Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 50 of 117
Found at i:9229312 original size:13 final size:12
Alignment explanation
Indices: 9229283--9229313 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
9229273 TACCCTGAAG
9229283 ATAGAAAAAGAA
1 ATAGAAAAAGAA
9229295 ATAGAAAAAGAA
1 ATAGAAAAAGAA
9229307 ATTAGAA
1 A-TAGAA
9229314 GTATTGATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.72
13 5 0.28
ACGTcount: A:0.71, C:0.00, G:0.16, T:0.13
Consensus pattern (12 bp):
ATAGAAAAAGAA
Found at i:9231021 original size:15 final size:14
Alignment explanation
Indices: 9231001--9231035 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
9230991 TGGAAAAAGA
9231001 GGAAGGGAAGAGAAG
1 GGAAGGGAAG-GAAG
9231016 GGAAGGGAAGGAAG
1 GGAAGGGAAGGAAG
*
9231030 GAAAGG
1 GGAAGG
9231036 ATGTCCTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (14 bp):
GGAAGGGAAGGAAG
Found at i:9232191 original size:81 final size:81
Alignment explanation
Indices: 9232051--9232213 Score: 299
Period size: 81 Copynumber: 2.0 Consensus size: 81
9232041 AGGATGTGTT
* **
9232051 ATAGCCCTTGTTCGGTAAGGAGTGGGAAGGGAATGGAGGACCTATAACTTGTTGTGTCCTTTACA
1 ATAGCCCTTGTTCAGTAAGGAGTGGGAAGGGAATGGAGGACCTATAACTTGTTACGTCCTTTACA
9232116 ACTATATCCTTTTCTA
66 ACTATATCCTTTTCTA
9232132 ATAGCCCTTGTTCAGTAAGGAGTGGGAAGGGAATGGAGGACCTATAACTTGTTACGTCCTTTACA
1 ATAGCCCTTGTTCAGTAAGGAGTGGGAAGGGAATGGAGGACCTATAACTTGTTACGTCCTTTACA
9232197 ACTATATCCTTTTCTA
66 ACTATATCCTTTTCTA
9232213 A
1 A
9232214 GGCTTGCATG
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (81 bp):
ATAGCCCTTGTTCAGTAAGGAGTGGGAAGGGAATGGAGGACCTATAACTTGTTACGTCCTTTACA
ACTATATCCTTTTCTA
Found at i:9234031 original size:2 final size:2
Alignment explanation
Indices: 9234024--9234051 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
9234014 CTAAAGGTTC
9234024 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9234052 GGAGAGAGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9234058 original size:2 final size:2
Alignment explanation
Indices: 9234053--9234090 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
9234043 TATATATATG
9234053 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA -A GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
9234091 TTTCCATGCC
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:9236535 original size:15 final size:15
Alignment explanation
Indices: 9236515--9236543 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
9236505 GAATAACTCT
9236515 TTTATGGAATAATTG
1 TTTATGGAATAATTG
9236530 TTTATGGAATAATT
1 TTTATGGAATAATT
9236544 ATTCAAGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.48
Consensus pattern (15 bp):
TTTATGGAATAATTG
Found at i:9241994 original size:2 final size:2
Alignment explanation
Indices: 9241987--9242030 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
9241977 GTTATTCTTT
9241987 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
9242029 TC
1 TC
9242031 CCATTCTTTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:9250275 original size:3 final size:3
Alignment explanation
Indices: 9250263--9250296 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
9250253 AAATATTTTT
9250263 TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
9250297 GATGTTTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:9250510 original size:27 final size:28
Alignment explanation
Indices: 9250457--9250510 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 28
9250447 GTGATTCAAA
* * *
9250457 ATTTTATTATTCGATTTAATTTGAATTG
1 ATTTTATTATTCGAATTAAATTAAATTG
*
9250485 ATTTT-TTATTTGAATTAAATTAAATT
1 ATTTTATTATTCGAATTAAATTAAATT
9250511 TAAATATTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 17 0.77
28 5 0.23
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.57
Consensus pattern (28 bp):
ATTTTATTATTCGAATTAAATTAAATTG
Found at i:9250521 original size:13 final size:13
Alignment explanation
Indices: 9250503--9250537 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
9250493 TTTGAATTAA
9250503 ATTAAATTTAAAT
1 ATTAAATTTAAAT
* *
9250516 ATTAAATGTATAT
1 ATTAAATTTAAAT
9250529 ATTAAATTT
1 ATTAAATTT
9250538 GAACTAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (13 bp):
ATTAAATTTAAAT
Found at i:9250521 original size:18 final size:18
Alignment explanation
Indices: 9250498--9250557 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
9250488 TTTTATTTGA
9250498 ATTAAATTAAATTTAAAT
1 ATTAAATTAAATTTAAAT
*
9250516 ATTAAATGTATATATTAAAT
1 ATTAAAT-TAAAT-TTAAAT
* * *
9250536 -TTGAACTAAATTTTAA-
1 ATTAAATTAAATTTAAAT
9250552 ATTAAA
1 ATTAAA
9250558 AAATTAAAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
17 8 0.24
18 11 0.33
19 8 0.24
20 6 0.18
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (18 bp):
ATTAAATTAAATTTAAAT
Found at i:9251907 original size:53 final size:53
Alignment explanation
Indices: 9251815--9251920 Score: 149
Period size: 53 Copynumber: 2.0 Consensus size: 53
9251805 CTTTACAATC
* * * *
9251815 TATACCTTCTATTATCTACCTGCAGAATGGATTGCAAAAATATAAGTCATCCT
1 TATACCTTCTATCATCTACCTCCAGAATGGATAGCAAAAATATAAGCCATCCT
* * *
9251868 TATAGCTTCTATCATCTACTTCCAGAATGGATAGTAAAAATATAAGCCATCCT
1 TATACCTTCTATCATCTACCTCCAGAATGGATAGCAAAAATATAAGCCATCCT
9251921 CTGGTCTGAT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 46 1.00
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.33
Consensus pattern (53 bp):
TATACCTTCTATCATCTACCTCCAGAATGGATAGCAAAAATATAAGCCATCCT
Found at i:9259688 original size:20 final size:20
Alignment explanation
Indices: 9259656--9259693 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
9259646 CTTGTCACAT
*
9259656 ATTTTATTATTTTTATATTA
1 ATTTTATTATTTTAATATTA
9259676 ATTTT-TTATTTTTAATAT
1 ATTTTATTA-TTTTAATAT
9259694 ATAAAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (20 bp):
ATTTTATTATTTTAATATTA
Found at i:9261147 original size:18 final size:18
Alignment explanation
Indices: 9261124--9261158 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
9261114 ATATTTTTAA
9261124 ATATAAATATAAAATTAT
1 ATATAAATATAAAATTAT
9261142 ATATAAATATAAAATTA
1 ATATAAATATAAAATTA
9261159 AAAAATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
ATATAAATATAAAATTAT
Found at i:9261153 original size:24 final size:23
Alignment explanation
Indices: 9261104--9261154 Score: 75
Period size: 24 Copynumber: 2.2 Consensus size: 23
9261094 TATTATTTTT
* *
9261104 TAAATATAAAATATTTTTAAATA
1 TAAATATAAAATATATATAAATA
9261127 TAAATATAAAATTATATATAAATA
1 TAAATATAAAA-TATATATAAATA
9261151 TAAA
1 TAAA
9261155 ATTAAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 11 0.44
24 14 0.56
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (23 bp):
TAAATATAAAATATATATAAATA
Found at i:9261169 original size:18 final size:18
Alignment explanation
Indices: 9261120--9261162 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
9261110 TAAAATATTT
*
9261120 TTAAATATAAATATAAAA
1 TTAAAAATAAATATAAAA
* *
9261138 TTATATATAAATATAAAA
1 TTAAAAATAAATATAAAA
9261156 TTAAAAA
1 TTAAAAA
9261163 ATAATATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
TTAAAAATAAATATAAAA
Found at i:9261169 original size:24 final size:24
Alignment explanation
Indices: 9261104--9261185 Score: 69
Period size: 24 Copynumber: 3.3 Consensus size: 24
9261094 TATTATTTTT
* *
9261104 TAAATAT-AAAATATTTTTAAATA
1 TAAATATAAAAATATATATAAATA
*
9261127 TAAATATAAAATTATATATAAATA
1 TAAATATAAAAATATATATAAATA
*
9261151 TAAA-ATTAAAAAATAATATTATATATA
1 TAAATA-T-AAAAAT-ATA-TATAAATA
*
9261178 TATATATA
1 TAAATATA
9261186 GAACAGGTTA
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
23 8 0.17
24 18 0.38
25 5 0.11
26 4 0.09
27 11 0.23
28 1 0.02
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (24 bp):
TAAATATAAAAATATATATAAATA
Found at i:9268076 original size:2 final size:2
Alignment explanation
Indices: 9268069--9268097 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
9268059 TCGGCAGATT
9268069 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9268098 AATGAACACC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9274355 original size:1 final size:1
Alignment explanation
Indices: 9274349--9274375 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
9274339 ATTAAACAGG
9274349 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
9274376 AGTTGAGGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:9278428 original size:11 final size:10
Alignment explanation
Indices: 9278412--9278460 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
9278402 AGAAAATCAC
9278412 TATATTATTTA
1 TATATT-TTTA
9278423 TATATTTTTA
1 TATATTTTTA
9278433 -ATA-TTTTA
1 TATATTTTTA
9278441 T-TATTTTTTA
1 TATA-TTTTTA
*
9278451 AATATTTTTA
1 TATATTTTTA
9278461 AAAAATTTCA
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
8 7 0.21
9 3 0.09
10 15 0.45
11 8 0.24
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
TATATTTTTA
Found at i:9283177 original size:14 final size:14
Alignment explanation
Indices: 9283158--9283207 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
9283148 ATTTAATTTT
9283158 TATTTATATATATA
1 TATTTATATATATA
9283172 TATTTATATAATGATA
1 TATTTATAT-AT-ATA
* * *
9283188 TTTTTAAATATTTA
1 TATTTATATATATA
9283202 TATTTA
1 TATTTA
9283208 AAAAATAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
14 16 0.53
15 4 0.13
16 10 0.33
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (14 bp):
TATTTATATATATA
Found at i:9283206 original size:30 final size:30
Alignment explanation
Indices: 9283160--9283221 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
9283150 TTAATTTTTA
* * * *
9283160 TTTATATATATATATTTATATAATGATATT
1 TTTAAATATATATATTTAAAAAATAATATT
*
9283190 TTTAAATATTTATATTTAAAAAATAATATT
1 TTTAAATATATATATTTAAAAAATAATATT
9283220 TT
1 TT
9283222 ATATTTTTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (30 bp):
TTTAAATATATATATTTAAAAAATAATATT
Found at i:9283224 original size:21 final size:22
Alignment explanation
Indices: 9283194--9283245 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
9283184 GATATTTTTA
9283194 AATA-TTTATA-TTTAAAAAAT
1 AATATTTTATATTTTAAAAAAT
*
9283214 AATATTTTATATTTTTAAAAAT
1 AATATTTTATATTTTAAAAAAT
9283236 AATATTTTAT
1 AATATTTTAT
9283246 TAATTTTGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 4 0.14
21 6 0.21
22 19 0.66
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
AATATTTTATATTTTAAAAAAT
Found at i:9283252 original size:23 final size:22
Alignment explanation
Indices: 9283194--9283252 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
9283184 GATATTTTTA
*
9283194 AATA-TTTAT-ATTTAAAAAAT
1 AATATTTTATAATTTTAAAAAT
*
9283214 AATATTTTATATTTTTAAAAAT
1 AATATTTTATAATTTTAAAAAT
9283236 AATATTTTATTAATTTT
1 AATATTTTA-TAATTTT
9283253 GGGACGGATC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 4 0.12
21 5 0.15
22 18 0.55
23 6 0.18
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
AATATTTTATAATTTTAAAAAT
Found at i:9286799 original size:13 final size:13
Alignment explanation
Indices: 9286765--9286800 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
9286755 CGAATTTTTA
9286765 AGAGGTTTTGAGT
1 AGAGGTTTTGAGT
*
9286778 A-AGGGTTTGAGT
1 AGAGGTTTTGAGT
9286790 AGAGGTTTTGA
1 AGAGGTTTTGA
9286801 AAGTTTGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.25, C:0.00, G:0.39, T:0.36
Consensus pattern (13 bp):
AGAGGTTTTGAGT
Found at i:9286874 original size:60 final size:61
Alignment explanation
Indices: 9286802--9286938 Score: 154
Period size: 60 Copynumber: 2.2 Consensus size: 61
9286792 AGGTTTTGAA
* * * *
9286802 AGTTTGGTTTTAAGGTTTAGACGGTTTTAGAGCTT-GAATTTTAGGAATTTTGGATTTT-GGG
1 AGTTTGGATTTAAGGTTTA-AAGGTTTGAGA-CTTCGAATTTTAGGAATTTGGGATTTTAGGG
* * **
9286863 -GTTTGGATTTAAGAGTTTAAAGGTTTGAGATTTCGGATTTTAGGGGTTTGGGATTTTAGGG
1 AGTTTGGATTTAAG-GTTTAAAGGTTTGAGACTTCGAATTTTAGGAATTTGGGATTTTAGGG
9286924 AGTTTGGATTTAAGG
1 AGTTTGGATTTAAGG
9286939 GATTTTGGAT
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
59 2 0.03
60 40 0.62
61 9 0.14
62 13 0.20
ACGTcount: A:0.22, C:0.02, G:0.32, T:0.44
Consensus pattern (61 bp):
AGTTTGGATTTAAGGTTTAAAGGTTTGAGACTTCGAATTTTAGGAATTTGGGATTTTAGGG
Found at i:9286960 original size:16 final size:16
Alignment explanation
Indices: 9286897--9286960 Score: 85
Period size: 16 Copynumber: 4.0 Consensus size: 16
9286887 TTGAGATTTC
*
9286897 GGATTTTAGGGGTTTG
1 GGATTTTAGGGGTTTT
9286913 GGATTTTAGGGAG-TTT
1 GGATTTTAGGG-GTTTT
* *
9286929 GGATTTAAGGGATTTT
1 GGATTTTAGGGGTTTT
9286945 GGATTTTAGGGGTTTT
1 GGATTTTAGGGGTTTT
9286961 AGAAACCTAG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
16 40 0.98
17 1 0.02
ACGTcount: A:0.17, C:0.00, G:0.38, T:0.45
Consensus pattern (16 bp):
GGATTTTAGGGGTTTT
Found at i:9288466 original size:17 final size:16
Alignment explanation
Indices: 9288446--9288477 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
9288436 TATTTTCTCT
9288446 TTTTTTTAATAATTATA
1 TTTTTTTAA-AATTATA
9288463 TTTTTTTAAAATTAT
1 TTTTTTTAAAATTAT
9288478 TAATATTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTTTTTAAAATTATA
Found at i:9288494 original size:21 final size:20
Alignment explanation
Indices: 9288455--9288503 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
9288445 TTTTTTTTAA
* *
9288455 TAATTATATTTTTTTAAAAT
1 TAATAATATTTTATTAAAAT
*
9288475 TATTAATATTATTATTAAAAT
1 TAATAATATT-TTATTAAAAT
9288496 TAATAATA
1 TAATAATA
9288504 GACTCGAACA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TAATAATATTTTATTAAAAT
Found at i:9291821 original size:2 final size:2
Alignment explanation
Indices: 9291814--9291847 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
9291804 TTGCTAAAAG
9291814 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9291848 CCTACCATCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9296262 original size:1 final size:1
Alignment explanation
Indices: 9296256--9296281 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
9296246 TATTCAATCA
9296256 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
9296282 CACACTTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:9298702 original size:3 final size:3
Alignment explanation
Indices: 9298694--9298718 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
9298684 TTTAAAATTT
9298694 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
9298719 CTTGGTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:9299793 original size:12 final size:12
Alignment explanation
Indices: 9299776--9299805 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
9299766 ATTTATCATA
9299776 TTTTTATTTGGT
1 TTTTTATTTGGT
*
9299788 TTTTTATTTTGT
1 TTTTTATTTGGT
9299800 TTTTTA
1 TTTTTA
9299806 AAAATTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.00, G:0.10, T:0.80
Consensus pattern (12 bp):
TTTTTATTTGGT
Found at i:9300502 original size:13 final size:13
Alignment explanation
Indices: 9300484--9300513 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
9300474 GGATGACTAT
9300484 TTTTTTATTTTGA
1 TTTTTTATTTTGA
*
9300497 TTTTTTATTTTGG
1 TTTTTTATTTTGA
9300510 TTTT
1 TTTT
9300514 AGGTATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.10, C:0.00, G:0.10, T:0.80
Consensus pattern (13 bp):
TTTTTTATTTTGA
Found at i:9300554 original size:31 final size:31
Alignment explanation
Indices: 9300497--9300573 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 31
9300487 TTTATTTTGA
9300497 TTTTTTATTTTGGTTTTAGGTATTTTTTAT-T
1 TTTTTTATTTT-GTTTTAGGTATTTTTTATGT
*
9300528 TTTTTGTATTTTGTTTATGGGT-TTTTTTATGGT
1 TTTTT-TATTTTGTTT-TAGGTATTTTTTAT-GT
9300561 TTTTTT-TTTTGTT
1 TTTTTTATTTTGTT
9300574 GGAAGGGTGT
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
31 24 0.59
32 11 0.27
33 6 0.15
ACGTcount: A:0.09, C:0.00, G:0.16, T:0.75
Consensus pattern (31 bp):
TTTTTTATTTTGTTTTAGGTATTTTTTATGT
Found at i:9301426 original size:3 final size:3
Alignment explanation
Indices: 9301420--9301475 Score: 103
Period size: 3 Copynumber: 18.7 Consensus size: 3
9301410 AAGTAAATAA
*
9301420 TAG TAG TAG TAG TAG TAG TAG TAG TAA TAG TAG TAG TAG TAG TAG TAG
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
9301468 TAG TAG TA
1 TAG TAG TA
9301476 ATAATAATAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.36, C:0.00, G:0.30, T:0.34
Consensus pattern (3 bp):
TAG
Found at i:9301480 original size:3 final size:3
Alignment explanation
Indices: 9301474--9301517 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
9301464 GTAGTAGTAG
9301474 TAA TAA TAA TAA TAA TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
9301518 ATGTGAAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:9301499 original size:20 final size:20
Alignment explanation
Indices: 9301474--9301513 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
9301464 GTAGTAGTAG
9301474 TAATAATAATAATAATAATA
1 TAATAATAATAATAATAATA
9301494 TAATAATAATAATAATAATA
1 TAATAATAATAATAATAATA
9301514 ATAAATGTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
TAATAATAATAATAATAATA
Found at i:9302285 original size:23 final size:23
Alignment explanation
Indices: 9302267--9302311 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
9302257 ACAATGCTAG
9302267 CCAATCTAAGCTTAAAATGCCAA
1 CCAATCTAAGCTTAAAATGCCAA
* * *
9302290 CCAATTTAGGCTTAAAGTGCCA
1 CCAATCTAAGCTTAAAATGCCA
9302312 GCTAATTTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.38, C:0.24, G:0.13, T:0.24
Consensus pattern (23 bp):
CCAATCTAAGCTTAAAATGCCAA
Found at i:9302336 original size:21 final size:23
Alignment explanation
Indices: 9302276--9302350 Score: 73
Period size: 23 Copynumber: 3.3 Consensus size: 23
9302266 GCCAATCTAA
* * *
9302276 GCTTAAAATGCCAACCAATTTAG
1 GCTTAAAGTGCCAGCTAATTTAG
9302299 GCTTAAAGTGCCAGCTAATTTAG
1 GCTTAAAGTGCCAGCTAATTTAG
** * *
9302322 GCTT-GGGTG-CAGCTAATGTGG
1 GCTTAAAGTGCCAGCTAATTTAG
9302343 GCTTAAAG
1 GCTTAAAG
9302351 CTAACTATGC
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
21 14 0.33
22 4 0.10
23 24 0.57
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.28
Consensus pattern (23 bp):
GCTTAAAGTGCCAGCTAATTTAG
Found at i:9302709 original size:26 final size:26
Alignment explanation
Indices: 9302668--9302730 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
9302658 TGCCATGGTG
* *
9302668 CAAATGCAAATGTCTTTCTTATGATA
1 CAAATGCAAATATCTTTCTCATGATA
*
9302694 CAAATGCGAATATCTTTCTCATGATA
1 CAAATGCAAATATCTTTCTCATGATA
* *
9302720 TAGATGCAAAT
1 CAAATGCAAAT
9302731 GATGCAATTA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (26 bp):
CAAATGCAAATATCTTTCTCATGATA
Found at i:9302881 original size:94 final size:88
Alignment explanation
Indices: 9302781--9302977 Score: 209
Period size: 88 Copynumber: 2.2 Consensus size: 88
9302771 GCGAATGTTT
* *
9302781 TTCTCATGACGCATATG-CAAGTGCAAATACAAGTGATG-AAATGTGAATAATATACATTTTTTT
1 TTCTCATGATGCATATGTC-AGTACAAATACAAGTGATGTAAATGTG---AATAT-C--TTTTTT
**
9302844 TTATTTTTTGTAGTATGTAGATCAAATATCC
59 TT-TTTTTTGTAACATGTAGATCAAATATCC
* * ** *
9302875 TTCTCATGATGCACATGTCAGTACGAATGTAAGTGATGTAAATGTGAATGTCTTTTTTTTTTTTT
1 TTCTCATGATGCATATGTCAGTACAAATACAAGTGATGTAAATGTGAATATCTTTTTTTTTTTTT
* *
9302940 TGTAACATGTAGATCAAATTTCT
66 TGTAACATGTAGATCAAATATCC
9302963 TTCTCATGATGCATA
1 TTCTCATGATGCATA
9302978 CGTAATTAAT
Statistics
Matches: 89, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
88 38 0.43
89 8 0.09
91 1 0.01
92 4 0.04
94 30 0.34
95 8 0.09
ACGTcount: A:0.30, C:0.12, G:0.16, T:0.42
Consensus pattern (88 bp):
TTCTCATGATGCATATGTCAGTACAAATACAAGTGATGTAAATGTGAATATCTTTTTTTTTTTTT
TGTAACATGTAGATCAAATATCC
Found at i:9311145 original size:7 final size:7
Alignment explanation
Indices: 9311133--9311169 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
9311123 AATAATTATT
9311133 ATATTTA
1 ATATTTA
9311140 ATATTTA
1 ATATTTA
9311147 ATATTTA
1 ATATTTA
9311154 AT-TGTTA
1 ATAT-TTA
9311161 AT-TTTA
1 ATATTTA
9311167 ATA
1 ATA
9311170 AAATTAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 6 0.21
7 22 0.79
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (7 bp):
ATATTTA
Found at i:9313267 original size:2 final size:2
Alignment explanation
Indices: 9313262--9313314 Score: 92
Period size: 2 Copynumber: 27.5 Consensus size: 2
9313252 ATATATATAT
9313262 AG AG AG AG AG -G AG AG AG AG AG AG AG AG AG A- AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
9313302 AG AG AG AG AG AG A
1 AG AG AG AG AG AG A
9313315 TGCAGGAGTA
Statistics
Matches: 49, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
1 2 0.04
2 47 0.96
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:9313288 original size:21 final size:21
Alignment explanation
Indices: 9313262--9313313 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
9313252 ATATATATAT
9313262 AGAGAGAGAGGAGAGAGAGAG
1 AGAGAGAGAGGAGAGAGAGAG
*
9313283 AGAGAGAGAAGAGAGAGAGAG
1 AGAGAGAGAGGAGAGAGAGAG
9313304 AGAGAGAGAG
1 AGAGAGAGAG
9313314 ATGCAGGAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (21 bp):
AGAGAGAGAGGAGAGAGAGAG
Found at i:9327252 original size:2 final size:2
Alignment explanation
Indices: 9327247--9327271 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
9327237 TTTTTTTTTC
9327247 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
9327272 ATGAAGCTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9333241 original size:22 final size:22
Alignment explanation
Indices: 9333194--9333241 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
9333184 ATTTGATTTT
* *
9333194 AATTTAATTAATCAATTGAATT
1 AATTTAATTAATCAATCGAATC
*
9333216 AATTTAATTCAATTAATCG-ATC
1 AATTTAATT-AATCAATCGAATC
9333238 AATT
1 AATT
9333242 ATTAATTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.44
Consensus pattern (22 bp):
AATTTAATTAATCAATCGAATC
Found at i:9333253 original size:29 final size:31
Alignment explanation
Indices: 9333204--9333262 Score: 86
Period size: 29 Copynumber: 1.9 Consensus size: 31
9333194 AATTTAATTA
9333204 ATCAATTGAATTAATTTAA-TTCAATTAATCG
1 ATCAATT-AATTAATTTAATTTCAATTAATCG
*
9333235 ATCAATT-ATTAATTTAATTTTAATTAAT
1 ATCAATTAATTAATTTAATTTCAATTAAT
9333263 TATTAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 10 0.38
30 9 0.35
31 7 0.27
ACGTcount: A:0.42, C:0.07, G:0.03, T:0.47
Consensus pattern (31 bp):
ATCAATTAATTAATTTAATTTCAATTAATCG
Found at i:9333913 original size:12 final size:12
Alignment explanation
Indices: 9333878--9333920 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
9333868 ATTTTATTGA
9333878 TAAAAAAATTTT
1 TAAAAAAATTTT
*
9333890 GAATAAAAATTTT
1 TAA-AAAAATTTT
*
9333903 TAAAAATATTTTT
1 TAAAAA-AATTTT
9333916 TAAAA
1 TAAAA
9333921 TTATTTATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
12 5 0.19
13 21 0.81
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (12 bp):
TAAAAAAATTTT
Found at i:9336990 original size:22 final size:22
Alignment explanation
Indices: 9336948--9336988 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
9336938 ATTTAATAAA
*
9336948 AATATTATATTTATATTAAATG
1 AATATTATATTTAAATTAAATG
9336970 AATATTATA-TTAAATTAAA
1 AATATTATATTTAAATTAAA
9336989 ATTATTACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (22 bp):
AATATTATATTTAAATTAAATG
Found at i:9336992 original size:16 final size:16
Alignment explanation
Indices: 9336958--9336993 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
9336948 AATATTATAT
*
9336958 TTATATTAAATGAATA
1 TTATATTAAATGAAAA
*
9336974 TTATATTAAATTAAAA
1 TTATATTAAATGAAAA
9336990 TTAT
1 TTAT
9336994 TACATTAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
TTATATTAAATGAAAA
Found at i:9337478 original size:42 final size:45
Alignment explanation
Indices: 9337423--9337532 Score: 126
Period size: 41 Copynumber: 2.5 Consensus size: 45
9337413 TATAATATTC
* *
9337423 ATAAA-ATATTATTTTTAATATAAATT-ATATCTTA-ATT-ATAT
1 ATAAATATAATATTTTTAATATAAATTAATATCTTATATTAAAAT
9337464 ATAAATATAATATTTTT-ATA-AAATTAATATCTTATATTAAAAT
1 ATAAATATAATATTTTTAATATAAATTAATATCTTATATTAAAAT
9337507 ATTAAATAATAAT-TTTATTAATATAA
1 A-TAAAT-ATAATATTT-TTAATATAA
9337533 TACATATATA
Statistics
Matches: 58, Mismatches: 2, Indels: 12
0.81 0.03 0.17
Matches are distributed among these distances:
40 5 0.09
41 16 0.28
42 13 0.22
43 4 0.07
44 8 0.14
45 7 0.12
46 3 0.05
47 2 0.03
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (45 bp):
ATAAATATAATATTTTTAATATAAATTAATATCTTATATTAAAAT
Found at i:9337506 original size:19 final size:19
Alignment explanation
Indices: 9337444--9337506 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 19
9337434 TTTTTAATAT
9337444 AAATT-ATATCTTAATTATATA
1 AAATTAATATCTT-A-TAT-TA
*
9337465 TAAATATAATAT-TTTTA-TA
1 -AAAT-TAATATCTTATATTA
9337484 AAATTAATATCTTATATTA
1 AAATTAATATCTTATATTA
9337503 AAAT
1 AAAT
9337507 ATTAAATAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 11
0.73 0.04 0.23
Matches are distributed among these distances:
17 6 0.17
18 8 0.23
19 8 0.23
21 2 0.06
22 4 0.11
23 3 0.09
24 4 0.11
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (19 bp):
AAATTAATATCTTATATTA
Found at i:9337532 original size:48 final size:42
Alignment explanation
Indices: 9337426--9337532 Score: 105
Period size: 40 Copynumber: 2.5 Consensus size: 42
9337416 AATATTCATA
* *
9337426 AAATATTAT-TTTTAATAT-AAATTATATCTTAATTATATAT
1 AAATATAATATTTTAATATAAAATTATATCTTAATTAAATAT
9337466 AAATATAATATTTT--TATAAAATTAATATCTTATATTAAAATATT
1 AAATATAATATTTTAATATAAAATT-ATATCTTA-ATT-AAATA-T
*
9337510 AAATAATAATTTTATTAATATAA
1 AAAT-ATAATATT-TTAATATAA
9337533 TACATATATA
Statistics
Matches: 54, Mismatches: 3, Indels: 12
0.78 0.04 0.17
Matches are distributed among these distances:
39 3 0.06
40 13 0.24
41 12 0.22
42 3 0.06
43 4 0.07
44 5 0.09
45 7 0.13
46 2 0.04
48 5 0.09
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.49
Consensus pattern (42 bp):
AAATATAATATTTTAATATAAAATTATATCTTAATTAAATAT
Found at i:9340014 original size:29 final size:30
Alignment explanation
Indices: 9339982--9340039 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
9339972 AAAAAAATCT
9339982 AAACTAAATCATAA-TAAAACAATTAATTC
1 AAACTAAATCATAATTAAAACAATTAATTC
* * * *
9340011 AAACTATATGATAATTAATAGAATTAATT
1 AAACTAAATCATAATTAAAACAATTAATT
9340040 ACATTTCGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 12 0.50
30 12 0.50
ACGTcount: A:0.55, C:0.09, G:0.03, T:0.33
Consensus pattern (30 bp):
AAACTAAATCATAATTAAAACAATTAATTC
Found at i:9340187 original size:2 final size:2
Alignment explanation
Indices: 9340167--9340225 Score: 91
Period size: 2 Copynumber: 29.5 Consensus size: 2
9340157 ATGAAAGAAA
* * *
9340167 AT AT AT GT AT GT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9340209 AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT A
9340226 ACTTGATGTC
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (2 bp):
AT
Found at i:9344223 original size:22 final size:22
Alignment explanation
Indices: 9344195--9344242 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
9344185 CAAGGATCCA
9344195 GCCACCCAAATTATGATGTAGG
1 GCCACCCAAATTATGATGTAGG
9344217 GCCACCCAAATTATGATGTAGG
1 GCCACCCAAATTATGATGTAGG
9344239 GCCA
1 GCCA
9344243 TGGGCCTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.21
Consensus pattern (22 bp):
GCCACCCAAATTATGATGTAGG
Found at i:9350560 original size:221 final size:221
Alignment explanation
Indices: 9350139--9350569 Score: 558
Period size: 221 Copynumber: 2.0 Consensus size: 221
9350129 TGTGTGATGA
* * * **** *
9350139 TATATTGAAGGTATTTTATAGTAGAAAACGCCTTTAATAATTTTTAAAATTTTTTGAGAAAAAAT
1 TATATTGAAGGCATGTTATAGTAGAAAACACCTTTAATAATGCCCAAAATTTTTAGAGAAAAAAT
* *
9350204 ATTAAAGGCGTCTATTATTAACAAATGCCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGT
66 ATTAAAGGCGTCTATTATTAACAAATACCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGA
* * * * * *
9350269 ATGTGCTTTTTTAAATAAATGCCTTCTATAACAATCGTGCTATATTGAAGGTGTTTTATAATAAA
131 AGGTGCATTTTTAAATAAATACCTTCTATAACAATCATGCTATATTAAAGGTATTTTATAATAAA
*
9350334 AGATGCCTTTAATAATCCCATCGTGG
196 AGATGCCGTTAATAATCCCATCGTGG
** * **
9350360 TATATTGAAGGCATGTTATAGTAGAAGTCATCTTTAATAATGCCCAAAATTTTTAGAGGGAAAAT
1 TATATTGAAGGCATGTTATAGTAGAAAACACCTTTAATAATGCCCAAAATTTTTAGAGAAAAAAT
* * *
9350425 ATTAAAGGCGTCTGTTATTAACAAATACCTTCCGTAATGGATTACTAAGTTTAATGGTATATTGA
66 ATTAAAGGCGTCTATTATTAACAAATACCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGA
* * * * * * *
9350490 AGGTGCATTTTTGAATATATACCTTTTATAACCATCATGGTATATTAAAGGTATTTTACT-GTAG
131 AGGTGCATTTTTAAATAAATACCTTCTATAACAATCATGCTATATTAAAGGTATTTTA-TAATAA
9350554 AAGATGCCGTTAATAA
195 AAGATGCCGTTAATAA
9350570 GTAATAATAG
Statistics
Matches: 177, Mismatches: 32, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
221 176 0.99
222 1 0.01
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.38
Consensus pattern (221 bp):
TATATTGAAGGCATGTTATAGTAGAAAACACCTTTAATAATGCCCAAAATTTTTAGAGAAAAAAT
ATTAAAGGCGTCTATTATTAACAAATACCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGA
AGGTGCATTTTTAAATAAATACCTTCTATAACAATCATGCTATATTAAAGGTATTTTATAATAAA
AGATGCCGTTAATAATCCCATCGTGG
Found at i:9360289 original size:20 final size:20
Alignment explanation
Indices: 9360264--9360306 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
9360254 TCTTACATTA
*
9360264 TTTATTATTTATTATTTATT
1 TTTATTATTTATTATATATT
*
9360284 TTTATTATTTATTGTATATT
1 TTTATTATTTATTATATATT
9360304 TTT
1 TTT
9360307 CTTTATTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (20 bp):
TTTATTATTTATTATATATT
Found at i:9360316 original size:7 final size:7
Alignment explanation
Indices: 9360260--9360296 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
9360250 CTTCTCTTAC
9360260 ATTATTT
1 ATTATTT
9360267 ATTATTT
1 ATTATTT
9360274 ATTATTT
1 ATTATTT
9360281 ATT-TTT
1 ATTATTT
9360287 ATTATTT
1 ATTATTT
9360294 ATT
1 ATT
9360297 GTATATTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 6 0.21
7 23 0.79
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
ATTATTT
Found at i:9361069 original size:1 final size:1
Alignment explanation
Indices: 9361063--9361097 Score: 70
Period size: 1 Copynumber: 35.0 Consensus size: 1
9361053 TATTCTTGGG
9361063 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
9361098 CAGATTTTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:9362162 original size:138 final size:135
Alignment explanation
Indices: 9361923--9362302 Score: 514
Period size: 138 Copynumber: 2.8 Consensus size: 135
9361913 GAAAGAATGT
* * *
9361923 AAATTCAAACTTTAAACTC-GTATGTCACCACCAAGTGATTTT-AAATATGTCTTGGATATCACC
1 AAATTCAAACTTTAAACTCAG-ATATCACTACCAAGTGATTTTGAAA-ATATCTTGGATATCACC
* * * *
9361986 ACCAAGAAAATGAAATTCATACTTTAATTCTCAAATATCACTATCGAGAAAATGCAAATGTAAAG
64 ACCAAGAAAATGAAATTCATACTTTAATTCTTAGATATCACCACCGAGAAAATGCAAATGTAAAG
9362051 AAAAAATGTAA
129 -AAAAA--T-A
**
9362062 AAATTCAAACTTTAAACTCAGATATCACTACCAAGTGATTTTGAAAATATCTT-GATATCACTGC
1 AAATTCAAACTTTAAACTCAGATATCACTACCAAGTGATTTTGAAAATATCTTGGATATCACCAC
* * *
9362126 TAAGAAAATGAAATTCATATTTTAATTCTTAGATATCACCACCGAGAAAATGCAAATGTAGAGAA
66 CAAGAAAATGAAATTCATACTTTAATTCTTAGATATCACCACCGAGAAAATGCAAATGTAAAGAA
*
9362191 AAATC
131 AAATA
* * * *
9362196 AAATTCAAACTTTAAACTTAGATATCACTATCGAGTAATTTTGAAAATATCTTGGATATCACCAC
1 AAATTCAAACTTTAAACTCAGATATCACTACCAAGTGATTTTGAAAATATCTTGGATATCACCAC
*
9362261 CAAGAAAATGAAAATTCATACTTTAATACTTAGATATCACCA
66 CAAGAAAATG-AAATTCATACTTTAATTCTTAGATATCACCA
9362303 TTAATAAAAT
Statistics
Matches: 215, Mismatches: 22, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
134 49 0.23
135 19 0.09
136 29 0.13
137 5 0.02
138 65 0.30
139 44 0.20
140 4 0.02
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.30
Consensus pattern (135 bp):
AAATTCAAACTTTAAACTCAGATATCACTACCAAGTGATTTTGAAAATATCTTGGATATCACCAC
CAAGAAAATGAAATTCATACTTTAATTCTTAGATATCACCACCGAGAAAATGCAAATGTAAAGAA
AAATA
Found at i:9362327 original size:42 final size:43
Alignment explanation
Indices: 9362241--9362345 Score: 140
Period size: 42 Copynumber: 2.4 Consensus size: 43
9362231 TAATTTTGAA
*
9362241 AATATCTTGGATATCACCACCAAGAAAATGAAAATTCATACTTT
1 AATA-CTTAGATATCACCACCAAGAAAATGAAAATTCATACTTT
** *
9362285 AATACTTAGATATCACCATTAATAAAAT-AAAATTCATACTTT
1 AATACTTAGATATCACCACCAAGAAAATGAAAATTCATACTTT
* *
9362327 AATACTCATATATCACCAC
1 AATACTTAGATATCACCAC
9362346 TGAAAAAAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 30 0.56
43 20 0.37
44 4 0.07
ACGTcount: A:0.45, C:0.19, G:0.05, T:0.31
Consensus pattern (43 bp):
AATACTTAGATATCACCACCAAGAAAATGAAAATTCATACTTT
Found at i:9362420 original size:181 final size:177
Alignment explanation
Indices: 9362130--9362482 Score: 494
Period size: 181 Copynumber: 2.0 Consensus size: 177
9362120 CACTGCTAAG
* * * * *
9362130 AAAATGAAATTCATATTTTAATTCTTAGATATCACCACCGAGAAAATGCAAATGTAGAGAAAAAT
1 AAAATAAAATTCATACTTTAATACTCAGATATCACCACCGAAAAAATGCAAATGTAGAGAAAAAT
* * * *
9362195 CAAATTCAAACTTTAAACTTAGATATCACTATCGAGTAATTTTGAAAATATCTTGG-ATATCACC
66 CAAATTCAAACTTTAAACTCAAATATCACCATCGAGTAATTTTGAAAATATC-AGGAATATCACC
*
9362259 ACCAAGAAAATGAAAATTCATACTTTAATACTTAGATATCACCATTAAT
130 ACCAAGAAAATG-AAATTCATACTTTAATACTGAGATATCACCATTAAT
* *
9362308 AAAATAAAATTCATACTTTAATACTCATATATCACCACTGAAAAAAATGCAAATGTAGAGAAAAA
1 AAAATAAAATTCATACTTTAATACTCAGATATCACCACCG-AAAAAATGCAAATGTAGAG-AAAA
* *
9362373 ATACAAATTCAAACTTTAAACTCAAATATCACCA-CTGAGTGATTTTGAAAATGTCAGGAATATC
64 AT-CAAATTCAAACTTTAAACTCAAATATCACCATC-GAGTAATTTTGAAAATATCAGGAATATC
* *
9362437 ACCATCAAGAAAATGAAATTCATATTTTAATACTGAGATATCACCA
127 ACCACCAAGAAAATGAAATTCATACTTTAATACTGAGATATCACCA
9362483 CCGAGTGATT
Statistics
Matches: 154, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
178 34 0.22
179 18 0.12
180 38 0.25
181 64 0.42
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.29
Consensus pattern (177 bp):
AAAATAAAATTCATACTTTAATACTCAGATATCACCACCGAAAAAATGCAAATGTAGAGAAAAAT
CAAATTCAAACTTTAAACTCAAATATCACCATCGAGTAATTTTGAAAATATCAGGAATATCACCA
CCAAGAAAATGAAATTCATACTTTAATACTGAGATATCACCATTAAT
Found at i:9362480 original size:76 final size:76
Alignment explanation
Indices: 9362368--9362546 Score: 252
Period size: 76 Copynumber: 2.4 Consensus size: 76
9362358 AAATGTAGAG
* * * *
9362368 AAAAAATACAAATTCAAACTTTAA-ACTCAAATATCACCACTGAGTGATTTTGAAAATGTCAGGA
1 AAAAAATA-AAATTCATACTTTAATACTGAGATATCACCACCGAGTGATTTTGAAAATGTCAGGA
*
9362432 ATATCACCATCA
65 ATATCAACATCA
* * * **
9362444 AGAAAATGAAATTCATATTTTAATACTGAGATATCACCACCGAGTGATTTTGAAAATGTCTTGAA
1 AAAAAATAAAATTCATACTTTAATACTGAGATATCACCACCGAGTGATTTTGAAAATGTCAGGAA
9362509 TATCAACATCA
66 TATCAACATCA
9362520 AAAAAATAAAATTCATACTTTAATACT
1 AAAAAATAAAATTCATACTTTAATACT
9362547 CTATATCATC
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
75 13 0.15
76 76 0.85
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.30
Consensus pattern (76 bp):
AAAAAATAAAATTCATACTTTAATACTGAGATATCACCACCGAGTGATTTTGAAAATGTCAGGAA
TATCAACATCA
Found at i:9362709 original size:40 final size:39
Alignment explanation
Indices: 9362656--9362731 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 39
9362646 ATCACTATCA
* * *
9362656 AGAAATTGCAAATTCATACTTTAATACTCTGATATCATTG
1 AGAAAATGCAAATTCAAACTTTAA-ACTCGGATATCATTG
*
9362696 AGAAAATGTAAATTCAAACTTTAAACTCGGATATCA
1 AGAAAATGCAAATTCAAACTTTAAACTCGGATATCA
9362732 CCACCAAGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
39 11 0.34
40 21 0.66
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.33
Consensus pattern (39 bp):
AGAAAATGCAAATTCAAACTTTAAACTCGGATATCATTG
Found at i:9363017 original size:27 final size:27
Alignment explanation
Indices: 9362986--9363038 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
9362976 CACCACTATG
9362986 ACGCAAATGTCTTCTT-TTAAAATGATA
1 ACGCAAATGTCTT-TTCTTAAAATGATA
*
9363013 ACGCAATTGTCTTTTCTTAAAATGAT
1 ACGCAAATGTCTTTTCTTAAAATGAT
9363039 GCACATGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 2 0.08
27 22 0.92
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40
Consensus pattern (27 bp):
ACGCAAATGTCTTTTCTTAAAATGATA
Found at i:9363459 original size:44 final size:44
Alignment explanation
Indices: 9363409--9363496 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
9363399 ATATTGAAGC
9363409 AAATAAGCCATTGAACTATGGTGAAACTCAATTGATTAAACATA
1 AAATAAGCCATTGAACTATGGTGAAACTCAATTGATTAAACATA
* *
9363453 AAATAAGCCATTGAACTATTGTGAAACTTAATTGATTAAACATA
1 AAATAAGCCATTGAACTATGGTGAAACTCAATTGATTAAACATA
9363497 CTTTTGTATT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.30
Consensus pattern (44 bp):
AAATAAGCCATTGAACTATGGTGAAACTCAATTGATTAAACATA
Found at i:9371360 original size:13 final size:13
Alignment explanation
Indices: 9371341--9371373 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
9371331 AAGCATGATG
9371341 ATGAAATGTCATT
1 ATGAAATGTCATT
*
9371354 TTGAAATGTCATT
1 ATGAAATGTCATT
9371367 ATGAAAT
1 ATGAAAT
9371374 CGGGTTCTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.15, T:0.39
Consensus pattern (13 bp):
ATGAAATGTCATT
Found at i:9371820 original size:8 final size:8
Alignment explanation
Indices: 9371807--9371944 Score: 53
Period size: 8 Copynumber: 17.9 Consensus size: 8
9371797 AGGGTTGACA
9371807 GTTTTAAG
1 GTTTTAAG
*
9371815 GTTTTAAA
1 GTTTTAAG
*
9371823 GTTTTGA-
1 GTTTTAAG
9371830 GTTTT-AG
1 GTTTTAAG
*
9371837 GATTTTGAG
1 G-TTTTAAG
9371846 GTTTT-AG
1 GTTTTAAG
*
9371853 GATTTGAA-
1 G-TTTTAAG
9371861 GTTTTAAG
1 GTTTTAAG
* *
9371869 ATTTTAGG
1 GTTTTAAG
9371877 GTTTTGAA-
1 GTTTT-AAG
*
9371885 -TTTTAGG
1 GTTTTAAG
9371892 GTTTT-AG
1 GTTTTAAG
* *
9371899 ATTTT-GG
1 GTTTTAAG
**
9371906 AGTTTGGA-
1 -GTTTTAAG
9371914 GTTTT-AG
1 GTTTTAAG
9371921 GATTTTAAG
1 G-TTTTAAG
*
9371930 GTTTTAGG
1 GTTTTAAG
9371938 GTTTTAA
1 GTTTTAA
9371945 ATTTTTTCTT
Statistics
Matches: 98, Mismatches: 18, Indels: 28
0.68 0.12 0.19
Matches are distributed among these distances:
6 3 0.03
7 29 0.30
8 58 0.59
9 8 0.08
ACGTcount: A:0.22, C:0.00, G:0.27, T:0.51
Consensus pattern (8 bp):
GTTTTAAG
Found at i:9371842 original size:15 final size:16
Alignment explanation
Indices: 9371824--9371943 Score: 78
Period size: 15 Copynumber: 7.8 Consensus size: 16
9371814 GGTTTTAAAG
9371824 TTTT-GAGTTTTAGGA
1 TTTTAGAGTTTTAGGA
9371839 TTTT-GAGGTTTTAGGA
1 TTTTAGA-GTTTTAGGA
* *
9371855 TTTGA-AGTTTTAAGA
1 TTTTAGAGTTTTAGGA
* *
9371870 TTTTAGGGTTTT-GAA
1 TTTTAGAGTTTTAGGA
*
9371885 TTTTAGGGTTTTA-GA
1 TTTTAGAGTTTTAGGA
*
9371900 TTTTGGAG-TTT-GGA
1 TTTTAGAGTTTTAGGA
9371914 GTTTTAG-GATTTTAAGG-
1 -TTTTAGAG-TTTT-AGGA
*
9371931 TTTTAGGGTTTTA
1 TTTTAGAGTTTTA
9371944 AATTTTTTCT
Statistics
Matches: 84, Mismatches: 10, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
14 6 0.07
15 44 0.52
16 31 0.37
17 1 0.01
18 2 0.02
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.52
Consensus pattern (16 bp):
TTTTAGAGTTTTAGGA
Found at i:9371851 original size:31 final size:29
Alignment explanation
Indices: 9371808--9371904 Score: 81
Period size: 31 Copynumber: 3.2 Consensus size: 29
9371798 GGGTTGACAG
*
9371808 TTTTAAGGTTTTAAAGTTTTGAGTTTTAGGA
1 TTTTGAGGTTTT-AAGTTTTGAGTTTTA-GA
* *
9371839 TTTTGAGGTTTTAGGATTTGAAGTTTTAAGA
1 TTTTGAGGTTTTAAGTTTTG-AGTTTT-AGA
*
9371870 TTTT-AGGGTTTTGAA-TTTTAGGGTTTTAGA
1 TTTTGA-GGTTTT-AAGTTTT-GAGTTTTAGA
9371900 TTTTG
1 TTTTG
9371905 GAGTTTGGAG
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
30 14 0.26
31 37 0.69
32 3 0.06
ACGTcount: A:0.23, C:0.00, G:0.25, T:0.53
Consensus pattern (29 bp):
TTTTGAGGTTTTAAGTTTTGAGTTTTAGA
Found at i:9371910 original size:46 final size:45
Alignment explanation
Indices: 9371845--9371949 Score: 115
Period size: 46 Copynumber: 2.3 Consensus size: 45
9371835 AGGATTTTGA
* *
9371845 GGTTTTAGGA-TTTGAAGTTTTAAGATTTTAGGGTTTTGAA-TTTTAG
1 GGTTTTA-GATTTTGAAGTTTGAAG-TTTTAGGATTTT-AAGTTTTAG
* *
9371891 GGTTTTAGATTTTGGAGTTTGGAGTTTTAGGATTTTAAGGTTTTAG
1 GGTTTTAGATTTTGAAGTTTGAAGTTTTAGGATTTTAA-GTTTTAG
*
9371937 GGTTTTAAATTTT
1 GGTTTTAGATTTT
9371950 TTCTTATGAG
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
44 2 0.04
45 13 0.25
46 36 0.71
ACGTcount: A:0.22, C:0.00, G:0.27, T:0.51
Consensus pattern (45 bp):
GGTTTTAGATTTTGAAGTTTGAAGTTTTAGGATTTTAAGTTTTAG
Found at i:9371950 original size:16 final size:15
Alignment explanation
Indices: 9371861--9371949 Score: 81
Period size: 15 Copynumber: 5.8 Consensus size: 15
9371851 AGGATTTGAA
9371861 GTTTTAAGATTTTAGG
1 GTTTTAA-ATTTTAGG
*
9371877 GTTTTGAATTTTAGG
1 GTTTTAAATTTTAGG
*
9371892 GTTTTAGATTTT-GG
1 GTTTTAAATTTTAGG
** *
9371906 AGTTTGGAGTTTTAGG
1 -GTTTTAAATTTTAGG
* *
9371922 ATTTTAAGGTTTTAGG
1 GTTTTAA-ATTTTAGG
9371938 GTTTTAAATTTT
1 GTTTTAAATTTT
9371950 TTCTTATGAG
Statistics
Matches: 58, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
14 2 0.03
15 34 0.59
16 22 0.38
ACGTcount: A:0.21, C:0.00, G:0.26, T:0.53
Consensus pattern (15 bp):
GTTTTAAATTTTAGG
Found at i:9373559 original size:35 final size:35
Alignment explanation
Indices: 9373520--9373623 Score: 104
Period size: 35 Copynumber: 3.0 Consensus size: 35
9373510 AATGAGCCAC
*
9373520 AAGTCAAAAAATAAAGAAGATTGGGATTGAACCAT
1 AAGTCAAAAAATAAAGAAGATTGGGACTGAACCAT
* ** *
9373555 AAGTCAAAGAATAAA-AATGACCGGGACT-AAGCCGT
1 AAGTCAAAAAATAAAGAA-GATTGGGACTGAA-CCAT
* * *
9373590 AAGTTAAGAAATAAAGATGATTGGGACTGAACCA
1 AAGTCAAAAAATAAAGAAGATTGGGACTGAACCA
9373624 CCAATCGCAA
Statistics
Matches: 53, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
34 4 0.08
35 46 0.87
36 3 0.06
ACGTcount: A:0.48, C:0.12, G:0.22, T:0.18
Consensus pattern (35 bp):
AAGTCAAAAAATAAAGAAGATTGGGACTGAACCAT
Found at i:9373986 original size:70 final size:69
Alignment explanation
Indices: 9373875--9374074 Score: 190
Period size: 70 Copynumber: 2.9 Consensus size: 69
9373865 CCGTAAGTTA
* ** * * * * *
9373875 AGAAAT-AAAACAACTAGGGTTGTATCACAAATCGAAAAGTAAAGGTGACGAAGATTGAGCCATA
1 AGAAATAAAAACAACTAGGATTAAACCACAAGTCAAAAAGTAAAGGTGACG-AGACTGAGCCACA
*
9373939 AGTTG
65 AGTCG
** *
9373944 -GTAAATAAAAATGACTAGGA-TAGAACCACAAGTCAAAGAGTAAAGGTGATCGAGACTGAGCCA
1 AG-AAATAAAAACAACTAGGATTA-AACCACAAGTCAAAAAGTAAAGGTGA-CGAGACTGAGCCA
9374007 CAAGTCG
63 CAAGTCG
* * * *
9374014 AGAAATAAAAACAATTAGGATTAAATCACAAGTCAAAAAGTAAAGATGACTAGGACTGAGC
1 AGAAATAAAAACAACTAGGATTAAACCACAAGTCAAAAAGTAAAGGTGACGA-GACTGAGC
9374075 TGTACATTGA
Statistics
Matches: 105, Mismatches: 19, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
68 1 0.01
69 7 0.07
70 92 0.88
71 5 0.05
ACGTcount: A:0.47, C:0.13, G:0.22, T:0.18
Consensus pattern (69 bp):
AGAAATAAAAACAACTAGGATTAAACCACAAGTCAAAAAGTAAAGGTGACGAGACTGAGCCACAA
GTCG
Found at i:9374303 original size:70 final size:69
Alignment explanation
Indices: 9374172--9374414 Score: 206
Period size: 70 Copynumber: 3.5 Consensus size: 69
9374162 AAAACGACCG
* * ** * * * * *
9374172 AGATTGAACCACAAGTCAAAGAGTAAAGATGATTGAGACTAAAGTGTAAATCAATAGATAAAATT
1 AGATTGAATCACAAGTCAAAGAATAAAGATGACCGAGACT-AAGTGTAAGTTAAGAAATAAAAAT
9374237 AATTC
65 AATTC
* *
9374242 AGATTGAATCACAAGTCAAAGAATAAAGATGACCAAGACTAAGTTGTAAGTTAAGAAATAAAAAC
1 AGATTGAATCACAAGTCAAAGAATAAAGATGACCGAGACTAAG-TGTAAGTTAAGAAATAAAAAT
* *
9374307 GATTG
65 AATTC
* * * * * * *
9374312 GGATTGAATTC-CAAATTAAAGAGTAAAGGTGACCGAGACTAAGCTGCAAGTTAGGAAATAAAAA
1 AGATTGAA-TCACAAGTCAAAGAATAAAGATGACCGAGACTAAG-TGTAAGTTAAGAAATAAAAA
9374376 TAA-TC
64 TAATTC
*
9374381 GAGATTGAA-CTATAAGTCAAA-AAGTAAAGATGAC
1 -AGATTGAATC-ACAAGTCAAAGAA-TAAAGATGAC
9374415 TGGGACTGAA
Statistics
Matches: 136, Mismatches: 31, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
68 1 0.01
69 5 0.04
70 128 0.94
71 2 0.01
ACGTcount: A:0.48, C:0.10, G:0.19, T:0.22
Consensus pattern (69 bp):
AGATTGAATCACAAGTCAAAGAATAAAGATGACCGAGACTAAGTGTAAGTTAAGAAATAAAAATA
ATTC
Found at i:9374476 original size:210 final size:211
Alignment explanation
Indices: 9374170--9374583 Score: 465
Period size: 210 Copynumber: 2.0 Consensus size: 211
9374160 TAAAAACGAC
* * * * *
9374170 CGAGATTGAACCACAAGTCAAAGAGTAAAGATGATTGAGACTAAAGTGTAAATCAATAGATAAAA
1 CGAGATTGAACCACAAGTCAAAAAGTAAAGATGACTGAGACTAAACTGCAAATCAAGAGATAAAA
* **** *
9374235 TTAATTCAGATTGAATCACAAGTCAAAGAATAAAGATGACCAAGACTAAGTTGTAAGTTAAGAAA
66 TTAATTCAGACTGAATCACAAGTCAAAGAATAAAGATGACCAAGACTAAACAATAAGTCAAGAAA
* * * * * *
9374300 TAAAAACGATTG-GGATTGAATTCCAAATTAAAGAGTAAAGGTGACCGAGACTAAGCTGCAAG-T
131 TAAAAAAGACTGAGG-TTGAAATCCAAATCAAAGAGTAAAGATAACCGAGACTAAGCTGCAAGTT
9374363 TAGGAAATAAAAATAAT
195 TAGGAAATAAAAATAAT
* * * * *
9374380 CGAGATTGAACTATAAGTCAAAAAGTAAAGATGACTGGGACTGAACTGCAAATGAAGAGATAAAA
1 CGAGATTGAACCACAAGTCAAAAAGTAAAGATGACTGAGACTAAACTGCAAATCAAGAGATAAAA
* * ** ** * **
9374445 TTGATTGAGACTGAA-CATTGAGTTGAAGAATAAAGATGATCGGGACTAAACAATAAGTCAAGAA
66 TTAATTCAGACTGAATCA-CAAGTCAAAGAATAAAGATGACCAAGACTAAACAATAAGTCAAGAA
* * ** *
9374509 ATAAAAAAGGCTGAGGTTGAAATGCAAATCAAAGAGTAAAGATAATTGGGACTAAGCTGCAAGTT
130 ATAAAAAAGACTGAGGTTGAAATCCAAATCAAAGAGTAAAGATAACCGAGACTAAGCTGCAAGTT
9374574 TAGGAAATAA
195 TAGGAAATAA
9374584 GAACGACAAG
Statistics
Matches: 165, Mismatches: 36, Indels: 5
0.80 0.17 0.02
Matches are distributed among these distances:
209 2 0.01
210 150 0.91
211 13 0.08
ACGTcount: A:0.47, C:0.10, G:0.21, T:0.22
Consensus pattern (211 bp):
CGAGATTGAACCACAAGTCAAAAAGTAAAGATGACTGAGACTAAACTGCAAATCAAGAGATAAAA
TTAATTCAGACTGAATCACAAGTCAAAGAATAAAGATGACCAAGACTAAACAATAAGTCAAGAAA
TAAAAAAGACTGAGGTTGAAATCCAAATCAAAGAGTAAAGATAACCGAGACTAAGCTGCAAGTTT
AGGAAATAAAAATAAT
Found at i:9374681 original size:35 final size:35
Alignment explanation
Indices: 9374615--9374681 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 35
9374605 AAGTTAAGAG
* ** * *
9374615 TAAAGATGACTAAGATTGAGTTGCAAGTCAAAAAA
1 TAAAAATGACTAAGATTGAACTACAAATCAAAAAA
9374650 TAAAAATGACTAAGATTGAACTACAAATCAAA
1 TAAAAATGACTAAGATTGAACTACAAATCAAA
9374682 GAGTAAAGAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 27 1.00
ACGTcount: A:0.52, C:0.10, G:0.15, T:0.22
Consensus pattern (35 bp):
TAAAAATGACTAAGATTGAACTACAAATCAAAAAA
Found at i:9375184 original size:25 final size:25
Alignment explanation
Indices: 9375156--9375204 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
9375146 CCTTTTCAAG
9375156 TTTTTAGTTTGAGTTTTTTT-TTTTC
1 TTTTTAGTTT-AGTTTTTTTGTTTTC
* *
9375181 TTTTTTGTTTTGTTTTTTTGTTTT
1 TTTTTAGTTTAGTTTTTTTGTTTT
9375205 TTTCATTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.04, C:0.02, G:0.12, T:0.82
Consensus pattern (25 bp):
TTTTTAGTTTAGTTTTTTTGTTTTC
Found at i:9375749 original size:23 final size:23
Alignment explanation
Indices: 9375723--9375785 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 23
9375713 AATTAGTCTA
*
9375723 GGCTTAAAGTGCCAGCTAATCTG
1 GGCTTAAAGTGCCAGCTAAACTG
** **
9375746 GGCTT-GGGTGTAAGCTAAACTG
1 GGCTTAAAGTGCCAGCTAAACTG
*
9375768 GGTTTAAAGTGCCAGCTA
1 GGCTTAAAGTGCCAGCTA
9375786 CTGTAGGCTT
Statistics
Matches: 29, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
22 16 0.55
23 13 0.45
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.27
Consensus pattern (23 bp):
GGCTTAAAGTGCCAGCTAAACTG
Found at i:9378236 original size:11 final size:11
Alignment explanation
Indices: 9378191--9378244 Score: 51
Period size: 10 Copynumber: 5.1 Consensus size: 11
9378181 CAATTAATCA
*
9378191 TTTTTTTACTT
1 TTTTTTTGCTT
9378202 TTTCTTTTG-TT
1 TTT-TTTTGCTT
* *
9378213 TATGTTTGCTT
1 TTTTTTTGCTT
9378224 TTTTTTTG-TT
1 TTTTTTTGCTT
9378234 TTTTTTT-CTT
1 TTTTTTTGCTT
9378244 T
1 T
9378245 ATAGACATCC
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 16 0.46
11 15 0.43
12 4 0.11
ACGTcount: A:0.04, C:0.07, G:0.07, T:0.81
Consensus pattern (11 bp):
TTTTTTTGCTT
Found at i:9382621 original size:8 final size:8
Alignment explanation
Indices: 9382608--9382882 Score: 70
Period size: 8 Copynumber: 35.1 Consensus size: 8
9382598 GGGTCATGTC
9382608 TTAGGGTT
1 TTAGGGTT
9382616 TTAGGGTT
1 TTAGGGTT
* *
9382624 TCA-AGTT
1 TTAGGGTT
*
9382631 CTTAGGATT
1 -TTAGGGTT
*
9382640 TTGAGGTTT
1 TT-AGGGTT
*
9382649 TTAGAGTT
1 TTAGGGTT
* **
9382657 TTAAGGCC
1 TTAGGGTT
*
9382665 CTAGGGTTT
1 TTAGGG-TT
*
9382674 TTAGGCTT
1 TTAGGGTT
9382682 TTAGGGTT
1 TTAGGGTT
*
9382690 TAAGGGTT
1 TTAGGGTT
*
9382698 TT-GGATT
1 TTAGGGTT
9382705 TT-GTGGTT
1 TTAG-GGTT
****
9382713 TT-GAAAC
1 TTAGGGTT
*
9382720 TTAAGGTT
1 TTAGGGTT
9382728 TT-GGGATT
1 TTAGGG-TT
*
9382736 TT-GGATT
1 TTAGGGTT
9382743 TTAGGG-T
1 TTAGGGTT
*
9382750 TTAGAGTT
1 TTAGGGTT
**
9382758 TTAATGTT
1 TTAGGGTT
* *
9382766 TCAAGG-T
1 TTAGGGTT
* *
9382773 TCAGGATT
1 TTAGGGTT
*
9382781 TTAAGGTT
1 TTAGGGTT
*
9382789 TTAGAGTT
1 TTAGGGTT
* *
9382797 TCAAGGTT
1 TTAGGGTT
*
9382805 TTAAGGTT
1 TTAGGGTT
*
9382813 TT-GGATT
1 TTAGGGTT
9382820 TTAGGGTT
1 TTAGGGTT
*
9382828 TTA-GATT
1 TTAGGGTT
*
9382835 TT-GGGGT
1 TTAGGGTT
9382842 TT-GGAGTT
1 TTAGG-GTT
* *
9382850 TTACGATT
1 TTAGGGTT
*
9382858 TTAAGGTT
1 TTAGGGTT
*
9382866 TCAGGGTT
1 TTAGGGTT
*
9382874 TTAAGGTT
1 TTAGGGTT
9382882 T
1 T
9382883 AAGGTTTGAG
Statistics
Matches: 187, Mismatches: 66, Indels: 28
0.67 0.23 0.10
Matches are distributed among these distances:
7 45 0.24
8 128 0.68
9 14 0.07
ACGTcount: A:0.19, C:0.04, G:0.29, T:0.48
Consensus pattern (8 bp):
TTAGGGTT
Found at i:9382652 original size:33 final size:32
Alignment explanation
Indices: 9382614--9382714 Score: 80
Period size: 33 Copynumber: 3.1 Consensus size: 32
9382604 TGTCTTAGGG
9382614 TTTTAGGGTTTCAAGTTCTTAGGATTTTGAGGT
1 TTTTAGGGTTT-AAGTTCTTAGGATTTTGAGGT
* ** * * * *
9382647 TTTTAGAGTTTTAAGGCCCTAGGGTTTTTAGGC
1 TTTTAG-GGTTTAAGTTCTTAGGATTTTGAGGT
*
9382680 TTTTAGGGTTTAAGGGTT-TT-GGATTTTGTGGT
1 TTTTAGGGTTTAA--GTTCTTAGGATTTTGAGGT
9382712 TTT
1 TTT
9382715 GAAACTTAAG
Statistics
Matches: 50, Mismatches: 15, Indels: 7
0.69 0.21 0.10
Matches are distributed among these distances:
32 17 0.34
33 28 0.56
34 5 0.10
ACGTcount: A:0.16, C:0.06, G:0.29, T:0.50
Consensus pattern (32 bp):
TTTTAGGGTTTAAGTTCTTAGGATTTTGAGGT
Found at i:9382811 original size:39 final size:39
Alignment explanation
Indices: 9382738--9382832 Score: 120
Period size: 39 Copynumber: 2.5 Consensus size: 39
9382728 TTGGGATTTT
* * *
9382738 GGATTTT-AGGGTTTAGAGTTTTAATGTTTCAAGGTTCA
1 GGATTTTAAGGTTTTAGAGTTTCAAGGTTTCAAGGTTCA
* **
9382776 GGATTTTAAGGTTTTAGAGTTTCAAGGTTTTAAGGTTTT
1 GGATTTTAAGGTTTTAGAGTTTCAAGGTTTCAAGGTTCA
*
9382815 GGATTTTAGGGTTTTAGA
1 GGATTTTAAGGTTTTAGA
9382833 TTTTGGGGTT
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
38 7 0.14
39 42 0.86
ACGTcount: A:0.23, C:0.03, G:0.27, T:0.46
Consensus pattern (39 bp):
GGATTTTAAGGTTTTAGAGTTTCAAGGTTTCAAGGTTCA
Found at i:9382827 original size:15 final size:15
Alignment explanation
Indices: 9382803--9382852 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
9382793 AGTTTCAAGG
*
9382803 TTTTAAGGTTTTGGA
1 TTTTAGGGTTTTGGA
*
9382818 TTTTAGGGTTTTAGA
1 TTTTAGGGTTTTGGA
*
9382833 TTTT-GGGGTTTGGA
1 TTTTAGGGTTTTGGA
9382847 GTTTTA
1 -TTTTA
9382853 CGATTTTAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
14 8 0.28
15 21 0.72
ACGTcount: A:0.16, C:0.00, G:0.30, T:0.54
Consensus pattern (15 bp):
TTTTAGGGTTTTGGA
Found at i:9382865 original size:23 final size:23
Alignment explanation
Indices: 9382825--9382934 Score: 77
Period size: 23 Copynumber: 4.9 Consensus size: 23
9382815 GGATTTTAGG
**
9382825 GTTTT-AGATTTTGGGGTTTGGA
1 GTTTTAAGATTTTAAGGTTTGGA
*
9382847 GTTTTACGATTTTAAGGTTTCAGG-
1 GTTTTAAGATTTTAAGGTTT--GGA
*
9382871 GTTTTAAG-GTTTAAGGTTT-GA
1 GTTTTAAGATTTTAAGGTTTGGA
* *
9382892 GGTTTAAGA-TTTAAGGTTTTAGA
1 GTTTTAAGATTTTAAGG-TTTGGA
** *
9382915 GTTTCGAGATTTTAGGGTTT
1 GTTTTAAGATTTTAAGGTTT
9382935 TAAAAATTTT
Statistics
Matches: 70, Mismatches: 10, Indels: 15
0.74 0.11 0.16
Matches are distributed among these distances:
20 1 0.01
21 14 0.20
22 8 0.11
23 32 0.46
24 13 0.19
25 2 0.03
ACGTcount: A:0.21, C:0.03, G:0.29, T:0.47
Consensus pattern (23 bp):
GTTTTAAGATTTTAAGGTTTGGA
Found at i:9382885 original size:7 final size:7
Alignment explanation
Indices: 9382857--9382910 Score: 63
Period size: 7 Copynumber: 7.4 Consensus size: 7
9382847 GTTTTACGAT
9382857 TTTAAGG
1 TTTAAGG
*
9382864 TTTCAGGG
1 TTT-AAGG
9382872 TTTTAAGG
1 -TTTAAGG
9382880 TTTAAGG
1 TTTAAGG
*
9382887 TTTGAGG
1 TTTAAGG
*
9382894 TTTAAGA
1 TTTAAGG
9382901 TTTAAGG
1 TTTAAGG
9382908 TTT
1 TTT
9382911 TAGAGTTTCG
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
7 30 0.77
8 6 0.15
9 3 0.08
ACGTcount: A:0.24, C:0.02, G:0.28, T:0.46
Consensus pattern (7 bp):
TTTAAGG
Found at i:9386343 original size:18 final size:18
Alignment explanation
Indices: 9386320--9386383 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
9386310 TAAGTCACTA
9386320 TTCATGTATATGGTCTTG
1 TTCATGTATATGGTCTTG
* * *
9386338 TTCATGTATACGGTATTA
1 TTCATGTATATGGTCTTG
* *
9386356 TTTATGTAAATGGTAC-TG
1 TTCATGTATATGGT-CTTG
*
9386374 TTCAAGTATA
1 TTCATGTATA
9386384 AAAAGAATGG
Statistics
Matches: 34, Mismatches: 11, Indels: 2
0.72 0.23 0.04
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.27, C:0.09, G:0.19, T:0.45
Consensus pattern (18 bp):
TTCATGTATATGGTCTTG
Found at i:9389096 original size:47 final size:48
Alignment explanation
Indices: 9389002--9389098 Score: 126
Period size: 47 Copynumber: 2.0 Consensus size: 48
9388992 TCTTATTTTT
** * *
9389002 AACAAAAGTGAGTTAATATTTTCTTTTATAAAAGAAGTTATAGCTTGA
1 AACAAAAGTGAGTTAATATCGTCTTTTATAAAAGAAGTCATAACTTGA
*
9389050 AACAAAAGTGA-TTGAATATCGT-TTTTATAAAAGAAGTCGTAACTTGA
1 AACAAAAGTGAGTT-AATATCGTCTTTTATAAAAGAAGTCATAACTTGA
9389097 AA
1 AA
9389099 TGAGAAAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
47 26 0.60
48 17 0.40
ACGTcount: A:0.43, C:0.07, G:0.15, T:0.34
Consensus pattern (48 bp):
AACAAAAGTGAGTTAATATCGTCTTTTATAAAAGAAGTCATAACTTGA
Found at i:9389791 original size:5 final size:5
Alignment explanation
Indices: 9389783--9389808 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
9389773 TTTTAAAAGA
9389783 TCTTT TCTTT TCTTT TCTTT TCTTT T
1 TCTTT TCTTT TCTTT TCTTT TCTTT T
9389809 TCTAGAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TCTTT
Found at i:9390082 original size:16 final size:16
Alignment explanation
Indices: 9390061--9390098 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
9390051 TTTTTTTTCA
9390061 TTTTTATATT-ATATAT
1 TTTTTAT-TTCATATAT
*
9390077 TTTTTATTTCCTATAT
1 TTTTTATTTCATATAT
9390093 TTTTTA
1 TTTTTA
9390099 GAAGAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTTATTTCATATAT
Found at i:9391444 original size:14 final size:14
Alignment explanation
Indices: 9391415--9391455 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 14
9391405 AAAATTGGCC
*
9391415 TTTTCTTTTTCT--
1 TTTTCTTTTTTTAA
9391427 TTTTCTTTTTTTAA
1 TTTTCTTTTTTTAA
9391441 TTTTCTTTGTTTTAA
1 TTTTCTTT-TTTTAA
9391456 AGAACTTTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
12 11 0.44
14 8 0.32
15 6 0.24
ACGTcount: A:0.10, C:0.10, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTTCTTTTTTTAA
Found at i:9391444 original size:15 final size:15
Alignment explanation
Indices: 9391427--9391455 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
9391417 TTCTTTTTCT
9391427 TTTTCTTT-TTTTAA
1 TTTTCTTTGTTTTAA
9391441 TTTTCTTTGTTTTAA
1 TTTTCTTTGTTTTAA
9391456 AGAACTTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.14, C:0.07, G:0.03, T:0.76
Consensus pattern (15 bp):
TTTTCTTTGTTTTAA
Found at i:9395480 original size:211 final size:206
Alignment explanation
Indices: 9395209--9395623 Score: 471
Period size: 211 Copynumber: 2.0 Consensus size: 206
9395199 AAGAAAAATG
* * *
9395209 AAATTTTTATCATATTAAAATTTTTCTATAAATATTTCAATACAATGGTAATATTTTAAAAAAAA
1 AAATTTTTATCATATTAAAATTTTTCTATAAATACTCCAACACAATGGTAATATTTTAAAAAAAA
* * * * * *
9395274 TCTTCTCATCTA-AGGATTTCGTAAAGCATGAGTGCTTGGAATACTTTTAAAATCCCATCATTGG
66 TCTTCTCACCTAGA-G-TTTCGT-AAGCATCACTACTCGGAATACTTTT--AATCCCATCATCGG
* **
9395338 ATAAAATTTTTTTTTTATTATTTATATTACT-ATTTTTTAATAATTCTATTTAATTTTTAATTTT
126 ATAAAATTTTTCTTTTATTATTT-T-TTACTAATTTTGCAATAATTCTATTTAATTTTT-ATTTT
*
9395402 T-TAATTTTTATAAAAAGA
188 TATAATTTATATAAAAAGA
** * * *
9395420 AAATTTTTATTGTATTGGAAATCTTTT-TATAAATACTCCAACACACTGGTAGTA-TTTAAAAAA
1 AAATTTTTATCATATT-AAAAT-TTTTCTATAAATACTCCAACACAATGGTAATATTTTAAAAAA
* *
9395483 AATCTTCTCACCTAGAGTTTCGTAAGCATCACTACTCGGAGTACTTTTAATCTCATCATCGGATA
64 AATCTTCTCACCTAGAGTTTCGTAAGCATCACTACTCGGAATACTTTTAATCCCATCATCGGATA
* * * * *
9395548 AAATTTTTCTTTTCTTATTTTTTATTAATTTTGCATTATTTTTATTTAATTTTTATTTTTATAAT
129 AAATTTTTCTTTTATTATTTTTTACTAATTTTGCAATAATTCTATTTAATTTTTATTTTTATAAT
*
9395613 TTATATTAAAA
194 TTATATAAAAA
9395624 TTAACAAAAT
Statistics
Matches: 173, Mismatches: 26, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
205 10 0.06
206 36 0.21
207 33 0.19
209 20 0.12
210 6 0.03
211 37 0.21
212 27 0.16
213 4 0.02
ACGTcount: A:0.34, C:0.11, G:0.07, T:0.48
Consensus pattern (206 bp):
AAATTTTTATCATATTAAAATTTTTCTATAAATACTCCAACACAATGGTAATATTTTAAAAAAAA
TCTTCTCACCTAGAGTTTCGTAAGCATCACTACTCGGAATACTTTTAATCCCATCATCGGATAAA
ATTTTTCTTTTATTATTTTTTACTAATTTTGCAATAATTCTATTTAATTTTTATTTTTATAATTT
ATATAAAAAGA
Found at i:9399253 original size:24 final size:24
Alignment explanation
Indices: 9399206--9399253 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
9399196 TTGTTCTGTG
*
9399206 GTTCTTTTCTTGTATATGTGTTTT
1 GTTCTTTTCTTGTATATGTATTTT
*
9399230 GTTCTTTTTTTTGTAT-TGTATTTT
1 GTTC-TTTTCTTGTATATGTATTTT
9399254 TTTTGTTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.08, C:0.06, G:0.15, T:0.71
Consensus pattern (24 bp):
GTTCTTTTCTTGTATATGTATTTT
Found at i:9400176 original size:21 final size:21
Alignment explanation
Indices: 9400151--9400197 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
9400141 AATTTTTGGT
9400151 TTTTTAGATTTTTTTACTTT-A
1 TTTTTAGATTTTTTTA-TTTGA
* *
9400172 TTTTTCGGTTTTTTTATTTGA
1 TTTTTAGATTTTTTTATTTGA
9400193 TTTTT
1 TTTTT
9400198 TTTCATTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.13, C:0.04, G:0.09, T:0.74
Consensus pattern (21 bp):
TTTTTAGATTTTTTTATTTGA
Found at i:9400214 original size:16 final size:15
Alignment explanation
Indices: 9400180--9400230 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
9400170 TATTTTTCGG
**
9400180 TTTTTTT-ATTTGAT
1 TTTTTTTCATTTTTT
9400194 TTTTTTTCATTTTTT
1 TTTTTTTCATTTTTT
* *
9400209 TGTTTTTGATTTTTT
1 TTTTTTTCATTTTTT
9400224 TTTTTTT
1 TTTTTTT
9400231 TTGTGGAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
14 7 0.23
15 24 0.77
ACGTcount: A:0.08, C:0.02, G:0.06, T:0.84
Consensus pattern (15 bp):
TTTTTTTCATTTTTT
Found at i:9400229 original size:23 final size:24
Alignment explanation
Indices: 9400180--9400234 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 24
9400170 TATTTTTCGG
9400180 TTTTTT-TATTTGATTTTTTTTCAT
1 TTTTTTGTATTTGATTTTTTTT-AT
*
9400204 TTTTTTGTTTTTGATTTTTTTT-T
1 TTTTTTGTATTTGATTTTTTTTAT
9400227 TTTTTTGT
1 TTTTTTGT
9400235 GGAAAATTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 9 0.31
24 6 0.21
25 14 0.48
ACGTcount: A:0.07, C:0.02, G:0.07, T:0.84
Consensus pattern (24 bp):
TTTTTTGTATTTGATTTTTTTTAT
Found at i:9400615 original size:84 final size:85
Alignment explanation
Indices: 9400522--9400686 Score: 192
Period size: 84 Copynumber: 2.0 Consensus size: 85
9400512 GATTATACCT
** * * ** **
9400522 AAAGCTTTTACAAATCTTGACATTGAAACAGATTCAGCTTGGAAGACTT-GTGAATCTTGCCTG-
1 AAAGCTTTTACAAATCTAAACATTAAAACAGACTCAGCTTAAAAGA-TTAAAGAATCTTGCCTGA
*
9400585 AAGAACTTAGAGACTATGTTTG
65 AAG-ACTTAGAAACTATGTTTG
* *
9400607 AAAG-TTTTACAATTCTAAACATTAAAATAGACTCAGCTTAAAAGATTAAAGAATCTTGCCTGAA
1 AAAGCTTTTACAAATCTAAACATTAAAACAGACTCAGCTTAAAAGATTAAAGAATCTTGCCTGAA
9400671 AGACTTAGAAACTATG
66 AGACTTAGAAACTATG
9400687 CCCAAAGGTC
Statistics
Matches: 67, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
83 2 0.03
84 58 0.87
85 7 0.10
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (85 bp):
AAAGCTTTTACAAATCTAAACATTAAAACAGACTCAGCTTAAAAGATTAAAGAATCTTGCCTGAA
AGACTTAGAAACTATGTTTG
Found at i:9400819 original size:49 final size:49
Alignment explanation
Indices: 9400743--9400898 Score: 163
Period size: 49 Copynumber: 3.2 Consensus size: 49
9400733 AGACACATAA
* *
9400743 ATTTGGAAAAGGCTCATCTAATCAGAGGCATAGAAAGTTTAGAAATCTC
1 ATTTGAAAAAGGCTCATCTAATCAGAGGCATAGAAACTTTAGAAATCTC
* * *
9400792 ATTTGAAAAATGCTCCTCTAAAT-AGAGGCATAGAAACTTTAGAAATTTC
1 ATTTGAAAAAGGCTCATCT-AATCAGAGGCATAGAAACTTTAGAAATCTC
** * ** * *
9400841 ATTT-AGAAAAGGCTTTTCTAATAAGAGGCATTTAAACTTTTGAAATCTT
1 ATTTGA-AAAAGGCTCATCTAATCAGAGGCATAGAAACTTTAGAAATCTC
*
9400890 ATTCGAAAA
1 ATTTGAAAA
9400899 TGCTCTTTGA
Statistics
Matches: 89, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
48 4 0.04
49 81 0.91
50 4 0.04
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.31
Consensus pattern (49 bp):
ATTTGAAAAAGGCTCATCTAATCAGAGGCATAGAAACTTTAGAAATCTC
Found at i:9401517 original size:12 final size:12
Alignment explanation
Indices: 9401500--9401529 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
9401490 ATGCAATGCA
9401500 AATGCACATGAC
1 AATGCACATGAC
9401512 AATGCACATGAC
1 AATGCACATGAC
9401524 AATGCA
1 AATGCA
9401530 TGAATGCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.43, C:0.23, G:0.17, T:0.17
Consensus pattern (12 bp):
AATGCACATGAC
Found at i:9403532 original size:21 final size:21
Alignment explanation
Indices: 9403508--9403548 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
9403498 TCTCTTTTTT
*
9403508 TGTTAAAGCTCTTATGCCAAA
1 TGTTAAAGCTCTTATACCAAA
9403529 TGTTAAAGCTCTTATACCAA
1 TGTTAAAGCTCTTATACCAA
9403549 TTGCTATAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (21 bp):
TGTTAAAGCTCTTATACCAAA
Found at i:9404685 original size:19 final size:19
Alignment explanation
Indices: 9404658--9404695 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
9404648 TAGGCATGTT
9404658 CAAAGATTCATGCATTAAA
1 CAAAGATTCATGCATTAAA
* *
9404677 CAAATATTCATGTATTAAA
1 CAAAGATTCATGCATTAAA
9404696 ACTATTAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.47, C:0.13, G:0.08, T:0.32
Consensus pattern (19 bp):
CAAAGATTCATGCATTAAA
Found at i:9407515 original size:75 final size:75
Alignment explanation
Indices: 9407363--9407507 Score: 211
Period size: 75 Copynumber: 1.9 Consensus size: 75
9407353 CCCAAATTGT
* * * * * *
9407363 TTTGGGTCCTTGAGAGTTAGTGATCATATCTCTTGTTCTTTTTGGAATTCATACTTGCCTAATTT
1 TTTGGGTCCTTGAGAATTAGTGACCAAATCTCTTGTTCATTTTCGAATCCATACTTGCCTAATTT
9407428 TAAATAAAAC
66 TAAATAAAAC
*
9407438 TTTGGGTCCTTGAGAATTAGTGACCAAATCTCTTGTTCATTTTCGAATCCAT-CATTGCTTAATT
1 TTTGGGTCCTTGAGAATTAGTGACCAAATCTCTTGTTCATTTTCGAATCCATAC-TTGCCTAATT
9407502 TTAAAT
65 TTAAAT
9407508 GAGACTTTTC
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
74 1 0.02
75 61 0.98
ACGTcount: A:0.26, C:0.16, G:0.15, T:0.43
Consensus pattern (75 bp):
TTTGGGTCCTTGAGAATTAGTGACCAAATCTCTTGTTCATTTTCGAATCCATACTTGCCTAATTT
TAAATAAAAC
Found at i:9410141 original size:21 final size:21
Alignment explanation
Indices: 9410102--9410141 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
9410092 TAAAGGGTTA
* *
9410102 AAAGATTCATATCTAAAAATC
1 AAAGATTCACATATAAAAATC
*
9410123 AAAGATTCACATATGAAAA
1 AAAGATTCACATATAAAAA
9410142 GACTTGCATC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.55, C:0.12, G:0.07, T:0.25
Consensus pattern (21 bp):
AAAGATTCACATATAAAAATC
Found at i:9410369 original size:59 final size:60
Alignment explanation
Indices: 9410225--9410418 Score: 175
Period size: 59 Copynumber: 3.3 Consensus size: 60
9410215 TTTGAAGAGA
* * * *
9410225 TTCAGATATTCACATATGGAAATCGAATATTCACATTTGAAAAGATTCGCTTATTAAAAAC
1 TTCAAATATTCACAT-TGGAAATCAAATATTCACATTTGAAGAGATTCGCATATTAAAAAC
* * * * * *
9410286 TT-AAA-ATTCACCTTTAGAAATCAAATATTCATATTTGAAGAGATTTGCAT-TTAGAAAT
1 TTCAAATATTCA-CATTGGAAATCAAATATTCACATTTGAAGAGATTCGCATATTAAAAAC
* * *
9410344 TTCAAATATTCACATTGGAAGTCAAAGATTCACATTTGAAAGAGA--CTCATATCTAAAAA-
1 TTCAAATATTCACATTGGAAATCAAATATTCACATTTG-AAGAGATTCGCATAT-TAAAAAC
* *
9410403 GTCAAAGATTCACATT
1 TTCAAATATTCACATT
9410419 TGAATAGATT
Statistics
Matches: 107, Mismatches: 20, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
58 11 0.10
59 74 0.69
60 20 0.19
61 2 0.02
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.33
Consensus pattern (60 bp):
TTCAAATATTCACATTGGAAATCAAATATTCACATTTGAAGAGATTCGCATATTAAAAAC
Found at i:9410456 original size:37 final size:38
Alignment explanation
Indices: 9410361--9410464 Score: 147
Period size: 37 Copynumber: 2.7 Consensus size: 38
9410351 ATTCACATTG
* *
9410361 GAAGTCAAAGATTCACATTTGAAAGAGACTCATATCTAA
1 GAAGTCAAAGATTCACATTTG-AATAGATTCATATCTAA
*
9410400 AAAGTCAAAGATTCACATTTGAATAGATTCATATC-AA
1 GAAGTCAAAGATTCACATTTGAATAGATTCATATCTAA
**
9410437 GAAGTCAAAGATTTGCATTTGAATAGAT
1 GAAGTCAAAGATTCACATTTGAATAGAT
9410465 ACATTAAGAT
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
37 27 0.46
38 12 0.20
39 20 0.34
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.29
Consensus pattern (38 bp):
GAAGTCAAAGATTCACATTTGAATAGATTCATATCTAA
Found at i:9410497 original size:21 final size:21
Alignment explanation
Indices: 9410471--9410543 Score: 76
Period size: 21 Copynumber: 3.5 Consensus size: 21
9410461 AGATACATTA
*
9410471 AGATTCACATTTGAAGG-TTCG
1 AGATTCACA-TTGAAGGTTTCC
*
9410492 AGATTCACATTGAGGGTTTCC
1 AGATTCACATTGAAGGTTTCC
* * * *
9410513 AGATTCATATCGAAGATTTCA
1 AGATTCACATTGAAGGTTTCC
9410534 AGATTCACAT
1 AGATTCACAT
9410544 CAAAGATTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (21 bp):
AGATTCACATTGAAGGTTTCC
Found at i:9410564 original size:21 final size:21
Alignment explanation
Indices: 9410508--9410552 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
9410498 ACATTGAGGG
* * *
9410508 TTTCCAGATTCATATCGAAGA
1 TTTCAAGATTCACATCAAAGA
9410529 TTTCAAGATTCACATCAAAGA
1 TTTCAAGATTCACATCAAAGA
9410550 TTT
1 TTT
9410553 TGAGATTTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.36
Consensus pattern (21 bp):
TTTCAAGATTCACATCAAAGA
Found at i:9419618 original size:14 final size:14
Alignment explanation
Indices: 9419599--9419625 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9419589 TAATTTAAAA
9419599 TATCATAAATATTC
1 TATCATAAATATTC
9419613 TATCATAAATATT
1 TATCATAAATATT
9419626 TTGTTTATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (14 bp):
TATCATAAATATTC
Found at i:9420371 original size:20 final size:22
Alignment explanation
Indices: 9420346--9420385 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
9420336 ATAAATTTTG
9420346 AAATTT-TAA-AATTAAAAAAA
1 AAATTTCTAATAATTAAAAAAA
*
9420366 AAATTTCTAATTATTAAAAA
1 AAATTTCTAATAATTAAAAA
9420386 TTATTTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 3 0.18
22 8 0.47
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (22 bp):
AAATTTCTAATAATTAAAAAAA
Found at i:9422224 original size:16 final size:16
Alignment explanation
Indices: 9422203--9422238 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
9422193 AAGTCATGTG
* *
9422203 AATTTAATTATTTATA
1 AATTTAATAATTCATA
9422219 AATTTAATAATTCATA
1 AATTTAATAATTCATA
9422235 AATT
1 AATT
9422239 AATGGTATCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (16 bp):
AATTTAATAATTCATA
Found at i:9425205 original size:2 final size:2
Alignment explanation
Indices: 9425198--9425240 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
9425188 ATTAATCTAT
* *
9425198 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AT AC AT AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
9425240 A
1 A
9425241 AAAAGTCAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.44, G:0.00, T:0.05
Consensus pattern (2 bp):
AC
Found at i:9427577 original size:3 final size:3
Alignment explanation
Indices: 9427569--9427606 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
9427559 AGCCAAAAAT
*
9427569 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATT ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
9427607 TATTATTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:9427607 original size:6 final size:6
Alignment explanation
Indices: 9427572--9427639 Score: 55
Period size: 6 Copynumber: 11.3 Consensus size: 6
9427562 CAAAAATATA
* * * * * *
9427572 ATAATA ATAATA ATAATA ATAATA ATAATT ATAATT ATTATT ATTATT
1 ATAATT ATAATT ATAATT ATAATT ATAATT ATAATT ATAATT ATAATT
* * *
9427620 ATTATT ATTATT ATTATT AT
1 ATAATT ATAATT ATAATT AT
9427640 GAAAAAAATA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 60 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (6 bp):
ATAATT
Found at i:9427611 original size:3 final size:3
Alignment explanation
Indices: 9427599--9427639 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
9427589 AATAATAATA
*
9427599 ATT ATA ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
9427640 GAAAAAAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:9431511 original size:3 final size:3
Alignment explanation
Indices: 9431503--9431572 Score: 131
Period size: 3 Copynumber: 23.3 Consensus size: 3
9431493 ATGAAAAATA
*
9431503 AAT AAT AAT AAT AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
9431551 AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT A
9431573 GTAAAAGCAT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:9431645 original size:25 final size:26
Alignment explanation
Indices: 9431606--9431680 Score: 71
Period size: 25 Copynumber: 2.9 Consensus size: 26
9431596 AATGGGCTTG
* *
9431606 AACCAAGATGGGCCTAATTGGGCTCA
1 AACCAAAATGAGCCTAATTGGGCTCA
** * * *
9431632 AA-TTAAATGAGCCTAGTTAGGCCCA
1 AACCAAAATGAGCCTAATTGGGCTCA
*
9431657 AACCAAAATGGGCCTAATTGGGCT
1 AACCAAAATGAGCCTAATTGGGCT
9431681 TGGACAAAAA
Statistics
Matches: 35, Mismatches: 13, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
25 18 0.51
26 17 0.49
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (26 bp):
AACCAAAATGAGCCTAATTGGGCTCA
Found at i:9432046 original size:118 final size:118
Alignment explanation
Indices: 9431876--9432393 Score: 522
Period size: 118 Copynumber: 4.4 Consensus size: 118
9431866 TAATGATTGA
* * * *
9431876 GACGAAACCATAAATCATAAAAAATGATCTAGACTAAGCCAAAATCAAGTGACCGAGACAAAACC
1 GACGAAACCATAAATCATAAGAAATGATCTGGACTGAGCCAAGATCAAGTGACCGAGACAAAACC
*
9431941 ACT-AGTCAGATGAGGTGACCA-AGATCGAGTCAAGGTCGAAAATAAATTATCAG
66 A-TGAGTCAAATGAGGTGACCAGA-ATCGAGTCAAGGTCGAAAATAAATTATCAG
* * * * * * *
9431994 GACGAACCCACAAATTATAAGAAATGATCTGGACTAAGCCAAGATCAAGTGACTGGGACATAACC
1 GACGAAACCATAAATCATAAGAAATGATCTGGACTGAGCCAAGATCAAGTGACCGAGACAAAACC
* * * * *
9432059 ATGAGTCAAATGAGATGACCAGAATCAAGTCGAGGTCGAAAATAAATAATTAG
66 ATGAGTCAAATGAGGTGACCAGAATCGAGTCAAGGTCGAAAATAAATTATCAG
* * * * * *
9432112 GATGAAACCATAAATCATAAGAAATGATCTAGACTGTGCCAAGATCGAGTGACTGGGACAAAACC
1 GACGAAACCATAAATCATAAGAAATGATCTGGACTGAGCCAAGATCAAGTGACCGAGACAAAACC
* * * * * *
9432177 AAGAGTCAAATGAGGTGACCAGGATCGAGTCAGGGTTGAAAATAGATGATCAG
66 ATGAGTCAAATGAGGTGACCAGAATCGAGTCAAGGTCGAAAATAAATTATCAG
* * * * * * ** * * *
9432230 GATGAAACTATGAATCATAAAAAATGATTTGGGCTGAGCCAAGATTGAGTGATCAAGACGAAACC
1 GACGAAACCATAAATCATAAGAAATGATCTGGACTGAGCCAAGATCAAGTGACCGAGACAAAACC
* * * * * *
9432295 ATGAGTCAAATGAGGTGATCAGAACCGAGTCAAGGTTGAAGAT-AATGAT-TG
66 ATGAGTCAAATGAGGTGACCAGAATCGAGTCAAGGTCGAAAATAAATTATCAG
* * * **
9432346 AAATGGAACCACGAATCATAAGAAATGATCTGGACTGAGCCAAGATCA
1 -GACGAAACCATAAATCATAAGAAATGATCTGGACTGAGCCAAGATCA
9432394 CGTAAGTGAA
Statistics
Matches: 333, Mismatches: 64, Indels: 7
0.82 0.16 0.02
Matches are distributed among these distances:
116 1 0.00
117 44 0.13
118 287 0.86
119 1 0.00
ACGTcount: A:0.42, C:0.16, G:0.23, T:0.19
Consensus pattern (118 bp):
GACGAAACCATAAATCATAAGAAATGATCTGGACTGAGCCAAGATCAAGTGACCGAGACAAAACC
ATGAGTCAAATGAGGTGACCAGAATCGAGTCAAGGTCGAAAATAAATTATCAG
Done.