Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 54 of 117
Found at i:10068422 original size:6 final size:6
Alignment explanation
Indices: 10068403--10068518 Score: 62
Period size: 6 Copynumber: 19.5 Consensus size: 6
10068393 TTTAATTTTT
* *
10068403 ATTTAA AATAAA ATTTAA ATTTAA ATTTAA ATTT-A A-TTAA TATATT-A
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA -AT-TTAA
* * * * * * *
10068450 ATTAAAA ATTAAA ATTT-T ATTTAA ATATAA ATTAAA GATTAAA ATTTTA
1 ATT-TAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA -ATTTAA ATTTAA
* *
10068499 A-TTAA ATATAA ATTAAA ATT
1 ATTTAA ATTTAA ATTTAA ATT
10068519 CAATGAATTA
Statistics
Matches: 84, Mismatches: 17, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
4 2 0.02
5 12 0.14
6 57 0.68
7 11 0.13
8 2 0.02
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (6 bp):
ATTTAA
Found at i:10068459 original size:30 final size:30
Alignment explanation
Indices: 10068425--10068516 Score: 132
Period size: 30 Copynumber: 3.1 Consensus size: 30
10068415 ATTTAAATTT
* *
10068425 AAATTTAAA-TTTAATTAATATATTAATTAA
1 AAATTAAAATTTTAATTAA-ATATAAATTAA
*
10068455 AAATTAAAATTTTATTTAAATATAAATTAA
1 AAATTAAAATTTTAATTAAATATAAATTAA
*
10068485 AGATTAAAATTTTAATTAAATATAAATTAA
1 AAATTAAAATTTTAATTAAATATAAATTAA
10068515 AA
1 AA
10068517 TTCAATGAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
30 47 0.85
31 8 0.15
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (30 bp):
AAATTAAAATTTTAATTAAATATAAATTAA
Found at i:10071980 original size:113 final size:114
Alignment explanation
Indices: 10071780--10071995 Score: 389
Period size: 113 Copynumber: 1.9 Consensus size: 114
10071770 AATTTACACG
*
10071780 AAATCCCTTGGTTTATGTATGTACTGCCTCTAATTTGATTTTTTTCAAGTGCAAGTTGGTTCAGT
1 AAATCCCTTGGTTTATGTATATACTGCCTCTAATTTGA-TTTTTTCAAGTGCAAGTTGGTTCAGT
10071845 TTTGCATGTAAGCCCTAGAGGCTTTCAATCACACTCCTAACCTTAAACTT
65 TTTGCATGTAAGCCCTAGAGGCTTTCAATCACACTCCTAACCTTAAACTT
*
10071895 AAATCCCTTGGTTTATGTATATTCTGCCTCTAATTTGA-TTTTTCAAGTGCAAGTTGGTTCAGTT
1 AAATCCCTTGGTTTATGTATATACTGCCTCTAATTTGATTTTTTCAAGTGCAAGTTGGTTCAGTT
*
10071959 TTGCATGTAAGCCCTAGAGGCTTTCAATCACATTCCT
66 TTGCATGTAAGCCCTAGAGGCTTTCAATCACACTCCT
10071996 TTTGCATGTA
Statistics
Matches: 98, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
113 62 0.63
115 36 0.37
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (114 bp):
AAATCCCTTGGTTTATGTATATACTGCCTCTAATTTGATTTTTTCAAGTGCAAGTTGGTTCAGTT
TTGCATGTAAGCCCTAGAGGCTTTCAATCACACTCCTAACCTTAAACTT
Found at i:10072008 original size:38 final size:38
Alignment explanation
Indices: 10071957--10072030 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
10071947 GTTGGTTCAG
*
10071957 TTTTGCATGTAAGCCCTAGAGGCTTTCAATCACATTCC
1 TTTTGCATGTAAGCCCTAGAGGATTTCAATCACATTCC
*
10071995 TTTTGCATGTAAGCCCTAGAGGATTTTAATCACATT
1 TTTTGCATGTAAGCCCTAGAGGATTTCAATCACATT
10072031 TTTTTGTCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (38 bp):
TTTTGCATGTAAGCCCTAGAGGATTTCAATCACATTCC
Found at i:10072323 original size:2 final size:2
Alignment explanation
Indices: 10072316--10072341 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10072306 GTTTATTAAG
10072316 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
10072342 GCTAATATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10073865 original size:19 final size:20
Alignment explanation
Indices: 10073827--10073865 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
10073817 AAATAATCAA
* *
10073827 GTTTAATTTGAAATAAATTT
1 GTTTAAGTTGAAACAAATTT
10073847 GTTTAAGTT-AAACAAATTT
1 GTTTAAGTTGAAACAAATTT
10073866 ATTGTAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.41, C:0.03, G:0.10, T:0.46
Consensus pattern (20 bp):
GTTTAAGTTGAAACAAATTT
Found at i:10074643 original size:163 final size:161
Alignment explanation
Indices: 10074361--10075245 Score: 730
Period size: 163 Copynumber: 5.4 Consensus size: 161
10074351 AATATTGTAA
* * * * ** * *
10074361 TATAAAGTAATATATAGGGTATATTTAGAATTTCTTTTCAAAACTTTTGACAAAAGCAATTACGT
1 TATAAAGTAATATATAAGTTGTATTTAGAATTCCTTTT-AAAAC-TTTGACGTATGCAATTACAT
* ** * * ** * *
10074426 AAAATAAAAAC-TCACTGTTTCACTCGTAATTAATTGTCTCCACATGATATCTATCAATAATTCG
64 AAAATAAAATCTTCACCATTTCACTCGCAATTAAGTGTCTCCATGTGCTATCTATCCATAATTCG
* *
10074490 ACATGAATTTTAGATGTATTTAATAGTATGGTG
129 ACATGAATTTGAGATGTATTTAATAGTAGGGTG
* * * *
10074523 TATAAAATAATATATAAGTTGTACTTAGAATTACCTTTTGAAACTTTGACGTCTGCAATTACATA
1 TATAAAGTAATATATAAGTTGTATTTAGAATT-CCTTTTAAAACTTTGACGTATGCAATTACATA
*** *** * * * *
10074588 AAATAAAATCTTCTATTGTTTCACTTTTAATTAAATGTCTTCATGTTCTATCTATCCATAGTT-G
65 AAATAAAATCTTC-ACCATTTCACTCGCAATTAAGTGTCTCCATGTGCTATCTATCCATAATTCG
* *
10074652 ACATGAATTTGAGATGTATTTAATAATAGGGCG
129 ACATGAATTTGAGATGTATTTAATAGTAGGGTG
** * * * * ** *
10074685 TATAAAGTAATATATGGGATATATTTAGAATTCTTTTTCAAACTTTGACGTACACAATTACGTAA
1 TATAAAGTAATATATAAGTTGTATTTAGAATTCCTTTTAAAACTTTGACGTATGCAATTACATAA
* * * * * * *
10074750 AATAGAATTTTCCACCATTTCACTCACAATTAAGTGTCTCCATGTACTATCTACCCAT-AGTCAA
66 AATAAAATCTT-CACCATTTCACTCGCAATTAAGTGTCTCCATGTGCTATCTATCCATAATTCGA
* *
10074814 CATGAATTTGAAATGTTATTTAATAGTAAGGTG
130 CATGAATTTGAGATG-TATTTAATAGTAGGGTG
* * * * *
10074847 TATAAAGTAATATATAAGGTGTATTTAGAATTTCCCTTTGAAACTCTAACGTATGCAATTACATA
1 TATAAAGTAATATATAAGTTGTATTTAGAA-TTCCTTTTAAAACTTTGACGTATGCAATTACATA
* * * * * *
10074912 AAATACAATTTTCCATCATTTCACTCGCAATTAAGTGGTCTCAACATAT--TATCAACCCATAA-
65 AAATAAAATCTT-CACCATTTCACTCGCAATTAAGT-GTCTC--CATGTGCTATCTATCCATAAT
* *
10074974 TCGACATGAATTTGAGATGTATTTAATAAT-GAAGTG
126 TCGACATGAATTTGAGATGTATTTAATAGTAG-GGTG
* * **
10075010 TATAAAGTAATATATGAGAG-TGTATTTAAAATTCTTTTTCAAAAACTTTGACGTATATAATTAC
1 TATAAAGTAATATAT-A-AGTTGTATTTAGAATTCCTTTT--AAAACTTTGACGTATGCAATTAC
* * * *
10075074 ATAAAATAGAACAT-TTCACCATTTCACTAGCAATTTAGTGTCTCCACGTGCTATCTATCAAT-A
62 ATAAAATA-AA-ATCTTCACCATTTCACTCGCAATTAAGTGTCTCCATGTGCTATCTATCCATAA
* * *
10075137 TTCGACATGACTTTGAGATATATTTAATAGTGGGAGTTG
125 TTCGACATGAATTTGAGATGTATTTAATAGTAGG-G-TG
* * * * * * * *
10075176 CATAAAATGATATATGA-TGTGTATTTAAAATTCCCTTTAAAAATTTTGGCGTATGCAATTACAT
1 TATAAAGTAATATATAAGT-TGTATTTAGAATT-CCTTTTAAAACTTTGACGTATGCAATTACAT
10075240 AAAATA
64 AAAATA
10075246 GAACCTTCCA
Statistics
Matches: 584, Mismatches: 112, Indels: 52
0.78 0.15 0.07
Matches are distributed among these distances:
160 1 0.00
161 111 0.19
162 133 0.23
163 137 0.23
164 111 0.19
165 64 0.11
166 25 0.04
167 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (161 bp):
TATAAAGTAATATATAAGTTGTATTTAGAATTCCTTTTAAAACTTTGACGTATGCAATTACATAA
AATAAAATCTTCACCATTTCACTCGCAATTAAGTGTCTCCATGTGCTATCTATCCATAATTCGAC
ATGAATTTGAGATGTATTTAATAGTAGGGTG
Found at i:10074657 original size:162 final size:160
Alignment explanation
Indices: 10074361--10075245 Score: 620
Period size: 162 Copynumber: 5.4 Consensus size: 160
10074351 AATATTGTAA
* * * * * **** *
10074361 TATAAAGTAATATATAGGGTATATTTAGAATTTCTTTTCAAAACTTTTGACAAAAGCAATTACGT
1 TATAAAGTAATATATAAGATGTATTTAGAATTCCTTTT-GAAAC-TTTGACGTCTGCAATTACAT
* * * * *
10074426 AAAATAAAAAC-TCACTGTTTCACTCGTAATTAATTGTCTCCACATG-A-TATCTATCAATAATT
64 AAAATAAAATCTTCACTGTTTCACTCATAATTAAATGTCT-C-CATGTACTATCTATCCATAGTT
* *
10074488 CGACATGAATTTTAGATGTATTTAATAGTATGGTG
127 -GACATGAATTTGAGATGTATTTAATAGTAAGGTG
* * *
10074523 TATAAAATAATATATAAGTTGTACTTAGAATTACCTTTTGAAACTTTGACGTCTGCAATTACATA
1 TATAAAGTAATATATAAGATGTATTTAGAATT-CCTTTTGAAACTTTGACGTCTGCAATTACATA
* ** * *
10074588 AAATAAAATCTTCTATTGTTTCACTTTTAATTAAATGTCTTCATGTTCTATCTATCCATAGTTGA
65 AAATAAAATCTTC-ACTGTTTCACTCATAATTAAATGTCTCCATGTACTATCTATCCATAGTTGA
* * *
10074653 CATGAATTTGAGATGTATTTAATAATAGGGCG
129 CATGAATTTGAGATGTATTTAATAGTAAGGTG
** * * * * *
10074685 TATAAAGTAATATATGGGATATATTTAGAATTCTTTTTCAAACTTTGACGTAC-ACAATTACGTA
1 TATAAAGTAATATATAAGATGTATTTAGAATTCCTTTTGAAACTTTGACGT-CTGCAATTACATA
* * ** * * * **
10074749 AAATAGAATTTTCCACCATTTCACTCACAATTAAGTGTCTCCATGTACTATCTACCCATAGTCAA
65 AAATAAAATCTT-CACTGTTTCACTCATAATTAAATGTCTCCATGTACTATCTATCCATAGTTGA
*
10074814 CATGAATTTGAAATGTTATTTAATAGTAAGGTG
129 CATGAATTTGAGATG-TATTTAATAGTAAGGTG
* * * * *
10074847 TATAAAGTAATATATAAGGTGTATTTAGAATTTCCCTTTGAAACTCTAACGTATGCAATTACATA
1 TATAAAGTAATATATAAGATGTATTTAGAA-TTCCTTTTGAAACTTTGACGTCTGCAATTACATA
* * * ** * * ** * * * * *
10074912 AAATACAATTTTC-CATCATTTCACTCGCAATTAAGTGGTCTCAACATATTATCAACCCATAATC
65 AAATAAAATCTTCAC-T-GTTTCACTCATAATTAAAT-GTCTCCATGTACTATCTATCCATAGTT
*
10074976 GACATGAATTTGAGATGTATTTAATAATGAA-GTG
127 GACATGAATTTGAGATGTATTTAATAGT-AAGGTG
* * * * * **
10075010 TATAAAGTAATATATGAGAGTGTATTTAAAATTCTTTTTCAAAAACTTTGACGTATATAATTACA
1 TATAAAGTAATATATAAGA-TGTATTTAGAATTCCTTTT--GAAACTTTGACGTCTGCAATTACA
** * * * * * *
10075075 TAAAATAGAACAT-TTCACCATTTCACT-AGCAATTTAGTGTCTCCACGTGCTATCTATCAATA-
63 TAAAATA-AA-ATCTTCACTGTTTCACTCA-TAATTAAATGTCTCCATGTACTATCTATCCATAG
* * * *
10075137 TTCGACATGACTTTGAGATATATTTAATAGTGGGAGTTG
125 TT-GACATGAATTTGAGATGTATTTAATAGT--AAGGTG
* * * * * ** * * *
10075176 CATAAAATGATATATGATG-TGTATTTAAAATTCCCTTTAAAAATTTTGGCGTATGCAATTACAT
1 TATAAAGTAATATAT-AAGATGTATTTAGAATT-CCTTTTGAAACTTTGACGTCTGCAATTACAT
10075240 AAAATA
64 AAAATA
10075246 GAACCTTCCA
Statistics
Matches: 582, Mismatches: 115, Indels: 50
0.78 0.15 0.07
Matches are distributed among these distances:
161 119 0.20
162 132 0.23
163 131 0.23
164 117 0.20
165 57 0.10
166 22 0.04
167 4 0.01
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (160 bp):
TATAAAGTAATATATAAGATGTATTTAGAATTCCTTTTGAAACTTTGACGTCTGCAATTACATAA
AATAAAATCTTCACTGTTTCACTCATAATTAAATGTCTCCATGTACTATCTATCCATAGTTGACA
TGAATTTGAGATGTATTTAATAGTAAGGTG
Found at i:10075249 original size:164 final size:162
Alignment explanation
Indices: 10074443--10075248 Score: 684
Period size: 164 Copynumber: 4.9 Consensus size: 162
10074433 AAACTCACTG
* * * * * *
10074443 TTTCACTCGTAATTAATTGTCTCCACATGA-TATCTATCAATAATTCGACATGAATTTTAGATGT
1 TTTCACTAGCAATTAAGTGTCTCCACGT-ACTATCTATCCAT-ATTCGACATGAATTTGAGATGT
* * * * * **
10074507 ATTTAATAGTATG-GTGTATAAAATAATATAT-AAGTTGTACTTAGAATTACCTTTTGAAACTTT
64 ATTTAATAGT-GGAGTGTATAAAGTAATATATGAAG-TGTATTTAAAATTCCCTTTAAAAACTTT
* * ***
10074570 GACGTCTGCAATTACATAAAATA-AAATCTTCTATTG
127 GACGTATGCAATTACATAAAATAGAAAT-TTCCACCA
*** * * * *
10074606 TTTCACTTTTAATTAAATGTCTTCATGTTCTATCTATCCATAGTT-GACATGAATTTGAGATGTA
1 TTTCACTAGCAATTAAGTGTCTCCACGTACTATCTATCCATA-TTCGACATGAATTTGAGATGTA
* * * * * * **
10074670 TTTAATAATAGG-GCGTATAAAGTAATATATG-GGATATATTTAGAATT-CTTTTTCAAACTTTG
65 TTTAATAGT-GGAGTGTATAAAGTAATATATGAAG-TGTATTTAAAATTCCCTTTAAAAACTTTG
** * *
10074732 ACGTACACAATTACGTAAAATAGAATTTTCCACCA
128 ACGTATGCAATTACATAAAATAGAAATTTCCACCA
* * * * *
10074767 TTTCACTCA-CAATTAAGTGTCTCCATGTACTATCTACCCATAGTCAACATGAATTTGAAATGTT
1 TTTCACT-AGCAATTAAGTGTCTCCACGTACTATCTATCCATATTCGACATGAATTTGAGATG-T
* * * *
10074831 ATTTAATAGT-AAGGTGTATAAAGTAATATAT-AAGGTGTATTTAGAATTTCCCTTT-GAAACTC
64 ATTTAATAGTGGA-GTGTATAAAGTAATATATGAA-GTGTATTTA-AAATTCCCTTTAAAAACTT
* * * *
10074893 TAACGTATGCAATTACATAAAATACAATTTTCCATCA
126 TGACGTATGCAATTACATAAAATAGAAATTTCCACCA
* * * * * * *
10074930 TTTCACTCGCAATTAAGTGGTCTCAACATATTATCAACCCATAATCGACATGAATTTGAGATGTA
1 TTTCACTAGCAATTAAGT-GTCTCCACGTACTATCTATCCATATTCGACATGAATTTGAGATGTA
* * **
10074995 TTTAATAATGAAGTGTATAAAGTAATATATGAGAGTGTATTTAAAATTCTTTTTCAAAAACTTTG
65 TTTAATAGTGGAGTGTATAAAGTAATATATGA-AGTGTATTTAAAATTCCCTTT-AAAAACTTTG
**
10075060 ACGTATATAATTACATAAAATAGAACATTT-CACCA
128 ACGTATGCAATTACATAAAATAGAA-ATTTCCACCA
* * * * *
10075095 TTTCACTAGCAATTTAGTGTCTCCACGTGCTATCTATCAATATTCGACATGACTTTGAGATATAT
1 TTTCACTAGCAATTAAGTGTCTCCACGTACTATCTATCCATATTCGACATGAATTTGAGATGTAT
* * * * * *
10075160 TTAATAGTGGGAGTTGCATAAAATGATATATGATGTGTATTTAAAATTCCCTTTAAAAATTTTGG
66 TTAATAGT-GGAG-TGTATAAAGTAATATATGAAGTGTATTTAAAATTCCCTTTAAAAACTTTGA
10075225 CGTATGCAATTACATAAAATAGAA
129 CGTATGCAATTACATAAAATAGAA
10075249 CCTTCCATTA
Statistics
Matches: 522, Mismatches: 98, Indels: 45
0.78 0.15 0.07
Matches are distributed among these distances:
160 1 0.00
161 85 0.16
162 94 0.18
163 126 0.24
164 127 0.24
165 70 0.13
166 19 0.04
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.38
Consensus pattern (162 bp):
TTTCACTAGCAATTAAGTGTCTCCACGTACTATCTATCCATATTCGACATGAATTTGAGATGTAT
TTAATAGTGGAGTGTATAAAGTAATATATGAAGTGTATTTAAAATTCCCTTTAAAAACTTTGACG
TATGCAATTACATAAAATAGAAATTTCCACCA
Found at i:10075832 original size:162 final size:160
Alignment explanation
Indices: 10075388--10076141 Score: 538
Period size: 162 Copynumber: 4.6 Consensus size: 160
10075378 TATTGAATAG
* * * * *
10075388 TAAGGTGTATTTAGAATTCCCCTTCGAAAATTTGAC-TATGCAATTACGTAAAATAAAACCTTCC
1 TAAGGTGTATTTAAAATTTCTCTTTGAAACTTTGACGTATGCAATTACGTAAAATAAAACCTTCC
* ** * *
10075452 ACCGTTTCACTTGCAATTAAGTGTCTCTATATGCTATCTACCCATAGTCGACAAGAATTTGAGAT
66 ACTGTTTCACTTGCAATTAAGTGTCTCTACGTGCTATC-ACCCATAGTCGATATGAATTTGAGAT
* *
10075517 GTGTTTAATAATAAGGTATATAAAGTAATATA
130 GTATTTAATAAT-AGGTGTATAAAGTAATATA
* * * * **
10075549 TGAA-GTGTATTT-AGA-TTCTTCTTTGAAACTTTGACGTATGTAATTACATAAAATAGAATATT
1 T-AAGGTGTATTTAAAATTTC-TCTTTGAAACTTTGACGTATGCAATTACGTAAAATAAAACCTT
* * * * *
10075611 CTATTGTTTCACTTACAATTAAGTGTCTCTACGCGCTA-CATATCCATAGTC-ATTATGAATTTG
64 CCACTGTTTCACTTGCAATTAAGTGTCTCTACGTGCTATC--ACCCATAGTCGA-TATGAATTTG
10075674 AGATGTATTTAATAATATGGTGTATAAAGTAATATA
126 AGATGTATTTAATAATA-GGTGTATAAAGTAATATA
* *
10075710 TAAGGTGTATTTAAAATTTCTCTTTGAAACTTTGACGTATGCAATTATGTAACATAAAACCTTCC
1 TAAGGTGTATTTAAAATTTCTCTTTGAAACTTTGACGTATGCAATTACGTAAAATAAAACCTTCC
* * * * * * *
10075775 ACTGTTTCACTGGCAATTAAATGTCTCAACGTGTTATTCACCCATAGTTGGTATGAATTTGAAAT
66 ACTGTTTCACTTGCAATTAAGTGTCTCTACGTGCTA-TCACCCATAGTCGATATGAATTTGAGAT
* * *
10075840 GTATATAATAGTGAGGTGTATTAAGTAATATA
130 GTATTTAATAAT-AGGTGTATAAAGTAATATA
* * * * *
10075872 TTAGGTGTATTAAGTAATATATTGGTGTATTTAGAATTTTTCTTTGAAACTTTGACGTATGCAAT
1 TAAGGTGTATT---TAA-A-ATT--TCTCTTT-GAA----ACTTTG--AC-GT-A--T--GCAAT
* * * ** * * * * *
10075937 TACGTAATATAGAACCTTCTACCATTTCAC--ACAATTAAGTATCTCAATGTGTTATCTACCCAT
46 TACGTAAAATAAAACCTTCCACTGTTTCACTTGCAATTAAGTGTCTCTACGTGCTATC-ACCCAT
* * * * *
10076000 AGTC-AGCATGAATTTGAGATATATTTGATAGTGAGGTGTATAAAATAATATA
110 AGTCGA-TATGAATTTGAGATGTATTTAATAAT-AGGTGTATAAAGTAATATA
* * * * * * * *
10076052 TTATGTGTATTTAAATTTTTTTTTTTGAAACTTTGACATATGCAATTACGT-AAATAAAATCTTT
1 TAAGGTGTATTTAAA-ATTTCTCTTTGAAACTTTGACGTATGCAATTACGTAAAATAAAACCTTC
* **
10076116 CACAGTTTCACTCACAATTAAGTGTC
65 CACTGTTTCACTTGCAATTAAGTGTC
10076142 ATGAATTTAA
Statistics
Matches: 472, Mismatches: 84, Indels: 73
0.75 0.13 0.12
Matches are distributed among these distances:
159 2 0.00
160 36 0.08
161 130 0.28
162 140 0.30
163 5 0.01
164 1 0.00
165 4 0.01
166 2 0.00
167 5 0.01
169 10 0.02
170 3 0.01
173 3 0.01
174 10 0.02
176 6 0.01
177 4 0.01
178 1 0.00
179 2 0.00
180 79 0.17
182 29 0.06
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (160 bp):
TAAGGTGTATTTAAAATTTCTCTTTGAAACTTTGACGTATGCAATTACGTAAAATAAAACCTTCC
ACTGTTTCACTTGCAATTAAGTGTCTCTACGTGCTATCACCCATAGTCGATATGAATTTGAGATG
TATTTAATAATAGGTGTATAAAGTAATATA
Found at i:10075878 original size:21 final size:21
Alignment explanation
Indices: 10075853--10075902 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
10075843 TATAATAGTG
10075853 AGGTGTATTAAGTAATATATT
1 AGGTGTATTAAGTAATATATT
10075874 AGGTGTATTAAGTAATATATT
1 AGGTGTATTAAGTAATATATT
10075895 -GGTGTATT
1 AGGTGTATT
10075903 TAGAATTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 8 0.28
21 21 0.72
ACGTcount: A:0.34, C:0.00, G:0.22, T:0.44
Consensus pattern (21 bp):
AGGTGTATTAAGTAATATATT
Found at i:10076037 original size:180 final size:182
Alignment explanation
Indices: 10075692--10076062 Score: 487
Period size: 180 Copynumber: 2.0 Consensus size: 182
10075682 TTAATAATAT
*
10075692 GGTGTATAAAGTAATATATAAGGTGTATTTAAAATTTCTCTTTGAAACTTTGACGTATGCAATTA
1 GGTGTATTAAGTAATATATAAGGTGTATTTAAAATTTCTCTTTGAAACTTTGACGTATGCAATTA
* ** * *
10075757 TGTAACATAAAACCTTCCACTGTTTCACTGGCAATTAAATGTCTCAACGTGTTATTCACCCATAG
66 CGTAACATAAAACCTTCCACCATTTCAC-GACAATTAAATATCTCAACGTGTTATTCACCCATAG
** * * * *
10075822 TTGGTATGAATTTGAAATGTATATAATAGTGAGGTGTATTAAGTAATATATTA
130 TCAGCATGAATTTGAAATATATATAATAGTGAGGTGTATAAAATAATATATTA
* * *
10075875 GGTGTATTAAGTAATATAT-TGGTGTATTTAGAATTTTTCTTTGAAACTTTGACGTATGCAATTA
1 GGTGTATTAAGTAATATATAAGGTGTATTTAAAATTTCTCTTTGAAACTTTGACGTATGCAATTA
* * * * *
10075939 CGTAATATAGAACCTTCTACCATTTCAC-ACAATTAAGTATCTCAATGTGTTA-TCTACCCATAG
66 CGTAACATAAAACCTTCCACCATTTCACGACAATTAAATATCTCAACGTGTTATTC-ACCCATAG
* * *
10076002 TCAGCATGAATTTGAGATATATTTGATAGTGAGGTGTATAAAATAATATATTA
130 TCAGCATGAATTTGAAATATATATAATAGTGAGGTGTATAAAATAATATATTA
*
10076055 TGTGTATT
1 GGTGTATT
10076063 TAAATTTTTT
Statistics
Matches: 163, Mismatches: 24, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
179 2 0.01
180 79 0.48
182 64 0.39
183 18 0.11
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (182 bp):
GGTGTATTAAGTAATATATAAGGTGTATTTAAAATTTCTCTTTGAAACTTTGACGTATGCAATTA
CGTAACATAAAACCTTCCACCATTTCACGACAATTAAATATCTCAACGTGTTATTCACCCATAGT
CAGCATGAATTTGAAATATATATAATAGTGAGGTGTATAAAATAATATATTA
Found at i:10076260 original size:134 final size:134
Alignment explanation
Indices: 10076006--10076275 Score: 321
Period size: 134 Copynumber: 2.0 Consensus size: 134
10075996 CCATAGTCAG
* * * *
10076006 CATGAATTTGAGATATATTTGATAGTGAGGTGTATAAAATAATATATTATGTGTATTTAAATTTT
1 CATGAATTTAAGATATATTTAATAGTGAGGTGTATAAAATAATATAGTAGGTGTATTTAAA-TTT
* ** * * * *
10076071 TTTTTTTGAAACTTTGACATATGCAATTACGTAAATAAAATCTTTCACAGTTTCACTCACAATTA
65 CTCCTCTGAAACTTTAACATATGCAATTACGTAAATAAAACCTTCCACAGTTTCACTCACAATTA
10076136 AGTGT
130 AGTGT
* *
10076141 CATGAATTTAAGATATATTTAATAGTG-GGTGTATAAAGTAATGTAGTAGGTGTATTTAGAA-TT
1 CATGAATTTAAGATATATTTAATAGTGAGGTGTATAAAATAATATAGTAGGTGTATTTA-AATTT
* * * **
10076204 CTCCTCTGAAACTTTAACGTATGCAATTACGTAATATAGAACCTTCCATTA-TTTCACTCGTAAT
65 CTCCTCTGAAACTTTAACATATGCAATTACGTAA-ATAAAACCTTCCA-CAGTTTCACTCACAAT
10076268 TAAGTGT
128 TAAGTGT
10076275 C
1 C
10076276 TCCACGTGCC
Statistics
Matches: 114, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
133 30 0.26
134 56 0.49
135 28 0.25
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.40
Consensus pattern (134 bp):
CATGAATTTAAGATATATTTAATAGTGAGGTGTATAAAATAATATAGTAGGTGTATTTAAATTTC
TCCTCTGAAACTTTAACATATGCAATTACGTAAATAAAACCTTCCACAGTTTCACTCACAATTAA
GTGT
Found at i:10076411 original size:162 final size:162
Alignment explanation
Indices: 10076142--10076760 Score: 730
Period size: 162 Copynumber: 3.8 Consensus size: 162
10076132 ATTAAGTGTC
* * *
10076142 ATGAATTTAAGATATATTTAATAGTG-GGTGTATAAAGTAATGTAGTAGGTGTATTTAGAA-TTC
1 ATGAATTTGAGATATATTTAATAGTGAGGTGTATAAAGTAATATATTAGGTGTATTTAGAATTTC
* * * * *
10076205 TCCTCTGAAACTTTAACGTATGCAATTACGTAATATAGAACCTTCCATTATTTCACTCGTAATTA
66 T-CTTTGAAACTTTGACGTATGCAATTACGTAATATAAAACCTTCCACTATTTCACTCGCAATTA
* ** *
10076270 AGTGTCTCCACGTGCCATCTACTCATAATTGAT
130 AGTGTCTCAACGTGTTATCTACCCATAATTGAT
* * *
10076303 ATGAATTTGAGATGTATTTAATAGT-AGGGTGTATAAAGTAATATATAAGGTGTATTTAAAATTT
1 ATGAATTTGAGATATATTTAATAGTGA-GGTGTATAAAGTAATATATTAGGTGTATTTAGAATTT
* * * *
10076367 CTCTTTGAAACTTTGACGTATGCAATTATGTAACATAAAACCTTCCACTGTTTCACTGGCAATTA
65 CTCTTTGAAACTTTGACGTATGCAATTACGTAATATAAAACCTTCCACTATTTCACTCGCAATTA
* * * *
10076432 AATGTCTCAACGTGTTGT-TCACCCATAGTTGGT
130 AGTGTCTCAACGTGTTATCT-ACCCATAATTGAT
* * * *
10076465 ATGAATTTGAGATATATATAATAGTGAGGTGTATTAAGTAATATATTAGGTGTATTTATAATTTT
1 ATGAATTTGAGATATATTTAATAGTGAGGTGTATAAAGTAATATATTAGGTGTATTTAGAATTTC
* ** *
10076530 TCTTTGAAACTTTGACGTATGCAATTACGTAATATAGAACCTTATACTATTTCA--CACAATTAA
66 TCTTTGAAACTTTGACGTATGCAATTACGTAATATAAAACCTTCCACTATTTCACTCGCAATTAA
* * * * *
10076593 GTATCTCAATGTGTTATCTACCCAT-AGTCAGC
131 GTGTCTCAACGTGTTATCTACCCATAATTGA-T
* *
10076625 ATGAATTTGAGATATATATTGATAGTGAGGTGTATAAAGTAATATATTATGTGTATTTAGAATTT
1 ATGAATTTGAGATATAT-TTAATAGTGAGGTGTATAAAGTAATATATTAGGTGTATTTAGAATTT
* * * * * * * *
10076690 CTTTTTGAAACTTTGACATATGTAATTACGTAAAATAAAATCTTTCACAATTTCACTCACAATTA
65 CTCTTTGAAACTTTGACGTATGCAATTACGTAATATAAAACCTTCCACTATTTCACTCGCAATTA
10076755 AGTGTC
130 AGTGTC
10076761 ATGAATTTAA
Statistics
Matches: 386, Mismatches: 62, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
159 1 0.00
160 43 0.11
161 112 0.29
162 212 0.55
163 18 0.05
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.39
Consensus pattern (162 bp):
ATGAATTTGAGATATATTTAATAGTGAGGTGTATAAAGTAATATATTAGGTGTATTTAGAATTTC
TCTTTGAAACTTTGACGTATGCAATTACGTAATATAAAACCTTCCACTATTTCACTCGCAATTAA
GTGTCTCAACGTGTTATCTACCCATAATTGAT
Found at i:10076746 original size:323 final size:322
Alignment explanation
Indices: 10076142--10076760 Score: 812
Period size: 323 Copynumber: 1.9 Consensus size: 322
10076132 ATTAAGTGTC
* *
10076142 ATGAATTTAAGATATATTTAATAGTGGGTGTATAAAGTAATGTAGTAGGTGTATTTAGAATTCTC
1 ATGAATTTAAGATATATATAATAGTGGGTGTATAAAGTAATATAGTAGGTGTATTTAGAATTCTC
* * *
10076207 CTCTGAAACTTTAACGTATGCAATTACGTAATATAGAACCTTCCATTATTTCACTCGTAATTAAG
66 CTCTGAAACTTTAACGTATGCAATTACGTAATATAGAACCTTACACTATTTCACACG-AATTAAG
* * * * * *
10076272 TGTCTCCACGTGCCATCTACTCATAATTGATATGAATTTGAGATGTATTTAATAGTAGGGTGTAT
130 TATCTCAACGTGCCATCTACCCATAATAGACATGAATTTGAGATATATTTAATAGTAGGGTGTAT
* * *
10076337 AAAGTAATATATAAGGTGTATTTAAAATTTCTCTTTGAAACTTTGACGTATGCAATTATGTAACA
195 AAAGTAATATATAAGGTGTATTTAAAATTTCTCTTTGAAACTTTGACATATGCAATTACGTAAAA
** **
10076402 TAAAACCTTCCACTGTTTCACTGGCAATTAAATGTCTCAACGTGTTGTTCACCCATAGTTGGT
260 TAAAACCTTCCACAATTTCACTCACAATTAAATGTCTCAACGTGTTGTTCACCCATAGTTGGT
* * * * *
10076465 ATGAATTTGAGATATATATAATAGTGAGGTGTATTAAGTAATATATTAGGTGTATTTATAATTTT
1 ATGAATTTAAGATATATATAATAGTG-GGTGTATAAAGTAATATAGTAGGTGTATTTAGAATTCT
* * * *
10076530 TCTTTGAAACTTTGACGTATGCAATTACGTAATATAGAACCTTATACTATTTCACAC-AATTAAG
65 CCTCTGAAACTTTAACGTATGCAATTACGTAATATAGAACCTTACACTATTTCACACGAATTAAG
* ** * *
10076594 TATCTCAATGTGTTATCTACCCATAGTCAG-CATGAATTTGAGATATATATTGATAGT-GAGGTG
130 TATCTCAACGTGCCATCTACCCATAAT-AGACATGAATTTGAGATATAT-TTAATAGTAG-GGTG
* * * * *
10076657 TATAAAGTAATATATTATGTGTATTTAGAATTTCTTTTTGAAACTTTGACATATGTAATTACGTA
192 TATAAAGTAATATATAAGGTGTATTTAAAATTTCTCTTTGAAACTTTGACATATGCAATTACGTA
* * *
10076722 AAATAAAATCTTTCACAATTTCACTCACAATTAAGTGTC
257 AAATAAAACCTTCCACAATTTCACTCACAATTAAATGTC
10076761 ATGAATTTAA
Statistics
Matches: 252, Mismatches: 40, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
322 44 0.17
323 125 0.50
324 83 0.33
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.39
Consensus pattern (322 bp):
ATGAATTTAAGATATATATAATAGTGGGTGTATAAAGTAATATAGTAGGTGTATTTAGAATTCTC
CTCTGAAACTTTAACGTATGCAATTACGTAATATAGAACCTTACACTATTTCACACGAATTAAGT
ATCTCAACGTGCCATCTACCCATAATAGACATGAATTTGAGATATATTTAATAGTAGGGTGTATA
AAGTAATATATAAGGTGTATTTAAAATTTCTCTTTGAAACTTTGACATATGCAATTACGTAAAAT
AAAACCTTCCACAATTTCACTCACAATTAAATGTCTCAACGTGTTGTTCACCCATAGTTGGT
Found at i:10077003 original size:161 final size:161
Alignment explanation
Indices: 10076761--10077372 Score: 703
Period size: 161 Copynumber: 3.8 Consensus size: 161
10076751 ATTAAGTGTC
*
10076761 ATGAATTTAAGATATA--TAATAGTG-GGTGTATAAAGTAATATATTA-GTGTATTTAGAA-TTC
1 ATGAATTTGAGATATATTTAATAGTGAGGTGTATAAAGTAATATATTAGGTGTATTTAGAATTTC
* * * * *
10076821 TCCTTCAAAACTTTAACGTATGCAATTACGTAATATAGAACATTCACTGTTTCACTCGTAATTAA
66 T-CTTTAAAACTTTGACGTATGCAATTACGTAATATAAAACCTTCACTGTTTCACTCGCAATTAA
** *
10076886 GTGTCTTC-ACGTGCCATCTACTCATAATCGAT
130 GTGTC-TCAACGTGTTATCTACCCATAATCGAT
* *
10076918 ATGAATTTGAGATATATTTAATAGT-AGGGTGTATAAAGTAATATATAAGGTGTATTTAAAATTT
1 ATGAATTTGAGATATATTTAATAGTGA-GGTGTATAAAGTAATATATTAGGTGTATTTAGAATTT
* * * *
10076982 CTCTTTGAAACTTTGACGTATGCAATTATGTAACATAAAACCTTCCATTGTTTCACT-GACAATT
65 CTCTTTAAAACTTTGACGTATGCAATTACGTAATATAAAACCTT-CACTGTTTCACTCG-CAATT
* * *
10077046 AAATGTCTCAACGTGTTAT-TCACCCATAGT-GGT
128 AAGTGTCTCAACGTGTTATCT-ACCCATAATCGAT
* * * *
10077079 ATGAATTTGAGATGTATATAATAGTGAGGTGTATTAAGTAATATATTAGCTGTATTTAGAATTT-
1 ATGAATTTGAGATATATTTAATAGTGAGGTGTATAAAGTAATATATTAGGTGTATTTAGAATTTC
* ** *
10077143 TCTTTGAAACTTTGACGTATGCAATTACGTAATATAAAACCTTCTACCATTTCA--CACAATTAA
66 TCTTTAAAACTTTGACGTATGCAATTACGTAATATAAAACCTTC-ACTGTTTCACTCGCAATTAA
* * * *
10077206 GTATCTCAATGTGTTATCTACCCGTAATC-AGC
130 GTGTCTCAACGTGTTATCTACCCATAATCGA-T
* *
10077238 ATGAATTTGAGATATATTTGATAGTGAGGTGTATAAAGTAATATATTATGTGTATTTAGAATTTC
1 ATGAATTTGAGATATATTTAATAGTGAGGTGTATAAAGTAATATATTAGGTGTATTTAGAATTTC
* * * * * *
10077303 TTTTTAAAACTTTGACGTATGCAATTACGTAAAATAAAATCTTTTACAGTTTCACTCACAATTAA
66 TCTTTAAAACTTTGACGTATGCAATTACGTAATATAAAA-CCTTCACTGTTTCACTCGCAATTAA
10077368 GTGTC
130 GTGTC
10077373 ATGAATTTAA
Statistics
Matches: 384, Mismatches: 51, Indels: 35
0.82 0.11 0.07
Matches are distributed among these distances:
157 15 0.04
158 28 0.07
159 67 0.17
160 110 0.29
161 111 0.29
162 53 0.14
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (161 bp):
ATGAATTTGAGATATATTTAATAGTGAGGTGTATAAAGTAATATATTAGGTGTATTTAGAATTTC
TCTTTAAAACTTTGACGTATGCAATTACGTAATATAAAACCTTCACTGTTTCACTCGCAATTAAG
TGTCTCAACGTGTTATCTACCCATAATCGAT
Found at i:10077357 original size:320 final size:317
Alignment explanation
Indices: 10076761--10077372 Score: 811
Period size: 320 Copynumber: 1.9 Consensus size: 317
10076751 ATTAAGTGTC
10076761 ATGAATTTAAGATATATAATAGTGGGTGTATAAAGTAATATATTAGTGTATTTAGAATTCTCCTT
1 ATGAATTTAAGATATATAATAGTGGGTGTATAAAGTAATATATTAGTGTATTTAGAATTCTCCTT
* ** * *
10076826 CAAAACTTTAACGTATGCAATTACGTAATATAGAACATTCACTGTTTCACTCGTAATTAAGTGTC
66 CAAAACTTTAACGTATGCAATTACGTAATATAAAACATTCACCATTTCACACG-AATTAAGTATC
* *
10076891 TTCACGTGCCATCTACTCATAATCGATATGAATTTGAGATATATTTAATAGTAGGGTGTATAAAG
130 TTCACGTGCCATCTACCCATAATCGACATGAATTTGAGATATATTTAATAGTAGGGTGTATAAAG
* * *
10076956 TAATATATAAGGTGTATTTAAAATTTCTCTTTGAAACTTTGACGTATGCAATTATGTAACATAAA
195 TAATATATAAGGTGTATTTAAAATTTCTCTTTAAAACTTTGACGTATGCAATTACGTAAAATAAA
** *
10077021 ACCTTCCATTGTTTCACTGACAATTAAATGTCTCAACGTGTTATTCACCCATAGTGGT
260 ACCTTCCACAGTTTCACTCACAATTAAATGTCTCAACGTGTTATTCACCCATAGTGGT
* *
10077079 ATGAATTTGAGATGTATATAATAGTGAGGTGTATTAAGTAATATATTAGCTGTATTTAGAATT-T
1 ATGAATTTAAGA--TATATAATAGTG-GGTGTATAAAGTAATATATTAG-TGTATTTAGAATTCT
* ** * *
10077143 TCTTTGAAACTTTGACGTATGCAATTACGTAATATAAAACCTTCTACCATTTCACAC-AATTAAG
62 CCTTCAAAACTTTAACGTATGCAATTACGTAATATAAAACATTC-ACCATTTCACACGAATTAAG
* ** * *
10077207 TATC-TCAATGTGTTATCTACCCGTAATC-AGCATGAATTTGAGATATATTTGATAGT-GAGGTG
126 TATCTTC-ACGTGCCATCTACCCATAATCGA-CATGAATTTGAGATATATTTAATAGTAG-GGTG
* * * *
10077269 TATAAAGTAATATATTATGTGTATTTAGAATTTCTTTTTAAAACTTTGACGTATGCAATTACGTA
188 TATAAAGTAATATATAAGGTGTATTTAAAATTTCTCTTTAAAACTTTGACGTATGCAATTACGTA
* ** *
10077334 AAATAAAATCTTTTACAGTTTCACTCACAATTAAGTGTC
253 AAATAAAACCTTCCACAGTTTCACTCACAATTAAATGTC
10077373 ATGAATTTAA
Statistics
Matches: 253, Mismatches: 33, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
318 11 0.04
319 4 0.02
320 156 0.62
321 60 0.24
322 22 0.09
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (317 bp):
ATGAATTTAAGATATATAATAGTGGGTGTATAAAGTAATATATTAGTGTATTTAGAATTCTCCTT
CAAAACTTTAACGTATGCAATTACGTAATATAAAACATTCACCATTTCACACGAATTAAGTATCT
TCACGTGCCATCTACCCATAATCGACATGAATTTGAGATATATTTAATAGTAGGGTGTATAAAGT
AATATATAAGGTGTATTTAAAATTTCTCTTTAAAACTTTGACGTATGCAATTACGTAAAATAAAA
CCTTCCACAGTTTCACTCACAATTAAATGTCTCAACGTGTTATTCACCCATAGTGGT
Found at i:10077489 original size:134 final size:135
Alignment explanation
Indices: 10077237--10077506 Score: 391
Period size: 134 Copynumber: 2.0 Consensus size: 135
10077227 CCGTAATCAG
* * *
10077237 CATGAATTTGAGATATATTTGATAGTGAGGTGTATAAAGTAATATATTATGTGTATTTAGAATTT
1 CATGAATTTAAGATATATTTAATAGTGAGGTGTATAAAGTAATATATTAGGTGTATTTAGAATTT
* * * * **
10077302 CTTTTTAAAACTTTGACGTATGCAATTACGTAAAATAAAATCTTTTACAGTTTCACTCACAATTA
66 CTCTTCAAAACTTTAACGTATGCAATTACGTAAAATAAAACCTTCCACAGTTTCACTCACAATTA
10077367 AGTGT
131 AGTGT
10077372 CATGAATTTAAGATATATTTAATAGTG-GGTGTATAAAGTAATATATTAGGTGTATTTAGAA-TT
1 CATGAATTTAAGATATATTTAATAGTGAGGTGTATAAAGTAATATATTAGGTGTATTTAGAATTT
* * * **
10077435 CTCCTTCAAAACTTTAACGTATGCAATTACGTAATATAGAACCTTCCACTGTTTCACTCGTAATT
66 CT-CTTCAAAACTTTAACGTATGCAATTACGTAAAATAAAACCTTCCACAGTTTCACTCACAATT
10077500 AAGTGT
130 AAGTGT
10077506 C
1 C
10077507 TCCACGTGCC
Statistics
Matches: 120, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
133 4 0.03
134 91 0.76
135 25 0.21
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (135 bp):
CATGAATTTAAGATATATTTAATAGTGAGGTGTATAAAGTAATATATTAGGTGTATTTAGAATTT
CTCTTCAAAACTTTAACGTATGCAATTACGTAAAATAAAACCTTCCACAGTTTCACTCACAATTA
AGTGT
Found at i:10077641 original size:161 final size:161
Alignment explanation
Indices: 10077373--10077990 Score: 685
Period size: 161 Copynumber: 3.8 Consensus size: 161
10077363 ATTAAGTGTC
* *
10077373 ATGAATTTAAGATATATTTAATAGTGGGTGTATAAAGTAATATATTAGGTGTATTTAGAA-TTCT
1 ATGAATTTGAGATATATTTAATAGTGGGTGTATAAAGTAATATATTAGGTGTATTTAAAATTTCT
** * * * *
10077437 CCTTCAAAACTTTAACGTATGCAATTACGTAATATAGAACCTTCCACTGTTTCACTCGTAATTAA
66 -CTTTGAAACTTTGACGTATGCAATTACGTAATATAAAACCTTCCACTATTTCACTCGCAATTAA
* * ** * *
10077502 GTGTCTCCACGTGCCATCTACTCATAATCGAT
130 GTGTCTCAACATGTTATCTACCCATAGTCGAT
** *
10077534 ATGAATTTGAGATATATTTAATAGTAGGGTGTATAAAGTAATATACAATGTGTATTTAAAATTTC
1 ATGAATTTGAGATATATTTAATAGT-GGGTGTATAAAGTAATATATTAGGTGTATTTAAAATTTC
* * * *
10077599 TCTTTG-AACTTTGACGTATGCAATTATGTAACATAAAACCTTCCATTATTTCACTGGCAATTAA
65 TCTTTGAAACTTTGACGTATGCAATTACGTAATATAAAACCTTCCACTATTTCACTCGCAATTAA
* * * *
10077663 ATGTCTCAACATATTAT-TCACCCATAGTTGGT
130 GTGTCTCAACATGTTATCT-ACCCATAGTCGAT
* * * *
10077695 ATGAATTTGAGATATATATAATAGTGAGGTGTATTAAGCAATATATTAGGTGTATTTAGAATTT-
1 ATGAATTTGAGATATATTTAATAGTG-GGTGTATAAAGTAATATATTAGGTGTATTTAAAATTTC
* * * * *
10077759 TCTTTTGAAACTTTGACGTATGCAATTACGTGATATAGAACCTTCTACCATTTCA--CACAATTA
65 TC-TTTGAAACTTTGACGTATGCAATTACGTAATATAAAACCTTCCACTATTTCACTCGCAATTA
* * *
10077822 AGTATCTCAATATGTTATCTACCCATAGTC-AGC
129 AGTGTCTCAACATGTTATCTACCCATAGTCGA-T
* *
10077855 ATGAATTTGAGATATATTTGATAGTGGGGTGTATAAAGTAATATATTATGTGTATTTAAAATTTC
1 ATGAATTTGAGATATATTTAATAGT-GGGTGTATAAAGTAATATATTAGGTGTATTTAAAATTTC
* * * * * * *
10077920 TTTTTTGAAACTTTGACATATGCAATTACATAAAATAAAATCTTTCAC-AGTTTCACTCACAATT
65 -TCTTTGAAACTTTGACGTATGCAATTACGTAATATAAAACCTTCCACTA-TTTCACTCGCAATT
10077984 AAGTGTC
128 AAGTGTC
10077991 ATGAATTTAA
Statistics
Matches: 379, Mismatches: 64, Indels: 26
0.81 0.14 0.06
Matches are distributed among these distances:
160 90 0.24
161 197 0.52
162 75 0.20
163 17 0.04
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.38
Consensus pattern (161 bp):
ATGAATTTGAGATATATTTAATAGTGGGTGTATAAAGTAATATATTAGGTGTATTTAAAATTTCT
CTTTGAAACTTTGACGTATGCAATTACGTAATATAAAACCTTCCACTATTTCACTCGCAATTAAG
TGTCTCAACATGTTATCTACCCATAGTCGAT
Found at i:10078097 original size:135 final size:136
Alignment explanation
Indices: 10077854--10078111 Score: 324
Period size: 135 Copynumber: 1.9 Consensus size: 136
10077844 CCATAGTCAG
* * * * *
10077854 CATGAATTTGAGATATATTTGATAGTGGGGTGTATAAAGTAATATATTATGTGTATTTAAAATTT
1 CATGAATTTAAAATATATTTAATAGTGGGGTGTATAAAGAAATATATTAGGTGTATTTAAAATTT
** ** * *
10077919 CTTTTTTGAAACTTTGACATATGCAATTACATAAAATAAAATCTTTCAC-AGTTTCACTCACAAT
66 CTCCTTCAAAACTTTAACATATGCAATTACATAAAATAAAATCTTCCACTA-TTTCACTCACAAT
10077983 TAAGTGT
130 TAAGTGT
* *
10077990 CATGAATTTAAAATATATTTAATAGT-GGGTGTATAAAGAAATGTATTAGGTGTATTTAGAA-TT
1 CATGAATTTAAAATATATTTAATAGTGGGGTGTATAAAGAAATATATTAGGTGTATTTAAAATTT
* * * *
10078053 CTCCTTCAAAACTTTTAACGTATGCAATTACGTAATATAGAATCTTCCACTATTTCACT
66 CTCCTTCAAAAC-TTTAACATATGCAATTACATAAAATAAAATCTTCCACTATTTCACT
10078112 TGTAATTAAA
Statistics
Matches: 103, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
134 10 0.10
135 69 0.67
136 24 0.23
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.40
Consensus pattern (136 bp):
CATGAATTTAAAATATATTTAATAGTGGGGTGTATAAAGAAATATATTAGGTGTATTTAAAATTT
CTCCTTCAAAACTTTAACATATGCAATTACATAAAATAAAATCTTCCACTATTTCACTCACAATT
AAGTGT
Found at i:10078222 original size:76 final size:76
Alignment explanation
Indices: 10078096--10078246 Score: 266
Period size: 76 Copynumber: 2.0 Consensus size: 76
10078086 AATATAGAAT
*
10078096 CTTCCACTATTTCACTTGTAATTAAATGTCTCCACGTGCCATCTACTCATAATCGATATGAATTT
1 CTTCCACTATTTCACTCGTAATTAAATGTCTCCACGTGCCATCTACTCATAATCGATATGAATTT
10078161 GAGATGTATTC
66 GAGATGTATTC
* * *
10078172 CTTCCACTGTTTCACTCGTAATTAAGTGTCTCCACGTGTCATCTACTCATAATCGATATGAATTT
1 CTTCCACTATTTCACTCGTAATTAAATGTCTCCACGTGCCATCTACTCATAATCGATATGAATTT
10078237 GAGATGTATT
66 GAGATGTATT
10078247 TAATAGTAGG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
76 71 1.00
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.38
Consensus pattern (76 bp):
CTTCCACTATTTCACTCGTAATTAAATGTCTCCACGTGCCATCTACTCATAATCGATATGAATTT
GAGATGTATTC
Found at i:10078444 original size:162 final size:160
Alignment explanation
Indices: 10078171--10078686 Score: 599
Period size: 162 Copynumber: 3.2 Consensus size: 160
10078161 GAGATGTATT
** * * * * *
10078171 CCTTCCACTGTTTCACTCGTAATTAAGTGTCTCCACGTGTCATCTACTCATAATCGATATGAATT
1 CCTTCCACTGTTTCACTCACAATTAAATGTCTCAACGTGTTATCTACCCATAATCGGTATGAATT
* *
10078236 TGAGATGTATTTAATAGT-AGGGTATATAAAGTAATATATAAGGTGTATTTAAAATTTCTCTTTG
66 TGAGATGTATTTAATAGTGAGTGTAT-T-AAGTAATATATTAGGTGTATTTAAAATTT-TCTTTG
* *
10078300 AAACTTTGACGTATGCAATTATGTAACATAAAA
128 AAACTTTGACGTATGCAATTACGTAAAATAAAA
* ** * *
10078333 CCTTCCATTGTTTCACTGGCAATTAAATGTCTCAACGTGTTAT-TCACCCATAGTTGGTATGAAT
1 CCTTCCACTGTTTCACTCACAATTAAATGTCTCAACGTGTTATCT-ACCCATAATCGGTATGAAT
* *
10078397 TTGAGATGTATATAATAGTGAGATGTATTAAGTAATATATTAGGTGTATTTAGAATTTTTCTTTG
65 TTGAGATGTATTTAATAGTGAG-TGTATTAAGTAATATATTAGGTGTATTTA-AAATTTTCTTTG
*
10078462 AAACTTTGACGTATGCAATTACGTAATATAGAAA
128 AAACTTTGACGTATGCAATTACGTAAAATA-AAA
* ** * * * * *
10078496 CCTTCTACCATTTCA--CACAATTAAGTATCTCAATGTGTTATCTACCCATAATCAGCATGAATT
1 CCTTCCACTGTTTCACTCACAATTAAATGTCTCAACGTGTTATCTACCCATAATCGGTATGAATT
* * * * *
10078559 TGAGATATATTTGATAGTGAGGTGTATAAAGTAATATATTATGTGTATTTAGAAATTTTTTTTGA
66 TGAGATGTATTTAATAGTGA-GTGTATTAAGTAATATATTAGGTGTATTTA-AAATTTTCTTTGA
*
10078624 AACTTTGACATATGCAATTACGTAAAATAAAA
129 AACTTTGACGTATGCAATTACGTAAAATAAAA
* * *
10078656 TCTTTCACAGTTTCACTCACAATTAAATGTC
1 CCTTCCACTGTTTCACTCACAATTAAATGTC
10078687 ATGAATTTAA
Statistics
Matches: 300, Mismatches: 45, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
160 13 0.04
161 121 0.40
162 140 0.47
163 22 0.07
164 4 0.01
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.38
Consensus pattern (160 bp):
CCTTCCACTGTTTCACTCACAATTAAATGTCTCAACGTGTTATCTACCCATAATCGGTATGAATT
TGAGATGTATTTAATAGTGAGTGTATTAAGTAATATATTAGGTGTATTTAAAATTTTCTTTGAAA
CTTTGACGTATGCAATTACGTAAAATAAAA
Found at i:10078803 original size:134 final size:135
Alignment explanation
Indices: 10078551--10078820 Score: 373
Period size: 134 Copynumber: 2.0 Consensus size: 135
10078541 CCATAATCAG
* * *
10078551 CATGAATTTGAGATATATTTGATAGTGAGGTGTATAAAGTAATATATTATGTGTATTTAGAAATT
1 CATGAATTTAAGATATATTTAATAGTGAGGTGTATAAAGTAATATATTAGGTGTATTTAGAAATT
** ** * * *
10078616 TTTTTTGAAACTTTGACATATGCAATTACGTAAAATAAAATCTTTCACAGTTTCACTCACAATTA
66 TCCTTCAAAACTTTAACATATGCAATTACGTAAAATAAAACCTTCCACAGTTTCACTCACAATTA
10078681 AATGT
131 AATGT
10078686 CATGAATTTAAGATATATTTAATAGTGA-GTGTATAAAGTAATATATTAGGTGTATTTAG-AATT
1 CATGAATTTAAGATATATTTAATAGTGAGGTGTATAAAGTAATATATTAGGTGTATTTAGAAATT
* * * * *
10078749 CTCCTTCAAAACTTTAACGTATGCAATTACGTAATATAGAACCTTCCACTGTTTCACTCATAATT
66 -TCCTTCAAAACTTTAACATATGCAATTACGTAAAATAAAACCTTCCACAGTTTCACTCACAATT
*
10078814 AAGTGT
130 AAATGT
10078820 C
1 C
10078821 TCCACGTGCC
Statistics
Matches: 118, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
133 4 0.03
134 88 0.75
135 26 0.22
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (135 bp):
CATGAATTTAAGATATATTTAATAGTGAGGTGTATAAAGTAATATATTAGGTGTATTTAGAAATT
TCCTTCAAAACTTTAACATATGCAATTACGTAAAATAAAACCTTCCACAGTTTCACTCACAATTA
AATGT
Found at i:10078925 original size:296 final size:294
Alignment explanation
Indices: 10078391--10079544 Score: 1256
Period size: 296 Copynumber: 3.8 Consensus size: 294
10078381 CATAGTTGGT
* * * * *
10078391 ATGAATTTGAGATGTATATAATAGTGAGATGTATTAAGTAATATATTAGGTGTATTTAGAATTTT
1 ATGAATTTAAGATATATTTAATAGTGAGATGTATAAAGTAATATATTAGGTGTATTTAGAATTCT
* * * * *
10078456 TCTTTGAAACTTTGACGTATGCAATTACGTAATATAGAAACCTTCTACCATTTCACACAATTAAG
66 CCTTCGAAACTTTAACGTATGCAATTACGTAATATA-AAACCTTCCACTATTTCACACAATTAAG
* ** *
10078521 TATCTCAATGTGTTATCTACCCATAATC-AGCATGAATTTGAGATATATTTGATAGT-GAGGTGT
130 TATCTCAACGTGCCATCTACCCATAATCGA-CATGAATTTGAGATATATTTAATAGTAG-GGTGT
* *
10078584 ATAAAGTAATATATTATGTGTATTTAGAAATTTTTTTTGAAACTTTGACATATGCAATTACGTAA
193 ATAAAGTAATATATTAGGTGTATTTA-AAATTTTCTTTGAAACTTTGACATATGCAATTACGTAA
*
10078649 AATAAAATCTTTCACAGTTTCACTCACAATTAAATGTC
257 AATAAAATCTTTCATAGTTTCACTCACAATTAAATGTC
10078687 ATGAATTTAAGATATATTTAATAGTGAG-TGTATAAAGTAATATATTAGGTGTATTTAGAATTCT
1 ATGAATTTAAGATATATTTAATAGTGAGATGTATAAAGTAATATATTAGGTGTATTTAGAATTCT
* * * *
10078751 CCTTCAAAACTTTAACGTATGCAATTACGTAATATAGAACCTTCCACTGTTTCACTCATAATTAA
66 CCTTCGAAACTTTAACGTATGCAATTACGTAATATAAAACCTTCCACTATTTCA--CACAATTAA
* * * *
10078816 GTGTCTCCACGTGCCATCTACTCATAATCGATATGAATTTGAGATATATTTAATAGTAGGGTGTA
129 GTATCTCAACGTGCCATCTACCCATAATCGACATGAATTTGAGATATATTTAATAGTAGGGTGTA
** * * *
10078881 TAAAGTAATATACAAGGTGTATTTAAAATTTCTCTTTGAAACTTTGACGTATGCAATTATGTAAC
194 TAAAGTAATATATTAGGTGTATTTAAAATTT-TCTTTGAAACTTTGACATATGCAATTACGTAAA
* * * **
10078946 ATAAAACCTTCCATTGTTTCACTGGCAATTAAATGTCTC
258 ATAAAATCTTTCATAGTTTCACTCACAATTAAATG--TC
* * *
10078985 AACGTATTATTCACCCATAGTTGGTATGAATTTGAGATGTATATAATAGTGAGATGTATTAAGTA
1 -ATG-A--ATT------TA------A-G-A--T-ATAT-T---TAATAGTGAGATGTATAAAGTA
* * * * *
10079050 ATATATTAGCTGTATTTAGAATTTTTCTTTGAAACTTTGACGTATGCAATTACGTAATATAAAAC
41 ATATATTAGGTGTATTTAGAATTCTCCTTCGAAACTTTAACGTATGCAATTACGTAATATAAAAC
* * * * ** *
10079115 CTTCTACCA-TTCACACAATTGAGTATCTCAATGTGTTATCTACCCATAATCAACATGAATTTGA
106 CTTCCACTATTTCACACAATTAAGTATCTCAACGTGCCATCTACCCATAATCGACATGAATTTGA
* * * * *
10079179 GATATATTTGATAGTGGGGTGTATAAAGTAATATATTATGTGTATTTAGAATTTCTTTTTGAAAC
171 GATATATTTAATAGTAGGGTGTATAAAGTAATATATTAGGTGTATTTAAAATTT-TCTTTGAAAC
* *
10079244 TTTGACATATGCAATTACATAAAATAAAATCTTTCATAGTTTCACTCACAATTAAGTGTC
235 TTTGACATATGCAATTACGTAAAATAAAATCTTTCATAGTTTCACTCACAATTAAATGTC
* * * *
10079304 ATGAATTTAAGATATATTTAATAGTG-GGTGTATAAACTAATGTATTAGATGTATTTAGAATTCT
1 ATGAATTTAAGATATATTTAATAGTGAGATGTATAAAGTAATATATTAGGTGTATTTAGAATTCT
* *
10079368 CTTTCGAAACTTTAACGTATGCAATTACGTAATATAAAACCTTCCACTATTTCACTCATAATTAA
66 CCTTCGAAACTTTAACGTATGCAATTACGTAATATAAAACCTTCCACTATTTCA--CACAATTAA
* * * * * * * *
10079433 GTGTCTCCACGTGCCATCTACTCATAATAGATATGAATTTGAGATGTATTTAATAATAAGGTGTA
129 GTATCTCAACGTGCCATCTACCCATAATCGACATGAATTTGAGATATATTTAATAGTAGGGTGTA
* * * *
10079498 TAAAATAATATATGAGGTGTATTTATAATTTTCTTTCAAAACTTTGA
194 TAAAGTAATATATTAGGTGTATTTAAAATTTTCTTT-GAAACTTTGA
10079545 GGTGTATAAT
Statistics
Matches: 710, Mismatches: 111, Indels: 74
0.79 0.12 0.08
Matches are distributed among these distances:
293 75 0.11
294 26 0.04
295 76 0.11
296 260 0.37
297 3 0.00
298 5 0.01
299 3 0.00
300 1 0.00
301 1 0.00
302 4 0.01
303 1 0.00
308 2 0.00
309 2 0.00
314 1 0.00
315 4 0.01
316 1 0.00
317 1 0.00
318 3 0.00
319 5 0.01
320 1 0.00
321 147 0.21
323 14 0.02
324 74 0.10
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.38
Consensus pattern (294 bp):
ATGAATTTAAGATATATTTAATAGTGAGATGTATAAAGTAATATATTAGGTGTATTTAGAATTCT
CCTTCGAAACTTTAACGTATGCAATTACGTAATATAAAACCTTCCACTATTTCACACAATTAAGT
ATCTCAACGTGCCATCTACCCATAATCGACATGAATTTGAGATATATTTAATAGTAGGGTGTATA
AAGTAATATATTAGGTGTATTTAAAATTTTCTTTGAAACTTTGACATATGCAATTACGTAAAATA
AAATCTTTCATAGTTTCACTCACAATTAAATGTC
Found at i:10078956 original size:162 final size:161
Alignment explanation
Indices: 10078687--10079303 Score: 724
Period size: 162 Copynumber: 3.8 Consensus size: 161
10078677 ATTAAATGTC
* *
10078687 ATGAATTTAAGATATATTTAATAGTGAGTGTATAAAGTAATATATTAGGTGTATTTAGAA-TTCT
1 ATGAATTTGAGATATATTTAATAGTGGGTGTATAAAGTAATATATTAGGTGTATTTAGAATTTCT
** * * *
10078751 CCTTCAAAACTTTAACGTATGCAATTACGTAATATAGAACCTTCCACTGTTTCACTCATAATTAA
66 -CTTTGAAACTTTGACGTATGCAATTACGTAATATAAAACCTTCCACTGTTTCACTCACAATTAA
* ** *
10078816 GTGTCTCCACGTGCCATCTACTCATAATCGAT
130 GTGTCTCAACGTGTTATCTACCCATAATCGAT
** *
10078848 ATGAATTTGAGATATATTTAATAGTAGGGTGTATAAAGTAATATACAAGGTGTATTTAAAATTTC
1 ATGAATTTGAGATATATTTAATAGT-GGGTGTATAAAGTAATATATTAGGTGTATTTAGAATTTC
* * * **
10078913 TCTTTGAAACTTTGACGTATGCAATTATGTAACATAAAACCTTCCATTGTTTCACTGGCAATTAA
65 TCTTTGAAACTTTGACGTATGCAATTACGTAATATAAAACCTTCCACTGTTTCACTCACAATTAA
* * * * *
10078978 ATGTCTCAACGTATTAT-TCACCCATAGTTGGT
130 GTGTCTCAACGTGTTATCT-ACCCATAATCGAT
* * * * * *
10079010 ATGAATTTGAGATGTATATAATAGTGAGATGTATTAAGTAATATATTAGCTGTATTTAGAATTTT
1 ATGAATTTGAGATATATTTAATAGTG-GGTGTATAAAGTAATATATTAGGTGTATTTAGAATTTC
* ** *
10079075 TCTTTGAAACTTTGACGTATGCAATTACGTAATATAAAACCTTCTAC-CATTCA--CACAATTGA
65 TCTTTGAAACTTTGACGTATGCAATTACGTAATATAAAACCTTCCACTGTTTCACTCACAATTAA
* * * *
10079137 GTATCTCAATGTGTTATCTACCCATAATCAAC
130 GTGTCTCAACGTGTTATCTACCCATAATCGAT
* *
10079169 ATGAATTTGAGATATATTTGATAGTGGGGTGTATAAAGTAATATATTATGTGTATTTAGAATTTC
1 ATGAATTTGAGATATATTTAATAGT-GGGTGTATAAAGTAATATATTAGGTGTATTTAGAATTTC
* * * * * *
10079234 TTTTTGAAACTTTGACATATGCAATTACATAAAATAAAATCTTTCA-TAGTTTCACTCACAATTA
65 TCTTTGAAACTTTGACGTATGCAATTACGTAATATAAAACCTTCCACT-GTTTCACTCACAATTA
10079298 AGTGTC
129 AGTGTC
10079304 ATGAATTTAA
Statistics
Matches: 376, Mismatches: 70, Indels: 19
0.81 0.15 0.04
Matches are distributed among these distances:
159 121 0.32
160 6 0.02
161 30 0.08
162 215 0.57
163 4 0.01
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38
Consensus pattern (161 bp):
ATGAATTTGAGATATATTTAATAGTGGGTGTATAAAGTAATATATTAGGTGTATTTAGAATTTCT
CTTTGAAACTTTGACGTATGCAATTACGTAATATAAAACCTTCCACTGTTTCACTCACAATTAAG
TGTCTCAACGTGTTATCTACCCATAATCGAT
Found at i:10079421 original size:134 final size:135
Alignment explanation
Indices: 10079168--10079437 Score: 377
Period size: 134 Copynumber: 2.0 Consensus size: 135
10079158 CCATAATCAA
* * *
10079168 CATGAATTTGAGATATATTTGATAGTGGGGTGTATAAAGTAATATATTATGTGTATTTAGAATTT
1 CATGAATTTAAGATATATTTAATAGTGGGGTGTATAAACTAATATATTATGTGTATTTAGAATTT
* * * *
10079233 CTTTTTGAAACTTTGACATATGCAATTACATAAAATAAAATCTTTCATAGTTTCACTCACAATTA
66 CTTTTCGAAACTTTAACATATGCAATTACATAAAATAAAACCTTCCATAGTTTCACTCACAATTA
10079298 AGTGT
131 AGTGT
*
10079303 CATGAATTTAAGATATATTTAATAGT-GGGTGTATAAACTAATGTATTA-GATGTATTTAGAA-T
1 CATGAATTTAAGATATATTTAATAGTGGGGTGTATAAACTAATATATTATG-TGTATTTAGAATT
* * * *
10079365 TCTCTTTCGAAACTTTAACGTATGCAATTACGTAATATAAAACCTTCCACTA-TTTCACTCATAA
65 TCT-TTTCGAAACTTTAACATATGCAATTACATAAAATAAAACCTTCCA-TAGTTTCACTCACAA
10079429 TTAAGTGT
128 TTAAGTGT
10079437 C
1 C
10079438 TCCACGTGCC
Statistics
Matches: 120, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
133 5 0.04
134 89 0.74
135 26 0.22
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.40
Consensus pattern (135 bp):
CATGAATTTAAGATATATTTAATAGTGGGGTGTATAAACTAATATATTATGTGTATTTAGAATTT
CTTTTCGAAACTTTAACATATGCAATTACATAAAATAAAACCTTCCATAGTTTCACTCACAATTA
AGTGT
Found at i:10079447 original size:617 final size:618
Alignment explanation
Indices: 10075535--10079730 Score: 5503
Period size: 617 Copynumber: 6.6 Consensus size: 618
10075525 TAATAAGGTA
* * * ** * * *
10075535 TATAAAGTAATATATGAAGTGTATTTAG-ATTCTTCTTTGAAACTTTGACGTATGTAATTACATA
1 TATAAAGTAATATATTAGGTGTATTTAGAATTCTCCTTCAAAACTTTAACGTATGCAATTACGTA
* ** * * *** * * * *
10075599 AAATAGAATATTCTATTGTTTCACTTACAATTAAGTGTCTCTACGCGCTA-CATA-TCCATAGTC
66 ATATAGAACCTTCCACTGTTTCACTCGTAATTAAGTGTCTCCACGTGCCATC-TACT-CATAATC
* *
10075662 -ATTATGAATTTGAGATGTATTTAATAATATGGTGTATAAAGTAATATATAAGGTGTATTTAAAA
129 GA-TATGAATTTGAGATGTATTTAATAGTAGGGTGTATAAAGTAATATATAAGGTGTATTTAAAA
*
10075726 TTTCTCTTTGAAACTTTGACGTATGCAATTATGTAACATAAAACCTTCCACTGTTTCACTGGCAA
193 TTTCTCTTTGAAACTTTGACGTATGCAATTATGTAACATAAAACCTTCCATTGTTTCACTGGCAA
*
10075791 TTAAATGTCTCAACGTGTTATTCACCCATAGTTGGTATGAATTTGAAATGTATATAATAGTGAGG
258 TTAAATGTCTCAACGTGTTATTCACCCATAGTTGGTATGAATTTGAGATGTATATAATAGTGA--
*
10075856 TGTATTAAGTAATATATTAGGTGTATTAAGTAATATATTGGTGTATTTAGAATTTTTCTTTGAAA
321 -G-A-T--GT-AT-TA--A---G---TAA-T-ATAT-TAGGTGTATTTAGAATTTTTCTTTGAAA
*
10075921 CTTTGACGTATGCAATTACGTAATATAGAACCTTCTACCATTTCACACAATTAAGTATCTCAATG
368 CTTTGACGTATGCAATTACGTAATATAAAACCTTCTACCATTTCACACAATTAAGTATCTCAATG
* *
10075986 TGTTATCTACCCATAGTCAGCATGAATTTGAGATATATTTGATAGTGAGGTGTATAAAATAATAT
433 TGTTATCTACCCATAATCAGCATGAATTTGAGATATATTTGATAGTGAGGTGTATAAAGTAATAT
*
10076051 ATTATGTGTATTTA-AATTTTTTTTTTTGAAACTTTGACATATGCAATTACGT-AAATAAAATCT
498 ATTATGTGTATTTAGAA--TTTCTTTTTGAAACTTTGACATATGCAATTACGTAAAATAAAATCT
10076114 TTCACAGTTTCACTCACAATTAAGTGTCATGAATTTAAGATATATTTAATAGTGGGTG
561 TTCACAGTTTCACTCACAATTAAGTGTCATGAATTTAAGATATATTTAATAGTGGGTG
* * *
10076172 TATAAAGTAATGTAGTAGGTGTATTTAGAATTCTCC-TCTGAAACTTTAACGTATGCAATTACGT
1 TATAAAGTAATATATTAGGTGTATTTAGAATTCTCCTTC-AAAACTTTAACGTATGCAATTACGT
* * *
10076236 AATATAGAACCTTCCATTATTTCACTCGTAATTAAGTGTCTCCACGTGCCATCTACTCATAATTG
65 AATATAGAACCTTCCACTGTTTCACTCGTAATTAAGTGTCTCCACGTGCCATCTACTCATAATCG
10076301 ATATGAATTTGAGATGTATTTAATAGTAGGGTGTATAAAGTAATATATAAGGTGTATTTAAAATT
130 ATATGAATTTGAGATGTATTTAATAGTAGGGTGTATAAAGTAATATATAAGGTGTATTTAAAATT
*
10076366 TCTCTTTGAAACTTTGACGTATGCAATTATGTAACATAAAACCTTCCACTGTTTCACTGGCAATT
195 TCTCTTTGAAACTTTGACGTATGCAATTATGTAACATAAAACCTTCCATTGTTTCACTGGCAATT
* * *
10076431 AAATGTCTCAACGTGTTGTTCACCCATAGTTGGTATGAATTTGAGATATATATAATAGTGAGGTG
260 AAATGTCTCAACGTGTTATTCACCCATAGTTGGTATGAATTTGAGATGTATATAATAGTGAGATG
*
10076496 TATTAAGTAATATATTAGGTGTATTTATAATTTTTCTTTGAAACTTTGACGTATGCAATTACGTA
325 TATTAAGTAATATATTAGGTGTATTTAGAATTTTTCTTTGAAACTTTGACGTATGCAATTACGTA
* * * *
10076561 ATATAGAACCTTATACTATTTCACACAATTAAGTATCTCAATGTGTTATCTACCCATAGTCAGCA
390 ATATAAAACCTTCTACCATTTCACACAATTAAGTATCTCAATGTGTTATCTACCCATAATCAGCA
10076626 TGAATTTGAGATATATATTGATAGTGAGGTGTATAAAGTAATATATTATGTGTATTTAGAATTTC
455 TGAATTTGAGATATAT-TTGATAGTGAGGTGTATAAAGTAATATATTATGTGTATTTAGAATTTC
* *
10076691 TTTTTGAAACTTTGACATATGTAATTACGTAAAATAAAATCTTTCACAATTTCACTCACAATTAA
519 TTTTTGAAACTTTGACATATGCAATTACGTAAAATAAAATCTTTCACAGTTTCACTCACAATTAA
10076756 GTGTCATGAATTTAAGATATA--TAATAGTGGGTG
584 GTGTCATGAATTTAAGATATATTTAATAGTGGGTG
10076789 TATAAAGTAATATATTA-GTGTATTTAGAATTCTCCTTCAAAACTTTAACGTATGCAATTACGTA
1 TATAAAGTAATATATTAGGTGTATTTAGAATTCTCCTTCAAAACTTTAACGTATGCAATTACGTA
* *
10076853 ATATAGAACATT-CACTGTTTCACTCGTAATTAAGTGTCTTCACGTGCCATCTACTCATAATCGA
66 ATATAGAACCTTCCACTGTTTCACTCGTAATTAAGTGTCTCCACGTGCCATCTACTCATAATCGA
*
10076917 TATGAATTTGAGATATATTTAATAGTAGGGTGTATAAAGTAATATATAAGGTGTATTTAAAATTT
131 TATGAATTTGAGATGTATTTAATAGTAGGGTGTATAAAGTAATATATAAGGTGTATTTAAAATTT
*
10076982 CTCTTTGAAACTTTGACGTATGCAATTATGTAACATAAAACCTTCCATTGTTTCACTGACAATTA
196 CTCTTTGAAACTTTGACGTATGCAATTATGTAACATAAAACCTTCCATTGTTTCACTGGCAATTA
*
10077047 AATGTCTCAACGTGTTATTCACCCATAG-TGGTATGAATTTGAGATGTATATAATAGTGAGGTGT
261 AATGTCTCAACGTGTTATTCACCCATAGTTGGTATGAATTTGAGATGTATATAATAGTGAGATGT
*
10077111 ATTAAGTAATATATTAGCTGTATTTAGAA-TTTTCTTTGAAACTTTGACGTATGCAATTACGTAA
326 ATTAAGTAATATATTAGGTGTATTTAGAATTTTTCTTTGAAACTTTGACGTATGCAATTACGTAA
*
10077175 TATAAAACCTTCTACCATTTCACACAATTAAGTATCTCAATGTGTTATCTACCCGTAATCAGCAT
391 TATAAAACCTTCTACCATTTCACACAATTAAGTATCTCAATGTGTTATCTACCCATAATCAGCAT
10077240 GAATTTGAGATATATTTGATAGTGAGGTGTATAAAGTAATATATTATGTGTATTTAGAATTTCTT
456 GAATTTGAGATATATTTGATAGTGAGGTGTATAAAGTAATATATTATGTGTATTTAGAATTTCTT
* * *
10077305 TTTAAAACTTTGACGTATGCAATTACGTAAAATAAAATCTTTTACAGTTTCACTCACAATTAAGT
521 TTTGAAACTTTGACATATGCAATTACGTAAAATAAAATCTTTCACAGTTTCACTCACAATTAAGT
10077370 GTCATGAATTTAAGATATATTTAATAGTGGGTG
586 GTCATGAATTTAAGATATATTTAATAGTGGGTG
10077403 TATAAAGTAATATATTAGGTGTATTTAGAATTCTCCTTCAAAACTTTAACGTATGCAATTACGTA
1 TATAAAGTAATATATTAGGTGTATTTAGAATTCTCCTTCAAAACTTTAACGTATGCAATTACGTA
10077468 ATATAGAACCTTCCACTGTTTCACTCGTAATTAAGTGTCTCCACGTGCCATCTACTCATAATCGA
66 ATATAGAACCTTCCACTGTTTCACTCGTAATTAAGTGTCTCCACGTGCCATCTACTCATAATCGA
* * *
10077533 TATGAATTTGAGATATATTTAATAGTAGGGTGTATAAAGTAATATACAATGTGTATTTAAAATTT
131 TATGAATTTGAGATGTATTTAATAGTAGGGTGTATAAAGTAATATATAAGGTGTATTTAAAATTT
*
10077598 CTCTTTG-AACTTTGACGTATGCAATTATGTAACATAAAACCTTCCATTATTTCACTGGCAATTA
196 CTCTTTGAAACTTTGACGTATGCAATTATGTAACATAAAACCTTCCATTGTTTCACTGGCAATTA
* * * *
10077662 AATGTCTCAACATATTATTCACCCATAGTTGGTATGAATTTGAGATATATATAATAGTGAGGTGT
261 AATGTCTCAACGTGTTATTCACCCATAGTTGGTATGAATTTGAGATGTATATAATAGTGAGATGT
* *
10077727 ATTAAGCAATATATTAGGTGTATTTAGAA-TTTTCTTTTGAAACTTTGACGTATGCAATTACGTG
326 ATTAAGTAATATATTAGGTGTATTTAGAATTTTTC-TTTGAAACTTTGACGTATGCAATTACGTA
* * *
10077791 ATATAGAACCTTCTACCATTTCACACAATTAAGTATCTCAATATGTTATCTACCCATAGTCAGCA
390 ATATAAAACCTTCTACCATTTCACACAATTAAGTATCTCAATGTGTTATCTACCCATAATCAGCA
* *
10077856 TGAATTTGAGATATATTTGATAGTGGGGTGTATAAAGTAATATATTATGTGTATTTAAAATTTCT
455 TGAATTTGAGATATATTTGATAGTGAGGTGTATAAAGTAATATATTATGTGTATTTAGAATTTC-
*
10077921 TTTTTGAAACTTTGACATATGCAATTACATAAAATAAAATCTTTCACAGTTTCACTCACAATTAA
519 TTTTTGAAACTTTGACATATGCAATTACGTAAAATAAAATCTTTCACAGTTTCACTCACAATTAA
*
10077986 GTGTCATGAATTTAAAATATATTTAATAGTGGGTG
584 GTGTCATGAATTTAAGATATATTTAATAGTGGGTG
* *
10078021 TATAAAGAAATGTATTAGGTGTATTTAGAATTCTCCTTCAAAACTTTTAACGTATGCAATTACGT
1 TATAAAGTAATATATTAGGTGTATTTAGAATTCTCCTTCAAAAC-TTTAACGTATGCAATTACGT
* * * *
10078086 AATATAGAATCTTCCACTATTTCACTTGTAATTAAATGTCTCCACGTGCCATCTACTCATAATCG
65 AATATAGAACCTTCCACTGTTTCACTCGTAATTAAGTGTCTCCACGTGCCATCTACTCATAATCG
** *** ** * * * * * * *
10078151 ATATGAATTTGAGATGTA-TTCCTTCCACTGTTTCACTCGTAATTAAGTGTCTCCACGTGTCATC
130 ATATGAATTTGAGATGTATTTAATAGTAGGGTGT-A-T--AAAGTAA-TATAT-AAGGTGT-AT-
* *** * * *
10078215 TACTCATAATCGATATGAATTTGAGATGTATTTAATAGTAGGGTATATAAAGTAATATATAAGGT
187 T--T-A-AA---ATTTCTCTTTGA-A---ACTT--T-G-A-CG--TAT---GCAAT-TAT---GT
* ** * * * * * * *
10078280 GTATTTAAAA-TTTCTCTTTGAAACTTTGACGTATGCAATT--ATGTAACATAAAACCT-TCCAT
227 -AACATAAAACCTTC-CATTG----TTTCAC-T-GGCAATTAAATGT--C-T-CAACGTGT-TAT
**** * **** * * * *
10078341 TGTTTCACTGGCAATTAAATGTCTCAACGTGTTATTCACCCATAGTTGGTATGAAT-TTGAGATG
279 TCACCCA-TAGTTGGT--ATG----AA-----T-TTGA--GAT-G-T-ATAT-AATAGTGAGATG
10078405 TATATAATAGTGAGATGTATTAAGTAATATATTAGGTGTATTTAGAATTTTTCTTTGAAACTTTG
325 ----T-AT--T-A-A-G--T-----AATATATTAGGTGTATTTAGAATTTTTCTTTGAAACTTTG
10078470 ACGTATGCAATTACGTAATATAGAAACCTTCTACCATTTCACACAATTAAGTATCTCAATGTGTT
373 ACGTATGCAATTACGTAATATA-AAACCTTCTACCATTTCACACAATTAAGTATCTCAATGTGTT
10078535 ATCTACCCATAATCAGCATGAATTTGAGATATATTTGATAGTGAGGTGTATAAAGTAATATATTA
437 ATCTACCCATAATCAGCATGAATTTGAGATATATTTGATAGTGAGGTGTATAAAGTAATATATTA
10078600 TGTGTATTTAGAAATTT-TTTTTGAAACTTTGACATATGCAATTACGTAAAATAAAATCTTTCAC
502 TGTGTATTTAG-AATTTCTTTTTGAAACTTTGACATATGCAATTACGTAAAATAAAATCTTTCAC
* *
10078664 AGTTTCACTCACAATTAAATGTCATGAATTTAAGATATATTTAATAGTGAGTG
566 AGTTTCACTCACAATTAAGTGTCATGAATTTAAGATATATTTAATAGTGGGTG
10078717 TATAAAGTAATATATTAGGTGTATTTAGAATTCTCCTTCAAAACTTTAACGTATGCAATTACGTA
1 TATAAAGTAATATATTAGGTGTATTTAGAATTCTCCTTCAAAACTTTAACGTATGCAATTACGTA
*
10078782 ATATAGAACCTTCCACTGTTTCACTCATAATTAAGTGTCTCCACGTGCCATCTACTCATAATCGA
66 ATATAGAACCTTCCACTGTTTCACTCGTAATTAAGTGTCTCCACGTGCCATCTACTCATAATCGA
* *
10078847 TATGAATTTGAGATATATTTAATAGTAGGGTGTATAAAGTAATATACAAGGTGTATTTAAAATTT
131 TATGAATTTGAGATGTATTTAATAGTAGGGTGTATAAAGTAATATATAAGGTGTATTTAAAATTT
10078912 CTCTTTGAAACTTTGACGTATGCAATTATGTAACATAAAACCTTCCATTGTTTCACTGGCAATTA
196 CTCTTTGAAACTTTGACGTATGCAATTATGTAACATAAAACCTTCCATTGTTTCACTGGCAATTA
*
10078977 AATGTCTCAACGTATTATTCACCCATAGTTGGTATGAATTTGAGATGTATATAATAGTGAGATGT
261 AATGTCTCAACGTGTTATTCACCCATAGTTGGTATGAATTTGAGATGTATATAATAGTGAGATGT
*
10079042 ATTAAGTAATATATTAGCTGTATTTAGAATTTTTCTTTGAAACTTTGACGTATGCAATTACGTAA
326 ATTAAGTAATATATTAGGTGTATTTAGAATTTTTCTTTGAAACTTTGACGTATGCAATTACGTAA
* *
10079107 TATAAAACCTTCTACCA-TTCACACAATTGAGTATCTCAATGTGTTATCTACCCATAATCAACAT
391 TATAAAACCTTCTACCATTTCACACAATTAAGTATCTCAATGTGTTATCTACCCATAATCAGCAT
*
10079171 GAATTTGAGATATATTTGATAGTGGGGTGTATAAAGTAATATATTATGTGTATTTAGAATTTCTT
456 GAATTTGAGATATATTTGATAGTGAGGTGTATAAAGTAATATATTATGTGTATTTAGAATTTCTT
* *
10079236 TTTGAAACTTTGACATATGCAATTACATAAAATAAAATCTTTCATAGTTTCACTCACAATTAAGT
521 TTTGAAACTTTGACATATGCAATTACGTAAAATAAAATCTTTCACAGTTTCACTCACAATTAAGT
10079301 GTCATGAATTTAAGATATATTTAATAGTGGGTG
586 GTCATGAATTTAAGATATATTTAATAGTGGGTG
* * * * *
10079334 TATAAACTAATGTATTAGATGTATTTAGAATTCTCTTTCGAAACTTTAACGTATGCAATTACGTA
1 TATAAAGTAATATATTAGGTGTATTTAGAATTCTCCTTCAAAACTTTAACGTATGCAATTACGTA
* * * *
10079399 ATATAAAACCTTCCACTATTTCACTCATAATTAAGTGTCTCCACGTGCCATCTACTCATAATAGA
66 ATATAGAACCTTCCACTGTTTCACTCGTAATTAAGTGTCTCCACGTGCCATCTACTCATAATCGA
* * * * *
10079464 TATGAATTTGAGATGTATTTAATAATAAGGTGTATAAAATAATATATGAGGTGTATTTATAATTT
131 TATGAATTTGAGATGTATTTAATAGTAGGGTGTATAAAGTAATATATAAGGTGTATTTAAAATTT
* * * ** * * ** * * *
10079529 -TCTTTCAAAACTTTGAGGTGTATAATTATGTAAAATAAAACTTTTTACTGTTTCACTCGTAATT
196 CTCTTT-GAAACTTTGACGTATGCAATTATGTAACATAAAACCTTCCATTGTTTCACTGGCAATT
* * * * * * *** *
10079593 AAGTATCTCTACATGCTA-TCGAGCCAT-GTTCAACATGAATTTGAGATGTATTTAATAGTGA-A
260 AAATGTCTCAACGTGTTATTC-ACCCATAGTT-GGTATGAATTTGAGATGTATATAATAGTGAGA
* * ** * * * * * *
10079655 GTGTATAAAGTAATACATTATATATATTTAAAATTTTTCTTTAAAATTTTGACGTTTGTAATTAC
323 -TGTATTAAGTAATATATTAGGTGTATTTAGAATTTTTCTTTGAAACTTTGACGTATGCAATTAC
*
10079720 GTAAAATAAAA
387 GTAATATAAAA
10079731 TTTTTTATTA
Statistics
Matches: 3185, Mismatches: 260, Indels: 248
0.86 0.07 0.07
Matches are distributed among these distances:
612 129 0.04
613 110 0.03
614 91 0.03
615 341 0.11
616 258 0.08
617 710 0.22
618 316 0.10
619 258 0.08
620 4 0.00
621 3 0.00
622 5 0.00
623 2 0.00
624 7 0.00
625 2 0.00
626 2 0.00
627 2 0.00
628 2 0.00
629 4 0.00
630 4 0.00
631 4 0.00
632 1 0.00
633 8 0.00
635 5 0.00
636 10 0.00
637 26 0.01
638 264 0.08
639 5 0.00
640 1 0.00
641 4 0.00
642 2 0.00
643 1 0.00
645 3 0.00
647 2 0.00
648 4 0.00
649 3 0.00
651 3 0.00
652 5 0.00
653 12 0.00
654 9 0.00
655 2 0.00
656 7 0.00
657 10 0.00
658 10 0.00
659 7 0.00
660 2 0.00
661 9 0.00
662 13 0.00
663 5 0.00
664 3 0.00
666 3 0.00
667 4 0.00
668 2 0.00
670 3 0.00
672 1 0.00
673 2 0.00
674 4 0.00
675 1 0.00
676 2 0.00
677 3 0.00
678 1 0.00
679 9 0.00
680 4 0.00
681 8 0.00
683 1 0.00
684 4 0.00
685 1 0.00
686 2 0.00
687 1 0.00
688 2 0.00
689 3 0.00
690 5 0.00
691 2 0.00
692 5 0.00
694 1 0.00
695 98 0.03
696 200 0.06
697 118 0.04
698 5 0.00
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (618 bp):
TATAAAGTAATATATTAGGTGTATTTAGAATTCTCCTTCAAAACTTTAACGTATGCAATTACGTA
ATATAGAACCTTCCACTGTTTCACTCGTAATTAAGTGTCTCCACGTGCCATCTACTCATAATCGA
TATGAATTTGAGATGTATTTAATAGTAGGGTGTATAAAGTAATATATAAGGTGTATTTAAAATTT
CTCTTTGAAACTTTGACGTATGCAATTATGTAACATAAAACCTTCCATTGTTTCACTGGCAATTA
AATGTCTCAACGTGTTATTCACCCATAGTTGGTATGAATTTGAGATGTATATAATAGTGAGATGT
ATTAAGTAATATATTAGGTGTATTTAGAATTTTTCTTTGAAACTTTGACGTATGCAATTACGTAA
TATAAAACCTTCTACCATTTCACACAATTAAGTATCTCAATGTGTTATCTACCCATAATCAGCAT
GAATTTGAGATATATTTGATAGTGAGGTGTATAAAGTAATATATTATGTGTATTTAGAATTTCTT
TTTGAAACTTTGACATATGCAATTACGTAAAATAAAATCTTTCACAGTTTCACTCACAATTAAGT
GTCATGAATTTAAGATATATTTAATAGTGGGTG
Found at i:10079470 original size:455 final size:458
Alignment explanation
Indices: 10078848--10079731 Score: 1062
Period size: 455 Copynumber: 1.9 Consensus size: 458
10078838 CATAATCGAT
* * *
10078848 ATGAATTTGAGATATATTTAATAGTAGGGTGTATAAAGTAATATACAAGGTGTATTTAAAATTTC
1 ATGAATTTAAGATATATTTAATAGTAGGGTGTATAAACTAATATACAAGATGTATTTAAAATTTC
* * * * **
10078913 TCTTTGAAACTTTGACGTATGCAATTATGTAACATAAAACCTTCCATTGTTTCACTGGCAATTAA
66 TCTTTGAAACTTTAACGTATGCAATTACGTAACATAAAACCTTCCACTATTTCACTCACAATTAA
** * * * * *
10078978 ATGTCTCAACGTATTATTCACCCATAGTTGGTATGAATTTGAGATGTATATAATAGTGAGATGTA
131 ATGTCTCAACGTACCATTCACCCATAATAGATATGAATTTGAGATGTATATAATAATAAGATGTA
* * * * *
10079043 TTAAGTAATATATTAGCTGTATTTAGAATTTTTCTTT-GAAACTTTGACGTATGCAATTACGTAA
196 TAAAATAATATATGAGCTGTATTTAGAA-TTTTCTTTCAAAACTTTGACGTATACAATTACGTAA
* * ** * *
10079107 TATAAAACCTTCTAC-CATTCACAC-AATTGAGTATCTCAATGTGTTATCTACCCATAATCAACA
260 AATAAAACCTTCTACTCATTCACACGAATTAAGTATCTCAACATGCTATCGACCCATAATCAACA
* ** * * * *
10079170 TGAATTTGAGATATATTTGATAGTGGGGTGTATAAAGTAATATATTATGTGTATTTAGAATTTCT
325 TGAATTTGAGATATATTTAATAGTGAAGTGTATAAAGTAATACATTATATATATTTAAAATTT-T
*
10079235 T-TTTGAAACTTTGACATATGCAATTACATAAAATAAAATCTTTCATAGTTTCACTCACAATTAA
389 TCTTTAAAACTTTGACATATGCAATTACATAAAATAAAATCTTTCATAGTTTCACTCACAATTAA
10079299 GTGTC
454 GTGTC
* ** *
10079304 ATGAATTTAAGATATATTTAATAGT-GGGTGTATAAACTAATGTATTAGATGTATTTAGAA-TTC
1 ATGAATTTAAGATATATTTAATAGTAGGGTGTATAAACTAATATACAAGATGTATTTAAAATTTC
* *
10079367 TCTTTCGAAACTTTAACGTATGCAATTACGTAATATAAAACCTTCCACTATTTCACTCATAATTA
66 TCTTT-GAAACTTTAACGTATGCAATTACGTAACATAAAACCTTCCACTATTTCACTCACAATTA
* * * * * *
10079432 AGTGTCTCCACGTGCCA-TCTACTCATAATAGATATGAATTTGAGATGTATTTAATAATAAGGTG
130 AATGTCTCAACGTACCATTC-ACCCATAATAGATATGAATTTGAGATGTATATAATAATAAGATG
* * * * * *
10079496 TATAAAATAATATATGAGGTGTATTTATAATTTTCTTTCAAAACTTTGAGGTGTATAATTATGTA
194 TATAAAATAATATATGAGCTGTATTTAGAATTTTCTTTCAAAACTTTGACGTATACAATTACGTA
* * ** * * * **
10079561 AAATAAAACTTTTTACTGTTTCACTCGTAATTAAGTATCTCTACATGCTATCGAGCCATGTTCAA
259 AAATAAAACCTTCTACTCATTCACACG-AATTAAGTATCTCAACATGCTATCGACCCATAATCAA
*
10079626 CATGAATTTGAGATGTATTTAATAGTGAAGTGTATAAAGTAATACATTATATATATTTAAAATTT
323 CATGAATTTGAGATATATTTAATAGTGAAGTGTATAAAGTAATACATTATATATATTTAAAATTT
* * * * *
10079691 TTCTTTAAAATTTTGACGTTTGTAATTACGTAAAATAAAAT
388 TTCTTTAAAACTTTGACATATGCAATTACATAAAATAAAAT
10079732 TTTTTATTAT
Statistics
Matches: 353, Mismatches: 68, Indels: 12
0.82 0.16 0.03
Matches are distributed among these distances:
454 18 0.05
455 186 0.53
456 30 0.08
457 2 0.01
458 117 0.33
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (458 bp):
ATGAATTTAAGATATATTTAATAGTAGGGTGTATAAACTAATATACAAGATGTATTTAAAATTTC
TCTTTGAAACTTTAACGTATGCAATTACGTAACATAAAACCTTCCACTATTTCACTCACAATTAA
ATGTCTCAACGTACCATTCACCCATAATAGATATGAATTTGAGATGTATATAATAATAAGATGTA
TAAAATAATATATGAGCTGTATTTAGAATTTTCTTTCAAAACTTTGACGTATACAATTACGTAAA
ATAAAACCTTCTACTCATTCACACGAATTAAGTATCTCAACATGCTATCGACCCATAATCAACAT
GAATTTGAGATATATTTAATAGTGAAGTGTATAAAGTAATACATTATATATATTTAAAATTTTTC
TTTAAAACTTTGACATATGCAATTACATAAAATAAAATCTTTCATAGTTTCACTCACAATTAAGT
GTC
Found at i:10079585 original size:162 final size:162
Alignment explanation
Indices: 10079303--10079756 Score: 468
Period size: 162 Copynumber: 2.8 Consensus size: 162
10079293 AATTAAGTGT
* * * * * * *
10079303 CATGAATTTAAGATATATTTAATAGT-GGGTGTATAAACTAATGTATTAGATGTATTTAGAATTC
1 CATGAATTTGAGATGTATTTAATAGTAAGGTGTATAAAATAATATATTAGATGTATTTAAAATTT
* * * * * **
10079367 TCTTTCGAAACTTTAACGTATGCAATTACGTAATATAAAACCTTCCACTATTTCACTCATAATTA
66 TCTTTCAAAACTTTGACGTATGTAATTACGTAAAATAAAACTTTTTACTATTTCACTCATAATTA
* * *
10079432 AGTGTCTCCACGTGCCATCTA-CTCATAAT-AGA
131 AGTATCTCCACATGCCATCGAGC-CATAATCA-A
* * * * *
10079464 TATGAATTTGAGATGTATTTAATAATAAGGTGTATAAAATAATATATGAGGTGTATTTATAATTT
1 CATGAATTTGAGATGTATTTAATAGTAAGGTGTATAAAATAATATATTAGATGTATTTAAAATTT
* * * * * *
10079529 TCTTTCAAAACTTTGAGGTGTATAATTATGTAAAATAAAACTTTTTACTGTTTCACTCGTAATTA
66 TCTTTCAAAACTTTGACGTATGTAATTACGTAAAATAAAACTTTTTACTATTTCACTCATAATTA
* * **
10079594 AGTATCTCTACATGCTATCGAGCCATGTTCAA
131 AGTATCTCCACATGCCATCGAGCCATAATCAA
* * * *
10079626 CATGAATTTGAGATGTATTTAATAGTGAA-GTGTATAAAGTAATACATTATATATATTTAAAATT
1 CATGAATTTGAGATGTATTTAATAGT-AAGGTGTATAAAATAATATATTAGATGTATTTAAAA-T
* * * * *
10079690 TTTCTTT-AAAATTTTGACGTTTGTAATTACGTAAAATAAAATTTTTTATTATTTTACTCATAAT
64 TTTCTTTCAAAACTTTGACGTATGTAATTACGTAAAATAAAACTTTTTACTATTTCACTCATAAT
10079754 TAA
129 TAA
10079757 ATGTTTCGAT
Statistics
Matches: 238, Mismatches: 50, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
161 22 0.09
162 204 0.86
163 12 0.05
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.41
Consensus pattern (162 bp):
CATGAATTTGAGATGTATTTAATAGTAAGGTGTATAAAATAATATATTAGATGTATTTAAAATTT
TCTTTCAAAACTTTGACGTATGTAATTACGTAAAATAAAACTTTTTACTATTTCACTCATAATTA
AGTATCTCCACATGCCATCGAGCCATAATCAA
Found at i:10086268 original size:34 final size:34
Alignment explanation
Indices: 10086184--10086291 Score: 110
Period size: 34 Copynumber: 3.2 Consensus size: 34
10086174 AATGGTAATA
**
10086184 TGAGAAATTTTGAATCTTTTTAAAAATAGATATT
1 TGAGAAATTTTGAGGCTTTTTAAAAATAGATATT
* * ** ** *
10086218 CGAAAAAACTCAAGGCTTCTTAAAAATAGATATT
1 TGAGAAATTTTGAGGCTTTTTAAAAATAGATATT
*
10086252 TGAGAAATTTTGAGGCTTTTTAAAACT-GAATATT
1 TGAGAAATTTTGAGGCTTTTTAAAAATAG-ATATT
10086286 TGAGAA
1 TGAGAA
10086292 TCTTTAAAGT
Statistics
Matches: 56, Mismatches: 17, Indels: 2
0.75 0.23 0.03
Matches are distributed among these distances:
33 1 0.02
34 55 0.98
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.36
Consensus pattern (34 bp):
TGAGAAATTTTGAGGCTTTTTAAAAATAGATATT
Found at i:10088268 original size:148 final size:153
Alignment explanation
Indices: 10087868--10088445 Score: 507
Period size: 161 Copynumber: 3.7 Consensus size: 153
10087858 ATTTTAATTT
* * * * *
10087868 TGAAATTGAGATGTATTTAATAGTAGAGTGTATAAAGTAATATATGAGATGCATTTAAAATTT-T
1 TGAATTTGAGATGTATTTAATAGTGGGGTGTATAAAGTAATATATG-GGTGTATTTAAAATTTCT
* * *
10087932 CATTTGAAACTTTGACGAATGTAATTACATAAAATAAAACTTTTTACGGTTTCACTCGTAATTAA
65 C-TTTGAAACTTTGATGAATGTAATTACATAAAATAGAAC--CTT-C---TTCACTCG--ATTAA
* * ** * * *
10087997 CTGTCTT-CATGTTCTAT-ATACTCATAGTC-ACA
121 GTAT-TTCCACATGCTATCA-ACCCATAATCAACA
* * * *
10088029 CGAACTTGAGATGTATTTAATAGTGGGGTGTATAAACTAATAGATGGAGTGTATTTAAAATTTCT
1 TGAATTTGAGATGTATTTAATAGTGGGGTGTATAAAGTAATATATGG-GTGTATTTAAAATTTCT
* * *
10088094 CTTTGAAACTTTGATGTATGCAATTACAT-AAATAAAACCTTC-T-ACT-G-TTAAGTATCTT-C
65 CTTTGAAACTTTGATGAATGTAATTACATAAAATAGAACCTTCTTCACTCGATTAAGTAT-TTCC
* *
10088153 ACGTGCTATCAACCCATAATCGACA
129 ACATGCTATCAACCCATAATCAACA
* * *
10088178 TGAATTTGAGATGTATTT-ATAATGGGATGTATAAAGTAATATATAAGGTGTATTTAAAATTT-T
1 TGAATTTGAGATGTATTTAATAGTGGGGTGTATAAAGTAATATAT-GGGTGTATTTAAAATTTCT
* *
10088241 CCTTCGAAACTTTGATGGATGTAATTACATAAAATAGAACCTTCCATCATTTCACTCGTAATTAA
65 -CTTTGAAACTTTGATGAATGTAATTACATAAAATAGAACC-T---TC--TTCACTCG--ATTAA
* * *
10088306 GTGTTTCCACATGTTATCTACCCATAATCAACA
121 GTATTTCCACATGCTATCAACCCATAATCAACA
* *
10088339 TGAATTTGAGATGTATTTAATAGTGGGGCGTATAAAGTAATATATGGG-GTTATTTAGAATTTCT
1 TGAATTTGAGATGTATTTAATAGTGGGGTGTATAAAGTAATATATGGGTG-TATTTAAAATTTCT
* * *
10088403 CTTTGAAATTTTGATCAATGTAATTACGTAAAATAGAACCTTC
65 CTTTGAAACTTTGATGAATGTAATTACATAAAATAGAACCTTC
10088446 CAACGTTTCA
Statistics
Matches: 350, Mismatches: 44, Indels: 50
0.79 0.10 0.11
Matches are distributed among these distances:
147 1 0.00
148 88 0.25
149 30 0.09
150 1 0.00
151 1 0.00
152 3 0.01
153 3 0.01
156 1 0.00
157 6 0.02
158 3 0.01
160 14 0.04
161 173 0.49
162 26 0.07
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.37
Consensus pattern (153 bp):
TGAATTTGAGATGTATTTAATAGTGGGGTGTATAAAGTAATATATGGGTGTATTTAAAATTTCTC
TTTGAAACTTTGATGAATGTAATTACATAAAATAGAACCTTCTTCACTCGATTAAGTATTTCCAC
ATGCTATCAACCCATAATCAACA
Found at i:10088536 original size:93 final size:92
Alignment explanation
Indices: 10088373--10088562 Score: 256
Period size: 93 Copynumber: 2.1 Consensus size: 92
10088363 GGGGCGTATA
* * *
10088373 AAGTAATATATGGGGTTATTTAGAATTTCTCTTTGAAATTTTGATCAATGTAATTACGTAAAATA
1 AAGTAATATATGGGGTTATTTAGAATTTCTCTTTAAAATTTTGATCAATGCAATTACATAAAATA
* **
10088438 GAACCTTCCAACGTTTCACTCGCAATT
66 GAACCTTCCAACATTTCACTAACAATT
**
10088465 AAGTAATATATGGGGTGTATTTAGAATTT-TCCTTTAAAATTTTGATGGATGCAATTACATAAAA
1 AAGTAATATATGGGGT-TATTTAGAATTTCT-CTTTAAAATTTTGATCAATGCAATTACATAAAA
* * *
10088529 TATAACCTTTCACCATTTCACTAACAATT
64 TAGAACCTTCCAACATTTCACTAACAATT
10088558 AAGTA
1 AAGTA
10088563 TTTTCACGTG
Statistics
Matches: 85, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
92 17 0.20
93 68 0.80
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (92 bp):
AAGTAATATATGGGGTTATTTAGAATTTCTCTTTAAAATTTTGATCAATGCAATTACATAAAATA
GAACCTTCCAACATTTCACTAACAATT
Found at i:10088979 original size:163 final size:163
Alignment explanation
Indices: 10088730--10089046 Score: 395
Period size: 163 Copynumber: 1.9 Consensus size: 163
10088720 TAGGATATAC
* *
10088730 AAAGTAAAATATGAGGTGTATTTAGAATTTTTCTTCAAAATTTTGACATATATAATTACATAAAA
1 AAAGTAAAATATGAGGTGTATTTAGAATTTTTCTTCAAAATTTTAACATATACAATTACATAAAA
* * * * * * * *
10088795 TAGAATATTTCACCGTTTTACTCGTAATTAAATGTCTCTACGTGTTATTTATCTATAGTCAATAT
66 TAGAACATTCCACCGTTTTACTCGTAATTAAATGTCTCCAAGTGTTATCTACCTATAATCAACAT
*
10088860 GAATTTGAAATGTATTTAATAGTGAAAGTGTAT
131 AAATTTGAAATGTATTTAATAGTGAAAGTGTAT
* * * * * *
10088893 AAAGTAATATATGGGGTGTATTTATAA-TTTTCTTACGAAATTTTAACGTA-AGCAATTACGTAA
1 AAAGTAAAATATGAGGTGTATTTAGAATTTTTCTT-CAAAATTTTAACATATA-CAATTACATAA
* ** *
10088956 AATAGAACATTCCATCGTTTTACTTTTAATTAAGTGTCTCCAAGTGTTATCTACCTATAATCAAC
64 AATAGAACATTCCACCGTTTTACTCGTAATTAAATGTCTCCAAGTGTTATCTACCTATAATCAAC
* *
10089021 ATAAATTTGAGATGTTTTTAATAGTG
129 ATAAATTTGAAATGTATTTAATAGTG
10089047 GGGTGTTTGC
Statistics
Matches: 129, Mismatches: 23, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
162 8 0.06
163 121 0.94
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.40
Consensus pattern (163 bp):
AAAGTAAAATATGAGGTGTATTTAGAATTTTTCTTCAAAATTTTAACATATACAATTACATAAAA
TAGAACATTCCACCGTTTTACTCGTAATTAAATGTCTCCAAGTGTTATCTACCTATAATCAACAT
AAATTTGAAATGTATTTAATAGTGAAAGTGTAT
Found at i:10089179 original size:138 final size:139
Alignment explanation
Indices: 10088928--10089181 Score: 305
Period size: 138 Copynumber: 1.8 Consensus size: 139
10088918 AATTTTCTTA
* * * * * **
10088928 CGAAATTTTAACGTAAGCAATTACGTAAAATAGAACATTCCATCGTTTTACTTTTAATTAAGTGT
1 CGAAACTTTAACGTAAGCAATTACATAAAATAAAACACTCCATCATTTTACTTAGAATTAAGTGT
* * * * *
10088993 CTCCAAGTGTTATCTACCTATAATCAACATAAATTTGAGATGTTTTTAATAGTGGGGTGTTTGCA
66 CTCCAAGTGCTATCTACCTATAATCAACATAAATTTAAAATATATTTAATAGTGGGGTGTTTGCA
10089058 ATTCCTTTT
131 ATTCCTTTT
* *
10089067 CGAAACTTTAACTTATGCAATTACATAAAATAAAACACT-CATCATTTTACTTAGAATTAAGTGT
1 CGAAACTTTAACGTAAGCAATTACATAAAATAAAACACTCCATCATTTTACTTAGAATTAAGTGT
* * * * * *
10089131 TTCCATGTGCTATTTACCTAT-AGCTAGCATGAATTTAAAATATATTTAATA
66 CTCCAAGTGCTATCTACCTATAATC-AACATAAATTTAAAATATATTTAATA
10089182 ATGAGATATA
Statistics
Matches: 94, Mismatches: 20, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
137 2 0.02
138 59 0.63
139 33 0.35
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.39
Consensus pattern (139 bp):
CGAAACTTTAACGTAAGCAATTACATAAAATAAAACACTCCATCATTTTACTTAGAATTAAGTGT
CTCCAAGTGCTATCTACCTATAATCAACATAAATTTAAAATATATTTAATAGTGGGGTGTTTGCA
ATTCCTTTT
Found at i:10091273 original size:2 final size:2
Alignment explanation
Indices: 10091266--10091296 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
10091256 TTTATGATGT
10091266 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10091297 GTTAATGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10094372 original size:17 final size:16
Alignment explanation
Indices: 10094352--10094406 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 16
10094342 TGTGTAACAC
10094352 AATTTCATGATATAAAT
1 AATTT-ATGATATAAAT
*
10094369 AATTT-TGATACAAAT
1 AATTTATGATATAAAT
10094384 -ATTTAAATGATATAAAT
1 AATTT--ATGATATAAAT
10094401 AATTTA
1 AATTTA
10094407 AATATGAACA
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
14 4 0.12
15 9 0.28
16 1 0.03
17 14 0.44
18 4 0.12
ACGTcount: A:0.49, C:0.04, G:0.05, T:0.42
Consensus pattern (16 bp):
AATTTATGATATAAAT
Found at i:10094506 original size:19 final size:19
Alignment explanation
Indices: 10094482--10094530 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
10094472 AAATAATATG
*
10094482 ATACGATTAATATGATTAT
1 ATACGATTAATATGATTAA
*
10094501 ATACGAATAATATGATTAA
1 ATACGATTAATATGATTAA
10094520 ATACGATTAAT
1 ATACGATTAAT
10094531 TTATTTATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.47, C:0.06, G:0.10, T:0.37
Consensus pattern (19 bp):
ATACGATTAATATGATTAA
Found at i:10094687 original size:34 final size:33
Alignment explanation
Indices: 10094623--10094688 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
10094613 ATACCAAAAT
*
10094623 AATAAAATAAATAAATTATTAATTTATTTTTTA
1 AATAAAATAAATAAATTATTAAATTATTTTTTA
* * *
10094656 AATAAATTAAAATAAATTTTTAAAAT-TTTTTTA
1 AATAAAAT-AAATAAATTATTAAATTATTTTTTA
10094689 TGCTATAAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 14 0.50
34 14 0.50
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (33 bp):
AATAAAATAAATAAATTATTAAATTATTTTTTA
Found at i:10095095 original size:17 final size:17
Alignment explanation
Indices: 10095070--10095127 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
10095060 ATAAATTTTG
*
10095070 ATATATTTATTAAATAA
1 ATATTTTTATTAAATAA
* *
10095087 ATATTTTTAATAAAAAA
1 ATATTTTTATTAAATAA
* *
10095104 ATTTTTTTTCATTGAATAA
1 A-TATTTTT-ATTAAATAA
10095123 ATATT
1 ATATT
10095128 AATCAATTTT
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
17 15 0.48
18 9 0.29
19 7 0.23
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (17 bp):
ATATTTTTATTAAATAA
Found at i:10101034 original size:18 final size:18
Alignment explanation
Indices: 10100998--10101042 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
10100988 TGAATTTTTT
10100998 TTTTATTAAAAAATATAAA
1 TTTTATT-AAAAATATAAA
* *
10101017 TTTTATTAAAATTTTAAA
1 TTTTATTAAAAATATAAA
*
10101035 TTATATTA
1 TTTTATTA
10101043 TTTTTATATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 16 0.70
19 7 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTTATTAAAAATATAAA
Found at i:10104982 original size:25 final size:25
Alignment explanation
Indices: 10104948--10104997 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
10104938 ACGCCCTCTT
10104948 GTCTTTCCTTCTTAGAAAGTAGGTA
1 GTCTTTCCTTCTTAGAAAGTAGGTA
10104973 GTCTTTCCTTCTTAGAAAGTAGGTA
1 GTCTTTCCTTCTTAGAAAGTAGGTA
10104998 ACTTTTTTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (25 bp):
GTCTTTCCTTCTTAGAAAGTAGGTA
Found at i:10108067 original size:20 final size:20
Alignment explanation
Indices: 10108042--10108082 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
10108032 GATACTGTGA
10108042 TGGGCAAGTTTTGGATGCTC
1 TGGGCAAGTTTTGGATGCTC
10108062 TGGGCAAGTTTTGGATGCTC
1 TGGGCAAGTTTTGGATGCTC
10108082 T
1 T
10108083 TGATGTCCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.15, C:0.15, G:0.34, T:0.37
Consensus pattern (20 bp):
TGGGCAAGTTTTGGATGCTC
Found at i:10116916 original size:29 final size:28
Alignment explanation
Indices: 10116883--10116937 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
10116873 TTTAAAGGTC
10116883 TTTTTAAAATAATCACTTAAATATTAATT
1 TTTTTAAAATAATCACTTAAAT-TTAATT
** *
10116912 TTTTTAATTTAATTACTTAAATTTAA
1 TTTTTAAAATAATCACTTAAATTTAA
10116938 ATAAATATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 4 0.17
29 19 0.83
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (28 bp):
TTTTTAAAATAATCACTTAAATTTAATT
Found at i:10118551 original size:40 final size:40
Alignment explanation
Indices: 10118507--10118587 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
10118497 CGGCTATTAC
*
10118507 TACTTTTTTTTATTTCCACAGAACAACTATTACATTTTTT
1 TACTTTCTTTTATTTCCACAGAACAACTATTACATTTTTT
10118547 TACTTTCTTTTATTTCCACAGAACAACTATTACATTTTTT
1 TACTTTCTTTTATTTCCACAGAACAACTATTACATTTTTT
10118587 T
1 T
10118588 TTTTGAATAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.27, C:0.19, G:0.02, T:0.52
Consensus pattern (40 bp):
TACTTTCTTTTATTTCCACAGAACAACTATTACATTTTTT
Found at i:10118865 original size:18 final size:17
Alignment explanation
Indices: 10118837--10118872 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
10118827 CTTCTATTTA
10118837 ATCATTAATTAAATAAT
1 ATCATTAATTAAATAAT
*
10118854 ATCATCTAATTAATTAAT
1 ATCAT-TAATTAAATAAT
10118872 A
1 A
10118873 ATATATGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (17 bp):
ATCATTAATTAAATAAT
Found at i:10118949 original size:16 final size:16
Alignment explanation
Indices: 10118905--10118941 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
10118895 AAATACATCA
*
10118905 AATATAAATT-TATTT
1 AATAAAAATTATATTT
10118920 AATAAAAATTATATTT
1 AATAAAAATTATATTT
10118936 AATAAA
1 AATAAA
10118942 TAATATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AATAAAAATTATATTT
Found at i:10124465 original size:23 final size:23
Alignment explanation
Indices: 10124435--10124505 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 23
10124425 TTTGGTTATG
*
10124435 ATTTGTTTATTGTTCATGAATAT
1 ATTTGTTTATTGTTCATGAACAT
*
10124458 ATTTGTTTATATATGTTCGTGAACAT
1 ATTTG-TT-TAT-TGTTCATGAACAT
* * *
10124484 GTTTGTTTAATATTCATGAACA
1 ATTTGTTTATTGTTCATGAACA
10124506 AGCTTGTTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
23 15 0.38
24 4 0.10
25 5 0.13
26 15 0.38
ACGTcount: A:0.28, C:0.07, G:0.14, T:0.51
Consensus pattern (23 bp):
ATTTGTTTATTGTTCATGAACAT
Found at i:10124488 original size:26 final size:25
Alignment explanation
Indices: 10124435--10124505 Score: 78
Period size: 26 Copynumber: 3.0 Consensus size: 25
10124425 TTTGGTTATG
*
10124435 ATTTGTTT-AT-TGTTCATGAATAT
1 ATTTGTTTAATATGTTCATGAACAT
*
10124458 ATTTGTTTATATATGTTCGTGAACAT
1 ATTTGTTTA-ATATGTTCATGAACAT
*
10124484 GTTTGTTTAATA--TTCATGAACA
1 ATTTGTTTAATATGTTCATGAACA
10124506 AGCTTGTTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
23 17 0.41
25 5 0.12
26 19 0.46
ACGTcount: A:0.28, C:0.07, G:0.14, T:0.51
Consensus pattern (25 bp):
ATTTGTTTAATATGTTCATGAACAT
Found at i:10128718 original size:33 final size:33
Alignment explanation
Indices: 10128679--10128753 Score: 107
Period size: 33 Copynumber: 2.3 Consensus size: 33
10128669 AAGTTAATAG
*
10128679 TATTTTTGTGATAAATGCTTTCAAATTTAATGAC
1 TATTTTTGTGATAAATACTTT-AAATTTAATGAC
* *
10128713 -GTTTTTGTGATAAATACTTTAAATTTAGTGAC
1 TATTTTTGTGATAAATACTTTAAATTTAATGAC
10128745 TATTTTTGT
1 TATTTTTGT
10128754 TCTTTAACGG
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 11 0.31
33 25 0.69
ACGTcount: A:0.29, C:0.07, G:0.13, T:0.51
Consensus pattern (33 bp):
TATTTTTGTGATAAATACTTTAAATTTAATGAC
Found at i:10135413 original size:22 final size:22
Alignment explanation
Indices: 10135385--10135428 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
10135375 CTAAATCTTC
*
10135385 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
10135407 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
10135429 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:10138192 original size:24 final size:20
Alignment explanation
Indices: 10138150--10138197 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
10138140 ACCTTAGTAC
10138150 AATCATCTATGAATGAAACA
1 AATCATCTATGAATGAAACA
10138170 AATCATCTATGAATGAAACA
1 AATCATCTATGAATGAAACA
*
10138190 AACCATCT
1 AATCATCT
10138198 CGCACCATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.48, C:0.19, G:0.08, T:0.25
Consensus pattern (20 bp):
AATCATCTATGAATGAAACA
Found at i:10138903 original size:18 final size:18
Alignment explanation
Indices: 10138882--10138917 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
10138872 TAATTTATGA
*
10138882 GAACCAGAAGCTTTACCT
1 GAACCAGAAACTTTACCT
*
10138900 GAACTAGAAACTTTACCT
1 GAACCAGAAACTTTACCT
10138918 AAAGAACATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (18 bp):
GAACCAGAAACTTTACCT
Found at i:10139311 original size:22 final size:22
Alignment explanation
Indices: 10139283--10139326 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
10139273 TTAAATCTTC
*
10139283 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
10139305 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
10139327 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:10152529 original size:30 final size:30
Alignment explanation
Indices: 10152493--10152556 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
10152483 CCCAGTGACC
*
10152493 CTCCTATTATGTTCGATGTGGGATTTAGGA
1 CTCCTATTATGTTCGATGTGGGATTCAGGA
10152523 CTCCTATTATGTTCGATGTGGGATTCAGGA
1 CTCCTATTATGTTCGATGTGGGATTCAGGA
10152553 CTCC
1 CTCC
10152557 CCTTAGGTCC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.38
Consensus pattern (30 bp):
CTCCTATTATGTTCGATGTGGGATTCAGGA
Found at i:10153031 original size:372 final size:369
Alignment explanation
Indices: 10152527--10153301 Score: 1006
Period size: 372 Copynumber: 2.1 Consensus size: 369
10152517 TTAGGACTCC
*
10152527 TATTATGTTCGATGTGGGATTCAGGACTCCCCTTAGGTCCGTGACATTCTTCCGTACTCAACCTC
1 TATTATGTTCGATGTGGGATTCAGGACTCCCCTTAGGTCCGTGACATTCTTCCGCACTCAACCTC
* * * * * *
10152592 GTGACGCCTTCGTCACGGAGGCCGGCCACCTTGCCTACCTCCCTCGAGGTGCTTGGCGTGGATCG
66 GTGACGCCCTCGTCACGGAGGCCGACCACCTTGCCTACCTCACTCGAGGCGCTCGGCGTGAATCG
* *
10152657 AACGGTTTAGGACTGGTTCTGATACCACTTGTCATGGGTCGAGACTCAAGCTCCGAACCCATGC-
131 AACGGTTTAGGACTGGCTCTGATACCACTTGTCACGGGTCGAGACTCAAGCTCCGAACCC--GCG
* * * * *
10152721 T-GCTTCGAGACCAGGGCATTCACTCTTCCTGCGT-CTCAGATCAGCCTGACC-GTCACGGTTCA
194 TGGCTCCGAGACCAGAGCATTCACCCTTCCGGCGTCCT-AGATCAGCCT-ACCTGCCACGGTTCA
* * * * *
10152783 CACCCTTATGAGGTATTATCCGCTCTGGCCCCCCCTGGCCTTACGGTTTTGTCCTACAAAAGGTG
257 CACCCTTATGAGGTATTATCCGCT-TGG-ACCCCCTGGCCTCACGATTTTATCCTACAAAAGGCG
* * * **
10152848 CCTCATAAGGCGGAGATGGTGTGAACCTTTTTATACCCCAGTGACCCTCT
320 CCTCACAAGGCGAAAATGGTGTGAACCCCTTTATACCCCAGTGACCCTCT
* * *
10152898 TATTATGTTCGATGTGGGATTCATGACTCTCCCTTAGGTCTGTGACATTC-TCTTGCAC-CTAAC
1 TATTATGTTCGATGTGGGATTCAGGACTC-CCCTTAGGTCCGTGACATTCTTC-CGCACTC-AAC
* *
10152961 CTCGTGACGCCCTCGTCACGGAGGTCGACCATCC-TGCTTACCTCACTCGAGGCGCTCGGCGTGA
63 CTCGTGACGCCCTCGTCACGGAGGCCGACCA-CCTTGCCTACCTCACTCGAGGCGCTCGGCGTGA
* *
10153025 ATCGAACGGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTCAAGCTCTGAACCCG
127 ATCGAACGGTTTAGGACTGGCTCTGATACCACTTGTCACGGGTCGAGACTCAAGCTCCGAACCCG
* * * *
10153090 CGTGGCTCCGGGACCCGAGCATTCACCCTTTCGGCGTCCTAGATCAGCCTTCCTGCCACGGTTCA
192 CGTGGCTCCGAGACCAGAGCATTCACCCTTCCGGCGTCCTAGATCAGCCTACCTGCCACGGTTCA
* * * * *
10153155 CATCCTTGTGAGGTATTGTCCGCTTTGACTCCCTGGCCTCACGATTTTATCCTACAAAAGGCGCC
257 CACCCTTATGAGGTATTATCCGCTTGGACCCCCTGGCCTCACGATTTTATCCTACAAAAGGCGCC
*
10153220 TCACAAGGCGAAAATGGTGTGAACCCCTTTATACTCCAGTGACCCTCT
322 TCACAAGGCGAAAATGGTGTGAACCCCTTTATACCCCAGTGACCCTCT
* ** *
10153268 TATTATGTTCAATGTAAGATTCAGGATTCCCCTT
1 TATTATGTTCGATGTGGGATTCAGGACTCCCCTT
10153302 TATATCCGTG
Statistics
Matches: 350, Mismatches: 46, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
369 5 0.01
370 100 0.29
371 36 0.10
372 205 0.59
373 4 0.01
ACGTcount: A:0.19, C:0.30, G:0.23, T:0.28
Consensus pattern (369 bp):
TATTATGTTCGATGTGGGATTCAGGACTCCCCTTAGGTCCGTGACATTCTTCCGCACTCAACCTC
GTGACGCCCTCGTCACGGAGGCCGACCACCTTGCCTACCTCACTCGAGGCGCTCGGCGTGAATCG
AACGGTTTAGGACTGGCTCTGATACCACTTGTCACGGGTCGAGACTCAAGCTCCGAACCCGCGTG
GCTCCGAGACCAGAGCATTCACCCTTCCGGCGTCCTAGATCAGCCTACCTGCCACGGTTCACACC
CTTATGAGGTATTATCCGCTTGGACCCCCTGGCCTCACGATTTTATCCTACAAAAGGCGCCTCAC
AAGGCGAAAATGGTGTGAACCCCTTTATACCCCAGTGACCCTCT
Found at i:10155241 original size:16 final size:17
Alignment explanation
Indices: 10155199--10155243 Score: 65
Period size: 16 Copynumber: 2.7 Consensus size: 17
10155189 GGACTAAATT
10155199 TAAATATAAAATTATAA
1 TAAATATAAAATTATAA
* *
10155216 AAAATTTAAAATT-TAA
1 TAAATATAAAATTATAA
10155232 TAAATATAAAAT
1 TAAATATAAAAT
10155244 AATATTTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
16 13 0.54
17 11 0.46
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TAAATATAAAATTATAA
Found at i:10155429 original size:17 final size:16
Alignment explanation
Indices: 10155404--10155439 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
10155394 GATTTAATTT
10155404 AAATATAAAATTATAAA
1 AAATATAAAATT-TAAA
*
10155421 AAATTTAAAATTTAAA
1 AAATATAAAATTTAAA
10155437 AAA
1 AAA
10155440 CGTGAGATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
AAATATAAAATTTAAA
Found at i:10157206 original size:24 final size:24
Alignment explanation
Indices: 10157179--10157229 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
10157169 TGACGACCGT
* *
10157179 AGGAAAAGGAGGTGGTGGTGCTGG
1 AGGAAAAGGAAGTGGTGGAGCTGG
** *
10157203 AGGAGGAGGAAGTGGTGGAGGTGG
1 AGGAAAAGGAAGTGGTGGAGCTGG
10157227 AGG
1 AGG
10157230 TGGAGGTGGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.25, C:0.02, G:0.59, T:0.14
Consensus pattern (24 bp):
AGGAAAAGGAAGTGGTGGAGCTGG
Found at i:10157225 original size:6 final size:6
Alignment explanation
Indices: 10157216--10157244 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
10157206 AGGAGGAAGT
10157216 GGTGGA GGTGGA GGTGGA GGTGGA GGTGG
1 GGTGGA GGTGGA GGTGGA GGTGGA GGTGG
10157245 TGCCAATGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.14, C:0.00, G:0.69, T:0.17
Consensus pattern (6 bp):
GGTGGA
Found at i:10157234 original size:24 final size:24
Alignment explanation
Indices: 10157185--10157235 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
10157175 CCGTAGGAAA
* *
10157185 AGGAGGTGGTGGTGCTGGAGGAGG
1 AGGAAGTGGTGGAGCTGGAGGAGG
* *
10157209 AGGAAGTGGTGGAGGTGGAGGTGG
1 AGGAAGTGGTGGAGCTGGAGGAGG
10157233 AGG
1 AGG
10157236 TGGAGGTGGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.20, C:0.02, G:0.63, T:0.16
Consensus pattern (24 bp):
AGGAAGTGGTGGAGCTGGAGGAGG
Found at i:10157277 original size:24 final size:24
Alignment explanation
Indices: 10157250--10157296 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
10157240 GGTGGTGCCA
* *
10157250 ATGGTTTAGGGTCTGGTTCTGGAT
1 ATGGTTCAGGGTATGGTTCTGGAT
10157274 ATGGTTCAGGGTATGGTTCTGGA
1 ATGGTTCAGGGTATGGTTCTGGA
10157297 AGTGGCTCCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.15, C:0.09, G:0.38, T:0.38
Consensus pattern (24 bp):
ATGGTTCAGGGTATGGTTCTGGAT
Found at i:10157278 original size:12 final size:12
Alignment explanation
Indices: 10157263--10157316 Score: 56
Period size: 12 Copynumber: 4.5 Consensus size: 12
10157253 GTTTAGGGTC
10157263 TGGTTCTGGATA
1 TGGTTCTGGATA
* *
10157275 TGGTTCAGGGTA
1 TGGTTCTGGATA
10157287 TGGTTCTGGA-A
1 TGGTTCTGGATA
* *
10157298 GTGGCTCCGGATA
1 -TGGTTCTGGATA
10157311 TGGTTC
1 TGGTTC
10157317 AGGAGCTTAT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
11 1 0.03
12 31 0.94
13 1 0.03
ACGTcount: A:0.15, C:0.13, G:0.37, T:0.35
Consensus pattern (12 bp):
TGGTTCTGGATA
Found at i:10157312 original size:24 final size:24
Alignment explanation
Indices: 10157263--10157316 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
10157253 GTTTAGGGTC
* *
10157263 TGGTTCTGGATATGGTTCAGGGTA
1 TGGTTCTGGATATGGCTCAGGATA
*
10157287 TGGTTCTGGA-AGTGGCTCCGGATA
1 TGGTTCTGGATA-TGGCTCAGGATA
10157311 TGGTTC
1 TGGTTC
10157317 AGGAGCTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 1 0.04
24 25 0.96
ACGTcount: A:0.15, C:0.13, G:0.37, T:0.35
Consensus pattern (24 bp):
TGGTTCTGGATATGGCTCAGGATA
Found at i:10157353 original size:24 final size:24
Alignment explanation
Indices: 10157326--10157375 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
10157316 CAGGAGCTTA
10157326 TGGTAGCGGAGGAGGTGGAGGTGG
1 TGGTAGCGGAGGAGGTGGAGGTGG
* * * *
10157350 TGGTGGCGGGGGCGGTGGTGGTGG
1 TGGTAGCGGAGGAGGTGGAGGTGG
10157374 TG
1 TG
10157376 AAGGTGGCTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.08, C:0.06, G:0.66, T:0.20
Consensus pattern (24 bp):
TGGTAGCGGAGGAGGTGGAGGTGG
Found at i:10157461 original size:3 final size:3
Alignment explanation
Indices: 10157441--10157493 Score: 52
Period size: 3 Copynumber: 17.7 Consensus size: 3
10157431 CAGTGGGATA
* * * * * *
10157441 GGT GGC GGT GGA GGT GGT GGT GGT GGT AGA GGA GGT GGT GGT GGT GGA
1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT
10157489 GGT GG
1 GGT GG
10157494 AGGCAATGGA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.09, C:0.02, G:0.66, T:0.23
Consensus pattern (3 bp):
GGT
Found at i:10157472 original size:18 final size:18
Alignment explanation
Indices: 10157441--10157493 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
10157431 CAGTGGGATA
*
10157441 GGTGGCGGTGGAGGTGGT
1 GGTGGTGGTGGAGGTGGT
* *
10157459 GGTGGTGGTAGAGGAGGT
1 GGTGGTGGTGGAGGTGGT
10157477 GGTGGTGGTGGAGGTGG
1 GGTGGTGGTGGAGGTGG
10157494 AGGCAATGGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.09, C:0.02, G:0.66, T:0.23
Consensus pattern (18 bp):
GGTGGTGGTGGAGGTGGT
Found at i:10157563 original size:18 final size:18
Alignment explanation
Indices: 10157540--10157575 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
10157530 CGGATCCGGG
10157540 TATGGAAGTGGGTCTGGT
1 TATGGAAGTGGGTCTGGT
10157558 TATGGAAGTGGGTCTGGT
1 TATGGAAGTGGGTCTGGT
10157576 AAAGGTGGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.06, G:0.44, T:0.33
Consensus pattern (18 bp):
TATGGAAGTGGGTCTGGT
Found at i:10157593 original size:9 final size:9
Alignment explanation
Indices: 10157579--10157635 Score: 69
Period size: 9 Copynumber: 6.3 Consensus size: 9
10157569 GTCTGGTAAA
10157579 GGTGGAGGT
1 GGTGGAGGT
*
10157588 GGTGGAGGA
1 GGTGGAGGT
10157597 GGTGGAGGT
1 GGTGGAGGT
* *
10157606 AGTGGAGGG
1 GGTGGAGGT
*
10157615 GGCGGAGGT
1 GGTGGAGGT
*
10157624 GGAGGAGGT
1 GGTGGAGGT
10157633 GGT
1 GGT
10157636 TCTGGACACG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 39 1.00
ACGTcount: A:0.16, C:0.02, G:0.67, T:0.16
Consensus pattern (9 bp):
GGTGGAGGT
Found at i:10158110 original size:15 final size:16
Alignment explanation
Indices: 10158090--10158119 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
10158080 GAATAATTAC
10158090 AGAATTAT-AATAAAA
1 AGAATTATAAATAAAA
10158105 AGAATTATAAATAAA
1 AGAATTATAAATAAA
10158120 TAAACCCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (16 bp):
AGAATTATAAATAAAA
Found at i:10158837 original size:21 final size:19
Alignment explanation
Indices: 10158804--10158846 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
10158794 TTTTTAATTT
10158804 TAAAAAATTT-AAATATATA
1 TAAAAAATTTAAAAT-TATA
10158823 TAAAAAATTAGTAAAATTATA
1 TAAAAAATT--TAAAATTATA
10158844 TAA
1 TAA
10158847 TTTAGACTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 9 0.43
21 8 0.38
22 4 0.19
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (19 bp):
TAAAAAATTTAAAATTATA
Found at i:10158911 original size:15 final size:15
Alignment explanation
Indices: 10158887--10158916 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
10158877 TTATTTTTCG
10158887 ATATAAATTTAATAT
1 ATATAAATTTAATAT
*
10158902 ATATATATTTAATAT
1 ATATAAATTTAATAT
10158917 TCAAATCGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
ATATAAATTTAATAT
Found at i:10162166 original size:177 final size:172
Alignment explanation
Indices: 10161850--10162170 Score: 410
Period size: 177 Copynumber: 1.8 Consensus size: 172
10161840 ATCACGAAAA
*
10161850 GAGATGAAAACTTCTGTCAGGCTTGGGCTTAGTGATAGATGGAATAGTGCAAAATAATTATTATG
1 GAGATGAAAACTTCTGTCAGGCTTGGGCTTAGTGATAGATGGAATAGTGAAAAATAATTATTATG
* * *
10161915 GATTAAAGAAAATATGTTTTCTCCCAAAAAAAAAAAGTTACAAGCACATCGTGCAGACAGCTAAG
66 GATGAAAGAAAATATGTTTTCTCCCAAAAAAAAAAAGTTACAAACACATCATGCAGACAGCTAAG
*
10161980 TTTTAATGTTTAACTTAATAGCACAGCCAAAAAAGCTTTAAT
131 CTTTAATGTTTAACTTAATAGCACAGCCAAAAAAGCTTTAAT
* * * *
10162022 GAGATAGAAGACTTCTGTCCGGCTTGGTCTTAGTGATAGATGGAATAGCAT-AAAAATAATTGTT
1 GAGAT-GAAAACTTCTGTCAGGCTTGGGCTTAGTGATAGATGGAATAG--TGAAAAATAATTATT
* *** * * * ** *
10162086 ATGGCTGAAAGATTTGTGATTTTTTCTCCCCAAAACAAAAAAGTTAGAAACGTATCATGCTGACA
63 ATGGATGAAAGA-AAAT-ATGTTTTCT-CCCAAAAAAAAAAAGTTACAAACACATCATGCAGACA
10162151 GCTAAGCTTTAATGTTTAAC
125 GCTAAGCTTTAATGTTTAAC
10162171 GTTTATCAAA
Statistics
Matches: 124, Mismatches: 19, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
172 5 0.04
173 39 0.31
174 21 0.17
175 2 0.02
176 8 0.06
177 49 0.40
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (172 bp):
GAGATGAAAACTTCTGTCAGGCTTGGGCTTAGTGATAGATGGAATAGTGAAAAATAATTATTATG
GATGAAAGAAAATATGTTTTCTCCCAAAAAAAAAAAGTTACAAACACATCATGCAGACAGCTAAG
CTTTAATGTTTAACTTAATAGCACAGCCAAAAAAGCTTTAAT
Found at i:10170023 original size:113 final size:113
Alignment explanation
Indices: 10169819--10170033 Score: 308
Period size: 113 Copynumber: 1.9 Consensus size: 113
10169809 ACATTGTACT
* * *
10169819 TTTAAAAAATAGATCTAGTTGTGTACTTTTTTTAGGGTTTTTCTTTTTTAATTAATTGTGTCCCT
1 TTTAAAAAATAGATATAGTAGTGTACTTTTTTTAGGGTTTTTC-TCTTTAATTAATTGTGTCCCT
* *
10169884 AATCCTCAAATTACTACTTTAAAATTGGAATAGGATACAAATTTGAAGA
65 AATCCTAAAATAACTACTTTAAAATTGGAATAGGATACAAATTTGAAGA
* * *
10169933 TTTATAAAATAGATATAGTAGTGTACTATTTTTTTAGGGTTTTTC-CTTT-ATTAATTGTTTCCT
1 TTTAAAAAATAGATATAGTAGTGTAC--TTTTTTTAGGGTTTTTCTCTTTAATTAATTGTGTCCC
*
10169996 TAATCCTAAAATAACTACTTTATAATTGGAATAGGATA
64 TAATCCTAAAATAACTACTTTAAAATTGGAATAGGATA
10170034 ACACTTTGAA
Statistics
Matches: 90, Mismatches: 9, Indels: 5
0.87 0.09 0.05
Matches are distributed among these distances:
113 47 0.52
114 26 0.29
116 17 0.19
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.45
Consensus pattern (113 bp):
TTTAAAAAATAGATATAGTAGTGTACTTTTTTTAGGGTTTTTCTCTTTAATTAATTGTGTCCCTA
ATCCTAAAATAACTACTTTAAAATTGGAATAGGATACAAATTTGAAGA
Found at i:10171458 original size:38 final size:39
Alignment explanation
Indices: 10171383--10171458 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
10171373 TATGAATTTT
10171383 ATCTTTGAAATAACTTTTATTTAGTTTCAAAATTTTATC
1 ATCTTTGAAATAACTTTTATTTAGTTTCAAAATTTTATC
* *
10171422 ATCTTTGAAATAATTTTTATTT-TTTTCAAAATTTTAT
1 ATCTTTGAAATAACTTTTATTTAGTTTCAAAATTTTAT
10171459 TACATTTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
38 14 0.40
39 21 0.60
ACGTcount: A:0.33, C:0.08, G:0.04, T:0.55
Consensus pattern (39 bp):
ATCTTTGAAATAACTTTTATTTAGTTTCAAAATTTTATC
Found at i:10171727 original size:17 final size:18
Alignment explanation
Indices: 10171707--10171751 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
10171697 TAAAATTTAG
10171707 ATAAA-TAACAAATT-AAA
1 ATAAATTAA-AAATTCAAA
10171724 ATAAATTAAAAATTCAAA
1 ATAAATTAAAAATTCAAA
10171742 A-ATAATTAAA
1 ATA-AATTAAA
10171752 TAAAAACAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 11 0.44
18 14 0.56
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (18 bp):
ATAAATTAAAAATTCAAA
Found at i:10171778 original size:31 final size:31
Alignment explanation
Indices: 10171740--10171809 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
10171730 TAAAAATTCA
10171740 AAAATAATT-AAATAAAAACAAAAAATAAAG-T
1 AAAATAATTGAAA-AAAAA-AAAAAATAAAGTT
* *
10171771 AAAATAATTGAAAACAAAAATAAATAAAGTT
1 AAAATAATTGAAAAAAAAAAAAAATAAAGTT
*
10171802 ATAATAAT
1 AAAATAAT
10171810 AATTTAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 10 0.29
31 21 0.62
32 3 0.09
ACGTcount: A:0.70, C:0.03, G:0.04, T:0.23
Consensus pattern (31 bp):
AAAATAATTGAAAAAAAAAAAAAATAAAGTT
Found at i:10172527 original size:21 final size:21
Alignment explanation
Indices: 10172503--10172566 Score: 53
Period size: 21 Copynumber: 3.1 Consensus size: 21
10172493 TATAGTGTAG
*
10172503 TAAATAAAATATTATTTTATT
1 TAAATAAAATAATATTTTATT
**
10172524 TAAAGT-TTATACA-ATTTTA-T
1 TAAA-TAAAATA-ATATTTTATT
*
10172544 TAAATAAAATAATGTTTTATT
1 TAAATAAAATAATATTTTATT
10172565 TA
1 TA
10172567 GAATTTATAA
Statistics
Matches: 32, Mismatches: 6, Indels: 10
0.67 0.12 0.21
Matches are distributed among these distances:
19 2 0.06
20 13 0.41
21 16 0.50
22 1 0.03
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (21 bp):
TAAATAAAATAATATTTTATT
Found at i:10177832 original size:25 final size:26
Alignment explanation
Indices: 10177804--10177854 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
10177794 GCATTTGTAG
10177804 TAAATATT-ATTTTATTTAAA-TTTAT
1 TAAAT-TTAATTTTATTTAAAGTTTAT
10177829 TAAATTTAATTTTATTTAAAGTTTAT
1 TAAATTTAATTTTATTTAAAGTTTAT
10177855 AAGTGACTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 2 0.08
25 17 0.71
26 5 0.21
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (26 bp):
TAAATTTAATTTTATTTAAAGTTTAT
Found at i:10179781 original size:30 final size:31
Alignment explanation
Indices: 10179747--10179806 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
10179737 AAGTTTTTAT
* *
10179747 CTTTTACTTTGTA-TTAAATAAGCCCTTAAA
1 CTTTTACTTTGCACATAAATAAGCCCTTAAA
*
10179777 CTTTTAGTTTGCACATAAATAAGCCCTTAA
1 CTTTTACTTTGCACATAAATAAGCCCTTAA
10179807 TATAAATTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.40
Consensus pattern (31 bp):
CTTTTACTTTGCACATAAATAAGCCCTTAAA
Found at i:10186686 original size:12 final size:13
Alignment explanation
Indices: 10186664--10186711 Score: 57
Period size: 12 Copynumber: 3.9 Consensus size: 13
10186654 TAATCATGCA
10186664 AAAATAC-TAAA-
1 AAAATACATAAAT
*
10186675 AAAACACATAAAT
1 AAAATACATAAAT
10186688 AAAATAC-TAAAT
1 AAAATACATAAAT
*
10186700 AAAATAAATAAA
1 AAAATACATAAA
10186712 AAATACCAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
11 6 0.19
12 15 0.48
13 10 0.32
ACGTcount: A:0.73, C:0.08, G:0.00, T:0.19
Consensus pattern (13 bp):
AAAATACATAAAT
Found at i:10186696 original size:24 final size:22
Alignment explanation
Indices: 10186663--10186725 Score: 72
Period size: 24 Copynumber: 2.7 Consensus size: 22
10186653 TTAATCATGC
*
10186663 AAAAATACTAAAAAAACACATAA
1 AAAAATACTAAAAAAACAAAT-A
*
10186686 ATAAAATACTAAATAAAATAAATA
1 A-AAAATACTAAA-AAAACAAATA
*
10186710 AAAAATACCAAAAAAA
1 AAAAATACTAAAAAAA
10186726 TGACTCAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
22 4 0.11
23 11 0.31
24 13 0.37
25 7 0.20
ACGTcount: A:0.75, C:0.10, G:0.00, T:0.16
Consensus pattern (22 bp):
AAAAATACTAAAAAAACAAATA
Found at i:10186723 original size:11 final size:11
Alignment explanation
Indices: 10186663--10186726 Score: 58
Period size: 11 Copynumber: 5.5 Consensus size: 11
10186653 TTAATCATGC
10186663 AAAAATACTAA
1 AAAAATACTAA
*
10186674 AAAAACACATAA
1 AAAAATAC-TAA
10186686 ATAAAATACTAA
1 A-AAAATACTAA
*
10186698 ATAAAATA-AATA
1 A-AAAATACTA-A
*
10186710 AAAAATACCAA
1 AAAAATACTAA
10186721 AAAAAT
1 AAAAAT
10186727 GACTCAATTT
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
11 21 0.47
12 18 0.40
13 6 0.13
ACGTcount: A:0.73, C:0.09, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAAATACTAA
Found at i:10187872 original size:23 final size:26
Alignment explanation
Indices: 10187815--10187873 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 26
10187805 AATGGAGAAA
* *
10187815 GAAAGAAAAAACAATAGATAGACTAT
1 GAAATAAAAAACAATAGATAGAATAT
*
10187841 AAAATAAAAAA-AAT-GATA-AATAT
1 GAAATAAAAAACAATAGATAGAATAT
10187864 GAAATAAAAA
1 GAAATAAAAA
10187874 TTTGAAATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 13 0.45
24 4 0.14
25 3 0.10
26 9 0.31
ACGTcount: A:0.69, C:0.03, G:0.10, T:0.17
Consensus pattern (26 bp):
GAAATAAAAAACAATAGATAGAATAT
Found at i:10187879 original size:13 final size:13
Alignment explanation
Indices: 10187858--10187899 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
10187848 AAAAAATGAT
*
10187858 AAATATGAAATAA
1 AAATTTGAAATAA
10187871 AAATTTGAAATAA
1 AAATTTGAAATAA
10187884 AAA--TG-AATAA
1 AAATTTGAAATAA
10187894 AAATTT
1 AAATTT
10187900 TTACAATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
10 8 0.31
11 2 0.08
12 1 0.04
13 15 0.58
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (13 bp):
AAATTTGAAATAA
Found at i:10189418 original size:23 final size:23
Alignment explanation
Indices: 10189362--10189424 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 23
10189352 TGCTCGATAT
10189362 GATGAAAAAAATAAAAAGATAAAA
1 GATGAAAAAAA-AAAAAGATAAAA
* *
10189386 -ATTAATAAAAAGAAAAG-TGAAAA
1 GATGAA-AAAAAAAAAAGAT-AAAA
10189409 GATGAAAAAAAAAAAA
1 GATGAAAAAAAAAAAA
10189425 TATATATATA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
22 1 0.03
23 22 0.69
24 9 0.28
ACGTcount: A:0.75, C:0.00, G:0.13, T:0.13
Consensus pattern (23 bp):
GATGAAAAAAAAAAAAGATAAAA
Found at i:10196627 original size:59 final size:60
Alignment explanation
Indices: 10196562--10196806 Score: 203
Period size: 59 Copynumber: 4.0 Consensus size: 60
10196552 TACTTTTATA
*
10196562 CAAGAAAAATTGATACTTTCAATTTTTTCTTAAAAATATATTTTTT-AGAATTTTATTTT
1 CAAGAAAAATTGATACTTTCAATTTTTTCTTAAAAATATATTTTTTGAAAATTTTATTTT
* * *
10196621 TAAGAAAAATTGGTACTTTCAATTTTTT-TTCAAAAATATTTTTTTTGAAAATTTTATTTT
1 CAAGAAAAATTGATACTTTCAATTTTTTCTT-AAAAATATATTTTTTGAAAATTTTATTTT
* * * ** * * ** **
10196681 CAAAAAAAATTTATATTTTCAGCTTTTTC-TCAAAAT-TTTTTAAAATTTTTATTTTTATATTTT
1 CAAGAAAAATTGATACTTTCAATTTTTTCTTAAAAATATATTT----TTTGAAAATTT-TATTTT
* * *
10196744 CAAAAAAAATCGATACTTTCAA-TTTTTCTTTAAAAATATTTATTTTTTTGGAAATTTTATTTT
1 CAAGAAAAATTGATACTTTCAATTTTTTC-TTAAAAATA--TA-TTTTTTGAAAATTTTATTTT
10196807 AAAAAGATCA
Statistics
Matches: 146, Mismatches: 26, Indels: 24
0.74 0.13 0.12
Matches are distributed among these distances:
58 7 0.05
59 45 0.31
60 34 0.23
62 13 0.09
63 30 0.21
64 13 0.09
67 1 0.01
68 3 0.02
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.53
Consensus pattern (60 bp):
CAAGAAAAATTGATACTTTCAATTTTTTCTTAAAAATATATTTTTTGAAAATTTTATTTT
Found at i:10196663 original size:16 final size:16
Alignment explanation
Indices: 10196642--10196686 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
10196632 GGTACTTTCA
10196642 ATTTTTTTTCAAAAAT
1 ATTTTTTTTCAAAAAT
*
10196658 ATTTTTTTT-GAAAAT
1 ATTTTTTTTCAAAAAT
*
10196673 -TTTATTTTCAAAAA
1 ATTTTTTTTCAAAAA
10196687 AAATTTATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
14 7 0.28
15 9 0.36
16 9 0.36
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (16 bp):
ATTTTTTTTCAAAAAT
Found at i:10197390 original size:20 final size:21
Alignment explanation
Indices: 10197365--10197408 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
10197355 AAATTTTCAG
10197365 AAAAAATTACC-AAAAAT-TTA
1 AAAAAATT-CCTAAAAATCTTA
10197385 AAAAAATTCCTAAAAATCTTA
1 AAAAAATTCCTAAAAATCTTA
10197406 AAA
1 AAA
10197409 CCACTTTTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 2 0.09
20 14 0.64
21 6 0.27
ACGTcount: A:0.64, C:0.11, G:0.00, T:0.25
Consensus pattern (21 bp):
AAAAAATTCCTAAAAATCTTA
Found at i:10198063 original size:44 final size:44
Alignment explanation
Indices: 10198011--10198101 Score: 121
Period size: 44 Copynumber: 2.1 Consensus size: 44
10198001 ATAAACAAAA
* * *
10198011 CTCCTCTAAAT-AGAGGCTCAACGACTTTGGACAAATAAATAAGG
1 CTCCTCT-AATCAGAGGCTCAACAACTTTGAAAAAATAAATAAGG
* *
10198055 CTCCTCTAATCAGAGGCTCAATAACTTTGAAAAAATAAGTAAGG
1 CTCCTCTAATCAGAGGCTCAACAACTTTGAAAAAATAAATAAGG
10198099 CTC
1 CTC
10198102 ATCGACAATC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
43 3 0.07
44 38 0.93
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.24
Consensus pattern (44 bp):
CTCCTCTAATCAGAGGCTCAACAACTTTGAAAAAATAAATAAGG
Found at i:10206325 original size:15 final size:15
Alignment explanation
Indices: 10206301--10206337 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
10206291 TTATTTTGTT
*
10206301 AAATGTAATGAATGA
1 AAATGCAATGAATGA
*
10206316 GAATGCAATGAATGA
1 AAATGCAATGAATGA
10206331 AAATGCA
1 AAATGCA
10206338 TACATGCGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.51, C:0.05, G:0.22, T:0.22
Consensus pattern (15 bp):
AAATGCAATGAATGA
Found at i:10209695 original size:67 final size:65
Alignment explanation
Indices: 10209582--10209740 Score: 161
Period size: 67 Copynumber: 2.4 Consensus size: 65
10209572 CTTTTAACTT
*
10209582 AAAAATTTTTTTTTTGAGAA----TTTTATTTTTAAGAAAAATTAGTACTTCCAACTTTTCCTTA
1 AAAAATTTTTTTTTTGAAAATTTTTTTTATTTTTAAGAAAAATTAGTACTTCCAACTTTTCCTTA
* *
10209643 AAAAATTTTTTTTTTGAAAATTTTTTTTATATTTTCAA-AGAAAATT-GATACTTTCAACTTTTT
1 AAAAATTTTTTTTTTGAAAATTTTTTTTAT-TTTT-AAGA-AAAATTAG-TACTTCCAACTTTTC
10209706 CTTA
62 CTTA
* *
10209710 AAAATATATATTTTTT-AGAAATTTTATTTTA
1 AAAA-ATTTTTTTTTTGA-AAATTTT-TTTTA
10209741 AAGAGATCAT
Statistics
Matches: 82, Mismatches: 5, Indels: 14
0.81 0.05 0.14
Matches are distributed among these distances:
61 19 0.23
65 6 0.07
66 6 0.07
67 30 0.37
68 16 0.20
69 5 0.06
ACGTcount: A:0.36, C:0.07, G:0.05, T:0.52
Consensus pattern (65 bp):
AAAAATTTTTTTTTTGAAAATTTTTTTTATTTTTAAGAAAAATTAGTACTTCCAACTTTTCCTTA
Found at i:10214272 original size:14 final size:15
Alignment explanation
Indices: 10214248--10214277 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
10214238 CTTTTTCAAA
10214248 TTTCTTTTCTTTTTC
1 TTTCTTTTCTTTTTC
10214263 TTTC-TTTCTTTTTC
1 TTTCTTTTCTTTTTC
10214277 T
1 T
10214278 AGCACTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTCTTTTCTTTTTC
Found at i:10216638 original size:10 final size:10
Alignment explanation
Indices: 10216623--10216648 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
10216613 TTAATAAAAA
10216623 AAAAAAAATG
1 AAAAAAAATG
10216633 AAAAAAAATG
1 AAAAAAAATG
10216643 AAAAAA
1 AAAAAA
10216649 TAAAAAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.08, T:0.08
Consensus pattern (10 bp):
AAAAAAAATG
Found at i:10217710 original size:13 final size:13
Alignment explanation
Indices: 10217690--10217720 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
10217680 ATTTATTTTC
10217690 AATAAAAAACTAAA
1 AATAAAAAA-TAAA
10217704 AATAAAAAATAAA
1 AATAAAAAATAAA
10217717 AATA
1 AATA
10217721 TTAGTAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (13 bp):
AATAAAAAATAAA
Found at i:10217898 original size:199 final size:200
Alignment explanation
Indices: 10217529--10217899 Score: 443
Period size: 199 Copynumber: 1.9 Consensus size: 200
10217519 TAAAAAAAAT
* * * * *
10217529 ATTTTTGAGAATAAATATTAATTATCCAATGATGAAATTTATAGAAATTTTAAATGGTAAATCTT
1 ATTTTTGAGAATAAATACTAATTACCCAATGATGAAATTCATAGAAATGTCAAATGGTAAATCTT
* * * *
10217594 TATAAAATTCCTAGGTGAAAAATTTTCTTTAAATTTGTCCCAAATGGTGGAATAATTTAAATAAA
66 TATAAAATTCCTAGATGAAAAATTTTCTCTAAATTTGTCCCAAATAGTGAAATAATTTAAATAAA
* * *
10217659 ATTTCAACAACAATAATTAATATTTATTTTCAATAAAAAACTAAAAATAAAAAATAAAAATATTA
131 ATTTCAACAAAAATAATTAATATTTATTTTAAAAAAAAAACTAAAAATAAAAAATAAAAATATTA
10217724 GTAAA
196 GTAAA
* * *
10217729 ATTTTT-AGAATTAAATACTAGTTACCCTATGATGAGATTCATAGAAATGTCAAATGGTAAAT-T
1 ATTTTTGAGAA-TAAATACTAATTACCCAATGATGAAATTCATAGAAATGTCAAATGGTAAATCT
*
10217792 TCT-TAAGAA-TCTCTAGAT-AAGAAA-TTTCTCTAAATTTGTCCCAAATAGTGAAATAATTTAG
65 T-TATAA-AATTC-CTAGATGAA-AAATTTTCTCTAAATTTGTCCCAAATAGTGAAATAATTTAA
* * * *
10217853 ATGAAATTTTAATAAAAATAA-TAGTATTCT-TTTCTAAAAAAAAAACT
126 ATAAAATTTCAACAAAAATAATTAATATT-TATTT-TAAAAAAAAAACT
10217900 TTGGGTTGAA
Statistics
Matches: 144, Mismatches: 20, Indels: 15
0.80 0.11 0.08
Matches are distributed among these distances:
198 9 0.06
199 75 0.52
200 60 0.42
ACGTcount: A:0.46, C:0.08, G:0.09, T:0.36
Consensus pattern (200 bp):
ATTTTTGAGAATAAATACTAATTACCCAATGATGAAATTCATAGAAATGTCAAATGGTAAATCTT
TATAAAATTCCTAGATGAAAAATTTTCTCTAAATTTGTCCCAAATAGTGAAATAATTTAAATAAA
ATTTCAACAAAAATAATTAATATTTATTTTAAAAAAAAAACTAAAAATAAAAAATAAAAATATTA
GTAAA
Found at i:10221865 original size:14 final size:14
Alignment explanation
Indices: 10221846--10221878 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
10221836 GATAGAAATT
10221846 AAAAAAAGTA-AAAA
1 AAAAAAAG-AGAAAA
10221860 AAAAAAAGAGAAAA
1 AAAAAAAGAGAAAA
10221874 AAAAA
1 AAAAA
10221879 TGAATGCCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 1 0.06
14 17 0.94
ACGTcount: A:0.88, C:0.00, G:0.09, T:0.03
Consensus pattern (14 bp):
AAAAAAAGAGAAAA
Found at i:10222255 original size:8 final size:8
Alignment explanation
Indices: 10222242--10222307 Score: 71
Period size: 8 Copynumber: 7.9 Consensus size: 8
10222232 ACAATGAAAG
10222242 AAAAAATA
1 AAAAAATA
10222250 AAAAAATA
1 AAAAAATA
*
10222258 AAAAAATG
1 AAAAAATA
10222266 AAAAAATGA
1 AAAAAAT-A
10222275 AAAAAA-A
1 AAAAAATA
10222282 TAAAAAATGA
1 -AAAAAAT-A
*
10222292 AAAAAAAA
1 AAAAAATA
10222300 AGAAAAAT
1 A-AAAAAT
10222308 GAAAGAGTGG
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
7 1 0.02
8 30 0.61
9 17 0.35
10 1 0.02
ACGTcount: A:0.83, C:0.00, G:0.06, T:0.11
Consensus pattern (8 bp):
AAAAAATA
Found at i:10222262 original size:17 final size:18
Alignment explanation
Indices: 10222242--10222311 Score: 94
Period size: 18 Copynumber: 4.1 Consensus size: 18
10222232 ACAATGAAAG
10222242 AAAAAATAAAAAAAT--A
1 AAAAAATAAAAAAATGAA
*
10222258 AAAAAATGAAAAAATGAA
1 AAAAAATAAAAAAATGAA
10222276 AAAAAAT-AAAAAATGAA
1 AAAAAATAAAAAAATGAA
10222293 AAAAAA-AAGAAAAATGAA
1 AAAAAATAA-AAAAATGAA
10222311 A
1 A
10222312 GAGTGGAAAA
Statistics
Matches: 49, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
16 14 0.29
17 17 0.35
18 18 0.37
ACGTcount: A:0.83, C:0.00, G:0.07, T:0.10
Consensus pattern (18 bp):
AAAAAATAAAAAAATGAA
Found at i:10222270 original size:25 final size:25
Alignment explanation
Indices: 10222241--10222300 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
10222231 AACAATGAAA
10222241 GAAAAAATAAAAAAATA-AAAAAAT
1 GAAAAAATAAAAAAATATAAAAAAT
10222265 GAAAAAATGAAAAAAA-ATAAAAAAT
1 GAAAAAAT-AAAAAAATATAAAAAAT
10222290 GAAAAAA-AAAA
1 GAAAAAATAAAA
10222301 GAAAAATGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
23 4 0.12
24 9 0.26
25 21 0.62
ACGTcount: A:0.83, C:0.00, G:0.07, T:0.10
Consensus pattern (25 bp):
GAAAAAATAAAAAAATATAAAAAAT
Found at i:10223620 original size:22 final size:22
Alignment explanation
Indices: 10223588--10223691 Score: 97
Period size: 22 Copynumber: 4.9 Consensus size: 22
10223578 TTGTGAATCC
10223588 TCAAATGAGAATCTTTGAGTTT
1 TCAAATGAGAATCTTTGAGTTT
* * * *
10223610 TCACATGAGAATTTTTTATTTT
1 TCAAATGAGAATCTTTGAGTTT
** *
10223632 TTTAATGAGAATCTTTGA-CTT
1 TCAAATGAGAATCTTTGAGTTT
* *
10223653 TCAAATAAAAATCTTTGAG-TT
1 TCAAATGAGAATCTTTGAGTTT
*
10223674 TCAAATG-GAAACTTTGAG
1 TCAAATGAGAATCTTTGAG
10223692 ACGTAAAACT
Statistics
Matches: 64, Mismatches: 17, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
20 9 0.14
21 24 0.38
22 31 0.48
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (22 bp):
TCAAATGAGAATCTTTGAGTTT
Found at i:10223782 original size:44 final size:44
Alignment explanation
Indices: 10223732--10223889 Score: 124
Period size: 44 Copynumber: 3.5 Consensus size: 44
10223722 ATCTATGGAT
*
10223732 TTGAATGAGAAGCTTTGAACTTAGATGTGAAACTCTAAGATTTA
1 TTGAATGAGAATCTTTGAACTTAGATGTGAAACTCTAAGATTTA
* * * * *
10223776 TCGAATGTGAATATTCGAACTCAATTTTTGGATGTGAATA-TCTAA-ATTT-
1 TTGAATGAGAATCTTTGAA--C-----TTAGATGTGAA-ACTCTAAGATTTA
* * *
10223825 TTGAATGAAAACCTTTGAACTTAGATGTAAAACTCTAAGATTTA
1 TTGAATGAGAATCTTTGAACTTAGATGTGAAACTCTAAGATTTA
* *
10223869 TTAAATGGGAATCTTTGAACT
1 TTGAATGAGAATCTTTGAACT
10223890 CAAATAAGGA
Statistics
Matches: 85, Mismatches: 18, Indels: 22
0.68 0.14 0.18
Matches are distributed among these distances:
41 1 0.01
42 14 0.16
43 4 0.05
44 31 0.36
46 1 0.01
47 1 0.01
49 13 0.15
50 4 0.05
51 15 0.18
52 1 0.01
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.37
Consensus pattern (44 bp):
TTGAATGAGAATCTTTGAACTTAGATGTGAAACTCTAAGATTTA
Found at i:10224208 original size:31 final size:31
Alignment explanation
Indices: 10224148--10224208 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
10224138 TCTTGCATAT
*
10224148 CTGAAATTTTGCAAATCAAATTCTTGTGAAA
1 CTGAAATTTTGCAAATCAAATTCTGGTGAAA
10224179 CTGAAATTTTG-AGAATCAATATT-TGGTGAA
1 CTGAAATTTTGCA-AATCAA-ATTCTGGTGAA
10224209 TTCTTGCAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
30 1 0.04
31 23 0.85
32 3 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (31 bp):
CTGAAATTTTGCAAATCAAATTCTGGTGAAA
Found at i:10224277 original size:15 final size:15
Alignment explanation
Indices: 10224257--10224286 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
10224247 TTGTGAGAAT
10224257 CTTTGAATTGTGAAC
1 CTTTGAATTGTGAAC
*
10224272 CTTTGAATTTTGAAC
1 CTTTGAATTGTGAAC
10224287 TCAAATTATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.43
Consensus pattern (15 bp):
CTTTGAATTGTGAAC
Found at i:10224423 original size:43 final size:43
Alignment explanation
Indices: 10224369--10224622 Score: 268
Period size: 43 Copynumber: 5.9 Consensus size: 43
10224359 ATCAAGGAGC
10224369 TTTATTTTTCAAAGTCT-TTGAGCCTCTGTTTAGAGGAGCATTA
1 TTTATTTTTCAAAGT-TGTTGAGCCTCTGTTTAGAGGAGCATTA
*
10224412 TTTATTTTTCAAAGTTGTTGAG-CTGCTATTTAGAAGGAGCATTA
1 TTTATTTTTCAAAGTTGTTGAGCCT-CTGTTTAG-AGGAGCATTA
** * *
10224456 TTTATTTTTCAAAGTTGTTGAGTTTCTGTTTAGATGAGTATTA
1 TTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCATTA
* * * * * *
10224499 TTTATTTTTTAAAATTGTTGAGCCACTGATTAGAGGAGCTTTG
1 TTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCATTA
* * *
10224542 TTTATTTTTTCAAAGTTGTTGAACCTTTGATTAGAGGAGC--TA
1 TTTA-TTTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCATTA
*
10224584 TTTATTTTCTCAAAGTCATG-T-AGCCTCTATTTAGAGGAG
1 TTTATTTT-TCAAAGT--TGTTGAGCCTCTGTTTAGAGGAG
10224623 TTTTTAGGAA
Statistics
Matches: 178, Mismatches: 25, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
41 4 0.02
42 29 0.16
43 73 0.41
44 71 0.40
45 1 0.01
ACGTcount: A:0.25, C:0.10, G:0.19, T:0.45
Consensus pattern (43 bp):
TTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCATTA
Found at i:10224468 original size:87 final size:86
Alignment explanation
Indices: 10224369--10224599 Score: 272
Period size: 87 Copynumber: 2.7 Consensus size: 86
10224359 ATCAAGGAGC
10224369 TTTATTTTTCAAAGTCT-TTGAGCCTCTGTTTAGAGGAGCATTATTTATTTTTCAAAGTTGTTGA
1 TTTATTTTTCAAAGT-TGTTGAGCCTCTGTTTAGAGGAGCATTATTTATTTTTCAAAGTTGTTGA
**
10224433 GCTGCT-ATTTAGAAGGAGCATTA
65 GCCACTGA-TTAG-AGGAGCATTA
** * * * *
10224456 TTTATTTTTCAAAGTTGTTGAGTTTCTGTTTAGATGAGTATTATTTATTTTTTAAAATTGTTGAG
1 TTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCATTATTTATTTTTCAAAGTTGTTGAG
* *
10224521 CCACTGATTAGAGGAGCTTTG
66 CCACTGATTAGAGGAGCATTA
* * *
10224542 TTTATTTTTTCAAAGTTGTTGAACCTTTGATTAGAGGAGC--TATTTATTTTCTCAAAGT
1 TTTA-TTTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCATTATTTATTTT-TCAAAGT
10224600 CATGTAGCCT
Statistics
Matches: 121, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
85 10 0.08
86 18 0.15
87 92 0.76
88 1 0.01
ACGTcount: A:0.25, C:0.10, G:0.19, T:0.47
Consensus pattern (86 bp):
TTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCATTATTTATTTTTCAAAGTTGTTGAG
CCACTGATTAGAGGAGCATTA
Found at i:10225181 original size:31 final size:31
Alignment explanation
Indices: 10225146--10225214 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
10225136 ATATTTTCAG
* *
10225146 TTTTTGGTGAATTTTTTAACGTCGATTGAAT
1 TTTTTGGTGAACTTTTTAACATCGATTGAAT
* *
10225177 TTTTTGGTGAACTTTTTGACATCGGTTGAAT
1 TTTTTGGTGAACTTTTTAACATCGATTGAAT
10225208 TTTTTGG
1 TTTTTGG
10225215 CAAGAATTTC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.19, C:0.07, G:0.22, T:0.52
Consensus pattern (31 bp):
TTTTTGGTGAACTTTTTAACATCGATTGAAT
Found at i:10225699 original size:22 final size:23
Alignment explanation
Indices: 10225674--10225719 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
10225664 AGTTATGCCC
*
10225674 TATTTTGGTATTTTTA-TTATTT
1 TATTTTGGTATTTCTATTTATTT
*
10225696 TATTTTGTTATTTCTATTTATTT
1 TATTTTGGTATTTCTATTTATTT
10225719 T
1 T
10225720 TTCCATTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.17, C:0.02, G:0.07, T:0.74
Consensus pattern (23 bp):
TATTTTGGTATTTCTATTTATTT
Found at i:10228203 original size:2 final size:2
Alignment explanation
Indices: 10228191--10228220 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
10228181 TTTAATGCAA
*
10228191 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10228221 CCATGTGTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:10228984 original size:4 final size:4
Alignment explanation
Indices: 10228975--10229000 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
10228965 TATTATATTA
10228975 TAAT TAAT TAAT TAAT TAAT TAAT TA
1 TAAT TAAT TAAT TAAT TAAT TAAT TA
10229001 TAAAATTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
TAAT
Found at i:10229706 original size:2 final size:2
Alignment explanation
Indices: 10229699--10229726 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
10229689 CCCAAATCTC
10229699 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10229727 CTCAAGTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10232365 original size:17 final size:18
Alignment explanation
Indices: 10232328--10232366 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
10232318 GAAAATTTTA
*
10232328 GATTTTATGAAAAAGTAT
1 GATTTTATGAAAAAATAT
*
10232346 GATTTT-TGAAAAAATGT
1 GATTTTATGAAAAAATAT
10232363 GATT
1 GATT
10232367 CCCGTGATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (18 bp):
GATTTTATGAAAAAATAT
Found at i:10232511 original size:16 final size:17
Alignment explanation
Indices: 10232473--10232512 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
10232463 TATTACATAA
* *
10232473 CAAATAAAACAATTTGT
1 CAAATAAAAAAAATTGT
10232490 CAAATAAAAAAAATTG-
1 CAAATAAAAAAAATTGT
10232506 CAAATAA
1 CAAATAA
10232513 TGTGTTTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.62, C:0.10, G:0.05, T:0.23
Consensus pattern (17 bp):
CAAATAAAAAAAATTGT
Found at i:10232816 original size:65 final size:66
Alignment explanation
Indices: 10232712--10232898 Score: 178
Period size: 65 Copynumber: 2.8 Consensus size: 66
10232702 TTACTCATTT
* * * * * ** *
10232712 TAAACAAATTACAATAAACAATTATTACATTTAAATTCAAAGAAACACAGTAATTGAGATTTAA-
1 TAAAAAAATGACAATAAATAATTACTGCATTTAGCTTCAAAGAAACACAGTAATTGAGATTAAAG
*
10232776 T
66 C
* * ** * * * *
10232777 TTAAAAAATGACAATAAATAATTTCTGTGTTTAGCTTCAAAAAAACATAGTAGTTGATATTAAAG
1 TAAAAAAATGACAATAAATAATTACTGCATTTAGCTTCAAAGAAACACAGTAATTGAGATTAAAG
10232842 C
66 C
* * **
10232843 TAAAAAAATGACAATTAATAATTACTGCATTTAGTTTCAAAGAAATGCAGTAATTG
1 TAAAAAAATGACAATAAATAATTACTGCATTTAGCTTCAAAGAAACACAGTAATTG
10232899 GGTTTTATCA
Statistics
Matches: 93, Mismatches: 28, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
65 48 0.52
66 45 0.48
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.32
Consensus pattern (66 bp):
TAAAAAAATGACAATAAATAATTACTGCATTTAGCTTCAAAGAAACACAGTAATTGAGATTAAAG
C
Found at i:10233178 original size:23 final size:24
Alignment explanation
Indices: 10233140--10233188 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
10233130 ATGTTTTGCA
* *
10233140 TGTAGAACCCATAATCACATATTG
1 TGTAGAACCCACAATCAAATATTG
10233164 TGTAG-ACCCACAATCAAATATTG
1 TGTAGAACCCACAATCAAATATTG
10233187 TG
1 TG
10233189 ACTGTAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 18 0.78
24 5 0.22
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (24 bp):
TGTAGAACCCACAATCAAATATTG
Found at i:10236793 original size:26 final size:25
Alignment explanation
Indices: 10236764--10236821 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
10236754 AAGTTAAAAT
10236764 AATAAAAACTTTTT-ATAACTAAATGA
1 AATAAAAA-TTTTTCA-AACTAAATGA
*
10236790 AAT-AAAATTTTTGCAAAGTAAATGA
1 AATAAAAATTTTT-CAAACTAAATGA
10236815 AATAAAA
1 AATAAAA
10236822 TTGATTAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
24 5 0.18
25 16 0.57
26 7 0.25
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.31
Consensus pattern (25 bp):
AATAAAAATTTTTCAAACTAAATGA
Found at i:10237177 original size:26 final size:26
Alignment explanation
Indices: 10237115--10237178 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
10237105 TGACAAATAA
*
10237115 CACATAC--CATATTCAATCATAATG
1 CACATACAACATAATCAATCATAATG
* * *
10237139 CACATATACCATAATCAATCATAATT
1 CACATACAACATAATCAATCATAATG
*
10237165 CGCATACAACATAA
1 CACATACAACATAA
10237179 AACTCATATG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
24 6 0.19
26 26 0.81
ACGTcount: A:0.45, C:0.25, G:0.03, T:0.27
Consensus pattern (26 bp):
CACATACAACATAATCAATCATAATG
Found at i:10250073 original size:30 final size:30
Alignment explanation
Indices: 10250039--10250098 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
10250029 TTTCTTAAAT
10250039 CAAATCA-TTTCAAATTTTTAATTTTGAAAA
1 CAAATCACTTT-AAATTTTTAATTTTGAAAA
** *
10250069 CAAATCACTTTATTTTTTTATTTTTGAAAA
1 CAAATCACTTTAAATTTTTAATTTTGAAAA
10250099 TACATCTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 23 0.88
31 3 0.12
ACGTcount: A:0.38, C:0.10, G:0.03, T:0.48
Consensus pattern (30 bp):
CAAATCACTTTAAATTTTTAATTTTGAAAA
Found at i:10250190 original size:18 final size:18
Alignment explanation
Indices: 10250167--10250223 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 18
10250157 TTTTCTTATA
10250167 TTTAGGGTTTAGGTTAGG
1 TTTAGGGTTTAGGTTAGG
*
10250185 TTTAGGGTTCT-GGGTAGG
1 TTTAGGGTT-TAGGTTAGG
*
10250203 -TTAGGGTTTAGGTTTGG
1 TTTAGGGTTTAGGTTAGG
10250220 TTTA
1 TTTA
10250224 AGATTTAGGG
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
16 1 0.03
17 13 0.39
18 18 0.55
19 1 0.03
ACGTcount: A:0.14, C:0.02, G:0.39, T:0.46
Consensus pattern (18 bp):
TTTAGGGTTTAGGTTAGG
Found at i:10253225 original size:11 final size:10
Alignment explanation
Indices: 10253195--10253228 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
10253185 TTATTGAAAC
10253195 TTTATCTAAA
1 TTTATCTAAA
*
10253205 TTTTTCTAAA
1 TTTATCTAAA
10253215 TTTGATCTAAA
1 TTT-ATCTAAA
10253226 TTT
1 TTT
10253229 TCCTCATTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.32, C:0.09, G:0.03, T:0.56
Consensus pattern (10 bp):
TTTATCTAAA
Found at i:10253419 original size:12 final size:13
Alignment explanation
Indices: 10253404--10253457 Score: 53
Period size: 12 Copynumber: 4.4 Consensus size: 13
10253394 GCAAAATACT
10253404 TAAAAAAATAA-A
1 TAAAAAAATAACA
*
10253416 T-AAAGAATAACA
1 TAAAAAAATAACA
10253428 T-AAAAAATAACA
1 TAAAAAAATAACA
*
10253440 -AAATAAAATAAAA
1 TAAA-AAAATAACA
10253453 TAAAA
1 TAAAA
10253458 CCAAAATAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
11 8 0.23
12 15 0.43
13 9 0.26
14 3 0.09
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.17
Consensus pattern (13 bp):
TAAAAAAATAACA
Done.