Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 6 of 117
Found at i:557455 original size:40 final size:39
Alignment explanation
Indices: 557358--557455 Score: 101
Period size: 41 Copynumber: 2.5 Consensus size: 39
557348 GTTTAGTATG
* * *
557358 AAAAATATAGTTTA-ATATTAAGGAGATTACGATTTTCA
1 AAAAATATAGTTTATATATAAAAGAGACTACGATTTTCA
* *
557396 AAAAATTATAGTCTAATATATAAAAG-GACTACGATTTTTTA
1 AAAAA-TATAGT-TTATATATAAAAGAGACTACGA-TTTTCA
557437 AAAAATCATAGTTTATATA
1 AAAAAT-ATAGTTTATATA
557456 GATAGAATTG
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
38 5 0.10
39 6 0.12
40 16 0.33
41 22 0.45
ACGTcount: A:0.47, C:0.06, G:0.10, T:0.37
Consensus pattern (39 bp):
AAAAATATAGTTTATATATAAAAGAGACTACGATTTTCA
Found at i:557949 original size:29 final size:30
Alignment explanation
Indices: 557895--557957 Score: 69
Period size: 29 Copynumber: 2.1 Consensus size: 30
557885 GTTTGAATAC
*
557895 AAAAATAATGATGATGAAAAGAATTATAA-T
1 AAAAATAATGATCATGAAAAGAATTA-AACT
*
557925 AAAAA-AATGATCATTAAAA-ACATTAAACT
1 AAAAATAATGATCATGAAAAGA-ATTAAACT
557954 AAAA
1 AAAA
557958 TTACATGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
28 3 0.10
29 21 0.72
30 5 0.17
ACGTcount: A:0.63, C:0.05, G:0.08, T:0.24
Consensus pattern (30 bp):
AAAAATAATGATCATGAAAAGAATTAAACT
Found at i:558013 original size:11 final size:11
Alignment explanation
Indices: 557999--558023 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
557989 CATTTATAAA
557999 ATTAATAAATT
1 ATTAATAAATT
558010 ATTAATAAATT
1 ATTAATAAATT
558021 ATT
1 ATT
558024 TTATGTCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
ATTAATAAATT
Found at i:563829 original size:34 final size:34
Alignment explanation
Indices: 563675--563831 Score: 170
Period size: 34 Copynumber: 4.6 Consensus size: 34
563665 AAAAATGCTG
* * * *
563675 CTATATTAGTGGCATTTGAACCTAGAAAACGCCG
1 CTATATTAGCGGCATTTGTATCTAGAAAACGCCA
* * * * * *
563709 CTATATTAGTGACATTTGAATCTAGAAAATGTCG
1 CTATATTAGCGGCATTTGTATCTAGAAAACGCCA
* **
563743 CTATATTAGCGGCATTTGTATCTAAAAAATACCA
1 CTATATTAGCGGCATTTGTATCTAGAAAACGCCA
* *
563777 TTATATTAGGGGCATTTGTATCTAGAAAACGCCA
1 CTATATTAGCGGCATTTGTATCTAGAAAACGCCA
*
563811 CTATTTTAGCGGCATTTGTAT
1 CTATATTAGCGGCATTTGTAT
563832 ATTTGAGATG
Statistics
Matches: 104, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 104 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (34 bp):
CTATATTAGCGGCATTTGTATCTAGAAAACGCCA
Found at i:572183 original size:189 final size:185
Alignment explanation
Indices: 571741--572185 Score: 516
Period size: 189 Copynumber: 2.4 Consensus size: 185
571731 AGTGAATGCG
* * * * * * **
571741 TTCAATAATTTTCTTTTGAAAAATTTTGAAATTAGTAAAGGCATTTTCCAATGCAAAACGCAATC
1 TTCAATAATTTTCTTTT-AAAATTTTTGAGATTATTAAAGGCATTTTTCAGT-AAAAACGCCTTC
* * * * *
571806 AATATTTCACTACTCAAATTTTAAGACGGTTAGTGAAGGCGTTTATTCTAGAAAATTACCTTCAC
64 AATATTCCACTACTCAAATTTTAAGACAGTTAATGAAGGCGTTAATTCTAGAAAAATACCTTCAC
** * *
571871 TAATTCTTTTTAATTTACGTACATAATTATTAAATGCGTTTTTTGAGAATAAACACT
129 TAATTCCATTTAATTTACGTACATAATTATTAAATGCATTTTTTGAGAACAAACACT
* * * *
571928 TTCAATAATTTTTTTTTTAAAATTTTTGGGATTATTAGAGGCATTTTTCAGTGAAAAACACCTTC
1 TTCAATAA-TTTTCTTTTAAAATTTTTGAGATTATTAAAGGCATTTTTCAGT-AAAAACGCCTTC
* *
571993 AATATTCCACTACTCAAATTTTAAGACAGTTAATGAAGGTGTTAATTCTAGAAAAAAATGCCTTC
64 AATATTCCACTACTCAAATTTTAAGACAGTTAATGAAGGCGTTAATTCTAG--AAAAATACCTTC
* * **
572058 ACTAATTCCATTTAATTTACGTACATAATTATT-GATGGCATTTTTTTAGAACAAA-TGT
127 ACTAATTCCATTTAATTTACGTACATAATTATTAAAT-GCATTTTTTGAGAACAAACACT
* * *
572116 CTTCAATCATTTTCTTTTAAAATTTTTTGAGATTATTAAAGGCGTTTTTTAGTATAAAACGCCTT
1 -TTCAATAATTTTCTTTTAAAA-TTTTTGAGATTATTAAAGGCATTTTTCAGTA-AAAACGCCTT
572181 CAATA
63 CAATA
572186 ATGTTAAAGG
Statistics
Matches: 217, Mismatches: 34, Indels: 12
0.83 0.13 0.05
Matches are distributed among these distances:
187 90 0.41
188 24 0.11
189 103 0.47
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41
Consensus pattern (185 bp):
TTCAATAATTTTCTTTTAAAATTTTTGAGATTATTAAAGGCATTTTTCAGTAAAAACGCCTTCAA
TATTCCACTACTCAAATTTTAAGACAGTTAATGAAGGCGTTAATTCTAGAAAAATACCTTCACTA
ATTCCATTTAATTTACGTACATAATTATTAAATGCATTTTTTGAGAACAAACACT
Found at i:573013 original size:13 final size:13
Alignment explanation
Indices: 572975--573035 Score: 56
Period size: 12 Copynumber: 4.9 Consensus size: 13
572965 TGAATGATAT
572975 TGGTATG-CTGAA
1 TGGTATGTCTGAA
*
572987 TCGTATGT-TGAA
1 TGGTATGTCTGAA
*
572999 TGGTATTTCTGAA
1 TGGTATGTCTGAA
*
573012 TGGTTTG-CTGAA
1 TGGTATGTCTGAA
* *
573024 AGGTGTGTCTGA
1 TGGTATGTCTGA
573036 GCACATTGCT
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
12 26 0.67
13 13 0.33
ACGTcount: A:0.21, C:0.08, G:0.31, T:0.39
Consensus pattern (13 bp):
TGGTATGTCTGAA
Found at i:574043 original size:21 final size:21
Alignment explanation
Indices: 573982--574043 Score: 56
Period size: 21 Copynumber: 2.9 Consensus size: 21
573972 GAAGTATGAT
573982 TTTGTTTATAAGTTTAA-TATTAA
1 TTTGTTTATAA---TAATTATTAA
* *
574005 TTTGTTTATTATATTTATTAA
1 TTTGTTTATAATAATTATTAA
574026 TTTGGTTT-TAATAATTAT
1 TTT-GTTTATAATAATTAT
574044 ATTTCATTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
20 2 0.06
21 17 0.52
22 4 0.12
23 10 0.30
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (21 bp):
TTTGTTTATAATAATTATTAA
Found at i:575567 original size:35 final size:35
Alignment explanation
Indices: 575513--575582 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
575503 ATATATAAAC
*
575513 CAAATATTTTCTGGACATAAATATACAACTGACTT
1 CAAATATTTTCTGGACATAAACATACAACTGACTT
* * * *
575548 CAAATGTTTTTTGGGCATAAACCTACAACTGACTT
1 CAAATATTTTCTGGACATAAACATACAACTGACTT
575583 AACATATACA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (35 bp):
CAAATATTTTCTGGACATAAACATACAACTGACTT
Found at i:575829 original size:62 final size:62
Alignment explanation
Indices: 575672--575913 Score: 156
Period size: 64 Copynumber: 3.8 Consensus size: 62
575662 TAACAAAATG
* * * *** *
575672 TTATTGAAGGCATTTTTAACCAAAACTGCCTTCAATAATC-CCACCTAAAAATATATTG-TGTGG
1 TTATTGAAGGCATTTTTGACAAAAACTGCCTTCAAGAATCTGTTCC---AAATTTATTGAT-TGG
575735 A
62 A
* * * * *
575736 ATATTAAAGGCATTTTAGGATAAAAAC-GCCTTCAAGAATCTGTTCCAAA--TATTGTGTATGGA
1 TTATTGAAGGCATTTT-TGACAAAAACTGCCTTCAAGAATCTGTTCCAAATTTATTG-AT-TGGA
* * * **
575798 TTGTTGAAGGCATTTTTGACAAAAACTGCCTTTAATAATGTCTGTTAAAAATTTATTGATTGGA
1 TTATTGAAGGCATTTTTGACAAAAACTGCCTTCAAGAA--TCTGTTCCAAATTTATTGATTGGA
* * *
575862 TTATTGAAGGCA-CTTTCACACGAAAA-TGCCTTCAAGAATCTGTTCCATATTT
1 TTATTGAAGGCATTTTTGACA--AAAACTGCCTTCAAGAATCTGTTCCAAATTT
575914 TTTTTATGGA
Statistics
Matches: 138, Mismatches: 29, Indels: 24
0.72 0.15 0.13
Matches are distributed among these distances:
60 5 0.04
61 8 0.06
62 41 0.30
63 6 0.04
64 60 0.43
65 13 0.09
66 5 0.04
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.35
Consensus pattern (62 bp):
TTATTGAAGGCATTTTTGACAAAAACTGCCTTCAAGAATCTGTTCCAAATTTATTGATTGGA
Found at i:575869 original size:64 final size:62
Alignment explanation
Indices: 575672--575873 Score: 160
Period size: 64 Copynumber: 3.2 Consensus size: 62
575662 TAACAAAATG
* * * *** *
575672 TTATTGAAGGCATTTTTAACCAAAACTGCCTTCAATAATCCCACCTAAAAATATATTGTGTGGA
1 TTATTGAAGGCATTTTTGACAAAAACTGCCTTCAATAAT-TCTGTTAAAAAT-TATTGTATGGA
* * * * * * *
575736 ATATTAAAGGCATTTTAGGATAAAAAC-GCCTTCAAGAA-TCTGTTCCAAATATT-GTGTATGGA
1 TTATTGAAGGCATTTT-TGACAAAAACTGCCTTCAATAATTCTGTT--AAAAATTATTGTATGGA
* *
575798 TTGTTGAAGGCATTTTTGACAAAAACTGCCTTTAATAATGTCTGTTAAAAATTTATTG-ATTGGA
1 TTATTGAAGGCATTTTTGACAAAAACTGCCTTCAATAAT-TCTGTTAAAAA-TTATTGTA-TGGA
575862 TTATTGAAGGCA
1 TTATTGAAGGCA
575874 CTTTCACACG
Statistics
Matches: 105, Mismatches: 24, Indels: 18
0.71 0.16 0.12
Matches are distributed among these distances:
61 8 0.08
62 35 0.33
63 4 0.04
64 52 0.50
65 6 0.06
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (62 bp):
TTATTGAAGGCATTTTTGACAAAAACTGCCTTCAATAATTCTGTTAAAAATTATTGTATGGA
Found at i:576217 original size:244 final size:243
Alignment explanation
Indices: 575949--576420 Score: 569
Period size: 245 Copynumber: 1.9 Consensus size: 243
575939 TTAGCAAGAA
* * **
575949 AATGCTTTGAATAATCTCTAACAAAATGTTATTGAACG-CATTTTTTACCAAAATCACCTTCAAT
1 AATGCCTTGAATAATCTCTAACAAAATGTTATTGAA-GACATTTTTGAAAAAAATCACCTTCAAT
* * *
576013 AATCCCACC-TAAAAATTTATTGTGTGGAATATTAAAGGC-ATTTGGGGCAAAAAATGCCTTCAA
65 AATCCCACCATAAAAATTTATCGTGTGGAATATTAAA-GCTATTTGGAGCAAAAAACGCCTTCAA
* * * * *
576076 GAATCTGTTCTAATTTTTTTGTACGGATTATTGAAGGCATTTTAAAAAAAAAATCACC-TTCAAT
129 GAATCCGTTCCAACTTTTGTGTACGGATTATTAAAGGCATTTT-AAAAAAAAAT-ACCATT-AAT
576140 AATACC-AACAAAAAATTAATTGAATGGATTATTAAGGGCATTTTTCTACCGGT
191 AAT-CCAAACAAAAAATTAATTGAATGGATTATTAAGGGCATTTTTCTACCGGT
* *
576193 AATGCCTTGAATAATC-CATAACAAAATGTTATTGAAGACGTTTTTGAAAAAAATCACCTTTAAT
1 AATGCCTTGAATAATCTC-TAACAAAATGTTATTGAAGACATTTTTGAAAAAAATCACCTTCAAT
* * ** * * *
576257 AATTCGACCATTCAAATTTATCGTGTGGAATATTAAAGCTGTTTTGAGCTAAAAACGCCTTCAAG
65 AATCCCACCATAAAAATTTATCGTGTGGAATATTAAAGCTATTTGGAGCAAAAAACGCCTTCAAG
** * * * *
576322 AATCCGTTCCAACTTTTGTGTGTGGATTATTAAAGGCATTTTGACAAAAACTACCATTAGTAATC
130 AATCCGTTCCAACTTTTGTGTACGGATTATTAAAGGCATTTTAAAAAAAAATACCATTAATAATC
* * *
576387 CAAACTAAAAATTTATTGATTGGATTATTAAGGG
195 CAAACAAAAAATTAATTGAATGGATTATTAAGGG
576421 TGAGTTAGGC
Statistics
Matches: 192, Mismatches: 30, Indels: 13
0.82 0.13 0.06
Matches are distributed among these distances:
242 2 0.01
243 39 0.20
244 72 0.38
245 79 0.41
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (243 bp):
AATGCCTTGAATAATCTCTAACAAAATGTTATTGAAGACATTTTTGAAAAAAATCACCTTCAATA
ATCCCACCATAAAAATTTATCGTGTGGAATATTAAAGCTATTTGGAGCAAAAAACGCCTTCAAGA
ATCCGTTCCAACTTTTGTGTACGGATTATTAAAGGCATTTTAAAAAAAAATACCATTAATAATCC
AAACAAAAAATTAATTGAATGGATTATTAAGGGCATTTTTCTACCGGT
Found at i:584332 original size:34 final size:36
Alignment explanation
Indices: 584294--584379 Score: 90
Period size: 34 Copynumber: 2.5 Consensus size: 36
584284 TTGTTGCAAA
*
584294 AAAAATTTTGGCAACCAAAATAATGTTGTT-AT-G-T
1 AAAAATTTTGGCAACCAAAAT-ATGTGGTTGATAGAT
* *
584328 AAAAATTTTTGTAA-CAAAATATGTGGTTGATAGAT
1 AAAAATTTTGGCAACCAAAATATGTGGTTGATAGAT
* *
584363 AAAAGTTTTGACAACCA
1 AAAAATTTTGGCAACCA
584380 CATTAAGTCA
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
32 7 0.17
33 8 0.20
34 13 0.32
35 11 0.27
36 2 0.05
ACGTcount: A:0.43, C:0.08, G:0.15, T:0.34
Consensus pattern (36 bp):
AAAAATTTTGGCAACCAAAATATGTGGTTGATAGAT
Found at i:585868 original size:23 final size:24
Alignment explanation
Indices: 585842--585887 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
585832 AACGAGCTTC
585842 CTTTTTT-TTTTTTT-TGCTTTTTT
1 CTTTTTTATTTTTTTAT-CTTTTTT
585865 CTTTTTTATTTTTTTATCTTTTT
1 CTTTTTTATTTTTTTATCTTTTT
585888 AGTGAAAGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 7 0.33
24 13 0.62
25 1 0.05
ACGTcount: A:0.04, C:0.09, G:0.02, T:0.85
Consensus pattern (24 bp):
CTTTTTTATTTTTTTATCTTTTTT
Found at i:587840 original size:36 final size:36
Alignment explanation
Indices: 587793--587861 Score: 138
Period size: 36 Copynumber: 1.9 Consensus size: 36
587783 TTCCCCTTTT
587793 TCCTTAAAAAGTAAGAGCTCACTTAATAGACAACCA
1 TCCTTAAAAAGTAAGAGCTCACTTAATAGACAACCA
587829 TCCTTAAAAAGTAAGAGCTCACTTAATAGACAA
1 TCCTTAAAAAGTAAGAGCTCACTTAATAGACAA
587862 TCATGACGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.45, C:0.20, G:0.12, T:0.23
Consensus pattern (36 bp):
TCCTTAAAAAGTAAGAGCTCACTTAATAGACAACCA
Found at i:596995 original size:144 final size:144
Alignment explanation
Indices: 596773--597086 Score: 461
Period size: 144 Copynumber: 2.2 Consensus size: 144
596763 TTTGACATGC
* *
596773 TTCCTATGGAAGCAGGGATTGAACCAGAGAAATTATTTTGGCTCAACCCAAAGTCAGTGAGAGAT
1 TTCCTATGGAAGCAGGGATTGAACCAGAGAAATTATTATGACTCAACCCAAAGTCAGTGAGAGAT
* * ***
596838 TTAAGCATCCCTATCTCTTGAGGTATCGACCCAGAAAACATATTATGGT-GAAGGTGGAGAGTGG
66 TTAAGCATCCCTATCTCTTGAGGTATCGACCCACAAAACATATTATGATAG-AGGTGGAGAACAG
596902 ATAAACT-GGTCAAGT
130 AT-AACTAGGTCAAGT
* *
596917 TTCTTATGGAAGCAGGGATTGAACCAGAGAAATTATTATGACTCAACTCAAAGTCAGTGAGAGAT
1 TTCCTATGGAAGCAGGGATTGAACCAGAGAAATTATTATGACTCAACCCAAAGTCAGTGAGAGAT
* * *
596982 TTAAGCATCCCTATTTCTTGAGGTATCGATCCACAAAACATATTTTGATAGAGGTGGAGAACAGA
66 TTAAGCATCCCTATCTCTTGAGGTATCGACCCACAAAACATATTATGATAGAGGTGGAGAACAGA
*
597047 TAAGTAGGTCAAGT
131 TAACTAGGTCAAGT
* *
597061 TTCCTACGGAAGCAGGGATAGAACCA
1 TTCCTATGGAAGCAGGGATTGAACCA
597087 CGTAGATAGT
Statistics
Matches: 152, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
143 3 0.02
144 148 0.97
145 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (144 bp):
TTCCTATGGAAGCAGGGATTGAACCAGAGAAATTATTATGACTCAACCCAAAGTCAGTGAGAGAT
TTAAGCATCCCTATCTCTTGAGGTATCGACCCACAAAACATATTATGATAGAGGTGGAGAACAGA
TAACTAGGTCAAGT
Found at i:602852 original size:16 final size:17
Alignment explanation
Indices: 602833--602868 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
602823 TGGATTTTTT
*
602833 TATAAAAAGATTG-CAA
1 TATAAAAAAATTGTCAA
602849 TATAAAAAAATTGTCAA
1 TATAAAAAAATTGTCAA
602866 TAT
1 TAT
602869 TGATATTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.31
Consensus pattern (17 bp):
TATAAAAAAATTGTCAA
Found at i:604153 original size:18 final size:18
Alignment explanation
Indices: 604127--604187 Score: 59
Period size: 18 Copynumber: 3.1 Consensus size: 18
604117 TACATAAAAA
*
604127 CATACTCTTTGAACTAAT
1 CATATTCTTTGAACTAAT
604145 CATATTCTTTGAACTTATTTTAT
1 CATATTCTTTGAAC-TA----AT
*
604168 CATATTTTTTGAACTAAT
1 CATATTCTTTGAACTAAT
604186 CA
1 CA
604188 AATATATTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
18 17 0.47
19 2 0.06
22 2 0.06
23 15 0.42
ACGTcount: A:0.31, C:0.16, G:0.05, T:0.48
Consensus pattern (18 bp):
CATATTCTTTGAACTAAT
Found at i:604791 original size:20 final size:18
Alignment explanation
Indices: 604760--604798 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
604750 TTCCTTTCTT
*
604760 TTTTTTTAATTTAATTAA
1 TTTTTTTAATTTAAATAA
604778 TTTTTTTACCATTTAAATAA
1 TTTTTTTA--ATTTAAATAA
604798 T
1 T
604799 ATTATTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
20 10 0.56
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTTTTAATTTAAATAA
Found at i:605465 original size:18 final size:18
Alignment explanation
Indices: 605438--605472 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
605428 TATTTTATAA
*
605438 TAATATATTTATAAAAAT
1 TAATAAATTTATAAAAAT
*
605456 TAATAAATTTTTAAAAA
1 TAATAAATTTATAAAAA
605473 CTCTATCATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TAATAAATTTATAAAAAT
Found at i:606133 original size:19 final size:20
Alignment explanation
Indices: 606097--606139 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
606087 ATTATTTAAC
*
606097 ATTTATAAAATTAATAAATA
1 ATTTATAAAATCAATAAATA
* *
606117 ATTTA-AAAATCAGTAAATT
1 ATTTATAAAATCAATAAATA
606136 ATTT
1 ATTT
606140 TTATGTAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (20 bp):
ATTTATAAAATCAATAAATA
Found at i:606320 original size:18 final size:17
Alignment explanation
Indices: 606294--606333 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
606284 TATTTTTAGT
* *
606294 TAATTAATTTTTTAATAA
1 TAATAAATTTTATAA-AA
606312 TAATAAATTTTATAAAA
1 TAATAAATTTTATAAAA
606329 TAATA
1 TAATA
606334 TTTTAGTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TAATAAATTTTATAAAA
Found at i:606326 original size:15 final size:15
Alignment explanation
Indices: 606303--606353 Score: 50
Period size: 15 Copynumber: 3.1 Consensus size: 15
606293 TTAATTAATT
606303 TTTTAATAATAATAAA
1 TTTT-ATAATAATAAA
606319 TTTTATAA-AATAATA
1 TTTTATAATAATAA-A
606334 TTTTAGTTAATAATATAA
1 TTTTA--TAATAATA-AA
606352 TT
1 TT
606354 ATAATTTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
14 5 0.17
15 10 0.33
16 4 0.13
17 3 0.10
18 7 0.23
19 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (15 bp):
TTTTATAATAATAAA
Found at i:608360 original size:17 final size:17
Alignment explanation
Indices: 608338--608370 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
608328 TATATGATAT
608338 CAATAAA-ACAACAATAG
1 CAATAAATACAA-AATAG
608355 CAATAAATACAAAATA
1 CAATAAATACAAAATA
608371 TATAGTATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.67, C:0.15, G:0.03, T:0.15
Consensus pattern (17 bp):
CAATAAATACAAAATAG
Found at i:610101 original size:30 final size:32
Alignment explanation
Indices: 610067--610172 Score: 112
Period size: 31 Copynumber: 3.4 Consensus size: 32
610057 AGGTTTAGAG
* *
610067 TTTGGATTTTAAGAGCTTGGATTTTATG-G-T
1 TTTGGATTTTAAGAGTTTGGATTTTAGGAGAT
* *
610097 TTTGGATTTTAGGGGTTTGGA-TTTAGGAGAT
1 TTTGGATTTTAAGAGTTTGGATTTTAGGAGAT
* * *
610128 TTTGAAATTTAAGAGTTTGGA-TTTAAGAGAT
1 TTTGGATTTTAAGAGTTTGGATTTTAGGAGAT
*
610159 TTTGGAATTTAAGA
1 TTTGGATTTTAAGA
610173 TTTAATACTT
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
29 5 0.08
30 19 0.30
31 40 0.62
ACGTcount: A:0.26, C:0.01, G:0.27, T:0.45
Consensus pattern (32 bp):
TTTGGATTTTAAGAGTTTGGATTTTAGGAGAT
Found at i:610123 original size:14 final size:15
Alignment explanation
Indices: 610066--610120 Score: 65
Period size: 15 Copynumber: 3.7 Consensus size: 15
610056 AAGGTTTAGA
* *
610066 GTTTGGATTTTAAGA
1 GTTTGGATTTTAGGG
* *
610081 GCTTGGATTTTATGG
1 GTTTGGATTTTAGGG
*
610096 TTTTGGATTTTAGGG
1 GTTTGGATTTTAGGG
610111 GTTTGGATTT
1 GTTTGGATTT
610121 AGGAGATTTT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.16, C:0.02, G:0.31, T:0.51
Consensus pattern (15 bp):
GTTTGGATTTTAGGG
Found at i:610131 original size:16 final size:15
Alignment explanation
Indices: 610112--610175 Score: 60
Period size: 15 Copynumber: 4.1 Consensus size: 15
610102 ATTTTAGGGG
610112 TTTGGATTTAGGAGAT
1 TTTGGATTTA-GAGAT
* *
610128 TTTGAAATTTA-AGAG
1 TTTG-GATTTAGAGAT
610143 TTTGGATTTAAGAGAT
1 TTTGGATTT-AGAGAT
610159 TTTGGAATTTA-AGAT
1 TTTGG-ATTTAGAGAT
610174 TT
1 TT
610176 AATACTTAAG
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
14 4 0.10
15 14 0.35
16 13 0.32
17 9 0.22
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.45
Consensus pattern (15 bp):
TTTGGATTTAGAGAT
Found at i:610170 original size:17 final size:16
Alignment explanation
Indices: 610112--610172 Score: 72
Period size: 17 Copynumber: 3.8 Consensus size: 16
610102 ATTTTAGGGG
*
610112 TTTGGATTTAGGAGAT
1 TTTGGATTTAAGAGAT
*
610128 TTTGAAATTTAAGAG--
1 TTTG-GATTTAAGAGAT
610143 TTTGGATTTAAGAGAT
1 TTTGGATTTAAGAGAT
610159 TTTGGAATTTAAGA
1 TTTGG-ATTTAAGA
610173 TTTAATACTT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
14 9 0.24
15 4 0.11
16 9 0.24
17 16 0.42
ACGTcount: A:0.33, C:0.00, G:0.25, T:0.43
Consensus pattern (16 bp):
TTTGGATTTAAGAGAT
Found at i:610175 original size:15 final size:15
Alignment explanation
Indices: 610124--610175 Score: 61
Period size: 15 Copynumber: 3.4 Consensus size: 15
610114 TGGATTTAGG
*
610124 AGATTTTGAAATTTA
1 AGATTTTGGAATTTA
*
610139 AGAGTTTGG-ATTTAA
1 AGATTTTGGAATTT-A
610154 GAGATTTTGGAATTTA
1 -AGATTTTGGAATTTA
610170 AGATTT
1 AGATTT
610176 AATACTTAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
14 4 0.13
15 14 0.45
16 9 0.29
17 4 0.13
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (15 bp):
AGATTTTGGAATTTA
Found at i:612909 original size:13 final size:13
Alignment explanation
Indices: 612893--612917 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
612883 GGTTTAGTTC
612893 GACGGTTCGATCT
1 GACGGTTCGATCT
612906 GACGGTTCGATC
1 GACGGTTCGATC
612918 CGATCTGAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.32, T:0.28
Consensus pattern (13 bp):
GACGGTTCGATCT
Found at i:613925 original size:3 final size:3
Alignment explanation
Indices: 613914--613943 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
613904 AAAATTAAAA
613914 AAT ATAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AA
613944 AAAATGGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:614236 original size:47 final size:47
Alignment explanation
Indices: 614139--614471 Score: 357
Period size: 46 Copynumber: 6.9 Consensus size: 47
614129 TTGAAAATTT
* * * *
614139 AAAAGGCTCCTCTTAGTAGAGGCTCAACAACTTTAAAATTTTC-TTG
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTTG
* **
614185 AAAAAGCTCCTTTCAATAGAGGCTCAACAACTTTAAAATTCTCTTTG
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTTG
614232 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATATCTTG
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTC---T-TTG
* * * *
614283 AAAAGGGCTCATCTCAGCAAAGGCTCAATAACTTTAAAAATT-TC-TTG
1 AAAA-AGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATTCTCTTTG
* * *
614330 AAAAAGCTCCCCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATCTA
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTC-TTTG
* *
614378 AAAAAGGGCTCCTCTCAGCAGAGGCTCAACAACTTCAAAATTTTCTCTTAG
1 AAAAA--GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA--TTCTCTTTG
** * * *
614429 AAAGGGCTCCTCTCAGCAGAAGCTTAACAACTTTAAAAATCTC
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTC
614472 ATCTATTTTT
Statistics
Matches: 243, Mismatches: 30, Indels: 27
0.81 0.10 0.09
Matches are distributed among these distances:
45 6 0.02
46 65 0.27
47 54 0.22
48 6 0.02
49 30 0.12
50 32 0.13
51 11 0.05
52 33 0.14
53 6 0.02
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (47 bp):
AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTTG
Found at i:614320 original size:145 final size:145
Alignment explanation
Indices: 614158--614468 Score: 434
Period size: 145 Copynumber: 2.1 Consensus size: 145
614148 CTCTTAGTAG
* ** *
614158 AGGCTCAACAACTTTAAAATTTTCTTGAAAAAGCTCCTTTCAATAGAGGCTCAACAACTTTAAAA
1 AGGCTCAACAACTTTAAAAATTTCTTGAAAAAGCTCCCCTCAACAGAGGCTCAACAACTTTAAAA
* * *
614223 TTCTC-TTTGAAAAA-GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATATCTT-GAA
66 TTCTCATCTAAAAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTCAAAATT-T--TATCTTAG-A
614285 AAGGGCTCATCTCAGCA-A
127 AAGGGCTCATCTCAGCAGA
* *
614303 AGGCTCAATAACTTTAAAAATTTCTTGAAAAAGCTCCCCTCAGCAGAGGCTCAACAACTTTAAAA
1 AGGCTCAACAACTTTAAAAATTTCTTGAAAAAGCTCCCCTCAACAGAGGCTCAACAACTTTAAAA
*
614368 TTCTCATCTAAAAAAGGGCTCCTCTCAGCAGAGGCTCAACAACTTCAAAATTTTCTCTTAGAAAG
66 TTCTCATCTAAAAAA-GGCTCCTCTCAGCAGAGGCTCAACAACTTCAAAATTTTATCTTAGAAAG
*
614433 GGCTCCTCTCAGCAGA
130 GGCTCATCTCAGCAGA
*
614449 A-GCTTAACAACTTTAAAAAT
1 AGGCTCAACAACTTTAAAAAT
614469 CTCATCTATT
Statistics
Matches: 148, Mismatches: 13, Indels: 10
0.87 0.08 0.06
Matches are distributed among these distances:
145 103 0.70
146 10 0.07
147 1 0.01
148 34 0.23
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.27
Consensus pattern (145 bp):
AGGCTCAACAACTTTAAAAATTTCTTGAAAAAGCTCCCCTCAACAGAGGCTCAACAACTTTAAAA
TTCTCATCTAAAAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTCAAAATTTTATCTTAGAAAGG
GCTCATCTCAGCAGA
Found at i:614476 original size:99 final size:96
Alignment explanation
Indices: 614139--614476 Score: 398
Period size: 99 Copynumber: 3.5 Consensus size: 96
614129 TTGAAAATTT
* * * * * *
614139 AAAAGGCTCCTCTTAGTAGAGGCTCAACAACTTTAAAATTTTC-T-TGAAAAA--GCTCCTTTCA
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATCTAAAAAAGGGCTCCTCTCA
**
614200 ATAGAGGCTCAACAACTTTAAAATTCTCTTTG
66 GCAGAGGCTCAACAACTTTAAAATTCTC-TTG
** *
614232 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATATCTTGAAAAGGGCTCATCT
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTC--ATCTAAAAAAGGGCTCCTCT
* *
614297 CAGCAAAGGCTCAATAACTTTAAAAATT-TCTTG
64 CAGCAGAGGCTCAACAACTTT-AAAATTCTCTTG
*
614330 AAAAAGCTCCCCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATCTAAAAAAGGGCTCCTCTCA
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATCTAAAAAAGGGCTCCTCTCA
*
614395 GCAGAGGCTCAACAACTTCAAAATTTTCTCTTAG
66 GCAGAGGCTCAACAACTTTAAAA--TTCTCTT-G
** * * *
614429 AAAGGGCTCCTCTCAGCAGAAGCTTAACAACTTTAAAAATCTCATCTA
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATCTA
614477 TTTTTAAATT
Statistics
Matches: 209, Mismatches: 25, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
93 39 0.19
95 4 0.02
96 36 0.17
97 7 0.03
98 49 0.23
99 68 0.33
100 6 0.03
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.28
Consensus pattern (96 bp):
AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATCTAAAAAAGGGCTCCTCTCA
GCAGAGGCTCAACAACTTTAAAATTCTCTTG
Found at i:621920 original size:113 final size:113
Alignment explanation
Indices: 621722--621948 Score: 436
Period size: 113 Copynumber: 2.0 Consensus size: 113
621712 TCTCAACAAG
621722 TCGAGGATACAAATCTGTGTATATCATGGAAATGAGATCAAAAGTGAGTTTTTCTTGGATATTTC
1 TCGAGGATACAAATCTGTGTATATCATGGAAATGAGATCAAAAGTGAGTTTTTCTTGGATATTTC
621787 TTGGGGCTCTTAAACCACTATTAGGTTTCCATTCTGGTTTTGTAGGTA
66 TTGGGGCTCTTAAACCACTATTAGGTTTCCATTCTGGTTTTGTAGGTA
*
621835 TCGAGGATACAAATCTGTGTATGTCATGGAAATGAGATCAAAAGTGAGTTTTTCTTGGATATTTC
1 TCGAGGATACAAATCTGTGTATATCATGGAAATGAGATCAAAAGTGAGTTTTTCTTGGATATTTC
*
621900 TTGGGGCTCTTAGACCACTATTAGGTTTCCATTCTGGTTTTGTAGGTA
66 TTGGGGCTCTTAAACCACTATTAGGTTTCCATTCTGGTTTTGTAGGTA
621948 T
1 T
621949 AGTAAGACGA
Statistics
Matches: 112, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
113 112 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.38
Consensus pattern (113 bp):
TCGAGGATACAAATCTGTGTATATCATGGAAATGAGATCAAAAGTGAGTTTTTCTTGGATATTTC
TTGGGGCTCTTAAACCACTATTAGGTTTCCATTCTGGTTTTGTAGGTA
Found at i:626285 original size:16 final size:16
Alignment explanation
Indices: 626255--626297 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
626245 ATGTGTGTGA
626255 ATTTTTTTTGTTTTTG
1 ATTTTTTTTGTTTTTG
*
626271 ATTTGTTTTT-TTTTTT
1 ATTT-TTTTTGTTTTTG
626287 ACTTTTTTTTG
1 A-TTTTTTTTG
626298 GTTGAAAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
16 15 0.65
17 8 0.35
ACGTcount: A:0.07, C:0.02, G:0.09, T:0.81
Consensus pattern (16 bp):
ATTTTTTTTGTTTTTG
Found at i:627042 original size:12 final size:12
Alignment explanation
Indices: 627025--627055 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
627015 TTTTCAAAAA
627025 TTTTATTAATTG
1 TTTTATTAATTG
*
627037 TTTTATTAATTT
1 TTTTATTAATTG
627049 TTTTATT
1 TTTTATT
627056 TTTAATTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (12 bp):
TTTTATTAATTG
Found at i:627272 original size:18 final size:20
Alignment explanation
Indices: 627229--627273 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
627219 TCTTCTCATT
*
627229 TTTATTACTTATATTTTTAA
1 TTTATTAATTATATTTTTAA
*
627249 TATATTAATTA-ATTTTT-A
1 TTTATTAATTATATTTTTAA
627267 TTTATTA
1 TTTATTA
627274 CTAACAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 7 0.32
19 6 0.27
20 9 0.41
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTATTAATTATATTTTTAA
Found at i:627318 original size:208 final size:209
Alignment explanation
Indices: 627099--627480 Score: 508
Period size: 208 Copynumber: 1.8 Consensus size: 209
627089 GTATTGAAGT
* * * * *
627099 TTTTCTATAAATATTCCAATACACTGATAATATTTAAAAAAAA-TCTTTTCACCTAGGGATTTCT
1 TTTTCTATAAATACTCCAATACACTGATAATATTTAAAAAAAATTCTTCTCACATAGAGATTTCG
* * * * *
627163 TAAAGCATCTCTGCTCGGAATACTTTTAGAATCTCATTATTGGAT-AAAA-TTTCTTTTCTTCTC
66 T-AAGCATCACTACTCGGAATACCTTTA-AATCTCATCATTAGATAAAAATTTTCTTTTCTT-TC
* *
627226 A-TTTTTATTACTTATATTTTTAATATATT-AATTAATTTTTAT-TTATTACTAACAAAAAGAAA
128 ATTTTTTATTACTT-TAGTATT-AT-TATTAAATTAATTTTTATATTATTACTAACAAAAAGAAA
627288 ATTTTTATTATATTGAAAAA
190 ATTTTTATTATATTGAAAAA
* *
627308 TTTT-TATAAATACTCCAATACACTGGTAGTATTTAAAAAAAATTCTTCTCACATAGAGATTTCG
1 TTTTCTATAAATACTCCAATACACTGATAATATTTAAAAAAAATTCTTCTCACATAGAGATTTCG
* *
627372 TAGGCATCACTACTCGTAATACCTTTAAATCTCATCATTAGATAAAAATTTTCTTTTCTTTCATT
66 TAAGCATCACTACTCGGAATACCTTTAAATCTCATCATTAGATAAAAATTTTCTTTTCTTTCATT
*
627437 TTTTATTACTTTAGTATTATTATTAAATTTATTTTTATATTATT
131 TTTTATTACTTTAGTATTATTATTAAATTAATTTTTATATTATT
627481 GTTTTTAAAG
Statistics
Matches: 150, Mismatches: 17, Indels: 13
0.83 0.09 0.07
Matches are distributed among these distances:
206 4 0.03
207 28 0.19
208 73 0.49
209 45 0.30
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.46
Consensus pattern (209 bp):
TTTTCTATAAATACTCCAATACACTGATAATATTTAAAAAAAATTCTTCTCACATAGAGATTTCG
TAAGCATCACTACTCGGAATACCTTTAAATCTCATCATTAGATAAAAATTTTCTTTTCTTTCATT
TTTTATTACTTTAGTATTATTATTAAATTAATTTTTATATTATTACTAACAAAAAGAAAATTTTT
ATTATATTGAAAAA
Found at i:628218 original size:20 final size:22
Alignment explanation
Indices: 628181--628231 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
628171 CGGTGAGAAT
**
628181 TTTTTTTTTGTATTCTGA-CCC
1 TTTTTTTTTGTAAACTGACCCC
628202 TTTTTTTTT-TAAACTGACCCC
1 TTTTTTTTTGTAAACTGACCCC
*
628223 CTTTTTTTT
1 TTTTTTTTT
628232 CGTACAGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 6 0.23
21 20 0.77
ACGTcount: A:0.12, C:0.20, G:0.06, T:0.63
Consensus pattern (22 bp):
TTTTTTTTTGTAAACTGACCCC
Found at i:628677 original size:3 final size:3
Alignment explanation
Indices: 628659--628699 Score: 66
Period size: 3 Copynumber: 13.7 Consensus size: 3
628649 AAATTAAATA
628659 AAT ATAT AAT -AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
628700 ATGGTGTTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.06
3 31 0.86
4 3 0.08
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:628776 original size:12 final size:12
Alignment explanation
Indices: 628755--628799 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
628745 TTTTTAATTT
*
628755 TTAATGTTATTA
1 TTAATATTATTA
628767 TTAATATTATTA
1 TTAATATTATTA
* *
628779 TCAAAATTATTA
1 TTAATATTATTA
628791 TTAATATTA
1 TTAATATTA
628800 AACTAAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (12 bp):
TTAATATTATTA
Found at i:628808 original size:24 final size:24
Alignment explanation
Indices: 628761--628808 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
628751 ATTTTTAATG
* *
628761 TTATTATTAATATTATTATCAAAA
1 TTATTATTAATATTATAATAAAAA
628785 TTATTATTAATATTA-AACTAAAAA
1 TTATTATTAATATTATAA-TAAAAA
628809 AACGGTAGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (24 bp):
TTATTATTAATATTATAATAAAAA
Found at i:630498 original size:18 final size:18
Alignment explanation
Indices: 630471--630505 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
630461 TATTTTATAA
*
630471 TAATATATTTATAAAAAT
1 TAATAAATTTATAAAAAT
*
630489 TAATAAATTTTTAAAAA
1 TAATAAATTTATAAAAA
630506 CTCTATCATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TAATAAATTTATAAAAAT
Found at i:631392 original size:17 final size:17
Alignment explanation
Indices: 631353--631392 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
631343 GTTAATTAAT
*
631353 TTTTTATATAATAATAA
1 TTTTTATAAAATAATAA
**
631370 AATTTATAAAATAATAA
1 TTTTTATAAAATAATAA
631387 TTTTTA
1 TTTTTA
631393 GTTCATAATA
Statistics
Matches: 18, Mismatches: 5, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTTTTATAAAATAATAA
Found at i:633530 original size:49 final size:49
Alignment explanation
Indices: 633473--633569 Score: 185
Period size: 49 Copynumber: 2.0 Consensus size: 49
633463 TTATGCATCA
633473 GCTATAATTTTATATATTGATAATGAAAATTTTAAAATTTAAAAATGAT
1 GCTATAATTTTATATATTGATAATGAAAATTTTAAAATTTAAAAATGAT
*
633522 GCTATAATTTTATATATTGATAATGAAATTTTTAAAATTTAAAAATGA
1 GCTATAATTTTATATATTGATAATGAAAATTTTAAAATTTAAAAATGA
633570 GATAAGGGAG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.43
Consensus pattern (49 bp):
GCTATAATTTTATATATTGATAATGAAAATTTTAAAATTTAAAAATGAT
Found at i:633627 original size:20 final size:22
Alignment explanation
Indices: 633588--633627 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
633578 AGTTGGCACA
*
633588 AATTTATTTAATTTTAATAATT
1 AATTTATTTAATTCTAATAATT
633610 AATTT-TTTAA-TCTAATAA
1 AATTTATTTAATTCTAATAA
633628 ATATATTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 5 0.29
22 5 0.29
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (22 bp):
AATTTATTTAATTCTAATAATT
Found at i:634496 original size:20 final size:22
Alignment explanation
Indices: 634457--634502 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
634447 GGTGTTAATT
*
634457 TTAATATAAATGGTTATATTTA
1 TTAATATAAATAGTTATATTTA
634479 TTAATATAAATAG-T-TATTTA
1 TTAATATAAATAGTTATATTTA
634499 TTAA
1 TTAA
634503 AAACTTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 10 0.43
21 1 0.04
22 12 0.52
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (22 bp):
TTAATATAAATAGTTATATTTA
Found at i:636747 original size:6 final size:6
Alignment explanation
Indices: 636738--636859 Score: 83
Period size: 6 Copynumber: 19.5 Consensus size: 6
636728 TCTATTTTCT
636738 TTTTTA -TTTTA TTTTTGTA TTTTATA TTTTTA -TTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA -TTTT-TA TTTT-TA TTTTTA TTTTTA TTTTTA TTTTTA
* * *
636787 TTTTTA TTATTATTA TTGTTT- TTTTTA TATATA TTTTT- CTTTTA TTTTTA
1 TTTTTA -T-TT-TTA TT-TTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
*
636837 -TCTTA TGTATTTA TTATTTA TTT
1 TTTTTA T-T-TTTA TT-TTTA TTT
636860 ATTACTACTA
Statistics
Matches: 94, Mismatches: 9, Indels: 26
0.73 0.07 0.20
Matches are distributed among these distances:
5 21 0.22
6 34 0.36
7 26 0.28
8 10 0.11
9 3 0.03
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTTTA
Found at i:636760 original size:18 final size:17
Alignment explanation
Indices: 636738--636835 Score: 64
Period size: 17 Copynumber: 5.9 Consensus size: 17
636728 TCTATTTTCT
636738 TTTTTATTTTATTTTTG
1 TTTTTATTTTATTTTTG
636755 TATTTTA---TATTTTT-
1 T-TTTTATTTTATTTTTG
* *
636769 ATTTTATTTTTATTTTTA
1 TTTTTA-TTTTATTTTTG
*
636787 TTTTTATTATTATTATTG
1 TTTTTATT-TTATTTTTG
* * *
636805 -TTTT-TTTTATATATA
1 TTTTTATTTTATTTTTG
*
636820 TTTTTCTTTTATTTTT
1 TTTTTATTTTATTTTT
636836 ATCTTATGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 18
0.69 0.11 0.20
Matches are distributed among these distances:
13 5 0.08
15 12 0.19
16 6 0.10
17 22 0.35
18 17 0.27
ACGTcount: A:0.18, C:0.01, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTTATTTTATTTTTG
Found at i:636872 original size:50 final size:50
Alignment explanation
Indices: 636741--636863 Score: 121
Period size: 50 Copynumber: 2.5 Consensus size: 50
636731 ATTTTCTTTT
* * * *
636741 TTATT-TTATTTTTGTATTT-TATATTTTTATTTTATTTTTATTTTTATTT
1 TTATTATTATTATTGTATTTAT-TATATATATTTTATTTTTATTTTTATTC
* *
636790 TTATTATTATTATTGTTTTTTTTATATATATTTT-TCTTTTATTTTTA-TC
1 TTATTATTATTATTGTATTTATTATATATATTTTAT-TTTTATTTTTATTC
636839 TTATGTATTTATTATT-TATTTATTA
1 TTAT-TA-TTATTATTGTATTTATTA
636864 CTACTATTTA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
49 11 0.18
50 42 0.68
51 9 0.15
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (50 bp):
TTATTATTATTATTGTATTTATTATATATATTTTATTTTTATTTTTATTC
Found at i:637014 original size:7 final size:7
Alignment explanation
Indices: 637002--637027 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
636992 TTCATTAATA
637002 TTTTTAT
1 TTTTTAT
637009 TTTTTAT
1 TTTTTAT
637016 TTTTTAT
1 TTTTTAT
637023 TTTTT
1 TTTTT
637028 TTATTTATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTAT
Found at i:637913 original size:5 final size:5
Alignment explanation
Indices: 637896--637978 Score: 50
Period size: 5 Copynumber: 16.8 Consensus size: 5
637886 TTAAATATTC
* * *
637896 TTTTA TCTTTA TTTTA TTTTTA TTTTTG TTTTA -CTTA TTTT- TATT-
1 TTTTA T-TTTA TTTTA -TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA
* *
637941 TTTTA TTTTTC TTTTA TTTTG TTTTA --TTA TTTTA TTTT
1 TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
637979 CTTTAAATAA
Statistics
Matches: 61, Mismatches: 10, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
3 3 0.05
4 9 0.15
5 30 0.49
6 19 0.31
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:637916 original size:6 final size:6
Alignment explanation
Indices: 637896--637978 Score: 57
Period size: 6 Copynumber: 13.5 Consensus size: 6
637886 TTAAATATTC
* *
637896 TTTTAT CTTTA- TTTTAT TTTTAT TTTTGTT TTACTTAT TTTTATT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTT-AT TT--TTAT TTTTA-T TTTTAT
*
637947 TTTT-C TTTTAT TTTGT-T TTATTA- TTTTAT TTT
1 TTTTAT TTTTAT TTT-TAT TT-TTAT TTTTAT TTT
637979 CTTTAAATAA
Statistics
Matches: 61, Mismatches: 6, Indels: 20
0.70 0.07 0.23
Matches are distributed among these distances:
5 11 0.18
6 34 0.56
7 11 0.18
8 3 0.05
9 2 0.03
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTTAT
Found at i:637935 original size:15 final size:14
Alignment explanation
Indices: 637907--637978 Score: 62
Period size: 15 Copynumber: 5.2 Consensus size: 14
637897 TTTATCTTTA
637907 TTTTA-TTT-TTAT
1 TTTTATTTTATTAT
*
637919 TTTTGTTTTACTTAT
1 TTTTATTTTA-TTAT
637934 TTTTATTTT-TTAT
1 TTTTATTTTATTAT
* *
637947 TTTTCTTTTATTTT
1 TTTTATTTTATTAT
637961 GTTTTATTATT-TTAT
1 -TTTTATT-TTATTAT
637976 TTT
1 TTT
637979 CTTTAAATAA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
12 4 0.08
13 15 0.31
14 6 0.12
15 21 0.44
16 2 0.04
ACGTcount: A:0.14, C:0.03, G:0.03, T:0.81
Consensus pattern (14 bp):
TTTTATTTTATTAT
Found at i:637935 original size:21 final size:20
Alignment explanation
Indices: 637909--637978 Score: 78
Period size: 21 Copynumber: 3.6 Consensus size: 20
637899 TATCTTTATT
637909 TTATTTTTATTTTTGTTTTA
1 TTATTTTTATTTTTGTTTTA
637929 CTTATTTTTATTTTT-TATTT-
1 -TTATTTTTATTTTTGT-TTTA
*
637949 TT-CTTTTA-TTTTGTTTTA
1 TTATTTTTATTTTTGTTTTA
637967 TTA-TTTTATTTT
1 TTATTTTTATTTT
637979 CTTTAAATAA
Statistics
Matches: 43, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
17 7 0.16
18 13 0.30
19 5 0.12
20 1 0.02
21 17 0.40
ACGTcount: A:0.14, C:0.03, G:0.03, T:0.80
Consensus pattern (20 bp):
TTATTTTTATTTTTGTTTTA
Found at i:637943 original size:28 final size:28
Alignment explanation
Indices: 637893--637982 Score: 96
Period size: 28 Copynumber: 3.2 Consensus size: 28
637883 TTATTAAATA
* *
637893 TTCTTTTATCTTTATTTTA-TTTTTATTT
1 TTCTTTTAT-TATGTTTTATTTTTTATTT
*
637921 TTGTTTTACTTAT-TTTTATTTTTTATTT
1 TTCTTTTA-TTATGTTTTATTTTTTATTT
*
637949 TTCTTTTATTTTGTTTTATTATTTTA-TT
1 TTCTTTTATTATGTTTTATT-TTTTATTT
637977 TTCTTT
1 TTCTTT
637983 AAATAAAATC
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
27 8 0.15
28 40 0.74
29 6 0.11
ACGTcount: A:0.13, C:0.06, G:0.02, T:0.79
Consensus pattern (28 bp):
TTCTTTTATTATGTTTTATTTTTTATTT
Found at i:640822 original size:21 final size:21
Alignment explanation
Indices: 640798--641082 Score: 264
Period size: 21 Copynumber: 12.8 Consensus size: 21
640788 CTAAATCCTC
640798 AAATGAGAATCTTTGAGTCTT
1 AAATGAGAATCTTTGAGTCTT
* *
640819 AAATGAAAATCTTTAAGACGTTTT
1 AAATGAGAATCTTT--GA-GTCTT
* *
640843 CAAGTGACAATCTTTGAGTCTT
1 -AAATGAGAATCTTTGAGTCTT
* *
640865 AAATGAGAATCTTTAATATGTATT
1 AAATGAGAATCTTT--GA-GTCTT
*
640889 CAAATGAGAATCTTTGAGTTTT
1 -AAATGAGAATCTTTGAGTCTT
* * *
640911 AAATGAGAATTTTTAAGACATTTT
1 AAATGAGAATCTTT--GA-GTCTT
* *
640935 CAAATGAGAATCTTAGAGTCAT
1 -AAATGAGAATCTTTGAGTCTT
640957 AAATGAGAATCTTTGAGTCTT
1 AAATGAGAATCTTTGAGTCTT
*
640978 AAATGAGAATCTTTAAGACGTTTT
1 AAATGAGAATCTTT--GA-GTCTT
*
641002 CAAATGAGAACCTTTGAGTCTT
1 -AAATGAGAATCTTTGAGTCTT
641024 AAATGAGAATCTTTGAGTCTT
1 AAATGAGAATCTTTGAGTCTT
* * *
641045 AAATGAGAATTTTTTAGTTTT
1 AAATGAGAATCTTTGAGTCTT
*
641066 AAATGAAAATCTTTGAG
1 AAATGAGAATCTTTGAG
641083 AATCTGTGAG
Statistics
Matches: 218, Mismatches: 30, Indels: 32
0.78 0.11 0.11
Matches are distributed among these distances:
21 123 0.56
22 14 0.06
23 14 0.06
24 16 0.07
25 51 0.23
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.38
Consensus pattern (21 bp):
AAATGAGAATCTTTGAGTCTT
Found at i:640876 original size:46 final size:45
Alignment explanation
Indices: 640796--641054 Score: 287
Period size: 46 Copynumber: 5.7 Consensus size: 45
640786 TCCTAAATCC
* *
640796 TCAAATGAGAATCTTTGAGTCTTAAATGAAAATCTTTAAGACGTTT
1 TCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGA-GTCT
* * * *
640842 TCAAGTGACAATCTTTGAGTCTTAAATGAGAATCTTTAATATGTAT
1 TCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGA-GTCT
* * * *
640888 TCAAATGAGAATCTTTGAGTTTTAAATGAGAATTTTTAAGACATTT
1 TCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGA-GTCT
* *
640934 TCAAATGAGAATCTTAGAGTCATAAATGAGAATCTTT--GAGTCT
1 TCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGAGTCT
* *
640977 T-AAATGAGAATCTTTAAGACGTTTTCAAATGAGAACCTTT--GAGTCT
1 TCAAATGAGAATCTTT--GA-GTCTT-AAATGAGAATCTTTAAGAGTCT
641023 T-AAATGAGAATCTTTGAGTCTTAAATGAGAAT
1 TCAAATGAGAATCTTTGAGTCTTAAATGAGAAT
641055 TTTTTAGTTT
Statistics
Matches: 183, Mismatches: 26, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
42 22 0.12
43 7 0.04
44 6 0.03
45 3 0.02
46 145 0.79
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (45 bp):
TCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGAGTCT
Found at i:640877 original size:67 final size:66
Alignment explanation
Indices: 640796--641082 Score: 298
Period size: 67 Copynumber: 4.3 Consensus size: 66
640786 TCCTAAATCC
* * *
640796 TCAAATGAGAATCTTTGAGTCTTAAATGAAAATCTTTAAGACGTTTTCAAGTGACAATCTTT-GA
1 TCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTT--GA-GTTTT-AAATGAGAATCTTTAGA
*
640860 -GTCT
62 CGTTT
* * *
640864 T-AAATGAGAATCTTTAATATGTATTCAAATGAGAATCTTTGAGTTTTAAATGAGAATTTTTAAG
1 TCAAATGAGAATCTTT--GA-GTCTT-AAATGAGAATCTTTGAGTTTTAAATGAGAATCTTT-AG
*
640928 ACATTT
61 ACGTTT
* * *
640934 TCAAATGAGAATCTTAGAGTCATAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGACGT
1 TCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTGAGTTTTAAATGAGAATCTTT-AGACGT
640999 TT
65 TT
* * **
641001 TCAAATGAGAACCTTTGAGTCTTAAATGAGAATCTTTGAGTCTTAAATGAGAAT-TTTTTA-GTT
1 TCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTGAGTTTTAAATGAGAATCTTTAGACGTT
641064 T
66 T
*
641065 T-AAATGAAAATCTTTGAG
1 TCAAATGAGAATCTTTGAG
641083 AATCTGTGAG
Statistics
Matches: 189, Mismatches: 22, Indels: 21
0.81 0.09 0.09
Matches are distributed among these distances:
63 15 0.08
64 5 0.03
65 1 0.01
66 3 0.02
67 117 0.62
68 9 0.05
69 6 0.03
70 7 0.04
71 26 0.14
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.38
Consensus pattern (66 bp):
TCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTGAGTTTTAAATGAGAATCTTTAGACGTT
T
Found at i:641381 original size:16 final size:16
Alignment explanation
Indices: 641360--641421 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
641350 TTGCAATTTA
641360 TCTTGCAAATCTAAAT
1 TCTTGCAAATCTAAAT
*
641376 TCTTGCATATCTGAAAT
1 TCTTGCAAATCT-AAAT
**
641393 T-TTGTGAAT-TAAAT
1 TCTTGCAAATCTAAAT
* *
641407 TCTTGTAAAACTAAA
1 TCTTGCAAATCTAAA
641422 ATTTTGATAA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
14 5 0.14
15 7 0.19
16 20 0.54
17 5 0.14
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (16 bp):
TCTTGCAAATCTAAAT
Found at i:641646 original size:40 final size:41
Alignment explanation
Indices: 641591--641689 Score: 101
Period size: 41 Copynumber: 2.4 Consensus size: 41
641581 TTTTATTTTC
* * * *
641591 CAAAGCTGTTATGCCTTTATTTAGATAAG-CTTTCACATTT
1 CAAAGTTGTTGTGCCTCTATTTAGAGAAGCCTTTCACATTT
* * * **
641631 CAAAGTTGTTGTGCCTCTGTTTAGAGGAGCCTTTTATTTTT
1 CAAAGTTGTTGTGCCTCTATTTAGAGAAGCCTTTCACATTT
*
641672 CAAAGTTATTGTGCCTCT
1 CAAAGTTGTTGTGCCTCT
641690 GATTAAATGA
Statistics
Matches: 48, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
40 23 0.48
41 25 0.52
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.43
Consensus pattern (41 bp):
CAAAGTTGTTGTGCCTCTATTTAGAGAAGCCTTTCACATTT
Found at i:641684 original size:41 final size:40
Alignment explanation
Indices: 641628--641746 Score: 157
Period size: 41 Copynumber: 2.9 Consensus size: 40
641618 AGCTTTCACA
641628 TTTCAAAGTTGTTGTGCCTCTGTTTAGAGGAGCCTTTTATT
1 TTTCAAAGTTGTTGTGCCTCTGTTTAGAGGAGCCTTTT-TT
* * * * *
641669 TTTCAAAGTTATTGTGCCTCTGATTAAATGAGTCTTTTTT
1 TTTCAAAGTTGTTGTGCCTCTGTTTAGAGGAGCCTTTTTT
**
641709 TTTCCAAAGTTGTCCTGCCTCTGTTTAGAGGAGCCTTT
1 TTT-CAAAGTTGTTGTGCCTCTGTTTAGAGGAGCCTTT
641747 ATTATAGGAG
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 5 0.08
41 60 0.92
ACGTcount: A:0.18, C:0.17, G:0.19, T:0.45
Consensus pattern (40 bp):
TTTCAAAGTTGTTGTGCCTCTGTTTAGAGGAGCCTTTTTT
Found at i:641874 original size:137 final size:137
Alignment explanation
Indices: 641628--641886 Score: 331
Period size: 137 Copynumber: 1.9 Consensus size: 137
641618 AGCTTTCACA
* ** ** **
641628 TTTCAAAGTTGTTGTGCCTCTGTTTAGAGGAGCCTTTTATTTTTCAAAGTTATTGTGCCTCTGAT
1 TTTCAAAGTTGTTATGCCTCTGTTTAGAAAAGCCTTTTATTTTTCAAAGCCATTAAGCCTCTGAT
* * * *
641693 TAAATGAGTCTTTTTTTTTCCAAAGTTGTCCTGCCTCTGTTTAGAGGAGCCTTTATTATAGGAGC
66 TAAAGGAGCCTTTTTTTTTCCAAAGTGGTCCAGCCTCTGTTTAGAGGAGCCTTTATTATAGGAGC
641758 CTTTATT
131 CTTTATT
* * * *
641765 TTTCAAAGTTGTTATGTCTTTGTTTAGAAAAGCCTTTTATTTTTCAAAGCCATTAAGCTTCTGCT
1 TTTCAAAGTTGTTATGCCTCTGTTTAGAAAAGCCTTTTATTTTTCAAAGCCATTAAGCCTCTGAT
* * **
641830 TAGAGGTGCCTTTTATTTTT-CAAAGTGGTTGAGCCTCTGTTTAGAGGAGCCTTTATT
66 TAAAGGAGCCTTTT-TTTTTCCAAAGTGGTCCAGCCTCTGTTTAGAGGAGCCTTTATT
641887 TTTCAAAGTT
Statistics
Matches: 102, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
137 97 0.95
138 5 0.05
ACGTcount: A:0.21, C:0.15, G:0.19, T:0.45
Consensus pattern (137 bp):
TTTCAAAGTTGTTATGCCTCTGTTTAGAAAAGCCTTTTATTTTTCAAAGCCATTAAGCCTCTGAT
TAAAGGAGCCTTTTTTTTTCCAAAGTGGTCCAGCCTCTGTTTAGAGGAGCCTTTATTATAGGAGC
CTTTATT
Found at i:641913 original size:81 final size:83
Alignment explanation
Indices: 641759--641970 Score: 261
Period size: 81 Copynumber: 2.6 Consensus size: 83
641749 TATAGGAGCC
* **
641759 TTTATTTTTCAAAGTTGTT-ATGTCTTTGTTTAGAAAAGCCTTTTATTTTTCAAAGCCATTAAGC
1 TTTATTTTTCAAAGTTGTTGA-GCCTTTGTTTAGAGGAGCC-TTTATTTTTCAAAGCCATTAAGC
* * *
641823 TTCTGCTTAGAGGTGCC-T-
64 CTCTACTTAGAGGAGCCTTA
* * ***
641841 TTTATTTTTCAAAGTGGTTGAGCCTCTGTTTAGAGGAGCCTTTATTTTTCAAAGTTGTTAAGCCT
1 TTTATTTTTCAAAGTTGTTGAGCCTTTGTTTAGAGGAGCCTTTATTTTTCAAAGCCATTAAGCCT
641906 CTACTTAGAGGAGCCTTA
66 CTACTTAGAGGAGCCTTA
*
641924 TTTATTTTTTCAAAGTTGTTGAGCCTTTGCTTAGAGGAG-CTTTATTT
1 TTTA-TTTTTCAAAGTTGTTGAGCCTTTGTTTAGAGGAGCCTTTATTT
641971 ATTTTTCAAA
Statistics
Matches: 112, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
81 34 0.30
82 34 0.30
83 13 0.12
84 31 0.28
ACGTcount: A:0.22, C:0.14, G:0.18, T:0.45
Consensus pattern (83 bp):
TTTATTTTTCAAAGTTGTTGAGCCTTTGTTTAGAGGAGCCTTTATTTTTCAAAGCCATTAAGCCT
CTACTTAGAGGAGCCTTA
Found at i:641949 original size:44 final size:41
Alignment explanation
Indices: 641752--641995 Score: 242
Period size: 41 Copynumber: 5.9 Consensus size: 41
641742 CCTTTATTAT
* * *
641752 AGGAGCC-TTTATTTTTCAAAGTTGTT-ATGTCTTTGTTTAG
1 AGGAGCCTTTTATTTTTCAAAGTTGTTGA-GCCTCTGCTTAG
** *** * *
641792 AAAAGCCTTTTATTTTTCAAAGCCATTAAGCTTCTGCTTAG
1 AGGAGCCTTTTATTTTTCAAAGTTGTTGAGCCTCTGCTTAG
* * *
641833 AGGTGCCTTTTATTTTTCAAAGTGGTTGAGCCTCTGTTTAG
1 AGGAGCCTTTTATTTTTCAAAGTTGTTGAGCCTCTGCTTAG
* *
641874 AGGAGCC-TTTATTTTTCAAAGTTGTTAAGCCTCTACTTAG
1 AGGAGCCTTTTATTTTTCAAAGTTGTTGAGCCTCTGCTTAG
*
641914 AGGAGCCTTATTTATTTTTTCAAAGTTGTTGAGCCTTTGCTTAG
1 AGGAGCC-T-TTTA-TTTTTCAAAGTTGTTGAGCCTCTGCTTAG
* * *
641958 AGGAGCTTTATTTATTTTTCAAAATTATTGAGCCTCTG
1 AGGAGC-CT-TTTATTTTTCAAAGTTGTTGAGCCTCTG
641996 ATCTTAATTT
Statistics
Matches: 167, Mismatches: 30, Indels: 11
0.80 0.14 0.05
Matches are distributed among these distances:
40 41 0.25
41 62 0.37
42 1 0.01
43 25 0.15
44 38 0.23
ACGTcount: A:0.23, C:0.15, G:0.18, T:0.44
Consensus pattern (41 bp):
AGGAGCCTTTTATTTTTCAAAGTTGTTGAGCCTCTGCTTAG
Found at i:642711 original size:20 final size:19
Alignment explanation
Indices: 642688--642736 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
642678 TTGGTATTTT
642688 TTTATTTTTTTTATTATTAA
1 TTTATTTTTTTTATT-TTAA
* * *
642708 TTTATTATATTTATTTTCA
1 TTTATTTTTTTTATTTTAA
642727 TATTATTTTT
1 T-TTATTTTT
642737 GCATGATTAA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTATTTTTTTTATTTTAA
Found at i:648629 original size:49 final size:50
Alignment explanation
Indices: 648342--648792 Score: 326
Period size: 49 Copynumber: 8.9 Consensus size: 50
648332 AAGAAAAGAT
* * * * * * *
648342 AATTTTTGAGGTTGTTAAGCTTTTACTTAGATGAACCTTTTTTCAA-ATAAG
1 AATTTTTAAAGTTGTTGAGCCTCTACTTAGA-AAAGCTTTTTT-AAGATAAG
* * * * ** *
648393 AATTTTTATAGCTATTGAGCCTCTGCTTAGAGAAA-CCATTTTAAGATGA-
1 AATTTTTAAAGTTGTTGAGCCTCTACTTAGA-AAAGCTTTTTTAAGATAAG
* ** * *
648442 AATTTTTAAAGTTATTGAGCCTCTACTTAGAGGAGCTCTTTCAAGATAA-
1 AATTTTTAAAGTTGTTGAGCCTCTACTTAGAAAAGCTTTTTTAAGATAAG
*
648491 AATTTTTAAAGTTGTTGAGCCTCTACTTAGAAGAGCTTTTTTAAGATAA-
1 AATTTTTAAAGTTGTTGAGCCTCTACTTAGAAAAGCTTTTTTAAGATAAG
* *
648540 AATTTTTAAAGTTGTTGACCCTCTATTTA-AAAGAGCTTTTTTAAGATAAG
1 AATTTTTAAAGTTGTTGAGCCTCTACTTAGAAA-AGCTTTTTTAAGATAAG
* *
648590 AATTTTTAAAATTGTTTAGCCTCTACTTAGAAAAG-TTTTTTCCAAGGCA-AAG
1 AATTTTTAAAGTTGTTGAGCCTCTACTTAGAAAAGCTTTTTT--AA-G-ATAAG
* * * * *
648642 ATTTTTTTTTTAAAGTTGTTGAACCTCTGCTTAGAAAAGCTTTTTCAAGATGAG
1 A----ATTTTTAAAGTTGTTGAGCCTCTACTTAGAAAAGCTTTTTTAAGATAAG
* * ** ** * * *
648696 ATTTTTTTTAA-TTGTTGAGCCTCTACCAAGATGAGCCTTTTTCATATAAG
1 A-ATTTTTAAAGTTGTTGAGCCTCTACTTAGAAAAGCTTTTTTAAGATAAG
* * * * * *
648746 AATTTTAAAAGTTGTTAAGCCTCTACTAAGAAGAGCATTTTTCAGAT
1 AATTTTTAAAGTTGTTGAGCCTCTACTTAGAAAAGCTTTTTTAAGAT
648793 TTTAAATTTT
Statistics
Matches: 323, Mismatches: 61, Indels: 33
0.77 0.15 0.08
Matches are distributed among these distances:
48 3 0.01
49 140 0.43
50 95 0.29
51 38 0.12
52 5 0.02
53 2 0.01
54 4 0.01
55 2 0.01
56 29 0.09
57 5 0.02
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (50 bp):
AATTTTTAAAGTTGTTGAGCCTCTACTTAGAAAAGCTTTTTTAAGATAAG
Found at i:649255 original size:22 final size:22
Alignment explanation
Indices: 649215--649267 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
649205 AAAAACACAC
*
649215 AAAAAAACAAAATAAAGAAAA-G
1 AAAAAAA-AGAATAAAGAAAAGG
*
649237 AAACAAAAGAATACAAGAAAAGG
1 AAAAAAAAGAATA-AAGAAAAGG
649260 AAAAAAAA
1 AAAAAAAA
649268 CAAATGAGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 5 0.19
22 13 0.50
23 8 0.31
ACGTcount: A:0.79, C:0.06, G:0.11, T:0.04
Consensus pattern (22 bp):
AAAAAAAAGAATAAAGAAAAGG
Found at i:650443 original size:23 final size:24
Alignment explanation
Indices: 650391--650450 Score: 81
Period size: 23 Copynumber: 2.6 Consensus size: 24
650381 AAAGTTTTCA
*
650391 ATATAAT-AAAA-AAAAATTTACT
1 ATATAATAAAAATAAAAATTAACT
*
650413 ATAAAATAAAAATAAAAATTAACT
1 ATATAATAAAAATAAAAATTAACT
650437 AT-TAATAAAAATAA
1 ATATAATAAAAATAA
650451 GGTGATAACA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 6 0.18
23 15 0.45
24 12 0.36
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.28
Consensus pattern (24 bp):
ATATAATAAAAATAAAAATTAACT
Found at i:652677 original size:12 final size:12
Alignment explanation
Indices: 652650--652687 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
652640 AATTTTTTAT
652650 TAAAAATATTAAA
1 TAAAAAT-TTAAA
*
652663 TAAAAATTTAGA
1 TAAAAATTTAAA
652675 TAAAAATTTAAA
1 TAAAAATTTAAA
652687 T
1 T
652688 TGATGAAGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 16 0.70
13 7 0.30
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (12 bp):
TAAAAATTTAAA
Found at i:662580 original size:72 final size:72
Alignment explanation
Indices: 662482--662803 Score: 484
Period size: 72 Copynumber: 4.5 Consensus size: 72
662472 CACAAGCTTC
* * * *
662482 GTCATGTTTCCAATTGAAGCAGGGATTGAACCAGAAAACATATTTTGATCAAGGTAGAGAGTAGA
1 GTCAAGTTTCCTATGGAAGCAGGGATTGAACCAGAAAACATATTTTGATGAAGGTAGAGAGTAGA
* *
662547 TAAGGTT
66 TAAGCTG
* * * * **
662554 GTCAATTTTCCTATGGAAGCAGGGATTGAACCAGAGAACATATTTAGAGGAAGGGCGAGAGTAGA
1 GTCAAGTTTCCTATGGAAGCAGGGATTGAACCAGAAAACATATTTTGATGAAGGTAGAGAGTAGA
*
662619 CAAGCTG
66 TAAGCTG
* *
662626 GTCAAGTTTCCTATGGATGCAGGGATTGAACCAGAAAACATATTTTGATGAAGGTTGAGAGTAGA
1 GTCAAGTTTCCTATGGAAGCAGGGATTGAACCAGAAAACATATTTTGATGAAGGTAGAGAGTAGA
662691 TAAGCTG
66 TAAGCTG
*
662698 GTCAAGTTTCCTATGGAAGCAGGGATTGAACCAGAAAACATATTTCGATGAAGGTAGAGAGTAGA
1 GTCAAGTTTCCTATGGAAGCAGGGATTGAACCAGAAAACATATTTTGATGAAGGTAGAGAGTAGA
662763 TAAGCTG
66 TAAGCTG
662770 GTCAAGTTTCCTATGGAAGCAGGGA-TGACACCAG
1 GTCAAGTTTCCTATGGAAGCAGGGATTGA-ACCAG
662804 TGAGATTATT
Statistics
Matches: 225, Mismatches: 24, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
71 3 0.01
72 222 0.99
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (72 bp):
GTCAAGTTTCCTATGGAAGCAGGGATTGAACCAGAAAACATATTTTGATGAAGGTAGAGAGTAGA
TAAGCTG
Found at i:664537 original size:18 final size:18
Alignment explanation
Indices: 664514--664552 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
664504 TGCTTAGCTA
* * *
664514 ATTTTTTTATTAATATAT
1 ATTTTTTCAATAAAATAT
664532 ATTTTTTCAATAAAATAT
1 ATTTTTTCAATAAAATAT
664550 ATT
1 ATT
664553 AATTTTAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTTTTTCAATAAAATAT
Found at i:665852 original size:17 final size:17
Alignment explanation
Indices: 665812--665852 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
665802 TTTAGTTATT
*
665812 AATTTTATATAATAATA
1 AATTTTATAAAATAATA
*
665829 AAATTTATAAAATAATA
1 AATTTTATAAAATAATA
*
665846 ATTTTTA
1 AATTTTA
665853 ATTTATAATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTTTATAAAATAATA
Found at i:667063 original size:3 final size:3
Alignment explanation
Indices: 667055--667080 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
667045 GGCTCAATCT
667055 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
667081 TCTTTCATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:667808 original size:5 final size:5
Alignment explanation
Indices: 667798--667892 Score: 52
Period size: 5 Copynumber: 17.8 Consensus size: 5
667788 TAGGTTTCCT
*
667798 TTTTA TTTTA TTTTA TTTTTCA TTTTCA TTTT- TATTTA TTTTAGA TTTTC
1 TTTTA TTTTA TTTTA -TTTT-A TTTT-A TTTTA T-TTTA TTTT--A TTTTA
* * *
667848 TTATT- TTCTA TTTCA TTTTA -TTTG TTTTA TTTTTA TTTTTA TTTT
1 TT-TTA TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA -TTTTA TTTT
667893 TTTAAATTTC
Statistics
Matches: 73, Mismatches: 7, Indels: 20
0.73 0.07 0.20
Matches are distributed among these distances:
4 5 0.07
5 34 0.47
6 28 0.38
7 6 0.08
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:667817 original size:6 final size:6
Alignment explanation
Indices: 667797--667893 Score: 60
Period size: 6 Copynumber: 15.8 Consensus size: 6
667787 GTAGGTTTCC
* *
667797 TTTTTA -TTTTA -TTTTA TTTTTCA TTTTCA TTTTTA --TTTA TTTTAGA
1 TTTTTA TTTTTA TTTTTA TTTTT-A TTTTTA TTTTTA TTTTTA TTTT-TA
* *
667843 TTTTCTTA TTTTCTA -TTTCA TTTTATT TGTTTTA TTTTTA TTTTTA TTTTT
1 -TTT-TTA TTTT-TA TTTTTA TTTT-TA T-TTTTA TTTTTA TTTTTA TTTTT
667894 TTAAATTTCA
Statistics
Matches: 72, Mismatches: 8, Indels: 22
0.71 0.08 0.22
Matches are distributed among these distances:
4 4 0.06
5 11 0.15
6 35 0.49
7 14 0.19
8 7 0.10
9 1 0.01
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTTTA
Found at i:667823 original size:23 final size:23
Alignment explanation
Indices: 667803--667866 Score: 65
Period size: 23 Copynumber: 2.6 Consensus size: 23
667793 TTCCTTTTTA
667803 TTTTATTTTATTTTTCATTTTCAT
1 TTTTA-TTTATTTTTCATTTTCAT
**
667827 TTTTATTTATTTTAGATTTTCTTAT
1 TTTTATTTATTTTTCATTTTC--AT
667852 TTTCTATTTCATTTT
1 TTT-TATTT-ATTTT
667867 ATTTGTTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
23 14 0.41
24 5 0.15
25 5 0.15
26 5 0.15
27 5 0.15
ACGTcount: A:0.17, C:0.08, G:0.02, T:0.73
Consensus pattern (23 bp):
TTTTATTTATTTTTCATTTTCAT
Found at i:667906 original size:21 final size:21
Alignment explanation
Indices: 667857--667912 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
667847 CTTATTTTCT
667857 ATTTCA-TTTTATTTGTTTTA
1 ATTTCATTTTTATTTGTTTTA
* *
667877 TTTTTATTTTTATTT-TTTTAA
1 ATTTCATTTTTATTTGTTTT-A
667898 ATTTCATTTATTATT
1 ATTTCATTT-TTATT
667913 ATTATTATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 8 0.28
21 16 0.55
22 5 0.17
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.73
Consensus pattern (21 bp):
ATTTCATTTTTATTTGTTTTA
Found at i:670399 original size:81 final size:80
Alignment explanation
Indices: 670295--670512 Score: 267
Period size: 81 Copynumber: 2.7 Consensus size: 80
670285 AATATGGAGT
* * * *
670295 CATCCATTTCTTTTGGTCTCTCATTTCTATCGTGTTCATGGT-ATCAATTAAATTATTGACCAAA
1 CATCCATTTCTTTTGGCCTCTCATTTTTAACGTGTTCATGGTGCT-AATTAAATTATTGACCAAA
670359 GGATACCCAATAATTG
65 GGATACCCAATAATTG
* * * * * *
670375 TATCCATTTCTTTTTGGCCTCTCATTTTTAACGTATTTATGGTGCTAATTAAATTACTGGCCGAA
1 CATCCATTTC-TTTTGGCCTCTCATTTTTAACGTGTTCATGGTGCTAATTAAATTATTGACCAAA
**
670440 GGATATGCAATAATTG
65 GGATACCCAATAATTG
* * * *
670456 CATCCATTTCTTTTGACTTCTCATTTTTAACGTGTCCATAGTGCTAATTAAATTATT
1 CATCCATTTCTTTTGGCCTCTCATTTTTAACGTGTTCATGGTGCTAATTAAATTATT
670513 AGTCAAAGGA
Statistics
Matches: 116, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
80 49 0.42
81 66 0.57
82 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.13, T:0.43
Consensus pattern (80 bp):
CATCCATTTCTTTTGGCCTCTCATTTTTAACGTGTTCATGGTGCTAATTAAATTATTGACCAAAG
GATACCCAATAATTG
Found at i:671028 original size:13 final size:14
Alignment explanation
Indices: 671006--671043 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
670996 ATTAATTTGA
671006 ATTTTT-TTAAA-C
1 ATTTTTATTAAATC
*
671018 ATTTTTATTAAATT
1 ATTTTTATTAAATC
671032 ATTTTTATTAAA
1 ATTTTTATTAAA
671044 AAAGTTTACT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 6 0.26
13 5 0.22
14 12 0.52
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (14 bp):
ATTTTTATTAAATC
Found at i:671274 original size:22 final size:22
Alignment explanation
Indices: 671226--671275 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
671216 AGCTGACATG
* *
671226 AATTTATTTAATTTTAATAATT
1 AATTTTTTTAATTTTAATAAAT
671248 AATTTTTTTAA-TTTAATAAAT
1 AATTTTTTTAATTTTAATAAAT
671269 ATATTTT
1 A-ATTTT
671276 AGTAGAATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 10 0.40
22 15 0.60
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
AATTTTTTTAATTTTAATAAAT
Found at i:671817 original size:21 final size:21
Alignment explanation
Indices: 671791--671835 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
671781 TATTAATAAC
*
671791 ATTTAAGACTATTAAATTAAT
1 ATTTAAGACTACTAAATTAAT
* * *
671812 ATTTAATATTACTAATTTAAT
1 ATTTAAGACTACTAAATTAAT
671833 ATT
1 ATT
671836 AATTCATATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.49
Consensus pattern (21 bp):
ATTTAAGACTACTAAATTAAT
Found at i:672565 original size:15 final size:14
Alignment explanation
Indices: 672540--672592 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 14
672530 CATCCCTTTT
672540 TATTTTTTATTTAA
1 TATTTTTTATTTAA
672554 TATTTTTATATTTAA
1 TATTTTT-TATTTAA
*
672569 TAAAAATTTTTATTTAA
1 T---ATTTTTTATTTAA
672586 T-TTTTTT
1 TATTTTTT
672593 GTGTGTGGAC
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
13 5 0.15
14 7 0.21
15 8 0.24
17 8 0.24
18 5 0.15
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTTTTTATTTAA
Found at i:672844 original size:17 final size:17
Alignment explanation
Indices: 672822--672870 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
672812 CATCGATCCC
672822 TTTTTTTTATTTAATAA
1 TTTTTTTTATTTAATAA
*
672839 TTTTTTATATTTAATAA
1 TTTTTTTTATTTAATAA
* *
672856 ATATTTTTATTTAAT
1 TTTTTTTTATTTAAT
672871 TTTTTCGCGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTTTTTATTTAATAA
Found at i:674050 original size:12 final size:12
Alignment explanation
Indices: 674033--674057 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
674023 TTAGTTAGAG
674033 AAAAATCAAAAT
1 AAAAATCAAAAT
674045 AAAAATCAAAAT
1 AAAAATCAAAAT
674057 A
1 A
674058 GAAAGGAAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAAATCAAAAT
Found at i:674155 original size:58 final size:59
Alignment explanation
Indices: 674092--674233 Score: 216
Period size: 59 Copynumber: 2.4 Consensus size: 59
674082 TTTTATGTAG
* *
674092 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGAAAAT-TTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATCTGA-TTTCAA
* * *
674150 GGAAAATTGATACTTTCAATTTTTCCTCAAAAATATTTTTTTTGAAACTCTGATTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATCTGATTTCAA
674209 GGAAAATTGATACTTTCAACTTTTC
1 GGAAAATTGATACTTTCAACTTTTC
674234 TTGTCACGGG
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
58 33 0.43
59 41 0.54
60 2 0.03
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATCTGATTTCAA
Found at i:674590 original size:58 final size:58
Alignment explanation
Indices: 674492--674777 Score: 391
Period size: 58 Copynumber: 4.9 Consensus size: 58
674482 GGTCCGTGAC
674492 ATTTTTAAGGAAAATTGATACTTTCAACTTTTTCCC-AAAAATATTTTTTTGAAAATTT
1 ATTTTTAAGGAAAATTGATACTTTCAAC-TTTTCCCTAAAAATATTTTTTTGAAAATTT
* * *
674550 ATTTTTAAGGAAAATTTATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTT
1 ATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTT
* * **
674608 GATTTTCAAGAAAAATTGATACTTTCAACTTTT-CCTCAAAAATCATTTTTTTTTAAATTT
1 -ATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCT-AAAAAT-ATTTTTTTGAAAATTT
***
674668 ATTTTTTAAGGAAAATTGATACTTTCAACTTTT-CCTCAAAAACCCCTTTTTTG-AAATTT
1 A-TTTTTAAGGAAAATTGATACTTTCAACTTTTCCCT-AAAAA-TATTTTTTTGAAAATTT
674727 ATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTG
1 ATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTG
674778 GTTTTTATTT
Statistics
Matches: 202, Mismatches: 19, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
57 14 0.07
58 86 0.43
59 46 0.23
60 56 0.28
ACGTcount: A:0.34, C:0.13, G:0.07, T:0.47
Consensus pattern (58 bp):
ATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTT
Found at i:674824 original size:15 final size:14
Alignment explanation
Indices: 674812--674878 Score: 55
Period size: 15 Copynumber: 4.4 Consensus size: 14
674802 AATAAAAGTG
674812 AAAATAAATAAAGAT
1 AAAA-AAATAAAGAT
674827 AAAAAAATAAAGA-
1 AAAAAAATAAAGAT
* *
674840 AAAGTAAAACAAAAAT
1 AAA--AAAATAAAGAT
674856 AAAAATAAGATAAAGAT
1 -AAAA-AA-ATAAAGAT
674873 AAAAAA
1 AAAAAA
674879 TATTAAATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
13 3 0.07
14 9 0.21
15 15 0.36
16 6 0.14
17 9 0.21
ACGTcount: A:0.78, C:0.01, G:0.07, T:0.13
Consensus pattern (14 bp):
AAAAAAATAAAGAT
Found at i:674835 original size:18 final size:17
Alignment explanation
Indices: 674812--674929 Score: 64
Period size: 18 Copynumber: 6.5 Consensus size: 17
674802 AATAAAAGTG
674812 AAAATAAATAAAGATAAA-
1 AAAATAAA-AAA-ATAAAT
674830 AAAATAAAGAAAAGTAAA-
1 AAAATAAA-AAAA-TAAAT
674848 ACAAA-AATAAAAATAAGAT
1 A-AAATAA-AAAAATAA-AT
674867 AAAGATAAAAAATATTAAAT
1 AAA-ATAAAAAA-A-TAAAT
* ***
674887 AAATCTAATCTAATAAAT
1 AAA-ATAAAAAAATAAAT
*
674905 AAAATAAATAAATAAAT
1 AAAATAAAAAAATAAAT
674922 -AAATAAAA
1 AAAATAAAA
674930 CAAAAACAAA
Statistics
Matches: 80, Mismatches: 11, Indels: 20
0.72 0.10 0.18
Matches are distributed among these distances:
16 7 0.09
17 14 0.17
18 33 0.41
19 11 0.14
20 12 0.15
21 3 0.04
ACGTcount: A:0.73, C:0.03, G:0.04, T:0.20
Consensus pattern (17 bp):
AAAATAAAAAAATAAAT
Found at i:674874 original size:17 final size:16
Alignment explanation
Indices: 674812--674877 Score: 59
Period size: 17 Copynumber: 4.2 Consensus size: 16
674802 AATAAAAGTG
674812 AAAATAAATAAAGAT-
1 AAAATAAATAAAGATA
674827 AAAA-AAATAAAG--A
1 AAAATAAATAAAGATA
* * *
674840 AAAGTAAAACAAAAATA
1 AAAAT-AAATAAAGATA
674857 AAAATAAGATAAAGATA
1 AAAATAA-ATAAAGATA
674874 AAAA
1 AAAA
674878 ATATTAAATA
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
13 3 0.08
14 8 0.21
15 10 0.26
16 2 0.05
17 16 0.41
ACGTcount: A:0.77, C:0.02, G:0.08, T:0.14
Consensus pattern (16 bp):
AAAATAAATAAAGATA
Found at i:674876 original size:22 final size:21
Alignment explanation
Indices: 674803--674889 Score: 52
Period size: 22 Copynumber: 4.0 Consensus size: 21
674793 AAATAGAATA
*
674803 ATAAAAGTGAAAATAAATAAAG
1 ATAAAA-TAAAAATAAATAAAG
* *
674825 ATAAAAAAATAAAGAAAAGTAAA-
1 ATAAAATAA-AAA-TAAA-TAAAG
*
674848 ACAAAAATAAAAATAAGATAAAG
1 A-TAAAATAAAAATAA-ATAAAG
* *
674871 ATAAAA-AATATTAAATAAA
1 ATAAAATAAAAATAAATAAA
674890 TCTAATCTAA
Statistics
Matches: 50, Mismatches: 9, Indels: 14
0.68 0.12 0.19
Matches are distributed among these distances:
20 5 0.10
21 7 0.14
22 19 0.38
23 9 0.18
24 10 0.20
ACGTcount: A:0.74, C:0.01, G:0.08, T:0.17
Consensus pattern (21 bp):
ATAAAATAAAAATAAATAAAG
Found at i:674905 original size:4 final size:4
Alignment explanation
Indices: 674898--674928 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
674888 AATCTAATCT
674898 AATA AATAA AATA AATA AATA AATA AATA AA
1 AATA AAT-A AATA AATA AATA AATA AATA AA
674929 ACAAAAACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:674923 original size:12 final size:13
Alignment explanation
Indices: 674812--674928 Score: 59
Period size: 14 Copynumber: 8.9 Consensus size: 13
674802 AATAAAAGTG
674812 AAAATAAATAAAGAT
1 AAAATAAAT-AA-AT
*
674827 AAAA-AAATAAAG
1 AAAATAAATAAAT
674839 AAAAGTAAA-ACAA-
1 AAAA-TAAATA-AAT
*
674852 AAATAAAAATAAGAT
1 AAA-ATAAATAA-AT
674867 AAAGATAAA-AAAT
1 AAA-ATAAATAAAT
*
674880 --ATTAAATAAAT
1 AAAATAAATAAAT
** *
674891 CTAATCTAATAAAT
1 AAAAT-AAATAAAT
674905 AAAATAAATAAAT
1 AAAATAAATAAAT
674918 -AAATAAATAAA
1 AAAATAAATAAA
674929 ACAAAAACAA
Statistics
Matches: 81, Mismatches: 10, Indels: 25
0.70 0.09 0.22
Matches are distributed among these distances:
10 4 0.05
11 5 0.06
12 16 0.20
13 21 0.26
14 24 0.30
15 11 0.14
ACGTcount: A:0.73, C:0.03, G:0.04, T:0.21
Consensus pattern (13 bp):
AAAATAAATAAAT
Found at i:675827 original size:18 final size:20
Alignment explanation
Indices: 675782--675830 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
675772 AAAATCAAAC
675782 GAAAATTAATTAGATAAATCA
1 GAAAATTAATTAGATAAAT-A
675803 GATAAATTAA-TAGATAAAT-
1 GA-AAATTAATTAGATAAATA
*
675822 TAAAATTAA
1 GAAAATTAA
675831 ATAACAGATA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 7 0.27
19 1 0.04
21 11 0.42
22 7 0.27
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.31
Consensus pattern (20 bp):
GAAAATTAATTAGATAAATA
Found at i:675922 original size:3 final size:3
Alignment explanation
Indices: 675914--675948 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
675904 TAAATCCCTA
*
675914 AAT AAT AAT AAT AAT AGT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
675949 AAGAAAAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:676013 original size:51 final size:50
Alignment explanation
Indices: 675923--676063 Score: 117
Period size: 50 Copynumber: 2.7 Consensus size: 50
675913 AAATAATAAT
* * * * *
675923 AATAATAGTAATAATAATAATAATAAAAGAAAAGAAAAAAATATATATATAC-A
1 AATAAAAGTAATAATAAAAAT-A-AAAATAAAA-TAAAAAATATA-AAATACAA
** *
675976 TCTATAAAGTAATAATAAAAATAAAAATAAAAT-AAAAATGTAAAATACAA
1 AATA-AAAGTAATAATAAAAATAAAAATAAAATAAAAAATATAAAATACAA
676026 AATAAAAGTAAATTAA-AAAAATAAAAATAAAAATAAAA
1 AATAAAAGT-AA-TAATAAAAATAAAAAT-AAAATAAAA
676064 TGAAGAGAAA
Statistics
Matches: 72, Mismatches: 10, Indels: 13
0.76 0.11 0.14
Matches are distributed among these distances:
49 10 0.14
50 25 0.35
51 8 0.11
52 11 0.15
53 3 0.04
54 15 0.21
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.23
Consensus pattern (50 bp):
AATAAAAGTAATAATAAAAATAAAAATAAAATAAAAAATATAAAATACAA
Found at i:676020 original size:25 final size:25
Alignment explanation
Indices: 675990--676063 Score: 80
Period size: 25 Copynumber: 2.9 Consensus size: 25
675980 TAAAGTAATA
675990 ATAAAAATAAAAATAAAATAAAAAT
1 ATAAAAATAAAAATAAAATAAAAAT
* *
676015 GT-AAAATACAAAATAAAAGT-AAATT
1 ATAAAAATA-AAAATAAAA-TAAAAAT
*
676040 AAAAAAATAAAAATAAAAATAAAA
1 ATAAAAATAAAAAT-AAAATAAAA
676064 TGAAGAGAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
24 6 0.15
25 20 0.50
26 14 0.35
ACGTcount: A:0.77, C:0.01, G:0.03, T:0.19
Consensus pattern (25 bp):
ATAAAAATAAAAATAAAATAAAAAT
Found at i:676027 original size:7 final size:6
Alignment explanation
Indices: 675989--676063 Score: 82
Period size: 6 Copynumber: 12.2 Consensus size: 6
675979 ATAAAGTAAT
* *
675989 AATAAA AATAAA AAT-AA AATAAA AATGTAA AATACAA AATAAA AGTAAA
1 AATAAA AATAAA AATAAA AATAAA AAT-AAA AATA-AA AATAAA AATAAA
676038 TTAA-AAA AATAAA AATAAA AATAAA A
1 --AATAAA AATAAA AATAAA AATAAA A
676064 TGAAGAGAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
5 7 0.12
6 37 0.63
7 14 0.24
8 1 0.02
ACGTcount: A:0.77, C:0.01, G:0.03, T:0.19
Consensus pattern (6 bp):
AATAAA
Found at i:676030 original size:31 final size:30
Alignment explanation
Indices: 675981--676063 Score: 103
Period size: 31 Copynumber: 2.7 Consensus size: 30
675971 ATACATCTAT
675981 AAAGTAATAATAAAAATAAAAATAAAATAAA
1 AAAGTAA-AATAAAAATAAAAATAAAATAAA
* * *
676012 AATGTAAAATACAAAATAAAAGTAAATTAAA
1 AAAGTAAAATA-AAAATAAAAATAAAATAAA
*
676043 AAAATAAAAATAAAAATAAAA
1 AAAGT-AAAATAAAAATAAAA
676064 TGAAGAGAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
30 4 0.09
31 35 0.78
32 6 0.13
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.19
Consensus pattern (30 bp):
AAAGTAAAATAAAAATAAAAATAAAATAAA
Found at i:676050 original size:13 final size:12
Alignment explanation
Indices: 675989--676063 Score: 82
Period size: 13 Copynumber: 6.1 Consensus size: 12
675979 ATAAAGTAAT
675989 AATAAAAATAAA
1 AATAAAAATAAA
676001 AAT-AAAATAAA
1 AATAAAAATAAA
*
676012 AATGTAAAATACAA
1 AAT-AAAAATA-AA
*
676026 AATAAAAGTAAA
1 AATAAAAATAAA
676038 TTAA-AAAAATAAA
1 --AATAAAAATAAA
676051 AATAAAAATAAA
1 AATAAAAATAAA
676063 A
1 A
676064 TGAAGAGAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 12
0.78 0.04 0.17
Matches are distributed among these distances:
11 13 0.24
12 15 0.28
13 19 0.35
14 7 0.13
ACGTcount: A:0.77, C:0.01, G:0.03, T:0.19
Consensus pattern (12 bp):
AATAAAAATAAA
Found at i:676354 original size:9 final size:8
Alignment explanation
Indices: 676340--676382 Score: 54
Period size: 8 Copynumber: 5.4 Consensus size: 8
676330 AGAGGCAACC
676340 TTTTTTGCT
1 TTTTTTG-T
676349 TTTTTTGT
1 TTTTTTGT
676357 TTTTTT-T
1 TTTTTTGT
676364 TGTTTTTGT
1 T-TTTTTGT
676373 TTTTTT-T
1 TTTTTTGT
676380 TTT
1 TTT
676383 ACCAAAGCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
7 6 0.19
8 17 0.53
9 9 0.28
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.88
Consensus pattern (8 bp):
TTTTTTGT
Found at i:676361 original size:10 final size:10
Alignment explanation
Indices: 676348--676382 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
676338 CCTTTTTTGC
676348 TTTTTTTGTT
1 TTTTTTTGTT
676358 TTTTTTTGTT
1 TTTTTTTGTT
676368 TTTGTTTT-TT
1 TTT-TTTTGTT
676378 TTTTT
1 TTTTT
676383 ACCAAAGCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 2 0.08
10 18 0.75
11 4 0.17
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (10 bp):
TTTTTTTGTT
Found at i:676364 original size:19 final size:18
Alignment explanation
Indices: 676340--676382 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 18
676330 AGAGGCAACC
676340 TTTTTTGCTTTTT-TTGTTT
1 TTTTTTG-TTTTTGTT-TTT
676359 TTTTTTGTTTTTGTTTTT
1 TTTTTTGTTTTTGTTTTT
676377 TTTTTT
1 TTTTTT
676383 ACCAAAGCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 14 0.61
19 9 0.39
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.88
Consensus pattern (18 bp):
TTTTTTGTTTTTGTTTTT
Found at i:676378 original size:16 final size:16
Alignment explanation
Indices: 676350--676380 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
676340 TTTTTTGCTT
676350 TTTTTGTTTTTTTTTG
1 TTTTTGTTTTTTTTTG
676366 TTTTTGTTTTTTTTT
1 TTTTTGTTTTTTTTT
676381 TTACCAAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (16 bp):
TTTTTGTTTTTTTTTG
Found at i:676405 original size:116 final size:115
Alignment explanation
Indices: 676237--676448 Score: 277
Period size: 116 Copynumber: 1.8 Consensus size: 115
676227 CTTTTTACTC
* * * * * *
676237 TTTTTTTTTGTTCTTTTTTTTTTGTTTTTGATCAAAGCTCCCCTAGGTAGAGGCTCAATGACTTT
1 TTTTTTTTTGTTCTTTGTTTTTTGTTTTTGACCAAAGCTCCCCAAAGCAGAGGCTCAACGACTTT
* *
676302 AAGAAACATAAATAAAGCTCCTCTAAATAGAGGCAACCTTTTTTGCTTTTTTTG
66 --GAAAAATAAAT--AGCTCCTCTAAACAGAGGCAACCTTTTTTGCTTTTTTTG
*
676356 TTTTTTTTTGTT-TTTGTTTTTT-TTTTT-ACCAAAGCTCCTCAAAGCAGAGGCTCAACGACTTT
1 TTTTTTTTTGTTCTTTGTTTTTTGTTTTTGACCAAAGCTCCCCAAAGCAGAGGCTCAACGACTTT
*
676418 GAAAAATAAATTGCTCCTCTAAACAGAGGCA
66 GAAAAATAAATAGCTCCTCTAAACAGAGGCA
676449 CCACGACTTT
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
112 18 0.22
114 10 0.12
116 29 0.35
117 5 0.06
118 9 0.11
119 12 0.14
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (115 bp):
TTTTTTTTTGTTCTTTGTTTTTTGTTTTTGACCAAAGCTCCCCAAAGCAGAGGCTCAACGACTTT
GAAAAATAAATAGCTCCTCTAAACAGAGGCAACCTTTTTTGCTTTTTTTG
Found at i:676446 original size:41 final size:41
Alignment explanation
Indices: 676389--676711 Score: 463
Period size: 41 Copynumber: 8.1 Consensus size: 41
676379 TTTTACCAAA
* *
676389 GCTCCTC-AAAGCAGAGGCTCAACGACTTTGAAAAATAAATT
1 GCTCCTCTAAA-CAGAGGCACCACGACTTTGAAAAATAAATT
*
676430 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAAATAAATT
676472 GCTCCTCTAAACAGAGG---CAC--C--T---AAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
*
676503 GCTCCTCTAAACAGAGGCACCACGACTTTG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
676543 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
*
676584 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAGATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
*
676625 GCTCCTCTAAACAGAGGCACCATGACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
* *
676666 GCTCCTCTAAAGAGAGGCATCACGACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
*
676707 ACTCC
1 GCTCC
676712 CTGACAATCA
Statistics
Matches: 257, Mismatches: 13, Indels: 24
0.87 0.04 0.08
Matches are distributed among these distances:
31 25 0.10
34 3 0.01
35 1 0.00
36 1 0.00
37 1 0.00
38 1 0.00
39 3 0.01
40 38 0.15
41 153 0.60
42 31 0.12
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.23
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
Found at i:677997 original size:11 final size:10
Alignment explanation
Indices: 677983--678016 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
677973 CATTTTCTCA
677983 TTTCTTTCTT
1 TTTCTTTCTT
677993 CTTTCTTTCTT
1 -TTTCTTTCTT
*
678004 TTTTTTTCTT
1 TTTCTTTCTT
678014 TTT
1 TTT
678017 TTCATCATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTCTTTCTT
Found at i:681831 original size:12 final size:12
Alignment explanation
Indices: 681814--681838 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
681804 TTAGTTAGAG
681814 AAAAATCAAAAT
1 AAAAATCAAAAT
681826 AAAAATCAAAAT
1 AAAAATCAAAAT
681838 A
1 A
681839 GAAAGGAAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAAATCAAAAT
Found at i:682060 original size:59 final size:58
Alignment explanation
Indices: 681873--682084 Score: 318
Period size: 60 Copynumber: 3.6 Consensus size: 58
681863 TTTTATGTAG
681873 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
* * * *
681931 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAACTCTGA-TTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTTGAAAAT-TTATTTTTAA
* * *
681991 GGAAAATTGATATTTTCAACTTTTCCTCAAAAATCCTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-ATTTTTTTGAAAATTTATTTTTAA
682050 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA
682085 AATTTTTAAG
Statistics
Matches: 137, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
58 36 0.26
59 49 0.36
60 50 0.36
61 2 0.01
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.43
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
Found at i:682090 original size:44 final size:44
Alignment explanation
Indices: 682042--682128 Score: 165
Period size: 44 Copynumber: 2.0 Consensus size: 44
682032 TTGAAAATTT
682042 ATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATAA
1 ATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATAA
*
682086 ATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATA
1 ATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATA
682129 TTTTTTGGAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.40, C:0.15, G:0.07, T:0.38
Consensus pattern (44 bp):
ATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATAA
Found at i:682091 original size:59 final size:59
Alignment explanation
Indices: 681873--682091 Score: 316
Period size: 59 Copynumber: 3.7 Consensus size: 59
681863 TTTTATGTAG
681873 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-ATTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATAATTTTTTTGAAAATTTATTTTTAA
* * * * *
681931 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAACTCTGA-TTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-ATTTTTTTGAAAAT-TTATTTTTAA
* * **
681991 GGAAAATTGATATTTTCAACTTTTCCTCAAAAATCCTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATAATTTTTTTGAAAATTTATTTTTAA
*
682050 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATAAATTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATAATTTTTT
682092 AAGGAAAATT
Statistics
Matches: 141, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
58 35 0.25
59 54 0.38
60 50 0.35
61 2 0.01
ACGTcount: A:0.35, C:0.14, G:0.07, T:0.44
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATAATTTTTTTGAAAATTTATTTTTAA
Found at i:682091 original size:119 final size:118
Alignment explanation
Indices: 681873--682091 Score: 375
Period size: 119 Copynumber: 1.8 Consensus size: 118
681863 TTTTATGTAG
681873 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAAGGAAAAT
* **
681938 TGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAACTCTGATTTCAA
66 TGATACTTTCAACTTTTCCCCAAAAATAAATTTTTTTGAAACTCTGATTTCAA
* * *
681991 GGAAAATTGATATTTTCAACTTTTCCTCAAAAATCCTTTTTTTGAAAATTTATTTTTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-ATTTTTTTGAAAATTTATTTTTAAGGAAAA
682056 TTGATACTTTCAACTTTTCCCCAAAAATAAATTTTT
65 TTGATACTTTCAACTTTTCCCCAAAAATAAATTTTT
682092 AAGGAAAATT
Statistics
Matches: 94, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
118 32 0.34
119 62 0.66
ACGTcount: A:0.35, C:0.14, G:0.07, T:0.44
Consensus pattern (118 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAAGGAAAAT
TGATACTTTCAACTTTTCCCCAAAAATAAATTTTTTTGAAACTCTGATTTCAA
Found at i:682194 original size:103 final size:103
Alignment explanation
Indices: 681989--682185 Score: 308
Period size: 103 Copynumber: 1.9 Consensus size: 103
681979 CTCTGATTTC
* * * *
681989 AAGGAAAATTGATATTTTCAACTTTTCCTCAAAAATCCTTTTTTTGAAAATTTATTTTTAAGGAA
1 AAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCATTTTTTGGAAAATTTATTTTCAAGGAA
682054 AATTGATACTTTCAACTTTTCCCCAAAAATAAATTTTT
66 AATTGATACTTTCAACTTTTCCCCAAAAATAAATTTTT
*
682092 AAGGAAAATTGATACTTTCAACTTTTCC-CTAAAAAT-ATTTTTTGGAAATTTTGATTTTCAAGG
1 AAGGAAAATTGATACTTTCAACTTTTCCTC-AAAAATCATTTTTTGGAAAATTT-ATTTTCAAGG
*
682155 AAAATTGATACTTTCAACTTTTCCTCAAAAA
64 AAAATTGATACTTTCAACTTTTCCCCAAAAA
682186 CTTTTTTTTT
Statistics
Matches: 86, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
102 14 0.16
103 72 0.84
ACGTcount: A:0.37, C:0.14, G:0.08, T:0.41
Consensus pattern (103 bp):
AAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCATTTTTTGGAAAATTTATTTTCAAGGAA
AATTGATACTTTCAACTTTTCCCCAAAAATAAATTTTT
Found at i:682220 original size:162 final size:162
Alignment explanation
Indices: 681923--682244 Score: 506
Period size: 162 Copynumber: 2.0 Consensus size: 162
681913 TTGAAAATTT
*
681923 ATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAACTCTGATTT
1 ATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTTGGAAACTCTGATTT
* *
681988 CAAGGAAAATTGATATTTTCAACTTTTCCTCAAAAATCCTTTTTTTGAAAATTTATTTTTAAGGA
65 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTGAAAATTTATTTTTAAGAA
682053 AAATTGATACTTTCAACTTTTCCCCAAAAATAA
130 AAATTGATACTTTCAACTTTTCCCCAAAAATAA
* *
682086 ATTTTTAAGGAAAATTGATACTTTCAACTTTTCC-CTAAAAATA-TTTTTTGGAAATTTTGATTT
1 ATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTGGAAACTCTGA-TT
* **
682149 TCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CTTTTTTTTTTAAATTTATTTTTTAAG
64 TCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTGAAAATTTA-TTTTTAAG
*
682213 AAAAATTGATACTTTCAACTTTTCCTCAAAAA
128 AAAAATTGATACTTTCAACTTTTCCCCAAAAA
682245 CCCCTTTTTT
Statistics
Matches: 147, Mismatches: 9, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
161 29 0.20
162 77 0.52
163 41 0.28
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.44
Consensus pattern (162 bp):
ATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGGAAACTCTGATTTC
AAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTGAAAATTTATTTTTAAGAAA
AATTGATACTTTCAACTTTTCCCCAAAAATAA
Found at i:682256 original size:221 final size:220
Alignment explanation
Indices: 681873--682304 Score: 683
Period size: 221 Copynumber: 2.0 Consensus size: 220
681863 TTTTATGTAG
* *
681873 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAATTTATTTTCAAGGAAAAT
*
681938 TGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAACTCTGATTTCAAGGAAAATTGATA
66 TGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAACTCTGATTTCAAGAAAAATTGATA
* * * *
682003 TTTTCAACTTTTCCTCAAAAATCCTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTCA
131 CTTTCAACTTTTCCTCAAAAACCCCTTTTTTG-AAATTTATTTTTAAGAAAAATTGATACTTTCA
682068 ACTTTTCCCCAAAAATAAATTTTTAA
195 ACTTTTCCCCAAAAATAAATTTTTAA
* *
682094 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTTGATTTTCAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAATTT-ATTTTCAAGGAAAA
* *
682159 TTGATACTTTCAACTTTTCCTCAAAAACT-TTTTTTTTT-AAA-T-TTATTTTTTAAGAAAAATT
65 TTGATACTTTCAACTTTTCCTCAAAAA-TATTTTTTTTTGAAACTCTGA--TTTCAAGAAAAATT
682220 GATACTTTCAACTTTTCCTCAAAAACCCCTTTTTTGAAATTTATTTTTAAGAAAAATTGATACTT
127 GATACTTTCAACTTTTCCTCAAAAACCCCTTTTTTGAAATTTATTTTTAAGAAAAATTGATACTT
*
682285 TCAACTTTTCCCTAAAAATA
192 TCAACTTTTCCCCAAAAATA
682305 TTTTTTTTGG
Statistics
Matches: 195, Mismatches: 12, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
219 2 0.01
220 48 0.25
221 95 0.49
222 49 0.25
223 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.07, T:0.44
Consensus pattern (220 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAATTTATTTTCAAGGAAAAT
TGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAACTCTGATTTCAAGAAAAATTGATA
CTTTCAACTTTTCCTCAAAAACCCCTTTTTTGAAATTTATTTTTAAGAAAAATTGATACTTTCAA
CTTTTCCCCAAAAATAAATTTTTAA
Found at i:682323 original size:58 final size:58
Alignment explanation
Indices: 682086--682313 Score: 293
Period size: 59 Copynumber: 3.9 Consensus size: 58
682076 CCAAAAATAA
* *
682086 ATTTTTAAGGAAAATTGATACTTTCAACTTTTCC-CTAAAAATA-TTTTTTGGAAATTTT
1 ATTTTTAAGAAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTTGAAA-TTT
* * *
682144 GATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAACT-TTTTTTTTTAAATTT
1 -ATTTTTAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAA-TATTTTTTTTGAAATTT
****
682203 ATTTTTTAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAACCCCTTTTTTGAAATTT
1 A-TTTTTAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAATTT
682262 ATTTTTAAGAAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTG
1 ATTTTTAAGAAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTTG
682314 GTTTTTATTT
Statistics
Matches: 150, Mismatches: 13, Indels: 13
0.85 0.07 0.07
Matches are distributed among these distances:
57 1 0.01
58 46 0.31
59 92 0.61
60 11 0.07
ACGTcount: A:0.34, C:0.13, G:0.07, T:0.46
Consensus pattern (58 bp):
ATTTTTAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAATTT
Found at i:682323 original size:117 final size:118
Alignment explanation
Indices: 682087--682313 Score: 313
Period size: 117 Copynumber: 1.9 Consensus size: 118
682077 CAAAAATAAA
* *
682087 TTTTTAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTTGATTTTCA
1 TTTTTAAGAAAAATTGATACTTTCAACTTTTCCCTAAAAACATTTTTTGGAAATTTTGATTTTCA
* *
682152 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTTTTAAATTTAT
66 AGAAAAATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTTTGAAATTTAT
*
682205 TTTTTAAGAAAAATTGATACTTTCAACTTTT-CCTCAAAAACCCCTTTTTT-GAAA-TTT-ATTT
1 TTTTTAAGAAAAATTGATACTTTCAACTTTTCCCT-AAAAA--CATTTTTTGGAAATTTTGATTT
*
682266 TTAAGAAAAATTGATACTTTCAACTTTTCC-CTAAAAA-TATTTTTTTTG
63 TCAAGAAAAATTGATACTTTCAACTTTTCCTC-AAAAACT-TTTTTTTTG
682314 GTTTTTATTT
Statistics
Matches: 98, Mismatches: 6, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
116 2 0.02
117 48 0.49
118 38 0.39
119 4 0.04
120 6 0.06
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (118 bp):
TTTTTAAGAAAAATTGATACTTTCAACTTTTCCCTAAAAACATTTTTTGGAAATTTTGATTTTCA
AGAAAAATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTTTGAAATTTAT
Found at i:682360 original size:15 final size:14
Alignment explanation
Indices: 682348--682414 Score: 55
Period size: 15 Copynumber: 4.4 Consensus size: 14
682338 AATAAAAGTG
682348 AAAATAAATAAAGAT
1 AAAA-AAATAAAGAT
682363 AAAAAAATAAAGA-
1 AAAAAAATAAAGAT
* *
682376 AAAGTAAAACAAAAAT
1 AAA--AAAATAAAGAT
682392 AAAAATAAGATAAAGAT
1 -AAAA-AA-ATAAAGAT
682409 AAAAAA
1 AAAAAA
682415 TATTAAATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
13 3 0.07
14 9 0.21
15 15 0.36
16 6 0.14
17 9 0.21
ACGTcount: A:0.78, C:0.01, G:0.07, T:0.13
Consensus pattern (14 bp):
AAAAAAATAAAGAT
Found at i:682371 original size:18 final size:17
Alignment explanation
Indices: 682348--682472 Score: 62
Period size: 18 Copynumber: 7.2 Consensus size: 17
682338 AATAAAAGTG
682348 AAAATAAATAAAGATAAA
1 AAAATAAATAAA-ATAAA
*
682366 AAAATAAAGAAAAGTAAA
1 AAAATAAATAAAA-TAAA
*
682384 ACAA-AAATAAAAATAAGA
1 AAAATAAAT-AAAATAA-A
*
682402 TAAAGAT-AA-AAAAT-AT
1 -AAA-ATAAATAAAATAAA
* ** *
682418 TAAATAAATCTAATCTAA
1 AAAATAAATAAAAT-AAA
*
682436 TAAATAAAT-AAATAAA
1 AAAATAAATAAAATAAA
* *
682452 TAAATAAATAAAACAAA
1 AAAATAAATAAAATAAA
682469 AAAA
1 AAAA
682473 AAACCTGGAG
Statistics
Matches: 83, Mismatches: 13, Indels: 23
0.70 0.11 0.19
Matches are distributed among these distances:
14 2 0.02
15 4 0.05
16 14 0.17
17 20 0.24
18 38 0.46
19 2 0.02
20 3 0.04
ACGTcount: A:0.74, C:0.03, G:0.04, T:0.19
Consensus pattern (17 bp):
AAAATAAATAAAATAAA
Found at i:682410 original size:17 final size:16
Alignment explanation
Indices: 682348--682413 Score: 59
Period size: 17 Copynumber: 4.2 Consensus size: 16
682338 AATAAAAGTG
682348 AAAATAAATAAAGAT-
1 AAAATAAATAAAGATA
682363 AAAA-AAATAAAG--A
1 AAAATAAATAAAGATA
* * *
682376 AAAGTAAAACAAAAATA
1 AAAAT-AAATAAAGATA
682393 AAAATAAGATAAAGATA
1 AAAATAA-ATAAAGATA
682410 AAAA
1 AAAA
682414 ATATTAAATA
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
13 3 0.08
14 8 0.21
15 10 0.26
16 2 0.05
17 16 0.41
ACGTcount: A:0.77, C:0.02, G:0.08, T:0.14
Consensus pattern (16 bp):
AAAATAAATAAAGATA
Done.