Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 71 of 117
Found at i:13026603 original size:66 final size:67
Alignment explanation
Indices: 13026439--13026606 Score: 196
Period size: 66 Copynumber: 2.5 Consensus size: 67
13026429 TTCATTTGCA
* * * *
13026439 TGCCAACTACACTGGGCTTAAATTTTCATT-GATGCTAGATAATTTGAGCTTAAAATTTGCATCA
1 TGCCAACTAAACTAGGCTTAAATTTTCATTGGGTGCTAGATAAATTGAGCTTAAAATTTGCATCA
13026503 GG
66 GG
* * ** * * * *
13026505 TGCCAACTAAACTTGGTTTAAAACTTCATTGGGTGCTAGCTAAATTGAG-TTTAAATTTTCATTA
1 TGCCAACTAAACTAGGCTTAAATTTTCATTGGGTGCTAGATAAATTGAGCTTAAAATTTGCATCA
13026569 GG
66 GG
* *
13026571 TGCCAATTAATCTAGGCTTAAATTTTCATTGGGTGC
1 TGCCAACTAAACTAGGCTTAAATTTTCATTGGGTGC
13026607 CAACTAATCT
Statistics
Matches: 84, Mismatches: 17, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
66 69 0.82
67 15 0.18
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.37
Consensus pattern (67 bp):
TGCCAACTAAACTAGGCTTAAATTTTCATTGGGTGCTAGATAAATTGAGCTTAAAATTTGCATCA
GG
Found at i:13026625 original size:66 final size:65
Alignment explanation
Indices: 13026439--13026629 Score: 188
Period size: 66 Copynumber: 2.9 Consensus size: 65
13026429 TTCATTTGCA
* * * *
13026439 TGCCAACTACACTGGGCTTAAATTTTCATT-GATGCTAGA-TAATTTGAGCTTAAAATTTGCATC
1 TGCCAACTAAACTAGGCTTAAATTTTCATTGGGTGCTA-ACTAA-TTGAGCTT-AAATTTTCATC
13026502 AGG
63 AGG
* * ** * * *
13026505 TGCCAACTAAACTTGGTTTAAAACTTCATTGGGTGCTAGCTAAATTGAGTTTAAATTTTCATTAG
1 TGCCAACTAAACTAGGCTTAAATTTTCATTGGGTGCTAACT-AATTGAGCTTAAATTTTCATCAG
13026570 G
65 G
* * * *
13026571 TGCCAATTAATCTAGGCTTAAATTTTCATTGGGTGCCAACTAATCTAAGCTTAAATTTT
1 TGCCAACTAAACTAGGCTTAAATTTTCATTGGGTGCTAACTAAT-TGAGCTTAAATTTT
13026630 TATTGAGTGC
Statistics
Matches: 101, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
65 3 0.03
66 82 0.81
67 14 0.14
68 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (65 bp):
TGCCAACTAAACTAGGCTTAAATTTTCATTGGGTGCTAACTAATTGAGCTTAAATTTTCATCAGG
Found at i:13026655 original size:33 final size:33
Alignment explanation
Indices: 13026454--13026658 Score: 127
Period size: 33 Copynumber: 6.2 Consensus size: 33
13026444 ACTACACTGG
* * *
13026454 GCTTAAATTTTCATTGA-TGCTAGATAATTTGA
1 GCTTAAATTTTCATTGAGTGCCAGCTAAATTGA
* * *
13026486 GCTTAAAATTTGCA-TCAGGTGCCAACTAAACTTG-
1 GCTT-AAATTTTCATTGA-GTGCCAGCTAAA-TTGA
* ** * *
13026520 GTTTAAAACTTCATTGGGTGCTAGCTAAATTGA
1 GCTTAAATTTTCATTGAGTGCCAGCTAAATTGA
* * *
13026553 GTTTAAATTTTCATT-AGGTGCCA-ATTAATCT-A
1 GCTTAAATTTTCATTGA-GTGCCAGCTAAAT-TGA
* * *
13026585 GGCTTAAATTTTCATTGGGTGCCAACT-AATCTAA
1 -GCTTAAATTTTCATTGAGTGCCAGCTAAAT-TGA
* *
13026619 GCTTAAATTTTTATTGAGTGCTAGCTAAATTGA
1 GCTTAAATTTTCATTGAGTGCCAGCTAAATTGA
13026652 GCTTAAA
1 GCTTAAA
13026659 ACTTTATCGG
Statistics
Matches: 132, Mismatches: 28, Indels: 25
0.71 0.15 0.14
Matches are distributed among these distances:
32 14 0.11
33 99 0.75
34 16 0.12
35 3 0.02
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (33 bp):
GCTTAAATTTTCATTGAGTGCCAGCTAAATTGA
Found at i:13027318 original size:26 final size:27
Alignment explanation
Indices: 13027288--13027351 Score: 80
Period size: 26 Copynumber: 2.4 Consensus size: 27
13027278 TATTAAAAAT
*
13027288 TAATTAAGAAATA-TAAAAAT-TTTAAA
1 TAATTAA-AAATATTAAAAATATATAAA
13027314 TAATTAAAAATATTAAAAATATATAAA
1 TAATTAAAAATATTAAAAATATATAAA
*
13027341 -AATTAATAATA
1 TAATTAAAAATA
13027352 AAAAATGTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
25 5 0.15
26 24 0.71
27 5 0.15
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (27 bp):
TAATTAAAAATATTAAAAATATATAAA
Found at i:13027328 original size:9 final size:9
Alignment explanation
Indices: 13027278--13027343 Score: 64
Period size: 9 Copynumber: 7.1 Consensus size: 9
13027268 AAAAAAATTT
13027278 TATTAAAAA
1 TATTAAAAA
13027287 TTAATTAAGAAA
1 -T-ATTAA-AAA
13027299 TA-TAAAAA
1 TATTAAAAA
* *
13027307 TTTTAAATA
1 TATTAAAAA
13027316 -ATTAAAAA
1 TATTAAAAA
13027324 TATTAAAAA
1 TATTAAAAA
13027333 TATATAAAAA
1 TAT-TAAAAA
13027343 T
1 T
13027344 TAATAATAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
8 10 0.21
9 19 0.40
10 9 0.19
11 6 0.13
12 3 0.06
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.35
Consensus pattern (9 bp):
TATTAAAAA
Found at i:13027345 original size:17 final size:17
Alignment explanation
Indices: 13027290--13027357 Score: 70
Period size: 17 Copynumber: 4.0 Consensus size: 17
13027280 TTAAAAATTA
13027290 ATTAAGAAATATAAAAAT
1 ATTAA-AAATATAAAAAT
*
13027308 TTTAAATAAT-TAAAAAT
1 ATTAAA-AATATAAAAAT
13027325 ATTAAAAATATATAAAA-
1 ATTAAAAATATA-AAAAT
*
13027342 ATTAATAATA-AAAAAT
1 ATTAAAAATATAAAAAT
13027358 GTTAGAAACG
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
15 4 0.09
16 4 0.09
17 24 0.56
18 11 0.26
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.32
Consensus pattern (17 bp):
ATTAAAAATATAAAAAT
Found at i:13028821 original size:16 final size:15
Alignment explanation
Indices: 13028800--13028831 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
13028790 TTAGAAGTTG
13028800 GTTTTTTTTTTCTTTT
1 GTTTTTTTTTT-TTTT
13028816 GTTTTTTTTTTTTTT
1 GTTTTTTTTTTTTTT
13028831 G
1 G
13028832 CCATGATGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.00, C:0.03, G:0.09, T:0.88
Consensus pattern (15 bp):
GTTTTTTTTTTTTTT
Found at i:13028822 original size:15 final size:15
Alignment explanation
Indices: 13028802--13028831 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
13028792 AGAAGTTGGT
13028802 TTTTTTTTTCTTTTG
1 TTTTTTTTTCTTTTG
*
13028817 TTTTTTTTTTTTTTG
1 TTTTTTTTTCTTTTG
13028832 CCATGATGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.03, G:0.07, T:0.90
Consensus pattern (15 bp):
TTTTTTTTTCTTTTG
Found at i:13029743 original size:8 final size:9
Alignment explanation
Indices: 13029722--13029746 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
13029712 AAATGAAAAG
13029722 AAAAATATC
1 AAAAATATC
13029731 AAAAATATC
1 AAAAATATC
13029740 AAAAATA
1 AAAAATA
13029747 ATTTTTGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (9 bp):
AAAAATATC
Found at i:13036994 original size:32 final size:33
Alignment explanation
Indices: 13036958--13037052 Score: 84
Period size: 32 Copynumber: 2.8 Consensus size: 33
13036948 GCACCCAAGT
* * *
13036958 TTTTAAGCCCAGATTATTTGGCACTTATAA-AA
1 TTTTAAACCCAGATTAATTGGCACTCATAAGAA
* * *
13036990 TTTTAATCCCAGTTTAACTGGCACTCATAAGAA
1 TTTTAAACCCAGATTAATTGGCACTCATAAGAA
* * *
13037023 TAATTTAAACCCAGGTTAGTTGGCATTCAT
1 T--TTTAAACCCAGATTAATTGGCACTCAT
13037053 GAAAAAATTT
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
32 25 0.50
33 3 0.06
35 22 0.44
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.36
Consensus pattern (33 bp):
TTTTAAACCCAGATTAATTGGCACTCATAAGAA
Found at i:13037047 original size:35 final size:34
Alignment explanation
Indices: 13036959--13037103 Score: 100
Period size: 35 Copynumber: 4.2 Consensus size: 34
13036949 CACCCAAGTT
* ** *
13036959 TTTAAGCCCAGATTATTTGGCACTTATAAAAT--
1 TTTAAGCCCAGGTTAGCTGGCACTCATAAAATAA
* * *
13036991 TTTAATCCCAGTTTAACTGGCACTCATAAGAATAA
1 TTTAAGCCCAGGTTAGCTGGCACTCATAA-AATAA
* * *
13037026 TTTAAACCCAGGTTAGTTGGCATTCATGAAAA-AA
1 TTTAAGCCCAGGTTAGCTGGCACTCAT-AAAATAA
** *
13037060 TTTTAAGTTCAGGTTAGCTGGCACTCGTGAGAAA-AA
1 -TTTAAGCCCAGGTTAGCTGGCACTCAT-A-AAATAA
13037096 TTTAAGCC
1 TTTAAGCC
13037104 TAATCTAGCT
Statistics
Matches: 89, Mismatches: 18, Indels: 9
0.77 0.16 0.08
Matches are distributed among these distances:
32 24 0.27
33 3 0.03
34 2 0.02
35 53 0.60
36 7 0.08
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (34 bp):
TTTAAGCCCAGGTTAGCTGGCACTCATAAAATAA
Found at i:13037605 original size:32 final size:31
Alignment explanation
Indices: 13037569--13037647 Score: 95
Period size: 32 Copynumber: 2.5 Consensus size: 31
13037559 AAACCTAGTT
*
13037569 TAGCTGGCATCTAATGAAATCTAAGTCCAGTC
1 TAGCTGGCA-CTAATGAAATCTAAGCCCAGTC
* *
13037601 TAGCTGGCACTAAATGAAATTTAAGCCCAGTT
1 TAGCTGGCACT-AATGAAATCTAAGCCCAGTC
*
13037633 TAGCTGTCACCTAAT
1 TAGCTGGCA-CTAAT
13037648 AAAGTTTTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
31 2 0.05
32 37 0.90
33 2 0.05
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.29
Consensus pattern (31 bp):
TAGCTGGCACTAATGAAATCTAAGCCCAGTC
Found at i:13038413 original size:13 final size:12
Alignment explanation
Indices: 13038389--13038426 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
13038379 AATAAAAAAA
13038389 TTTTTCTATTTTT
1 TTTTTCT-TTTTT
*
13038402 TTGTTCTTTTTT
1 TTTTTCTTTTTT
13038414 TTTTT-TTTTTT
1 TTTTTCTTTTTT
13038425 TT
1 TT
13038427 CAATTTTCTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 8 0.35
12 9 0.39
13 6 0.26
ACGTcount: A:0.03, C:0.05, G:0.03, T:0.89
Consensus pattern (12 bp):
TTTTTCTTTTTT
Found at i:13041824 original size:3 final size:3
Alignment explanation
Indices: 13041816--13041845 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
13041806 TTTTATTTTT
13041816 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
13041846 TTATATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:13041855 original size:3 final size:3
Alignment explanation
Indices: 13041844--13041880 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
13041834 ATAATAATAA
13041844 TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
13041881 AATCATCAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:13054554 original size:3 final size:3
Alignment explanation
Indices: 13054541--13054584 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
13054531 ACTTTCATGT
13054541 TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
13054585 CTATATTTGT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:13055068 original size:3 final size:3
Alignment explanation
Indices: 13055038--13055105 Score: 88
Period size: 3 Copynumber: 23.3 Consensus size: 3
13055028 TAAATATTAA
* *
13055038 AAT AA- AAT AAT AA- AAG ATT AAT AGAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
13055082 AAT AAT AAT AAT AAT AAT AA- AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
13055106 TATATTTTAA
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
2 6 0.10
3 49 0.84
4 3 0.05
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:13055099 original size:21 final size:21
Alignment explanation
Indices: 13055030--13055105 Score: 88
Period size: 21 Copynumber: 3.8 Consensus size: 21
13055020 AGAATTATTA
*
13055030 AATATTAA-AATAA-AATAAT
1 AATAATAATAATAATAATAAT
* *
13055049 AA-AAGATTAATAGATAATAAT
1 AATAATAATAATA-ATAATAAT
13055070 AATAATAATAATAATAATAAT
1 AATAATAATAATAATAATAAT
13055091 AATAATAATAA-AATA
1 AATAATAATAATAATA
13055106 TATATTTTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
18 2 0.04
19 6 0.12
20 5 0.10
21 27 0.56
22 8 0.17
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (21 bp):
AATAATAATAATAATAATAAT
Found at i:13055487 original size:12 final size:12
Alignment explanation
Indices: 13055447--13055489 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
13055437 TGAAATTCTA
13055447 AAACCCTAGATG
1 AAACCCTAGATG
* *
13055459 AAACCTTAGCTTG
1 AAACCCTAG-ATG
*
13055472 AAACCCTAGGTG
1 AAACCCTAGATG
13055484 AAACCC
1 AAACCC
13055490 AAACTTTCCT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
12 16 0.62
13 10 0.38
ACGTcount: A:0.37, C:0.28, G:0.16, T:0.19
Consensus pattern (12 bp):
AAACCCTAGATG
Found at i:13055867 original size:11 final size:11
Alignment explanation
Indices: 13055842--13055875 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
13055832 AAAAAATATT
*
13055842 ATTTAATAATTA
1 ATTTAA-AATAA
13055854 ATTTAAAATAA
1 ATTTAAAATAA
13055865 ATTTAAAATAA
1 ATTTAAAATAA
13055876 TATTCTAGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 15 0.71
12 6 0.29
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
ATTTAAAATAA
Found at i:13058785 original size:4 final size:4
Alignment explanation
Indices: 13058768--13058807 Score: 62
Period size: 4 Copynumber: 10.0 Consensus size: 4
13058758 ATCATTTATG
* *
13058768 CATT CATT CGTT CATT CATT CATT CATT CATT CATC CATT
1 CATT CATT CATT CATT CATT CATT CATT CATT CATT CATT
13058808 TATGTATCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.23, C:0.28, G:0.03, T:0.47
Consensus pattern (4 bp):
CATT
Found at i:13060836 original size:21 final size:20
Alignment explanation
Indices: 13060810--13060850 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
13060800 CCCCATTGGG
* *
13060810 ATCAATTAGAAACAATTAAGA
1 ATCAATCAGAAA-AATCAAGA
13060831 ATCAATCAGAAAAATCAAGA
1 ATCAATCAGAAAAATCAAGA
13060851 GAGAGAGTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.59, C:0.12, G:0.10, T:0.20
Consensus pattern (20 bp):
ATCAATCAGAAAAATCAAGA
Found at i:13061088 original size:4 final size:4
Alignment explanation
Indices: 13061079--13061132 Score: 56
Period size: 4 Copynumber: 13.2 Consensus size: 4
13061069 CATAAGTGTC
* * *
13061079 TATT TATT TATT TATT TATTT TATT TATT TGA-C TATT TATG CATT TATT
1 TATT TATT TATT TATT TA-TT TATT TATT T-ATT TATT TATT TATT TATT
13061128 TATT T
1 TATT T
13061133 GTAAAGATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
3 1 0.02
4 35 0.85
5 5 0.12
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.69
Consensus pattern (4 bp):
TATT
Found at i:13061548 original size:19 final size:19
Alignment explanation
Indices: 13061510--13061548 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
13061500 ATTTTTAAGT
* *
13061510 AAAAATTAATTTTTAGAAA
1 AAAAAATAATTTTCAGAAA
*
13061529 AAAAAATAATTTTCATAAA
1 AAAAAATAATTTTCAGAAA
13061548 A
1 A
13061549 TCCTACCAAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (19 bp):
AAAAAATAATTTTCAGAAA
Found at i:13061575 original size:120 final size:121
Alignment explanation
Indices: 13061304--13061575 Score: 300
Period size: 121 Copynumber: 2.3 Consensus size: 121
13061294 AATAAAACAA
*** ** * *
13061304 AAAGCCTTACCAACATATCAAAAGGTAATTTGATTTTTAAAATAAGGTTTTACTAACATATTGTA
1 AAAGCCTTACCAACATATTGGAAGGTAATTTGATTTTTAAAATAAAATTTTACCAACATATTGAA
* * * * *
13061369 GAACTTTATTAATTTTTTATAAAAAATAAATTTCAAGAGAAAAAATAGTTTTCAAT
66 AAACCTTATTAATTTTTAATAAAAAATAAATTTCAAGAAAAAAAATAATTTTCAAT
* * *
13061425 AAAGCCTTACCAACATATTGGAAGGCAATTTGATTTTTAAGATAAAATTTTACCAATATATTGAA
1 AAAGCCTTACCAACATATTGGAAGGTAATTTGATTTTTAAAATAAAATTTTACCAACATATTGAA
* * **
13061490 AAACCTTA-TGATTTTTAAGT-AAAAATTAATTTTTAGAAAAAAAAATAATTTTC-AT
66 AAACCTTATTAATTTTTAA-TAAAAAATAAATTTCAAG-AAAAAAAATAATTTTCAAT
* *
13061545 AAAATCC-TACCAACATATTGGAAGATAATTT
1 -AAAGCCTTACCAACATATTGGAAGGTAATTT
13061576 CTTACAGAAA
Statistics
Matches: 126, Mismatches: 22, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
120 45 0.36
121 81 0.64
ACGTcount: A:0.45, C:0.10, G:0.09, T:0.36
Consensus pattern (121 bp):
AAAGCCTTACCAACATATTGGAAGGTAATTTGATTTTTAAAATAAAATTTTACCAACATATTGAA
AAACCTTATTAATTTTTAATAAAAAATAAATTTCAAGAAAAAAAATAATTTTCAAT
Found at i:13062367 original size:33 final size:34
Alignment explanation
Indices: 13062314--13062379 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 34
13062304 TGTAAGTTAC
*
13062314 AATTAAGAAATTTTTTTTTGAATGTTTTGTCTAA
1 AATTAAGAAATTTTTCTTTGAATGTTTTGTCTAA
13062348 AATTAAG-AATTTTTCTTTGAATGTTTTGTCTA
1 AATTAAGAAATTTTTCTTTGAATGTTTTGTCTA
13062380 TTTATAATTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 24 0.77
34 7 0.23
ACGTcount: A:0.30, C:0.05, G:0.12, T:0.53
Consensus pattern (34 bp):
AATTAAGAAATTTTTCTTTGAATGTTTTGTCTAA
Found at i:13063094 original size:271 final size:271
Alignment explanation
Indices: 13062611--13063144 Score: 1025
Period size: 271 Copynumber: 2.0 Consensus size: 271
13062601 TGTAAGAAAC
*
13062611 AATTTGGGAACCTTTAGATTTAACTTAAACCACATGTGGTTAACCCTAAGAAACCAATCCTAGGT
1 AATTTGGGAACCTTTAGATTTAACTTAAACCACATGTGGTTAACCCTAAGAAACCAATCCTAGGC
13062676 TAGAGCCATGTCCACTCATTGTTAGAATGTAACCCAAGTTAGAACACATGAAAGAACTTTGGTAG
66 TAGAGCCATGTCCACTCATTGTTAGAATGTAACCCAAGTTAGAACACATGAAAGAACTTTGGTAG
13062741 TGTCATTTGCATGAGTTTTGTGATAAAGTTAAAAGAGTTTGAGTTTTATTCACTATTTTATGTGT
131 TGTCATTTGCATGAGTTTTGTGATAAAGTTAAAAGAGTTTGAGTTTTATTCACTATTTTATGTGT
13062806 TGTTATGCAACATTCATACATTTATTCATCCATGCATCATTGAATTTTTATGTATCTAGCATTTA
196 TGTTATGCAACATTCATACATTTATTCATCCATGCATCATTGAATTTTTATGTATCTAGCATTTA
13062871 ATGCATGTAAG
261 ATGCATGTAAG
13062882 AATTTGGGAACCTTTAGATTTAACTTAAACCACATGTGGTTAACCCTAAGAAACCAATCCTAGGC
1 AATTTGGGAACCTTTAGATTTAACTTAAACCACATGTGGTTAACCCTAAGAAACCAATCCTAGGC
*
13062947 TAGAGCCATGTCCAC-CTATTGTTAGAATGTAACCCAGGTTAGAACACATGAAAGAACTTTGGTA
66 TAGAGCCATGTCCACTC-ATTGTTAGAATGTAACCCAAGTTAGAACACATGAAAGAACTTTGGTA
13063011 GTGTCATTTGCATGAGTTTTGTGATAAAGTTAAAAGAGTTTGAGTTTTATTCACTATTTTATGTG
130 GTGTCATTTGCATGAGTTTTGTGATAAAGTTAAAAGAGTTTGAGTTTTATTCACTATTTTATGTG
*
13063076 TTGTTATGCAGCATTCATACATTTATTCATCCATGCATCATTGAATTTTTATGTATCTAGCATTT
195 TTGTTATGCAACATTCATACATTTATTCATCCATGCATCATTGAATTTTTATGTATCTAGCATTT
13063141 AATG
260 AATG
13063145 TATGCATTCA
Statistics
Matches: 259, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
270 1 0.00
271 258 1.00
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (271 bp):
AATTTGGGAACCTTTAGATTTAACTTAAACCACATGTGGTTAACCCTAAGAAACCAATCCTAGGC
TAGAGCCATGTCCACTCATTGTTAGAATGTAACCCAAGTTAGAACACATGAAAGAACTTTGGTAG
TGTCATTTGCATGAGTTTTGTGATAAAGTTAAAAGAGTTTGAGTTTTATTCACTATTTTATGTGT
TGTTATGCAACATTCATACATTTATTCATCCATGCATCATTGAATTTTTATGTATCTAGCATTTA
ATGCATGTAAG
Found at i:13063236 original size:61 final size:61
Alignment explanation
Indices: 13063159--13063293 Score: 182
Period size: 61 Copynumber: 2.2 Consensus size: 61
13063149 CATTCATCAG
* * *
13063159 TCATGCATCATTATGAGGCAAACATTAACTTATATATCCATCAATGCAGTCATTTGTTC-AT
1 TCATGCATCATTATGAGACAAACATTAACTCATACATCCATCAATGCAGTCATTTG-TCAAT
* ** *
13063220 TCATGCATCATTATGAGACAAACATTAACTCATGCATCCATTTATGTAGTCATTTGTCAAT
1 TCATGCATCATTATGAGACAAACATTAACTCATACATCCATCAATGCAGTCATTTGTCAAT
*
13063281 CCATGCATCATTA
1 TCATGCATCATTA
13063294 AATTGTTATG
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
60 2 0.03
61 63 0.97
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.36
Consensus pattern (61 bp):
TCATGCATCATTATGAGACAAACATTAACTCATACATCCATCAATGCAGTCATTTGTCAAT
Found at i:13066056 original size:11 final size:11
Alignment explanation
Indices: 13066040--13066087 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
13066030 TGAGATTTGA
13066040 TTTTTGTTTCT
1 TTTTTGTTTCT
13066051 TTTTTGTTTCT
1 TTTTTGTTTCT
*
13066062 TTTTTATCTT-T
1 TTTTTGT-TTCT
*
13066073 TTTTT-TATCT
1 TTTTTGTTTCT
13066083 TTTTT
1 TTTTT
13066088 ATTTTTAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
9 1 0.03
10 7 0.21
11 23 0.70
12 2 0.06
ACGTcount: A:0.04, C:0.08, G:0.04, T:0.83
Consensus pattern (11 bp):
TTTTTGTTTCT
Found at i:13066076 original size:12 final size:12
Alignment explanation
Indices: 13066061--13066087 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
13066051 TTTTTGTTTC
13066061 TTTTTTATCTTT
1 TTTTTTATCTTT
13066073 TTTTTTATCTTT
1 TTTTTTATCTTT
13066085 TTT
1 TTT
13066088 ATTTTTAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTTATCTTT
Found at i:13066087 original size:21 final size:20
Alignment explanation
Indices: 13066048--13066093 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
13066038 GATTTTTGTT
13066048 TCTTTTTTGTTTCTTTTTTA
1 TCTTTTTTGTTTCTTTTTTA
*
13066068 TCTTTTTTTTTATCTTTTTTA
1 TCTTTTTTGTT-TCTTTTTTA
13066089 T-TTTT
1 TCTTTT
13066094 AATCCACAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.07, C:0.09, G:0.02, T:0.83
Consensus pattern (20 bp):
TCTTTTTTGTTTCTTTTTTA
Found at i:13068205 original size:10 final size:9
Alignment explanation
Indices: 13068182--13068206 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
13068172 AATTGATCTT
13068182 GTTTTTGTA
1 GTTTTTGTA
13068191 GTTTTTGTA
1 GTTTTTGTA
13068200 GTTTTTG
1 GTTTTTG
13068207 ATGCGGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (9 bp):
GTTTTTGTA
Found at i:13072949 original size:22 final size:22
Alignment explanation
Indices: 13072924--13072967 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
13072914 CTTAAGTAGA
**
13072924 CATAATTGTTTTATATATACAT
1 CATAATTAATTTATATATACAT
*
13072946 CATAGTTAATTTATATATACAT
1 CATAATTAATTTATATATACAT
13072968 TTATTATTGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.39, C:0.09, G:0.05, T:0.48
Consensus pattern (22 bp):
CATAATTAATTTATATATACAT
Found at i:13074004 original size:26 final size:26
Alignment explanation
Indices: 13073951--13074005 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
13073941 ACGTCACTTT
* *
13073951 TTTTTTCTATTTTTTAGCTTTTCAAC
1 TTTTTTATATTTTTGAGCTTTTCAAC
*
13073977 TTTTTTATATTTTTGATGGTTTTC-AC
1 TTTTTTATATTTTTGA-GCTTTTCAAC
13074003 TTT
1 TTT
13074006 AATTTAGATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.15, C:0.11, G:0.07, T:0.67
Consensus pattern (26 bp):
TTTTTTATATTTTTGAGCTTTTCAAC
Found at i:13076729 original size:10 final size:10
Alignment explanation
Indices: 13076714--13076750 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
13076704 GTAGATAATC
13076714 AAAAAAAGAA
1 AAAAAAAGAA
13076724 AAAAAAAGAA
1 AAAAAAAGAA
* *
13076734 AAAAAGAGCA
1 AAAAAAAGAA
13076744 AAAAAAA
1 AAAAAAA
13076751 TGAATGATGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.86, C:0.03, G:0.11, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:13076737 original size:18 final size:19
Alignment explanation
Indices: 13076714--13076750 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
13076704 GTAGATAATC
13076714 AAAAAAAGA-AAAAAAAAG
1 AAAAAAAGACAAAAAAAAG
13076732 AAAAAAAGAGCAAAAAAAA
1 AAAAAAAGA-CAAAAAAAA
13076751 TGAATGATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
20 8 0.47
ACGTcount: A:0.86, C:0.03, G:0.11, T:0.00
Consensus pattern (19 bp):
AAAAAAAGACAAAAAAAAG
Found at i:13080375 original size:17 final size:16
Alignment explanation
Indices: 13080347--13080398 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 16
13080337 ACAATTAAAT
13080347 AATAAAAAAAAACCAA
1 AATAAAAAAAAACCAA
* *
13080363 AATCAAAACAAAATCAA
1 AAT-AAAAAAAAACCAA
*
13080380 AATAAAAAATAAAACAA
1 AATAAAAAA-AAACCAA
13080397 AA
1 AA
13080399 AAAGCAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
16 8 0.27
17 22 0.73
ACGTcount: A:0.79, C:0.12, G:0.00, T:0.10
Consensus pattern (16 bp):
AATAAAAAAAAACCAA
Found at i:13080393 original size:12 final size:13
Alignment explanation
Indices: 13080361--13080400 Score: 50
Period size: 11 Copynumber: 3.3 Consensus size: 13
13080351 AAAAAAAACC
13080361 AAAATCAAAAC--
1 AAAATCAAAACAA
*
13080372 AAAATCAAAATAA
1 AAAATCAAAACAA
13080385 AAAAT-AAAACAA
1 AAAATCAAAACAA
13080397 AAAA
1 AAAA
13080401 AGCAAAAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 10 0.40
12 10 0.40
13 5 0.20
ACGTcount: A:0.80, C:0.10, G:0.00, T:0.10
Consensus pattern (13 bp):
AAAATCAAAACAA
Found at i:13086891 original size:6 final size:6
Alignment explanation
Indices: 13086880--13086919 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
13086870 CCAAAATAAC
* *
13086880 ATTAAA ATTAAA ATTAAA ATTAAAA ATCAAA ATTGAA ATT
1 ATTAAA ATTAAA ATTAAA ATT-AAA ATTAAA ATTAAA ATT
13086920 TTTGGGTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
6 25 0.83
7 5 0.17
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (6 bp):
ATTAAA
Found at i:13086911 original size:19 final size:18
Alignment explanation
Indices: 13086871--13086919 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
13086861 ATTTTTTGAC
*
13086871 CAAAA-TAACATTAAAAT
1 CAAAATTAAAATTAAAAT
*
13086888 TAAAATTAAAATTAAAAAT
1 CAAAATTAAAATT-AAAAT
*
13086907 CAAAATTGAAATT
1 CAAAATTAAAATT
13086920 TTTGGGTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 4 0.15
18 6 0.23
19 16 0.62
ACGTcount: A:0.63, C:0.06, G:0.02, T:0.29
Consensus pattern (18 bp):
CAAAATTAAAATTAAAAT
Found at i:13097634 original size:141 final size:141
Alignment explanation
Indices: 13097374--13097645 Score: 329
Period size: 141 Copynumber: 1.9 Consensus size: 141
13097364 CGATAAGGCA
* *
13097374 AAATTATCAAAATGCCCTTTAAGGGTATTTTCATAATTTGACTTTCACAAAGTTGGATTTTTGTG
1 AAATTATCAAAATGCCATTTAAGGGTATTTTCATAATTTGACTTTCACAAAGTTAGATTTTTGTG
* * * * * * *
13097439 AAAACTTTCATATCGTGATTTTATAATATTTGATGTTTTTTGATACATTGAAAACTTTGATCGCA
66 AAAACTCTCAGATCATGATTTAATAATATTTGATGATTTTTAATACATTAAAAACTTTGATCGCA
13097504 TTTTGGGTGTG
131 TTTTGGGTGTG
* * *
13097515 AAATTA-CTAAAATGCCATTT-AGAGGTATTTTCATACTTTGACCTTT-TC-GAGCTTAGATTTT
1 AAATTATC-AAAATGCCATTTAAG-GGTATTTTCATAATTTGA-CTTTCACAAAG-TTAGATTTT
* *
13097576 TGTGAAAAGCTCT-AGATCATGATTTAATATTATTTGATGATTTTTAATGCATTAAAAACTTTGA
62 TGTGAAAA-CTCTCAGATCATGATTTAATAATATTTGATGATTTTTAATACATTAAAAACTTTGA
*
13097640 TTGCAT
126 TCGCAT
13097646 CTCAAGAGGT
Statistics
Matches: 111, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
140 5 0.05
141 99 0.89
142 7 0.06
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.43
Consensus pattern (141 bp):
AAATTATCAAAATGCCATTTAAGGGTATTTTCATAATTTGACTTTCACAAAGTTAGATTTTTGTG
AAAACTCTCAGATCATGATTTAATAATATTTGATGATTTTTAATACATTAAAAACTTTGATCGCA
TTTTGGGTGTG
Found at i:13097903 original size:143 final size:141
Alignment explanation
Indices: 13097591--13097916 Score: 343
Period size: 141 Copynumber: 2.3 Consensus size: 141
13097581 AAAGCTCTAG
** * * * * * *
13097591 ATCATGATTTAATATTATTTGATGATTTTTAATGCATTAAAAACTTTGATTGCATCTCAAGAGGT
1 ATCATGATTTAATATTATTTGATGATTTTTGGTACATTAAAAACCTCGATCGCACCTCAAAAGGT
* * * * * * **
13097656 ATGAAATTACCAAACTATCTTTTAAGGTTTTTTTGTAATTTTACCTTTCGAGGTGATTTTTCACG
66 ATGAAATTACCAAAATACCTTTTAAGGTATTTTTGTAATTTAACCTTTCGAAGTAATTTACCACG
13097721 AAAACTTTCAA
131 AAAACTTTCAA
* * *
13097732 ATCATGATTTTATAATATTTGATTATTTTTGGTACATTAAAAACCTCGATCGCACCTCAAAAGGT
1 ATCATGATTTAATATTATTTGATGATTTTTGGTACATTAAAAACCTCGATCGCACCTCAAAAGGT
* *
13097797 -TGAAATTACCAAAATGCCCTTTTAAGGGTATTTTTGTAATTTAATCTTTTC-ATAGTCAATTTA
66 ATGAAATTACCAAAAT-ACCTTTTAA-GGTATTTTTGTAATTTAA-CCTTTCGA-AGT-AATTTA
*
13097860 CCAC-AAAACTTTCAT
126 CCACGAAAACTTTCAA
* * * * *
13097875 ATCATAATTTCATATTATTTGAGGATTTTAGGTACTTTAAAA
1 ATCATGATTTAATATTATTTGATGATTTTTGGTACATTAAAA
13097917 TCATAAAAAT
Statistics
Matches: 151, Mismatches: 29, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
140 14 0.09
141 61 0.40
142 17 0.11
143 52 0.34
144 7 0.05
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.42
Consensus pattern (141 bp):
ATCATGATTTAATATTATTTGATGATTTTTGGTACATTAAAAACCTCGATCGCACCTCAAAAGGT
ATGAAATTACCAAAATACCTTTTAAGGTATTTTTGTAATTTAACCTTTCGAAGTAATTTACCACG
AAAACTTTCAA
Found at i:13099214 original size:38 final size:37
Alignment explanation
Indices: 13099143--13099355 Score: 122
Period size: 38 Copynumber: 5.9 Consensus size: 37
13099133 AAACAACCTT
* * * * **
13099143 CCAAACCTTAAACCACCCTGAAATCCTAGACCACCTT
1 CCAAACCCTAAACCACCATGAAACCCTAAACCACCCA
** * *
13099180 TTAAACTCTAAACTACCTATGAAACCCTAAACCACCCA
1 CCAAACCCTAAACCACC-ATGAAACCCTAAACCACCCA
* **
13099218 CCAAACCCTAAACCACCATGAAACCCCAAACCATCTTA
1 CCAAACCCTAAACCACCATGAAACCCTAAACCA-CCCA
* **
13099256 --AAACCTTAAACCACCAT---A--C-AAACC-CTAA
1 CCAAACCCTAAACCACCATGAAACCCTAAACCACCCA
* *
13099284 CCAAACCCTAAACAACCATCCAAACCCTAAACCA-CCA
1 CCAAACCCTAAACCACCAT-GAAACCCTAAACCACCCA
* * *
13099321 CCCAAACCTTAAACCACCATCCAAACCCTCAACCA
1 -CCAAACCCTAAACCACCAT-GAAACCCTAAACCA
13099356 TCATCTAAAC
Statistics
Matches: 137, Mismatches: 26, Indels: 25
0.73 0.14 0.13
Matches are distributed among these distances:
28 3 0.02
30 20 0.15
31 1 0.01
33 1 0.01
34 1 0.01
36 17 0.12
37 33 0.24
38 61 0.45
ACGTcount: A:0.42, C:0.41, G:0.02, T:0.15
Consensus pattern (37 bp):
CCAAACCCTAAACCACCATGAAACCCTAAACCACCCA
Found at i:13099223 original size:19 final size:19
Alignment explanation
Indices: 13099201--13099370 Score: 137
Period size: 19 Copynumber: 9.5 Consensus size: 19
13099191 ACTACCTATG
13099201 AAACCCTAAACCACCCA-CC
1 AAACCCTAAACCA-CCATCC
*
13099220 AAACCCTAAACCACCAT-G
1 AAACCCTAAACCACCATCC
* * **
13099238 AAACCCCAAACCATC-TTA
1 AAACCCTAAACCACCATCC
* *
13099256 AAACCTTAAACCACCATAC
1 AAACCCTAAACCACCATCC
13099275 AAACCCT-----A--A-CC
1 AAACCCTAAACCACCATCC
*
13099286 AAACCCTAAACAACCATCC
1 AAACCCTAAACCACCATCC
*
13099305 AAACCCTAAACCACCACCC
1 AAACCCTAAACCACCATCC
*
13099324 AAACCTTAAACCACCATCC
1 AAACCCTAAACCACCATCC
* * *
13099343 AAACCCTCAACCATCATCT
1 AAACCCTAAACCACCATCC
13099362 AAACCCTAA
1 AAACCCTAA
13099371 CTTTAAACCC
Statistics
Matches: 120, Mismatches: 20, Indels: 22
0.74 0.12 0.14
Matches are distributed among these distances:
11 8 0.07
12 1 0.01
14 1 0.01
16 1 0.01
17 1 0.01
18 29 0.24
19 79 0.66
ACGTcount: A:0.44, C:0.43, G:0.01, T:0.12
Consensus pattern (19 bp):
AAACCCTAAACCACCATCC
Found at i:13099290 original size:30 final size:30
Alignment explanation
Indices: 13099256--13099313 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
13099246 AACCATCTTA
* *
13099256 AAACCTTAAACCACCATACAAACCCTAACC
1 AAACCCTAAACAACCATACAAACCCTAACC
*
13099286 AAACCCTAAACAACCATCCAAACCCTAA
1 AAACCCTAAACAACCATACAAACCCTAA
13099314 ACCACCACCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.48, C:0.40, G:0.00, T:0.12
Consensus pattern (30 bp):
AAACCCTAAACAACCATACAAACCCTAACC
Found at i:13099945 original size:28 final size:27
Alignment explanation
Indices: 13099895--13099951 Score: 69
Period size: 28 Copynumber: 2.1 Consensus size: 27
13099885 CTTTGGATGC
* **
13099895 AAAAATAAATTGTTTTGTTTTTACAAA
1 AAAAATAAAATGTTTTGCCTTTACAAA
*
13099922 AAAAATAAAAATGTTTTGCCTTTAGAAA
1 AAAAAT-AAAATGTTTTGCCTTTACAAA
13099950 AA
1 AA
13099952 GATTTGTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 6 0.24
28 19 0.76
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.37
Consensus pattern (27 bp):
AAAAATAAAATGTTTTGCCTTTACAAA
Found at i:13106042 original size:22 final size:22
Alignment explanation
Indices: 13106017--13106092 Score: 61
Period size: 22 Copynumber: 3.6 Consensus size: 22
13106007 CAAATCAATT
13106017 TAGAATATTATTGGAATATTAC
1 TAGAATATTATTGGAATATTAC
* *
13106039 TAGAATAATATT---ATCAAT-C
1 TAGAATATTATTGGAAT-ATTAC
***
13106058 TAGAATATTACCAGAATATTAC
1 TAGAATATTATTGGAATATTAC
*
13106080 TATAATATTATTG
1 TAGAATATTATTG
13106093 ACAGTTGGCA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
19 12 0.31
20 2 0.05
21 2 0.05
22 23 0.59
ACGTcount: A:0.43, C:0.08, G:0.09, T:0.39
Consensus pattern (22 bp):
TAGAATATTATTGGAATATTAC
Found at i:13106044 original size:11 final size:11
Alignment explanation
Indices: 13106017--13106089 Score: 53
Period size: 11 Copynumber: 6.9 Consensus size: 11
13106007 CAAATCAATT
*
13106017 TAGAATATTAT
1 TAGAATATTAC
*
13106028 TGGAATATTAC
1 TAGAATATTAC
* *
13106039 TAGAATAATAT
1 TAGAATATTAC
**
13106050 TATCA-A-T-C
1 TAGAATATTAC
13106058 TAGAATATTAC
1 TAGAATATTAC
*
13106069 CAGAATATTAC
1 TAGAATATTAC
*
13106080 TATAATATTA
1 TAGAATATTA
13106090 TTGACAGTTG
Statistics
Matches: 46, Mismatches: 13, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
8 3 0.07
9 2 0.04
10 2 0.04
11 39 0.85
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.38
Consensus pattern (11 bp):
TAGAATATTAC
Found at i:13106056 original size:41 final size:41
Alignment explanation
Indices: 13106010--13106091 Score: 110
Period size: 41 Copynumber: 2.0 Consensus size: 41
13106000 TTAATATCAA
* ***
13106010 ATCAATTTAGAATATTATTGGAATATTACTAGAATAATATT
1 ATCAATCTAGAATATTACCAGAATATTACTAGAATAATATT
* *
13106051 ATCAATCTAGAATATTACCAGAATATTACTATAATATTATT
1 ATCAATCTAGAATATTACCAGAATATTACTAGAATAATATT
13106092 GACAGTTGGC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (41 bp):
ATCAATCTAGAATATTACCAGAATATTACTAGAATAATATT
Found at i:13106843 original size:2 final size:2
Alignment explanation
Indices: 13106838--13106865 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
13106828 TATATATATA
13106838 TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG
13106866 AACTAGAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:13107481 original size:31 final size:30
Alignment explanation
Indices: 13107437--13107494 Score: 89
Period size: 31 Copynumber: 1.9 Consensus size: 30
13107427 TTTTTTTAAA
*
13107437 ATTTACTTATTAATAAAATGATATCATCTT
1 ATTTACTTATTAATAAAATAATATCATCTT
*
13107467 ATTTACTTTATTAATAAGATAATATCAT
1 ATTTAC-TTATTAATAAAATAATATCAT
13107495 TCAATTCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 6 0.24
31 19 0.76
ACGTcount: A:0.41, C:0.09, G:0.03, T:0.47
Consensus pattern (30 bp):
ATTTACTTATTAATAAAATAATATCATCTT
Found at i:13111239 original size:2 final size:2
Alignment explanation
Indices: 13111232--13111266 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
13111222 GGACTTGTAA
13111232 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13111267 CACACAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:13112494 original size:21 final size:22
Alignment explanation
Indices: 13112470--13112516 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
13112460 ATATGTATTT
*
13112470 GATAATA-GATTATGAGTGTTG
1 GATAATATGACTATGAGTGTTG
13112491 GATAATATTGACTATGAGTGTTG
1 GATAATA-TGACTATGAGTGTTG
13112514 GAT
1 GAT
13112517 TAGGTTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 7 0.30
23 16 0.70
ACGTcount: A:0.32, C:0.02, G:0.28, T:0.38
Consensus pattern (22 bp):
GATAATATGACTATGAGTGTTG
Found at i:13114435 original size:8 final size:8
Alignment explanation
Indices: 13114422--13114457 Score: 63
Period size: 8 Copynumber: 4.5 Consensus size: 8
13114412 TATAATTAAG
13114422 TTTTGTTA
1 TTTTGTTA
13114430 TTTTGTTA
1 TTTTGTTA
13114438 TTTTGTTA
1 TTTTGTTA
*
13114446 TTTTATTA
1 TTTTGTTA
13114454 TTTT
1 TTTT
13114458 CAAATTTCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.14, C:0.00, G:0.08, T:0.78
Consensus pattern (8 bp):
TTTTGTTA
Found at i:13116526 original size:18 final size:20
Alignment explanation
Indices: 13116505--13116546 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
13116495 AAATTATGTT
*
13116505 AAAAGTTCA-ATT-TTTTAA
1 AAAAATTCAGATTATTTTAA
13116523 AAAAATTCAGTATTATTTTAA
1 AAAAATTCAG-ATTATTTTAA
13116544 AAA
1 AAA
13116547 CAAAAAATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 8 0.40
20 3 0.15
21 9 0.45
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.40
Consensus pattern (20 bp):
AAAAATTCAGATTATTTTAA
Found at i:13116694 original size:17 final size:17
Alignment explanation
Indices: 13116674--13116706 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
13116664 ATATTTTATA
13116674 AAATAATAAATGAAAAT
1 AAATAATAAATGAAAAT
13116691 AAATAATAAATGAAAA
1 AAATAATAAATGAAAA
13116707 AACATATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.21
Consensus pattern (17 bp):
AAATAATAAATGAAAAT
Found at i:13117249 original size:19 final size:21
Alignment explanation
Indices: 13117217--13117258 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
13117207 TTCAAATTAG
13117217 ATTTTTTGAATAGAA-AATAA
1 ATTTTTTGAATAGAATAATAA
*
13117237 ATTTTTT-AGTAGAATAATAA
1 ATTTTTTGAATAGAATAATAA
13117257 AT
1 AT
13117259 GCATTTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.43
Consensus pattern (21 bp):
ATTTTTTGAATAGAATAATAA
Found at i:13118252 original size:47 final size:46
Alignment explanation
Indices: 13118194--13118420 Score: 176
Period size: 47 Copynumber: 5.0 Consensus size: 46
13118184 AAACTTCACA
* *
13118194 ATTTGAATTAAAATTTGAAGATTCACATTTGAAAGTTAAACATTCGC
1 ATTTGAATTAAAATTTAAAGATTCACATTTGAAA-TTAAAGATTCGC
* ** ** *
13118241 ATTTTAATTAAAATTTAAA-ATTTCACATTTCTAATTCGAGATTCAC
1 ATTTGAATTAAAATTTAAAGA-TTCACATTTGAAATTAAAGATTCGC
* * * * * *
13118287 ATTT-AATCAAACTTCAAAGATTCACATATGAAATTTATGATTCGC
1 ATTTGAATTAAAATTTAAAGATTCACATTTGAAATTAAAGATTCGC
* * **
13118332 ATTTGAATTAAAA-TTAAGAGATTCACATATGAAACTCAAAGATTCTT
1 ATTTGAATTAAAATTTAA-AGATTCACATTTGAAA-TTAAAGATTCGC
* * ** *
13118379 ATTGGAATTAAAATATGGAGATTCTCATTTG-AATTAAA-ATTC
1 ATTTGAATTAAAATTTAAAGATTCACATTTGAAATTAAAGATTC
13118421 AGAGATTCAC
Statistics
Matches: 141, Mismatches: 33, Indels: 15
0.75 0.17 0.08
Matches are distributed among these distances:
44 4 0.03
45 40 0.28
46 38 0.27
47 58 0.41
48 1 0.01
ACGTcount: A:0.41, C:0.11, G:0.10, T:0.37
Consensus pattern (46 bp):
ATTTGAATTAAAATTTAAAGATTCACATTTGAAATTAAAGATTCGC
Found at i:13118355 original size:26 final size:26
Alignment explanation
Indices: 13118325--13118428 Score: 76
Period size: 26 Copynumber: 4.2 Consensus size: 26
13118315 TGAAATTTAT
*
13118325 GATTCGCATTTGAATTAAAATTAAGA
1 GATTCTCATTTGAATTAAAATTAAGA
* * * *
13118351 GATTCACA--T--ATGAAACTCAA-A
1 GATTCTCATTTGAATTAAAATTAAGA
* * *
13118372 GATTCTTATTGGAATTAAAA-TATGGA
1 GATTCTCATTTGAATTAAAATTA-AGA
*
13118398 GATTCTCATTTGAATTAAAATTCAGA
1 GATTCTCATTTGAATTAAAATTAAGA
13118424 GATTC
1 GATTC
13118429 ACATATGGAA
Statistics
Matches: 56, Mismatches: 15, Indels: 14
0.66 0.18 0.16
Matches are distributed among these distances:
21 7 0.12
22 8 0.14
24 2 0.04
25 5 0.09
26 33 0.59
27 1 0.02
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (26 bp):
GATTCTCATTTGAATTAAAATTAAGA
Found at i:13130312 original size:63 final size:62
Alignment explanation
Indices: 13130245--13130568 Score: 260
Period size: 63 Copynumber: 5.2 Consensus size: 62
13130235 TAATAATTTT
*
13130245 CTATTAAAATTTGTTTGGGATTATTAAAGGTGTCTTATAGCAAAAAATGCCTTCAATATTCCA
1 CTATTAAAATTT-TTTGGGATTATTAAAGGCGTCTTATAGCAAAAAATGCCTTCAATATTCCA
* * * * * * * * *
13130308 CTATTAAAAATTGTTTGGGACTATTAAAAGCGTTTTGTAGCAGAAAATACCTTTAACATTCCA
1 CTATT-AAAATTTTTTGGGATTATTAAAGGCGTCTTATAGCAAAAAATGCCTTCAATATTCCA
* *** * * * ** * ** **
13130371 CTACTAAAATTTAAAGGG-TTATTGAAGGTGTTTTGGAG-AATAAACACCTTCAATAATT-TT
1 CTATTAAAATTTTTTGGGATTATTAAAGGCGTCTTATAGCAAAAAATGCCTTCAAT-ATTCCA
* ** * * * *
13130431 CTATTAAAAATTATTAAGGATTATTAAAGGCATCTTATAGCAGAAAATGCTTTCAATATTTCA
1 CTATT-AAAATTTTTTGGGATTATTAAAGGCGTCTTATAGCAAAAAATGCCTTCAATATTCCA
* * *
13130494 TTTTTAAATATTTTTTGGGATTATTAAAGGCATCTTATAGC-AAAAATGCCTTCAATATTCCA
1 CTATTAAA-ATTTTTTGGGATTATTAAAGGCGTCTTATAGCAAAAAATGCCTTCAATATTCCA
*
13130556 CTACTAAAATTTT
1 CTATTAAAATTTT
13130569 AAGGAGTTAT
Statistics
Matches: 198, Mismatches: 56, Indels: 16
0.73 0.21 0.06
Matches are distributed among these distances:
60 15 0.08
61 32 0.16
62 52 0.26
63 93 0.47
64 6 0.03
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.38
Consensus pattern (62 bp):
CTATTAAAATTTTTTGGGATTATTAAAGGCGTCTTATAGCAAAAAATGCCTTCAATATTCCA
Found at i:13130469 original size:186 final size:186
Alignment explanation
Indices: 13130231--13130579 Score: 475
Period size: 186 Copynumber: 1.9 Consensus size: 186
13130221 AAAATAAATG
* * * ** **
13130231 CCTTTAATAATTTTCTATTAAAATTTGTTTGGGATTATTAAAGGTGTCTTATAGCAAAAAATGCC
1 CCTTCAATAATTTTCTATTAAAAATTATTAAGGATTATTAAAGGCATCTTATAGCAAAAAATGCC
* * *
13130296 TTCAATATTCCACTATTAAAAATTGTTTGGGACTATTAAAAGCGTTTTGTAGCAGAAAATACCTT
66 TTCAATATTCCACTATTAAAAATTGTTTGGGACTATTAAAAGCATCTTATAGCA-AAAATACCTT
*
13130361 TAACATTCCACTACTAAAATTTAAAGG-GTTATTGAAGGTGTTTTGGAGAATAAACA
130 CAACATTCCACTACTAAAATTTAAAGGAGTTATTGAAGGTGTTTTGGAGAATAAACA
* *
13130417 CCTTCAATAATTTTCTATTAAAAATTATTAAGGATTATTAAAGGCATCTTATAGCAGAAAATGCT
1 CCTTCAATAATTTTCTATTAAAAATTATTAAGGATTATTAAAGGCATCTTATAGCAAAAAATGCC
* * * * * * * *
13130482 TTCAATATTTCATTTTTAAATATTTTTTGGGATTATTAAAGGCATCTTATAGCAAAAATGCCTTC
66 TTCAATATTCCACTATTAAAAATTGTTTGGGACTATTAAAAGCATCTTATAGCAAAAATACCTTC
* *
13130547 AATATTCCACTACTAAAATTTTAAGGAGTTATT
131 AACATTCCACTACTAAAATTTAAAGGAGTTATT
13130580 AAAGTCATTT
Statistics
Matches: 139, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
185 33 0.24
186 106 0.76
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.39
Consensus pattern (186 bp):
CCTTCAATAATTTTCTATTAAAAATTATTAAGGATTATTAAAGGCATCTTATAGCAAAAAATGCC
TTCAATATTCCACTATTAAAAATTGTTTGGGACTATTAAAAGCATCTTATAGCAAAAATACCTTC
AACATTCCACTACTAAAATTTAAAGGAGTTATTGAAGGTGTTTTGGAGAATAAACA
Found at i:13131052 original size:63 final size:63
Alignment explanation
Indices: 13130899--13131052 Score: 156
Period size: 63 Copynumber: 2.4 Consensus size: 63
13130889 TCTTGAGAAT
* *
13130899 AAACACCTTCAATAATTTC-TT-CTTAAAAATTGTTTGAGATTATTAAAAGTGTCTTGTAGTAAA
1 AAACACCTTCAAT-ATTTCATTAC-TAAAAATTGTTTGAGATAATTAAAAGTGTCTTGCAGTAAA
** * * *
13130962 AAATGCCTTCAATATTTCACTATTAAAAATTGTTTTG-GATAATTAAAGACGT-T-TTGCAGTAG
1 AAACACCTTCAATATTTCATTACTAAAAATTG-TTTGAGATAATTAAA-A-GTGTCTTGCAGTAA
13131024 A
63 A
*
13131025 AAACACCTTCAATATTCCATTACTAAAA
1 AAACACCTTCAATATTTCATTACTAAAA
13131053 TTTTAAGATG
Statistics
Matches: 74, Mismatches: 12, Indels: 10
0.77 0.12 0.10
Matches are distributed among these distances:
62 5 0.07
63 61 0.82
64 6 0.08
65 2 0.03
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (63 bp):
AAACACCTTCAATATTTCATTACTAAAAATTGTTTGAGATAATTAAAAGTGTCTTGCAGTAAA
Found at i:13131866 original size:28 final size:28
Alignment explanation
Indices: 13131820--13131899 Score: 97
Period size: 28 Copynumber: 2.8 Consensus size: 28
13131810 TTTTCTTTAA
* *
13131820 ATATTGTGGTTTGTCGAATGGTATTGTGTG
1 ATATTGT--TTTGTTGAATGGTATTGTATG
13131850 ATATTGTTTTGTTGAATGGTATTGTATG
1 ATATTGTTTTGTTGAATGGTATTGTATG
* * *
13131878 ATATTGGTGTGCTGAATGGTAT
1 ATATTGTTTTGTTGAATGGTAT
13131900 GCTAAATGGT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
28 38 0.84
30 7 0.16
ACGTcount: A:0.20, C:0.03, G:0.30, T:0.47
Consensus pattern (28 bp):
ATATTGTTTTGTTGAATGGTATTGTATG
Found at i:13131931 original size:13 final size:13
Alignment explanation
Indices: 13131915--13131940 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13131905 ATGGTTTGTG
13131915 AATGGTGTTTCTA
1 AATGGTGTTTCTA
13131928 AATGGTGTTTCTA
1 AATGGTGTTTCTA
13131941 TACGTACTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (13 bp):
AATGGTGTTTCTA
Found at i:13145396 original size:25 final size:26
Alignment explanation
Indices: 13145363--13145412 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
13145353 TATATAAGGG
*
13145363 AAAAGAAAA-TAAAATGCATGAGAATT
1 AAAAGAAAATTAAAAGGCAT-AGAATT
13145389 AAAA-AAAATTAAAAGGCATAGAAT
1 AAAAGAAAATTAAAAGGCATAGAAT
13145413 ATGAAGTACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.64, C:0.04, G:0.14, T:0.18
Consensus pattern (26 bp):
AAAAGAAAATTAAAAGGCATAGAATT
Found at i:13152254 original size:15 final size:15
Alignment explanation
Indices: 13152234--13152269 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
13152224 ATAAGGAAAA
*
13152234 CAAAATATTCTTATC
1 CAAAATATTCATATC
*
13152249 CAAAATATTGATATC
1 CAAAATATTCATATC
13152264 CAAAAT
1 CAAAAT
13152270 CCCTTAAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.47, C:0.17, G:0.03, T:0.33
Consensus pattern (15 bp):
CAAAATATTCATATC
Found at i:13163612 original size:12 final size:12
Alignment explanation
Indices: 13163588--13163623 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
13163578 TTTTTAATTA
13163588 AAAATAATTTAAT
1 AAAA-AATTTAAT
*
13163601 AAAAACTTTAAT
1 AAAAAATTTAAT
13163613 AAAAAATTTAA
1 AAAAAATTTAA
13163624 ATTGATAGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 17 0.81
13 4 0.19
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAAAATTTAAT
Found at i:13164089 original size:24 final size:21
Alignment explanation
Indices: 13164038--13164081 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
13164028 TATAATATAA
13164038 TATAAAAATAATATTAAAAAT
1 TATAAAAATAATATTAAAAAT
*
13164059 TATAAAAATAATAATTTAAAAT
1 TATAAAAATAAT-ATTAAAAAT
13164081 T
1 T
13164082 TTTTAAAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (21 bp):
TATAAAAATAATATTAAAAAT
Found at i:13168423 original size:12 final size:12
Alignment explanation
Indices: 13168406--13168430 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
13168396 TGGTCTAATG
13168406 CCTAGTAAAACA
1 CCTAGTAAAACA
13168418 CCTAGTAAAACA
1 CCTAGTAAAACA
13168430 C
1 C
13168431 ATATAACTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.28, G:0.08, T:0.16
Consensus pattern (12 bp):
CCTAGTAAAACA
Found at i:13170082 original size:144 final size:140
Alignment explanation
Indices: 13169831--13170124 Score: 306
Period size: 144 Copynumber: 2.1 Consensus size: 140
13169821 ATTACTAGTA
* * * * **
13169831 TATTAAAAACTTTGATCGTACCTTAGAGATGTGAAATTACTAAAATGCCCTTTAGGGGTATTTTC
1 TATTAAAAACCTTGATCGCACCTTAGAAATGTGAAATTACTAAAATACCCTTTAGGAATATTTTC
* * * * *
13169896 ATAATTTGATCTTTTCGAGGTTGAATTTTTGCGAAAAGCTTTAAATCATGATTTGATATCATTTT
66 ATAATATGACCTTCTCGAGGTTGAATTTTT-CGAAAAGCTTTAAATCATG-TTTAAAATCATTTT
13169961 ATAATTTTTGATG
129 ATAATTTTT-ATG
* * *
13169974 TATTAAAAACCTTGATTGCACCTT-GAAATGTATGAAATTACTAAAATATCCTTTAGTAATATTT
1 TATTAAAAACCTTGATCGCACCTTAGAAATG--TGAAATTACTAAAATACCCTTTAGGAATATTT
* ** * *
13170038 TTATAATATGACCTTCTCGAGGTTAGGCTTTTAT-GAAACA-CTTTAGATCATGTTTAAAATTAT
64 TCATAATATGACCTTCTCGAGGTT-GAATTTT-TCGAAA-AGCTTTAAATCATGTTTAAAATCAT
*
13170101 TTTATGATTTTTATG
126 TTTATAATTTTTATG
*
13170116 CATTAAAAA
1 TATTAAAAA
13170125 TTCGATTGTA
Statistics
Matches: 125, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
142 16 0.13
143 40 0.32
144 62 0.50
145 6 0.05
146 1 0.01
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (140 bp):
TATTAAAAACCTTGATCGCACCTTAGAAATGTGAAATTACTAAAATACCCTTTAGGAATATTTTC
ATAATATGACCTTCTCGAGGTTGAATTTTTCGAAAAGCTTTAAATCATGTTTAAAATCATTTTAT
AATTTTTATG
Found at i:13183140 original size:36 final size:36
Alignment explanation
Indices: 13183099--13183204 Score: 158
Period size: 36 Copynumber: 2.9 Consensus size: 36
13183089 ATGGTTGGGT
* *
13183099 GAATCACATATGATGTGATTAGAGAATGAGTTGTAC
1 GAATCACATATGATGTGATTAGACAAAGAGTTGTAC
* *
13183135 GAATCACATATGATGTGATTAGACAAAGAGTTATGC
1 GAATCACATATGATGTGATTAGACAAAGAGTTGTAC
* *
13183171 AAATCACATAAGATGTGATTAGACAAAGAGTTGT
1 GAATCACATATGATGTGATTAGACAAAGAGTTGT
13183205 CACCTAATTG
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 63 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (36 bp):
GAATCACATATGATGTGATTAGACAAAGAGTTGTAC
Found at i:13186435 original size:3 final size:3
Alignment explanation
Indices: 13186414--13186469 Score: 51
Period size: 3 Copynumber: 17.3 Consensus size: 3
13186404 ATATAAAATC
13186414 TTA TTA TTTA TTTA TTTA TTA TTA TTA TTA TTTA TTA TTTA TT- TTA
1 TTA TTA -TTA -TTA -TTA TTA TTA TTA TTA -TTA TTA -TTA TTA TTA
*
13186460 TTA TTT TTA T
1 TTA TTA TTA T
13186470 CTAATCTTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
2 2 0.04
3 28 0.60
4 17 0.36
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (3 bp):
TTA
Found at i:13186464 original size:31 final size:32
Alignment explanation
Indices: 13186414--13186494 Score: 89
Period size: 31 Copynumber: 2.6 Consensus size: 32
13186404 ATATAAAATC
*
13186414 TTATTATTTA-TTTATTTATTATTAT-TATTAT
1 TTATTATTTATTTTA-TTATTATTATCTAATAT
* *
13186445 TTATTATTTATTTTATTATTTTTATCTAATCT
1 TTATTATTTATTTTATTATTATTATCTAATAT
13186477 TT-TTA-TTATTTTGATTAT
1 TTATTATTTATTTT-ATTAT
13186495 GGAATTATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
30 7 0.16
31 27 0.61
32 10 0.23
ACGTcount: A:0.26, C:0.02, G:0.01, T:0.70
Consensus pattern (32 bp):
TTATTATTTATTTTATTATTATTATCTAATAT
Found at i:13188679 original size:18 final size:18
Alignment explanation
Indices: 13188656--13188692 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
13188646 CGATGTCGTT
13188656 TTGCCCCTATGTTTTCTA
1 TTGCCCCTATGTTTTCTA
13188674 TTGCCCCTATGTTTTCTA
1 TTGCCCCTATGTTTTCTA
13188692 T
1 T
13188693 AAAAATCAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.11, C:0.27, G:0.11, T:0.51
Consensus pattern (18 bp):
TTGCCCCTATGTTTTCTA
Found at i:13189494 original size:18 final size:16
Alignment explanation
Indices: 13189455--13189504 Score: 68
Period size: 15 Copynumber: 3.1 Consensus size: 16
13189445 CTTTTTTAAA
13189455 AATTTTTTAATTAATT
1 AATTTTTTAATTAATT
13189471 AA-TTTTTAATTAATAAT
1 AATTTTTTAATTAAT--T
13189488 AATTTTTTAATT-ATT
1 AATTTTTTAATTAATT
13189503 AA
1 AA
13189505 ATATATTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
15 15 0.48
16 2 0.06
17 5 0.16
18 9 0.29
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
AATTTTTTAATTAATT
Found at i:13189513 original size:18 final size:18
Alignment explanation
Indices: 13189464--13189520 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
13189454 AAATTTTTTA
13189464 ATTAATTAAT-TTTTAATT
1 ATTAA-TAATATTTTAATT
* *
13189482 AATAATAATTTTTTAATT
1 ATTAATAATATTTTAATT
*
13189500 ATTAA-ATATATTTTAAAT
1 ATTAATA-ATATTTTAATT
13189518 ATT
1 ATT
13189521 TTATTATTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
17 5 0.15
18 28 0.85
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTAATAATATTTTAATT
Found at i:13190288 original size:102 final size:102
Alignment explanation
Indices: 13189969--13190286 Score: 386
Period size: 102 Copynumber: 3.1 Consensus size: 102
13189959 ATCACAAGTA
* * * * * *
13189969 AGAAAATAAAGAGACCAAGATTAAACCACAAGTCAGAGGATAACAACAATCGAGATTAAACTGTG
1 AGAAAATAAAAAGATCAAGATTAAACCGCGAGTCAAAGGATAACAACAATCGAGATTAAACTATG
13190034 ACTTTGAATTAAAGAGAT-AGGGATTGAACCGCGAATC
66 ACTTTGAATTAAAGAGATCA-GGATTGAACCGCGAATC
* * * * * * *
13190071 AGAGAATAAAAAGATCAGGATTAAATCGTGAGTTAAAAGATAACAACAATCGAGATTAAACTACG
1 AGAAAATAAAAAGATCAAGATTAAACCGCGAGTCAAAGGATAACAACAATCGAGATTAAACTATG
* * * * *
13190136 ATTTTAAATTATATAGATCAGGATTGAACCGTGAATC
66 ACTTTGAATTAAAGAGATCAGGATTGAACCGCGAATC
* * * *
13190173 GGAGAATAAAAAGATCAAGATTAAACCGCGAGTCAAAGGATAACAACAATCAAGATTAAACTATA
1 AGAAAATAAAAAGATCAAGATTAAACCGCGAGTCAAAGGATAACAACAATCGAGATTAAACTATG
* * *
13190238 ACTTTGAATTAAAGAAATCAAGATTGAACCACGAATC
66 ACTTTGAATTAAAGAGATCAGGATTGAACCGCGAATC
13190275 AGAAAGATAAAA
1 AGAAA-ATAAAA
13190287 GACCGGGATT
Statistics
Matches: 177, Mismatches: 37, Indels: 3
0.82 0.17 0.01
Matches are distributed among these distances:
102 170 0.96
103 7 0.04
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.21
Consensus pattern (102 bp):
AGAAAATAAAAAGATCAAGATTAAACCGCGAGTCAAAGGATAACAACAATCGAGATTAAACTATG
ACTTTGAATTAAAGAGATCAGGATTGAACCGCGAATC
Found at i:13190561 original size:73 final size:73
Alignment explanation
Indices: 13190429--13190800 Score: 401
Period size: 73 Copynumber: 5.1 Consensus size: 73
13190419 GGGAACTATA
* * * ** * * *
13190429 GAAATGATCGAGATTAAACCATGAGTCAAAGATTAAATATGACTGGGACT-AAATCGCAAGTCGA
1 GAAATGACCGGGATTAAACCACGACCCAAAGATTAAAGATGACTGGGACTGAACT-GTAAGTCGA
13190493 GGAATTAAT
65 GGAATTAAT
* ** * * *
13190502 GAAATGACCGGGATTAAATCGTGACCCAAAGATTAAAGATGATTGAGACTGAACTGCAAGTC-AG
1 GAAATGACCGGGATTAAACCACGACCCAAAGATTAAAGATGACTGGGACTGAACTGTAAGTCGAG
13190566 AGAATTAAT
66 -GAATTAAT
* * * *
13190575 GAAATGACTGGGATTAAACCACGACCTAAAGATTAAAAATGACTGGGATTGAA-TCGTAAGTC-A
1 GAAATGACCGGGATTAAACCACGACCCAAAGATTAAAGATGACTGGGACTGAACT-GTAAGTCGA
13190638 GGGAATTAAT
65 -GGAATTAAT
* * * * * * ** *
13190648 GAAATGATCAGGATTAAACCGCGAGCCAAAGGTTAAAGATGACTGAGACTGAACCATAAGTCGAA
1 GAAATGACCGGGATTAAACCACGACCCAAAGATTAAAGATGACTGGGACTGAACTGTAAGTCGAG
13190713 GAATTAAT
66 GAATTAAT
* * * *
13190721 GAAATGACCTGTATTAAACCACGAGCCAAAGATTAAAGATGACTGGGATTGAACTGTAAGTCGAG
1 GAAATGACCGGGATTAAACCACGACCCAAAGATTAAAGATGACTGGGACTGAACTGTAAGTCGAG
13190786 GAATTAAT
66 GAATTAAT
13190794 GAAATGA
1 GAAATGA
13190801 TCGGTATAAG
Statistics
Matches: 250, Mismatches: 43, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
72 3 0.01
73 242 0.97
74 5 0.02
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.22
Consensus pattern (73 bp):
GAAATGACCGGGATTAAACCACGACCCAAAGATTAAAGATGACTGGGACTGAACTGTAAGTCGAG
GAATTAAT
Found at i:13190801 original size:146 final size:146
Alignment explanation
Indices: 13190440--13190802 Score: 484
Period size: 146 Copynumber: 2.5 Consensus size: 146
13190430 AAATGATCGA
* * * * * *
13190440 GATTAAACCATGAGTCAAAGATTAAATATGACTGGGACTAAATCGCAAGTCGAGGAATTAATGAA
1 GATTAAACCACGAGCCAAAGATTAAAAATGACTGGGATTGAATCGTAAGTCGAGGAATTAATGAA
* * * * * **
13190505 ATGACCGGGATTAAATCGTGACCCAAAGATTAAAGATGATTGAGACTGAACTGCAAGTCAGAGAA
66 ATGATCAGGATTAAACCGCGACCCAAAGATTAAAGATGACTGAGACTGAACCACAAGTCAGAGAA
13190570 TTAATGAAATGACTGG
131 TTAATGAAATGACTGG
13190586 GATTAAACCACGA-CCTAAAGATTAAAAATGACTGGGATTGAATCGTAAGTC-AGGGAATTAATG
1 GATTAAACCACGAGCC-AAAGATTAAAAATGACTGGGATTGAATCGTAAGTCGA-GGAATTAATG
* * *
13190649 AAATGATCAGGATTAAACCGCGAGCCAAAGGTTAAAGATGACTGAGACTGAACCATAAGTC-GAA
64 AAATGATCAGGATTAAACCGCGACCCAAAGATTAAAGATGACTGAGACTGAACCACAAGTCAG-A
13190713 GAATTAATGAAATGACCT-G
128 GAATTAATGAAATGA-CTGG
* *
13190732 TATTAAACCACGAGCCAAAGATTAAAGATGACTGGGATTGAA-CTGTAAGTCGAGGAATTAATGA
1 GATTAAACCACGAGCCAAAGATTAAAAATGACTGGGATTGAATC-GTAAGTCGAGGAATTAATGA
13190796 AATGATC
65 AATGATC
13190803 GGTATAAGTT
Statistics
Matches: 192, Mismatches: 18, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
145 4 0.02
146 183 0.95
147 5 0.03
ACGTcount: A:0.41, C:0.13, G:0.23, T:0.22
Consensus pattern (146 bp):
GATTAAACCACGAGCCAAAGATTAAAAATGACTGGGATTGAATCGTAAGTCGAGGAATTAATGAA
ATGATCAGGATTAAACCGCGACCCAAAGATTAAAGATGACTGAGACTGAACCACAAGTCAGAGAA
TTAATGAAATGACTGG
Found at i:13190820 original size:30 final size:30
Alignment explanation
Indices: 13190777--13190837 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
13190767 GATTGAACTG
*
13190777 TAAGTCGAGGAATTAATGAAATGATCGGTA
1 TAAGTCGAAGAATTAATGAAATGATCGGTA
* *
13190807 TAAGTTGAAGAATTAATGAAATGATTGGTA
1 TAAGTCGAAGAATTAATGAAATGATCGGTA
13190837 T
1 T
13190838 TAAACTAGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.41, C:0.03, G:0.25, T:0.31
Consensus pattern (30 bp):
TAAGTCGAAGAATTAATGAAATGATCGGTA
Found at i:13190883 original size:103 final size:103
Alignment explanation
Indices: 13190703--13190907 Score: 313
Period size: 103 Copynumber: 2.0 Consensus size: 103
13190693 AGACTGAACC
*
13190703 ATAAGTCGAAGAATTAATGAAATGACCTGTATTAAACCACGAGCCAAAGATTAAAGATGACTGGG
1 ATAAGTCGAAGAATTAATGAAATGACCTGTATTAAACCACGAGCCAAAGATTAAAGATGACTGAG
* * * *
13190768 ATTGAACTGTAAGTCGAGGAATTAATGAAATGATCGGT
66 ACTGAACCGTAAGTCAAGAAATTAATGAAATGATCGGT
* * * *
13190806 ATAAGTTGAAGAATTAATGAAATGA-TTGGTATTAAACTAGGAGCCAAAGATTAAAGATGACTGA
1 ATAAGTCGAAGAATTAATGAAATGACCT-GTATTAAACCACGAGCCAAAGATTAAAGATGACTGA
13190870 GACTGAACCGTAAGTCAAGAAATTAATGAAATGATCGG
65 GACTGAACCGTAAGTCAAGAAATTAATGAAATGATCGG
13190908 GATTAAACCG
Statistics
Matches: 92, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
102 1 0.01
103 91 0.99
ACGTcount: A:0.42, C:0.10, G:0.23, T:0.24
Consensus pattern (103 bp):
ATAAGTCGAAGAATTAATGAAATGACCTGTATTAAACCACGAGCCAAAGATTAAAGATGACTGAG
ACTGAACCGTAAGTCAAGAAATTAATGAAATGATCGGT
Found at i:13190935 original size:176 final size:176
Alignment explanation
Indices: 13190640--13190976 Score: 475
Period size: 176 Copynumber: 1.9 Consensus size: 176
13190630 GTAAGTCAGG
* *
13190640 GAATTAATGAAATGATCAGGATTAAACCGCGAGCCAAAGGTTAAAGATGACTGAGACTGAACCAT
1 GAATTAATGAAATGATCAGGATTAAACAGCGAGCCAAAGATTAAAGATGACTGAGACTGAACCAT
* * *
13190705 AAGTCGAAGAATTAATGAAATGACCTGTATTAAACCACGAGCCAAAGATTAAAGATGACTGGGAT
66 AAGTCGAAGAATTAATGAAATGACCGGGATTAAACCACGAGCCAAAGATTAAAGATGACTGGGAC
* * **
13190770 TGAA-CTGTAAGTCGAGGAATTAATGAAATGATCGGTATAAGTTGAA
131 TGAATC-GCAAGTCAAAAAATTAATGAAATGATCGGTATAAGTTGAA
*
13190816 GAATTAATGAAATGAT-TGGTATTAAACTAG-GAGCCAAAGATTAAAGATGACTGAGACTGAACC
1 GAATTAATGAAATGATCAGG-ATTAAAC-AGCGAGCCAAAGATTAAAGATGACTGAGACTGAACC
* * * * *
13190879 GTAAGTC-AAGAAATTAATGAAATGATCGGGATTAAACCGCGAGCTAAAGGTTAAAGATGACTGG
64 ATAAGTCGAAG-AATTAATGAAATGACCGGGATTAAACCACGAGCCAAAGATTAAAGATGACTGG
13190943 GACTGAATCGCAAGTCAAAAAATTAATGAAATGA
128 GACTGAATCGCAAGTCAAAAAATTAATGAAATGA
13190977 CTGGATTAAA
Statistics
Matches: 142, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
175 5 0.04
176 135 0.95
177 2 0.01
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.23
Consensus pattern (176 bp):
GAATTAATGAAATGATCAGGATTAAACAGCGAGCCAAAGATTAAAGATGACTGAGACTGAACCAT
AAGTCGAAGAATTAATGAAATGACCGGGATTAAACCACGAGCCAAAGATTAAAGATGACTGGGAC
TGAATCGCAAGTCAAAAAATTAATGAAATGATCGGTATAAGTTGAA
Found at i:13191003 original size:145 final size:146
Alignment explanation
Indices: 13190817--13191103 Score: 432
Period size: 145 Copynumber: 2.0 Consensus size: 146
13190807 TAAGTTGAAG
* * *
13190817 AATTAATGAAATGATTGGTATTAAACTAGGAGCCAAAGATTAAAGATGACTGAGACTGAACCGTA
1 AATTAATGAAATGACTGGTATTAAACCAGGAGCCAAAGATTAAAGATGACTGAGACTGAACCGCA
* * *
13190882 AGTCAAGAAATTAATGAAATGATCGGGATTAAACCGCGAGCTAAAGGTTAAAGATGACTGGGACT
66 AGTCAAGAAATTAATGAAATGATCAGGATTAAACCGCGAGCCAAAGGTTAAAAATGACTGGGACT
*
13190947 GAATCGCAAGTCAAAA
131 GAACCGCAAGTCAAAA
* * * *
13190963 AATTAATGAAATGACTGG-ATTAAACCATGAGCCAAAGATTAAAGATGACTGGGATTGAATCGCA
1 AATTAATGAAATGACTGGTATTAAACCAGGAGCCAAAGATTAAAGATGACTGAGACTGAACCGCA
* * * *
13191027 AGTCAAGGAATTAATGAAATGATCAGGATTAAATCGGGAGCCAAAGGTTAAAAATGATTGGGACT
66 AGTCAAGAAATTAATGAAATGATCAGGATTAAACCGCGAGCCAAAGGTTAAAAATGACTGGGACT
13191092 GAACCGCAAGTC
131 GAACCGCAAGTC
13191104 GGAGGAACTA
Statistics
Matches: 126, Mismatches: 15, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
145 109 0.87
146 17 0.13
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.22
Consensus pattern (146 bp):
AATTAATGAAATGACTGGTATTAAACCAGGAGCCAAAGATTAAAGATGACTGAGACTGAACCGCA
AGTCAAGAAATTAATGAAATGATCAGGATTAAACCGCGAGCCAAAGGTTAAAAATGACTGGGACT
GAACCGCAAGTCAAAA
Found at i:13191022 original size:72 final size:73
Alignment explanation
Indices: 13190817--13191103 Score: 373
Period size: 73 Copynumber: 3.9 Consensus size: 73
13190807 TAAGTTGAAG
* * *
13190817 AATTAATGAAATGAT-TGGTATTAAACTAGGAGCCAAAGATTAAAGATGACTGAGACTGAACCGT
1 AATTAATGAAATGATCTGG-ATTAAACCAGGAGCCAAAGATTAAAGATGACTGGGACTGAACCGC
13190881 AAGTCAAGA
65 AAGTCAAGA
* * * *
13190890 AATTAATGAAATGATCGGGATTAAACC-GCGAGCTAAAGGTTAAAGATGACTGGGACTGAATCGC
1 AATTAATGAAATGATCTGGATTAAACCAG-GAGCCAAAGATTAAAGATGACTGGGACTGAACCGC
*
13190954 AAGTCAAAA
65 AAGTCAAGA
* * *
13190963 AATTAATGAAATGA-CTGGATTAAACCATGAGCCAAAGATTAAAGATGACTGGGATTGAATCGCA
1 AATTAATGAAATGATCTGGATTAAACCAGGAGCCAAAGATTAAAGATGACTGGGACTGAACCGCA
*
13191027 AGTCAAGG
66 AGTCAAGA
* * * * * *
13191035 AATTAATGAAATGATCAGGATTAAATCGGGAGCCAAAGGTTAAAAATGATTGGGACTGAACCGCA
1 AATTAATGAAATGATCTGGATTAAACCAGGAGCCAAAGATTAAAGATGACTGGGACTGAACCGCA
13191100 AGTC
66 AGTC
13191104 GGAGGAACTA
Statistics
Matches: 186, Mismatches: 24, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
72 65 0.35
73 119 0.64
74 2 0.01
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.22
Consensus pattern (73 bp):
AATTAATGAAATGATCTGGATTAAACCAGGAGCCAAAGATTAAAGATGACTGGGACTGAACCGCA
AGTCAAGA
Found at i:13204223 original size:24 final size:23
Alignment explanation
Indices: 13204202--13204249 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
13204192 TGAACAAGGA
*
13204202 GCTGGTCAGGGGGCTGGTCAAGAG
1 GCTGGTC-GAGGGCTGGTCAAGAG
*
13204226 GCTGGTCGAGGGCTGGAC-AGAG
1 GCTGGTCGAGGGCTGGTCAAGAG
13204248 GC
1 GC
13204250 AGTAGCGGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 6 0.27
23 9 0.41
24 7 0.32
ACGTcount: A:0.17, C:0.19, G:0.50, T:0.15
Consensus pattern (23 bp):
GCTGGTCGAGGGCTGGTCAAGAG
Found at i:13204248 original size:12 final size:12
Alignment explanation
Indices: 13204202--13204248 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
13204192 TGAACAAGGA
*
13204202 GCTGGTCAGGGG
1 GCTGGTCAGAGG
13204214 GCTGGTCA-AGAG
1 GCTGGTCAGAG-G
13204226 GCTGGTC-GAGG
1 GCTGGTCAGAGG
*
13204237 GCTGGACAGAGG
1 GCTGGTCAGAGG
13204249 CAGTAGCGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
11 8 0.27
12 22 0.73
ACGTcount: A:0.17, C:0.17, G:0.51, T:0.15
Consensus pattern (12 bp):
GCTGGTCAGAGG
Found at i:13204348 original size:20 final size:19
Alignment explanation
Indices: 13204290--13204335 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 19
13204280 TGTCTCATTT
13204290 CTTTTTTAATTAAT--TAA
1 CTTTTTTAATTAATAATAA
13204307 --TTTTTAATTAATAATAA
1 CTTTTTTAATTAATAATAA
13204324 CTTTTTTAATTA
1 CTTTTTTAATTA
13204336 TTAAATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.48
17 3 0.12
19 10 0.40
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (19 bp):
CTTTTTTAATTAATAATAA
Found at i:13204364 original size:3 final size:3
Alignment explanation
Indices: 13204352--13204389 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
13204342 ATATTTTAAA
13204352 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
13204390 ACTAAAATGA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:13204541 original size:3 final size:3
Alignment explanation
Indices: 13204535--13204573 Score: 51
Period size: 3 Copynumber: 12.0 Consensus size: 3
13204525 ATTTTTTTTG
13204535 TTA TTA TTA TTTA TTA TTA TATA TTTA TTA TTA TTA TTA
1 TTA TTA TTA -TTA TTA TTA T-TA -TTA TTA TTA TTA TTA
13204574 ACTTTTGTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
3 25 0.76
4 7 0.21
5 1 0.03
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:13204550 original size:10 final size:10
Alignment explanation
Indices: 13204535--13204573 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
13204525 ATTTTTTTTG
13204535 TTATTATTAT
1 TTATTATTAT
13204545 TTATTATTAT
1 TTATTATTAT
*
13204555 ATATTTATTA-
1 TTA-TTATTAT
13204565 TTATTATTA
1 TTATTATTA
13204574 ACTTTTGTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
9 6 0.23
10 14 0.54
11 6 0.23
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
TTATTATTAT
Found at i:13212299 original size:18 final size:19
Alignment explanation
Indices: 13212276--13212315 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
13212266 AAAGATTTGA
13212276 CTTTAAGAAC-TTAA-GCAT
1 CTTTAA-AACTTTAAGGCAT
13212294 CTTTAAAACTTTAAGGCAT
1 CTTTAAAACTTTAAGGCAT
13212313 CTT
1 CTT
13212316 ATTCTTTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 3 0.15
18 10 0.50
19 7 0.35
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (19 bp):
CTTTAAAACTTTAAGGCAT
Found at i:13212963 original size:160 final size:160
Alignment explanation
Indices: 13212699--13213023 Score: 614
Period size: 160 Copynumber: 2.0 Consensus size: 160
13212689 GTAATATTCT
*
13212699 TTCTTCAAATTTCTATGCAATTTAACATCCCATAAACTTTACACAAAAAAAATATGCATTTCATA
1 TTCTTCAAATTTCTATGCAATTTAACATCCCACAAACTTTACACAAAAAAAATATGCATTTCATA
*
13212764 GATCAAGAATAAAAACATATACATAGAAATCATTTTCCAAAGAAAAACACACTTATGAACTTATT
66 GATCAAGAATAAAAACAAATACATAGAAATCATTTTCCAAAGAAAAACACACTTATGAACTTATT
*
13212829 TCATGCTTCACCACATTCATACTCAAATCA
131 TCATGCTCCACCACATTCATACTCAAATCA
13212859 TTCTTCAAATTTCTATGCAATTTAACATCCCACAAACTTTACACAAAAAAAATATGCATTTCATA
1 TTCTTCAAATTTCTATGCAATTTAACATCCCACAAACTTTACACAAAAAAAATATGCATTTCATA
*
13212924 GATCAAGAATAAAAACAAATACATAGAAATCATTTTCCAAAGAAAAGCACACTTATGAACTTATT
66 GATCAAGAATAAAAACAAATACATAGAAATCATTTTCCAAAGAAAAACACACTTATGAACTTATT
13212989 TCATGCTCCACCACATTCATACTCAAATCA
131 TCATGCTCCACCACATTCATACTCAAATCA
13213019 TTCTT
1 TTCTT
13213024 GAAAAATTAA
Statistics
Matches: 161, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
160 161 1.00
ACGTcount: A:0.43, C:0.21, G:0.05, T:0.30
Consensus pattern (160 bp):
TTCTTCAAATTTCTATGCAATTTAACATCCCACAAACTTTACACAAAAAAAATATGCATTTCATA
GATCAAGAATAAAAACAAATACATAGAAATCATTTTCCAAAGAAAAACACACTTATGAACTTATT
TCATGCTCCACCACATTCATACTCAAATCA
Found at i:13217641 original size:21 final size:21
Alignment explanation
Indices: 13217616--13217658 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
13217606 ATGGAAAACC
13217616 AGGCTTGTAGTGTTGGAAGCA
1 AGGCTTGTAGTGTTGGAAGCA
*
13217637 AGGCTTGTAGTGTTGGATGCA
1 AGGCTTGTAGTGTTGGAAGCA
13217658 A
1 A
13217659 ATATAAAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.23, C:0.09, G:0.37, T:0.30
Consensus pattern (21 bp):
AGGCTTGTAGTGTTGGAAGCA
Found at i:13222327 original size:20 final size:20
Alignment explanation
Indices: 13222302--13222356 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 20
13222292 TTCAGAAATG
13222302 AATTTTCAAAAAGT-TTTAAA
1 AATTTTCAAAAA-TCTTTAAA
* *
13222322 AATTTTTGAAAAATCTTTAAG
1 AA-TTTTCAAAAATCTTTAAA
*
13222343 ATTTTTCAAAAATC
1 AATTTTCAAAAATC
13222357 CATTTTTGGG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 14 0.48
21 15 0.52
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.42
Consensus pattern (20 bp):
AATTTTCAAAAATCTTTAAA
Found at i:13222340 original size:21 final size:20
Alignment explanation
Indices: 13222304--13222356 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
13222294 CAGAAATGAA
13222304 TTTTCAAAAAGT-TTTAAAAAT
1 TTTTCAAAAA-TCTTT-AAAAT
* *
13222325 TTTTGAAAAATCTTTAAGAT
1 TTTTCAAAAATCTTTAAAAT
13222345 TTTTCAAAAATC
1 TTTTCAAAAATC
13222357 CATTTTTGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.43, C:0.08, G:0.06, T:0.43
Consensus pattern (20 bp):
TTTTCAAAAATCTTTAAAAT
Found at i:13226407 original size:44 final size:42
Alignment explanation
Indices: 13226334--13226422 Score: 108
Period size: 44 Copynumber: 2.1 Consensus size: 42
13226324 ATGATAATTC
*
13226334 TATAAAATAGAATTATTTTTAATAATAAATTTTGTTTAATTTTT
1 TATAAAATAGAATTATTTTTAATAATAAA--TTATTTAATTTTT
* **
13226378 TATAAAATA-AATTAATTTTTACTCCTAAATTATTTAATTTTT
1 TATAAAATAGAATT-ATTTTTAATAATAAATTATTTAATTTTT
13226420 TAT
1 TAT
13226423 CTGTAAGAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
42 15 0.38
43 4 0.10
44 21 0.52
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.54
Consensus pattern (42 bp):
TATAAAATAGAATTATTTTTAATAATAAATTATTTAATTTTT
Found at i:13227409 original size:55 final size:55
Alignment explanation
Indices: 13227350--13227488 Score: 143
Period size: 55 Copynumber: 2.5 Consensus size: 55
13227340 TTATTTTCTA
**
13227350 TCAGTATAAACTTGTATTTTTTAATTTTCTTACCTATACCGATGGTTAGAGACTG
1 TCAGTATAAACTTGTATTTTTTAATTTTCTTACCTATACCGACAGTTAGAGACTG
* ** * * * *
13227405 TCAGTATAAATTTGTATGCTTTACTTGTCTTACCTTTACCGACAGTTAGAGAGTG
1 TCAGTATAAACTTGTATTTTTTAATTTTCTTACCTATACCGACAGTTAGAGACTG
* * * * *
13227460 ACAATATAGACTTATATGTTTTAAATTTT
1 TCAGTATAAACTTGTAT-TTTTTAATTTT
13227489 TTATAATATT
Statistics
Matches: 64, Mismatches: 19, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
55 58 0.91
56 6 0.09
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (55 bp):
TCAGTATAAACTTGTATTTTTTAATTTTCTTACCTATACCGACAGTTAGAGACTG
Found at i:13228922 original size:23 final size:21
Alignment explanation
Indices: 13228872--13228911 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
13228862 GTTAATTTTT
13228872 AAAATAAACTTTAAAAATAAA
1 AAAATAAACTTTAAAAATAAA
*
13228893 AAAATAAAC-TTAATAATAA
1 AAAATAAACTTTAAAAATAA
13228912 TATCAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (21 bp):
AAAATAAACTTTAAAAATAAA
Found at i:13229098 original size:18 final size:18
Alignment explanation
Indices: 13229072--13229117 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
13229062 TATTTTTATA
13229072 AAGTAATAAA-TAAGAACT
1 AAGTAATAAATTAAGAA-T
*
13229090 AATTAATAAATTAAGAAT
1 AAGTAATAAATTAAGAAT
13229108 AAGTAATAAA
1 AAGTAATAAA
13229118 AAATAAAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 19 0.76
19 6 0.24
ACGTcount: A:0.63, C:0.02, G:0.09, T:0.26
Consensus pattern (18 bp):
AAGTAATAAATTAAGAAT
Found at i:13236874 original size:27 final size:30
Alignment explanation
Indices: 13236807--13236875 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 30
13236797 TCCGTATTTC
*
13236807 TTCTATTATTTTCATCTATATTTTGCTTTTCA
1 TTCTATT-TTTTCATCTATATTTT-CTTATCA
**
13236839 TTCCCTTTTTTCATC-AT-TTTT-TTATCA
1 TTCTATTTTTTCATCTATATTTTCTTATCA
13236866 TTCTATTTTT
1 TTCTATTTTT
13236876 ATGTGCCAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
27 13 0.41
29 4 0.12
30 2 0.06
31 8 0.25
32 5 0.16
ACGTcount: A:0.16, C:0.17, G:0.01, T:0.65
Consensus pattern (30 bp):
TTCTATTTTTTCATCTATATTTTCTTATCA
Found at i:13241180 original size:51 final size:50
Alignment explanation
Indices: 13241120--13241503 Score: 386
Period size: 49 Copynumber: 7.9 Consensus size: 50
13241110 TTGAAAAACA
* *
13241120 ATGATAATTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCCCTTTTCAAG
1 ATGAGAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAAGAG-CCTTTTCAAG
*
13241171 ATGAGAATTTTTAAAGTTGTTGAGCCTCTGTTGA-AAGAAGCCGTTTTCAAG
1 ATGAGAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAAG-AGCC-TTTTCAAG
* * * * *
13241222 ATGAGAAATTTTAAAATTGTTGAGCCTTTGCTGAGAAGAGCTTTTTAAAG
1 ATGAGAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAAGAGCCTTTTCAAG
* * *
13241272 ATGAG-ATTTTTAATA-TCGTTGAGCCTCTACTGAGAAGAGCTTTTTCAAG
1 ATGAGAATTTTTAA-AGTTGTTGAGCCTCTGCTGAGAAGAGCCTTTTCAAG
* * *
13241321 ATGA-AATTTTTAAAATTGTTGAGCCTCTGCTGAGAGGAG-ATTTTCCAAG
1 ATGAGAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAAGAGCCTTTT-CAAG
* * *
13241370 ATGAG-A-TTTTAAAGTCGTTGAACCTTTGCTGAG-AGTAG-CTTTTCCAA-
1 ATGAGAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAAG-AGCCTTTT-CAAG
* * *
13241417 AT-A-AATTTTTAAAATTGTTGAACCTCTGCTGAGATGAGCCTTTTCAAG
1 ATGAGAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAAGAGCCTTTTCAAG
* * *
13241465 AT---AA-TTTTAAAGTTGTTAAGCCTCTACTGAGAGGAGCCT
1 ATGAGAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAAGAGCCT
13241504 CTTTTAGATT
Statistics
Matches: 286, Mismatches: 33, Indels: 33
0.81 0.09 0.09
Matches are distributed among these distances:
46 32 0.11
47 34 0.12
48 46 0.16
49 79 0.28
50 17 0.06
51 75 0.26
52 3 0.01
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (50 bp):
ATGAGAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAAGAGCCTTTTCAAG
Found at i:13241762 original size:21 final size:19
Alignment explanation
Indices: 13241738--13241812 Score: 66
Period size: 19 Copynumber: 3.9 Consensus size: 19
13241728 TGTTAAATAA
*
13241738 TAAATAAAATAATAATATTAT
1 TAAATAAAATAATAA-A-AAT
*
13241759 TAAATACAATAATAAAAAT
1 TAAATAAAATAATAAAAAT
13241778 TAAATAAAA-AATACAAAA-
1 TAAATAAAATAATA-AAAAT
* *
13241796 -AAATATAATAACAAAAA
1 TAAATAAAATAATAAAAA
13241813 AAAAACAAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
17 11 0.23
18 7 0.15
19 14 0.30
20 1 0.02
21 14 0.30
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (19 bp):
TAAATAAAATAATAAAAAT
Found at i:13241921 original size:14 final size:14
Alignment explanation
Indices: 13241902--13241942 Score: 82
Period size: 14 Copynumber: 2.9 Consensus size: 14
13241892 AGCACCACTG
13241902 CCACCATACCCTAC
1 CCACCATACCCTAC
13241916 CCACCATACCCTAC
1 CCACCATACCCTAC
13241930 CCACCATACCCTA
1 CCACCATACCCTA
13241943 TCCCTCTCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.29, C:0.56, G:0.00, T:0.15
Consensus pattern (14 bp):
CCACCATACCCTAC
Found at i:13243023 original size:20 final size:21
Alignment explanation
Indices: 13242990--13243029 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
13242980 GTTAATTTTT
13242990 AAAATAAACTTTAAAAATAAA
1 AAAATAAACTTTAAAAATAAA
*
13243011 AAAATAAAC-TTAATAATAA
1 AAAATAAACTTTAAAAATAA
13243030 TACTAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (21 bp):
AAAATAAACTTTAAAAATAAA
Found at i:13243037 original size:23 final size:22
Alignment explanation
Indices: 13242989--13243040 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
13242979 TGTTAATTTT
13242989 TAAAATAAACTTTAAAAATAAA
1 TAAAATAAACTTTAAAAATAAA
*
13243011 -AAAATAAAC-TTAATAATAATA
1 TAAAATAAACTTTAAAAATAA-A
13243032 CTAAAATAA
1 -TAAAATAA
13243041 TAAAAATGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 9 0.35
21 10 0.38
23 7 0.27
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (22 bp):
TAAAATAAACTTTAAAAATAAA
Found at i:13243234 original size:18 final size:18
Alignment explanation
Indices: 13243208--13243253 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
13243198 TTTTTTTATA
13243208 AAGTAATAAA-TAAGAACT
1 AAGTAATAAATTAAGAA-T
*
13243226 AATTAATAAATTAAGAAT
1 AAGTAATAAATTAAGAAT
13243244 AAGTAATAAA
1 AAGTAATAAA
13243254 AAATAAGGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 19 0.76
19 6 0.24
ACGTcount: A:0.63, C:0.02, G:0.09, T:0.26
Consensus pattern (18 bp):
AAGTAATAAATTAAGAAT
Found at i:13244244 original size:15 final size:15
Alignment explanation
Indices: 13244224--13244259 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
13244214 TACCAAGTCT
*
13244224 GATAAAACAAACATC
1 GATAAAACAAACATA
*
13244239 GATAAAACAAATATA
1 GATAAAACAAACATA
13244254 GATAAA
1 GATAAA
13244260 GAGTTATACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.64, C:0.11, G:0.08, T:0.17
Consensus pattern (15 bp):
GATAAAACAAACATA
Found at i:13244910 original size:68 final size:68
Alignment explanation
Indices: 13244784--13244910 Score: 157
Period size: 68 Copynumber: 1.9 Consensus size: 68
13244774 ACAGAAGGTA
** * * *
13244784 AGAAGGTAATCATTTATTCATATACCAGCTGAAATAATTATATAAATATCCTAATCATTCATATA
1 AGAAGGTAATCATCCATTCATATACCAGCTAAAATAATTATATAAACATCATAATCATTCATATA
13244849 TAC
66 TAC
* * * *
13244852 AGAAGGTAATCATCCATTTATATTCCAG-TAAAAATAATTTTATAAACATCATATTCATT
1 AGAAGGTAATCATCCATTCATATACCAGCT-AAAATAATTATATAAACATCATAATCATT
13244911 AGTGTATGCA
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
67 1 0.02
68 48 0.98
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (68 bp):
AGAAGGTAATCATCCATTCATATACCAGCTAAAATAATTATATAAACATCATAATCATTCATATA
TAC
Found at i:13251822 original size:290 final size:288
Alignment explanation
Indices: 13251446--13252590 Score: 1214
Period size: 290 Copynumber: 4.0 Consensus size: 288
13251436 ACCAAAAACA
* * *
13251446 CCTTAAATAAT-CCCTCCAATTTTTTAGAAAGGATTATTCTAGGCATTTTCTACCAAAAATGCCT
1 CCTTGAATAATCCCCTCCAATTTTTTAG-AGGGATTATTCGAGGCATTTTCTACCAAAAATGCCT
* **
13251510 TCAATAATTCCCTTCCTTTTTTTTTTAGATCATTCTAGGCATTTTTGTGATAAAATGTCTCGAAT
65 TCAATAA-TCCCTT-CTTTTTTTTTT--ATCATTCTAGGCATTTTTGTGATAAAATGCCTTAAAT
** * * *
13251575 AATCCTCTTCACCCGTTTATGATGAGATTATTAAAGGTGTTTTTGCCTAAAAAAAAGCCTTGAAT
126 AATCCTCTTCAGGCGTTTATGACGAGATTATTAAAGGCGTTTTTACCTAAAAAAAA-CCTTGAAT
* * *
13251640 AATCCTTAACAAAATTTTGAATGGGGTTATTGAAGATGGTTCTAGCCAAAAACACATTGAATAAA
190 AATCCCTAACAAAATATTGAATGGGGTTATTGAAGATGGTTCTAGCCAATAACACATTGAATAAA
*
13251705 TCTTGGATTATTTAAGGCA-TTTTGG-CTAAACATG
255 TCTTGGATTATTGAAGGCATTTTTGGTC-AAA-ATG
** * * *
13251739 CCTTGAATAATCCTTTCCAATTGTTTAGAGGGAATTATTCGAGGTATTTTCTACCAAAAATGTCT
1 CCTTGAATAATCCCCTCCAATTTTTTAGAGGG-ATTATTCGAGGCATTTTCTACCAAAAATGCCT
* * * * *
13251804 TCAACAAT-CCTTTTTTTTTTTTATATCATTCTAGGCTTTTTTTATGA-AAAATGCCTTGAATAA
65 TCAATAATCCCTTCTTTTTTTTT-TATCATTCTAGGC-ATTTTTGTGATAAAATGCCTTAAATAA
* * * * * *
13251867 TCCTCTTCAGGAGTTAATGACGAGATTATTAAAGGTGTTTTTATCTAGAAAATACCTTGAATAAT
128 TCCTCTTCAGGCGTTTATGACGAGATTATTAAAGGCGTTTTTACCTAAAAAAAACCTTGAATAAT
* * *
13251932 CCCTAACAAAATATTGAATGGGGTTATTGAAGGTGTTTCTGGCCAATAACGACA-TGAATAAATC
193 CCCTAACAAAATATTGAATGGGGTTATTGAAGATGGTTCTAGCCAATAAC-ACATTGAATAAATC
*
13251996 TTGAATTATTGAAGGCATTTTTGGTCAAAAATG
257 TTGGATTATTGAAGGCATTTTTGGTC-AAAATG
* * * * *
13252029 CCTTCAATAATCCCCTCTAATTTTTTAGAGAGGATTATTTGAGGTATTTTCTGCCAAAAATGCCT
1 CCTTGAATAATCCCCTCCAATTTTTTAGAG-GGATTATTCGAGGCATTTTCTACCAAAAATGCCT
* *
13252094 TCAATAATCCCTTCCCATTTTTTTTTATCATTCTAGGCATTTTTGTGATAAAAAGCCTTAAATAA
65 TCAATAATCCCTT--CTTTTTTTTTTATCATTCTAGGCATTTTTGTGATAAAATGCCTTAAATAA
* * * * * * **
13252159 TCGC-CTTCA---G--TATGACAAGATTATTGAAGGCATTTTTGCCCAAAATATGCCTTGAATAA
128 TC-CTCTTCAGGCGTTTATGACGAGATTATTAAAGGCGTTTTTACCTAAAAAAAACCTTGAATAA
** * * *
13252218 TCCCTAACAAAATATTGAATGGGGTTATTGAAGGCGTTTCTA-ACATATAACACCTTGAATAAAT
192 TCCCTAACAAAATATTGAATGGGGTTATTGAAGATGGTTCTAGCCA-ATAACACATTGAATAAAT
* * **
13252282 CGTAGATTATTGAAGGCATTTTTGGTCAAAAAA
256 CTTGGATTATTGAAGGCATTTTTGGTCAAAATG
* * * * **
13252315 CCTTGAATAATCCCCTCTAATTTTTTAAAGGGGATTATTCGAGGCATTTTCTGTCAAAAAATATC
1 CCTTGAATAATCCCCTCCAATTTTTTAGA-GGGATTATTCGAGGCATTTTCT-ACCAAAAATGCC
* ** *
13252380 TTTAATAAT--C-TC--TTTTTTTTATCATTCTAGGTGTTTTTGTGATAAAATACCTTAAATAAT
64 TTCAATAATCCCTTCTTTTTTTTTTATCATTCTAGGCATTTTTGTGATAAAATGCCTTAAATAAT
* * * *
13252440 CCACTAT-AGGCGTTTATGACGAGATTATTGAAGGCGTTTTTACCTAGAAAAATATCTTGAATAA
129 CCTCT-TCAGGCGTTTATGACGAGATTATTAAAGGCGTTTTTACCTA-AAAAAAACCTTGAATAA
* * * * * *
13252504 TCTCTAATAAAATATTGAATCGGGG-TATTGAAGATGGTTTTAGCCAATAACGCCTTGTATAAAT
192 TCCCTAACAAAATATTGAAT-GGGGTTATTGAAGATGGTTCTAGCCAATAACACATTGAATAAAT
* *
13252568 CTCGGATTATTGAAGGTATTTTT
256 CTTGGATTATTGAAGGCATTTTT
13252591 TGTTAAAAAC
Statistics
Matches: 725, Mismatches: 100, Indels: 61
0.82 0.11 0.07
Matches are distributed among these distances:
279 1 0.00
280 48 0.07
281 1 0.00
282 1 0.00
283 1 0.00
284 1 0.00
285 29 0.04
286 134 0.18
287 139 0.19
289 81 0.11
290 144 0.20
291 35 0.05
292 39 0.05
293 23 0.03
294 48 0.07
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (288 bp):
CCTTGAATAATCCCCTCCAATTTTTTAGAGGGATTATTCGAGGCATTTTCTACCAAAAATGCCTT
CAATAATCCCTTCTTTTTTTTTTATCATTCTAGGCATTTTTGTGATAAAATGCCTTAAATAATCC
TCTTCAGGCGTTTATGACGAGATTATTAAAGGCGTTTTTACCTAAAAAAAACCTTGAATAATCCC
TAACAAAATATTGAATGGGGTTATTGAAGATGGTTCTAGCCAATAACACATTGAATAAATCTTGG
ATTATTGAAGGCATTTTTGGTCAAAATG
Found at i:13252242 original size:287 final size:286
Alignment explanation
Indices: 13251446--13252615 Score: 1162
Period size: 287 Copynumber: 4.0 Consensus size: 286
13251436 ACCAAAAACA
* * *
13251446 CCTTAAATAAT-CCCTCCAATTTTTTAGAAAGGATTATTCTAGGCATTTTCTACCAAAAATGCCT
1 CCTTCAATAATCCCCTCCAATTTTTTAGAGAGGATTATTCGAGGCATTTTCTACCAAAAATGCCT
* * **
13251510 TCAATAATTCCCTTCCTTTTTTTTTTAGATCATTCTAGGCATTTTTGTGATAAAATGTCTCGAAT
66 TCAATAA-T-CCTT-CTTTTTTTTTT--ATCATTCTAGGCATTTTTGTGATAAAAAGCCTTAAAT
* * * *
13251575 AATCCTCTTCACCCGTTTATGATGAGATTATTAAAGGTGTTTTTGCCTA-AAAAAAAGCCTTGAA
126 AATCCTCTTCA--CG-TTATGACGAGATTATTAAAGGCGTTTTTACCTAGAAAAATA-CCTTGAA
* * * *
13251639 TAATCCTTAACAAAATTTTGAATGGGGTTATTGAAGATGGTTCTAGCCAAAAACACATTGAATAA
187 TAATCCCTAACAAAATATTGAATGGGGTTATTGAAGATGTTTCTAGCCAATAACACA-TGAATAA
* * *
13251704 ATCTTGGATTATTTAAGGCA-TTTTGG-CTAAACATG
251 ATCTTGAATTATTGAAGGCATTTTTGGTC-AAAAATG
* ** * * *
13251739 CCTTGAATAATCCTTTCCAATTGTTTAGAG-GGAATTATTCGAGGTATTTTCTACCAAAAATGTC
1 CCTTCAATAATCCCCTCCAATTTTTTAGAGAGG-ATTATTCGAGGCATTTTCTACCAAAAATGCC
* * * *
13251803 TTCAACAATCCTTTTTTTTTTTTATATCATTCTAGGC-TTTTT-TTATGAAAAATGCCTTGAATA
65 TTCAATAATCCTTCTTTTTTTTT-TATCATTCTAGGCATTTTTGTGAT-AAAAA-GCCTTAAATA
* * *
13251866 ATCCTCTTCAGGAGTTAATGACGAGATTATTAAAGGTGTTTTTATCTAG-AAAATACCTTGAATA
127 ATCCTCTTCA--CGTT-ATGACGAGATTATTAAAGGCGTTTTTACCTAGAAAAATACCTTGAATA
* *
13251930 ATCCCTAACAAAATATTGAATGGGGTTATTGAAGGTGTTTCTGGCCAATAACGACATGAATAAAT
189 ATCCCTAACAAAATATTGAATGGGGTTATTGAAGATGTTTCTAGCCAATAAC-ACATGAATAAAT
13251995 CTTGAATTATTGAAGGCATTTTTGGTCAAAAATG
253 CTTGAATTATTGAAGGCATTTTTGGTCAAAAATG
* * * *
13252029 CCTTCAATAATCCCCTCTAATTTTTTAGAGAGGATTATTTGAGGTATTTTCTGCCAAAAATGCCT
1 CCTTCAATAATCCCCTCCAATTTTTTAGAGAGGATTATTCGAGGCATTTTCTACCAAAAATGCCT
*
13252094 TCAATAATCCCTTCCCATTTTTTTTTATCATTCTAGGCATTTTTGTGATAAAAAGCCTTAAATAA
66 TCAATAAT-CCTT--CTTTTTTTTTTATCATTCTAGGCATTTTTGTGATAAAAAGCCTTAAATAA
* * * * * * *
13252159 TCGC-CTTCA-G-TATGACAAGATTATTGAAGGCATTTTTGCCCA-AAATATGCCTTGAATAATC
128 TC-CTCTTCACGTTATGACGAGATTATTAAAGGCGTTTTTACCTAGAAAAATACCTTGAATAATC
** * * *
13252220 CCTAACAAAATATTGAATGGGGTTATTGAAGGCGTTTCTA-ACATATAACACCTTGAATAAATCG
192 CCTAACAAAATATTGAATGGGGTTATTGAAGATGTTTCTAGCCA-ATAACA-CATGAATAAATCT
*
13252284 T-AGATTATTGAAGGCATTTTTGGTCAAAAA-A
255 TGA-ATTATTGAAGGCATTTTTGGTCAAAAATG
* * * * * * **
13252315 CCTTGAATAATCCCCTCTAATTTTTTAAAGGGGATTATTCGAGGCATTTTCTGTCAAAAAATATC
1 CCTTCAATAATCCCCTCCAATTTTTTAGAGAGGATTATTCGAGGCATTTTCT-ACCAAAAATGCC
* **
13252380 TTTAATAAT-C-TC--TTTTTTTTATCATTCTAGGTGTTTTTGTGATAAAATA-CCTTAAATAAT
65 TTCAATAATCCTTCTTTTTTTTTTATCATTCTAGGCATTTTTGTGATAAAA-AGCCTTAAATAAT
* * *
13252440 CCACTAT-AGGCGTTTATGACGAGATTATTGAAGGCGTTTTTACCTAGAAAAATATCTTGAATAA
129 CCTCT-TCA--CG-TTATGACGAGATTATTAAAGGCGTTTTTACCTAGAAAAATACCTTGAATAA
* * * * *
13252504 TCTCTAATAAAATATTGAATCGGGG-TATTGAAGATGGTTT-TAGCCAATAACGCCTTGTATAAA
190 TCCCTAACAAAATATTGAAT-GGGGTTATTGAAGAT-GTTTCTAGCCAATAAC-ACATGAATAAA
* * * * * *
13252567 TCTCGGATTATTGAAGGTATTTTTTGTTAAAAACG
252 TCTTGAATTATTGAAGGCATTTTTGGTCAAAAATG
* *
13252602 CATTCAATGATCCC
1 CCTTCAATAATCCC
13252616 TTTTCTTTTT
Statistics
Matches: 746, Mismatches: 94, Indels: 80
0.81 0.10 0.09
Matches are distributed among these distances:
279 1 0.00
280 48 0.06
281 2 0.00
282 1 0.00
283 1 0.00
284 1 0.00
285 29 0.04
286 133 0.18
287 159 0.21
288 4 0.01
289 92 0.12
290 140 0.19
291 16 0.02
292 35 0.05
293 32 0.04
294 52 0.07
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (286 bp):
CCTTCAATAATCCCCTCCAATTTTTTAGAGAGGATTATTCGAGGCATTTTCTACCAAAAATGCCT
TCAATAATCCTTCTTTTTTTTTTATCATTCTAGGCATTTTTGTGATAAAAAGCCTTAAATAATCC
TCTTCACGTTATGACGAGATTATTAAAGGCGTTTTTACCTAGAAAAATACCTTGAATAATCCCTA
ACAAAATATTGAATGGGGTTATTGAAGATGTTTCTAGCCAATAACACATGAATAAATCTTGAATT
ATTGAAGGCATTTTTGGTCAAAAATG
Found at i:13252829 original size:62 final size:61
Alignment explanation
Indices: 13252763--13252882 Score: 134
Period size: 62 Copynumber: 1.9 Consensus size: 61
13252753 TTGAATGGGG
* * * *
13252763 TTATTGAAGGCATTTTCAGT-CAAAAACACCTTTAATAATCCGCTCTAATTTTTTGAAAGGCA
1 TTATTGAAGGCATTTT--GTACAAAAACACATTCAATAATCCCCTCCAATTTTTTGAAAGGCA
* ** *
13252825 TTATTTAAGGTGTTTTGTACCAAAAACACATTCAATAATCCCCTCCCATTTTTTGAAA
1 TTATTGAAGGCATTTTGTA-CAAAAACACATTCAATAATCCCCTCCAATTTTTTGAAA
13252883 TTATTTAAGA
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
60 2 0.04
62 46 0.96
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (61 bp):
TTATTGAAGGCATTTTGTACAAAAACACATTCAATAATCCCCTCCAATTTTTTGAAAGGCA
Found at i:13253754 original size:26 final size:27
Alignment explanation
Indices: 13253725--13253777 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
13253715 ATCACAGTAT
13253725 GGCTTTTAC-TCGTAAAATATTATTGG
1 GGCTTTTACTTCGTAAAATATTATTGG
13253751 GGCTTTTACTTCGTAAAATATTATTGG
1 GGCTTTTACTTCGTAAAATATTATTGG
13253778 TTTAAAGATG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.26, C:0.11, G:0.19, T:0.43
Consensus pattern (27 bp):
GGCTTTTACTTCGTAAAATATTATTGG
Found at i:13255227 original size:21 final size:20
Alignment explanation
Indices: 13255190--13255230 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
13255180 ACAACAAAGA
*
13255190 CTTGATGACCAAGAGCAATG
1 CTTGATGACCAACAGCAATG
*
13255210 CTTGAATGATCAACAGCAATG
1 CTTG-ATGACCAACAGCAATG
13255231 AATCGTAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (20 bp):
CTTGATGACCAACAGCAATG
Found at i:13265002 original size:171 final size:171
Alignment explanation
Indices: 13264691--13265029 Score: 497
Period size: 171 Copynumber: 2.0 Consensus size: 171
13264681 GTGATAGTGG
* *
13264691 GTGAAGGCCGGCTTTGGGGCTTGTGAAGGCTGGTGGGTCAGGAGAAGCGCTGGGGGTTTTGGTGA
1 GTGAAGGCCGGCTTTGGGGCTTGTGAAGGCTGGTGGGTCAAGAGAAGCGCTGGGGGTTTTAGTGA
** *
13264756 GGGCTGGGTTGCGTGGGTGCGGGCAAAGCTTGAGCCGAGCGTGGGTTGTTGATGGCGCTGGGGGT
66 GGGCTGGGTTGCAAGGGTGCGGGCAAAGCTTGAGCCGAGCATGGGTTGTTGATGGCGCTGGGGGT
*
13264821 TTGGCCGGGGCTTGGTTGTGAGGATGGATCCTGTAGGGGTT
131 TTGGCCGGGGCTTGGTTGTGAGGATGGATCCTGCAGGGGTT
** *
13264862 GTGAAGGTTGGCTTTTGGGCTTGTGAAGGCTGGTGGGTCAAGA-AAGTGGCGCT-GGGGTTTTAG
1 GTGAAGGCCGGCTTTGGGGCTTGTGAAGGCTGGTGGGTCAAGAGAA---GCGCTGGGGGTTTTAG
** **
13264925 TGAGGGCTGGGTTGCAAGGGTG-GGCGCAAAGCTTGAGTTGAGCATGGGTTGTTGATGTTGCT-G
63 TGAGGGCTGGGTTGCAAGGGTGCGG-GCAAAGCTTGAGCCGAGCATGGGTTGTTGATGGCGCTGG
13264988 GGGTTTGGCCGGGGCTTGGTTGTGAGGATGGATCCTGCAGGG
127 GGGTTTGGCCGGGGCTTGGTTGTGAGGATGGATCCTGCAGGG
13265030 ATTCTCGGTG
Statistics
Matches: 151, Mismatches: 13, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
170 2 0.01
171 83 0.55
172 61 0.40
173 5 0.03
ACGTcount: A:0.13, C:0.12, G:0.48, T:0.27
Consensus pattern (171 bp):
GTGAAGGCCGGCTTTGGGGCTTGTGAAGGCTGGTGGGTCAAGAGAAGCGCTGGGGGTTTTAGTGA
GGGCTGGGTTGCAAGGGTGCGGGCAAAGCTTGAGCCGAGCATGGGTTGTTGATGGCGCTGGGGGT
TTGGCCGGGGCTTGGTTGTGAGGATGGATCCTGCAGGGGTT
Found at i:13265705 original size:20 final size:20
Alignment explanation
Indices: 13265677--13265715 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
13265667 TTAAATTCAA
* *
13265677 AAATTAAATAAATTTAAGTC
1 AAATCAAATAAAATTAAGTC
13265697 AAATCAAATAAAATTAAGT
1 AAATCAAATAAAATTAAGT
13265716 ATTTATAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (20 bp):
AAATCAAATAAAATTAAGTC
Found at i:13265857 original size:26 final size:25
Alignment explanation
Indices: 13265828--13265877 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
13265818 TTGCAAAAGG
*
13265828 TTTTTTTTTTG-TTTTTTTAATTTTA
1 TTTTTTTATTGATTTTTTT-ATTTTA
13265853 TTTTTTTATTGATTTTTTTATTTTA
1 TTTTTTTATTGATTTTTTTATTTTA
13265878 ATAAATTTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.14, C:0.00, G:0.04, T:0.82
Consensus pattern (25 bp):
TTTTTTTATTGATTTTTTTATTTTA
Found at i:13265869 original size:13 final size:12
Alignment explanation
Indices: 13265827--13265874 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
13265817 TTTGCAAAAG
13265827 GTTTTTTTT-TT
1 GTTTTTTTTATT
*
13265838 GTTTTTTTAATT
1 GTTTTTTTTATT
*
13265850 TTATTTTTTTATT
1 GT-TTTTTTTATT
*
13265863 GATTTTTTTATT
1 GTTTTTTTTATT
13265875 TTAATAAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
11 8 0.27
12 13 0.43
13 9 0.30
ACGTcount: A:0.12, C:0.00, G:0.06, T:0.81
Consensus pattern (12 bp):
GTTTTTTTTATT
Found at i:13265992 original size:6 final size:6
Alignment explanation
Indices: 13265981--13266030 Score: 77
Period size: 6 Copynumber: 8.5 Consensus size: 6
13265971 TTTACAAATT
13265981 TTAAAA TTAAAA -T-AAA TTAAAA TTATAAA TTAAAA TTAAAA TTAAAA
1 TTAAAA TTAAAA TTAAAA TTAAAA TTA-AAA TTAAAA TTAAAA TTAAAA
13266028 TTA
1 TTA
13266031 TAAAATTAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
4 3 0.07
5 2 0.05
6 30 0.73
7 6 0.15
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
TTAAAA
Found at i:13266010 original size:13 final size:13
Alignment explanation
Indices: 13265992--13266039 Score: 80
Period size: 13 Copynumber: 3.7 Consensus size: 13
13265982 TAAAATTAAA
13265992 ATAAATTAAAATT
1 ATAAATTAAAATT
13266005 ATAAATTAAAATT
1 ATAAATTAAAATT
13266018 A-AAATTAAAATT
1 ATAAATTAAAATT
13266030 ATAAAATTAA
1 AT-AAATTAA
13266040 CTCAAAAGAC
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
12 12 0.36
13 14 0.42
14 7 0.21
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
ATAAATTAAAATT
Found at i:13266028 original size:25 final size:24
Alignment explanation
Indices: 13265976--13266039 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 24
13265966 GAGATTTTAC
*
13265976 AAATTTTAAAATTAAAATAAATTA
1 AAATTATAAAATTAAAATAAATTA
13266000 AAATTAT-AAATTAAAATTAAAATTA
1 AAATTATAAAATTAAAA-T-AAATTA
13266025 AAATTATAAAATTAA
1 AAATTATAAAATTAA
13266040 CTCAAAAGAC
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
23 9 0.25
24 7 0.19
25 13 0.36
26 7 0.19
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (24 bp):
AAATTATAAAATTAAAATAAATTA
Done.