Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 78 of 117
Found at i:13859530 original size:22 final size:22
Alignment explanation
Indices: 13859502--13859574 Score: 92
Period size: 22 Copynumber: 3.3 Consensus size: 22
13859492 TCTTTAAAAC
* * *
13859502 CTTAAAGGTTTTGCCCAAAGGT
1 CTTAAAGATTGTGCTCAAAGGT
*
13859524 CTTAAAGATTGTGCTCGAAGGT
1 CTTAAAGATTGTGCTCAAAGGT
* *
13859546 TTTAAAGATTGTGCTCAGAGGT
1 CTTAAAGATTGTGCTCAAAGGT
13859568 CTTAAAG
1 CTTAAAG
13859575 GTCTTAAGGA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.33
Consensus pattern (22 bp):
CTTAAAGATTGTGCTCAAAGGT
Found at i:13859532 original size:57 final size:58
Alignment explanation
Indices: 13859415--13859534 Score: 163
Period size: 57 Copynumber: 2.1 Consensus size: 58
13859405 AGGTTTTAGG
* * *
13859415 GATTGCAAAAATCTTTGAAACTTTAAAAATTTAAAAGGTTTTGCTCGAAGGTCTTAAA
1 GATTGCAAAAATCTTTGAAACTTTAAAAACTTAAAAGGTTTTGCCCAAAGGTCTTAAA
* * *
13859473 GATTTCAAAAAT-TGTTGAATCTTTAAAACCTT-AAAGGTTTTGCCCAAAGGTCTTAAA
1 GATTGCAAAAATCT-TTGAAACTTTAAAAACTTAAAAGGTTTTGCCCAAAGGTCTTAAA
13859530 GATTG
1 GATTG
13859535 TGCTCGAAGG
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 28 0.52
58 26 0.48
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.35
Consensus pattern (58 bp):
GATTGCAAAAATCTTTGAAACTTTAAAAACTTAAAAGGTTTTGCCCAAAGGTCTTAAA
Found at i:13859923 original size:18 final size:18
Alignment explanation
Indices: 13859896--13859944 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
13859886 AACATCAAAT
* *
13859896 GATGCTAATGGAAATGTC
1 GATGCAAATGCAAATGTC
*
13859914 GATGCAAATGCAATTGTC
1 GATGCAAATGCAAATGTC
*
13859932 CATGCAAATGCAA
1 GATGCAAATGCAA
13859945 GAATGTGAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.24
Consensus pattern (18 bp):
GATGCAAATGCAAATGTC
Found at i:13862065 original size:26 final size:26
Alignment explanation
Indices: 13862010--13862066 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
13862000 ATTTCAACAG
* * * **
13862010 TTTTTTATTTTTTTTTGTTTTGTGTT
1 TTTTTTATATTTTTTTATTTTGGGCC
13862036 TTTTTTATATTTTTTTATTTTGGGCC
1 TTTTTTATATTTTTTTATTTTGGGCC
13862062 TTTTT
1 TTTTT
13862067 CTTGTCCCTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.07, C:0.04, G:0.11, T:0.79
Consensus pattern (26 bp):
TTTTTTATATTTTTTTATTTTGGGCC
Found at i:13865933 original size:25 final size:21
Alignment explanation
Indices: 13865904--13865955 Score: 52
Period size: 21 Copynumber: 2.3 Consensus size: 21
13865894 AACTAAAGTG
13865904 AACATATATATGCAATATAAATGA
1 AACATATA-ATGCAA-A-AAATGA
*
13865928 AGACAT-TAATGTAAAAAATGA
1 A-ACATATAATGCAAAAAATGA
13865949 AACATAT
1 AACATAT
13865956 GCAAAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
20 4 0.16
21 8 0.32
22 1 0.04
23 5 0.20
24 3 0.12
25 4 0.16
ACGTcount: A:0.56, C:0.08, G:0.10, T:0.27
Consensus pattern (21 bp):
AACATATAATGCAAAAAATGA
Found at i:13865961 original size:18 final size:19
Alignment explanation
Indices: 13865911--13865962 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 19
13865901 GTGAACATAT
13865911 ATATGCAATATAAATGAAGAC
1 ATATGCAA-A-AAATGAAGAC
*
13865932 ATTAATGTAAAAAATGAA-AC
1 A-T-ATGCAAAAAATGAAGAC
13865952 ATATGCAAAAA
1 ATATGCAAAAA
13865963 TAATGATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
18 8 0.30
19 1 0.04
20 3 0.11
21 8 0.30
22 2 0.07
23 5 0.19
ACGTcount: A:0.58, C:0.08, G:0.12, T:0.23
Consensus pattern (19 bp):
ATATGCAAAAAATGAAGAC
Found at i:13868631 original size:145 final size:145
Alignment explanation
Indices: 13868364--13868701 Score: 396
Period size: 145 Copynumber: 2.3 Consensus size: 145
13868354 TTAAAGTACT
* * * ** *
13868364 AAAAATCATGAAATATTATGAAACTAAGATCTGAAAAGTTTCATGAAATTTTGAGCTTGAAAAGG
1 AAAAATAATGAAATATTATAAAATTAAGATCTGAAAAGTTTCACAAAATTATGAGCTTGAAAAGG
* * **
13868429 CCAAATTATGAAAATACCCTTATAAGGGTATTTTAGTAATTTCACACTTTTTGGGGTACTGCTAT
66 CCAAATTATGAAAATACCCTTAAAAAGGTATTTTAGTAATTTCACACTTTTCAGGGTACTGCTAT
*
13868494 GGTTTCAAACTCT-CC
131 GATTTCAAA-TCTACC
* * *
13868509 AAAAATTATGAAATATTATAAAATTGAA-ATCTGGAAAGTTTCACAAAATTATGAGCTTAGGAAA
1 AAAAATAATGAAATATTATAAAATT-AAGATCTGAAAAGTTTCACAAAATTATGAGCTT-GAAAA
* * * *
13868573 -GCCAAATTATGAAAATACCTTTAAAAATGTATTTTGGTAATTTTATC-CTTTTCAGGGTACTGC
64 GGCCAAATTATGAAAATACCCTTAAAAAGGTATTTTAGTAATTTCA-CACTTTTCAGGGTACTGC
** * *
13868636 TATGATTTTTAATGTATC
128 TATGATTTCAAATCTACC
* *
13868654 AAAAATAATGAAATATTATAAAATTAAGATCTAAAAAGTCTCACAAAA
1 AAAAATAATGAAATATTATAAAATTAAGATCTGAAAAGTTTCACAAAA
13868702 ATCCAAGCTC
Statistics
Matches: 163, Mismatches: 25, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
144 4 0.02
145 152 0.93
146 7 0.04
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (145 bp):
AAAAATAATGAAATATTATAAAATTAAGATCTGAAAAGTTTCACAAAATTATGAGCTTGAAAAGG
CCAAATTATGAAAATACCCTTAAAAAGGTATTTTAGTAATTTCACACTTTTCAGGGTACTGCTAT
GATTTCAAATCTACC
Found at i:13868716 original size:145 final size:144
Alignment explanation
Indices: 13868428--13868739 Score: 351
Period size: 145 Copynumber: 2.2 Consensus size: 144
13868418 GCTTGAAAAG
* * **
13868428 GCCAAATTATGAAAATACCCTTATAAGGGTATTTTAGTAATTTCACACTTTTTGGGGTACTGCTA
1 GCCAAATTATGAAAATACCCTTAAAAAGGTATTTTAGTAATTTCACACTTTTCAGGGTACTGCTA
* * ** * *
13868493 TGGTTTCAAACTCTCCAAAAATTATGAAATATTATAAAATTGAAATCTGGAAAGTTTCACAAAAT
66 TGATTTCAAACTCTCCAAAAATAATGAAATATTATAAAATTGAAATCTAAAAAGTCTCACAAAAA
** *
13868558 TATGAGCTTAGGAAA
131 TACAAGCTCAGG-AA
* * * *
13868573 GCCAAATTATGAAAATACCTTTAAAAATGTATTTTGGTAATTTTATC-CTTTTCAGGGTACTGCT
1 GCCAAATTATGAAAATACCCTTAAAAAGGTATTTTAGTAATTTCA-CACTTTTCAGGGTACTGCT
** * *
13868637 ATGATTTTTAA-TGTATCAAAAATAATGAAATATTATAAAATT-AAGATCTAAAAAGTCTCACAA
65 ATGATTTCAAACTCT-CCAAAAATAATGAAATATTATAAAATTGAA-ATCTAAAAAGTCTCACAA
*
13868700 AAATCCAAGCTCAGGAA
128 AAATACAAGCTCAGGAA
* *
13868717 GTCAAATTATGAAATTACCCTTA
1 GCCAAATTATGAAAATACCCTTA
13868740 TAAGGGTTTT
Statistics
Matches: 139, Mismatches: 25, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
144 26 0.19
145 112 0.81
146 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (144 bp):
GCCAAATTATGAAAATACCCTTAAAAAGGTATTTTAGTAATTTCACACTTTTCAGGGTACTGCTA
TGATTTCAAACTCTCCAAAAATAATGAAATATTATAAAATTGAAATCTAAAAAGTCTCACAAAAA
TACAAGCTCAGGAA
Found at i:13870898 original size:18 final size:18
Alignment explanation
Indices: 13870875--13870910 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
13870865 TCTAGGTATT
13870875 TGGAACATATTGACACCA
1 TGGAACATATTGACACCA
13870893 TGGAACATATTGACACCA
1 TGGAACATATTGACACCA
13870911 AGTTTAATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22
Consensus pattern (18 bp):
TGGAACATATTGACACCA
Found at i:13873149 original size:256 final size:258
Alignment explanation
Indices: 13872639--13873188 Score: 646
Period size: 256 Copynumber: 2.1 Consensus size: 258
13872629 ATGTCGTCAT
* * * *
13872639 TACAAATATTATAAAATTTTTCATAACAACTTTAT-TTATCATTGTATAAAATATTAAAAAAATT
1 TACAAATATGATAACATTTTTCGTAACAACTTTGTCTT-T-A-T-T-TAAAATATTAAAAAAATT
* * * * *
13872703 TTAAGCAATGACTTTAAAAAATTGTTGCAATAAAAAAAAAGGGTATTCACAACAACTTTTTTTTA
61 TTAAGCAACGACCTTAAAAAATCGTTGCAATAAAAAAAAA-GGTATTCACAACAAATTTTTCTTA
* * * * *
13872768 TCATTATAAATATGATAACATTTTTCGTAACAACTTTTTTTGTCGTTATTTAAAATATTAAAATA
125 TCATTAAAAATATGAAAACATTTTTCGTAACAACTTTTTTTGTCGTCATATAAAACATTAAAATA
* * * * *
13872833 TAATTTAAGTAATGACTTTAAAAAATAGTTGTAAATAAAAAAATATTTGAAACAACTTTTTGTTG
190 TAATTTAAGCAACGACTTTAAAAAATAGTTGCAAATAAAAAAATATTCGAAACAACTTTTTATTG
*
13872898 CCGC
255 CCAC
* * *
13872902 TACAAATATGATAACATTTTTTGTAACAACTTTGTCTTTATTTAAAATATTAAAACATTATTTAA
1 TACAAATATGATAACATTTTTCGTAACAACTTTGTCTTTATTTAAAATATTAAAAAAAT-TTTAA
* *
13872967 GCAACGACCTTAAAAAATCGTTGCAA-ATAAAAAAA-GTATTCACAACAAATTTTTCTTGTCATT
65 GCAACGACCTTAAAAAATCGTTGCAATAAAAAAAAAGGTATTCACAACAAATTTTTCTTATCATT
* *
13873030 AAAAATATTAAAACATTTTT-GTAATAA-TTTTATTTGTCGTCATATAAAACATTAAAATA-AAT
130 AAAAATATGAAAACATTTTTCGTAACAACTTTT-TTTGTCGTCATATAAAACATTAAAATATAA-
* * * * *
13873092 TTTAAGCAACGACTTTGAAAAATTGTTGCAAATAACAAAATATTCGCAAGC-ACTTTTTATTGTC
193 TTTAAGCAACGACTTTAAAAAATAGTTGCAAATAAAAAAATATTCG-AAACAACTTTTTATTGCC
*
13873156 AT
257 AC
* *
13873158 TACAAATATTATAATATTTTTCGTAACAACT
1 TACAAATATGATAACATTTTTCGTAACAACT
13873189 CTTTTTGCCA
Statistics
Matches: 246, Mismatches: 36, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
255 6 0.02
256 108 0.44
257 45 0.18
259 23 0.09
260 29 0.12
261 1 0.00
262 1 0.00
263 31 0.13
264 2 0.01
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (258 bp):
TACAAATATGATAACATTTTTCGTAACAACTTTGTCTTTATTTAAAATATTAAAAAAATTTTAAG
CAACGACCTTAAAAAATCGTTGCAATAAAAAAAAAGGTATTCACAACAAATTTTTCTTATCATTA
AAAATATGAAAACATTTTTCGTAACAACTTTTTTTGTCGTCATATAAAACATTAAAATATAATTT
AAGCAACGACTTTAAAAAATAGTTGCAAATAAAAAAATATTCGAAACAACTTTTTATTGCCAC
Found at i:13873207 original size:130 final size:130
Alignment explanation
Indices: 13872465--13873263 Score: 603
Period size: 130 Copynumber: 6.1 Consensus size: 130
13872455 CTAAAAATCA
* * *
13872465 TTGCAAATAAAATAAGT-TTACACAACAACTTTTT-TT-TCATGACAAATATGATCAA-ATATTT
1 TTGCAAATAAAAAAAGTATT-CACAACAACTTTTTATTGTCATTACAAATATTAT-AACAT-TTT
* * * * * * * *
13872526 TTGTAACAACTTTTTTTTATCATTGTATAAAATTTTGAACTAATAA-CTTAAGCAACAACATTT-
63 TCGTAACAAC-TTTATTTGTCATTATATAAAATATT-AA--AAAAATTTTAAGCAACGAC-TTTA
*
13872589 AAAAATGG
123 AAAAATTG
** * * * * *
13872597 TTGCAAATAATTAGAGTTTTTATAACAA--TTTTATGTCGTCATTACAAATATTATAAAATTTTT
1 TTGCAAATAAAAAAAGTATTCACAACAACTTTTTAT-T-GTCATTACAAATATTATAACATTTTT
* * * *
13872660 CATAACAACTTTATTTATCATTGTATAAAATATTAAAAAAATTTTAAGCAATGACTTTAAAAAAT
64 CGTAACAACTTTATTTGTCATTATATAAAATATTAAAAAAATTTTAAGCAACGACTTTAAAAAAT
13872725 TG
129 TG
* * * * *
13872727 TTGCAATAAAAAAAAAGGGTATTCACAACAACTTTTTTTTATCATTATAAATATGATAACATTTT
1 TTGCAA-ATAAAAAAA--GTATTCACAACAACTTTTTATTGTCATTACAAATATTATAACATTTT
* * * * *
13872792 TCGTAACAACTTTTTTTGTCGTTATTTAAAATATTAAAATATAA-TTTAAGTAATGACTTTAAAA
63 TCGTAACAACTTTATTTGTCATTATATAAAATATTAAAA-A-AATTTTAAGCAACGACTTTAAAA
*
13872856 AATAG
126 AATTG
* * * * ** * *
13872861 TTGTAAATAAAAAAA-TATTTGA-AACAACTTTTTGTTGCCGCTACAAATATGATAACATTTTTT
1 TTGCAAATAAAAAAAGTA-TTCACAACAACTTTTTATTGTCATTACAAATATTATAACATTTTTC
* * * * *
13872924 GTAACAAC----TTTGTCTTTATTTAAAATATTAAAACATTATTTAAGCAACGACCTTAAAAAAT
65 GTAACAACTTTATTTGTCATTATATAAAATATTAAAAAAAT-TTTAAGCAACGACTTTAAAAAAT
*
13872985 CG
129 TG
* * * *
13872987 TTGCAAATAAAAAAAGTATTCACAACAAATTTTTCTTGTCATTAAAAATATTAAAACATTTTT-G
1 TTGCAAATAAAAAAAGTATTCACAACAACTTTTTATTGTCATTACAAATATTATAACATTTTTCG
* * * * * *
13873051 TAATAATTTTATTTGTCGTCATATAAAACATTAAAATAAATTTTAAGCAACGACTTTGAAAAATT
66 TAACAACTTTATTTGTCATTATATAAAATATTAAAA-AAATTTTAAGCAACGACTTTAAAAAATT
13873116 G
130 G
* * *
13873117 TTGCAAATAACAAAA-TATTCGCAAGC-ACTTTTTATTGTCATTACAAATATTATAATATTTTTC
1 TTGCAAATAAAAAAAGTATTCACAA-CAACTTTTTATTGTCATTACAAATATTATAACATTTTTC
* ** * * ** * * *
13873180 GTAACAACTCTT-TTTGCCATTGCATAAAAGATTTAAAAATAGCTTAAACAAC-AATATCAAAAA
65 GTAACAACT-TTATTTGTCATTATATAAAATA-TTAAAAAAATTTTAAGCAACGACT-TTAAAAA
13873243 ATTG
127 ATTG
* *
13873247 TTGTAAATAAAATAAGT
1 TTGCAAATAAAAAAAGT
13873264 TTTCGTAATA
Statistics
Matches: 536, Mismatches: 100, Indels: 63
0.77 0.14 0.09
Matches are distributed among these distances:
124 1 0.00
126 68 0.13
127 34 0.06
129 48 0.09
130 180 0.34
131 22 0.04
132 43 0.08
133 87 0.16
134 46 0.09
135 7 0.01
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (130 bp):
TTGCAAATAAAAAAAGTATTCACAACAACTTTTTATTGTCATTACAAATATTATAACATTTTTCG
TAACAACTTTATTTGTCATTATATAAAATATTAAAAAAATTTTAAGCAACGACTTTAAAAAATTG
Found at i:13873731 original size:3 final size:3
Alignment explanation
Indices: 13873721--13873756 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
13873711 AAAAAATTTT
13873721 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
13873757 GAAATTTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:13873866 original size:13 final size:13
Alignment explanation
Indices: 13873848--13873873 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13873838 AATTATTAAT
13873848 TAATAAAAATAAA
1 TAATAAAAATAAA
13873861 TAATAAAAATAAA
1 TAATAAAAATAAA
13873874 AATTCTGATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
TAATAAAAATAAA
Found at i:13874071 original size:19 final size:19
Alignment explanation
Indices: 13874014--13874074 Score: 56
Period size: 19 Copynumber: 3.2 Consensus size: 19
13874004 TAAAACCCCA
*
13874014 AAATGAAACCCTAAACCCT
1 AAATAAAACCCTAAACCCT
*
13874033 AAA-AGTAAA--CTAAAATCCT
1 AAATA--AAACCCT-AAACCCT
13874052 AAATAAAACCCTAAACCCT
1 AAATAAAACCCTAAACCCT
13874071 AAAT
1 AAAT
13874075 TCACGTAAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 12
0.69 0.06 0.25
Matches are distributed among these distances:
18 5 0.15
19 22 0.67
20 6 0.18
ACGTcount: A:0.54, C:0.25, G:0.03, T:0.18
Consensus pattern (19 bp):
AAATAAAACCCTAAACCCT
Found at i:13881837 original size:17 final size:19
Alignment explanation
Indices: 13881804--13881849 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
13881794 ATGGTATTCC
13881804 TTTATCTTTA-TGAGATAT-
1 TTTAT-TTTAGTGAGATATG
13881822 TTTATTTTAGTG-GATATG
1 TTTATTTTAGTGAGATATG
*
13881840 TTTATCTTAG
1 TTTATTTTAG
13881850 ATAATCAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 9 0.36
18 16 0.64
ACGTcount: A:0.24, C:0.04, G:0.15, T:0.57
Consensus pattern (19 bp):
TTTATTTTAGTGAGATATG
Found at i:13885685 original size:8 final size:8
Alignment explanation
Indices: 13885672--13885735 Score: 60
Period size: 8 Copynumber: 8.2 Consensus size: 8
13885662 ATATTTCATT
13885672 GAAAAAAA
1 GAAAAAAA
*
13885680 GAAAAAGA
1 GAAAAAAA
13885688 GAAAAAAA
1 GAAAAAAA
**
13885696 CCAAAAAA
1 GAAAAAAA
*
13885704 GGAAAAAA
1 GAAAAAAA
**
13885712 -AAAAAGT
1 GAAAAAAA
13885719 G-AAAAAA
1 GAAAAAAA
13885726 GAAAAAAA
1 GAAAAAAA
13885734 GA
1 GA
13885736 GCATTCAAAT
Statistics
Matches: 43, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
7 9 0.21
8 34 0.79
ACGTcount: A:0.80, C:0.03, G:0.16, T:0.02
Consensus pattern (8 bp):
GAAAAAAA
Found at i:13885709 original size:14 final size:14
Alignment explanation
Indices: 13885698--13885731 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
13885688 GAAAAAAACC
13885698 AAAAAAG-GAAAAA
1 AAAAAAGTGAAAAA
13885711 AAAAAAGTGAAAAA
1 AAAAAAGTGAAAAA
13885725 AGAAAAA
1 A-AAAAA
13885732 AAGAGCATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.37
14 7 0.37
15 5 0.26
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (14 bp):
AAAAAAGTGAAAAA
Found at i:13885715 original size:21 final size:21
Alignment explanation
Indices: 13885674--13885733 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 21
13885664 ATTTCATTGA
*
13885674 AAAAAAGAAAAAGAGAAAAAAACC
1 AAAAAAG-AAAA-A-AAAAAAGCC
**
13885698 AAAAAAGGAAAAAAAAAAAGTG
1 AAAAAA-GAAAAAAAAAAAGCC
13885720 AAAAAAGAAAAAAA
1 AAAAAAGAAAAAAA
13885734 GAGCATTCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 8 0.25
22 12 0.38
23 1 0.03
24 10 0.31
25 1 0.03
ACGTcount: A:0.82, C:0.03, G:0.13, T:0.02
Consensus pattern (21 bp):
AAAAAAGAAAAAAAAAAAGCC
Found at i:13885733 original size:31 final size:32
Alignment explanation
Indices: 13885674--13885734 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 32
13885664 ATTTCATTGA
*
13885674 AAAAAAGAAAAAGAGAAAAAAACCAAAAAAGG
1 AAAAAAGAAAAAGAGAAAAAAACAAAAAAAGG
* *
13885706 AAAAAA-AAAAAGTG-AAAAAAGAAAAAAAG
1 AAAAAAGAAAAAGAGAAAAAAACAAAAAAAG
13885735 AGCATTCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 13 0.50
31 7 0.27
32 6 0.23
ACGTcount: A:0.80, C:0.03, G:0.15, T:0.02
Consensus pattern (32 bp):
AAAAAAGAAAAAGAGAAAAAAACAAAAAAAGG
Found at i:13886403 original size:15 final size:15
Alignment explanation
Indices: 13886359--13886414 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
13886349 GGCATTTGTA
*
13886359 AAAAAAAAAAGAACA-
1 AAAAAGAAAAGAA-AG
*
13886374 AAAAAGAGAAGAAAG
1 AAAAAGAAAAGAAAG
*
13886389 AAAAAGAAAATAAAG
1 AAAAAGAAAAGAAAG
* *
13886404 GAAAGGAAAAG
1 AAAAAGAAAAG
13886415 GGGCAAATGA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
14 1 0.03
15 32 0.97
ACGTcount: A:0.77, C:0.02, G:0.20, T:0.02
Consensus pattern (15 bp):
AAAAAGAAAAGAAAG
Found at i:13887757 original size:14 final size:15
Alignment explanation
Indices: 13887708--13887746 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
13887698 AATCTTTCAT
13887708 TGAAAAAAAGAAAAA
1 TGAAAAAAAGAAAAA
*
13887723 -GAAAAAAATAAAAA
1 TGAAAAAAAGAAAAA
13887737 GTGAAAAAAA
1 -TGAAAAAAA
13887747 AGGAAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 13 0.62
16 8 0.38
ACGTcount: A:0.79, C:0.00, G:0.13, T:0.08
Consensus pattern (15 bp):
TGAAAAAAAGAAAAA
Found at i:13892761 original size:24 final size:24
Alignment explanation
Indices: 13892692--13892855 Score: 117
Period size: 22 Copynumber: 7.1 Consensus size: 24
13892682 AGGCATAACA
*
13892692 TTTAAAA-TTTTTGAATGACAATC
1 TTTAAAATTTTTTGAATGAGAATC
* * * *
13892715 TTTGAAA--TCTTGGATGTGAATC
1 TTTAAAATTTTTTGAATGAGAATC
13892737 TTTAAAATTTTTTGAATGAGAATC
1 TTTAAAATTTTTTGAATGAGAATC
* *
13892761 TTTAAAA-TCTTT-AATGTGAATC
1 TTTAAAATTTTTTGAATGAGAATC
** * *
13892783 CCTAAAGTTTTTTGAATGAGTATC
1 TTTAAAATTTTTTGAATGAGAATC
* * *
13892807 TTTGAAATTTTAT--ATGTGAATC
1 TTTAAAATTTTTTGAATGAGAATC
* ** *
13892829 TCTAATGTTTTTTTAATGAGAATC
1 TTTAAAATTTTTTGAATGAGAATC
13892853 TTT
1 TTT
13892856 GAATTTCGGA
Statistics
Matches: 104, Mismatches: 31, Indels: 11
0.71 0.21 0.08
Matches are distributed among these distances:
22 45 0.43
23 14 0.13
24 45 0.43
ACGTcount: A:0.32, C:0.08, G:0.13, T:0.46
Consensus pattern (24 bp):
TTTAAAATTTTTTGAATGAGAATC
Found at i:13892761 original size:46 final size:46
Alignment explanation
Indices: 13892694--13892858 Score: 197
Period size: 46 Copynumber: 3.6 Consensus size: 46
13892684 GCATAACATT
* ** *
13892694 TAAAA-TTTTTGAATGACAATCTTTGAAATCTTGGATGTGAATCTT
1 TAAAATTTTTTGAATGAGAATCTTTGAAATCTTAAATGTGAATCTC
* * *
13892739 TAAAATTTTTTGAATGAGAATCTTTAAAATCTTTAATGTGAATCCC
1 TAAAATTTTTTGAATGAGAATCTTTGAAATCTTAAATGTGAATCTC
* * * *
13892785 TAAAGTTTTTTGAATGAGTATCTTTGAAATTTTATATGTGAATCTC
1 TAAAATTTTTTGAATGAGAATCTTTGAAATCTTAAATGTGAATCTC
** *
13892831 TAATGTTTTTTTAATGAGAATCTTTGAA
1 TAAAATTTTTTGAATGAGAATCTTTGAA
13892859 TTTCGGATGT
Statistics
Matches: 103, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
45 5 0.05
46 98 0.95
ACGTcount: A:0.33, C:0.08, G:0.14, T:0.45
Consensus pattern (46 bp):
TAAAATTTTTTGAATGAGAATCTTTGAAATCTTAAATGTGAATCTC
Found at i:13892829 original size:22 final size:22
Alignment explanation
Indices: 13892728--13892829 Score: 71
Period size: 24 Copynumber: 4.5 Consensus size: 22
13892718 GAAATCTTGG
*
13892728 ATGTGAATCTTTAAAATTTTTT
1 ATGTGAATCTTTAAAATTTTAT
*
13892750 GAATGAGAATCTTTAAAATCTTTA-
1 --ATGTGAATCTTTAAAAT-TTTAT
** * *
13892774 ATGTGAATCCCTAAAGTTTTTT
1 ATGTGAATCTTTAAAATTTTAT
* * *
13892796 GAATGAGTATCTTTGAAATTTTAT
1 --ATGTGAATCTTTAAAATTTTAT
13892820 ATGTGAATCT
1 ATGTGAATCT
13892830 CTAATGTTTT
Statistics
Matches: 58, Mismatches: 16, Indels: 10
0.69 0.19 0.12
Matches are distributed among these distances:
21 3 0.05
22 21 0.36
24 31 0.53
25 3 0.05
ACGTcount: A:0.33, C:0.08, G:0.14, T:0.45
Consensus pattern (22 bp):
ATGTGAATCTTTAAAATTTTAT
Found at i:13893173 original size:16 final size:16
Alignment explanation
Indices: 13893101--13893179 Score: 59
Period size: 16 Copynumber: 4.8 Consensus size: 16
13893091 TGTGAGTATG
* *
13893101 AATTCTTGTAAATCCA
1 AATTCTTGCAAATCTA
* *
13893117 AATCCTTGCGAATCTGA
1 AATTCTTGCAAATCT-A
* * * *
13893134 AAATCTTACGAATCTTT
1 AATTCTTGCAAATC-TA
*
13893151 CATTCTTGCAAATCTA
1 AATTCTTGCAAATCTA
13893167 AATTCTTGCAAAT
1 AATTCTTGCAAAT
13893180 ATGAGTGTTT
Statistics
Matches: 47, Mismatches: 14, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
16 24 0.51
17 22 0.47
18 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.37
Consensus pattern (16 bp):
AATTCTTGCAAATCTA
Found at i:13893213 original size:66 final size:66
Alignment explanation
Indices: 13893061--13893214 Score: 173
Period size: 66 Copynumber: 2.3 Consensus size: 66
13893051 AATTCTTACA
** * * * *
13893061 AATATGAAAATCTTGCGAATCTTTCATTCTTGTGAGTATGAATTCTTGTAAATCCAAATCCTTGC
1 AATATGAAAATCTTGCGAATCTTTCATTCTTGCAAATATAAATTCTTGCAAATACAAATCCTTGC
13893126 G
66 G
* * * ** * **
13893127 AATCTGAAAATCTTACGAATCTTTCATTCTTGCAAATCTAAATTCTTGCAAATATGAGTGTTTGC
1 AATATGAAAATCTTGCGAATCTTTCATTCTTGCAAATATAAATTCTTGCAAATACAAATCCTTGC
13893192 G
66 G
*
13893193 AATATGAAAATCTTGTGAATCT
1 AATATGAAAATCTTGCGAATCT
13893215 AAATCTTTGC
Statistics
Matches: 71, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
66 71 1.00
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (66 bp):
AATATGAAAATCTTGCGAATCTTTCATTCTTGCAAATATAAATTCTTGCAAATACAAATCCTTGC
G
Found at i:13894789 original size:16 final size:16
Alignment explanation
Indices: 13894768--13894804 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
13894758 AAAGCAATGC
*
13894768 AAAATCACAAACAAAA
1 AAAATCAAAAACAAAA
*
13894784 AAAATCAAAAACAGAA
1 AAAATCAAAAACAAAA
13894800 AAAAT
1 AAAAT
13894805 AAAGTAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.76, C:0.14, G:0.03, T:0.08
Consensus pattern (16 bp):
AAAATCAAAAACAAAA
Found at i:13895490 original size:16 final size:17
Alignment explanation
Indices: 13895463--13895496 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
13895453 TATTTTTACT
13895463 TTTTATTTTATTCATTA
1 TTTTATTTTATTCATTA
*
13895480 TTTTA-TTTATTTATTA
1 TTTTATTTTATTCATTA
13895496 T
1 T
13895497 GTTAGATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTATTTTATTCATTA
Found at i:13901007 original size:21 final size:21
Alignment explanation
Indices: 13900981--13901023 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
13900971 AGTTAAGAAA
*
13900981 CTCCTTAAGTGTCAATATAAT
1 CTCCTTAAATGTCAATATAAT
*
13901002 CTCCTTAAATGTCAATGTAAT
1 CTCCTTAAATGTCAATATAAT
13901023 C
1 C
13901024 GATTAACACT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.21, G:0.09, T:0.37
Consensus pattern (21 bp):
CTCCTTAAATGTCAATATAAT
Found at i:13903337 original size:59 final size:58
Alignment explanation
Indices: 13903231--13903352 Score: 138
Period size: 59 Copynumber: 2.1 Consensus size: 58
13903221 TTGTTTGGGC
* *
13903231 TTTGGTTACTAATGTGCTAAGTTTTTGTTAGTTAATTAATTGATGAAATTTATTTAGGT
1 TTTGGTTACCAATGTGCTAAGTTTTTGTTAGTT-ATTAATTGATGAAATTTATTTAAGT
* * * * * *
13903290 TTTGGTTACCAATTTGTTAAGTTTTTGTTGGTT-TTATGCTTGTTGAAATTTGTTTAAGT
1 TTTGGTTACCAATGTGCTAAGTTTTTGTTAGTTATTA--ATTGATGAAATTTATTTAAGT
13903349 TTTG
1 TTTG
13903353 ATTATATATT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
57 3 0.06
59 50 0.94
ACGTcount: A:0.22, C:0.04, G:0.20, T:0.54
Consensus pattern (58 bp):
TTTGGTTACCAATGTGCTAAGTTTTTGTTAGTTATTAATTGATGAAATTTATTTAAGT
Found at i:13904179 original size:343 final size:337
Alignment explanation
Indices: 13903538--13904222 Score: 995
Period size: 343 Copynumber: 2.0 Consensus size: 337
13903528 TTAGGTTTTG
* * *
13903538 TTATATATTTATTAACTTTTAAATGTATAAGATTTGGGGTTGGTTAATTTGGGTTTGATGTGTAT
1 TTATATATTTATTAACTTTTAAATGTATAAGATTTAGGGTTGATTAATTTGGGTTTAATGTGTAT
* * *
13903603 TAATACTTATATATTTGTATGGATGTTTTATATTTAATATTTTTTAGATTTTAAGAATAATTATA
66 TAATAATTATATATTTGTATGAATGTTTTATATTTAATATTTTCTAGATTTTAAGAATAATTATA
* *
13903668 GAAATTAAAATTATTTATATTGATTTGAGGTTATAATTTATACATATATATTACTAATAGTTATT
131 GAAATTAAAATTATTTATATTGATTTGAGGTTATAATTTATACATATATAGTACCAATAG-TA-T
*
13903733 TCATTTTGAAGTAAGTTATATATTATTAAGATTTATATTTGTTTTGAAATAGTTTATATATTTGA
194 TCATTTTGAAGTAAGTTAGATATTATTAAGATTTATATTTGTTTTGAAATAGTTTATATATTTGA
*
13903798 TAGTTTCGTAAAATTTATATATTACTAATTATTGAAATATTGT-GGTTTGATTGTATCGATCAAA
259 TAGTTTAGTAAAATTTATATATTACTAATTATTGAAATATTGTAGG-TTGATTGTATCGATCAAA
*
13903862 CCTAACATAAATAAA
323 CCTAACAAAAATAAA
* *
13903877 TTATATATTTATTAACTTTTAGATG-AGTAAGATTTAGGGTTGATTTATTTGGGTTTAATGTGTA
1 TTATATATTTATTAACTTTTAAATGTA-TAAGATTTAGGGTTGATTAATTTGGGTTTAATGTGTA
*
13903941 TTAATATTTATATATATATATATTTGTATGAATGTTTTATATTTAATATTTTCTAGATTTTAATA
65 -T--TA---ATA-AT-TATATATTTGTATGAATGTTTTATATTTAATATTTTCTAGATTTTAAGA
*
13904006 ATAATTATAGAAATTAAAATTATTTATATTGATTTGAGGTTATAATTTATATAT-TACTAGTAGC
122 ATAATTATAGAAATTAAAATTATTTATATTGATTTGAGGTTATAATTTATACATATA-TAGTA-C
*
13904070 CAAT-G-A-TCATTTTGAAGTAAGTTAGATATTATTATGATTTATATTTGTTTTGAAATAGTTTA
185 CAATAGTATTCATTTTGAAGTAAGTTAGATATTATTAAGATTTATATTTGTTTTGAAATAGTTTA
* * * *
13904132 TATATTTGCTAGTTTAGTGAAATTTATGTATTACTAATTATTGAAATATTTTAGGTTGATTGTAT
250 TATATTTGATAGTTTAGTAAAATTTATATATTACTAATTATTGAAATATTGTAGGTTGATTGTAT
* * *
13904197 TGATCAAACTTAATAAAAATAAA
315 CGATCAAACCTAACAAAAATAAA
13904220 TTA
1 TTA
13904223 AATTGTTCTA
Statistics
Matches: 311, Mismatches: 23, Indels: 20
0.88 0.06 0.06
Matches are distributed among these distances:
338 1 0.00
339 57 0.18
340 1 0.00
342 2 0.01
343 133 0.43
344 2 0.01
345 4 0.01
346 3 0.01
347 104 0.33
348 4 0.01
ACGTcount: A:0.35, C:0.03, G:0.13, T:0.49
Consensus pattern (337 bp):
TTATATATTTATTAACTTTTAAATGTATAAGATTTAGGGTTGATTAATTTGGGTTTAATGTGTAT
TAATAATTATATATTTGTATGAATGTTTTATATTTAATATTTTCTAGATTTTAAGAATAATTATA
GAAATTAAAATTATTTATATTGATTTGAGGTTATAATTTATACATATATAGTACCAATAGTATTC
ATTTTGAAGTAAGTTAGATATTATTAAGATTTATATTTGTTTTGAAATAGTTTATATATTTGATA
GTTTAGTAAAATTTATATATTACTAATTATTGAAATATTGTAGGTTGATTGTATCGATCAAACCT
AACAAAAATAAA
Found at i:13907289 original size:21 final size:21
Alignment explanation
Indices: 13907247--13907292 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
13907237 TTATGGAGTA
*
13907247 GTCTGGTTCTAGAGCATAGTG
1 GTCTGGTTCTAGAACATAGTG
*
13907268 GTCTGGTTCT-GAAACATGGTG
1 GTCTGGTTCTAG-AACATAGTG
13907289 GTCT
1 GTCT
13907293 AGGTCTATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 21 0.95
ACGTcount: A:0.17, C:0.15, G:0.33, T:0.35
Consensus pattern (21 bp):
GTCTGGTTCTAGAACATAGTG
Found at i:13908245 original size:20 final size:20
Alignment explanation
Indices: 13908217--13908286 Score: 58
Period size: 20 Copynumber: 3.6 Consensus size: 20
13908207 AACAAATAAT
13908217 AATAGTAATAAAATATATATA
1 AATA-TAATAAAATATATATA
*
13908238 AATATAAT-ATATA-ATA-A
1 AATATAATAAAATATATATA
* * *
13908255 AAAATAATGATATAATATATA
1 AATATAATAAAAT-ATATATA
13908276 AA-ATAATAAAA
1 AATATAATAAAA
13908287 AATGAAAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
17 8 0.20
18 7 0.17
19 5 0.12
20 14 0.34
21 7 0.17
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (20 bp):
AATATAATAAAATATATATA
Found at i:13908246 original size:15 final size:15
Alignment explanation
Indices: 13908223--13908285 Score: 51
Period size: 15 Copynumber: 4.1 Consensus size: 15
13908213 TAATAATAGT
*
13908223 AATAAAATATATATA
1 AATATAATATATATA
13908238 AATATAATATATAATA
1 AATATAATATAT-ATA
13908254 AA-A-AATAATGATATA
1 AATATAAT-AT-ATATA
*
13908269 ATATATAAAATA-ATA
1 A-ATATAATATATATA
13908284 AA
1 AA
13908286 AAATGAAAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 13
0.73 0.04 0.24
Matches are distributed among these distances:
14 4 0.10
15 22 0.55
16 9 0.22
17 3 0.08
18 2 0.05
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (15 bp):
AATATAATATATATA
Found at i:13908252 original size:27 final size:25
Alignment explanation
Indices: 13908203--13908276 Score: 78
Period size: 25 Copynumber: 2.8 Consensus size: 25
13908193 TCGAAAAGCC
*
13908203 AAATAACAA-ATAATAATAGTAATAAA
1 AAATAATAATATAAT-ATA-TAATAAA
*
13908229 ATATATATAAATATAATATATAATAAA
1 AAATA-AT-AATATAATATATAATAAA
*
13908256 AAATAATGATATAATATATAA
1 AAATAATAATATAATATATAA
13908277 AATAATAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
25 13 0.32
26 6 0.15
27 12 0.29
28 5 0.12
29 5 0.12
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (25 bp):
AAATAATAATATAATATATAATAAA
Found at i:13908280 original size:27 final size:25
Alignment explanation
Indices: 13908239--13908291 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 25
13908229 ATATATATAA
13908239 ATATAATATATAATAA-AAAATAATG
1 ATATAATATATAATAATAAAA-AATG
13908264 ATATAATATATAAAATAATAAAAAATG
1 ATATAATATAT--AATAATAAAAAATG
13908291 A
1 A
13908292 AAATTTTGGC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 11 0.44
27 10 0.40
28 4 0.16
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (25 bp):
ATATAATATATAATAATAAAAAATG
Found at i:13908282 original size:30 final size:28
Alignment explanation
Indices: 13908212--13908289 Score: 95
Period size: 30 Copynumber: 2.6 Consensus size: 28
13908202 CAAATAACAA
*
13908212 ATAATAATAGTAATAAAATATATATAAAT
1 ATAATAATAATAA-AAAATATATATAAAT
13908241 ATAATATATAATAAAAAATAATGATATAATAT
1 ATAATA-ATAATAAAAAAT-AT-ATATAA-AT
13908273 ATAA-AATAATAAAAAAT
1 ATAATAATAATAAAAAAT
13908290 GAAAATTTTG
Statistics
Matches: 44, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
29 11 0.25
30 20 0.45
31 7 0.16
32 6 0.14
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (28 bp):
ATAATAATAATAAAAAATATATATAAAT
Found at i:13908295 original size:36 final size:35
Alignment explanation
Indices: 13908203--13908331 Score: 98
Period size: 36 Copynumber: 3.6 Consensus size: 35
13908193 TCGAAAAGCC
* * * *
13908203 AAATAACAAATAATAATAGTAATAAAAT-ATATATA
1 AAATAATAAATAATAA-AATAATGACATAATATATA
* *
13908238 AATATAATATATAATAAAAAATAATGATATAATATATA
1 AA-ATAATAAATAAT--AAAATAATGACATAATATATA
* ** * * *
13908276 AAATAATAAAAAATGAAAATTTTGGCCTAATAAATA
1 AAATAATAAATAAT-AAAATAATGACATAATATATA
13908312 AAATAATAAATAATAAAATA
1 AAATAATAAATAATAAAATA
13908332 TATAAAAAGA
Statistics
Matches: 74, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
35 7 0.09
36 38 0.51
37 18 0.24
38 11 0.15
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.29
Consensus pattern (35 bp):
AAATAATAAATAATAAAATAATGACATAATATATA
Found at i:13908326 original size:15 final size:16
Alignment explanation
Indices: 13908308--13908337 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
13908298 TGGCCTAATA
13908308 AATAAAATA-ATAAAT
1 AATAAAATATATAAAT
13908323 AATAAAATATATAAA
1 AATAAAATATATAAA
13908338 AAGAAATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
AATAAAATATATAAAT
Found at i:13915815 original size:3 final size:3
Alignment explanation
Indices: 13915807--13915859 Score: 79
Period size: 3 Copynumber: 17.3 Consensus size: 3
13915797 TATTTTCAAT
**
13915807 TAA TAA TAA TAAA TAA CCA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
13915853 TAA TAA T
1 TAA TAA T
13915860 GTCTTTCTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
3 42 0.93
4 3 0.07
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:13916028 original size:3 final size:3
Alignment explanation
Indices: 13916022--13916057 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
13916012 ATTAATAATA
*
13916022 ATG ATG ATG ATG ATG AATG ATG ATA ATG ATG ATG AT
1 ATG ATG ATG ATG ATG -ATG ATG ATG ATG ATG ATG AT
13916058 AAAATGATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.39, C:0.00, G:0.28, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:13916040 original size:16 final size:16
Alignment explanation
Indices: 13916021--13916071 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 16
13916011 TATTAATAAT
*
13916021 AATGATGATGATGATG
1 AATGATGATAATGATG
13916037 AATGATGATAATGATG
1 AATGATGATAATGATG
* *
13916053 -ATGAT-AAAATGATT
1 AATGATGATAATGATG
13916067 AATGA
1 AATGA
13916072 AAATAAGTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
14 7 0.23
15 9 0.29
16 15 0.48
ACGTcount: A:0.45, C:0.00, G:0.24, T:0.31
Consensus pattern (16 bp):
AATGATGATAATGATG
Found at i:13916374 original size:37 final size:38
Alignment explanation
Indices: 13916311--13916382 Score: 103
Period size: 37 Copynumber: 1.9 Consensus size: 38
13916301 ATAGAAACCT
*
13916311 TAAGTGAAACCCTAAACTTTAAGTAAAAC-TGAGATCC
1 TAAGTGAAACCCTAAACTCTAAGTAAAACTTGAGATCC
*
13916348 TAAGTGAAACCCTAAA-TCCTAGGTAAAACTTGAGA
1 TAAGTGAAACCCTAAACT-CTAAGTAAAACTTGAGA
13916383 CCTCAAAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
36 1 0.03
37 25 0.81
38 5 0.16
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.24
Consensus pattern (38 bp):
TAAGTGAAACCCTAAACTCTAAGTAAAACTTGAGATCC
Found at i:13921410 original size:15 final size:15
Alignment explanation
Indices: 13921381--13921420 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 15
13921371 GAAATGCCTT
13921381 AAAAAAAAAGAGGAA
1 AAAAAAAAAGAGGAA
13921396 AAAAATAAAAG-GGAA
1 AAAAA-AAAAGAGGAA
13921411 AAATAAAAAA
1 AAA-AAAAAA
13921421 AATAAAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 16 0.70
16 7 0.30
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.05
Consensus pattern (15 bp):
AAAAAAAAAGAGGAA
Found at i:13921423 original size:9 final size:9
Alignment explanation
Indices: 13921409--13921454 Score: 51
Period size: 9 Copynumber: 5.2 Consensus size: 9
13921399 AATAAAAGGG
13921409 AAAAATAAA
1 AAAAATAAA
13921418 AAAAAT-AA
1 AAAAATAAA
*
13921426 AGAAATAAA
1 AAAAATAAA
*
13921435 AGAAATAAA
1 AAAAATAAA
13921444 AGAAAA-AAA
1 A-AAAATAAA
13921453 AA
1 AA
13921455 GAAAGTTTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
8 8 0.24
9 22 0.67
10 3 0.09
ACGTcount: A:0.85, C:0.00, G:0.07, T:0.09
Consensus pattern (9 bp):
AAAAATAAA
Found at i:13921431 original size:17 final size:18
Alignment explanation
Indices: 13921411--13921454 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
13921401 TAAAAGGGAA
13921411 AAATAAAAAAAAT-AAAG
1 AAATAAAAAAAATAAAAG
*
13921428 AAATAAAAGAAATAAAAG
1 AAATAAAAAAAATAAAAG
13921446 AAA-AAAAAA
1 AAATAAAAAA
13921455 GAAAGTTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 17 0.71
18 7 0.29
ACGTcount: A:0.84, C:0.00, G:0.07, T:0.09
Consensus pattern (18 bp):
AAATAAAAAAAATAAAAG
Found at i:13922985 original size:3 final size:3
Alignment explanation
Indices: 13922930--13922972 Score: 61
Period size: 3 Copynumber: 14.7 Consensus size: 3
13922920 ATTTTCAATT
* *
13922930 ATA ATA AAA ATA AAA AT- ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
13922973 TTTTAAATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:13923078 original size:3 final size:3
Alignment explanation
Indices: 13923072--13923140 Score: 52
Period size: 3 Copynumber: 21.7 Consensus size: 3
13923062 AGAATTATTA
*
13923072 AAT AAT AAA AAT GAA- AAT AA- AGAT AAAT AAAT AATT AAT AAAT AAT
1 AAT AAT AAT AAT -AAT AAT AAT A-AT A-AT A-AT AA-T AAT -AAT AAT
*
13923118 AAT AAT AAT AAT AAT AAT GAT AA
1 AAT AAT AAT AAT AAT AAT AAT AA
13923141 AATGATTAAT
Statistics
Matches: 55, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
2 3 0.05
3 36 0.65
4 16 0.29
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:13923991 original size:16 final size:17
Alignment explanation
Indices: 13923960--13923992 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
13923950 GAAAGTCACC
13923960 AATAATTATCATTTTTA
1 AATAATTATCATTTTTA
*
13923977 AATAA-TATTATTTTTA
1 AATAATTATCATTTTTA
13923993 TTTTTATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (17 bp):
AATAATTATCATTTTTA
Found at i:13929110 original size:30 final size:29
Alignment explanation
Indices: 13929050--13929110 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
13929040 AACAAACTAT
*
13929050 AAATAACTAAAACATACACAACCAAAATC
1 AAATAACTAAAACATACAAAACCAAAATC
* * *
13929079 AAATAACTAAGATATATCAAAACCGAAATC
1 AAATAACTAAAACATA-CAAAACCAAAATC
13929109 AA
1 AA
13929111 CTAAGCAACT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 14 0.52
30 13 0.48
ACGTcount: A:0.61, C:0.20, G:0.03, T:0.16
Consensus pattern (29 bp):
AAATAACTAAAACATACAAAACCAAAATC
Found at i:13930795 original size:10 final size:10
Alignment explanation
Indices: 13930780--13930825 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
13930770 AATAATCATC
13930780 CAAGAATTAT
1 CAAGAATTAT
*
13930790 CAAGAAAT-T
1 CAAGAATTAT
*
13930799 CAAGAATGAT
1 CAAGAATTAT
*
13930809 CAAGAATTAC
1 CAAGAATTAT
13930819 CAAGAAT
1 CAAGAAT
13930826 CATTATTTTC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
9 7 0.23
10 23 0.77
ACGTcount: A:0.52, C:0.13, G:0.13, T:0.22
Consensus pattern (10 bp):
CAAGAATTAT
Found at i:13939145 original size:13 final size:12
Alignment explanation
Indices: 13939127--13939157 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
13939117 AAACTAAAAA
13939127 AAAAAAACTAATG
1 AAAAAAACTAA-G
13939140 AAAAAAACTAAG
1 AAAAAAACTAAG
13939152 AAAAAA
1 AAAAAA
13939158 GAAAGGGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.39
13 11 0.61
ACGTcount: A:0.77, C:0.06, G:0.06, T:0.10
Consensus pattern (12 bp):
AAAAAAACTAAG
Found at i:13946074 original size:18 final size:18
Alignment explanation
Indices: 13946051--13946087 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
13946041 ATGTATGAGA
13946051 CCTTAAATTCAATATGTG
1 CCTTAAATTCAATATGTG
*
13946069 CCTTAAATTCACTATGTG
1 CCTTAAATTCAATATGTG
13946087 C
1 C
13946088 AATGTACCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.38
Consensus pattern (18 bp):
CCTTAAATTCAATATGTG
Found at i:13952475 original size:22 final size:22
Alignment explanation
Indices: 13952450--13952512 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 22
13952440 TAACATCTTC
*
13952450 TTATAGTAACATGTACATATAA
1 TTATAATAACATGTACATATAA
* * *
13952472 TTATACTAACATGTACATGTAT
1 TTATAATAACATGTACATATAA
* *
13952494 TTACAATAAAATGTACATA
1 TTATAATAACATGTACATA
13952513 ATCATCAAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.44, C:0.11, G:0.08, T:0.37
Consensus pattern (22 bp):
TTATAATAACATGTACATATAA
Found at i:13955487 original size:126 final size:125
Alignment explanation
Indices: 13955226--13955539 Score: 373
Period size: 127 Copynumber: 2.5 Consensus size: 125
13955216 TTCTTAATTA
* * * * * * *
13955226 ATTAATTTTTCTTTTTAGACTAATCATTATATATTTGTATTTGAAGGGACTTTTTTCAAATTTCC
1 ATTATTTTTTCTTATTAGACTAATCAATAAATATTTTTATTTGAA-GCACCTTTTTCAAATTTCC
** * * * *
13955291 CCAAGTATCGGCATTTGTTCCAGAACAGTTGTTTCTTTCCCATAGTTTGCTTATTTGAACC
65 CCAAGTATCAACATTTATTCCAGAACAGTTATTTCTTTCACATAATTTGCTTATTTGAACC
*
13955352 GTTATTTTTTCTTATTAGACTAATCAATAAATATTTTTATTTGAAGCAACCTTTTTCAAATTTCC
1 ATTATTTTTTCTTATTAGACTAATCAATAAATATTTTTATTTGAAGC-ACCTTTTTCAAATTTCC
* * * *
13955417 TCAA-TATCAACATTTATT-CATTAATTA-TTATTGATCTTTCACATAATTTGCTTATTTGAAGC
65 CCAAGTATCAACATTTATTCCA-GAA-CAGTTATT--TCTTTCACATAATTTGCTTATTTGAACC
*
13955479 ATTATTTTTTCTTATTACACTAATCAATAAATATTTTTATTTGAAGGCACCTTTTTCAAAT
1 ATTATTTTTTCTTATTAGACTAATCAATAAATATTTTTATTTGAA-GCACCTTTTTCAAAT
13955540 GCCCCCTAAA
Statistics
Matches: 162, Mismatches: 20, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
124 2 0.01
125 18 0.11
126 59 0.36
127 81 0.50
128 2 0.01
ACGTcount: A:0.29, C:0.15, G:0.09, T:0.47
Consensus pattern (125 bp):
ATTATTTTTTCTTATTAGACTAATCAATAAATATTTTTATTTGAAGCACCTTTTTCAAATTTCCC
CAAGTATCAACATTTATTCCAGAACAGTTATTTCTTTCACATAATTTGCTTATTTGAACC
Found at i:13959919 original size:22 final size:23
Alignment explanation
Indices: 13959894--13959941 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 23
13959884 GTCAATTTCT
13959894 TAATTTATTATTTCCTTTTA-AC
1 TAATTTATTATTTCCTTTTAGAC
* *
13959916 TAA-TTATTTTTTCTTTTTAGAC
1 TAATTTATTATTTCCTTTTAGAC
13959938 TAAT
1 TAAT
13959942 CAATAAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.27, C:0.10, G:0.02, T:0.60
Consensus pattern (23 bp):
TAATTTATTATTTCCTTTTAGAC
Found at i:13960158 original size:126 final size:126
Alignment explanation
Indices: 13959918--13960231 Score: 382
Period size: 126 Copynumber: 2.5 Consensus size: 126
13959908 CTTTTAACTA
* * * *
13959918 ATTATTTTTTCTTTTTAGACTAATCAATAAATATTTGTATTTGAAGGGACTTTTTTCAAATTTCC
1 ATTATTTTTTCTTATTAGACTAATCAATAAATATTTCTATTTGAAGGAACCTTTTTCAAATTTCC
*** * * * *
13959983 CCAAGTATTGGCATTTGTTCCAAAACTGTTGTTTCTTTCCCATAGTTTGCTTATTTGAACC
66 CCAAGTATCAACATTTATTCCAAAACTATTGTTTCTTTCACATAATTTGCTTATTTGAACC
* *
13960044 ATTATTTTTTCTTATTAGACTAATCAATAAATATTTTTATTTGAAGAAACCTTTTTCAAATTTCC
1 ATTATTTTTTCTTATTAGACTAATCAATAAATATTTCTATTTGAAGGAACCTTTTTCAAATTTCC
* * * * *
13960109 TCAA-TATCAATATTTATT-CATTAATTATTGTGATT-TTTCATATAATTTGCTTATTTGAACC
66 CCAAGTATCAACATTTATTCCA-AAACTATTGT--TTCTTTCACATAATTTGCTTATTTGAACC
* * *
13960170 ATTATTTTTTTCTTATTACACTAATTAATAAATATTTCTATTTGAAGGCACCTTTTTCAAAT
1 ATTA-TTTTTTCTTATTAGACTAATCAATAAATATTTCTATTTGAAGGAACCTTTTTCAAAT
13960232 ACCCCTAAAA
Statistics
Matches: 162, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
124 2 0.01
125 16 0.10
126 90 0.56
127 54 0.33
ACGTcount: A:0.30, C:0.14, G:0.08, T:0.49
Consensus pattern (126 bp):
ATTATTTTTTCTTATTAGACTAATCAATAAATATTTCTATTTGAAGGAACCTTTTTCAAATTTCC
CCAAGTATCAACATTTATTCCAAAACTATTGTTTCTTTCACATAATTTGCTTATTTGAACC
Found at i:13960266 original size:127 final size:124
Alignment explanation
Indices: 13959918--13960302 Score: 362
Period size: 126 Copynumber: 3.0 Consensus size: 124
13959908 CTTTTAACTA
* * * *
13959918 ATTATTTTTTCTTTTTAGACTAATCAATAAATATTTGTATTTGAAGGGACTTTTTTCAAATTTCC
1 ATTATTTTTTCTTATTAGACTAATCAATAAATATTTCTATTTGAAGGAACCTTTTTCAAA--TCC
* * * * * * *
13959983 CC-AAGTATTGGCATTTGTTCCAA-AACTGTTGTTTCTTTCCCATAGTTTGCTTATTTGAACC
64 CCTAAATATCGACATTTGTT-CAATAATTG-TGATTCTTTCACATAATTTGCTTATTTGAACC
* * **
13960044 ATTATTTTTTCTTATTAGACTAATCAATAAATATTTTTATTTGAAGAAACCTTTTTCAAATTTCC
1 ATTATTTTTTCTTATTAGACTAATCAATAAATATTTCTATTTGAAGGAACCTTTTTCAAATCCCC
* * * * * *
13960109 TCAATATCAATATTTATTCATTAATTATTGTGATT-TTTCATATAATTTGCTTATTTGAACC
66 TAAATATCGACATTTGTTC---AATAATTGTGATTCTTTCACATAATTTGCTTATTTGAACC
* * *
13960170 ATTATTTTTTTCTTATTACACTAATTAATAAATATTTCTATTTGAAGGCACCTTTTTCAAATACC
1 ATTA-TTTTTTCTTATTAGACTAATCAATAAATATTTCTATTTGAAGGAACCTTTTTCAAAT-CC
* * * * *
13960235 CCTAAAATATCGACACTTTGTTCAATAATTGTTGTTGATCTTTCCCATAATTTTCTCATTTGACC
64 CCT-AAATATCGACA-TTTGTTCAATAATTG-TGAT--TCTTTCACATAATTTGCTTATTTGAAC
13960300 C
124 C
13960301 AT
1 AT
13960303 CCTTTGAAAC
Statistics
Matches: 208, Mismatches: 38, Indels: 21
0.78 0.14 0.08
Matches are distributed among these distances:
124 4 0.02
125 10 0.05
126 82 0.39
127 65 0.31
128 9 0.04
129 8 0.04
130 7 0.03
131 23 0.11
ACGTcount: A:0.29, C:0.16, G:0.08, T:0.47
Consensus pattern (124 bp):
ATTATTTTTTCTTATTAGACTAATCAATAAATATTTCTATTTGAAGGAACCTTTTTCAAATCCCC
TAAATATCGACATTTGTTCAATAATTGTGATTCTTTCACATAATTTGCTTATTTGAACC
Found at i:13969838 original size:17 final size:17
Alignment explanation
Indices: 13969816--13969849 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
13969806 AATACCATAT
13969816 TCAAGAATTCACTAAAC
1 TCAAGAATTCACTAAAC
13969833 TCAAGAATTCACTAAAC
1 TCAAGAATTCACTAAAC
13969850 CTAAGTATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.24, G:0.06, T:0.24
Consensus pattern (17 bp):
TCAAGAATTCACTAAAC
Found at i:13978606 original size:21 final size:21
Alignment explanation
Indices: 13978581--13978620 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
13978571 TCTAGAACAT
*
13978581 TCTTCAATTCTAGCATGCTCC
1 TCTTCAAGTCTAGCATGCTCC
* *
13978602 TCTTCTAGTCTGGCATGCT
1 TCTTCAAGTCTAGCATGCT
13978621 TTACTCCTCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.15, C:0.30, G:0.15, T:0.40
Consensus pattern (21 bp):
TCTTCAAGTCTAGCATGCTCC
Found at i:13982092 original size:26 final size:28
Alignment explanation
Indices: 13982050--13982103 Score: 69
Period size: 26 Copynumber: 2.0 Consensus size: 28
13982040 TTCTTTAGAT
*
13982050 CAATGAAATAATGAATC-AATG-ATTTA
1 CAATGAAATAATCAATCAAATGTATTTA
13982076 CAATG-AATAGATCAATCAAATGTATTTA
1 CAATGAAATA-ATCAATCAAATGTATTTA
13982104 AGTAGACCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 4 0.17
26 11 0.46
27 4 0.17
28 5 0.21
ACGTcount: A:0.48, C:0.09, G:0.11, T:0.31
Consensus pattern (28 bp):
CAATGAAATAATCAATCAAATGTATTTA
Found at i:13984722 original size:19 final size:20
Alignment explanation
Indices: 13984686--13984728 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
13984676 TTTCCTAGAT
*
13984686 ATTTTTTCAAATACAATAAA
1 ATTTTTTCAAAGACAATAAA
* *
13984706 ATTTTTTGAAAGA-AATAAT
1 ATTTTTTCAAAGACAATAAA
13984725 ATTT
1 ATTT
13984729 ATTTAGTACC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.44
Consensus pattern (20 bp):
ATTTTTTCAAAGACAATAAA
Found at i:13987592 original size:20 final size:20
Alignment explanation
Indices: 13987559--13987603 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
13987549 CCTTTTACTC
13987559 CATAG-TTTTTTTCT-TGCG
1 CATAGTTTTTTTTCTATGCG
13987577 CATAGTTTTCTTTTCTATGCG
1 CATAGTTTT-TTTTCTATGCG
13987598 -ATAGTT
1 CATAGTT
13987604 AAGGCTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.21
19 3 0.12
20 12 0.50
21 4 0.17
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.53
Consensus pattern (20 bp):
CATAGTTTTTTTTCTATGCG
Found at i:13990007 original size:31 final size:32
Alignment explanation
Indices: 13989958--13990021 Score: 78
Period size: 31 Copynumber: 2.0 Consensus size: 32
13989948 GTGGCAAATG
*
13989958 AGGGACCCAAAATAAAATTCTCT-AAAAGTTT
1 AGGGACCCAAAATAAAATTATCTCAAAAGTTT
* *
13989989 AGGGA-CCAAAGATGAAATTATCTCAAAATTTT
1 AGGGACCCAAA-ATAAAATTATCTCAAAAGTTT
13990021 A
1 A
13990022 TATATTTCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 5 0.18
31 15 0.54
32 8 0.29
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.27
Consensus pattern (32 bp):
AGGGACCCAAAATAAAATTATCTCAAAAGTTT
Found at i:13990412 original size:15 final size:15
Alignment explanation
Indices: 13990369--13990415 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
13990359 AAAATTATTC
13990369 TTATATATTTAAAATA
1 TTATA-ATTTAAAATA
*
13990385 -TAT-TTTATAAAATA
1 TTATAATT-TAAAATA
13990399 TTATAATTTAAAATA
1 TTATAATTTAAAATA
13990414 TT
1 TT
13990416 TTTAATTGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
13 2 0.08
14 7 0.27
15 15 0.58
16 2 0.08
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TTATAATTTAAAATA
Found at i:13990738 original size:14 final size:14
Alignment explanation
Indices: 13990721--13990751 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
13990711 TTTTTTTCTT
13990721 TTTTATAAAACATA
1 TTTTATAAAACATA
*
13990735 TTTTATAAAATATA
1 TTTTATAAAACATA
13990749 TTT
1 TTT
13990752 AAAAAGGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTTATAAAACATA
Found at i:13994453 original size:13 final size:13
Alignment explanation
Indices: 13994435--13994472 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
13994425 TTCATCAATT
13994435 CCTAAAGTGAAAC
1 CCTAAAGTGAAAC
**
13994448 CCTAAAACGAAAC
1 CCTAAAGTGAAAC
13994461 CCTAAAGTGAAA
1 CCTAAAGTGAAA
13994473 ACTAAAGTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.50, C:0.24, G:0.13, T:0.13
Consensus pattern (13 bp):
CCTAAAGTGAAAC
Found at i:13994580 original size:19 final size:19
Alignment explanation
Indices: 13994487--13994583 Score: 60
Period size: 19 Copynumber: 5.3 Consensus size: 19
13994477 AAGTAAAATT
**
13994487 CTAAACCCTAGAAGAAACC
1 CTAAACCCTAGGTGAAACC
* *
13994506 CAAAAGCACTA-GTGAAACC
1 CTAAA-CCCTAGGTGAAACC
* *
13994525 TTAAA-CC-A--TGAAGCC
1 CTAAACCCTAGGTGAAACC
* ** *
13994540 CAAAACCCTAGGCAAAATC
1 CTAAACCCTAGGTGAAACC
13994559 CTAAACCCTAGGTGAAACC
1 CTAAACCCTAGGTGAAACC
13994578 CTAAAC
1 CTAAAC
13994584 GAAAACCTCA
Statistics
Matches: 55, Mismatches: 18, Indels: 10
0.66 0.22 0.12
Matches are distributed among these distances:
15 9 0.16
16 3 0.05
17 2 0.04
19 37 0.67
20 4 0.07
ACGTcount: A:0.44, C:0.30, G:0.12, T:0.13
Consensus pattern (19 bp):
CTAAACCCTAGGTGAAACC
Found at i:13995585 original size:24 final size:25
Alignment explanation
Indices: 13995558--13995605 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
13995548 TCATCAATGA
*
13995558 TTATTA-TTTACAAAGAGTGTTATT
1 TTATTATTTTACAAAGAATGTTATT
*
13995582 TTATTATTTTAGAAAGAATGTTAT
1 TTATTATTTTACAAAGAATGTTAT
13995606 GATAAATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.35, C:0.02, G:0.12, T:0.50
Consensus pattern (25 bp):
TTATTATTTTACAAAGAATGTTATT
Found at i:14001107 original size:82 final size:82
Alignment explanation
Indices: 14001017--14001174 Score: 212
Period size: 82 Copynumber: 1.9 Consensus size: 82
14001007 TCGAGCTTTT
* *
14001017 TTTGAAATATGCCCA-TCAGTG-AAAAATTAAATTGACAATCACCCCATCCACAAGCATTCTAAA
1 TTTGAAATATGCCCACT-AGTGAAAAAATTAAATTGACAATCACACCATCCAC-AGCATTCCAAA
14001080 TAGTAATCATCAAGCCTTC
64 TAGTAATCATCAAGCCTTC
* * * *
14001099 TTTGAAATATGTCCACTAGTGAAAAAATTGAATTGTCAATCACACCATCCACAGCCTTCCAAATA
1 TTTGAAATATGCCCACTAGTGAAAAAATTAAATTGACAATCACACCATCCACAGCATTCCAAATA
**
14001164 GTGGTCATCAA
66 GTAATCATCAA
14001175 TTTGTAAGAG
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
82 38 0.58
83 28 0.42
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.27
Consensus pattern (82 bp):
TTTGAAATATGCCCACTAGTGAAAAAATTAAATTGACAATCACACCATCCACAGCATTCCAAATA
GTAATCATCAAGCCTTC
Found at i:14002187 original size:36 final size:36
Alignment explanation
Indices: 14002134--14002216 Score: 109
Period size: 36 Copynumber: 2.3 Consensus size: 36
14002124 AAAACTTTAT
14002134 TCTTTATCTTTTCGACCATGGGTGTTATCCC-ATTCA
1 TCTTTATCTTTTCGACCATGGGTGTTATCCCGA-TCA
* *
14002170 TCTTTAT-TTTTCTGACCATTGTTGTTATCCCGATCA
1 TCTTTATCTTTTC-GACCATGGGTGTTATCCCGATCA
14002206 TC-TTATCTTTT
1 TCTTTATCTTTT
14002217 AGACAATTAA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
35 9 0.21
36 32 0.76
37 1 0.02
ACGTcount: A:0.16, C:0.23, G:0.11, T:0.51
Consensus pattern (36 bp):
TCTTTATCTTTTCGACCATGGGTGTTATCCCGATCA
Found at i:14002510 original size:35 final size:35
Alignment explanation
Indices: 14002401--14002780 Score: 147
Period size: 36 Copynumber: 10.7 Consensus size: 35
14002391 CGATTAGTGG
* * * *
14002401 TGTTATC-CTAGTCATCTTTATTTTTCTGACCTACGG
1 TGTTATCTC-AGTCATTTTTATTTTT-TAACCTATGA
* *
14002437 TGTTAT-TCTGGTCATCTTTATTTTTTAA-CTA-GCAA
1 TGTTATCTC-AGTCATTTTTATTTTTTAACCTATG--A
* * *
14002472 TGTTATCTCAATCATTTTTATTTTTCAACCTATTA
1 TGTTATCTCAGTCATTTTTATTTTTTAACCTATGA
* * * * * *
14002507 TGTTTTTTCGGTTATATTTATTTTTTTAACCGT-TGG
1 TGTTATCTCAGTCATTTTTA-TTTTTTAACC-TATGA
* * * *
14002543 TGTTATCTCAGTCATCTCTATTTTTTGACCTACGA
1 TGTTATCTCAGTCATTTTTATTTTTTAACCTATGA
* * *
14002578 TGTTATCTCAGTCATTTTTATTTTTTGACTTTATGG
1 TGTTATCTCAGTCATTTTTATTTTTTAAC-CTATGA
* * * ** *
14002614 TGTTATCCTTA-TCATATTTGTTTTCCCAACC-ATTGG
1 TGTTAT-CTCAGTCATTTTTATTTT-TTAACCTA-TGA
* * * * *
14002650 TGTTATC-CTAATCATTTTTATTTTTTGACATGTGG
1 TGTTATCTC-AGTCATTTTTATTTTTTAACCTATGA
* * *
14002685 TGTTATC-CCGATCATTTTTA-TTTTTGACTTACT-A
1 TGTTATCTCAG-TCATTTTTATTTTTTAACCTA-TGA
* * **
14002719 TGTTATCT-AGGTCATTTTTGTTTCTTTGACCTACAA
1 TGTTATCTCA-GTCATTTTTATTT-TTTAACCTATGA
*
14002755 TGTTATCAC-GATCATTTTTATTTTTT
1 TGTTATCTCAG-TCATTTTTATTTTTT
14002781 TTAGTTGTAA
Statistics
Matches: 262, Mismatches: 57, Indels: 51
0.71 0.15 0.14
Matches are distributed among these distances:
33 1 0.00
34 28 0.11
35 108 0.41
36 119 0.45
37 6 0.02
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.53
Consensus pattern (35 bp):
TGTTATCTCAGTCATTTTTATTTTTTAACCTATGA
Found at i:14002581 original size:71 final size:69
Alignment explanation
Indices: 14002398--14002608 Score: 171
Period size: 71 Copynumber: 3.0 Consensus size: 69
14002388 TTTCGATTAG
* *
14002398 TGGTGTTATC-CTAGTCATCTTTATTTTTCTGACCTACGGTG-TTATTCTGGTCATCTTTATTTT
1 TGGTGTTATCTC-AGTCATCTTTATTTTT-TGACCTACGATGTTTATTCTGGTCATATTTATTTT
14002461 TTAACT
64 TTAACT
* * * * ** ** * *
14002467 AGCAATGTTATCTCAATCATTTTTATTTTTCAACCTATTATGTTTTTTC-GGTTATATTTATTTT
1 TG--GTGTTATCTCAGTCATCTTTATTTTTTGACCTACGATGTTTATTCTGGTCATATTTA-TTT
14002531 TTTAACCGT
63 TTTAA-C-T
* * *
14002540 TGGTGTTATCTCAGTCATCTCTATTTTTTGACCTACGATG-TTA-TCTCAGTCATTTTTATTTTT
1 TGGTGTTATCTCAGTCATCTTTATTTTTTGACCTACGATGTTTATTCT-GGTCATATTTATTTTT
*
14002603 TGACT
65 TAACT
14002608 T
1 T
14002609 TATGGTGTTA
Statistics
Matches: 107, Mismatches: 26, Indels: 19
0.70 0.17 0.12
Matches are distributed among these distances:
68 2 0.02
69 4 0.04
70 25 0.23
71 72 0.67
72 2 0.02
73 2 0.02
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.53
Consensus pattern (69 bp):
TGGTGTTATCTCAGTCATCTTTATTTTTTGACCTACGATGTTTATTCTGGTCATATTTATTTTTT
AACT
Found at i:14002937 original size:35 final size:36
Alignment explanation
Indices: 14002893--14002962 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 36
14002883 TTTTTCAATA
* ** *
14002893 TGCATTATTGACCTGATCATCTTTATTTT-TTGACT
1 TGCAATATTGACCCAATCATATTTATTTTCTTGACT
*
14002928 TGCAATATTGGCCCAATCATATTTATTTTCTTGAC
1 TGCAATATTGACCCAATCATATTTATTTTCTTGAC
14002963 CATTGGTGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
35 24 0.83
36 5 0.17
ACGTcount: A:0.23, C:0.19, G:0.11, T:0.47
Consensus pattern (36 bp):
TGCAATATTGACCCAATCATATTTATTTTCTTGACT
Found at i:14003269 original size:36 final size:36
Alignment explanation
Indices: 14003156--14003803 Score: 250
Period size: 36 Copynumber: 18.3 Consensus size: 36
14003146 CTTGGTTGTC
* **
14003156 TTTA-TTTTTTGACTTACAGTGTTGTCAT-GATCATT
1 TTTATTTTTTTGACCTATGGTGTTGTC-TCGATCATT
* ** * *
14003191 TTTATTATTTTGAATTATGATGTTGTCCCGATCATT
1 TTTATTTTTTTGACCTATGGTGTTGTCTCGATCATT
14003227 TTTATTTTTTTGACCTATGGTGTTGTCTCGATCATT
1 TTTATTTTTTTGACCTATGGTGTTGTCTCGATCATT
*** * * * * *
14003263 TTTA-TTTTCCAACTTACGG-GATTTTTTCGATCATA
1 TTTATTTTTTTGACCTATGGTG-TTGTCTCGATCATT
* * *
14003298 TTTA-TTTTTT-ACCTATGGTGTTGTCTTGGTCATC
1 TTTATTTTTTTGACCTATGGTGTTGTCTCGATCATT
* * * **
14003332 TTTATTTTTTTGAGCTACGGTGTTAT-TTTAGTCATT
1 TTTATTTTTTTGACCTATGGTGTTGTCTCGA-TCATT
* * * *
14003368 TTTA-TTTTTTGACTTGTGGTGTTCG-CTCGGTCATA
1 TTTATTTTTTTGACCTATGGTGTT-GTCTCGATCATT
* * * * *** * * *
14003403 TTTAGTTCTCTGGCCTACAATATTATTTCGATCATT
1 TTTATTTTTTTGACCTATGGTGTTGTCTCGATCATT
* * * * * *
14003439 TTTA-TTTTTTGACTTGTTGTGTTATCTAGATCATA
1 TTTATTTTTTTGACCTATGGTGTTGTCTCGATCATT
* *
14003474 TTTATTTTTTTGA--TAGTTGGTGTTGTCCCGATCATC
1 TTTATTTTTTTGACCTA--TGGTGTTGTCTCGATCATT
* *
14003510 TTTATTTTTTTGACTTATGGTGTTATCT-GAGTCATT
1 TTTATTTTTTTGACCTATGGTGTTGTCTCGA-TCATT
* * * * * *
14003546 TGTATTTTTTTGATCTGTAGTGTTATCTCGATCATC
1 TTTATTTTTTTGACCTATGGTGTTGTCTCGATCATT
* * * * **
14003582 TTTA--TTTTTCAACT-TGCAATGTTGTCTTTG-TCACA
1 TTTATTTTTTTGACCTATG--GTGTTGTC-TCGATCATT
* ** *
14003617 TTTGTTTTCCTGACC-ACTGGTGTTGTCTCGATTATT
1 TTTATTTTTTTGACCTA-TGGTGTTGTCTCGATCATT
* * * *
14003653 TTTATTTTTTTGA-CT-TGCAATGTTGAC-CCAGTCATC
1 TTTATTTTTTTGACCTATG--GTGTTGTCTCGA-TCATT
* * * * *
14003689 TTTA-TTTTTGGACTTATGATGTTGTC-CAAATAATCT
1 TTTATTTTTTTGACCTATGGTGTTGTCTC-GATCAT-T
* * * * *
14003725 TTT-TTTTTTT-ACTTGTGATGTTGTCCCAATCATT
1 TTTATTTTTTTGACCTATGGTGTTGTCTCGATCATT
**
14003759 TTTA-TTTTTTGACCTACAGTGTTGTCTCGATCATT
1 TTTATTTTTTTGACCTATGGTGTTGTCTCGATCATT
14003794 TTTATTTTTT
1 TTTATTTTTT
14003804 GACTTGTAGC
Statistics
Matches: 448, Mismatches: 126, Indels: 77
0.69 0.19 0.12
Matches are distributed among these distances:
33 1 0.00
34 41 0.09
35 165 0.37
36 228 0.51
37 9 0.02
38 4 0.01
ACGTcount: A:0.17, C:0.14, G:0.15, T:0.54
Consensus pattern (36 bp):
TTTATTTTTTTGACCTATGGTGTTGTCTCGATCATT
Found at i:14003400 original size:71 final size:71
Alignment explanation
Indices: 14003291--14003486 Score: 184
Period size: 71 Copynumber: 2.8 Consensus size: 71
14003281 GGATTTTTTC
* * * * * ** *
14003291 GATCATATTTATTTTTT-ACCTATGGTGTTGTCTTGGTCATCTTTATTTTTTTGAG-CTACGGTG
1 GATCATTTTTATTTTTTGACTTGTGGTGTTG-CTAGGTCATATTTATTTTTTTGAGCCTACAATA
14003354 TTATTTTA
65 TTA-TTTA
* * * *
14003362 G-TCATTTTTATTTTTTGACTTGTGGTGTTCGCTCGGTCATATTTAGTTCTCTG-GCCTACAATA
1 GATCATTTTTATTTTTTGACTTGTGGTGTT-GCTAGGTCATATTTATTTTTTTGAGCCTACAATA
*
14003425 TTATTTC
65 TTATTTA
* * *
14003432 GATCATTTTTATTTTTTGACTTGTTGTGTTATCTAGATCATATTTATTTTTTTGA
1 GATCATTTTTATTTTTTGACTTGTGGTGTT-GCTAGGTCATATTTATTTTTTTGA
14003487 TAGTTGGTGT
Statistics
Matches: 100, Mismatches: 20, Indels: 9
0.78 0.16 0.07
Matches are distributed among these distances:
70 19 0.19
71 80 0.80
72 1 0.01
ACGTcount: A:0.17, C:0.12, G:0.16, T:0.55
Consensus pattern (71 bp):
GATCATTTTTATTTTTTGACTTGTGGTGTTGCTAGGTCATATTTATTTTTTTGAGCCTACAATAT
TATTTA
Found at i:14003711 original size:35 final size:35
Alignment explanation
Indices: 14003672--14003808 Score: 114
Period size: 35 Copynumber: 3.9 Consensus size: 35
14003662 TTGACTTGCA
* *
14003672 ATGTTGACCCAGTCATCTTTATTTTTGGACTTATG
1 ATGTTGTCCCAATCATCTTTATTTTTGGACTTATG
* * * ** *
14003707 ATGTTGTCCAAATAATCTTTTTTTTTTTACTTGTG
1 ATGTTGTCCCAATCATCTTTATTTTTGGACTTATG
* * * *
14003742 ATGTTGTCCCAATCATTTTTATTTTTTGACCTA-C
1 ATGTTGTCCCAATCATCTTTATTTTTGGACTTATG
* * * *
14003776 AGTGTTGTCTCGATCATTTTTATTTTTTGACTT
1 A-TGTTGTCCCAATCATCTTTATTTTTGGACTT
14003809 GTAGCGTTGT
Statistics
Matches: 82, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
34 1 0.01
35 81 0.99
ACGTcount: A:0.19, C:0.15, G:0.13, T:0.53
Consensus pattern (35 bp):
ATGTTGTCCCAATCATCTTTATTTTTGGACTTATG
Found at i:14003712 original size:71 final size:70
Alignment explanation
Indices: 14003636--14003909 Score: 241
Period size: 70 Copynumber: 3.9 Consensus size: 70
14003626 CTGACCACTG
* *
14003636 GTGTTGTCTCGATTATTTTTATTTTTTTGACTTGCAATGTTGACCCAGTCATCTTTATTTTTGGA
1 GTGTTGTCTCGATTATTTTTA-TTTTTTGACTTGCAATGTTGTCCCAGTCATCTTTATTTTTTGA
14003701 CTTAT-
65 CTTATA
* * * ** * *
14003706 GATGTTGTC-CAAATAATCTTTT-TTTTTTTACTTGTGATGTTGTCCCAATCATTTTTATTTTTT
1 G-TGTTGTCTC-GATTAT-TTTTATTTTTTGACTTGCAATGTTGTCCCAGTCATCTTTATTTTTT
* *
14003769 GACCTACA
63 GACTTATA
* * ** ** * *
14003777 GTGTTGTCTCGATCATTTTTATTTTTTGACTTGTAGCGTTGTCCTGGTCATCTTTATTTTTTCAA
1 GTGTTGTCTCGATTATTTTTATTTTTTGACTTGCAATGTTGTCCCAGTCATCTTTATTTTTTGAC
14003842 TCTATA
66 T-TATA
* ** * **
14003848 GTGTTGTCCCTTTTATCTTTATTTTTCAACTTGCAATGTTGT-CCAGGTCATCTTTATTTTTT
1 GTGTTGTCTCGATTATTTTTATTTTTTGACTTGCAATGTTGTCCCA-GTCATCTTTATTTTTT
14003910 CGTCCAACAA
Statistics
Matches: 159, Mismatches: 37, Indels: 15
0.75 0.18 0.07
Matches are distributed among these distances:
69 4 0.03
70 87 0.55
71 64 0.40
72 4 0.03
ACGTcount: A:0.17, C:0.16, G:0.14, T:0.53
Consensus pattern (70 bp):
GTGTTGTCTCGATTATTTTTATTTTTTGACTTGCAATGTTGTCCCAGTCATCTTTATTTTTTGAC
TTATA
Found at i:14003818 original size:35 final size:35
Alignment explanation
Indices: 14002660--14003838 Score: 235
Period size: 36 Copynumber: 33.5 Consensus size: 35
14002650 TGTTATCCTA
* * * *
14002660 ATCATTTTTATTTTTTGACATGTGGTGTTATCCCG
1 ATCATTTTTATTTTTTGACTTGTAGTGTTGTCTCG
* * *
14002695 ATCATTTTTA-TTTTTGACTTACTA-TGTTATCTAG
1 ATCATTTTTATTTTTTGACTT-GTAGTGTTGTCTCG
* * * ** * * *
14002729 GTCATTTTTGTTTCTTTGACCTACAATGTTATCACG
1 ATCATTTTTATTT-TTTGACTTGTAGTGTTGTCTCG
* * ** **
14002765 ATCATTTTTATTTTTTTTAGTTGTAAAGTTGTCAGG
1 ATCATTTTTA-TTTTTTGACTTGTAGTGTTGTCTCG
*
14002801 ATCATTTTTATTTTTTCGACTTGT-GATGTTGT-TCCA
1 ATCATTTTTATTTTTT-GACTTGTAG-TGTTGTCT-CG
* * * *
14002837 ATCATTTTTATTTTTTAACTTGCAGTGCTGTCT-T
1 ATCATTTTTATTTTTTGACTTGTAGTGTTGTCTCG
* * * * * * *
14002871 ATTCATTTTTGTTTTTTCAATATGCATTATTGAC-CTG
1 A-TCATTTTTATTTTTTGACT-TGTAGTGTTGTCTC-G
* * * * * * *
14002908 ATCATCTTTATTTTTTGACTTGCAATATTGGCCCA
1 ATCATTTTTATTTTTTGACTTGTAGTGTTGTCTCG
*
14002943 ATCATATTTATTTTCTTGACCATTG--GTGTTGTCTC-
1 ATCATTTTTATTTT-TTGA-C-TTGTAGTGTTGTCTCG
* * * * * * *
14002978 ATTCATTTATATATTTTGACCTG-CGATATTAT-TCCC
1 A-TCATTTTTATTTTTTGACTTGTAG-TGTTGTCT-CG
* * * *
14003014 ATCATCTTTATTTTTTAACTTG-CGATGTTGTCTAG
1 ATCATTTTTATTTTTTGACTTGTAG-TGTTGTCTCG
* * * * * *
14003049 -TCATATTTGTTTTCTCGACCATTG--GTGCTATCCCG
1 ATCATTTTTATTTT-TTGA-C-TTGTAGTGTTGTCTCG
* *
14003084 ATCATCTTTATTTTTTTTGAC-T-TACGTGTTGTTTCG
1 ATCAT-TTT-TATTTTTTGACTTGTA-GTGTTGTCTCG
* * ** * * *
14003120 ATCA-TCTT-GTTTTCCA-AT-TATTG-TGTCTTG
1 ATCATTTTTATTTTTTGACTTGTAGTGTTGTCTCG
* ** * **
14003150 GTTGTCTTTATTTTTTGACTTACAGTGTTGTCAT-G
1 ATCATTTTTATTTTTTGACTTGTAGTGTTGTC-TCG
* * *
14003185 ATCATTTTTATTATTTTGAATTAT-GATGTTGTCCCG
1 ATCATTTTTATT-TTTTGACTTGTAG-TGTTGTCTCG
* * *
14003221 ATCATTTTTATTTTTTTGACCTATGGTGTTGTCTCG
1 ATCATTTTTA-TTTTTTGACTTGTAGTGTTGTCTCG
*** * * *
14003257 ATCATTTTTATTTTCCAAC-T-TACGGGATTTTTTCG
1 ATCATTTTTATTTTTTGACTTGTA-GTG-TTGTCTCG
* * * * *
14003292 ATCATATTTATTTTTT-ACCTATGGTGTTGTCTTG
1 ATCATTTTTATTTTTTGACTTGTAGTGTTGTCTCG
* * * * **
14003326 GTCATCTTTATTTTTTTGAGCTACG--GTGTTAT-TTT
1 ATCATTTTTA-TTTTTTGA-CT-TGTAGTGTTGTCTCG
*
14003361 AGTCATTTTTATTTTTTGACTTGTGGTGTTCG-CTCG
1 A-TCATTTTTATTTTTTGACTTGTAGTGTT-GTCTCG
* * * * * * ** * * * *
14003397 GTCATATTTAGTTCTCTGGCCTACAATATTATTTCG
1 ATCATTTTTA-TTTTTTGACTTGTAGTGTTGTCTCG
* * *
14003433 ATCATTTTTATTTTTTGACTTGTTGTGTTATCTAG
1 ATCATTTTTATTTTTTGACTTGTAGTGTTGTCTCG
* * * *
14003468 ATCATATTTATTTTTTTGA-TAGTTGGTGTTGTCCCG
1 ATCATTTTTA-TTTTTTGACTTG-TAGTGTTGTCTCG
* * * *
14003504 ATCATCTTTATTTTTTTGACTTATGGTGTTATCT-G
1 ATCATTTTTA-TTTTTTGACTTGTAGTGTTGTCTCG
* *
14003539 AGTCATTTGTATTTTTTTGA-TCTGTAGTGTTATCTCG
1 A-TCATTTTTA-TTTTTTGACT-TGTAGTGTTGTCTCG
* ** * * *
14003576 ATCATCTTTATTTTTCAACTTGCAATGTTGTCTTTG
1 ATCATTTTTATTTTTTGACTTGTAGTGTTGTC-TCG
** * * *** *
14003612 -TCACATTTGTTTTCCTGACCACTGGTGTTGTCTCG
1 ATCATTTTTATTTT-TTGACTTGTAGTGTTGTCTCG
* * * * *
14003647 ATTATTTTTATTTTTTTGACTTGCAATGTTGAC-CC
1 ATCATTTTTA-TTTTTTGACTTGTAGTGTTGTCTCG
* * * *
14003682 AGTCATCTTTATTTTTGGACTTAT-GATGTTGTC-CAA
1 A-TCATTTTTATTTTTTGACTTGTAG-TGTTGTCTC-G
* * * *
14003718 ATAATCTTTT-TTTTTTTACTTGT-GATGTTGTCCCA
1 ATCAT-TTTTATTTTTTGACTTGTAG-TGTTGTCTCG
* **
14003753 ATCATTTTTATTTTTTGACCTACAGTGTTGTCTCG
1 ATCATTTTTATTTTTTGACTTGTAGTGTTGTCTCG
*
14003788 ATCATTTTTATTTTTTGACTTGTAGCGTTGTC-CTG
1 ATCATTTTTATTTTTTGACTTGTAGTGTTGTCTC-G
* *
14003823 GTCATCTTTATTTTTT
1 ATCATTTTTATTTTTT
14003839 CAATCTATAG
Statistics
Matches: 825, Mismatches: 240, Indels: 158
0.67 0.20 0.13
Matches are distributed among these distances:
30 6 0.01
31 4 0.00
32 13 0.02
33 6 0.01
34 71 0.09
35 342 0.41
36 351 0.43
37 24 0.03
38 8 0.01
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.53
Consensus pattern (35 bp):
ATCATTTTTATTTTTTGACTTGTAGTGTTGTCTCG
Found at i:14003854 original size:36 final size:36
Alignment explanation
Indices: 14003754--14003910 Score: 103
Period size: 35 Copynumber: 4.4 Consensus size: 36
14003744 GTTGTCCCAA
* * * * *
14003754 TCATTTTTATTTTTT-GACCTACAGTGTTGT-CTCGA
1 TCATCTTTATTTTTTCAATCTATAGTGTTGTCCT-GG
* * * * *
14003789 TCATTTTTATTTTTTGACT-TGTAGCGTTGTCCTGG
1 TCATCTTTATTTTTTCAATCTATAGTGTTGTCCTGG
*
14003824 TCATCTTTATTTTTTCAATCTATAGTGTTGTCCCT-T
1 TCATCTTTATTTTTTCAATCTATAGTGTTGT-CCTGG
* * *
14003860 TTATCTTTA-TTTTTCAA-CT-TGCAATGTTGTCCAGG
1 TCATCTTTATTTTTTCAATCTAT--AGTGTTGTCCTGG
14003895 TCATCTTTATTTTTTC
1 TCATCTTTATTTTTTC
14003911 GTCCAACAAT
Statistics
Matches: 96, Mismatches: 18, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
33 1 0.01
34 4 0.04
35 63 0.66
36 25 0.26
37 3 0.03
ACGTcount: A:0.16, C:0.17, G:0.13, T:0.54
Consensus pattern (36 bp):
TCATCTTTATTTTTTCAATCTATAGTGTTGTCCTGG
Found at i:14003937 original size:71 final size:71
Alignment explanation
Indices: 14003754--14003952 Score: 204
Period size: 71 Copynumber: 2.8 Consensus size: 71
14003744 GTTGTCCCAA
* * * * ** * *
14003754 TCATTTTTATTTTTT-GACCTACAGTGTTGTCTCGATCATTTTTATTTTTTGACTTGTAGCGTTG
1 TCATCTTTATTTTTTCGTCCTACAGTGTTGTCCCGATCATCTTTATTTTTCAACTTGCAACGTTG
*
14003818 TCCTGG
66 TCCAGG
* * ** * *
14003824 TCATCTTTATTTTTTCAAT-CTATAGTGTTGTCCCTTTTATCTTTATTTTTCAACTTGCAATGTT
1 TCATCTTTATTTTTTC-GTCCTACAGTGTTGTCCCGATCATCTTTATTTTTCAACTTGCAACGTT
14003888 GTCCAGG
65 GTCCAGG
* * * *
14003895 TCATCTTTATTTTTTCGTCCAACAATGTTATCCCGATCATCTTTATTTTCCAACTTGC
1 TCATCTTTATTTTTTCGTCCTACAGTGTTGTCCCGATCATCTTTATTTTTCAACTTGC
14003953 GGTGCTGTAT
Statistics
Matches: 102, Mismatches: 24, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
70 15 0.15
71 87 0.85
ACGTcount: A:0.18, C:0.20, G:0.12, T:0.51
Consensus pattern (71 bp):
TCATCTTTATTTTTTCGTCCTACAGTGTTGTCCCGATCATCTTTATTTTTCAACTTGCAACGTTG
TCCAGG
Found at i:14004177 original size:35 final size:35
Alignment explanation
Indices: 14004011--14004198 Score: 130
Period size: 35 Copynumber: 5.3 Consensus size: 35
14004001 GTCCAAGTTT
* **
14004011 TCTTTATTTTTTTGACTTGCTG-TGTTGTCTCGGTCA
1 TCTTTA-TTTTTTAACTTGC-GATGTTGTCTCAATCA
* * * * *
14004047 TCTTT-TTTTTTTACTTACAATATTATC-CTAATCA
1 TCTTTATTTTTTAACTTGCGATGTTGTCTC-AATCA
* * * * * * *
14004081 TTTTTATTTTTCAACCTACGATGCTATCCCAATCA
1 TCTTTATTTTTTAACTTGCGATGTTGTCTCAATCA
* * *
14004116 TATTTATTATTTCAACTTGCGGTGTTGTCTCAATCA
1 TCTTTATT-TTTTAACTTGCGATGTTGTCTCAATCA
* *
14004152 TCTTTATTTTTTAACTTGCGATGTTGTTTCGATCA
1 TCTTTATTTTTTAACTTGCGATGTTGTCTCAATCA
*
14004187 TTTTTATTTTTT
1 TCTTTATTTTTT
14004199 TGACCTACGA
Statistics
Matches: 120, Mismatches: 27, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
33 1 0.01
34 23 0.19
35 62 0.52
36 34 0.28
ACGTcount: A:0.19, C:0.17, G:0.10, T:0.54
Consensus pattern (35 bp):
TCTTTATTTTTTAACTTGCGATGTTGTCTCAATCA
Found at i:14004239 original size:105 final size:104
Alignment explanation
Indices: 14004019--14004267 Score: 250
Period size: 105 Copynumber: 2.4 Consensus size: 104
14004009 TTTCTTTATT
* ** *
14004019 TTTTTGACTTGCTGTGTTGTCTCGGTCATCTTT-TTTTTTTACTTACAATATTATCCTAATCATT
1 TTTTTGACTTGCAGTGTTGTCTCAATCATCTTTATTTTTTAACTTACAATATTATCCTAATCATT
*
14004083 TTTATTTTTCAACCTACGATGCTATCCCAATCATATTTA
66 TTTATTTTTCAACCTACGATACTATCCCAATCATATTTA
* * * * * * * *
14004122 TTATTTCAACTTGCGGTGTTGTCTCAATCATCTTTATTTTTTAACTTGCGATGTTGT-TTCGATC
1 TT-TTT-GACTTGCAGTGTTGTCTCAATCATCTTTATTTTTTAACTTACAATATTATCCT-AATC
** * * * *
14004186 ATTTTTATTTTTTTGACCTACGATATTATCCTAGTCATATTTG
63 ATTTTTA-TTTTTCAACCTACGATACTATCCCAATCATATTTA
* * *
14004229 TTTTTGACTTGTAGTATTATCTCAATCATCTTTATTTTT
1 TTTTTGACTTGCAGTGTTGTCTCAATCATCTTTATTTTT
14004268 CCAACATGTA
Statistics
Matches: 118, Mismatches: 23, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
103 2 0.02
104 3 0.03
105 54 0.46
106 29 0.25
107 30 0.25
ACGTcount: A:0.20, C:0.17, G:0.10, T:0.52
Consensus pattern (104 bp):
TTTTTGACTTGCAGTGTTGTCTCAATCATCTTTATTTTTTAACTTACAATATTATCCTAATCATT
TTTATTTTTCAACCTACGATACTATCCCAATCATATTTA
Found at i:14004346 original size:21 final size:21
Alignment explanation
Indices: 14004305--14004347 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
14004295 CTTTAGTTTC
*
14004305 CAAAACAAAAACGAAACAAAA
1 CAAAACAAAAAAGAAACAAAA
* *
14004326 CAAAACAACAAAATAAAAAAAA
1 CAAAACAA-AAAAGAAACAAAA
14004348 AAGGGGAAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.79, C:0.16, G:0.02, T:0.02
Consensus pattern (21 bp):
CAAAACAAAAAAGAAACAAAA
Found at i:14007255 original size:13 final size:13
Alignment explanation
Indices: 14007237--14007275 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
14007227 TGTAAATTTT
14007237 TAAAATGAAACCC
1 TAAAATGAAACCC
14007250 TAAAATGAAACCC
1 TAAAATGAAACCC
*
14007263 TAAAGTGAAACCC
1 TAAAATGAAACCC
14007276 AAAGTAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.51, C:0.23, G:0.10, T:0.15
Consensus pattern (13 bp):
TAAAATGAAACCC
Found at i:14007362 original size:46 final size:48
Alignment explanation
Indices: 14007306--14007397 Score: 116
Period size: 46 Copynumber: 2.0 Consensus size: 48
14007296 AGGTGAAACC
*** *
14007306 TAAAAGCCCTAGGTGAAACCTTAAACCATAAAGT-CCAAAACCCTAGG
1 TAAAAGCCCTAAACGAAAACTTAAACCATAAAGTCCCAAAACCCTAGG
* *
14007353 TAAAA-CCCTAAACGAAAACTTAAACCGTAAAGTCCCAAGACCCTA
1 TAAAAGCCCTAAACGAAAACTTAAACCATAAAGTCCCAAAACCCTA
14007398 AAATCATTTG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
46 23 0.61
47 15 0.39
ACGTcount: A:0.45, C:0.27, G:0.12, T:0.16
Consensus pattern (48 bp):
TAAAAGCCCTAAACGAAAACTTAAACCATAAAGTCCCAAAACCCTAGG
Found at i:14008374 original size:24 final size:25
Alignment explanation
Indices: 14008347--14008394 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
14008337 TCATCAATGA
14008347 TTATCA-TTTACAAAGAATGTTATT
1 TTATCATTTTACAAAGAATGTTATT
* *
14008371 TTATTATTTTAGAAAGAATGTTAT
1 TTATCATTTTACAAAGAATGTTAT
14008395 GATAAATCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.38, C:0.04, G:0.10, T:0.48
Consensus pattern (25 bp):
TTATCATTTTACAAAGAATGTTATT
Found at i:14009970 original size:18 final size:18
Alignment explanation
Indices: 14009944--14009981 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
14009934 TTATCTTTTT
14009944 AAAACTAAAAATATTGAA
1 AAAACTAAAAATATTGAA
*
14009962 AAAATTAAAAATATTGAA
1 AAAACTAAAAATATTGAA
14009980 AA
1 AA
14009982 TGTTATGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.24
Consensus pattern (18 bp):
AAAACTAAAAATATTGAA
Found at i:14011132 original size:12 final size:12
Alignment explanation
Indices: 14011115--14011140 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14011105 ATGCGCAAAT
14011115 ATATTTAAACTC
1 ATATTTAAACTC
14011127 ATATTTAAACTC
1 ATATTTAAACTC
14011139 AT
1 AT
14011141 TAAATGATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (12 bp):
ATATTTAAACTC
Found at i:14015451 original size:14 final size:15
Alignment explanation
Indices: 14015418--14015453 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
14015408 TCATGAACAT
*
14015418 AAACAAATTATAACC
1 AAACAAATTATAAAC
14015433 AAACAAATT-TAAAC
1 AAACAAATTATAAAC
14015447 AAACAAA
1 AAACAAA
14015454 CCCTAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 11 0.55
15 9 0.45
ACGTcount: A:0.67, C:0.17, G:0.00, T:0.17
Consensus pattern (15 bp):
AAACAAATTATAAAC
Found at i:14016281 original size:4 final size:4
Alignment explanation
Indices: 14016272--14016321 Score: 66
Period size: 4 Copynumber: 12.8 Consensus size: 4
14016262 TATTTTAGAT
* * *
14016272 TTTA TTTA TTTA TTT- GTTA TTTA TCTA TTCA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
14016319 TTT
1 TTT
14016322 GGGTTTTATC
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
3 2 0.05
4 37 0.95
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:14016345 original size:35 final size:35
Alignment explanation
Indices: 14016272--14016355 Score: 91
Period size: 35 Copynumber: 2.4 Consensus size: 35
14016262 TATTTTAGAT
* *
14016272 TTTATTTATTTATTTGTTATTTATCTATTCATTTA
1 TTTATTTATTTATTTGGTATTTATCTATTCATTCA
* **
14016307 TTTATTTATTTATTTGGGT-TTTATCTTTTTGTTCA
1 TTTATTTATTTATTT-GGTATTTATCTATTCATTCA
*
14016342 TTTATTCA-TTATTT
1 TTTATTTATTTATTT
14016356 TGTTTATCTC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
34 6 0.14
35 34 0.81
36 2 0.05
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.69
Consensus pattern (35 bp):
TTTATTTATTTATTTGGTATTTATCTATTCATTCA
Found at i:14017046 original size:19 final size:20
Alignment explanation
Indices: 14017003--14017049 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
14016993 TTGGGTTCTA
*
14017003 AAAAGAGAGGGAGAGAAAAG
1 AAAAGAGAGAGAGAGAAAAG
* *
14017023 GAAAGA-AGAGAGAGAAACG
1 AAAAGAGAGAGAGAGAAAAG
14017042 AAAAGAGA
1 AAAAGAGA
14017050 AACCTGAGCA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.62, C:0.02, G:0.36, T:0.00
Consensus pattern (20 bp):
AAAAGAGAGAGAGAGAAAAG
Found at i:14027379 original size:43 final size:43
Alignment explanation
Indices: 14027309--14027618 Score: 282
Period size: 43 Copynumber: 7.2 Consensus size: 43
14027299 TTTACTTATT
* * *
14027309 TTTATTTTTT-AAGTTATTGAGTCTCTACTTAGAGGAGCCTTA
1 TTTATTTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTA
** * * **
14027351 TTTATTTTTTAAAGTCATTAAGCCTCTACTTAGAATAGCCTTA
1 TTTATTTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTA
* ** *
14027394 TTTATGTTCCAAAGTTGTTGAGCCTCTGCTTAGA-AAGCCTTA
1 TTTATTTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTA
* * * *
14027436 TTTATTTTTTAAAGTTGTTAAGCTTTTGCTTAGAGGAGCTTTA
1 TTTATTTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTA
* * ** * ** *
14027479 TTTATTTTCTAAAGTTGTGGAATCTTTGCTTAGAAAAGCATTA
1 TTTATTTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTA
* * * *
14027522 TTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGATGAGCTTTA
1 TTTATTTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTA
** * ** *
14027565 TTTACTTTTCCAAAGTCGTTGAGCCTCTATTTAGAGGAGCCATA
1 TTTA-TTTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTA
14027609 TTTATTTTTT
1 TTTATTTTTT
14027619 TTAAAAGCCT
Statistics
Matches: 217, Mismatches: 48, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
42 45 0.21
43 135 0.62
44 37 0.17
ACGTcount: A:0.25, C:0.13, G:0.16, T:0.46
Consensus pattern (43 bp):
TTTATTTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTA
Found at i:14027449 original size:85 final size:86
Alignment explanation
Indices: 14027319--14027618 Score: 316
Period size: 85 Copynumber: 3.5 Consensus size: 86
14027309 TTTATTTTTT
* * * ** *
14027319 AAGTTATTGAGTCTCTACTTAGAGGAGCCTTATTTATTTTTTAAAGTCATTAAGCCTCTACTTAG
1 AAGTTGTTGAGCCTCTACTTAGAGAAGCCTTATTTATTTTTTAAAGTTGTTAAGCCTCTGCTTAG
* *
14027384 AATAGCCTTATTTATGTTCCA
66 AATAGCTTTATTTATTTTCCA
* * *
14027405 AAGTTGTTGAGCCTCTGCTTAGA-AAGCCTTATTTATTTTTTAAAGTTGTTAAGCTTTTGCTTAG
1 AAGTTGTTGAGCCTCTACTTAGAGAAGCCTTATTTATTTTTTAAAGTTGTTAAGCCTCTGCTTAG
** *
14027469 AGGAGCTTTATTTATTTTCTA
66 AATAGCTTTATTTATTTTCCA
* ** * * * * * * *
14027490 AAGTTGTGGAATCTTTGCTTAGAAAAGCATTATTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAG
1 AAGTTGTTGAGCCTCTACTTAGAGAAGCCTTATTTATTTTTTAAAGTTGTTAAGCCTCTGCTTAG
14027555 -ATGAGCTTTATTTACTTTTCCA
66 AAT-AGCTTTATTTA-TTTTCCA
* * * *
14027577 AAGTCGTTGAGCCTCTATTTAGAGGAGCCATATTTATTTTTT
1 AAGTTGTTGAGCCTCTACTTAGAGAAGCCTTATTTATTTTTT
14027619 TTAAAAGCCT
Statistics
Matches: 172, Mismatches: 39, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
85 70 0.41
86 66 0.38
87 36 0.21
ACGTcount: A:0.25, C:0.14, G:0.17, T:0.44
Consensus pattern (86 bp):
AAGTTGTTGAGCCTCTACTTAGAGAAGCCTTATTTATTTTTTAAAGTTGTTAAGCCTCTGCTTAG
AATAGCTTTATTTATTTTCCA
Found at i:14027890 original size:4 final size:4
Alignment explanation
Indices: 14027881--14027926 Score: 67
Period size: 4 Copynumber: 11.8 Consensus size: 4
14027871 TATTTTAGAT
* *
14027881 TTTA TTTA TTTA TTTA TTTA -TTA TCTA TTCA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
14027927 GGGTTTTATC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
3 3 0.08
4 34 0.92
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:14028403 original size:19 final size:19
Alignment explanation
Indices: 14028379--14028415 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
14028369 TTTTAGAAAG
14028379 TTTTTTA-GAAAATTTTCAT
1 TTTTTTATG-AAATTTTCAT
14028398 TTTTTTATGAAATTTTCA
1 TTTTTTATGAAATTTTCA
14028416 ACACTGGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.59
Consensus pattern (19 bp):
TTTTTTATGAAATTTTCAT
Found at i:14032452 original size:23 final size:25
Alignment explanation
Indices: 14032414--14032480 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 25
14032404 TTATAATGTC
14032414 AAAAAATAAAATAATTTTAAA-ATAT
1 AAAAAATAAAATAATTTTAAATAT-T
14032439 AAAAAAT-AAA-AATTTTAAATATT
1 AAAAAATAAAATAATTTTAAATATT
14032462 AAAAAA-AAGACATAATTTT
1 AAAAAATAA-A-ATAATTTT
14032481 TAAGCCCTCC
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
23 17 0.46
24 6 0.16
25 8 0.22
26 6 0.16
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (25 bp):
AAAAAATAAAATAATTTTAAATATT
Found at i:14035608 original size:42 final size:44
Alignment explanation
Indices: 14035554--14035649 Score: 124
Period size: 44 Copynumber: 2.2 Consensus size: 44
14035544 ATCTAAGCGT
* *
14035554 AATTTAGAAAAAAAA-ATTCTTTT-GCTTGAAATTCTCACAATA
1 AATTTAGAAAAAAAACATTCTTTTCACTTAAAATTCTCACAATA
* *
14035596 AATTTAGGAAAAAAACATTTTTTTCACTTAAAATTCTCACAATA
1 AATTTAGAAAAAAAACATTCTTTTCACTTAAAATTCTCACAATA
* *
14035640 ACTTTTGAAA
1 AATTTAGAAA
14035650 TCTAGCATAA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 14 0.31
43 7 0.16
44 24 0.53
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.36
Consensus pattern (44 bp):
AATTTAGAAAAAAAACATTCTTTTCACTTAAAATTCTCACAATA
Found at i:14036419 original size:10 final size:10
Alignment explanation
Indices: 14036404--14036428 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14036394 CCATTCTCTC
14036404 TTTTTTTTCT
1 TTTTTTTTCT
14036414 TTTTTTTTCT
1 TTTTTTTTCT
14036424 TTTTT
1 TTTTT
14036429 CTCTCTTCGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:14039611 original size:19 final size:20
Alignment explanation
Indices: 14039587--14039629 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
14039577 TATTTTAGTC
14039587 TTAAAATTAAAATTAAA-AT
1 TTAAAATTAAAATTAAACAT
**
14039606 TTAAAATTTGAATTAAACAT
1 TTAAAATTAAAATTAAACAT
14039626 TTAA
1 TTAA
14039630 TAATCTAGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (20 bp):
TTAAAATTAAAATTAAACAT
Found at i:14039738 original size:23 final size:24
Alignment explanation
Indices: 14039694--14039758 Score: 87
Period size: 23 Copynumber: 2.8 Consensus size: 24
14039684 TCCCTTTCTT
14039694 TTCTTTTTTTTTTTCCATTTTTCC
1 TTCTTTTTTTTTTTCCATTTTTCC
*
14039718 TTCTTTTTTTTTTTCTA-TTTTCC
1 TTCTTTTTTTTTTTCCATTTTTCC
* **
14039741 CTCTTTTTGCTTTTCCAT
1 TTCTTTTTTTTTTTCCAT
14039759 CATTTTCTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
23 19 0.54
24 16 0.46
ACGTcount: A:0.05, C:0.22, G:0.02, T:0.72
Consensus pattern (24 bp):
TTCTTTTTTTTTTTCCATTTTTCC
Found at i:14039863 original size:14 final size:14
Alignment explanation
Indices: 14039846--14039875 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
14039836 GTTTTGACAA
14039846 AATTTAATTTTTTG
1 AATTTAATTTTTTG
14039860 AATTTAATTTTTTG
1 AATTTAATTTTTTG
14039874 AA
1 AA
14039876 AGCAATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (14 bp):
AATTTAATTTTTTG
Found at i:14040074 original size:25 final size:25
Alignment explanation
Indices: 14040046--14040106 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
14040036 GCCTTCTATC
14040046 TTTTCTCTTTTCCTTTTCTTTT-TTT
1 TTTTCTCTTTTCCTTTT-TTTTATTT
* *
14040071 TTTTCTATTTACCTTTTTTTTATTT
1 TTTTCTCTTTTCCTTTTTTTTATTT
**
14040096 TTCCCTCTTTT
1 TTTTCTCTTTT
14040107 GATAGGGAGA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
24 4 0.14
25 25 0.86
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (25 bp):
TTTTCTCTTTTCCTTTTTTTTATTT
Found at i:14040598 original size:49 final size:49
Alignment explanation
Indices: 14040545--14040640 Score: 165
Period size: 49 Copynumber: 2.0 Consensus size: 49
14040535 TCTCAATCTT
* *
14040545 ATACATAACAAATATGATGAAAGATAAAGATCATTCTATAATACACTTA
1 ATACATAACAAATATGATGAAAGATAAAAATCATCCTATAATACACTTA
*
14040594 ATACATAACAAATATGATGAAAGATAAAAATCATCCTCTAATACACT
1 ATACATAACAAATATGATGAAAGATAAAAATCATCCTATAATACACT
14040641 CAATCCTTGT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.51, C:0.15, G:0.07, T:0.27
Consensus pattern (49 bp):
ATACATAACAAATATGATGAAAGATAAAAATCATCCTATAATACACTTA
Found at i:14048625 original size:2 final size:2
Alignment explanation
Indices: 14048618--14048680 Score: 94
Period size: 2 Copynumber: 32.5 Consensus size: 2
14048608 CATTAGAGTA
* *
14048618 AT AT AT AT AA AT AT A- AT -T AT AA AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14048658 AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT A
14048681 GTTGTTGTTC
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
1 2 0.04
2 53 0.96
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:14049049 original size:7 final size:6
Alignment explanation
Indices: 14049007--14049047 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
14048997 AAACTCTAAA
* *
14049007 TTTTAT TTTTAT TTTTAC TTTTAG TTTTATT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTA-T TTTTAT TTTT
14049048 TAGTTAAAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
6 26 0.84
7 5 0.16
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTTAT
Found at i:14049716 original size:56 final size:55
Alignment explanation
Indices: 14049656--14049777 Score: 181
Period size: 56 Copynumber: 2.2 Consensus size: 55
14049646 ATTTTATGTA
* * * *
14049656 TTATTATTTGCATGATTATATATTTAATTGCATGTTTATTTGCATGATTATTAAT
1 TTATTATTTGCACGATTATATACTTAATTGCATGTCTAATTGCATGATTATTAAT
*
14049711 GTTATTATTTGCACGATTATATACTTGATTGCATGTCTAATTGCATGATTATTAAT
1 -TTATTATTTGCACGATTATATACTTAATTGCATGTCTAATTGCATGATTATTAAT
14049767 TTATTTATTTG
1 TTA-TTATTTG
14049778 TGTGATTGCA
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
55 3 0.05
56 57 0.95
ACGTcount: A:0.28, C:0.07, G:0.12, T:0.52
Consensus pattern (55 bp):
TTATTATTTGCACGATTATATACTTAATTGCATGTCTAATTGCATGATTATTAAT
Found at i:14049976 original size:19 final size:19
Alignment explanation
Indices: 14049939--14049977 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
14049929 ATTGTTATTA
* *
14049939 TTATTGCATGATTTCATAT
1 TTATTGCATGATATAATAT
14049958 TTATTGCATGATATAATAT
1 TTATTGCATGATATAATAT
14049977 T
1 T
14049978 ATATGTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.31, C:0.08, G:0.10, T:0.51
Consensus pattern (19 bp):
TTATTGCATGATATAATAT
Found at i:14049998 original size:24 final size:24
Alignment explanation
Indices: 14049954--14050007 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
14049944 GCATGATTTC
*
14049954 ATATTTATTGCATGATATAATATT
1 ATATTTATTACATGATATAATATT
*
14049978 ATATGTTATTACATTAT-TAATATT
1 ATAT-TTATTACATGATATAATATT
14050002 ATATTT
1 ATATTT
14050008 GGATTATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 2 0.07
24 15 0.56
25 10 0.37
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.54
Consensus pattern (24 bp):
ATATTTATTACATGATATAATATT
Found at i:14052785 original size:72 final size:72
Alignment explanation
Indices: 14052668--14052810 Score: 232
Period size: 72 Copynumber: 2.0 Consensus size: 72
14052658 ATCTCCATAT
* * *
14052668 GAAACTTTTTCAGTTCCAGATCTCAATTCTGCCTTAAGCTTACTGAATTTTCGCATGAATTTTTT
1 GAAACTTTTTCAGTTCCAGATCTCAATTCTGCCTTAAGCTAACTGAACTTTCGCATGAATTTATT
14052733 AAGCTTC
66 AAGCTTC
* * *
14052740 GAAACTTTTTCAGTTCCTGATCTCAATTCTGCCTTAAGCTAACTGAACTTTGGCTTGAATTTATT
1 GAAACTTTTTCAGTTCCAGATCTCAATTCTGCCTTAAGCTAACTGAACTTTCGCATGAATTTATT
14052805 AAGCTT
66 AAGCTT
14052811 GCAATATTAG
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.25, C:0.20, G:0.13, T:0.41
Consensus pattern (72 bp):
GAAACTTTTTCAGTTCCAGATCTCAATTCTGCCTTAAGCTAACTGAACTTTCGCATGAATTTATT
AAGCTTC
Found at i:14053412 original size:55 final size:54
Alignment explanation
Indices: 14053306--14053412 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 54
14053296 CTTAGAATTT
* *
14053306 AGAATAAAGGTTAACCAAACAAGATTATGAATGAAGAAGTTATGCAATAAACTC
1 AGAATAAAGGTTAACCAAAAAAGATTATGAATGAAGAAGCTATGCAATAAACTC
* *
14053360 AGAATAAATGTTAGCCAAAAAAGATTA-GAAATTGAAGAAGCTATGCAATAAAC
1 AGAATAAAGGTTAACCAAAAAAGATTATG-AA-TGAAGAAGCTATGCAATAAAC
14053413 AAAATAAACT
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
53 1 0.02
54 26 0.55
55 20 0.43
ACGTcount: A:0.51, C:0.10, G:0.17, T:0.21
Consensus pattern (54 bp):
AGAATAAAGGTTAACCAAAAAAGATTATGAATGAAGAAGCTATGCAATAAACTC
Found at i:14053743 original size:34 final size:34
Alignment explanation
Indices: 14053700--14053768 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
14053690 GAAATGAATG
*
14053700 CAAAGACAGGAAAGGAATCTCCAATTATTAGATA
1 CAAAGACAGGAAAGAAATCTCCAATTATTAGATA
14053734 CAAAGACAGGAAAGAAATCTCCAATTATTAGATA
1 CAAAGACAGGAAAGAAATCTCCAATTATTAGATA
14053768 C
1 C
14053769 TAACTATAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.20
Consensus pattern (34 bp):
CAAAGACAGGAAAGAAATCTCCAATTATTAGATA
Found at i:14054790 original size:88 final size:88
Alignment explanation
Indices: 14054641--14054819 Score: 315
Period size: 88 Copynumber: 2.0 Consensus size: 88
14054631 GTTATTTGAA
* *
14054641 GATAGTTTTGCCTCCTGATACTTTTGCATGTTTAAAAAAAATAAAACAGTTTGGGTTTTAAATAG
1 GATAGTTTTGCATCCTGATACTTTTGCATGTTTAAAAAAAATAAAACACTTTGGGTTTTAAATAG
*
14054706 CCTATGCAATTTTATATAGCCAT
66 CCTATGCAATTGTATATAGCCAT
14054729 GATAGTTTTGCATCCTGATACTTTTGCACT-TTTAAAAAAAATAAAACACTTTGGGTTTTAAATA
1 GATAGTTTTGCATCCTGATACTTTTGCA-TGTTTAAAAAAAATAAAACACTTTGGGTTTTAAATA
14054793 GCCTATGCAATTGTATATAGCCAT
65 GCCTATGCAATTGTATATAGCCAT
14054817 GAT
1 GAT
14054820 TAAAGGTCTG
Statistics
Matches: 87, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
88 86 0.99
89 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.38
Consensus pattern (88 bp):
GATAGTTTTGCATCCTGATACTTTTGCATGTTTAAAAAAAATAAAACACTTTGGGTTTTAAATAG
CCTATGCAATTGTATATAGCCAT
Found at i:14055439 original size:2 final size:2
Alignment explanation
Indices: 14055432--14055461 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
14055422 TCTTCCTTGC
14055432 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14055462 TTCCCCTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:14056970 original size:21 final size:21
Alignment explanation
Indices: 14056944--14056992 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
14056934 GAATAACGGA
*
14056944 CACGAGAAGTGGCATGAAAAG
1 CACGAGAAGCGGCATGAAAAG
*
14056965 CACGAGAAGCGGTATGAAAAG
1 CACGAGAAGCGGCATGAAAAG
14056986 CAC-AGAA
1 CACGAGAA
14056993 AGCATGAGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 4 0.15
21 22 0.85
ACGTcount: A:0.45, C:0.16, G:0.31, T:0.08
Consensus pattern (21 bp):
CACGAGAAGCGGCATGAAAAG
Found at i:14061183 original size:61 final size:62
Alignment explanation
Indices: 14061086--14061208 Score: 185
Period size: 61 Copynumber: 2.0 Consensus size: 62
14061076 AAAGAAGAGC
* * *
14061086 CAAATACTAGTAGTATAGAAAAAAGTAAAGATTTTATGATTAAGATTCAAGAATCACTTAAT
1 CAAATACTAGTAGCATAGAAAAAAGTAAAGAATTTATGATCAAGATTCAAGAATCACTTAAT
* * *
14061148 CAAATATTAGTAGCATAG-AGATAGTAAAGAATTTATGATCAAGATTCAAGAATCACTTAAT
1 CAAATACTAGTAGCATAGAAAAAAGTAAAGAATTTATGATCAAGATTCAAGAATCACTTAAT
14061209 TTGGAATGGG
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
61 39 0.71
62 16 0.29
ACGTcount: A:0.47, C:0.09, G:0.14, T:0.30
Consensus pattern (62 bp):
CAAATACTAGTAGCATAGAAAAAAGTAAAGAATTTATGATCAAGATTCAAGAATCACTTAAT
Found at i:14062335 original size:19 final size:19
Alignment explanation
Indices: 14062301--14062349 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
14062291 GATTATTTGT
*
14062301 TTTATTTAATATTATTCAAA
1 TTTATTTAA-AATATTCAAA
14062321 TTTATTTAAAATATTCAAA
1 TTTATTTAAAATATTCAAA
*
14062340 TTAATTTAAA
1 TTTATTTAAA
14062350 TTGATGAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 18 0.67
20 9 0.33
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (19 bp):
TTTATTTAAAATATTCAAA
Found at i:14064469 original size:17 final size:17
Alignment explanation
Indices: 14064443--14064484 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
14064433 AATATAAAAG
* *
14064443 AAAAACAATAAAGAGGA
1 AAAAAAAATAAAGAAGA
*
14064460 AAAAAAAATAACGAAGA
1 AAAAAAAATAAAGAAGA
14064477 AAAAAAAA
1 AAAAAAAA
14064485 GAAAATGGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.79, C:0.05, G:0.12, T:0.05
Consensus pattern (17 bp):
AAAAAAAATAAAGAAGA
Found at i:14065382 original size:145 final size:141
Alignment explanation
Indices: 14065069--14065566 Score: 420
Period size: 145 Copynumber: 3.5 Consensus size: 141
14065059 TCTTGTGAAT
* * * * *
14065069 TTTGATTGCACCTCATAAGGGTG-AATTACCAAAATGCACTTTATGGGTATATTCATAA-TTGGC
1 TTTGATTGCACCTCAAAAGGGTGAAATTACCAAAATACACTTTAGGGGTATTTTCATAATTTGAC
* * *
14065132 CTTTTTGAGGT-AGGTTTTTTGTGAAACACTCCAGATCATAGTTTTAATATTATTCCATAAATTT
66 CTTTTTGAAGTCA-GTTTTTT-TGAAA-ACTCCAGATCA-AGCTTTAATATTATTTCATAAATTT
* * *
14065196 TGGAT-TATTGAAAAC
127 T-GATGCATTAAAAAA
* * *** * * *
14065211 CTTGATTGCACTTTTGGAATGTTGAAATTACCAAAATGAC-CTTTAGGGGTATTTTCGTAATTTG
1 TTTGATTGCAC-CTCAAAAGGGTGAAATTACCAAAAT-ACACTTTAGGGGTATTTTCATAATTTG
* * *
14065275 ACCATCTTGAAGTCAGTTTTTTCTCGAAAAGCTCCATATCAAGCTTTAATATTATTTCATAAATT
64 ACCTTTTTGAAGTCAGTTTTTT-T-GAAAA-CTCCAGATCAAGCTTTAATATTATTTCATAAATT
*
14065340 GTGATGCATTAAAAAA
126 TTGATGCATTAAAAAA
** * ** **
14065356 TTTGATTGCACCTCCAAAAGGGTGAAACCA-TAAAATACTTTTTAATGGTA-TTTCATAATTTGA
1 TTTGATTGCACCT-CAAAAGGGTGAAATTACCAAAATACACTTTAGGGGTATTTTCATAATTTGA
* * * *
14065419 CCTTTTTGAAGTC-GATTTTTTGTAAAAACT-CAGATCATGCTTTTATATTATTTCATGAATTTT
65 CCTTTTTGAAGTCAG-TTTTTT-TGAAAACTCCAGATCAAGCTTTAATATTATTTCATAAATTTT
* *
14065482 GATGCATTATAAAT
128 GATGCATTAAAAAA
* *** * * *
14065496 TTTGATTGCACCTCAAAAGGAGTAAAATTATTGAAATACCCTTTAGGGGTACTTTCATACTTTGA
1 TTTGATTGCACCTCAAAAGG-GTGAAATTACCAAAATACACTTTAGGGGTATTTTCATAATTTGA
14065561 CCTTTT
65 CCTTTT
14065567 CAAGGTTAGT
Statistics
Matches: 285, Mismatches: 57, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
139 7 0.02
140 59 0.21
141 17 0.06
142 33 0.12
143 38 0.13
144 46 0.16
145 71 0.25
146 14 0.05
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.40
Consensus pattern (141 bp):
TTTGATTGCACCTCAAAAGGGTGAAATTACCAAAATACACTTTAGGGGTATTTTCATAATTTGAC
CTTTTTGAAGTCAGTTTTTTTGAAAACTCCAGATCAAGCTTTAATATTATTTCATAAATTTTGAT
GCATTAAAAAA
Done.