Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 62 of 117
Found at i:11472533 original size:9 final size:10
Alignment explanation
Indices: 11472508--11472544 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
11472498 TATTATTTAA
*
11472508 TTTTTTCTCT
1 TTTTTTTTCT
11472518 TTTTTTTTCT
1 TTTTTTTTCT
11472528 TTTTTTTTCT
1 TTTTTTTTCT
11472538 TTCTTTT
1 TT-TTTT
11472545 CTAGCAACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
10 21 0.84
11 4 0.16
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:11472730 original size:16 final size:16
Alignment explanation
Indices: 11472706--11472736 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11472696 AGGGGAACAA
11472706 CCTTACAAAAAAAAAC
1 CCTTACAAAAAAAAAC
*
11472722 CCTTGCAAAAAAAAA
1 CCTTACAAAAAAAAA
11472737 ACCAAAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.23, G:0.03, T:0.13
Consensus pattern (16 bp):
CCTTACAAAAAAAAAC
Found at i:11473184 original size:13 final size:11
Alignment explanation
Indices: 11473149--11473190 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
11473139 AAGAATTCTA
*
11473149 AGAGAAGGGAG
1 AGAGAAGGAAG
11473160 AGAGAAGGAAG
1 AGAGAAGGAAG
*
11473171 AGAGAAGGAAA
1 AGAGAAGGAAG
11473182 AGA-AAGGAA
1 AGAGAAGGAA
11473191 AAATGAAAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
10 6 0.21
11 23 0.79
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (11 bp):
AGAGAAGGAAG
Found at i:11473436 original size:11 final size:11
Alignment explanation
Indices: 11473420--11473446 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
11473410 TCACTATAAC
11473420 TTTTTTTAAAA
1 TTTTTTTAAAA
11473431 TTTTTTTAAAA
1 TTTTTTTAAAA
11473442 TTTTT
1 TTTTT
11473447 ATATATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTTTTAAAA
Found at i:11473640 original size:17 final size:16
Alignment explanation
Indices: 11473618--11473656 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
11473608 AATGAACAAG
11473618 AATAAAGAAATATATAA-
1 AATAAAGAAA-A-ATAAT
11473635 AATAAAGAAAAATAAT
1 AATAAAGAAAAATAAT
11473651 AATAAA
1 AATAAA
11473657 TTAATATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.19
16 7 0.33
17 10 0.48
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (16 bp):
AATAAAGAAAAATAAT
Found at i:11474898 original size:16 final size:16
Alignment explanation
Indices: 11474868--11474898 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11474858 AAAAAATAAA
*
11474868 AAAATAAAAATAATTG
1 AAAATAAAAAAAATTG
11474884 AAAATAAAAAAAATT
1 AAAATAAAAAAAATT
11474899 TCACATGTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (16 bp):
AAAATAAAAAAAATTG
Found at i:11479889 original size:21 final size:21
Alignment explanation
Indices: 11479865--11479911 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
11479855 AGAAAAGTTG
11479865 AGAAATCCAAATTG-TGAAGAA
1 AGAAATCCAAATTGATGAA-AA
*
11479886 AGAAA-GCAAATTGATGAAAA
1 AGAAATCCAAATTGATGAAAA
*
11479906 ATAAAT
1 AGAAAT
11479912 AGCAAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.57, C:0.06, G:0.17, T:0.19
Consensus pattern (21 bp):
AGAAATCCAAATTGATGAAAA
Found at i:11480878 original size:43 final size:44
Alignment explanation
Indices: 11480780--11480880 Score: 150
Period size: 45 Copynumber: 2.3 Consensus size: 44
11480770 CTTTCTCTAT
*
11480780 ATTTGCATTTTCTTAGTGGTGACATCCAAATGTTAAAAAAAAATC
1 ATTTGCATTTTCTCAGTGGTGACATCCAAATGTT-AAAAAAAATC
* *
11480825 ATTTGCATTTTCTCAGTGGTGATATCCGAATGTT-AAAAAAATC
1 ATTTGCATTTTCTCAGTGGTGACATCCAAATGTTAAAAAAAATC
*
11480868 ATTTGTATTTTCT
1 ATTTGCATTTTCT
11480881 TGATAATGAT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
43 21 0.40
45 31 0.60
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.41
Consensus pattern (44 bp):
ATTTGCATTTTCTCAGTGGTGACATCCAAATGTTAAAAAAAATC
Found at i:11481007 original size:99 final size:99
Alignment explanation
Indices: 11480820--11481098 Score: 292
Period size: 99 Copynumber: 2.8 Consensus size: 99
11480810 TGTTAAAAAA
* * * ** * * *
11480820 AAATCATTTGCATTTTCTCAGTGGTGATATCCGAATGTTAAAAAAATCATTTGTATTTTCTTGAT
1 AAATCATTTGCATATTCTTAGTGGTGATATCCGAGTGTT-AAAACTTGAATTGCATTTTCTTGAT
* * * * *
11480885 AATGATATTCGAGTCTCTTTCGATGGCAATATCTG
65 AGTGATATTCGAGTTTCCTTCGATGACAATATCCG
* * * *
11480920 AAATTATTTGCCTCTTCTTAGTGGTGATATCCGAGTGTTAAAACTTGAATTGCATTTTCTTGATT
1 AAATCATTTGCATATTCTTAGTGGTGATATCCGAGTGTTAAAACTTGAATTGCATTTTCTTGATA
*
11480985 GTGATATTCGAGTTTCCTTCGATGACGATATCCG
66 GTGATATTCGAGTTTCCTTCGATGACAATATCCG
* * * **
11481019 AAATCATTTGCATATT-TTCAATGGTGATA-CTGGAGTGTTAAAGCTTGAATTGCATTTTCTCAA
1 AAATCATTTGCATATTCTT-AGTGGTGATATC-CGAGTGTTAAAACTTGAATTGCATTTTCTTGA
* *
11481082 TGGTGATATTCAAGTTT
64 TAGTGATATTCGAGTTT
11481099 TCTTTGGCGG
Statistics
Matches: 150, Mismatches: 27, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
98 3 0.02
99 113 0.75
100 34 0.23
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (99 bp):
AAATCATTTGCATATTCTTAGTGGTGATATCCGAGTGTTAAAACTTGAATTGCATTTTCTTGATA
GTGATATTCGAGTTTCCTTCGATGACAATATCCG
Found at i:11481115 original size:99 final size:99
Alignment explanation
Indices: 11480952--11481130 Score: 232
Period size: 99 Copynumber: 1.8 Consensus size: 99
11480942 GGTGATATCC
** * * * *
11480952 GAGTGTTAAAACTTGAATTGCATTTTCTTGATTGTGATATTCGAGTTTCCTTCGATGACGATATC
1 GAGTGTTAAAACTTGAATTGCATTTTCTCAATGGTGATATTCAAGTTTCCTTCGACGACAATATC
*
11481017 CGAAATCATTTGCATATTTTCAATGGTGATACTG
66 CGAAATCATTCGCATATTTTCAATGGTGATACTG
* * * * **
11481051 GAGTGTTAAAGCTTGAATTGCATTTTCTCAATGGTGATATTCAAGTTTTCTTTGGCGGTAATATC
1 GAGTGTTAAAACTTGAATTGCATTTTCTCAATGGTGATATTCAAGTTTCCTTCGACGACAATATC
*
11481116 CGAAGTCATTCGCAT
66 CGAAATCATTCGCAT
11481131 TTTCTCGATC
Statistics
Matches: 66, Mismatches: 14, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
99 66 1.00
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.40
Consensus pattern (99 bp):
GAGTGTTAAAACTTGAATTGCATTTTCTCAATGGTGATATTCAAGTTTCCTTCGACGACAATATC
CGAAATCATTCGCATATTTTCAATGGTGATACTG
Found at i:11481414 original size:10 final size:10
Alignment explanation
Indices: 11481399--11481432 Score: 54
Period size: 9 Copynumber: 3.6 Consensus size: 10
11481389 TGTATTTATT
11481399 TTTTTTTCTC
1 TTTTTTTCTC
11481409 TTTTTTTCT-
1 TTTTTTTCTC
11481418 TTTTTTT-TC
1 TTTTTTTCTC
11481427 TTTTTT
1 TTTTTT
11481433 CTTTTCTAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 1 0.04
9 13 0.57
10 9 0.39
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (10 bp):
TTTTTTTCTC
Found at i:11481422 original size:18 final size:17
Alignment explanation
Indices: 11481399--11481437 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
11481389 TGTATTTATT
11481399 TTTTTTTCTCTTTTTTTC
1 TTTTTTTCTC-TTTTTTC
*
11481417 TTTTTTTTTCTTTTTTC
1 TTTTTTTCTCTTTTTTC
11481434 TTTT
1 TTTT
11481438 CTAGCAACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (17 bp):
TTTTTTTCTCTTTTTTC
Found at i:11481640 original size:22 final size:21
Alignment explanation
Indices: 11481613--11481672 Score: 59
Period size: 23 Copynumber: 2.7 Consensus size: 21
11481603 CAAAAAAAAA
11481613 TAAAAAAAAAAAGAAAACCCTTGC
1 TAAAAAAAAAAA-AAAA--CTTGC
11481637 -AAAACAAATAAAAAAAACTTGC
1 TAAAA-AAA-AAAAAAAACTTGC
*
11481659 TAAAAAACAAAAAA
1 TAAAAAAAAAAAAA
11481673 GCTACCAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
21 6 0.19
22 7 0.22
23 8 0.25
24 7 0.22
25 4 0.12
ACGTcount: A:0.70, C:0.13, G:0.05, T:0.12
Consensus pattern (21 bp):
TAAAAAAAAAAAAAAACTTGC
Found at i:11482212 original size:22 final size:22
Alignment explanation
Indices: 11482187--11482235 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
11482177 TATAGGTCTA
11482187 AGCTGGTTGATCAAGCCATTTG
1 AGCTGGTTGATCAAGCCATTTG
11482209 AGCTGGTTGATCAAGCCATTTG
1 AGCTGGTTGATCAAGCCATTTG
11482231 AGCTG
1 AGCTG
11482236 CCTTTGAACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (22 bp):
AGCTGGTTGATCAAGCCATTTG
Found at i:11482315 original size:20 final size:19
Alignment explanation
Indices: 11482277--11482316 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
11482267 GAATTTTAGG
*
11482277 TATTTTTACTATAACTTTT
1 TATTTTTACTATAAATTTT
*
11482296 TATTTTTTCTATTAAATTTT
1 TATTTTTACTA-TAAATTTT
11482316 T
1 T
11482317 TTATATATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (19 bp):
TATTTTTACTATAAATTTT
Found at i:11482350 original size:23 final size:21
Alignment explanation
Indices: 11482277--11482371 Score: 61
Period size: 23 Copynumber: 4.3 Consensus size: 21
11482267 GAATTTTAGG
* *
11482277 TATTTTTACTATAACTT-TTTA
1 TATTTTT-CTATTATTTATTTA
*
11482298 T-TTTTTCTATTAAATTTTTTTA
1 TATTTTTCTATT--ATTTATTTA
*
11482320 TATATTTCTATTATTTAATTTA
1 TATTTTTCTATTATTT-ATTTA
*
11482342 TGATTTTTCTCTTATTTTTATTT-
1 T-ATTTTTCTATTA--TTTATTTA
11482365 TATTTTT
1 TATTTTT
11482372 GTATAAACTT
Statistics
Matches: 60, Mismatches: 6, Indels: 15
0.74 0.07 0.19
Matches are distributed among these distances:
19 4 0.07
20 5 0.08
21 8 0.13
22 16 0.27
23 20 0.33
24 4 0.07
25 3 0.05
ACGTcount: A:0.23, C:0.06, G:0.01, T:0.69
Consensus pattern (21 bp):
TATTTTTCTATTATTTATTTA
Found at i:11484120 original size:41 final size:41
Alignment explanation
Indices: 11484038--11484125 Score: 106
Period size: 41 Copynumber: 2.1 Consensus size: 41
11484028 TTATACTTTT
** ** *
11484038 TATTATGATAATAGATGATGTTTACTTTTTTAAAGATCATC
1 TATTATGATAATAGATGACATTTACTTTTCAAAAGACCATC
*
11484079 TATTATGATAATAGATGGCATTTACTTTCTCAAAAG-CCATC
1 TATTATGATAATAGATGACATTTACTTT-TCAAAAGACCATC
11484120 TATTAT
1 TATTAT
11484126 ATTATAAGTT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
41 35 0.88
42 5 0.12
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.43
Consensus pattern (41 bp):
TATTATGATAATAGATGACATTTACTTTTCAAAAGACCATC
Found at i:11488248 original size:18 final size:18
Alignment explanation
Indices: 11488212--11488262 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 18
11488202 ATTAACTTAT
* * *
11488212 TTTTATAATAAATATAAA
1 TTTTAAAATAATTAAAAA
11488230 TTTTAAAATAATTAAAAA
1 TTTTAAAATAATTAAAAA
**
11488248 TAATAAAAT-ATTAAA
1 TTTTAAAATAATTAAA
11488263 TAATATAATA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
17 6 0.21
18 22 0.79
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
TTTTAAAATAATTAAAAA
Found at i:11488265 original size:15 final size:15
Alignment explanation
Indices: 11488245--11488274 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
11488235 AAATAATTAA
11488245 AAATAATAAAATATT
1 AAATAATAAAATATT
*
11488260 AAATAATATAATATT
1 AAATAATAAAATATT
11488275 TATTTTTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AAATAATAAAATATT
Found at i:11488267 original size:18 final size:18
Alignment explanation
Indices: 11488233--11488267 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
11488223 ATATAAATTT
11488233 TAAAATAATTAAAAATAA
1 TAAAATAATTAAAAATAA
11488251 TAAAAT-ATTAAATAATA
1 TAAAATAATTAAA-AATA
11488268 TAATATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATAATTAAAAATAA
Found at i:11493173 original size:21 final size:21
Alignment explanation
Indices: 11493149--11493193 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
11493139 CTTTGTCACT
11493149 TTGAACATCTAG-ATCACCAAC
1 TTGAACAT-TAGTATCACCAAC
**
11493170 TTGAGTATTAGTATCACCAAC
1 TTGAACATTAGTATCACCAAC
11493191 TTG
1 TTG
11493194 CGTAATATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.31
Consensus pattern (21 bp):
TTGAACATTAGTATCACCAAC
Found at i:11496087 original size:188 final size:187
Alignment explanation
Indices: 11495768--11496134 Score: 468
Period size: 188 Copynumber: 2.0 Consensus size: 187
11495758 ATTGAAGGCA
* *
11495768 TTTTTTAGAACAAATGCCTTTAATAATTTCCTTTAAAAATTATTTGAGATTAGTAAAGGTGTGTT
1 TTTTTTAGAACAAACGCCTTCAATAATTTCCTTTAAAAATTATTTGAGATTAGTAAAGGTGTGTT
* ** * *
11495833 CCAGTAAAAAATACCTTTAATATTCCACTACTAACATTTTAAGACTGTTAGTGAAAGCACTTATT
66 CCAGTAAAAAACACCTCCAATATTCCACTACTAACATTTTAAAAATGTTAGTGAAAGCACTTATT
* * *
11495898 CCAAAAAAATGCATTCACTAATTCTTTCTAATTTTTGAAGGAAATTATTCAAGGTGT
131 CCAAAAAAATGCATTCACTAATTCGTCCTAATTTTTGAAGAAAATTATTCAAGGTGT
* ** * * *
11495955 TTTTTTAGAACAAACGGCTTCAATAATTTTTTTTAAAAATT-TGTTTAGGATTATTAAAGGTGTT
1 TTTTTTAGAACAAACGCCTTCAATAATTTCCTTTAAAAATTAT-TTGA-GATTAGTAAAGGTGTG
* * ** * *
11496019 TTTCAGTGAAAAACACCTCCAATATTCCGTTACTAACA-TTTAAAAATGGTTAGTGAAGGCATTT
64 TTCCAGTAAAAAACACCTCCAATATTCCACTACTAACATTTTAAAAAT-GTTAGTGAAAGCACTT
* * *
11496083 ATTCCAGAAAAATGCCTTTACTAATTCGTCCTAATTTTTGAAGAAAATTATT
128 ATTCCAAAAAAATGCATTCACTAATTCGTCCTAATTTTTGAAGAAAATTATT
11496135 GAAAGCATTT
Statistics
Matches: 152, Mismatches: 25, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
186 1 0.01
187 46 0.30
188 105 0.69
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (187 bp):
TTTTTTAGAACAAACGCCTTCAATAATTTCCTTTAAAAATTATTTGAGATTAGTAAAGGTGTGTT
CCAGTAAAAAACACCTCCAATATTCCACTACTAACATTTTAAAAATGTTAGTGAAAGCACTTATT
CCAAAAAAATGCATTCACTAATTCGTCCTAATTTTTGAAGAAAATTATTCAAGGTGT
Found at i:11496407 original size:238 final size:239
Alignment explanation
Indices: 11495940--11496409 Score: 608
Period size: 238 Copynumber: 2.0 Consensus size: 239
11495930 TTTTGAAGGA
** ** * *
11495940 AATTATTCAAGGTGTTTTTTTAGAACAAACGGCTTCAATAATTTTTTTTAAAAATTTGTTTAGGA
1 AATTATTCAAGGCATTTTTTTAGAACAAACACCTTCAATAATTTTTTTTAAAAATTTATTTACGA
* * *** *
11496005 TTATTAAAGGTGTTTTTCAGTGAAAAACACCTCCAATATTCCGTTACTAACATTTAAAAATGGTT
66 TTATTAAAGGCGTCTTTCAGTGAAAAACACCTCCAATATTCAACTACTAAAATTTAAAAATGGTT
* * *
11496070 AGTGAAGGCATTTATTCCAGAAAAATGCCTTTACTAATTCGTCCTAATTTTTGAAGAAAATTATT
131 AGTGAAGGCATTTATTCCAGAAAAATACCTTCACTAATTCATCCTAATTTTTGAAGAAAATTATT
*
11496135 GAAAGCATTTTATTCTAAATACACCTTTAATAATTTTTGTATAG
196 GAAAGCATTTTATTCTAAATACACCTTCAATAATTTTTGTATAG
*
11496179 AATTATTGAAGGCATTTTTTTAGAACAAACACCTTCAATAATTTCTTTTT-AAAATTTATTTACG
1 AATTATTCAAGGCATTTTTTTAGAACAAACACCTTCAATAATTT-TTTTTAAAAATTTATTTACG
* ** *
11496243 ATTATTAAAGGCGTCTTTCAGTG-AAAATACCTTTAATATTCAACTACTAAAATTGT-AAGATGG
65 ATTATTAAAGGCGTCTTTCAGTGAAAAACACCTCCAATATTCAACTACTAAAATT-TAAAAATGG
* * *
11496306 TTAGTGAAGGCGTTTATTCGAGAAAAATACCTTCACTAATTCATTCTAATTTTTGAA-AAAATTT
129 TTAGTGAAGGCATTTATTCCAGAAAAATACCTTCACTAATTCATCCTAATTTTTGAAGAAAA-TT
* * ** *
11496370 ATTGAAGGCATTTT-TTGTTGTATACGCCTTCAATAATTTT
193 ATTGAAAGCATTTTATT-CTAAATACACCTTCAATAATTTT
11496410 ATTTTTAAAA
Statistics
Matches: 198, Mismatches: 29, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
237 6 0.03
238 114 0.58
239 73 0.37
240 5 0.03
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (239 bp):
AATTATTCAAGGCATTTTTTTAGAACAAACACCTTCAATAATTTTTTTTAAAAATTTATTTACGA
TTATTAAAGGCGTCTTTCAGTGAAAAACACCTCCAATATTCAACTACTAAAATTTAAAAATGGTT
AGTGAAGGCATTTATTCCAGAAAAATACCTTCACTAATTCATCCTAATTTTTGAAGAAAATTATT
GAAAGCATTTTATTCTAAATACACCTTCAATAATTTTTGTATAG
Found at i:11496480 original size:187 final size:187
Alignment explanation
Indices: 11496181--11496596 Score: 586
Period size: 187 Copynumber: 2.2 Consensus size: 187
11496171 TTGTATAGAA
*** * * * *
11496181 TTATTGAAGGCATTTTTTTAGAACAAACACCTTCAATAA-TTTCTTTTTAAAATTTATTTACGAT
1 TTATTGAAGGCATTTTTTGCTAA-ATACGCCTTCAATAATTTTATTTTTAAAATTTATATACGAT
* *
11496245 TATTAAAGGCGTCTTTCAGTGAAAATACCTTTAATATTCAACTACTAAAATTGTAAGATGGTTAG
65 TATTAAAGGCATCTTTCAGTGAAAATACCTTCAATATTCAACTACTAAAATTGTAAGATGGTTAG
* * *
11496310 TGAAGGCGTTTATTCGAGAAAAATACCTTCACTAATTCATTCTAATTTTTGAAAAAAT
130 TAAAGGCGTTTATTCGAGAAAAATACATTCACTAATTCATTCTAAGTTTTGAAAAAAT
* ** *
11496368 TTATTGAAGGCATTTTTTGTTGTATACGCCTTCAATAATTTTATTTTTAAAA-TTATATAGGATT
1 TTATTGAAGGCATTTTTTGCTAAATACGCCTTCAATAATTTTATTTTTAAAATTTATATACGATT
*
11496432 ATTAAAGGCATCTTAT-AGTGAAAAATACCTTCAATATTCCACTACTAAAATTGTAAGATGGTTA
66 ATTAAAGGCATCTT-TCAGTG-AAAATACCTTCAATATTCAACTACTAAAATTGTAAGATGGTTA
* * * **
11496496 GTAAAGTCGTTTATTCTAGAAAAATGCATTCACTAATTTGTTCTAAGTTTTGAAAAAAT
129 GTAAAGGCGTTTATTCGAGAAAAATACATTCACTAATTCATTCTAAGTTTTGAAAAAAT
11496555 TTATTGAAGGCATTTTTTGCTAAATACGCCTTCAATAATTTT
1 TTATTGAAGGCATTTTTTGCTAAATACGCCTTCAATAATTTT
11496597 TGTATAGAAT
Statistics
Matches: 202, Mismatches: 24, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
186 40 0.20
187 162 0.80
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (187 bp):
TTATTGAAGGCATTTTTTGCTAAATACGCCTTCAATAATTTTATTTTTAAAATTTATATACGATT
ATTAAAGGCATCTTTCAGTGAAAATACCTTCAATATTCAACTACTAAAATTGTAAGATGGTTAGT
AAAGGCGTTTATTCGAGAAAAATACATTCACTAATTCATTCTAAGTTTTGAAAAAAT
Found at i:11496865 original size:178 final size:179
Alignment explanation
Indices: 11496583--11496939 Score: 500
Period size: 178 Copynumber: 2.0 Consensus size: 179
11496573 GCTAAATACG
* *
11496583 CCTTCAATAATTTTTGTATAGAATTATTGAAGGTATTTTTTTTTAGAATAAATACCTTCAATAAT
1 CCTTCAATAATTTTTGTACAGAATTATTGAAGGTA-TTTTTTTTAGAACAAATACCTTCAATAAT
* * * *
11496648 TTTCTTTTAAAAATTGTTTGGGATTATTGAAGACGTCTTCTAGTGAAAAACAGATTCAATATTCC
65 TTTCTTTTAAAAATTGTTTGGGATTACTAAAGACGTCTTCCAGTGAAAAACACATTCAATATTCC
* *
11496713 ACTACTAAAATTATAAGGCAGTTAGTGAAGGCATTTATTCCAAAAAAATA
130 ACTACTAAAATTATAAGACAGTTAGTAAAGGCATTTATTCCAAAAAAATA
* *
11496763 CCTTCAATAATTTTTGTACAGAATTATTGAAGGTA-TTTTTTTAGAACAAATGCTTTCAATAATT
1 CCTTCAATAATTTTTGTACAGAATTATTGAAGGTATTTTTTTTAGAACAAATACCTTCAATAATT
** * * * * *
11496827 TTCTTTTAAATTTTGTTTGTGATTACTAAAGGCGTCTTCCAGTGAAAAATACCTTTAATATTCCA
66 TTCTTTTAAAAATTGTTTGGGATTACTAAAGACGTCTTCCAGTGAAAAACACATTCAATATTCCA
* ** * *
11496892 CTACTAAAATTGTAAGATGGTTAGTAAAGGCGTTTATTCCAGAAAAAT
131 CTACTAAAATTATAAGACAGTTAGTAAAGGCATTTATTCCAAAAAAAT
11496940 GCATTCACTA
Statistics
Matches: 155, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
178 121 0.78
180 34 0.22
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.39
Consensus pattern (179 bp):
CCTTCAATAATTTTTGTACAGAATTATTGAAGGTATTTTTTTTAGAACAAATACCTTCAATAATT
TTCTTTTAAAAATTGTTTGGGATTACTAAAGACGTCTTCCAGTGAAAAACACATTCAATATTCCA
CTACTAAAATTATAAGACAGTTAGTAAAGGCATTTATTCCAAAAAAATA
Found at i:11497825 original size:28 final size:28
Alignment explanation
Indices: 11497761--11497834 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
11497751 TTAAATATTG
* *
11497761 TGGTTTGCTAAATGGTATTGTGTGATAT
1 TGGTTTGCTGAATGGTATTGTATGATAT
**
11497789 TATTTTGCTGAATGGTATTGTATGATAT
1 TGGTTTGCTGAATGGTATTGTATGATAT
* *
11497817 TGGTGTGCTGAATCGTAT
1 TGGTTTGCTGAATGGTAT
11497835 ACTGAATAGT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.22, C:0.05, G:0.27, T:0.46
Consensus pattern (28 bp):
TGGTTTGCTGAATGGTATTGTATGATAT
Found at i:11499577 original size:21 final size:21
Alignment explanation
Indices: 11499533--11499577 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
11499523 ATGAGTTTAA
* *
11499533 TATTAATTTGTTTATTATATT
1 TATTAATTTGTTTATAATACT
11499554 TATTAATTTGGTTT-TAATACT
1 TATTAATTT-GTTTATAATACT
11499575 TAT
1 TAT
11499578 ATTTCATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.62
Consensus pattern (21 bp):
TATTAATTTGTTTATAATACT
Found at i:11501491 original size:125 final size:127
Alignment explanation
Indices: 11501268--11501558 Score: 339
Period size: 125 Copynumber: 2.3 Consensus size: 127
11501258 GTTTTTCACT
* * * *
11501268 AAAAAACACATTCAATAATCCCACCTAAAAATTTATTG-TGTGACATATTAAAGGCGTTTTGAGC
1 AAAAAACACCTTCAATAATCCTAACTAAAAATTTATTGATGTGACATATTAAAGGCGTTTCGAGC
* * *
11501332 CAAAAACGCCTTTAAAAATCCGTTCCAACTTTTTTGTATGGATTATTAAAGGCATTTTT-G-
66 CAAAAACACCTTCAAAAATCCGTTCCAACTTTTTTCTATGGATTATTAAAGGCATTTTTAGC
* *
11501392 ACAAAAACACCTTCAATAATCCTAACTAAAAATTTATTGAT-TGGA-TTATTGAAGGCGCTTTCG
1 A-AAAAACACCTTCAATAATCCTAACTAAAAATTTATTGATGT-GACATATTAAAGGCG-TTTCG
* *
11501455 -GCCAAAAACACCTTCAAGAATCCGTTCCATA-TTTTTTCTATGGATTATTAAGGGCATTTTTAG
63 AGCCAAAAACACCTTCAAAAATCCGTTCCA-ACTTTTTTCTATGGATTATTAAAGGCATTTTTAG
11501518 C
127 C
* *
11501519 AAGAAAACGCCTTGAATAATCCCTAAC--AAAATATTATTGA
1 AA-AAAACACCTTCAATAAT-CCTAACTAAAAAT-TTATTGA
11501559 AGGCATTTTT
Statistics
Matches: 144, Mismatches: 13, Indels: 17
0.83 0.07 0.10
Matches are distributed among these distances:
124 1 0.01
125 99 0.69
126 15 0.10
127 23 0.16
128 6 0.04
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.33
Consensus pattern (127 bp):
AAAAAACACCTTCAATAATCCTAACTAAAAATTTATTGATGTGACATATTAAAGGCGTTTCGAGC
CAAAAACACCTTCAAAAATCCGTTCCAACTTTTTTCTATGGATTATTAAAGGCATTTTTAGC
Found at i:11501683 original size:179 final size:178
Alignment explanation
Indices: 11501373--11501694 Score: 466
Period size: 179 Copynumber: 1.8 Consensus size: 178
11501363 TTTTGTATGG
* * * *
11501373 ATTATTAAAGGCATTTTTGACAAAAACACCTTCAATAATCCTAACTAAAAATTTATTGATTGGAT
1 ATTATTAAAGGCATTTTTAACAAAAACACCTTCAATAATCCCAACTAAAAATTTATTGATTGAAA
* * * * *
11501438 TATTGAAGGCGCTTTCGGCCAAAAACACCTTCAAGAATCCGTTCCATATTTTTTCTATGGATTAT
66 TATTGAAAGCACTTTCGACCAAAAACACCTTCAAGAATCCGTTCCATATTTTTCCTATGAATTAT
11501503 TAAGGGCATTTTTAGCAAGAAAACGCCTTGAATAATCCCTAACAAAAT
131 TAAGGGCATTTTTAGCAAGAAAACGCCTTGAATAATCCCTAACAAAAT
* * *
11501551 ATTATTGAAGGCATTTTTAACAAAAATCACCTTTAATAATCCCACCTAAAAATTTATTG-TGTGA
1 ATTATTAAAGGCATTTTTAACAAAAA-CACCTTCAATAATCCCAACTAAAAATTTATTGAT-TGA
* * * *
11501615 AATATTGAAAGCATTTTCGACCAAAGACACCTTCAAGAATCTGTTTCATATTTTTCCTATGAATT
64 AATATTGAAAGCACTTTCGACCAAAAACACCTTCAAGAATCCGTTCCATATTTTTCCTATGAATT
*
11501680 ATTAAGGGCGTTTTT
129 ATTAAGGGCATTTTT
11501695 CTGTCGAAAA
Statistics
Matches: 125, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
178 25 0.20
179 100 0.80
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (178 bp):
ATTATTAAAGGCATTTTTAACAAAAACACCTTCAATAATCCCAACTAAAAATTTATTGATTGAAA
TATTGAAAGCACTTTCGACCAAAAACACCTTCAAGAATCCGTTCCATATTTTTCCTATGAATTAT
TAAGGGCATTTTTAGCAAGAAAACGCCTTGAATAATCCCTAACAAAAT
Found at i:11501752 original size:304 final size:304
Alignment explanation
Indices: 11501191--11501752 Score: 695
Period size: 304 Copynumber: 1.8 Consensus size: 304
11501181 TTTTTTGATG
* * *
11501191 GGATTACTAAAGGCATTTTTAGCAAGAAAATGCCTTGAATAATCCTTAACAAAATGTTATTAAAG
1 GGATTACTAAAGGCATTTTTAGCAAGAAAACGCCTTGAATAATCCCTAACAAAATATTATTAAAG
** * *
11501256 GTGTTTTTCACTAAAAAACACATTCAATAATCCCACCTAAAAATTTATTGTGTGACATATTAAAG
66 GCATTTTTAACTAAAAAACACATTCAATAATCCCACCTAAAAATTTATTGTGTGAAATATTAAAG
* * * ** *
11501321 GCGTTTTGAGCCAAAAACGCCTTTAAAAATCCGTTCCAACTTTTTTGTATGGATTATTAAAGGCA
131 GCATTTTGAGCCAAAAACACCTTCAAAAATCCGTTCCAACTTTTTCCTATGAATTATTAAAGGCA
* * * *
11501386 TTTTTGACAAAAACACCTTCAATAATCCTAACTAAAAATTTATTGATTGGATTATTGAAGGCGCT
196 TTTTTGACAAAAACACCTTCAATAATCCT-ACTAAAAATTTATTAAATCGATTAGTGAAGGCGCT
11501451 TTCGGCCAAAAACACCTTCAAGAATCCGTTCCATATTTTTTCTAT
260 TTCGGCCAAAAACACCTTCAAGAATCCGTTCCATATTTTTTCTAT
* * *
11501496 GGATTATTAAGGGCATTTTTAGCAAGAAAACGCCTTGAATAATCCCTAACAAAATATTATTGAAG
1 GGATTACTAAAGGCATTTTTAGCAAGAAAACGCCTTGAATAATCCCTAACAAAATATTATTAAAG
* * *
11501561 GCATTTTTAAC-AAAAATCACCTTTAATAATCCCACCTAAAAATTTATTGTGTGAAATATTGAAA
66 GCATTTTTAACTAAAAAACACATTCAATAATCCCACCTAAAAATTTATTGTGTGAAATATT-AAA
* * * * *
11501625 -GCATTTTCGA-CCAAAGACACCTTCAAGAATCTGTTTCATA-TTTTTCCTATGAATTATTAAGG
130 GGCATTTT-GAGCCAAAAACACCTTCAAAAATCCGTTCCA-ACTTTTTCCTATGAATTATTAAAG
* * * * * * * *
11501687 GCGTTTTTCTGTCGAAAACGCCTTCAAT-ATTCT-CTCCAAAATTTTTTAAATCGATTGGTGAAG
193 GC-ATTTT-TGACAAAAACACCTTCAATAATCCTACT-AAAAATTTATTAAATCGATTAGTGAAG
11501750 GCG
255 GCG
11501753 TTTTTACCCA
Statistics
Matches: 215, Mismatches: 36, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
303 2 0.01
304 116 0.54
305 81 0.38
306 16 0.07
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.34
Consensus pattern (304 bp):
GGATTACTAAAGGCATTTTTAGCAAGAAAACGCCTTGAATAATCCCTAACAAAATATTATTAAAG
GCATTTTTAACTAAAAAACACATTCAATAATCCCACCTAAAAATTTATTGTGTGAAATATTAAAG
GCATTTTGAGCCAAAAACACCTTCAAAAATCCGTTCCAACTTTTTCCTATGAATTATTAAAGGCA
TTTTTGACAAAAACACCTTCAATAATCCTACTAAAAATTTATTAAATCGATTAGTGAAGGCGCTT
TCGGCCAAAAACACCTTCAAGAATCCGTTCCATATTTTTTCTAT
Found at i:11507632 original size:28 final size:26
Alignment explanation
Indices: 11507587--11507657 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 26
11507577 TTTCATTTTC
*
11507587 TTTTAAATAT-TTATATTTTATTTTATA
1 TTTTAAATATATTA-ATTTTATTGTA-A
*
11507614 TTTTAACATATATTAATTTTCTTGTAA
1 TTTTAA-ATATATTAATTTTATTGTAA
*
11507641 TCTTAAAATATATTAAT
1 T-TTTAAATATATTAAT
11507658 GTTTGTGTTC
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
27 18 0.47
28 17 0.45
29 3 0.08
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.58
Consensus pattern (26 bp):
TTTTAAATATATTAATTTTATTGTAA
Found at i:11507760 original size:18 final size:19
Alignment explanation
Indices: 11507732--11507767 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
11507722 TATAATATTA
*
11507732 AAAATAAAATTATTTCATC
1 AAAATAAAATTAATTCATC
11507751 AAAA-AAAATTAATTCAT
1 AAAATAAAATTAATTCAT
11507768 GCGTCAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAATAAAATTAATTCATC
Found at i:11509993 original size:36 final size:37
Alignment explanation
Indices: 11509885--11509999 Score: 121
Period size: 36 Copynumber: 3.2 Consensus size: 37
11509875 CATAAAAATA
* *
11509885 CTAAACCAAAACCCTAAAAA-ACC-CAAACAC-TAACC
1 CTAAATCAAAACCCTAAAAAGACCTTAAA-ACTTAACC
* * * *
11509920 TTAAATCAAAACCCTAAAAATACCTTAAACCTAAACC
1 CTAAATCAAAACCCTAAAAAGACCTTAAAACTTAACC
* *
11509957 CTAAATCGAAA-CCTTAAAAGACCTTAAAACTTAACC
1 CTAAATCAAAACCCTAAAAAGACCTTAAAACTTAACC
11509993 CTAAATC
1 CTAAATC
11510000 TTAACCGTAA
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
35 18 0.27
36 32 0.48
37 16 0.24
ACGTcount: A:0.50, C:0.30, G:0.02, T:0.18
Consensus pattern (37 bp):
CTAAATCAAAACCCTAAAAAGACCTTAAAACTTAACC
Found at i:11510024 original size:19 final size:19
Alignment explanation
Indices: 11509988--11510024 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
11509978 CCTTAAAACT
**
11509988 TAACCCTAAATCTTAACCG
1 TAACCCTAAATCAAAACCG
11510007 TAACCCTAAATCAAAACC
1 TAACCCTAAATCAAAACC
11510025 CTAAAATACC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.32, G:0.03, T:0.22
Consensus pattern (19 bp):
TAACCCTAAATCAAAACCG
Found at i:11510093 original size:17 final size:17
Alignment explanation
Indices: 11510056--11510095 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
11510046 CTCTAGACTG
* *
11510056 AAACCTTAAACTACTTT
1 AAACCTTAAACTACCTA
*
11510073 AAACCTTAAATTACCTA
1 AAACCTTAAACTACCTA
11510090 AAACCT
1 AAACCT
11510096 ACTCGAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (17 bp):
AAACCTTAAACTACCTA
Found at i:11510221 original size:19 final size:19
Alignment explanation
Indices: 11510164--11510223 Score: 68
Period size: 19 Copynumber: 3.2 Consensus size: 19
11510154 GAAAAGCCTA
*
11510164 AAACCTAACCCT-AACTCT
1 AAACCAAACCCTAAACTCT
* * *
11510182 AAACCAAATCTTAAGCTCT
1 AAACCAAACCCTAAACTCT
*
11510201 AAACCAAACCCTAAACCCT
1 AAACCAAACCCTAAACTCT
11510220 AAAC
1 AAAC
11510224 TTAACCCCTA
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
18 9 0.27
19 24 0.73
ACGTcount: A:0.45, C:0.35, G:0.02, T:0.18
Consensus pattern (19 bp):
AAACCAAACCCTAAACTCT
Found at i:11515248 original size:13 final size:13
Alignment explanation
Indices: 11515226--11515262 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
11515216 TTTTATTTTT
11515226 CATTTT-TAAATA
1 CATTTTATAAATA
11515238 CATTTTATAAAATA
1 CATTTTAT-AAATA
11515252 CATTTTATAAA
1 CATTTTATAAA
11515263 AAATAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 6 0.26
13 4 0.17
14 13 0.57
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
CATTTTATAAATA
Found at i:11515267 original size:16 final size:14
Alignment explanation
Indices: 11515233--11515263 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
11515223 TTTCATTTTT
11515233 AAATACATTTTATA
1 AAATACATTTTATA
11515247 AAATACATTTTATA
1 AAATACATTTTATA
11515261 AAA
1 AAA
11515264 AATAAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (14 bp):
AAATACATTTTATA
Found at i:11515277 original size:6 final size:7
Alignment explanation
Indices: 11515258--11515282 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
11515248 AATACATTTT
11515258 ATAAAAA
1 ATAAAAA
11515265 ATAAAAA
1 ATAAAAA
11515272 ATAAAAA
1 ATAAAAA
11515279 ATAA
1 ATAA
11515283 TTTAAATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (7 bp):
ATAAAAA
Found at i:11516969 original size:24 final size:24
Alignment explanation
Indices: 11516940--11516993 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
11516930 AAAAACATAG
11516940 ATTTTGAAAT-AAAACTAAAATAAC
1 ATTTTG-AATGAAAACTAAAATAAC
* *
11516964 ATTTTG-ATGGAAGCTAAAATAAC
1 ATTTTGAATGAAAACTAAAATAAC
11516987 ATTTTGA
1 ATTTTGA
11516994 GGAAAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
22 2 0.08
23 18 0.69
24 6 0.23
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.33
Consensus pattern (24 bp):
ATTTTGAATGAAAACTAAAATAAC
Found at i:11516983 original size:23 final size:22
Alignment explanation
Indices: 11516954--11516997 Score: 79
Period size: 23 Copynumber: 2.0 Consensus size: 22
11516944 TGAAATAAAA
11516954 CTAAAATAACATTTTGATGGAAG
1 CTAAAATAACATTTTGA-GGAAG
11516977 CTAAAATAACATTTTGAGGAA
1 CTAAAATAACATTTTGAGGAA
11516998 AATAATTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 4 0.19
23 17 0.81
ACGTcount: A:0.45, C:0.09, G:0.16, T:0.30
Consensus pattern (22 bp):
CTAAAATAACATTTTGAGGAAG
Found at i:11521373 original size:17 final size:17
Alignment explanation
Indices: 11521347--11521379 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
11521337 TTTTAGTGGT
11521347 GAAAAAAAAAT-AAAAG
1 GAAAAAAAAATGAAAAG
11521363 GAAAGAAAAAATGAAAA
1 GAAA-AAAAAATGAAAA
11521380 TAATGAAGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 7 0.47
18 4 0.27
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (17 bp):
GAAAAAAAAATGAAAAG
Found at i:11524998 original size:18 final size:18
Alignment explanation
Indices: 11524977--11525011 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
11524967 AAAAAAAGAA
*
11524977 AAATATTGAAAAAAATCC
1 AAATATTAAAAAAAATCC
*
11524995 AAATTTTAAAAAAAATC
1 AAATATTAAAAAAAATC
11525012 GAAAAAGAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.09, G:0.03, T:0.26
Consensus pattern (18 bp):
AAATATTAAAAAAAATCC
Found at i:11525896 original size:37 final size:38
Alignment explanation
Indices: 11525793--11525902 Score: 116
Period size: 37 Copynumber: 2.9 Consensus size: 38
11525783 GCACATTCGA
* *
11525793 ATAATATATGCATTTAATTTTATACATATCTTAATAAG
1 ATAATATATGCATTTCATTTTATACACATCTTAATAAG
* * * *
11525831 ATAATATATGCA-TTCTATCTCATTCACATCTTTAT-AG
1 ATAATATATGCATTTC-ATTTTATACACATCTTAATAAG
* * *
11525868 ATAATACATGTATTTCATTTTATGCACATCTTAAT
1 ATAATATATGCATTTCATTTTATACACATCTTAAT
11525903 TGATAGAACA
Statistics
Matches: 58, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
37 29 0.50
38 29 0.50
ACGTcount: A:0.36, C:0.14, G:0.05, T:0.45
Consensus pattern (38 bp):
ATAATATATGCATTTCATTTTATACACATCTTAATAAG
Found at i:11529925 original size:11 final size:11
Alignment explanation
Indices: 11529906--11529967 Score: 72
Period size: 11 Copynumber: 5.5 Consensus size: 11
11529896 GAAAGTGAAA
* *
11529906 GAAAGAAAAAT
1 GAAAAAAAAAG
11529917 GAAAAAAAAAG
1 GAAAAAAAAAG
*
11529928 GAAGGAAAAAAG
1 GAA-AAAAAAAG
11529940 GAAAAAAAGAA-
1 GAAAAAAA-AAG
11529951 GAAAAAAAAAG
1 GAAAAAAAAAG
11529962 GAAAAA
1 GAAAAA
11529968 GAAATGAAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
10 2 0.05
11 30 0.68
12 12 0.27
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (11 bp):
GAAAAAAAAAG
Found at i:11529944 original size:22 final size:22
Alignment explanation
Indices: 11529911--11529967 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 22
11529901 TGAAAGAAAG
*
11529911 AAAAATGAAAAAAA-AAGGAAGGA
1 AAAAAGGAAAAAAAGAA-GAA-GA
*
11529934 AAAAAGGAAAAAAAGAAGAAAA
1 AAAAAGGAAAAAAAGAAGAAGA
11529956 AAAAAGGAAAAA
1 AAAAAGGAAAAA
11529968 GAAATGAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
22 13 0.42
23 16 0.52
24 2 0.06
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (22 bp):
AAAAAGGAAAAAAAGAAGAAGA
Found at i:11529967 original size:12 final size:12
Alignment explanation
Indices: 11529918--11529967 Score: 59
Period size: 12 Copynumber: 4.3 Consensus size: 12
11529908 AAGAAAAATG
11529918 AAAAAAAAAGGA
1 AAAAAAAAAGGA
**
11529930 AGGAAAAAAGGA
1 AAAAAAAAAGGA
*
11529942 AAAAAAGAA-G-
1 AAAAAAAAAGGA
11529952 AAAAAAAAAGGA
1 AAAAAAAAAGGA
11529964 AAAA
1 AAAA
11529968 GAAATGAAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
10 8 0.27
11 2 0.07
12 20 0.67
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAGGA
Found at i:11529976 original size:11 final size:10
Alignment explanation
Indices: 11529893--11529976 Score: 55
Period size: 11 Copynumber: 8.1 Consensus size: 10
11529883 TGAAAGGGGG
**
11529893 AAAGAAAGTG
1 AAAGAAAGAA
11529903 AAAGAAAGAA
1 AAAGAAAGAA
*
11529913 AAATGAAAAAA
1 AAA-GAAAGAA
*
11529924 AAAGGAAGGAAA
1 AAA-GAAAG-AA
*
11529936 AAAGGAA-AA
1 AAAGAAAGAA
11529945 AAAG-AAGAA
1 AAAGAAAGAA
*
11529954 AAAAAAAGGAA
1 AAAGAAA-GAA
11529965 AAAGAAATGAA
1 AAAGAAA-GAA
11529976 A
1 A
11529977 TAAATGATTG
Statistics
Matches: 58, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
8 2 0.03
9 11 0.19
10 13 0.22
11 27 0.47
12 5 0.09
ACGTcount: A:0.75, C:0.00, G:0.21, T:0.04
Consensus pattern (10 bp):
AAAGAAAGAA
Found at i:11531283 original size:3 final size:3
Alignment explanation
Indices: 11531275--11531310 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
11531265 CTAAGCTAAA
11531275 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
11531311 TGTTATAATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:11532482 original size:20 final size:20
Alignment explanation
Indices: 11532445--11532483 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
11532435 TATTTAAGAG
* * *
11532445 AAAAATTTTTAAATAAATTA
1 AAAAAATTTCAAAAAAATTA
11532465 AAAAAATTTCAAAAAAATT
1 AAAAAATTTCAAAAAAATT
11532484 TTTAAACATC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAAAATTTCAAAAAAATTA
Found at i:11532522 original size:11 final size:11
Alignment explanation
Indices: 11532506--11532530 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
11532496 ACCAAATTTT
11532506 AAAAATTATAA
1 AAAAATTATAA
11532517 AAAAATTATAA
1 AAAAATTATAA
11532528 AAA
1 AAA
11532531 TTTCTAAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAAATTATAA
Found at i:11532615 original size:30 final size:30
Alignment explanation
Indices: 11532558--11532613 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
11532548 AATTTCAAAA
* *
11532558 AAAATTATAAAATTTTCTTAACATTTTCCT
1 AAAATTATAAAAATTTCTTAAAATTTTCCT
*
11532588 AAAATTCTAAAAATTTC-TAAAATTTT
1 AAAATTATAAAAATTTCTTAAAATTTT
11532614 TCAACACTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
29 8 0.35
30 15 0.65
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.45
Consensus pattern (30 bp):
AAAATTATAAAAATTTCTTAAAATTTTCCT
Found at i:11532806 original size:10 final size:10
Alignment explanation
Indices: 11532756--11532816 Score: 50
Period size: 10 Copynumber: 6.0 Consensus size: 10
11532746 AAATATTTTT
*
11532756 AAAATTTTACA
1 AAAATTCTA-A
* *
11532767 AAAAATCTCA
1 AAAATTCTAA
* *
11532777 AAATTTCTTA
1 AAAATTCTAA
*
11532787 AAAATGCTAA
1 AAAATTCTAA
*
11532797 ACAATTCTAA
1 AAAATTCTAA
11532807 AAAATTCTAA
1 AAAATTCTAA
11532817 TTTTTTTAAA
Statistics
Matches: 38, Mismatches: 12, Indels: 1
0.75 0.24 0.02
Matches are distributed among these distances:
10 32 0.84
11 6 0.16
ACGTcount: A:0.54, C:0.13, G:0.02, T:0.31
Consensus pattern (10 bp):
AAAATTCTAA
Found at i:11532835 original size:10 final size:10
Alignment explanation
Indices: 11532822--11532866 Score: 51
Period size: 10 Copynumber: 4.8 Consensus size: 10
11532812 TCTAATTTTT
*
11532822 TTAAAAGTTA
1 TTAAAAATTA
11532832 TTAAAAATT-
1 TTAAAAATTA
*
11532841 TTAAAACTTA
1 TTAAAAATTA
11532851 TTAAAAA--A
1 TTAAAAATTA
11532859 TTAAAAAT
1 TTAAAAAT
11532867 ATGAAGTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
8 8 0.27
9 8 0.27
10 14 0.47
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (10 bp):
TTAAAAATTA
Found at i:11532842 original size:19 final size:19
Alignment explanation
Indices: 11532820--11532857 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
11532810 ATTCTAATTT
*
11532820 TTTTAAAAGTTATTAAAAA
1 TTTTAAAACTTATTAAAAA
11532839 TTTTAAAACTTATTAAAAA
1 TTTTAAAACTTATTAAAAA
11532858 ATTAAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (19 bp):
TTTTAAAACTTATTAAAAA
Found at i:11532865 original size:19 final size:19
Alignment explanation
Indices: 11532824--11532865 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
11532814 TAATTTTTTT
* * *
11532824 AAAAGTTATTAAAAATTTT
1 AAAACTTATTAAAAAATTA
11532843 AAAACTTATTAAAAAATTA
1 AAAACTTATTAAAAAATTA
11532862 AAAA
1 AAAA
11532866 TATGAAGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (19 bp):
AAAACTTATTAAAAAATTA
Found at i:11532946 original size:18 final size:19
Alignment explanation
Indices: 11532908--11532946 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
11532898 CATAATTTGG
*
11532908 AAAATTTTTAAAATTCTAA
1 AAAATTTTTAAAAGTCTAA
11532927 AAAATTTTTAAAAGTC-AA
1 AAAATTTTTAAAAGTCTAA
11532945 AA
1 AA
11532947 CATTCAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (19 bp):
AAAATTTTTAAAAGTCTAA
Found at i:11533315 original size:15 final size:15
Alignment explanation
Indices: 11533295--11533337 Score: 68
Period size: 16 Copynumber: 2.8 Consensus size: 15
11533285 AAAAATTTGA
11533295 TTTTTGATTTTAGTT
1 TTTTTGATTTTAGTT
11533310 TTTTTGACTTTTAGTT
1 TTTTTGA-TTTTAGTT
*
11533326 TTTTTAATTTTA
1 TTTTTGATTTTA
11533338 ACAAATTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 12 0.46
16 14 0.54
ACGTcount: A:0.16, C:0.02, G:0.09, T:0.72
Consensus pattern (15 bp):
TTTTTGATTTTAGTT
Found at i:11533407 original size:19 final size:18
Alignment explanation
Indices: 11533367--11533403 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
11533357 TAAAACCGTC
11533367 ATTTTTTTATTCTTTTAA
1 ATTTTTTTATTCTTTTAA
11533385 ATTTTTTTGATT-TTTTAA
1 ATTTTTTT-ATTCTTTTAA
11533403 A
1 A
11533404 ATTTGGAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.70
Consensus pattern (18 bp):
ATTTTTTTATTCTTTTAA
Found at i:11533483 original size:9 final size:9
Alignment explanation
Indices: 11533444--11533495 Score: 52
Period size: 10 Copynumber: 5.6 Consensus size: 9
11533434 TCCTTAATTC
11533444 TTTTT-GAA
1 TTTTTAGAA
*
11533452 TTTCTTAAAA
1 TTT-TTAGAA
11533462 TTTTCTAGAA
1 TTTT-TAGAA
*
11533472 TTTTTGGAA
1 TTTTTAGAA
11533481 TTTCTTAGAA
1 TTT-TTAGAA
11533491 TTTTT
1 TTTTT
11533496 TTATATTTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
8 3 0.08
9 12 0.33
10 21 0.58
ACGTcount: A:0.27, C:0.06, G:0.10, T:0.58
Consensus pattern (9 bp):
TTTTTAGAA
Found at i:11533665 original size:21 final size:20
Alignment explanation
Indices: 11533597--11533649 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
11533587 TTTCTAAAAT
*
11533597 TTTTTG-AAATTATTTTAGAA
1 TTTTTGAAAATT-TGTTAGAA
11533617 TTTTTGAAAATTTGTTAGAA
1 TTTTTGAAAATTTGTTAGAA
11533637 TTTTTGAAAATTT
1 TTTTTGAAAATTT
11533650 TCATAATATT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 26 0.84
21 5 0.16
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (20 bp):
TTTTTGAAAATTTGTTAGAA
Found at i:11533704 original size:28 final size:28
Alignment explanation
Indices: 11533672--11533740 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
11533662 TGAATTCTTA
11533672 ATTTTTTTTGAATAATTTAAACTTTT-AG
1 ATTTTTTTTGAA-AATTTAAACTTTTGAG
* * *
11533700 TTTTTTTATTTAAAATTTGAACTTTTGAG
1 ATTTTTT-TTGAAAATTTAAACTTTTGAG
11533729 A-TTTTTTTGAAA
1 ATTTTTTTTGAAA
11533741 TTTTTAATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
27 5 0.15
28 23 0.68
29 6 0.18
ACGTcount: A:0.30, C:0.03, G:0.09, T:0.58
Consensus pattern (28 bp):
ATTTTTTTTGAAAATTTAAACTTTTGAG
Found at i:11533737 original size:19 final size:18
Alignment explanation
Indices: 11533715--11533754 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
11533705 TTATTTAAAA
*
11533715 TTTGAACTTTTGAGATTTT
1 TTTGAAATTTTGA-ATTTT
*
11533734 TTTGAAATTTTTAATTTT
1 TTTGAAATTTTGAATTTT
11533752 TTT
1 TTT
11533755 TAGAATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.23, C:0.03, G:0.10, T:0.65
Consensus pattern (18 bp):
TTTGAAATTTTGAATTTT
Found at i:11533754 original size:29 final size:28
Alignment explanation
Indices: 11533722--11533802 Score: 90
Period size: 29 Copynumber: 2.9 Consensus size: 28
11533712 AAATTTGAAC
* *
11533722 TTTTGAGATTTTTTTGAAATTTTTAATTT
1 TTTTTAGAATTTTTTGAAATTTTTAA-TT
**
11533751 TTTTTAGAATTTTTAAAAATTTTTAATT
1 TTTTTAGAATTTTTTGAAATTTTTAATT
* * *
11533779 TGTTTAGAATGTTTTGTAATTTTT
1 TTTTTAGAATTTTTTGAAATTTTT
11533803 CTTTTTAAGA
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
28 21 0.49
29 22 0.51
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (28 bp):
TTTTTAGAATTTTTTGAAATTTTTAATT
Found at i:11533755 original size:19 final size:19
Alignment explanation
Indices: 11533729--11533766 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
11533719 AACTTTTGAG
*
11533729 ATTTTTTTGA-AATTTTTA
1 ATTTTTTTTAGAATTTTTA
11533747 ATTTTTTTTAGAATTTTTA
1 ATTTTTTTTAGAATTTTTA
11533766 A
1 A
11533767 AAATTTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (19 bp):
ATTTTTTTTAGAATTTTTA
Found at i:11535122 original size:234 final size:229
Alignment explanation
Indices: 11534058--11536082 Score: 943
Period size: 233 Copynumber: 8.8 Consensus size: 229
11534048 TTATTTGACA
* * *
11534058 TAAAATAGGTAAAAAGTG-TAGTAACATACTAAGAAAAAATTATGATAATTCTAAA-AGTAATGA
1 TAAAATA-GTAAAAAATGTTA-TAACATACTAA-AAAAAGTTATGACAATTCTAAACA-TAATGA
* * * * * ** * *
11534121 AAAATATCGAACAATTA-TAAAAAAATATTA--GTAACATAAATTATTATGTTGGCAATTTAAAT
62 AAAGTA-AGAACAA-CAGTAAAAATATATTATTGTAAC-TAAATAATTATGTTAACAATGTAAAA
* * * * * * *
11534183 TTTTAACTAATTATTA-TTT-TAACTTTATAAAGAATATAACTAAAATTTGAAAAACAAA-TAGG
124 TTTTAATTAATTATTATTTTATAAATATAT-AAGAAAATAGCTAAAA-TT-AAAAAAAAATTA-A
* * * * ** * * *
11534245 TATTGTAAAAAAGTGAAAAAAAATGTAGAATTAGTATAATTTG-G
185 TAATGTAAACAAGTGAGAAGAAACATAAAATTAATATCATTTGAG
* * * * *
11534289 CATAAAATAAGTAAAAAATGTCATAACATACTAAGAAAAA--AATGACATTTCTAAATATAATTA
1 --TAAAAT-AGTAAAAAATGTTATAACATACTAA-AAAAAGTTATGACAATTCTAAACATAATGA
* * * * * * ** * *
11534352 AAGGTATGAATAATCA-TAAAAAATAAATTATTGTAATGTAAATAATTAAGTTGTCAAAGTAAGA
62 AAAGTAAGAACAA-CAGT-AAAAATATATTATTGTAA-CTAAATAATTATGTTAACAATGTAAAA
* * * * **
11534416 TTTTAATTATTTATT-TTTTGTAAATATATAAGAAAATACCTAAAAATTAAAAAACAATTGGTAA
124 TTTTAATTAATTATTATTTTATAAATATATAAGAAAATAGCT-AAAATTAAAAAAAAATTAATAA
* *
11534480 TATAAACAAGTGAGAAGAAACATAAAATTAATATCATTTAGTG
188 TGTAAACAAGTGAGAAGAAACATAAAATTAATATCATTT-GAG
* * * * * *
11534523 TAAAATAGGTATAAATTGTCATAATATGCTAAAAAAAGTTATGACAATTTTAAACATAATGAAAA
1 TAAAATA-GTAAAAAATGTTATAACATACTAAAAAAAGTTATGACAATTCTAAACATAATGAAAA
* * * * * * *
11534588 TTAAGAATAACCA-TAATAATATATTATTATAATATAAATAATTATATTGGTAAC-ATG--ATAT
65 GTAAGAACAA-CAGTAAAAATATATTATTGTAA-CTAAATAA-T-TA-TGTTAACAATGTAAAAT
* * *
11534649 TTTAATTAATTATTATTTTATAAATATCTAAGAAGAATAGTTAAAAATTAAAAAATTAATTAATA
125 TTTAATTAATTATTATTTTATAAATATATAAGAA-AATAGCT-AAAATTAAAAAA-AAATTAATA
* * *
11534714 ATGTAAACAAGTGAGAA-TAA-ATACAAATTAGTACCATTTTG-G
187 ATGTAAACAAGTGAGAAGAAACATA-AAATTAATATCA-TTTGAG
* * * * * * *
11534756 TAAAATAGATAAAAAATATTGTAATATATTAAGAAAGAGTTATGACATTTCTAAACATAATAAAA
1 TAAAATAG-TAAAAAATGTTATAACATACTAA-AAAAAGTTATGACAATTCTAAACATAATGAAA
** * * **
11534821 AGTTAA-AACAATTGTAAAAA-ATATTATTGTAA-AAGTAATAATTATGTTGACAATACAAAATT
64 AG-TAAGAACAACAGTAAAAATATATTATTGTAACTA--AATAATTATGTTAACAATGTAAAATT
* * * * *
11534883 TTAATTATTTATTATTCCTGTAAATAGAAAAGAAAATTAGCTAAAATTAAAAAATAAATTAATAA
126 TTAATTAATTATTATT-TTATAAATATATAAGAAAA-TAGCTAAAATTAAAAAA-AAATTAATAA
* * * ** *
11534948 CGTAAATAAGTGAGAAGCAACATAAAATTAGCATCATTTGAAA
188 TGTAAACAAGTGAGAAGAAACATAAAATTAATATCATTTG-AG
* * * * * * * * *
11534991 TAAAATGAGTTAATAGTGCTGTAACACACTAAGAAAAGTTATAATAATTCTAAACATAATGAAAA
1 TAAAAT-AGTAAAAAATGTTATAACATACTAAAAAAAGTTATGACAATTCTAAACATAATGAAAA
*
11535056 GTAAGAACAACAGTAAAAATATATTATTGTAACTAAATAATTATGATAACAATGTAAAATTTTAA
65 GTAAGAACAACAGTAAAAATATATTATTGTAACTAAATAATTATGTTAACAATGTAAAATTTTAA
* *
11535121 TTAATTATTGTTATTAT--ATATATAAGGAAAATAGCTATAAATT--AAAAAAATTAACAATGTA
130 TTAATTATTATT-TTATAAATATATAA-GAAAATAGCTA-AAATTAAAAAAAAATTAATAATGTA
**
11535182 AA-ATAGTGAGAAGAAATGTAAAATTAATATCATTTGACG
192 AACA-AGTGAGAAGAAACATAAAATTAATATCATTTGA-G
* * *
11535221 TAAAATGAGTAAAAAATGTTATAACAAACTAAAAAAAAGTTATGATAATTCTAAACATAATAGAT
1 TAAAAT-AGTAAAAAATGTTATAACATACT-AAAAAAAGTTATGACAATTCTAAACATAAT-GAA
* ** * * * * *
11535286 TA-TAAGAACAATTGTAAGAAA-ATATTATTATAACGTAAATATTTAAGTAAACAATGTAAAACT
63 AAGTAAGAACAACAGTAA-AAATATATTATTGTAAC-TAAATAATTATGTTAACAATGTAAAATT
* *
11535349 TTAATTAATTATTGTTTTTATAAATATATAAGAAAAATAGCTAATAATTAAAAAGCAAA-TAAGT
126 TTAATTAATTATT-ATTTTATAAATATATAAG-AAAATAGCTAA-AATTAAAAA-AAAATTAA-T
* * **
11535413 AA-CTAAACAAAT-ATGAA-AAACATAAAATTTGTATCATTT--G
186 AATGTAAACAAGTGA-GAAGAAACATAAAATTAATATCATTTGAG
* * *
11535453 -------G-----CA---TA-AA-ATA--AGAAAAAGTTATAACAATTCTAAA-AGTAATGAAAA
1 TAAAATAGTAAAAAATGTTATAACATACTAAAAAAAGTTATGACAATTCTAAACA-TAATGAAAA
** * * *
11535498 GTAAGAACAATTGTAAGAAAT-TATTATTGTAACATAAATAATTAAATAGATAAC-A--TCAACT
65 GTAAGAACAACAGTAA-AAATATATTATTGTAAC-TAAATAATT--AT-GTTAACAATGTAAAAT
* * ** * * *
11535559 TTTAATTGATTATTGTTTTTATAAATATATAAGTAAAATAAATAAATTTAAAAATAAA-TAGGTA
125 TTTAATTAATTATT-ATTTTATAAATATATAAG-AAAATAGCTAAAATTAAAAAAAAATTA-ATA
** *
11535623 ATGTTAAA-AAG-GA-AAG---CATAAAATTTCTATAATTTGTCA-
187 ATG-TAAACAAGTGAGAAGAAACATAAAATTAATATCATTTG--AG
* * * * * * * ** *
11535662 TAGAATGGGTAAAAAGTGTCATAACACACTATAAGAAAGTTATAACAATTCTAAATGTAATTAAA
1 TAAAAT-AGTAAAAAATGTTATAACATACTA-AAAAAAGTTATGACAATTCTAAACATAATGAAA
* * * * * * *
11535727 AGTAAAAACAACTA-TAAGAA-ATATTAATATAATGTAAATAATTAAGTAGGTAGC-A--TAAAA
64 AGTAAGAACAAC-AGTAAAAATATATTATTGTAA-CTAAATAATT-A-T-GTTAACAATGTAAAA
* * * * *
11535787 TTTTAATTAATTATTGTTTTGTTAAA-ATATAAGCAAAATAGATTAAAA-AAAAAAAACAAATAG
124 TTTTAATTAATTATTATTTT-ATAAATATATAAG-AAAATAG-CTAAAATTAAAAAAA-AATTA-
** * *
11535850 ATAACATAAACAAGTGAGAA-AAATTATAAAATT--TATCATTTGACA
184 ATAATGTAAACAAGTGAGAAGAAA-CATAAAATTAATATCATTTGA-G
* ** * * * * *
11535895 TAAAATGAGTAAGAAGTATCATATCACATACTAACAAAAAGCTATAACAATTTTAAATATAATGG
1 TAAAAT-AGTAA-AA-AATGTTATAACATACTAA-AAAAAGTTATGACAATTCTAAACATAAT-G
** * * * * * * **
11535960 ACTA-TAAAAACAATC-GTAAAAAAATATAATTGTAACGTAAATAATTAAGTGAGCAACATAAAA
61 AAAAGTAAGAACAA-CAGTAAAAATATATTATTGTAAC-TAAATAATTATGTTAACAATGTAAAA
* * *
11536023 TTTTAATTAATTATTATTTTTTGTAAATATATAAGAAAAATAGATAAAATTTAAAAAAAA
124 TTTTAATTAATTATTA--TTTTATAAATATATAAG-AAAATAGCTAAAATTAAAAAAAAA
11536083 CAAATAGGTA
Statistics
Matches: 1397, Mismatches: 264, Indels: 258
0.73 0.14 0.13
Matches are distributed among these distances:
206 17 0.01
208 2 0.00
209 8 0.01
210 15 0.01
211 111 0.08
213 2 0.00
214 6 0.00
215 2 0.00
216 2 0.00
217 1 0.00
219 1 0.00
224 1 0.00
225 1 0.00
226 2 0.00
227 2 0.00
228 25 0.02
229 61 0.04
230 128 0.09
231 102 0.07
232 169 0.12
233 277 0.20
234 219 0.16
235 143 0.10
236 59 0.04
237 17 0.01
238 24 0.02
ACGTcount: A:0.52, C:0.06, G:0.10, T:0.32
Consensus pattern (229 bp):
TAAAATAGTAAAAAATGTTATAACATACTAAAAAAAGTTATGACAATTCTAAACATAATGAAAAG
TAAGAACAACAGTAAAAATATATTATTGTAACTAAATAATTATGTTAACAATGTAAAATTTTAAT
TAATTATTATTTTATAAATATATAAGAAAATAGCTAAAATTAAAAAAAAATTAATAATGTAAACA
AGTGAGAAGAAACATAAAATTAATATCATTTGAG
Found at i:11535817 original size:441 final size:436
Alignment explanation
Indices: 11535020--11535900 Score: 943
Period size: 441 Copynumber: 2.0 Consensus size: 436
11535010 TGTAACACAC
*
11535020 TAAGAAAAGTTATAATAATTCTAAACATAATGAAAAGTAAGAACAACAGTAAAAATATATTATTG
1 TAAGAAAAGTTATAACAATTCTAAACATAATGAAAAGTAAGAACAACAGTAAAAATATATTATTG
11535085 TAACTAAATAATTATGATAACAATGTAAAATTTTAATTAATTATTGTTATTATATATATAAGGAA
66 TAACTAAATAATTATGATAACAA-GTAAAATTTTAATTAATTATTGTTATTATATATATAAGGAA
* * *
11535150 AATAGCTATAAATTAAAAAAATTAACAATGTAAAATAGTGAGAAGAAATGTAAAATTAATATCAT
130 AATA-CAATAAATTAAAAAAAATAACAATGTAAAATAGTGAGAAGAAA-GTAAAATTAATATAAT
* * * *
11535215 TTGACGTAAAATGAGTAAAAAATGTTATAACAAACTAAAAAAAAGTTATGATAATTCTAAACATA
193 TTGACATAAAATGAGTAAAAAATGTCATAACAAACTAAAAAAAAGTTATAACAATTCTAAACATA
* * * * * * **
11535280 ATAGATTATAAGAACAATTGTAAGAAAATATTATTATAACGTAAATATTTAAGTAAACAATGTAA
258 ATAGATAATAAAAACAACTATAAGAAAATATTAATATAACGTAAATAATTAAGTAAACAACATAA
** *
11535345 AACTTTAATTAATTATTGTTTTTATAAATATATAAGAAAAATAG-CTAATAATTAAAAAGCAAAT
323 AACTTTAATTAATTATTGTTTTT-TAAA-ATATAAGAAAAATAGACTAA-AAAAAAAAAACAAAT
*
11535409 A-AGTAAC-TAAACAAAT-ATGAAAAA-CATAAAATTTGTATCATTTGGCATAAAA
385 AGA-TAACATAAACAAATGA-GAAAAATCATAAAA-TT-TATCATTTGACATAAAA
**
11535461 TAAGAAAAAGTTATAACAATTCTAAA-AGTAATGAAAAGTAAGAACAATTGTAAGAAAT-TATTA
1 TAAG-AAAAGTTATAACAATTCTAAACA-TAATGAAAAGTAAGAACAACAGTAA-AAATATATTA
* * * *
11535524 TTGTAACATAAATAATTAAATAGATAAC-A-TCAACTTTTAATTGATTATTGTTTTTATAAATAT
63 TTGTAAC-TAAATAATT--AT-GATAACAAGTAAAATTTTAATTAATTATTGTTATTAT--ATAT
* ** *
11535587 ATAAGTAAAATA-AATAAATTTAAAAATAAATAGGTAATGTTAAAA-AG-GA-AAG-CA-TAAAA
122 ATAAGGAAAATACAATAAA-TTAAAAA-AAATA-ACAATG-TAAAATAGTGAGAAGAAAGTAAAA
** * * * * * * *
11535646 TTTCTATAATTTGTCATAGAATGGGTAAAAAGTGTCATAACACACTATAAGAAAGTTATAACAAT
183 TTAATATAATTTGACATAAAATGAGTAAAAAATGTCATAACAAACTAAAAAAAAGTTATAACAAT
** *
11535711 TCTAAATGTAATTA-A-AAGTAAAAACAACTATAAG-AAATATTAATATAATGTAAATAATTAAG
248 TCTAAACATAA-TAGATAA-TAAAAACAACTATAAGAAAATATTAATATAACGTAAATAATTAAG
*** * * * *
11535773 TAGGTAGCATAAAATTTTAATTAATTATTGTTTTGTTAAAATATAAGCAAAATAGATTAAAAAAA
311 TAAACAACATAAAACTTTAATTAATTATTGTTTT-TTAAAATATAAGAAAAATAGACTAAAAAAA
* *
11535838 AAAAACAAATAGATAACATAAACAAGTGAGAAAAATTATAAAATTTATCATTTGACATAAAA
375 AAAAACAAATAGATAACATAAACAAATGAGAAAAATCATAAAATTTATCATTTGACATAAAA
11535900 T
1 T
11535901 GAGTAAGAAG
Statistics
Matches: 368, Mismatches: 51, Indels: 44
0.79 0.11 0.10
Matches are distributed among these distances:
439 48 0.13
440 77 0.21
441 92 0.25
442 57 0.15
443 43 0.12
444 10 0.03
445 24 0.07
446 12 0.03
447 5 0.01
ACGTcount: A:0.53, C:0.06, G:0.10, T:0.32
Consensus pattern (436 bp):
TAAGAAAAGTTATAACAATTCTAAACATAATGAAAAGTAAGAACAACAGTAAAAATATATTATTG
TAACTAAATAATTATGATAACAAGTAAAATTTTAATTAATTATTGTTATTATATATATAAGGAAA
ATACAATAAATTAAAAAAAATAACAATGTAAAATAGTGAGAAGAAAGTAAAATTAATATAATTTG
ACATAAAATGAGTAAAAAATGTCATAACAAACTAAAAAAAAGTTATAACAATTCTAAACATAATA
GATAATAAAAACAACTATAAGAAAATATTAATATAACGTAAATAATTAAGTAAACAACATAAAAC
TTTAATTAATTATTGTTTTTTAAAATATAAGAAAAATAGACTAAAAAAAAAAAACAAATAGATAA
CATAAACAAATGAGAAAAATCATAAAATTTATCATTTGACATAAAA
Found at i:11536029 original size:236 final size:239
Alignment explanation
Indices: 11535519--11536283 Score: 641
Period size: 242 Copynumber: 3.2 Consensus size: 239
11535509 TGTAAGAAAT
* * * * * * *
11535519 TATTATTGTAACATAAATAATTAAAT-AGATAACATCAACTTTTAATTGATTATTGTTTT-TATA
1 TATTAATGTAACGTAAATAATTAAGTGAG-TAACATAAAATTTTAATTAATTATTGTTTTGTGTA
* * ** * * **
11535582 AATATATAAGTAAAATAAAT-AAAT-TTAAAAATAAATAGGTAATGTTAAA-AAG---G--AAAG
65 AATATATAAGAAAAATAGATAAAATAAAAAAAACAAATAGATAA-CATAAACAAGTAAGAAAAAG
* * * * * * * * *
11535639 CATAAAATTTCTATAATTTGTCATAGAATGGGTAA-AAAGTGTCATAACACACTATAAGAA-AGT
129 TATAAAA-TTCTATAATTTGACATAAAATAGGTAAGAAA-TATCATAACACATTAAAAAAATAGC
* * *
11535702 TATAACAATTCTAAA-TGTAAT-TAA-AAGTAAAAACAA-C-TATAAGAAA
192 TATAACAATTCTAAACT-TAATGGAACTA-TAAAAACAATCATA-AAAAAA
* * *
11535748 TATTAATATAATGTAAATAATTAAGT-AGGTAGCATAAAATTTTAATTAATTATTGTTTTGT-TA
1 TATTAATGTAACGTAAATAATTAAGTGA-GTAACATAAAATTTTAATTAATTATTGTTTTGTGTA
* * *
11535811 AA-ATATAAGCAAAATAGATTAAAA-AAAAAAAACAAATAGATAACATAAACAAGTGAGAAAAAT
65 AATATATAAGAAAAATAGA-TAAAATAAAAAAAACAAATAGATAACATAAACAAGTAAGAAAAAG
* * * *
11535874 TATAAAATT-TATCATTTGACATAAAAT-GAGTAAGAAGTATCATATCACATACTAACAAAA-AG
129 TATAAAATTCTATAATTTGACATAAAATAG-GTAAGAAATATCATAACACAT--TAAAAAAATAG
* *
11535936 CTATAACAATTTTAAA-TATAATGG-ACTATAAAAACAATCGTAAAAAAA
191 CTATAACAATTCTAAACT-TAATGGAACTATAAAAACAATCATAAAAAAA
* * *
11535984 TA-TAATTGTAACGTAAATAATTAAGTGAGCAACATAAAATTTTAATTAATTATTATTTTTTGTA
1 TATTAA-TGTAACGTAAATAATTAAGTGAGTAACATAAAATTTTAATTAATTATTGTTTTGTGTA
* * * *
11536048 AATATATAAGAAAAATAGATAAAATTTAAAAAAAACAAATAGGTAACGTGAACAAGTAAGAAGAA
65 AATATATAAGAAAAATAGATAAAA--TAAAAAAAACAAATAGATAACATAAACAAGTAAGAAAAA
* ** * *
11536113 GTGTAAAATTCGTATAATTTGGTATAAAATAGGTAAGAAATGTCATAACACATTAAAAAAATAGT
128 GTATAAAATTC-TATAATTTGACATAAAATAGGTAAGAAATATCATAACACATTAAAAAAATAGC
* * * * **
11536178 TATAACAATTCTAAACTTATTGGAATTATGAGAACAATCATACGAAAA
192 TATAACAATTCTAAACTTAATGGAACTATAAAAACAATCATAAAAAAA
*
11536226 TATTAATGTAACATAAAATAATTAAAGTGA-TAACATAAAATTTTAATTAATTATTGTT
1 TATTAATGTAACGT-AAATAATT-AAGTGAGTAACATAAAATTTTAATTAATTATTGTT
11536284 AATGTAACCA
Statistics
Matches: 433, Mismatches: 68, Indels: 56
0.78 0.12 0.10
Matches are distributed among these distances:
228 14 0.03
229 57 0.13
230 22 0.05
232 1 0.00
233 30 0.07
234 4 0.01
235 48 0.11
236 56 0.13
237 12 0.03
238 15 0.03
240 48 0.11
241 21 0.05
242 61 0.14
243 38 0.09
244 6 0.01
ACGTcount: A:0.51, C:0.07, G:0.10, T:0.32
Consensus pattern (239 bp):
TATTAATGTAACGTAAATAATTAAGTGAGTAACATAAAATTTTAATTAATTATTGTTTTGTGTAA
ATATATAAGAAAAATAGATAAAATAAAAAAAACAAATAGATAACATAAACAAGTAAGAAAAAGTA
TAAAATTCTATAATTTGACATAAAATAGGTAAGAAATATCATAACACATTAAAAAAATAGCTATA
ACAATTCTAAACTTAATGGAACTATAAAAACAATCATAAAAAAA
Found at i:11537700 original size:18 final size:17
Alignment explanation
Indices: 11537650--11537706 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 17
11537640 TAAAATAAAA
11537650 TTTTCTTTTTCTTCTTCT
1 TTTTC-TTTTCTTCTTCT
11537668 TTTTCATTTTCTTCTT-T
1 TTTTC-TTTTCTTCTTCT
11537685 TTTTCTCTTTCATTCTCTCT
1 TTTTCT-TTTC-TTCT-TCT
11537705 TT
1 TT
11537707 AAAATCCATA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
16 1 0.03
17 10 0.29
18 19 0.56
19 1 0.03
20 3 0.09
ACGTcount: A:0.04, C:0.23, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTCTTTTCTTCTTCT
Found at i:11541946 original size:28 final size:29
Alignment explanation
Indices: 11541914--11541981 Score: 75
Period size: 28 Copynumber: 2.3 Consensus size: 29
11541904 AATTTAATTT
11541914 AATTAATAAAAATAAAATAATATAATTCG
1 AATTAATAAAAATAAAATAATATAATTCG
** * * *
11541943 -ATTAATTTAATTTAAATAATTTAATTCG
1 AATTAATAAAAATAAAATAATATAATTCG
11541971 AAATTAATAAA
1 -AATTAATAAA
11541982 CCGACTTAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
28 23 0.77
30 7 0.23
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (29 bp):
AATTAATAAAAATAAAATAATATAATTCG
Found at i:11543438 original size:1 final size:1
Alignment explanation
Indices: 11543432--11543489 Score: 53
Period size: 1 Copynumber: 58.0 Consensus size: 1
11543422 ACTCAAAATA
* * * * * * *
11543432 TTTTTTTTTTGTTTTTCTTTCTTTCTTCTCTTTTTTTTTTTTTTCTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
11543490 GGAAATTTTG
Statistics
Matches: 43, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.00, C:0.10, G:0.02, T:0.88
Consensus pattern (1 bp):
T
Found at i:11543476 original size:20 final size:18
Alignment explanation
Indices: 11543437--11543489 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 18
11543427 AAATATTTTT
11543437 TTTTTGTTTTTCTTTCTTTC
1 TTTTT-TTTTT-TTTCTTTC
*
11543457 TTCTCTTTTTTTTTTTTTTC
1 TT-T-TTTTTTTTTTCTTTC
11543477 TTTTTTTTTTTTT
1 TTTTTTTTTTTTT
11543490 GGAAATTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
18 10 0.33
19 1 0.03
20 11 0.37
21 6 0.20
22 2 0.07
ACGTcount: A:0.00, C:0.11, G:0.02, T:0.87
Consensus pattern (18 bp):
TTTTTTTTTTTTTCTTTC
Found at i:11548460 original size:16 final size:17
Alignment explanation
Indices: 11548431--11548464 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
11548421 GAGGACTGTG
11548431 TTTTGTTTTGTGATTTT
1 TTTTGTTTTGTGATTTT
11548448 TTTTGTTTT-TGATTTT
1 TTTTGTTTTGTGATTTT
11548464 T
1 T
11548465 GGCTGGGTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.06, C:0.00, G:0.15, T:0.79
Consensus pattern (17 bp):
TTTTGTTTTGTGATTTT
Found at i:11550383 original size:43 final size:43
Alignment explanation
Indices: 11550315--11550399 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
11550305 ACTTAAAATG
*
11550315 AATATATGACAATTTAATGATCTTACATGAG-AAATGAAGATAA
1 AATATATGACAATTTAATGACCTTACATG-GCAAATGAAGATAA
* * *
11550358 AATATATGATAATTTGATGGCCTTACATGGCAAATGAAGATA
1 AATATATGACAATTTAATGACCTTACATGGCAAATGAAGATA
11550400 GCATATGTGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
42 1 0.03
43 36 0.97
ACGTcount: A:0.45, C:0.08, G:0.16, T:0.31
Consensus pattern (43 bp):
AATATATGACAATTTAATGACCTTACATGGCAAATGAAGATAA
Found at i:11551798 original size:20 final size:20
Alignment explanation
Indices: 11551773--11551811 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
11551763 TAAGACGAGT
*
11551773 TCAAGTCTGGTTAT-AAGTGA
1 TCAAGT-TGCTTATGAAGTGA
11551793 TCAAGTTGCTTATGAAGTG
1 TCAAGTTGCTTATGAAGTG
11551812 CATTAAGCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.28, C:0.10, G:0.26, T:0.36
Consensus pattern (20 bp):
TCAAGTTGCTTATGAAGTGA
Found at i:11552383 original size:20 final size:20
Alignment explanation
Indices: 11552353--11552391 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
11552343 CCATTTGAAA
11552353 TAGATGAGCTTAGAGTAGTTT
1 TAGATGAGCTTAGAG-AGTTT
11552374 TAGA-GAGCTTAGAGAGTT
1 TAGATGAGCTTAGAGAGTT
11552392 CATTAGAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 10 0.56
21 4 0.22
ACGTcount: A:0.31, C:0.05, G:0.31, T:0.33
Consensus pattern (20 bp):
TAGATGAGCTTAGAGAGTTT
Found at i:11555200 original size:21 final size:20
Alignment explanation
Indices: 11555166--11555205 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
11555156 ATCCTTTTAA
*
11555166 TAAAATATTTAAAACAAATT
1 TAAAATATTTAAAAAAAATT
*
11555186 TAAAATTTATTAAAAAAAAT
1 TAAAATAT-TTAAAAAAAAT
11555206 ATTTATGGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (20 bp):
TAAAATATTTAAAAAAAATT
Found at i:11555850 original size:14 final size:14
Alignment explanation
Indices: 11555831--11555997 Score: 114
Period size: 14 Copynumber: 11.4 Consensus size: 14
11555821 TTTAAGGCTT
*
11555831 AGTTTATGGTTTAG
1 AGTTTAGGGTTTAG
11555845 AGTTTATGGTTGTTTTTAGG
1 AGTTTA-GG--G--TTTA-G
11555865 AG-TTAGGGTTTA-
1 AGTTTAGGGTTTAG
11555877 AGTTTAGGGTTTAG
1 AGTTTAGGGTTTAG
11555891 ATTTAAGGTTTAGGGTTTAAG
1 -----A-GTTTAGGGTTT-AG
*
11555912 GGTTTAGGGTTTAG
1 AGTTTAGGGTTTAG
11555926 -GATTTAGGGTTTAG
1 AG-TTTAGGGTTTAG
*
11555940 GGTTTAGGGTTTAG
1 AGTTTAGGGTTTAG
11555954 -GTTTAGGGTTTAG
1 AGTTTAGGGTTTAG
*
11555967 AGTTTAAGGTTT-G
1 AGTTTAGGGTTTAG
*
11555980 -GTTTA-GGATTAG
1 AGTTTAGGGTTTAG
11555992 AGTTTA
1 AGTTTA
11555998 AGATTCAGTG
Statistics
Matches: 129, Mismatches: 4, Indels: 41
0.74 0.02 0.24
Matches are distributed among these distances:
11 4 0.03
12 8 0.06
13 30 0.23
14 46 0.36
15 13 0.10
16 1 0.01
17 1 0.01
18 2 0.02
19 8 0.06
20 14 0.11
21 2 0.02
ACGTcount: A:0.21, C:0.00, G:0.34, T:0.46
Consensus pattern (14 bp):
AGTTTAGGGTTTAG
Found at i:11555882 original size:20 final size:21
Alignment explanation
Indices: 11555859--11555987 Score: 123
Period size: 20 Copynumber: 6.3 Consensus size: 21
11555849 TATGGTTGTT
*
11555859 TTTAGGAG-TTAGGGTTTAAG
1 TTTAGGAGTTTAGGGTTTAGG
*
11555879 TTTAGG-GTTTA-GATTTAAGG
1 TTTAGGAGTTTAGGGTTT-AGG
11555899 TTTAGG-GTTTAAGGGTTTAGGG
1 TTTAGGAGTTT-AGGGTTTA-GG
11555921 TTTAGGA-TTTAGGGTTTAGGG
1 TTTAGGAGTTTAGGGTTTA-GG
11555942 TTTAGG-GTTTA-GGTTTAGGG
1 TTTAGGAGTTTAGGGTTTA-GG
*
11555962 TTTA-GAGTTTAAGGTTT-GG
1 TTTAGGAGTTTAGGGTTTAGG
11555981 TTTAGGA
1 TTTAGGA
11555988 TTAGAGTTTA
Statistics
Matches: 96, Mismatches: 3, Indels: 20
0.81 0.03 0.17
Matches are distributed among these distances:
19 12 0.12
20 41 0.43
21 28 0.29
22 15 0.16
ACGTcount: A:0.21, C:0.00, G:0.36, T:0.43
Consensus pattern (21 bp):
TTTAGGAGTTTAGGGTTTAGG
Found at i:11555888 original size:7 final size:7
Alignment explanation
Indices: 11555867--11555986 Score: 142
Period size: 7 Copynumber: 17.7 Consensus size: 7
11555857 TTTTTAGGAG
11555867 TTAGGGT
1 TTAGGGT
*
11555874 TTA-AGT
1 TTAGGGT
11555880 TTAGGGT
1 TTAGGGT
*
11555887 TTA-GAT
1 TTAGGGT
*
11555893 TTAAGGT
1 TTAGGGT
11555900 TTAGGGT
1 TTAGGGT
11555907 TTAAGGGT
1 TT-AGGGT
11555915 TTAGGGT
1 TTAGGGT
*
11555922 TTAGGAT
1 TTAGGGT
11555929 TTAGGGT
1 TTAGGGT
11555936 TTAGGGT
1 TTAGGGT
11555943 TTAGGGT
1 TTAGGGT
11555950 TTA-GGT
1 TTAGGGT
11555956 TTAGGGT
1 TTAGGGT
*
11555963 TTAGAGT
1 TTAGGGT
*
11555970 TTAAGGT
1 TTAGGGT
11555977 TT--GGT
1 TTAGGGT
11555982 TTAGG
1 TTAGG
11555987 ATTAGAGTTT
Statistics
Matches: 97, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
5 5 0.05
6 16 0.16
7 69 0.71
8 7 0.07
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.44
Consensus pattern (7 bp):
TTAGGGT
Found at i:11556114 original size:15 final size:15
Alignment explanation
Indices: 11556079--11556115 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
11556069 AAAAAATAAC
*
11556079 CAAAATACCATTGAT
1 CAAAATGCCATTGAT
11556094 -AAAATGCCATTGAT
1 CAAAATGCCATTGAT
11556108 CAAAATGC
1 CAAAATGC
11556116 AAATTTTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.46, C:0.19, G:0.11, T:0.24
Consensus pattern (15 bp):
CAAAATGCCATTGAT
Found at i:11557012 original size:22 final size:22
Alignment explanation
Indices: 11556953--11557013 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
11556943 AAAAATCCAA
*
11556953 GAAAAATAATATA-AAATGTAT
1 GAAAAATAGTATAGAAATGTAT
* *
11556974 G-GAAATGAGTATGGAAATGTAT
1 GAAAAAT-AGTATAGAAATGTAT
*
11556996 GAAAAATAGGATAGAAAT
1 GAAAAATAGTATAGAAAT
11557014 TATACCTCCA
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
20 4 0.13
21 5 0.16
22 18 0.58
23 4 0.13
ACGTcount: A:0.54, C:0.00, G:0.21, T:0.25
Consensus pattern (22 bp):
GAAAAATAGTATAGAAATGTAT
Found at i:11558368 original size:21 final size:24
Alignment explanation
Indices: 11558333--11558379 Score: 64
Period size: 21 Copynumber: 2.1 Consensus size: 24
11558323 CATCAAAGGT
*
11558333 TTTGAATATTTTAAAATCTTC-AC
1 TTTGAATATTTTAAAATATTCTAC
11558356 TTTGAA-A-TTTAAAATATTCTAC
1 TTTGAATATTTTAAAATATTCTAC
11558378 TT
1 TT
11558380 AGAAGACTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 11 0.50
22 5 0.23
23 6 0.27
ACGTcount: A:0.36, C:0.11, G:0.04, T:0.49
Consensus pattern (24 bp):
TTTGAATATTTTAAAATATTCTAC
Found at i:11558770 original size:40 final size:41
Alignment explanation
Indices: 11558555--11558845 Score: 172
Period size: 40 Copynumber: 7.3 Consensus size: 41
11558545 AGAGGTCTTC
* * * * *
11558555 AAAAATTTTAAATTCTGC-TCATAGGTCTT-GAAGTCATTT
1 AAAAATTTAAAATTTTGCTTGAGAGGTCTTGGAAATCATTT
* * * **
11558594 AAAAATTTAAGATTTTGTTTGA-AGATCTTAAAAATCATTT
1 AAAAATTTAAAATTTTGCTTGAGAGGTCTTGGAAATCATTT
* * *
11558634 AAAATTTTAAGATTTTGCTT-AGAGGACTTGGAAATCATTT
1 AAAAATTTAAAATTTTGCTTGAGAGGTCTTGGAAATCATTT
* * * ** * * *
11558674 AAAAATATAAAAATCT-CTTTTGAGGTCTTGGGAATTATTC
1 AAAAATTTAAAATTTTGCTTGAGAGGTCTTGGAAATCATTT
* *** * *
11558714 AAAAATCTATGGTTTTG-TTGAGAGGTCTTGGAAATCGTTC
1 AAAAATTTAAAATTTTGCTTGAGAGGTCTTGGAAATCATTT
* *
11558754 AAAAATTTAAAATTTTGCTCGAG-GGTCTCAGG-AAT--TGTT
1 AAAAATTTAAAATTTTGCTTGAGAGGTCT-TGGAAATCAT-TT
* * * **
11558793 AAAATTTTCAAAATTTTGCCT-AGAGATCTTGGAAATTGTTT
1 AAAAATTT-AAAATTTTGCTTGAGAGGTCTTGGAAATCATTT
11558834 AAAAATTTAAAA
1 AAAAATTTAAAA
11558846 ATTCTACCTT
Statistics
Matches: 191, Mismatches: 48, Indels: 25
0.72 0.18 0.09
Matches are distributed among these distances:
38 1 0.01
39 36 0.19
40 138 0.72
41 15 0.08
42 1 0.01
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (41 bp):
AAAAATTTAAAATTTTGCTTGAGAGGTCTTGGAAATCATTT
Found at i:11558848 original size:41 final size:41
Alignment explanation
Indices: 11558734--11558886 Score: 127
Period size: 41 Copynumber: 3.8 Consensus size: 41
11558724 GGTTTTGTTG
* * *
11558734 AGAGGTCTTGGAAATCGTTCAAAAATTT-AAAATTTTG-CT
1 AGAGATCTTGGAAATTGTTTAAAAATTTAAAAATTTTGCCT
* * * * *
11558773 CGAGGGTCTCAGG-AATTG-TTAAAATTTTCAAAATTTTGCCT
1 AGA-GATCT-TGGAAATTGTTTAAAAATTTAAAAATTTTGCCT
* *
11558814 AGAGATCTTGGAAATTGTTTAAAAATTTAAAAATTCTACCT
1 AGAGATCTTGGAAATTGTTTAAAAATTTAAAAATTTTGCCT
* * *
11558855 TGAGATATT-GAAATTCTTTCAAAAATTTAAAA
1 AGAGATCTTGGAAATTGTTT-AAAAATTTAAAA
11558887 TTCTACATGA
Statistics
Matches: 92, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
39 12 0.13
40 36 0.39
41 44 0.48
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (41 bp):
AGAGATCTTGGAAATTGTTTAAAAATTTAAAAATTTTGCCT
Found at i:11558906 original size:40 final size:40
Alignment explanation
Indices: 11558815--11558912 Score: 110
Period size: 40 Copynumber: 2.4 Consensus size: 40
11558805 ATTTTGCCTA
* * *
11558815 GAGATCTTGGAAATTGTTTAAAAATTTAAAAATTCTACCTT
1 GAGATATT-GAAATTCTTTAAAAATTTAAAAATTCTACCAT
11558856 GAGATATTGAAATTCTTTCAAAAATTT-AAAATTCTA-CAT
1 GAGATATTGAAATTCTTT-AAAAATTTAAAAATTCTACCAT
* *
11558895 GAAGGTGTTGAAATTCTT
1 G-AGATATTGAAATTCTT
11558913 ATACTCATTC
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
39 3 0.06
40 32 0.64
41 15 0.30
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (40 bp):
GAGATATTGAAATTCTTTAAAAATTTAAAAATTCTACCAT
Found at i:11565915 original size:39 final size:39
Alignment explanation
Indices: 11565859--11565948 Score: 135
Period size: 39 Copynumber: 2.3 Consensus size: 39
11565849 GGAGATGGAC
*
11565859 TGCACGTATTATCTATTAAGATGTGCATGAAATAGAATGCA
1 TGCAC-TA-TATCTATTAAGAGGTGCATGAAATAGAATGCA
* *
11565900 TGTACTATATCTATTAAGAGGTGCATGAAATGGAATGCA
1 TGCACTATATCTATTAAGAGGTGCATGAAATAGAATGCA
11565939 TGCACTATAT
1 TGCACTATAT
11565949 ATTAGGATAT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 39 0.87
40 2 0.04
41 4 0.09
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (39 bp):
TGCACTATATCTATTAAGAGGTGCATGAAATAGAATGCA
Found at i:11567055 original size:20 final size:20
Alignment explanation
Indices: 11567032--11567071 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
11567022 AGGTCAAACC
*
11567032 TAGTCAAACTTGATCAAAAT
1 TAGTCAAACTCGATCAAAAT
*
11567052 TAGTCAAACTCGATTAAAAT
1 TAGTCAAACTCGATCAAAAT
11567072 GGATGGAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (20 bp):
TAGTCAAACTCGATCAAAAT
Found at i:11569127 original size:18 final size:17
Alignment explanation
Indices: 11569106--11569174 Score: 66
Period size: 18 Copynumber: 3.8 Consensus size: 17
11569096 ACCAAACCCC
11569106 AAACCCTAAACAAAGCCT
1 AAACCCTAAACAAA-CCT
*
11569124 AAACCCTAAACTTAACCCT
1 AAACCCTAAAC--AAACCT
* *
11569143 AAACCCCAACCAAACCTT
1 AAACCCTAAACAAACC-T
*
11569161 AAACCTTAAACAAA
1 AAACCCTAAACAAA
11569175 ACCCTAAAAC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
17 4 0.10
18 23 0.56
19 12 0.29
20 2 0.05
ACGTcount: A:0.49, C:0.35, G:0.01, T:0.14
Consensus pattern (17 bp):
AAACCCTAAACAAACCT
Found at i:11569134 original size:37 final size:37
Alignment explanation
Indices: 11569093--11569202 Score: 105
Period size: 37 Copynumber: 2.9 Consensus size: 37
11569083 GCTTATACTT
* *
11569093 TAAACCAAACCCCAAACCCTAAACAAAGCC-TAAACCC
1 TAAACAAAACCCCAAACCCCAAACAAA-CCTTAAACCC
** * * *
11569130 TAAACTTAACCCTAAACCCCAACCAAACCTTAAACCT
1 TAAACAAAACCCCAAACCCCAAACAAACCTTAAACCC
* * *
11569167 TAAACAAAACCCTAAAACCCAACCTAAACCTTAAAC
1 TAAACAAAACCCCAAACCCCAAAC-AAACCTTAAAC
11569203 AAAACCTAAC
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
36 2 0.03
37 49 0.79
38 11 0.18
ACGTcount: A:0.48, C:0.37, G:0.01, T:0.14
Consensus pattern (37 bp):
TAAACAAAACCCCAAACCCCAAACAAACCTTAAACCC
Found at i:11569195 original size:31 final size:30
Alignment explanation
Indices: 11569150--11569226 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 30
11569140 CCTAAACCCC
*
11569150 AACCAAACCTTAAACCTTAAACAAAACCCTAA
1 AACCCAACC-TAAACCTTAAACAAAA-CCTAA
11569182 AACCCAACCTAAACCTTAAACAAAACCTAA
1 AACCCAACCTAAACCTTAAACAAAACCTAA
*
11569212 CACCCAAACC-AAACC
1 AACCC-AACCTAAACC
11569227 CCAAAGCCTA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
30 14 0.33
31 20 0.48
32 8 0.19
ACGTcount: A:0.52, C:0.36, G:0.00, T:0.12
Consensus pattern (30 bp):
AACCCAACCTAAACCTTAAACAAAACCTAA
Found at i:11569208 original size:18 final size:18
Alignment explanation
Indices: 11569092--11569211 Score: 54
Period size: 18 Copynumber: 6.8 Consensus size: 18
11569082 AGCTTATACT
* *
11569092 TTAAACCAAACCCCAAACC
1 TTAAA-CAAAACCTAAACC
* *
11569111 CTAAACAAAGCCTAAACC
1 TTAAACAAAACCTAAACC
* * *
11569129 CTAAACTTAACCCTAAACC
1 TTAAAC-AAAACCTAAACC
** *
11569148 -CCAACCAAACCTTAAACC
1 TTAAACAAAACC-TAAACC
11569166 TTAAACAAAA-C----CC
1 TTAAACAAAACCTAAACC
* **
11569179 TAAAACCCAACCTAAACC
1 TTAAACAAAACCTAAACC
11569197 TTAAACAAAACCTAA
1 TTAAACAAAACCTAA
11569212 CACCCAAACC
Statistics
Matches: 75, Mismatches: 18, Indels: 17
0.68 0.16 0.15
Matches are distributed among these distances:
13 9 0.12
14 1 0.01
17 4 0.05
18 41 0.55
19 20 0.27
ACGTcount: A:0.49, C:0.36, G:0.01, T:0.14
Consensus pattern (18 bp):
TTAAACAAAACCTAAACC
Found at i:11569226 original size:49 final size:48
Alignment explanation
Indices: 11569168--11569282 Score: 124
Period size: 49 Copynumber: 2.4 Consensus size: 48
11569158 CTTAAACCTT
* * * *
11569168 AAACAAAACCCTAAAACCCAACCTAAACCTTAAACAAAACCTAA-CACCC
1 AAACCAAACCCCAAAACCCAACCTAAAACATAAAC-AAACCTAACCA-CC
* * * * *
11569217 AAACCAAACCCCAAAGCCTAACCTAAAACATAAACTAATCTAACCACT
1 AAACCAAACCCCAAAACCCAACCTAAAACATAAACAAACCTAACCACC
11569265 AAACCAAACCCCAAAACC
1 AAACCAAACCCCAAAACC
11569283 TAAACCTGGA
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
48 24 0.44
49 31 0.56
ACGTcount: A:0.52, C:0.37, G:0.01, T:0.10
Consensus pattern (48 bp):
AAACCAAACCCCAAAACCCAACCTAAAACATAAACAAACCTAACCACC
Found at i:11569289 original size:49 final size:45
Alignment explanation
Indices: 11569187--11569341 Score: 127
Period size: 50 Copynumber: 3.3 Consensus size: 45
11569177 CCTAAAACCC
*
11569187 AACCTAAACCTTAAACAAAACCTAAC--ACCC-AAACCAAACCCCAA
1 AACCT-AACCTAAAACAAAA-CTAACTAACCCTAAACCAAACCCCAA
*
11569231 AGCCTAACCTAAAACATAAACTAATCTAACCACTAAACCAAACCCCAA
1 AACCTAACCTAAAACA-AAACTAA-CTAACC-CTAAACCAAACCCCAA
* ** * *
11569279 AACCTAAACCTGGATCCCAAGCTAACCCTGAACCCTAAACCAAACCCCAA
1 AACCT-AACCT-AAAACAAAACTAA--CT-AACCCTAAACCAAACCCCAA
*
11569329 ACCCTAACCTAAA
1 AACCTAACCTAAA
11569342 TCCCAAACCA
Statistics
Matches: 89, Mismatches: 12, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
43 14 0.16
44 8 0.09
46 3 0.03
47 1 0.01
48 19 0.21
49 16 0.18
50 24 0.27
51 4 0.04
ACGTcount: A:0.47, C:0.37, G:0.03, T:0.12
Consensus pattern (45 bp):
AACCTAACCTAAAACAAAACTAACTAACCCTAAACCAAACCCCAA
Found at i:11569331 original size:19 final size:19
Alignment explanation
Indices: 11569309--11569350 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
11569299 GCTAACCCTG
11569309 AACCCTAAACC-AAACCCCA
1 AACCCT-AACCTAAACCCCA
*
11569328 AACCCTAACCTAAATCCCA
1 AACCCTAACCTAAACCCCA
11569347 AACC
1 AACC
11569351 AATCCAAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.45, C:0.45, G:0.00, T:0.10
Consensus pattern (19 bp):
AACCCTAACCTAAACCCCA
Found at i:11571436 original size:28 final size:27
Alignment explanation
Indices: 11571408--11571493 Score: 104
Period size: 28 Copynumber: 3.2 Consensus size: 27
11571398 GGGCTAAGGT
*
11571408 TTTAGATTT-AGAGTTTAGGGTTAGGGG
1 TTTAGATTTAAG-GTTTAGGTTTAGGGG
** *
11571435 TTGGGATTTAAGGTTTAATGTTTAGGGG
1 TTTAGATTTAAGGTTT-AGGTTTAGGGG
11571463 TTTAGATTTAAGGTTTAGGTTTA-GGG
1 TTTAGATTTAAGGTTTAGGTTTAGGGG
11571489 TTTAG
1 TTTAG
11571494 CGTTTAGGGT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
26 8 0.16
27 17 0.34
28 25 0.50
ACGTcount: A:0.22, C:0.00, G:0.34, T:0.44
Consensus pattern (27 bp):
TTTAGATTTAAGGTTTAGGTTTAGGGG
Found at i:11571451 original size:7 final size:7
Alignment explanation
Indices: 11571441--11571526 Score: 58
Period size: 7 Copynumber: 12.9 Consensus size: 7
11571431 GGGGTTGGGA
11571441 TTTAAGG
1 TTTAAGG
*
11571448 TTTAATG
1 TTTAAGG
*
11571455 TTTAGGGG
1 TTTA-AGG
*
11571463 TTT-AGA
1 TTTAAGG
11571469 TTTAAGG
1 TTTAAGG
11571476 TTT-AGG
1 TTTAAGG
*
11571482 TTTAGGG
1 TTTAAGG
11571489 TTT-AGCG
1 TTTAAG-G
*
11571496 TTTAGGG
1 TTTAAGG
*
11571503 TTTAAAG
1 TTTAAGG
11571510 TTT-A-G
1 TTTAAGG
11571515 TTT-AGG
1 TTTAAGG
11571521 TTTAAG
1 TTTAAG
11571527 TTTTGGGGTT
Statistics
Matches: 61, Mismatches: 11, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
5 5 0.08
6 16 0.26
7 35 0.57
8 5 0.08
ACGTcount: A:0.23, C:0.01, G:0.29, T:0.47
Consensus pattern (7 bp):
TTTAAGG
Found at i:11571482 original size:6 final size:6
Alignment explanation
Indices: 11571461--11571529 Score: 59
Period size: 7 Copynumber: 10.8 Consensus size: 6
11571451 AATGTTTAGG
* *
11571461 GGTTTA GATTTAA GGTTTA GGTTTA GGGTTTA GCGTTTA GGGTTTAA AGTTTA
1 GGTTTA GGTTT-A GGTTTA GGTTTA -GGTTTA G-GTTTA -GGTTT-A GGTTTA
*
11571514 -GTTTA GGTTTA AGTTT
1 GGTTTA GGTTTA GGTTT
11571530 TGGGGTTAGG
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
5 5 0.09
6 22 0.42
7 24 0.45
8 2 0.04
ACGTcount: A:0.22, C:0.01, G:0.29, T:0.48
Consensus pattern (6 bp):
GGTTTA
Found at i:11571492 original size:34 final size:33
Alignment explanation
Indices: 11571462--11571524 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 33
11571452 ATGTTTAGGG
*
11571462 GTTTA-GATTTAAGGTTTAGGTTTAGGGTTTAGC
1 GTTTAGGATTTAAAGTTTAGGTTTA-GGTTTAGC
*
11571495 GTTTAGGGTTTAAAGTTTA-GTTTAGGTTTA
1 GTTTAGGATTTAAAGTTTAGGTTTAGGTTTA
11571525 AGTTTTGGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 6 0.22
33 10 0.37
34 11 0.41
ACGTcount: A:0.22, C:0.02, G:0.29, T:0.48
Consensus pattern (33 bp):
GTTTAGGATTTAAAGTTTAGGTTTAGGTTTAGC
Found at i:11572551 original size:21 final size:23
Alignment explanation
Indices: 11572525--11572585 Score: 76
Period size: 22 Copynumber: 2.8 Consensus size: 23
11572515 AAAAATCCAA
11572525 GAAAAATAA-TAT-GAAATGTAT
1 GAAAAATAAGTATAGAAATGTAT
*
11572546 GGAAAA-AAGTATAGAAATGTAT
1 GAAAAATAAGTATAGAAATGTAT
*
11572568 GAAAAAT-AGGATAGAAAT
1 GAAAAATAAGTATAGAAAT
11572586 TATACCTCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
20 2 0.06
21 8 0.24
22 24 0.71
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (23 bp):
GAAAAATAAGTATAGAAATGTAT
Found at i:11575678 original size:78 final size:79
Alignment explanation
Indices: 11575591--11575746 Score: 278
Period size: 78 Copynumber: 2.0 Consensus size: 79
11575581 ATTAATAACT
11575591 TTTCTCTATGATTTTAAAATCATCTAACATTTGAATAATCAAATAAGATATAAATTTTTTT-AAA
1 TTTCTCTATGATTTTAAAATCATCTAACATTTGAATAATCAAATAAGATATAAATTTTTTTAAAA
11575655 TAATCAATCACACA
66 TAATCAATCACACA
* * *
11575669 TTTCTCTATGATTTTGAAATCGTCTAACCTTTGAATAATCAAATAAGATATAAATTTTTTTAAAA
1 TTTCTCTATGATTTTAAAATCATCTAACATTTGAATAATCAAATAAGATATAAATTTTTTTAAAA
11575734 TAATCAATCACAC
66 TAATCAATCACAC
11575747 TAAAAGGAAA
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
78 58 0.78
79 16 0.22
ACGTcount: A:0.42, C:0.13, G:0.05, T:0.40
Consensus pattern (79 bp):
TTTCTCTATGATTTTAAAATCATCTAACATTTGAATAATCAAATAAGATATAAATTTTTTTAAAA
TAATCAATCACACA
Found at i:11588739 original size:20 final size:20
Alignment explanation
Indices: 11588709--11588788 Score: 58
Period size: 20 Copynumber: 4.0 Consensus size: 20
11588699 CTGCTACTAA
11588709 CTTTCTTTTCTTCTTGTTTTT
1 CTTT-TTTTCTTCTTGTTTTT
**
11588730 CTTTTTTTC-TCTAATTTTT
1 CTTTTTTTCTTCTTGTTTTT
* *
11588749 GTCTTTCTTCTTTGCTTG-TTTT
1 CT-TTTTTTC-TT-CTTGTTTTT
*
11588771 C-TTTTTTCTCCTTGTTTT
1 CTTTTTTTCTTCTTGTTTT
11588789 GAAATTAATT
Statistics
Matches: 45, Mismatches: 9, Indels: 12
0.68 0.14 0.18
Matches are distributed among these distances:
18 4 0.09
19 13 0.29
20 17 0.38
21 4 0.09
22 5 0.11
23 2 0.04
ACGTcount: A:0.03, C:0.19, G:0.06, T:0.72
Consensus pattern (20 bp):
CTTTTTTTCTTCTTGTTTTT
Found at i:11590076 original size:18 final size:20
Alignment explanation
Indices: 11590040--11590078 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
11590030 GATCAAAATA
11590040 AAATCAAATATTATAATTTT
1 AAATCAAATATTATAATTTT
11590060 AAATC-AATATT-TAATTTT
1 AAATCAAATATTATAATTTT
11590078 A
1 A
11590079 TTAATATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.42
19 6 0.32
20 5 0.26
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (20 bp):
AAATCAAATATTATAATTTT
Found at i:11590086 original size:16 final size:17
Alignment explanation
Indices: 11590041--11590087 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 17
11590031 ATCAAAATAA
11590041 AATCAAATATTATAATTTT
1 AATC-AATATT-TAATTTT
11590060 AAATCAATATTTAATTTT
1 -AATCAATATTTAATTTT
*
11590078 -ATTAATATTT
1 AATCAATATTT
11590088 TCACCTCTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
16 9 0.35
18 7 0.27
19 6 0.23
20 4 0.15
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (17 bp):
AATCAATATTTAATTTT
Found at i:11590835 original size:30 final size:31
Alignment explanation
Indices: 11590793--11590870 Score: 76
Period size: 30 Copynumber: 2.6 Consensus size: 31
11590783 TTACTCAAAA
*
11590793 ATAAAAAT-AAATTATTGATAA-TTTATTAT
1 ATAAAATTAAAATTATTGATAATTTTATTAT
*
11590822 ATAAAATTAAAATTA-TGA-AATTTTATTTT
1 ATAAAATTAAAATTATTGATAATTTTATTAT
* *
11590851 ATTATAATTACAATT-TTGAT
1 A-TAAAATTAAAATTATTGAT
11590871 GTTATAAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
28 2 0.05
29 18 0.45
30 20 0.50
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.47
Consensus pattern (31 bp):
ATAAAATTAAAATTATTGATAATTTTATTAT
Found at i:11593455 original size:19 final size:18
Alignment explanation
Indices: 11593422--11593469 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
11593412 AAAACTTAAC
*
11593422 AAAAACTATATTTTTAATTT
1 AAAAA-TATAGTTTTAA-TT
* *
11593442 TAAAATATAGTTTTTATT
1 AAAAATATAGTTTTAATT
11593460 AAAAATATAG
1 AAAAATATAG
11593470 AATCAAAGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
18 11 0.46
19 9 0.38
20 4 0.17
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (18 bp):
AAAAATATAGTTTTAATT
Found at i:11594161 original size:89 final size:89
Alignment explanation
Indices: 11593996--11594183 Score: 229
Period size: 89 Copynumber: 2.1 Consensus size: 89
11593986 AAGTAGTTTT
* * * *
11593996 TGAAAGTATAGAAACAAACGAAAAATAATTTTTTTCATAATATATTTTTAAAAAGACTATGTTTT
1 TGAAACTATAGAAACAAACGAAAAATAATTTTTTTCATAATATATTTTCAAAAAAACTACGTTTT
*
11594061 CAATCTTAAAAATA-TAATC-TCTGA
66 CAATC-TAAAAAAAGTAATCTTC-GA
* * * *
11594085 TGAAACTATAGAACCAAAGGAAAAATAATTTTTTTTATAATATATTTTCAACAAAAATTACGTTT
1 TGAAACTATAGAAACAAACGAAAAATAATTTTTTTCATAATATATTTTCAA-AAAAACTACGTTT
* *
11594150 TGAAT-TAAAAAAAGTAATCTTCGT
65 TCAATCTAAAAAAAGTAATCTTCGA
11594174 TGAAACTATA
1 TGAAACTATA
11594184 AAATTAAAAA
Statistics
Matches: 85, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
88 7 0.08
89 62 0.73
90 16 0.19
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.36
Consensus pattern (89 bp):
TGAAACTATAGAAACAAACGAAAAATAATTTTTTTCATAATATATTTTCAAAAAAACTACGTTTT
CAATCTAAAAAAAGTAATCTTCGA
Found at i:11599866 original size:19 final size:19
Alignment explanation
Indices: 11599842--11599879 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
11599832 CCATTTTCTC
11599842 TAGTTT-TTCTTTAGATTTT
1 TAGTTTCTT-TTTAGATTTT
*
11599861 TAGTTTCTTTTTAGGTTTT
1 TAGTTTCTTTTTAGATTTT
11599880 CTTTGTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.13, C:0.05, G:0.13, T:0.68
Consensus pattern (19 bp):
TAGTTTCTTTTTAGATTTT
Found at i:11612996 original size:15 final size:15
Alignment explanation
Indices: 11612976--11613022 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
11612966 AAGGAAGTGA
11612976 TTATACTTAATGAAT
1 TTATACTTAATGAAT
11612991 TTATACTTAATG-A-
1 TTATACTTAATGAAT
*
11613004 TTATACTTAACGAAT
1 TTATACTTAATGAAT
11613019 TTAT
1 TTAT
11613023 CCATTATCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 11 0.38
14 2 0.07
15 16 0.55
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47
Consensus pattern (15 bp):
TTATACTTAATGAAT
Found at i:11613009 original size:13 final size:13
Alignment explanation
Indices: 11612973--11613013 Score: 64
Period size: 13 Copynumber: 3.0 Consensus size: 13
11612963 AGGAAGGAAG
11612973 TGATTATACTTAA
1 TGATTATACTTAA
11612986 TGAATTTATACTTAA
1 TG-A-TTATACTTAA
11613001 TGATTATACTTAA
1 TGATTATACTTAA
11613014 CGAATTTATC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 12 0.46
14 2 0.08
15 12 0.46
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.46
Consensus pattern (13 bp):
TGATTATACTTAA
Found at i:11615137 original size:20 final size:19
Alignment explanation
Indices: 11615103--11615142 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
11615093 AAGTTTTTTT
11615103 AATATAAATATTGAAAATA
1 AATATAAATATTGAAAATA
* *
11615122 AATATGAATCATTGAAGATA
1 AATATAAAT-ATTGAAAATA
11615142 A
1 A
11615143 GATTTTTAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.30
Consensus pattern (19 bp):
AATATAAATATTGAAAATA
Found at i:11616482 original size:14 final size:14
Alignment explanation
Indices: 11616462--11616499 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
11616452 GAAGAATATC
11616462 AATTATAATT-ATT
1 AATTATAATTAATT
11616475 ATATTATAATTAATT
1 A-ATTATAATTAATT
*
11616490 AATTTTAATT
1 AATTATAATT
11616500 TAAAATTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 1 0.05
14 17 0.77
15 4 0.18
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
AATTATAATTAATT
Found at i:11618160 original size:23 final size:24
Alignment explanation
Indices: 11618129--11618184 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 24
11618119 AGGTTTTTAG
*
11618129 TTTACGGTTAAGGTTTAGGGT-TT
1 TTTAGGGTTAAGGTTTAGGGTATT
**
11618152 TTTAGGGTTTTGGTTTAGGGTATT
1 TTTAGGGTTAAGGTTTAGGGTATT
*
11618176 TGTAGGGTT
1 TTTAGGGTT
11618185 TTGAAGTGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 18 0.64
24 10 0.36
ACGTcount: A:0.14, C:0.02, G:0.34, T:0.50
Consensus pattern (24 bp):
TTTAGGGTTAAGGTTTAGGGTATT
Found at i:11618168 original size:13 final size:13
Alignment explanation
Indices: 11618116--11618212 Score: 55
Period size: 13 Copynumber: 7.8 Consensus size: 13
11618106 TTTAGGGTAT
* *
11618116 TTTAGGTTTTTAG
1 TTTAGGGTTTTGG
* **
11618129 TTTACGGTTAAGG
1 TTTAGGGTTTTGG
11618142 TTTAGGG-TTT--
1 TTTAGGGTTTTGG
11618152 TTTAGGGTTTTGG
1 TTTAGGGTTTTGG
11618165 TTTAGGGTATTT-G
1 TTTAGGGT-TTTGG
*
11618178 --TAGGGTTTTGA
1 TTTAGGGTTTTGG
**
11618189 AGT-GGGTTTTGTG
1 TTTAGGGTTTTG-G
11618202 TTTAGGGTTTT
1 TTTAGGGTTTT
11618213 TTTTTCAAGT
Statistics
Matches: 63, Mismatches: 12, Indels: 17
0.68 0.13 0.18
Matches are distributed among these distances:
10 10 0.16
11 9 0.14
12 9 0.14
13 25 0.40
14 10 0.16
ACGTcount: A:0.13, C:0.01, G:0.33, T:0.53
Consensus pattern (13 bp):
TTTAGGGTTTTGG
Found at i:11618186 original size:24 final size:23
Alignment explanation
Indices: 11618140--11618187 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 23
11618130 TTACGGTTAA
*
11618140 GGTTTAGGGTTTTTTAGGGTTTT
1 GGTTTAGGGTTTTGTAGGGTTTT
11618163 GGTTTAGGGTATTTGTAGGGTTTT
1 GGTTTAGGGT-TTTGTAGGGTTTT
11618187 G
1 G
11618188 AAGTGGGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 10 0.43
24 13 0.57
ACGTcount: A:0.10, C:0.00, G:0.38, T:0.52
Consensus pattern (23 bp):
GGTTTAGGGTTTTGTAGGGTTTT
Found at i:11619674 original size:140 final size:142
Alignment explanation
Indices: 11619441--11619695 Score: 370
Period size: 140 Copynumber: 1.8 Consensus size: 142
11619431 AGATGCAATC
* * *
11619441 AAGATTTTTAATGCATTAAAATTCATAAAAAAATTTTTAAACAAGATTTAAAATGTTTCACAAAA
1 AAGATTTTTAATGCATCAAAATTCATAAAAAAATATTTAAACAAGATCTAAAATGTTTCACAAAA
* *
11619506 AATTCACCCTAAAAAGGCCAAATTATGAAAATGCCACTAAAAGGCATTTTAGTAATTCAACCTTT
66 AATTCACCCTAAAAAGGACAAATGATGAAAATGCCACTAAAAGGCATTTTAGTAATTCAACCTTT
11619571 TGAAGTGTAATT
131 TGAAGTGTAATT
* ** * * *
11619583 AAGATTTTTAATGCATCAAATTTCATGCAATAATATTTAAATATGATCT-AAAT-TTTCACAAAA
1 AAGATTTTTAATGCATCAAAATTCATAAAAAAATATTTAAACAAGATCTAAAATGTTTCACAAAA
* * *
11619646 AATTGACCCTAAAAAGGACAAATGATGAAAATGCCTCTAAAAGGCTTTTT
66 AATTCACCCTAAAAAGGACAAATGATGAAAATGCCACTAAAAGGCATTTT
11619696 TTGTAATTTT
Statistics
Matches: 99, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
140 55 0.56
141 4 0.04
142 40 0.40
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.33
Consensus pattern (142 bp):
AAGATTTTTAATGCATCAAAATTCATAAAAAAATATTTAAACAAGATCTAAAATGTTTCACAAAA
AATTCACCCTAAAAAGGACAAATGATGAAAATGCCACTAAAAGGCATTTTAGTAATTCAACCTTT
TGAAGTGTAATT
Found at i:11620463 original size:8 final size:8
Alignment explanation
Indices: 11620438--11620481 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
11620428 GAAAGATCTC
*
11620438 TTTTCTTT
1 TTTTATTT
*
11620446 TTTCTCTTT
1 TTT-TATTT
11620455 TTTTATTT
1 TTTTATTT
*
11620463 TTTTATTC
1 TTTTATTT
11620471 TTTTATTT
1 TTTTATTT
11620479 TTT
1 TTT
11620482 AAAAAACTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
8 24 0.75
9 8 0.25
ACGTcount: A:0.07, C:0.09, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTATTT
Found at i:11620481 original size:16 final size:17
Alignment explanation
Indices: 11620436--11620481 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
11620426 TTGAAAGATC
* *
11620436 TCTTTTCTTTTTTCTCT
1 TCTTTTATTTTTTCTAT
*
11620453 TTTTTTATTTTTT-TAT
1 TCTTTTATTTTTTCTAT
11620469 TCTTTTATTTTTT
1 TCTTTTATTTTTT
11620482 AAAAAACTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.07, C:0.11, G:0.00, T:0.83
Consensus pattern (17 bp):
TCTTTTATTTTTTCTAT
Found at i:11620944 original size:33 final size:33
Alignment explanation
Indices: 11620857--11620991 Score: 99
Period size: 33 Copynumber: 4.0 Consensus size: 33
11620847 AATTAAAACA
* *
11620857 ACCAGGATTGAACTACAAGTCAAAAAATAAAATG
1 ACCA-GATTGAACTACAAGTTAAAAAACAAAATG
* * * * *
11620891 ATCGAGATTAAACCATAAGTTAAAACACAAAATG
1 A-CCAGATTGAACTACAAGTTAAAAAACAAAATG
* * **
11620925 ACCAGATTGAATTACAAGTTAATAAATGAAATG
1 ACCAGATTGAACTACAAGTTAAAAAACAAAATG
** * * * *
11620958 ACGGGACTAAACTATAAGTTGAAAAACAAAATG
1 ACCAGATTGAACTACAAGTTAAAAAACAAAATG
11620991 A
1 A
11620992 TTTGGACTGA
Statistics
Matches: 74, Mismatches: 26, Indels: 3
0.72 0.25 0.03
Matches are distributed among these distances:
33 47 0.64
34 25 0.34
35 2 0.03
ACGTcount: A:0.52, C:0.13, G:0.15, T:0.21
Consensus pattern (33 bp):
ACCAGATTGAACTACAAGTTAAAAAACAAAATG
Found at i:11620957 original size:67 final size:67
Alignment explanation
Indices: 11620810--11620991 Score: 188
Period size: 67 Copynumber: 2.7 Consensus size: 67
11620800 CCACAAGTTG
* * * * * **
11620810 AAAAATAAAATGATTGAGACTAAATCGTAAATTGAAAAATTAAAACAACCAGGATTGAACTACAA
1 AAAAATAAAATGA-CGAGACTAAACCATAAGTTGAAAAA-CAAAATGACCAGGATTGAACTACAA
11620875 GTCA
64 GTCA
* *
11620879 AAAAATAAAATGATCGAGATTAAACCATAAGTT-AAAACACAAAATGACCA-GATTGAATTACAA
1 AAAAATAAAATGA-CGAGACTAAACCATAAGTTGAAAA-ACAAAATGACCAGGATTGAACTACAA
*
11620942 GTTA
64 GTCA
* * * *
11620946 ATAAATGAAATGACGGGACTAAACTATAAGTTGAAAAACAAAATGA
1 AAAAATAAAATGACGAGACTAAACCATAAGTTGAAAAACAAAATGA
11620992 TTTGGACTGA
Statistics
Matches: 96, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
66 25 0.26
67 30 0.31
68 12 0.12
69 29 0.30
ACGTcount: A:0.54, C:0.11, G:0.14, T:0.21
Consensus pattern (67 bp):
AAAAATAAAATGACGAGACTAAACCATAAGTTGAAAAACAAAATGACCAGGATTGAACTACAAGT
CA
Done.