Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 59 of 117
Found at i:10964566 original size:14 final size:14
Alignment explanation
Indices: 10964547--10964576 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
10964537 TTTTTATTCA
10964547 TTTTTATTTCAAAT
1 TTTTTATTTCAAAT
*
10964561 TTTTTATTTCATAT
1 TTTTTATTTCAAAT
10964575 TT
1 TT
10964577 ATCATTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTTATTTCAAAT
Found at i:10966027 original size:60 final size:58
Alignment explanation
Indices: 10965958--10966143 Score: 214
Period size: 60 Copynumber: 3.2 Consensus size: 58
10965948 TGACCTCTTT
* *
10965958 AAAATAAAATTTGAAAAAAAAATATTTTTAACAAAACGTTGAAAGTATCAATTTGCCTTG
1 AAAATAAAATTT-AAAAAAAAATATTTTTAAGAAAA-GTTGAAAGTATCAATTTTCCTTG
* * * *
10966018 AAAATAAAA--TAAAAAAAAATATTTTTGAGGAAAAGTTGGAAGTATCAATTTTTCTTA
1 AAAATAAAATTTAAAAAAAAATATTTTT-AAGAAAAGTTGAAAGTATCAATTTTCCTTG
* * * *
10966075 AAAATAAAATTATCAAGAAAAACATTTTTAAGGAAAAGTTGAAAGCATCAATTTTCCTTG
1 AAAATAAAATT-TAAAAAAAAATATTTTTAA-GAAAAGTTGAAAGTATCAATTTTCCTTG
*
10966135 AATATAAAA
1 AAAATAAAA
10966144 ACCTTCAAAT
Statistics
Matches: 106, Mismatches: 15, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
57 44 0.42
58 6 0.06
59 1 0.01
60 55 0.52
ACGTcount: A:0.51, C:0.07, G:0.11, T:0.31
Consensus pattern (58 bp):
AAAATAAAATTTAAAAAAAAATATTTTTAAGAAAAGTTGAAAGTATCAATTTTCCTTG
Found at i:10966202 original size:23 final size:23
Alignment explanation
Indices: 10966169--10966214 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
10966159 AAGGAAAAGT
*
10966169 TGAAAGTATGAATTTTTCTTATA
1 TGAAAGCATGAATTTTTCTTATA
*
10966192 TGAAAGCATGAGTTTTTCTTATA
1 TGAAAGCATGAATTTTTCTTATA
10966215 AAAAGATCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.46
Consensus pattern (23 bp):
TGAAAGCATGAATTTTTCTTATA
Found at i:10969158 original size:12 final size:12
Alignment explanation
Indices: 10969137--10969183 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
10969127 ATAATTAAGG
10969137 ATTA-TTTAATT
1 ATTATTTTAATT
10969148 ATTATTTTAATT
1 ATTATTTTAATT
*
10969160 TTTATATTTAATGT
1 ATTAT-TTTAAT-T
10969174 ATTATTTTAA
1 ATTATTTTAA
10969184 CAAAATTCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
11 4 0.13
12 11 0.35
13 11 0.35
14 5 0.16
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (12 bp):
ATTATTTTAATT
Found at i:10969410 original size:2 final size:2
Alignment explanation
Indices: 10969403--10969431 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
10969393 CACCAATACA
10969403 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10969432 ACCCTGTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10978504 original size:57 final size:57
Alignment explanation
Indices: 10978416--10978529 Score: 192
Period size: 57 Copynumber: 2.0 Consensus size: 57
10978406 ATGATATAAA
* * *
10978416 ATTTCAAGTAAAATTCTTGTCAACATATGTTATTGGTATATAACAACTTCAGAGGCC
1 ATTTCAAGCAAAATTCTTGTCAACATATGTTATTGGAATATAACAACTTCAAAGGCC
*
10978473 ATTTCAAGCAAAATTCTTGTCAACATATGTTATTGGAATATACCAACTTCAAAGGCC
1 ATTTCAAGCAAAATTCTTGTCAACATATGTTATTGGAATATAACAACTTCAAAGGCC
10978530 CTCGAAAAGT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (57 bp):
ATTTCAAGCAAAATTCTTGTCAACATATGTTATTGGAATATAACAACTTCAAAGGCC
Found at i:10978830 original size:189 final size:187
Alignment explanation
Indices: 10978500--10978877 Score: 508
Period size: 189 Copynumber: 2.0 Consensus size: 187
10978490 TGTCAACATA
* * * * * **
10978500 TGTTATTGGAATATACCAACTTCAAAGGCCCTCGAAAAGTTGATTGACCAGTAAACTTGGGGAAC
1 TGTTATTGGAATATACCAACTTCAAAGACCCTCAAAAAGCTGACTAACCAGTAAACTCAGGGAAC
* *
10978565 GACCTAGCATACTAACAAATTCATATTCAAAATAATACAAATTACAGCTCAACATGATAAACCAT
66 AACCTAGCATACTAACAAATTCATATTCAAAATAATACAAACTACAGCTCAACATGATAAACCAT
*
10978630 GGAATAGATCCATTCCTAACAAGGGGAAATCAAGTACACAATATAATACTATACCCT
131 GGAATAGATCCATTCCTAACAAGGGAAAATCAAGTACACAATATAATACTATACCCT
*
10978687 TGTTATTGGTATATATACCAACTTCAGAGACCCT-AAAGAAGCTGACTAACCAGTAAACTCAGGG
1 TGTTATTGG-A-ATATACCAACTTCAAAGACCCTCAAA-AAGCTGACTAACCAGTAAACTCAGGG
* ** ** * *
10978751 AACAATCTAGCATACTAACGTATTCATATTCAAAATGCTACAAACTACAGTTCAACGCT-ATAAA
63 AACAACCTAGCATACTAACAAATTCATATTCAAAATAATACAAACTACAGCTCAAC-ATGATAAA
* * * *
10978815 TCATTGAATAGATCCATTCCTAACAAGGGAAAATGAAGTTCACAATATAATACTATACCCT
127 CCATGGAATAGATCCATTCCTAACAAGGGAAAATCAAGTACACAATATAATACTATACCCT
10978876 TG
1 TG
10978878 GAATTTAGAT
Statistics
Matches: 165, Mismatches: 22, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
187 9 0.05
188 3 0.02
189 152 0.92
190 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.26
Consensus pattern (187 bp):
TGTTATTGGAATATACCAACTTCAAAGACCCTCAAAAAGCTGACTAACCAGTAAACTCAGGGAAC
AACCTAGCATACTAACAAATTCATATTCAAAATAATACAAACTACAGCTCAACATGATAAACCAT
GGAATAGATCCATTCCTAACAAGGGAAAATCAAGTACACAATATAATACTATACCCT
Found at i:10988226 original size:17 final size:17
Alignment explanation
Indices: 10988206--10988249 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
10988196 ATTTTTTTAG
*
10988206 TTTTTTAGTTTTTAAAA
1 TTTTTTAGTTTTAAAAA
* *
10988223 TTTTTAAATTTTAAAAA
1 TTTTTTAGTTTTAAAAA
*
10988240 TATTTTAGTT
1 TTTTTTAGTT
10988250 CTTCTAATAT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (17 bp):
TTTTTTAGTTTTAAAAA
Found at i:10989455 original size:19 final size:20
Alignment explanation
Indices: 10989431--10989566 Score: 68
Period size: 19 Copynumber: 6.7 Consensus size: 20
10989421 TCTACCAAAG
10989431 CCCTAAACCATAAAC-CTAA
1 CCCTAAACCATAAACTCTAA
*
10989450 CCCTAAATCATAAACTCTAA
1 CCCTAAACCATAAACTCTAA
*
10989470 ACCT-AA-CATTAAAC-CTTAA
1 CCCTAAACCA-TAAACTC-TAA
* * *
10989489 ACCTAAGCCTTAAATAAAACTCAAA
1 CCCTAAACC----AT-AAACTCTAA
**
10989514 CCCTAAACTTTAAACT-TAAA
1 CCCTAAACCATAAACTCT-AA
* * *
10989534 CCCTAAATCA-AATCTCGAA
1 CCCTAAACCATAAACTCTAA
10989553 CCCTAAACCATAAA
1 CCCTAAACCATAAA
10989567 TCAAAAACCT
Statistics
Matches: 87, Mismatches: 16, Indels: 27
0.67 0.12 0.21
Matches are distributed among these distances:
18 3 0.03
19 43 0.49
20 24 0.28
21 2 0.02
24 1 0.01
25 13 0.15
26 1 0.01
ACGTcount: A:0.47, C:0.29, G:0.01, T:0.22
Consensus pattern (20 bp):
CCCTAAACCATAAACTCTAA
Found at i:10989489 original size:26 final size:25
Alignment explanation
Indices: 10989434--10989494 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 25
10989424 ACCAAAGCCC
* *
10989434 TAAACCATAAACCTAACCCTAAATCA
1 TAAACC-TAAACCTAACACTAAACCA
* *
10989460 TAAACTCTAAACCTAACATTAAACCT
1 TAAAC-CTAAACCTAACACTAAACCA
10989486 TAAACCTAA
1 TAAACCTAA
10989495 GCCTTAAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 4 0.13
26 25 0.83
27 1 0.03
ACGTcount: A:0.49, C:0.28, G:0.00, T:0.23
Consensus pattern (25 bp):
TAAACCTAAACCTAACACTAAACCA
Found at i:10989622 original size:7 final size:7
Alignment explanation
Indices: 10989612--10989682 Score: 51
Period size: 7 Copynumber: 10.6 Consensus size: 7
10989602 AAACTCTAAC
10989612 AAACTCT
1 AAACTCT
10989619 AAACTCT
1 AAACTCT
*
10989626 AAACTTT
1 AAACTCT
*
10989633 AAAC-CAA
1 AAACTC-T
10989640 AAAC-CT
1 AAACTCT
*
10989646 AAA-TCC
1 AAACTCT
*
10989652 AAACCCT
1 AAACTCT
10989659 -AACTCT
1 AAACTCT
*
10989665 AAACCCT
1 AAACTCT
*
10989672 AAAATCT
1 AAACTCT
10989679 AAAC
1 AAAC
10989683 CAAAATCCTA
Statistics
Matches: 48, Mismatches: 12, Indels: 8
0.71 0.18 0.12
Matches are distributed among these distances:
6 12 0.25
7 36 0.75
ACGTcount: A:0.49, C:0.30, G:0.00, T:0.21
Consensus pattern (7 bp):
AAACTCT
Found at i:10993861 original size:14 final size:14
Alignment explanation
Indices: 10993842--10993876 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
10993832 AAAGCCAAAA
10993842 TTCTTTTCTATTAT
1 TTCTTTTCTATTAT
*
10993856 TTCTTTTCTCTTAT
1 TTCTTTTCTATTAT
*
10993870 TTATTTT
1 TTCTTTT
10993877 TTCTAACATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.74
Consensus pattern (14 bp):
TTCTTTTCTATTAT
Found at i:10995109 original size:29 final size:28
Alignment explanation
Indices: 10995077--10995156 Score: 83
Period size: 29 Copynumber: 2.8 Consensus size: 28
10995067 AATTTTCATA
10995077 TATTAATTTAAATTATTAATATTATAA-AT
1 TATTAATTTAAATTATTAATA--ATAATAT
* *
10995106 TATTAATATAAATGA-TAATAATAATAT
1 TATTAATTTAAATTATTAATAATAATAT
* *
10995133 TATTAATATGATATTATTAATAAT
1 TATTAAT-TTAAATTATTAATAAT
10995157 TAATTATATA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 4 0.10
27 9 0.21
28 9 0.21
29 20 0.48
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (28 bp):
TATTAATTTAAATTATTAATAATAATAT
Found at i:10995135 original size:43 final size:43
Alignment explanation
Indices: 10995088--10995172 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
10995078 ATTAATTTAA
*
10995088 ATTATTAATATTATAAATTATTAAT-ATAAATGATA-ATAATAAT
1 ATTATTAATATGAT--ATTATTAATAATAAATGATATATAATAAT
* *
10995131 ATTATTAATATGATATTATTAATAATTAATTATATATAATAA
1 ATTATTAATATGATATTATTAATAATAAATGATATATAATAA
10995173 AAGCTATTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
41 9 0.24
42 8 0.22
43 20 0.54
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (43 bp):
ATTATTAATATGATATTATTAATAATAAATGATATATAATAAT
Found at i:10995141 original size:9 final size:9
Alignment explanation
Indices: 10995084--10995141 Score: 50
Period size: 9 Copynumber: 6.8 Consensus size: 9
10995074 ATATATTAAT
10995084 TTAA-ATTA
1 TTAATATTA
10995092 TTAATATTA
1 TTAATATTA
10995101 -TAA-ATTA
1 TTAATATTA
*
10995108 TTAATATAA
1 TTAATATTA
* * *
10995117 ATGATAATA
1 TTAATATTA
*
10995126 ATAATATTA
1 TTAATATTA
10995135 TTAATAT
1 TTAATAT
10995142 GATATTATTA
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
7 4 0.10
8 10 0.26
9 25 0.64
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (9 bp):
TTAATATTA
Found at i:10995403 original size:19 final size:20
Alignment explanation
Indices: 10995370--10995426 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
10995360 TTCATTAATC
10995370 TCAATTATCACATCAATAAA-
1 TCAA-TATCACATCAATAAAG
* *
10995390 TCAATATCATATCATTAAAG
1 TCAATATCACATCAATAAAG
**
10995410 TCAATGCCACATCAATA
1 TCAATATCACATCAATA
10995427 TGATCAATGG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
19 13 0.43
20 17 0.57
ACGTcount: A:0.46, C:0.21, G:0.04, T:0.30
Consensus pattern (20 bp):
TCAATATCACATCAATAAAG
Found at i:10997910 original size:61 final size:62
Alignment explanation
Indices: 10997818--10997979 Score: 186
Period size: 61 Copynumber: 2.6 Consensus size: 62
10997808 TTACAAGGGT
* * * * * *
10997818 ATTTTTATAACTATGATACAAAAG-ACATTATAATAATTTTGGTCAATTAT-AGTAATAAAAGC
1 ATTTTCATAATTATGATA-AAAAGAATATTATAATAATTTTGATCAATTATGA-TAAAAAAAAC
* ** *
10997880 ATTTTCGTAATTATGAT-AGGAGAATATTATAATAATTTTGATCAATTATGATAAAAAAAAT
1 ATTTTCATAATTATGATAAAAAGAATATTATAATAATTTTGATCAATTATGATAAAAAAAAC
*
10997941 ATTTTCATAATTATGATAAAAAGAGTATTATAATAATTT
1 ATTTTCATAATTATGATAAAAAGAATATTATAATAATTT
10997980 AGCCAAAAAA
Statistics
Matches: 83, Mismatches: 14, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
60 3 0.04
61 47 0.57
62 33 0.40
ACGTcount: A:0.46, C:0.05, G:0.10, T:0.40
Consensus pattern (62 bp):
ATTTTCATAATTATGATAAAAAGAATATTATAATAATTTTGATCAATTATGATAAAAAAAAC
Found at i:10997969 original size:26 final size:26
Alignment explanation
Indices: 10997914--10997978 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
10997904 TATTATAATA
*
10997914 ATTTTGATCAATTATGATAAAAAAAAT
1 ATTTTAAT-AATTATGATAAAAAAAAT
* * *
10997941 ATTTTCATAATTATGATAAAAAGAGT
1 ATTTTAATAATTATGATAAAAAAAAT
*
10997967 ATTATAATAATT
1 ATTTTAATAATT
10997979 TAGCCAAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
26 26 0.79
27 7 0.21
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.40
Consensus pattern (26 bp):
ATTTTAATAATTATGATAAAAAAAAT
Found at i:10998656 original size:6 final size:5
Alignment explanation
Indices: 10998598--10998664 Score: 73
Period size: 5 Copynumber: 12.6 Consensus size: 5
10998588 ATGAGTGTAT
*
10998598 GAAAA GAAAA GAAAA GAAAA CCATACAA GAAAA GAAGAA GAAAA GAAAA
1 GAAAA GAAAA GAAAA GAAAA -GA-A-AA GAAAA GAA-AA GAAAA GAAAA
10998647 GAAAA GGAAAA -AAAA GAA
1 GAAAA -GAAAA GAAAA GAA
10998665 TAAAAATAGA
Statistics
Matches: 54, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
4 4 0.07
5 34 0.63
6 12 0.22
7 2 0.04
8 2 0.04
ACGTcount: A:0.75, C:0.04, G:0.19, T:0.01
Consensus pattern (5 bp):
GAAAA
Found at i:11009695 original size:17 final size:15
Alignment explanation
Indices: 11009657--11009687 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
11009647 CCATACGTCC
11009657 AAATATAAACCAATT
1 AAATATAAACCAATT
11009672 AAATATAAACCAATT
1 AAATATAAACCAATT
11009687 A
1 A
11009688 TCAATATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.13, G:0.00, T:0.26
Consensus pattern (15 bp):
AAATATAAACCAATT
Found at i:11010374 original size:8 final size:8
Alignment explanation
Indices: 11010361--11010395 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
11010351 ACTGACAAAA
11010361 TATATGAT
1 TATATGAT
11010369 TATATGAT
1 TATATGAT
*
11010377 TATAGGAT
1 TATATGAT
11010385 TATATGAT
1 TATATGAT
11010393 TAT
1 TAT
11010396 TTTACTCACA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (8 bp):
TATATGAT
Found at i:11011921 original size:20 final size:20
Alignment explanation
Indices: 11011879--11011924 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
11011869 TAAAACTTTT
* * **
11011879 AAAAAATTTTAAAACTTTTA
1 AAAAAATATTAAAAATTCAA
11011899 AAAAAATATTAAAAATTCAA
1 AAAAAATATTAAAAATTCAA
11011919 AAAAAA
1 AAAAAA
11011925 AATCTTCAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.28
Consensus pattern (20 bp):
AAAAAATATTAAAAATTCAA
Found at i:11011923 original size:22 final size:22
Alignment explanation
Indices: 11011898--11011944 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
11011888 TAAAACTTTT
*
11011898 AAAAAAATATTAAAAATTCAAA
1 AAAAAAATATTAAAAATCCAAA
* *
11011920 AAAAAAATCTTCAAAATCCAAA
1 AAAAAAATATTAAAAATCCAAA
11011942 AAA
1 AAA
11011945 TTCAAAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.70, C:0.11, G:0.00, T:0.19
Consensus pattern (22 bp):
AAAAAAATATTAAAAATCCAAA
Found at i:11012001 original size:17 final size:17
Alignment explanation
Indices: 11011957--11012032 Score: 75
Period size: 17 Copynumber: 4.5 Consensus size: 17
11011947 CAAAAATTTT
*
11011957 TCTTGAAAAATTAAAAAA
1 TCTT-AAAAATTGAAAAA
*
11011975 T-TCAAGAAATTGAAAAA
1 TCTTAA-AAATTGAAAAA
* * *
11011992 TTTTTAAAATTTAAAAA
1 TCTTAAAAATTGAAAAA
11012009 TCTTAAAAATTGAAAAA
1 TCTTAAAAATTGAAAAA
11012026 -CTTAAAA
1 TCTTAAAA
11012033 TTTTTCAAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
16 9 0.19
17 36 0.75
18 3 0.06
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (17 bp):
TCTTAAAAATTGAAAAA
Found at i:11012014 original size:9 final size:8
Alignment explanation
Indices: 11011962--11012032 Score: 61
Period size: 8 Copynumber: 8.5 Consensus size: 8
11011952 ATTTTTCTTG
*
11011962 AAAAATTA
1 AAAAATTT
*
11011970 AAAAATTC
1 AAAAATTT
*
11011978 AAGAAATTG
1 AA-AAATTT
11011987 AAAAATTTT
1 AAAAA-TTT
*
11011996 TAAAATTT
1 AAAAATTT
11012004 AAAAATCTT
1 AAAAAT-TT
*
11012013 AAAAATTG
1 AAAAATTT
*
11012021 AAAAACTT
1 AAAAATTT
11012029 AAAA
1 AAAA
11012033 TTTTTCAAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
8 31 0.60
9 21 0.40
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (8 bp):
AAAAATTT
Found at i:11012128 original size:17 final size:17
Alignment explanation
Indices: 11012108--11012181 Score: 58
Period size: 17 Copynumber: 4.2 Consensus size: 17
11012098 AAATTTTGAA
11012108 TTTTTAAAAATTTAAAT
1 TTTTTAAAAATTTAAAT
** * *
11012125 TTTTTTGAATTTTAAAA
1 TTTTTAAAAATTTAAAT
**
11012142 TTTTTAGAATTTTTTAAAT
1 TTTTTA-AA-AATTTAAAT
*
11012161 TTTTTGAAAATTTGAAAT
1 TTTTTAAAAATTT-AAAT
11012179 TTT
1 TTT
11012182 CTTCTAATGT
Statistics
Matches: 43, Mismatches: 11, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
17 21 0.49
18 10 0.23
19 12 0.28
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.58
Consensus pattern (17 bp):
TTTTTAAAAATTTAAAT
Found at i:11012137 original size:26 final size:26
Alignment explanation
Indices: 11012101--11012181 Score: 85
Period size: 26 Copynumber: 3.0 Consensus size: 26
11012091 CAAATGAAAA
11012101 TTTTGAATTTTTAAAAATTTAAATTT
1 TTTTGAATTTTTAAAAATTTAAATTT
*
11012127 TTTTGAA-TTTTAAAATTTTTAGAA-TT
1 TTTTGAATTTTTAAAA-ATTTA-AATTT
* *
11012153 TTTTAAATTTTTTGAAAATTTGAAATTT
1 TTTTGAA-TTTTTAAAAATTT-AAATTT
11012181 T
1 T
11012182 CTTCTAATGT
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
25 8 0.18
26 19 0.42
27 7 0.16
28 11 0.24
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (26 bp):
TTTTGAATTTTTAAAAATTTAAATTT
Found at i:11012178 original size:18 final size:18
Alignment explanation
Indices: 11012095--11012181 Score: 65
Period size: 18 Copynumber: 4.9 Consensus size: 18
11012085 ATTTTTCAAA
11012095 TGAAAATTTTG-AA-TTTT
1 TGAAAA-TTTGAAATTTTT
*
11012112 TAAAAATTT-AAATTTTTT
1 TGAAAATTTGAAA-TTTTT
* *
11012130 TG-AATTTTAAAATTTTT
1 TGAAAATTTGAAATTTTT
* ** *
11012147 AGAATTTTTTAAATTTTT
1 TGAAAATTTGAAATTTTT
11012165 TGAAAATTTGAAATTTT
1 TGAAAATTTGAAATTTT
11012182 CTTCTAATGT
Statistics
Matches: 55, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
16 5 0.09
17 16 0.29
18 34 0.62
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (18 bp):
TGAAAATTTGAAATTTTT
Found at i:11015691 original size:3 final size:3
Alignment explanation
Indices: 11015679--11015726 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
11015669 AAAATTCAAA
11015679 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
11015726 T
1 T
11015727 GTTTTACTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.05
3 42 0.95
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:11020960 original size:13 final size:13
Alignment explanation
Indices: 11020942--11020972 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
11020932 TTATGAAAAT
*
11020942 ATTTTTTGTTTTC
1 ATTTTTTATTTTC
11020955 ATTTTTTATTTTC
1 ATTTTTTATTTTC
11020968 ATTTT
1 ATTTT
11020973 CTAAAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.13, C:0.06, G:0.03, T:0.77
Consensus pattern (13 bp):
ATTTTTTATTTTC
Found at i:11021733 original size:18 final size:18
Alignment explanation
Indices: 11021666--11021775 Score: 68
Period size: 18 Copynumber: 6.0 Consensus size: 18
11021656 TGCAAGAATG
*
11021666 TCATGCAAATATATTAATTT
1 TCATGCAAATATA-TAA-TA
* *
11021686 TGATGC-AATA-ATAACAA
1 TCATGCAAATATATAA-TA
*
11021703 TCATGTAAATATATAATA
1 TCATGCAAATATATAATA
*
11021721 TCATGCAAGTATAT--TA
1 TCATGCAAATATATAATA
*
11021737 TCATGC-AATAATATAAAA
1 TCATGCAAAT-ATATAATA
11021755 TGCCATGCAAATATATTAATA
1 T--CATGCAAATATA-TAATA
11021776 ACCATTCATG
Statistics
Matches: 69, Mismatches: 12, Indels: 17
0.70 0.12 0.17
Matches are distributed among these distances:
15 2 0.03
16 12 0.17
17 7 0.10
18 20 0.29
19 8 0.12
20 13 0.19
21 7 0.10
ACGTcount: A:0.46, C:0.11, G:0.08, T:0.35
Consensus pattern (18 bp):
TCATGCAAATATATAATA
Found at i:11021750 original size:16 final size:16
Alignment explanation
Indices: 11021714--11021744 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11021704 CATGTAAATA
*
11021714 TATAATATCATGCAAG
1 TATATTATCATGCAAG
11021730 TATATTATCATGCAA
1 TATATTATCATGCAA
11021745 TAATATAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (16 bp):
TATATTATCATGCAAG
Found at i:11022171 original size:19 final size:19
Alignment explanation
Indices: 11022092--11022165 Score: 58
Period size: 19 Copynumber: 3.5 Consensus size: 19
11022082 TGCAAATAAA
*
11022092 CATGCAATTAAATATATAAT
1 CATGCAA-TAAATATAAAAT
*
11022112 CATTCAATAACATATAATATCGTAT
1 CATGCAATAA-ATATAA-A----AT
*
11022137 CATGTAATAAATATAAAAT
1 CATGCAATAAATATAAAAT
11022156 CATGCAATAA
1 CATGCAATAA
11022166 TAATAATAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 13
0.70 0.08 0.21
Matches are distributed among these distances:
19 14 0.33
20 11 0.26
21 1 0.02
23 1 0.02
24 6 0.14
25 10 0.23
ACGTcount: A:0.50, C:0.12, G:0.05, T:0.32
Consensus pattern (19 bp):
CATGCAATAAATATAAAAT
Found at i:11022325 original size:22 final size:23
Alignment explanation
Indices: 11022297--11022342 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
11022287 ACATGCAATT
*
11022297 AAATATAT-AATCATACAAATAA
1 AAATATATAAACCATACAAATAA
*
11022319 AAATATATAAACCATATAAATAA
1 AAATATATAAACCATACAAATAA
11022342 A
1 A
11022343 TATGCAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (23 bp):
AAATATATAAACCATACAAATAA
Found at i:11022377 original size:29 final size:30
Alignment explanation
Indices: 11022344--11022404 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 30
11022334 ATAAATAAAT
*
11022344 ATGCAATTAAATATATAATTATGCAAA-AA
1 ATGCAATTAAATATATAATCATGCAAATAA
11022373 ATGCAATTAAATATATAATCATGCAAATAA
1 ATGCAATTAAATATATAATCATGCAAATAA
11022403 AT
1 AT
11022405 ATATTAATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 26 0.87
30 4 0.13
ACGTcount: A:0.54, C:0.08, G:0.07, T:0.31
Consensus pattern (30 bp):
ATGCAATTAAATATATAATCATGCAAATAA
Found at i:11022414 original size:24 final size:24
Alignment explanation
Indices: 11022387--11022531 Score: 142
Period size: 24 Copynumber: 6.2 Consensus size: 24
11022377 AATTAAATAT
11022387 ATAATCATGCAAATAAATATATTA
1 ATAATCATGCAAATAAATATATTA
* * *
11022411 ATAATCAAGTAATTAAATATATTA
1 ATAATCATGCAAATAAATATATTA
* *
11022435 ATAATCGTGC-AATCAAAT-TA-AA
1 ATAATCATGCAAAT-AAATATATTA
*
11022457 TATAATCATACAAATAAATATATTA
1 -ATAATCATGCAAATAAATATATTA
11022482 ATAATCATGC---T-AATATATTA
1 ATAATCATGCAAATAAATATATTA
**
11022502 ATAAATCACACAAATAAATATATTA
1 AT-AATCATGCAAATAAATATATTA
11022527 ATAAT
1 ATAAT
11022532 GTAAACAAAT
Statistics
Matches: 97, Mismatches: 14, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
20 11 0.11
21 7 0.07
22 1 0.01
23 16 0.16
24 50 0.52
25 12 0.12
ACGTcount: A:0.54, C:0.09, G:0.03, T:0.34
Consensus pattern (24 bp):
ATAATCATGCAAATAAATATATTA
Found at i:11022476 original size:47 final size:45
Alignment explanation
Indices: 11022424--11022531 Score: 155
Period size: 45 Copynumber: 2.4 Consensus size: 45
11022414 ATCAAGTAAT
* *
11022424 TAAATATATTAATAATCGTGC-AATCAAATTAAATATAATCATACAAA
1 TAAATATATTAATAATCATGCTAAT-AAATT-AATA-AATCACACAAA
*
11022471 TAAATATATTAATAATCATGCTAATATATTAATAAATCACACAAA
1 TAAATATATTAATAATCATGCTAATAAATTAATAAATCACACAAA
11022516 TAAATATATTAATAAT
1 TAAATATATTAATAAT
11022532 GTAAACAAAT
Statistics
Matches: 57, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
45 26 0.46
46 4 0.07
47 24 0.42
48 3 0.05
ACGTcount: A:0.54, C:0.09, G:0.03, T:0.34
Consensus pattern (45 bp):
TAAATATATTAATAATCATGCTAATAAATTAATAAATCACACAAA
Found at i:11022517 original size:21 final size:20
Alignment explanation
Indices: 11022472--11022517 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
11022462 TCATACAAAT
**
11022472 AAATATATTAATAATCATGC
1 AAATATATTAATAATCACAC
*
11022492 TAATATATTAATAAATCACAC
1 AAATATATTAAT-AATCACAC
11022513 AAATA
1 AAATA
11022518 AATATATTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.54, C:0.11, G:0.02, T:0.33
Consensus pattern (20 bp):
AAATATATTAATAATCACAC
Found at i:11022524 original size:45 final size:43
Alignment explanation
Indices: 11022402--11022531 Score: 154
Period size: 47 Copynumber: 2.9 Consensus size: 43
11022392 CATGCAAATA
* * *
11022402 AATATATTAAT-AATCAAGTAATTAAATATATTAATAATCGTGC
1 AATATATTAATAAATCAA-CAAATAAATATATTAATAATCATGC
*
11022445 AATCAAATTAAATATAATCATACAAATAAATATATTAATAATCATGC
1 AAT-ATATT-AATA-AATCA-ACAAATAAATATATTAATAATCATGC
11022492 TAATATATTAATAAATCACACAAATAAATATATTAATAAT
1 -AATATATTAATAAATCA-ACAAATAAATATATTAATAAT
11022532 GTAAACAAAT
Statistics
Matches: 75, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
43 3 0.04
44 4 0.05
45 29 0.39
46 4 0.05
47 31 0.41
48 4 0.05
ACGTcount: A:0.54, C:0.08, G:0.03, T:0.35
Consensus pattern (43 bp):
AATATATTAATAAATCAACAAATAAATATATTAATAATCATGC
Found at i:11023563 original size:43 final size:43
Alignment explanation
Indices: 11023489--11023767 Score: 312
Period size: 43 Copynumber: 6.5 Consensus size: 43
11023479 TCTTTAACAG
* * *
11023489 TTTGAAACTTTCGAAAAAATAAAATACTCCCTCATAACTGAGGC
1 TTTGAAACTTTTG-AAAAATAAAATGCTCCCCCATAACTGAGGC
* * * *
11023533 TTTGGAACTTTTGAAAAATAAAATGGTCCCTCATAATTGAGGC
1 TTTGAAACTTTTGAAAAATAAAATGCTCCCCCATAACTGAGGC
* * *
11023576 TTTGAAACTTTTGAAAAATAAAATGGTCCCCCATAATTGAAGC
1 TTTGAAACTTTTGAAAAATAAAATGCTCCCCCATAACTGAGGC
* * *
11023619 CTTGGAAC-TTTGAAAAATAAAATGCTCCCCCATAACTAAGGC
1 TTTGAAACTTTTGAAAAATAAAATGCTCCCCCATAACTGAGGC
* * * *
11023661 TTTGAAAC-TTTGAAAAAACAAAATGTTCCCCCATAATTGATGC
1 TTTGAAACTTTTG-AAAAATAAAATGCTCCCCCATAACTGAGGC
* * * * *
11023704 TTTGAAGCTTTTGAAAAATAAGATACTCCTCCACAACTGAGGC
1 TTTGAAACTTTTGAAAAATAAAATGCTCCCCCATAACTGAGGC
*
11023747 TTTGAAAC-TTTGAAAGATAAA
1 TTTGAAACTTTTGAAAAATAAA
11023768 GAACTCTTCC
Statistics
Matches: 200, Mismatches: 33, Indels: 6
0.84 0.14 0.03
Matches are distributed among these distances:
42 51 0.25
43 134 0.67
44 15 0.08
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (43 bp):
TTTGAAACTTTTGAAAAATAAAATGCTCCCCCATAACTGAGGC
Found at i:11023756 original size:128 final size:128
Alignment explanation
Indices: 11023489--11023767 Score: 353
Period size: 128 Copynumber: 2.2 Consensus size: 128
11023479 TCTTTAACAG
* * * *
11023489 TTTGAAACTTTCGAAAAAATAAAATACTCCCTCATAACTGAGGCTTTGGAACTTTTGAAAAATAA
1 TTTGAAACTTT-G-AAAAATAAAATACTCCCCCATAACTAAGGCTTTGAAACTTTTGAAAAACAA
* ** * *
11023554 AATGGTCCCTCATAATTGAGGCTTTGAAACTTTTGAAAAATAAAATGGTCCCCCATAATTGAAGC
64 AATGGTCCCCCATAATTGAGGCTTTGAAACTTTTGAAAAATAAAATACTCCCCCACAACTGAAGC
* * *
11023619 CTTGGAACTTTGAAAAATAAAATGCTCCCCCATAACTAAGGCTTTGAAAC-TTTGAAAAAACAAA
1 TTTGAAACTTTGAAAAATAAAATACTCCCCCATAACTAAGGCTTTGAAACTTTTG-AAAAACAAA
* * * * * *
11023683 ATGTTCCCCCATAATTGATGCTTTGAAGCTTTTGAAAAATAAGATACTCCTCCACAACTGAGGC
65 ATGGTCCCCCATAATTGAGGCTTTGAAACTTTTGAAAAATAAAATACTCCCCCACAACTGAAGC
*
11023747 TTTGAAACTTTGAAAGATAAA
1 TTTGAAACTTTGAAAAATAAA
11023768 GAACTCTTCC
Statistics
Matches: 127, Mismatches: 21, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
127 4 0.03
128 113 0.89
129 1 0.01
130 9 0.07
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (128 bp):
TTTGAAACTTTGAAAAATAAAATACTCCCCCATAACTAAGGCTTTGAAACTTTTGAAAAACAAAA
TGGTCCCCCATAATTGAGGCTTTGAAACTTTTGAAAAATAAAATACTCCCCCACAACTGAAGC
Found at i:11024083 original size:13 final size:13
Alignment explanation
Indices: 11024065--11024089 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11024055 TTCCAAACAT
11024065 ATGCAATGAATGC
1 ATGCAATGAATGC
11024078 ATGCAATGAATG
1 ATGCAATGAATG
11024090 AAAAGATTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (13 bp):
ATGCAATGAATGC
Found at i:11024427 original size:13 final size:13
Alignment explanation
Indices: 11024409--11024443 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
11024399 AATATGCATG
11024409 ATGAATGCAGTGA
1 ATGAATGCAGTGA
*
11024422 ATGAATACAGTGA
1 ATGAATGCAGTGA
11024435 ATGAATGCA
1 ATGAATGCA
11024444 ATATTCTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.43, C:0.09, G:0.26, T:0.23
Consensus pattern (13 bp):
ATGAATGCAGTGA
Found at i:11025021 original size:13 final size:13
Alignment explanation
Indices: 11025003--11025031 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
11024993 TGATCTATCA
11025003 CATTTCTTTAATT
1 CATTTCTTTAATT
11025016 CATTTCTTTAATT
1 CATTTCTTTAATT
11025029 CAT
1 CAT
11025032 CATGGAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.24, C:0.17, G:0.00, T:0.59
Consensus pattern (13 bp):
CATTTCTTTAATT
Found at i:11031299 original size:16 final size:16
Alignment explanation
Indices: 11031262--11031293 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
11031252 TAATGTAACT
*
11031262 GTATAATATCATGCAA
1 GTATATTATCATGCAA
11031278 GTATATTATCATGCAA
1 GTATATTATCATGCAA
11031294 TAATATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.34
Consensus pattern (16 bp):
GTATATTATCATGCAA
Found at i:11031475 original size:19 final size:19
Alignment explanation
Indices: 11031447--11031511 Score: 78
Period size: 19 Copynumber: 3.3 Consensus size: 19
11031437 ATATAATTAA
11031447 AATATAATAT-TAATCATGC
1 AATA-AATATATAATCATGC
11031466 AATAACATATATCATATCATGC
1 AATAA-ATATAT-A-ATCATGC
*
11031488 AATAAATATAAAATCATGC
1 AATAAATATATAATCATGC
11031507 AATAA
1 AATAA
11031512 TAATAAATAA
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
18 1 0.02
19 20 0.49
20 2 0.05
21 6 0.15
22 12 0.29
ACGTcount: A:0.52, C:0.12, G:0.05, T:0.31
Consensus pattern (19 bp):
AATAAATATATAATCATGC
Found at i:11031517 original size:19 final size:20
Alignment explanation
Indices: 11031458--11031518 Score: 72
Period size: 19 Copynumber: 3.0 Consensus size: 20
11031448 ATATAATATT
*
11031458 AATCATGCAATAACATATATCA
1 AATCATGCAAT-A-ATATATAA
*
11031480 TATCATGCAATAA-ATATAA
1 AATCATGCAATAATATATAA
11031499 AATCATGCAATAATA-ATAA
1 AATCATGCAATAATATATAA
11031518 A
1 A
11031519 TAAATAAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
19 22 0.63
20 2 0.06
21 1 0.03
22 10 0.29
ACGTcount: A:0.54, C:0.13, G:0.05, T:0.28
Consensus pattern (20 bp):
AATCATGCAATAATATATAA
Found at i:11031523 original size:22 final size:21
Alignment explanation
Indices: 11031453--11031523 Score: 74
Period size: 21 Copynumber: 3.4 Consensus size: 21
11031443 TTAAAATATA
* *
11031453 ATATTAATCATGCAATAACAT
1 ATATAAATCATGCAATAAAAT
*
11031474 ATATCATATCATGCAAT-AAAT
1 ATAT-AAATCATGCAATAAAAT
11031495 ATA-AAATCATGCAATAATAAT
1 ATATAAATCATGCAATAA-AAT
*
11031516 AAATAAAT
1 ATATAAAT
11031524 AAATAACTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
19 11 0.27
20 1 0.02
21 15 0.37
22 14 0.34
ACGTcount: A:0.54, C:0.11, G:0.04, T:0.31
Consensus pattern (21 bp):
ATATAAATCATGCAATAAAAT
Found at i:11031568 original size:32 final size:32
Alignment explanation
Indices: 11031532--11031594 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
11031522 ATAAATAACT
*
11031532 ATGCAAATAAATATATTAATAATCATACAATC
1 ATGCAAATAAATAAATTAATAATCATACAATC
*
11031564 ATGCAAATAAATAAATTAATAATCATGCAAT
1 ATGCAAATAAATAAATTAATAATCATACAAT
11031595 TAACAATGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.54, C:0.11, G:0.05, T:0.30
Consensus pattern (32 bp):
ATGCAAATAAATAAATTAATAATCATACAATC
Found at i:11031576 original size:24 final size:22
Alignment explanation
Indices: 11031549--11031619 Score: 56
Period size: 24 Copynumber: 3.1 Consensus size: 22
11031539 TAAATATATT
11031549 AATAATCATACAATCATGCAAATA
1 AATAAT-ATA-AATCATGCAAATA
*
11031573 AATAA-ATTAATAATCATGC-AATT
1 AATAATA-T-A-AATCATGCAAATA
* *
11031596 AACAATGTAAATCATGCAAATA
1 AATAATATAAATCATGCAAATA
11031618 AA
1 AA
11031620 CATGCAATTA
Statistics
Matches: 38, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
21 8 0.21
22 7 0.18
23 9 0.24
24 14 0.37
ACGTcount: A:0.55, C:0.13, G:0.06, T:0.27
Consensus pattern (22 bp):
AATAATATAAATCATGCAAATA
Found at i:11031643 original size:20 final size:20
Alignment explanation
Indices: 11031615--11031774 Score: 65
Period size: 20 Copynumber: 9.0 Consensus size: 20
11031605 AATCATGCAA
*
11031615 ATAAACATGCAATTAAATAT
1 ATAATCATGCAATTAAATAT
11031635 ATAATCATGC-----AA-AT
1 ATAATCATGCAATTAAATAT
*
11031649 A-AA-CATACAATTAAATAT
1 ATAATCATGCAATTAAATAT
* *
11031667 ATAATCATGCAAATAAA-AA
1 ATAATCATGCAATTAAATAT
** * **
11031686 ATATAT-AAACCA-TGCATAT
1 ATA-ATCATGCAATTAAATAT
11031705 A-AAT-ATGCAATTAAATAT
1 ATAATCATGCAATTAAATAT
11031723 ATAATCATGC-----AA-AT
1 ATAATCATGCAATTAAATAT
*
11031737 A-AA-CATGTAATTAAATAT
1 ATAATCATGCAATTAAATAT
*
11031755 ATAATCATGCAAATAAATAT
1 ATAATCATGCAATTAAATAT
11031775 GTAAATAATC
Statistics
Matches: 100, Mismatches: 19, Indels: 42
0.62 0.12 0.26
Matches are distributed among these distances:
12 8 0.08
13 4 0.04
14 6 0.06
15 4 0.04
17 9 0.09
18 15 0.15
19 16 0.16
20 38 0.38
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.29
Consensus pattern (20 bp):
ATAATCATGCAATTAAATAT
Found at i:11031646 original size:32 final size:32
Alignment explanation
Indices: 11031581--11031771 Score: 238
Period size: 32 Copynumber: 6.2 Consensus size: 32
11031571 TAAATAAATT
* *
11031581 AATAATCATGCAATTAACA-ATGTAAATCATGCA
1 AATAAACATGCAATTAA-ATATAT-AATCATGCA
11031614 AATAAACATGCAATTAAATATATAATCATGCA
1 AATAAACATGCAATTAAATATATAATCATGCA
*
11031646 AATAAACATACAATTAAATATATAATCATGCA
1 AATAAACATGCAATTAAATATATAATCATGCA
*
11031678 AATAAA-A---AA-T--ATATA-AACCATGCA
1 AATAAACATGCAATTAAATATATAATCATGCA
* *
11031702 TATAAATATGCAATTAAATATATAATCATGCA
1 AATAAACATGCAATTAAATATATAATCATGCA
*
11031734 AATAAACATGTAATTAAATATATAATCATGCA
1 AATAAACATGCAATTAAATATATAATCATGCA
11031766 AATAAA
1 AATAAA
11031772 TATGTAAATA
Statistics
Matches: 140, Mismatches: 9, Indels: 19
0.83 0.05 0.11
Matches are distributed among these distances:
24 13 0.09
25 6 0.04
27 1 0.01
28 4 0.03
29 1 0.01
31 6 0.04
32 90 0.64
33 19 0.14
ACGTcount: A:0.54, C:0.12, G:0.06, T:0.28
Consensus pattern (32 bp):
AATAAACATGCAATTAAATATATAATCATGCA
Found at i:11031690 original size:23 final size:24
Alignment explanation
Indices: 11031661--11031707 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
11031651 ACATACAATT
*
11031661 AAATATAT-AATCATGCAAATAAA
1 AAATATATAAACCATGCAAATAAA
*
11031684 AAATATATAAACCATGCATATAAA
1 AAATATATAAACCATGCAAATAAA
11031708 TATGCAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.60, C:0.11, G:0.04, T:0.26
Consensus pattern (24 bp):
AAATATATAAACCATGCAAATAAA
Found at i:11031707 original size:56 final size:55
Alignment explanation
Indices: 11031629--11031739 Score: 177
Period size: 56 Copynumber: 2.0 Consensus size: 55
11031619 ACATGCAATT
*
11031629 AAATATATAATCATGCAAATAAACATACAATTAAATATATAATCATGCAAATAAA
1 AAATATATAACCATGCAAATAAACATACAATTAAATATATAATCATGCAAATAAA
* * *
11031684 AAATATATAAACCATGCATATAAATATGCAATTAAATATATAATCATGCAAATAAA
1 AAATATAT-AACCATGCAAATAAACATACAATTAAATATATAATCATGCAAATAAA
11031740 CATGTAATTA
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
55 8 0.16
56 43 0.84
ACGTcount: A:0.57, C:0.11, G:0.05, T:0.28
Consensus pattern (55 bp):
AAATATATAACCATGCAAATAAACATACAATTAAATATATAATCATGCAAATAAA
Found at i:11031722 original size:88 final size:88
Alignment explanation
Indices: 11031603--11031771 Score: 293
Period size: 88 Copynumber: 1.9 Consensus size: 88
11031593 ATTAACAATG
*
11031603 TAAATCATGCAAATAAACATGCAATTAAATATATAATCATGCAAATAAACATACAATTAAATATA
1 TAAACCATGCAAATAAACATGCAATTAAATATATAATCATGCAAATAAACATACAATTAAATATA
11031668 TAATCATGCAAATAAAAAATATA
66 TAATCATGCAAATAAAAAATATA
* * **
11031691 TAAACCATGCATATAAATATGCAATTAAATATATAATCATGCAAATAAACATGTAATTAAATATA
1 TAAACCATGCAAATAAACATGCAATTAAATATATAATCATGCAAATAAACATACAATTAAATATA
11031756 TAATCATGCAAATAAA
66 TAATCATGCAAATAAA
11031772 TATGTAAATA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 76 1.00
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.28
Consensus pattern (88 bp):
TAAACCATGCAAATAAACATGCAATTAAATATATAATCATGCAAATAAACATACAATTAAATATA
TAATCATGCAAATAAAAAATATA
Found at i:11031795 original size:24 final size:24
Alignment explanation
Indices: 11031755--11031857 Score: 111
Period size: 24 Copynumber: 4.3 Consensus size: 24
11031745 AATTAAATAT
* * *
11031755 ATAATCATGCAAATAAATATGTAA
1 ATAATCATACAATTAAATATATAA
* *
11031779 ATAATCAAACAATTAAATATATTA
1 ATAATCATACAATTAAATATATAA
*
11031803 ATAATCATACAATCAAAT-TA-AA
1 ATAATCATACAATTAAATATATAA
* *
11031825 TATAATCATACAAATAAATATATTA
1 -ATAATCATACAATTAAATATATAA
11031850 ATAATCAT
1 ATAATCAT
11031858 GCGAATATAT
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
22 1 0.02
23 18 0.28
24 45 0.69
25 1 0.02
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.32
Consensus pattern (24 bp):
ATAATCATACAATTAAATATATAA
Found at i:11031843 original size:47 final size:46
Alignment explanation
Indices: 11031779--11031896 Score: 141
Period size: 47 Copynumber: 2.6 Consensus size: 46
11031769 AAATATGTAA
*
11031779 ATAATCAAACAATTAAATATATTAATAATCATAC-AATCAAATTAAAT
1 ATAATCAAACAAATAAATATATTAATAATCATACGAAT-AAATT-AAT
* * * *
11031826 ATAATCATACAAATAAATATATTAATAATCATGCGAATATATTGAT
1 ATAATCAAACAAATAAATATATTAATAATCATACGAATAAATTAAT
* *
11031872 A-AATCACACAAATAAGTATATTAAT
1 ATAATCAAACAAATAAATATATTAAT
11031897 CATGCAAACA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
45 22 0.35
46 3 0.05
47 35 0.56
48 3 0.05
ACGTcount: A:0.54, C:0.10, G:0.03, T:0.32
Consensus pattern (46 bp):
ATAATCAAACAAATAAATATATTAATAATCATACGAATAAATTAAT
Found at i:11032584 original size:14 final size:13
Alignment explanation
Indices: 11032566--11032603 Score: 60
Period size: 12 Copynumber: 2.9 Consensus size: 13
11032556 ATTTTGACTA
11032566 AAAAAAATTAAAC
1 AAAAAAATTAAAC
11032579 -AAAAAATTAAAC
1 AAAAAAATTAAAC
11032591 TAAAAAAATTAAA
1 -AAAAAAATTAAA
11032604 ATACAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 12 0.52
14 11 0.48
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.18
Consensus pattern (13 bp):
AAAAAAATTAAAC
Found at i:11035057 original size:25 final size:26
Alignment explanation
Indices: 11035028--11035093 Score: 89
Period size: 26 Copynumber: 2.5 Consensus size: 26
11035018 TTAATATAAC
*
11035028 TATTAAAATATTA-CAAATTATTTCT
1 TATTAAAATATTATCAAATTATTTAT
* *
11035053 TATTAAAATATAATGAAATTATTTAT
1 TATTAAAATATTATCAAATTATTTAT
11035079 TATTAAAATTATTAT
1 TATTAAAA-TATTAT
11035094 ATTCAAGAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 12 0.34
26 18 0.51
27 5 0.14
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (26 bp):
TATTAAAATATTATCAAATTATTTAT
Found at i:11035087 original size:16 final size:16
Alignment explanation
Indices: 11035068--11035162 Score: 54
Period size: 18 Copynumber: 5.6 Consensus size: 16
11035058 AAATATAATG
11035068 AAATTATTTATTATTA
1 AAATTATTTATTATTA
11035084 AAATTA-TTA-TATTCA
1 AAATTATTTATTATT-A
*
11035099 AGAATAATTATATT-TTA
1 A-AATTATT-TATTATTA
*
11035116 ATAATAATATTTAATATTA
1 A-AAT--TATTTATTATTA
11035135 AAA-TATTATATTAATATA
1 AAATTATT-TATT-AT-TA
*
11035153 AAAATATTTA
1 AAATTATTTA
11035163 AAGTAAAACA
Statistics
Matches: 62, Mismatches: 5, Indels: 22
0.70 0.06 0.25
Matches are distributed among these distances:
14 4 0.06
15 9 0.15
16 13 0.21
17 8 0.13
18 16 0.26
19 12 0.19
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (16 bp):
AAATTATTTATTATTA
Found at i:11035148 original size:19 final size:18
Alignment explanation
Indices: 11035113--11035160 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
11035103 TAATTATATT
*
11035113 TTAATAATAATATTTAATA
1 TTAA-AATATTATTTAATA
11035132 TTAAAATATTATATTAATA
1 TTAAAATATTAT-TTAATA
*
11035151 TAAAAATATT
1 TTAAAATATT
11035161 TAAAGTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 7 0.27
19 19 0.73
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
TTAAAATATTATTTAATA
Found at i:11035237 original size:17 final size:17
Alignment explanation
Indices: 11035215--11035251 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
11035205 ATTTAAAAAT
*
11035215 AATATTATTATTCTTAA
1 AATATTATTATTATTAA
*
11035232 AATATTATTTTTATTAA
1 AATATTATTATTATTAA
11035249 AAT
1 AAT
11035252 TAAAATAGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (17 bp):
AATATTATTATTATTAA
Found at i:11035244 original size:44 final size:45
Alignment explanation
Indices: 11035167--11035300 Score: 113
Period size: 44 Copynumber: 3.0 Consensus size: 45
11035157 TATTTAAAGT
* *
11035167 AAAACAAT-TTATTATTCTT--TATATTAATATTTTAAAATATTTA
1 AAAATAATATTATTATTCTTAAAATATT-ATATTTTAAAATATTTA
11035210 AAAATAATATTATTATTCTTAAAATATTAT-TTTTATTAAA-A-TTA
1 AAAATAATATTATTATTCTTAAAATATTATATTTTA--AAATATTTA
* *
11035254 AAATAGTAATA-T-TTATTATTAAAATATTTATACTATTAAAATATTTA
1 AAA-A-TAATATTATTATTCTTAAAATA-TTATA-TTTTAAAATATTTA
11035301 TATTTTATAT
Statistics
Matches: 75, Mismatches: 4, Indels: 20
0.76 0.04 0.20
Matches are distributed among these distances:
43 7 0.09
44 35 0.47
45 12 0.16
46 14 0.19
47 7 0.09
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (45 bp):
AAAATAATATTATTATTCTTAAAATATTATATTTTAAAATATTTA
Found at i:11035292 original size:17 final size:16
Alignment explanation
Indices: 11035261--11035303 Score: 70
Period size: 17 Copynumber: 2.7 Consensus size: 16
11035251 TTAAAATAGT
11035261 AATATTTAT-TATTAA
1 AATATTTATATATTAA
11035276 AATATTTATACTATTAA
1 AATATTTATA-TATTAA
11035293 AATATTTATAT
1 AATATTTATAT
11035304 TTTATATTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.35
16 1 0.04
17 16 0.62
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (16 bp):
AATATTTATATATTAA
Found at i:11035932 original size:168 final size:166
Alignment explanation
Indices: 11035601--11035908 Score: 382
Period size: 166 Copynumber: 1.8 Consensus size: 166
11035591 AATATACAAA
* * * *
11035601 ATAAAAATATTTAAAATTGAAATATCAAAATATTTTTAATGTTAATATTTCAACTTATTAATTAA
1 ATAAAAATATTTAAAATTAAAATATCAAAATACTTTTAATATTAATATTTCAACTTATTAAGTAA
11035666 AATTAAATAAAATATTTTTATTAATATAATAATATTTTAAGTCAAATCAAATCAAGTTCGAACTT
66 AATTAAATAAAATATTTTTATTAATATAATAATATTTTAAGTCAAATCAAATCAAGTTCGAACTT
*** **
11035731 AAAATGTTATATTCAAAGTCTTACCTAAGTAAAACT
131 AAAAAAATATATTCAAAGTCCAACCTAAGTAAAACT
* * * * *
11035767 ATAAAAATATTTAAAATTAAAATATTAAAATACTTTTAATATTAATGTTTTAATTTTTTAAGTAA
1 ATAAAAATATTTAAAATTAAAATATCAAAATACTTTTAATATTAATATTTCAACTTATTAAGTAA
* * ** **** * *
11035832 AATTAAGTAAAGATATTATTTATTAATGTAATAATATTTTGGGTTGGGTCAAATTAAGTTTGAAC
66 AATTAAATAAA-ATATT-TTTATTAATATAATAATATTTTAAGTCAAATCAAATCAAGTTCGAAC
11035897 TTAAAAAAATAT
129 TTAAAAAAATAT
11035909 GTATAAGGTC
Statistics
Matches: 118, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
166 66 0.56
167 5 0.04
168 47 0.40
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.41
Consensus pattern (166 bp):
ATAAAAATATTTAAAATTAAAATATCAAAATACTTTTAATATTAATATTTCAACTTATTAAGTAA
AATTAAATAAAATATTTTTATTAATATAATAATATTTTAAGTCAAATCAAATCAAGTTCGAACTT
AAAAAAATATATTCAAAGTCCAACCTAAGTAAAACT
Found at i:11036893 original size:6 final size:7
Alignment explanation
Indices: 11036875--11036905 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
11036865 ATAGTTTTCT
11036875 TAAAAAA
1 TAAAAAA
11036882 TAAAAAA
1 TAAAAAA
11036889 TAAAAAA
1 TAAAAAA
11036896 TAAAAAA
1 TAAAAAA
11036903 TAA
1 TAA
11036906 TTTTTTAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (7 bp):
TAAAAAA
Found at i:11036989 original size:29 final size:27
Alignment explanation
Indices: 11036946--11037002 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 27
11036936 TATTTAGGTA
*
11036946 ATTTTTTTATAAAAATATATTAATATAT
1 ATTTTTTAATAAAAATATATTAAT-TAT
11036974 ATTTTTTCAATAAAAATATATTAATTAT
1 ATTTTTT-AATAAAAATATATTAATTAT
11037002 A
1 A
11037003 ATTAATCTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 11 0.41
29 16 0.59
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (27 bp):
ATTTTTTAATAAAAATATATTAATTAT
Found at i:11037951 original size:26 final size:25
Alignment explanation
Indices: 11037891--11037952 Score: 65
Period size: 26 Copynumber: 2.5 Consensus size: 25
11037881 TTATTTGAAA
*
11037891 AAATATATATT-ATTATTAATTATT
1 AAATATATATTAATTATTAAATATT
* *
11037915 AATTATTTATTAATT-TCATAAATATT
1 AAATATATATTAATTAT--TAAATATT
11037941 AAATATATATTA
1 AAATATATATTA
11037953 TATATTTAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
24 10 0.33
25 3 0.10
26 17 0.57
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (25 bp):
AAATATATATTAATTATTAAATATT
Found at i:11040549 original size:38 final size:38
Alignment explanation
Indices: 11040498--11040572 Score: 116
Period size: 38 Copynumber: 2.0 Consensus size: 38
11040488 GTGAGGGAGT
* *
11040498 TTTTTTTTTGAAATAGA-AAACTTCATTGCTAAACTCAA
1 TTTTTTTTTGAAATA-ATAAACTTCATTACAAAACTCAA
11040536 TTTTTTTTTGAAATAATAAACTTCATTACAAAACTCA
1 TTTTTTTTTGAAATAATAAACTTCATTACAAAACTCA
11040573 TAAATTATCC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
37 1 0.03
38 33 0.97
ACGTcount: A:0.39, C:0.13, G:0.05, T:0.43
Consensus pattern (38 bp):
TTTTTTTTTGAAATAATAAACTTCATTACAAAACTCAA
Found at i:11043343 original size:18 final size:18
Alignment explanation
Indices: 11043295--11043343 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
11043285 AAAAGTTACC
11043295 AAAAAA-AAAAA-AAAAG
1 AAAAAAGAAAAATAAAAG
*
11043311 AAAAGAGAAAAATAAAAG
1 AAAAAAGAAAAATAAAAG
*
11043329 AAAAAAGAAAGATAA
1 AAAAAAGAAAAATAA
11043344 TTGAGAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 5 0.18
17 5 0.18
18 18 0.64
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.04
Consensus pattern (18 bp):
AAAAAAGAAAAATAAAAG
Found at i:11047510 original size:4 final size:4
Alignment explanation
Indices: 11047503--11047536 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
11047493 AATGTGCATT
*
11047503 AATA AATA ATTTA AATA AATA AATA AATA AATA A
1 AATA AATA A-ATA AATA AATA AATA AATA AATA A
11047537 CCAAAAAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
4 24 0.89
5 3 0.11
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (4 bp):
AATA
Found at i:11049392 original size:21 final size:21
Alignment explanation
Indices: 11049368--11049408 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
11049358 TTTTTAGGAT
11049368 TTTTTAAAGTTTTTTTATTTA
1 TTTTTAAAGTTTTTTTATTTA
* *
11049389 TTTTTCAATTTTTTTTATTT
1 TTTTTAAAGTTTTTTTATTT
11049409 TCCTTGAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (21 bp):
TTTTTAAAGTTTTTTTATTTA
Found at i:11049896 original size:57 final size:57
Alignment explanation
Indices: 11049818--11050083 Score: 185
Period size: 57 Copynumber: 4.7 Consensus size: 57
11049808 CTATTGAATG
* ** * * *
11049818 AATGTAGATGACTTCAGATATCATCACTGAAGGAAACTTAGATATTGCCACTGAGAA
1 AATGCAGATGACTTTGGATATCATCACTAAAGGAAACTCAGATATTACCACTGAGAA
* * * * * * * *
11049875 GATGCAGATGATTTTGAATATCACCACCAAAGGGAACTCGGATATTACCACTCAGAA
1 AATGCAGATGACTTTGGATATCATCACTAAAGGAAACTCAGATATTACCACTGAGAA
** * * * *
11049932 AATAAAGATGACTTTGGATATCATCA-TCAATGGAAACTCAGACATCACCATTGAGAA
1 AATGCAGATGACTTTGGATATCATCACT-AAAGGAAACTCAGATATTACCACTGAGAA
* * * * * * * *
11049989 AATGCAAATGACTTTGGATATCACCCCTAAAAGG-AACTCGGATATCATCAATAAGAA
1 AATGCAGATGACTTTGGATATCATCACT-AAAGGAAACTCAGATATTACCACTGAGAA
* * ** * * *
11050046 AATGAAGATAACTTAAGATATCACCACCAAAGAAAACT
1 AATGCAGATGACTTTGGATATCATCACTAAAGGAAACT
11050084 TAAAAAAATT
Statistics
Matches: 158, Mismatches: 48, Indels: 6
0.75 0.23 0.03
Matches are distributed among these distances:
56 4 0.03
57 149 0.94
58 5 0.03
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.23
Consensus pattern (57 bp):
AATGCAGATGACTTTGGATATCATCACTAAAGGAAACTCAGATATTACCACTGAGAA
Found at i:11049941 original size:114 final size:114
Alignment explanation
Indices: 11049823--11050068 Score: 280
Period size: 114 Copynumber: 2.2 Consensus size: 114
11049813 GAATGAATGT
* * * * ** * * *
11049823 AGATGACTTCAGATATCATCACTGAA-GGAAACTTAGATATTGCCACTGAGAAGATGCAGATGAT
1 AGATGACTTAAGATATCATCA-TCAATGGAAACTCAGACATCACCACTGAGAAAATGCAAATGAC
* * * *
11049887 TTTGAATATCACCACC-AAAGGGAACTCGGATATTACCACTCAGAAAATAA
65 TTTGAATATCACC-CCTAAAAGGAACTCGGATATCACCAATAAGAAAATAA
** *
11049937 AGATGACTTTGGATATCATCATCAATGGAAACTCAGACATCACCATTGAGAAAATGCAAATGACT
1 AGATGACTTAAGATATCATCATCAATGGAAACTCAGACATCACCACTGAGAAAATGCAAATGACT
* * *
11050002 TTGGATATCACCCCTAAAAGGAACTCGGATATCATCAATAAGAAAATGA
66 TTGAATATCACCCCTAAAAGGAACTCGGATATCACCAATAAGAAAATAA
*
11050051 AGATAACTTAAGATATCA
1 AGATGACTTAAGATATCA
11050069 CCACCAAAGA
Statistics
Matches: 109, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
113 5 0.05
114 104 0.95
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.24
Consensus pattern (114 bp):
AGATGACTTAAGATATCATCATCAATGGAAACTCAGACATCACCACTGAGAAAATGCAAATGACT
TTGAATATCACCCCTAAAAGGAACTCGGATATCACCAATAAGAAAATAA
Found at i:11055113 original size:48 final size:46
Alignment explanation
Indices: 11055022--11055113 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 46
11055012 AAGCAAGATC
* * * ** *
11055022 AATTTTCATATATGCATGATCCTAAAAATAAAATCTAGGAATAATG
1 AATTTTCATATATACATGATCCAAAAAAAAAAATAAAGAAATAATG
11055068 AATTTTCATATATACATGATCCAAAAAAAAAAAATAAAAGAAATAA
1 AATTTTCATATATACATGATCC-AAAAAAAAAAAT-AAAGAAATAA
11055114 AAAATCTTAG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
46 21 0.55
47 10 0.26
48 7 0.18
ACGTcount: A:0.54, C:0.10, G:0.08, T:0.28
Consensus pattern (46 bp):
AATTTTCATATATACATGATCCAAAAAAAAAAATAAAGAAATAATG
Found at i:11057725 original size:20 final size:20
Alignment explanation
Indices: 11057700--11057737 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
11057690 CAAATTTCAA
11057700 TACTGACCCATTGGACCTTC
1 TACTGACCCATTGGACCTTC
11057720 TACTGACCCATTGGACCT
1 TACTGACCCATTGGACCT
11057738 CATTGTCGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.21, C:0.34, G:0.16, T:0.29
Consensus pattern (20 bp):
TACTGACCCATTGGACCTTC
Found at i:11059125 original size:17 final size:17
Alignment explanation
Indices: 11059099--11059153 Score: 60
Period size: 17 Copynumber: 3.3 Consensus size: 17
11059089 AGTTAAGTAT
*
11059099 TATATTAATAATAAAAA
1 TATATAAATAATAAAAA
* *
11059116 TATATAAATAACAAATA
1 TATATAAATAATAAAAA
11059133 TATATAAAT--TGAAAAA
1 TATATAAATAAT-AAAAA
11059149 TATAT
1 TATAT
11059154 TATTTATAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
16 9 0.28
17 23 0.72
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (17 bp):
TATATAAATAATAAAAA
Found at i:11060577 original size:16 final size:16
Alignment explanation
Indices: 11060556--11060586 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11060546 CTAGTCTGAC
*
11060556 CATGAGAGATGAGAGG
1 CATGAGAGACGAGAGG
11060572 CATGAGAGACGAGAG
1 CATGAGAGACGAGAG
11060587 AAGTGTGAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.10, G:0.42, T:0.10
Consensus pattern (16 bp):
CATGAGAGACGAGAGG
Found at i:11061422 original size:42 final size:39
Alignment explanation
Indices: 11061341--11061423 Score: 94
Period size: 39 Copynumber: 2.1 Consensus size: 39
11061331 AATAGCAAAT
* ***
11061341 ATAATTTTTTTTATAAATTTAAAATTTATCATTTTTTTA
1 ATAATTTTTTTTATAAATTTAAAATTTATAATAACTTTA
*
11061380 ATAATTTTTTTTATAAGTTATTAAAATTTTATAATAACTTTA
1 ATAATTTTTTTTATAA-AT-TTAAAA-TTTATAATAACTTTA
11061422 AT
1 AT
11061424 TAAATTGAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
39 16 0.44
40 1 0.03
41 6 0.17
42 13 0.36
ACGTcount: A:0.39, C:0.02, G:0.01, T:0.58
Consensus pattern (39 bp):
ATAATTTTTTTTATAAATTTAAAATTTATAATAACTTTA
Found at i:11080676 original size:8 final size:8
Alignment explanation
Indices: 11080663--11080703 Score: 55
Period size: 8 Copynumber: 5.0 Consensus size: 8
11080653 TTTAATTCCA
11080663 AAATTTTT
1 AAATTTTT
*
11080671 ATATTTTT
1 AAATTTTT
*
11080679 ATATTTTT
1 AAATTTTT
11080687 AAAATTTTT
1 -AAATTTTT
11080696 AAATTTTT
1 AAATTTTT
11080704 TATGTTTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 23 0.77
9 7 0.23
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (8 bp):
AAATTTTT
Found at i:11080690 original size:25 final size:25
Alignment explanation
Indices: 11080662--11080716 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
11080652 ATTTAATTCC
* *
11080662 AAAATTTTTATATTTTTATAT-TTTT
1 AAAATTTTTAAATTTTT-TATGTTTG
11080687 AAAATTTTTAAATTTTTTATGTTTG
1 AAAATTTTTAAATTTTTTATGTTTG
11080712 AAAAT
1 AAAAT
11080717 AAATATTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 3 0.11
25 24 0.89
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (25 bp):
AAAATTTTTAAATTTTTTATGTTTG
Found at i:11081399 original size:21 final size:21
Alignment explanation
Indices: 11081374--11081419 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
11081364 AATTTTCTAG
*
11081374 AAAAAAA-TCATCAAAAATTCT
1 AAAAAAATTCAT-AAAAACTCT
*
11081395 AAAAAAATTCCTAAAAACTCT
1 AAAAAAATTCATAAAAACTCT
11081416 AAAA
1 AAAA
11081420 TTGCTTCTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 19 0.86
22 3 0.14
ACGTcount: A:0.63, C:0.15, G:0.00, T:0.22
Consensus pattern (21 bp):
AAAAAAATTCATAAAAACTCT
Found at i:11082156 original size:42 final size:42
Alignment explanation
Indices: 11082009--11082310 Score: 332
Period size: 42 Copynumber: 7.4 Consensus size: 42
11081999 AGGCTCAACG
* * ****
11082009 ACTTTGGAAAAATAAA-TGCTCCTCTAAATAGAGGCTTTGCA
1 ACTTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACA
* * *
11082050 AC-TTTGAAAAATAAAATGCTCCTTTAATCAGAGGCACCACA
1 ACTTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACA
* * * *
11082091 AC-TTTGGAAAA-AAATTACTCCTCTAAACAGAGGTATCACA
1 ACTTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACA
* *
11082131 GCTTTTGAAAAATAAATTGCTCCTCTAAATAGAGGCACCACA
1 ACTTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACA
* **
11082173 ACTTTTG-AAAA-AAA-TGCTCTTCTAAACAGAGGCATTACA
1 ACTTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACA
* * *
11082212 ACTTTTGAAAAATAAATTACTCCTCTAAATAGAGGCACCATA
1 ACTTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACA
* * *
11082254 ACTTTTGAAAAATAAAATGCTCCTTTAAACAGAGGCACCATA
1 ACTTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACA
11082296 AC-TTTGAAAAATAAA
1 ACTTTTGAAAAATAAA
11082311 AGGCTCATTG
Statistics
Matches: 219, Mismatches: 36, Indels: 12
0.82 0.13 0.04
Matches are distributed among these distances:
39 28 0.13
40 43 0.20
41 58 0.26
42 90 0.41
ACGTcount: A:0.42, C:0.19, G:0.13, T:0.27
Consensus pattern (42 bp):
ACTTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACA
Found at i:11082228 original size:81 final size:81
Alignment explanation
Indices: 11081987--11082310 Score: 373
Period size: 81 Copynumber: 4.0 Consensus size: 81
11081977 TAAACAAAGG
* * * * * * **
11081987 TCCTTTAAATAGAGGCTCAACGACTTTGGAAAAATAAATGCTCCTCTAAATAGAGGCTTTGCAAC
1 TCCTCTAAATAGAGGCACCACAACTTTGGAAAAA-AAATGCTCCTCTAAACAGAGGCATCACAAC
*
11082052 TTTGAAAAATAAAATGC
65 TTTGAAAAATAAATTGC
* * * * *
11082069 TCCT-TTAATCAGAGGCACCACAACTTTGGAAAAAAATTACTCCTCTAAACAGAGGTATCACAGC
1 TCCTCTAAAT-AGAGGCACCACAACTTTGGAAAAAAAATGCTCCTCTAAACAGAGGCATCACAAC
11082133 TTTTGAAAAATAAATTGC
65 -TTTGAAAAATAAATTGC
* * *
11082151 TCCTCTAAATAGAGGCACCACAACTTTTG-AAAAAAATGCTCTTCTAAACAGAGGCATTACAACT
1 TCCTCTAAATAGAGGCACCACAACTTTGGAAAAAAAATGCTCCTCTAAACAGAGGCATCACAAC-
*
11082215 TTTGAAAAATAAATTAC
65 TTTGAAAAATAAATTGC
* * * * *
11082232 TCCTCTAAATAGAGGCACCATAACTTTTGAAAAATAAAATGCTCCTTTAAACAGAGGCACCATAA
1 TCCTCTAAATAGAGGCACCACAAC-TTTGGAAAA-AAAATGCTCCTCTAAACAGAGGCATCACAA
11082297 CTTTGAAAAATAAA
64 CTTTGAAAAATAAA
11082311 AGGCTCATTG
Statistics
Matches: 206, Mismatches: 30, Indels: 11
0.83 0.12 0.04
Matches are distributed among these distances:
81 94 0.46
82 66 0.32
83 20 0.10
84 26 0.13
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (81 bp):
TCCTCTAAATAGAGGCACCACAACTTTGGAAAAAAAATGCTCCTCTAAACAGAGGCATCACAACT
TTGAAAAATAAATTGC
Found at i:11082229 original size:123 final size:119
Alignment explanation
Indices: 11082009--11082306 Score: 355
Period size: 123 Copynumber: 2.4 Consensus size: 119
11081999 AGGCTCAACG
* ****
11082009 ACTTTGGAAAAATAAATGCTCCTCTAAATAGAGGCTTTGCAACTTTGAAAAATAAAATGCTCCTT
1 ACTTTTGAAAAATAAATGCTCCTCTAAATAGAGGCACCACAACTTTG--AAA-AAAATGCTCCTT
* * * *
11082074 TAATCAGAGGCACCACAACTTTGGAAAAAAATTACTCCTCTAAACAGAGGTATCACA
63 TAAACAGAGGCACCACAACTTTGAAAAAAAATTACTCCTCTAAACAGAGGCACCACA
*
11082131 GCTTTTGAAAAATAAATTGCTCCTCTAAATAGAGGCACCACAACTTTTGAAAAAAATGCT-CTTC
1 ACTTTTGAAAAATAAA-TGCTCCTCTAAATAGAGGCACCACAAC-TTTGAAAAAAATGCTCCTT-
** * *
11082195 TAAACAGAGGCATTACAACTTTTGAAAAATAAATTACTCCTCTAAATAGAGGCACCATA
63 TAAACAGAGGCACCACAAC-TTTGAAAAA-AAATTACTCCTCTAAACAGAGGCACCACA
* * *
11082254 ACTTTTGAAAAATAAAATGCTCCTTTAAACAGAGGCACCATAACTTTGAAAAA
1 ACTTTTGAAAAAT-AAATGCTCCTCTAAATAGAGGCACCACAACTTTGAAAAA
11082307 TAAAAGGCTC
Statistics
Matches: 152, Mismatches: 18, Indels: 12
0.84 0.10 0.07
Matches are distributed among these distances:
120 3 0.02
121 24 0.16
122 34 0.22
123 84 0.55
124 7 0.05
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (119 bp):
ACTTTTGAAAAATAAATGCTCCTCTAAATAGAGGCACCACAACTTTGAAAAAAATGCTCCTTTAA
ACAGAGGCACCACAACTTTGAAAAAAAATTACTCCTCTAAACAGAGGCACCACA
Found at i:11082698 original size:20 final size:21
Alignment explanation
Indices: 11082647--11082686 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
11082637 TGTTTTACAC
11082647 TTCAAAGATTCTCATTTGAAA
1 TTCAAAGATTCTCATTTGAAA
11082668 TTCAAAGATTCTCATTTGA
1 TTCAAAGATTCTCATTTGA
11082687 GTTTGAAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (21 bp):
TTCAAAGATTCTCATTTGAAA
Found at i:11082752 original size:79 final size:79
Alignment explanation
Indices: 11082625--11082842 Score: 337
Period size: 79 Copynumber: 2.7 Consensus size: 79
11082615 GCTCATATTT
* * *
11082625 GACAAATTTTAGTGTTTTACACTTCAAAGATTCTCATTTGAAATTCAAAGATTCTCATTTGAGTT
1 GACAAATTTTAG-GTTTCACACATCAAAGATTCTCATTTGAAATTCAAATATTCTCATTTGAGTT
11082690 TGAAGATTCACATTC
65 TGAAGATTCACATTC
* * *
11082705 GACAAATTTTTGGTTTCACACCTCAAAGATTATCATTTGAAATTCAAATATTCTCATTTGAGTTT
1 GACAAATTTTAGGTTTCACACATCAAAGATTCTCATTTGAAATTCAAATATTCTCATTTGAGTTT
* *
11082770 TAAGATTCACATTT
66 GAAGATTCACATTC
* *
11082784 GACAAATTTTGGGTTTCACACATCAAAGATTCTCATTTGAGATTCAAATATTCTCATTT
1 GACAAATTTTAGGTTTCACACATCAAAGATTCTCATTTGAAATTCAAATATTCTCATTT
11082843 AAGATTCAAA
Statistics
Matches: 127, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
79 116 0.91
80 11 0.09
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.40
Consensus pattern (79 bp):
GACAAATTTTAGGTTTCACACATCAAAGATTCTCATTTGAAATTCAAATATTCTCATTTGAGTTT
GAAGATTCACATTC
Found at i:11082853 original size:42 final size:41
Alignment explanation
Indices: 11082806--11082987 Score: 135
Period size: 42 Copynumber: 4.4 Consensus size: 41
11082796 GTTTCACACA
*
11082806 TCAAAGATTCTCATTTGAGATTCAAATATTCTCATTT-AAGAT
1 TCAAAGATTCTCATTTGA-ATTCAAAGATTCTCATTTCAA-AT
* * * * *
11082848 TCAAAGATCCTCATTTGAATTTCAAAGACTCTTATTTGATAT
1 TCAAAGATTCTCATTTGAA-TTCAAAGATTCTCATTTCAAAT
* * * ** *
11082890 TCAAAGATTCACGTTTG-A---AAA-ATTTTGGGTTTCATACCT
1 TCAAAGATTCTCATTTGAATTCAAAGATTCT-CATTTCA-A-AT
*
11082929 T-AAAGATTCTCATTTGAAATTCAAAGATTCTCATTTGAAAT
1 TCAAAGATTCTCATTTG-AATTCAAAGATTCTCATTTCAAAT
11082970 TCAAAGATTCTCATTTGA
1 TCAAAGATTCTCATTTGA
11082988 GTTTGAAGAT
Statistics
Matches: 106, Mismatches: 22, Indels: 25
0.69 0.14 0.16
Matches are distributed among these distances:
36 3 0.03
37 7 0.07
38 13 0.12
39 2 0.02
40 1 0.01
41 5 0.05
42 63 0.59
43 8 0.08
44 4 0.04
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.40
Consensus pattern (41 bp):
TCAAAGATTCTCATTTGAATTCAAAGATTCTCATTTCAAAT
Found at i:11082907 original size:21 final size:21
Alignment explanation
Indices: 11082806--11082899 Score: 118
Period size: 21 Copynumber: 4.5 Consensus size: 21
11082796 GTTTCACACA
11082806 TCAAAGATTCTCATTTGAGAT
1 TCAAAGATTCTCATTTGAGAT
* *
11082827 TCAAATATTCTCATTTAAGAT
1 TCAAAGATTCTCATTTGAGAT
*
11082848 TCAAAGATCCTCATTTGA-ATT
1 TCAAAGATTCTCATTTGAGA-T
* * *
11082869 TCAAAGACTCTTATTTGATAT
1 TCAAAGATTCTCATTTGAGAT
11082890 TCAAAGATTC
1 TCAAAGATTC
11082900 ACGTTTGAAA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
20 1 0.02
21 60 0.97
22 1 0.02
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (21 bp):
TCAAAGATTCTCATTTGAGAT
Found at i:11082934 original size:122 final size:121
Alignment explanation
Indices: 11082727--11082987 Score: 355
Period size: 122 Copynumber: 2.1 Consensus size: 121
11082717 GTTTCACACC
* * * * *
11082727 TCAAAGATTATCATTTGAAATTCAAATATTCTCATTTGAGTTTTAAGATTCACATTTGACAAATT
1 TCAAAGATTCTCATTTGAAATTCAAAGACTCTCATTTGAGTTTAAAGATTCACATTTGAAAAATT
* *
11082792 TTGGGTTTCACACATCAAAGATTCTCATTTGAGATTCAAATATTCTCATTT-AAGAT
66 TTGGGTTTCACACATCAAAGATTCTCATTTGAAATTCAAAGATTCTCATTTGAA-AT
* * * *
11082848 TCAAAGATCCTCATTTGAATTTCAAAGACTCTTATTTGA-TATTCAAAGATTCACGTTTGAAAAA
1 TCAAAGATTCTCATTTGAAATTCAAAGACTCTCATTTGAGT-TT-AAAGATTCACATTTGAAAAA
* * *
11082912 TTTTGGGTTTCATACCTTAAAGATTCTCATTTGAAATTCAAAGATTCTCATTTGAAAT
64 TTTTGGGTTTCACACATCAAAGATTCTCATTTGAAATTCAAAGATTCTCATTTGAAAT
11082970 TCAAAGATTCTCATTTGA
1 TCAAAGATTCTCATTTGA
11082988 GTTTGAAGAT
Statistics
Matches: 122, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
120 1 0.01
121 35 0.29
122 84 0.69
123 2 0.02
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40
Consensus pattern (121 bp):
TCAAAGATTCTCATTTGAAATTCAAAGACTCTCATTTGAGTTTAAAGATTCACATTTGAAAAATT
TTGGGTTTCACACATCAAAGATTCTCATTTGAAATTCAAAGATTCTCATTTGAAAT
Found at i:11082956 original size:21 final size:21
Alignment explanation
Indices: 11082930--11082987 Score: 116
Period size: 21 Copynumber: 2.8 Consensus size: 21
11082920 TTCATACCTT
11082930 AAAGATTCTCATTTGAAATTC
1 AAAGATTCTCATTTGAAATTC
11082951 AAAGATTCTCATTTGAAATTC
1 AAAGATTCTCATTTGAAATTC
11082972 AAAGATTCTCATTTGA
1 AAAGATTCTCATTTGA
11082988 GTTTGAAGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (21 bp):
AAAGATTCTCATTTGAAATTC
Found at i:11083044 original size:100 final size:99
Alignment explanation
Indices: 11082647--11083087 Score: 428
Period size: 100 Copynumber: 4.4 Consensus size: 99
11082637 TGTTTTACAC
*
11082647 TTCAAAGATTCTCATTTGAAATTCAAAGATTCTCATTTGAGTTTGAAGATTCACATTCGACAAAT
1 TTCAAAGATTCTCATTTGAAATTCAAAGATTCTCATTTGAGTTTGAAGATTCACATTC-AAAAAT
* *
11082712 TTTTGGTTTCACACCTCAAAGATTATCATTTGAAA
65 TTTGGGTTTCACACCTCAAAGATTCTCATTTGAAA
* * ** * * * * *
11082747 TTCAAATATTCTCATTTG-AGTTTTAAGATTCACATTTGACAAATTTTG-GGTTTCACACATCAA
1 TTCAAAGATTCTCATTTGAAATTCAAAGATTCTCATTTG----AGTTTGAAGATTCACA-TTCAA
* * ** * * * *
11082810 AGATTCT-CATTTGAGA-TTCAAATATTCTCATTT-AAGA
61 AAATTTTGGGTTTCACACCTCAAAGATTCTCATTTGAA-A
* * * * * * *
11082847 TTCAAAGATCCTCATTTGAATTTCAAAGACTCTTATTTGA-TATTCAAAGATTCACGTTTGAAAA
1 TTCAAAGATTCTCATTTGAAATTCAAAGATTCTCATTTGAGT-TT-GAAGATTCAC-ATTCAAAA
* *
11082911 ATTTTGGGTTTCATACCTTAAAGATTCTCATTTGAAA
63 ATTTTGGGTTTCACACCTCAAAGATTCTCATTTGAAA
*
11082948 TTCAAAGATTCTCATTTGAAATTCAAAGATTCTCATTTGAGTTTGAAGATTCACATTCACCAAAT
1 TTCAAAGATTCTCATTTGAAATTCAAAGATTCTCATTTGAGTTTGAAGATTCACATTCA-AAAAT
*
11083013 TTTGGGTTTCACACCTCAAATATTCTCATTTGAAA
65 TTTGGGTTTCACACCTCAAAGATTCTCATTTGAAA
* *
11083048 TTC-AAGTATTCTCATTTGAGATTCAAAGATCCTCATTTGA
1 TTCAAAG-ATTCTCATTTGAAATTCAAAGATTCTCATTTGA
11083088 AAACTTAAAA
Statistics
Matches: 269, Mismatches: 55, Indels: 34
0.75 0.15 0.09
Matches are distributed among these distances:
96 1 0.00
97 3 0.01
99 38 0.14
100 132 0.49
101 72 0.27
102 16 0.06
103 7 0.03
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (99 bp):
TTCAAAGATTCTCATTTGAAATTCAAAGATTCTCATTTGAGTTTGAAGATTCACATTCAAAAATT
TTGGGTTTCACACCTCAAAGATTCTCATTTGAAA
Found at i:11083052 original size:21 final size:21
Alignment explanation
Indices: 11083028--11083089 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
11083018 GTTTCACACC
11083028 TCAAATATTCTCATTTGAAAT
1 TCAAATATTCTCATTTGAAAT
* *
11083049 TCAAGTATTCTCATTTGAGAT
1 TCAAATATTCTCATTTGAAAT
* *
11083070 TCAAAGATCCTCATTTGAAA
1 TCAAATATTCTCATTTGAAA
11083090 ACTTAAAAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (21 bp):
TCAAATATTCTCATTTGAAAT
Found at i:11083446 original size:23 final size:23
Alignment explanation
Indices: 11083420--11083465 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
11083410 CTTTGGAACA
*
11083420 AGTTTCATCAAC-TGATCATCATT
1 AGTTTCATC-ACTTGATCACCATT
11083443 AGTTTCATCACTTGATCACCATT
1 AGTTTCATCACTTGATCACCATT
11083466 CGAAGGTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 2 0.10
23 19 0.90
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (23 bp):
AGTTTCATCACTTGATCACCATT
Found at i:11084297 original size:16 final size:15
Alignment explanation
Indices: 11084276--11084325 Score: 82
Period size: 16 Copynumber: 3.2 Consensus size: 15
11084266 TTTCTCTCCC
11084276 TTTCATTTTTCATTT
1 TTTCATTTTTCATTT
11084291 TTCTCATTTTTCATTT
1 TT-TCATTTTTCATTT
11084307 TTTCATTTTTTCATTT
1 TTTCA-TTTTTCATTT
11084323 TTT
1 TTT
11084326 TTCATTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
15 5 0.15
16 28 0.85
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTCATTTTTCATTT
Found at i:11084300 original size:8 final size:7
Alignment explanation
Indices: 11084276--11084324 Score: 62
Period size: 8 Copynumber: 6.4 Consensus size: 7
11084266 TTTCTCTCCC
11084276 TTTCATT
1 TTTCATT
11084283 TTTCATTT
1 TTTCA-TT
11084291 TTCTCATT
1 TT-TCATT
11084299 TTTCATTT
1 TTTCA-TT
11084307 TTTCATTT
1 TTTCA-TT
11084315 TTTCATT
1 TTTCATT
11084322 TTT
1 TTT
11084325 TTTCATTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
7 13 0.33
8 23 0.59
9 3 0.08
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTCATT
Found at i:11084325 original size:8 final size:8
Alignment explanation
Indices: 11084276--11084365 Score: 85
Period size: 10 Copynumber: 10.4 Consensus size: 8
11084266 TTTCTCTCCC
11084276 TTTCA-TT
1 TTTCATTT
11084283 TTTCATTT
1 TTTCATTT
11084291 TTCTCA-TT
1 TT-TCATTT
11084299 TTTCATTT
1 TTTCATTT
11084307 TTTCATTT
1 TTTCATTT
11084315 TTTCATTTTT
1 TTTCA--TTT
11084325 TTTCATTTTT
1 TTTCA--TTT
11084335 TTTCATTTTT
1 TTTCA--TTT
11084345 TTTCATTTTT
1 TTTCA--TTT
11084355 TTTCATTT
1 TTTCATTT
11084363 TTT
1 TTT
11084366 GATTCTTTTT
Statistics
Matches: 78, Mismatches: 0, Indels: 9
0.90 0.00 0.10
Matches are distributed among these distances:
7 8 0.10
8 29 0.37
9 3 0.04
10 38 0.49
ACGTcount: A:0.11, C:0.12, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTCATTT
Found at i:11084333 original size:16 final size:17
Alignment explanation
Indices: 11084276--11084364 Score: 93
Period size: 15 Copynumber: 5.6 Consensus size: 17
11084266 TTTCTCTCCC
11084276 TTTCATTTTTCA-TTTT
1 TTTCATTTTTCATTTTT
*
11084292 TCTCATTTTTCA--TTT
1 TTTCATTTTTCATTTTT
11084307 TTTCATTTTTTCATTTTT
1 TTTCA-TTTTTCATTTTT
**
11084325 TTTCATTTTT--TTTCA
1 TTTCATTTTTCATTTTT
11084340 TTT--TTTTTCATTTTT
1 TTTCATTTTTCATTTTT
11084355 TTTCATTTTT
1 TTTCATTTTT
11084365 TGATTCTTTT
Statistics
Matches: 60, Mismatches: 6, Indels: 13
0.76 0.08 0.16
Matches are distributed among these distances:
13 5 0.08
15 19 0.32
16 18 0.30
17 10 0.17
18 8 0.13
ACGTcount: A:0.11, C:0.12, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTCATTTTTCATTTTT
Found at i:11084355 original size:38 final size:38
Alignment explanation
Indices: 11084297--11084399 Score: 108
Period size: 40 Copynumber: 2.7 Consensus size: 38
11084287 ATTTTTCTCA
11084297 TTTTTCA--TTTTTTCATTTTTTCATTTTTT-TTCATTT
1 TTTTTCATTTTTTTTCATTTTTTCATTTTTTATTC-TTT
11084333 TTTTTCATTTTTTTTCATTTTTTTTCATTTTTTGATTCTTT
1 TTTTTCATTTTTTTTCA--TTTTTTCATTTTTT-ATTCTTT
* *
11084374 TTCCTT--TTTTTTTTCCTTTTTTCATT
1 TT-TTTCATTTTTTTTCATTTTTTCATT
11084400 CTTTCACCCA
Statistics
Matches: 58, Mismatches: 2, Indels: 12
0.81 0.03 0.17
Matches are distributed among these distances:
36 7 0.12
38 18 0.31
40 23 0.40
41 5 0.09
42 5 0.09
ACGTcount: A:0.09, C:0.13, G:0.01, T:0.78
Consensus pattern (38 bp):
TTTTTCATTTTTTTTCATTTTTTCATTTTTTATTCTTT
Found at i:11084385 original size:20 final size:19
Alignment explanation
Indices: 11084281--11084384 Score: 105
Period size: 20 Copynumber: 5.7 Consensus size: 19
11084271 CTCCCTTTCA
*
11084281 TTTTTCATTTTTCTCA---
1 TTTTTCATTTTTTTCATTT
11084297 TTTTTCA-TTTTTTCA--T
1 TTTTTCATTTTTTTCATTT
11084313 TTTTTCATTTTTTTTCATTT
1 TTTTTCA-TTTTTTTCATTT
11084333 TTTTTCATTTTTTTTCATTT
1 TTTTTCA-TTTTTTTCATTT
* *
11084353 TTTTTCA-TTTTTTGATTC
1 TTTTTCATTTTTTTCATTT
*
11084371 TTTTTCCTTTTTTT
1 TTTTTCATTTTTTT
11084385 TTTCCTTTTT
Statistics
Matches: 78, Mismatches: 4, Indels: 9
0.86 0.04 0.10
Matches are distributed among these distances:
15 7 0.09
16 14 0.18
18 23 0.29
19 6 0.08
20 28 0.36
ACGTcount: A:0.10, C:0.12, G:0.01, T:0.77
Consensus pattern (19 bp):
TTTTTCATTTTTTTCATTT
Found at i:11084386 original size:12 final size:12
Alignment explanation
Indices: 11084371--11084395 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
11084361 TTTTTGATTC
11084371 TTTTTCCTTTTT
1 TTTTTCCTTTTT
11084383 TTTTTCCTTTTT
1 TTTTTCCTTTTT
11084395 T
1 T
11084396 CATTCTTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTTCCTTTTT
Found at i:11084394 original size:20 final size:18
Alignment explanation
Indices: 11084312--11084399 Score: 86
Period size: 20 Copynumber: 4.6 Consensus size: 18
11084302 CATTTTTTCA
11084312 TTTTTTCATTTTTTTTCATT
1 TTTTTTCATTTTTTTT--TT
11084332 TTTTTTCATTTTTTTTCATT
1 TTTTTTCATTTTTTTT--TT
**
11084352 TTTTTTCATTTTTTGATT
1 TTTTTTCATTTTTTTTTT
* *
11084370 CTTTTTCCTTTTTTTTTT
1 TTTTTTCATTTTTTTTTT
11084388 CCTTTTTTCATT
1 --TTTTTTCATT
11084400 CTTTCACCCA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
18 16 0.28
20 42 0.72
ACGTcount: A:0.08, C:0.12, G:0.01, T:0.78
Consensus pattern (18 bp):
TTTTTTCATTTTTTTTTT
Found at i:11084395 original size:10 final size:10
Alignment explanation
Indices: 11084304--11084365 Score: 110
Period size: 10 Copynumber: 6.4 Consensus size: 10
11084294 TCATTTTTCA
11084304 TTTTTTCA--
1 TTTTTTCATT
11084312 TTTTTTCATT
1 TTTTTTCATT
11084322 TTTTTTCATT
1 TTTTTTCATT
11084332 TTTTTTCATT
1 TTTTTTCATT
11084342 TTTTTTCATT
1 TTTTTTCATT
11084352 TTTTTTCATT
1 TTTTTTCATT
11084362 TTTT
1 TTTT
11084366 GATTCTTTTT
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
8 8 0.15
10 44 0.85
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.81
Consensus pattern (10 bp):
TTTTTTCATT
Found at i:11084753 original size:24 final size:22
Alignment explanation
Indices: 11084711--11084758 Score: 69
Period size: 24 Copynumber: 2.1 Consensus size: 22
11084701 ATGTATGGCA
11084711 TTCATTTCTTTTTTCTCTTTCT
1 TTCATTTCTTTTTTCTCTTTCT
*
11084733 TTCATTTTGCTTTTTTTTCTTTCT
1 TTCA-TTT-CTTTTTTCTCTTTCT
11084757 TT
1 TT
11084759 GAGACCTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 4 0.17
23 3 0.13
24 16 0.70
ACGTcount: A:0.04, C:0.19, G:0.02, T:0.75
Consensus pattern (22 bp):
TTCATTTCTTTTTTCTCTTTCT
Found at i:11088878 original size:15 final size:15
Alignment explanation
Indices: 11088858--11088886 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
11088848 ATTTTTATTA
11088858 TATTTTAAAATTTTC
1 TATTTTAAAATTTTC
11088873 TATTTTAAAATTTT
1 TATTTTAAAATTTT
11088887 TAAATTTGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
TATTTTAAAATTTTC
Found at i:11091711 original size:15 final size:14
Alignment explanation
Indices: 11091691--11091733 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
11091681 AATAGAATAG
*
11091691 AAAAATAAATAGCTT
1 AAAAATAAATAG-AT
11091706 AAAAATAAA-AGAT
1 AAAAATAAATAGAT
11091719 AAAAATAAATA-AT
1 AAAAATAAATAGAT
11091732 AA
1 AA
11091734 TCAAACAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
13 14 0.54
14 3 0.12
15 9 0.35
ACGTcount: A:0.72, C:0.02, G:0.05, T:0.21
Consensus pattern (14 bp):
AAAAATAAATAGAT
Found at i:11091802 original size:21 final size:22
Alignment explanation
Indices: 11091773--11091813 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
11091763 TAATAAGATA
*
11091773 AAAAAAAT-ATAAGCAAAGTAT
1 AAAAAAATAATAAGAAAAGTAT
*
11091794 AAAACAATAATAAGAAAAGT
1 AAAAAAATAATAAGAAAAGT
11091814 TATATAACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.68, C:0.05, G:0.10, T:0.17
Consensus pattern (22 bp):
AAAAAAATAATAAGAAAAGTAT
Found at i:11091836 original size:5 final size:5
Alignment explanation
Indices: 11091826--11091857 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
11091816 TATAACTAAT
*
11091826 TAAAA TAAAA TAAAA CAAAA TAAAA TAAAA TA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TA
11091858 GATTTGGACA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (5 bp):
TAAAA
Found at i:11092283 original size:21 final size:22
Alignment explanation
Indices: 11092252--11092292 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
11092242 TTTTTTCTCG
11092252 ATTTCTTTTCTTTTCATTTTTC
1 ATTTCTTTTCTTTTCATTTTTC
*
11092274 ATTT-TTTTCTTTTGATTTT
1 ATTTCTTTTCTTTTCATTTT
11092293 CATAATTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.10, C:0.12, G:0.02, T:0.76
Consensus pattern (22 bp):
ATTTCTTTTCTTTTCATTTTTC
Found at i:11093028 original size:2 final size:2
Alignment explanation
Indices: 11093021--11093048 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
11093011 CCTCTTTATG
11093021 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11093049 GTATGTGTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11093251 original size:13 final size:13
Alignment explanation
Indices: 11093216--11093254 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
11093206 TATATTATAT
*
11093216 TTTTTTTATTTTTC
1 TTTTTTT-TTCTTC
*
11093230 TTTTCTTTTCTTC
1 TTTTTTTTTCTTC
11093243 TTTTTTTTTCTT
1 TTTTTTTTTCTT
11093255 TTTCATGCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTTTTTCTTC
Found at i:11094441 original size:23 final size:24
Alignment explanation
Indices: 11094411--11094463 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
11094401 GAGTATTTAT
*
11094411 AAAAAAATTTTC-AATACAATAAA
1 AAAAAAATTTTCTAATAAAATAAA
* *
11094434 AAAAAAATTTTCTTATAAAATAAC
1 AAAAAAATTTTCTAATAAAATAAA
11094458 AAAAAA
1 AAAAAA
11094464 TTAATTAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 12 0.46
24 14 0.54
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (24 bp):
AAAAAAATTTTCTAATAAAATAAA
Found at i:11106476 original size:48 final size:50
Alignment explanation
Indices: 11106415--11106620 Score: 222
Period size: 52 Copynumber: 4.1 Consensus size: 50
11106405 AGCTTTTTTG
* * *
11106415 GATGAG-ATTTTTAAAATTGTCAAGCCTCTACTGAGAGAAGCTTTTTACAA
1 GATGAGAATTTTTAAAGTTGTTAAGCCTCTACTGAGAGGAGCTTTTT-CAA
* * *
11106465 -ATGA-AA-TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCCTTTTCAA
1 GATGAGAATTTTTAAAGTTGTTAAGCCTCTACTGAGAGGAG-CTTTTTCAA
* * *
11106513 GATGAGAATTTTTAAAGTTGTTAAACCTCTACTGAAAGGAGCTTTTCCAA
1 GATGAGAATTTTTAAAGTTGTTAAGCCTCTACTGAGAGGAGCTTTTTCAA
* * * *
11106563 GATGAAAGAATTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCCCTTTTCAA
1 GATG--AGAATTTTTAAAGTTGTTAAGCCTCTACTGAGAGGAG-CTTTTTCAA
11106616 GATGA
1 GATGA
11106621 AACCTCTGCT
Statistics
Matches: 129, Mismatches: 19, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
48 30 0.23
49 14 0.11
50 13 0.10
51 29 0.22
52 32 0.25
53 11 0.09
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (50 bp):
GATGAGAATTTTTAAAGTTGTTAAGCCTCTACTGAGAGGAGCTTTTTCAA
Found at i:11106607 original size:103 final size:98
Alignment explanation
Indices: 11106415--11106620 Score: 288
Period size: 103 Copynumber: 2.1 Consensus size: 98
11106405 AGCTTTTTTG
* *
11106415 GATGAGATTTTTAAAATTGTCAAGCCTCTACTGAGAGAAGCTTTTTACAAATGAAATTTTAAAGT
1 GATGAGATTTTTAAAATTGTCAAACCTCTACTGAAAGAAGCTTTTTACAAATGAAATTTTAAAGT
11106480 TGTTGAGCCTCTGCTGAGAGGAGCCCTTTTCAA
66 TGTTGAGCCTCTGCTGAGAGGAGCCCTTTTCAA
* * * *
11106513 GATGAGAATTTTTAAAGTTGTTAAACCTCTACTGAAAGGAGC-TTTTCCAAGATGAAAGAATTTT
1 GATGAG-ATTTTTAAAATTGTCAAACCTCTACTGAAAGAAGCTTTTTACAA-ATG--A-AA-TTT
*
11106577 TAAAGTTGTTGAGCCTCTGCTGAGATGAGCCCTTTTCAA
60 TAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCCTTTTCAA
11106616 GATGA
1 GATGA
11106621 AACCTCTGCT
Statistics
Matches: 95, Mismatches: 7, Indels: 7
0.87 0.06 0.06
Matches are distributed among these distances:
98 13 0.14
99 33 0.35
101 1 0.01
102 2 0.02
103 46 0.48
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (98 bp):
GATGAGATTTTTAAAATTGTCAAACCTCTACTGAAAGAAGCTTTTTACAAATGAAATTTTAAAGT
TGTTGAGCCTCTGCTGAGAGGAGCCCTTTTCAA
Found at i:11106628 original size:33 final size:33
Alignment explanation
Indices: 11106590--11106653 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
11106580 AGTTGTTGAG
*
11106590 CCTCTGCTGAGATGAGCCCTTTTCAAGATGAAA
1 CCTCTGCTGAGAGGAGCCCTTTTCAAGATGAAA
11106623 CCTCTGCTGAGAGGAGCCCTTTTCAAGATGA
1 CCTCTGCTGAGAGGAGCCCTTTTCAAGATGA
11106654 GAATTTTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (33 bp):
CCTCTGCTGAGAGGAGCCCTTTTCAAGATGAAA
Found at i:11106678 original size:84 final size:84
Alignment explanation
Indices: 11106535--11106690 Score: 217
Period size: 84 Copynumber: 1.8 Consensus size: 84
11106525 TAAAGTTGTT
** *
11106535 AAACCTCTACTGAAAGGAGCTTTTCCAAGATGAAAGAATTTTTAAAGTTGTTGAGCCTCTGCTGA
1 AAACCTCTACTGAAAGGAGCTTTTCCAAGATG-AAGAATTTTTAAAGTTGTCAAACCTCTGCTGA
*
11106600 GATGAGCCCTTTTCAAGATG
65 GAGGAGCCCTTTTCAAGATG
* *
11106620 AAACCTCTGCTGAGAGGAGCCCTTTT-CAAGATG-AGAATTTTTAAAGTTGTCAAACCTCTGCTG
1 AAACCTCTACTGAAAGGAG--CTTTTCCAAGATGAAGAATTTTTAAAGTTGTCAAACCTCTGCTG
11106683 AGAGGAGC
64 AGAGGAGC
11106691 TTTTTTAAGA
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
84 34 0.54
85 17 0.27
86 7 0.11
87 5 0.08
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (84 bp):
AAACCTCTACTGAAAGGAGCTTTTCCAAGATGAAGAATTTTTAAAGTTGTCAAACCTCTGCTGAG
AGGAGCCCTTTTCAAGATG
Found at i:11107043 original size:103 final size:102
Alignment explanation
Indices: 11106623--11107249 Score: 589
Period size: 103 Copynumber: 6.1 Consensus size: 102
11106613 CAAGATGAAA
* *
11106623 CCTCTGCTGAGAGGAGCCCTTTT-CAAGAT--GAGA-ATTTTTAAAGTTGTCAAACCTCTGCTGA
1 CCTCTGCTGAGAGGAG--CTTTTCCAAGATGAGAGATATTTTTAAAGTTGTCAAGCCTCTGCTAA
* * *
11106684 GAGGAGCTTTTTTAAGATAAGAATTTTTAAAGTTATTGAG
64 GAGAAGC-TTTTTAAGATGAGAATTTTTAAAGTTGTTGAG
* * * * *
11106724 CCTCTGCTGAGAGGAGCCATTTT-TAAGAT--GAGA-ATTTTTAAAGTTATCAAGCTTTTACTAA
1 CCTCTGCTGAGAGGAG-C-TTTTCCAAGATGAGAGATATTTTTAAAGTTGTCAAGCCTCTGCTAA
* *
11106785 AAAAAGCTTTTTCAAGATGAGAATTTTTAAAGTTGTTGAG
64 GAGAAGCTTTTT-AAGATGAGAATTTTTAAAGTTGTTGAG
* * * ** * *
11106825 CCTCTGCTGAGAGGAGCTTTTCTAAGATGAGAGATTTTTTTTAAAGTGGTTGAGCCTCTACTGAG
1 CCTCTGCTGAGAGGAGCTTTTCCAAGATGAGAGA-TATTTTTAAAGTTGTCAAGCCTCTGCTAAG
11106890 A-AGAGCTTTTTCAAGATGAGAATTTTTAAAGTTGTTGAG
65 AGA-AGCTTTTT-AAGATGAGAATTTTTAAAGTTGTTGAG
*
11106929 CCTCTGTTGAGAGGAGCTTTTCCAAGATGAGAGA-ATTTTTAAAGTTGTCAAGCCTCTGCTAAGA
1 CCTCTGCTGAGAGGAGCTTTTCCAAGATGAGAGATATTTTTAAAGTTGTCAAGCCTCTGCTAAGA
**
11106993 GGATCCCTTTTTAAGATGAGAATTTTTAAAGTTGTTGAG
66 -GA-AGCTTTTTAAGATGAGAATTTTTAAAGTTGTTGAG
* * ** * * ** * *
11107032 CCTTTACTGAGAGGAGCTTTTTTAAGATGAGAGATTTTTTTTTAAGTTGTTGAGCCTTTGCTCAG
1 CCTCTGCTGAGAGGAGCTTTTCCAAGATGAGAGA-TATTTTTAAAGTTGTCAAGCCTCTGCTAAG
* **
11107097 AAAAGCTTATCCAAGATGAGAA-TTTTAAAGTTGTTGAG
65 AGAAGCTT-TTTAAGATGAGAATTTTTAAAGTTGTTGAG
* * * * * ** * * *
11107135 CCTTTGCTGAGAAGAGTTTTTCCAAGATAAGAGATTTTTTTTAAAGTTGTTGACCCTCTGTTGAG
1 CCTCTGCTGAGAGGAGCTTTTCCAAGATGAGAGA-TATTTTTAAAGTTGTCAAGCCTCTGCTAAG
* * *
11107200 AGGAGCTTTTTCA-A-GAGAA-TTTTAAAATTGTTGAG
65 AGAAGCTTTTTAAGATGAGAATTTTTAAAGTTGTTGAG
*
11107235 CCTCTGCTTAGAGGA
1 CCTCTGCTGAGAGGA
11107250 TCCTTTTAAA
Statistics
Matches: 445, Mismatches: 68, Indels: 27
0.82 0.13 0.05
Matches are distributed among these distances:
99 4 0.01
100 46 0.10
101 97 0.22
102 30 0.07
103 136 0.31
104 108 0.24
105 24 0.05
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (102 bp):
CCTCTGCTGAGAGGAGCTTTTCCAAGATGAGAGATATTTTTAAAGTTGTCAAGCCTCTGCTAAGA
GAAGCTTTTTAAGATGAGAATTTTTAAAGTTGTTGAG
Found at i:11107215 original size:54 final size:50
Alignment explanation
Indices: 11106623--11107249 Score: 615
Period size: 50 Copynumber: 12.3 Consensus size: 50
11106613 CAAGATGAAA
* ** *
11106623 CCTCTGCTGAGAGGAGCCCTTTTCAAGATGAGAATTTTTAAAGTTGTCAAA
1 CCTCTGCTGAGAGGAG-CTTTTTCAAGATGAGAATTTTTAAAGTTGTTGAG
* * *
11106674 CCTCTGCTGAGAGGAGCTTTTTTAAGATAAGAATTTTTAAAGTTATTGAG
1 CCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTTAAAGTTGTTGAG
* **
11106724 CCTCTGCTGAGAGGAGCCATTTTT-AAGATGAGAATTTTTAAAGTTATCAAG
1 CCTCTGCTGAGAGGAG-C-TTTTTCAAGATGAGAATTTTTAAAGTTGTTGAG
* * * * * **
11106775 CTTTTACTAAAAAAAGCTTTTTCAAGATGAGAATTTTTAAAGTTGTTGAG
1 CCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTTAAAGTTGTTGAG
*
11106825 CCTCTGCTGAGAGGAGC-TTTTCTAAGATGAGAGATTTTTTTTAAAGTGGTTGAG
1 CCTCTGCTGAGAGGAGCTTTTTC-AAGATGAGA-A---TTTTTAAAGTTGTTGAG
* *
11106879 CCTCTACTGAGAAGAGCTTTTTCAAGATGAGAATTTTTAAAGTTGTTGAG
1 CCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTTAAAGTTGTTGAG
* * **
11106929 CCTCTGTTGAGAGGAGCTTTTCCAAGATGAGAGAATTTTTAAAGTTGTCAAG
1 CCTCTGCTGAGAGGAGCTTTTTCAAGAT--GAGAATTTTTAAAGTTGTTGAG
* *
11106981 CCTCTGCTAAGAGGATCCCTTTTT-AAGATGAGAATTTTTAAAGTTGTTGAG
1 CCTCTGCTGAGAGGA--GCTTTTTCAAGATGAGAATTTTTAAAGTTGTTGAG
* * * *
11107032 CCTTTACTGAGAGGAGCTTTTTTAAGATGAGAGATTTTTTTTTAAGTTGTTGAG
1 CCTCTGCTGAGAGGAGCTTTTTCAAGATGAGA-A---TTTTTAAAGTTGTTGAG
* * ** * *
11107086 CCTTTGCTCAGAAAAGCTTATCCAAGATGAGAA-TTTTAAAGTTGTTGAG
1 CCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTTAAAGTTGTTGAG
* * * *
11107135 CCTTTGCTGAGAAGAG-TTTTTCCAAGATAAGAGATTTTTTTTAAAGTTGTTGAC
1 CCTCTGCTGAGAGGAGCTTTTT-CAAGAT--GAGA--ATTTTTAAAGTTGTTGAG
* *
11107189 CCTCTGTTGAGAGGAGCTTTTTC-A-A-GAGAA-TTTTAAAATTGTTGAG
1 CCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTTAAAGTTGTTGAG
*
11107235 CCTCTGCTTAGAGGA
1 CCTCTGCTGAGAGGA
11107250 TCCTTTTAAA
Statistics
Matches: 481, Mismatches: 70, Indels: 55
0.79 0.12 0.09
Matches are distributed among these distances:
46 27 0.06
48 3 0.01
49 55 0.11
50 136 0.28
51 88 0.18
52 39 0.08
53 8 0.02
54 115 0.24
55 10 0.02
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (50 bp):
CCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTTAAAGTTGTTGAG
Found at i:11108761 original size:18 final size:19
Alignment explanation
Indices: 11108729--11108764 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
11108719 TATAAAATAA
*
11108729 TAAAAATTAATTAATATAT
1 TAAAAAATAATTAATATAT
11108748 TAAAAAATAA-TAATATA
1 TAAAAAATAATTAATATA
11108765 AATAACGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
TAAAAAATAATTAATATAT
Found at i:11116090 original size:2 final size:2
Alignment explanation
Indices: 11116085--11116134 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
11116075 TCTCTCTCTC
11116085 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11116127 TA TA TA TA
1 TA TA TA TA
11116135 GCTTTCTCTC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Done.