Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 46 of 117
Found at i:8511739 original size:2 final size:2
Alignment explanation
Indices: 8511732--8511769 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
8511722 TATTTGTATG
8511732 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8511770 CATACAAATG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8512582 original size:20 final size:21
Alignment explanation
Indices: 8512544--8512584 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
8512534 TATTATTAAA
*
8512544 AATAAATATTTTTTTATATTT
1 AATAAATATTTTTTAATATTT
8512565 AATAAATA-TTTTTAATATTT
1 AATAAATATTTTTTAATATTT
8512585 TTAATTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
AATAAATATTTTTTAATATTT
Found at i:8512589 original size:22 final size:21
Alignment explanation
Indices: 8512544--8512584 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8512534 TATTATTAAA
*
8512544 AATAAATATTTTTTTATATTT
1 AATAAATATTTTTATATATTT
8512565 AATAAATATTTTTA-ATATTT
1 AATAAATATTTTTATATATTT
8512585 TTAATTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
AATAAATATTTTTATATATTT
Found at i:8512941 original size:16 final size:15
Alignment explanation
Indices: 8512922--8512962 Score: 64
Period size: 16 Copynumber: 2.7 Consensus size: 15
8512912 TGCCTTCTAT
8512922 TTATTTTATTTTTTAA
1 TTATTTTATTTTTT-A
8512938 TTATTTTATTTTTTA
1 TTATTTTATTTTTTA
*
8512953 TTTTTTTATT
1 TTATTTTATT
8512963 AGATAAATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (15 bp):
TTATTTTATTTTTTA
Found at i:8512951 original size:7 final size:7
Alignment explanation
Indices: 8512925--8512958 Score: 50
Period size: 7 Copynumber: 4.6 Consensus size: 7
8512915 CTTCTATTTA
8512925 TTTTATT
1 TTTTATT
8512932 TTTTAATT
1 TTTT-ATT
8512940 ATTTTATT
1 -TTTTATT
8512948 TTTTATT
1 TTTTATT
8512955 TTTT
1 TTTT
8512959 TATTAGATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 15 0.60
8 6 0.24
9 4 0.16
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTATT
Found at i:8512959 original size:8 final size:8
Alignment explanation
Indices: 8512919--8512962 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
8512909 TTTTGCCTTC
8512919 TATTTATTT
1 TATTT-TTT
8512928 TATTTTTT
1 TATTTTTT
* *
8512936 AATTATTT
1 TATTTTTT
8512944 TA-TTTTT
1 TATTTTTT
8512951 TATTTTTT
1 TATTTTTT
8512959 TATT
1 TATT
8512963 AGATAAATTG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
7 6 0.20
8 19 0.63
9 5 0.17
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (8 bp):
TATTTTTT
Found at i:8513690 original size:24 final size:25
Alignment explanation
Indices: 8513651--8513716 Score: 73
Period size: 24 Copynumber: 2.6 Consensus size: 25
8513641 TAAAAATAAT
* *
8513651 AATAATAATAATTATATTTATGATTAA
1 AATAA-AAT-ATTATAATTATAATTAA
*
8513678 AA-AAATTATTATAATTATAATTAA
1 AATAAAATATTATAATTATAATTAA
8513702 AATAAAATATT-TAAT
1 AATAAAATATTATAAT
8513717 AAAAAATTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
24 21 0.62
25 9 0.26
26 2 0.06
27 2 0.06
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (25 bp):
AATAAAATATTATAATTATAATTAA
Found at i:8522864 original size:20 final size:20
Alignment explanation
Indices: 8522839--8522876 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8522829 TGTAGAATAG
8522839 TGAATGCAATTATGTTCACA
1 TGAATGCAATTATGTTCACA
**
8522859 TGAATGTTATTATGTTCA
1 TGAATGCAATTATGTTCA
8522877 TTCACGGATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.42
Consensus pattern (20 bp):
TGAATGCAATTATGTTCACA
Found at i:8524748 original size:24 final size:23
Alignment explanation
Indices: 8524721--8524785 Score: 62
Period size: 24 Copynumber: 2.7 Consensus size: 23
8524711 TGGCATATCT
8524721 ATTTATTTTCCATATATAATCT-TA
1 ATTTATTTTCCATATA-AAT-TATA
*
8524745 ATTTTATTTT-TATATAAATTAATA
1 A-TTTATTTTCCATATAAATT-ATA
*
8524769 ATTTGTTTTCCATATAA
1 ATTTATTTTCCATATAA
8524786 GCCAGATGCA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
22 1 0.03
23 10 0.29
24 15 0.44
25 8 0.24
ACGTcount: A:0.35, C:0.08, G:0.02, T:0.55
Consensus pattern (23 bp):
ATTTATTTTCCATATAAATTATA
Found at i:8527122 original size:3 final size:3
Alignment explanation
Indices: 8527114--8527141 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
8527104 TTAATTTAAA
8527114 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
8527142 TAGTATCGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:8528065 original size:20 final size:19
Alignment explanation
Indices: 8528007--8528067 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 19
8527997 ATTTTAGGTA
8528007 TTTTTATCATTATTTTTT-AT
1 TTTTTAT-A-TATTTTTTAAT
*
8528027 TTTTTAT-TTTTTTCTTAAT
1 TTTTTATATATTTT-TTAAT
8528046 TTTTTATATATTTTTATAAT
1 TTTTTATATATTTTT-TAAT
8528066 TT
1 TT
8528068 AATTATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
17 5 0.14
18 2 0.06
19 10 0.29
20 18 0.51
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTTTATATATTTTTTAAT
Found at i:8528246 original size:14 final size:15
Alignment explanation
Indices: 8528229--8528263 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
8528219 TTAAATAATT
8528229 TTAAAATAA-TAAAA
1 TTAAAATAATTAAAA
8528243 TT-AAATAATTAAAA
1 TTAAAATAATTAAAA
8528257 TTAAAAT
1 TTAAAAT
8528264 TTTAATGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 6 0.32
14 9 0.47
15 4 0.21
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
TTAAAATAATTAAAA
Found at i:8528300 original size:26 final size:25
Alignment explanation
Indices: 8528271--8528320 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
8528261 AATTTTAATG
8528271 AACAAGAATAAAGAAA-AATATAAAAA
1 AACAAGAATAAA-AAATAA-ATAAAAA
*
8528297 AACAATAATAAAAAATAAATAAAA
1 AACAAGAATAAAAAATAAATAAAA
8528321 TATGATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.78, C:0.04, G:0.04, T:0.14
Consensus pattern (25 bp):
AACAAGAATAAAAAATAAATAAAAA
Found at i:8528317 original size:14 final size:13
Alignment explanation
Indices: 8528277--8528318 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
8528267 AATGAACAAG
*
8528277 AATAAAGAAAAAT
1 AATAAAAAAAAAT
8528290 -ATAAAAAAACAAT
1 AATAAAAAAA-AAT
8528303 AATAAAAAATAAAT
1 AATAAAAAA-AAAT
8528317 AA
1 AA
8528319 AATATGATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
12 8 0.32
13 3 0.12
14 13 0.52
15 1 0.04
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (13 bp):
AATAAAAAAAAAT
Found at i:8537578 original size:15 final size:15
Alignment explanation
Indices: 8537554--8537584 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8537544 TATTAAGTGT
*
8537554 AATGAGTGAGAATGC
1 AATGAATGAGAATGC
8537569 AATGAATGAGAATGC
1 AATGAATGAGAATGC
8537584 A
1 A
8537585 CGTATGCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.29, T:0.19
Consensus pattern (15 bp):
AATGAATGAGAATGC
Found at i:8540240 original size:59 final size:59
Alignment explanation
Indices: 8540118--8540334 Score: 298
Period size: 59 Copynumber: 3.7 Consensus size: 59
8540108 TTGTACAGAA
* * *
8540118 AAAATTGATACTTTCAACTTTT-CTC-AAAATA-TTTTTTAAAAAACTTTAATTTCGAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTAGAAAAC-TTAATTTCAAGG
* *
8540175 AAAATTGATACTTTCAACTTTT-CTCCAAAAATATTTTTTTAGAAAGCTTAGTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCT-CAAAAATATTTTTTTAGAAAACTTAATTTCAAGG
* *
8540234 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAAATTTAATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTAG-AAAACTTAA-TTTCAAGG
*
8540295 AAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTT
8540335 GAATTTTATT
Statistics
Matches: 144, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
57 24 0.17
58 1 0.01
59 53 0.37
60 19 0.13
61 47 0.33
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.44
Consensus pattern (59 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTAGAAAACTTAATTTCAAGG
Found at i:8540311 original size:120 final size:116
Alignment explanation
Indices: 8540118--8540334 Score: 330
Period size: 120 Copynumber: 1.8 Consensus size: 116
8540108 TTGTACAGAA
*
8540118 AAAATTGATACTTTCAACTTTTCTCAAAATATTTTTTAAAAAACTTTAATTTCGAGAAAAATTGA
1 AAAATTGATACTTTCAACTTTTCTCAAAATATTTTTTAAAAAACTTTAATTTCAAGAAAAATTGA
8540183 TACTTTCAACTTTT-CTCCAAAAATATTTTTTTAGAAAGCTTAGTTTCAAGG
66 TACTTTCAACTTTTCCT-CAAAAATATTTTTTTAGAAAGCTTAGTTTCAAGG
* *
8540234 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAAA-TTTAATTTTCAAGGAAA
1 AAAATTGATACTTTCAACTTTT-CTC-AAAATA--TTTTTTAAAAAACTTTAA-TTTCAAGAAAA
*
8540298 ATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTT
61 ATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTT
8540335 GAATTTTATT
Statistics
Matches: 91, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
116 22 0.24
117 3 0.03
118 6 0.07
119 5 0.05
120 53 0.58
121 2 0.02
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.44
Consensus pattern (116 bp):
AAAATTGATACTTTCAACTTTTCTCAAAATATTTTTTAAAAAACTTTAATTTCAAGAAAAATTGA
TACTTTCAACTTTTCCTCAAAAATATTTTTTTAGAAAGCTTAGTTTCAAGG
Found at i:8540358 original size:5 final size:5
Alignment explanation
Indices: 8540350--8540438 Score: 101
Period size: 5 Copynumber: 16.8 Consensus size: 5
8540340 TTATTTAAAG
8540350 AAAAT AAAAT AAAAT --AAT AAAAT AAAAAT AAAAAT AAAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT -AAAAT -AAAAT AAAAT
8540396 AAAAT GAAAAT AAAAAT AAAAT GAAAAT AAAAAT AAAAT AAAA
1 AAAAT -AAAAT -AAAAT AAAAT -AAAAT -AAAAT AAAAT AAAA
8540439 GGTATTAAAC
Statistics
Matches: 77, Mismatches: 2, Indels: 10
0.87 0.02 0.11
Matches are distributed among these distances:
3 3 0.04
5 37 0.48
6 37 0.48
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:8540379 original size:6 final size:6
Alignment explanation
Indices: 8540350--8540438 Score: 100
Period size: 6 Copynumber: 15.5 Consensus size: 6
8540340 TTATTTAAAG
8540350 AAAAT- AAAAT- AAAATAA TAAAATA AAAATA AAAATA AAAAT- AAAAT-
1 AAAATA AAAATA AAAAT-A -AAAATA AAAATA AAAATA AAAATA AAAATA
* *
8540396 AAAATG AAAATA AAAAT- AAAATG AAAATA AAAAT- AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAA
8540439 GGTATTAAAC
Statistics
Matches: 76, Mismatches: 2, Indels: 11
0.85 0.02 0.12
Matches are distributed among these distances:
5 30 0.39
6 40 0.53
7 1 0.01
8 5 0.07
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:8540387 original size:17 final size:17
Alignment explanation
Indices: 8540350--8540438 Score: 119
Period size: 17 Copynumber: 5.2 Consensus size: 17
8540340 TTATTTAAAG
8540350 AAAAT-AAAATAAAATAA
1 AAAATAAAAATAAAAT-A
8540367 TAAAATAAAAATAAAAATA
1 -AAAATAAAAAT-AAAATA
*
8540386 AAAAT-AAAATAAAATG
1 AAAATAAAAATAAAATA
*
8540402 AAAATAAAAATAAAATG
1 AAAATAAAAATAAAATA
8540419 AAAATAAAAATAAAATA
1 AAAATAAAAATAAAATA
8540436 AAA
1 AAA
8540439 GGTATTAAAC
Statistics
Matches: 66, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
16 10 0.15
17 35 0.53
18 10 0.15
19 6 0.09
20 5 0.08
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (17 bp):
AAAATAAAAATAAAATA
Found at i:8540501 original size:4 final size:4
Alignment explanation
Indices: 8540492--8540522 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
8540482 CAATAATAAT
8540492 AATA AATA AATA AATA AATA AATAA AATA AA
1 AATA AATA AATA AATA AATA AAT-A AATA AA
8540523 AAAAAAACCT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:8540507 original size:12 final size:13
Alignment explanation
Indices: 8540464--8540522 Score: 61
Period size: 13 Copynumber: 4.5 Consensus size: 13
8540454 TAATCTAATC
8540464 AATAAAT-AATAA
1 AATAAATAAATAA
8540476 TAATAACA-ATAATAA
1 -AATAA-ATA-AATAA
8540491 TAATAAATAAAT-A
1 -AATAAATAAATAA
8540504 AATAAATAAATAA
1 AATAAATAAATAA
8540517 AATAAA
1 AATAAA
8540523 AAAAAAACCT
Statistics
Matches: 41, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
12 11 0.27
13 13 0.32
14 5 0.12
15 12 0.29
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (13 bp):
AATAAATAAATAA
Found at i:8541025 original size:24 final size:22
Alignment explanation
Indices: 8540998--8541041 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
8540988 TGGAAAATTT
*
8540998 TCAAAAATTTCTAGAAAAAAATCA
1 TCAAAAAATTC-A-AAAAAAATCA
8541022 TCAAAAAATTCAAAAAAAAT
1 TCAAAAAATTCAAAAAAAAT
8541042 TTTCACTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 1 0.05
24 10 0.53
ACGTcount: A:0.64, C:0.11, G:0.02, T:0.23
Consensus pattern (22 bp):
TCAAAAAATTCAAAAAAAATCA
Found at i:8541291 original size:14 final size:14
Alignment explanation
Indices: 8541272--8541312 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
8541262 TCGGGTAAGC
8541272 AGAAAA-AAGAAAGA
1 AGAAAAGAAGAAA-A
8541286 AGAAAAGAAGAAAA
1 AGAAAAGAAGAAAA
8541300 AGAAAAGAA-AAAA
1 AGAAAAGAAGAAAA
8541313 TAAACAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.15
14 16 0.62
15 6 0.23
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (14 bp):
AGAAAAGAAGAAAA
Found at i:8541352 original size:3 final size:3
Alignment explanation
Indices: 8541326--8541446 Score: 52
Period size: 3 Copynumber: 37.3 Consensus size: 3
8541316 ACAAATAAAG
* *
8541326 ATA AT- ATA TTA ATA GATAA ATA ATA ATG ATA ATGA ATAA ATA ATA ATA
1 ATA ATA ATA ATA ATA -AT-A ATA ATA ATA ATA AT-A AT-A ATA ATA ATA
* *
8541374 A-A AT- ATA TATCA ACAA ATAA ATA ATA ATA AT- ATA TTA ATAA ATA
1 ATA ATA ATA -AT-A A-TA AT-A ATA ATA ATA ATA ATA ATA AT-A ATA
*
8541418 GTA ATA ATAA ATAA ATAA ATAA ATA ATA A
1 ATA ATA AT-A AT-A AT-A AT-A ATA ATA A
8541447 AAAATAAAAT
Statistics
Matches: 94, Mismatches: 11, Indels: 26
0.72 0.08 0.20
Matches are distributed among these distances:
2 8 0.09
3 48 0.51
4 36 0.38
5 2 0.02
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:8541367 original size:4 final size:4
Alignment explanation
Indices: 8541310--8541454 Score: 60
Period size: 4 Copynumber: 37.8 Consensus size: 4
8541300 AGAAAAGAAA
* * * * *
8541310 AAAT AAAC AAAT AAAG ATAAT ATAT TAAT AGAT AAAT -AAT -AAT GATAAT
1 AAAT AAAT AAAT AAAT A-AAT AAAT AAAT AAAT AAAT AAAT AAAT -A-AAT
* * * * *
8541359 GAAT AAAT -AAT -AAT AAA- ATAT ATAT CAAC AAAT AAAT -AAT -AAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
* *
8541402 -AAT ATAT TAAT AAAT AGTAAT -AAT AAAT AAAT AAAT AAAT -AAT AAA-
1 AAAT AAAT AAAT AAAT A--AAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
8541448 AAAT AAA
1 AAAT AAA
8541455 ATGGGCCTAC
Statistics
Matches: 107, Mismatches: 22, Indels: 24
0.70 0.14 0.16
Matches are distributed among these distances:
3 32 0.30
4 66 0.62
5 3 0.03
6 6 0.06
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.28
Consensus pattern (4 bp):
AAAT
Found at i:8541413 original size:21 final size:21
Alignment explanation
Indices: 8541311--8541454 Score: 96
Period size: 22 Copynumber: 6.5 Consensus size: 21
8541301 GAAAAGAAAA
*
8541311 AATAAACAAATAAAGATAATATATT
1 AATAAATAAAT-AA-ATAATA-A-T
* *
8541336 AATAGATAAAT-AATAATGAT
1 AATAAATAAATAAATAATAAT
*
8541356 AATGAATAAAT-AATAATAA-
1 AATAAATAAATAAATAATAAT
* *
8541375 AATATATATCAACAAATAAATAAT
1 AATA-A-ATAAATAAAT-AATAAT
*
8541399 AATAATATATTAATAAATAGTAAT
1 AATAA-ATA--AATAAATAATAAT
8541423 AATAAATAAATAAATAAATAAT
1 AATAAATAAATAAAT-AATAAT
*
8541445 AAAAAATAAA
1 AATAAATAAA
8541455 ATGGGCCTAC
Statistics
Matches: 97, Mismatches: 14, Indels: 19
0.75 0.11 0.15
Matches are distributed among these distances:
19 3 0.03
20 18 0.19
21 12 0.12
22 22 0.23
23 13 0.13
24 14 0.14
25 15 0.15
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.28
Consensus pattern (21 bp):
AATAAATAAATAAATAATAAT
Found at i:8541414 original size:46 final size:48
Alignment explanation
Indices: 8541341--8541453 Score: 112
Period size: 46 Copynumber: 2.4 Consensus size: 48
8541331 ATATTAATAG
* *
8541341 ATAAATAATAATGATAATGAATAAAT-AATAATAA-AATATATATCAACAA
1 ATAAATAATAATAATAAT-AATAAATAAATAATAATAATA-A-ATAAACAA
* * *
8541390 ATAAATAATAATAAT-AT-ATTAATAAATAGTAATAATAAATAAATAA
1 ATAAATAATAATAATAATAATAAATAAATAATAATAATAAATAAACAA
8541436 ATAAATAATAA-AA-AATAA
1 ATAAATAATAATAATAATAA
8541454 AATGGGCCTA
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
45 4 0.07
46 23 0.42
47 8 0.15
48 6 0.11
49 14 0.25
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (48 bp):
ATAAATAATAATAATAATAATAAATAAATAATAATAATAAATAAACAA
Found at i:8541416 original size:25 final size:25
Alignment explanation
Indices: 8541311--8541446 Score: 135
Period size: 25 Copynumber: 5.6 Consensus size: 25
8541301 GAAAAGAAAA
*
8541311 AATAAACAAATAA-AGATAATATATT
1 AATAAATAAATAATA-ATAATATATT
* * *
8541336 AATAGATAAATAATAATGATA-ATG
1 AATAAATAAATAATAATAATATATT
8541360 AATAAAT-AATAATAA-AATATATAT
1 AATAAATAAATAATAATAATATAT-T
*
8541384 CAACAAATAAATAATAATAATATATT
1 -AATAAATAAATAATAATAATATATT
*
8541410 AATAAAT-AGTAATAATAA-ATA--
1 AATAAATAAATAATAATAATATATT
8541431 AATAAATAAATAATAA
1 AATAAATAAATAATAA
8541447 AAAATAAAAT
Statistics
Matches: 93, Mismatches: 11, Indels: 17
0.77 0.09 0.14
Matches are distributed among these distances:
21 7 0.08
22 10 0.11
23 13 0.14
24 18 0.19
25 28 0.30
26 10 0.11
27 7 0.08
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (25 bp):
AATAAATAAATAATAATAATATATT
Found at i:8542282 original size:39 final size:39
Alignment explanation
Indices: 8542220--8542310 Score: 96
Period size: 39 Copynumber: 2.3 Consensus size: 39
8542210 TGTAATAAAA
8542220 TTTTATTTATTTTAAGTAGTTATTATTA-TTAAATTTT-T
1 TTTTATTTATTTTAAGTAGTTATT-TTATTTAAATTTTAT
* * ** *
8542258 TATTTATTTTTTTTAGGTTTTTATTTTATTTCAATTTTAT
1 T-TTTATTTATTTTAAGTAGTTATTTTATTTAAATTTTAT
8542298 TTTTATTCTATTT
1 TTTTATT-TATTT
8542311 ATTTAATTGT
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
38 4 0.09
39 33 0.77
40 6 0.14
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.70
Consensus pattern (39 bp):
TTTTATTTATTTTAAGTAGTTATTTTATTTAAATTTTAT
Found at i:8542361 original size:22 final size:20
Alignment explanation
Indices: 8542330--8542376 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 20
8542320 TTTTTTAAAA
8542330 AATAAAAATATTACTAGTAAT
1 AATAAAAATATTAC-AGTAAT
8542351 AATATAAAATA--ACAGTAAT
1 AATA-AAAATATTACAGTAAT
8542370 AATAAAA
1 AATAAAA
8542377 TAATATTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 3 0.12
19 10 0.40
20 2 0.08
21 4 0.16
22 6 0.24
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (20 bp):
AATAAAAATATTACAGTAAT
Found at i:8545346 original size:22 final size:23
Alignment explanation
Indices: 8545318--8545393 Score: 93
Period size: 22 Copynumber: 3.3 Consensus size: 23
8545308 TCTTATTTAT
**
8545318 TTATTTATTGCTATTAT-TATTA
1 TTATTTATTAATATTATATATTA
*
8545340 TTATTTATTAATA-TATATATTT
1 TTATTTATTAATATTATATATTA
*
8545362 TTATCTATTAATATATATATATTA
1 TTATTTATTAATAT-TATATATTA
8545386 TTATTTAT
1 TTATTTAT
8545394 CTATTAATGT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
21 3 0.07
22 27 0.60
24 15 0.33
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (23 bp):
TTATTTATTAATATTATATATTA
Found at i:8545381 original size:28 final size:28
Alignment explanation
Indices: 8545350--8545471 Score: 118
Period size: 26 Copynumber: 4.6 Consensus size: 28
8545340 TTATTTATTA
8545350 ATATATATATTTTTATCTATTAATATAT
1 ATATATATATTTTTATCTATTAATATAT
*
8545378 ATATAT-TATTATTTATCTATT-A-ATGT
1 ATATATATATT-TTTATCTATTAATATAT
*
8545404 ATATA-A-ATTTTTAT-TGTTAACTAT-T
1 ATATATATATTTTTATCTATTAA-TATAT
* *
8545429 ATCTAT-TA-TTTTATCTATTAGTATAT
1 ATATATATATTTTTATCTATTAATATAT
8545455 ATATATATATTTATTAT
1 ATATATATATTT-TTAT
8545472 TTATCTATTT
Statistics
Matches: 76, Mismatches: 6, Indels: 23
0.72 0.06 0.22
Matches are distributed among these distances:
23 3 0.04
24 6 0.08
25 17 0.22
26 21 0.28
27 7 0.09
28 18 0.24
29 4 0.05
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.57
Consensus pattern (28 bp):
ATATATATATTTTTATCTATTAATATAT
Found at i:8545428 original size:30 final size:29
Alignment explanation
Indices: 8545360--8545429 Score: 88
Period size: 28 Copynumber: 2.4 Consensus size: 29
8545350 ATATATATAT
*
8545360 TTTTATCTATTAATATATATATATTATTA
1 TTTTATCTATTAATATATATAAATTATTA
* *
8545389 -TTTATCTATTAATGTATATAAATTTTTA
1 TTTTATCTATTAATATATATAAATTATTA
*
8545417 TTGTTAACTATTA
1 TT-TTATCTATTA
8545430 TCTATTATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
28 25 0.71
29 1 0.03
30 9 0.26
ACGTcount: A:0.36, C:0.04, G:0.03, T:0.57
Consensus pattern (29 bp):
TTTTATCTATTAATATATATAAATTATTA
Found at i:8546297 original size:11 final size:11
Alignment explanation
Indices: 8546281--8546306 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8546271 ATATTTCTTA
8546281 TTTTATTTTAT
1 TTTTATTTTAT
8546292 TTTTATTTTAT
1 TTTTATTTTAT
8546303 TTTT
1 TTTT
8546307 TAAAATGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTATTTTAT
Found at i:8546299 original size:16 final size:17
Alignment explanation
Indices: 8546272--8546305 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
8546262 AATTATTTAA
8546272 TATTTCTTATTTTATTT
1 TATTTCTTATTTTATTT
8546289 TATTT-TTATTTTATTT
1 TATTTCTTATTTTATTT
8546305 T
1 T
8546306 TTAAAATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (17 bp):
TATTTCTTATTTTATTT
Found at i:8546457 original size:14 final size:14
Alignment explanation
Indices: 8546397--8546457 Score: 61
Period size: 14 Copynumber: 4.3 Consensus size: 14
8546387 TGAAAGTAAG
8546397 TTTTCTAAAAAATA
1 TTTTCTAAAAAATA
* *
8546411 TTTTCGAAGAAAT-
1 TTTTCTAAAAAATA
**
8546424 TTTTCTTGAAAATAA
1 TTTTCTAAAAAAT-A
8546439 GTTTTCTAAAAAATA
1 -TTTTCTAAAAAATA
8546454 TTTT
1 TTTT
8546458 TGAGAAAAAG
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
13 9 0.25
14 15 0.42
15 1 0.03
16 11 0.31
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.46
Consensus pattern (14 bp):
TTTTCTAAAAAATA
Found at i:8546490 original size:30 final size:30
Alignment explanation
Indices: 8546456--8546545 Score: 71
Period size: 30 Copynumber: 3.0 Consensus size: 30
8546446 AAAAAATATT
8546456 TTTGAGAAAAAGTTGAAAGTATCAATTTTC
1 TTTGAGAAAAAGTTGAAAGTATCAATTTTC
* * ** *
8546486 TTTGA-AAATAATTTTCTAAA--AAAAAGGTTT-
1 TTTGAGAAA-AA-GTT-GAAAGTATCAA-TTTTC
8546516 TTTGAGAAAAAGTTGAAAGTATCAATTTTC
1 TTTGAGAAAAAGTTGAAAGTATCAATTTTC
8546546 CTCGAAATTA
Statistics
Matches: 42, Mismatches: 10, Indels: 16
0.62 0.15 0.24
Matches are distributed among these distances:
28 3 0.07
29 8 0.19
30 20 0.48
31 8 0.19
32 3 0.07
ACGTcount: A:0.42, C:0.06, G:0.14, T:0.38
Consensus pattern (30 bp):
TTTGAGAAAAAGTTGAAAGTATCAATTTTC
Found at i:8546530 original size:60 final size:57
Alignment explanation
Indices: 8546424--8546606 Score: 203
Period size: 57 Copynumber: 3.1 Consensus size: 57
8546414 TCGAAGAAAT
*
8546424 TTTTCTTGAAAATAAGTTTTCTAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAA
1 TTTTCTTGAAAATAAGTTTTCTAAAAAAAATTTTTGAGAAAAAGTTGAAAGTATCAA
8546481 TTTTCTTTGAAAATAA-TTTTCTAAAAAAAAGGTTTTTTGAGAAAAAGTTGAAAGTATCAA
1 TTTTC-TTGAAAATAAGTTTTCTAAAAAAAA---TTTTTGAGAAAAAGTTGAAAGTATCAA
* * * * * *
8546541 TTTTCCTCGAAATTAAAG-TTT-T-AGAAAAATATTTTGGGGAAAAGTTGAAAGTATTAA
1 TTTT-CTTGAAAAT-AAGTTTTCTAAAAAAAAT-TTTTGAGAAAAAGTTGAAAGTATCAA
8546598 TTTTTCTTG
1 -TTTTCTTG
8546607 TACAAAAGTA
Statistics
Matches: 109, Mismatches: 8, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
56 1 0.01
57 44 0.40
58 14 0.13
59 6 0.06
60 38 0.35
61 6 0.06
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.40
Consensus pattern (57 bp):
TTTTCTTGAAAATAAGTTTTCTAAAAAAAATTTTTGAGAAAAAGTTGAAAGTATCAA
Found at i:8556859 original size:273 final size:272
Alignment explanation
Indices: 8556372--8556918 Score: 1031
Period size: 273 Copynumber: 2.0 Consensus size: 272
8556362 TTATTTTAGA
*
8556372 CAATGCTAAGAATCTAAATAGTAAGATGATGCAAAAAATATGTGCTCAATATAAGATCAAGCATC
1 CAATGCTAAGAATCTAAATAGTAAGATGATGCAAAAAATATATGCTCAATATAAGATCAAGCATC
* *
8556437 ATAACTTGGTACCATACTATCCGAAAATGAATGAGGCAGTTGAGGCGACAAACAAGAATATAAAA
66 ATAACTCGATACCATACTATCCGAAAATGAATGAGGCAGTTGAGGCGACAAACAAGAATATAAAA
8556502 AAAATTCTTGAAAAGATGACTGAGACCTATAAAGATTAGCATGAGAAGTTGCTATTTGCACTACA
131 AAAATTCTTGAAAAGATGACTGAGACCTATAAAGATTAGCATGAGAAGTTGCTATTTGCACTACA
*
8556567 TACATATCGAACATCAGTGCACACCTTTACTGGGGCAATCTTATTTTTTTTTTGTTTATGGGATG
196 TACATATCGAACATCAGTGCACACCTCTACTGGGGCAATCTTA-TTTTTTTTTGTTTATGGGATG
8556632 AAAGTTGTACTAC
260 AAAGTTGTACTAC
8556645 CAATGCTAAGAATCTAAATAGTAAGATGATGCAAAAAATATATGCTCAATATAAGATCAAGCATC
1 CAATGCTAAGAATCTAAATAGTAAGATGATGCAAAAAATATATGCTCAATATAAGATCAAGCATC
* *
8556710 ATAACTCGATACCATACTATCCGAAAATGAATGAGGCAGTTGAGGTGACAAATAAGAATATAAAA
66 ATAACTCGATACCATACTATCCGAAAATGAATGAGGCAGTTGAGGCGACAAACAAGAATATAAAA
8556775 AAAATTCTTGAAAAGATGACTGAGACCTATAAAGATTAGCATGAGAAGTTGCTATTTGCACTACA
131 AAAATTCTTGAAAAGATGACTGAGACCTATAAAGATTAGCATGAGAAGTTGCTATTTGCACTACA
8556840 TACATATCGAACATCAGTGCACACCTCTACTGGGGCAATCTTATTTTTTTTTGTTTATGGGATGA
196 TACATATCGAACATCAGTGCACACCTCTACTGGGGCAATCTTATTTTTTTTTGTTTATGGGATGA
8556905 AAGTTGTACTAC
261 AAGTTGTACTAC
8556917 CA
1 CA
8556919 GTGAAAGTGG
Statistics
Matches: 268, Mismatches: 6, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
272 36 0.13
273 232 0.87
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (272 bp):
CAATGCTAAGAATCTAAATAGTAAGATGATGCAAAAAATATATGCTCAATATAAGATCAAGCATC
ATAACTCGATACCATACTATCCGAAAATGAATGAGGCAGTTGAGGCGACAAACAAGAATATAAAA
AAAATTCTTGAAAAGATGACTGAGACCTATAAAGATTAGCATGAGAAGTTGCTATTTGCACTACA
TACATATCGAACATCAGTGCACACCTCTACTGGGGCAATCTTATTTTTTTTTGTTTATGGGATGA
AAGTTGTACTAC
Found at i:8557324 original size:17 final size:15
Alignment explanation
Indices: 8557302--8557336 Score: 52
Period size: 17 Copynumber: 2.2 Consensus size: 15
8557292 TACTATGCTT
8557302 AAAAAAAGGTAAAAACA
1 AAAAAAAGG-AAAAA-A
8557319 AAAAAAAGGAAAAAA
1 AAAAAAAGGAAAAAA
8557334 AAA
1 AAA
8557337 GAATGAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.22
16 5 0.28
17 9 0.50
ACGTcount: A:0.83, C:0.03, G:0.11, T:0.03
Consensus pattern (15 bp):
AAAAAAAGGAAAAAA
Found at i:8558479 original size:44 final size:43
Alignment explanation
Indices: 8558360--8558624 Score: 317
Period size: 42 Copynumber: 6.2 Consensus size: 43
8558350 AAGTTGTGAT
* * *
8558360 GCCTCTGTTTAGAGGAACTTTGTTTATTTTTCAAAGTCGTTGA
1 GCCTCTGTTTAAAGGAGCTTTGTTTATTTTTAAAAGTCGTTGA
*
8558403 GCCTCTGTTT-AAGGAGCTTTGTTTATTTTTTAAAAGTCATTGA
1 GCCTCTGTTTAAAGGAGCTTTGTTTA-TTTTTAAAAGTCGTTGA
*
8558446 GCCTCTGTCTAAAGGAGCTTTGTTTATTGTTT--AAGTCGTTGA
1 GCCTCTGTTTAAAGGAGCTTTGTTTATT-TTTAAAAGTCGTTGA
* **
8558488 GCCTCTGTTTAAATGAGCTTTGTTTATTTTTCAAAAGTTATTGA
1 GCCTCTGTTTAAAGGAGCTTTGTTTATTTTT-AAAAGTCGTTGA
* * * *
8558532 GCCTCTGTGTAGAGGAACTTTGTTTATTGGTT--AAGTCGTTGA
1 GCCTCTGTTTAAAGGAGCTTTGTTTATT-TTTAAAAGTCGTTGA
*
8558574 GCCTCTGTTTAGAA-GAGCTTGGTTTATTTTTCAAAAGTCGTTGA
1 GCCTCTGTTTA-AAGGAGCTTTGTTTATTTTT-AAAAGTCGTTGA
8558618 GCCTCTG
1 GCCTCTG
8558625 ATTAGGGGAA
Statistics
Matches: 189, Mismatches: 22, Indels: 21
0.81 0.09 0.09
Matches are distributed among these distances:
41 5 0.03
42 78 0.41
43 37 0.20
44 67 0.35
45 2 0.01
ACGTcount: A:0.21, C:0.14, G:0.22, T:0.43
Consensus pattern (43 bp):
GCCTCTGTTTAAAGGAGCTTTGTTTATTTTTAAAAGTCGTTGA
Found at i:8558506 original size:86 final size:85
Alignment explanation
Indices: 8558360--8558624 Score: 397
Period size: 86 Copynumber: 3.1 Consensus size: 85
8558350 AAGTTGTGAT
* *
8558360 GCCTCTGTTTAGAGGAACTTTGTTTATT-TTTCAAAGTCGTTGAGCCTCTGTTTAAGGAGCTTTG
1 GCCTCTGTCTAGAGGAACTTTGTTTATTGTTT--AAGTCGTTGAGCCTCTGTTTAAAGAGCTTTG
*
8558424 TTTATTTTTTAAAAGTCATTGA
64 TTTATTTTTCAAAAGTCATTGA
* *
8558446 GCCTCTGTCTAAAGGAGCTTTGTTTATTGTTTAAGTCGTTGAGCCTCTGTTTAAATGAGCTTTGT
1 GCCTCTGTCTAGAGGAACTTTGTTTATTGTTTAAGTCGTTGAGCCTCTGTTTAAA-GAGCTTTGT
*
8558511 TTATTTTTCAAAAGTTATTGA
65 TTATTTTTCAAAAGTCATTGA
* * *
8558532 GCCTCTGTGTAGAGGAACTTTGTTTATTGGTTAAGTCGTTGAGCCTCTGTTTAGAAGAGCTTGGT
1 GCCTCTGTCTAGAGGAACTTTGTTTATTGTTTAAGTCGTTGAGCCTCTGTTTA-AAGAGCTTTGT
*
8558597 TTATTTTTCAAAAGTCGTTGA
65 TTATTTTTCAAAAGTCATTGA
8558618 GCCTCTG
1 GCCTCTG
8558625 ATTAGGGGAA
Statistics
Matches: 163, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
85 22 0.13
86 136 0.83
87 5 0.03
ACGTcount: A:0.21, C:0.14, G:0.22, T:0.43
Consensus pattern (85 bp):
GCCTCTGTCTAGAGGAACTTTGTTTATTGTTTAAGTCGTTGAGCCTCTGTTTAAAGAGCTTTGTT
TATTTTTCAAAAGTCATTGA
Found at i:8558706 original size:172 final size:170
Alignment explanation
Indices: 8558360--8558707 Score: 416
Period size: 172 Copynumber: 2.0 Consensus size: 170
8558350 AAGTTGTGAT
* * * *
8558360 GCCTCTGTTTAGAGGAACTTTGTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTAAGGAGCTTTGT
1 GCCTCTGTGTAGAGGAACTTTGTTTATTGTT-AAAGTCGTTGAGCCTCTGTTTAAAGAGCTTGGT
* ** * * *
8558425 TTATTTTTTAAAAGTCATTGAGCCTCTGTCTAAAGGAGCTTTGTTTATTGTTTAAGTCGTTGAGC
65 TTATTTTTCAAAAGTCATTGAGCCTCTGTCTAAAGGAGC-TCATTTATTGTTCAAGTCATAGAGC
* * * *
8558490 CTCTGTTTAAATGAGCTTTGTTTATTTTTCAAAAGTTATTGA
129 CTCTGTTTAAAGGAACCTTGTTTATTTTTCAAAAGCTATTGA
8558532 GCCTCTGTGTAGAGGAACTTTGTTTATTGGTT-AAGTCGTTGAGCCTCTGTTTAGAAGAGCTTGG
1 GCCTCTGTGTAGAGGAACTTTGTTTATT-GTTAAAGTCGTTGAGCCTCTGTTTA-AAGAGCTTGG
* **
8558596 TTTATTTTTCAAAAGTCGTTGAGCCTCTGAT-TAGGGGAAGC-CATTTATT-TTCAAGATCATAG
64 TTTATTTTTCAAAAGTCATTGAGCCTCTG-TCTAAAGG-AGCTCATTTATTGTTCAAG-TCATAG
* * *
8558658 AGCCTCTGTTTAGAGGAACCTTGTTTACTTTTTTAAAAGCTGTTGA
126 AGCCTCTGTTTAAAGGAACCTTGTTTA-TTTTTCAAAAGCTATTGA
8558704 GCCT
1 GCCT
8558708 TTACTCAGAG
Statistics
Matches: 150, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
170 5 0.03
171 54 0.36
172 85 0.57
173 6 0.04
ACGTcount: A:0.22, C:0.14, G:0.22, T:0.42
Consensus pattern (170 bp):
GCCTCTGTGTAGAGGAACTTTGTTTATTGTTAAAGTCGTTGAGCCTCTGTTTAAAGAGCTTGGTT
TATTTTTCAAAAGTCATTGAGCCTCTGTCTAAAGGAGCTCATTTATTGTTCAAGTCATAGAGCCT
CTGTTTAAAGGAACCTTGTTTATTTTTCAAAAGCTATTGA
Found at i:8558923 original size:4 final size:4
Alignment explanation
Indices: 8558901--8559008 Score: 50
Period size: 4 Copynumber: 27.5 Consensus size: 4
8558891 ATTTTGTATT
* *
8558901 TTTA TTT- TGTA TCTTA TTTA TTTA -TTA TTTA TTTA TTTG TTTA TTGCTA
1 TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT--TA
* * * * *
8558950 -TTA -TTA -TTA TTTA TTAA TATA TATT- TTTA TCTA TTAA TATA TATTA
1 TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA T-TTA
*
8558996 -TTA TTTA TCTA TT
1 TTTA TTTA TTTA TT
8559009 AATGTATATA
Statistics
Matches: 78, Mismatches: 16, Indels: 20
0.68 0.14 0.18
Matches are distributed among these distances:
3 18 0.23
4 51 0.65
5 7 0.09
6 2 0.03
ACGTcount: A:0.28, C:0.04, G:0.03, T:0.66
Consensus pattern (4 bp):
TTTA
Found at i:8558974 original size:20 final size:20
Alignment explanation
Indices: 8558951--8559003 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
8558941 TTATTGCTAT
8558951 TATTATTATTTATTAATATA
1 TATTATTATTTATTAATATA
* *
8558971 TATTTTTATCTATTAATATA
1 TATTATTATTTATTAATATA
8558991 TATTATTATTTAT
1 TATTATTATTTAT
8559004 CTATTAATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (20 bp):
TATTATTATTTATTAATATA
Found at i:8559027 original size:28 final size:24
Alignment explanation
Indices: 8558948--8559084 Score: 137
Period size: 24 Copynumber: 5.8 Consensus size: 24
8558938 TGTTTATTGC
*
8558948 TATTATTA-TTATTTATT-A-ATA
1 TATTATTATTTATCTATTAATATA
8558969 TA-TATT-TTTATCTATTAATATA
1 TATTATTATTTATCTATTAATATA
*
8558991 TATTATTATTTATCTATTAATGTA
1 TATTATTATTTATCTATTAATATA
*
8559015 TATAAATT-TTTAT-TATTAACTAT-
1 TAT-TATTATTTATCTATTAA-TATA
8559038 TATCTATTATTTATCTATTAGTATATA
1 TAT-TATTATTTATCTATTA--ATATA
8559065 TATTTATTATTTATCTATTA
1 TA-TTATTATTTATCTATTA
8559085 TTTTTTTGGT
Statistics
Matches: 97, Mismatches: 6, Indels: 20
0.79 0.05 0.16
Matches are distributed among these distances:
20 12 0.12
21 3 0.03
22 5 0.05
23 16 0.16
24 30 0.31
25 8 0.08
26 3 0.03
27 19 0.20
28 1 0.01
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.59
Consensus pattern (24 bp):
TATTATTATTTATCTATTAATATA
Found at i:8559027 original size:48 final size:45
Alignment explanation
Indices: 8558948--8559086 Score: 155
Period size: 48 Copynumber: 3.1 Consensus size: 45
8558938 TGTTTATTGC
*
8558948 TATTATTA-TTATTTATTAA-TATAT-ATTTTTATCTATTAA-TAT
1 TATTATTATTTATCTATTAAGTATATAATTTTTAT-TATTAACTAT
8558990 ATATTATTATTTATCTATTAATGTATATAAATTTTTATTATTAACTAT
1 -TATTATTATTTATCTATTAA-GTATAT-AATTTTTATTATTAACTAT
* *
8559038 TATCTATTATTTATCTATT-AGTATAT-ATATTTATTATTTATCTAT
1 TAT-TATTATTTATCTATTAAGTATATAATTTTTATTA-TTAACTAT
8559083 TATT
1 TATT
8559087 TTTTTGGTTG
Statistics
Matches: 85, Mismatches: 3, Indels: 15
0.83 0.03 0.15
Matches are distributed among these distances:
43 8 0.09
44 20 0.24
45 10 0.12
46 11 0.13
47 10 0.12
48 26 0.31
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (45 bp):
TATTATTATTTATCTATTAAGTATATAATTTTTATTATTAACTAT
Found at i:8559029 original size:44 final size:47
Alignment explanation
Indices: 8558948--8559075 Score: 144
Period size: 46 Copynumber: 2.8 Consensus size: 47
8558938 TGTTTATTGC
* *
8558948 TATTATTA-TTATTTATTAA-TATATATTTTTATCTATTAAT-A-TA-
1 TATTATTATTTATCTATTAAGTATATATATTTAT-TATTAATAACTAT
* *
8558991 TATTATTATTTATCTATTAATGTATATAAATTT-TTATTATTAACTAT
1 TATTATTATTTATCTATTAA-GTATATATATTTATTATTAATAACTAT
8559038 TATCTATTATTTATCTATT-AGTATATATATTTATTATT
1 TAT-TATTATTTATCTATTAAGTATATATATTTATTATT
8559076 TATCTATTAT
Statistics
Matches: 72, Mismatches: 5, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
43 8 0.11
44 16 0.22
45 2 0.03
46 22 0.31
47 9 0.12
48 15 0.21
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (47 bp):
TATTATTATTTATCTATTAAGTATATATATTTATTATTAATAACTAT
Found at i:8563665 original size:15 final size:15
Alignment explanation
Indices: 8563645--8563673 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8563635 TTTGCACTTG
8563645 GCAAAAAGCATATGT
1 GCAAAAAGCATATGT
8563660 GCAAAAAGCATATG
1 GCAAAAAGCATATG
8563674 ATTTTTTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.14, G:0.21, T:0.17
Consensus pattern (15 bp):
GCAAAAAGCATATGT
Found at i:8567539 original size:2 final size:2
Alignment explanation
Indices: 8567532--8567573 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
8567522 CAATGGAAAA
8567532 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8567574 CCAGGGCTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:8569696 original size:31 final size:31
Alignment explanation
Indices: 8569658--8569720 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
8569648 AAAACATTAG
* *
8569658 AAAAGGTTTAAAATTAAAGATATAACAGGTA
1 AAAAGGTTTAAAATTAAAGACATAACAAGTA
8569689 AAAAGGTTTAAAATTAAAGACATAACAAGTA
1 AAAAGGTTTAAAATTAAAGACATAACAAGTA
8569720 A
1 A
8569721 TATTGTATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.57, C:0.05, G:0.14, T:0.24
Consensus pattern (31 bp):
AAAAGGTTTAAAATTAAAGACATAACAAGTA
Found at i:8570014 original size:22 final size:21
Alignment explanation
Indices: 8569973--8570015 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
8569963 GGGCTATAAA
*
8569973 GCAAAAAATTTAGGAGAAAGG
1 GCAAAAAATTTAAGAGAAAGG
8569994 GCAAAGAAATTGTAAGA-AAAGG
1 GCAAA-AAATT-TAAGAGAAAGG
8570016 TCTATCCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 5 0.26
22 10 0.53
23 4 0.21
ACGTcount: A:0.53, C:0.05, G:0.28, T:0.14
Consensus pattern (21 bp):
GCAAAAAATTTAAGAGAAAGG
Found at i:8572371 original size:25 final size:25
Alignment explanation
Indices: 8572343--8572398 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
8572333 ATTTATTATT
*
8572343 ATTTTTTTCAATCGCAATTATAATA
1 ATTTTTTTCAATCACAATTATAATA
* *
8572368 ATTTTTTTCAATTACAGTTATAATA
1 ATTTTTTTCAATCACAATTATAATA
8572393 ATTTTT
1 ATTTTT
8572399 ATTATAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.34, C:0.09, G:0.04, T:0.54
Consensus pattern (25 bp):
ATTTTTTTCAATCACAATTATAATA
Found at i:8572907 original size:2 final size:2
Alignment explanation
Indices: 8572900--8572947 Score: 71
Period size: 2 Copynumber: 24.5 Consensus size: 2
8572890 CCAAGAACTG
* *
8572900 AT AT AT AT AT AT AT AT AT -T AT AT AT TT AT AT AT AT AT AT AG
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8572941 AT AT AT A
1 AT AT AT A
8572948 GTGAATGTGA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8574269 original size:3 final size:3
Alignment explanation
Indices: 8574261--8574293 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
8574251 CTTTTGTAAA
8574261 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8574294 TTTAAGAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8576004 original size:12 final size:12
Alignment explanation
Indices: 8575982--8576017 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
8575972 AATGATGGTA
8575982 TAAAAAGAAAAAG
1 TAAAAA-AAAAAG
*
8575995 TAAAAAAAAAAT
1 TAAAAAAAAAAG
8576007 TAAAAAAAAAA
1 TAAAAAAAAAA
8576018 AAAGAAAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 16 0.73
13 6 0.27
ACGTcount: A:0.83, C:0.00, G:0.06, T:0.11
Consensus pattern (12 bp):
TAAAAAAAAAAG
Found at i:8576284 original size:2 final size:2
Alignment explanation
Indices: 8576277--8576309 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8576267 ACCCACCATT
8576277 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
8576310 TTGCCTTTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:8581905 original size:17 final size:16
Alignment explanation
Indices: 8581861--8581916 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
8581851 CATTTTCCTA
*
8581861 TATTTTT-TATTAGTT
1 TATTTTTATATTAATT
* *
8581876 TAGTATTATTATTAAATT
1 TATTTTTA-TATT-AATT
*
8581894 TATTTTTATATTATTT
1 TATTTTTATATTAATT
8581910 TATTTTT
1 TATTTTT
8581917 TAAAGTTTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
15 5 0.16
16 10 0.31
17 8 0.25
18 9 0.28
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.70
Consensus pattern (16 bp):
TATTTTTATATTAATT
Found at i:8583008 original size:21 final size:20
Alignment explanation
Indices: 8582984--8583043 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 20
8582974 TTGTATTTGG
* *
8582984 TATTATTTTTGGTATATTTTT
1 TATTATATTTCGTAT-TTTTT
*
8583005 TATTGTATTTCGTATTTTTT
1 TATTATATTTCGTATTTTTT
*
8583025 TATTTATACTTCGTATTTT
1 TA-TTATATTTCGTATTTT
8583044 ATATTTCTGG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
20 7 0.21
21 26 0.79
ACGTcount: A:0.18, C:0.05, G:0.08, T:0.68
Consensus pattern (20 bp):
TATTATATTTCGTATTTTTT
Found at i:8583346 original size:48 final size:49
Alignment explanation
Indices: 8583214--8583551 Score: 318
Period size: 48 Copynumber: 7.0 Consensus size: 49
8583204 AAAAATCTGA
* * * * *
8583214 AAAAGACTCATCTTAGTAGAGGTTCAAACAACTTTAAAAATCTCATCTTAAA
1 AAAAGGCTCATCTCAGCAGAGGCTC-AACAACTTTAAAAATCTCATCTT--G
**
8583266 AAAAGTTTC-TCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATC-TG
1 AAAAGGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTG
**
8583313 AAAAGGCTCATCTCAATAGAGGCTCAACAACTTT-AAAATC-CATCTTG
1 AAAAGGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTG
* ** *
8583360 AAAAGGGTTCATCTCAATAGAGGCTCAACGACTTTAAAAAT-T-ATCTTTG
1 AAAA-GGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATC-TTG
* * **
8583409 AAATGGCTCATCTCAGCAAAGGCTCAAGTACTTTAAAAATCTCATC-TG
1 AAAAGGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTG
** * * *
8583457 AAAAAACTCTTCTCAACAGAGGCTCAACAACTTT-AAAATC-CATCTTA
1 AAAAGGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTG
* * * *
8583504 AAAAGGGCTCCTCTCAGCAGAGGCTCAATAA-TTTTAAAATCTCGTCTT
1 AAAA-GGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTT
8583552 TTCTCAAAAC
Statistics
Matches: 240, Mismatches: 34, Indels: 27
0.80 0.11 0.09
Matches are distributed among these distances:
46 8 0.03
47 33 0.14
48 138 0.57
49 18 0.08
50 24 0.10
51 12 0.05
52 7 0.03
ACGTcount: A:0.38, C:0.22, G:0.13, T:0.28
Consensus pattern (49 bp):
AAAAGGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTG
Found at i:8583540 original size:144 final size:144
Alignment explanation
Indices: 8583275--8583542 Score: 401
Period size: 144 Copynumber: 1.9 Consensus size: 144
8583265 AAAAAGTTTC
* ** *
8583275 TCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTGAAAAGGCTCATCTCAATAGAGGCTCAA
1 TCTCAGCAAAGGCTCAACAACTTTAAAAATCTCATCTGAAAAAACTCATCTCAACAGAGGCTCAA
* * * *
8583340 CAACTTTAAAATCCATCTTGAAAAGGGTTCATCTCAATAGAGGCTCAACGACTTTAAAAATTATC
66 CAACTTTAAAATCCATCTTAAAAAGGGCTCATCTCAACAGAGGCTCAACAACTTTAAAAATTATC
8583405 TTTGAAATGGCTCA
131 TTTGAAATGGCTCA
** *
8583419 TCTCAGCAAAGGCTCAAGTACTTTAAAAATCTCATCTGAAAAAACTCTTCTCAACAGAGGCTCAA
1 TCTCAGCAAAGGCTCAACAACTTTAAAAATCTCATCTGAAAAAACTCATCTCAACAGAGGCTCAA
* * * *
8583484 CAACTTTAAAATCCATCTTAAAAAGGGCTCCTCTCAGCAGAGGCTCAATAATTTTAAAA
66 CAACTTTAAAATCCATCTTAAAAAGGGCTCATCTCAACAGAGGCTCAACAACTTTAAAA
8583543 TCTCGTCTTT
Statistics
Matches: 109, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
144 109 1.00
ACGTcount: A:0.38, C:0.22, G:0.13, T:0.26
Consensus pattern (144 bp):
TCTCAGCAAAGGCTCAACAACTTTAAAAATCTCATCTGAAAAAACTCATCTCAACAGAGGCTCAA
CAACTTTAAAATCCATCTTAAAAAGGGCTCATCTCAACAGAGGCTCAACAACTTTAAAAATTATC
TTTGAAATGGCTCA
Found at i:8584306 original size:9 final size:9
Alignment explanation
Indices: 8584274--8584307 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
8584264 TGAGTCATTA
*
8584274 TTTTTTCAT
1 TTTTTTCTT
*
8584283 TTTTTACTT
1 TTTTTTCTT
8584292 TTTTTTCTT
1 TTTTTTCTT
8584301 TTTTTTC
1 TTTTTTC
8584308 AAGCAAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.82
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:8597269 original size:32 final size:32
Alignment explanation
Indices: 8597228--8597312 Score: 86
Period size: 32 Copynumber: 2.7 Consensus size: 32
8597218 AAATGATTTG
*
8597228 AAAAA-TTTTACTTAATATTTT-AA-CAAGAT
1 AAAAATTTTTACTTAATTTTTTAAACCAAGAT
** *
8597257 ACAAAATTTTTTAGGTAATTTTTTAAACCAATAT
1 A-AAAA-TTTTTACTTAATTTTTTAAACCAAGAT
*
8597291 AAAAATGTTTACTTAATTTTTT
1 AAAAATTTTTACTTAATTTTTT
8597313 TAAATGATAT
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
29 1 0.02
30 4 0.09
32 27 0.61
33 6 0.14
34 6 0.14
ACGTcount: A:0.42, C:0.07, G:0.05, T:0.46
Consensus pattern (32 bp):
AAAAATTTTTACTTAATTTTTTAAACCAAGAT
Found at i:8597765 original size:2 final size:2
Alignment explanation
Indices: 8597758--8597790 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
8597748 TACCCTCATG
*
8597758 TA TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8597791 TCGTTAGATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:8597920 original size:23 final size:22
Alignment explanation
Indices: 8597872--8597920 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 22
8597862 ATTTAAATGA
* * *
8597872 AAATTTTCAAGTGAAATTCGTG
1 AAATTTTCAAGTAAAAATCATG
*
8597894 AAATTTTCTAAGTAAAAATCATT
1 AAATTTTC-AAGTAAAAATCATG
8597917 AAAT
1 AAAT
8597921 GAAATTTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (22 bp):
AAATTTTCAAGTAAAAATCATG
Found at i:8601043 original size:144 final size:142
Alignment explanation
Indices: 8600651--8601056 Score: 413
Period size: 144 Copynumber: 2.8 Consensus size: 142
8600641 AAAATGTATG
* * *** *
8600651 AAATTACCAAAATATCATTTATGTGTATTTTCGTAATTTGACTTTTCTAAGGTTAGA-TTTTCAT
1 AAATTATCAAAATATCCTTTAAAAGTATTTTCGTAATTTGACTTTTCGAA-GTTA-ATTTTTCAT
* **
8600715 GAAAAAC-TTCACATCATATTTTCATATTATTTCATAATTTATGGTACATTAAAAACCCTTATCA
64 G-AAAACTTTCACATCATATTTTCATATTATTTCATAATTTTTTATACATTAAAAACCCTTATCA
* *
8600779 CACCTAAGAATTTGTA
128 CACCT-AGAATGTGCA
* * * * * *
8600795 AAATTATTAAAATATCCTTTAAAAATATTTTCATAATTTGATTTTTTCGAAGTTAGTTTTTTATG
1 AAATTATCAAAATATCCTTTAAAAGTATTTTCGTAATTTGA-CTTTTCGAAGTTAATTTTTCATG
* * * * ** *
8600860 AAAACTTTTATATCATATTTTTATATTATTTCATAATTTTTTATGCATTAAAAACTTTTATCGCA
65 AAAACTTTCACATCATATTTTCATATTATTTCATAATTTTTTATACATTAAAAACCCTTATCACA
8600925 CTCT-GAATGTGCA
130 C-CTAGAATGTGCA
* * * * *
8600938 AAATTATCAAAATGTCTTTTTAAGAGTATTTTCGTAATTTGACTTTCTCGAAATCAATTTTTCAT
1 AAATTATCAAAATATC-CTTTAAAAGTATTTTCGTAATTTGACTTT-TCGAAGTTAATTTTTCAT
* * * * *
8601003 GAAAACTTTCAGATCATATTTTCATATTATTTTATGATTTTTTGTATATTAAAA
64 GAAAACTTTCACATCATATTTTCATATTATTTCATAATTTTTTATACATTAAAA
8601057 TCACAAAAAC
Statistics
Matches: 213, Mismatches: 43, Indels: 12
0.79 0.16 0.04
Matches are distributed among these distances:
143 29 0.14
144 175 0.82
145 9 0.04
ACGTcount: A:0.34, C:0.12, G:0.08, T:0.46
Consensus pattern (142 bp):
AAATTATCAAAATATCCTTTAAAAGTATTTTCGTAATTTGACTTTTCGAAGTTAATTTTTCATGA
AAACTTTCACATCATATTTTCATATTATTTCATAATTTTTTATACATTAAAAACCCTTATCACAC
CTAGAATGTGCA
Found at i:8617708 original size:13 final size:14
Alignment explanation
Indices: 8617670--8617708 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
8617660 ATTTTCAATG
8617670 ATAATATTTTT-TA
1 ATAATATTTTTATA
*
8617683 ATAATATTATTAT-
1 ATAATATTTTTATA
8617696 ATAATATTTTTAT
1 ATAATATTTTTAT
8617709 GGATTAAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 22 0.96
14 1 0.04
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
ATAATATTTTTATA
Found at i:8619670 original size:24 final size:24
Alignment explanation
Indices: 8619605--8619698 Score: 88
Period size: 24 Copynumber: 3.9 Consensus size: 24
8619595 AAATAAATAT
*
8619605 ATATATACTAATAGATAAATAA-TA
1 ATATATATTAATAGATAAA-AATTA
*
8619629 GATA-ATAATTAATA-ATAAAAATTT
1 -ATATAT-ATTAATAGATAAAAATTA
* *
8619653 ATGTATGTTAATAGATAAATAA-TA
1 ATATATATTAATAGATAAA-AATTA
8619677 ATATATATTAATAGATAAAAAT
1 ATATATATTAATAGATAAAAAT
8619699 ATATATTAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 13
0.74 0.09 0.17
Matches are distributed among these distances:
23 12 0.21
24 33 0.59
25 11 0.20
ACGTcount: A:0.56, C:0.01, G:0.06, T:0.36
Consensus pattern (24 bp):
ATATATATTAATAGATAAAAATTA
Found at i:8619720 original size:10 final size:10
Alignment explanation
Indices: 8619586--8619733 Score: 63
Period size: 10 Copynumber: 14.8 Consensus size: 10
8619576 AAAAAAAAAG
8619586 ATAAATAATAA
1 ATAAATAAT-A
8619597 ATAAAT-AT-
1 ATAAATAATA
* *
8619605 ATATATACTA
1 ATAAATAATA
*
8619615 ATAGATAAATA
1 ATAAAT-AATA
*
8619626 ATAGATAATA
1 ATAAATAATA
*
8619636 ATTAATAATA
1 ATAAATAATA
*
8619646 A-AAAT-TTA
1 ATAAATAATA
* **
8619654 TGTATGTTAATA
1 -ATA-AATAATA
8619666 GATAAATAATA
1 -ATAAATAATA
* *
8619677 ATATATATTA
1 ATAAATAATA
* *
8619687 ATAGATAAAA
1 ATAAATAATA
* *
8619697 ATATATATTA
1 ATAAATAATA
8619707 ATAAATAATA
1 ATAAATAATA
**
8619717 AT-AATAGCA
1 ATAAATAATA
8619726 ATAAATAA
1 ATAAATAA
8619734 ATAAGATACA
Statistics
Matches: 100, Mismatches: 29, Indels: 17
0.68 0.20 0.12
Matches are distributed among these distances:
8 7 0.07
9 11 0.11
10 57 0.57
11 21 0.21
12 4 0.04
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.34
Consensus pattern (10 bp):
ATAAATAATA
Found at i:8619737 original size:20 final size:20
Alignment explanation
Indices: 8619667--8619733 Score: 91
Period size: 20 Copynumber: 3.4 Consensus size: 20
8619657 ATGTTAATAG
8619667 ATAAATAATAATATATATTA
1 ATAAATAATAATATATATTA
* *
8619687 ATAGATAAAAATATATATTA
1 ATAAATAATAATATATATTA
**
8619707 ATAAATAATAATA-ATAGCA
1 ATAAATAATAATATATATTA
8619726 ATAAATAA
1 ATAAATAA
8619734 ATAAGATACA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
19 12 0.29
20 29 0.71
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (20 bp):
ATAAATAATAATATATATTA
Found at i:8620429 original size:256 final size:261
Alignment explanation
Indices: 8619933--8620465 Score: 692
Period size: 256 Copynumber: 2.1 Consensus size: 261
8619923 AAATTTTCAT
* ** * *
8619933 CAAAGTTCCTCTAAGTAGAAGCTCAACGACTTTGAAAAACATAAACAAAGCTCCTCTAAGTAGAG
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAACATAAACAAAGCTCCTCTAAGCAGAG
* *
8619998 ACTCAACGACTTTTAAAAAAAATAATAAAGCTCCTCTAAACAGAGGCTCCACGACCTTGAAAATA
66 ACTCAACGACTTTTAAAAAAAATAACAAAGCTCCTCTAAACAGAGGCTCAACGACCTTGAAAATA
* * * *
8620063 AATGGCTCCTTTAATCAGAGGCTTCAACGACTTTGAAAAATAAATCAAGGTCATTTAATCAGAGG
131 AATGGCTCCTTTAATAAGAGGCTTCAACGACTTTAAAAAATAAATCAAGCTCATTTAAACAGAGG
* *
8620128 CTCAATGACTTCTGAAAAATAAACCAAGCTCCTCTAAATAGAGGCTCAACAAC-TT-AAACAATA
196 CTCAATGACTTCTGAAAAATAAACAAAGCTCCTCTAAACAGAGGCTCAACAACTTTGAAA-AATA
8620191 AA
260 AA
* *
8620193 CAAAGCTCTTCTAAACAGAGGCTCAACGAC-TT-AAACA-ATAAACAAAGCTCCTCT-AGACAGA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAACATAAACAAAGCTCCTCTAAG-CAGA
* * * * * *
8620254 GGCTCAATGACTTTTGAAAAATA-AACAAAGCTCTTCTAAACAGAGGCTCAACGACTTTGAAAAA
65 GACTCAACGACTTTTAAAAAAAATAACAAAGCTCCTCTAAACAGAGGCTCAACGACCTTG-AAAA
*
8620318 TAAATGGCTCTTTTAATAAGAGGC-TCAACGAC-TTAAACAAATAAA-CAAAGCTC-TTCTAAAC
129 TAAATGGCTCCTTTAATAAGAGGCTTCAACGACTTTAAA-AAATAAATC-AAGCTCATT-TAAAC
* * * *
8620379 AGAGGCTCGATGACTTTTGAAAAATAAACAAAGCTCCTCTAGACAGAGGCTCAACGACTTTTGAA
191 AGAGGCTCAATGACTTCTGAAAAATAAACAAAGCTCCTCTAAACAGAGGCTCAACAAC-TTTGAA
8620444 AAATAAA
255 AAATAAA
8620451 CAAAGCTCCTCTAAA
1 CAAAGCTCCTCTAAA
8620466 TAAAGACATC
Statistics
Matches: 238, Mismatches: 27, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
255 7 0.03
256 110 0.46
257 65 0.27
258 26 0.11
259 5 0.02
260 25 0.11
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.23
Consensus pattern (261 bp):
CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAACATAAACAAAGCTCCTCTAAGCAGAG
ACTCAACGACTTTTAAAAAAAATAACAAAGCTCCTCTAAACAGAGGCTCAACGACCTTGAAAATA
AATGGCTCCTTTAATAAGAGGCTTCAACGACTTTAAAAAATAAATCAAGCTCATTTAAACAGAGG
CTCAATGACTTCTGAAAAATAAACAAAGCTCCTCTAAACAGAGGCTCAACAACTTTGAAAAATAA
A
Found at i:8620439 original size:128 final size:128
Alignment explanation
Indices: 8619953--8620450 Score: 587
Period size: 128 Copynumber: 3.9 Consensus size: 128
8619943 CTAAGTAGAA
** * * *
8619953 GCTCAACGACTTTGAAAAACATAAACAAAGCTCCTCTAAGTAGAGACTCAACGACTTTTAAAAAA
1 GCTCAACGACTTT-AAAAA-ATAAACAAAGCTCCTCTAAACAGAGGCTCAATGACTTTTGAAAAA
* * * * * *
8620018 AATAATAAAGCTCCTCTAAACAGAGGCTCCACGACCTTG-AAAATAAATGGCTCCTTTAATCAGA
64 TA-AACAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAATAAATGGCTCTTTTAATAAGA
8620082 G
128 G
* * * * * *
8620083 GCTTCAACGACTTTGAAAAATAAATC-AAGGTCATTTAATCAGAGGCTCAATGACTTCTGAAAAA
1 GC-TCAACGACTTTAAAAAATAAA-CAAAGCTCCTCTAAACAGAGGCTCAATGACTTTTGAAAAA
* * * ** *
8620147 TAAACCAAGCTCCTCTAAATAGAGGCTCAACAAC-TT-AAACAATAAACAAAGCTCTTCTAA-AC
64 TAAACAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAA-AAT-AA-ATGGCTCTTTTAATA-
8620209 AGAG
125 AGAG
* *
8620213 GCTCAACGAC-TTAAACAATAAACAAAGCTCCTCTAGACAGAGGCTCAATGACTTTTGAAAAATA
1 GCTCAACGACTTTAAAAAATAAACAAAGCTCCTCTAAACAGAGGCTCAATGACTTTTGAAAAATA
*
8620277 AACAAAGCTCTTCTAAACAGAGGCTCAACGACTTTGAAAAATAAATGGCTCTTTTAATAAGAG
66 AACAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAATAAATGGCTCTTTTAATAAGAG
* *
8620340 GCTCAACGAC-TTAAACAAATAAACAAAGCTCTTCTAAACAGAGGCTCGATGACTTTTGAAAAAT
1 GCTCAACGACTTTAAA-AAATAAACAAAGCTCCTCTAAACAGAGGCTCAATGACTTTTGAAAAAT
*
8620404 AAACAAAGCTCCTCTAGACAGAGGCTCAACGACTTTTGAAAAATAAA
65 AAACAAAGCTCCTCTAAACAGAGGCTCAACGAC-TTTGAAAAATAAA
8620451 CAAAGCTCCT
Statistics
Matches: 313, Mismatches: 42, Indels: 27
0.82 0.11 0.07
Matches are distributed among these distances:
127 34 0.11
128 180 0.58
129 63 0.20
130 25 0.08
131 11 0.04
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.23
Consensus pattern (128 bp):
GCTCAACGACTTTAAAAAATAAACAAAGCTCCTCTAAACAGAGGCTCAATGACTTTTGAAAAATA
AACAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAATAAATGGCTCTTTTAATAAGAG
Found at i:8620483 original size:44 final size:43
Alignment explanation
Indices: 8619933--8620465 Score: 523
Period size: 44 Copynumber: 12.3 Consensus size: 43
8619923 AAATTTTCAT
* ** *
8619933 CAAAGTTCCTCTAAGTAGAAGCTCAACGACTTTGAAAAACATAAA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTG-AAAA-ATAAA
** * * *
8619978 CAAAGCTCCTCTAAGTAGAGACTCAACGACTTTTAAAAAAAATAA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGAC-TTTGAAAAATA-AA
* * *
8620023 TAAAGCTCCTCTAAACAGAGGCTCCACGACCTTG-AAAAT-AA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAATAAA
** * *
8620064 -ATGGCTCCTTTAATCAGAGGCTTCAACGACTTTGAAAAATAAA
1 CAAAGCTCCTCTAAACAGAGGC-TCAACGACTTTGAAAAATAAA
* * * * *
8620107 TC-AAGGTCATTTAATCAGAGGCTCAATGACTTCTGAAAAATAAA
1 -CAAAGCTCCTCTAAACAGAGGCTCAACGACTT-TGAAAAATAAA
* * *
8620151 CCAAGCTCCTCTAAATAGAGGCTCAACAAC-TT-AAACAATAAA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAA-AATAAA
*
8620193 CAAAGCTCTTCTAAACAGAGGCTCAACGAC-TT-AAACAATAAA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAA-AATAAA
* *
8620235 CAAAGCTCCTCTAGACAGAGGCTCAATGACTTTTGAAAAATAAA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGAC-TTTGAAAAATAAA
*
8620279 CAAAGCTCTTCTAAACAGAGGCTCAACGACTTTGAAAAAT-AA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAATAAA
** * * *
8620321 -ATGGCTCTTTTAATA-AGAGGCTCAACGAC-TTAAACAAATAAA
1 CAAAGCTCCTCTAA-ACAGAGGCTCAACGACTTTGAA-AAATAAA
* * *
8620363 CAAAGCTCTTCTAAACAGAGGCTCGATGACTTTTGAAAAATAAA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGAC-TTTGAAAAATAAA
*
8620407 CAAAGCTCCTCTAGACAGAGGCTCAACGACTTTTGAAAAATAAA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGAC-TTTGAAAAATAAA
8620451 CAAAGCTCCTCTAAA
1 CAAAGCTCCTCTAAA
8620466 TAAAGACATC
Statistics
Matches: 412, Mismatches: 56, Indels: 41
0.81 0.11 0.08
Matches are distributed among these distances:
40 21 0.05
41 43 0.10
42 83 0.20
43 49 0.12
44 148 0.36
45 65 0.16
46 3 0.01
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.23
Consensus pattern (43 bp):
CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAATAAA
Found at i:8620485 original size:172 final size:169
Alignment explanation
Indices: 8620024--8620487 Score: 505
Period size: 172 Copynumber: 2.7 Consensus size: 169
8620014 AAAAAATAAT
* * * ** *
8620024 AAAGCTCCTCTAAACAGAGGCTCCACGACCTTGAA-AAT-AA-ATGGCTCCTTTA-ATCAGAGGC
1 AAAGCTCTTCTAAACAGAGGCTCAACGA-CTTAAACAATAAACAAAGCTCCTCTAGA-CAGAGGC
* * * * * * **
8620085 TTCAACGAC-TTTGAAAAATAAATC-AAGGTCATTTAATCAGAGGCTCAATGACTTCTGAAAAAT
64 -TCAACGACTTTTGAAAAATAAA-CAAAGCTCCTCTAAACAAAGACTCAACAACTT-TGAAAAAT
** * *
8620148 AAACCAAGCTCCTCTAA-ATAGAGGCTCAACAACTTAAACAATAAAC
126 AAA--TGGCTCTTTTAATA-AGAGGCTCAACAACTTAAACAATAAAC
8620194 AAAGCTCTTCTAAACAGAGGCTCAACGACTTAAACAATAAACAAAGCTCCTCTAGACAGAGGCTC
1 AAAGCTCTTCTAAACAGAGGCTCAACGACTTAAACAATAAACAAAGCTCCTCTAGACAGAGGCTC
* * * * *
8620259 AATGACTTTTGAAAAATAAACAAAGCTCTTCTAAACAGAGGCTCAACGACTTTGAAAAATAAATG
66 AACGACTTTTGAAAAATAAACAAAGCTCCTCTAAACAAAGACTCAACAACTTTGAAAAATAAATG
*
8620324 GCTCTTTTAATAAGAGGCTCAACGACTTAAACAAATAAAC
131 GCTCTTTTAATAAGAGGCTCAACAACTTAAAC-AATAAAC
* *
8620364 AAAGCTCTTCTAAACAGAGGCTCGATGACTTTTGAAA-AATAAACAAAGCTCCTCTAGACAGAGG
1 AAAGCTCTTCTAAACAGAGGCTCAACGAC--TT-AAACAATAAACAAAGCTCCTCTAGACAGAGG
*
8620428 CTCAACGACTTTTGAAAAATAAACAAAGCTCCTCTAAATAAAGACATC-ACAACTTTGAAA
63 CTCAACGACTTTTGAAAAATAAACAAAGCTCCTCTAAACAAAGAC-TCAACAACTTTGAAA
8620488 GTAAATGATC
Statistics
Matches: 257, Mismatches: 25, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
169 32 0.12
170 64 0.25
171 21 0.08
172 134 0.52
173 6 0.02
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.23
Consensus pattern (169 bp):
AAAGCTCTTCTAAACAGAGGCTCAACGACTTAAACAATAAACAAAGCTCCTCTAGACAGAGGCTC
AACGACTTTTGAAAAATAAACAAAGCTCCTCTAAACAAAGACTCAACAACTTTGAAAAATAAATG
GCTCTTTTAATAAGAGGCTCAACAACTTAAACAATAAAC
Found at i:8621543 original size:9 final size:9
Alignment explanation
Indices: 8621508--8621543 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
8621498 TTTTTCATTC
*
8621508 CTTTTTTTC
1 CTTTTTTTT
8621517 CTTTTTTTT
1 CTTTTTTTT
8621526 CTTTTTTTT
1 CTTTTTTTT
8621535 CTTTTTTTT
1 CTTTTTTTT
8621544 TACCTTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (9 bp):
CTTTTTTTT
Found at i:8621555 original size:10 final size:9
Alignment explanation
Indices: 8621494--8621542 Score: 62
Period size: 9 Copynumber: 5.2 Consensus size: 9
8621484 ATCTTGAGTC
8621494 TTCCTTTTT
1 TTCCTTTTT
8621503 CATTCCTTTTT
1 --TTCCTTTTT
8621514 TTCCTTTTT
1 TTCCTTTTT
*
8621523 TTTCTTTTT
1 TTCCTTTTT
*
8621532 TTTCTTTTT
1 TTCCTTTTT
8621541 TT
1 TT
8621543 TTACCTTTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
9 28 0.76
11 9 0.24
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (9 bp):
TTCCTTTTT
Found at i:8632095 original size:13 final size:13
Alignment explanation
Indices: 8632079--8632103 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8632069 TTGGAATTTT
8632079 ATTTAAAAAAATC
1 ATTTAAAAAAATC
8632092 ATTTAAAAAAAT
1 ATTTAAAAAAAT
8632104 AATAAAATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
ATTTAAAAAAATC
Found at i:8632158 original size:3 final size:3
Alignment explanation
Indices: 8632150--8632187 Score: 51
Period size: 3 Copynumber: 12.7 Consensus size: 3
8632140 CTAATCAATA
*
8632150 AAT AAT AAT AAT AAT AA- AAGA AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AA
8632188 ATAAGAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
2 2 0.06
3 28 0.88
4 2 0.06
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:8632175 original size:21 final size:21
Alignment explanation
Indices: 8632149--8632188 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
8632139 TCTAATCAAT
8632149 AAATAATAATAATAATAAAAG
1 AAATAATAATAATAATAAAAG
8632170 AAATAATAATAATAATAAA
1 AAATAATAATAATAATAAA
8632189 TAAGAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (21 bp):
AAATAATAATAATAATAAAAG
Found at i:8632935 original size:3 final size:3
Alignment explanation
Indices: 8632927--8633101 Score: 86
Period size: 3 Copynumber: 53.3 Consensus size: 3
8632917 TCCCAGCCAA
8632927 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGAT AAAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT -AAT AAT
* * *
8632974 AAAT AA- ATAT ATAT ACT AAT AGAT AAAT AAT AGAT ATT AGTT AAT AAT
1 -AAT AAT A-AT A-AT AAT AAT A-AT -AAT AAT A-AT AAT A-AT AAT AAT
* * * *
8633022 AAA AAT -TT ATAT ACGTT AAT AAAT AAAT AAT AAT ATAT ATT AAT AGAT
1 AAT AAT AAT A-AT A--AT AAT -AAT -AAT AAT AAT A-AT AAT AAT A-AT
* *
8633070 AAA AAT -AT ATAT ATT AAT AAAT AAT AAT AAT A
1 AAT AAT AAT A-AT AAT AAT -AAT AAT AAT AAT A
8633102 GCAATAAATA
Statistics
Matches: 137, Mismatches: 17, Indels: 36
0.72 0.09 0.19
Matches are distributed among these distances:
2 4 0.03
3 86 0.63
4 43 0.31
5 4 0.03
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:8632978 original size:48 final size:47
Alignment explanation
Indices: 8632926--8633101 Score: 126
Period size: 48 Copynumber: 3.5 Consensus size: 47
8632916 ATCCCAGCCA
8632926 AAATAATAATAATAATAATAATAATAATAATAATAATAGATAAATAAT
1 AAAT-ATAATAATAATAATAATAATAATAATAATAATAGATAAATAAT
* * *
8632974 AAATA-AAT-ATATATACTAATAGATAAATAATAGATATTAG-TTAATAAT
1 AAATATAATAATA-ATAATAATA-AT-AATAATA-ATAATAGATAAATAAT
* * *
8633022 AAAAATTTATATACGTTAATAAATAAATAATAATATATATTAATAGATAAA-AAT
1 --AAATATA-ATA--ATAAT-AAT-AATAATAATA-ATAATAATAGATAAATAAT
* *
8633076 ATATATATTAATAAATAATAATAATA
1 AAATATAATAAT-AATAATAATAATA
8633102 GCAATAAATA
Statistics
Matches: 99, Mismatches: 13, Indels: 32
0.69 0.09 0.22
Matches are distributed among these distances:
45 3 0.03
46 11 0.11
47 3 0.03
48 25 0.25
49 10 0.10
50 7 0.07
51 3 0.03
52 7 0.07
54 14 0.14
55 12 0.12
56 4 0.04
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (47 bp):
AAATATAATAATAATAATAATAATAATAATAATAATAGATAAATAAT
Found at i:8632993 original size:20 final size:20
Alignment explanation
Indices: 8632970--8633115 Score: 64
Period size: 20 Copynumber: 6.7 Consensus size: 20
8632960 AATAGATAAA
8632970 TAATAAATAAATATATATAC
1 TAATAAATAAATATATATAC
* *
8632990 TAATAGATAAATAATAGATATTAGT
1 TAATAAATAAAT-AT--ATA-TA-C
* *
8633015 TAATAATAAAAATTTATATAC
1 TAATAA-ATAAATATATATAC
*
8633036 GTTAATAAATAAATAATAATATATAT
1 --TAATAAAT--A-AAT-ATATATAC
* *
8633062 TAATAGATAAAAATATATATAT
1 TAATA-A-ATAAATATATATAC
8633084 TAATAAAT-AATA-ATAATAGC
1 TAATAAATAAATATAT-ATA-C
8633104 -AATAAATAAATA
1 TAATAAATAAATA
8633116 AGATACAAAA
Statistics
Matches: 97, Mismatches: 12, Indels: 34
0.68 0.08 0.24
Matches are distributed among these distances:
18 2 0.02
19 14 0.14
20 16 0.16
21 3 0.03
22 16 0.16
23 15 0.15
24 9 0.09
25 10 0.10
26 12 0.12
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (20 bp):
TAATAAATAAATATATATAC
Found at i:8646671 original size:20 final size:23
Alignment explanation
Indices: 8646633--8646673 Score: 61
Period size: 20 Copynumber: 1.9 Consensus size: 23
8646623 ATTTATATCG
8646633 TATTATAATATTATATTTTAAAT
1 TATTATAATATTATATTTTAAAT
8646656 TATTA-AAT-TTAT-TTTTAA
1 TATTATAATATTATATTTTAA
8646674 CTCAATAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 4 0.22
22 3 0.17
23 5 0.28
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (23 bp):
TATTATAATATTATATTTTAAAT
Found at i:8647420 original size:48 final size:49
Alignment explanation
Indices: 8647364--8647460 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
8647354 TATATGTTGA
8647364 GTAACAATTTAATAGATTA-ATGTTAATATGAAATTACAAAGGCAAATC
1 GTAACAATTTAATAGATTATATGTTAATATGAAATTACAAAGGCAAATC
*
8647412 GTAACAATTTAATAGATTATATGTTAATATGAAATTACAAAGGTAAATC
1 GTAACAATTTAATAGATTATATGTTAATATGAAATTACAAAGGCAAATC
8647461 AAGTGCAACA
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
48 19 0.40
49 28 0.60
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.33
Consensus pattern (49 bp):
GTAACAATTTAATAGATTATATGTTAATATGAAATTACAAAGGCAAATC
Found at i:8649844 original size:23 final size:23
Alignment explanation
Indices: 8649814--8649861 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
8649804 AACCGAACGT
8649814 ACTCTGTGTTGGACATAAATGTA
1 ACTCTGTGTTGGACATAAATGTA
*
8649837 ACTCTGTGTTGGGCATAAATGTA
1 ACTCTGTGTTGGACATAAATGTA
8649860 AC
1 AC
8649862 ATCCTAAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (23 bp):
ACTCTGTGTTGGACATAAATGTA
Found at i:8650404 original size:18 final size:18
Alignment explanation
Indices: 8650361--8650409 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
8650351 CACTACTCTT
8650361 TTTTAATTTTTTTACCAAA
1 TTTTAATTTTTTTA-CAAA
*
8650380 -TTCAATTTTTGTTA-AAA
1 TTTTAATTTTT-TTACAAA
8650397 TTTTAATTTTTTT
1 TTTTAATTTTTTT
8650410 GTATTATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
17 5 0.19
18 18 0.69
19 3 0.12
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTTAATTTTTTTACAAA
Found at i:8654799 original size:21 final size:21
Alignment explanation
Indices: 8654773--8654817 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
8654763 AAAAACTCAA
*
8654773 TTTTTAATATATTTAATAATT
1 TTTTTAATATATATAATAATT
*
8654794 TTTTTAATTTATATAATAATT
1 TTTTTAATATATATAATAATT
8654815 TTT
1 TTT
8654818 AAAAGATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
TTTTTAATATATATAATAATT
Found at i:8666472 original size:18 final size:17
Alignment explanation
Indices: 8666429--8666473 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
8666419 TTTTTTATAT
8666429 ATTATTTTAATAAAAAA
1 ATTATTTTAATAAAAAA
*
8666446 ATTTAATTTATATAAAAATA
1 A-TTATTTTA-ATAAAAA-A
8666466 ATTATTTT
1 ATTATTTT
8666474 TATTTTACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 1 0.04
18 7 0.30
19 13 0.57
20 2 0.09
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTATTTTAATAAAAAA
Found at i:8668650 original size:21 final size:20
Alignment explanation
Indices: 8668603--8668651 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
8668593 TTTAGAAGAA
* *
8668603 TAATAAAATTGAATTAAGTT
1 TAATAATATTAAATTAAGTT
*
8668623 GATATAATATTAAATTCAAGTT
1 TA-ATAATATTAAATT-AAGTT
8668645 TAATAAT
1 TAATAAT
8668652 TTTTTTTTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.70
22 6 0.26
ACGTcount: A:0.49, C:0.02, G:0.08, T:0.41
Consensus pattern (20 bp):
TAATAATATTAAATTAAGTT
Found at i:8669402 original size:23 final size:24
Alignment explanation
Indices: 8669369--8669413 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
8669359 AAAATATTAA
8669369 AATTTATTAAATGAATTTAAATAT
1 AATTTATTAAATGAATTTAAATAT
**
8669393 AATTT-TTAAATTCATTTAAAT
1 AATTTATTAAATGAATTTAAAT
8669414 TTTTAGCCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (24 bp):
AATTTATTAAATGAATTTAAATAT
Found at i:8669404 original size:32 final size:33
Alignment explanation
Indices: 8669350--8669413 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 33
8669340 TTTTAAAAAA
* *
8669350 AATTTTAATAAAATATTAAAATTTA-TTAAATG
1 AATTTAAATAAAATATTAAAATTCATTTAAATG
* * *
8669382 AATTTAAATATAATTTTTAAATTCATTTAAAT
1 AATTTAAATAAAATATTAAAATTCATTTAAAT
8669414 TTTTAGCCAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
32 20 0.77
33 6 0.23
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (33 bp):
AATTTAAATAAAATATTAAAATTCATTTAAATG
Found at i:8669540 original size:13 final size:14
Alignment explanation
Indices: 8669509--8669543 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
8669499 ATATATGTAA
*
8669509 ATTTTATTTTTTAT
1 ATTTTATTTTTAAT
8669523 ATTTTATTTTTAAT
1 ATTTTATTTTTAAT
8669537 -TTTTATT
1 ATTTTATT
8669544 ACATAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 7 0.35
14 13 0.65
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (14 bp):
ATTTTATTTTTAAT
Found at i:8669766 original size:20 final size:20
Alignment explanation
Indices: 8669733--8669810 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
8669723 GATTGGTACG
* *
8669733 ATAACTTAACCAAGATTACA
1 ATAACCTAACCAAGGTTACA
*
8669753 ATAACCTAATCAAGGTTACA
1 ATAACCTAACCAAGGTTACA
* *
8669773 GTCACCTAACCAAGGTTACA
1 ATAACCTAACCAAGGTTACA
*
8669793 ATAACCTAACCAAAGTTA
1 ATAACCTAACCAAGGTTA
8669811 TACAACTATA
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.45, C:0.23, G:0.09, T:0.23
Consensus pattern (20 bp):
ATAACCTAACCAAGGTTACA
Found at i:8669955 original size:29 final size:30
Alignment explanation
Indices: 8669914--8669986 Score: 85
Period size: 32 Copynumber: 2.4 Consensus size: 30
8669904 CCAGCTTCTC
** *
8669914 TCTTCTTATTTCTCTCTTT-TACCTATCTT
1 TCTTCTTCCTTCTCTCTTTATACCTATCGT
8669943 TCTTCTTCCTTCTCTCTTTAAATACCTATCGT
1 TCTTCTTCCTTCTCTCTTT--ATACCTATCGT
*
8669975 TCTTCTCCCTTC
1 TCTTCTTCCTTC
8669987 CACTTTTCTA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
29 17 0.46
32 20 0.54
ACGTcount: A:0.11, C:0.33, G:0.01, T:0.55
Consensus pattern (30 bp):
TCTTCTTCCTTCTCTCTTTATACCTATCGT
Found at i:8670612 original size:34 final size:34
Alignment explanation
Indices: 8670574--8670640 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
8670564 GTTTTAGTTG
8670574 TCGATTAATGGATAAGCTTGGAATAAGTTTGCAA
1 TCGATTAATGGATAAGCTTGGAATAAGTTTGCAA
8670608 TCGATTAATGGATAAGCTTGGAATAAGTTTGCA
1 TCGATTAATGGATAAGCTTGGAATAAGTTTGCA
8670641 GTGAGAGAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.33
Consensus pattern (34 bp):
TCGATTAATGGATAAGCTTGGAATAAGTTTGCAA
Found at i:8671007 original size:20 final size:20
Alignment explanation
Indices: 8670962--8671000 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
8670952 CTATAATTGG
*
8670962 ATAACCTTGGTTAGGTTACC
1 ATAACCTTGATTAGGTTACC
8670982 ATAACCTTGATTAGGTTAC
1 ATAACCTTGATTAGGTTAC
8671001 TGTAACCGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (20 bp):
ATAACCTTGATTAGGTTACC
Found at i:8677100 original size:20 final size:21
Alignment explanation
Indices: 8677073--8677121 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
8677063 ATTTTATATA
8677073 TAAA-AAATTTATAAATA-AAT
1 TAAATAAATTTA-AAATATAAT
8677093 T-AATAAA-TTAAAATATAAT
1 TAAATAAATTTAAAATATAAT
8677112 TAAATAAATT
1 TAAATAAATT
8677122 CAATATAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
18 5 0.20
19 9 0.36
20 10 0.40
21 1 0.04
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (21 bp):
TAAATAAATTTAAAATATAAT
Found at i:8677130 original size:11 final size:9
Alignment explanation
Indices: 8677084--8677126 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
8677074 AAAAAATTTA
8677084 TAAATAAAT
1 TAAATAAAT
8677093 T-AATAAAT
1 TAAATAAAT
8677101 TAAAATATAAT
1 T-AAATA-AAT
8677112 TAAATAAAT
1 TAAATAAAT
*
8677121 TCAATA
1 TAAATA
8677127 TAAAATAGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
8 8 0.27
9 9 0.30
10 9 0.30
11 4 0.13
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (9 bp):
TAAATAAAT
Found at i:8677130 original size:26 final size:27
Alignment explanation
Indices: 8677084--8677142 Score: 77
Period size: 26 Copynumber: 2.2 Consensus size: 27
8677074 AAAAAATTTA
*
8677084 TAAATAAATTAATAAATTAAAATATAAT
1 TAAATAAATTAAT-AATTAAAATAGAAT
8677112 TAAATAAATTCAAT-A-TAAAATAGAAT
1 TAAATAAATT-AATAATTAAAATAGAAT
8677138 TAAAT
1 TAAAT
8677143 TTACACAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 15 0.52
27 1 0.03
28 10 0.34
29 3 0.10
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.34
Consensus pattern (27 bp):
TAAATAAATTAATAATTAAAATAGAAT
Found at i:8678040 original size:29 final size:29
Alignment explanation
Indices: 8677973--8678042 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
8677963 ATTTATACTA
*
8677973 AGGATTTATTTAAATACAAATTAAAAGTT
1 AGGATTTATTTAAATACAAACTAAAAGTT
* * *
8678002 AGGGGTTTATTTGAATA-AAACTAAAGGTTT
1 A-GGATTTATTTAAATACAAACTAAAAG-TT
8678032 AGGATTTATTT
1 AGGATTTATTT
8678043 TGTGTAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
29 18 0.53
30 16 0.47
ACGTcount: A:0.40, C:0.03, G:0.17, T:0.40
Consensus pattern (29 bp):
AGGATTTATTTAAATACAAACTAAAAGTT
Found at i:8685747 original size:22 final size:22
Alignment explanation
Indices: 8685715--8685757 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
8685705 TTCTACAAGC
* *
8685715 TAATTTTAAAAGTATATTTTTT
1 TAATTTAAAAAATATATTTTTT
8685737 TAATTTAAAAAATATATTTTT
1 TAATTTAAAAAATATATTTTT
8685758 GACATCGACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (22 bp):
TAATTTAAAAAATATATTTTTT
Found at i:8688032 original size:33 final size:34
Alignment explanation
Indices: 8687989--8688052 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 34
8687979 ATAATAATAT
*
8687989 TTTAAATCAAAATTTAACATGA-AAT-TTTAGAC
1 TTTAAATCAAAATGTAACATGATAATCTTTAGAC
*
8688021 TTTAACATCAAAATGTAATATGATAATCTTTA
1 TTTAA-ATCAAAATGTAACATGATAATCTTTA
8688053 AGGTTTTGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 5 0.19
33 15 0.56
34 3 0.11
35 4 0.15
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.39
Consensus pattern (34 bp):
TTTAAATCAAAATGTAACATGATAATCTTTAGAC
Found at i:8688824 original size:32 final size:32
Alignment explanation
Indices: 8688755--8688824 Score: 122
Period size: 32 Copynumber: 2.2 Consensus size: 32
8688745 TATGATTTCA
* *
8688755 AAAAAAATTCAATTTAGATTTGAATAAATTTT
1 AAAAATATTCAATTCAGATTTGAATAAATTTT
8688787 AAAAATATTCAATTCAGATTTGAATAAATTTT
1 AAAAATATTCAATTCAGATTTGAATAAATTTT
8688819 AAAAAT
1 AAAAAT
8688825 TCATAATTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (32 bp):
AAAAATATTCAATTCAGATTTGAATAAATTTT
Found at i:8689368 original size:13 final size:13
Alignment explanation
Indices: 8689350--8689379 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8689340 TCAGAATTAA
8689350 AAAAAAAAAAAAG
1 AAAAAAAAAAAAG
*
8689363 AAAAAAAAAAGAG
1 AAAAAAAAAAAAG
8689376 AAAA
1 AAAA
8689380 GACTTCCTCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAAAG
Found at i:8690554 original size:87 final size:87
Alignment explanation
Indices: 8690453--8690622 Score: 234
Period size: 87 Copynumber: 2.0 Consensus size: 87
8690443 CAATGTTACC
*
8690453 CGTCAATTACTTCAAACACAAATAGAAACGGTTCAACAAATT-TGGCACCGACATCCTAATTATT
1 CGTCAATTACTTCAAACACAAATAGAAACGGTTCAAC-AATTCTGACACCGACATCCTAATTATT
*
8690517 TAAAATTCAAACCATTTAATACT
65 TAAAAGTCAAACCATTTAATACT
* * ** * *
8690540 CGTCAATTATTTCAAACACAAATGGATTCGGTTCAACGATTCTTACACCGACATCCTAATTATTT
1 CGTCAATTACTTCAAACACAAATAGAAACGGTTCAACAATTCTGACACCGACATCCTAATTATTT
* *
8690605 GAAAGTCAAACCCTTTAA
66 AAAAGTCAAACCATTTAA
8690623 AACAAGTTTT
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
86 3 0.04
87 69 0.96
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.30
Consensus pattern (87 bp):
CGTCAATTACTTCAAACACAAATAGAAACGGTTCAACAATTCTGACACCGACATCCTAATTATTT
AAAAGTCAAACCATTTAATACT
Found at i:8693625 original size:31 final size:29
Alignment explanation
Indices: 8693535--8693684 Score: 106
Period size: 31 Copynumber: 5.0 Consensus size: 29
8693525 TGTTAAGGAA
8693535 TTATTTAAGTATAAATTAAAAATTAAAGAAT
1 TTATTTAA-TATAAATTAAAAATTAAA-AAT
* * *
8693566 TTATTTCCATACAAATTAAAAAAATAAAAAT
1 TTATTT-AATATAAATT-AAAAATTAAAAAT
* * *
8693597 TTATTTGAATATAAATTAAAATTTTAAAAC
1 TTATTT-AATATAAATTAAAAATTAAAAAT
* ** * *
8693627 CTATTTAAT-TGCATTAAAAGTATAAATAT
1 TTATTTAATATAAATTAAAAAT-TAAAAAT
*
8693656 TTATTTAA-ATAAAATGATAAAATTAAAAA
1 TTATTTAATAT-AAATTA-AAAATTAAAAA
8693685 ACTATTATTT
Statistics
Matches: 90, Mismatches: 23, Indels: 13
0.71 0.18 0.10
Matches are distributed among these distances:
28 9 0.10
29 15 0.17
30 22 0.24
31 34 0.38
32 10 0.11
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (29 bp):
TTATTTAATATAAATTAAAAATTAAAAAT
Found at i:8700421 original size:2 final size:2
Alignment explanation
Indices: 8700414--8700455 Score: 50
Period size: 2 Copynumber: 21.5 Consensus size: 2
8700404 CTAGCAACAA
* * *
8700414 AT AT AT AT AT AT AT AT AT AT AT AG AT A- AG AT AT AG AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8700455 A
1 A
8700456 ACAACTGCAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.40
Consensus pattern (2 bp):
AT
Found at i:8700591 original size:21 final size:20
Alignment explanation
Indices: 8700558--8700606 Score: 89
Period size: 21 Copynumber: 2.4 Consensus size: 20
8700548 AACAATTAAC
8700558 TACAAATGTTCAATAGATAT
1 TACAAATGTTCAATAGATAT
8700578 TACAAATAGTTCAATAGATAT
1 TACAAAT-GTTCAATAGATAT
8700599 TACAAATG
1 TACAAATG
8700607 ATCATGCTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 8 0.29
21 20 0.71
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.33
Consensus pattern (20 bp):
TACAAATGTTCAATAGATAT
Found at i:8701401 original size:15 final size:15
Alignment explanation
Indices: 8701381--8701412 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
8701371 AACAACGGGC
8701381 ATAAATTGAAACGAT
1 ATAAATTGAAACGAT
8701396 ATAAATTGAAACGAT
1 ATAAATTGAAACGAT
8701411 AT
1 AT
8701413 CTTGGGCTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.06, G:0.12, T:0.28
Consensus pattern (15 bp):
ATAAATTGAAACGAT
Found at i:8702306 original size:119 final size:119
Alignment explanation
Indices: 8702166--8703062 Score: 573
Period size: 119 Copynumber: 7.5 Consensus size: 119
8702156 CGAGGTCAAG
* ** * * *
8702166 AATAAATGACTAGGATGAAACTACGAATCATAAGAGATAATCTGGACTGAGCCAAGATCAAGAGA
1 AATAAATGATTAGGACAAAACCACGAATCATAAGAGATGATCTGGACTGAGCCAAGATCAAGGGA
* * * **
8702231 CCTAGGCGAAACCACAAGTCAAAATAAAGTGA-CTAAGA-CTGAGTCAAGGTTGAA
66 CCAAGGCGAAACCACGAGTCAAAATAAAGCGATC-AAGATC-GAGTCAAGGTAAAA
* ** * * * *
8702285 AATAAATTATTAGGACAAAACTGCGAATCATAAGAGATGATATGGACTAAGCAAAGAT-TAGGGA
1 AATAAATGATTAGGACAAAACCACGAATCATAAGAGATGATCTGGACTGAGCCAAGATCAAGGG-
* * * **
8702349 ACCGAAAG-GAAACCACGAGTCAAAATAAAGTGATCAGGATTGAGTC-AGTCAATGTCGAA
65 ACC-AAGGCGAAACCACGAGTCAAAATAAAGCGATCA--A--GA-TCGAGTCAAGGTAAAA
* * * * * *
8702408 AATAAATGATCGAGG-CAAAACCATGAATTATAAGGGATGATCTGGACTAAGCCAAGATCAAGTG
1 AATAAATGAT-TAGGACAAAACCACGAATCATAAGAGATGATCTGGACTGAGCCAAGATCAAGGG
* ** ** * * *
8702472 ACCGA-GATAAACCACGAGTCAAAATAAAATGACCAAAATCGAGT-AGAAGTAAAA
65 ACCAAGGCGAAACCACGAGTCAAAATAAAGCGATCAAGATCGAGTCA-AGGTAAAA
* ** * * * * * *
8702526 AATAAATGATCATGG-TGAAACCACGAATCATAAGAAATGATTTTGATTGAACCAAGATCAAGTG
1 AATAAATGATTA-GGACAAAACCACGAATCATAAGAGATGATCTGGACTGAGCCAAGATCAAGGG
* * * * * * * * * *
8702590 A-CTAGGACGAAATCACAAGTCAAAATAAAACGATCAGGATCGAATCGATGTCAAG
65 ACCAAGG-CGAAACCACGAGTCAAAATAAAGCGATCAAGATCGAGTCAAGGTAAAA
* * * *
8702645 AATAAATGATT-GAGACGAAACAACAAATCATAAGGGATGATCTGGACTGAGCCAAGATCAAGGG
1 AATAAATGATTAG-GACAAAACCACGAATCATAAGAGATGATCTGGACTGAGCCAAGATCAAGGG
* * * * * * ** *
8702709 ATCAAGACGAAACCACGAGTCAAAATAAAGC-AACCAGAACAAAGTTGAGGTCAAA
65 ACCAAGGCGAAACCACGAGTCAAAATAAAGCGATCAAGATC-GAGTCAAGGTAAAA
* * * * * * *
8702764 AATAAATGATTGGGGCGAAACCACAAATCATAAGGGATGATCTAGATTGAGCCAAGATCAAGGGA
1 AATAAATGATTAGGACAAAACCACGAATCATAAGAGATGATCTGGACTGAGCCAAGATCAAGGGA
** * * * **
8702829 CCAAGATGAAACCACGAGTCAAAATAAAGCGATCAGGATAGAATTGAGGTAAAA
66 CCAAGGCGAAACCACGAGTCAAAATAAAGCGATCAAGATCGAGTCAAGGTAAAA
* * * * *
8702883 AATAAATGA-TCGGAGCAAAACCACAAATCATAAGAAATGATCTGGATTGAGCCAAGATCAAGTG
1 AATAAATGATTAGGA-CAAAACCACGAATCATAAGAGATGATCTGGACTGAGCCAAGATCAAGGG
** * * * * * * * *
8702947 A-CTGGGATGAAATCACAAATCAAAATAAAACAACCAAGATCGAGTCGAGGTAAAA
65 ACCAAGG-CGAAACCACGAGTCAAAATAAAGCGATCAAGATCGAGTCAAGGTAAAA
* ** * * * * *
8703002 AATAAATGA-TCGAGATGAAACCATGAATCATAAAAAATGATATGGACTAAGCCAAGATCAA
1 AATAAATGATTAG-GACAAAACCACGAATCATAAGAGATGATCTGGACTGAGCCAAGATCAA
8703063 ATGAGTGGAT
Statistics
Matches: 623, Mismatches: 128, Indels: 54
0.77 0.16 0.07
Matches are distributed among these distances:
117 7 0.01
118 75 0.12
119 431 0.69
120 14 0.02
121 2 0.00
122 26 0.04
123 61 0.10
124 6 0.01
125 1 0.00
ACGTcount: A:0.46, C:0.15, G:0.21, T:0.18
Consensus pattern (119 bp):
AATAAATGATTAGGACAAAACCACGAATCATAAGAGATGATCTGGACTGAGCCAAGATCAAGGGA
CCAAGGCGAAACCACGAGTCAAAATAAAGCGATCAAGATCGAGTCAAGGTAAAA
Found at i:8702940 original size:357 final size:355
Alignment explanation
Indices: 8702406--8703062 Score: 866
Period size: 357 Copynumber: 1.8 Consensus size: 355
8702396 GTCAATGTCG
** * * *
8702406 AAAATAAATGATCGAGGCAAAACCATGAATTATAAGGGATGATCTGGACTAAGCCAAGATCAAGT
1 AAAATAAATGATCGAGGCAAAACCACAAATCATAAGGGATGATCTAGACTAAGCCAAGATCAAGG
* * * *
8702471 GACCGAGATAAACCACGAGTCAAAATAAAATGACCAAAATCGAGTAGAAGTAAAAAATAAATGAT
66 GACCAAGATAAACCACGAGTCAAAATAAAACGACCAAAATAGAATAGAAGTAAAAAATAAATGAT
* * * *
8702536 CATGGTGAAACCACGAATCATAAGAAATGATTTTGATTGAACCAAGATCAAGTGACTAGGACGAA
131 CA-GGAGAAACCACAAATCATAAGAAATGATCTGGATTGAACCAAGATCAAGTGACTAGGACGAA
* * * * * * * *
8702601 ATCACAAGTCAAAATAAAACGATCAGGATCGAATCGATGTCAAGAATAAATGATTGAGACGAAAC
195 ATCACAAATCAAAATAAAACAACCAAGATCGAATCGAGGTAAAAAATAAATGATCGAGACGAAAC
*** * *
8702666 AACAAATCATAAGGGATGATCTGGACTGAGCCAAGATCAAGGGATCAAGACGAAACCACGAGTCA
260 AACAAATCATAAAAAATGATATGGACTAAGCCAAGATCAAGGGATCAAGACGAAACCACGAGTCA
8702731 AAATAAAGCAACCAGAACAAAGTTGAGGTCA
325 AAATAAAGCAACCAGAACAAAGTTGAGGTCA
* * * * *
8702762 AAAATAAATGATTGGGGCGAAACCACAAATCATAAGGGATGATCTAGATTGAGCCAAGATCAAGG
1 AAAATAAATGATCGAGGCAAAACCACAAATCATAAGGGATGATCTAGACTAAGCCAAGATCAAGG
* * ** * *
8702827 GACCAAGATGAAACCACGAGTCAAAATAAAGCGATCAGGATAGAATTGAGGTAAAAAATAAATGA
66 GACCAAGAT-AAACCACGAGTCAAAATAAAACGACCAAAATAGAATAGAAGTAAAAAATAAATGA
* * *
8702892 TC-GGAGCAAAACCACAAATCATAAGAAATGATCTGGATTGAGCCAAGATCAAGTGACTGGGATG
130 TCAGGAG--AAACCACAAATCATAAGAAATGATCTGGATTGAACCAAGATCAAGTGACTAGGACG
* *
8702956 AAATCACAAATCAAAATAAAACAACCAAGATCGAGTCGAGGTAAAAAATAAATGATCGAGATGAA
193 AAATCACAAATCAAAATAAAACAACCAAGATCGAATCGAGGTAAAAAATAAATGATCGAGACGAA
* **
8703021 ACCATGAATCATAAAAAATGATATGGACTAAGCCAAGATCAA
258 ACAACAAATCATAAAAAATGATATGGACTAAGCCAAGATCAA
8703063 ATGAGTGGAT
Statistics
Matches: 253, Mismatches: 45, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
355 3 0.01
356 63 0.25
357 187 0.74
ACGTcount: A:0.47, C:0.15, G:0.21, T:0.17
Consensus pattern (355 bp):
AAAATAAATGATCGAGGCAAAACCACAAATCATAAGGGATGATCTAGACTAAGCCAAGATCAAGG
GACCAAGATAAACCACGAGTCAAAATAAAACGACCAAAATAGAATAGAAGTAAAAAATAAATGAT
CAGGAGAAACCACAAATCATAAGAAATGATCTGGATTGAACCAAGATCAAGTGACTAGGACGAAA
TCACAAATCAAAATAAAACAACCAAGATCGAATCGAGGTAAAAAATAAATGATCGAGACGAAACA
ACAAATCATAAAAAATGATATGGACTAAGCCAAGATCAAGGGATCAAGACGAAACCACGAGTCAA
AATAAAGCAACCAGAACAAAGTTGAGGTCA
Found at i:8703057 original size:238 final size:237
Alignment explanation
Indices: 8702191--8703062 Score: 776
Period size: 238 Copynumber: 3.7 Consensus size: 237
8702181 TGAAACTACG
* * * ** *
8702191 AATCATAAGAGATAATCTGGACTGAGCCAAGATCAAGAGACCT-AGGCGAAACCACAAGTCAAAA
1 AATCATAAGGGATGATCTGGACTGAGCCAAGATCAAGTGA-CTGAGATGAAACCACGAGTCAAAA
*** * ** * * ** **
8702255 TAAAGTGACTAAGA-CTGAGTCA-AGGTTGAAAATAAATTAT-TAGGACAAAACTGCGAATCATA
65 TAAAACAACCAAGATC-GAGT-AGAGGTAAAAAATAAATGATCGAGG-TGAAACCACGAATCATA
* * * * *
8702317 AGAGATGATATGGACTAAGCAAAGAT-TAGGGAACCGAA-AGGAAACCACGAGTCAAAATAAAGT
127 AGAAATGATATGGACTAAGCCAAGATCAAGGG-ACC-AAGACGAAACCACGAGTCAAAATAAAGC
* * * **
8702380 GATCAGGATTGAGTCAGTCAATGTCGAAAATAAATGATCGAGGCAAAACCATG
190 GATCAGGA-T-AG--AATCGATGTCAAAAATAAATGATCGA-GCAAAACCACA
* * *
8702433 AATTATAAGGGATGATCTGGACTAAGCCAAGATCAAGTGACCGAGAT-AAACCACGAGTCAAAAT
1 AATCATAAGGGATGATCTGGACTGAGCCAAGATCAAGTGACTGAGATGAAACCACGAGTCAAAAT
** * *
8702497 AAAATGACCAAAATCGAGTAGAAGTAAAAAATAAATGATC-ATGGTGAAACCACGAATCATAAGA
66 AAAACAACCAAGATCGAGTAGAGGTAAAAAATAAATGATCGA-GGTGAAACCACGAATCATAAGA
* * * * * * * * *
8702561 AATGATTTTGATTGAA-CCAAGATCAAGTGACTAGGACGAAATCACAAGTCAAAATAAAACGATC
130 AATGATATGGACT-AAGCCAAGATCAAGGGACCAAGACGAAACCACGAGTCAAAATAAAGCGATC
* * * * *
8702625 AGGATCGAATCGATGTCAAGAATAAATGATTGAGACGAAACAACA
194 AGGATAGAATCGATGTCAAAAATAAATGATCGAG-CAAAACCACA
* * *
8702670 AATCATAAGGGATGATCTGGACTGAGCCAAGATCAAGGGA-TCAAGACGAAACCACGAGTCAAAA
1 AATCATAAGGGATGATCTGGACTGAGCCAAGATCAAGTGACT-GAGATGAAACCACGAGTCAAAA
* * * * * * * * *
8702734 TAAAGCAACC-AGAACAAAGTTGAGGTCAAAAATAAATGATTGGGGCGAAACCACAAATCATAAG
65 TAAAACAACCAAGATC-GAGTAGAGGTAAAAAATAAATGATCGAGGTGAAACCACGAATCATAAG
** * * * * *
8702798 GGATGATCTAGATTGAGCCAAGATCAAGGGACCAAGATGAAACCACGAGTCAAAATAAAGCGATC
129 AAATGATATGGACTAAGCCAAGATCAAGGGACCAAGACGAAACCACGAGTCAAAATAAAGCGATC
* * *
8702863 AGGATAGAATTGAGGTAAAAAATAAATGATCGGAGCAAAACCACA
194 AGGATAGAATCGATGTCAAAAATAAATGATC-GAGCAAAACCACA
** * * * * *
8702908 AATCATAAGAAATGATCTGGATTGAGCCAAGATCAAGTGACTGGGATGAAATCACAAATCAAAAT
1 AATCATAAGGGATGATCTGGACTGAGCCAAGATCAAGTGACTGAGATGAAACCACGAGTCAAAAT
* * * *
8702973 AAAACAACCAAGATCGAGTCGAGGTAAAAAATAAATGATCGAGATGAAACCATGAATCATAAAAA
66 AAAACAACCAAGATCGAGTAGAGGTAAAAAATAAATGATCGAGGTGAAACCACGAATCATAAGAA
8703038 ATGATATGGACTAAGCCAAGATCAA
131 ATGATATGGACTAAGCCAAGATCAA
8703063 ATGAGTGGAT
Statistics
Matches: 502, Mismatches: 111, Indels: 38
0.77 0.17 0.06
Matches are distributed among these distances:
236 1 0.00
237 71 0.14
238 266 0.53
239 9 0.02
240 3 0.01
241 107 0.21
242 45 0.09
ACGTcount: A:0.46, C:0.15, G:0.21, T:0.18
Consensus pattern (237 bp):
AATCATAAGGGATGATCTGGACTGAGCCAAGATCAAGTGACTGAGATGAAACCACGAGTCAAAAT
AAAACAACCAAGATCGAGTAGAGGTAAAAAATAAATGATCGAGGTGAAACCACGAATCATAAGAA
ATGATATGGACTAAGCCAAGATCAAGGGACCAAGACGAAACCACGAGTCAAAATAAAGCGATCAG
GATAGAATCGATGTCAAAAATAAATGATCGAGCAAAACCACA
Found at i:8703836 original size:46 final size:47
Alignment explanation
Indices: 8703768--8703876 Score: 157
Period size: 46 Copynumber: 2.3 Consensus size: 47
8703758 GCACTTTCTA
* * * *
8703768 GTTTTCAACTTGAGTCTATTCCTTTGGATTTAAGTTAC-CCTTTCAG
1 GTTTTCAACTTGAGCCTATTCCTTTAGATCTAAGTCACACCTTTCAG
* *
8703814 GTTTTCAACTTGAGCCTCTTCCTTTAGATCTAAGTCACACTTTTCAG
1 GTTTTCAACTTGAGCCTATTCCTTTAGATCTAAGTCACACCTTTCAG
8703861 GTTTTCAACTTGAGCC
1 GTTTTCAACTTGAGCC
8703877 CCCCTTTTTT
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
46 33 0.59
47 23 0.41
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (47 bp):
GTTTTCAACTTGAGCCTATTCCTTTAGATCTAAGTCACACCTTTCAG
Found at i:8713668 original size:18 final size:19
Alignment explanation
Indices: 8713616--8713669 Score: 69
Period size: 18 Copynumber: 3.0 Consensus size: 19
8713606 ATACATATTG
8713616 AAAAGGGAA-ATAAATAAT
1 AAAAGGGAATATAAATAAT
* *
8713634 -AAAGCGAATATAGATAAT
1 AAAAGGGAATATAAATAAT
8713652 AAAAGGGAATA-AAATAAT
1 AAAAGGGAATATAAATAAT
8713670 TTAAACCTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
17 7 0.23
18 14 0.47
19 9 0.30
ACGTcount: A:0.63, C:0.02, G:0.17, T:0.19
Consensus pattern (19 bp):
AAAAGGGAATATAAATAAT
Found at i:8715333 original size:3 final size:3
Alignment explanation
Indices: 8715327--8715364 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
8715317 AAAAAAACAA
*
8715327 AAT AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8715365 ACTATCTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:8717966 original size:191 final size:191
Alignment explanation
Indices: 8717642--8718020 Score: 742
Period size: 191 Copynumber: 2.0 Consensus size: 191
8717632 GTTACATCTT
8717642 TATAAATTGGAGATTGGTTAGGCCTTAGACTAAACAAAGAAAGGTATCCTTATCCAATCATTTCA
1 TATAAATTGGAGATTGGTTAGGCCTTAGACTAAACAAAGAAAGGTATCCTTATCCAATCATTTCA
8717707 ACCCTACCCCCATTCACAAGATTAACCTAAGTTCTCAAGATAAAACCAAAATTCTAAGTTCCTTC
66 ACCCTACCCCCATTCACAAGATTAACCTAAGTTCTCAAGATAAAACCAAAATTCTAAGTTCCTTC
8717772 CTTTGTGCTATCAACACCAAAATTAAACCATTTATATATCAAATGATAAAACCATTTGATA
131 CTTTGTGCTATCAACACCAAAATTAAACCATTTATATATCAAATGATAAAACCATTTGATA
8717833 TATAAATTGGAGATTGGTTAGGCCTTAGACTAAACAAAGAAAGGTATCCTTATCCAATCATTTCA
1 TATAAATTGGAGATTGGTTAGGCCTTAGACTAAACAAAGAAAGGTATCCTTATCCAATCATTTCA
8717898 ACCCTACCCCCATTCACAAGATTAACCTAAGTTCTCAAGA-AAAACCCAAAATTCTAAGTTCCTT
66 ACCCTACCCCCATTCACAAGATTAACCTAAGTTCTCAAGATAAAA-CCAAAATTCTAAGTTCCTT
8717962 CCTTTGTGCTATCAACACCAAAATTAAACCATTTATATATCAAATGATAAAACCATTTG
130 CCTTTGTGCTATCAACACCAAAATTAAACCATTTATATATCAAATGATAAAACCATTTG
8718021 TCGTAACAGT
Statistics
Matches: 187, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
190 4 0.02
191 183 0.98
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.30
Consensus pattern (191 bp):
TATAAATTGGAGATTGGTTAGGCCTTAGACTAAACAAAGAAAGGTATCCTTATCCAATCATTTCA
ACCCTACCCCCATTCACAAGATTAACCTAAGTTCTCAAGATAAAACCAAAATTCTAAGTTCCTTC
CTTTGTGCTATCAACACCAAAATTAAACCATTTATATATCAAATGATAAAACCATTTGATA
Found at i:8719223 original size:15 final size:14
Alignment explanation
Indices: 8719196--8719243 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
8719186 TAACATGCTT
*
8719196 AAATATTAATAATA
1 AAATATAAATAATA
*
8719210 AAATTTAAAATAATCA
1 AAATAT-AAATAAT-A
*
8719226 AAATATATATAATA
1 AAATATAAATAATA
8719240 AAAT
1 AAAT
8719244 CAAAAAGTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 10 0.36
15 12 0.43
16 6 0.21
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (14 bp):
AAATATAAATAATA
Found at i:8720518 original size:50 final size:49
Alignment explanation
Indices: 8720385--8720520 Score: 146
Period size: 50 Copynumber: 2.7 Consensus size: 49
8720375 AAAAAAATTT
* * * * **
8720385 AAAAGCTCTTCTAATTAGAGACTCGACAACTTTTAAAAGTTTCATCTTGG
1 AAAAGCTCTTCTAAATAGAGGCTCAACAAC-TTTAAAAATTTCATCTTAA
* * * * *
8720435 AAAAGCTCTTTTAAGTAGATGCTCAATAACTTTAAAAATTTTATCTTAAA
1 AAAAGCTCTTCTAAATAGAGGCTCAACAACTTTAAAAATTTCATCTT-AA
*
8720485 AAAAGCTCATCTAAATAGAGGCTCAACAACTTTAAA
1 AAAAGCTCTTCTAAATAGAGGCTCAACAACTTTAAA
8720521 TTGAACCATT
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
49 15 0.21
50 55 0.79
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.32
Consensus pattern (49 bp):
AAAAGCTCTTCTAAATAGAGGCTCAACAACTTTAAAAATTTCATCTTAA
Found at i:8720681 original size:42 final size:42
Alignment explanation
Indices: 8720629--8720812 Score: 189
Period size: 42 Copynumber: 4.4 Consensus size: 42
8720619 GAACTCAAAA
* *
8720629 ATCATCATCGAAAAGATGTAATTCAAACTTTAACACTCAGAT
1 ATCACCATCGAAAAGATGCAATTCAAACTTTAACACTCAGAT
* *
8720671 ATCACCATCGAGAAA-ATACAATTCAAACTTTATCACTC-GAT
1 ATCACCATCGA-AAAGATGCAATTCAAACTTTAACACTCAGAT
* * **
8720712 ATCACCATTGAGAAGATGCAATTCAAACTTTAACACTTGGAT
1 ATCACCATCGAAAAGATGCAATTCAAACTTTAACACTCAGAT
* * *
8720754 ATCA--TTGCTAAGAAGATGCAATTCAAACTTTAAGACT-AGGAT
1 ATCACCAT-CGAA-AAGATGCAATTCAAACTTTAACACTCA-GAT
*
8720796 ATCACCATCGATAAGAT
1 ATCACCATCGAAAAGAT
8720813 ACAAATGACT
Statistics
Matches: 116, Mismatches: 18, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
40 3 0.03
41 34 0.29
42 73 0.63
43 5 0.04
44 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.12, T:0.28
Consensus pattern (42 bp):
ATCACCATCGAAAAGATGCAATTCAAACTTTAACACTCAGAT
Done.