statistics
Matches: 57, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
4 7 0.12
5 33 0.58
6 16 0.28
7 1 0.02
ACGTcount: A:0.77, C:0.04, G:0.03, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:8192257 original size:18 final size:17
Alignment explanation
Indices: 8192234--8192320 Score: 77
Period size: 18 Copynumber: 4.8 Consensus size: 17
8192224 TATTAAAACC
8192234 AATAAAAAACTAAAATAA
1 AATAAAAAA-TAAAATAA
*
8192252 AATAAAATAA-AAACTTAA
1 AATAAAA-AATAAA-ATAA
* *
8192270 AAAAATAAAAGAAAATAA
1 AATAA-AAAATAAAATAA
8192288 AATCAAAAAATAAAATGAA
1 AAT-AAAAAATAAAAT-AA
*
8192307 AATAAAAAAGAAAA
1 AATAAAAAATAAAA
8192321 ACCTATGATT
Statistics
Matches: 57, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
17 3 0.05
18 40 0.70
19 14 0.25
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.15
Consensus pattern (17 bp):
AATAAAAAATAAAATAA
Found at i:8192271 original size:31 final size:32
Alignment explanation
Indices: 8192236--8192296 Score: 97
Period size: 31 Copynumber: 1.9 Consensus size: 32
8192226 TTAAAACCAA
* *
8192236 TAAAAAACTAAAATAAAATAAAAT-AAAAACT
1 TAAAAAAATAAAAGAAAATAAAATCAAAAACT
8192267 TAAAAAAATAAAAGAAAATAAAATCAAAAA
1 TAAAAAAATAAAAGAAAATAAAATCAAAAA
8192297 ATAAAATGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 22 0.81
32 5 0.19
ACGTcount: A:0.77, C:0.05, G:0.02, T:0.16
Consensus pattern (32 bp):
TAAAAAAATAAAAGAAAATAAAATCAAAAACT
Found at i:8192274 original size:21 final size:22
Alignment explanation
Indices: 8192238--8192284 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
8192228 AAAACCAATA
*
8192238 AAAAACTAAAATAAAATAAAAT
1 AAAAACTAAAATAAAATAAAAG
*
8192260 AAAAACTTAAA-AAAATAAAAG
1 AAAAACTAAAATAAAATAAAAG
8192281 AAAA
1 AAAA
8192285 TAAAATCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.79, C:0.04, G:0.02, T:0.15
Consensus pattern (22 bp):
AAAAACTAAAATAAAATAAAAG
Found at i:8192302 original size:31 final size:30
Alignment explanation
Indices: 8192234--8192302 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 30
8192224 TATTAAAACC
* *
8192234 AATAAAAAACTAAAATAAAATAAAATAAAA
1 AATAAAAAAATAAAAGAAAATAAAATAAAA
*
8192264 ACTTAAAAAAATAAAAGAAAATAAAATCAAAA
1 A-ATAAAAAAATAAAAGAAAATAAAAT-AAAA
8192296 AATAAAA
1 AATAAAA
8192303 TGAAAATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
30 1 0.03
31 27 0.82
32 5 0.15
ACGTcount: A:0.78, C:0.04, G:0.01, T:0.16
Consensus pattern (30 bp):
AATAAAAAAATAAAAGAAAATAAAATAAAA
Found at i:8192315 original size:26 final size:26
Alignment explanation
Indices: 8192245--8192321 Score: 90
Period size: 26 Copynumber: 3.1 Consensus size: 26
8192235 ATAAAAAACT
*
8192245 AAAATAAAAT-AAAATAAAAACTTAAA
1 AAAATAAAATGAAAATAAAAA-ATAAA
*
8192271 AAAATAAAA-GAAAAT--AAAATCAA
1 AAAATAAAATGAAAATAAAAAATAAA
*
8192294 AAAATAAAATGAAAATAAAAAAGAAA
1 AAAATAAAATGAAAATAAAAAATAAA
8192320 AA
1 AA
8192322 CCTATGATTC
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
23 12 0.28
24 9 0.21
26 22 0.51
ACGTcount: A:0.79, C:0.03, G:0.04, T:0.14
Consensus pattern (26 bp):
AAAATAAAATGAAAATAAAAAATAAA
Found at i:8192771 original size:6 final size:6
Alignment explanation
Indices: 8192762--8192790 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
8192752 CTACCTCTAG
8192762 AAACCT AAACCT AAACCT AAACCT AAACC
1 AAACCT AAACCT AAACCT AAACCT AAACC
8192791 CAAAAACTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.34, G:0.00, T:0.14
Consensus pattern (6 bp):
AAACCT
Found at i:8193207 original size:3 final size:3
Alignment explanation
Indices: 8193147--8193193 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
8193137 AAAGAAGGAT
8193147 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
8193194 TAGACTATAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:8194912 original size:29 final size:26
Alignment explanation
Indices: 8194870--8194922 Score: 70
Period size: 29 Copynumber: 1.9 Consensus size: 26
8194860 CATCCAATTT
8194870 TTTTCAATCCTAAAAATATATAAAAACA
1 TTTTCAATCCTAAAAA-ATA-AAAAACA
*
8194898 TTTTCAAATCTTAAAAAATAAAAAA
1 TTTTC-AATCCTAAAAAATAAAAAA
8194923 TAGAAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 5 0.22
28 8 0.35
29 10 0.43
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (26 bp):
TTTTCAATCCTAAAAAATAAAAAACA
Found at i:8197265 original size:21 final size:23
Alignment explanation
Indices: 8197241--8197283 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 23
8197231 CAATAAATTA
8197241 AAAAATAACAA-GT-AAATATGT
1 AAAAATAACAATGTAAAATATGT
* *
8197262 AAAACTAAGAATGTAAAATATG
1 AAAAATAACAATGTAAAATATG
8197284 AGAGAATCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 9 0.50
22 2 0.11
23 7 0.39
ACGTcount: A:0.60, C:0.05, G:0.12, T:0.23
Consensus pattern (23 bp):
AAAAATAACAATGTAAAATATGT
Found at i:8198630 original size:62 final size:62
Alignment explanation
Indices: 8198518--8198694 Score: 171
Period size: 63 Copynumber: 2.8 Consensus size: 62
8198508 CACTATTTGC
* * * * *
8198518 AAAGAAGATTATTGAAGGCATTTTTTGAAAAAAAAATGCCTTTAATAATCCCC-CTAAATTTTTT
1 AAAGGAGACTATTAAAGGCATTTTCT-ACAAAAAAATG-CTTTAATAATCCCCTCT-AATTTTTT
* * * *
8198582 -GAGGAGACTATTAAAGGCGTTTTTTGAC-TAAAAATGCTTTCAATAATCCCCTCTAATTTTTT
1 AAAGGAGACTATTAAAGGCATTTTCT-ACAAAAAAATGCTTT-AATAATCCCCTCTAATTTTTT
* * *
8198644 AAAGGGGATTATTAAAGGCATTTTCTACAAAAAAACGCTTTTAATAATCCC
1 AAAGGAGACTATTAAAGGCATTTTCTACAAAAAAATGC-TTTAATAATCCC
8198695 TTTTTTATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
61 4 0.04
62 27 0.29
63 60 0.64
64 3 0.03
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (62 bp):
AAAGGAGACTATTAAAGGCATTTTCTACAAAAAAATGCTTTAATAATCCCCTCTAATTTTTT
Found at i:8199555 original size:63 final size:58
Alignment explanation
Indices: 8199411--8199568 Score: 167
Period size: 63 Copynumber: 2.7 Consensus size: 58
8199401 ACATGGATAT
* *
8199411 TTATTGAAGG-AGTTTTTG-AAAAACGCCTTCAATAATCCCCAAAATTTTTAAAGAGA
1 TTATTGAAGGCATTTTTTGCAAAAATGCCTTCAATAATCCCCAAAATTTTTAAAGAGA
* * * * * *
8199467 TTATTGATGGCGTTTTTGGTCAAAAATGCCTTCAATAATCCCCATCAATTTTTTTAGAGGGGA
1 TTATTGAAGGCATTTTTTG-CAAAAATGCCTTCAATAATCCCCA--AA-ATTTTTA-AAGAGA
*
8199530 TTATTGAAGGCATTTTTTGCAAAAAATGCCTTGAATAAT
1 TTATTGAAGGCATTTTTTGC-AAAAATGCCTTCAATAAT
8199569 TTGTTTATAA
Statistics
Matches: 82, Mismatches: 12, Indels: 9
0.80 0.12 0.09
Matches are distributed among these distances:
56 9 0.11
57 5 0.06
59 22 0.27
61 2 0.02
62 7 0.09
63 37 0.45
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (58 bp):
TTATTGAAGGCATTTTTTGCAAAAATGCCTTCAATAATCCCCAAAATTTTTAAAGAGA
Found at i:8201704 original size:22 final size:20
Alignment explanation
Indices: 8201663--8201705 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
8201653 TTACAAAAAC
*
8201663 ATTTTATTATTATTTAATAA
1 ATTTTATTATTAGTTAATAA
*
8201683 ATTTTTTTATATAGTTATATAA
1 ATTTTATTAT-TAGTTA-ATAA
8201705 A
1 A
8201706 CAATAATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 9 0.47
21 5 0.26
22 5 0.26
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (20 bp):
ATTTTATTATTAGTTAATAA
Found at i:8202342 original size:234 final size:230
Alignment explanation
Indices: 8201703--8202501 Score: 703
Period size: 234 Copynumber: 3.4 Consensus size: 230
8201693 ATAGTTATAT
* * * *
8201703 AAACAATAATTAATTAAAATTTTATATTACCAACTTAATTATTTACGTTATATTAATATTTTCGT
1 AAACAATAATTAATTAAAATTTTACATTACCTACTTAATTATTTACGTTATAATAATATTTTCTT
* * * * * * ***
8201768 ACAATTATTCTTA-TACTCCAA-TAAGTTTAGGATTATCATAATTCTTTTTTAATGTGTTGTGAC
66 ACAATTATTCTTACT--TTCAATTACGTTTAGAATTGTTATAA--CTTTTTTAGT-TGTTACAAC
* * * *
8201831 ACTTCTTACCCATTTTATGTCAAATGATATGAATTTTACACTTCTTT-TCACTTGGTCATGTTAC
126 ACTTTTTACCCATTTTA-GACAAATGATATGAATTTTACACTT-TTTCTCACTTGTTTATGTTAC
* *
8201895 TTATTTGTTTTTTAAATTTTA-TCTATTTTTCTTATATATTTACAA
189 TTATTTG-TTTTTAATTTTTAGT-TA-TTTTCTTATATATTAAC-A
* * * * *
8201940 AAATAATAATTAATTAAAA--TT--A-T--GT-GTTAATTATTTACGTTGTAATTATATCTTT-T
1 AAACAATAATTAATTAAAATTTTACATTACCTACTTAATTATTTACGTTATAATAATAT-TTTCT
** * * * * *
8201996 TATGATTGTTCTTACATTCCATTACGTTTACAATTGTTATACCTATTTTTTAGTTGTATTACAAC
65 TACAATTATTCTTACTTTCAATTACGTTTAGAATTGTTATAAC--TTTTTTAGTTG--TTACAAC
* * ** **
8202061 ACTTTTTACTCATTTTATATCAAATGATATGAATTTTA-AGATTTTCTCACTTGTTTACATTACT
126 ACTTTTTACCCATTTTAGA-CAAATGATATGAATTTTACACTTTTTCTCACTTGTTTATGTTACT
8202125 TATTTGTTTTTAATTTTTAGTTATTTTGCTTATATATTAACA
190 TATTTGTTTTTAATTTTTAGTTATTTT-CTTATATATTAACA
* *
8202167 AAACAATAATTAATTAAAATTTTACATTACCTACTTAATTATTTACATTATAATAATATTTTTTT
1 AAACAATAATTAATTAAAATTTTACATTACCTACTTAATTATTTACGTTATAATAATATTTTCTT
* * * * *
8202232 ACAATTGTTCTTACTTTTAATTATGTTTAGAATTGTTATAACTTTTTCATAGTATGTTACAATAG
66 ACAATTATTCTTACTTTCAATTACGTTTAGAATTGTTATAACTTTTT--TAGT-TGTTACAACAC
* * *
8202297 TTTTTACCCATTTTACGACAAATGATATAAATTTTACA-TTTTTCTCACTTATTTATGTTACCTA
128 TTTTTACCCATTTTA-GACAAATGATATGAATTTTACACTTTTTCTCACTTGTTTATGTTACTTA
* **
8202361 TTTTTTTTTAATTTTTAGACATTTTCTTATATATTTATA-A
192 TTTGTTTTTAATTTTTAGTTATTTTCTTATATA-TTA-ACA
* * * * * ** * *
8202401 AAACAATACTCAATTAACAGTTTACGTTATTTACTTAATTATTTATGTTATAACAATATTTTCTT
1 AAACAATAATTAATTAAAATTTTACATTACCTACTTAATTATTTACGTTATAATAATATTTTCTT
* * * *
8202466 ACGATTATTTTTACCTTCCATTACGTTTAGAATTGT
66 ACAATTATTCTTACTTTCAATTACGTTTAGAATTGT
8202502 CATAGCTCTT
Statistics
Matches: 454, Mismatches: 81, Indels: 57
0.77 0.14 0.10
Matches are distributed among these distances:
227 24 0.05
228 34 0.07
229 80 0.18
230 40 0.09
231 1 0.00
232 2 0.00
233 14 0.03
234 172 0.38
235 67 0.15
236 2 0.00
237 18 0.04
ACGTcount: A:0.32, C:0.12, G:0.06, T:0.50
Consensus pattern (230 bp):
AAACAATAATTAATTAAAATTTTACATTACCTACTTAATTATTTACGTTATAATAATATTTTCTT
ACAATTATTCTTACTTTCAATTACGTTTAGAATTGTTATAACTTTTTTAGTTGTTACAACACTTT
TTACCCATTTTAGACAAATGATATGAATTTTACACTTTTTCTCACTTGTTTATGTTACTTATTTG
TTTTTAATTTTTAGTTATTTTCTTATATATTAACA
Found at i:8205270 original size:18 final size:19
Alignment explanation
Indices: 8205236--8205271 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
8205226 GAAATTCATT
8205236 ATATTATCTTATATTTTAA
1 ATATTATCTTATATTTTAA
*
8205255 ATATTAT-TTTTATTTTA
1 ATATTATCTTATATTTTA
8205272 TGTATATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (19 bp):
ATATTATCTTATATTTTAA
Found at i:8207061 original size:2 final size:2
Alignment explanation
Indices: 8207054--8207086 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8207044 ATAGGCCTTG
8207054 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8207087 AAGTTTTTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8210871 original size:18 final size:18
Alignment explanation
Indices: 8210850--8210884 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
8210840 TCAAATGTTT
8210850 AAAAAAAGTAAA-AAAAAA
1 AAAAAAAG-AAAGAAAAAA
8210868 AAAAAAAGAAAGAAAAA
1 AAAAAAAGAAAGAAAAA
8210885 CATGTACTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.89, C:0.00, G:0.09, T:0.03
Consensus pattern (18 bp):
AAAAAAAGAAAGAAAAAA
Found at i:8213137 original size:23 final size:23
Alignment explanation
Indices: 8213090--8213182 Score: 80
Period size: 23 Copynumber: 4.1 Consensus size: 23
8213080 TTCAGATCAA
* * * *
8213090 ACTTTAAGCCTAGAGTAGCTGGC
1 ACTTTAAGCCCATATTAGCTAGC
* *
8213113 ACTTTAAGCCCATATTCGCTTGC
1 ACTTTAAGCCCATATTAGCTAGC
* *
8213136 AC-CTAAACCCATATTAGCTAGC
1 ACTTTAAGCCCATATTAGCTAGC
* * *
8213158 ATTTTAAGCTCAAATTAGCTAGC
1 ACTTTAAGCCCATATTAGCTAGC
8213181 AC
1 AC
8213183 CTGAGCCTAG
Statistics
Matches: 54, Mismatches: 15, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
22 17 0.31
23 37 0.69
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (23 bp):
ACTTTAAGCCCATATTAGCTAGC
Found at i:8213446 original size:26 final size:26
Alignment explanation
Indices: 8213410--8213461 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
8213400 ATGATGAGCA
8213410 TTCAAATATTTATAAGACCTCTTGAC
1 TTCAAATATTTATAAGACCTCTTGAC
8213436 TTCAAATATTTATAAGACCTCTTGAC
1 TTCAAATATTTATAAGACCTCTTGAC
8213462 ATAATCTCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.19, G:0.08, T:0.38
Consensus pattern (26 bp):
TTCAAATATTTATAAGACCTCTTGAC
Found at i:8213602 original size:96 final size:96
Alignment explanation
Indices: 8213436--8213954 Score: 454
Period size: 96 Copynumber: 5.4 Consensus size: 96
8213426 ACCTCTTGAC
* * * * **
8213436 TTCAAATATTTATAAGACCTCT-TGACATAATCTCTAAGATCTCTTGACAAAATATTTTAAATTT
1 TTCAAAGATTTATAAGACCTCTAAG-CATAATCTCTAAGACCTCTAGGTAAAATATTTTAAATTT
* * * *
8213500 TTAAAGTTTTAACACCTTTGATACGATAAGCA
65 TTAAAGTTTCAACACCTATGATATGAAAAGCA
* * * * *
8213532 TTCAAAGATTTGTAAGACCTCCAAACATAATCTCTAAGACCTCTAAGCAAAATATTTTAAATTTT
1 TTCAAAGATTTATAAGACCTCTAAGCATAATCTCTAAGACCTCTAGGTAAAATATTTTAAATTTT
* ** *
8213597 CAAAGTTTCAATTCCTATGATATAAAAAGCA
66 TAAAGTTTCAACACCTATGATATGAAAAGCA
* * * * * *
8213628 CTCAAAGATTTGTAAAACCTCTGAGCATAATATCTAAGACCTTTAGGTAAAATATTTTAAATTTT
1 TTCAAAGATTTATAAGACCTCTAAGCATAATCTCTAAGACCTCTAGGTAAAATATTTTAAATTTT
** * *
8213693 TAAAGTTTCAATGCCTATAATATGAGGAA-CA
66 TAAAGTTTCAACACCTATGATATGA-AAAGCA
* * * * * * *
8213724 TTCAAAAATTTATAACACCTTTAAGTATAATCTTTAAGACCCCCT-GGTAAAATATTTAAAATTT
1 TTCAAAGATTTATAAGACCTCTAAGCATAATCTCTAAGA-CCTCTAGGTAAAATATTTTAAATTT
* * * * * * * **
8213788 TCAAAGTTTCAGCGCTTCTAATACGAGGAGCA
65 TTAAAGTTTCAACACCTATGATATGAAAAGCA
* * * * *
8213820 TTAAAAAATTTACAAGA-CTTTCAGGCATAATCTCTAAGACCTCTAGGTAAAATATTTTAAATTT
1 TTCAAAGATTTATAAGACCTCT-AAGCATAATCTCTAAGACCTCTAGGTAAAATATTTTAAATTT
* *
8213884 TTAAAGTTTTAACACCTATGATATAAAAAGCA
65 TTAAAGTTTCAACACCTATGATATGAAAAGCA
* * * **
8213916 TTCAAAGA-TTGTACGACTTCTGGGCATAATCTCTAAGAC
1 TTCAAAGATTTATAAGACCTCTAAGCATAATCTCTAAGAC
8213955 TTCTGAACAT
Statistics
Matches: 339, Mismatches: 77, Indels: 15
0.79 0.18 0.03
Matches are distributed among these distances:
95 32 0.09
96 302 0.89
97 5 0.01
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (96 bp):
TTCAAAGATTTATAAGACCTCTAAGCATAATCTCTAAGACCTCTAGGTAAAATATTTTAAATTTT
TAAAGTTTCAACACCTATGATATGAAAAGCA
Found at i:8213958 original size:22 final size:22
Alignment explanation
Indices: 8213930--8213976 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
8213920 AAGATTGTAC
** *
8213930 GACTTCTGGGCATAATCTCTAA
1 GACTTCTGAACATAATCTATAA
8213952 GACTTCTGAACATAATCTATAA
1 GACTTCTGAACATAATCTATAA
8213974 GAC
1 GAC
8213977 CTCCAAACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (22 bp):
GACTTCTGAACATAATCTATAA
Found at i:8213985 original size:22 final size:22
Alignment explanation
Indices: 8213940--8213985 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
8213930 GACTTCTGGG
* * **
8213940 CATAATCTCTAAGACTTCTGAA
1 CATAATCTATAAGACCTCCAAA
8213962 CATAATCTATAAGACCTCCAAA
1 CATAATCTATAAGACCTCCAAA
8213984 CA
1 CA
8213986 AAATATTTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.41, C:0.26, G:0.07, T:0.26
Consensus pattern (22 bp):
CATAATCTATAAGACCTCCAAA
Found at i:8214084 original size:22 final size:22
Alignment explanation
Indices: 8214052--8214110 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
8214042 TCGAGATTTT
*
8214052 TAAGACCTTCAGGCATAATCTC-
1 TAAGACTTTCAGGCATAATC-CA
*
8214074 TAAGACTTTCAGGTATAATCCA
1 TAAGACTTTCAGGCATAATCCA
8214096 TAAGACCTTT-AGGCA
1 TAAGA-CTTTCAGGCA
8214111 AAACATTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 1 0.03
22 27 0.84
23 4 0.12
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (22 bp):
TAAGACTTTCAGGCATAATCCA
Found at i:8214099 original size:125 final size:126
Alignment explanation
Indices: 8213938--8214213 Score: 299
Period size: 125 Copynumber: 2.2 Consensus size: 126
8213928 ACGACTTCTG
* ** * *
8213938 GGCATAATCTCTAAGAC-TTCTGAACATAATCTATAAGACCTCCAAACAAAATATTTTAAAATTT
1 GGCATAATCTCTAAGACTTTCAG-GTATAATCCATAAGACCTCCAAACAAAACATTTT-AAATTT
* * ** * *
8214002 T-GAAGTATCAATGCCTCTGATATGAGGTGCATTCAAAGAT-TCGAGATTTTTAAGACCTTCA
64 TCAAAGTATCAATGCCTCTGATACGAGGAACATTCAAAGATGCCGAGATTTGTAAGACCTTCA
** **
8214063 GGCATAATCTCTAAGACTTTCAGGTATAATCCATAAGACCTTTAGGCAAAACATTTTAAATTTTC
1 GGCATAATCTCTAAGACTTTCAGGTATAATCCATAAGACCTCCAAACAAAACATTTTAAATTTTC
* * * * * *
8214128 AAAGTTTTAATGCCTCTGATACGAGGAATATTCATAGATGCCGAGATTTGTAATACCTTTA
66 AAAGTATCAATGCCTCTGATACGAGGAACATTCAAAGATGCCGAGATTTGTAAGACCTTCA
* *
8214189 -GCATAATCTATAAGATTTTCAGGTA
1 GGCATAATCTCTAAGACTTTCAGGTA
8214214 AAATATTTTA
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
124 7 0.06
125 97 0.78
126 21 0.17
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (126 bp):
GGCATAATCTCTAAGACTTTCAGGTATAATCCATAAGACCTCCAAACAAAACATTTTAAATTTTC
AAAGTATCAATGCCTCTGATACGAGGAACATTCAAAGATGCCGAGATTTGTAAGACCTTCA
Found at i:8214409 original size:104 final size:104
Alignment explanation
Indices: 8214100--8214409 Score: 354
Period size: 104 Copynumber: 3.0 Consensus size: 104
8214090 AATCCATAAG
* * * *
8214100 ACCTTTAGGCAAAACATTTTAAATTTTCAAAGTTTTAATGCCTCTGATACGAGGAATATTCATAG
1 ACCTTTAGGTAAAACATTTTAAATTTTCAAAGTTTCAATGCCTCTAATACGAGGAACATTCATAG
* * * * *
8214165 ATGCCGAGATTTGTAATACCTTTA-GCATAATCTATAAG
66 ATACCGAGATTTGTAAGACCTCTAGGCATAATCTCTAAA
* * ** *
8214203 A-TTTTCAGGTAAAATATTTTAAATTTTTGAAGTTTCAATGCCTCTAATACGAGGAACATTCAAA
1 ACCTTT-AGGTAAAACATTTTAAATTTTCAAAGTTTCAATGCCTCTAATACGAGGAACATTCATA
** *
8214267 GATATTGAGATTTGTAAGACCTCTAGGCATAATATCTAAA
65 GATACCGAGATTTGTAAGACCTCTAGGCATAATCTCTAAA
* * * ** *
8214307 ACCTCTAGGTAAAACATTTTAAAATTTCAAAGTTTCAATGCCTTTAATATAAGGAGCATTCATAG
1 ACCTTTAGGTAAAACATTTTAAATTTTCAAAGTTTCAATGCCTCTAATACGAGGAACATTCATAG
* * * *
8214372 ATACCCAGATTTGTAAGACCTGTAGGTATAACCTCTAA
66 ATACCGAGATTTGTAAGACCTCTAGGCATAATCTCTAA
8214410 GTCTTCTGAG
Statistics
Matches: 169, Mismatches: 35, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
102 3 0.02
103 71 0.42
104 93 0.55
105 2 0.01
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.34
Consensus pattern (104 bp):
ACCTTTAGGTAAAACATTTTAAATTTTCAAAGTTTCAATGCCTCTAATACGAGGAACATTCATAG
ATACCGAGATTTGTAAGACCTCTAGGCATAATCTCTAAA
Found at i:8217307 original size:20 final size:21
Alignment explanation
Indices: 8217270--8217308 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
8217260 AAATTAAAGA
8217270 AAATATGTAAATAATAATATG
1 AAATATGTAAATAATAATATG
8217291 AAATA-GTAAA-AATTAATA
1 AAATATGTAAATAA-TAATA
8217309 ATTAAATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 2 0.12
20 10 0.59
21 5 0.29
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (21 bp):
AAATATGTAAATAATAATATG
Found at i:8218440 original size:12 final size:12
Alignment explanation
Indices: 8218423--8218465 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
8218413 ATTTATTTAT
8218423 TATTCATGAATA
1 TATTCATGAATA
**
8218435 TATTCATTTATA
1 TATTCATGAATA
* *
8218447 TATTAATGAACA
1 TATTCATGAATA
8218459 TATTCAT
1 TATTCAT
8218466 TTAATATTTA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.40, C:0.09, G:0.05, T:0.47
Consensus pattern (12 bp):
TATTCATGAATA
Found at i:8218455 original size:24 final size:24
Alignment explanation
Indices: 8218417--8218473 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
8218407 GTTATGATTT
* *
8218417 ATTTAT-TATTCATGAATATATTC
1 ATTTATATATTAATGAACATATTC
8218440 ATTTATATATTAATGAACATATTC
1 ATTTATATATTAATGAACATATTC
8218464 ATTTA-ATATT
1 ATTTATATATT
8218474 TACGAATGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
23 11 0.35
24 20 0.65
ACGTcount: A:0.39, C:0.07, G:0.04, T:0.51
Consensus pattern (24 bp):
ATTTATATATTAATGAACATATTC
Found at i:8219507 original size:15 final size:14
Alignment explanation
Indices: 8219467--8219509 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
8219457 TAGTCATTAT
* *
8219467 TTTATGATTATTTG
1 TTTATTATTATTTA
8219481 TTTATTATTTATTTA
1 TTTATTA-TTATTTA
8219496 TTTATTCATTATTT
1 TTTATT-ATTATTT
8219510 TAATATTTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 6 0.24
15 18 0.72
16 1 0.04
ACGTcount: A:0.23, C:0.02, G:0.05, T:0.70
Consensus pattern (14 bp):
TTTATTATTATTTA
Found at i:8220573 original size:24 final size:25
Alignment explanation
Indices: 8220541--8220587 Score: 87
Period size: 24 Copynumber: 1.9 Consensus size: 25
8220531 AATTTTTAAG
8220541 AAATGGTAAATTTTTAA-AAATTTC
1 AAATGGTAAATTTTTAAGAAATTTC
8220565 AAATGGTAAATTTTTAAGAAATT
1 AAATGGTAAATTTTTAAGAAATT
8220588 CCTAGGTGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.47, C:0.02, G:0.11, T:0.40
Consensus pattern (25 bp):
AAATGGTAAATTTTTAAGAAATTTC
Found at i:8220706 original size:11 final size:12
Alignment explanation
Indices: 8220681--8220708 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
8220671 TTTCAATTAT
8220681 AAAAGAAAATAA
1 AAAAGAAAATAA
8220693 AAAAGAAAATAA
1 AAAAGAAAATAA
8220705 AAAA
1 AAAA
8220709 ATTTAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.86, C:0.00, G:0.07, T:0.07
Consensus pattern (12 bp):
AAAAGAAAATAA
Found at i:8221394 original size:213 final size:212
Alignment explanation
Indices: 8220953--8221559 Score: 810
Period size: 213 Copynumber: 2.9 Consensus size: 212
8220943 GGTAAATTTC
* * * *
8220953 CTAAGAAATCTCTAGGTGAGAAATTTATTTAAATTTGTTCCAAATGATAGAAGAATTTAAATGAA
1 CTAAGAAATTTTTAGGTGAGAAATTTATTTAAATTTGTCCCAAATGATGGAAGAATTTAAATGAA
*
8221018 ATTTCAAGAAAATAGTTGTCATATCATTC--AAAAAT----AAT--AAAAAATTTTAAATTGATC
66 ATTTCAAGAAAATAGTTGTCATATCATTCAAAAAAATAAAAAATAAAAAAAATTCTAAATTGATC
* *
8221075 AAAATAGTGAAAAATTTAGAAAT-AAAAAATAAAAATAAATTTCGATGATGAAATTCTTAGTAAT
131 CAAATAGTGAAAAATTTAGAAATAAAAAAATAAAAATAAATTTCGATGATAAAATTCTTAGTAAT
*
8221139 CACAAATGGTTGATTAT
196 CACAAATGGTTAATTAT
* *
8221156 TTAAGAAATTTTTAGGTGAGAAATTTATTTAAATTTATCCCAAATGATGGAAGAATTTAAATGAA
1 CTAAGAAATTTTTAGGTGAGAAATTTATTTAAATTTGTCCCAAATGATGGAAGAATTTAAATGAA
* **
8221221 ATTTCAAAAAAATAGTTGTTGTATCATTCAAAAAAATAAAAAATCAAAAAAAATTCTAAATTGAT
66 ATTTCAAGAAAATAGTTGTCATATCATTCAAAAAAATAAAAAAT-AAAAAAAATTCTAAATTGAT
* * *
8221286 CCAAATTGTGAAAAATTTAGAAATAAAAAAATAAAAATAAATTTTGATGATAAAATTTTTAGTAA
130 CCAAATAGTGAAAAATTTAGAAATAAAAAAATAAAAATAAATTTCGATGATAAAATTCTTAGTAA
** *
8221351 TTGCAAATTGTTAATTAT
195 TCACAAATGGTTAATTAT
* ** * *
8221369 CTAAGAAATTTTTTGGTGAGAAATTTATTTAAATTTGTCATAAATGGTGAAAGAATTTAAATG-A
1 CTAAGAAATTTTTAGGTGAGAAATTTATTTAAATTTGTCCCAAATGATGGAAGAATTTAAATGAA
* * * *
8221433 ATTTTAAGAAAACAGTTGTCATATCATTTAAAAAAATAAAAAA-AAATGAAAATTCTAAATTGA-
66 ATTTCAAGAAAATAGTTGTCATATCATTCAAAAAAATAAAAAATAAA-AAAAATTCTAAATTGAT
* * *
8221496 CTCAAATAGTGAAAAATTTAGAAATAAAAAAATAAAAA-AAAATT-GATAATGAAATTCTTAGTA
130 C-CAAATAGTGAAAAATTTAGAAATAAAAAAATAAAAATAAATTTCGATGATAAAATTCTTAGTA
8221559 A
194 A
8221560 ATGTAATGAT
Statistics
Matches: 354, Mismatches: 38, Indels: 18
0.86 0.09 0.04
Matches are distributed among these distances:
203 85 0.24
205 6 0.02
209 20 0.06
210 9 0.03
211 50 0.14
212 77 0.22
213 107 0.30
ACGTcount: A:0.50, C:0.06, G:0.11, T:0.33
Consensus pattern (212 bp):
CTAAGAAATTTTTAGGTGAGAAATTTATTTAAATTTGTCCCAAATGATGGAAGAATTTAAATGAA
ATTTCAAGAAAATAGTTGTCATATCATTCAAAAAAATAAAAAATAAAAAAAATTCTAAATTGATC
CAAATAGTGAAAAATTTAGAAATAAAAAAATAAAAATAAATTTCGATGATAAAATTCTTAGTAAT
CACAAATGGTTAATTAT
Found at i:8221583 original size:15 final size:15
Alignment explanation
Indices: 8221563--8221595 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
8221553 TTAGTAAATG
8221563 TAATGATTGATTATC
1 TAATGATTGATTATC
8221578 TAATGATTGATTATC
1 TAATGATTGATTATC
8221593 TAA
1 TAA
8221596 GAAATTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.45
Consensus pattern (15 bp):
TAATGATTGATTATC
Found at i:8223034 original size:12 final size:12
Alignment explanation
Indices: 8223014--8223043 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
8223004 TTTTCAATTA
8223014 AAAAAAGAAAAT
1 AAAAAAGAAAAT
*
8223026 AAAAGAGAAAAT
1 AAAAAAGAAAAT
8223038 AAAAAA
1 AAAAAA
8223044 CTAATAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (12 bp):
AAAAAAGAAAAT
Found at i:8223126 original size:323 final size:311
Alignment explanation
Indices: 8222532--8223165 Score: 1004
Period size: 323 Copynumber: 2.0 Consensus size: 311
8222522 AAAATATTTT
* *
8222532 TTTAGAATAAATAATAATTATCCGAAGATAGAATTCTTAGAAATTTTAAATGGTAAATTTCTATG
1 TTTAGAATAAATAATAATTATCCGAAGATAAAATTCTTAGAAATTTCAAATGGTAAATTTCTATG
*
8222597 AAATTCCTAAGTGAGAAATCTTTTCTAAATTTATCTCAAATGGTAGAATAATTTAGATAAAGTTT
66 AAATTCCTAAGTGAGAAATCTTTTCTAAATTTATCTCAAATAGTAGAATAATTTAGATAAAGTTT
*
8222662 CAATAACAGTAATTAATATTTATTTTCAATTAAAAAAAATAAAAGAGAAAAATAAAAAATTAATA
131 CAATAACAGTAATTAATATTTATTTTCAATTAAAAAAAATAAAAGAGAAAAATAAAAAACTAATA
*
8222727 AAAATTTTAGGATTAAATACTAATTATCCAAAGATAAGGCTTTTAAAAATTTGGAATGGTAATTT
196 AAAATTTTAGGATTAAATACTAATTATCCAAAGATAAGGCTCTTAAAAATTTGGAATGGTAATTT
*
8222792 TCTAGGAAATCTCTAAGTGAGAAATTTCTCTAAAGTTGTCCCAAATGGTGG
261 TCTAAGAAATCTCTAAGTGAGAAATTTCTCTAAAGTTGTCCCAAATGGTGG
** *
8222843 TTTAGAATAAATAATAATTATTTGAGGATAAAATTCTTAGAAATTTCAAATGGTAAATTTATAAA
1 TTTAGAATAAATAATAATTATCCGAAGATAAAATTCTTAGAAATTTCAAATGGTAAA--T-T---
* * *
8222908 TTTATAAGAAATTCCTAAGTGAGAAATTTTTTTCTAAATTTGTCTCAAATAGTAGAATAATTTAG
60 TCTAT--GAAATTCCTAAGTGAGAAA-TCTTTTCTAAATTTATCTCAAATAGTAGAATAATTTAG
8222973 ATAAAGTTTCAATAACAGTAATTAATATTTATTTTCAATTAAAAAAAGAAAATAAAAGAG-AAAA
122 ATAAAGTTTCAATAACAGTAATTAATATTTATTTTCAATT---AAAA-AAAATAAAAGAGAAAAA
8223037 TAAAAAACTAATAAAAATTTTAGGATTAAATACTAATTATCC-AAGAATGAA-GCTCTTAAAAAT
183 TAAAAAACTAATAAAAATTTTAGGATTAAATACTAATTATCCAAAG-AT-AAGGCTCTTAAAAAT
8223100 TTGGAATGGTAATTTTCTAAGAAATCTCTAAGTGAGAAATTTCTCTAAAGTTGTCCCAAATGGTG
246 TTGGAATGGTAATTTTCTAAGAAATCTCTAAGTGAGAAATTTCTCTAAAGTTGTCCCAAATGGTG
8223165 G
311 G
8223166 AATAGTTTAG
Statistics
Matches: 296, Mismatches: 12, Indels: 18
0.91 0.04 0.06
Matches are distributed among these distances:
311 52 0.18
313 1 0.00
314 1 0.00
317 4 0.01
319 19 0.06
320 75 0.25
322 3 0.01
323 127 0.43
324 14 0.05
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.35
Consensus pattern (311 bp):
TTTAGAATAAATAATAATTATCCGAAGATAAAATTCTTAGAAATTTCAAATGGTAAATTTCTATG
AAATTCCTAAGTGAGAAATCTTTTCTAAATTTATCTCAAATAGTAGAATAATTTAGATAAAGTTT
CAATAACAGTAATTAATATTTATTTTCAATTAAAAAAAATAAAAGAGAAAAATAAAAAACTAATA
AAAATTTTAGGATTAAATACTAATTATCCAAAGATAAGGCTCTTAAAAATTTGGAATGGTAATTT
TCTAAGAAATCTCTAAGTGAGAAATTTCTCTAAAGTTGTCCCAAATGGTGG
Found at i:8223943 original size:220 final size:214
Alignment explanation
Indices: 8223255--8224069 Score: 1103
Period size: 220 Copynumber: 3.8 Consensus size: 214
8223245 AATTATCCCA
* * * ** * * * *
8223255 ATGATGAGAATTCTTAGAAATTTCAAATTGTAAATT-TTCTAAAAAATCTCTAGGTGAGAAATTT
1 ATGATGA-AATTCTTAGTAATTGCAAATGGTTGATTATT-TAAGAAATTTTTAGGTGAAAAATTT
* * *
8223319 ATTTAAATTTGTTCCAAATGAT-AGAAGAATTTAAATGAAATTTCAAGAAAATAGTTGTCATATC
64 ATTTAAATTTGTCCCAAACGATGA-AAGAATTTAAATGAAATTTCAAAAAAATAGTTGTCATATC
** *
8223383 ATTC--AAAAAAT-----AATTAAAAAAATTTTAAATTGA-TCCAAATAGTGAAAAATTTAGAAA
128 ATTCAAAAAAAATAAAAAAAAAAAAAAAATTCTAAATTGACT-CAAATAGTGAAAAATTTAGAAA
*
8223440 T-AAAAAATAAAAAAAATTTTTG
192 TAAAAAAATAAAAAAAAATTTTG
*
8223462 ATGATGAAATTCTTAGTAATTGCAAATGGTTGATTATTTAAGAAATTTTTAGGTGAGAAATTTAT
1 ATGATGAAATTCTTAGTAATTGCAAATGGTTGATTATTTAAGAAATTTTTAGGTGAAAAATTTAT
*
8223527 TTAAATTTGTCCCAAACGATGGAAGAATTTAAATGAAATTTCAAAAAAATAGTTGTCATATCATT
66 TTAAATTTGTCCCAAACGATGAAAGAATTTAAATGAAATTTCAAAAAAATAGTTGTCATATCATT
* * *
8223592 CAAAAAAAATAAAAAAAACAAAAAAATTCTAAATTGACCCAAATTGTGAAAAATTTAGAAATAAA
131 CAAAAAAAATAAAAAAAAAAAAAAAATTCTAAATTGACTCAAATAGTGAAAAATTTAGAAATAAA
* **
8223657 AAAATAAAAATAAATTGCG
196 AAAATAAAAAAAAATTTTG
* * * * *
8223676 ATGATGAAATTTTTAGTAATTGCAAATTGTTAATTATCTAAGAAATTTTTCGGTGAAAAATTTAT
1 ATGATGAAATTCTTAGTAATTGCAAATGGTTGATTATTTAAGAAATTTTTAGGTGAAAAATTTAT
** * * * *
8223741 TTAAATTTGTCATAAATGATGAAAGAATTTAAATGAAATTTTAAGAAAATAGTTGTCATATCATC
66 TTAAATTTGTCCCAAACGATGAAAGAATTTAAATGAAATTTCAAAAAAATAGTTGTCATATCATT
8223806 CAAAAAAATAATAAAAAAACAAAAAAAAGAAATTCTAAATTGACTCAAATAGTGAAAAATTTAGA
131 C-AAAAAA-AAT--AAAAA-AAAAAAAA-AAATTCTAAATTGACTCAAATAGTGAAAAATTTAGA
8223871 AATAAAAAAATAAAAAAAAATTTTG
190 AATAAAAAAATAAAAAAAAATTTTG
* *
8223896 ATAATGAAATTCTTAGTAATTGCGAATGGTTGATTATTTAAGAAATTTTTAGGTGAAAAATTTAT
1 ATGATGAAATTCTTAGTAATTGCAAATGGTTGATTATTTAAGAAATTTTTAGGTGAAAAATTTAT
*
8223961 TTAAATTTGTCCCAAACGATGAAAGAATTTAAATGAAATTTCAAAAAAATAGTTTTCATATCATT
66 TTAAATTTGTCCCAAACGATGAAAGAATTTAAATGAAATTTCAAAAAAATAGTTGTCATATCATT
* *
8224026 CAAAAAAAATAAAAAAAATAAAAAAATTATAAATTGACTCAAAT
131 CAAAAAAAATAAAAAAAAAAAAAAAATTCTAAATTGACTCAAAT
8224070 TCTTAGTAAA
Statistics
Matches: 535, Mismatches: 56, Indels: 27
0.87 0.09 0.04
Matches are distributed among these distances:
206 108 0.20
207 9 0.02
208 7 0.01
213 41 0.08
214 155 0.29
215 13 0.02
216 8 0.01
218 8 0.01
219 13 0.02
220 173 0.32
ACGTcount: A:0.50, C:0.07, G:0.11, T:0.33
Consensus pattern (214 bp):
ATGATGAAATTCTTAGTAATTGCAAATGGTTGATTATTTAAGAAATTTTTAGGTGAAAAATTTAT
TTAAATTTGTCCCAAACGATGAAAGAATTTAAATGAAATTTCAAAAAAATAGTTGTCATATCATT
CAAAAAAAATAAAAAAAAAAAAAAAATTCTAAATTGACTCAAATAGTGAAAAATTTAGAAATAAA
AAAATAAAAAAAAATTTTG
Found at i:8223967 original size:434 final size:421
Alignment explanation
Indices: 8223255--8224070 Score: 1235
Period size: 434 Copynumber: 1.9 Consensus size: 421
8223245 AATTATCCCA
* * *
8223255 ATGATGAGAATTCTTAGAAATTTCAAATTGTAAATTTTCTAAAAAATCTCTAGGTGAGAAATTTA
1 ATGATGAGAATTCTTAGAAATTGCAAATTGTAAATTATCTAAAAAATCTCTAGGTGAAAAATTTA
8223320 TTTAAATTTGTTCCAAATGATAGAAGAATTTAAATGAAATTTCAAGAAAATAGTTGTCATATCAT
66 TTTAAATTTGTTCCAAATGATAGAAGAATTTAAATGAAATTTCAAGAAAATAGTTGTCATATCAT
* * *
8223385 TCAAAAAATAATTAAAAAAATTTTAAATTGATCCAAATAGTGAAAAATTTAGAAATAAAAAATAA
131 CCAAAAAATAATAAAAAAAATTCTAAATTGATCCAAATAGTGAAAAATTTAGAAATAAAAAATAA
* *
8223450 AAAAAATTTTTGATGATGAAATTCTTAGTAATTGCAAATGGTTGATTATTTAAGAAATTTTTAGG
196 AAAAAAATTTTGATAATGAAATTCTTAGTAATTGCAAATGGTTGATTATTTAAGAAATTTTTAGG
* *
8223515 TGAGAAATTTATTTAAATTTGTCCCAAACGATGGAAGAATTTAAATGAAATTTCAAAAAAATAGT
261 TGAAAAATTTATTTAAATTTGTCCCAAACGATGAAAGAATTTAAATGAAATTTCAAAAAAATAGT
*
8223580 TGTCATATCATTCAAAAAAAATAAAAAAAACAAAAAAATTCTAAATTGACCCAAATTGTGAAAAA
326 TGTCATATCATTCAAAAAAAATAAAAAAAACAAAAAAATTATAAATTGACCCAAATTGTGAAAAA
8223645 TTTAGAAATAAAAAAATAAAAATAAATTGCG
391 TTTAGAAATAAAAAAATAAAAATAAATTGCG
* * * * * * *
8223676 ATGATGA-AATTTTTAGTAATTGCAAATTGTTAATTATCTAAGAAATTTTTCGGTGAAAAATTTA
1 ATGATGAGAATTCTTAGAAATTGCAAATTGTAAATTATCTAAAAAATCTCTAGGTGAAAAATTTA
* *
8223740 TTTAAATTTG-TCATAAATGAT-GAAAGAATTTAAATGAAATTTTAAGAAAATAGTTGTCATATC
66 TTTAAATTTGTTC-CAAATGATAG-AAGAATTTAAATGAAATTTCAAGAAAATAGTTGTCATATC
8223803 ATCCAAAAAAATAATAAAAAAACAAAAAAAAGAAATTCTAAATTGA-CTCAAATAGTGAAAAATT
129 ATCC-AAAAAATAAT-----------AAAAA-AAATTCTAAATTGATC-CAAATAGTGAAAAATT
*
8223867 TAGAAATAAAAAAATAAAAAAAAATTTTGATAATGAAATTCTTAGTAATTGCGAATGGTTGATTA
180 TAGAAAT-AAAAAATAAAAAAAAATTTTGATAATGAAATTCTTAGTAATTGCAAATGGTTGATTA
8223932 TTTAAGAAATTTTTAGGTGAAAAATTTATTTAAATTTGTCCCAAACGATGAAAGAATTTAAATGA
244 TTTAAGAAATTTTTAGGTGAAAAATTTATTTAAATTTGTCCCAAACGATGAAAGAATTTAAATGA
* *
8223997 AATTTCAAAAAAATAGTTTTCATATCATTCAAAAAAAATAAAAAAAATAAAAAAATTATAAATTG
309 AATTTCAAAAAAATAGTTGTCATATCATTCAAAAAAAATAAAAAAAACAAAAAAATTATAAATTG
*
8224062 ACTCAAATT
374 ACCCAAATT
8224071 CTTAGTAAAT
Statistics
Matches: 354, Mismatches: 24, Indels: 21
0.89 0.06 0.05
Matches are distributed among these distances:
419 3 0.01
420 106 0.30
421 17 0.05
432 5 0.01
433 36 0.10
434 187 0.53
ACGTcount: A:0.50, C:0.06, G:0.11, T:0.33
Consensus pattern (421 bp):
ATGATGAGAATTCTTAGAAATTGCAAATTGTAAATTATCTAAAAAATCTCTAGGTGAAAAATTTA
TTTAAATTTGTTCCAAATGATAGAAGAATTTAAATGAAATTTCAAGAAAATAGTTGTCATATCAT
CCAAAAAATAATAAAAAAAATTCTAAATTGATCCAAATAGTGAAAAATTTAGAAATAAAAAATAA
AAAAAAATTTTGATAATGAAATTCTTAGTAATTGCAAATGGTTGATTATTTAAGAAATTTTTAGG
TGAAAAATTTATTTAAATTTGTCCCAAACGATGAAAGAATTTAAATGAAATTTCAAAAAAATAGT
TGTCATATCATTCAAAAAAAATAAAAAAAACAAAAAAATTATAAATTGACCCAAATTGTGAAAAA
TTTAGAAATAAAAAAATAAAAATAAATTGCG
Found at i:8224058 original size:11 final size:9
Alignment explanation
Indices: 8224027--8224051 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
8224017 CATATCATTC
8224027 AAAAAAAAT
1 AAAAAAAAT
8224036 AAAAAAAAT
1 AAAAAAAAT
8224045 AAAAAAA
1 AAAAAAA
8224052 TTATAAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:8224805 original size:16 final size:15
Alignment explanation
Indices: 8224776--8224810 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
8224766 CTCTTTTCCT
*
8224776 TTTGTTTCTTGTGTG
1 TTTGTTTCTGGTGTG
8224791 TTTGATTTCTGGTGTG
1 TTTG-TTTCTGGTGTG
8224807 TTTG
1 TTTG
8224811 GTTGTTAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.03, C:0.06, G:0.29, T:0.63
Consensus pattern (15 bp):
TTTGTTTCTGGTGTG
Found at i:8225359 original size:23 final size:23
Alignment explanation
Indices: 8225329--8225374 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
8225319 AGGCATAGTT
8225329 CTTGAGAAAATGTTAGAACTAAG
1 CTTGAGAAAATGTTAGAACTAAG
8225352 CTTGAGAAAATGTTAGAACTAAG
1 CTTGAGAAAATGTTAGAACTAAG
8225375 TTATGTTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.09, G:0.22, T:0.26
Consensus pattern (23 bp):
CTTGAGAAAATGTTAGAACTAAG
Found at i:8230330 original size:17 final size:17
Alignment explanation
Indices: 8230308--8230360 Score: 52
Period size: 19 Copynumber: 2.9 Consensus size: 17
8230298 AGAAAACAAA
8230308 AGAAAAAAAGAAAAGAG
1 AGAAAAAAAGAAAAGAG
* *
8230325 AGAAAAAATAAAAAAAAG
1 AGAAAAAA-AGAAAAGAG
*
8230343 ATTAAAAACAAGAAAAGA
1 A-GAAAAA-AAGAAAAGA
8230361 AGTCTATCAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
17 8 0.29
18 8 0.29
19 11 0.39
20 1 0.04
ACGTcount: A:0.77, C:0.02, G:0.15, T:0.06
Consensus pattern (17 bp):
AGAAAAAAAGAAAAGAG
Found at i:8230331 original size:18 final size:19
Alignment explanation
Indices: 8230310--8230360 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
8230300 AAAACAAAAG
8230310 AAAAAAAGAAAAGAGA-GA
1 AAAAAAAGAAAAGAGATGA
* *
8230328 AAAAATAA-AAAAAAGATTA
1 AAAAA-AAGAAAAGAGATGA
*
8230347 AAAACAAGAAAAGA
1 AAAAAAAGAAAAGA
8230361 AGTCTATCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
18 14 0.54
19 12 0.46
ACGTcount: A:0.78, C:0.02, G:0.14, T:0.06
Consensus pattern (19 bp):
AAAAAAAGAAAAGAGATGA
Found at i:8230588 original size:23 final size:23
Alignment explanation
Indices: 8230547--8230639 Score: 89
Period size: 23 Copynumber: 4.1 Consensus size: 23
8230537 TTCAGATCAA
* * * *
8230547 ACTTTAAGCCTAGAGTAGCTGGC
1 ACTTTAAGCCCATATTAGCTAGC
*
8230570 ACTTTAAGCCCATATTAGCTTGC
1 ACTTTAAGCCCATATTAGCTAGC
* *
8230593 AC-CTAAACCCATATTAGCTAGC
1 ACTTTAAGCCCATATTAGCTAGC
** *
8230615 ACTTTAAGCTTAAATTAGCTAGC
1 ACTTTAAGCCCATATTAGCTAGC
8230638 AC
1 AC
8230640 CTGAGCCTAG
Statistics
Matches: 57, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
22 19 0.33
23 38 0.67
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (23 bp):
ACTTTAAGCCCATATTAGCTAGC
Found at i:8230969 original size:96 final size:95
Alignment explanation
Indices: 8230803--8231396 Score: 491
Period size: 96 Copynumber: 6.2 Consensus size: 95
8230793 GCACCTAAGT
* ** * ** *
8230803 TAATCTGTAAGACCTTCAAGTAAAACATTTTAAA-TTTCAAAGTTAT-AATGCCTTTGATATGAT
1 TAATCTCTAAGACC-TCTGGTAAAATATTTTAAATTTTCAAAGTT-TCAACACCTCTGATATGAT
* * *
8230866 AAGCATTCAAATATTTATAAAACCTCTTGACA
64 AAGCATTCAAAGATTTGTAAGACCTCTTGACA
* ** * * *
8230898 TAATCTCTAAGATCTCCTGACAAAATATTTTAAATTTTTAAAGTTTTAACACCTCTGATACGATA
1 TAATCTCTAAGACCT-CTGGTAAAATATTTTAAATTTTCAAAGTTTCAACACCTCTGATATGATA
***
8230963 AGCATTCAAAGATTTGTAAGACCTCCAAACA
65 AGCATTCAAAGATTTGTAAGACCTCTTGACA
* * ** * *
8230994 TAATCTCTAAAACCTCTGAGCAAAATATTTTAAATTTTCAAAGTTTCAATTCCTCTGATATAAAA
1 TAATCTCTAAGACCTCTG-GTAAAATATTTTAAATTTTCAAAGTTTCAACACCTCTGATATGATA
* *
8231059 AGCACTCAAAGATTTGTAAAACCTC-TGAGCA
65 AGCATTCAAAGATTTGTAAGACCTCTTGA-CA
* * * ** * * *
8231090 TAATATCTAAGACCTTTAGGTAAAATATTTTAAATTTTTAAAGTTTCAATGCCTATAATATGAGG
1 TAATCTCTAAGACCTCT-GGTAAAATATTTTAAATTTTCAAAGTTTCAACACCTCTGATATGA-T
* *
8231155 AA-CATTCAAAAATTTGTAAGACCT-TTGAGTA
64 AAGCATTCAAAGATTTGTAAGACCTCTTGA-CA
* * * * * * * *
8231186 TAATCTTTAAGACCCCCAGGTAAAATATTTAAAATTTTCAAAGTTTCAACACTTCTAATACGATG
1 TAATCTCTAAGA-CCTCTGGTAAAATATTTTAAATTTTCAAAGTTTCAACACCTCTGATATGATA
* * ** *
8231251 AGCATTAAAAAATTTACAAGA-CT-TTCAGGCA
65 AGCATTCAAAGATTTGTAAGACCTCTT--GACA
* * * *
8231282 TAATCTCTAAGACCTCTAGGTAAAATATTTTAAATTTTTAAAGTTTTAACACCTATGATATGAAA
1 TAATCTCTAAGACCTCT-GGTAAAATATTTTAAATTTTCAAAGTTTCAACACCTCTGATATGATA
* * ** *
8231347 AGCATTCAAAGATTTGTACGACTTCAGGGCA
65 AGCATTCAAAGATTTGTAAGACCTCTTGACA
*
8231378 TAATCTCTAAGATCTCTGG
1 TAATCTCTAAGACCTCTGG
8231397 ACATAATCTA
Statistics
Matches: 398, Mismatches: 86, Indels: 30
0.77 0.17 0.06
Matches are distributed among these distances:
94 1 0.00
95 40 0.10
96 350 0.88
97 7 0.02
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (95 bp):
TAATCTCTAAGACCTCTGGTAAAATATTTTAAATTTTCAAAGTTTCAACACCTCTGATATGATAA
GCATTCAAAGATTTGTAAGACCTCTTGACA
Found at i:8231164 original size:192 final size:192
Alignment explanation
Indices: 8230824--8231364 Score: 574
Period size: 192 Copynumber: 2.8 Consensus size: 192
8230814 ACCTTCAAGT
* * * *
8230824 AAAACATTTTAAA-TTTCAAAGTTAT-AATGCCTTTGATATGATAAGCATTCAAATATTTATAAA
1 AAAATATTTTAAATTTTCAAAGTT-TCAATACCTCTGATATGATAAGCATTCAAAAATTTATAAA
* **
8230887 ACCTCTTGA-CATAATCTCTAAGATCTCCT-GACAAAATATTTTAAATTTTTAAAGTTTTAACAC
65 ACCTC-TGAGCATAATCTCTAAGACCT-CTAGGTAAAATATTTTAAATTTTTAAAGTTTTAACAC
* * * * *
8230950 CTCTGATACGATAAGCATTCAAAGATTTGTAAGACCTCCAAACATAATCTCTAAAA-CCTCTGAG
128 CTATGATATGAAAAGCATTCAAAGATTTGTAAGACCTCCAAACATAATCTCTAAAACCCCCAG-G
8231014 C
192 C
* * * * * *
8231015 AAAATATTTTAAATTTTCAAAGTTTCAATTCCTCTGATATAAAAAGCACTCAAAGATTTGTAAAA
1 AAAATATTTTAAATTTTCAAAGTTTCAATACCTCTGATATGATAAGCATTCAAAAATTTATAAAA
* * * **
8231080 CCTCTGAGCATAATATCTAAGACCTTTAGGTAAAATATTTTAAATTTTTAAAGTTTCAATGCCTA
66 CCTCTGAGCATAATCTCTAAGACCTCTAGGTAAAATATTTTAAATTTTTAAAGTTTTAACACCTA
* * * *** ** * * *
8231145 TAATATGAGGAA-CATTCAAAAATTTGTAAGACCTTTGAGTATAATCTTTAAGACCCCCAGGT
131 TGATATGA-AAAGCATTCAAAGATTTGTAAGACCTCCAAACATAATCTCTAAAACCCCCAGGC
* * * * * * * * *
8231207 AAAATATTTAAAATTTTCAAAGTTTCAACACTTCTAATACGATGAGCATTAAAAAATTTACAAGA
1 AAAATATTTTAAATTTTCAAAGTTTCAATACCTCTGATATGATAAGCATTCAAAAATTTATAAAA
* *
8231272 -CTTTCAGGCATAATCTCTAAGACCTCTAGGTAAAATATTTTAAATTTTTAAAGTTTTAACACCT
66 CCTCTGA-GCATAATCTCTAAGACCTCTAGGTAAAATATTTTAAATTTTTAAAGTTTTAACACCT
8231336 ATGATATGAAAAGCATTCAAAGATTTGTA
130 ATGATATGAAAAGCATTCAAAGATTTGTA
8231365 CGACTTCAGG
Statistics
Matches: 286, Mismatches: 56, Indels: 15
0.80 0.16 0.04
Matches are distributed among these distances:
191 23 0.08
192 257 0.90
193 6 0.02
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (192 bp):
AAAATATTTTAAATTTTCAAAGTTTCAATACCTCTGATATGATAAGCATTCAAAAATTTATAAAA
CCTCTGAGCATAATCTCTAAGACCTCTAGGTAAAATATTTTAAATTTTTAAAGTTTTAACACCTA
TGATATGAAAAGCATTCAAAGATTTGTAAGACCTCCAAACATAATCTCTAAAACCCCCAGGC
Found at i:8231381 original size:288 final size:287
Alignment explanation
Indices: 8230810--8231389 Score: 673
Period size: 288 Copynumber: 2.0 Consensus size: 287
8230800 AGTTAATCTG
* * *
8230810 TAAGACCTTCAAGTAAAACATTTTAAATTTCAAAGTTATAATGCCTTTGATATGATAAGCATTCA
1 TAAGACCTTCAAGTAAAACATTTTAAATTTCAAAGTTATAATGCCTATAATATGAGAAGCATTCA
* * * * * *
8230875 AATATTTATAAAACCTCTTGACATAATCTCTAAGATCTCCTGACAAAATATTTTAAATTTTTAAA
66 AAAATTTATAAAACCTCTTGACATAATCTCTAAGACCCCCAGACAAAATATTTAAAATTTTCAAA
* * * * **
8230940 GTTTTAACACCTCTGATACGATAAGCATTCAAAGATTTGTAAGACCTCCAAACATAATCTCTAAA
131 GTTTCAACACCTCTAATACGATAAGCATTAAAAAATTTACAAGACCTCCAAACATAATCTCTAAA
** *
8231005 ACCTCTGAGCAAAATATTTTAAATTTTCAAAGTTTCAATTCCTCTGATATAAAAAGCACTCAAAG
196 ACCTCTGAGCAAAATATTTTAAATTTTCAAAGTTTCAACACCTATGATATAAAAAGCACTCAAAG
*
8231070 ATTTGTAAAACCTCTGAGCATAATATC
261 ATTTGTAAAACCTCAGAGCATAATATC
* * * *
8231097 TAAGACCTTTAGGTAAAATATTTTAAATTTTTAAAGTT-TCAATGCCTATAATATGAGGAA-CAT
1 TAAGACCTTCAAGTAAAACATTTTAAA-TTTCAAAGTTAT-AATGCCTATAATATGA-GAAGCAT
* * * * **
8231160 TCAAAAATTTGTAAGACCT-TTGAGTATAATCTTTAAGACCCCCAGGTAAAATATTTAAAATTTT
63 TCAAAAATTTATAAAACCTCTTGA-CATAATCTCTAAGACCCCCAGACAAAATATTTAAAATTTT
* * * * **
8231224 CAAAGTTTCAACACTTCTAATACGATGAGCATTAAAAAATTTACAAGACTTTCAGGCATAATCTC
127 CAAAGTTTCAACACCTCTAATACGATAAGCATTAAAAAATTTACAAGACCTCCAAACATAATCTC
* * * * * *
8231289 TAAGACCTCT-AGGTAAAATATTTTAAATTTTTAAAGTTTTAACACCTATGATATGAAAAGCATT
192 TAAAACCTCTGA-GCAAAATATTTTAAATTTTCAAAGTTTCAACACCTATGATATAAAAAGCACT
** * * *
8231353 CAAAGATTTGTACGACTTCAGGGCATAATCTC
256 CAAAGATTTGTAAAACCTCAGAGCATAATATC
8231385 TAAGA
1 TAAGA
8231390 TCTCTGGACA
Statistics
Matches: 242, Mismatches: 46, Indels: 9
0.81 0.15 0.03
Matches are distributed among these distances:
287 30 0.12
288 210 0.87
289 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (287 bp):
TAAGACCTTCAAGTAAAACATTTTAAATTTCAAAGTTATAATGCCTATAATATGAGAAGCATTCA
AAAATTTATAAAACCTCTTGACATAATCTCTAAGACCCCCAGACAAAATATTTAAAATTTTCAAA
GTTTCAACACCTCTAATACGATAAGCATTAAAAAATTTACAAGACCTCCAAACATAATCTCTAAA
ACCTCTGAGCAAAATATTTTAAATTTTCAAAGTTTCAACACCTATGATATAAAAAGCACTCAAAG
ATTTGTAAAACCTCAGAGCATAATATC
Found at i:8231516 original size:22 final size:22
Alignment explanation
Indices: 8231488--8231540 Score: 81
Period size: 22 Copynumber: 2.4 Consensus size: 22
8231478 TCAAGATTTT
8231488 TAAGACCTTCGGGCATAATCTC-
1 TAAGACCTTCGGGCATAATC-CA
*
8231510 TAAGACCTTCGGGTATAATCCA
1 TAAGACCTTCGGGCATAATCCA
8231532 TAAGACCTT
1 TAAGACCTT
8231541 TAGGCAAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 1 0.03
22 28 0.97
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (22 bp):
TAAGACCTTCGGGCATAATCCA
Found at i:8231597 original size:125 final size:125
Alignment explanation
Indices: 8231345--8231649 Score: 310
Period size: 125 Copynumber: 2.4 Consensus size: 125
8231335 TATGATATGA
* ** *
8231345 AAAGCATTCAAAGATTTGTACGA-CTTCAGGGCATAATCTCTAAGATC-TCTGGACATAATCTAT
1 AAAG-ATTC-AAGATTTGTAAGACCTTC-GGGCATAATCTCTAAGATCTTC-GGGTATAATCCAT
* ** **
8231408 AAGACCTCCAAACAAAATATTTTAAATTTTTGAAGTATCAATGCCTCTGATACGAAGTGCATTC
62 AAGACCTCCAAACAAAACATTTTAAATTTTCAAAGTATCAATGCCTCTGATACGAAGAACATTC
* *
8231472 AAAGATTCAAGATTTTTAAGACCTTCGGGCATAATCTCTAAGACCTTCGGGTATAATCCATAAGA
1 AAAGATTCAAGATTTGTAAGACCTTCGGGCATAATCTCTAAGATCTTCGGGTATAATCCATAAGA
** ** * * * *
8231537 CCTTTAGGCAAAACATTTTAAATTTTCAAAGTTTTAATGCCTCTGATACGAGGAATATTC
66 CCTCCAAACAAAACATTTTAAATTTTCAAAGTATCAATGCCTCTGATACGAAGAACATTC
* * * ** * *
8231597 ATAGATGCCGAGATTTGTAAGACC-TCTAGCATAATCTATAAGATTTTCGGGTA
1 AAAGAT-TCAAGATTTGTAAGACCTTCGGGCATAATCTCTAAGATCTTCGGGTA
8231650 AAATATTTTA
Statistics
Matches: 147, Mismatches: 28, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
125 119 0.81
126 24 0.16
127 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.32
Consensus pattern (125 bp):
AAAGATTCAAGATTTGTAAGACCTTCGGGCATAATCTCTAAGATCTTCGGGTATAATCCATAAGA
CCTCCAAACAAAACATTTTAAATTTTCAAAGTATCAATGCCTCTGATACGAAGAACATTC
Found at i:8231783 original size:104 final size:103
Alignment explanation
Indices: 8231531--8231827 Score: 371
Period size: 104 Copynumber: 2.9 Consensus size: 103
8231521 GGTATAATCC
* * * * *
8231531 ATAAGACCTTTAGGCAAAACATTTTAAATTTTCAAAGTTTTAATGCCTCTGATACGAGGAATATT
1 ATAAGACCTTTAGGTAAAACATTTTAAATTTTCAAAGTTTCAATGCCTCTAATACGAAGAACATT
* *
8231596 CATAGATGCCGAGATTTGTAAGACCTCTAGCATAATCT
66 CATAGATACCGAGATTTGTAAGACCTCTAGCATAATAT
* * * *
8231634 ATAAGA-TTTTCGGGTAAAATATTTTAAATTTTTAAAGTTTCAATGCCTCTAATACGAAGAACAT
1 ATAAGACCTTT-AGGTAAAACATTTTAAATTTTCAAAGTTTCAATGCCTCTAATACGAAGAACAT
* **
8231698 TCAAAGATATTGAGATTTGTAAGACCTCTAGGCATAATAT
65 TCATAGATACCGAGATTTGTAAGACCTCTA-GCATAATAT
* * * * ** *
8231738 CTAAGACCTCTAGGTAAAACATTTTAAAATTTCAAAGTTTCAATGCCTTTAATATAAAGAGCATT
1 ATAAGACCTTTAGGTAAAACATTTTAAATTTTCAAAGTTTCAATGCCTCTAATACGAAGAACATT
*
8231803 CATAGATACCCAGATTTGTAAGACC
66 CATAGATACCGAGATTTGTAAGACC
8231828 CTGTAGGTGT
Statistics
Matches: 162, Mismatches: 29, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
102 3 0.02
103 77 0.48
104 80 0.49
105 2 0.01
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.33
Consensus pattern (103 bp):
ATAAGACCTTTAGGTAAAACATTTTAAATTTTCAAAGTTTCAATGCCTCTAATACGAAGAACATT
CATAGATACCGAGATTTGTAAGACCTCTAGCATAATAT
Found at i:8234761 original size:20 final size:21
Alignment explanation
Indices: 8234724--8234762 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
8234714 AAATTAAAGA
8234724 AAATATGTAAATAATAATATG
1 AAATATGTAAATAATAATATG
8234745 AAATA-GTAAA-AATTAATA
1 AAATATGTAAATAA-TAATA
8234763 ATTAAATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 2 0.12
20 10 0.59
21 5 0.29
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (21 bp):
AAATATGTAAATAATAATATG
Found at i:8235912 original size:24 final size:23
Alignment explanation
Indices: 8235874--8235930 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
8235864 ATTATGATTT
* * * *
8235874 ATTTATTATTCATGAATATATTC
1 ATTTAATATTAATGAACATATGC
8235897 ATTTACATATTAATGAACATATGC
1 ATTTA-ATATTAATGAACATATGC
8235921 ATTTAATATT
1 ATTTAATATT
8235931 TACGAATGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
23 10 0.34
24 19 0.66
ACGTcount: A:0.39, C:0.09, G:0.05, T:0.47
Consensus pattern (23 bp):
ATTTAATATTAATGAACATATGC
Found at i:8236967 original size:15 final size:14
Alignment explanation
Indices: 8236927--8236969 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
8236917 TAGTCATTAT
* *
8236927 TTTATGATTATTTG
1 TTTATTATTATTTA
8236941 TTTATTATTTATTTA
1 TTTATTA-TTATTTA
8236956 TTTATTCATTATTT
1 TTTATT-ATTATTT
8236970 TAATATTTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 6 0.24
15 18 0.72
16 1 0.04
ACGTcount: A:0.23, C:0.02, G:0.05, T:0.70
Consensus pattern (14 bp):
TTTATTATTATTTA
Found at i:8238150 original size:12 final size:13
Alignment explanation
Indices: 8238133--8238162 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
8238123 TTTCAATTAT
8238133 AAAAAG-AAAATA
1 AAAAAGAAAAATA
8238145 AAAAAGAAAAATA
1 AAAAAGAAAAATA
8238158 AAAAA
1 AAAAA
8238163 TTAATAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.87, C:0.00, G:0.07, T:0.07
Consensus pattern (13 bp):
AAAAAGAAAAATA
Found at i:8238874 original size:204 final size:202
Alignment explanation
Indices: 8238373--8239047 Score: 817
Period size: 204 Copynumber: 3.3 Consensus size: 202
8238363 ATTATCCAAG
* * ** * *
8238373 GATGAGAA-TCTTAGAAATTTCAAATGGTAAATT-TCCTAAGAAATCTCTAGGTGAGAAATTTAT
1 GATGA-AATTCTTAGTAATTGCAAATGGTTGATTAT-CTAAGAAATTTTTAGGTGAGAAATTTAT
8238436 TTAAATTTGTTCCAAATGATCGAAGAATTTAAATGAAATTTCAAGAAAATAGTTGTCATATCATT
64 TTAAATTTG-TCCAAATGAT-GAAGAATTTAAATGAAATTTCAAGAAAATAGTTGTCATATCATT
*
8238501 CAAAAAATAATAAAAAAATTT-TAAATTGATCAAAAATAGTGAAAAATTTAGAAAT-AAAAAATA
127 C-AAAAA-AA-AAAAAAATTTCTAAATTGATC-TAAATAGTGAAAAATTTAGAAATAAAAAAATA
*
8238564 AAAATAAATTTTGAT
188 AAAATAAATTTAGAT
** *
8238579 GATGAAATTCTTAGTAATCACAAATGGTTGATTATTTAAGAAATTTTTAGGTGAGAAATTTATTT
1 GATGAAATTCTTAGTAATTGCAAATGGTTGATTATCTAAGAAATTTTTAGGTGAGAAATTTATTT
* * *
8238644 AAATTTATCCCAAATGATGGAAGAATTTAAATGAAATTTCAAAAAAATAGTTGTCGTATCATTCA
66 AAATTTGT-CCAAATGAT-GAAGAATTTAAATGAAATTTCAAGAAAATAGTTGTCATATCATTCA
*
8238709 AAAAAAAAAAAAATTTCTAAATTGATCTAAATTGTGAAAAATTTAGAAATAAAAAAATAAAAATA
129 AAAAAAAAAAAAATTTCTAAATTGATCTAAATAGTGAAAAATTTAGAAATAAAAAAATAAAAATA
8238774 AATTTAGAT
194 AATTTAGAT
* * * * *
8238783 GATAAAATTTTTAGTAATTGCAAATTGTTAATTATCTAAGAAATTTTTTGGTGAGAAATTTATTT
1 GATGAAATTCTTAGTAATTGCAAATGGTTGATTATCTAAGAAATTTTTAGGTGAGAAATTTATTT
* * * *
8238848 AAATTTGTCATAAATGGTGAAAGAATTTAAATGAAATTTTAAGAAAACAGTTGTCATATCATTTA
66 AAATTTGTC-CAAATGATG-AAGAATTTAAATGAAATTTCAAGAAAATAGTTGTCATATCA-TT-
*
8238913 AAAAAATAAAAAAAAAAATGAAAATTCTAAATTGA-CTCAAATAGTGAAAAATTTAGAAATAAAA
127 --CAAA-AAAAAAAAAAAT-----TTCTAAATTGATCT-AAATAGTGAAAAATTTAGAAATAAAA
* *
8238977 AAAT-AAAAGAAA-TTCGAT
183 AAATAAAAATAAATTTAGAT
* * *
8238995 AATGAAATTCTTAGTAAATG-TAATGGTTGATTATCTAAGAAATTTTTAGGTGA
1 GATGAAATTCTTAGTAATTGCAAATGGTTGATTATCTAAGAAATTTTTAGGTGA
8239048 AAAGATATTT
Statistics
Matches: 409, Mismatches: 42, Indels: 31
0.85 0.09 0.06
Matches are distributed among these distances:
203 33 0.08
204 141 0.34
205 10 0.02
206 110 0.27
207 1 0.00
208 3 0.01
209 12 0.03
211 29 0.07
212 21 0.05
213 9 0.02
214 40 0.10
ACGTcount: A:0.48, C:0.06, G:0.12, T:0.34
Consensus pattern (202 bp):
GATGAAATTCTTAGTAATTGCAAATGGTTGATTATCTAAGAAATTTTTAGGTGAGAAATTTATTT
AAATTTGTCCAAATGATGAAGAATTTAAATGAAATTTCAAGAAAATAGTTGTCATATCATTCAAA
AAAAAAAAAAATTTCTAAATTGATCTAAATAGTGAAAAATTTAGAAATAAAAAAATAAAAATAAA
TTTAGAT
Done.