Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 45 of 117
Found at i:8241181 original size:215 final size:212
Alignment explanation
Indices: 8240689--8241498 Score: 1090
Period size: 215 Copynumber: 3.8 Consensus size: 212
8240679 GACAATTATC
* * * * * * * *
8240689 CAATGATGAGAA-TCTTAGAAATTTCAAATTGTAAATTTTCTAAAAAATCTCTAGGTGAGAAATT
1 CAATGATGA-AATTCTTAGTAATTGCAAATGGTTAATTATCTAAGAAATTTTTAGGTGAGAAATT
* *
8240753 TATTTAAATTTGTTCCAAATGAT-AGAAGAATTTAAATGAAATTTC-AAGAAAATAGTTGTCATA
65 TATTTAAATTTGTCCCAAACGATGA-AAGAATTTAAATGAAATTTCAAAGAAAATAGTTGTCATA
** * *
8240816 TCATTC-AAAAAAT----AATTAAAAAAATTTTAAATTGATCCAAATAGTGAAAAATTTAGAAAT
129 TCATTCAAAAAAATAAAAAAAAAAAAAAATTCTAAATTGACCCAAATAGTGAAAAATTTAGAAAT
*
8240876 -AAAAAATAAAAAAATTTT
194 AAAAAAATAAAAAAAATTT
** * *
8240894 TGATGATGAAATTCTTAGTAATTGCAAATGGTTGATTATTTAAGAAATTTTTAGGTGAGAAATTT
1 CAATGATGAAATTCTTAGTAATTGCAAATGGTTAATTATCTAAGAAATTTTTAGGTGAGAAATTT
*
8240959 ATTTAAATTTGTCCCAAACGATGGAAGAATTTAAATGAAATTTCAAAG-AAATAGTTGTCATATC
66 ATTTAAATTTGTCCCAAACGATGAAAGAATTTAAATGAAATTTCAAAGAAAATAGTTGTCATATC
*
8241023 ATTCAAAAAAATAAAAAAAACCAAAAAAAATTCTAAATTGACCCAAATTGTGAAAAATTTAGAAA
131 ATTCAAAAAAAT-AAAAAAA--AAAAAAAATTCTAAATTGACCCAAATAGTGAAAAATTTAGAAA
8241088 TAAAAAAATAAAAATAAATTT
193 TAAAAAAATAAAAA-AAATTT
* *
8241109 CAATGATGAAATTTTTAGTAATTGCAAATTGTTAATTATCTAAGAAATTTTTCA-GTGA-AAAGT
1 CAATGATGAAATTCTTAGTAATTGCAAATGGTTAATTATCTAAGAAATTTTT-AGGTGAGAAA-T
** * * *
8241172 TTATTTAAATTTGTCATAAATGATGAAAGAATTTAAATGAAATTT-TAAGAAAATAGTTTTCATA
64 TTATTTAAATTTGTCCCAAACGATGAAAGAATTTAAATGAAATTTCAAAGAAAATAGTTGTCATA
* *
8241236 TCATTCAAAAAAATAATAAAAAAAAAAAATTCTAAATTGACTCAAATAGTGAAAAATTTAGAAAT
129 TCATTCAAAAAAATAAAAAAAAAAAAAAATTCTAAATTGACCCAAATAGTGAAAAATTTAGAAAT
8241301 AAAAAAATAAAAAAAATTT
194 AAAAAAATAAAAAAAATTT
** * * *
8241320 TGATAATGAAATTCTTAGTAATTGCAAATGGTTGATTATTTAAGAAATTTTTAGGTGAGAAATTT
1 CAATGATGAAATTCTTAGTAATTGCAAATGGTTAATTATCTAAGAAATTTTTAGGTGAGAAATTT
8241385 ATTTAAATTTGTCCCAAACGATGAAAGAATTTAAATGAAATTTCAAA-AAAATAGTTGTCATATC
66 ATTTAAATTTGTCCCAAACGATGAAAGAATTTAAATGAAATTTCAAAGAAAATAGTTGTCATATC
8241449 ATTCAAAAAAAAAATAAAAAAAAGAAAAAAAATTCTAAATTGACCCAAAT
131 ATTC---AAAAAAAT-AAAAAAA-AAAAAAAATTCTAAATTGACCCAAAT
8241499 TCTTAGTGAA
Statistics
Matches: 531, Mismatches: 50, Indels: 37
0.86 0.08 0.06
Matches are distributed among these distances:
204 2 0.00
205 110 0.21
206 10 0.02
210 1 0.00
211 120 0.23
212 60 0.11
213 40 0.08
214 32 0.06
215 130 0.24
216 26 0.05
ACGTcount: A:0.50, C:0.07, G:0.11, T:0.33
Consensus pattern (212 bp):
CAATGATGAAATTCTTAGTAATTGCAAATGGTTAATTATCTAAGAAATTTTTAGGTGAGAAATTT
ATTTAAATTTGTCCCAAACGATGAAAGAATTTAAATGAAATTTCAAAGAAAATAGTTGTCATATC
ATTCAAAAAAATAAAAAAAAAAAAAAATTCTAAATTGACCCAAATAGTGAAAAATTTAGAAATAA
AAAAATAAAAAAAATTT
Found at i:8241391 original size:426 final size:420
Alignment explanation
Indices: 8240689--8241499 Score: 1276
Period size: 426 Copynumber: 1.9 Consensus size: 420
8240679 GACAATTATC
* *
8240689 CAATGATGAGAATCTTAGAAATTTCAAATTGTAAATTTTCTAAAAAATCTCTAGGTGAGAAATTT
1 CAATGATGAGAATCTTAGAAATTGCAAATTGTAAATTATCTAAAAAATCTCTAGGTGAGAAATTT
8240754 ATTTAAATTTGTTCCAAATGATAGAAGAATTTAAATGAAATTTCAAGAAAATAGTTGTCATATCA
66 ATTTAAATTTGTTCCAAATGATAGAAGAATTTAAATGAAATTTCAAGAAAATAGTTGTCATATCA
* *
8240819 TTCAAAAAATAATTAAAAAAATTTTAAATTGATCCAAATAGTGAAAAATTTAGAAATAAAAAATA
131 TTCAAAAAATAATAAAAAAAATTCTAAATTGATCCAAATAGTGAAAAATTTAGAAATAAAAAATA
* *
8240884 AAAAAATTTTTGATGATGAAATTCTTAGTAATTGCAAATGGTTGATTATTTAAGAAATTTTTAGG
196 AAAAAAATTTTGATAATGAAATTCTTAGTAATTGCAAATGGTTGATTATTTAAGAAATTTTTAGG
* *
8240949 TGAGAAATTTATTTAAATTTGTCCCAAACGATGGAAGAATTTAAATGAAATTTCAAAGAAATAGT
261 TGAGAAATTTATTTAAATTTGTCCCAAACGATGAAAGAATTTAAATGAAATTTCAAAAAAATAGT
8241014 TGTCATATCATTC-AAAAAAATAAAAAAAACCAAAAAAAATTCTAAATTGACCCAAATTGTGAAA
326 TGTCATATCATTCAAAAAAAATAAAAAAAA-CAAAAAAAATTCTAAATTGACCCAAATTGTGAAA
8241078 AATTTAGAAATAAAAAAATAAAAATAAATTT
390 AATTTAGAAATAAAAAAATAAAAATAAATTT
* * * * * *
8241109 CAATGATGA-AATTTTTAGTAATTGCAAATTGTTAATTATCTAAGAAATTTTTCA-GTGA-AAAG
1 CAATGATGAGAA-TCTTAGAAATTGCAAATTGTAAATTATCTAAAAAATCTCT-AGGTGAGAAA-
* * *
8241171 TTTATTTAAATTTG-TCATAAATGAT-GAAAGAATTTAAATGAAATTTTAAGAAAATAGTTTTCA
63 TTTATTTAAATTTGTTC-CAAATGATAG-AAGAATTTAAATGAAATTTCAAGAAAATAGTTGTCA
8241234 TATCATTCAAAAAAATAATAAAAAAAAAAAATTCTAAATTGA-CTCAAATAGTGAAAAATTTAGA
126 TATCATTC-AAAAAATAAT----AAAAAAAATTCTAAATTGATC-CAAATAGTGAAAAATTTAGA
8241298 AATAAAAAAATAAAAAAAATTTTGATAATGAAATTCTTAGTAATTGCAAATGGTTGATTATTTAA
185 AAT-AAAAAATAAAAAAAATTTTGATAATGAAATTCTTAGTAATTGCAAATGGTTGATTATTTAA
8241363 GAAATTTTTAGGTGAGAAATTTATTTAAATTTGTCCCAAACGATGAAAGAATTTAAATGAAATTT
249 GAAATTTTTAGGTGAGAAATTTATTTAAATTTGTCCCAAACGATGAAAGAATTTAAATGAAATTT
*
8241428 CAAAAAAATAGTTGTCATATCATTCAAAAAAAAAATAAAAAAAAGAAAAAAAATTCTAAATTGAC
314 CAAAAAAATAGTTGTCATATCATTC--AAAAAAAATAAAAAAAACAAAAAAAATTCTAAATTGAC
8241493 CCAAATT
377 CCAAATT
8241500 CTTAGTGAAT
Statistics
Matches: 358, Mismatches: 18, Indels: 22
0.90 0.05 0.06
Matches are distributed among these distances:
419 8 0.02
420 108 0.30
421 11 0.03
424 1 0.00
425 40 0.11
426 147 0.41
428 27 0.08
429 16 0.04
ACGTcount: A:0.49, C:0.07, G:0.11, T:0.33
Consensus pattern (420 bp):
CAATGATGAGAATCTTAGAAATTGCAAATTGTAAATTATCTAAAAAATCTCTAGGTGAGAAATTT
ATTTAAATTTGTTCCAAATGATAGAAGAATTTAAATGAAATTTCAAGAAAATAGTTGTCATATCA
TTCAAAAAATAATAAAAAAAATTCTAAATTGATCCAAATAGTGAAAAATTTAGAAATAAAAAATA
AAAAAAATTTTGATAATGAAATTCTTAGTAATTGCAAATGGTTGATTATTTAAGAAATTTTTAGG
TGAGAAATTTATTTAAATTTGTCCCAAACGATGAAAGAATTTAAATGAAATTTCAAAAAAATAGT
TGTCATATCATTCAAAAAAAATAAAAAAAACAAAAAAAATTCTAAATTGACCCAAATTGTGAAAA
ATTTAGAAATAAAAAAATAAAAATAAATTT
Found at i:8241410 original size:211 final size:211
Alignment explanation
Indices: 8240740--8241476 Score: 1100
Period size: 211 Copynumber: 3.5 Consensus size: 211
8240730 AAAAAATCTC
* *
8240740 TAGGTGAGAAATTTATTTAAATTTGTTCCAAATGAT-AGAAGAATTTAAATGAAATTTCAAGAAA
1 TAGGTGAGAAATTTATTTAAATTTGTCCCAAACGATGA-AAGAATTTAAATGAAATTTCAAGAAA
* *
8240804 ATAGTTGTCATATCATTC-AAAAAATAAT----TAAAAAAATTTTAAATTGA-TCCAAATAGTGA
65 ATAGTTGTCATATCATTCAAAAAAATAATAAAAAAAAAAAATTCTAAATTGACT-CAAATAGTGA
*
8240863 AAAATTTAGAAAT-AAAAAATAAAAAAATTTTTGATGATGAAATTCTTAGTAATTGCAAATGGTT
129 AAAATTTAGAAATAAAAAAATAAAAAAAATTTTGATGATGAAATTCTTAGTAATTGCAAATGGTT
8240927 GATTATTTAAGAAATTTT
194 GATTATTTAAGAAATTTT
*
8240945 TAGGTGAGAAATTTATTTAAATTTGTCCCAAACGATGGAAGAATTTAAATGAAATTTCAA-AGAA
1 TAGGTGAGAAATTTATTTAAATTTGTCCCAAACGATGAAAGAATTTAAATGAAATTTCAAGA-AA
* * *
8241009 ATAGTTGTCATATCATTCAAAAAAATAAAAAAAACCAAAAAAAATTCTAAATTGACCCAAATTGT
65 ATAGTTGTCATATCATTCAAAAAAAT-AATAAAA--AAAAAAAATTCTAAATTGACTCAAATAGT
** * *
8241074 GAAAAATTTAGAAATAAAAAAATAAAAATAAATTTCAATGATGAAATTTTTAGTAATTGCAAATT
127 GAAAAATTTAGAAATAAAAAAATAAAAA-AAATTTTGATGATGAAATTCTTAGTAATTGCAAATG
* *
8241139 GTTAATTATCTAAGAAATTTT
191 GTTGATTATTTAAGAAATTTT
** * *
8241160 TCA-GTGA-AAAGTTTATTTAAATTTGTCATAAATGATGAAAGAATTTAAATGAAATTTTAAGAA
1 T-AGGTGAGAAA-TTTATTTAAATTTGTCCCAAACGATGAAAGAATTTAAATGAAATTTCAAGAA
*
8241223 AATAGTTTTCATATCATTCAAAAAAATAATAAAAAAAAAAAATTCTAAATTGACTCAAATAGTGA
64 AATAGTTGTCATATCATTCAAAAAAATAATAAAAAAAAAAAATTCTAAATTGACTCAAATAGTGA
*
8241288 AAAATTTAGAAATAAAAAAATAAAAAAAATTTTGATAATGAAATTCTTAGTAATTGCAAATGGTT
129 AAAATTTAGAAATAAAAAAATAAAAAAAATTTTGATGATGAAATTCTTAGTAATTGCAAATGGTT
8241353 GATTATTTAAGAAATTTT
194 GATTATTTAAGAAATTTT
*
8241371 TAGGTGAGAAATTTATTTAAATTTGTCCCAAACGATGAAAGAATTTAAATGAAATTTCAAAAAAA
1 TAGGTGAGAAATTTATTTAAATTTGTCCCAAACGATGAAAGAATTTAAATGAAATTTCAAGAAAA
*
8241436 TAGTTGTCATATCATTCAAAAAAAAAATAAAAAAAAGAAAA
66 TAGTTGTCATATCATTCAAAAAAATAATAAAAAAAA-AAAA
8241477 AAAATTCTAA
Statistics
Matches: 475, Mismatches: 38, Indels: 31
0.87 0.07 0.06
Matches are distributed among these distances:
204 1 0.00
205 76 0.16
206 7 0.01
207 2 0.00
210 1 0.00
211 138 0.29
212 62 0.13
213 39 0.08
214 21 0.04
215 126 0.27
216 2 0.00
ACGTcount: A:0.50, C:0.06, G:0.11, T:0.33
Consensus pattern (211 bp):
TAGGTGAGAAATTTATTTAAATTTGTCCCAAACGATGAAAGAATTTAAATGAAATTTCAAGAAAA
TAGTTGTCATATCATTCAAAAAAATAATAAAAAAAAAAAATTCTAAATTGACTCAAATAGTGAAA
AATTTAGAAATAAAAAAATAAAAAAAATTTTGATGATGAAATTCTTAGTAATTGCAAATGGTTGA
TTATTTAAGAAATTTT
Found at i:8242232 original size:16 final size:15
Alignment explanation
Indices: 8242207--8242241 Score: 61
Period size: 16 Copynumber: 2.3 Consensus size: 15
8242197 CTCTTTTCCT
8242207 TTTGTTTCTGGTGTG
1 TTTGTTTCTGGTGTG
8242222 TTTGATTTCTGGTGTG
1 TTTG-TTTCTGGTGTG
8242238 TTTG
1 TTTG
8242242 GTTGTTGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.03, C:0.06, G:0.31, T:0.60
Consensus pattern (15 bp):
TTTGTTTCTGGTGTG
Found at i:8246938 original size:40 final size:40
Alignment explanation
Indices: 8246894--8246974 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
8246884 ATTATTGAAG
8246894 TTGCCAAAGTAGGGAACACGATTGAAATTAACATGAAAAC
1 TTGCCAAAGTAGGGAACACGATTGAAATTAACATGAAAAC
**
8246934 TTGCCAAAGTAGGGAACGTGATTGAAATTAACATGAAAAC
1 TTGCCAAAGTAGGGAACACGATTGAAATTAACATGAAAAC
8246974 T
1 T
8246975 ATGTATTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.43, C:0.14, G:0.21, T:0.22
Consensus pattern (40 bp):
TTGCCAAAGTAGGGAACACGATTGAAATTAACATGAAAAC
Found at i:8248626 original size:34 final size:33
Alignment explanation
Indices: 8248588--8248699 Score: 127
Period size: 34 Copynumber: 3.3 Consensus size: 33
8248578 AAAAATATAG
8248588 CTAATTTAGCGGCATTTTTATGATATAAATGCCA
1 CTAATTTAGCGGCATTTTTATGATA-AAATGCCA
* * *
8248622 CTAATTTAGCAGCATTTTTACGATAAGAATGCTA
1 CTAATTTAGCGGCATTTTTATGATAA-AATGCCA
* *
8248656 CTAATTTTAGTGGCA-TTTTATGGTACAAATGCCA
1 CTAA-TTTAGCGGCATTTTTATGATA-AAATGCCA
8248690 CTTAATTTAG
1 C-TAATTTAG
8248700 AAATTAGTGG
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
33 1 0.02
34 53 0.80
35 12 0.18
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.38
Consensus pattern (33 bp):
CTAATTTAGCGGCATTTTTATGATAAAATGCCA
Found at i:8260113 original size:189 final size:184
Alignment explanation
Indices: 8259610--8260162 Score: 515
Period size: 189 Copynumber: 2.9 Consensus size: 184
8259600 AAACGCCTTT
* * * *
8259610 AAAGCAATTTATTAAAAGCATTTTTTGCAAAAAATACCTTCAATAATTCCCTCTATTTTTATCAA
1 AAAGAAATTTATT-AAAGCTTTTTTTGCAAAAAATACCTTCAATAATACCCTCCATTTTTATCAA
* * * * * *
8259675 ATAAATATCAGTAAAGGTGATTTTCTACTAAAAACGCCTTCAATAATCTTTTTAAATTTTGACGA
65 AGAAATATCAGTGAAGGT-ATTTTCTACCAAAAACACCTTCAATAATC-TCTTAAATTTTGATGA
8259740 TGAGATTATTATAGGTATTTTTTTACTAAAAACT-CCTTCACTAATCTCCTCAAAATTTTTG
128 -GAGATTATTATAGGTA--TTTTTACT-AAAA-TGCCTTCACTAATCTCCTCAAAATTTTTG
* * * * *
8259801 -AAGAAATTTATTAAAGGTGTTTTTTGCAAAAAATGCTTTCAATAATACCATCCATTTCTAGT-A
1 AAAGAAATTTATTAAAGCT-TTTTTTGCAAAAAATACCTTCAATAATACCCTCCATTTTTA-TCA
** * * * **
8259864 GGGGAATACCAGTGAAGGCAGTTTTCTACCAAAAACATATTCAATAATCCTCTTAAATTTTGATG
64 AAGAAATATCAGTGAAGGTA-TTTTCTACCAAAAACACCTTCAATAAT-CTCTTAAATTTTGATG
* * **
8259929 AGAAGATTATTATAGGCATTTTCTACTACAAATGCCTTTACTAAT-TCCCTC-ATTTTTTTG
127 AG-AGATTATTATAGGTATTTT-TACTA-AAATGCCTTCACTAATCT-CCTCAAAATTTTTG
* * * *
8259989 AAAG-AATTTATTGAAAGCTTTTTTTGCATAATACACCTTCAATAATCCTCCTCCATTTTTATCA
1 AAAGAAATTTATT-AAAGCTTTTTTTGCAAAAAATACCTTCAATAATAC-CCTCCATTTTTATCA
* * * * **
8260053 TAGAAATATTAGTGAAGGTATTTTTCTACCAAAAATACCTTCACTAATCTGCCAAAATTTTGATG
64 AAGAAATATCAGTGAAGGTA-TTTTCTACCAAAAACACCTTCAATAATCT-CTTAAATTTTGATG
* * *
8260118 TTGAGATTATTATAGGTGTTTTTGACTAAAATGCCTTCAATAATC
127 -AGAGATTATTATAGGTATTTTT-ACTAAAATGCCTTCACTAATC
8260163 CTCGTAATAT
Statistics
Matches: 292, Mismatches: 53, Indels: 36
0.77 0.14 0.09
Matches are distributed among these distances:
188 63 0.22
189 116 0.40
190 111 0.38
191 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (184 bp):
AAAGAAATTTATTAAAGCTTTTTTTGCAAAAAATACCTTCAATAATACCCTCCATTTTTATCAAA
GAAATATCAGTGAAGGTATTTTCTACCAAAAACACCTTCAATAATCTCTTAAATTTTGATGAGAG
ATTATTATAGGTATTTTTACTAAAATGCCTTCACTAATCTCCTCAAAATTTTTG
Found at i:8261369 original size:19 final size:19
Alignment explanation
Indices: 8261343--8261392 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
8261333 TGTGTTTTTG
*
8261343 TATAGTTTGGTTTAAATAT
1 TATAGTTTGCTTTAAATAT
*
8261362 TGTAGTTTGCTTTAAATAT
1 TATAGTTTGCTTTAAATAT
8261381 TATAGTTTGCTT
1 TATAGTTTGCTT
8261393 AATGGTATTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.26, C:0.04, G:0.16, T:0.54
Consensus pattern (19 bp):
TATAGTTTGCTTTAAATAT
Found at i:8261429 original size:28 final size:28
Alignment explanation
Indices: 8261385--8261452 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
8261375 AAATATTATA
* * *
8261385 GTTTGCTTAATGGTATTGTATGATACTT
1 GTTTGCTGAATGATATTGTATGATACTG
8261413 GTTTGCTGAATGATATTGTATGATACTG
1 GTTTGCTGAATGATATTGTATGATACTG
*
8261441 GTTTGTTGAATG
1 GTTTGCTGAATG
8261453 GTTTGCTAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.22, C:0.06, G:0.25, T:0.47
Consensus pattern (28 bp):
GTTTGCTGAATGATATTGTATGATACTG
Found at i:8264967 original size:63 final size:61
Alignment explanation
Indices: 8264753--8264966 Score: 186
Period size: 63 Copynumber: 3.4 Consensus size: 61
8264743 TCCTAGAATG
* * * *
8264753 GAATATTGAAGGCAATTTTGACCATAAATGCCTTCAATAATGCTCT-AAAAA-ATTTATAAA
1 GAATATTGAAGGC-ATTTTGGCCAAAAATGCCTTCAATAATCCTCTCAAAAATTTTTATAAA
* * * *
8264813 GGAATATTGAAGGCATTTATGGCCAAAAATGCCTTCAATAATCTTATC-TAAATTTTGT-TGAGG
1 -GAATATTGAAGGCATTT-TGGCCAAAAATGCCTTCAATAATCCTCTCAAAAATTTT-TAT-A-A
*
8264876 G
61 A
* * *
8264877 GATTATTGAAGGCATTCTTAGG-CAAAAATACCTTCAATAATCCTCTCAAAAATTTTTATATA
1 GAATATTGAAGGCATT-TT-GGCCAAAAATGCCTTCAATAATCCTCTCAAAAATTTTTATAAA
* *
8264939 GAGTATTGAAGGCATATTTGGACAAAAA
1 GAATATTGAAGGCAT-TTTGGCCAAAAA
8264967 ACGCATTTAA
Statistics
Matches: 124, Mismatches: 17, Indels: 23
0.76 0.10 0.14
Matches are distributed among these distances:
60 4 0.03
61 41 0.33
62 25 0.20
63 43 0.35
64 11 0.09
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (61 bp):
GAATATTGAAGGCATTTTGGCCAAAAATGCCTTCAATAATCCTCTCAAAAATTTTTATAAA
Found at i:8266608 original size:28 final size:29
Alignment explanation
Indices: 8266556--8266637 Score: 87
Period size: 29 Copynumber: 2.8 Consensus size: 29
8266546 ATATGTTAAG
8266556 TAAATATAAAAATAAAATAATAGAAT-AA
1 TAAATATAAAAATAAAATAATAGAATAAA
* *
8266584 TAAATATAAAACTTATAATAA-AGAATAAA
1 TAAATATAAAA-ATAAAATAATAGAATAAA
* *
8266613 TAAAAATAAATAATGAAAATTATAG
1 TAAATATAAA-AAT-AAAATAATAG
8266638 TTTAAAGTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
28 16 0.37
29 19 0.44
30 6 0.14
31 2 0.05
ACGTcount: A:0.67, C:0.01, G:0.05, T:0.27
Consensus pattern (29 bp):
TAAATATAAAAATAAAATAATAGAATAAA
Found at i:8267852 original size:98 final size:98
Alignment explanation
Indices: 8267683--8267875 Score: 316
Period size: 98 Copynumber: 2.0 Consensus size: 98
8267673 NNNNNTACTT
* * *
8267683 ATATATTGCAGTTTGGGGAAGAAAGAAATTAAAGATCTCAACTTTAGCTTACTGTTGTTATTATC
1 ATATATTGCAGTTTGGGGAAGAAAGAAATTAAAGATCTCAACTTAAGCTTACTATTATTATTATC
*
8267748 CTTGTGTAGGTTAGACATGACATGATTTTACAC
66 CTTGTGTAAGTTAGACATGACATGATTTTACAC
*
8267781 ATATATTGCAGTTTGGGGAAGAAAGAAATTAAAGATCTCAACTTAAGCTTA-TCATTATTATTGT
1 ATATATTGCAGTTTGGGGAAGAAAGAAATTAAAGATCTCAACTTAAGCTTACT-ATTATTATTAT
*
8267845 CCTTGTGTAAGTTCGACATGACATGATTTTA
65 CCTTGTGTAAGTTAGACATGACATGATTTTA
8267876 TATTTTTTCA
Statistics
Matches: 88, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
97 1 0.01
98 87 0.99
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.37
Consensus pattern (98 bp):
ATATATTGCAGTTTGGGGAAGAAAGAAATTAAAGATCTCAACTTAAGCTTACTATTATTATTATC
CTTGTGTAAGTTAGACATGACATGATTTTACAC
Found at i:8271752 original size:3 final size:3
Alignment explanation
Indices: 8271744--8271790 Score: 58
Period size: 3 Copynumber: 15.7 Consensus size: 3
8271734 GGGTTTGGAT
* * * *
8271744 TTA TTA TTA TTA TTA TTA TCA TCA TCA TCA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8271791 TTTCTTACCT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:8275514 original size:21 final size:21
Alignment explanation
Indices: 8275490--8275563 Score: 58
Period size: 21 Copynumber: 3.2 Consensus size: 21
8275480 ATCAAATACG
8275490 CAAAATAAACCATTATACACA
1 CAAAATAAACCATTATACACA
* * *
8275511 CAAAGTCAAAAACATAGATATCAGCAA
1 CAAAAT--AAACCAT-TATA-CA-C-A
*
8275538 CAAAATAAACCATTACACACA
1 CAAAATAAACCATTATACACA
8275559 CAAAA
1 CAAAA
8275564 AGTAAAAAAC
Statistics
Matches: 40, Mismatches: 7, Indels: 12
0.68 0.12 0.20
Matches are distributed among these distances:
21 11 0.28
22 1 0.03
23 8 0.20
24 5 0.12
25 8 0.20
26 1 0.03
27 6 0.15
ACGTcount: A:0.58, C:0.23, G:0.04, T:0.15
Consensus pattern (21 bp):
CAAAATAAACCATTATACACA
Found at i:8275561 original size:48 final size:49
Alignment explanation
Indices: 8275490--8275587 Score: 153
Period size: 50 Copynumber: 2.0 Consensus size: 49
8275480 ATCAAATACG
* * *
8275490 CAAAATAAACCATTATACACAC-AAAGTCAAAAACATAGATATCAGCAA
1 CAAAATAAACCATTACACACACAAAAGTAAAAAACATAGAGATCAGCAA
8275538 CAAAATAAACCATTACACACACAAAAAGTAAAAAACATAGAGATCAGCAA
1 CAAAATAAACCATTACACACAC-AAAAGTAAAAAACATAGAGATCAGCAA
8275588 TATTAAAGGG
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
48 21 0.47
50 24 0.53
ACGTcount: A:0.58, C:0.20, G:0.07, T:0.14
Consensus pattern (49 bp):
CAAAATAAACCATTACACACACAAAAGTAAAAAACATAGAGATCAGCAA
Found at i:8278481 original size:29 final size:29
Alignment explanation
Indices: 8278449--8278544 Score: 70
Period size: 29 Copynumber: 3.2 Consensus size: 29
8278439 AGTCATTTAC
*
8278449 AAATTAATAGACAAAAAATGTGAATTTTT
1 AAATTAATAGAAAAAAAATGTGAATTTTT
* * * **
8278478 AAATTATTTA-AAATAATTATAAGGT-CATTTAC
1 AAATTA-ATAGAAA-AA--A-AATGTGAATTTTT
*
8278510 AAATTAATAGATAAAAAATGTGAATTTTT
1 AAATTAATAGAAAAAAAATGTGAATTTTT
8278539 AAATTA
1 AAATTA
8278545 TTCTTGATTT
Statistics
Matches: 48, Mismatches: 12, Indels: 14
0.65 0.16 0.19
Matches are distributed among these distances:
28 4 0.08
29 19 0.40
30 4 0.08
31 4 0.08
32 13 0.27
33 4 0.08
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (29 bp):
AAATTAATAGAAAAAAAATGTGAATTTTT
Found at i:8278492 original size:61 final size:61
Alignment explanation
Indices: 8278426--8278546 Score: 224
Period size: 61 Copynumber: 2.0 Consensus size: 61
8278416 AAATAGACAA
8278426 AAAATAATTATAAAGTCATTTACAAATTAATAGACAAAAAATGTGAATTTTTAAATTATTT
1 AAAATAATTATAAAGTCATTTACAAATTAATAGACAAAAAATGTGAATTTTTAAATTATTT
* *
8278487 AAAATAATTATAAGGTCATTTACAAATTAATAGATAAAAAATGTGAATTTTTAAATTATT
1 AAAATAATTATAAAGTCATTTACAAATTAATAGACAAAAAATGTGAATTTTTAAATTATT
8278547 CTTGATTTCA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.50, C:0.04, G:0.07, T:0.38
Consensus pattern (61 bp):
AAAATAATTATAAAGTCATTTACAAATTAATAGACAAAAAATGTGAATTTTTAAATTATTT
Found at i:8278709 original size:15 final size:16
Alignment explanation
Indices: 8278676--8278710 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
8278666 CAAAAATAAA
*
8278676 AAAAGAAAAAAGAGTG
1 AAAAGAAAAAAGAGGG
8278692 AAAAGAAAAAA-AGGG
1 AAAAGAAAAAAGAGGG
8278707 AAAA
1 AAAA
8278711 ATAATTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (16 bp):
AAAAGAAAAAAGAGGG
Found at i:8279160 original size:16 final size:15
Alignment explanation
Indices: 8279135--8279169 Score: 61
Period size: 16 Copynumber: 2.3 Consensus size: 15
8279125 CTCTTTTCCT
8279135 TTTGTTTCTGGTGTG
1 TTTGTTTCTGGTGTG
8279150 TTTGATTTCTGGTGTG
1 TTTG-TTTCTGGTGTG
8279166 TTTG
1 TTTG
8279170 GTTGTTGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.03, C:0.06, G:0.31, T:0.60
Consensus pattern (15 bp):
TTTGTTTCTGGTGTG
Found at i:8284819 original size:12 final size:13
Alignment explanation
Indices: 8284803--8284850 Score: 55
Period size: 12 Copynumber: 3.7 Consensus size: 13
8284793 ATATTTAAAA
8284803 TTTTTAATCACA-
1 TTTTTAATCACAC
8284815 TTTTT-ATCACAC
1 TTTTTAATCACAC
*
8284827 TTTTTAAATACACAT
1 TTTTT-AAT-CACAC
8284842 TTTTTAATC
1 TTTTTAATC
8284851 CTAAATTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
11 6 0.19
12 10 0.32
13 1 0.03
14 5 0.16
15 9 0.29
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.52
Consensus pattern (13 bp):
TTTTTAATCACAC
Found at i:8286219 original size:97 final size:97
Alignment explanation
Indices: 8286060--8286239 Score: 297
Period size: 97 Copynumber: 1.9 Consensus size: 97
8286050 CCCTTATATA
* ** *
8286060 TTGCAGTTTGGGGAAGAAAGAAACTAAAGATCTCTACTTAAGCTTATTGTTGTTATTGTCCTTGT
1 TTGCAGTTTGGGGAAGAAAGAAACTAAAGATCTCAACTTAAGCTTACCGTTATTATTGTCCTTGT
8286125 GTAAGTTAGACATGACATTTTACAATTATACC
66 GTAAGTTAGACATGACATTTTACAATTATACC
*
8286157 TTGCAGTTTGGGGAAGAAAGAAATTAAAGATCTCAACTTAAGCTTACCGTTATTATTGTCCTTGT
1 TTGCAGTTTGGGGAAGAAAGAAACTAAAGATCTCAACTTAAGCTTACCGTTATTATTGTCCTTGT
* *
8286222 GTAAGTTCGGCATGACAT
66 GTAAGTTAGACATGACAT
8286240 GATTTTACAT
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
97 76 1.00
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.36
Consensus pattern (97 bp):
TTGCAGTTTGGGGAAGAAAGAAACTAAAGATCTCAACTTAAGCTTACCGTTATTATTGTCCTTGT
GTAAGTTAGACATGACATTTTACAATTATACC
Found at i:8294122 original size:23 final size:23
Alignment explanation
Indices: 8294096--8294142 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
8294086 ATTTAATCAT
8294096 ATAAAAATACTAAAAAT-AAATAA
1 ATAAAAATAC-AAAAATAAAATAA
*
8294119 ATAAAAATACAAGAATAAAATAA
1 ATAAAAATACAAAAATAAAATAA
8294142 A
1 A
8294143 ATACCAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.23
23 17 0.77
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.19
Consensus pattern (23 bp):
ATAAAAATACAAAAATAAAATAA
Found at i:8295124 original size:16 final size:15
Alignment explanation
Indices: 8295103--8295141 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
8295093 TAAACCCAAA
*
8295103 AATAAATAAATAACT
1 AATAAATAAATAAAT
*
8295118 AAGTAAATAGATAAAT
1 AA-TAAATAAATAAAT
8295134 AATAAATA
1 AATAAATA
8295142 TAAAATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.67, C:0.03, G:0.05, T:0.26
Consensus pattern (15 bp):
AATAAATAAATAAAT
Found at i:8297046 original size:100 final size:100
Alignment explanation
Indices: 8296869--8297071 Score: 293
Period size: 100 Copynumber: 2.0 Consensus size: 100
8296859 TAGGTTTTCA
* * *
8296869 ACACTTATATATTGCAATTTGGGGAAGAAAGAAACTAAAGATCTCTAATTAAGCTTACCGGTGTT
1 ACACTTATATATTACAATTTGGGGAAGAAAGAAACTAAAGATCTCTAATTAAGCTTACCAGTATT
*
8296934 ATTGTCCTTGTGTAAGTT-AGACATGACATGATTTT
66 ATTGTCCATGTGTAAGTTCA-ACATGACATGATTTT
* * * * *
8296969 ACACTTATATATTATAGTTTGGGGAAGAAAGAAATTAAAGATCTC-AACTTAAGCTTACTATTAT
1 ACACTTATATATTACAATTTGGGGAAGAAAGAAACTAAAGATCTCTAA-TTAAGCTTACCAGTAT
8297033 TATTGTCCATGTGTAAGTTCAACATGACATGATTTT
65 TATTGTCCATGTGTAAGTTCAACATGACATGATTTT
8297069 ACA
1 ACA
8297072 TTTTTTCACT
Statistics
Matches: 92, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
99 2 0.02
100 89 0.97
101 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (100 bp):
ACACTTATATATTACAATTTGGGGAAGAAAGAAACTAAAGATCTCTAATTAAGCTTACCAGTATT
ATTGTCCATGTGTAAGTTCAACATGACATGATTTT
Found at i:8298696 original size:24 final size:25
Alignment explanation
Indices: 8298669--8298742 Score: 84
Period size: 25 Copynumber: 3.1 Consensus size: 25
8298659 TGAAAGAAGA
8298669 AAGAAAAAATACCAAA-AAAATACT
1 AAGAAAAAATACCAAAGAAAATACT
* * *
8298693 AAG-AAAAATACTAAATAAAATA-A
1 AAGAAAAAATACCAAAGAAAATACT
8298716 ATAGAAAAAATACCAAAGAAAA-ACT
1 A-AGAAAAAATACCAAAGAAAATACT
8298741 AA
1 AA
8298743 AAACAGCTCG
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
23 12 0.29
24 13 0.32
25 16 0.39
ACGTcount: A:0.72, C:0.09, G:0.05, T:0.14
Consensus pattern (25 bp):
AAGAAAAAATACCAAAGAAAATACT
Found at i:8298699 original size:12 final size:11
Alignment explanation
Indices: 8298672--8298745 Score: 69
Period size: 12 Copynumber: 6.4 Consensus size: 11
8298662 AAGAAGAAAG
*
8298672 AAAAAATACCA
1 AAAAAATACTA
8298683 AAAAAATACTA
1 AAAAAATACTA
8298694 AGAAAAATACTA
1 A-AAAAATACTA
*
8298706 AATAAAATAAATA
1 AA-AAAAT-ACTA
*
8298719 GAAAAAATACCA
1 -AAAAAATACTA
8298731 AAGAAAA-ACTA
1 AA-AAAATACTA
8298742 AAAA
1 AAAA
8298746 CAGCTCGATT
Statistics
Matches: 53, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
10 2 0.04
11 19 0.36
12 22 0.42
13 8 0.15
14 2 0.04
ACGTcount: A:0.73, C:0.09, G:0.04, T:0.14
Consensus pattern (11 bp):
AAAAAATACTA
Found at i:8299617 original size:25 final size:23
Alignment explanation
Indices: 8299562--8299617 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
8299552 AACTAATGAT
*
8299562 AAATAAAAAAAAATAGAAGATCA
1 AAATAAAAAAAAATAGAAGATAA
***
8299585 ACCCAAAAATAAAACTAGAAGATAA
1 AAATAAAAA-AAAA-TAGAAGATAA
8299610 AAATAAAA
1 AAATAAAA
8299618 GAATGGCTAA
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
23 6 0.25
24 4 0.17
25 14 0.58
ACGTcount: A:0.71, C:0.09, G:0.07, T:0.12
Consensus pattern (23 bp):
AAATAAAAAAAAATAGAAGATAA
Found at i:8299858 original size:41 final size:41
Alignment explanation
Indices: 8299812--8299897 Score: 111
Period size: 41 Copynumber: 2.1 Consensus size: 41
8299802 AGTAAACAAA
* *
8299812 GCTCCTTTAAACAAAGGCTCAACAACTTT-TAAAAATAAAAT
1 GCTCCTCTAAACAAAGGCACAACAACTTTGT-AAAATAAAAT
* * *
8299853 GCTCCTCTAAACAGAGGCACCACAACTTTGTAAAGTAAAAT
1 GCTCCTCTAAACAAAGGCACAACAACTTTGTAAAATAAAAT
8299894 GCTC
1 GCTC
8299898 TTTGACAATC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
41 38 0.97
42 1 0.03
ACGTcount: A:0.41, C:0.23, G:0.12, T:0.24
Consensus pattern (41 bp):
GCTCCTCTAAACAAAGGCACAACAACTTTGTAAAATAAAAT
Found at i:8300540 original size:21 final size:22
Alignment explanation
Indices: 8300511--8300571 Score: 70
Period size: 24 Copynumber: 2.7 Consensus size: 22
8300501 AGGATTTCTT
*
8300511 AAAAGTTCTCATTTAAGA-CTA
1 AAAAATTCTCATTTAAGATCTA
*
8300532 AAAAATTCTCATTTGAAGATTCTT
1 AAAAATTCTCATTT-AAGA-TCTA
*
8300556 AAAAATTCTTATTTAA
1 AAAAATTCTCATTTAA
8300572 AACTCAATGA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
21 13 0.38
22 4 0.12
23 2 0.06
24 15 0.44
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (22 bp):
AAAAATTCTCATTTAAGATCTA
Found at i:8300621 original size:46 final size:44
Alignment explanation
Indices: 8300312--8300774 Score: 299
Period size: 46 Copynumber: 10.4 Consensus size: 44
8300302 GGTTTTACAT
* * *
8300312 CTCAAAGATTCTTATTTGAAA---CTCAAAGATTCTCATTTGAAAA
1 CTCAAAGATTCTCATTTGAAATTTATTAAAGATTCTCATTT--AAA
* * **
8300355 TTCAAAAATTCTCATTTGAAA---ATTCAAAGATTAACATTTAAAA
1 CTCAAAGATTCTCATTTGAAATTTATT-AAAGATTCTCATTT-AAA
* * *
8300398 CTTAAAGATTCTTATTTGAAGA--T-TCAAAGATTCTCATTTGAAA
1 CTCAAAGATTCTCATTTGAA-ATTTATTAAAGATTCTCATTT-AAA
* * *
8300441 CTCAAAAATTCTTATTTGAAA---ACTTAAAGATTCTTATTTAAAA
1 CTCAAAGATTCTCATTTGAAATTTA-TTAAAGATTCTCATTT-AAA
* * *
8300484 CTCAAAGATTCAC-TTTGAGGATTTCTTAAA-AGTTCTCATTTAAGA
1 CTCAAAGATTCTCATTTGA-AATTTATTAAAGA-TTCTCATTTAA-A
* * * * *
8300529 CTAAAAAATTCTCATTTGAAGA-TTCTTAAAAATTCTTATTTAAAA
1 CTCAAAGATTCTCATTTGAA-ATTTATTAAAGATTCTCATTT-AAA
* *
8300574 CTCAATGATTCACATTTGAGAATTTATTAAAGATTCTCATTTGAAA
1 CTCAAAGATTCTCATTTGA-AATTTATTAAAGATTCTCATTT-AAA
*
8300620 CTCAAAGATTCTCATTTGAAGATTTATTAAACATTCTCATTTAAGA
1 CTCAAAGATTCTCATTTGAA-ATTTATTAAAGATTCTCATTTAA-A
* * * * *
8300666 TTCAAAGATTCTCCTTTGACAATGTCTTAAAGATTTTCATTTAAGA
1 CTCAAAGATTCTCATTTGA-AATTTATTAAAGATTCTCATTTAA-A
* * ** * * *
8300712 CTTAAAGCTTCTCATTTGAAAGCGTCTTAAGGATTTTCATTTAAGA
1 CTCAAAGATTCTCATTTGAAA-TTTATTAAAGATTCTCATTTAA-A
*
8300758 CTCAAAGATTCTTATTT
1 CTCAAAGATTCTCATTT
8300775 AAGGATTCAC
Statistics
Matches: 342, Mismatches: 57, Indels: 39
0.78 0.13 0.09
Matches are distributed among these distances:
42 6 0.02
43 100 0.29
44 17 0.05
45 62 0.18
46 156 0.46
47 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.39
Consensus pattern (44 bp):
CTCAAAGATTCTCATTTGAAATTTATTAAAGATTCTCATTTAAA
Found at i:8300628 original size:21 final size:21
Alignment explanation
Indices: 8300312--8300774 Score: 236
Period size: 21 Copynumber: 20.8 Consensus size: 21
8300302 GGTTTTACAT
*
8300312 CTCAAAGATTCTTATTTGAAA
1 CTCAAAGATTCTCATTTGAAA
8300333 CTCAAAGATTCTCATTTGAAAA
1 CTCAAAGATTCTCATTTG-AAA
* *
8300355 TTCAAAAATTCTCATTTGAAAA
1 CTCAAAGATTCTCATTTG-AAA
* ** *
8300377 TTCAAAGATTAACATTTAAAA
1 CTCAAAGATTCTCATTTGAAA
* *
8300398 CTTAAAGATTCTTATTTGAAGA
1 CTCAAAGATTCTCATTTGAA-A
*
8300420 TTCAAAGATTCTCATTTGAAA
1 CTCAAAGATTCTCATTTGAAA
* *
8300441 CTCAAAAATTCTTATTTGAAAA
1 CTCAAAGATTCTCATTTG-AAA
* * *
8300463 CTTAAAGATTCTTATTTAAAA
1 CTCAAAGATTCTCATTTGAAA
* *
8300484 CTCAAAGATTCAC-TTTGAGGATTT
1 CTCAAAGATTCTCATTTGA--A--A
*
8300508 CTTAAA-AGTTCTCATTT-AAGA
1 CTCAAAGA-TTCTCATTTGAA-A
* *
8300529 CTAAAAAATTCTCATTTGAAGA
1 CTCAAAGATTCTCATTTGAA-A
* * * *
8300551 TTCTTAAAAATTCTTATTTAAAA
1 --CTCAAAGATTCTCATTTGAAA
* *
8300574 CTCAATGATTCACATTTGAGAA
1 CTCAAAGATTCTCATTTGA-AA
* *
8300596 TTTATTAAAGATTCTCATTTGAAA
1 ---CTCAAAGATTCTCATTTGAAA
8300620 CTCAAAGATTCTCATTTGAAGA
1 CTCAAAGATTCTCATTTGAA-A
* * *
8300642 TTTATTAAACATTCTCATTT-AAGA
1 ---CTCAAAGATTCTCATTTGAA-A
* *
8300666 TTCAAAGATTCTCCTTTGACAA
1 CTCAAAGATTCTCATTTGA-AA
* *
8300688 TGTCTTAAAGATTTTCATTT-AAGA
1 ---CTCAAAGATTCTCATTTGAA-A
* *
8300712 CTTAAAGCTTCTCATTTGAAA
1 CTCAAAGATTCTCATTTGAAA
* *
8300733 GCGTCTTAAGGATTTTCATTT-AAGA
1 -C-TC--AAAGATTCTCATTTGAA-A
*
8300758 CTCAAAGATTCTTATTT
1 CTCAAAGATTCTCATTT
8300775 AAGGATTCAC
Statistics
Matches: 342, Mismatches: 67, Indels: 66
0.72 0.14 0.14
Matches are distributed among these distances:
20 4 0.01
21 148 0.43
22 88 0.26
23 7 0.02
24 38 0.11
25 57 0.17
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.39
Consensus pattern (21 bp):
CTCAAAGATTCTCATTTGAAA
Found at i:8300752 original size:92 final size:91
Alignment explanation
Indices: 8300336--8300769 Score: 367
Period size: 92 Copynumber: 4.8 Consensus size: 91
8300326 TTTGAAACTC
* * * ***
8300336 AAAGATTCTCATTTGAAAATTCAAAA-ATTCTCATTTGAAAATTC--AAAGATTAACATTTAAAA
1 AAAGATTCTCATTT-AAGACT-AAAAGATTCTCATTTGAAGATTCTTAAAGATTCTTATTTAAAA
* **
8300398 CTTAAAGATTCTTATTTGA-AGA-TTC--
64 CTCAAAGATTCTCCTTTGAGA-ATTTCTT
* *
8300423 AAAGATTCTCATTTGAA-ACTCAAAA-ATTCTTATTTGAA-A-ACTTAAAGATTCTTATTTAAAA
1 AAAGATTCTCATTT-AAGACT-AAAAGATTCTCATTTGAAGATTCTTAAAGATTCTTATTTAAAA
* *
8300484 CTCAAAGATTC-ACTTTGAGGATTTCTT
64 CTCAAAGATTCTCCTTTGAGAATTTCTT
* *
8300511 AAA-AGTTCTCATTTAAGACTAAAAAATTCTCATTTGAAGATTCTTAAAAATTCTTATTTAAAAC
1 AAAGA-TTCTCATTTAAGACTAAAAGATTCTCATTTGAAGATTCTTAAAGATTCTTATTTAAAAC
* * * *
8300575 TCAATGATTCACATTTGAGAATTTATT
65 TCAAAGATTCTCCTTTGAGAATTTCTT
* * * * *
8300602 AAAGATTCTCATTTGAA-ACTCAAAGATTCTCATTTGAAGATTTATTAAACATTCTCATTTAAGA
1 AAAGATTCTCATTT-AAGACTAAAAGATTCTCATTTGAAGA-TTCTTAAAGATTCTTATTTAAAA
* * *
8300666 TTCAAAGATTCTCCTTTGACAATGTCTT
64 CTCAAAGATTCTCCTTTGAGAATTTCTT
* * * ** * *
8300694 AAAGATTTTCATTTAAGACTTAAAGCTTCTCATTTGAAAGCGTCTTAAGGATT-TTCATTTAAGA
1 AAAGATTCTCATTTAAGACTAAAAGATTCTCATTTG-AAGATTCTTAAAGATTCTT-ATTTAAAA
8300758 CTCAAAGATTCT
64 CTCAAAGATTCT
8300770 TATTTAAGGA
Statistics
Matches: 288, Mismatches: 41, Indels: 31
0.80 0.11 0.09
Matches are distributed among these distances:
84 1 0.00
85 7 0.02
86 47 0.16
87 24 0.08
88 27 0.09
89 1 0.00
90 30 0.10
91 48 0.17
92 100 0.35
93 3 0.01
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.38
Consensus pattern (91 bp):
AAAGATTCTCATTTAAGACTAAAAGATTCTCATTTGAAGATTCTTAAAGATTCTTATTTAAAACT
CAAAGATTCTCCTTTGAGAATTTCTT
Found at i:8301988 original size:16 final size:16
Alignment explanation
Indices: 8301969--8302032 Score: 58
Period size: 18 Copynumber: 3.7 Consensus size: 16
8301959 TTTTCTCTCC
8301969 TTTTCATTTTTTATT-T
1 TTTTCATTTTTT-TTCT
8301985 TTTTCTTATTTTTTTTCT
1 TTTTC--ATTTTTTTTCT
*
8302003 TTTTTATTTTTTCCTTCT
1 TTTTCATTTTTT--TTCT
8302021 TTTTCATGTTTT
1 TTTTCAT-TTTT
8302033 CCCATCCATT
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
16 12 0.30
17 2 0.05
18 22 0.55
19 4 0.10
ACGTcount: A:0.08, C:0.11, G:0.02, T:0.80
Consensus pattern (16 bp):
TTTTCATTTTTTTTCT
Found at i:8302007 original size:27 final size:28
Alignment explanation
Indices: 8301969--8302024 Score: 87
Period size: 27 Copynumber: 2.0 Consensus size: 28
8301959 TTTTCTCTCC
*
8301969 TTTTCATTTTTTATTTTTTTCTTATTTT
1 TTTTCATTTTTTATTTTTTCCTTATTTT
*
8301997 TTTTC-TTTTTTATTTTTTCCTTCTTTT
1 TTTTCATTTTTTATTTTTTCCTTATTTT
8302024 T
1 T
8302025 CATGTTTTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 21 0.81
28 5 0.19
ACGTcount: A:0.07, C:0.11, G:0.00, T:0.82
Consensus pattern (28 bp):
TTTTCATTTTTTATTTTTTCCTTATTTT
Found at i:8302020 original size:18 final size:18
Alignment explanation
Indices: 8301985--8302034 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
8301975 TTTTTTATTT
8301985 TTTTCTTATTTTTT--TTC
1 TTTT-TTATTTTTTCCTTC
8302002 TTTTTTATTTTTTCCTTC
1 TTTTTTATTTTTTCCTTC
* *
8302020 TTTTTCATGTTTTCC
1 TTTTTTATTTTTTCC
8302035 CATCCATTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 9 0.31
17 4 0.14
18 16 0.55
ACGTcount: A:0.06, C:0.16, G:0.02, T:0.76
Consensus pattern (18 bp):
TTTTTTATTTTTTCCTTC
Found at i:8302032 original size:27 final size:27
Alignment explanation
Indices: 8301975--8302032 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
8301965 CTCCTTTTCA
* **
8301975 TTTTTTATTTTTTTCTTATTTTTTTTC
1 TTTTTTATTTTTTCCTTATTTTTCATC
* *
8302002 TTTTTTATTTTTTCCTTCTTTTTCATG
1 TTTTTTATTTTTTCCTTATTTTTCATC
8302029 TTTT
1 TTTT
8302033 CCCATCCATT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.07, C:0.10, G:0.02, T:0.81
Consensus pattern (27 bp):
TTTTTTATTTTTTCCTTATTTTTCATC
Found at i:8305261 original size:50 final size:50
Alignment explanation
Indices: 8305207--8305301 Score: 136
Period size: 50 Copynumber: 1.9 Consensus size: 50
8305197 TTTTTTTTGG
* * * * *
8305207 ATTTCTAAATTTTTCACTATTTGGGTCAATTTAGAAATTTTTTTTTCAAA
1 ATTTCTAAATTTTCCACCATTTGAGCCAATTTAGAAATTCTTTTTTCAAA
*
8305257 ATTTCTAAATTTTCCACCATTTGAGCCTATTTAGAAATTCTTTTT
1 ATTTCTAAATTTTCCACCATTTGAGCCAATTTAGAAATTCTTTTT
8305302 ATTTCTTTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 39 1.00
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.51
Consensus pattern (50 bp):
ATTTCTAAATTTTCCACCATTTGAGCCAATTTAGAAATTCTTTTTTCAAA
Found at i:8306713 original size:16 final size:15
Alignment explanation
Indices: 8306682--8306722 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
8306672 ATGAAATCTA
*
8306682 ATATGAAAATGATAC
1 ATATGACAATGATAC
*
8306697 ATATGCACAATGTTAC
1 ATATG-ACAATGATAC
8306713 ATATGACAAT
1 ATATGACAAT
8306723 AAAAATGATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.29
Consensus pattern (15 bp):
ATATGACAATGATAC
Found at i:8307890 original size:60 final size:58
Alignment explanation
Indices: 8307821--8307982 Score: 184
Period size: 60 Copynumber: 2.8 Consensus size: 58
8307811 TTTGTTTTAA
*
8307821 AATTT-TAAATTCTCCATCATTTGGGCCTATTTAGAAATTTTTTTTAATTATTTTTGTTG
1 AATTTCTAAATT-TCCACCATTTGGGCCTATTTAGAAATTTTTTTT-ATTATTTTTGTTG
* * * * * *
8307880 GATTTCTAAATTTTCCACCATTTGGGTCAATTTAGAAATATTTTTTTCTTTTTTTTTTTG
1 AATTTCTAAA-TTTCCACCATTTGGGCCTATTTAGAAAT-TTTTTTTATTATTTTTGTTG
* * *
8307940 AATTTCTAAATTTTCACCATTTTGGCTTATTTAG-AATTTTTTT
1 AATTTCTAAATTTCCACCATTTGGGCCTATTTAGAAATTTTTTT
8307983 CTTTTTTTCT
Statistics
Matches: 87, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
57 6 0.07
58 3 0.03
59 23 0.26
60 46 0.53
61 9 0.10
ACGTcount: A:0.24, C:0.11, G:0.09, T:0.56
Consensus pattern (58 bp):
AATTTCTAAATTTCCACCATTTGGGCCTATTTAGAAATTTTTTTTATTATTTTTGTTG
Found at i:8307972 original size:59 final size:59
Alignment explanation
Indices: 8307807--8307990 Score: 173
Period size: 60 Copynumber: 3.1 Consensus size: 59
8307797 ATTAAAAATA
* * * * * *
8307807 TTTTTTTGTTTTAAAATTT-TAAATTCTCCATCATTTGGGCCTATTTAGAAAT-TTTTTTTAA
1 TTTTTTT-TTTT-GAATTTCTAAATT-TTCACCATTTTGGCTTATTTAGAAATATTTTTTT-C
* * * * *
8307868 TTATTTTTGTTGGATTTCTAAATTTTCCACCA-TTTGGGTCAATTTAGAAATATTTTTTTC
1 TTTTTTTTTTTGAATTTCTAAATTTT-CACCATTTTGGCT-TATTTAGAAATATTTTTTTC
8307928 TTTTTTTTTTTGAATTTCTAAATTTTCACCATTTTGGCTTATTTAG--A-ATTTTTTTC
1 TTTTTTTTTTTGAATTTCTAAATTTTCACCATTTTGGCTTATTTAGAAATATTTTTTTC
8307984 TTTTTTT
1 TTTTTTT
8307991 CTTTCTTTTT
Statistics
Matches: 102, Mismatches: 16, Indels: 15
0.77 0.12 0.11
Matches are distributed among these distances:
56 16 0.16
57 1 0.01
59 20 0.20
60 52 0.51
61 13 0.13
ACGTcount: A:0.22, C:0.10, G:0.09, T:0.59
Consensus pattern (59 bp):
TTTTTTTTTTTGAATTTCTAAATTTTCACCATTTTGGCTTATTTAGAAATATTTTTTTC
Found at i:8308616 original size:12 final size:12
Alignment explanation
Indices: 8308599--8308672 Score: 82
Period size: 11 Copynumber: 6.3 Consensus size: 12
8308589 AAGAAAAAAG
8308599 AAAAAAATACT-
1 AAAAAAATACTA
8308610 AAAAAAATACTA
1 AAAAAAATACTA
*
8308622 AGAAAAATACTA
1 AAAAAAATACTA
* *
8308634 AATAAAATAAATA
1 AAAAAAAT-ACTA
*
8308647 CAAAAAATA-TA
1 AAAAAAATACTA
8308658 AAAAAAAT-CTA
1 AAAAAAATACTA
8308669 AAAA
1 AAAA
8308673 CAACTTAGCT
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
11 26 0.49
12 18 0.34
13 9 0.17
ACGTcount: A:0.74, C:0.07, G:0.01, T:0.18
Consensus pattern (12 bp):
AAAAAAATACTA
Found at i:8308624 original size:25 final size:23
Alignment explanation
Indices: 8308595--8308663 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 23
8308585 ATGAAAGAAA
8308595 AAAGAAAAAAATACTAAAAAAAT
1 AAAGAAAAAAATACTAAAAAAAT
8308618 ACTAAG--AAAAATACTAAATAAAAT
1 A--AAGAAAAAAATACTAAA-AAAAT
*
8308642 AAATACAAAAAATA-TAAAAAAA
1 AAAGA-AAAAAATACTAAAAAAA
8308664 ATCTAAAAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
22 2 0.05
23 17 0.44
24 10 0.26
25 10 0.26
ACGTcount: A:0.75, C:0.06, G:0.03, T:0.16
Consensus pattern (23 bp):
AAAGAAAAAAATACTAAAAAAAT
Found at i:8308670 original size:26 final size:25
Alignment explanation
Indices: 8308600--8308675 Score: 68
Period size: 24 Copynumber: 3.1 Consensus size: 25
8308590 AGAAAAAAGA
**
8308600 AAAAAATACT-AAAAAAATACTAA-
1 AAAAAATACTAAAAAAAATAAAAAC
* * *
8308623 GAAAAATACTAAATAAAATAAATAC
1 AAAAAATACTAAAAAAAATAAAAAC
8308648 AAAAAATA-TAAAAAAAATCTAAAAAC
1 AAAAAATACTAAAAAAAA--TAAAAAC
8308674 AA
1 AA
8308676 CTTAGCTGGC
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
23 9 0.22
24 17 0.41
25 7 0.17
26 8 0.20
ACGTcount: A:0.74, C:0.08, G:0.01, T:0.17
Consensus pattern (25 bp):
AAAAAATACTAAAAAAAATAAAAAC
Found at i:8311120 original size:198 final size:199
Alignment explanation
Indices: 8310782--8311172 Score: 689
Period size: 198 Copynumber: 2.0 Consensus size: 199
8310772 TGTTAGTAAC
*
8310782 CACAATTACAAATATAGACAAATAATTAAAGTTAGAATGAAATGAAAATAAAAACAAATAACATG
1 CACAATTACAAATATAGACAAATAATTAAAGTTAGAATGAAATGAAAATAAAAACAAATAACATA
8310847 TTAAAGTTGTGCACCATTCGTGCACAGGGTAAAAGTCAATCCAAAACTATTAGTTGGCGAAAAGC
66 TTAAAGTTGTGCACCATTCGTGCACAGGGTAAAAGTCAATCCAAAACTATTAGTTGGCGAAAAGC
* *
8310912 CATGTATTATTAATTTGTGGAAGTACTTT-CAACCATAAGGATTGCCAGTGGTAGTTGTAGTTAA
131 CATGTATTATTAATTTGTGGAAGTACTTTCCAACCACAAGGATTGCCAGTAGTAGTTGTAGTTAA
8310976 CAAA
196 CAAA
* *
8310980 CACAATTACAACTATAGACAAATAATTAAGGTTAGAATGAAATGAAAATAAAAACAAATAACATA
1 CACAATTACAAATATAGACAAATAATTAAAGTTAGAATGAAATGAAAATAAAAACAAATAACATA
*
8311045 TTAAAGTTGTGCATCATTCGTGCACAGGGTAAGAA-TCAATCCAAAACTATTAGTTGGC-AAAAG
66 TTAAAGTTGTGCACCATTCGTGCACAGGGTAA-AAGTCAATCCAAAACTATTAGTTGGCGAAAA-
8311108 GCCATGTATTATTAATTTGTGGAAGTACTTTCCAACCACAAGGATTGCCAGTAGTAGTTGTAGTT
129 GCCATGTATTATTAATTTGTGGAAGTACTTTCCAACCACAAGGATTGCCAGTAGTAGTTGTAGTT
8311173 GCTTTGTGCA
Statistics
Matches: 184, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
197 4 0.02
198 147 0.80
199 33 0.18
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.28
Consensus pattern (199 bp):
CACAATTACAAATATAGACAAATAATTAAAGTTAGAATGAAATGAAAATAAAAACAAATAACATA
TTAAAGTTGTGCACCATTCGTGCACAGGGTAAAAGTCAATCCAAAACTATTAGTTGGCGAAAAGC
CATGTATTATTAATTTGTGGAAGTACTTTCCAACCACAAGGATTGCCAGTAGTAGTTGTAGTTAA
CAAA
Found at i:8317414 original size:49 final size:49
Alignment explanation
Indices: 8317347--8317444 Score: 151
Period size: 49 Copynumber: 2.0 Consensus size: 49
8317337 ATCAAATAAG
* * *
8317347 CAAAACAAGCCATTATACACACAAAAGTTAAAAACAAAGATATCAGCAA
1 CAAAACAAACCATTATACACACAAAAGTAAAAAACAAAGAGATCAGCAA
* *
8317396 CAAAATAAACCATTATACACACAAAAGTAAAAAACATAGAGATCAGCAA
1 CAAAACAAACCATTATACACACAAAAGTAAAAAACAAAGAGATCAGCAA
8317445 TATTAAAAGG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.58, C:0.19, G:0.08, T:0.14
Consensus pattern (49 bp):
CAAAACAAACCATTATACACACAAAAGTAAAAAACAAAGAGATCAGCAA
Found at i:8320369 original size:25 final size:23
Alignment explanation
Indices: 8320325--8320373 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 23
8320315 ATTTTTTTCT
*
8320325 ATTTTTTATTTTTTAGGATTTAA
1 ATTTTTTATTTTTTAAGATTTAA
8320348 ATTTTGTTATATTTTTAAGATTTAA
1 ATTTT-TTAT-TTTTTAAGATTTAA
8320373 A
1 A
8320374 AAGATTGGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.22
24 4 0.17
25 14 0.61
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (23 bp):
ATTTTTTATTTTTTAAGATTTAA
Found at i:8321911 original size:16 final size:15
Alignment explanation
Indices: 8321890--8321919 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
8321880 ACGAAAGTAT
8321890 ATTTATATATCAATAA
1 ATTTATATAT-AATAA
8321906 ATTTATATATAATA
1 ATTTATATATAATA
8321920 TCAACTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTTATATATAATAA
Found at i:8322634 original size:31 final size:32
Alignment explanation
Indices: 8322595--8322663 Score: 104
Period size: 31 Copynumber: 2.2 Consensus size: 32
8322585 ATTTAATGAC
* *
8322595 ATAATTCTAATCATATTGTTTTAATT-TAATT
1 ATAATTCTAATCAGATTATTTTAATTCTAATT
*
8322626 GTAATTCTAATCAGATTATTTTAATTCTAATT
1 ATAATTCTAATCAGATTATTTTAATTCTAATT
8322658 ATAATT
1 ATAATT
8322664 AAAACAAGAC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
31 23 0.70
32 10 0.30
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.52
Consensus pattern (32 bp):
ATAATTCTAATCAGATTATTTTAATTCTAATT
Found at i:8323084 original size:18 final size:18
Alignment explanation
Indices: 8323057--8323097 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
8323047 AATATATACA
* *
8323057 TATATTTATATTGATATC
1 TATATATATATAGATATC
*
8323075 TATATATATATAGATATT
1 TATATATATATAGATATC
8323093 TATAT
1 TATAT
8323098 TGAAATAAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (18 bp):
TATATATATATAGATATC
Found at i:8326790 original size:16 final size:17
Alignment explanation
Indices: 8326771--8326813 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 17
8326761 TAATTTGTTT
8326771 ATAGTAAAATATA-AAA
1 ATAGTAAAATATATAAA
8326787 ATAGTAAATAATATATAAA
1 ATAGT-AA-AATATATAAA
8326806 ATA-TAAAA
1 ATAGTAAAA
8326814 AAATAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
16 7 0.29
17 4 0.17
18 7 0.29
19 6 0.25
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (17 bp):
ATAGTAAAATATATAAA
Found at i:8326815 original size:9 final size:9
Alignment explanation
Indices: 8326776--8326823 Score: 55
Period size: 8 Copynumber: 5.4 Consensus size: 9
8326766 TGTTTATAGT
8326776 AAAATAT-A
1 AAAATATAA
8326784 AAAATAGTAA
1 AAAATA-TAA
* *
8326794 ATAATATAT
1 AAAATATAA
8326803 AAAATATAA
1 AAAATATAA
8326812 AAAA-ATAA
1 AAAATATAA
8326820 AAAA
1 AAAA
8326824 AACAAACGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
8 14 0.41
9 14 0.41
10 6 0.18
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (9 bp):
AAAATATAA
Found at i:8328422 original size:1 final size:1
Alignment explanation
Indices: 8328379--8328403 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
8328369 AACAATTTAG
8328379 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
8328404 CTTAAACAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:8329003 original size:2 final size:2
Alignment explanation
Indices: 8328996--8329023 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8328986 TAAAAGATAA
8328996 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8329024 TGATATGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8329083 original size:21 final size:21
Alignment explanation
Indices: 8329059--8329098 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
8329049 ATCAAAAGAA
8329059 TAAA-AAATAAAAAATTAATGG
1 TAAACAAA-AAAAAATTAATGG
*
8329080 TAAACAAAAATAAATTAAT
1 TAAACAAAAAAAAATTAAT
8329099 TTAAAAATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.25
Consensus pattern (21 bp):
TAAACAAAAAAAAATTAATGG
Found at i:8331184 original size:14 final size:15
Alignment explanation
Indices: 8331165--8331193 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8331155 AGCCTCCCCT
8331165 CTTGCT-AATATTTA
1 CTTGCTAAATATTTA
8331179 CTTGCTAAATATTTA
1 CTTGCTAAATATTTA
8331194 AATTATTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.31, C:0.14, G:0.07, T:0.48
Consensus pattern (15 bp):
CTTGCTAAATATTTA
Found at i:8338278 original size:120 final size:121
Alignment explanation
Indices: 8338140--8338383 Score: 404
Period size: 121 Copynumber: 2.0 Consensus size: 121
8338130 TATTTTTTTG
* * *
8338140 ATAAACTTTAAACTCGTTTTATTGTTTTATTAAAAAGAT-AATTTTTTACGTCG-CTAATCATAG
1 ATAAACTTTAAACTCGTTTTATTGTTTTATTAAAAAGATAAACTTTTTACATCGTC-AATCATAC
8338203 CTAGCAAAAAAGATTGATA-ACAAATCTCCCTGTTTTAAATTTTTTTAAAATTTTCGT
65 CTAGCAAAAAAGATTGA-AGACAAATCTCCCTGTTTTAAATTTTTTTAAAATTTTCGT
*
8338260 ATAAACTTTAAACTCGTTTTATTGTTTTATTAAAAAGATAAACTTTTTACATTGTCAATCATACC
1 ATAAACTTTAAACTCGTTTTATTGTTTTATTAAAAAGATAAACTTTTTACATCGTCAATCATACC
*
8338325 TAGCAAAAAAGATTGAAGACAAATCTCCCTGTTTTGAATTTTTTTAAAATTTTCGT
66 TAGCAAAAAAGATTGAAGACAAATCTCCCTGTTTTAAATTTTTTTAAAATTTTCGT
8338381 ATA
1 ATA
8338384 GCAATCCCTA
Statistics
Matches: 116, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
120 40 0.34
121 75 0.65
122 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.42
Consensus pattern (121 bp):
ATAAACTTTAAACTCGTTTTATTGTTTTATTAAAAAGATAAACTTTTTACATCGTCAATCATACC
TAGCAAAAAAGATTGAAGACAAATCTCCCTGTTTTAAATTTTTTTAAAATTTTCGT
Found at i:8346780 original size:18 final size:18
Alignment explanation
Indices: 8346725--8346783 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
8346715 TTACATATTA
*
8346725 TTAATTTTTTTATTAAACT
1 TTAA-TTTTTTATTAAAAT
*
8346744 TT-ATTGATTTATT--AAT
1 TTAATT-TTTTATTAAAAT
8346760 TTAATTTTTTATTAAAAT
1 TTAATTTTTTATTAAAAT
8346778 TTAATT
1 TTAATT
8346784 GAATGATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
16 10 0.30
17 5 0.15
18 16 0.48
19 2 0.06
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.63
Consensus pattern (18 bp):
TTAATTTTTTATTAAAAT
Found at i:8348775 original size:2 final size:2
Alignment explanation
Indices: 8348764--8348794 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
8348754 TACGTGTGTG
*
8348764 TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8348795 TTTGAAGCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:8349142 original size:96 final size:97
Alignment explanation
Indices: 8349021--8349212 Score: 323
Period size: 98 Copynumber: 2.0 Consensus size: 97
8349011 TTTTGTTTGA
*
8349021 ACCTTATTGCTTTTATACA-TTTTTTTTTATAATTTTTGTGTCATGTTTAAAATTATCAGATCTA
1 ACCTTATTGCTTTTATACATTTTTTTTTTATAATTTTCGTGTCATGTTTAAAATTATCAGATCTA
8349085 ATAATTTTATGAAAGATGAAAGTATTAAATAT
66 ATAATTTTATGAAAGATGAAAGTATTAAATAT
* * * *
8349117 ACCTTGTTGCTTTTATACTTGTTTTTTTTTATTATTTTCGTGTCATGTTTAAAATTATCAGATTT
1 ACCTTATTGCTTTTATACAT-TTTTTTTTTATAATTTTCGTGTCATGTTTAAAATTATCAGATCT
8349182 AATAATTTTATGAAAGATGAAAGTATTAAAT
65 AATAATTTTATGAAAGATGAAAGTATTAAAT
8349213 TATGTCAAGA
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
96 17 0.19
98 72 0.81
ACGTcount: A:0.32, C:0.07, G:0.10, T:0.50
Consensus pattern (97 bp):
ACCTTATTGCTTTTATACATTTTTTTTTTATAATTTTCGTGTCATGTTTAAAATTATCAGATCTA
ATAATTTTATGAAAGATGAAAGTATTAAATAT
Found at i:8349616 original size:15 final size:15
Alignment explanation
Indices: 8349593--8349645 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
8349583 AGACCTGTCT
8349593 CTGAAATATAACACA
1 CTGAAATATAACACA
* * **
8349608 CTGAGATATAATATG
1 CTGAAATATAACACA
*
8349623 CAGAAATATAACACA
1 CTGAAATATAACACA
8349638 CTGAAATA
1 CTGAAATA
8349646 GAATATGCAA
Statistics
Matches: 28, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.51, C:0.15, G:0.11, T:0.23
Consensus pattern (15 bp):
CTGAAATATAACACA
Found at i:8349629 original size:30 final size:30
Alignment explanation
Indices: 8349595--8349654 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
8349585 ACCTGTCTCT
* *
8349595 GAAATATAACACACTGAGATATAATATGCA
1 GAAATATAACACACTGAAATAGAATATGCA
8349625 GAAATATAACACACTGAAATAGAATATGCA
1 GAAATATAACACACTGAAATAGAATATGCA
8349655 AACTTTTTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.52, C:0.13, G:0.13, T:0.22
Consensus pattern (30 bp):
GAAATATAACACACTGAAATAGAATATGCA
Found at i:8352178 original size:34 final size:34
Alignment explanation
Indices: 8352083--8352184 Score: 100
Period size: 34 Copynumber: 3.0 Consensus size: 34
8352073 AAATTTTTAG
* **
8352083 ATATATATTTTCAATAAATTATATAACATA-CAA
1 ATATATATTTTCTATAAATTATATAATTTATCAA
* * * *
8352116 GATATA-ATTTTTTGTAATTTATAAAATTTATCAA
1 -ATATATATTTTCTATAAATTATATAATTTATCAA
* *
8352150 ATATATATTTTGTATAAATTATGTAATTTATCAA
1 ATATATATTTTCTATAAATTATATAATTTATCAA
8352184 A
1 A
8352185 AATGTACATT
Statistics
Matches: 54, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
33 22 0.41
34 32 0.59
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.46
Consensus pattern (34 bp):
ATATATATTTTCTATAAATTATATAATTTATCAA
Found at i:8352214 original size:22 final size:21
Alignment explanation
Indices: 8352189--8352231 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
8352179 ATCAAAAATG
8352189 TACATTCGAAAGTTGAAAAAAA
1 TACATT-GAAAGTTGAAAAAAA
* *
8352211 TACATTTAAATTTGAAAAAAA
1 TACATTGAAAGTTGAAAAAAA
8352232 AAATCAATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.56, C:0.07, G:0.09, T:0.28
Consensus pattern (21 bp):
TACATTGAAAGTTGAAAAAAA
Found at i:8352737 original size:18 final size:18
Alignment explanation
Indices: 8352714--8352752 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8352704 CCACAAACTC
8352714 TCCCTTTCCCTCTT-CCCT
1 TCCCTTT-CCTCTTCCCCT
*
8352732 TCCCTTTCTTCTTCCCCT
1 TCCCTTTCCTCTTCCCCT
8352750 TCC
1 TCC
8352753 TTCCTCCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (18 bp):
TCCCTTTCCTCTTCCCCT
Found at i:8359450 original size:7 final size:7
Alignment explanation
Indices: 8359438--8359473 Score: 63
Period size: 7 Copynumber: 5.1 Consensus size: 7
8359428 GCTTCCTGAA
8359438 TTTGTGC
1 TTTGTGC
8359445 TTTGTGC
1 TTTGTGC
*
8359452 ATTGTGC
1 TTTGTGC
8359459 TTTGTGC
1 TTTGTGC
8359466 TTTGTGC
1 TTTGTGC
8359473 T
1 T
8359474 CACATTTTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.03, C:0.14, G:0.28, T:0.56
Consensus pattern (7 bp):
TTTGTGC
Found at i:8367966 original size:26 final size:27
Alignment explanation
Indices: 8367937--8367987 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
8367927 CAAAATTTAA
8367937 TATGAT-TAAGATATTT-TCAAATAAAT
1 TATGATCTAA-ATATTTCTCAAATAAAT
*
8367963 TATGATCTAAATTTTTCTCAAATAA
1 TATGATCTAAATATTTCTCAAATAA
8367988 TTTTAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.43, C:0.08, G:0.06, T:0.43
Consensus pattern (27 bp):
TATGATCTAAATATTTCTCAAATAAAT
Found at i:8369594 original size:14 final size:13
Alignment explanation
Indices: 8369569--8369598 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
8369559 TAAATCTTAC
8369569 ATAATTTTAAATT
1 ATAATTTTAAATT
8369582 ATAATTATTAAATT
1 ATAATT-TTAAATT
8369596 ATA
1 ATA
8369599 CTATAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
ATAATTTTAAATT
Found at i:8372780 original size:17 final size:17
Alignment explanation
Indices: 8372758--8372792 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
8372748 GACATGTAAG
8372758 CTAAATAATAAATGTAT
1 CTAAATAATAAATGTAT
8372775 CTAAATAATAAATGTAT
1 CTAAATAATAAATGTAT
8372792 C
1 C
8372793 ACGCTTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.09, G:0.06, T:0.34
Consensus pattern (17 bp):
CTAAATAATAAATGTAT
Found at i:8376887 original size:18 final size:17
Alignment explanation
Indices: 8376854--8376887 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8376844 CATAGCTGCT
*
8376854 TCTTGCTTATTTTGTTG
1 TCTTGCTTAATTTGTTG
8376871 TCTTGCTTCAATTTGTT
1 TCTTGCTT-AATTTGTT
8376888 CCTTAGACTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.09, C:0.15, G:0.15, T:0.62
Consensus pattern (17 bp):
TCTTGCTTAATTTGTTG
Found at i:8378071 original size:21 final size:21
Alignment explanation
Indices: 8378047--8378086 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8378037 CGAACAACTT
*
8378047 CAACAGCAGCCTGAGCAGCTG
1 CAACAGCAGCCTCAGCAGCTG
* *
8378068 CAACCGCGGCCTCAGCAGC
1 CAACAGCAGCCTCAGCAGC
8378087 CATAGCCGTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.40, G:0.28, T:0.07
Consensus pattern (21 bp):
CAACAGCAGCCTCAGCAGCTG
Found at i:8382162 original size:6 final size:6
Alignment explanation
Indices: 8382153--8382185 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
8382143 CTCTGTCCCT
*
8382153 CCTTTC CCTTTC CCTTTC CCTTTC CCTGTC CCT
1 CCTTTC CCTTTC CCTTTC CCTTTC CCTTTC CCT
8382186 CTCCTTGCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.52, G:0.03, T:0.45
Consensus pattern (6 bp):
CCTTTC
Found at i:8394769 original size:28 final size:30
Alignment explanation
Indices: 8394714--8394774 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
8394704 CTAAAAAAAA
* * *
8394714 TATTTTTTTAGTTATTTATGTTTCGAAATT
1 TATTTTTTTAGTAATATATGTATCGAAATT
8394744 TATTTTTTTA-TAATATATGTAT-GAAATT
1 TATTTTTTTAGTAATATATGTATCGAAATT
8394772 TAT
1 TAT
8394775 AAAATGTTGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 9 0.32
29 9 0.32
30 10 0.36
ACGTcount: A:0.30, C:0.02, G:0.08, T:0.61
Consensus pattern (30 bp):
TATTTTTTTAGTAATATATGTATCGAAATT
Found at i:8394996 original size:17 final size:19
Alignment explanation
Indices: 8394962--8394996 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8394952 TTAAAATTTT
8394962 TAAAATTTAGATATCAAAA
1 TAAAATTTAGATATCAAAA
8394981 TAAAATTT-GA-ATCAAA
1 TAAAATTTAGATATCAAA
8394997 GTTTAAGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 2 0.12
19 8 0.50
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (19 bp):
TAAAATTTAGATATCAAAA
Found at i:8397185 original size:175 final size:175
Alignment explanation
Indices: 8396890--8397228 Score: 549
Period size: 175 Copynumber: 1.9 Consensus size: 175
8396880 ACTAAAATTA
*
8396890 GAAATCGGTACTTAATTCTCAACGTATATGAAATAAAATTAAACTAAAATTATCAAATTAATTTT
1 GAAATCGATACTTAATTCTCAACGTATATGAAATAAAATTAAACTAAAATTATCAAATTAATTTT
**
8396955 AGTATAAAAATTATATTTGTATGAATTAGACAATATAAATTAAATCTCAAATTTCAATTGAGTAT
66 AGTATAAAAATTATATTTGTATGAATTAGACAATATAAATTAAATCTCAAATTTCAATTGAAAAT
*
8397020 AGAAAACTGATGGTATAAATTAGTGATGCTAATTTATATTATATAT
131 AG-AAACTGATGGTATAAATTAGCGATGCTAATTTATATTATATAT
* *
8397066 GAAATCGATACTTAATTTTCAACAG-ATATGAAATAAAATTAAACTAAAATTATTAAATTAA-TT
1 GAAATCGATACTTAATTCTCAAC-GTATATGAAATAAAATTAAACTAAAATTATCAAATTAATTT
* *
8397129 TAGTATAAAGATTATATTTGTATGAATTAGATAATATAAATTAAATCTTC-AATTTCAATTGAAA
65 TAGTATAAAAATTATATTTGTATGAATTAGACAATATAAATTAAATC-TCAAATTTCAATTGAAA
*
8397193 ATAGAAACTGATGGTATAATTTAGCGATGCTAATTT
129 ATAGAAACTGATGGTATAAATTAGCGATGCTAATTT
8397229 GATAAAATTT
Statistics
Matches: 152, Mismatches: 9, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
174 30 0.20
175 63 0.41
176 58 0.38
177 1 0.01
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.37
Consensus pattern (175 bp):
GAAATCGATACTTAATTCTCAACGTATATGAAATAAAATTAAACTAAAATTATCAAATTAATTTT
AGTATAAAAATTATATTTGTATGAATTAGACAATATAAATTAAATCTCAAATTTCAATTGAAAAT
AGAAACTGATGGTATAAATTAGCGATGCTAATTTATATTATATAT
Found at i:8397794 original size:16 final size:16
Alignment explanation
Indices: 8397775--8397824 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
8397765 TATTATTTTT
8397775 AAATATAAATATTTAA
1 AAATATAAATATTTAA
* * *
8397791 AAATATCATTATATAA
1 AAATATAAATATTTAA
*
8397807 AATATATAAATAATTAA
1 AA-ATATAAATATTTAA
8397824 A
1 A
8397825 TAATTAATTA
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
16 15 0.58
17 11 0.42
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (16 bp):
AAATATAAATATTTAA
Found at i:8398504 original size:42 final size:41
Alignment explanation
Indices: 8398397--8398486 Score: 103
Period size: 42 Copynumber: 2.1 Consensus size: 41
8398387 ATTTTTAAAA
* *
8398397 TATTTAAATTCAATTCGTATTT-AATAAAAAAATTATTTAATT
1 TATTTAAACTCAATT--AATTTAAATAAAAAAATTATTTAATT
*
8398439 TATTTAAACTCAATTAATTTAAATAATAAAA-TATTTATATT
1 TATTTAAACTCAATTAATTTAAATAAAAAAATTATTTA-ATT
8398480 TAATTTA
1 T-ATTTA
8398487 TATTCGATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
40 10 0.24
41 13 0.31
42 19 0.45
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.48
Consensus pattern (41 bp):
TATTTAAACTCAATTAATTTAAATAAAAAAATTATTTAATT
Found at i:8398608 original size:14 final size:15
Alignment explanation
Indices: 8398591--8398627 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
8398581 AAGTTATAAT
8398591 TAAATAAATTTA-AA
1 TAAATAAATTTACAA
8398605 TAAATAAATTTACAA
1 TAAATAAATTTACAA
*
8398620 AAAATAAA
1 TAAATAAA
8398628 CGAATTCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAATAAATTTACAA
Found at i:8398662 original size:12 final size:12
Alignment explanation
Indices: 8398645--8398691 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
8398635 AAATAAATAT
8398645 AAATAAATTTAA
1 AAATAAATTTAA
*
8398657 AAATAAAATT-A
1 AAATAAATTTAA
*
8398668 AAATAAATGATAA
1 AAATAAAT-TTAA
8398681 AAATATAATTT
1 AAATA-AATTT
8398692 TATTAATATT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
11 8 0.29
12 10 0.36
13 7 0.25
14 3 0.11
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (12 bp):
AAATAAATTTAA
Found at i:8398683 original size:13 final size:12
Alignment explanation
Indices: 8398635--8398685 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 12
8398625 AAACGAATTC
8398635 AAATAAATAT--
1 AAATAAATATAA
*
8398645 AAATAAATTTAA
1 AAATAAATATAA
*
8398657 AAATAAA-ATTA
1 AAATAAATATAA
8398668 AAATAAATGATAA
1 AAATAAAT-ATAA
8398681 AAATA
1 AAATA
8398686 TAATTTTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
10 9 0.27
11 9 0.27
12 7 0.21
13 8 0.24
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (12 bp):
AAATAAATATAA
Found at i:8398690 original size:24 final size:23
Alignment explanation
Indices: 8398645--8398690 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
8398635 AAATAAATAT
*
8398645 AAATAAATTTAAAAATAAAATTA
1 AAATAAATATAAAAATAAAATTA
*
8398668 AAATAAATGATAAAAATATAATT
1 AAATAAAT-ATAAAAATAAAATT
8398691 TTATTAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (23 bp):
AAATAAATATAAAAATAAAATTA
Found at i:8403314 original size:45 final size:45
Alignment explanation
Indices: 8403260--8403350 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
8403250 TTGCTTAATT
8403260 CATTTCTTGTTTTTCCTGAATTTTATTCTCTGGCTTTATTTGTTG
1 CATTTCTTGTTTTTCCTGAATTTTATTCTCTGGCTTTATTTGTTG
*
8403305 CATTTCTTGTTTTTCCTGATTTTTATTCTCTGGCTTTATTTGTTG
1 CATTTCTTGTTTTTCCTGAATTTTATTCTCTGGCTTTATTTGTTG
8403350 C
1 C
8403351 TTATTATATA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.10, C:0.16, G:0.13, T:0.60
Consensus pattern (45 bp):
CATTTCTTGTTTTTCCTGAATTTTATTCTCTGGCTTTATTTGTTG
Found at i:8408822 original size:211 final size:208
Alignment explanation
Indices: 8408419--8408833 Score: 589
Period size: 211 Copynumber: 2.0 Consensus size: 208
8408409 ATAGAAACCA
*
8408419 ATCAGTAGCCAAAATATGCAAGCAAAGGAGATTTTAATGAAGATGTTCAAAAGATGTCCACCCTT
1 ATCAGTAGCCAAAATATGCAAGCAAAGGAGATTTTAATGAAGATGTTCAAAAGATGTCCAACCTT
* * * *
8408484 CCTTGTTTTTCAAGCTCTATCATACAATAACTTAATGCAAATCTCCCTTTCTGACCCACTTTGAG
66 CCTTGTTTTTCAAGCTCTATCATACAATAACTTAATGCAAATCCCCCCTTCCGACACACTTTGAG
* ** * * *
8408549 CAATGGAGGTTCAAAGTACTTGCCAGTGAGTGGTTTGGCTTCACATAATATAGGTGCATAGCCAT
131 CAATGAAACTTCAAAGTACTTGCCAGTGAGTGGTTTGGCTTCACATAATACAGATCCATAGCCAT
8408614 AGAACAACAGAACT
196 A-AACAACAGAACT
* * *
8408628 ATCAGTAGCCAAAATATGCAAGCAAAGGAGATTTTAATGAAGGTGTTCAACAGATGTGCAACCTT
1 ATCAGTAGCCAAAATATGCAAGCAAAGGAGATTTTAATGAAGATGTTCAAAAGATGTCCAACCTT
* *
8408693 CCTTGTTTTTCAAGCACTCTATCATGCAATAACTTAATGCAAATCCCCCCTTCCGACATACTTTG
66 CCTTGTTTTTCAAG--CTCTATCATACAATAACTTAATGCAAATCCCCCCTTCCGACACACTTTG
* * * * * *
8408758 AGCCATGAAACTTTAAAGTACTT-CTCTGTGAGTGGTTTGGTTTCACATACTACATATCCATAGC
129 AGCAATGAAACTTCAAAGTACTTGC-CAGTGAGTGGTTTGGCTTCACATAATACAGATCCATAGC
8408822 CATAAACAACAG
193 CATAAACAACAG
8408834 CCATACTAGA
Statistics
Matches: 181, Mismatches: 22, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
209 75 0.41
210 9 0.05
211 97 0.54
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (208 bp):
ATCAGTAGCCAAAATATGCAAGCAAAGGAGATTTTAATGAAGATGTTCAAAAGATGTCCAACCTT
CCTTGTTTTTCAAGCTCTATCATACAATAACTTAATGCAAATCCCCCCTTCCGACACACTTTGAG
CAATGAAACTTCAAAGTACTTGCCAGTGAGTGGTTTGGCTTCACATAATACAGATCCATAGCCAT
AAACAACAGAACT
Found at i:8410142 original size:2 final size:2
Alignment explanation
Indices: 8410135--8410163 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8410125 CAACTTAGTT
8410135 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8410164 TCTTCTTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8417674 original size:7 final size:7
Alignment explanation
Indices: 8417662--8417686 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8417652 CCTTTTTATT
8417662 TTAATAA
1 TTAATAA
8417669 TTAATAA
1 TTAATAA
8417676 TTAATAA
1 TTAATAA
8417683 TTAA
1 TTAA
8417687 ATCGAGTACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
TTAATAA
Found at i:8420340 original size:28 final size:28
Alignment explanation
Indices: 8420309--8420403 Score: 77
Period size: 29 Copynumber: 3.3 Consensus size: 28
8420299 ATATATAAAA
8420309 ATAATATAATTTAATATTTAAAAAAATT
1 ATAATATAATTTAATATTTAAAAAAATT
**
8420337 ATAA-ATAAATTTAATAAAATAAAAAAATT
1 ATAATAT-AATTTAAT-ATTTAAAAAAATT
* * * *
8420366 ATATTTTATATTT-TTATATTAATATAAATT
1 ATAATATA-ATTTAATAT-TTAA-AAAAATT
8420396 ATAATATA
1 ATAATATA
8420404 TAATTTTTAT
Statistics
Matches: 51, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
27 2 0.04
28 13 0.25
29 19 0.37
30 17 0.33
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (28 bp):
ATAATATAATTTAATATTTAAAAAAATT
Found at i:8420397 original size:30 final size:30
Alignment explanation
Indices: 8420361--8420445 Score: 95
Period size: 30 Copynumber: 2.8 Consensus size: 30
8420351 TAAAATAAAA
* *
8420361 AAATTATATTTTAT-ATTTTTATATTAATAT
1 AAATTATAATATATAATTTTTATA-TAATAT
8420391 AAATTATAATATATAATTTTTATATAATAT
1 AAATTATAATATATAATTTTTATATAATAT
*
8420421 ATAA-TATGA-ATATAATATTTTATAT
1 A-AATTATAATATATAAT-TTTTATAT
8420446 TAATCAAAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
29 7 0.14
30 31 0.63
31 11 0.22
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (30 bp):
AAATTATAATATATAATTTTTATATAATAT
Found at i:8420433 original size:18 final size:18
Alignment explanation
Indices: 8420380--8420438 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
8420370 TTTATATTTT
8420380 TATATTAATATAAATTATAA
1 TATA-TAATATAAA-TATAA
* **
8420400 TATATAATTTTTATATAA
1 TATATAATATAAATATAA
*
8420418 TATATAATATGAATATAA
1 TATATAATATAAATATAA
8420436 TAT
1 TAT
8420439 TTTATATTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
18 23 0.70
19 6 0.18
20 4 0.12
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
TATATAATATAAATATAA
Found at i:8422664 original size:32 final size:32
Alignment explanation
Indices: 8422623--8422685 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
8422613 TATATTGGTC
*
8422623 TAATTACCTAAGACTCTTTCAAATTTAATCAG
1 TAATTACCTAAAACTCTTTCAAATTTAATCAG
*
8422655 TAATTACCTAAAACTCTTTCAAATTTTATCA
1 TAATTACCTAAAACTCTTTCAAATTTAATCA
8422686 CTCCATCATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.38, C:0.19, G:0.03, T:0.40
Consensus pattern (32 bp):
TAATTACCTAAAACTCTTTCAAATTTAATCAG
Found at i:8424427 original size:21 final size:21
Alignment explanation
Indices: 8424401--8424442 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
8424391 GTCCATCTGT
8424401 CTCTAGCCATGTTACTTCATA
1 CTCTAGCCATGTTACTTCATA
8424422 CTCTAGCCATGTTACTTCATA
1 CTCTAGCCATGTTACTTCATA
8424443 AGAACAGTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.29, G:0.10, T:0.38
Consensus pattern (21 bp):
CTCTAGCCATGTTACTTCATA
Found at i:8453847 original size:7 final size:7
Alignment explanation
Indices: 8453813--8453846 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
8453803 CTATTATGCC
8453813 AATAAAT
1 AATAAAT
8453820 AATGAAAT
1 AAT-AAAT
8453828 AATAAAT
1 AATAAAT
*
8453835 AATAATT
1 AATAAAT
8453842 AATAA
1 AATAA
8453847 TAAATCTACA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
7 18 0.72
8 7 0.28
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (7 bp):
AATAAAT
Found at i:8455924 original size:13 final size:13
Alignment explanation
Indices: 8455906--8455931 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8455896 TTTATGAATA
8455906 AAAAAATTTATTT
1 AAAAAATTTATTT
8455919 AAAAAATTTATTT
1 AAAAAATTTATTT
8455932 TTTACATGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAAAAATTTATTT
Found at i:8465016 original size:23 final size:23
Alignment explanation
Indices: 8464990--8465043 Score: 83
Period size: 23 Copynumber: 2.3 Consensus size: 23
8464980 ATATAAACTT
8464990 TAAA-AAAAGATAATTTTGACTAA
1 TAAATAAAA-ATAATTTTGACTAA
*
8465013 TAAATAAAAATAATTTTGATTAA
1 TAAATAAAAATAATTTTGACTAA
8465036 TAAATAAA
1 TAAATAAA
8465044 TTATATTATC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 25 0.86
24 4 0.14
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (23 bp):
TAAATAAAAATAATTTTGACTAA
Found at i:8465311 original size:16 final size:16
Alignment explanation
Indices: 8465290--8465323 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8465280 GTTAAGGATT
*
8465290 AAAATAAAATTTTAAA
1 AAAATAAAATTATAAA
*
8465306 AAAATAATATTATAAA
1 AAAATAAAATTATAAA
8465322 AA
1 AA
8465324 CTAAATTCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAATAAAATTATAAA
Found at i:8465368 original size:29 final size:28
Alignment explanation
Indices: 8465305--8465370 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 28
8465295 AAAATTTTAA
*
8465305 AAAAATAATATTATAAAAACTAAATTCT
1 AAAAATAATATTAAAAAAACTAAATTCT
* * * *
8465333 ATTAAATACTATTAAAAAAATTAGATTCTT
1 A-AAAATAATATTAAAAAAACTAAATTC-T
8465363 AAAAATAA
1 AAAAATAA
8465371 AAAAATATAT
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
28 1 0.03
29 26 0.90
30 2 0.07
ACGTcount: A:0.59, C:0.06, G:0.02, T:0.33
Consensus pattern (28 bp):
AAAAATAATATTAAAAAAACTAAATTCT
Found at i:8468060 original size:17 final size:17
Alignment explanation
Indices: 8468025--8468062 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
8468015 TTCTCTTTTC
8468025 TTTTTTTTTTTAATGAA
1 TTTTTTTTTTTAATGAA
*
8468042 TTTTTCTTTTTTTAT-AA
1 TTTTT-TTTTTTAATGAA
8468059 TTTT
1 TTTT
8468063 GAATAAAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTTTTTTTTAATGAA
Found at i:8468943 original size:29 final size:29
Alignment explanation
Indices: 8468897--8468968 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 29
8468887 CATTTAATAC
*
8468897 TTTAATTGAATTGA-AATAGAAAAG-TAAAAG
1 TTTAATT-AATT-ATAATA-AAAAGTTAAAAA
*
8468927 TTTAATTAATTATAATAAAATGTTAAAAA
1 TTTAATTAATTATAATAAAAAGTTAAAAA
*
8468956 TTTAAATAATTAT
1 TTTAATTAATTAT
8468969 TAAATTATAG
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 5 0.14
29 25 0.68
30 7 0.19
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (29 bp):
TTTAATTAATTATAATAAAAAGTTAAAAA
Found at i:8470208 original size:2 final size:2
Alignment explanation
Indices: 8470160--8470191 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8470150 ATACCTTGTA
8470160 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8470192 GATTATTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8480409 original size:23 final size:23
Alignment explanation
Indices: 8480367--8480410 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
8480357 CATAAAATTC
*
8480367 ATAAATAGATTAATAACATATAA
1 ATAAATAGATTAAAAACATATAA
8480390 ATAAATA-ATTAAAAATCATAT
1 ATAAATAGATTAAAAA-CATAT
8480411 GTTTATGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (23 bp):
ATAAATAGATTAAAAACATATAA
Found at i:8486521 original size:2 final size:2
Alignment explanation
Indices: 8486514--8486550 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
8486504 AGGAGAATGG
8486514 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8486551 TCTTTCTCCA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8488815 original size:17 final size:18
Alignment explanation
Indices: 8488790--8488825 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
8488780 GTTCTTCTGA
8488790 TTTTGTTTTTT-GGTTTT
1 TTTTGTTTTTTGGGTTTT
*
8488807 TTTTTTTTTTTGGGTTTT
1 TTTTGTTTTTTGGGTTTT
8488825 T
1 T
8488826 GAATAATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (18 bp):
TTTTGTTTTTTGGGTTTT
Found at i:8488816 original size:18 final size:18
Alignment explanation
Indices: 8488790--8488825 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8488780 GTTCTTCTGA
*
8488790 TTTTGTTTTTTGGTTTTT
1 TTTTGTTTTTGGGTTTTT
*
8488808 TTTTTTTTTTGGGTTTTT
1 TTTTGTTTTTGGGTTTTT
8488826 GAATAATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (18 bp):
TTTTGTTTTTGGGTTTTT
Found at i:8490148 original size:19 final size:19
Alignment explanation
Indices: 8490108--8490149 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
8490098 ATGAAAATTT
*
8490108 TAATTGTTAATATTATGAA
1 TAATTGTTAATATTATAAA
*
8490127 TAATTTTTAA-ATTATAATA
1 TAATTGTTAATATTATAA-A
8490146 TAAT
1 TAAT
8490150 ATTAAATTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (19 bp):
TAATTGTTAATATTATAAA
Found at i:8490529 original size:1 final size:1
Alignment explanation
Indices: 8490523--8490548 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
8490513 AAGGATTGGC
8490523 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
8490549 AAATAAAGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:8493394 original size:21 final size:22
Alignment explanation
Indices: 8493370--8493418 Score: 91
Period size: 21 Copynumber: 2.3 Consensus size: 22
8493360 CTTGACATTA
8493370 ATAAAATATTATTTTT-AAAAT
1 ATAAAATATTATTTTTAAAAAT
8493391 ATAAAATATTATTTTTAAAAAT
1 ATAAAATATTATTTTTAAAAAT
8493413 ATAAAA
1 ATAAAA
8493419 ATATAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 16 0.59
22 11 0.41
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
ATAAAATATTATTTTTAAAAAT
Found at i:8493419 original size:8 final size:8
Alignment explanation
Indices: 8493406--8493445 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
8493396 ATATTATTTT
8493406 TAAAAATA
1 TAAAAATA
8493414 TAAAAATA
1 TAAAAATA
8493422 TAAAAATA
1 TAAAAATA
*
8493430 -AATAAT-
1 TAAAAATA
8493436 TAAAAA-A
1 TAAAAATA
8493443 TAA
1 TAA
8493446 TTTTTAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
7 12 0.43
8 16 0.57
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (8 bp):
TAAAAATA
Found at i:8493439 original size:14 final size:15
Alignment explanation
Indices: 8493405--8493445 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
8493395 AATATTATTT
8493405 TTAAAAATATAAAAA
1 TTAAAAATATAAAAA
*
8493420 TATAAAAATA-AATAA
1 T-TAAAAATATAAAAA
8493435 TTAAAAA-ATAA
1 TTAAAAATATAA
8493446 TTTTTAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
13 1 0.04
14 8 0.35
15 6 0.26
16 8 0.35
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
TTAAAAATATAAAAA
Found at i:8493454 original size:21 final size:22
Alignment explanation
Indices: 8493370--8493454 Score: 66
Period size: 21 Copynumber: 3.9 Consensus size: 22
8493360 CTTGACATTA
* *
8493370 ATAAAATATTATTTTTAA-AAT
1 ATAAAAAATAATTTTTAATAAT
* * *
8493391 ATAAAATATTATTTTTAAAAAT
1 ATAAAAAATAATTTTTAATAAT
*** *
8493413 ATAAAAATATAAAAATAAATAAT
1 ATAAAAA-ATAATTTTTAATAAT
8493436 -TAAAAAATAATTTTTAATA
1 ATAAAAAATAATTTTTAATA
8493455 TAATATCAGT
Statistics
Matches: 51, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
21 27 0.53
22 15 0.29
23 9 0.18
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
ATAAAAAATAATTTTTAATAAT
Found at i:8500175 original size:15 final size:15
Alignment explanation
Indices: 8500152--8500182 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8500142 GAATTCTTTC
8500152 CAGCAGCCAATCTCT
1 CAGCAGCCAATCTCT
*
8500167 CAGCTGCCAATCTCT
1 CAGCAGCCAATCTCT
8500182 C
1 C
8500183 CTCCAGTGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.42, G:0.13, T:0.23
Consensus pattern (15 bp):
CAGCAGCCAATCTCT
Found at i:8504778 original size:39 final size:39
Alignment explanation
Indices: 8504719--8504795 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
8504709 ATCAAATGTG
*
8504719 ATTGTAAATTTTAATTAATGAAAGCTAATATAAAAGTTT
1 ATTGTAAATTTTAATCAATGAAAGCTAATATAAAAGTTT
*
8504758 ATTGTAAATTTTGATCAATGAAAGCTAATATAAAAGTT
1 ATTGTAAATTTTAATCAATGAAAGCTAATATAAAAGTT
8504796 CAAGTCAGTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.45, C:0.04, G:0.12, T:0.39
Consensus pattern (39 bp):
ATTGTAAATTTTAATCAATGAAAGCTAATATAAAAGTTT
Found at i:8504973 original size:23 final size:22
Alignment explanation
Indices: 8504926--8504975 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
8504916 AAAATAAATA
**
8504926 TTTTTACTATTTTTTATTTTTG
1 TTTTTACTATTTTTTATTTAGG
8504948 TTTTTACT-TTATTTTAATTTAGG
1 TTTTTACTATT-TTTT-ATTTAGG
8504971 TTTTT
1 TTTTT
8504976 TTGTTTTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 2 0.08
22 12 0.50
23 10 0.42
ACGTcount: A:0.16, C:0.04, G:0.06, T:0.74
Consensus pattern (22 bp):
TTTTTACTATTTTTTATTTAGG
Found at i:8509484 original size:15 final size:16
Alignment explanation
Indices: 8509456--8509493 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
8509446 TAATAACTAA
8509456 AAAAAATATAAAACAT
1 AAAAAATATAAAACAT
*
8509472 AAAAAAT-TCAAACAT
1 AAAAAATATAAAACAT
8509487 ATAAAAA
1 A-AAAAA
8509494 AATATAAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.74, C:0.08, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAAAATATAAAACAT
Found at i:8510356 original size:22 final size:20
Alignment explanation
Indices: 8510335--8510379 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
8510325 GATTTGTTAT
8510335 TATTAAAAATAAATATTTTTA
1 TATT-AAAATAAATATTTTTA
*
8510356 TA-TATAATAAATATTTTTAA
1 TATTAAAATAAATATTTTT-A
8510376 TATT
1 TATT
8510380 TTCATTTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 14 0.67
20 4 0.19
21 3 0.14
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TATTAAAATAAATATTTTTA
Found at i:8510378 original size:20 final size:19
Alignment explanation
Indices: 8510342--8510378 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
8510332 TATTATTAAA
8510342 AATAAATATTTTTATATAT
1 AATAAATATTTTTATATAT
8510361 AATAAATATTTTTA-ATAT
1 AATAAATATTTTTATATAT
8510379 TTTCATTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
AATAAATATTTTTATATAT
Found at i:8510615 original size:21 final size:21
Alignment explanation
Indices: 8510591--8510649 Score: 77
Period size: 21 Copynumber: 2.8 Consensus size: 21
8510581 TTGTGTAGCA
8510591 ATTTAACTTTTTTTTCTTTT-T
1 ATTT-ACTTTTTTTTCTTTTCT
8510612 ATTTA-TTTTTTTGTCTTTTCT
1 ATTTACTTTTTTT-TCTTTTCT
*
8510633 TTTTACTTTTTTTTCTT
1 ATTTACTTTTTTTTCTT
8510650 AATTTTTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
19 7 0.21
20 7 0.21
21 13 0.38
22 7 0.21
ACGTcount: A:0.10, C:0.10, G:0.02, T:0.78
Consensus pattern (21 bp):
ATTTACTTTTTTTTCTTTTCT
Found at i:8510655 original size:20 final size:19
Alignment explanation
Indices: 8510596--8510656 Score: 52
Period size: 22 Copynumber: 3.0 Consensus size: 19
8510586 TAGCAATTTA
*
8510596 ACTTTTTTTTCTTTTTATTT
1 ACTTTTTTTTCTTATT-TTT
*
8510616 A-TTTTTTTGTCTTTTCTTTTT
1 ACTTTTTTT-TC--TTATTTTT
8510637 ACTTTTTTTTCTTAATTTTT
1 ACTTTTTTTTCTT-ATTTTT
8510657 TTTTTTAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
19 9 0.26
20 8 0.24
21 6 0.18
22 11 0.32
ACGTcount: A:0.10, C:0.10, G:0.02, T:0.79
Consensus pattern (19 bp):
ACTTTTTTTTCTTATTTTT
Found at i:8510656 original size:26 final size:24
Alignment explanation
Indices: 8510601--8510663 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 24
8510591 ATTTAACTTT
*
8510601 TTTTTCTTTTTATTTATTTTTTTG
1 TTTTTCTTTTTATTTATTTTTTTA
8510625 TCTTTTCTTTTTACTTT-TTTTTCTTAA
1 T-TTTTCTTTTTA-TTTATTTTT-TT-A
*
8510652 TTTTTTTTTTTA
1 TTTTTCTTTTTA
8510664 ATTAGATCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 1 0.03
25 16 0.48
26 15 0.45
27 1 0.03
ACGTcount: A:0.10, C:0.08, G:0.02, T:0.81
Consensus pattern (24 bp):
TTTTTCTTTTTATTTATTTTTTTA
Found at i:8510664 original size:13 final size:13
Alignment explanation
Indices: 8510599--8510666 Score: 57
Period size: 13 Copynumber: 5.2 Consensus size: 13
8510589 CAATTTAACT
*
8510599 TTTTTTTCTTTTTA
1 TTTTTTT-TTTTAA
* *
8510613 TTTATTTTTTT-G
1 TTTTTTTTTTTAA
* *
8510625 TCTTTTCTTTTTAC
1 T-TTTTTTTTTTAA
*
8510639 TTTTTTTTCTTAA
1 TTTTTTTTTTTAA
8510652 TTTTTTTTTTTAA
1 TTTTTTTTTTTAA
8510665 TT
1 TT
8510667 AGATCAATTA
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
12 1 0.02
13 35 0.81
14 7 0.16
ACGTcount: A:0.10, C:0.07, G:0.01, T:0.81
Consensus pattern (13 bp):
TTTTTTTTTTTAA
Found at i:8510985 original size:23 final size:24
Alignment explanation
Indices: 8510954--8510999 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
8510944 CAAGTATATA
8510954 TATTAAATTATAT-TTTAATTATT
1 TATTAAATTATATGTTTAATTATT
* * *
8510977 TATTTAATTTTATGTTTATTTAT
1 TATTAAATTATATGTTTAATTAT
8511000 ATGTATTATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (24 bp):
TATTAAATTATATGTTTAATTATT
Found at i:8511425 original size:13 final size:13
Alignment explanation
Indices: 8511396--8511434 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
8511386 AATCAATTTA
8511396 AATATATTAAAAT
1 AATATATTAAAAT
8511409 --TATATTAAAAT
1 AATATATTAAAAT
*
8511420 AATATATAAAAAT
1 AATATATTAAAAT
8511433 AA
1 AA
8511435 AAAATTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
11 11 0.48
13 12 0.52
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
AATATATTAAAAT
Found at i:8511644 original size:20 final size:22
Alignment explanation
Indices: 8511619--8511664 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 22
8511609 AACGAGTTTT
*
8511619 TTTTTTTAA-AT-CTTTTTGGG
1 TTTTTTTAATATAATTTTTGGG
8511639 -TTTTTTAATATAATTTTTGGG
1 TTTTTTTAATATAATTTTTGGG
8511660 TTTTT
1 TTTTT
8511665 AATGTTTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 8 0.36
20 2 0.09
21 8 0.36
22 4 0.18
ACGTcount: A:0.17, C:0.02, G:0.13, T:0.67
Consensus pattern (22 bp):
TTTTTTTAATATAATTTTTGGG
Done.