Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 47 of 117
Found at i:8720780 original size:83 final size:84
Alignment explanation
Indices: 8720629--8720812 Score: 203
Period size: 83 Copynumber: 2.2 Consensus size: 84
8720619 GAACTCAAAA
* * * *
8720629 ATCATCATCGAAAAGATGTAATTCAAACTTTAACACTCAGATATCACCATCGAGAAAATACAATT
1 ATCACCATCGAGAAGATGCAATTCAAACTTTAACACTCAGATATCACCATCAAGAAAATACAATT
*
8720694 CAAACTTTATCACT-CGAT
66 CAAACTTTAACACTACGAT
* ** * * *
8720712 ATCACCATTGAGAAGATGCAATTCAAACTTTAACACTTGGATATCA--TTGCTAAGAAGATGCAA
1 ATCACCATCGAGAAGATGCAATTCAAACTTTAACACTCAGATATCACCAT-C-AAGAAAATACAA
* *
8720775 TTCAAACTTTAAGACTAGGAT
64 TTCAAACTTTAACACTACGAT
*
8720796 ATCACCATCGATAAGAT
1 ATCACCATCGAGAAGAT
8720813 ACAAATGACT
Statistics
Matches: 83, Mismatches: 15, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
81 1 0.01
82 1 0.01
83 63 0.76
84 18 0.22
ACGTcount: A:0.41, C:0.20, G:0.12, T:0.28
Consensus pattern (84 bp):
ATCACCATCGAGAAGATGCAATTCAAACTTTAACACTCAGATATCACCATCAAGAAAATACAATT
CAAACTTTAACACTACGAT
Found at i:8720936 original size:118 final size:118
Alignment explanation
Indices: 8720773--8720986 Score: 322
Period size: 118 Copynumber: 1.8 Consensus size: 118
8720763 AAGAAGATGC
* * *
8720773 AATTCAAACTTTAAGACTAGGATATCACCATCGATAAGATACAAATGACTTCGAATATCACCACT
1 AATTCAAACTTTAAGACTAGGATATCACCACCGAGAAGATACAAATGACTTCAAATATCACCAC-
* * * *
8720838 GAAGGAAACTTGAATATCACTATCAAAAAAATGTAAATGTAGAAAAAGAATGTA
65 CAAAGAAACTCGAATATCACCATCAAAAAAATGTAAATGTAGAAAAAGAATGTA
* * *
8720892 AATTCAAACTTTAA-ACTCGGATATCACCACCGAGAAGATGCAAATGATTTCAAATATCACCACC
1 AATTCAAACTTTAAGACTAGGATATCACCACCGAGAAGATACAAATGACTTCAAATATCACCACC
8720956 AAAGAAACTCGAATATCACCATCAAAAAAAT
66 AAAGAAACTCGAATATCACCATCAAAAAAAT
8720987 ATAATTCAAG
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
117 28 0.33
118 43 0.51
119 14 0.16
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.23
Consensus pattern (118 bp):
AATTCAAACTTTAAGACTAGGATATCACCACCGAGAAGATACAAATGACTTCAAATATCACCACC
AAAGAAACTCGAATATCACCATCAAAAAAATGTAAATGTAGAAAAAGAATGTA
Found at i:8721014 original size:42 final size:42
Alignment explanation
Indices: 8720962--8721400 Score: 268
Period size: 42 Copynumber: 10.3 Consensus size: 42
8720952 CACCAAAGAA
* * * * *
8720962 ACTCGAATATCACCATCAAAAAAATATAATTCAAGCTTTAAC
1 ACTCGAATATCACCATCGAGAAGATACAATTCAAACTTTAAC
* *
8721004 ACTCAAATATCACCATCGAGAAGATACAATTC-AATTTTAAC
1 ACTCGAATATCACCATCGAGAAGATACAATTCAAACTTTAAC
* * * * *
8721045 ACTCGAATATCACCACCGA-AGAGATGCAATCCAAATTTTATC
1 ACTCGAATATCACCATCGAGA-AGATACAATTCAAACTTTAAC
* **
8721087 ACT-TAGATATCACCATCGAGAAGATGTAATTCAAACTTTAAC
1 ACTCGA-ATATCACCATCGAGAAGATACAATTCAAACTTTAAC
* * * *
8721129 ACTTGAATATCACCACCGAGAATATACAATTTAAACTTTAAC
1 ACTCGAATATCACCATCGAGAAGATACAATTCAAACTTTAAC
* * * *
8721171 ACTCGTATATCACCA-CGGAGAATATGCAATTCAAACTTTATC
1 ACTCGAATATCACCATC-GAGAAGATACAATTCAAACTTTAAC
* * * * *
8721213 ATTAAGATATAATCA-C-T-GAAAAGATGTAATTCAAATCAAACTTTATC
1 ACT-CGA-AT-ATCACCATCGAGAAGA--T-A--CAATTCAAACTTTAAC
** * * ** * *
8721260 A-TTTAGATATCACCA-CTAAAAAGATGTAATTCAAACTGTAAT
1 ACTCGA-ATATCACCATC-GAGAAGATACAATTCAAACTTTAAC
* *
8721302 ACTC-AGATATCACCACCAAGAGAAGATACAATTCAAATTTTAAC
1 ACTCGA-ATATCACCATC--GAGAAGATACAATTCAAACTTTAAC
* * * * * *
8721346 ACTCTACTATCATCATCGAGAAGATGCAATTTAAATTTTAAC
1 ACTCGAATATCACCATCGAGAAGATACAATTCAAACTTTAAC
8721388 ACTCGAATATCAC
1 ACTCGAATATCAC
8721401 TAATCTAAAA
Statistics
Matches: 311, Mismatches: 63, Indels: 46
0.74 0.15 0.11
Matches are distributed among these distances:
40 1 0.00
41 35 0.11
42 199 0.64
43 5 0.02
44 38 0.12
45 10 0.03
46 1 0.00
47 22 0.07
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (42 bp):
ACTCGAATATCACCATCGAGAAGATACAATTCAAACTTTAAC
Found at i:8721181 original size:84 final size:84
Alignment explanation
Indices: 8720989--8721400 Score: 307
Period size: 84 Copynumber: 4.8 Consensus size: 84
8720979 AAAAAAATAT
* * * * *
8720989 AATTCAAGCTTTAACACTCAAATATCACCATCGAGAAGATACAATTC-AATTTTAACACTCGAAT
1 AATTCAAACTTTAACACTC-GATATCACCATCGAGAAGATGCAATTCAAACTTTAACACTTGAAT
*
8721053 ATCACCACCGA-AGAGATGC
65 ATCACCACCGAGAGAGATAC
* * * * *
8721072 AATCCAAATTTTATCACTTAGATATCACCATCGAGAAGATGTAATTCAAACTTTAACACTTGAAT
1 AATTCAAACTTTAACAC-TCGATATCACCATCGAGAAGATGCAATTCAAACTTTAACACTTGAAT
*
8721137 ATCACCACCGAGA-ATATAC
65 ATCACCACCGAGAGAGATAC
* * * *
8721156 AATTTAAACTTTAACACTCGTATATCACCA-CGGAGAATATGCAATTCAAACTTTATCA-TTAAG
1 AATTCAAACTTTAACACTCG-ATATCACCATC-GAGAAGATGCAATTCAAACTTTAACACTTGA-
* * * * *
8721219 ATATAATCACTGAAAAGATGTAATTC
63 ATATCACCACCG-AGAGA-G--ATAC
* * * * * * * * * *
8721245 AAATCAAACTTTATCATTTAGATATCACCA-CTAAAAAGATGTAATTCAAACTGTAATAC-TCAG
1 AATTCAAACTTTAACA-CTCGATATCACCATC-GAGAAGATGCAATTCAAACTTTAACACTTGA-
*
8721308 ATATCACCACCAAGAGAAGATAC
63 ATATCACCACCGAGAG-AGATAC
* * * * * *
8721331 AATTCAAATTTTAACACTCTACTATCATCATCGAGAAGATGCAATTTAAATTTTAACACTCGAAT
1 AATTCAAACTTTAACACTCGA-TATCACCATCGAGAAGATGCAATTCAAACTTTAACACTTGAAT
8721396 ATCAC
65 ATCAC
8721401 TAATCTAAAA
Statistics
Matches: 249, Mismatches: 63, Indels: 31
0.73 0.18 0.09
Matches are distributed among these distances:
83 43 0.17
84 85 0.34
85 5 0.02
86 51 0.20
87 2 0.01
88 4 0.02
89 57 0.23
90 2 0.01
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.28
Consensus pattern (84 bp):
AATTCAAACTTTAACACTCGATATCACCATCGAGAAGATGCAATTCAAACTTTAACACTTGAATA
TCACCACCGAGAGAGATAC
Found at i:8721237 original size:126 final size:125
Alignment explanation
Indices: 8720968--8721247 Score: 332
Period size: 126 Copynumber: 2.2 Consensus size: 125
8720958 AGAAACTCGA
* * * * * *
8720968 ATATCACCATCAAAAAAATATAATTCAAGCTTTAACACTCAAATATCACCATCGAGAAGATACAA
1 ATATAACCATCGAAAAGATGTAATTCAAACTTTAACACTCAAATATCACCACCGAGAAGATACAA
* * *
8721033 TTCAATTTTAACACTCGAATATCACCACCGAAGAGATGCAATCCAAATTTTATCACTTAG
66 TTAAACTTTAACACTCGAATATCACCACCGAAGAGATGCAATCCAAACTTTATCACTTAG
* * ** *
8721093 ATATCACCATCGAGAAGATGTAATTCAAACTTTAACACTTGAATATCACCACCGAGAATATACAA
1 ATATAACCATCGAAAAGATGTAATTCAAACTTTAACACTCAAATATCACCACCGAGAAGATACAA
* * * *
8721158 TTTAAACTTTAACACTCGTATATCACCA-CGGAGAATATGCAATTCAAACTTTATCA-TTAAG
66 -TTAAACTTTAACACTCGAATATCACCACCGAAG-AGATGCAATCCAAACTTTATCACTT-AG
*
8721219 ATATAATCA-CTGAAAAGATGTAATTCAAA
1 ATATAACCATC-GAAAAGATGTAATTCAAA
8721248 TCAAACTTTA
Statistics
Matches: 132, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
125 63 0.48
126 69 0.52
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (125 bp):
ATATAACCATCGAAAAGATGTAATTCAAACTTTAACACTCAAATATCACCACCGAGAAGATACAA
TTAAACTTTAACACTCGAATATCACCACCGAAGAGATGCAATCCAAACTTTATCACTTAG
Found at i:8721255 original size:47 final size:47
Alignment explanation
Indices: 8721201--8721294 Score: 152
Period size: 47 Copynumber: 2.0 Consensus size: 47
8721191 AATATGCAAT
* *
8721201 TCAAACTTTATCATTAAGATATAATCACTGAAAAGATGTAATTCAAA
1 TCAAACTTTATCATTAAGATATAACCACTAAAAAGATGTAATTCAAA
* *
8721248 TCAAACTTTATCATTTAGATATCACCACTAAAAAGATGTAATTCAAA
1 TCAAACTTTATCATTAAGATATAACCACTAAAAAGATGTAATTCAAA
8721295 CTGTAATACT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.32
Consensus pattern (47 bp):
TCAAACTTTATCATTAAGATATAACCACTAAAAAGATGTAATTCAAA
Found at i:8721956 original size:35 final size:35
Alignment explanation
Indices: 8721917--8722009 Score: 125
Period size: 35 Copynumber: 2.7 Consensus size: 35
8721907 ATGATGATGT
* * *
8721917 AAATGTCTTTTCTTACAATGATGTACCT-ATAATAC
1 AAATGTCTTTTCTTAAAATGATGCACATGA-AATAC
*
8721952 AAATGTCTTTTCTTAAAATGATGCACATGAAATGC
1 AAATGTCTTTTCTTAAAATGATGCACATGAAATAC
*
8721987 AAATGTTTTTTCTTAAAATGATG
1 AAATGTCTTTTCTTAAAATGATG
8722010 AAAATGATGC
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
35 51 0.98
36 1 0.02
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (35 bp):
AAATGTCTTTTCTTAAAATGATGCACATGAAATAC
Found at i:8722049 original size:44 final size:44
Alignment explanation
Indices: 8721966--8722050 Score: 134
Period size: 44 Copynumber: 1.9 Consensus size: 44
8721956 GTCTTTTCTT
* **
8721966 AAAATGATGCACATGAAATGCAAATGTTTTTTCTTAAAATGATG
1 AAAATGATGCACATGAAATGCAAATGTCTTTTCCAAAAATGATG
*
8722010 AAAATGATGCATATGAAATGCAAATGTCTTTTCCAAAAATG
1 AAAATGATGCACATGAAATGCAAATGTCTTTTCCAAAAATG
8722051 TCAATGTATA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.42, C:0.11, G:0.15, T:0.32
Consensus pattern (44 bp):
AAAATGATGCACATGAAATGCAAATGTCTTTTCCAAAAATGATG
Found at i:8723645 original size:9 final size:9
Alignment explanation
Indices: 8723631--8723661 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
8723621 CCATCAATAT
8723631 TTTTTTTTA
1 TTTTTTTTA
*
8723640 TTTTTTTTC
1 TTTTTTTTA
8723649 TTTTTTTTA
1 TTTTTTTTA
8723658 TTTT
1 TTTT
8723662 CACAGCTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.06, C:0.03, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:8727031 original size:18 final size:18
Alignment explanation
Indices: 8727010--8727045 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
8727000 TTTTCTTTCT
8727010 TTTTTTATTTG-TTTTTTA
1 TTTTTTA-TTGATTTTTTA
8727028 TTTTTTATTGATTTTTTA
1 TTTTTTATTGATTTTTTA
8727046 AAAGGAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.18
18 14 0.82
ACGTcount: A:0.14, C:0.00, G:0.06, T:0.81
Consensus pattern (18 bp):
TTTTTTATTGATTTTTTA
Found at i:8729614 original size:12 final size:13
Alignment explanation
Indices: 8729587--8729617 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
8729577 CCTAATTTTT
8729587 AAAAAAAGTTACAA
1 AAAAAAAGTTA-AA
8729601 AAAAAAAGTTAAA
1 AAAAAAAGTTAAA
8729614 AAAA
1 AAAA
8729618 TTTTATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.77, C:0.03, G:0.06, T:0.13
Consensus pattern (13 bp):
AAAAAAAGTTAAA
Found at i:8731978 original size:71 final size:69
Alignment explanation
Indices: 8731881--8732020 Score: 226
Period size: 71 Copynumber: 2.0 Consensus size: 69
8731871 ATATAAGTCT
*
8731881 TATCATCCATAAATCAAGATTATTTATGCATCGAATTGTAAAAACCCTAATTTTAATTTAACCAA
1 TATCATCCATAAATCAAGATGATTTATGCATCGAATTGTAAAAACCCTAATTTTAATTTAACCAA
8731946 ATCA
66 ATCA
* * *
8731950 TATCATCCATAAATCAAAAGATGATTTATGCATCGAATTGTAAAACCCCTAATTTTGATTTATCC
1 TATCATCCATAAATC--AAGATGATTTATGCATCGAATTGTAAAAACCCTAATTTTAATTTAACC
8732015 AAATCA
64 AAATCA
8732021 CACAAAAAAA
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
69 15 0.23
71 50 0.77
ACGTcount: A:0.41, C:0.18, G:0.07, T:0.34
Consensus pattern (69 bp):
TATCATCCATAAATCAAGATGATTTATGCATCGAATTGTAAAAACCCTAATTTTAATTTAACCAA
ATCA
Found at i:8733035 original size:160 final size:156
Alignment explanation
Indices: 8732572--8733043 Score: 626
Period size: 157 Copynumber: 3.0 Consensus size: 156
8732562 CATACTTCAC
** * **
8732572 CAGCAATCTATCAAAGATTTTTCATAATTTTAACGATAACAAATCCATCAATATTTATAATATCC
1 CAGCAATCTAT-AAACTTTTTTCAT--TTTTAACCATAACAAATTTATCAATATTTATAATATCC
* * * * * **
8732637 GTACAAATTTATCAGC-TCAAAACTCAACCCTATCCTTATTCCTAAAAATTCAAATAGAAACTCA
63 ATACAAATTCATCAGCTTCAAAAGTCAAGCCTACCCTTATTTATAAAAATTCAAATAGAAACTCA
8732701 TATAAATTCATAAGAATTCATGATTTTAA
128 TATAAATTCATAAGAATTCATGATTTTAA
* *
8732730 CAGCAATCTATTAAACTTTTTTCA--TTTAACCATAACAAATTTATCAATATTTTATACTATTCA
1 CAGCAATCTA-TAAACTTTTTTCATTTTTAACCATAACAAATTTATCAATA-TTTATAATATCCA
* *
8732793 AACAAATTCATCAGCTTCTAAAAGTCGAGCCTACCCTTATTTATAAAAATTCAAATAGAAACTCA
64 TACAAATTCATCAGCTTC-AAAAGTCAAGCCTACCCTTATTTATAAAAATTCAAATAGAAACTCA
*
8732858 GATAAATTCATAAGAATTCATGATTTTAA
128 TATAAATTCATAAGAATTCATGATTTTAA
8732887 CAGCAATCTACTAAACTTTTTTCATGGTTTTAACCATAACAAATTTATCAATATTTATAATATCC
1 CAGCAATCTA-TAAACTTTTTTCAT--TTTTAACCATAACAAATTTATCAATATTTATAATATCC
* * * *
8732952 ATACAAATTCATCAGCATTGAAAAGTCAAGCCTACCCTTATTTATAAAAGTTCAACTAGAAACCC
63 ATACAAATTCATCAGC-TTCAAAAGTCAAGCCTACCCTTATTTATAAAAATTCAAATAGAAACTC
* *
8733017 ATATACATTCACAAGAATTCATGATTT
127 ATATAAATTCATAAGAATTCATGATTT
8733044 CTATTTCAAA
Statistics
Matches: 276, Mismatches: 29, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
154 22 0.08
155 23 0.08
156 2 0.01
157 91 0.33
158 20 0.07
159 1 0.00
160 90 0.33
161 27 0.10
ACGTcount: A:0.41, C:0.19, G:0.06, T:0.34
Consensus pattern (156 bp):
CAGCAATCTATAAACTTTTTTCATTTTTAACCATAACAAATTTATCAATATTTATAATATCCATA
CAAATTCATCAGCTTCAAAAGTCAAGCCTACCCTTATTTATAAAAATTCAAATAGAAACTCATAT
AAATTCATAAGAATTCATGATTTTAA
Found at i:8733584 original size:191 final size:186
Alignment explanation
Indices: 8733265--8733664 Score: 656
Period size: 191 Copynumber: 2.1 Consensus size: 186
8733255 TCATAACATT
* * * *
8733265 TATAAGAGAAGTCATTTGTTCTTCTGAAGTTAGCAACAGAGAAAGTTTCTGATATTTCACCTTGA
1 TATAAGAGAAGTCATTTGTTCTTCTGAAGCTAGCAACACAGAAAATCTCTGATATTTCACCTTGA
* *
8733330 TTAGATGAAGCATCATCCATAAAAATATATTCTGTTTCATCATCAGAAGTATTTGTGCTTTGCAA
66 TTAGATGAAGCATCATCCATAAAAATAAATTCTGCTTCATCATCAGAAGTATTTGTGCTTTGCAA
*
8733395 TTTGGTGCAATATGAGCTTCTTCTTCACAAATTATAACTCCACCATACCTGTCATA
131 GTTGGTGCAATATGAGCTTCTTCTTCACAAATTATAACTCCACCATACCTGTCATA
8733451 TATAAGAGAAGTCATTTGTTCTTCTGATGCTGAGCTAGCAACACAGAAAATCTCTGATATTTCAC
1 TATAAGAGAAGTCATTTGTTCTTCTGA-----AGCTAGCAACACAGAAAATCTCTGATATTTCAC
* * *
8733516 CTTGATTAGATGAAGTATCATTCATAAAAATAAATTCTGCTTCATCATCAGAAGTATTTGTTCTT
61 CTTGATTAGATGAAGCATCATCCATAAAAATAAATTCTGCTTCATCATCAGAAGTATTTGTGCTT
8733581 TGCAAGTTGGTGCAATATGAGCTTCTTCTTCACAAATTATAACTCCACCATACCTGTCATA
126 TGCAAGTTGGTGCAATATGAGCTTCTTCTTCACAAATTATAACTCCACCATACCTGTCATA
*
8733642 TTTAAGAGAAGTCATTTGTTCTT
1 TATAAGAGAAGTCATTTGTTCTT
8733665 TCCCTTAATA
Statistics
Matches: 198, Mismatches: 11, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
186 27 0.14
191 171 0.86
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (186 bp):
TATAAGAGAAGTCATTTGTTCTTCTGAAGCTAGCAACACAGAAAATCTCTGATATTTCACCTTGA
TTAGATGAAGCATCATCCATAAAAATAAATTCTGCTTCATCATCAGAAGTATTTGTGCTTTGCAA
GTTGGTGCAATATGAGCTTCTTCTTCACAAATTATAACTCCACCATACCTGTCATA
Found at i:8736665 original size:13 final size:11
Alignment explanation
Indices: 8736645--8736694 Score: 55
Period size: 13 Copynumber: 4.2 Consensus size: 11
8736635 TGATAATTTA
8736645 AAATATAATAT
1 AAATATAATAT
8736656 AATGATATAATAT
1 AA--ATATAATAT
*
8736669 AAATATAATAAA
1 AAATATAAT-AT
8736681 AAATATAAATAT
1 AAATAT-AATAT
8736693 AA
1 AA
8736695 CATTATTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
11 9 0.27
12 10 0.30
13 14 0.42
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (11 bp):
AAATATAATAT
Found at i:8736672 original size:24 final size:26
Alignment explanation
Indices: 8736623--8736694 Score: 73
Period size: 24 Copynumber: 2.9 Consensus size: 26
8736613 TATTTTAATA
*
8736623 ATAATATAAATATGATAATTTAAAAT
1 ATAATATAAATATGATAATATAAAAT
8736649 ATAATAT-AATGAT-ATAATAT-AAAT
1 ATAATATAAAT-ATGATAATATAAAAT
*
8736673 ATAATA-AAAAAT-ATAAATATAA
1 ATAATATAAATATGAT-AATATAA
8736695 CATTATTTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
23 4 0.10
24 17 0.43
25 10 0.25
26 9 0.22
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (26 bp):
ATAATATAAATATGATAATATAAAAT
Found at i:8736685 original size:18 final size:18
Alignment explanation
Indices: 8736625--8736694 Score: 70
Period size: 18 Copynumber: 3.7 Consensus size: 18
8736615 TTTTAATAAT
*
8736625 AATATAAATATGATAATTTAA
1 AATATAAATATAATAA---AA
* *
8736646 AATAT-AATATAATGATAT
1 AATATAAATATAAT-AAAA
8736664 AATATAAATATAATAAAA
1 AATATAAATATAATAAAA
8736682 AATATAAATATAA
1 AATATAAATATAA
8736695 CATTATTTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
18 21 0.50
19 8 0.19
20 7 0.17
21 6 0.14
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (18 bp):
AATATAAATATAATAAAA
Found at i:8737562 original size:20 final size:20
Alignment explanation
Indices: 8737482--8737563 Score: 76
Period size: 20 Copynumber: 4.0 Consensus size: 20
8737472 ACAATATGTA
*
8737482 ACCCATCGCACGATAATGGA
1 ACCCATCGCACGATAATGGG
** * *
8737502 AAACATCGCGCGAT-ACGGG
1 ACCCATCGCACGATAATGGG
*
8737521 AAACTCATCGCACGATAATGGG
1 --ACCCATCGCACGATAATGGG
*
8737543 ACCCATCGCGCGATAATGGG
1 ACCCATCGCACGATAATGGG
8737563 A
1 A
8737564 ACCCCACTTG
Statistics
Matches: 48, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
19 3 0.06
20 30 0.62
21 11 0.23
22 4 0.08
ACGTcount: A:0.33, C:0.27, G:0.26, T:0.15
Consensus pattern (20 bp):
ACCCATCGCACGATAATGGG
Found at i:8737876 original size:19 final size:18
Alignment explanation
Indices: 8737852--8737887 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
8737842 TAGAAATTCA
8737852 ATAATTTTTAATTTTTTTT
1 ATAATTTTT-ATTTTTTTT
8737871 ATAATTTTTATTTTTTT
1 ATAATTTTTATTTTTTT
8737888 AATATCCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (18 bp):
ATAATTTTTATTTTTTTT
Found at i:8739348 original size:11 final size:11
Alignment explanation
Indices: 8739334--8739394 Score: 65
Period size: 11 Copynumber: 5.5 Consensus size: 11
8739324 AATAATCTTC
*
8739334 ATATAAATATG
1 ATATAAATATA
8739345 ATATAAA-A-A
1 ATATAAATATA
8739354 ATAT-AATATA
1 ATATAAATATA
8739364 ATAATATAATATAA
1 AT-ATA-AATAT-A
8739378 ATATAAATATA
1 ATATAAATATA
8739389 ATATAA
1 ATATAA
8739395 TTTAAAATTT
Statistics
Matches: 43, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
8 2 0.05
9 5 0.12
10 4 0.09
11 16 0.37
12 5 0.12
13 8 0.19
14 3 0.07
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (11 bp):
ATATAAATATA
Found at i:8739361 original size:5 final size:5
Alignment explanation
Indices: 8739334--8739395 Score: 58
Period size: 5 Copynumber: 12.4 Consensus size: 5
8739324 AATAATCTTC
* *
8739334 ATATAA ATATG ATATA A-AAA ATATA ATAT- A-ATA ATATA ATATAA ATATAA
1 ATAT-A ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATAT-A ATAT-A
8739384 ATATA ATATA AT
1 ATATA ATATA AT
8739396 TTAAAATTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
3 2 0.04
4 5 0.10
5 26 0.54
6 15 0.31
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (5 bp):
ATATA
Found at i:8739370 original size:22 final size:22
Alignment explanation
Indices: 8739334--8739400 Score: 84
Period size: 22 Copynumber: 3.0 Consensus size: 22
8739324 AATAATCTTC
*
8739334 ATATAAATATGATATAA-A-AA
1 ATATAAATATAATATAATATAA
8739354 ATATAATATAATAATATAATATAA
1 ATATAA-AT-ATAATATAATATAA
*
8739378 ATATAAATATAATATAATTTAA
1 ATATAAATATAATATAATATAA
8739400 A
1 A
8739401 ATTTTAATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
20 6 0.15
21 2 0.05
22 22 0.54
23 3 0.07
24 8 0.20
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (22 bp):
ATATAAATATAATATAATATAA
Found at i:8739402 original size:17 final size:17
Alignment explanation
Indices: 8739353--8739402 Score: 66
Period size: 17 Copynumber: 2.9 Consensus size: 17
8739343 TGATATAAAA
8739353 AATATAATATAATAATAT
1 AATATAATATAA-AATAT
8739371 AATATAA-ATATAAATAT
1 AATATAATATA-AAATAT
*
8739388 AATATAATTTAAAAT
1 AATATAATATAAAAT
8739403 TTTAATAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 19 0.66
18 10 0.34
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
AATATAATATAAAATAT
Found at i:8739442 original size:23 final size:23
Alignment explanation
Indices: 8739390--8739442 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
8739380 ATAAATATAA
* *
8739390 TATAATTTA-AAATTTTAATAAT
1 TATAATATATAAATTTTAAAAAT
*
8739412 TATTATATATAAATTTTAAAAAAT
1 TATAATATATAAATTTT-AAAAAT
8739436 TA-AATAT
1 TATAATAT
8739443 TTTATTTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 7 0.28
23 11 0.44
24 7 0.28
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
TATAATATATAAATTTTAAAAAT
Found at i:8739529 original size:2 final size:2
Alignment explanation
Indices: 8739507--8739550 Score: 65
Period size: 2 Copynumber: 23.0 Consensus size: 2
8739497 TTTAATATTT
*
8739507 TA TA T- TA TA TA AA TA TA -A TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8739547 TA TA
1 TA TA
8739551 GTGTGGTCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
1 2 0.05
2 36 0.95
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:8740290 original size:10 final size:11
Alignment explanation
Indices: 8740275--8740311 Score: 51
Period size: 10 Copynumber: 3.5 Consensus size: 11
8740265 ATTCATAACA
8740275 TTAAAATTT-T
1 TTAAAATTTAT
8740285 TTAAAATTTAT
1 TTAAAATTTAT
*
8740296 TT-TAATTTAT
1 TTAAAATTTAT
8740306 TTAAAA
1 TTAAAA
8740312 AATAAATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
10 18 0.78
11 5 0.22
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
TTAAAATTTAT
Found at i:8740899 original size:15 final size:16
Alignment explanation
Indices: 8740871--8740904 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
8740861 TCATCTTAAA
8740871 ATTATAATTATTTTAT
1 ATTATAATTATTTTAT
*
8740887 ATTATAA-TATTTTGT
1 ATTATAATTATTTTAT
8740902 ATT
1 ATT
8740905 TTCAAATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
ATTATAATTATTTTAT
Found at i:8743705 original size:21 final size:21
Alignment explanation
Indices: 8743681--8743740 Score: 52
Period size: 21 Copynumber: 2.8 Consensus size: 21
8743671 TTCATATAGA
8743681 TAAAATATATGTACATTTAAT-
1 TAAAATATATGTACATTT-ATC
* *
8743702 T-AAATAATATGTATAATTATC
1 TAAAAT-ATATGTACATTTATC
*
8743723 TAAACACATATGTACATT
1 TAAA-ATATATGTACATT
8743741 AGAGGTCATA
Statistics
Matches: 30, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
20 6 0.20
21 12 0.40
22 11 0.37
23 1 0.03
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.40
Consensus pattern (21 bp):
TAAAATATATGTACATTTATC
Found at i:8745527 original size:29 final size:30
Alignment explanation
Indices: 8745482--8745547 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
8745472 AATCAATTTG
*
8745482 ATAAAAATAAATATTTAAAAATTTAATTAA
1 ATAAAAATAAATATTTAAAAATTTAATAAA
* * **
8745512 CTAAAAAT-AATGTTTACCAATTTAATAAA
1 ATAAAAATAAATATTTAAAAATTTAATAAA
8745541 ATAAAAA
1 ATAAAAA
8745548 ATTATTAATT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 23 0.77
30 7 0.23
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.33
Consensus pattern (30 bp):
ATAAAAATAAATATTTAAAAATTTAATAAA
Found at i:8745592 original size:35 final size:32
Alignment explanation
Indices: 8745530--8745601 Score: 76
Period size: 35 Copynumber: 2.2 Consensus size: 32
8745520 AATGTTTACC
*
8745530 AATTTAATAAAATAAAAAATTATTAATT-TATT
1 AATTTAATAAAATAAAAAATTAATAATTAT-TT
8745562 AATTGTAAT-AAATAATAAAATTTAAATAATTATTT
1 AATT-TAATAAAATAA-AAAA-TT-AATAATTATTT
8745597 AATTT
1 AATTT
8745602 TTATTAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
32 10 0.29
33 8 0.24
34 3 0.09
35 12 0.35
36 1 0.03
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (32 bp):
AATTTAATAAAATAAAAAATTAATAATTATTT
Found at i:8746673 original size:14 final size:14
Alignment explanation
Indices: 8746654--8746686 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
8746644 CGTAACATGA
8746654 TTTTTAAATTTGAT
1 TTTTTAAATTTGAT
8746668 TTTTTAAATTTGAT
1 TTTTTAAATTTGAT
8746682 TTTTT
1 TTTTT
8746687 GAAGTATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.70
Consensus pattern (14 bp):
TTTTTAAATTTGAT
Found at i:8754018 original size:20 final size:21
Alignment explanation
Indices: 8753995--8754033 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
8753985 GAAATAAAGG
*
8753995 TAAAATTATAAAAG-TATTGT
1 TAAAATTAGAAAAGCTATTGT
*
8754015 TAAATTTAGAAAAGCTATT
1 TAAAATTAGAAAAGCTATT
8754034 CGCCGAGTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.49, C:0.03, G:0.10, T:0.38
Consensus pattern (21 bp):
TAAAATTAGAAAAGCTATTGT
Found at i:8755417 original size:28 final size:29
Alignment explanation
Indices: 8755386--8755441 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
8755376 ATGATTTCAA
*
8755386 TTTATTATTAAAATATTT-AAAATATTAT
1 TTTAATATTAAAATATTTAAAAATATTAT
**
8755414 TTTAATATTTTAATATTTCAAAAATATT
1 TTTAATATTAAAATATTT-AAAAATATT
8755442 CTAAAATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 15 0.65
30 8 0.35
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (29 bp):
TTTAATATTAAAATATTTAAAAATATTAT
Found at i:8762222 original size:23 final size:23
Alignment explanation
Indices: 8762192--8762239 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
8762182 GAAAGATTGA
8762192 TCCATAAATAATTTCTACCTTAT
1 TCCATAAATAATTTCTACCTTAT
8762215 TCCATAAATAATTTCTACCTTAT
1 TCCATAAATAATTTCTACCTTAT
8762238 TC
1 TC
8762240 AAAAAATTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.44
Consensus pattern (23 bp):
TCCATAAATAATTTCTACCTTAT
Found at i:8762246 original size:23 final size:23
Alignment explanation
Indices: 8762197--8762246 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
8762187 ATTGATCCAT
* *
8762197 AAATAATTTCTACCTTATTCCAT
1 AAATAATTTCTACCTTATTCAAA
8762220 AAATAATTTCTACCTTATTCAAA
1 AAATAATTTCTACCTTATTCAAA
8762243 AAAT
1 AAAT
8762247 TCAGGAAGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.40
Consensus pattern (23 bp):
AAATAATTTCTACCTTATTCAAA
Found at i:8765102 original size:18 final size:18
Alignment explanation
Indices: 8765079--8765115 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
8765069 AATTTTTAAT
*
8765079 TATTTATTTAATTATATA
1 TATTTATATAATTATATA
8765097 TATTTATATAATTATATA
1 TATTTATATAATTATATA
8765115 T
1 T
8765116 TTAAATATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TATTTATATAATTATATA
Found at i:8765104 original size:8 final size:8
Alignment explanation
Indices: 8765079--8765133 Score: 58
Period size: 8 Copynumber: 6.8 Consensus size: 8
8765069 AATTTTTAAT
*
8765079 TATTTATT
1 TATTTATA
8765087 TAATTATATA
1 T-ATT-TATA
8765097 TATTTATA
1 TATTTATA
*
8765105 TAATTATA
1 TATTTATA
*
8765113 TATTTAAA
1 TATTTATA
8765121 TATTTATA
1 TATTTATA
8765129 T-TTTA
1 TATTTA
8765134 AAAATAATAT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
7 4 0.10
8 26 0.65
9 6 0.15
10 4 0.10
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
TATTTATA
Found at i:8765109 original size:30 final size:30
Alignment explanation
Indices: 8765075--8765131 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
8765065 AATTAATTTT
* *
8765075 TAATTATTTATTTAATTATATATATTTATA
1 TAATTATATATTTAAATATATATATTTATA
*
8765105 TAATTATATATTTAAATATTTATATTT
1 TAATTATATATTTAAATATATATATTT
8765132 TAAAAATAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (30 bp):
TAATTATATATTTAAATATATATATTTATA
Found at i:8765114 original size:16 final size:15
Alignment explanation
Indices: 8765075--8765147 Score: 62
Period size: 14 Copynumber: 4.9 Consensus size: 15
8765065 AATTAATTTT
*
8765075 TAATTATTTATTTAA
1 TAATTATATATTTAA
*
8765090 TTA-TATATATTTATA
1 TAATTATATATTTA-A
8765105 TAATTATATATTTAAA
1 TAATTATATATTT-AA
*
8765121 TATTTATAT-TTTAA
1 TAATTATATATTTAA
* *
8765135 AAATAATAT-TTTA
1 TAATTATATATTTA
8765148 TATTTTAAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
14 21 0.44
15 8 0.17
16 18 0.38
17 1 0.02
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TAATTATATATTTAA
Found at i:8765123 original size:18 final size:18
Alignment explanation
Indices: 8765087--8765141 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
8765077 ATTATTTATT
*
8765087 TAATTATATATATT-TATA
1 TAATTATATAT-TTAAATA
8765105 TAATTATATATTTAAATA
1 TAATTATATATTTAAATA
*
8765123 T--TTATAT-TTTAAAAA
1 TAATTATATATTTAAATA
8765138 TAAT
1 TAAT
8765142 ATTTTATATT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
15 8 0.25
16 6 0.19
17 3 0.09
18 15 0.47
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TAATTATATATTTAAATA
Found at i:8765149 original size:21 final size:21
Alignment explanation
Indices: 8765119--8765169 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
8765109 TATATATTTA
8765119 AATA-TTTATATTTTAAAAAT
1 AATATTTTATATTTTAAAAAT
8765139 AATATTTTATATTTTAAAAAT
1 AATATTTTATATTTTAAAAAT
8765160 AATATTTTAT
1 AATATTTTAT
8765170 TAATTTCAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 4 0.13
21 26 0.87
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
AATATTTTATATTTTAAAAAT
Found at i:8776656 original size:32 final size:31
Alignment explanation
Indices: 8776620--8776698 Score: 81
Period size: 32 Copynumber: 2.5 Consensus size: 31
8776610 TTTTAAATTT
*
8776620 TAAATTTTTATTTTTTATATATT-ATTTTAATA
1 TAAATTTTTATTTTTTA-A-ATTGATTTTAAAA
*
8776652 TAAA-TTTTAGTATATTTAAATTGATTTTAAAA
1 TAAATTTTTA-T-TTTTTAAATTGATTTTAAAA
8776684 TAAATTTTTTATTTT
1 TAAA-TTTTTATTTT
8776699 ATTTTATAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
31 8 0.21
32 20 0.51
33 6 0.15
34 5 0.13
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (31 bp):
TAAATTTTTATTTTTTAAATTGATTTTAAAA
Found at i:8778130 original size:19 final size:20
Alignment explanation
Indices: 8778095--8778140 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
8778085 ATAAATATAC
* *
8778095 ACAAATTAAAATTTAAACGA
1 ACAAATTAAAATATAAACAA
*
8778115 ACAAATT-AAATATAAATAA
1 ACAAATTAAAATATAAACAA
8778134 ACAAATT
1 ACAAATT
8778141 TAACAACAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.63, C:0.09, G:0.02, T:0.26
Consensus pattern (20 bp):
ACAAATTAAAATATAAACAA
Found at i:8778143 original size:20 final size:20
Alignment explanation
Indices: 8778085--8778143 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 20
8778075 TTTATAATCA
*
8778085 ATAAATATACACAAATTAAAAT
1 ATAAATA-A-ACAAATTTAAAT
* **
8778107 TTAAACGAACAAA-TTAAAT
1 ATAAATAAACAAATTTAAAT
8778126 ATAAATAAACAAATTTAA
1 ATAAATAAACAAATTTAA
8778144 CAACAATAAA
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
19 15 0.52
20 9 0.31
21 1 0.03
22 4 0.14
ACGTcount: A:0.63, C:0.08, G:0.02, T:0.27
Consensus pattern (20 bp):
ATAAATAAACAAATTTAAAT
Found at i:8783799 original size:2 final size:2
Alignment explanation
Indices: 8783792--8783821 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
8783782 GCAACAAACT
*
8783792 TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8783822 CACACACACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8784550 original size:20 final size:20
Alignment explanation
Indices: 8784527--8784566 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
8784517 AAAAAATAGT
8784527 AAATAGGTTTCTTTTAGTGA
1 AAATAGGTTTCTTTTAGTGA
*
8784547 AAATAGGTTTTTTTTAGTGA
1 AAATAGGTTTCTTTTAGTGA
8784567 TCATATGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.03, G:0.20, T:0.47
Consensus pattern (20 bp):
AAATAGGTTTCTTTTAGTGA
Found at i:8786226 original size:66 final size:65
Alignment explanation
Indices: 8786150--8786284 Score: 175
Period size: 66 Copynumber: 2.1 Consensus size: 65
8786140 AATAAACCAA
* * *
8786150 ACATAATATAAGATAATTATCAT-TTCATCTTATCCATCATCC-TATGCATTAAACATGATATAA
1 ACATAATATAAGATAATTATCATCTT-ATCCTATCCATCA-CCTTATGCATCAAACATGACATAA
8786213 AT
64 AT
* * *
8786215 ACATCAATATAAGATAGTTATCATCTTATCCTATCTATCACCTTATGCATCAAACATGACATAAG
1 ACAT-AATATAAGATAATTATCATCTTATCCTATCCATCACCTTATGCATCAAACATGACATAAA
8786280 T
65 T
8786281 ACAT
1 ACAT
8786285 TCATTCATAA
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
65 6 0.10
66 53 0.87
67 2 0.03
ACGTcount: A:0.40, C:0.19, G:0.06, T:0.35
Consensus pattern (65 bp):
ACATAATATAAGATAATTATCATCTTATCCTATCCATCACCTTATGCATCAAACATGACATAAAT
Found at i:8786457 original size:21 final size:21
Alignment explanation
Indices: 8786431--8786472 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
8786421 AAACGAAGAC
*
8786431 GAAGTACATTTATTTATAATT
1 GAAGTACAATTATTTATAATT
8786452 GAAGTACAATTATTTATAATT
1 GAAGTACAATTATTTATAATT
8786473 AATTGAGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (21 bp):
GAAGTACAATTATTTATAATT
Found at i:8786517 original size:16 final size:17
Alignment explanation
Indices: 8786480--8786522 Score: 61
Period size: 16 Copynumber: 2.6 Consensus size: 17
8786470 ATTAATTGAG
*
8786480 TTTATGAATACCATAGA
1 TTTATGAATACCATAAA
*
8786497 TTTATAAATACC-TAAA
1 TTTATGAATACCATAAA
8786513 TTTATGAATA
1 TTTATGAATA
8786523 ATTAAAATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 12 0.52
17 11 0.48
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (17 bp):
TTTATGAATACCATAAA
Found at i:8790213 original size:2 final size:2
Alignment explanation
Indices: 8790206--8790241 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
8790196 TGTTCTACTT
8790206 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8790242 AAGCTTTAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8795273 original size:6 final size:6
Alignment explanation
Indices: 8795264--8795335 Score: 67
Period size: 6 Copynumber: 11.5 Consensus size: 6
8795254 TTTTTTATAA
*
8795264 AATTAT AATTAT AATTAT AAATTAT AAATTAT AATT-T -TTTAT AAAATTAT
1 AATTAT AATTAT AATTAT -AATTAT -AATTAT AATTAT AATTAT --AATTAT
*
8795314 AATTAT AAATTAT AATCAT AAT
1 AATTAT -AATTAT AATTAT AAT
8795336 AAAATATTAC
Statistics
Matches: 57, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
4 2 0.04
5 2 0.04
6 30 0.53
7 19 0.33
8 4 0.07
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (6 bp):
AATTAT
Found at i:8801062 original size:2 final size:2
Alignment explanation
Indices: 8801055--8801081 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8801045 GCAACAAACT
8801055 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8801082 GTATGTATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8801837 original size:20 final size:20
Alignment explanation
Indices: 8801812--8801851 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
8801802 AAAAAATAGT
8801812 AAATAGGTTTCTTTTAGTGA
1 AAATAGGTTTCTTTTAGTGA
*
8801832 AAATAGGTTTTTTTTAGTGA
1 AAATAGGTTTCTTTTAGTGA
8801852 TCATATGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.03, G:0.20, T:0.47
Consensus pattern (20 bp):
AAATAGGTTTCTTTTAGTGA
Found at i:8803516 original size:64 final size:65
Alignment explanation
Indices: 8803447--8803569 Score: 169
Period size: 65 Copynumber: 1.9 Consensus size: 65
8803437 AACCAAATAT
* * *
8803447 AATATAAGATAATTATCAT-TCATCTTATCCATCATCC-TATGCATTAAACATGATATAAAACAT
1 AATATAAGATAATTATCATCTCATCCTATCCATCA-CCTTATGCATCAAACATGACATAAAACAT
8803510 C
65 C
* * *
8803511 AATATAAGATAGTTATCATCTTATCCTATCTATCACCTTATGCATCAAACATGACATAA
1 AATATAAGATAATTATCATCTCATCCTATCCATCACCTTATGCATCAAACATGACATAA
8803570 GTACATTCAT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
64 20 0.39
65 31 0.61
ACGTcount: A:0.41, C:0.20, G:0.06, T:0.34
Consensus pattern (65 bp):
AATATAAGATAATTATCATCTCATCCTATCCATCACCTTATGCATCAAACATGACATAAAACATC
Found at i:8803747 original size:21 final size:21
Alignment explanation
Indices: 8803721--8803762 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
8803711 AAAAGAAGAC
*
8803721 GAAGTACATTTATTTATAATT
1 GAAGTACAATTATTTATAATT
8803742 GAAGTACAATTATTTATAATT
1 GAAGTACAATTATTTATAATT
8803763 AATTGAGCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (21 bp):
GAAGTACAATTATTTATAATT
Found at i:8807507 original size:2 final size:2
Alignment explanation
Indices: 8807500--8807533 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8807490 TGTTCTACTT
8807500 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8807534 AGCTTTAGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8809073 original size:2 final size:2
Alignment explanation
Indices: 8809068--8809098 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
8809058 AACATGTGTG
*
8809068 TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8809099 TGCATTATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:8809694 original size:24 final size:23
Alignment explanation
Indices: 8809628--8809714 Score: 77
Period size: 24 Copynumber: 3.6 Consensus size: 23
8809618 AAAAAATTAT
8809628 AAAATATAATTTTGAAATA-TAAA
1 AAAATATAATTTT-AAATATTAAA
* * *
8809651 ATAATAAGAATTTTAGATATTAAA
1 AAAAT-ATAATTTTAAATATTAAA
8809675 AAAATATAATTTTAAAATATTTCAAA
1 AAAATATAATTTT-AAATA-TT-AAA
*
8809701 AAAATTAAAATTTT
1 AAAA-TATAATTTT
8809715 GAGACGAAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
23 15 0.29
24 19 0.37
25 2 0.04
26 7 0.14
27 8 0.16
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.38
Consensus pattern (23 bp):
AAAATATAATTTTAAATATTAAA
Found at i:8809886 original size:2 final size:2
Alignment explanation
Indices: 8809879--8809917 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
8809869 ATTGTAACCC
8809879 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8809918 TGGTTTCAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8810798 original size:3 final size:3
Alignment explanation
Indices: 8810778--8810813 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
8810768 TATTTGAATA
* *
8810778 AAT ATT AAT AAA AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8810814 TTTTAAAGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8812203 original size:2 final size:2
Alignment explanation
Indices: 8812196--8812226 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8812186 TAAATCAAAG
8812196 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8812227 GAGAGAGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8812455 original size:2 final size:2
Alignment explanation
Indices: 8812448--8812489 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
8812438 TCCCTCTTCC
8812448 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8812489 T
1 T
8812490 GACAAGGGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8812923 original size:2 final size:2
Alignment explanation
Indices: 8812918--8812945 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8812908 TGTGTGTGTG
8812918 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8812946 CATGTGTGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8816071 original size:2 final size:2
Alignment explanation
Indices: 8816060--8816092 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
8816050 AATGTCCACC
*
8816060 TA TA -A TA TA TA TA TA TA TA TA TA TC TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8816093 AAAGATCGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:8818551 original size:2 final size:2
Alignment explanation
Indices: 8818544--8818573 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8818534 TGTTGTAATA
8818544 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8818574 TAGAATAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8819156 original size:2 final size:2
Alignment explanation
Indices: 8819141--8819174 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
8819131 ATATGTTGTA
8819141 AT AT A- AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8819175 TAGATTTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 28 0.93
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8820269 original size:320 final size:320
Alignment explanation
Indices: 8819687--8820327 Score: 1264
Period size: 320 Copynumber: 2.0 Consensus size: 320
8819677 AGTCATCATC
*
8819687 AATCTTTTTTAAGGTGTGATTGGTCACCTAAAAATTTATCTTTTTAACAAAATTATAAAAACGAG
1 AATCTTTTTTAAGGTGTGATTGGTCACCCAAAAATTTATCTTTTTAACAAAATTATAAAAACGAG
8819752 TTTAAAGTTTATCAAAAAGATACATTTCTATCTACAAAAAATTAGGTTAGACTTTGGAATCGATT
66 TTTAAAGTTTATCAAAAAGATACATTTCTATCTACAAAAAATTAGGTTAGACTTTGGAATCGATT
8819817 ACGTGTGGGGAAGGATTCGCACCCCCGCAACGCCCATAAATTAGTATAATTTAATTATACGCTAT
131 ACGTGTGGGGAAGGATTCGCACCCCCGCAACGCCCATAAATTAGTATAATTTAATTATACGCTAT
8819882 TTTCGGTGTTGGATAAAAATAGTTTTGACTTGAAATTTAATAGTAATTTCCTTCATTTGAAAAAA
196 TTTCGGTGTTGGATAAAAATAGTTTTGACTTGAAATTTAATAGTAATTTCCTTCATTTGAAAAAA
8819947 TAAAATTTTGCTAAAACTCTTTATTTAGGAATATCGAAAAAATCTTAAAGTTAAAGAATT
261 TAAAATTTTGCTAAAACTCTTTATTTAGGAATATCGAAAAAATCTTAAAGTTAAAGAATT
8820007 AATCTTTTTTAAGGTGTGATTGGTCACCCAAAAATTTATCTTTTTAACAAAATTATAAAAACGAG
1 AATCTTTTTTAAGGTGTGATTGGTCACCCAAAAATTTATCTTTTTAACAAAATTATAAAAACGAG
8820072 TTTAAAGTTTATCAAAAAGATACATTTCTATCTACAAAAAATTAGGTTAGACTTTGGAATCGATT
66 TTTAAAGTTTATCAAAAAGATACATTTCTATCTACAAAAAATTAGGTTAGACTTTGGAATCGATT
*
8820137 ACGTGTGGGGAAGGATTCGCACCCCCGCAACGCCCATAAATTGGTATAATTTAATTATACGCTAT
131 ACGTGTGGGGAAGGATTCGCACCCCCGCAACGCCCATAAATTAGTATAATTTAATTATACGCTAT
8820202 TTTCGGTGTTGGATAAAAATAGTTTTGACTTGAAATTTAATAGTAATTTCCTTCATTTGAAAAAA
196 TTTCGGTGTTGGATAAAAATAGTTTTGACTTGAAATTTAATAGTAATTTCCTTCATTTGAAAAAA
8820267 TAAAATTTTGCTAAAACTCTTTATTTAGGAATATCGAAAAAATCTTAAAGTTAAAGAATT
261 TAAAATTTTGCTAAAACTCTTTATTTAGGAATATCGAAAAAATCTTAAAGTTAAAGAATT
8820327 A
1 A
8820328 TTTTAAAATT
Statistics
Matches: 319, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
320 319 1.00
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (320 bp):
AATCTTTTTTAAGGTGTGATTGGTCACCCAAAAATTTATCTTTTTAACAAAATTATAAAAACGAG
TTTAAAGTTTATCAAAAAGATACATTTCTATCTACAAAAAATTAGGTTAGACTTTGGAATCGATT
ACGTGTGGGGAAGGATTCGCACCCCCGCAACGCCCATAAATTAGTATAATTTAATTATACGCTAT
TTTCGGTGTTGGATAAAAATAGTTTTGACTTGAAATTTAATAGTAATTTCCTTCATTTGAAAAAA
TAAAATTTTGCTAAAACTCTTTATTTAGGAATATCGAAAAAATCTTAAAGTTAAAGAATT
Found at i:8821460 original size:14 final size:13
Alignment explanation
Indices: 8821435--8821459 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8821425 AATATATAAA
8821435 AAAATTAAAAAAC
1 AAAATTAAAAAAC
8821448 AAAATTAAAAAA
1 AAAATTAAAAAA
8821460 ATCTGTCAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAATTAAAAAAC
Found at i:8822493 original size:15 final size:15
Alignment explanation
Indices: 8822470--8822501 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8822460 ATATTATTTT
8822470 TTAAATAATTTTTAA
1 TTAAATAATTTTTAA
*
8822485 TTAATTAATTTTTAA
1 TTAAATAATTTTTAA
8822500 TT
1 TT
8822502 TTAATTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TTAAATAATTTTTAA
Found at i:8823197 original size:21 final size:22
Alignment explanation
Indices: 8823167--8823218 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
8823157 GATATTTTTA
8823167 AATA-TTTATA-TTTAAAAAAT
1 AATATTTTATATTTTAAAAAAT
8823187 AATATTTTATATTTTAAAAAAT
1 AATATTTTATATTTTAAAAAAT
8823209 AATATTTTAT
1 AATATTTTAT
8823219 TAATTTCGGA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 4 0.13
21 6 0.20
22 20 0.67
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
AATATTTTATATTTTAAAAAAT
Found at i:8823401 original size:2 final size:2
Alignment explanation
Indices: 8823388--8823419 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
8823378 CCCTACTTAC
*
8823388 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8823420 TTACAGGAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8824235 original size:2 final size:2
Alignment explanation
Indices: 8824228--8824255 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8824218 AATAAAACAA
8824228 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8824256 GAGTTGATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8825400 original size:18 final size:18
Alignment explanation
Indices: 8825356--8825401 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
8825346 CGCCAAGTTG
8825356 AGAAAAAAAGAAAAAGAA
1 AGAAAAAAAGAAAAAGAA
*
8825374 A-AAATAAAATAAAAAGAA
1 AGAAA-AAAAGAAAAAGAA
8825392 AGAAAAAAAG
1 AGAAAAAAAG
8825402 GAGTATATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 3 0.12
18 18 0.75
19 3 0.12
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.04
Consensus pattern (18 bp):
AGAAAAAAAGAAAAAGAA
Found at i:8827202 original size:9 final size:10
Alignment explanation
Indices: 8827176--8827204 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
8827166 ATCAAATTTT
8827176 TATATTTTAA
1 TATATTTTAA
8827186 TATATTTTAA
1 TATATTTTAA
8827196 T-TATTTTAA
1 TATATTTTAA
8827205 CTAATAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 8 0.42
10 11 0.58
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
TATATTTTAA
Found at i:8830546 original size:26 final size:26
Alignment explanation
Indices: 8830487--8830538 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
8830477 AGATATTGAT
*
8830487 TTCAATTTAAATAATTATCCAAAATA
1 TTCAATTTAAATAATTATCAAAAATA
*
8830513 TTCAATTTAAATAATTAATTAAAAAT
1 TTCAATTTAAATAATT-ATCAAAAAT
8830539 TTTTATTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 16 0.70
27 7 0.30
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (26 bp):
TTCAATTTAAATAATTATCAAAAATA
Found at i:8831119 original size:26 final size:26
Alignment explanation
Indices: 8831083--8831132 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
8831073 AGATATTGAT
8831083 TTCAACTTAAATAA-TTATCTAAAATA
1 TTCAACTTAAATAATTTAT-TAAAATA
*
8831109 TTCAATTTAAATAATTTATTAAAA
1 TTCAACTTAAATAATTTATTAAAA
8831133 AATTTTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (26 bp):
TTCAACTTAAATAATTTATTAAAATA
Found at i:8831463 original size:2 final size:2
Alignment explanation
Indices: 8831456--8831480 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8831446 AATCAAAGAA
8831456 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8831481 GAGAGAGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8831485 original size:2 final size:2
Alignment explanation
Indices: 8831480--8831505 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8831470 ATATATATAT
8831480 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
8831506 GGGATGAGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8831717 original size:2 final size:2
Alignment explanation
Indices: 8831710--8831754 Score: 63
Period size: 2 Copynumber: 22.5 Consensus size: 2
8831700 TCCCTCTTCT
* * *
8831710 TA TA TA TA TT TA TA TT TA TA AA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8831752 TA T
1 TA T
8831755 GACGAGGGAT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:8837157 original size:2 final size:2
Alignment explanation
Indices: 8837144--8837175 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
8837134 CCTTCCTTAC
*
8837144 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8837176 TTACAGGCGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8844358 original size:2 final size:2
Alignment explanation
Indices: 8844351--8844382 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
8844341 TGTTGTAATA
*
8844351 AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8844383 TAGAATAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8844849 original size:26 final size:26
Alignment explanation
Indices: 8844793--8844844 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
8844783 TATTGATTTC
* *
8844793 AATTTAAATAATTATCCAAAATATTA
1 AATTTAAATAATTATCAAAAAAATTA
*
8844819 AATTTAAATAATTTATTAAAAAAATT
1 AATTTAAATAA-TTATCAAAAAAATT
8844845 TATTTGATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (26 bp):
AATTTAAATAATTATCAAAAAAATTA
Found at i:8844957 original size:602 final size:602
Alignment explanation
Indices: 8843835--8844990 Score: 1867
Period size: 602 Copynumber: 1.9 Consensus size: 602
8843825 CAAAAACATA
*
8843835 TTTTTATCACAATTCAAATGTCTCATATTTTCATATAAAGATGTAAGCTTTTATTACTTTAAAAA
1 TTTTTATCACAATTCAAAGGTCTCATATTTTCATATAAAGATGTAAGCTTTTATTACTTTAAAAA
* *
8843900 TACATGCTTTCTAGTTAATAATTTATTAACTTATCTAAAAGTATTAAATTTAAATAATCTATTAA
66 TACATGCTTTCTAGTCAATAATTCATTAACTTATCTAAAAGTATTAAATTTAAATAATCTATTAA
* * *
8843965 AAGATTTTTAATTTTTGATAGATTTTGATTTGAATTTAAATAATTATCTAAAAATTTAAAATTTA
131 AAGAATTTCAATTGTTGATAGATTTTGATTTGAATTTAAATAATTATCTAAAAATTTAAAATTTA
* *
8844030 AATAATTTATTAAATAGAATTATTTCACAGAAAATAAAATTTTATTAAGTATATATATTTGGAAT
196 AATAATTTATTAAATAAAATTATTTCACAAAAAATAAAATTTTATTAAGTATATATATTTGGAAT
* *
8844095 TCCATTAAATTTAAAAAGAAAAGATAAATTATGATTTAATATATTTGAATTCAAATTTTATGCAA
261 GCCATTAAATTTAAAAAGAAAAGATAAATTATGATTTAATATATTTGAATTCAAATCTTATGCAA
* *
8844160 AATTTTCAATCTTAGATAGATATTGATTTCAATTTAAATAATTATCCAAAATATTCAATTTAAAT
326 AAATTTCAATCTTAGATAGATATTGATTTCAATTTAAATAATTATCCAAAATATTAAATTTAAAT
* * *
8844225 AAATAATTAAAAATTTTATTTGATAAATAAAAAATATAAATGTTATCCTATATGTCATTAGAAGA
391 AAATAATTAAAAAATTTATTTGATAAATAAAAAATATAAATATTATCCTATATGTCATTAAAAGA
* * * * * * *
8844290 TATTATCCAATTAGGTATCCACATAAGTAATTTTGATTATGTAGTCTTGCATGTTG-TAATA-AT
456 GATTATCCAATTAAGCATCCACATAAGCAATTTTGATCATATAATCTTGCATGTTGATAATATA-
8844353 ATATATATATACATATATATATATATATATTAGAATAAAACATTATATTTGTTTGTAAAGCAAAA
520 ATATA-ATATACATATATATATATATATATTAGAATAAAACATTATATTTGTTTGTAAAGCAAAA
8844418 ACATATTTTTATCTAACTT
584 ACATATTTTTATCTAACTT
8844437 TTTTTATCA-ACATTCAAAGGTCTCATATTTTCATATAAAGATGTAAGCTTTTATTACTTTAAAA
1 TTTTTATCACA-ATTCAAAGGTCTCATATTTTCATATAAAGATGTAAGCTTTTATTACTTTAAAA
**
8844501 ATACATGCTTTCTAGTCAATAATTCATTAACTTATCTACGAGTATTAAATTTAAATAATCTATTA
65 ATACATGCTTTCTAGTCAATAATTCATTAACTTATCTAAAAGTATTAAATTTAAATAATCTATTA
*
8844566 AATA-AATTTCAATTGTTGATAGATTTTGTTTTGAATTTAAATAATTATCTAAAAATATT-AAAT
130 AA-AGAATTTCAATTGTTGATAGATTTTGATTTGAATTTAAATAATTATCTAAAAAT-TTAAAAT
* *
8844629 TTAAATAATTTATTAAATAAAATTATTTGACAAAAAATAAAATTTTATTGAGTATATATATTTGG
193 TTAAATAATTTATTAAATAAAATTATTTCACAAAAAATAAAATTTTATTAAGTATATATATTTGG
*
8844694 AACTGCCATTAAGTTTAAAAAGAAAAGATAAATTATGATTTAATATATTTGAATTCAAATCTTAT
258 AA-TGCCATTAAATTTAAAAAGAAAAGATAAATTATGATTTAATATATTTGAATTCAAATCTTAT
*
8844759 GCAAAAATTTCAATGTTAGATAGATATTGATTTCAATTTAAATAATTATCCAAAATATTAAATTT
322 GCAAAAATTTCAATCTTAGATAGATATTGATTTCAATTTAAATAATTATCCAAAATATTAAATTT
* * *
8844824 AAATAATTTATTAAAAAAATTTATTTGATAAATAAAATAATATAAATATTATCCTATGTGTCATT
387 AAATAAATAATT-AAAAAATTTATTTGATAAATAAAA-AATATAAATATTATCCTATATGTCATT
* *
8844889 AAAAGAGATTAT-CTATCTAAGCATCCACATAAGCAATTTTGATCATATAATCTTGTATGTTG-T
450 AAAAGAGATTATCCAAT-TAAGCATCCACATAAGCAATTTTGATCATATAATCTTGCATGTTGAT
*
8844952 AATATAATATAATATATATATATATATATATATATTAGA
514 AATATAATATAATATACATATATATATATATATATTAGA
8844991 TTTAGAAATT
Statistics
Matches: 511, Mismatches: 35, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
601 1 0.00
602 239 0.47
603 134 0.26
604 53 0.10
605 83 0.16
606 1 0.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.42
Consensus pattern (602 bp):
TTTTTATCACAATTCAAAGGTCTCATATTTTCATATAAAGATGTAAGCTTTTATTACTTTAAAAA
TACATGCTTTCTAGTCAATAATTCATTAACTTATCTAAAAGTATTAAATTTAAATAATCTATTAA
AAGAATTTCAATTGTTGATAGATTTTGATTTGAATTTAAATAATTATCTAAAAATTTAAAATTTA
AATAATTTATTAAATAAAATTATTTCACAAAAAATAAAATTTTATTAAGTATATATATTTGGAAT
GCCATTAAATTTAAAAAGAAAAGATAAATTATGATTTAATATATTTGAATTCAAATCTTATGCAA
AAATTTCAATCTTAGATAGATATTGATTTCAATTTAAATAATTATCCAAAATATTAAATTTAAAT
AAATAATTAAAAAATTTATTTGATAAATAAAAAATATAAATATTATCCTATATGTCATTAAAAGA
GATTATCCAATTAAGCATCCACATAAGCAATTTTGATCATATAATCTTGCATGTTGATAATATAA
TATAATATACATATATATATATATATATTAGAATAAAACATTATATTTGTTTGTAAAGCAAAAAC
ATATTTTTATCTAACTT
Found at i:8844970 original size:2 final size:2
Alignment explanation
Indices: 8844953--8844986 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
8844943 GTATGTTGTA
8844953 AT AT A- AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8844987 TAGATTTAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 28 0.93
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8845406 original size:2 final size:2
Alignment explanation
Indices: 8845399--8845430 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
8845389 TCCCTCTTCT
8845399 TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8845431 GACGAAAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8847022 original size:13 final size:13
Alignment explanation
Indices: 8847004--8847030 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8846994 CGCCAAGTTG
8847004 AGAAAAAAAAAAA
1 AGAAAAAAAAAAA
8847017 AGAAAAAAAAAAA
1 AGAAAAAAAAAAA
8847030 A
1 A
8847031 AGGAGTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (13 bp):
AGAAAAAAAAAAA
Found at i:8847025 original size:14 final size:14
Alignment explanation
Indices: 8847006--8847032 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8846996 CCAAGTTGAG
8847006 AAAAAAAAAAAAGA
1 AAAAAAAAAAAAGA
8847020 AAAAAAAAAAAAG
1 AAAAAAAAAAAAG
8847033 GAGTATATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAAGA
Found at i:8849082 original size:13 final size:11
Alignment explanation
Indices: 8849052--8849078 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
8849042 AATAATATAT
8849052 AAAAATTCAAA
1 AAAAATTCAAA
8849063 AAAAATTCAAA
1 AAAAATTCAAA
8849074 AAAAA
1 AAAAA
8849079 AATTTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAAATTCAAA
Found at i:8850085 original size:16 final size:13
Alignment explanation
Indices: 8850027--8850074 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
8850017 AGGATGAAGA
8850027 AGAAG-AGAAAAG
1 AGAAGAAGAAAAG
*
8850039 A-AAGAAGGAAAGAA
1 AGAAGAA-GAAA-AG
8850053 AGAAGAAGAAAAG
1 AGAAGAAGAAAAG
8850066 AGAAGAAGA
1 AGAAGAAGA
8850075 CAAACGCAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
11 3 0.10
12 2 0.07
13 14 0.47
14 6 0.20
15 5 0.17
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (13 bp):
AGAAGAAGAAAAG
Found at i:8851089 original size:9 final size:10
Alignment explanation
Indices: 8851063--8851091 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
8851053 ATCGAGTTTT
8851063 TATATTTTAA
1 TATATTTTAA
8851073 TATATTTTAA
1 TATATTTTAA
8851083 T-TATTTTAA
1 TATATTTTAA
8851092 CTAATAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 8 0.42
10 11 0.58
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
TATATTTTAA
Found at i:8852653 original size:16 final size:15
Alignment explanation
Indices: 8852632--8852682 Score: 59
Period size: 16 Copynumber: 3.4 Consensus size: 15
8852622 TTAGGGTTTT
8852632 GATTTTAAAGTTTGG
1 GATTTTAAAGTTTGG
**
8852647 AGATTTTAGGGTTTGG
1 -GATTTTAAAGTTTGG
8852663 G-TTTTAAAGTTTGG
1 GATTTTAAAGTTTGG
*
8852677 GGTTTT
1 GATTTT
8852683 GATTTAAAGG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
14 12 0.40
15 5 0.17
16 13 0.43
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (15 bp):
GATTTTAAAGTTTGG
Found at i:8852702 original size:20 final size:20
Alignment explanation
Indices: 8852665--8852702 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8852655 GGGTTTGGGT
*
8852665 TTTAAAGTTTGGGGTTTTGA
1 TTTAAAGTTTGGGATTTTGA
8852685 TTTAAAGGTTT-GGATTTT
1 TTTAAA-GTTTGGGATTTT
8852703 AGGGATTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.21, C:0.00, G:0.26, T:0.53
Consensus pattern (20 bp):
TTTAAAGTTTGGGATTTTGA
Found at i:8852713 original size:51 final size:51
Alignment explanation
Indices: 8852620--8852719 Score: 134
Period size: 51 Copynumber: 2.0 Consensus size: 51
8852610 GATATGGAAG
*
8852620 GTTTAGGGTTTTGATTTTAAAGTTTGGAGATTTTAGGGTTTGGGTTTTAAA
1 GTTTAGGGTTTTGATTTTAAAGTTTGGAGATTTTAGGGTTTGGATTTTAAA
*
8852671 GTTTGGGGTTTTGA-TTTAAAGGTTT-G-GATTTTAGGGATTTTGGATTTTA
1 GTTTAGGGTTTTGATTTTAAA-GTTTGGAGATTTTAGGG--TTTGGATTTTA
8852720 GGATTTCGGA
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
49 10 0.23
50 7 0.16
51 27 0.61
ACGTcount: A:0.20, C:0.00, G:0.30, T:0.50
Consensus pattern (51 bp):
GTTTAGGGTTTTGATTTTAAAGTTTGGAGATTTTAGGGTTTGGATTTTAAA
Found at i:8852725 original size:15 final size:15
Alignment explanation
Indices: 8852693--8852782 Score: 126
Period size: 15 Copynumber: 5.9 Consensus size: 15
8852683 GATTTAAAGG
8852693 TTTGGATTTTAGGGAT
1 TTTGGATTTTA-GGAT
8852709 TTTGGATTTTAGGAT
1 TTTGGATTTTAGGAT
*
8852724 TTCGGATTTTAGGAT
1 TTTGGATTTTAGGAT
**
8852739 TTTGGATTTTAGGGG
1 TTTGGATTTTAGGAT
*
8852754 TTTGGATTTAAGGGAT
1 TTTGGATTTTA-GGAT
8852770 TTTGGATTTTAGG
1 TTTGGATTTTAGG
8852783 GGTTTAAGTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
15 42 0.65
16 23 0.35
ACGTcount: A:0.19, C:0.01, G:0.31, T:0.49
Consensus pattern (15 bp):
TTTGGATTTTAGGAT
Found at i:8852783 original size:31 final size:31
Alignment explanation
Indices: 8852691--8852787 Score: 153
Period size: 31 Copynumber: 3.2 Consensus size: 31
8852681 TTGATTTAAA
8852691 GGTTTGGATTTTAGGGATTTTGGATTTTA-G
1 GGTTTGGATTTTAGGGATTTTGGATTTTAGG
*
8852721 GATTTCGGATTTTA-GGATTTTGGATTTTAGG
1 GGTTT-GGATTTTAGGGATTTTGGATTTTAGG
*
8852752 GGTTTGGATTTAAGGGATTTTGGATTTTAGG
1 GGTTTGGATTTTAGGGATTTTGGATTTTAGG
8852783 GGTTT
1 GGTTT
8852788 AAGTTTAGGG
Statistics
Matches: 61, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
30 26 0.43
31 35 0.57
ACGTcount: A:0.18, C:0.01, G:0.33, T:0.48
Consensus pattern (31 bp):
GGTTTGGATTTTAGGGATTTTGGATTTTAGG
Found at i:8853066 original size:17 final size:15
Alignment explanation
Indices: 8853032--8853079 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 15
8853022 TTTTTTTAGC
*
8853032 ATTTTTAA-TATA-T
1 ATTTTTAATTTTATT
8853045 ATTTTTAATTATTACTT
1 ATTTTTAATT-TTA-TT
8853062 ATTTTTAATTTTATT
1 ATTTTTAATTTTATT
8853077 ATT
1 ATT
8853080 ATTCAAACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
13 8 0.27
14 1 0.03
15 7 0.23
16 3 0.10
17 11 0.37
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (15 bp):
ATTTTTAATTTTATT
Found at i:8854287 original size:13 final size:13
Alignment explanation
Indices: 8854269--8854304 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
8854259 TCTGCCATTT
*
8854269 TTTGTTTCTTTTG
1 TTTGTTTATTTTG
*
8854282 TTTGTTTATTTTT
1 TTTGTTTATTTTG
8854295 TTTGTTTATT
1 TTTGTTTATT
8854305 AATAATTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.06, C:0.03, G:0.11, T:0.81
Consensus pattern (13 bp):
TTTGTTTATTTTG
Found at i:8854321 original size:27 final size:26
Alignment explanation
Indices: 8854286--8854346 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 26
8854276 CTTTTGTTTG
* *
8854286 TTTATTTTTTTTGTTTATTAATAATTAT
1 TTTATTTTGTTT-TTTATTAA-AAATAT
8854314 TTTATTTTGTTTTTTATTAAAAATAT
1 TTTATTTTGTTTTTTATTAAAAATAT
8854340 TATTATT
1 T-TTATT
8854347 AAAATTAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
26 6 0.20
27 13 0.43
28 11 0.37
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (26 bp):
TTTATTTTGTTTTTTATTAAAAATAT
Found at i:8854607 original size:23 final size:23
Alignment explanation
Indices: 8854580--8854625 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
8854570 GAGGTCTTAG
8854580 AAATCATGCC-CGAAGATCTTACA
1 AAATCATGCCTCGAAGA-CTTACA
*
8854603 AAATCATGCCTGGAAGACTTACA
1 AAATCATGCCTCGAAGACTTACA
8854626 GAATTACTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 16 0.76
24 5 0.24
ACGTcount: A:0.39, C:0.24, G:0.15, T:0.22
Consensus pattern (23 bp):
AAATCATGCCTCGAAGACTTACA
Found at i:8854760 original size:22 final size:22
Alignment explanation
Indices: 8854733--8854806 Score: 87
Period size: 23 Copynumber: 3.3 Consensus size: 22
8854723 ATATCGAATC
8854733 AAAATTATG-CCTAGAGATCTTA
1 AAAATTATGTCC-AGAGATCTTA
8854755 AAAATTATGTCCAGAGATCTTA
1 AAAATTATGTCCAGAGATCTTA
* * *
8854777 TAGAATCATGTCCAGAGGTCTTA
1 -AAAATTATGTCCAGAGATCTTA
8854800 CAAAATT
1 -AAAATT
8854807 GTTCGGAGGT
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
22 19 0.43
23 25 0.57
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (22 bp):
AAAATTATGTCCAGAGATCTTA
Found at i:8854816 original size:21 final size:21
Alignment explanation
Indices: 8854791--8854850 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 21
8854781 ATCATGTCCA
*
8854791 GAGGTCTTACAAAATTGTTCG
1 GAGGTCTTACAAAATTGCTCG
*
8854812 GAGGTCTTA-GAAATCATGCTCG
1 GAGGTCTTACAAAAT--TGCTCG
*
8854834 GAGGTCTTACAGAATTG
1 GAGGTCTTACAAAATTG
8854851 ACTGGGATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
20 4 0.12
21 11 0.34
22 14 0.44
23 3 0.09
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (21 bp):
GAGGTCTTACAAAATTGCTCG
Found at i:8855034 original size:130 final size:130
Alignment explanation
Indices: 8854810--8855055 Score: 379
Period size: 130 Copynumber: 1.9 Consensus size: 130
8854800 CAAAATTGTT
* * *
8854810 CGGAGGTCTTAGAAATCATGCTCGGAGGTCTTACAGAATTGACTGGGATAACTCCGTAAGTCAGA
1 CGGAGGTCTTAGAAATCATGCTCGGAGGTCTTACAAAATTGACTGGGATAACTCCGCAAGTCAAA
* *
8854875 AATAAAGAATCGATCAGGATAATACCGCGAATCAAAATTATGTTTGAAGGTTTTACAGAATTACC
66 AATAAAGAATCGATCAGGATAACACCGCGAATCAAAATTATATTTGAAGGTTTTACAGAATTACC
8854940 CGGAGGTCTTAGAAATCATG-TCCGGAGGTCTTACAAAATTGACTGGGATAACAT-CGCAAGTCA
1 CGGAGGTCTTAGAAATCATGCT-CGGAGGTCTTACAAAATTGACTGGGATAAC-TCCGCAAGTCA
* * * *
8855003 AAAATAAAGAATCGATCGGGGTAACATCGCGAATCAAAATTATATTTGGAGGT
64 AAAATAAAGAATCGATCAGGATAACACCGCGAATCAAAATTATATTTGAAGGT
8855056 CTTAGAAATC
Statistics
Matches: 105, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
129 1 0.01
130 103 0.98
131 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (130 bp):
CGGAGGTCTTAGAAATCATGCTCGGAGGTCTTACAAAATTGACTGGGATAACTCCGCAAGTCAAA
AATAAAGAATCGATCAGGATAACACCGCGAATCAAAATTATATTTGAAGGTTTTACAGAATTACC
Found at i:8855080 original size:22 final size:22
Alignment explanation
Indices: 8855055--8855114 Score: 66
Period size: 23 Copynumber: 2.7 Consensus size: 22
8855045 TATTTGGAGG
*
8855055 TCTTAGAAATCATGCTCGAAGA
1 TCTTAAAAATCATGCTCGAAGA
* * * *
8855077 TCTTATAGAATCATACTCGGAGG
1 TCTTA-AAAATCATGCTCGAAGA
8855100 TCTTAAAAATCATGC
1 TCTTAAAAATCATGC
8855115 CCGGAGGTCT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
22 13 0.43
23 17 0.57
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (22 bp):
TCTTAAAAATCATGCTCGAAGA
Found at i:8855119 original size:22 final size:22
Alignment explanation
Indices: 8855050--8855126 Score: 91
Period size: 22 Copynumber: 3.5 Consensus size: 22
8855040 AATTATATTT
*
8855050 GGAGGTCTTAGAAATCATGCTC
1 GGAGGTCTTAAAAATCATGCTC
* * * *
8855072 GAAGATCTTATAGAATCATACTC
1 GGAGGTCTTA-AAAATCATGCTC
*
8855095 GGAGGTCTTAAAAATCATGCCC
1 GGAGGTCTTAAAAATCATGCTC
8855117 GGAGGTCTTA
1 GGAGGTCTTA
8855127 CAGAATTGAC
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
22 27 0.61
23 17 0.39
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (22 bp):
GGAGGTCTTAAAAATCATGCTC
Found at i:8855219 original size:22 final size:23
Alignment explanation
Indices: 8855191--8855307 Score: 82
Period size: 22 Copynumber: 5.3 Consensus size: 23
8855181 TACCGTGAAT
8855191 CAAAATTATGCCCGGAGGTCTTA
1 CAAAATTATGCCCGGAGGTCTTA
* * *
8855214 -AAAATTATGCTCAGAGATCTTA
1 CAAAATTATGCCCGGAGGTCTTA
* * **
8855236 CAGAATCATATCC-GAGGTCTTA
1 CAAAATTATGCCCGGAGGTCTTA
* **
8855258 CAGAA-T-TGCTTGGAGGTCTTA
1 CAAAATTATGCCCGGAGGTCTTA
* *
8855279 -AAAATCATGTCCGGAGGTCTTA
1 CAAAATTATGCCCGGAGGTCTTA
*
8855301 CAGAATT
1 CAAAATT
8855308 GACTGGGATA
Statistics
Matches: 68, Mismatches: 21, Indels: 10
0.69 0.21 0.10
Matches are distributed among these distances:
20 4 0.06
21 9 0.13
22 44 0.65
23 11 0.16
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (23 bp):
CAAAATTATGCCCGGAGGTCTTA
Found at i:8855224 original size:154 final size:153
Alignment explanation
Indices: 8854940--8855257 Score: 431
Period size: 154 Copynumber: 2.1 Consensus size: 153
8854930 CAGAATTACC
* * *
8854940 CGGAGGTCTTAGAAATCATGTCCGGAGGTCTTACAAAATTGACTGGGATAACATCGCAAGTCAAA
1 CGGAGGTCTTAAAAATCATGCCCGGAGGTCTTACAAAATTGACTGGGATAACACCGCAAGTCAAA
* * ** * *** *
8855005 AATAAAGAATCGATCGGGGTAACATCGCGAATCAAAATTATATTTGGAGGTCTTAGAAATCATGC
66 AATAAACAATCCATCGGGACAACACCGCGAATCAAAATTATACCCGGAGGTCTTAAAAATCATGC
*
8855070 TC-GAAGATCTTATAGAATCATACT
131 TCAG-AGATCTTACAGAATCATA-T
*
8855094 CGGAGGTCTTAAAAATCATGCCCGGAGGTCTTACAGAATTGACTGGGATAACACCGCAAGTCAAA
1 CGGAGGTCTTAAAAATCATGCCCGGAGGTCTTACAAAATTGACTGGGATAACACCGCAAGTCAAA
* * * * *
8855159 AATAAACAATCCATTGGGACAATACCGTGAATCAAAATTATGCCCGGAGGTCTTAAAAATTATGC
66 AATAAACAATCCATCGGGACAACACCGCGAATCAAAATTATACCCGGAGGTCTTAAAAATCATGC
8855224 TCAGAGATCTTACAGAATCATAT
131 TCAGAGATCTTACAGAATCATAT
*
8855247 CCGAGGTCTTA
1 CGGAGGTCTTA
8855258 CAGAATTGCT
Statistics
Matches: 143, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
153 11 0.08
154 131 0.92
155 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (153 bp):
CGGAGGTCTTAAAAATCATGCCCGGAGGTCTTACAAAATTGACTGGGATAACACCGCAAGTCAAA
AATAAACAATCCATCGGGACAACACCGCGAATCAAAATTATACCCGGAGGTCTTAAAAATCATGC
TCAGAGATCTTACAGAATCATAT
Found at i:8855411 original size:174 final size:174
Alignment explanation
Indices: 8855095--8855415 Score: 509
Period size: 174 Copynumber: 1.8 Consensus size: 174
8855085 AATCATACTC
8855095 GGAGGTCTTAAAAATCATGCCCGGAGGTCTTACAGAATTGACTGGGATAACACCGCAAGTCAAAA
1 GGAGGTCTTAAAAATCATGCCCGGAGGTCTTACAGAATTGACTGGGATAACACCGCAAGTCAAAA
* * * * *
8855160 ATAAACAATCCATTGGGACAATACCGTGAATCAAAATTATGCCCGGAGGTCTTAAAAATTATGCT
66 ATAAACAATCCATCGAGACAATACCGTGAATCAAAATTATGCCCGGAGGTCTTAAAAATCATACC
8855225 CAGAGATCTTACAGAATCATATCCGAGGTCTTACAGAATTGCTT
131 CAGAGATCTTACAGAATCATATCCGAGGTCTTACAGAATTGCTT
* * *
8855269 GGAGGTCTTAAAAATCATGTCCGGAGGTCTTACAGAATTGACTGGGATAACATCGTAAGTCAAAA
1 GGAGGTCTTAAAAATCATGCCCGGAGGTCTTACAGAATTGACTGGGATAACACCGCAAGTCAAAA
* * * *
8855334 ATAAAGAATCGATCGAGACAATATCGTGAATCAAAATTATGCCCGGAGGTCTTAGAAATCATACC
66 ATAAACAATCCATCGAGACAATACCGTGAATCAAAATTATGCCCGGAGGTCTTAAAAATCATACC
*
8855399 C-GAAGGTCTTACAGAAT
131 CAG-AGATCTTACAGAAT
8855416 TGACTGAGAT
Statistics
Matches: 133, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
173 1 0.01
174 132 0.99
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.24
Consensus pattern (174 bp):
GGAGGTCTTAAAAATCATGCCCGGAGGTCTTACAGAATTGACTGGGATAACACCGCAAGTCAAAA
ATAAACAATCCATCGAGACAATACCGTGAATCAAAATTATGCCCGGAGGTCTTAAAAATCATACC
CAGAGATCTTACAGAATCATATCCGAGGTCTTACAGAATTGCTT
Found at i:8855500 original size:110 final size:109
Alignment explanation
Indices: 8855271--8855525 Score: 330
Period size: 110 Copynumber: 2.3 Consensus size: 109
8855261 AATTGCTTGG
* ** * *
8855271 AGGTCTTAAAAATCATGTCCGGAGGTCTTACAGAATTGACTGGGATAACATCGTAAGTCAAAAAT
1 AGGTCTTAGAAATCATACCCGGAGGTCTTACAGAATTGACTGAGATAACACCGTAAGTCAAAAAT
* * * ** *
8855336 AAAGAATCGATCGAGACAATATCGTGAATCAAAATTATGCCCGG
66 AAAGAATCAATCGAAACAATACCACGAATCAAAATTATGCCCGA
* *
8855380 AGGTCTTAGAAATCATACCCGAAGGTCTTACAGAATTGACTGAGATAACACCGTAAGTCGAAAGA
1 AGGTCTTAGAAATCATACCCGGAGGTCTTACAGAATTGACTGAGATAACACCGTAAGTC-AAAAA
* * **
8855445 TAAAGAATCAATCGAAACAATACCACGAATCGAAATTTTGTTCGA
65 TAAAGAATCAATCGAAACAATACCACGAATCAAAATTATGCCCGA
* *
8855490 AGGTCTTAGAAATCATACCTGGAGGTTTTACAGAAT
1 AGGTCTTAGAAATCATACCCGGAGGTCTTACAGAAT
8855526 CATGCCCGGA
Statistics
Matches: 125, Mismatches: 20, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
109 53 0.42
110 72 0.58
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (109 bp):
AGGTCTTAGAAATCATACCCGGAGGTCTTACAGAATTGACTGAGATAACACCGTAAGTCAAAAAT
AAAGAATCAATCGAAACAATACCACGAATCAAAATTATGCCCGA
Found at i:8855526 original size:23 final size:23
Alignment explanation
Indices: 8855490--8855591 Score: 86
Period size: 23 Copynumber: 4.6 Consensus size: 23
8855480 TTTTGTTCGA
* *
8855490 AGGTCTTAGA-AATCATACCTGG
1 AGGTCTTACAGAATCATACCCGG
* *
8855512 AGGTTTTACAGAATCATGCCCGG
1 AGGTCTTACAGAATCATACCCGG
* * *
8855535 AGGTCTTACAGAAT--TGCTCGA
1 AGGTCTTACAGAATCATACCCGG
* * *
8855556 AGGTCTTA-AAAATTATACCTGG
1 AGGTCTTACAGAATCATACCCGG
8855578 AGGTCTTACAGAAT
1 AGGTCTTACAGAAT
8855592 TGACTAGGAT
Statistics
Matches: 63, Mismatches: 13, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
20 4 0.06
21 13 0.21
22 19 0.30
23 27 0.43
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (23 bp):
AGGTCTTACAGAATCATACCCGG
Found at i:8855596 original size:459 final size:458
Alignment explanation
Indices: 8854551--8855677 Score: 1171
Period size: 459 Copynumber: 2.4 Consensus size: 458
8854541 GATAACATCG
* * * * * *
8854551 CGAATCGAAATTATGTTCGGAGGTCTTAGAAATCATGCCCGAAGATCTTACAAAATCATGCCTGG
1 CGAATCGAAATT-TGTTCGAAGGTCTTAGAAATCATACCTGGAGGTCTTAC-AAATCATGCCCGG
* * * * *
8854616 AAGACTTACAGAATTACTTGGAGGTCTTAGAAATCATGCCTGGAGGTCTTACAGAATTGATTGGG
64 AGGTCTTACAGAATTACTCGGAGGTCTTAAAAATCATGCCTGGAGGTCTTACAGAATTGACTGGG
* * * *
8854681 ATAACACCGTAAGTCAAAAGATAAAGAATTGATTGGGATAACATATC-GAATCAAAATTATGCCT
129 ATAACACCGCAAGTCAAAA-ATAAAAAATCGATTGGGA-CA-ATATCGGAATCAAAATTATGCCT
* * *
8854745 AGAGATCTTAAAAATTATGTCCAGAGATCTTATAGAATCATGTCCAGAGGTCTTACAAAATTGTT
191 AGAGGTCTTAAAAATTATGTCCAGAGATCTTACAGAATCATATCCAGAGGTCTTACAAAATTGTT
* *
8854810 CGGAGGTCTTAGAAATCATGCTCGGAGGTCTTACAGAATTGACTGGGATAACTCCGTAAGTCAGA
256 CGGAGGTCTTAAAAATCATGCTCGGAGGTCTTACAGAATTGACTGGGATAACTCCGTAAGTCAAA
*
8854875 AATAAAGAATCGATCAGGATAATACCGCGAATCAAAATTATGTTTGAAGGTTTTACAGAATTACC
321 AATAAAGAATCGATCAGGACAATACCGCGAATCAAAA-TA--TTT-AA----TT--AG----ACC
** * * *
8854940 CGGAGGTCTTAGAAATCATGTCCGGAGGTCTTACAAAATTGACTGGGATAACATCGCAAGTCAAA
372 CGGAGGTCTTAGAAATCATACCCGAAGGTCTTACAAAATTGACTGAGATAACACCGCAAGTCAAA
* ***
8855005 AATAAAGAATCGATCGGGGTAA
437 AATAAAGAATCAATCGCAATAA
* ** * * *
8855027 C--ATC-------G--CGAA--TC--A-AAATTATATTTGGAGGTCTTAGAAATCATGCTCGAAG
1 CGAATCGAAATTTGTTCGAAGGTCTTAGAAATCATACCTGGAGGTCTTACAAATCATGCCCGGAG
* * *
8855076 ATCTTATAGAATCATACTCGGAGGTCTTAAAAATCATGCCCGGAGGTCTTACAGAATTGACTGGG
66 GTCTTACAGAAT--TACTCGGAGGTCTTAAAAATCATGCCTGGAGGTCTTACAGAATTGACTGGG
* * * **
8855141 ATAACACCGCAAGTCAAAAATAAACAATCCATTGGGACAATACCGTGAATCAAAATTATGCCCGG
129 ATAACACCGCAAGTCAAAAATAAAAAATCGATTGGGACAATATCG-GAATCAAAATTATGCCTAG
*
8855206 AGGTCTTAAAAATTATG-CTCAGAGATCTTACAGAATCATATCC-GAGGTCTTACAGAATTGCTT
193 AGGTCTTAAAAATTATGTC-CAGAGATCTTACAGAATCATATCCAGAGGTCTTACAAAATTG-TT
8855269 -GGAGGTCTTAAAAATCATG-TCCGGAGGTCTTACAGAATTGACTGGGATAACAT-CGTAAGTCA
256 CGGAGGTCTTAAAAATCATGCT-CGGAGGTCTTACAGAATTGACTGGGATAAC-TCCGTAAGTCA
* *
8855331 AAAATAAAGAATCGATC-GAGACAATATCGTGAATC-AAA-A-TT-A-T-G-CCCGGAGGTCTTA
319 AAAATAAAGAATCGATCAG-GACAATACCGCGAATCAAAATATTTAATTAGACCCGGAGGTCTTA
* * *
8855388 GAAATCATACCCGAAGGTCTTACAGAATTGACTGAGATAACACCGTAAGTCGAAAGATAAAGAAT
383 GAAATCATACCCGAAGGTCTTACAAAATTGACTGAGATAACACCGCAAGTC-AAAAATAAAGAAT
8855453 CAATCGAAACAATACCA
447 CAATCG---CAATA--A
*
8855470 CGAATCGAAATTTTGTTCGAAGGTCTTAGAAATCATACCTGGAGGTTTTACAGAATCATGCCCGG
1 CGAATCGAAA-TTTGTTCGAAGGTCTTAGAAATCATACCTGGAGGTCTTACA-AATCATGCCCGG
* * * * *
8855535 AGGTCTTACAGAATTGCTCGAAGGTCTTAAAAATTATACCTGGAGGTCTTACAGAATTGACTAGG
64 AGGTCTTACAGAATTACTCGGAGGTCTTAAAAATCATGCCTGGAGGTCTTACAGAATTGACTGGG
* * * * *
8855600 ATAACACCGCAAGTCAAAAATAAAAAATCGATCGAGACAACATCGCGAATCGAAATTATGCTTAG
129 ATAACACCGCAAGTCAAAAATAAAAAATCGATTGGGACAATATCG-GAATCAAAATTATGCCTAG
8855665 AGGTCTTAAAAAT
193 AGGTCTTAAAAAT
8855678 CATATCCGAA
Statistics
Matches: 543, Mismatches: 75, Indels: 83
0.77 0.11 0.12
Matches are distributed among these distances:
437 57 0.10
438 17 0.03
441 2 0.00
442 1 0.00
443 2 0.00
445 4 0.01
450 1 0.00
452 2 0.00
453 1 0.00
455 5 0.01
457 11 0.02
458 124 0.23
459 200 0.37
460 84 0.15
461 22 0.04
462 2 0.00
464 3 0.01
466 1 0.00
474 3 0.01
476 1 0.00
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.26
Consensus pattern (458 bp):
CGAATCGAAATTTGTTCGAAGGTCTTAGAAATCATACCTGGAGGTCTTACAAATCATGCCCGGAG
GTCTTACAGAATTACTCGGAGGTCTTAAAAATCATGCCTGGAGGTCTTACAGAATTGACTGGGAT
AACACCGCAAGTCAAAAATAAAAAATCGATTGGGACAATATCGGAATCAAAATTATGCCTAGAGG
TCTTAAAAATTATGTCCAGAGATCTTACAGAATCATATCCAGAGGTCTTACAAAATTGTTCGGAG
GTCTTAAAAATCATGCTCGGAGGTCTTACAGAATTGACTGGGATAACTCCGTAAGTCAAAAATAA
AGAATCGATCAGGACAATACCGCGAATCAAAATATTTAATTAGACCCGGAGGTCTTAGAAATCAT
ACCCGAAGGTCTTACAAAATTGACTGAGATAACACCGCAAGTCAAAAATAAAGAATCAATCGCAA
TAA
Found at i:8855604 original size:285 final size:283
Alignment explanation
Indices: 8855094--8855688 Score: 771
Period size: 285 Copynumber: 2.1 Consensus size: 283
8855084 GAATCATACT
* * *
8855094 CGGAGGTCTTAAAAATCATGCCCGGAGGTCTTACAGAATTGACTGGGATAACACCGCAAGTCAAA
1 CGGAGGTCTTAAAAATCATACCCGAAGGTCTTACAGAATTGACTGAGATAACACCGCAAGTCAAA
* * ** ** * * *
8855159 AATAAACAATCCATTGGGACAATACCGTGAATCAAAATTATGCCCGGAGGTCTTAAAAATTATGC
66 AATAAACAATCAATCGAAACAATACCACGAATCAAAATTATGCCCGAAGGTCTTAAAAATCATCC
* * * *
8855224 TCAGAGATCTTACAGAATCATATCCGAGGTCTTACAGAATTGCTTGGAGGTCTTAAAAATCATGT
131 TCAGAGATCTTACAGAATCATACCCGAGGTCTTACAGAATTGCTCGAAGGTCTTAAAAATCATGA
* * * *
8855289 CCGGAGGTCTTACAGAATTGACTGGGATAACATCGTAAGTCAAAAATAAAGAATCGATCGAGACA
196 CCGGAGGTCTTACAGAATTGACTAGGATAACACCGCAAGTCAAAAATAAAAAATCGATCGAGACA
* *
8855354 ATATCGTGAATCAAAATTATGCC
261 ACATCGCGAATCAAAATTATGCC
* *
8855377 CGGAGGTCTTAGAAATCATACCCGAAGGTCTTACAGAATTGACTGAGATAACACCGTAAGTCGAA
1 CGGAGGTCTTAAAAATCATACCCGAAGGTCTTACAGAATTGACTGAGATAACACCGCAAGTC-AA
* * * * ** *
8855442 AGATAAAGAATCAATCGAAACAATACCACGAATCGAAATTTTGTTCGAAGGTCTTAGAAATCATA
65 AAATAAACAATCAATCGAAACAATACCACGAATCAAAATTATGCCCGAAGGTCTTAAAAATCAT-
* * * * *
8855507 CCT-GGAGGTTTTACAGAATCATGCCCGGAGGTCTTACAGAATTGCTCGAAGGTCTTAAAAATTA
129 CCTCAGAGATCTTACAGAATCATACCC-GAGGTCTTACAGAATTGCTCGAAGGTCTTAAAAATCA
8855571 T-ACCTGGAGGTCTTACAGAATTGACTAGGATAACACCGCAAGTCAAAAATAAAAAATCGATCGA
193 TGACC-GGAGGTCTTACAGAATTGACTAGGATAACACCGCAAGTCAAAAATAAAAAATCGATCGA
* *
8855635 GACAACATCGCGAATCGAAATTATGCT
257 GACAACATCGCGAATCAAAATTATGCC
** *
8855662 TAGAGGTCTTAAAAATCATATCCGAAG
1 CGGAGGTCTTAAAAATCATACCCGAAG
8855689 ATTTTACAAA
Statistics
Matches: 266, Mismatches: 42, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
283 57 0.21
284 71 0.27
285 138 0.52
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.24
Consensus pattern (283 bp):
CGGAGGTCTTAAAAATCATACCCGAAGGTCTTACAGAATTGACTGAGATAACACCGCAAGTCAAA
AATAAACAATCAATCGAAACAATACCACGAATCAAAATTATGCCCGAAGGTCTTAAAAATCATCC
TCAGAGATCTTACAGAATCATACCCGAGGTCTTACAGAATTGCTCGAAGGTCTTAAAAATCATGA
CCGGAGGTCTTACAGAATTGACTAGGATAACACCGCAAGTCAAAAATAAAAAATCGATCGAGACA
ACATCGCGAATCAAAATTATGCC
Found at i:8855848 original size:152 final size:152
Alignment explanation
Indices: 8855523--8855869 Score: 417
Period size: 152 Copynumber: 2.3 Consensus size: 152
8855513 GGTTTTACAG
* * * * * * *** *
8855523 AATCATGCCCGGAGGTCTTACAGAATTGCTCGAAGGTCTTAAAAATTATACCTGGAGGTCTTACA
1 AATCATGTCCGAAGGTCTTACAAAATTACCCGAAGGTCTTAAAAATCATACCCAAAAGTCTTACA
* * * *
8855588 GAATTGACTAGGATAACACCGCAAGTCAAAAATAAAAAATCGATCGAGACAACATCGCGAATCGA
66 GAATTGACTAAGATAACACCGCAAGTCAAAAATAAAAAATCGATCGAGACAACACCACGAATCAA
**
8855653 AATTATGCTTAGAGGTCTTAAA
131 AATTATGCCGAGAGGTCTTAAA
* * * * * *
8855675 AATCATATCCGAAGATTTTACAAAATTACCCGGAGGTCTTAAAAATCATGCCCAAAAGTCTTGCA
1 AATCATGTCCGAAGGTCTTACAAAATTACCCGAAGGTCTTAAAAATCATACCCAAAAGTCTTACA
* * *
8855740 GAATTGACTAAGATAACACCGTAAGTCAAAAATAAAGAATCGATCGAGACAACGCCACGAATCAA
66 GAATTGACTAAGATAACACCGCAAGTCAAAAATAAAAAATCGATCGAGACAACACCACGAATCAA
8855805 AATTATGCCCGA-AGGTCTTAAA
131 AATTATG-CCGAGAGGTCTTAAA
* *
8855827 AATCATGTCCGAAGGTCTTACAGAATCATGCCCGAAGGTCTTA
1 AATCATGTCCGAAGGTCTTACAAAAT--TACCCGAAGGTCTTA
8855870 CAGAATTATT
Statistics
Matches: 161, Mismatches: 31, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
152 146 0.91
153 2 0.01
154 13 0.08
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (152 bp):
AATCATGTCCGAAGGTCTTACAAAATTACCCGAAGGTCTTAAAAATCATACCCAAAAGTCTTACA
GAATTGACTAAGATAACACCGCAAGTCAAAAATAAAAAATCGATCGAGACAACACCACGAATCAA
AATTATGCCGAGAGGTCTTAAA
Found at i:8855861 original size:23 final size:23
Alignment explanation
Indices: 8855809--8855918 Score: 120
Period size: 23 Copynumber: 5.0 Consensus size: 23
8855799 AATCAAAATT
*
8855809 ATGCCCGAAGGTCTTA-AAAATC
1 ATGCCCGAAGGTCTTACAGAATC
*
8855831 ATGTCCGAAGGTCTTACAGAATC
1 ATGCCCGAAGGTCTTACAGAATC
*
8855854 ATGCCCGAAGGTCTTACAGAATT
1 ATGCCCGAAGGTCTTACAGAATC
* *
8855877 AT--TCGAAGGTCTTA-AAAATC
1 ATGCCCGAAGGTCTTACAGAATC
* * *
8855897 ATGCCTGGAGGTTTTACAGAAT
1 ATGCCCGAAGGTCTTACAGAAT
8855919 TGATTGGGAT
Statistics
Matches: 72, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
20 6 0.08
21 11 0.15
22 23 0.32
23 32 0.44
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (23 bp):
ATGCCCGAAGGTCTTACAGAATC
Found at i:8855872 original size:327 final size:329
Alignment explanation
Indices: 8855365--8856007 Score: 932
Period size: 327 Copynumber: 2.0 Consensus size: 329
8855355 TATCGTGAAT
* * * *
8855365 CAAAATTATGCCCGGAGGTCTTAGAAATCATACCCGAAGGTCTTACAGAATTGACTGAGATAACA
1 CAAAATTA-GCCCGGAGGTCTTAAAAATCATACCCAAAAGTCTTACAGAATTGACTAAGATAACA
* * * * **
8855430 CCGTAAGTCGAAAGATAAAGAATCAATCGAAACAATACCACGAATCGAAATTTTGTTCGAAGGTC
65 CCGTAAGTCGAAAAATAAAGAATCAATCGAAACAACACCACGAATCAAAATTATGCCCGAAGGTC
* * * * *
8855495 TTAGAAATCATACCTGGAGGTTTTACAGAATCATGCCCGGAGGTCTTACAGAATTGCTCGAAGGT
130 TTAAAAATCATACCTGAAGGTCTTACAGAATCATGCCCGAAGGTCTTACAGAATTACTCGAAGGT
* *
8855560 CTTAAAAATTATACCTGGAGGTCTTACAGAATTGACTAGGATAACACCGCAAGTCAAAAATAAAA
195 CTTAAAAATCATACCTGGAGGTCTTACAGAATTGACTAGGATAACACCGCAAGTCAAAAACAAAA
*
8855625 AATCGATCGAGACAACATCGCGAATCGAAATTATGCTTAGAGGTCTTAAAAATCATATCCGAAGA
260 AATCGATCGAGACAACATCGCGAATCGAAATTATGCTCAGAGGTCTTAAAAATCATATCCGAAGA
8855690 TTTTA
325 TTTTA
* *
8855695 CAAAATTA-CCCGGAGGTCTTAAAAATCATGCCCAAAAGTCTTGCAGAATTGACTAAGATAACAC
1 CAAAATTAGCCCGGAGGTCTTAAAAATCATACCCAAAAGTCTTACAGAATTGACTAAGATAACAC
* * *
8855759 CGTAAGTC-AAAAATAAAGAATCGATCGAGACAACGCCACGAATCAAAATTATGCCCGAAGGTCT
66 CGTAAGTCGAAAAATAAAGAATCAATCGAAACAACACCACGAATCAAAATTATGCCCGAAGGTCT
* *
8855823 TAAAAATCATGTCC-GAAGGTCTTACAGAATCATGCCCGAAGGTCTTACAGAATTATTCGAAGGT
131 TAAAAATCAT-ACCTGAAGGTCTTACAGAATCATGCCCGAAGGTCTTACAGAATTACTCGAAGGT
* * * * * * * *
8855887 CTTAAAAATCATGCCTGGAGGTTTTACAGAATTGATTGGGATAACACCGTAAGTTAGAAACAAAG
195 CTTAAAAATCATACCTGGAGGTCTTACAGAATTGACTAGGATAACACCGCAAGTCAAAAACAAAA
* *
8855952 AATCGATCGAGACAACATCGCGAATCGAAATTATGCTCGGAGGTCTTAGAAATCAT
260 AATCGATCGAGACAACATCGCGAATCGAAATTATGCTCAGAGGTCTTAAAAATCAT
8856008 GCCCAAAAGT
Statistics
Matches: 277, Mismatches: 35, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
327 209 0.75
328 60 0.22
330 8 0.03
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (329 bp):
CAAAATTAGCCCGGAGGTCTTAAAAATCATACCCAAAAGTCTTACAGAATTGACTAAGATAACAC
CGTAAGTCGAAAAATAAAGAATCAATCGAAACAACACCACGAATCAAAATTATGCCCGAAGGTCT
TAAAAATCATACCTGAAGGTCTTACAGAATCATGCCCGAAGGTCTTACAGAATTACTCGAAGGTC
TTAAAAATCATACCTGGAGGTCTTACAGAATTGACTAGGATAACACCGCAAGTCAAAAACAAAAA
ATCGATCGAGACAACATCGCGAATCGAAATTATGCTCAGAGGTCTTAAAAATCATATCCGAAGAT
TTTA
Found at i:8855914 original size:43 final size:44
Alignment explanation
Indices: 8855802--8855919 Score: 141
Period size: 43 Copynumber: 2.7 Consensus size: 44
8855792 CGCCACGAAT
* * *
8855802 CAAAATTATGCCCGAAGGTCTTA-AAAATCATGTCCGAAGGTCTTA
1 CAAAATCATGCCCGAAGGTCTTACAGAATTAT-T-CGAAGGTCTTA
*
8855847 CAGAATCATGCCCGAAGGTCTTACAGAATTATTCGAAGGTCTTA
1 CAAAATCATGCCCGAAGGTCTTACAGAATTATTCGAAGGTCTTA
* * *
8855891 -AAAATCATGCCTGGAGGTTTTACAGAATT
1 CAAAATCATGCCCGAAGGTCTTACAGAATT
8855920 GATTGGGATA
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
43 25 0.39
44 11 0.17
45 22 0.34
46 6 0.09
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (44 bp):
CAAAATCATGCCCGAAGGTCTTACAGAATTATTCGAAGGTCTTA
Found at i:8855999 original size:175 final size:174
Alignment explanation
Indices: 8855667--8856027 Score: 434
Period size: 175 Copynumber: 2.1 Consensus size: 174
8855657 ATGCTTAGAG
* ** * * * ** *
8855667 GTCTTAAAAATCATATCCGAAGATTTTACAAAATTACCCGGAGGTCTTAAAAATCATGCCCAAAA
1 GTCTTACAAATCATGCCCGAAGGTCTTACAGAATTATTCGAAGGTCTTAAAAATCATGCCCAAAA
* * *
8855732 GTCTTGCAGAATTGACTAAGATAACACCGTAAGTCAAAAATAAAGAATCGATCGAGACAACGCCA
66 GTCTTACAGAATTGACTAAGATAACACCGTAAGTCAAAAACAAAGAATCGATCGAGACAACACCA
* * *
8855797 CGAATCAAAATTATGCCCGAAGGTCTTAAAAATCATGTCCGAAG
131 CGAATCAAAATTATGCCCGAAGGTCTTAAAAATCATGCCCAAAA
***
8855841 GTCTTACAGAATCATGCCCGAAGGTCTTACAGAATTATTCGAAGGTCTTAAAAATCATGCCTGGA
1 GTCTTACA-AATCATGCCCGAAGGTCTTACAGAATTATTCGAAGGTCTTAAAAATCATGCCCAAA
* * * ** * * *
8855906 GGTTTTACAGAATTGATTGGGATAACACCGTAAGTTAGAAACAAAGAATCGATCGAGACAACATC
65 AGTCTTACAGAATTGACTAAGATAACACCGTAAGTCAAAAACAAAGAATCGATCGAGACAACACC
* * * * *
8855971 GCGAATCGAAATTATGCTCGGAGGTCTTAGAAATCATGCCCAAAA
130 ACGAATCAAAATTATGCCCGAAGGTCTTAAAAATCATGCCCAAAA
8856016 GTCTTACAAATC
1 GTCTTACAAATC
8856028 TCAAAATCTT
Statistics
Matches: 155, Mismatches: 31, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
174 11 0.07
175 144 0.93
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (174 bp):
GTCTTACAAATCATGCCCGAAGGTCTTACAGAATTATTCGAAGGTCTTAAAAATCATGCCCAAAA
GTCTTACAGAATTGACTAAGATAACACCGTAAGTCAAAAACAAAGAATCGATCGAGACAACACCA
CGAATCAAAATTATGCCCGAAGGTCTTAAAAATCATGCCCAAAA
Found at i:8856244 original size:41 final size:41
Alignment explanation
Indices: 8856157--8856256 Score: 132
Period size: 41 Copynumber: 2.5 Consensus size: 41
8856147 AGGAAGGTTC
**
8856157 CCTC-TAAACAGAGGCTTTGAAATCTTGATTGAAATTGATT
1 CCTCTTAAACAGAGGCTTTGAAATCTTGATTGAAACAGATT
8856197 CCTCTTAAACAGAGGCTTTGAAATCTTGATTGAAAACAG-TT
1 CCTCTTAAACAGAGGCTTTGAAATCTTGATTG-AAACAGATT
* * *
8856238 CTTCTTAATCAGAGACTTT
1 CCTCTTAAACAGAGGCTTT
8856257 AAAACATTCT
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
40 4 0.08
41 45 0.85
42 4 0.08
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (41 bp):
CCTCTTAAACAGAGGCTTTGAAATCTTGATTGAAACAGATT
Found at i:8856513 original size:24 final size:25
Alignment explanation
Indices: 8856486--8856532 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
8856476 ATACAGATGC
8856486 TATGATGCAAATGCAAAT-TCTTCT
1 TATGATGCAAATGCAAATGTCTTCT
* **
8856510 TATGGTGTGAATGCAAATGTCTT
1 TATGATGCAAATGCAAATGTCTT
8856533 ATACAAATGC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38
Consensus pattern (25 bp):
TATGATGCAAATGCAAATGTCTTCT
Found at i:8857983 original size:19 final size:19
Alignment explanation
Indices: 8857955--8857994 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
8857945 AATATGTCCC
*
8857955 TTTTGTTTGTTTTCTTTTT
1 TTTTGCTTGTTTTCTTTTT
*
8857974 TTTTGCTTGTTTTGTTTTT
1 TTTTGCTTGTTTTCTTTTT
8857993 TT
1 TT
8857995 GTTTTTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.00, C:0.05, G:0.12, T:0.82
Consensus pattern (19 bp):
TTTTGCTTGTTTTCTTTTT
Found at i:8864623 original size:30 final size:29
Alignment explanation
Indices: 8864589--8864700 Score: 82
Period size: 30 Copynumber: 3.6 Consensus size: 29
8864579 ATATGGAAGG
* *
8864589 TTTAGGGTTTTGATTTTAGAGTTTAGAGAT
1 TTTAGGGTTTGGATTTTAAAGTTTAGAG-T
* *
8864619 TTTAGGGTTTGGGTTTTAAAGTTTGGAGTTTT
1 TTTAGGGTTTGGATTTTAAAGTTTAGAG---T
*
8864651 GATTTAAGGGTTTGGATTTTAAAGATTTTG-GAT
1 --TTT-AGGGTTTGGATTTTAAAG-TTTAGAG-T
8864684 TTTAGGGGTTTGGATTT
1 TTTA-GGGTTTGGATTT
8864701 AAGGGATTTT
Statistics
Matches: 67, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
30 25 0.37
31 15 0.22
32 1 0.01
33 1 0.01
34 3 0.04
35 18 0.27
36 4 0.06
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (29 bp):
TTTAGGGTTTGGATTTTAAAGTTTAGAGT
Done.