Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 52 of 117
Found at i:9673538 original size:20 final size:20
Alignment explanation
Indices: 9673474--9673608 Score: 110
Period size: 20 Copynumber: 6.5 Consensus size: 20
9673464 TATTTACATG
**
9673474 ATTAATATATTTGTGTGATTT
1 ATTAATATATTTGCATGA-TT
* *
9673495 GTTAATATATTTGC-TGACT
1 ATTAATATATTTGCATGATT
*
9673514 ATTAATATGTTTGCATGATT
1 ATTAATATATTTGCATGATT
* *
9673534 ATTAATTTATCTGCATGATTAT
1 ATTAATATATTTGCATGA-T-T
* **
9673556 CAATTTATATATTTGTGTGATTT
1 --ATTAATATATTTGCATGA-TT
9673579 ATTAATATATTTGCATGATT
1 ATTAATATATTTGCATGATT
*
9673599 ATTATTATAT
1 ATTAATATAT
9673609 ATTTAATAGC
Statistics
Matches: 91, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
19 13 0.14
20 33 0.36
21 28 0.31
22 1 0.01
23 1 0.01
24 15 0.16
ACGTcount: A:0.30, C:0.05, G:0.12, T:0.53
Consensus pattern (20 bp):
ATTAATATATTTGCATGATT
Found at i:9673629 original size:21 final size:21
Alignment explanation
Indices: 9673603--9673670 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
9673593 ATGATTATTA
9673603 TTATATATTTAATAGCATGTT
1 TTATATATTTAATAGCATGTT
*
9673624 TTATAT-TGTTAATTA-CATG-A
1 TTATATAT-TTAA-TAGCATGTT
* * *
9673644 TAATATATTTATTTGCATGTT
1 TTATATATTTAATAGCATGTT
9673665 TTATAT
1 TTATAT
9673671 TGTTAATTGC
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
19 1 0.03
20 13 0.36
21 20 0.56
22 2 0.06
ACGTcount: A:0.32, C:0.04, G:0.09, T:0.54
Consensus pattern (21 bp):
TTATATATTTAATAGCATGTT
Found at i:9673650 original size:41 final size:41
Alignment explanation
Indices: 9673605--9673881 Score: 319
Period size: 41 Copynumber: 6.8 Consensus size: 41
9673595 GATTATTATT
* *
9673605 ATATATTTAATAGCATGTTTTATATTGTTAATTACATGATA
1 ATATATTTAATTGCATGTTTTATATTGTTAATTGCATGATA
*
9673646 ATATATTTATTTGCATGTTTTATATTGTTAATTGC---ATA
1 ATATATTTAATTGCATGTTTTATATTGTTAATTGCATGATA
* * *
9673684 ATATATTT-ATATGCATATTTTATACTGTTAATTTCATGATA
1 ATATATTTAAT-TGCATGTTTTATATTGTTAATTGCATGATA
* * * *
9673725 CTATATTTAATTGCATGTTTTATATTGTCAATTTCATGATT
1 ATATATTTAATTGCATGTTTTATATTGTTAATTGCATGATA
* * * *
9673766 ATATATTTTATTGTATGATTTATATTGTTAATTGCATGATT
1 ATATATTTAATTGCATGTTTTATATTGTTAATTGCATGATA
* * ** *
9673807 ATATATTTATTTGCATGTTTTACATTACTAATTGCATGATT
1 ATATATTTAATTGCATGTTTTATATTGTTAATTGCATGATA
* * *
9673848 AGATATTTAATTACATGTTTTACATTGTTAATTG
1 ATATATTTAATTGCATGTTTTATATTGTTAATTG
9673882 TGTTATTATC
Statistics
Matches: 201, Mismatches: 30, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
37 1 0.00
38 32 0.16
41 166 0.83
42 2 0.01
ACGTcount: A:0.31, C:0.06, G:0.10, T:0.52
Consensus pattern (41 bp):
ATATATTTAATTGCATGTTTTATATTGTTAATTGCATGATA
Found at i:9674231 original size:18 final size:17
Alignment explanation
Indices: 9674201--9674234 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
9674191 TATTTATATG
*
9674201 ATTATTATTATTACATA
1 ATTATTATAATTACATA
9674218 ATTATATATAATTACAT
1 ATTAT-TATAATTACAT
9674235 GAATGATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTATTATAATTACATA
Found at i:9674261 original size:26 final size:26
Alignment explanation
Indices: 9674219--9674280 Score: 63
Period size: 26 Copynumber: 2.3 Consensus size: 26
9674209 TATTACATAA
*
9674219 TTATATATAATTACATGA-ATGATTT
1 TTATATATAATTACATGATATAATTT
* *
9674244 TTATGATATGATTGCATGATATAATTT
1 TTAT-ATATAATTACATGATATAATTT
9674271 TATAATATAT
1 T-T-ATATAT
9674281 TTGTATGATA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
25 4 0.13
26 12 0.40
27 7 0.23
28 5 0.17
29 2 0.07
ACGTcount: A:0.39, C:0.03, G:0.10, T:0.48
Consensus pattern (26 bp):
TTATATATAATTACATGATATAATTT
Found at i:9674771 original size:21 final size:20
Alignment explanation
Indices: 9674747--9674790 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
9674737 ATATTAATAG
9674747 AAACATCACATAGCAAT-ACAA
1 AAACATC-CATAGC-ATCACAA
*
9674768 AAACATCCATTGCATCACAA
1 AAACATCCATAGCATCACAA
9674788 AAA
1 AAA
9674791 TAAGTTAGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 2 0.10
20 12 0.57
21 7 0.33
ACGTcount: A:0.55, C:0.25, G:0.05, T:0.16
Consensus pattern (20 bp):
AAACATCCATAGCATCACAA
Found at i:9675966 original size:6 final size:6
Alignment explanation
Indices: 9675957--9675990 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
9675947 CCGTCCAATC
*
9675957 CCAACT CCAACT CCAACT CCAACT CCAACA CCAA
1 CCAACT CCAACT CCAACT CCAACT CCAACT CCAA
9675991 TCCCAATCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.38, C:0.50, G:0.00, T:0.12
Consensus pattern (6 bp):
CCAACT
Found at i:9675996 original size:18 final size:18
Alignment explanation
Indices: 9675951--9676000 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
9675941 TAATTTCCGT
*
9675951 CCAATCCCAACTCCAACT
1 CCAATCCCAACTCCAACA
9675969 CCAA-CTCCAACTCCAACA
1 CCAATC-CCAACTCCAACA
9675987 CCAATCCCAA-TCCA
1 CCAATCCCAACTCCA
9676001 TAACCCTATC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 23 0.79
19 1 0.03
ACGTcount: A:0.36, C:0.50, G:0.00, T:0.14
Consensus pattern (18 bp):
CCAATCCCAACTCCAACA
Found at i:9679542 original size:18 final size:18
Alignment explanation
Indices: 9679519--9679558 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
9679509 CTCTTTTTTT
9679519 TGGTGTCGGTTGCTATTG
1 TGGTGTCGGTTGCTATTG
9679537 TGGTGTCGGTTGCTATTG
1 TGGTGTCGGTTGCTATTG
9679555 TGGT
1 TGGT
9679559 TTCAAATGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.05, C:0.10, G:0.40, T:0.45
Consensus pattern (18 bp):
TGGTGTCGGTTGCTATTG
Found at i:9684055 original size:19 final size:19
Alignment explanation
Indices: 9684020--9684060 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
9684010 TAGCTACTTT
9684020 TTTTTTTTACTTGTTTTTAG
1 TTTTTTTTACTTGTTTTT-G
9684040 TTTTTTTT-CTAT-TTTTTG
1 TTTTTTTTACT-TGTTTTTG
9684058 TTT
1 TTT
9684061 ACCTTTTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
18 4 0.20
19 7 0.35
20 9 0.45
ACGTcount: A:0.07, C:0.05, G:0.07, T:0.80
Consensus pattern (19 bp):
TTTTTTTTACTTGTTTTTG
Found at i:9684089 original size:22 final size:22
Alignment explanation
Indices: 9684016--9684089 Score: 57
Period size: 22 Copynumber: 3.5 Consensus size: 22
9684006 ATATTAGCTA
*
9684016 CTTT-TTTTTTTT-ACTTGTTT
1 CTTTGTTTTTTTTCACTTTTTT
*
9684036 -TTAGTTTTTTTTCTA-TTTTTT
1 CTTTGTTTTTTTTC-ACTTTTTT
* ***
9684057 GTTTACCTTTTTTCACTTTTTT
1 CTTTGTTTTTTTTCACTTTTTT
9684079 CTTTGTTTTTT
1 CTTTGTTTTTT
9684090 GTTTTGGATA
Statistics
Matches: 39, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
19 2 0.05
20 8 0.21
21 6 0.15
22 23 0.59
ACGTcount: A:0.07, C:0.11, G:0.05, T:0.77
Consensus pattern (22 bp):
CTTTGTTTTTTTTCACTTTTTT
Found at i:9684708 original size:19 final size:19
Alignment explanation
Indices: 9684673--9684712 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
9684663 TTCAATTTAA
9684673 ATATTTTTATTAGTAATTTT
1 ATATTTTTATTA-TAATTTT
9684693 ATATTTTATATT-TAATTTT
1 ATATTTT-TATTATAATTTT
9684712 A
1 A
9684713 AAACATATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.42
20 7 0.37
21 4 0.21
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (19 bp):
ATATTTTTATTATAATTTT
Found at i:9686884 original size:26 final size:26
Alignment explanation
Indices: 9686854--9686915 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
9686844 TAAATAACCA
**
9686854 AATTAATCAA-TTTTAATTTAATAAAT
1 AATTAATCAACTTAAAATTT-ATAAAT
*
9686880 AATTAAATCAACTTAAAATTTTTAAAT
1 AATT-AATCAACTTAAAATTTATAAAT
9686907 AATTAATCA
1 AATTAATCA
9686916 TAATTGAGTC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
26 9 0.29
27 15 0.48
28 7 0.23
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (26 bp):
AATTAATCAACTTAAAATTTATAAAT
Found at i:9689258 original size:29 final size:29
Alignment explanation
Indices: 9689215--9689306 Score: 89
Period size: 29 Copynumber: 3.1 Consensus size: 29
9689205 TCTTAAATTA
* *
9689215 TAATAAAATATTTAAATTTTAAATATAAT
1 TAATATAATAATTAAATTTTAAATATAAT
*
9689244 TAATATAATAATTAAATTATAAATTTATTAAT
1 TAATATAATAATTAAATTTTAAA--TA-TAAT
* * *
9689276 TAATATAAT-ATT-TATTTTTAATATAAA
1 TAATATAATAATTAAATTTTAAATATAAT
9689303 TAAT
1 TAAT
9689307 TTTAAATGAT
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
27 7 0.13
28 2 0.04
29 20 0.38
30 6 0.11
31 5 0.09
32 13 0.25
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (29 bp):
TAATATAATAATTAAATTTTAAATATAAT
Found at i:9689296 original size:18 final size:18
Alignment explanation
Indices: 9689261--9689303 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
9689251 ATAATTAAAT
9689261 TATAAATTTATTAATTAA
1 TATAAATTTATTAATTAA
*
9689279 TATAATATTTATT-TTTAA
1 TATAA-ATTTATTAATTAA
9689297 TATAAAT
1 TATAAAT
9689304 AATTTTAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 2 0.09
18 14 0.61
19 7 0.30
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TATAAATTTATTAATTAA
Found at i:9689305 original size:22 final size:22
Alignment explanation
Indices: 9689266--9689310 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
9689256 TAAATTATAA
9689266 ATTTATTAATTAATATAATATTT
1 ATTTATTAATTAATATAAT-TTT
9689289 ATTT-TTAATATAA-ATAATTTT
1 ATTTATTAAT-TAATATAATTTT
9689310 A
1 A
9689311 AATGATGACA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 4 0.19
22 10 0.48
23 7 0.33
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
ATTTATTAATTAATATAATTTT
Found at i:9689349 original size:28 final size:29
Alignment explanation
Indices: 9689306--9689363 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
9689296 ATATAAATAA
*
9689306 TTTTAAATGATGACATGATAAAATAAATT
1 TTTTAAATGATAACATGATAAAATAAATT
* **
9689335 TTTTAAAT-ATAACATTATTTAATAAATT
1 TTTTAAATGATAACATGATAAAATAAATT
9689363 T
1 T
9689364 AAAATTCAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 17 0.68
29 8 0.32
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (29 bp):
TTTTAAATGATAACATGATAAAATAAATT
Found at i:9689976 original size:23 final size:23
Alignment explanation
Indices: 9689927--9689976 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
9689917 ATTTATTTTT
* **
9689927 TTTTTAATTATAATTATAATATT
1 TTTTTAATTATAACTATAATAAA
9689950 TTTTTAATCT-TAACTATAATAAA
1 TTTTTAAT-TATAACTATAATAAA
9689973 TTTT
1 TTTT
9689977 ATTATTATCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 22 0.96
24 1 0.04
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (23 bp):
TTTTTAATTATAACTATAATAAA
Found at i:9689976 original size:25 final size:23
Alignment explanation
Indices: 9689925--9689970 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
9689915 AAATTTATTT
*
9689925 TTTTTTTAATTATAATTATAATA
1 TTTTTTTAATTATAACTATAATA
9689948 TTTTTTTAATCT-TAACTATAATA
1 TTTTTTTAAT-TATAACTATAATA
9689971 AATTTTATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 20 0.95
24 1 0.05
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (23 bp):
TTTTTTTAATTATAACTATAATA
Found at i:9694623 original size:2 final size:2
Alignment explanation
Indices: 9694611--9694647 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
9694601 GCTGAAGAGT
9694611 TA TA T- TA TA TA TA TA TA TA T- TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9694648 GAAGTTGAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 31 0.94
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:9694631 original size:15 final size:15
Alignment explanation
Indices: 9694611--9694645 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
9694601 GCTGAAGAGT
9694611 TATATTATATATATA
1 TATATTATATATATA
9694626 TATATTATATATATA
1 TATATTATATATATA
9694641 TATAT
1 TATAT
9694646 ATGAAGTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TATATTATATATATA
Found at i:9694866 original size:19 final size:19
Alignment explanation
Indices: 9694842--9694881 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
9694832 ATTGATAGTG
*
9694842 TATTAAATATTAATTTA-TA
1 TATTAAAAATT-ATTTACTA
9694861 TATTAAAAATTATTTACTA
1 TATTAAAAATTATTTACTA
9694880 TA
1 TA
9694882 AAATTAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (19 bp):
TATTAAAAATTATTTACTA
Found at i:9702860 original size:20 final size:20
Alignment explanation
Indices: 9702820--9702856 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
9702810 TAAAATAGTC
9702820 AAATAATAAAAATAAATTAT
1 AAATAATAAAAATAAATTAT
*
9702840 AAATTATAAAAA-AAATT
1 AAATAATAAAAATAAATT
9702857 TATATTTACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (20 bp):
AAATAATAAAAATAAATTAT
Found at i:9706496 original size:2 final size:2
Alignment explanation
Indices: 9706489--9706527 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
9706479 ATTGTGAAGC
*
9706489 TA TA TA TA TA GA -A TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9706528 GATAGATAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (2 bp):
TA
Found at i:9708433 original size:17 final size:17
Alignment explanation
Indices: 9708408--9708440 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
9708398 GAGGTTACTG
*
9708408 ATATGGAGGATTCTGGT
1 ATATAGAGGATTCTGGT
9708425 ATATAGAGGATTCTGG
1 ATATAGAGGATTCTGG
9708441 GGTTGAGCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.06, G:0.33, T:0.33
Consensus pattern (17 bp):
ATATAGAGGATTCTGGT
Found at i:9709690 original size:111 final size:111
Alignment explanation
Indices: 9709507--9709719 Score: 383
Period size: 111 Copynumber: 1.9 Consensus size: 111
9709497 AACCAAGGGC
* * *
9709507 AGACTTAGTTCCTGGGGTATGCATTTGGATTTTGTTGAATGCCCTTTCTGTAATCAGGTTGTCGA
1 AGACTTAGTTCCTAGGGTATGCATTTAGATTTTGTTGAATGCCCTTTCTGTAATCAGGTTATCGA
9709572 AACAAGGGTCTGTATTTTCTTCACTTGTGATTATTCAACCAAAAGT
66 AACAAGGGTCTGTATTTTCTTCACTTGTGATTATTCAACCAAAAGT
9709618 AGACTTAGTTCCTAGGGTATGCATTTAGATTTTGTTGAATGCCCCTTT-TGTAATCAGGTTATCG
1 AGACTTAGTTCCTAGGGTATGCATTTAGATTTTGTTGAATG-CCCTTTCTGTAATCAGGTTATCG
9709682 AAACAAGGGTCTGTATTTTCTTCACTTGTGATTATTCA
65 AAACAAGGGTCTGTATTTTCTTCACTTGTGATTATTCA
9709720 GAGTAGCTTT
Statistics
Matches: 98, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
111 92 0.94
112 6 0.06
ACGTcount: A:0.23, C:0.16, G:0.21, T:0.40
Consensus pattern (111 bp):
AGACTTAGTTCCTAGGGTATGCATTTAGATTTTGTTGAATGCCCTTTCTGTAATCAGGTTATCGA
AACAAGGGTCTGTATTTTCTTCACTTGTGATTATTCAACCAAAAGT
Found at i:9712477 original size:20 final size:20
Alignment explanation
Indices: 9712436--9712477 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
9712426 TTAATAAAGT
* **
9712436 TATTAACTTTACTAGTGTGA
1 TATTAACTTTACTAATAAGA
9712456 TATTAACTTTACTAATAAGA
1 TATTAACTTTACTAATAAGA
9712476 TA
1 TA
9712478 ATTTGGATGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.43
Consensus pattern (20 bp):
TATTAACTTTACTAATAAGA
Found at i:9712686 original size:26 final size:25
Alignment explanation
Indices: 9712642--9712696 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 25
9712632 TTTTTTGAAA
* * *
9712642 TTTTACAAAAATTAGATTTTAATTT
1 TTTTAAAAAAATTAGATTTAAAATT
*
9712667 TTTTAAAAAAATTAATATTTAAAATT
1 TTTTAAAAAAATT-AGATTTAAAATT
9712693 TTTT
1 TTTT
9712697 GAGATTTTCC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (25 bp):
TTTTAAAAAAATTAGATTTAAAATT
Found at i:9712694 original size:25 final size:25
Alignment explanation
Indices: 9712634--9712695 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 25
9712624 AATCATATTT
* *
9712634 TTTTGAAA-TTTTACAAAAATTAGA
1 TTTTAAAATTTTTAAAAAAATTAGA
**
9712658 TTTTAATTTTTTTAAAAAAATTA-A
1 TTTTAAAATTTTTAAAAAAATTAGA
9712682 TATTTAAAATTTTT
1 T-TTTAAAATTTTT
9712696 TGAGATTTTC
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
24 7 0.23
25 23 0.77
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (25 bp):
TTTTAAAATTTTTAAAAAAATTAGA
Found at i:9712765 original size:22 final size:21
Alignment explanation
Indices: 9712740--9712780 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
9712730 GATATTTTAA
9712740 ATATCTTAATTTTTTAAAAATC
1 ATAT-TTAATTTTTTAAAAATC
*
9712762 ATATTTTATTTTTTAAAAA
1 ATATTTAATTTTTTAAAAA
9712781 AAATCAATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (21 bp):
ATATTTAATTTTTTAAAAATC
Found at i:9712859 original size:23 final size:24
Alignment explanation
Indices: 9712833--9712878 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
9712823 TAAAATATTA
* *
9712833 AATTT-ATTTTTTGAATTTTTTTG
1 AATTTGATTTGTTAAATTTTTTTG
9712856 AATTTGATTTGTTAAATTTTTTT
1 AATTTGATTTGTTAAATTTTTTT
9712879 TCAAATTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.67
Consensus pattern (24 bp):
AATTTGATTTGTTAAATTTTTTTG
Found at i:9713239 original size:19 final size:19
Alignment explanation
Indices: 9713206--9713250 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
9713196 CATTTAAATA
* *
9713206 TTAAAAAATATAAAATATT
1 TTAAAAAACATAAAATAAT
9713225 TCTAAAAAACA-AAAATAAT
1 T-TAAAAAACATAAAATAAT
9713244 TTAAAAA
1 TTAAAAA
9713251 TAGAAAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 6 0.26
19 9 0.39
20 8 0.35
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (19 bp):
TTAAAAAACATAAAATAAT
Found at i:9713257 original size:18 final size:19
Alignment explanation
Indices: 9713209--9713258 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 19
9713199 TTAAATATTA
* *
9713209 AAAAATATAAAATATTTCT
1 AAAAATAAAAAATAATTCT
9713228 AAAAA-ACAAAAATAATT-T
1 AAAAATA-AAAAATAATTCT
*
9713246 AAAAATAGAAAAT
1 AAAAATAAAAAAT
9713259 TATATAAACA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
18 12 0.46
19 14 0.54
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (19 bp):
AAAAATAAAAAATAATTCT
Found at i:9713809 original size:20 final size:21
Alignment explanation
Indices: 9713762--9713811 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
9713752 TATTCACATT
*
9713762 ATCACATCAGTAAAATTAATA
1 ATCACATCAGTAAAATTAACA
* * *
9713783 GTTACATCA-TTAAATTAACA
1 ATCACATCAGTAAAATTAACA
9713803 ATCACATCA
1 ATCACATCA
9713812 ATATTTTTAT
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.48, C:0.18, G:0.04, T:0.30
Consensus pattern (21 bp):
ATCACATCAGTAAAATTAACA
Found at i:9716428 original size:13 final size:13
Alignment explanation
Indices: 9716410--9716443 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
9716400 TGCACCTACT
9716410 TCAAATCAAAGAA
1 TCAAATCAAAGAA
* *
9716423 TCAAATTAAATAA
1 TCAAATCAAAGAA
9716436 TCAAATCA
1 TCAAATCA
9716444 TATGATCGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.59, C:0.15, G:0.03, T:0.24
Consensus pattern (13 bp):
TCAAATCAAAGAA
Found at i:9726752 original size:18 final size:18
Alignment explanation
Indices: 9726724--9726786 Score: 60
Period size: 18 Copynumber: 3.4 Consensus size: 18
9726714 TTTTTATTAA
9726724 TTTTTAGATATATTAAAAT
1 TTTTTA-ATATATTAAAAT
9726743 TGTTTT-ATATA-T-AAAT
1 T-TTTTAATATATTAAAAT
9726759 CTTTTTAAATATATTAAAAT
1 -TTTTT-AATATATTAAAAT
9726779 TTTATTAA
1 TTT-TTAA
9726787 AATAATTTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
16 8 0.22
17 2 0.05
18 10 0.27
19 7 0.19
20 10 0.27
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (18 bp):
TTTTTAATATATTAAAAT
Found at i:9726787 original size:20 final size:19
Alignment explanation
Indices: 9726724--9726787 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 19
9726714 TTTTTATTAA
*
9726724 TTTTTAGATATATTAAAAT
1 TTTTTAAATATATTAAAAT
9726743 TGTTTT--ATATA-T-AAAT
1 T-TTTTAAATATATTAAAAT
9726759 CTTTTTAAATATATTAAAAT
1 -TTTTTAAATATATTAAAAT
9726779 TTTATTAAA
1 TTT-TTAAA
9726788 ATAATTTATA
Statistics
Matches: 38, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
16 8 0.21
17 2 0.05
18 10 0.26
19 5 0.13
20 13 0.34
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (19 bp):
TTTTTAAATATATTAAAAT
Found at i:9739824 original size:14 final size:15
Alignment explanation
Indices: 9739795--9739828 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
9739785 ACCCATATCT
*
9739795 AAACAGCAAACTAAA
1 AAACAGCAAACAAAA
9739810 AAACAG-AAACAAAA
1 AAACAGCAAACAAAA
9739824 AAACA
1 AAACA
9739829 AAGACAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.74, C:0.18, G:0.06, T:0.03
Consensus pattern (15 bp):
AAACAGCAAACAAAA
Found at i:9740957 original size:17 final size:17
Alignment explanation
Indices: 9740937--9740969 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
9740927 TTCTAAAACC
9740937 CCTAAAATCCAAAATCT
1 CCTAAAATCCAAAATCT
*
9740954 CCTAAAATTCAAAATC
1 CCTAAAATCCAAAATC
9740970 CAAAAATTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.24
Consensus pattern (17 bp):
CCTAAAATCCAAAATCT
Found at i:9740977 original size:15 final size:15
Alignment explanation
Indices: 9740957--9740992 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
9740947 AAAATCTCCT
9740957 AAAATTCAAAATCCA
1 AAAATTCAAAATCCA
9740972 AAAATTCAAAATCCA
1 AAAATTCAAAATCCA
9740987 AAAATT
1 AAAATT
9740993 TGAAACCCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.61, C:0.17, G:0.00, T:0.22
Consensus pattern (15 bp):
AAAATTCAAAATCCA
Found at i:9741031 original size:32 final size:33
Alignment explanation
Indices: 9740931--9741074 Score: 100
Period size: 32 Copynumber: 4.5 Consensus size: 33
9740921 CTAAGTTTCT
* *
9740931 AAAACCCCT-AAAATCCAAAATCTCCTAAAATTC
1 AAAACCCCTAAAAATCCAAAA-CCCCTAAAATCC
* * * * **
9740964 AAAA-TCC-AAAAATTCAAAA-TCCAAAAATTT
1 AAAACCCCTAAAAATCCAAAACCCCTAAAATCC
* * * *
9740994 GAAACCCCTAAAAATCCAAAATCCTTTAAATCC
1 AAAACCCCTAAAAATCCAAAACCCCTAAAATCC
* * *
9741027 -AAACCACTTAAAATCCGAAACCCCTAAAATCC
1 AAAACCCCTAAAAATCCAAAACCCCTAAAATCC
*
9741059 AAAACCCCAAAAAATC
1 AAAACCCCTAAAAATC
9741075 TGAAATTCTA
Statistics
Matches: 84, Mismatches: 22, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
30 12 0.14
31 2 0.02
32 49 0.58
33 21 0.25
ACGTcount: A:0.51, C:0.28, G:0.01, T:0.19
Consensus pattern (33 bp):
AAAACCCCTAAAAATCCAAAACCCCTAAAATCC
Found at i:9741071 original size:16 final size:16
Alignment explanation
Indices: 9740931--9741070 Score: 90
Period size: 16 Copynumber: 8.8 Consensus size: 16
9740921 CTAAGTTTCT
9740931 AAAACCCCTAAAATCC
1 AAAACCCCTAAAATCC
* *
9740947 AAAATCTCCTAAAATTC
1 AAAA-CCCCTAAAATCC
* * *
9740964 AAAA-TCCAAAAATTC
1 AAAACCCCTAAAATCC
* * **
9740979 AAAA-TCCAAAAATTT
1 AAAACCCCTAAAATCC
*
9740994 GAAACCCCTAAAAATCC
1 AAAACCCCT-AAAATCC
* * *
9741011 AAAATCCTTTAAATCC
1 AAAACCCCTAAAATCC
*
9741027 -AAACCACTTAAAATCC
1 AAAACC-CCTAAAATCC
*
9741043 GAAACCCCTAAAATCC
1 AAAACCCCTAAAATCC
9741059 AAAACCCC-AAAA
1 AAAACCCCTAAAA
9741071 AATCTGAAAT
Statistics
Matches: 102, Mismatches: 17, Indels: 11
0.78 0.13 0.08
Matches are distributed among these distances:
15 35 0.34
16 37 0.36
17 30 0.29
ACGTcount: A:0.51, C:0.29, G:0.01, T:0.19
Consensus pattern (16 bp):
AAAACCCCTAAAATCC
Found at i:9741123 original size:15 final size:16
Alignment explanation
Indices: 9741103--9741138 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
9741093 AACTCTTAAA
9741103 TCAAAAT-CCTAAAAT
1 TCAAAATCCCTAAAAT
9741118 TCAAAATCCCTAAAAT
1 TCAAAATCCCTAAAAT
*
9741134 CCAAA
1 TCAAA
9741139 CCCTTAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.53, C:0.25, G:0.00, T:0.22
Consensus pattern (16 bp):
TCAAAATCCCTAAAAT
Found at i:9741147 original size:14 final size:14
Alignment explanation
Indices: 9741100--9741155 Score: 67
Period size: 14 Copynumber: 3.9 Consensus size: 14
9741090 TTAAACTCTT
*
9741100 AAATCAAAATCCTA
1 AAATCAAAACCCTA
9741114 AAATTCAAAATCCCTA
1 AAA-TCAAAA-CCCTA
* *
9741130 AAATCCAAACCCTT
1 AAATCAAAACCCTA
9741144 AAATCAAAACCC
1 AAATCAAAACCC
9741156 CAAACCTCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
14 18 0.50
15 11 0.31
16 7 0.19
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.20
Consensus pattern (14 bp):
AAATCAAAACCCTA
Found at i:9741210 original size:14 final size:14
Alignment explanation
Indices: 9741157--9741210 Score: 56
Period size: 14 Copynumber: 3.7 Consensus size: 14
9741147 TCAAAACCCC
*
9741157 AAACCTCAAAATCA
1 AAACCTTAAAATCA
*
9741171 AAACCTTAAAATCTTC
1 AAACCTTAAAATC--A
9741187 AAA-CTCTAAAATCA
1 AAACCT-TAAAATCA
9741201 AAACCTTAAA
1 AAACCTTAAA
9741211 CCTTCAATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
14 19 0.58
15 4 0.12
16 10 0.30
ACGTcount: A:0.54, C:0.24, G:0.00, T:0.22
Consensus pattern (14 bp):
AAACCTTAAAATCA
Found at i:9741225 original size:30 final size:30
Alignment explanation
Indices: 9741156--9741228 Score: 96
Period size: 30 Copynumber: 2.4 Consensus size: 30
9741146 ATCAAAACCC
*
9741156 CAAAC-CTCAAAATCAAAACCTTAAAATCTT
1 CAAACTCT-AAAATCAAAACCTTAAAACCTT
9741186 CAAACTCTAAAATCAAAACCTT-AAACCTT
1 CAAACTCTAAAATCAAAACCTTAAAACCTT
*
9741215 CAATATTCTAAAAT
1 CAA-ACTCTAAAAT
9741229 TCAAGCTTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 9 0.23
30 28 0.72
31 2 0.05
ACGTcount: A:0.49, C:0.25, G:0.00, T:0.26
Consensus pattern (30 bp):
CAAACTCTAAAATCAAAACCTTAAAACCTT
Found at i:9750873 original size:21 final size:21
Alignment explanation
Indices: 9750805--9750873 Score: 59
Period size: 20 Copynumber: 3.2 Consensus size: 21
9750795 AAACTTTTAA
*
9750805 TAAATAATTTAAAAGAAAAAGTT
1 TAAAAAATTTAAAA-AAAAAG-T
** *
9750828 TAAAAACCTAAAAAAAAAAG-
1 TAAAAAATTTAAAAAAAAAGT
* *
9750848 AAAAAAATTTAAAAAAAATGT
1 TAAAAAATTTAAAAAAAAAGT
9750869 TAAAA
1 TAAAA
9750874 TGGCACGTGA
Statistics
Matches: 35, Mismatches: 10, Indels: 4
0.71 0.20 0.08
Matches are distributed among these distances:
20 15 0.43
21 4 0.11
22 6 0.17
23 10 0.29
ACGTcount: A:0.70, C:0.03, G:0.06, T:0.22
Consensus pattern (21 bp):
TAAAAAATTTAAAAAAAAAGT
Found at i:9751204 original size:17 final size:18
Alignment explanation
Indices: 9751179--9751224 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
9751169 TAATTTTTTT
* *
9751179 AAAATTTAAAAATGA-AA
1 AAAAATTAAAAAGGATAA
9751196 AAAAATTAAAAAGGATAA
1 AAAAATTAAAAAGGATAA
*
9751214 AAAAAATAAAA
1 AAAAATTAAAA
9751225 GCAAAAAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 13 0.52
18 12 0.48
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (18 bp):
AAAAATTAAAAAGGATAA
Found at i:9759826 original size:36 final size:37
Alignment explanation
Indices: 9759749--9759886 Score: 113
Period size: 36 Copynumber: 3.8 Consensus size: 37
9759739 TTAGGGGTAT
* * *
9759749 ATGACATTCATTTTCATTGATGCTTGCATTTACGATG
1 ATGACATTAATTTTCATTGATACTTGCATTTACGAAG
* **
9759786 -TGACATTAATTTTCATTTATACTTGTGTTTA-GAAG
1 ATGACATTAATTTTCATTGATACTTGCATTTACGAAG
* * * *
9759821 ATGACATTGATTTTTATTGATA-TGTGCACTTA-GAAC
1 ATGACATTAATTTTCATTGATACT-TGCATTTACGAAG
* * * *
9759857 ATGATATTAACTTTAATTGATTCTTGCATT
1 ATGACATTAATTTTCATTGATACTTGCATT
9759887 CAAGGCATTC
Statistics
Matches: 79, Mismatches: 19, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
35 4 0.05
36 74 0.94
37 1 0.01
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.46
Consensus pattern (37 bp):
ATGACATTAATTTTCATTGATACTTGCATTTACGAAG
Found at i:9760032 original size:137 final size:137
Alignment explanation
Indices: 9759786--9760063 Score: 556
Period size: 137 Copynumber: 2.0 Consensus size: 137
9759776 ATTTACGATG
9759786 TGACATTAATTTTCATTTATACTTGTGTTTAGAAGATGACATTGATTTTTATTGATATGTGCACT
1 TGACATTAATTTTCATTTATACTTGTGTTTAGAAGATGACATTGATTTTTATTGATATGTGCACT
9759851 TAGAACATGATATTAACTTTAATTGATTCTTGCATTCAAGGCATTCATTGCATGTAAGAAGGATA
66 TAGAACATGATATTAACTTTAATTGATTCTTGCATTCAAGGCATTCATTGCATGTAAGAAGGATA
9759916 GAAATAT
131 GAAATAT
9759923 TGACATTAATTTTCATTTATACTTGTGTTTAGAAGATGACATTGATTTTTATTGATATGTGCACT
1 TGACATTAATTTTCATTTATACTTGTGTTTAGAAGATGACATTGATTTTTATTGATATGTGCACT
9759988 TAGAACATGATATTAACTTTAATTGATTCTTGCATTCAAGGCATTCATTGCATGTAAGAAGGATA
66 TAGAACATGATATTAACTTTAATTGATTCTTGCATTCAAGGCATTCATTGCATGTAAGAAGGATA
9760053 GAAATAT
131 GAAATAT
9760060 TGAC
1 TGAC
9760064 TCTTGATTAA
Statistics
Matches: 141, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
137 141 1.00
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.41
Consensus pattern (137 bp):
TGACATTAATTTTCATTTATACTTGTGTTTAGAAGATGACATTGATTTTTATTGATATGTGCACT
TAGAACATGATATTAACTTTAATTGATTCTTGCATTCAAGGCATTCATTGCATGTAAGAAGGATA
GAAATAT
Found at i:9766460 original size:28 final size:27
Alignment explanation
Indices: 9766429--9766482 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 27
9766419 TTTTTTTTAT
* *
9766429 TATTTATAAATATGTTTATTTATATATA
1 TATTAATAAATATGTTCATTTA-ATATA
9766457 TATTAATAAATATGTTCATTTAATAT
1 TATTAATAAATATGTTCATTTAATAT
9766483 TCGTGAACGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 4 0.17
28 20 0.83
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.54
Consensus pattern (27 bp):
TATTAATAAATATGTTCATTTAATATA
Found at i:9767508 original size:85 final size:86
Alignment explanation
Indices: 9767345--9767518 Score: 341
Period size: 85 Copynumber: 2.0 Consensus size: 86
9767335 TGTATAGGCA
9767345 ATAATAATCATTATTATTTTTAATAATATAAAATAATTAAACATATAATATCAAGAACAACACAT
1 ATAATAATCATTATTATTTTTAATAATATAAAATAATTAAACATATAATATCAAGAACAACACAT
9767410 ATGATAAAATGATTAATATAT
66 ATGATAAAATGATTAATATAT
9767431 ATAATAATCATTATTATTTTTAATAATATAAAATAATT-AACATATAATATCAAGAACAACACAT
1 ATAATAATCATTATTATTTTTAATAATATAAAATAATTAAACATATAATATCAAGAACAACACAT
9767495 ATGATAAAATGATTAATATAT
66 ATGATAAAATGATTAATATAT
9767516 ATA
1 ATA
9767519 TATATAATAA
Statistics
Matches: 88, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
85 50 0.57
86 38 0.43
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.36
Consensus pattern (86 bp):
ATAATAATCATTATTATTTTTAATAATATAAAATAATTAAACATATAATATCAAGAACAACACAT
ATGATAAAATGATTAATATAT
Found at i:9772993 original size:14 final size:15
Alignment explanation
Indices: 9772970--9773004 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
9772960 TTTTTAAATG
9772970 GTATAAAATATTTAT
1 GTATAAAATATTTAT
*
9772985 -TATATAATATTTAT
1 GTATAAAATATTTAT
9772999 GTATAA
1 GTATAA
9773005 TTAAATAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 2
0.81 0.10 0.10
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (15 bp):
GTATAAAATATTTAT
Found at i:9781905 original size:20 final size:20
Alignment explanation
Indices: 9781877--9781914 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
9781867 ATAAAATTTT
* *
9781877 TTTATAAAATTATAAAAAGG
1 TTTAAAAAAATATAAAAAGG
9781897 TTTAAAAAAATATAAAAA
1 TTTAAAAAAATATAAAAA
9781915 TTTTATCAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (20 bp):
TTTAAAAAAATATAAAAAGG
Found at i:9785403 original size:25 final size:25
Alignment explanation
Indices: 9785354--9785418 Score: 64
Period size: 24 Copynumber: 2.7 Consensus size: 25
9785344 AACATATTTA
* *
9785354 TAAAAGATAAT-AATATTTTATATT
1 TAAAAGAAAATAAATATTCTATATT
9785378 TAAAAGAAAATAAATATATCTA-ATT
1 TAAAAGAAAATAAATAT-TCTATATT
**
9785403 T-AATCAAAATAAATAT
1 TAAAAGAAAATAAATAT
9785419 CTTTTAAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
24 23 0.66
25 9 0.26
26 3 0.09
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (25 bp):
TAAAAGAAAATAAATATTCTATATT
Found at i:9785799 original size:20 final size:20
Alignment explanation
Indices: 9785776--9785830 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 20
9785766 ATAAAAATGT
9785776 TATTATAAAAATAATAAAA-A
1 TATTATAAAAA-AATAAAATA
* *
9785796 TATTTTAAATAAATAAAATA
1 TATTATAAAAAAATAAAATA
*
9785816 TATTTATTAAAAAAT
1 TA-TTATAAAAAAAT
9785831 GTATAATGGT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 7 0.25
20 12 0.43
21 9 0.32
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
TATTATAAAAAAATAAAATA
Found at i:9785807 original size:18 final size:20
Alignment explanation
Indices: 9785784--9785820 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
9785774 GTTATTATAA
9785784 AAAT-AATAAAA-ATATTTT
1 AAATAAATAAAATATATTTT
9785802 AAATAAATAAAATATATTT
1 AAATAAATAAAATATATTT
9785821 ATTAAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 7 0.41
20 6 0.35
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
AAATAAATAAAATATATTTT
Found at i:9785848 original size:23 final size:23
Alignment explanation
Indices: 9785818--9785871 Score: 92
Period size: 23 Copynumber: 2.4 Consensus size: 23
9785808 ATAAAATATA
*
9785818 TTTATTAAAAAATGTATAATGGT
1 TTTATTAAAAAATATATAATGGT
9785841 TTTATTAAAAAATATATAATGGT
1 TTTATTAAAAAATATATAATGGT
9785864 TTT-TTAAA
1 TTTATTAAA
9785872 TTTATTCACA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 5 0.17
23 25 0.83
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.46
Consensus pattern (23 bp):
TTTATTAAAAAATATATAATGGT
Found at i:9794915 original size:228 final size:228
Alignment explanation
Indices: 9794525--9795220 Score: 914
Period size: 228 Copynumber: 3.1 Consensus size: 228
9794515 GATACTAATC
* * * * *
9794525 GGGCTAGGAATAATGATTTGGAC-TTGGTATCTGGTCATGCAACCAAAGATTCCAGTTGGGGGAA
1 GGGCTAAGAAAAATGATTCGGACTTTGG-ATCTGGTGATGCAACCAAAGATTCTAGTTGGGGGAA
9794589 GAAAAGTGACTGGAACTCAGGATCTGCAG-TGGCAAATCAGGATTCAAACTGGGGTAAGAAAAGC
65 GAAAAGTGACTGGAACTCAGGATCTGCAGAT-GCAAATCAGGATTCAAACTGGGGTAAGAAAAGC
* * *
9794653 AGTTGGGGTTCTGGAAATATTGATGCTGGCCAAGACACTGGTGGGAGAAAAAGGGACAGTTGGAA
129 AGTTGGGGTACTGGAACTATTGATGCTGGCCAAGACTCTGGTGGGAGAAAAAGGGACAGTTGGAA
* * *
9794718 TTCTGGTTCTGGTAATGCCAACCAGGATCCTGGTT
194 CTCTGGTTCTAGTAATGCAAACCAGGATCCTGGTT
* *
9794753 GGGCTAAGAAAAATGATTCGGACTTTGGATCTGGTGATGCAACCAAAGATTCTAGTTGTGGAAAG
1 GGGCTAAGAAAAATGATTCGGACTTTGGATCTGGTGATGCAACCAAAGATTCTAGTTGGGGGAAG
* * *
9794818 AAAAGCGACTGGAAATCAGGATCTGCAGATGCAAATCAGGATTCAAACTGGGGTAAAAAAAGCAG
66 AAAAGTGACTGGAACTCAGGATCTGCAGATGCAAATCAGGATTCAAACTGGGGTAAGAAAAGCAG
* * ** * * *** *
9794883 TTGGGGTGCTGGTACTATTGATGCCAGCCAAGACTCTGGTTGGAGCAAAAGGGGTGGTTGGGACT
131 TTGGGGTACTGGAACTATTGATGCTGGCCAAGACTCTGGTGGGAGAAAAAGGGACAGTTGGAACT
* *
9794948 CTGGTTCTAGTAGTGCAAACCAGGATTCTGGTT
196 CTGGTTCTAGTAATGCAAACCAGGATCCTGGTT
* * * *
9794981 GGGCTAAGAAAAATGATTCTGATTTTGGATCTGGTGATTCAACCAAAGATTCTGGTTGGGGGAAG
1 GGGCTAAGAAAAATGATTCGGACTTTGGATCTGGTGATGCAACCAAAGATTCTAGTTGGGGGAAG
* *
9795046 AAAAGTGACTGGAACTCTGGATCTGCAGATGCAAATCAGGATTCAACCTGGGGTAAGAAAAGCAG
66 AAAAGTGACTGGAACTCAGGATCTGCAGATGCAAATCAGGATTCAAACTGGGGTAAGAAAAGCAG
* * * * *
9795111 TTGGGGTACTGGAACTGTTGATTCTGGCCAAGACTCTGGTTGGGATAAAAAAGG-CAATTGGAAC
131 TTGGGGTACTGGAACTATTGATGCTGGCCAAGACTCTGG-TGGGAGAAAAAGGGACAGTTGGAAC
* * * ** * *
9795175 CCTGGTTCCAGTAGTGCAGGCCAGGATTCAGGTT
195 TCTGGTTCTAGTAATGCAAACCAGGATCCTGGTT
9795209 GGGGC-AAGAAAA
1 -GGGCTAAGAAAA
9795221 GCAACTGGAA
Statistics
Matches: 407, Mismatches: 57, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
228 388 0.95
229 19 0.05
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (228 bp):
GGGCTAAGAAAAATGATTCGGACTTTGGATCTGGTGATGCAACCAAAGATTCTAGTTGGGGGAAG
AAAAGTGACTGGAACTCAGGATCTGCAGATGCAAATCAGGATTCAAACTGGGGTAAGAAAAGCAG
TTGGGGTACTGGAACTATTGATGCTGGCCAAGACTCTGGTGGGAGAAAAAGGGACAGTTGGAACT
CTGGTTCTAGTAATGCAAACCAGGATCCTGGTT
Found at i:9795134 original size:114 final size:114
Alignment explanation
Indices: 9794561--9795132 Score: 346
Period size: 114 Copynumber: 5.0 Consensus size: 114
9794551 GTATCTGGTC
** *
9794561 ATGCAACCAAAGATTCCAGTTGGGGGAAGAAAAGTGACTGGAACTCAGGATCTGCAG-TGGCAAA
1 ATGCAACCAAAGATTCTGGTTGGGGGAAGAAAAGTGACTGGAACTCTGGATCTGCAGAT-GCAAA
* * *
9794625 TCAGGATTCAAACTGGGGTAAGAAAAGCAGTTGGGGTTCTGGAAATATTG
65 TCAGGATTCAAACTGGGGTAAGAAAAGCAGTTGGGGTACTGGAACTGTTG
** ** * * * * *
9794675 ATGCTGGCC-AAGACACTGG-TGGGAG-A-AAAAGGGACAGTTGGAATTCTGGTTCTGGTA-ATG
1 ATGC-AACCAAAGATTCTGGTTGGGGGAAGAAAAGTGAC---TGGAACTCTGGATCT-GCAGATG
* * * **** * * * *
9794735 CCAACCAGGATCCTGGTTGGGCTAAGAAAA--ATGATT-CGG-ACTTTGGATCTGGTG
61 CAAATCAGGATTCAAACTGGGGTAAGAAAAGCA-G-TTGGGGTAC--TGGAACTGTTG
* * * * * *
9794789 ATGCAACCAAAGATTCTAGTTGTGGAAAGAAAAGCGACTGGAAATCAGGATCTGCAGATGCAAAT
1 ATGCAACCAAAGATTCTGGTTGGGGGAAGAAAAGTGACTGGAACTCTGGATCTGCAGATGCAAAT
* * * *
9794854 CAGGATTCAAACTGGGGTAAAAAAAGCAGTTGGGGTGCTGGTACTATTG
66 CAGGATTCAAACTGGGGTAAGAAAAGCAGTTGGGGTACTGGAACTGTTG
* * * * ** ** * * *
9794903 ATGCCAGCC-AAGACTCTGGTTGGAGCAA-AAGGGGTGGTTGGGACTCTGGTTCTAGTAG-TGCA
1 ATG-CAACCAAAGATTCTGGTTGGGGGAAGAA-AAGTGACTGGAACTCTGGATCT-GCAGATGCA
* **** * ** * ** * *
9794965 AACCAGGATTCTGGTTGGGCTAAGAAAA--ATGATTCTGATTTTGGATCTGGTG
63 AATCAGGATTCAAACTGGGGTAAGAAAAGCA-G-TTGGGGTACTGGAACTGTTG
*
9795017 ATTCAACCAAAGATTCTGGTTGGGGGAAGAAAAGTGACTGGAACTCTGGATCTGCAGATGCAAAT
1 ATGCAACCAAAGATTCTGGTTGGGGGAAGAAAAGTGACTGGAACTCTGGATCTGCAGATGCAAAT
*
9795082 CAGGATTCAACCTGGGGTAAGAAAAGCAGTTGGGGTACTGGAACTGTTG
66 CAGGATTCAAACTGGGGTAAGAAAAGCAGTTGGGGTACTGGAACTGTTG
9795131 AT
1 AT
9795133 TCTGGCCAAG
Statistics
Matches: 318, Mismatches: 111, Indels: 58
0.65 0.23 0.12
Matches are distributed among these distances:
111 8 0.03
112 4 0.01
113 22 0.07
114 251 0.79
115 21 0.07
116 4 0.01
117 8 0.03
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.24
Consensus pattern (114 bp):
ATGCAACCAAAGATTCTGGTTGGGGGAAGAAAAGTGACTGGAACTCTGGATCTGCAGATGCAAAT
CAGGATTCAAACTGGGGTAAGAAAAGCAGTTGGGGTACTGGAACTGTTG
Found at i:9795452 original size:33 final size:33
Alignment explanation
Indices: 9795386--9795503 Score: 107
Period size: 33 Copynumber: 3.6 Consensus size: 33
9795376 GGCTCAGATA
* * *
9795386 GAGGCTTTAGAGGTAGATGG-GATACAGACAGAG
1 GAGGTTTTGGAGGTAGAGGGAGAT-CAGACAGAG
* *
9795419 GAGGTTTTCGG-GGTAGAGGTAGATCAGATAGAG
1 GAGGTTTT-GGAGGTAGAGGGAGATCAGACAGAG
* * *
9795452 GAGGCTATGGAGG-ACGAGGGAGATCTGACAGAG
1 GAGGTTTTGGAGGTA-GAGGGAGATCAGACAGAG
*
9795485 GAGGTTTTGGTGGTAGAGG
1 GAGGTTTTGGAGGTAGAGG
9795504 CGGTGATGGA
Statistics
Matches: 67, Mismatches: 13, Indels: 10
0.74 0.14 0.11
Matches are distributed among these distances:
32 3 0.04
33 59 0.88
34 5 0.07
ACGTcount: A:0.28, C:0.08, G:0.44, T:0.20
Consensus pattern (33 bp):
GAGGTTTTGGAGGTAGAGGGAGATCAGACAGAG
Found at i:9795518 original size:30 final size:30
Alignment explanation
Indices: 9795482--9795593 Score: 127
Period size: 30 Copynumber: 3.7 Consensus size: 30
9795472 AGATCTGACA
* * *
9795482 GAGGAGGTTTTGGTGGTAGAGGCGGTGATG
1 GAGGAGGCTATGGAGGTAGAGGCGGTGATG
* *
9795512 GAGGAGGCTATGGAGGTAGAGGTGGTGATA
1 GAGGAGGCTATGGAGGTAGAGGCGGTGATG
* *
9795542 GAGGTGGCTATGGAGGTAGAAGCGGTGATAG
1 GAGGAGGCTATGGAGGTAGAGGCGGTGAT-G
* *
9795573 G-GAAGGCTTTGGAGGTAGAGG
1 GAGGAGGCTATGGAGGTAGAGG
9795594 ACGTGGAAGG
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
30 67 0.99
31 1 0.01
ACGTcount: A:0.23, C:0.04, G:0.51, T:0.21
Consensus pattern (30 bp):
GAGGAGGCTATGGAGGTAGAGGCGGTGATG
Found at i:9795545 original size:60 final size:60
Alignment explanation
Indices: 9795481--9795593 Score: 147
Period size: 60 Copynumber: 1.9 Consensus size: 60
9795471 GAGATCTGAC
* * * * *
9795481 AGAGGAGGTTTTGGTGGTAGAGGCGGTGAT-GGAGGAGGCTATGGAGGTAGAGGTGGTGAT
1 AGAGGAGGCTATGGAGGTAGAAGCGGTGATAGG-GAAGGCTATGGAGGTAGAGGTGGTGAT
* *
9795541 AGAGGTGGCTATGGAGGTAGAAGCGGTGATAGGGAAGGCTTTGGAGGTAGAGG
1 AGAGGAGGCTATGGAGGTAGAAGCGGTGATAGGGAAGGCTATGGAGGTAGAGG
9795594 ACGTGGAAGG
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
60 43 0.96
61 2 0.04
ACGTcount: A:0.24, C:0.04, G:0.50, T:0.21
Consensus pattern (60 bp):
AGAGGAGGCTATGGAGGTAGAAGCGGTGATAGGGAAGGCTATGGAGGTAGAGGTGGTGAT
Found at i:9801420 original size:12 final size:12
Alignment explanation
Indices: 9801403--9801434 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
9801393 TTAATATATC
9801403 AATACAAATTAT
1 AATACAAATTAT
9801415 AATACAAATTAT
1 AATACAAATTAT
9801427 AATACAAA
1 AATACAAA
9801435 AATTTTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.28
Consensus pattern (12 bp):
AATACAAATTAT
Found at i:9801686 original size:23 final size:22
Alignment explanation
Indices: 9801654--9801698 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
9801644 ATTTGATTTG
9801654 ATTTTATATTTATAATATTTAAA
1 ATTTTATATTT-TAATATTTAAA
* *
9801677 ATTTTTTATTTTTATATTTAAA
1 ATTTTATATTTTAATATTTAAA
9801699 TTTGATTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (22 bp):
ATTTTATATTTTAATATTTAAA
Found at i:9801797 original size:21 final size:21
Alignment explanation
Indices: 9801771--9801812 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
9801761 ATATTATTTT
9801771 TAATATA-AAATAAAATAAATA
1 TAATATATAAATAAAA-AAATA
*
9801792 TAATATATAAATATAAAAATA
1 TAATATATAAATAAAAAAATA
9801813 AAAATTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (21 bp):
TAATATATAAATAAAAAAATA
Found at i:9801805 original size:6 final size:6
Alignment explanation
Indices: 9801772--9801814 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
9801762 TATTATTTTT
*
9801772 AATATA AA-ATA AA-ATA AATATA ATATATA AATATA AAAATA AA
1 AATATA AATATA AATATA AATATA A-ATATA AATATA AATATA AA
9801815 AATTTTAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
5 10 0.29
6 18 0.53
7 6 0.18
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (6 bp):
AATATA
Found at i:9805179 original size:30 final size:30
Alignment explanation
Indices: 9805125--9805181 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
9805115 TTTTATTATA
* *
9805125 ATTAATTAATTTTTAATTTTTTTATTTCGG
1 ATTAATTAATTTTTAATATATTTATTTCGG
9805155 ATTAATTAAGTTTTTAA-ATATTTATTT
1 ATTAATTAA-TTTTTAATATATTTATTT
9805182 TCATTTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 17 0.71
31 7 0.29
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (30 bp):
ATTAATTAATTTTTAATATATTTATTTCGG
Found at i:9805190 original size:30 final size:31
Alignment explanation
Indices: 9805156--9805222 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 31
9805146 TTATTTCGGA
* * * *
9805156 TTAATTAAGTTTTTAAATATTTATTTTCA-T
1 TTAATTAAATTCTTAAACATATATTTTCACT
9805186 TTAATTAAATTCTTAAACATATATTTTCACT
1 TTAATTAAATTCTTAAACATATATTTTCACT
9805217 TTAATT
1 TTAATT
9805223 GAACCCTTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 25 0.78
31 7 0.22
ACGTcount: A:0.36, C:0.07, G:0.01, T:0.55
Consensus pattern (31 bp):
TTAATTAAATTCTTAAACATATATTTTCACT
Found at i:9805232 original size:31 final size:30
Alignment explanation
Indices: 9805168--9805232 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
9805158 AATTAAGTTT
* * **
9805168 TTAAATATTTATTTTCATTTAATTAAATTC
1 TTAAACATATATTTTCATTTAATTAAACCC
*
9805198 TTAAACATATATTTTCACTTTAATTGAACCC
1 TTAAACATATATTTTCA-TTTAATTAAACCC
9805229 TTAA
1 TTAA
9805233 CTTAAAGAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 15 0.52
31 14 0.48
ACGTcount: A:0.37, C:0.12, G:0.02, T:0.49
Consensus pattern (30 bp):
TTAAACATATATTTTCATTTAATTAAACCC
Found at i:9807938 original size:3 final size:3
Alignment explanation
Indices: 9807930--9807971 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
9807920 GCAAAAAAGA
9807930 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
9807972 AACTTTAATC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:9822690 original size:7 final size:6
Alignment explanation
Indices: 9822656--9822776 Score: 54
Period size: 6 Copynumber: 19.7 Consensus size: 6
9822646 GGGTAAGCCC
* **
9822656 ATTTTT -TTTTT AGTTTATT -TTTGT ATTTTT CATTTTT A-TTTT ATTTAC
1 ATTTTT ATTTTT A-TTT-TT ATTTTT ATTTTT -ATTTTT ATTTTT ATTTTT
* * * * *
9822704 ATTTTT ATTATT GTTATT ATTTTT -TTATAT ATTTTT TTCTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATT-TTT ATTTTT AT-TTTT ATTTTT
*
9822753 A-TCTT ATGTATTT ATTATTT ATTT
1 ATTTTT AT-T-TTT ATT-TTT ATTT
9822777 ATTTATTACT
Statistics
Matches: 87, Mismatches: 16, Indels: 24
0.69 0.13 0.19
Matches are distributed among these distances:
5 17 0.20
6 39 0.45
7 25 0.29
8 6 0.07
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.74
Consensus pattern (6 bp):
ATTTTT
Found at i:9822741 original size:15 final size:14
Alignment explanation
Indices: 9822717--9822765 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
9822707 TTTATTATTG
9822717 TTATTATTTTTTT-
1 TTATTATTTTTTTC
*
9822730 ATA-TATTTTTTTC
1 TTATTATTTTTTTC
*
9822743 TT-TTATTTTTATC
1 TTATTATTTTTTTC
9822756 TTATGTATTT
1 TTAT-TATTT
9822766 ATTATTTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
12 9 0.31
13 14 0.48
14 1 0.03
15 5 0.17
ACGTcount: A:0.18, C:0.04, G:0.02, T:0.76
Consensus pattern (14 bp):
TTATTATTTTTTTC
Found at i:9822774 original size:15 final size:16
Alignment explanation
Indices: 9822746--9822784 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
9822736 TTTTTTCTTT
9822746 TATTT-TTATCTTATG
1 TATTTATTATCTTATG
*
9822761 TATTTATTAT-TTATT
1 TATTTATTATCTTATG
9822776 TATTTATTA
1 TATTTATTA
9822785 CTACTATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 18 0.82
16 4 0.18
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.69
Consensus pattern (16 bp):
TATTTATTATCTTATG
Found at i:9823450 original size:14 final size:14
Alignment explanation
Indices: 9823429--9823463 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
9823419 CGGATATTCT
9823429 AGAGAGAAA-AAAG
1 AGAGAGAAAGAAAG
9823442 AGAAGAGAAAGAAAG
1 AG-AGAGAAAGAAAG
9823457 AGAGAGA
1 AGAGAGA
9823464 TGGAATATGC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 2 0.10
14 12 0.60
15 6 0.30
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (14 bp):
AGAGAGAAAGAAAG
Found at i:9823774 original size:6 final size:6
Alignment explanation
Indices: 9823763--9823859 Score: 64
Period size: 6 Copynumber: 16.5 Consensus size: 6
9823753 TTTAATAGTC
* *
9823763 TTTTAT TTTTAT CTTTA- TTTTAT TTTTAT TTTT-G TTTTACT TTTT-T
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTA-T TTTTAT
* *
9823809 TTATT-T TTTTATT TTTTAT TTTCA- CTTTAT TTTGT-T TTATTA- TTTTAT
1 TT-TTAT TTTTA-T TTTTAT TTTTAT TTTTAT TTT-TAT TT-TTAT TTTTAT
9823857 TTT
1 TTT
9823860 CTTTAAATAA
Statistics
Matches: 72, Mismatches: 8, Indels: 22
0.71 0.08 0.22
Matches are distributed among these distances:
5 19 0.26
6 41 0.57
7 12 0.17
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:9823783 original size:17 final size:16
Alignment explanation
Indices: 9823763--9823859 Score: 77
Period size: 18 Copynumber: 5.6 Consensus size: 16
9823753 TTTAATAGTC
9823763 TTTTATTTTTATCTTTA
1 TTTTATTTTTAT-TTTA
*
9823780 TTTTATTTTTATTTTTG
1 TTTTATTTTTA-TTTTA
* *
9823797 TTTTACTTTTTTTTATTT
1 TTTTA-TTTTTATT-TTA
9823815 TTTTATTTTTTATTTTCA
1 TTTTA-TTTTTATTTT-A
* *
9823833 CTTTATTTTGTTTTATTA
1 TTTTATTTT-TATT-TTA
9823851 TTTTATTTT
1 TTTTATTTT
9823860 CTTTAAATAA
Statistics
Matches: 65, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
17 27 0.42
18 36 0.55
19 2 0.03
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.79
Consensus pattern (16 bp):
TTTTATTTTTATTTTA
Found at i:9823800 original size:11 final size:10
Alignment explanation
Indices: 9823763--9823818 Score: 67
Period size: 11 Copynumber: 5.2 Consensus size: 10
9823753 TTTAATAGTC
9823763 TTTTATTTTT
1 TTTTATTTTT
9823773 ATCTTTATTTTAT
1 -T-TTTATTTT-T
9823786 TTTTATTTTT
1 TTTTATTTTT
*
9823796 GTTTTACTTTT
1 -TTTTATTTTT
9823807 TTTTATTTTT
1 TTTTATTTTT
9823817 TT
1 TT
9823819 ATTTTTTATT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
10 12 0.30
11 18 0.45
12 9 0.22
13 1 0.03
ACGTcount: A:0.12, C:0.04, G:0.02, T:0.82
Consensus pattern (10 bp):
TTTTATTTTT
Found at i:9823825 original size:36 final size:36
Alignment explanation
Indices: 9823777--9823859 Score: 107
Period size: 36 Copynumber: 2.3 Consensus size: 36
9823767 ATTTTTATCT
***
9823777 TTATTTTA-TTTTTATTTTTGTTTTACTTTT-TTTTA
1 TTATTTTATTTTTTATTTTCACTTTA-TTTTGTTTTA
*
9823812 TTTTTTTATTTTTTATTTTCACTTTATTTTGTTTTA
1 TTATTTTATTTTTTATTTTCACTTTATTTTGTTTTA
9823848 TTATTTTATTTT
1 TTATTTTATTTT
9823860 CTTTAAATAA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
35 11 0.27
36 30 0.73
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.80
Consensus pattern (36 bp):
TTATTTTATTTTTTATTTTCACTTTATTTTGTTTTA
Found at i:9823860 original size:29 final size:27
Alignment explanation
Indices: 9823763--9823860 Score: 81
Period size: 29 Copynumber: 3.4 Consensus size: 27
9823753 TTTAATAGTC
* *
9823763 TTTTATTTTTATCTTTATTTTATTTTTA
1 TTTTATTTTCA-CTTTATTTTTTTTTTA
* *
9823791 TTTT-TGTTTTACTTTTTTTTATTTTTTTA
1 TTTTAT-TTTCAC-TTTATTT-TTTTTTTA
9823820 TTTTTTATTTTCACTTTATTTTGTTTTATTA
1 --TTTTATTTTCACTTTATTTT-TTTT-TTA
9823851 TTTTATTTTC
1 TTTTATTTTC
9823861 TTTAAATAAA
Statistics
Matches: 58, Mismatches: 4, Indels: 15
0.75 0.05 0.19
Matches are distributed among these distances:
27 2 0.03
28 15 0.26
29 18 0.31
30 10 0.17
31 12 0.21
32 1 0.02
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (27 bp):
TTTTATTTTCACTTTATTTTTTTTTTA
Found at i:9826418 original size:9 final size:9
Alignment explanation
Indices: 9826404--9826467 Score: 51
Period size: 9 Copynumber: 6.9 Consensus size: 9
9826394 CTAATGGATG
*
9826404 AAAAAATAT
1 AAAAAAAAT
9826413 AAAAAATAA-
1 AAAAAA-AAT
*
9826422 AAAAGAGAAAG
1 AAAA-A-AAAT
9826433 AAAAAAAAT
1 AAAAAAAAT
9826442 AAAAAAAA-
1 AAAAAAAAT
*
9826450 ATAAAAAAT
1 AAAAAAAAT
9826459 GAAAAAAAA
1 -AAAAAAAA
9826468 ATGAAAGAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
8 7 0.16
9 21 0.47
10 12 0.27
11 5 0.11
ACGTcount: A:0.84, C:0.00, G:0.06, T:0.09
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:9826478 original size:19 final size:19
Alignment explanation
Indices: 9826435--9826493 Score: 86
Period size: 19 Copynumber: 3.2 Consensus size: 19
9826425 AGAGAAAGAA
9826435 AAAAAAT-AAAAAAAAAT-
1 AAAAAATGAAAAAAAAATG
9826452 AAAAAATGAAAAAAAAATG
1 AAAAAATGAAAAAAAAATG
* *
9826471 AAAGAATGGAAAAAAAATG
1 AAAAAATGAAAAAAAAATG
9826490 AAAA
1 AAAA
9826494 TGAGAGAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
17 7 0.19
18 10 0.27
19 20 0.54
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (19 bp):
AAAAAATGAAAAAAAAATG
Found at i:9826503 original size:19 final size:18
Alignment explanation
Indices: 9826413--9826504 Score: 70
Period size: 18 Copynumber: 5.2 Consensus size: 18
9826403 GAAAAAATAT
* *
9826413 AAAAAATAAAAAAGAGAA
1 AAAAAATGAAAATGAGAA
*
9826431 AGAAAA--AAAAT-A-AA
1 AAAAAATGAAAATGAGAA
*
9826445 AAAAAATAAAAAATGA-AA
1 AAAAAAT-GAAAATGAGAA
9826463 AAAAAATGAAAGAATG-GAA
1 AAAAAATG-AA-AATGAGAA
9826482 AAAAAATGAAAATGAGAGA
1 AAAAAATGAAAATGAGA-A
9826501 AAAA
1 AAAA
9826505 TAAGACTCAA
Statistics
Matches: 61, Mismatches: 4, Indels: 17
0.74 0.05 0.21
Matches are distributed among these distances:
14 7 0.11
15 1 0.02
16 4 0.07
17 9 0.15
18 21 0.34
19 19 0.31
ACGTcount: A:0.78, C:0.00, G:0.13, T:0.09
Consensus pattern (18 bp):
AAAAAATGAAAATGAGAA
Found at i:9827110 original size:31 final size:29
Alignment explanation
Indices: 9827057--9827118 Score: 72
Period size: 31 Copynumber: 2.1 Consensus size: 29
9827047 GATGATGAAT
* *
9827057 ATGGTGATGAATTGATTGACATAACCTGTGA
1 ATGGTGATCAAGTGATTGACATAA--TGTGA
9827088 ATGGTGATCAAGTGA-TGAACATAATGTGA
1 ATGGTGATCAAGTGATTG-ACATAATGTGA
9827117 AT
1 AT
9827119 CAAATGACAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 7 0.25
30 2 0.07
31 19 0.68
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (29 bp):
ATGGTGATCAAGTGATTGACATAATGTGA
Found at i:9827247 original size:79 final size:79
Alignment explanation
Indices: 9827085--9827247 Score: 191
Period size: 79 Copynumber: 2.1 Consensus size: 79
9827075 ACATAACCTG
* * * * * *
9827085 TGAATGGTGATCAAGTGATGAACATAATGTGAATCAAATGACAGAATTCATTTTGAAATGGTTAA
1 TGAATAGTGATCAAGTGATGAACATAATATGAATCAAATGACAGAATTCATTCTAAAATAGCTAA
* * * *
9827150 TGTTGAGAAGCTTG
66 TATTGAAAAGCCTA
* * * * *
9827164 TGAATAGTGATCAAGTGATGAACATAATATGGATCAATTGATAGAATTTATTCTAAAATAGCTAG
1 TGAATAGTGATCAAGTGATGAACATAATATGAATCAAATGACAGAATTCATTCTAAAATAGCTAA
9827229 TATTGAAAAGCCTA
66 TATTGAAAAGCCTA
9827243 TGAAT
1 TGAAT
9827248 TGTGGTGACA
Statistics
Matches: 69, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
79 69 1.00
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (79 bp):
TGAATAGTGATCAAGTGATGAACATAATATGAATCAAATGACAGAATTCATTCTAAAATAGCTAA
TATTGAAAAGCCTA
Found at i:9827714 original size:21 final size:21
Alignment explanation
Indices: 9827659--9827717 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
9827649 ATGAAGTTTT
* * *
9827659 AAATGAGAATCTTCGAGTCTC
1 AAATGAAAATCTTTGAGTATC
9827680 AAATGAAAATCTTTGAGTATC
1 AAATGAAAATCTTTGAGTATC
9827701 AAATGAAAATCTTTGAG
1 AAATGAAAATCTTTGAG
9827718 ATGTAAAACT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.31
Consensus pattern (21 bp):
AAATGAAAATCTTTGAGTATC
Found at i:9828273 original size:41 final size:41
Alignment explanation
Indices: 9828161--9828274 Score: 128
Period size: 37 Copynumber: 2.9 Consensus size: 41
9828151 AGATGAGTCT
* * * * *
9828161 TTTTATTTTTTCAAAGTTGTTGTGTCTCTGTTTAGAGGAGGC
1 TTTTA-TTTTTCAAAATAGTTGTGCCTCTGTTTAGAGAAGCC
* *
9828203 TTCTATTTTTC--AA-A-TTGTGCCTCTATTTAGAGAAGCC
1 TTTTATTTTTCAAAATAGTTGTGCCTCTGTTTAGAGAAGCC
9828240 TTTTATTTTTCAAAATAGTTGTGCCTCTGTTTAGA
1 TTTTATTTTTCAAAATAGTTGTGCCTCTGTTTAGA
9828275 ATAGCTTTAT
Statistics
Matches: 59, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
37 29 0.49
39 3 0.05
40 1 0.02
41 22 0.37
42 4 0.07
ACGTcount: A:0.21, C:0.13, G:0.18, T:0.48
Consensus pattern (41 bp):
TTTTATTTTTCAAAATAGTTGTGCCTCTGTTTAGAGAAGCC
Found at i:9828936 original size:17 final size:17
Alignment explanation
Indices: 9828914--9828947 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
9828904 TTTTATTTTT
9828914 AAAGAAAGAGGG-AGAGA
1 AAAGAAAG-GGGAAGAGA
9828931 AAAGAAAGGGGAAGAGA
1 AAAGAAAGGGGAAGAGA
9828948 GGAGGGGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (17 bp):
AAAGAAAGGGGAAGAGA
Found at i:9829899 original size:56 final size:55
Alignment explanation
Indices: 9829813--9829918 Score: 133
Period size: 56 Copynumber: 1.9 Consensus size: 55
9829803 AAAAAGAAAC
* * *
9829813 AAAGAAAAAAAATTTTCTAAATAGGCCCAAAAGGTGAAAATTTTAAAAATTTTGA
1 AAAGAAAAAAAATTTTCTAAATAGACCCAAAAGGTAAAAAATTTAAAAATTTTGA
* * *
9829868 AAAGAAAAAAAATATTTTTAAACT-GACCCAAATGGTAAAAAATTTAGAAAT
1 AAAGAAAAAAAAT-TTTCTAAA-TAGACCCAAAAGGTAAAAAATTTAAAAAT
9829919 CCAAAAAAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
55 13 0.30
56 29 0.67
57 1 0.02
ACGTcount: A:0.55, C:0.08, G:0.11, T:0.26
Consensus pattern (55 bp):
AAAGAAAAAAAATTTTCTAAATAGACCCAAAAGGTAAAAAATTTAAAAATTTTGA
Found at i:9836002 original size:2 final size:2
Alignment explanation
Indices: 9835995--9836026 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
9835985 TAGCTCTAAT
9835995 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9836027 AACAACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9836860 original size:21 final size:21
Alignment explanation
Indices: 9836834--9836881 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
9836824 AATCTAGAAG
9836834 ATAGATATATATAAATCATAA
1 ATAGATATATATAAATCATAA
9836855 ATAGATATATATAAATCATAA
1 ATAGATATATATAAATCATAA
9836876 ATAGAT
1 ATAGAT
9836882 GTAAATGTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.33
Consensus pattern (21 bp):
ATAGATATATATAAATCATAA
Found at i:9843135 original size:65 final size:66
Alignment explanation
Indices: 9843044--9843170 Score: 184
Period size: 65 Copynumber: 1.9 Consensus size: 66
9843034 AACAAGTATA
* * * * *
9843044 GCAAGGCAGGTGAATCCCCTGAAGAAGAAGACGGAGAGGAT-AACCTTGTGATACAAACAGGTGT
1 GCAAGGCAGCTGAATCCCCTAAAGAAGAAGACGGAAAGAATAAACCTTGTAATACAAACAGGTGT
9843108 G
66 G
* *
9843109 GCAAGGCAGCTGAATCCCTTAAAGAAGAAGATGGAAAGAATAAACCTTGTAATACAAACAGG
1 GCAAGGCAGCTGAATCCCCTAAAGAAGAAGACGGAAAGAATAAACCTTGTAATACAAACAGG
9843171 AGGCGGCAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
65 35 0.65
66 19 0.35
ACGTcount: A:0.40, C:0.17, G:0.28, T:0.16
Consensus pattern (66 bp):
GCAAGGCAGCTGAATCCCCTAAAGAAGAAGACGGAAAGAATAAACCTTGTAATACAAACAGGTGT
G
Found at i:9843856 original size:308 final size:306
Alignment explanation
Indices: 9843280--9844196 Score: 1251
Period size: 308 Copynumber: 3.0 Consensus size: 306
9843270 TGCTTCAGGC
* * ** * *
9843280 CCTTCTAATATTAAACCAGTCCAAGCCAAGGAGGGGGTGGACAACAAAAGGTTTTTGTATA-TCT
1 CCTTCTAATATTAAACCAGTCCAAGAC-ACGAGGGGGTCCACAACAAAAGGTTTTT-TCTACACT
* * * *
9843344 TT-TATTGCTTTCTGCAAAT-TATTGTTCCAATAACAGTTGGAAA-TTT--A--TTTA---AAAA
64 TTCTATTGCTTTGTGCAAATAT-TTTTTCCAATAACAG-TGTAAACTTTGGATTTTTATTTGAAA
9843399 CTTCACAA-TGACAAAGGAAATTTATGGTTTCTTTTATGTTTTTCTAGCAGGGTATGTTTAAGAA
127 CTTCACAACT-ACAAAGGAAATTTATGGTTTCTTTTATGTTTTTCTAGCAGGGTATGTTTAAGAA
** ** *
9843463 GGCAATCTAATAGGTTTAAAGCCCAAGAACCAGAAACGTCTGGAGATGTGTTTGAGGTAGATGAT
191 GGCAATCTGCTAGGTTTAAAGCCCAAGAACCAGAAACAACTGAAGATGTGTTTGAGGTAGATGAT
9843528 ACAAAATTGCTTGTTTCTTCTTCCTGTGATGATAAGGTGCATGAGAGTGGT
256 ACAAAATTGCTTGTTTCTTCTTCCTGTGATGATAAGGTGCATGAGAGTGGT
9843579 CCTTCTAATATTAAACCAGTCCAAG-C-CGAGGGGGTCCACAACAAAAGGTTTTTTCTACACTTT
1 CCTTCTAATATTAAACCAGTCCAAGACACGAGGGGGTCCACAACAAAAGGTTTTTTCTACACTTT
*
9843642 -TATTGCTTTGTGCTAATATATTTTTTTTCCATTAACAGTGTAAACTTTAGG-TTTTTATTTGAA
66 CTATTGCTTTGTGC-AA-ATA--TTTTTTCCAATAACAGTGTAAACTTT-GGATTTTTATTTGAA
* *
9843705 AGCTTCACAACTACAAGGGAAATTTATGGTTTCTTTTATGTTTTTCTAGCAGGGTATCTTTAAGA
126 A-CTTCACAACTACAAAGGAAATTTATGGTTTCTTTTATGTTTTTCTAGCAGGGTATGTTTAAGA
*
9843770 AGGCAATCTGCTAGGTTTAAAGGCCAAGAACCAGAAACAACTGAAGATGTGTTTGAGGTAGATGA
190 AGGCAATCTGCTAGGTTTAAAGCCCAAGAACCAGAAACAACTGAAGATGTGTTTGAGGTAGATGA
*
9843835 TACAAAATTGCTTGTTTCTTCTTCCTGTGATGATAAGGTGCATGAGAGTGGC
255 TACAAAATTGCTTGTTTCTTCTTCCTGTGATGATAAGGTGCATGAGAGTGGT
* * * * *
9843887 CCTTCTAATATTAAACCAGTCCAAGACAAGGAGGGGTTCCACAACAAAAGGTTTTTTGTGCATTT
1 CCTTCTAATATTAAACCAGTCCAAGAC-ACGAGGGGGTCCACAACAAAAGGTTTTTTCTACACTT
* *
9843952 TCTATTGCTTTGTGCAAATATTTTTTCCAATAACAGTGTAATCTTTGGATTTTTTATTTGAAACC
65 TCTATTGCTTTGTGCAAATATTTTTTCCAATAACAGTGTAAACTTTGGA-TTTTTATTTGAAACT
* * ** * *
9844017 TCACAACGA-AAAGGAAATTTGTGGTTTCTTTTATGTTTTTCTAGCAGGAAAAGGTCTAAGAAGG
129 TCACAACTACAAAGGAAATTTATGGTTTCTTTTATGTTTTTCTAGCAGG-GTATGTTTAAGAAGG
*
9844081 CAATCTGCTAGGTTTAAAGCCCAAGAACCAGAATCAACTGAAGATGTGTTTGAGGTAGATGATA-
193 CAATCTGCTAGGTTTAAAGCCCAAGAACCAGAAACAACTGAAGATGTGTTTGAGGTAGATGATAC
9844145 AAGAA-TGTCTTGTTTCTTCTTCCTGTGATGATAAGGTGCATGAGAGTGGT
258 AA-AATTG-CTTGTTTCTTCTTCCTGTGATGATAAGGTGCATGAGAGTGGT
9844195 CC
1 CC
9844197 AATATCTTCT
Statistics
Matches: 554, Mismatches: 38, Indels: 43
0.87 0.06 0.07
Matches are distributed among these distances:
295 3 0.01
296 40 0.07
297 2 0.00
298 3 0.01
299 30 0.05
300 16 0.03
301 1 0.00
304 4 0.01
307 46 0.08
308 344 0.62
309 15 0.03
310 3 0.01
311 34 0.06
312 13 0.02
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.35
Consensus pattern (306 bp):
CCTTCTAATATTAAACCAGTCCAAGACACGAGGGGGTCCACAACAAAAGGTTTTTTCTACACTTT
CTATTGCTTTGTGCAAATATTTTTTCCAATAACAGTGTAAACTTTGGATTTTTATTTGAAACTTC
ACAACTACAAAGGAAATTTATGGTTTCTTTTATGTTTTTCTAGCAGGGTATGTTTAAGAAGGCAA
TCTGCTAGGTTTAAAGCCCAAGAACCAGAAACAACTGAAGATGTGTTTGAGGTAGATGATACAAA
ATTGCTTGTTTCTTCTTCCTGTGATGATAAGGTGCATGAGAGTGGT
Found at i:9844496 original size:312 final size:312
Alignment explanation
Indices: 9844134--9844739 Score: 1185
Period size: 312 Copynumber: 1.9 Consensus size: 312
9844124 ATGTGTTTGA
*
9844134 GGTAGATGATAAAGAATGTCTTGTTTCTTCTTCCTGTGATGATAAGGTGCATGAGAGTGGTCCAA
1 GGTAGATGATAAAGAATGTCTTGTTTCTTCTTCCTGTGATGATAAGGTGCATGAAAGTGGTCCAA
9844199 TATCTTCTGGTTCATCAGTCAAAAGTGAACACGTAGAAGGAAGTATGATCCCTAGAAATGAAGCT
66 TATCTTCTGGTTCATCAGTCAAAAGTGAACACGTAGAAGGAAGTATGATCCCTAGAAATGAAGCT
*
9844264 CAAGAACTTAGAAGGATATCTGTGGGAAGGCCTTTGCGCAGAGCAGCTGAGAAGGTCCAATCCTA
131 CAAGAACTTAGAAGGATATCTGTGGGAAGGCCTTTGCGCAGAGCAGCTGAGAAGGTCCAATCATA
*
9844329 CAAGGAAATTCCACTTAATGTGAAGATGCGAAGAGAAGAGTGAGTTCATTATCTTTGCTTCTACC
196 CAAGGAAATTCCACTTAATGTGAAGATGCGAAGAGAAGAGTGAATTCATTATCTTTGCTTCTACC
9844394 CTGCATTTTTCTAAGGGTATATTTTGCAGAAGGTCTTGTTTCTTCTTTGCAG
261 CTGCATTTTTCTAAGGGTATATTTTGCAGAAGGTCTTGTTTCTTCTTTGCAG
9844446 GGTAGATGATAAAGAATGTCTTGTTTCTTCTTCCTGTGATGATAAGGTGCATGAAAGTGGTCCAA
1 GGTAGATGATAAAGAATGTCTTGTTTCTTCTTCCTGTGATGATAAGGTGCATGAAAGTGGTCCAA
9844511 TATCTTCTGGTTCATCAGTCAAAAGTGAACACGTAGAAGGAAGTATGATCCCTAGAAATGAAGCT
66 TATCTTCTGGTTCATCAGTCAAAAGTGAACACGTAGAAGGAAGTATGATCCCTAGAAATGAAGCT
9844576 CAAGAACTTAGAAGGATATCTGTGGGAAGGCCTTTGCGCAGAGCAGCTGAGAAGGTCCAATCATA
131 CAAGAACTTAGAAGGATATCTGTGGGAAGGCCTTTGCGCAGAGCAGCTGAGAAGGTCCAATCATA
9844641 CAAGGAAATTCCACTTAATGTGAAGATGCGAAGAGAAGAGTGAATTCATTATCTTTGCTTCTACC
196 CAAGGAAATTCCACTTAATGTGAAGATGCGAAGAGAAGAGTGAATTCATTATCTTTGCTTCTACC
9844706 CTGCATTTTTCTAAGGGTATATTTTGCAGAAGGT
261 CTGCATTTTTCTAAGGGTATATTTTGCAGAAGGT
9844740 TGAGAATTGA
Statistics
Matches: 291, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
312 291 1.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (312 bp):
GGTAGATGATAAAGAATGTCTTGTTTCTTCTTCCTGTGATGATAAGGTGCATGAAAGTGGTCCAA
TATCTTCTGGTTCATCAGTCAAAAGTGAACACGTAGAAGGAAGTATGATCCCTAGAAATGAAGCT
CAAGAACTTAGAAGGATATCTGTGGGAAGGCCTTTGCGCAGAGCAGCTGAGAAGGTCCAATCATA
CAAGGAAATTCCACTTAATGTGAAGATGCGAAGAGAAGAGTGAATTCATTATCTTTGCTTCTACC
CTGCATTTTTCTAAGGGTATATTTTGCAGAAGGTCTTGTTTCTTCTTTGCAG
Found at i:9846401 original size:23 final size:24
Alignment explanation
Indices: 9846361--9846407 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
9846351 CGATATTCAA
9846361 ATTTTAATATTTATAATTATTTAT
1 ATTTTAATATTTATAATTATTTAT
* *
9846385 ATTTTTATA-TTATAATTTTTTAT
1 ATTTTAATATTTATAATTATTTAT
9846408 TCAAAATTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (24 bp):
ATTTTAATATTTATAATTATTTAT
Found at i:9849611 original size:34 final size:35
Alignment explanation
Indices: 9849568--9849633 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
9849558 GTGTTATCTT
9849568 AAAATAGAAATGAGAAA-TGGATAT-TTTTTTAAA
1 AAAATAGAAATGAGAAATTGGATATGTTTTTTAAA
*
9849601 AAAATTAGAAATGAGAAATTGGTTATGTTTTTT
1 AAAA-TAGAAATGAGAAATTGGATATGTTTTTT
9849634 TAAATTGATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 4 0.14
34 13 0.45
35 6 0.21
36 6 0.21
ACGTcount: A:0.45, C:0.00, G:0.17, T:0.38
Consensus pattern (35 bp):
AAAATAGAAATGAGAAATTGGATATGTTTTTTAAA
Found at i:9850266 original size:73 final size:73
Alignment explanation
Indices: 9850139--9850361 Score: 230
Period size: 73 Copynumber: 3.1 Consensus size: 73
9850129 TTTACCTTTT
* * ** *
9850139 ATTTAATTTTT-AAAATTCAACAAAAACGATATTTTTAAGATAAAATAAG-G-TATTTGTTAAAA
1 ATTTATTTTTTAAAAATTCAATAAAAATAATATTTTTAAGATAAAA-AAGTGATATTTGTTGAAA
9850201 ATATGAAAAAA
65 ATAT--AAAAA
* *
9850212 ATTTATTTTTT-AGAATT---TAAAAATAAAATTTTTTAAGATAAAAAACGTGATATTTGTTGAA
1 ATTTATTTTTTAAAAATTCAATAAAAATAATA-TTTTTAAGATAAAAAA-GTGATATTTGTTGAA
9850273 AATAT-AAAA
64 AATATAAAAA
* * *
9850282 ATATATTTTTTAAAAATTCAATAAAAATTATATTTTTAAGATAAAAAAGCT-ATTTTTGTTGAAA
1 ATTTATTTTTTAAAAATTCAATAAAAATAATATTTTTAAGATAAAAAAG-TGATATTTGTTGAAA
9850346 ATATACAAAA
65 ATATA-AAAA
9850356 ATTTAT
1 ATTTAT
9850362 ATTATGATAA
Statistics
Matches: 126, Mismatches: 13, Indels: 21
0.79 0.08 0.13
Matches are distributed among these distances:
70 23 0.18
71 20 0.16
72 18 0.14
73 47 0.37
74 18 0.14
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (73 bp):
ATTTATTTTTTAAAAATTCAATAAAAATAATATTTTTAAGATAAAAAAGTGATATTTGTTGAAAA
TATAAAAA
Found at i:9850329 original size:47 final size:45
Alignment explanation
Indices: 9850145--9850338 Score: 117
Period size: 47 Copynumber: 4.1 Consensus size: 45
9850135 TTTTATTTAA
* *
9850145 TTTTTAAAATTCAACAAAAACGATATTTTTAAGATAAAATAAGGTAT
1 TTTTTAAAATTCAA-AAAAATGATATTTTTAAGATAAAA-AAGATAT
* * * * *
9850192 TTGTTAAAAATATGAAAAAAAT-TTATTTTTTAGAATTTAAAAATA-AAAT
1 TT-TTTAAAAT-TCAAAAAAATGATATTTTTAAG-A--TAAAAA-AGATAT
* * * *
9850241 TTTTTAAGA-T-AAAAAACGTGATATTTGTTGAAAATATAAAAATATAT
1 TTTTTAAAATTCAAAAAA-ATGATATTT-TT-AAGATA-AAAAAGATAT
* *
9850288 TTTTTAAAAATTCAATAAAAATTATATTTTTAAGATAAAAAAGCTAT
1 TTTTT-AAAATTCAA-AAAAATGATATTTTTAAGATAAAAAAGATAT
9850335 TTTT
1 TTTT
9850339 GTTGAAAATA
Statistics
Matches: 111, Mismatches: 20, Indels: 32
0.68 0.12 0.20
Matches are distributed among these distances:
45 6 0.05
46 5 0.05
47 40 0.36
48 29 0.26
49 12 0.11
50 15 0.14
51 4 0.04
ACGTcount: A:0.49, C:0.03, G:0.07, T:0.40
Consensus pattern (45 bp):
TTTTTAAAATTCAAAAAAATGATATTTTTAAGATAAAAAAGATAT
Found at i:9850401 original size:19 final size:20
Alignment explanation
Indices: 9850368--9850409 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
9850358 TTATATTATG
*
9850368 ATAAAATTTTGTTATTACAT
1 ATAAAATTTTATTATTACAT
*
9850388 ATAAAA-TTTATTATTATAT
1 ATAAAATTTTATTATTACAT
9850407 ATA
1 ATA
9850410 TTATATGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (20 bp):
ATAAAATTTTATTATTACAT
Found at i:9850464 original size:16 final size:16
Alignment explanation
Indices: 9850443--9850476 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9850433 ATACTTTTCC
*
9850443 TTAAATAATTTACATA
1 TTAAATAAATTACATA
*
9850459 TTAAATAAATTACTTA
1 TTAAATAAATTACATA
9850475 TT
1 TT
9850477 TATTCACGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (16 bp):
TTAAATAAATTACATA
Found at i:9851147 original size:20 final size:21
Alignment explanation
Indices: 9851122--9851164 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
9851112 TAATATTTTT
9851122 TAATA-TTTATATTTAAAAAA
1 TAATATTTTATATTTAAAAAA
9851142 TAATATTTTATATTTAAAAAA
1 TAATATTTTATATTTAAAAAA
9851163 TA
1 TA
9851165 TTTTATTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TAATATTTTATATTTAAAAAA
Found at i:9851166 original size:18 final size:20
Alignment explanation
Indices: 9851122--9851170 Score: 68
Period size: 18 Copynumber: 2.5 Consensus size: 20
9851112 TAATATTTTT
9851122 TAATA-TTTATATTTAAAAAA
1 TAATATTTTATATTT-AAAAA
9851142 TAATATTTTATATTT-AAAA
1 TAATATTTTATATTTAAAAA
9851161 -AATATTTTAT
1 TAATATTTTAT
9851171 TAATTTCGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 10 0.36
19 4 0.14
20 5 0.18
21 9 0.32
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TAATATTTTATATTTAAAAA
Found at i:9852660 original size:20 final size:20
Alignment explanation
Indices: 9852635--9852672 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
9852625 GCATTTTTTT
*
9852635 AGTCTAATTATAAAAAAAAA
1 AGTCTAATAATAAAAAAAAA
9852655 AGTCTAATAATAAAAAAA
1 AGTCTAATAATAAAAAAA
9852673 TTCATTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24
Consensus pattern (20 bp):
AGTCTAATAATAAAAAAAAA
Found at i:9856678 original size:14 final size:15
Alignment explanation
Indices: 9856659--9856723 Score: 55
Period size: 13 Copynumber: 4.3 Consensus size: 15
9856649 ATATGATAAA
9856659 AATATATAAATT-TT
1 AATATATAAATTATT
9856673 AATATAT-AATT-TT
1 AATATATAAATTATT
* *
9856686 TATATAAAAAATTATAT
1 AATAT-ATAAATTAT-T
*
9856703 AAATATATGAATTATT
1 -AATATATAAATTATT
9856719 AATAT
1 AATAT
9856724 TTTATATAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
13 10 0.24
14 8 0.20
15 9 0.22
16 2 0.05
17 8 0.20
18 4 0.10
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
AATATATAAATTATT
Found at i:9856687 original size:45 final size:46
Alignment explanation
Indices: 9856631--9856723 Score: 134
Period size: 45 Copynumber: 2.0 Consensus size: 46
9856621 ACAAATTATG
* *
9856631 ATATTATTTTTATATAAAATATGATAAAAATATATAAATT-TTAAT
1 ATATAATTTTTATATAAAAAATGATAAAAATATATAAATTATTAAT
* * *
9856676 ATATAATTTTTATATAAAAAATTATATAAATATATGAATTATTAAT
1 ATATAATTTTTATATAAAAAATGATAAAAATATATAAATTATTAAT
9856722 AT
1 AT
9856724 TTTATATAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
45 35 0.83
46 7 0.17
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (46 bp):
ATATAATTTTTATATAAAAAATGATAAAAATATATAAATTATTAAT
Found at i:9858223 original size:19 final size:19
Alignment explanation
Indices: 9858201--9858237 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
9858191 TATTTAGTAT
*
9858201 TATTTAAATCCATTTAAAA
1 TATTCAAATCCATTTAAAA
*
9858220 TATTCAAATTCATTTAAA
1 TATTCAAATCCATTTAAA
9858238 TTGATAAGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (19 bp):
TATTCAAATCCATTTAAAA
Found at i:9859500 original size:2 final size:2
Alignment explanation
Indices: 9859495--9859530 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
9859485 AATTAAAAAA
9859495 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9859531 TTTGCCTATC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9869685 original size:358 final size:357
Alignment explanation
Indices: 9869005--9870190 Score: 1502
Period size: 358 Copynumber: 3.3 Consensus size: 357
9868995 ATCGCTACAT
* * * * *
9869005 AAATTTTAATACGGTTATTGAAGGCT-TATATCCAAGAAAGACGCCTTTAATAATTTCTATCACA
1 AAATTTTAACACGATTATTGAAAGATGTATATCCAAGAAAGACACCTTTAATAATTTCTATCACA
* *
9869069 GTTTGTAGATAATTAGTGAAGGCGGTTGTAGATAACAACGCCTTCAATAA----TTTAAAAATTT
66 GTTTGTAGATAATTAGTGAAGGCGATTGCAGATAACAACGCCTTCAATAATTTTTTTAAAAATTT
* * * *
9869130 TTTTTTCATATTATTAAAGCCGTCTTTTATTAT-AAAATGCCTTGAATATACCACGATGGTTATG
131 TTTTTT-AGATTATTAAAGGCATCTTTTATTATGAAAA--CCTTTAATATACCACGATGGTTATG
* * *
9869194 GAAGGCGTTTA-TTCAAAAAAACACATTCAATATACCTTTAAACTTAGTAATCTATTACTGAAGG
193 GAAGGCGTTTATTTGAAAAAAACACCTTCAATATACCTTTAAACTTAGTAATCCATTACTGAAGG
* * *
9869258 CGTTTGTTAATAACAAACGCCTTCAAAATTTTTTCACTAAAAATTTTAGGAATTATTAAAGGTGT
258 AGTTTGTTAATAACAAACACCTTCAAAAATTTTTCACTAAAAATTTTA-GAATTATTAAAGGTGT
* *
9869323 CTTCTACTGTAAAATACCTTCTATATACCACCAAAC
322 CTTCTACTGTAAAATACCTTCTATATACCGCCACAC
* *
9869359 AAATTTTAACATGATTATTGAAAG-TGTATATCCAAGAAAGACGCCTTTAATAATTTCTATCACA
1 AAATTTTAACACGATTATTGAAAGATGTATATCCAAGAAAGACACCTTTAATAATTTCTATCACA
* *
9869423 GTTTGTAAATAATTAGTGAAGGCGATTGCAGATAACAATGCCTTCAATAATTTTTTTAAAAAGTT
66 GTTTGTAGATAATTAGTGAAGGCGATTGCAGATAACAACGCCTTCAATAATTTTTTTAAAAA-TT
* *
9869488 TTTTTTT-GATTATTAAAGGCATCTTTTATTATGAAACACCTTTAATATATCACGATGGTTATAG
130 TTTTTTTAGATTATTAAAGGCATCTTTTATTATGAAA-ACCTTTAATATACCACGATGGTTATGG
* *
9869552 AAGGCGTTTATTTGAAAAAAATACCTTCAATATACCTTTAAACTTAGTAATCCATTACTGAAGGT
194 AAGGCGTTTATTTGAAAAAAACACCTTCAATATACCTTTAAACTTAGTAATCCATTACTGAAGGA
* * * ** *
9869617 GTTTGTTAGTAACAGACACCTTCAAAAATTTTTCACTAAATATTTTGAGAATCGTTAAAGGCGTC
259 GTTTGTTAATAACAAACACCTTCAAAAATTTTTCACTAAAAATTTT-AGAATTATTAAAGGTGTC
* *
9869682 TTCTACTGTAAAATACCTTCTATATACCGTCACAT
323 TTCTACTGTAAAATACCTTCTATATACCGCCACAC
* * *
9869717 AAATTTTAACACGATTATTG-AAGACGTATATACAAGAAAGACACTTTTAATAA-TTCATATCAC
1 AAATTTTAACACGATTATTGAAAGATGTATATCCAAGAAAGACACCTTTAATAATTTC-TATCAC
* * * * * * * * *
9869780 AGTTTGTAGATAATTAGTAAAGGTGGTTACAAATAAAAATGCCTTTAATAATTTTCTT-AAAATT
65 AGTTTGTAGATAATTAGTGAAGGCGATTGCAGATAACAACGCCTTCAATAATTTTTTTAAAAATT
* ** *
9869844 TTTTTTTCAGATTATTAAAGGCTTCTTTTATTATGAAATGCTTTGAATATACCACAATGGTTATG
130 TTTTTTT-AGATTATTAAAGGCATCTTTTATTATGAAAACCTTT-AATATACCACGATGGTTATG
* * *
9869909 GAAGGCGTTTATTCG-AAAAAGCGCCTTCAATATACCTTTAAACTTAGTAATCCATTACTGAAGG
193 GAAGGCGTTTATTTGAAAAAAACACCTTCAATATACCTTTAAACTTAGTAATCCATTACTGAAGG
* * **
9869973 AGTTTGTTAATAACAAACACCTTTAAAACTTTCCCACTAAAAATTTTAAGAATTATTAAAGGTGT
258 AGTTTGTTAATAACAAACACCTTCAAAAATTTTTCACTAAAAATTTT-AGAATTATTAAAGGTGT
* ** * *
9870038 CTTCTATTGTAAAATATTTTTTATATACCGCTACAC
322 CTTCTACTGTAAAATACCTTCTATATACCGCCACAC
* * * * * *
9870074 AAATTTTAACATGGTTATTGAACG-GGTATATCCAAGAAAGCCACCTTTAATAATTCCTATCACA
1 AAATTTTAACACGATTATTGAAAGATGTATATCCAAGAAAGACACCTTTAATAATTTCTATCACA
* * * *
9870138 ATTTATAGATAATTAGTGAAGG-TAGTTGCAGATAACAACGCCTTTAATAATTT
66 GTTTGTAGATAATTAGTGAAGGCGA-TTGCAGATAACAACGCCTTCAATAATTT
9870191 GTTATAAACT
Statistics
Matches: 723, Mismatches: 91, Indels: 33
0.85 0.11 0.04
Matches are distributed among these distances:
353 1 0.00
354 104 0.14
356 9 0.01
357 290 0.40
358 308 0.43
359 11 0.02
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36
Consensus pattern (357 bp):
AAATTTTAACACGATTATTGAAAGATGTATATCCAAGAAAGACACCTTTAATAATTTCTATCACA
GTTTGTAGATAATTAGTGAAGGCGATTGCAGATAACAACGCCTTCAATAATTTTTTTAAAAATTT
TTTTTTAGATTATTAAAGGCATCTTTTATTATGAAAACCTTTAATATACCACGATGGTTATGGAA
GGCGTTTATTTGAAAAAAACACCTTCAATATACCTTTAAACTTAGTAATCCATTACTGAAGGAGT
TTGTTAATAACAAACACCTTCAAAAATTTTTCACTAAAAATTTTAGAATTATTAAAGGTGTCTTC
TACTGTAAAATACCTTCTATATACCGCCACAC
Found at i:9870112 original size:357 final size:355
Alignment explanation
Indices: 9868997--9870190 Score: 1565
Period size: 357 Copynumber: 3.3 Consensus size: 355
9868987 TTGAACATAT
* * * * *
9868997 CGCTACATAAATTTTAATACGGTTATTGAAGGCTTATATCCAAGAAAGACGCCTTTAATAATTTC
1 CGCTACACAAATTTTAACACGATTATTGAAGG-GTATATCCAAGAAAGACACCTTTAATAATTTC
* *
9869062 TATCACAGTTTGTAGATAATTAGTGAAGGCGGTTGTAGATAACAACGCCTTCAATAA--TTTAAA
65 TATCACAGTTTGTAGATAATTAGTGAAGGCGGTTGCAGATAACAACGCCTTCAATAATTTTTTAA
* * * * *
9869125 AATTTTTTTTTCATATTATTAAAGCCGTCTTTTATTATAAAATGCCTTGAATATACCACGATGGT
130 AATTTTTTTTTCAGATTATTAAAGGCATCTTTTATTATGAAATGCTTTGAATATACCACGATGGT
* * *
9869190 TATGGAAGGCGTTTATTCAAAAAAACACATTCAATATACCTTTAAACTTAGTAATCTATTACTGA
195 TATGGAAGGCGTTTATTCGAAAAAACACCTTCAATATACCTTTAAACTTAGTAATCCATTACTGA
* * * *
9869255 AGGCGTTTGTTAATAACAAACGCCTTCAAAATTTTTTCACTAAAAATTTTAGGAATTATTAAAGG
260 AGGAGTTTGTTAATAACAAACACCTTCAAAAATTTTTCACTAAAAATTTTAAGAATTATTAAAGG
9869320 TGTCTTCTACTGTAAAATACCTTCTATATAC
325 TGTCTTCTACTGTAAAATACCTTCTATATAC
* * * * * *
9869351 CACCAAACAAATTTTAACATGATTATTGAAAGTGTATATCCAAGAAAGACGCCTTTAATAATTTC
1 CGCTACACAAATTTTAACACGATTATTG-AAGGGTATATCCAAGAAAGACACCTTTAATAATTTC
* * *
9869416 TATCACAGTTTGTAAATAATTAGTGAAGGCGATTGCAGATAACAATGCCTTCAATAATTTTTTTA
65 TATCACAGTTTGTAGATAATTAGTGAAGGCGGTTGCAGATAACAACGCCTTCAATAA-TTTTTT-
** *
9869481 AAAAGTTTTTTTTT--GATTATTAAAGGCATCTTTTATTATGAAACACCTTT-AATATATCACGA
128 AAAA-TTTTTTTTTCAGATTATTAAAGGCATCTTTTATTATGAAA-TGCTTTGAATATACCACGA
* * *
9869543 TGGTTATAGAAGGCGTTTATTTGAAAAAAATACCTTCAATATACCTTTAAACTTAGTAATCCATT
191 TGGTTATGGAAGGCGTTTATTCG-AAAAAACACCTTCAATATACCTTTAAACTTAGTAATCCATT
* * * * * **
9869608 ACTGAAGGTGTTTGTTAGTAACAGACACCTTCAAAAATTTTTCACTAAATATTTTGAGAATCGTT
255 ACTGAAGGAGTTTGTTAATAACAAACACCTTCAAAAATTTTTCACTAAAAATTTTAAGAATTATT
*
9869673 AAAGGCGTCTTCTACTGTAAAATACCTTCTATATAC
320 AAAGGTGTCTTCTACTGTAAAATACCTTCTATATAC
* * * *
9869709 CG-TCACATAAATTTTAACACGATTATTGAAGACGTATATACAAGAAAGACACTTTTAATAA-TT
1 CGCT-ACACAAATTTTAACACGATTATTGAAG-GGTATATCCAAGAAAGACACCTTTAATAATTT
* * * * * * *
9869772 CATATCACAGTTTGTAGATAATTAGTAAAGGTGGTTACAAATAAAAATGCCTTTAATAATTTTCT
64 C-TATCACAGTTTGTAGATAATTAGTGAAGGCGGTTGCAGATAACAACGCCTTCAATAATTTT-T
* *
9869837 TAAAATTTTTTTTTCAGATTATTAAAGGCTTCTTTTATTATGAAATGCTTTGAATATACCACAAT
127 TAAAATTTTTTTTTCAGATTATTAAAGGCATCTTTTATTATGAAATGCTTTGAATATACCACGAT
* *
9869902 GGTTATGGAAGGCGTTTATTCGAAAAAGCGCCTTCAATATACCTTTAAACTTAGTAATCCATTAC
192 GGTTATGGAAGGCGTTTATTCGAAAAAACACCTTCAATATACCTTTAAACTTAGTAATCCATTAC
* * **
9869967 TGAAGGAGTTTGTTAATAACAAACACCTTTAAAACTTTCCCACTAAAAATTTTAAGAATTATTAA
257 TGAAGGAGTTTGTTAATAACAAACACCTTCAAAAATTTTTCACTAAAAATTTTAAGAATTATTAA
* ** *
9870032 AGGTGTCTTCTATTGTAAAATATTTTTTATATAC
322 AGGTGTCTTCTACTGTAAAATACCTTCTATATAC
* * * *
9870066 CGCTACACAAATTTTAACATGGTTATTGAACGGGTATATCCAAGAAAGCCACCTTTAATAATTCC
1 CGCTACACAAATTTTAACACGATTATTGAA-GGGTATATCCAAGAAAGACACCTTTAATAATTTC
* * ** *
9870131 TATCACAATTTATAGATAATTAGTGAAGGTAGTTGCAGATAACAACGCCTTTAATAATTT
65 TATCACAGTTTGTAGATAATTAGTGAAGGCGGTTGCAGATAACAACGCCTTCAATAATTT
9870191 GTTATAAACT
Statistics
Matches: 724, Mismatches: 98, Indels: 33
0.85 0.11 0.04
Matches are distributed among these distances:
354 105 0.15
355 3 0.00
356 9 0.01
357 302 0.42
358 296 0.41
359 9 0.01
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.36
Consensus pattern (355 bp):
CGCTACACAAATTTTAACACGATTATTGAAGGGTATATCCAAGAAAGACACCTTTAATAATTTCT
ATCACAGTTTGTAGATAATTAGTGAAGGCGGTTGCAGATAACAACGCCTTCAATAATTTTTTAAA
ATTTTTTTTTCAGATTATTAAAGGCATCTTTTATTATGAAATGCTTTGAATATACCACGATGGTT
ATGGAAGGCGTTTATTCGAAAAAACACCTTCAATATACCTTTAAACTTAGTAATCCATTACTGAA
GGAGTTTGTTAATAACAAACACCTTCAAAAATTTTTCACTAAAAATTTTAAGAATTATTAAAGGT
GTCTTCTACTGTAAAATACCTTCTATATAC
Found at i:9870972 original size:85 final size:85
Alignment explanation
Indices: 9870823--9870978 Score: 199
Period size: 85 Copynumber: 1.8 Consensus size: 85
9870813 AATATTATGG
* * * * *
9870823 TTTGCTGAACCTTGTTGACTGATATTGTATTGCCGAATAGTATTGTATGATATTGGGGGTCTGAA
1 TTTGCTAAACCTTATTGACTGATATTGTATTGCCGAATAGTATTGAATGAAATTGAGGGTCTGAA
9870888 TCATATTTCATGCTAAATAC
66 TCATATTTCATGCTAAATAC
* * * *
9870908 TTTGCTAAACCTTATTGTCTGATATTGTTTTGCTGAAT-GGATTTGAATGAAATTAGAGGG-CTG
1 TTTGCTAAACCTTATTGACTGATATTGTATTGCCGAATAGTA-TTGAATGAAATT-GAGGGTCTG
9870971 AATCATAT
64 AATCATAT
9870979 GCTGAATGGT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
84 2 0.03
85 54 0.90
86 4 0.07
ACGTcount: A:0.27, C:0.12, G:0.21, T:0.40
Consensus pattern (85 bp):
TTTGCTAAACCTTATTGACTGATATTGTATTGCCGAATAGTATTGAATGAAATTGAGGGTCTGAA
TCATATTTCATGCTAAATAC
Found at i:9876048 original size:84 final size:83
Alignment explanation
Indices: 9875913--9876081 Score: 227
Period size: 84 Copynumber: 2.0 Consensus size: 83
9875903 TACATAATTG
* *
9875913 TTTGACGTTACACCAAGCCAACAAAAGAAACTATTTACAAGTTGCCTGTAAATACAA-ATGTCAA
1 TTTGACGTTACACAAAGCCAACAAAACAAACTATTTACAAGTTGCCTGTAAATA-AAGATGTCAA
9875977 TTATTTATTTTGAATTTAT
65 TTATTTATTTTGAATTTAT
* * *
9875996 TTTGACGTTACATCAAAGCCAATAGAACAAACTATTTATAACG-T-CCTCGTAAATAAAGATGTC
1 TTTGACGTTACA-CAAAGCCAACAAAACAAACTATTTACAA-GTTGCCT-GTAAATAAAGATGTC
*
9876059 AATTATTTATTTTGTATTTAT
63 AATTATTTATTTTGAATTTAT
9876080 TT
1 TT
9876082 GTGTTAAAAT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
83 17 0.22
84 58 0.76
85 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (83 bp):
TTTGACGTTACACAAAGCCAACAAAACAAACTATTTACAAGTTGCCTGTAAATAAAGATGTCAAT
TATTTATTTTGAATTTAT
Found at i:9876978 original size:129 final size:130
Alignment explanation
Indices: 9876624--9877321 Score: 731
Period size: 130 Copynumber: 5.4 Consensus size: 130
9876614 TATTATATCG
* *
9876624 TCATATCATAATTATGAAAATA-ATTTT-T-TTATAATTATTTACTAAATAATCCCTTATGAAAT
1 TCATATCATAATTATGAAAATACCTTTTCTCTTATAATTATTTACTAAATAATCTCTTATGAAAT
* * * * *
9876686 TATCAAAATACCCATATTC-ATTATAGGATAAAAAATTAACAAGTGACCAAA-TGCATTATTATG
66 TACCAAAATACCC-T-TTCTATTATATGATAAGAAATTAACATGTGACCAAATTG-ACTATTATG
9876749 CCA
128 CCA
* * * * * * *
9876752 TTATACCAT-ATTATGAAAATATAC-ATTCTTTTATAATTATTTATTAAATAATTTC-TATGAAA
1 TCATATCATAATTATGAAAATA-CCTTTTCTCTTATAATTATTTACTAAATAATCTCTTATGAAA
** * ** * *
9876814 TTACCAAAATTTCATTT-TCATTATATGATAAGAAATTGGCATGTGATCAAATTGACTATTATAC
65 TTACCAAAATACCCTTTCT-ATTATATGATAAGAAATTAACATGTGACCAAATTGACTATTATGC
9876878 CA
129 CA
* * * * *
9876880 TCATATCACAATTACGATAATACCTTTTCTCTTA-AATTATTTACTAAATAATCTTTTATAAAAT
1 TCATATCATAATTATGAAAATACCTTTTCTCTTATAATTATTTACTAAATAATCTCTTATGAAAT
* *
9876944 TACCAAAATACCCTTTCTATTATATGATAAGAAATTAGCATGTGATCAAA-TGAACTATTATGCC
66 TACCAAAATACCCTTTCTATTATATGATAAGAAATTAACATGTGACCAAATTG-ACTATTATGCC
9877008 A
130 A
* *** * *
9877009 TCATATAATAATTATGAAAATACCCCGTCTCTTATAATTATTTACTAAATAATCTATGATGAAAT
1 TCATATCATAATTATGAAAATACCTTTTCTCTTATAATTATTTACTAAATAATCTCTTATGAAAT
* * * * * **
9877074 TACTAAAATACCTTTTCTATTATATGATAAAAAATTGACATGTGACCAAATAGACTATTATGCTT
66 TACCAAAATACCCTTTCTATTATATGATAAGAAATTAACATGTGACCAAATTGACTATTATGCCA
* * * *
9877139 TCATATCATAATTAAGAAAATACTCATTT-TCTTCTAATTATTTACTAAATAATCTCTTA-AAAA
1 TCATATCATAATTATGAAAATAC-CTTTTCTCTTATAATTATTTACTAAATAATCTCTTATGAAA
* * * *
9877202 TTTATCAAAATACCCTTCCCATTATATGATAAGAAATTAACATGTGACCAAATGGACTATTATGC
65 -TTACCAAAATACCCTTTCTATTATATGATAAGAAATTAACATGTGACCAAATTGACTATTATGC
*
9877267 CT
129 CA
* ** *
9877269 TCATGTCATAATTACAAAAATATCC-TTTATCTTATAATTATTTACTAAATAAT
1 TCATATCATAATTATGAAAATA-CCTTTTCTCTTATAATTATTTACTAAATAAT
9877322 TGTAGGAATT
Statistics
Matches: 475, Mismatches: 77, Indels: 34
0.81 0.13 0.06
Matches are distributed among these distances:
127 14 0.03
128 73 0.15
129 132 0.28
130 252 0.53
131 4 0.01
ACGTcount: A:0.41, C:0.14, G:0.06, T:0.39
Consensus pattern (130 bp):
TCATATCATAATTATGAAAATACCTTTTCTCTTATAATTATTTACTAAATAATCTCTTATGAAAT
TACCAAAATACCCTTTCTATTATATGATAAGAAATTAACATGTGACCAAATTGACTATTATGCCA
Found at i:9877235 original size:260 final size:257
Alignment explanation
Indices: 9876604--9877321 Score: 838
Period size: 260 Copynumber: 2.8 Consensus size: 257
9876594 TAACATATTT
* * * * * * *
9876604 CCAAATATATTATTATATCGTCATATCATAATTATGAAAATA--ATTTTTTTATAATTATTTACT
1 CCAAATAGACTATTATACCATCATATCATAATTAAGAAAATACCATTTTCTTCTAATTATTTACT
* * * * * *
9876667 AAATAATCCCTTATGAAATTATCAAAATACCCATATTCATTATAGGATAAAAAATTAACAAGTGA
66 AAATAATCTCTTATAAAATTATCAAAATACCC-T-TCCATTATATGATAAGAAATTAACATGTGA
* * * * * * *
9876732 CCAAATGCATTATTATGCCATTATACCAT-ATTATGAAAATATACATTCTTTTATAATTATTTAT
129 CCAAATGAACTATTATGCCATCATATCATAATTATGAAAATATCCATTCTCTTATAATTATTTAC
* * * * *
9876796 TAAATAATTTCTATGAAATTACCAAAATTTCATTTTCATTATATGATAAGAAATTGGCATGTGA
194 TAAATAATCTATATGAAATTACCAAAATTACATTTTCATTATATGATAAAAAATTGACATGTGA
* * * * *
9876860 TCAAATTGACTATTATACCATCATATCACAATTACGATAATACC-TTTTC-TCTTAAATTATTTA
1 CCAAATAGACTATTATACCATCATATCATAATTAAGAAAATACCATTTTCTTC-T-AATTATTTA
* * * *
9876923 CTAAATAATCTTTTATAAAATTACCAAAATACCCTTTCTATTATATGATAAGAAATTAGCATGTG
64 CTAAATAATCTCTTATAAAATTATCAAAATACCC-TTCCATTATATGATAAGAAATTAACATGTG
* * * **
9876988 ATCAAATGAACTATTATGCCATCATATAATAATTATGAAAATACCCCGTCTCTTATAATTATTTA
128 ACCAAATGAACTATTATGCCATCATATCATAATTATGAAAATATCCATTCTCTTATAATTATTTA
* *
9877053 CTAAATAATCTATGATGAAATTACTAAAA-TACCTTTTCTATTATATGATAAAAAATTGACATGT
193 CTAAATAATCTAT-ATGAAATTACCAAAATTACATTTTC-ATTATATGATAAAAAATTGACATGT
9877117 GA
256 GA
* **
9877119 CCAAATAGACTATTATGCTTTCATATCATAATTAAGAAAATACTCATTTTCTTCTAATTATTTAC
1 CCAAATAGACTATTATACCATCATATCATAATTAAGAAAATAC-CATTTTCTTCTAATTATTTAC
9877184 TAAATAATCTCTTA-AAAATTTATCAAAATACCCTTCCCATTATATGATAAGAAATTAACATGTG
65 TAAATAATCTCTTATAAAA-TTATCAAAATACCCTT-CCATTATATGATAAGAAATTAACATGTG
* * * ** * *
9877248 ACCAAATGGACTATTATGCCTTCATGTCATAATTACAAAAATATCCTTTATCTTATAATTATTTA
128 ACCAAATGAACTATTATGCCATCATATCATAATTATGAAAATATCCATTCTCTTATAATTATTTA
9877313 CTAAATAAT
193 CTAAATAAT
9877322 TGTAGGAATT
Statistics
Matches: 386, Mismatches: 64, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
256 34 0.09
257 52 0.13
258 86 0.22
259 80 0.21
260 126 0.33
261 6 0.02
262 2 0.01
ACGTcount: A:0.41, C:0.14, G:0.06, T:0.39
Consensus pattern (257 bp):
CCAAATAGACTATTATACCATCATATCATAATTAAGAAAATACCATTTTCTTCTAATTATTTACT
AAATAATCTCTTATAAAATTATCAAAATACCCTTCCATTATATGATAAGAAATTAACATGTGACC
AAATGAACTATTATGCCATCATATCATAATTATGAAAATATCCATTCTCTTATAATTATTTACTA
AATAATCTATATGAAATTACCAAAATTACATTTTCATTATATGATAAAAAATTGACATGTGA
Found at i:9879696 original size:33 final size:33
Alignment explanation
Indices: 9879654--9879732 Score: 104
Period size: 33 Copynumber: 2.4 Consensus size: 33
9879644 CCCTAAAATC
* *
9879654 TAAATCTTAAACCGAAACTCTAACACTAAACTT
1 TAAATCTTAAACCGAAACTCGAACACTAAACTA
* * * *
9879687 TAAACCTTAAACCTAAGCTCGAACCCTAAACTA
1 TAAATCTTAAACCGAAACTCGAACACTAAACTA
9879720 TAAATCTTAAACC
1 TAAATCTTAAACC
9879733 CCAAACCAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.44, C:0.27, G:0.04, T:0.25
Consensus pattern (33 bp):
TAAATCTTAAACCGAAACTCGAACACTAAACTA
Found at i:9900490 original size:2 final size:2
Alignment explanation
Indices: 9900483--9900507 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
9900473 AAGCCGAAAT
9900483 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
9900508 TAAAGAGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9901057 original size:22 final size:20
Alignment explanation
Indices: 9901023--9901068 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
9901013 AAATTTAAAC
9901023 TTTTTATATTATTTTAATATAA
1 TTTTTATATTA-TTTAA-ATAA
9901045 TTTTTA-ATATATTTAAATAA
1 TTTTTATAT-TATTTAAATAA
9901065 TTTT
1 TTTT
9901069 AGATATAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 8 0.35
21 7 0.30
22 8 0.35
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTTTATATTATTTAAATAA
Found at i:9906933 original size:30 final size:27
Alignment explanation
Indices: 9906878--9906943 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 27
9906868 CATTATTTTA
9906878 TGATTTTTATTTTTATGCATATTTATC
1 TGATTTTTATTTTTATGCATATTTATC
* * *
9906905 TTTATTTTTATTTTTAATCTCTTATTTATC
1 -TGATTTTTATTTTT-AT-GCATATTTATC
9906935 TGATTTTTA
1 TGATTTTTA
9906944 AGTTTTATTC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 13 0.41
29 10 0.31
30 9 0.28
ACGTcount: A:0.21, C:0.08, G:0.05, T:0.67
Consensus pattern (27 bp):
TGATTTTTATTTTTATGCATATTTATC
Found at i:9906950 original size:58 final size:59
Alignment explanation
Indices: 9906850--9906977 Score: 138
Period size: 58 Copynumber: 2.2 Consensus size: 59
9906840 TCCTTTTTTA
* * * *
9906850 ATTTTTATTTTTAGGTTTCATTATTTTATGATTTTTATTTTTATGCATATTT-ATCTTT
1 ATTTTTATTTTTAGATCTCATTATTTTATGATTTTTAGTTTTATGCATATTTAATATTT
* * *
9906908 ATTTTTATTTTTA-ATCTC-TTATTTATCTGATTTTTAAGTTTTATTCATCTTTAAATATTT
1 ATTTTTATTTTTAGATCTCATTATTT-TATGATTTTT-AGTTTTATGCATATTT-AATATTT
9906968 A-TTTTATTTT
1 ATTTTTATTTT
9906978 ACTTTATTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
56 6 0.10
57 12 0.20
58 26 0.44
59 9 0.15
60 6 0.10
ACGTcount: A:0.23, C:0.06, G:0.05, T:0.66
Consensus pattern (59 bp):
ATTTTTATTTTTAGATCTCATTATTTTATGATTTTTAGTTTTATGCATATTTAATATTT
Found at i:9907822 original size:24 final size:25
Alignment explanation
Indices: 9907781--9907827 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
9907771 TAGCTATCTT
* *
9907781 TTTTTTTTTTGCTATTTTCTTTTCA
1 TTTTTGTTTTGCTATTTTATTTTCA
*
9907806 TTTTTGTTTT-CTTTTTTATTTT
1 TTTTTGTTTTGCTATTTTATTTT
9907828 AGTTTATTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 10 0.53
25 9 0.47
ACGTcount: A:0.06, C:0.09, G:0.04, T:0.81
Consensus pattern (25 bp):
TTTTTGTTTTGCTATTTTATTTTCA
Found at i:9908800 original size:27 final size:28
Alignment explanation
Indices: 9908770--9908824 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
9908760 GTTTGGTTTG
* *
9908770 AGAAAATATTTTTTGTTTT-TATTTTTT
1 AGAAAATAGTTTTTATTTTCTATTTTTT
9908797 AGAAAATAGTTTTTATTTTCTATTTTTT
1 AGAAAATAGTTTTTATTTTCTATTTTTT
9908825 GTTTTCTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 17 0.68
28 8 0.32
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.64
Consensus pattern (28 bp):
AGAAAATAGTTTTTATTTTCTATTTTTT
Done.