Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 83 of 117
Found at i:15018666 original size:23 final size:24
Alignment explanation
Indices: 15018640--15018684 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
15018630 GAATCATCCT
15018640 TTTTCATTTTTTT-CCTTTTTTTG
1 TTTTCATTTTTTTACCTTTTTTTG
*
15018663 TTTTTATTTTTTTACCTTTTTT
1 TTTTCATTTTTTTACCTTTTTT
15018685 CTTTTAAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.07, C:0.11, G:0.02, T:0.80
Consensus pattern (24 bp):
TTTTCATTTTTTTACCTTTTTTTG
Found at i:15018689 original size:23 final size:24
Alignment explanation
Indices: 15018638--15018689 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
15018628 TTGAATCATC
15018638 CTTTTTCATTTTTTTCCTTTTTTT
1 CTTTTTCATTTTTTTCCTTTTTTT
*
15018662 GTTTTT-ATTTTTTTACC-TTTTTT
1 CTTTTTCATTTTTTT-CCTTTTTTT
15018685 CTTTT
1 CTTTT
15018690 AAGCATAGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 18 0.72
24 7 0.28
ACGTcount: A:0.06, C:0.13, G:0.02, T:0.79
Consensus pattern (24 bp):
CTTTTTCATTTTTTTCCTTTTTTT
Found at i:15024970 original size:15 final size:15
Alignment explanation
Indices: 15024952--15024980 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
15024942 CATCATATTT
15024952 TTTAAATTTTGGTAC
1 TTTAAATTTTGGTAC
15024967 TTTAAATTTTGGTA
1 TTTAAATTTTGGTA
15024981 GAATGACTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.03, G:0.14, T:0.55
Consensus pattern (15 bp):
TTTAAATTTTGGTAC
Found at i:15025640 original size:15 final size:15
Alignment explanation
Indices: 15025620--15025651 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
15025610 CTTTGTTAAG
*
15025620 TGTAATGAATGAGAA
1 TGTAATGAATGAAAA
15025635 TGTAATGAATGAAAA
1 TGTAATGAATGAAAA
15025650 TG
1 TG
15025652 CATGTATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.25, T:0.28
Consensus pattern (15 bp):
TGTAATGAATGAAAA
Found at i:15028749 original size:15 final size:17
Alignment explanation
Indices: 15028720--15028759 Score: 57
Period size: 15 Copynumber: 2.5 Consensus size: 17
15028710 ATTTAACATT
15028720 AAAAAAAATTCAAAAAG
1 AAAAAAAATTCAAAAAG
*
15028737 AAAAAAAA-T-AAAATG
1 AAAAAAAATTCAAAAAG
15028752 AAAAAAAA
1 AAAAAAAA
15028760 ATAATGATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 13 0.59
16 1 0.05
17 8 0.36
ACGTcount: A:0.82, C:0.03, G:0.05, T:0.10
Consensus pattern (17 bp):
AAAAAAAATTCAAAAAG
Found at i:15028880 original size:45 final size:45
Alignment explanation
Indices: 15028822--15028907 Score: 129
Period size: 45 Copynumber: 1.9 Consensus size: 45
15028812 TTTATATAAG
* *
15028822 GAAAATTGATACTTTCAACTTTTC-CTGAAAATGTTTTTTTTTAAA
1 GAAAATTGATACTTCCAACTTTTCTCT-AAAATATTTTTTTTTAAA
*
15028867 GAAAATTGGTACTTCCAACTTTTCTCTAAAATATTTTTTTT
1 GAAAATTGATACTTCCAACTTTTCTCTAAAATATTTTTTTT
15028908 GAAACTTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
45 35 0.95
46 2 0.05
ACGTcount: A:0.31, C:0.13, G:0.08, T:0.48
Consensus pattern (45 bp):
GAAAATTGATACTTCCAACTTTTCTCTAAAATATTTTTTTTTAAA
Found at i:15029118 original size:58 final size:58
Alignment explanation
Indices: 15028859--15029196 Score: 393
Period size: 58 Copynumber: 5.8 Consensus size: 58
15028849 AAAATGTTTT
* * * * *
15028859 TTTTTAAAGAAAATTGGTACTTCCAACTTTT-CTCTAAAATATTTTTTTTG-AAACTTTA
1 TTTTCAAAGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTAGAAAAC-TTA
* * * ** * *
15028917 ATTTC-AAGAAAATTTGACACTTTCAAATTTTTTTCAAAAACATTTTTTTA-AACAATTTA
1 TTTTCAAAGAAAA-TTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTAGAA-AACTTA
*
15028976 TTTT-TAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAA-TTA
1 TTTTCAAAG-AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAACTTA
* * * * *
15029033 TTTTCAAAAAAAATTGATACTTTCAACTTGTCATCGAAAATATCTTTTAGAAAACTTA
1 TTTTCAAAGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAACTTA
15029091 TTTTCAAAGAAAATTGATACTTTCAACTTTTCCTCAAAAA-ATTTTGTTAGAAAACTTA
1 TTTTCAAAGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTT-TTAGAAAACTTA
*
15029149 TTTTTAAAGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT
1 TTTTCAAAGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT
15029197 TTTTGAAATT
Statistics
Matches: 240, Mismatches: 29, Indels: 22
0.82 0.10 0.08
Matches are distributed among these distances:
57 59 0.25
58 120 0.50
59 55 0.23
60 6 0.03
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.43
Consensus pattern (58 bp):
TTTTCAAAGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAACTTA
Found at i:15029128 original size:30 final size:30
Alignment explanation
Indices: 15029094--15029186 Score: 77
Period size: 30 Copynumber: 3.2 Consensus size: 30
15029084 AAACTTATTT
15029094 TCAAAGAAAATTGATACTTTCAACTTTTCC
1 TCAAAGAAAATTGATACTTTCAACTTTTCC
* * *** *
15029124 TCAAA-AAATTTTGTTA--GAAAACTTATT-T
1 TCAAAGAAA-ATTGATACTTTCAACTT-TTCC
*
15029152 TTAAAGAAAATTGATACTTTCAACTTTTCC
1 TCAAAGAAAATTGATACTTTCAACTTTTCC
15029182 TCAAA
1 TCAAA
15029187 AATATTTTTT
Statistics
Matches: 43, Mismatches: 14, Indels: 12
0.62 0.20 0.17
Matches are distributed among these distances:
28 14 0.33
29 10 0.23
30 19 0.44
ACGTcount: A:0.40, C:0.15, G:0.06, T:0.39
Consensus pattern (30 bp):
TCAAAGAAAATTGATACTTTCAACTTTTCC
Found at i:15029244 original size:3 final size:3
Alignment explanation
Indices: 15029233--15029319 Score: 56
Period size: 3 Copynumber: 28.7 Consensus size: 3
15029223 ATTTAAAAAA
* * **
15029233 AAT AA- AAT AAT AA- AAT AA- AAT AAGG AAT ACT AAAT AAT TCT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT -AAT AAT AAT AAT
*
15029277 -AT AAT CAAT AAAT AAT AAT AAT AAT AAT AAAT AAT AGT AAT AA
1 AAT AAT -AAT -AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AA
15029320 ATAAATAAAA
Statistics
Matches: 65, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
2 8 0.12
3 44 0.68
4 13 0.20
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:15029249 original size:13 final size:13
Alignment explanation
Indices: 15029231--15029255 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15029221 GCATTTAAAA
15029231 AAAATAAAATAAT
1 AAAATAAAATAAT
15029244 AAAATAAAATAA
1 AAAATAAAATAA
15029256 GGAATACTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AAAATAAAATAAT
Found at i:15029291 original size:22 final size:19
Alignment explanation
Indices: 15029258--15029311 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 19
15029248 TAAAATAAGG
*
15029258 AATACTAAATAATTCTAATAT
1 AATAATAAATAA-T-TAATAT
15029279 AATCAATAAATAA-TAATAAT
1 AAT-AATAAATAATTAAT-AT
15029299 AATAATAAATAAT
1 AATAATAAATAAT
15029312 AGTAATAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
19 13 0.45
20 5 0.17
21 3 0.10
22 8 0.28
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (19 bp):
AATAATAAATAATTAATAT
Found at i:15029292 original size:16 final size:16
Alignment explanation
Indices: 15029273--15029327 Score: 65
Period size: 17 Copynumber: 3.2 Consensus size: 16
15029263 TAAATAATTC
*
15029273 TAATATAATCAATAAA
1 TAATATAATAAATAAA
15029289 TAATAATAATAATAATAAA
1 TAAT-ATAAT-A-AATAAA
15029308 TAATAGTAATAAATAAA
1 TAATA-TAATAAATAAA
15029325 TAA
1 TAA
15029328 AAACTTTTGG
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
16 4 0.12
17 14 0.41
18 2 0.06
19 14 0.41
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (16 bp):
TAATATAATAAATAAA
Found at i:15029299 original size:13 final size:13
Alignment explanation
Indices: 15029273--15029323 Score: 59
Period size: 13 Copynumber: 3.8 Consensus size: 13
15029263 TAAATAATTC
15029273 TAATATAATCAATAAA
1 TAATA-AAT-AAT-AA
15029289 TAAT-AATAATAA
1 TAATAAATAATAA
*
15029301 TAATAAATAATAG
1 TAATAAATAATAA
15029314 TAATAAATAA
1 TAATAAATAA
15029324 ATAAAAACTT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
12 6 0.18
13 20 0.61
14 3 0.09
16 4 0.12
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (13 bp):
TAATAAATAATAA
Found at i:15029308 original size:41 final size:40
Alignment explanation
Indices: 15029237--15029328 Score: 98
Period size: 41 Copynumber: 2.3 Consensus size: 40
15029227 AAAAAAAATA
* *
15029237 AAAT-AATAAAATAAAATAAGGAATACTAAATAATTCTAAT
1 AAATAAAT-AAATAAAATAAGGAATAATAAATAATACTAAT
* * *
15029277 ATAATCAATAAATAATAATAA-TAATAATAAATAATAGTAAT
1 A-AATAAATAAATAA-AATAAGGAATAATAAATAATACTAAT
15029318 AAATAAATAAA
1 AAATAAATAAA
15029329 AACTTTTGGA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
40 10 0.23
41 26 0.59
42 8 0.18
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.28
Consensus pattern (40 bp):
AAATAAATAAATAAAATAAGGAATAATAAATAATACTAAT
Found at i:15030163 original size:21 final size:22
Alignment explanation
Indices: 15030108--15030168 Score: 72
Period size: 21 Copynumber: 2.8 Consensus size: 22
15030098 AGATATATAT
*
15030108 ATATTAATAGATAACT-AAAAG
1 ATATTAATAGATAAATAAAAAG
* *
15030129 AAAATAATTAGATAAATAAAAAG
1 ATATTAA-TAGATAAATAAAAAG
15030152 -TATTAATAGATAAATAA
1 ATATTAATAGATAAATAA
15030169 TAATAATAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
21 16 0.48
22 12 0.36
23 5 0.15
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.28
Consensus pattern (22 bp):
ATATTAATAGATAAATAAAAAG
Found at i:15030172 original size:3 final size:3
Alignment explanation
Indices: 15030164--15030208 Score: 72
Period size: 3 Copynumber: 14.7 Consensus size: 3
15030154 TTAATAGATA
*
15030164 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAAA AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AA
15030209 AATTAAAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
3 37 0.95
4 2 0.05
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:15030608 original size:26 final size:25
Alignment explanation
Indices: 15030573--15030629 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
15030563 GTTATATTTG
15030573 TTAAT-TGTTTATGAA-TATGTTCAT
1 TTAATATGTTTATGAACT-TGTTCAT
* *
15030597 TTATATATGTTTGTGAACTTGTTCGT
1 TTA-ATATGTTTATGAACTTGTTCAT
15030623 TTAATAT
1 TTAATAT
15030630 TCACGAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
24 3 0.11
25 6 0.21
26 18 0.64
27 1 0.04
ACGTcount: A:0.26, C:0.05, G:0.14, T:0.54
Consensus pattern (25 bp):
TTAATATGTTTATGAACTTGTTCAT
Found at i:15039128 original size:20 final size:20
Alignment explanation
Indices: 15039103--15039142 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
15039093 ACCCGATTAA
15039103 AGTCAAAATTAGTCAAACTT
1 AGTCAAAATTAGTCAAACTT
* *
15039123 AGTCAATATTGGTCAAACTT
1 AGTCAAAATTAGTCAAACTT
15039143 GATGAAAACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (20 bp):
AGTCAAAATTAGTCAAACTT
Found at i:15040275 original size:146 final size:146
Alignment explanation
Indices: 15040011--15040304 Score: 588
Period size: 146 Copynumber: 2.0 Consensus size: 146
15040001 AAAAGAAAAT
15040011 AAGGGTGAATTGTGACCATAAGATGTTTTTTAATCCAAGGGTTAACATTGATTTGCATGGGGGAT
1 AAGGGTGAATTGTGACCATAAGATGTTTTTTAATCCAAGGGTTAACATTGATTTGCATGGGGGAT
15040076 ATTTTCATCATCTTCTTGGCTAGCCATTCATGTTAAAACTAATAAAAAAGCAAGGGAGAAAATGC
66 ATTTTCATCATCTTCTTGGCTAGCCATTCATGTTAAAACTAATAAAAAAGCAAGGGAGAAAATGC
15040141 AAAATAAAGGAAGGAA
131 AAAATAAAGGAAGGAA
15040157 AAGGGTGAATTGTGACCATAAGATGTTTTTTAATCCAAGGGTTAACATTGATTTGCATGGGGGAT
1 AAGGGTGAATTGTGACCATAAGATGTTTTTTAATCCAAGGGTTAACATTGATTTGCATGGGGGAT
15040222 ATTTTCATCATCTTCTTGGCTAGCCATTCATGTTAAAACTAATAAAAAAGCAAGGGAGAAAATGC
66 ATTTTCATCATCTTCTTGGCTAGCCATTCATGTTAAAACTAATAAAAAAGCAAGGGAGAAAATGC
15040287 AAAATAAAGGAAGGAA
131 AAAATAAAGGAAGGAA
15040303 AA
1 AA
15040305 TTGAGAAAAA
Statistics
Matches: 148, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
146 148 1.00
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.29
Consensus pattern (146 bp):
AAGGGTGAATTGTGACCATAAGATGTTTTTTAATCCAAGGGTTAACATTGATTTGCATGGGGGAT
ATTTTCATCATCTTCTTGGCTAGCCATTCATGTTAAAACTAATAAAAAAGCAAGGGAGAAAATGC
AAAATAAAGGAAGGAA
Found at i:15041259 original size:20 final size:20
Alignment explanation
Indices: 15041234--15041272 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
15041224 AAATCCCATG
15041234 AAACCCCAAAACCC-AAAACC
1 AAACCCC-AAACCCTAAAACC
15041254 AAACCCCAAACCCTAAAAC
1 AAACCCCAAACCCTAAAAC
15041273 TTAAACTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.54, C:0.44, G:0.00, T:0.03
Consensus pattern (20 bp):
AAACCCCAAACCCTAAAACC
Found at i:15041343 original size:39 final size:38
Alignment explanation
Indices: 15041252--15041389 Score: 120
Period size: 39 Copynumber: 3.5 Consensus size: 38
15041242 AAACCCAAAA
* * * *
15041252 CCAAACCCCAAACCCTAAAACTTAAACTTAAA-CATAAAC
1 CCAAA-CCTAAACCCTAAACCCTAAACTTAAACCA-AACC
*
15041291 TCAAACCTCAAACCCTAAACCCTAAACCTTAAACCAAACC
1 CCAAACCT-AAACCCTAAACCCTAAA-CTTAAACCAAACC
*
15041331 CCAAACCTAAA-CC-AAACCCTAAAATATAAACCCCAAACC
1 CCAAACCTAAACCCTAAACCCTAAACT-TAAA--CCAAACC
* *
15041370 TCAAACCTAAACCTTAAACC
1 CCAAACCTAAACCCTAAACC
15041390 TAACCCTAAA
Statistics
Matches: 82, Mismatches: 9, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
36 1 0.01
37 14 0.17
38 4 0.05
39 39 0.48
40 17 0.21
41 7 0.09
ACGTcount: A:0.49, C:0.37, G:0.00, T:0.14
Consensus pattern (38 bp):
CCAAACCTAAACCCTAAACCCTAAACTTAAACCAAACC
Found at i:15041383 original size:6 final size:6
Alignment explanation
Indices: 15041269--15041400 Score: 72
Period size: 6 Copynumber: 20.7 Consensus size: 6
15041259 CCAAACCCTA
* * *
15041269 AAACTT AAACTT AAACAT AAA-CT CAAACCT CAAACCCT AAACCCT AAACCTT
1 AAACCT AAACCT AAACCT AAACCT -AAACCT -AAA-CCT AAA-CCT AAACC-T
* ** *
15041321 AAACC- AAACCCC AAACCT AAACC- AAACCCT AAAATAT AAACCCC AAACCT
1 AAACCT AAA-CCT AAACCT AAACCT AAA-CCT -AAACCT AAA-CCT AAACCT
*
15041371 CAAACCT AAACCTT AAACCT AACCCT AAAC
1 -AAACCT AAACC-T AAACCT AAACCT AAAC
15041401 TACTCCAAAC
Statistics
Matches: 103, Mismatches: 11, Indels: 24
0.75 0.08 0.17
Matches are distributed among these distances:
5 7 0.07
6 49 0.48
7 41 0.40
8 6 0.06
ACGTcount: A:0.49, C:0.35, G:0.00, T:0.16
Consensus pattern (6 bp):
AAACCT
Found at i:15041383 original size:13 final size:13
Alignment explanation
Indices: 15041281--15041392 Score: 65
Period size: 13 Copynumber: 8.6 Consensus size: 13
15041271 ACTTAAACTT
*
15041281 AAACATAAA-CTC
1 AAACCTAAACCTC
15041293 AAACCTCAAACC-C
1 AAACCT-AAACCTC
*
15041306 TAAACCCTAAACCTT
1 -AAA-CCTAAACCTC
*
15041321 AAACC-AAACCCC
1 AAACCTAAACCTC
15041333 AAACCTAAA-C-C
1 AAACCTAAACCTC
* *
15041344 AAACCCTAAA-ATAT
1 AAA-CCTAAACCT-C
*
15041358 AAACCCCAAACCTC
1 AAA-CCTAAACCTC
*
15041372 AAACCTAAACCTT
1 AAACCTAAACCTC
15041385 AAACCTAA
1 AAACCTAA
15041393 CCCTAAACTA
Statistics
Matches: 79, Mismatches: 11, Indels: 19
0.72 0.10 0.17
Matches are distributed among these distances:
11 4 0.05
12 22 0.28
13 25 0.32
14 24 0.30
15 4 0.05
ACGTcount: A:0.50, C:0.36, G:0.00, T:0.14
Consensus pattern (13 bp):
AAACCTAAACCTC
Found at i:15041395 original size:64 final size:64
Alignment explanation
Indices: 15041293--15041417 Score: 164
Period size: 64 Copynumber: 2.0 Consensus size: 64
15041283 ACATAAACTC
*
15041293 AAACCTCAAACCCTAAACCCTAAACCTTAAACCAAACCCCAAACCTAAACCAAACCCTAAAATAT
1 AAACCCCAAACCCTAAACCCTAAACCTTAAACCAAACCCCAAA-CTAAACCAAACCCTAAAATAT
* * ** *
15041358 AAACCCCAAA-CCTCAAA-CCTAAACCTTAAACCTAACCCTAAACTACTCCAAACCTTAAAA
1 AAACCCCAAACCCT-AAACCCTAAACCTTAAACCAAACCCCAAACTAAACCAAACCCTAAAA
15041418 CCAATTATGC
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
63 15 0.28
64 26 0.49
65 12 0.23
ACGTcount: A:0.48, C:0.37, G:0.00, T:0.15
Consensus pattern (64 bp):
AAACCCCAAACCCTAAACCCTAAACCTTAAACCAAACCCCAAACTAAACCAAACCCTAAAATAT
Found at i:15042480 original size:25 final size:25
Alignment explanation
Indices: 15042445--15042500 Score: 87
Period size: 25 Copynumber: 2.2 Consensus size: 25
15042435 TGTGTGATTT
*
15042445 TCATTTTATGCATGA-TTTAATTATG
1 TCATTTCATGCAT-ATTTTAATTATG
15042470 TCATTTCATGCATATTTTAATTATG
1 TCATTTCATGCATATTTTAATTATG
15042495 TCATTT
1 TCATTT
15042501 ATTTTATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 1 0.03
25 28 0.97
ACGTcount: A:0.27, C:0.11, G:0.09, T:0.54
Consensus pattern (25 bp):
TCATTTCATGCATATTTTAATTATG
Found at i:15045649 original size:20 final size:20
Alignment explanation
Indices: 15045599--15045650 Score: 61
Period size: 19 Copynumber: 2.5 Consensus size: 20
15045589 TGAAGCCATT
15045599 AAAAGAAAAGAAAAAAAGAGAA
1 AAAAGAAAAG--AAAAAGAGAA
* *
15045621 AAATG-AAAGAAAAAGATAA
1 AAAAGAAAAGAAAAAGAGAA
15045640 AAAAGAAAAGA
1 AAAAGAAAAGA
15045651 GGGAAGAAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 13 0.50
20 5 0.19
21 4 0.15
22 4 0.15
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.04
Consensus pattern (20 bp):
AAAAGAAAAGAAAAAGAGAA
Found at i:15045657 original size:27 final size:27
Alignment explanation
Indices: 15045600--15045691 Score: 77
Period size: 28 Copynumber: 3.5 Consensus size: 27
15045590 GAAGCCATTA
*
15045600 AAAG-AAAAGAAAAAAAGAGAAAAATG
1 AAAGAAAAAGAAAAAAAGAGAAAAAGG
*
15045626 AAAGAAAAAGATAAAAAAGA-AAAGAGG
1 AAAGAAAAAGA-AAAAAAGAGAAAAAGG
* * *
15045653 ---GAAGAAGAAAAAAAGATAAAAAAG
1 AAAGAAAAAGAAAAAAAGAGAAAAAGG
*
15045677 AAATGAAAATGAAAA
1 AAA-GAAAAAGAAAA
15045692 TGGGAAAATA
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
23 8 0.15
24 12 0.23
26 4 0.08
27 11 0.21
28 17 0.33
ACGTcount: A:0.75, C:0.00, G:0.20, T:0.05
Consensus pattern (27 bp):
AAAGAAAAAGAAAAAAAGAGAAAAAGG
Found at i:15045675 original size:9 final size:8
Alignment explanation
Indices: 15045604--15045679 Score: 55
Period size: 9 Copynumber: 9.0 Consensus size: 8
15045594 CCATTAAAAG
15045604 AAAAGAAA
1 AAAAGAAA
15045612 AAAAGAGAA
1 AAAAGA-AA
*
15045621 AAATGAAAGA
1 AAAAG-AA-A
15045631 AAAAGATAA
1 AAAAGA-AA
15045640 AAAAG-AA
1 AAAAGAAA
* **
15045647 AAGAGGGA
1 AAAAGAAA
*
15045655 AGAAGAAA
1 AAAAGAAA
15045663 AAAAGATAA
1 AAAAGA-AA
15045672 AAAAGAAA
1 AAAAGAAA
15045680 TGAAAATGAA
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
7 6 0.11
8 18 0.34
9 22 0.42
10 7 0.13
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.04
Consensus pattern (8 bp):
AAAAGAAA
Found at i:15045675 original size:41 final size:40
Alignment explanation
Indices: 15045630--15045724 Score: 97
Period size: 41 Copynumber: 2.3 Consensus size: 40
15045620 AAAATGAAAG
15045630 AAAAAGATAA-AAAA-GAAAAGAGGGAAGAAGAAAA-AAAGATA
1 AAAAAGA-AAGAAAATGAAAA-AGGGAA-AAGAAAATAAA-ATA
* *
15045671 AAAAAGAAATGAAAATGAAAATGGGAAAATAAAATAAAATA
1 AAAAAGAAA-GAAAATGAAAAAGGGAAAAGAAAATAAAATA
15045712 AAAAAGAGAAGAA
1 AAAAAGA-AAGAA
15045725 GAAGAAATGA
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
40 2 0.04
41 26 0.55
42 14 0.30
43 5 0.11
ACGTcount: A:0.73, C:0.00, G:0.19, T:0.08
Consensus pattern (40 bp):
AAAAAGAAAGAAAATGAAAAAGGGAAAAGAAAATAAAATA
Found at i:15047637 original size:40 final size:40
Alignment explanation
Indices: 15047582--15047660 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
15047572 CTTTTATTCA
15047582 ATTCTCTCATTGGTGACAT-TCGAGTTTTCTACATGTTTTC
1 ATTCTCTCATTGGTGACATCT-GAGTTTTCTACATGTTTTC
* *
15047622 ATTCTCTCGA-TGGTGATATCTGAGTTTTCTATATGTTTT
1 ATTCTCTC-ATTGGTGACATCTGAGTTTTCTACATGTTTT
15047661 ATGATGATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 33 0.94
41 2 0.06
ACGTcount: A:0.18, C:0.16, G:0.16, T:0.49
Consensus pattern (40 bp):
ATTCTCTCATTGGTGACATCTGAGTTTTCTACATGTTTTC
Found at i:15047860 original size:103 final size:104
Alignment explanation
Indices: 15047681--15047869 Score: 246
Period size: 103 Copynumber: 1.8 Consensus size: 104
15047671 GGAGATTTTG
* * * *
15047681 TTTAAAACTCCACAGTGGTGATATCCTAACTTTTTCAAATCTTGATGGCGATATCTGAGTTTTAA
1 TTTAAAACTCCACAGTGGTGATATCCAAACTTTTTCAAATCTTGA-GGCAATATATGAGTTTCAA
15047746 ATTCCAAG-TTTT-CAAATCTCAGTGGTGTCATCCAAATA
65 ATTCCAAGTTTTTCCAAATCTCAGTGGTGTCATCCAAATA
15047784 TTTAAAACTCCTA-AGTGGTGATATCCAAACTTTTTCAAATCTTG-GAGCTAATATATGAGTGTT
1 TTTAAAACTCC-ACAGTGGTGATATCCAAACTTTTTCAAATCTTGAG-GC-AATATATGAGT-TT
15047847 CAAA-TCTC-AGTTTTTCCAAATCT
62 CAAATTC-CAAGTTTTTCCAAATCT
15047870 TGGTGATGAA
Statistics
Matches: 75, Mismatches: 4, Indels: 12
0.82 0.04 0.13
Matches are distributed among these distances:
101 1 0.01
102 2 0.03
103 54 0.72
104 11 0.15
105 7 0.09
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.38
Consensus pattern (104 bp):
TTTAAAACTCCACAGTGGTGATATCCAAACTTTTTCAAATCTTGAGGCAATATATGAGTTTCAAA
TTCCAAGTTTTTCCAAATCTCAGTGGTGTCATCCAAATA
Found at i:15048114 original size:24 final size:24
Alignment explanation
Indices: 15048061--15048114 Score: 56
Period size: 24 Copynumber: 2.2 Consensus size: 24
15048051 CTATCAATGG
** *
15048061 TGATATCTGAGTTTTCTTCAGTGA
1 TGATATCCAAGTTTTCTTCAGCGA
*
15048085 TAATATCCAAGTTTTCTTC-GACGA
1 TGATATCCAAGTTTTCTTCAG-CGA
15048109 TGATAT
1 TGATAT
15048115 TTGAAGTCAT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
23 1 0.04
24 23 0.96
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.43
Consensus pattern (24 bp):
TGATATCCAAGTTTTCTTCAGCGA
Found at i:15049183 original size:19 final size:19
Alignment explanation
Indices: 15049143--15049183 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
15049133 AACATTAATC
* *
15049143 AAACTTAGTCAAAATTGTT
1 AAACTTAGTCAAAATAGAT
*
15049162 AAACTTAGTGAAAATAGAT
1 AAACTTAGTCAAAATAGAT
15049181 AAA
1 AAA
15049184 ACCGGGGTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.07, G:0.12, T:0.29
Consensus pattern (19 bp):
AAACTTAGTCAAAATAGAT
Found at i:15052000 original size:13 final size:15
Alignment explanation
Indices: 15051972--15052016 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 15
15051962 GTTATTATTT
*
15051972 ATAATTTTTTAATTTA
1 ATAATTTTTTAA-TAA
15051988 ATAATATTTTTTAATAA
1 AT-A-ATTTTTTAATAA
15052005 ATAATTTTTTAA
1 ATAATTTTTTAA
15052017 AAAACGTCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 9 0.35
16 3 0.12
17 5 0.19
18 9 0.35
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATAATTTTTTAATAA
Found at i:15052007 original size:17 final size:18
Alignment explanation
Indices: 15051975--15052014 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
15051965 ATTATTTATA
*
15051975 ATTTTTTAATTTAATAAT
1 ATTTTTTAATTAAATAAT
15051993 ATTTTTTAA-TAAATAAT
1 ATTTTTTAATTAAATAAT
15052010 -TTTTT
1 ATTTTT
15052015 AAAAAACGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 5 0.24
17 7 0.33
18 9 0.43
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTTTTAATTAAATAAT
Found at i:15052013 original size:16 final size:17
Alignment explanation
Indices: 15051972--15052014 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
15051962 GTTATTATTT
*
15051972 ATAA-TTTTTTAATTTA
1 ATAATTTTTTTAATTAA
15051988 ATAATATTTTTTAA-TAA
1 ATAAT-TTTTTTAATTAA
15052005 ATAATTTTTT
1 ATAATTTTTT
15052015 AAAAAACGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 9 0.38
17 7 0.29
18 8 0.33
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATAATTTTTTTAATTAA
Found at i:15053782 original size:18 final size:18
Alignment explanation
Indices: 15053756--15053792 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
15053746 TTATATATAT
*
15053756 TAAAAATAAATTAATAAA
1 TAAAAATAAATAAATAAA
*
15053774 TAAATATAAATAAATAAA
1 TAAAAATAAATAAATAAA
15053792 T
1 T
15053793 TATTTAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (18 bp):
TAAAAATAAATAAATAAA
Found at i:15056833 original size:31 final size:33
Alignment explanation
Indices: 15056798--15056868 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 33
15056788 ATGCCATGTT
*
15056798 ATAATATAA-A-AATATATGA-AAAAATACAAAA
1 ATAATATAATATAA-ATATGATAAAAATAAAAAA
*
15056829 ATAATATAATATAAATTTGATAAAAATAAAAAA
1 ATAATATAATATAAATATGATAAAAATAAAAAA
*
15056862 ATTATAT
1 ATAATAT
15056869 TTTATGTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 9 0.26
32 6 0.18
33 19 0.56
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (33 bp):
ATAATATAATATAAATATGATAAAAATAAAAAA
Found at i:15060235 original size:3 final size:3
Alignment explanation
Indices: 15060227--15060261 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
15060217 GCTCTATTTC
15060227 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
15060262 TTAAGTCTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:15067721 original size:2 final size:2
Alignment explanation
Indices: 15067714--15067738 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15067704 GCCACAAGTG
15067714 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
15067739 AGAGAAGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15078428 original size:16 final size:16
Alignment explanation
Indices: 15078400--15078448 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
15078390 TTAAAATTTT
* *
15078400 ATTTTTTAAATTA-CA
1 ATTTTTTATATTATAA
15078415 ATTATTTTATATTATAA
1 ATT-TTTTATATTATAA
*
15078432 ATTTTTTATATTTTAA
1 ATTTTTTATATTATAA
15078448 A
1 A
15078449 ATTAATCTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
15 3 0.10
16 22 0.76
17 4 0.14
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (16 bp):
ATTTTTTATATTATAA
Found at i:15079315 original size:16 final size:15
Alignment explanation
Indices: 15079286--15079320 Score: 52
Period size: 17 Copynumber: 2.2 Consensus size: 15
15079276 TTAAATAAAT
15079286 AAAACTAAAAAAAAA
1 AAAACTAAAAAAAAA
15079301 AAAACCTAAACAAAAAA
1 AAAA-CTAAA-AAAAAA
15079318 AAA
1 AAA
15079321 TGAAAAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.22
16 5 0.28
17 9 0.50
ACGTcount: A:0.83, C:0.11, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAACTAAAAAAAAA
Found at i:15079897 original size:21 final size:21
Alignment explanation
Indices: 15079873--15079925 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
15079863 CGCCAATTCT
*
15079873 TTCCTTATTCTTTT-ATGTTCA
1 TTCCCTATT-TTTTCATGTTCA
*
15079894 TTCCCTCTTTTTTCATGTTCA
1 TTCCCTATTTTTTCATGTTCA
*
15079915 TTCCCTCTTTT
1 TTCCCTATTTT
15079926 GTTGACTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 4 0.14
21 25 0.86
ACGTcount: A:0.09, C:0.26, G:0.04, T:0.60
Consensus pattern (21 bp):
TTCCCTATTTTTTCATGTTCA
Found at i:15079925 original size:20 final size:20
Alignment explanation
Indices: 15079883--15079925 Score: 77
Period size: 21 Copynumber: 2.1 Consensus size: 20
15079873 TTCCTTATTC
15079883 TTTTATGTTCATTCCCTCTT
1 TTTTATGTTCATTCCCTCTT
15079903 TTTTCATGTTCATTCCCTCTT
1 TTTT-ATGTTCATTCCCTCTT
15079924 TT
1 TT
15079926 GTTGACTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.09, C:0.26, G:0.05, T:0.60
Consensus pattern (20 bp):
TTTTATGTTCATTCCCTCTT
Found at i:15080833 original size:61 final size:61
Alignment explanation
Indices: 15080738--15080856 Score: 211
Period size: 61 Copynumber: 2.0 Consensus size: 61
15080728 ACATGGATGG
*
15080738 ATCCCTTTACAACAAGTTCAGCCATGTTTAACAAATCACCTTCCATAATTAGTATAAAATT
1 ATCCCTTTACAACAAGTTCAGCCATGTTTAACAAACCACCTTCCATAATTAGTATAAAATT
* *
15080799 ATCCCTTTACAACAAGTTCAGTCATGTTTAACAAACCACCTTCTATAATTAGTATAAA
1 ATCCCTTTACAACAAGTTCAGCCATGTTTAACAAACCACCTTCCATAATTAGTATAAA
15080857 CTTAACTTTA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 55 1.00
ACGTcount: A:0.38, C:0.23, G:0.07, T:0.33
Consensus pattern (61 bp):
ATCCCTTTACAACAAGTTCAGCCATGTTTAACAAACCACCTTCCATAATTAGTATAAAATT
Found at i:15081137 original size:17 final size:17
Alignment explanation
Indices: 15081115--15081148 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15081105 ATCAATCCAA
* *
15081115 TTAAAATAATAAAAGAC
1 TTAAAACAACAAAAGAC
15081132 TTAAAACAACAAAAGAC
1 TTAAAACAACAAAAGAC
15081149 ATTTTTGTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.12, G:0.06, T:0.18
Consensus pattern (17 bp):
TTAAAACAACAAAAGAC
Found at i:15083021 original size:15 final size:15
Alignment explanation
Indices: 15083001--15083030 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
15082991 CAAAAGCAAA
15083001 ACCAATACCAAGACT
1 ACCAATACCAAGACT
15083016 ACCAATACCAAGACT
1 ACCAATACCAAGACT
15083031 CATAGTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.33, G:0.07, T:0.13
Consensus pattern (15 bp):
ACCAATACCAAGACT
Found at i:15086541 original size:3 final size:3
Alignment explanation
Indices: 15086533--15086561 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
15086523 TTTTATTTAT
15086533 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
15086562 TCATACAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:15086774 original size:10 final size:10
Alignment explanation
Indices: 15086759--15086788 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
15086749 ATCAATTTTT
15086759 TATATTTTAA
1 TATATTTTAA
15086769 TATATTTTAA
1 TATATTTTAA
15086779 T-TATTTTAA
1 TATATTTTAA
15086788 T
1 T
15086789 TAAAAAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (10 bp):
TATATTTTAA
Found at i:15086783 original size:9 final size:9
Alignment explanation
Indices: 15086761--15086790 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
15086751 CAATTTTTTA
15086761 TATTTTAAT
1 TATTTTAAT
15086770 ATATTTTAAT
1 -TATTTTAAT
15086780 TATTTTAAT
1 TATTTTAAT
15086789 TA
1 TA
15086791 AAAAATTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (9 bp):
TATTTTAAT
Found at i:15090617 original size:165 final size:165
Alignment explanation
Indices: 15090345--15090676 Score: 637
Period size: 165 Copynumber: 2.0 Consensus size: 165
15090335 TCCACATTTG
15090345 CAATAGCTTCATTGGAACTCATATTTGACAAAAAAAATGTAATTAATAAATAATGCATTTGCAAC
1 CAATAGCTTCATTGGAACTCATATTTGACAAAAAAAATGTAATTAATAAATAATGCATTTGCAAC
15090410 CCTTTACATAAACACAAGATATACATTAAAGTTACTTACATTTTAATTATTTTTGTTTGAACACT
66 CCTTTACATAAACACAAGATATACATTAAAGTTACTTACATTTTAATTATTTTTGTTTGAACACT
15090475 CTTTGGAGATGTATCAGAGGTGAAAATAATTTTTA
131 CTTTGGAGATGTATCAGAGGTGAAAATAATTTTTA
*
15090510 CAATAGCTTCATTGGAACTTATATTTGACAAAAAAAATGTAATTAATAAATAATGCATTTGCAAC
1 CAATAGCTTCATTGGAACTCATATTTGACAAAAAAAATGTAATTAATAAATAATGCATTTGCAAC
*
15090575 CCTTTACATAAACATAAGATATACATTAAAGTTACTTACATTTTAATTATTTTTGTTTGAACACT
66 CCTTTACATAAACACAAGATATACATTAAAGTTACTTACATTTTAATTATTTTTGTTTGAACACT
*
15090640 CTTTGGAGATGTATCGGAGGTGAAAATAATTTTTA
131 CTTTGGAGATGTATCAGAGGTGAAAATAATTTTTA
15090675 CA
1 CA
15090677 TCTCATGTTT
Statistics
Matches: 164, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
165 164 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (165 bp):
CAATAGCTTCATTGGAACTCATATTTGACAAAAAAAATGTAATTAATAAATAATGCATTTGCAAC
CCTTTACATAAACACAAGATATACATTAAAGTTACTTACATTTTAATTATTTTTGTTTGAACACT
CTTTGGAGATGTATCAGAGGTGAAAATAATTTTTA
Found at i:15090746 original size:12 final size:11
Alignment explanation
Indices: 15090726--15090751 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15090716 GCTATCACCA
15090726 TTTTCTTTTTT
1 TTTTCTTTTTT
15090737 TTTTCTTTTTT
1 TTTTCTTTTTT
15090748 TTTT
1 TTTT
15090752 ACGTACCATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTCTTTTTT
Found at i:15095269 original size:23 final size:23
Alignment explanation
Indices: 15095243--15095291 Score: 82
Period size: 22 Copynumber: 2.2 Consensus size: 23
15095233 AAAACCTTTA
*
15095243 TTGAATAATCAAGAAACAATTTT
1 TTGAAGAATCAAGAAACAATTTT
15095266 TTG-AGAATCAAGAAACAATTTT
1 TTGAAGAATCAAGAAACAATTTT
15095288 TTGA
1 TTGA
15095292 GGTACAAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 21 0.88
23 3 0.12
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.35
Consensus pattern (23 bp):
TTGAAGAATCAAGAAACAATTTT
Found at i:15095302 original size:22 final size:22
Alignment explanation
Indices: 15095249--15095292 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
15095239 TTTATTGAAT
15095249 AATCAAGAAACAATTTTTTGAG
1 AATCAAGAAACAATTTTTTGAG
15095271 AATCAAGAAACAATTTTTTGAG
1 AATCAAGAAACAATTTTTTGAG
15095293 GTACAAGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.32
Consensus pattern (22 bp):
AATCAAGAAACAATTTTTTGAG
Found at i:15097384 original size:35 final size:35
Alignment explanation
Indices: 15097309--15097385 Score: 91
Period size: 35 Copynumber: 2.2 Consensus size: 35
15097299 TTTTTTCTTT
* ** *
15097309 CATTATTGCTTTGATACAATAGCCTATTTGGTTTA
1 CATTATTGCTTTAATACAATAGCCTATTCAGCTTA
* * *
15097344 TATTATTGTTTTAATATAATAGCCTATTCAGCTTA
1 CATTATTGCTTTAATACAATAGCCTATTCAGCTTA
15097379 CATTATT
1 CATTATT
15097386 TAAGTTACTT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.29, C:0.13, G:0.10, T:0.48
Consensus pattern (35 bp):
CATTATTGCTTTAATACAATAGCCTATTCAGCTTA
Found at i:15101979 original size:35 final size:35
Alignment explanation
Indices: 15101917--15101985 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
15101907 ATTCAATTAT
* * *
15101917 TTTGATACAATAGCCTATTTAGCTTACATTATTTC
1 TTTGATACAATAGCCTATTAAACTTACAATATTTC
*
15101952 TTTGATACAATA-CTCTATTAAATTTACAATATTT
1 TTTGATACAATAGC-CTATTAAACTTACAATATTT
15101986 AAGTTACTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 1 0.03
35 28 0.97
ACGTcount: A:0.33, C:0.14, G:0.06, T:0.46
Consensus pattern (35 bp):
TTTGATACAATAGCCTATTAAACTTACAATATTTC
Found at i:15102703 original size:18 final size:18
Alignment explanation
Indices: 15102680--15102721 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
15102670 CATTTGGTAG
15102680 ATTTGGGTCACATGGCAA
1 ATTTGGGTCACATGGCAA
* **
15102698 ATTTGGGTTATTTGGCAA
1 ATTTGGGTCACATGGCAA
15102716 ATTTGG
1 ATTTGG
15102722 AGGTATATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.24, C:0.10, G:0.29, T:0.38
Consensus pattern (18 bp):
ATTTGGGTCACATGGCAA
Found at i:15104264 original size:33 final size:33
Alignment explanation
Indices: 15104222--15104293 Score: 110
Period size: 33 Copynumber: 2.2 Consensus size: 33
15104212 CAAGTTCATC
* *
15104222 AGTTTATGCTTTGTTT-TACTTGAGAATAAAATA
1 AGTTTATGCTTT-TTTCTACTTAAGAATAAAAGA
15104255 AGTTTATGCTTTTTTCTACTTAAGAATAAAAGA
1 AGTTTATGCTTTTTTCTACTTAAGAATAAAAGA
15104288 AGTTTA
1 AGTTTA
15104294 AGATGCTAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
32 3 0.08
33 33 0.92
ACGTcount: A:0.35, C:0.07, G:0.14, T:0.44
Consensus pattern (33 bp):
AGTTTATGCTTTTTTCTACTTAAGAATAAAAGA
Found at i:15108840 original size:20 final size:20
Alignment explanation
Indices: 15108793--15108841 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
15108783 GGTTCATTAT
*
15108793 TTTATTTTTATTCTCTTTTC
1 TTTATTTTTATTCTCTTTTA
* *
15108813 TTTTTTTTTATT-TTTTTTA
1 TTTATTTTTATTCTCTTTTA
*
15108832 TTTAATTTTA
1 TTTATTTTTA
15108842 AGAAAATGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.80
Consensus pattern (20 bp):
TTTATTTTTATTCTCTTTTA
Found at i:15108950 original size:137 final size:137
Alignment explanation
Indices: 15108704--15109113 Score: 696
Period size: 137 Copynumber: 3.0 Consensus size: 137
15108694 CAGAACAGAG
*
15108704 AAGAAAATGAAAAAACGAAAAGAAAAGCTTTTGAGACGAATATTAGATGCTCAATGGTTAGCCCT
1 AAGAAAATGAAAGAACGAAAAGAAAAGCTTTTGAGACGAATATTAGATGCTCAATGGTTAGCCCT
* * *
15108769 TTCAACCTTTTTTAGGTTCATTATTTTATTTTTATTCTCTTTTCTTTTTTTTTATTTTTTTTATT
66 TTTAACCTTTTTTAGGTTCATTATTTTATTTTTATTCTCTTTTCTATTTTTTTATCTTTTTTATT
15108834 TAATTTT
131 TAATTTT
* *
15108841 AAGAAAATGAAAGAACGAAAAGAAAAGCTTTTGAGACGAATATTAGATGTTCAATGGTTAGCCTT
1 AAGAAAATGAAAGAACGAAAAGAAAAGCTTTTGAGACGAATATTAGATGCTCAATGGTTAGCCCT
*
15108906 TTTAACCTTTTTTAGGTTTATTATTTTATTTTTATTCTCTTTTCTATTTTTTTATCTTTTTTATT
66 TTTAACCTTTTTTAGGTTCATTATTTTATTTTTATTCTCTTTTCTATTTTTTTATCTTTTTTATT
15108971 TAATTTT
131 TAATTTT
* * * *
15108978 AAGAAAACGAAAGAACGAAAAGAAAAGTTTTTGAGACTATTATTAGATGCTCAATGGTTAGCCCT
1 AAGAAAATGAAAGAACGAAAAGAAAAGCTTTTGAGACGAATATTAGATGCTCAATGGTTAGCCCT
* *
15109043 TTTAACCTTTTTTAGGTTCATTATTTTATTTTTATTTTATTTT-TATTTTTTTATCTTTTTTATT
66 TTTAACCTTTTTTAGGTTCATTATTTTATTTTTATTCTCTTTTCTATTTTTTTATCTTTTTTATT
15109107 TAATTTT
131 TAATTTT
15109114 TTCATTTTCA
Statistics
Matches: 257, Mismatches: 16, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
136 28 0.11
137 229 0.89
ACGTcount: A:0.30, C:0.10, G:0.11, T:0.49
Consensus pattern (137 bp):
AAGAAAATGAAAGAACGAAAAGAAAAGCTTTTGAGACGAATATTAGATGCTCAATGGTTAGCCCT
TTTAACCTTTTTTAGGTTCATTATTTTATTTTTATTCTCTTTTCTATTTTTTTATCTTTTTTATT
TAATTTT
Found at i:15108963 original size:17 final size:18
Alignment explanation
Indices: 15108932--15108971 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
15108922 TTTATTATTT
*
15108932 TATTTTTATTCTCTTTTC
1 TATTTTTATTATCTTTTC
*
15108950 TATTTTT-TTATCTTTTT
1 TATTTTTATTATCTTTTC
15108967 TATTT
1 TATTT
15108972 AATTTTAAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (18 bp):
TATTTTTATTATCTTTTC
Found at i:15109079 original size:11 final size:11
Alignment explanation
Indices: 15109063--15109091 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
15109053 TTTAGGTTCA
15109063 TTATTTTATTT
1 TTATTTTATTT
15109074 TTATTTTATTT
1 TTATTTTATTT
15109085 TTATTTT
1 TTATTTT
15109092 TTTATCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (11 bp):
TTATTTTATTT
Found at i:15109101 original size:9 final size:8
Alignment explanation
Indices: 15109066--15109135 Score: 54
Period size: 8 Copynumber: 8.1 Consensus size: 8
15109056 AGGTTCATTA
15109066 TTTTATTT
1 TTTTATTT
15109074 TTATT-TTAT
1 TT-TTATT-T
15109083 TTTTATTT
1 TTTTATTT
15109091 TTTTATCTT
1 TTTTAT-TT
15109100 TTTTATTT
1 TTTTATTT
15109108 AATTTT-TTCAT
1 --TTTTATT--T
*
15109119 TTTCATTT
1 TTTTATTT
15109127 TTTTATTT
1 TTTTATTT
15109135 T
1 T
15109136 CATGAATAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 18
0.72 0.03 0.25
Matches are distributed among these distances:
8 24 0.47
9 20 0.39
10 6 0.12
11 1 0.02
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (8 bp):
TTTTATTT
Found at i:15109121 original size:27 final size:28
Alignment explanation
Indices: 15109071--15109134 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
15109061 CATTATTTTA
* * *
15109071 TTTTTATTTTATTTTTAT-TTTTTTATCT
1 TTTTTATTTAATTTTTATCATTTTCAT-T
15109099 TTTTTATTTAATTTTT-TCATTTTCATT
1 TTTTTATTTAATTTTTATCATTTTCATT
15109126 TTTTTATTT
1 TTTTTATTT
15109135 TCATGAATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 11 0.34
28 21 0.66
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.80
Consensus pattern (28 bp):
TTTTTATTTAATTTTTATCATTTTCATT
Found at i:15109136 original size:14 final size:14
Alignment explanation
Indices: 15109071--15109138 Score: 70
Period size: 14 Copynumber: 4.9 Consensus size: 14
15109061 CATTATTTTA
15109071 TTTTTATTTT-ATT
1 TTTTTATTTTCATT
*
15109084 TTTATT-TTTTTATCT
1 TTT-TTATTTTCAT-T
*
15109099 TTTTTA-TTTAATT
1 TTTTTATTTTCATT
*
15109112 TTTTCATTTTCATT
1 TTTTTATTTTCATT
15109126 TTTTTATTTTCAT
1 TTTTTATTTTCAT
15109139 GAATAAATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
13 13 0.28
14 29 0.63
15 4 0.09
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTTATTTTCATT
Found at i:15111398 original size:30 final size:31
Alignment explanation
Indices: 15111344--15111413 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 31
15111334 ATTTTTTAAT
* *
15111344 TAAT-TTTTTAATTATATATATATTTATATAA
1 TAATATTTTTAA-TATATATATATTTAAAAAA
* *
15111375 TGATATTTTTAA-ATATTTATATTTAAAAAA
1 TAATATTTTTAATATATATATATTTAAAAAA
15111405 TAATATTTT
1 TAATATTTT
15111414 ATATTTTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
30 23 0.70
31 3 0.09
32 7 0.21
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (31 bp):
TAATATTTTTAATATATATATATTTAAAAAA
Found at i:15111416 original size:21 final size:22
Alignment explanation
Indices: 15111386--15111437 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
15111376 GATATTTTTA
15111386 AATA-TTTATA-TTTAAAAAAT
1 AATATTTTATATTTTAAAAAAT
15111406 AATATTTTATATTTTAAAAAAT
1 AATATTTTATATTTTAAAAAAT
15111428 AATATTTTAT
1 AATATTTTAT
15111438 TAATTTCGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 4 0.13
21 6 0.20
22 20 0.67
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
AATATTTTATATTTTAAAAAAT
Found at i:15117400 original size:20 final size:19
Alignment explanation
Indices: 15117373--15117415 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
15117363 CTTTAATTAC
15117373 CCCTAAACCCTAAACTAAA
1 CCCTAAACCCTAAACTAAA
* *
15117392 CCCTCAAACTCTAACCTAAA
1 CCCT-AAACCCTAAACTAAA
15117412 CCCT
1 CCCT
15117416 TAAATGTTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.40, C:0.42, G:0.00, T:0.19
Consensus pattern (19 bp):
CCCTAAACCCTAAACTAAA
Found at i:15117484 original size:17 final size:17
Alignment explanation
Indices: 15117455--15117508 Score: 72
Period size: 17 Copynumber: 3.1 Consensus size: 17
15117445 CCAATTCCCT
*
15117455 AACCTTAAACCAACCTA
1 AACCCTAAACCAACCTA
*
15117472 AACCCTAAGCCAACCTA
1 AACCCTAAACCAACCTA
*
15117489 AACCTTAAACCAAACCTA
1 AACCCTAAACC-AACCTA
15117507 AA
1 AA
15117509 ATCGAACCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
17 24 0.75
18 8 0.25
ACGTcount: A:0.48, C:0.35, G:0.02, T:0.15
Consensus pattern (17 bp):
AACCCTAAACCAACCTA
Found at i:15117593 original size:17 final size:17
Alignment explanation
Indices: 15117573--15117622 Score: 64
Period size: 18 Copynumber: 2.9 Consensus size: 17
15117563 CAACATCTTT
15117573 AAAACTAAAACAAACCC
1 AAAACTAAAACAAACCC
*
15117590 AAAAATAAAAACAAACCC
1 AAAACT-AAAACAAACCC
* *
15117608 AAAACCAAACCAAAC
1 AAAACTAAAACAAAC
15117623 TAAATCGAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 13 0.46
18 15 0.54
ACGTcount: A:0.68, C:0.28, G:0.00, T:0.04
Consensus pattern (17 bp):
AAAACTAAAACAAACCC
Found at i:15117650 original size:24 final size:25
Alignment explanation
Indices: 15117622--15117688 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
15117612 CCAAACCAAA
*
15117622 CTAAATCGAACCAAATCCC-TAAAC
1 CTAAATCGAACCAAAACCCATAAAC
* *
15117646 CTAAACCCAACCAAAACCCATAAAC
1 CTAAATCGAACCAAAACCCATAAAC
* *
15117671 CCAAATTGAACCAAAACC
1 CTAAATCGAACCAAAACC
15117689 AACCCCAAAC
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
24 16 0.46
25 19 0.54
ACGTcount: A:0.49, C:0.36, G:0.03, T:0.12
Consensus pattern (25 bp):
CTAAATCGAACCAAAACCCATAAAC
Found at i:15117798 original size:19 final size:19
Alignment explanation
Indices: 15117776--15117812 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
15117766 ACCAACCCCC
15117776 AAACCCTAAC-CTAAACCCT
1 AAACCCT-ACTCTAAACCCT
15117795 AAACCCTACTCTAAACCC
1 AAACCCTACTCTAAACCC
15117813 CAAATCCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.41, C:0.43, G:0.00, T:0.16
Consensus pattern (19 bp):
AAACCCTACTCTAAACCCT
Found at i:15121588 original size:5 final size:5
Alignment explanation
Indices: 15121575--15121604 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
15121565 TCCTTGTTTC
*
15121575 CTTCT CTTCA CTTCA CTTCA CTTCA CTTCA
1 CTTCA CTTCA CTTCA CTTCA CTTCA CTTCA
15121605 AATTTTCTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.40, G:0.00, T:0.43
Consensus pattern (5 bp):
CTTCA
Found at i:15125367 original size:129 final size:128
Alignment explanation
Indices: 15125205--15125715 Score: 459
Period size: 129 Copynumber: 4.0 Consensus size: 128
15125195 TATTCGTAAC
* * * * * *
15125205 GACAACAAAAAGTTGTTACAAAAACCTTATTTTATTTGTAACGATTTTTCAATGTCATTACTTAA
1 GACAACAAAAAGTTATTGCGAAAA-CTT-TTTTATTTGCAACGATTTTTCAATGTCGTTGCTTAA
* * *
15125270 GTTA-TTTTTAATATTTTATACAATAATAAAAAAGTTATTACAAAAAATTCTATCATATTTGTTA
64 GTTATTTTTTAATATTTTATATAATAACAAAAAAGTTATTACAAAAAATT-TATAATATTTGTTA
15125334 T
128 T
* * * * * *
15125335 GACAACAAAAAGTTATTGCGTAAACTTGTTTTATGTGCAACGATTTTTTAAAGTTGTTGCTTTAG
1 GACAACAAAAAGTTATTGCGAAAACTT-TTTTATTTGCAACGATTTTTCAATGTCGTTGCTTAAG
* * *
15125400 TTATTTTTTTAATATTTTATATAATAACAAACTAAGTTGTTACAAAAAAATTTATAATATTTGTA
65 TTA-TTTTTTAATATTTTATATAATAACAAA-AAAGTTATTAC-AAAAAATTTATAATATTTGTT
15125465 AT
127 AT
* * * * *
15125467 AACAA-AAAAAGTTATTGC-AAAAATTTGTTATTTGCAATC-ATTTTTTAATGTTGTTGCTTAAG
1 GACAACAAAAAGTTATTGCGAAAACTTTTTTATTTGCAA-CGATTTTTCAATGTCGTTGCTTAAG
** * * *
15125529 TTATTTTTTAAATATTTTATATAACGACAGAAGAGTTATTACGAAAAATTTTATAATA-TTG-TA
65 TTATTTTTT-AATATTTTATATAATAACAAAAAAGTTATTAC-AAAAAATTTATAATATTTGTTA
15125592 -
128 T
* * * ** *
15125592 -ACAAAAAAAAGTTA-T--GAAAACTTTTTTTAGTTGCAACGATTTTTCAGTGTCCCTGCTTAAT
1 GACAACAAAAAGTTATTGCGAAAAC-TTTTTTATTTGCAACGATTTTTCAATGTCGTTGCTTAAG
* ** * **
15125653 TTATATTTTTCAGTATTTTATATAACGACAAAAAAGTTGTTACGAAAATTTTTATAATATTTG
65 TTAT-TTTTT-AATATTTTATATAATAACAAAAAAGTTATTAC-AAAAAATTTATAATATTTG
15125716 GAACAATGAA
Statistics
Matches: 319, Mismatches: 50, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
123 5 0.02
124 38 0.12
125 57 0.18
126 4 0.01
127 3 0.01
128 28 0.09
129 87 0.27
130 26 0.08
131 37 0.12
132 26 0.08
133 8 0.03
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.43
Consensus pattern (128 bp):
GACAACAAAAAGTTATTGCGAAAACTTTTTTATTTGCAACGATTTTTCAATGTCGTTGCTTAAGT
TATTTTTTAATATTTTATATAATAACAAAAAAGTTATTACAAAAAATTTATAATATTTGTTAT
Found at i:15126157 original size:128 final size:127
Alignment explanation
Indices: 15125771--15126157 Score: 361
Period size: 131 Copynumber: 3.0 Consensus size: 127
15125761 TAAGTTTTCA
* * * * *
15125771 ATTTTATTTGCAATAAATTTTTAATGTCGTTGCTTAATTTATTTTTTTAATATTTAATATAAT-A
1 ATTTTATTTGTAATGATTTTTTAATGTCATTGCTTAA-TTATTTTTTTAATATTT-ATACAATGA
* * *
15125835 ACAAAAAAGTTGTTATGAAAATTTTTATCATATTTGTAA-AATTTAAAATTTATTGTTGCGAAAA
64 A-AAAAAA-TTATTATGAAAATTTTTATAATATTTGTAACAA-TAAAAATTT-TTGTTGC-AAAA
15125899 -CTC
124 TCTC
* * * * * * *
15125902 GTTTTCTTTGTAACGATTTTTCAACGTCATTGCTTAATTTATTTTTTTAATATTTTATGCAACGA
1 ATTTTATTTGTAATGATTTTTTAATGTCATTGCTTAA-TTATTTTTTTAATA-TTTATACAATGA
* * * * * * * *
15125967 AAAAAAAATATTATAAAAATTTTTTATTATATTTATAACGATAAAAAATTATTGTTGAAAAATTT
64 AAAAAAATTATTATGAAAA-TTTTTATAATATTTGTAACAAT-AAAAATTTTTGTTGCAAAATCT
*
15126032 T
127 C
* *
15126033 ATTTTATTTGTAATGATTTTTTAATGTCATTGTTTAA-T-TTCTTTTAATATTCTATACAATGAT
1 ATTTTATTTGTAATGATTTTTTAATGTCATTGCTTAATTATTTTTTTAATATT-TATACAATGA-
* *
15126096 AAAAAAATTATTATGAAAATTTTTATAATATTTGTAACAATGAAGAGTTTTTGTTGCAAAAT
64 AAAAAAATTATTATGAAAATTTTTATAATATTTGTAACAAT-AAAAATTTTTGTTGCAAAAT
15126158 GATATAACAT
Statistics
Matches: 206, Mismatches: 42, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
127 2 0.01
128 53 0.26
129 18 0.09
130 13 0.06
131 108 0.52
132 12 0.06
ACGTcount: A:0.37, C:0.06, G:0.09, T:0.48
Consensus pattern (127 bp):
ATTTTATTTGTAATGATTTTTTAATGTCATTGCTTAATTATTTTTTTAATATTTATACAATGAAA
AAAAATTATTATGAAAATTTTTATAATATTTGTAACAATAAAAATTTTTGTTGCAAAATCTC
Found at i:15128855 original size:60 final size:61
Alignment explanation
Indices: 15128761--15128888 Score: 222
Period size: 60 Copynumber: 2.1 Consensus size: 61
15128751 TTTTTTTTGG
*
15128761 CATTCTCATGCATGGAGCATGTAAATATTAAATTAAAGAAATGTTATAACTTTCTTGGAGA
1 CATTCTCATGCATGGAGCATGCAAATATTAAATTAAAGAAATGTTATAACTTTCTTGGAGA
* *
15128822 CATTCTCATG-TTTGAGCATGCAAATATTAAATTAAAGAAATGTTATAACTTTCTTGGAGA
1 CATTCTCATGCATGGAGCATGCAAATATTAAATTAAAGAAATGTTATAACTTTCTTGGAGA
15128882 CATTCTC
1 CATTCTC
15128889 TAATTTTTTA
Statistics
Matches: 64, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
60 54 0.84
61 10 0.16
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (61 bp):
CATTCTCATGCATGGAGCATGCAAATATTAAATTAAAGAAATGTTATAACTTTCTTGGAGA
Found at i:15130170 original size:20 final size:20
Alignment explanation
Indices: 15130145--15130187 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
15130135 TCAAGGTGAA
15130145 TGTTTTGCATATTTTGTTTT
1 TGTTTTGCATATTTTGTTTT
15130165 TGTTTTGCATATTTTGTTTT
1 TGTTTTGCATATTTTGTTTT
15130185 TGT
1 TGT
15130188 ATGGTACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.09, C:0.05, G:0.16, T:0.70
Consensus pattern (20 bp):
TGTTTTGCATATTTTGTTTT
Found at i:15140250 original size:22 final size:22
Alignment explanation
Indices: 15140197--15140239 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
15140187 TTAGCTTTGA
*
15140197 TTCTTTTTATTTCCAACTTTAG
1 TTCTTTTCATTTCCAACTTTAG
15140219 TTCTTTTCATTTCCAACTTTA
1 TTCTTTTCATTTCCAACTTTA
15140240 TTTTGCTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.19, C:0.21, G:0.02, T:0.58
Consensus pattern (22 bp):
TTCTTTTCATTTCCAACTTTAG
Found at i:15140630 original size:20 final size:20
Alignment explanation
Indices: 15140593--15140632 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
15140583 TTATTCATTT
* **
15140593 TCAAAAAATAAATTAAAAAA
1 TCAAAAAAAAAAAAAAAAAA
15140613 TCAAAAAAAAAAAAAAAAAA
1 TCAAAAAAAAAAAAAAAAAA
15140633 AAAATTTAGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.82, C:0.05, G:0.00, T:0.12
Consensus pattern (20 bp):
TCAAAAAAAAAAAAAAAAAA
Found at i:15143227 original size:17 final size:16
Alignment explanation
Indices: 15143207--15143258 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 16
15143197 GGTGGAGCTT
15143207 GAAAAAAGAATGAAAAA
1 GAAAAAAGAA-GAAAAA
15143224 GAAAATAGAGAA-AAAAA
1 GAAAA-A-AGAAGAAAAA
15143241 GAAGAAAAAGAAGAAAAA
1 G-A-AAAAAGAAGAAAAA
15143259 AAAGTTGTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
17 15 0.50
18 8 0.27
19 7 0.23
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.04
Consensus pattern (16 bp):
GAAAAAAGAAGAAAAA
Found at i:15143247 original size:20 final size:20
Alignment explanation
Indices: 15143222--15143260 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
15143212 AAGAATGAAA
15143222 AAGAAAATAG-AGAAAAAAAG
1 AAGAAAA-AGAAGAAAAAAAG
15143242 AAGAAAAAGAAGAAAAAAA
1 AAGAAAAAGAAGAAAAAAA
15143261 AGTTGTGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (20 bp):
AAGAAAAAGAAGAAAAAAAG
Found at i:15143248 original size:9 final size:9
Alignment explanation
Indices: 15143209--15143258 Score: 59
Period size: 9 Copynumber: 5.6 Consensus size: 9
15143199 TGGAGCTTGA
15143209 AAAAAGAATG
1 AAAAAGAA-G
15143219 AAAAAGAA-
1 AAAAAGAAG
*
15143227 AATAGAGAA-
1 AA-AAAGAAG
15143236 AAAAAGAAG
1 AAAAAGAAG
15143245 AAAAAGAAG
1 AAAAAGAAG
15143254 AAAAA
1 AAAAA
15143259 AAAGTTGTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
8 7 0.19
9 21 0.58
10 8 0.22
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (9 bp):
AAAAAGAAG
Found at i:15143353 original size:57 final size:58
Alignment explanation
Indices: 15143259--15143368 Score: 131
Period size: 57 Copynumber: 1.9 Consensus size: 58
15143249 AGAAGAAAAA
* *
15143259 AAAGTTGTGAAAAAGAATAAAATCACAAAAAATAGAAAAGAAAAA-GG-CAAAAGTAAT
1 AAAGTGGTGAAAAAGAATAAAATCAAAAAAAATAG-AAAGAAAAATGGACAAAAGTAAT
15143316 AAAGTGGTGAAAAAGCCAA-AAAA-CAAAAATAAA-AGAAAGAAAAATGGACAAAA
1 AAAGTGGTGAAAAAG--AATAAAATCAAAAA-AAATAGAAAGAAAAATGGACAAAA
15143369 TCAAAGTTTG
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
56 9 0.20
57 23 0.50
58 12 0.26
59 2 0.04
ACGTcount: A:0.66, C:0.06, G:0.16, T:0.11
Consensus pattern (58 bp):
AAAGTGGTGAAAAAGAATAAAATCAAAAAAAATAGAAAGAAAAATGGACAAAAGTAAT
Found at i:15144779 original size:119 final size:118
Alignment explanation
Indices: 15144544--15144781 Score: 370
Period size: 118 Copynumber: 2.0 Consensus size: 118
15144534 AGGGAATAAC
* * *
15144544 TAGATTTTTTTCTAGAACCTAAGGTCTTTTTCCTTTGCCAATAAATAGAGGAGGGTTGACCTTAG
1 TAGATTTATTTCTAGAACCTAAAGTCTTTTTCCTTTGCCAATAAATAGAGGAGGGCTGACCTTAG
*
15144609 TGAGGAGATTTTTTTTTTTTAGAAAAGTTTAGGACTTTAGTTTTGAATTTTTTT
66 TGA-GAGAATTTTTTTTTTTAGAAAAGTTTAGGACTTTAGTTTTGAATTTTTTT
* * * *
15144663 TAGATTTATTTCTAGCACCTAAAGTCTTTTTCTTTTGCCTATAAATAGAGGGGGGGCTGACCTTA
1 TAGATTTATTTCTAGAACCTAAAGTCTTTTTCCTTTGCCAATAAATAGA-GGAGGGCTGACCTTA
*
15144728 GTGA-AGAATTTTTTTTTTTAGAGAAGTTTAGGACTTTAGTTTTGAATTTTTTT
65 GTGAGAGAATTTTTTTTTTTAGAAAAGTTTAGGACTTTAGTTTTGAATTTTTTT
15144781 T
1 T
15144782 CTCTCTGCAT
Statistics
Matches: 109, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
118 48 0.44
119 44 0.40
120 17 0.16
ACGTcount: A:0.25, C:0.10, G:0.19, T:0.46
Consensus pattern (118 bp):
TAGATTTATTTCTAGAACCTAAAGTCTTTTTCCTTTGCCAATAAATAGAGGAGGGCTGACCTTAG
TGAGAGAATTTTTTTTTTTAGAAAAGTTTAGGACTTTAGTTTTGAATTTTTTT
Found at i:15146463 original size:50 final size:48
Alignment explanation
Indices: 15146404--15146498 Score: 120
Period size: 50 Copynumber: 1.9 Consensus size: 48
15146394 ACTTTGTTAA
*
15146404 TTTTGTATTTGCATTTTATTTTTC-TTAGTAGTAATTCATTTTTTTATAAT
1 TTTTGTATTTG-ATTTT-TTTATCATTAGTAGTAATT-ATTTTTTTATAAT
* *
15146454 TTTTTTATTTGATTTTTTTATCATTTTGTAGTAATTATTTTTTTA
1 TTTTGTATTTGATTTTTTTATCA-TTAGTAGTAATTATTTTTTTA
15146499 ATTGGTTGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
48 5 0.12
49 14 0.35
50 21 0.52
ACGTcount: A:0.21, C:0.04, G:0.07, T:0.67
Consensus pattern (48 bp):
TTTTGTATTTGATTTTTTTATCATTAGTAGTAATTATTTTTTTATAAT
Found at i:15147356 original size:78 final size:81
Alignment explanation
Indices: 15147258--15147568 Score: 319
Period size: 72 Copynumber: 4.0 Consensus size: 81
15147248 AAAAATTATC
* * * * *
15147258 TCGATAATGATATTCGAGTTTTTTCAAAG-TA-TTAGATGGTAATATCCGAGTATT-AAAAATGA
1 TCGATGATGATATCCAAGTTTTTTCAAAGTTACTTAGATGGTGATATCTGAGTATTCAAAAATGA
15147320 ATTTTATTAAATTTTT
66 ATTTTATTAAATTTTT
* * * *
15147336 TCGATGATGATATCCAAG-TTTTTCAAAGCTACTCA-ATGGTGATATCTAAGTATTCAAAAATAA
1 TCGATGATGATATCCAAGTTTTTTCAAAGTTACTTAGATGGTGATATCTGAGTATTCAAAAATGA
*
15147399 ATTTTATAAAATTTTT
66 ATTTTATTAAATTTTT
* * * * * *
15147415 TTGATGGTGATATCCAAGCTTTTTCAAAGTTA-TTCGGTGGTGATATATGAGTATTCAAAAATGA
1 TCGATGATGATATCCAAGTTTTTTCAAAGTTACTTAGATGGTGATATCTGAGTATTCAAAAATGA
*
15147479 ATTTTACTAAA----T
66 ATTTTATTAAATTTTT
* * *
15147491 T-G--G-TGATATCTAAGTTTTTTCAAAGTTACTT-GGTGGTGATATCTGAGTATTCTAAAATGA
1 TCGATGATGATATCCAAGTTTTTTCAAAGTTACTTAGATGGTGATATCTGAGTATTCAAAAATGA
* *
15147551 TTTTTATTGAATTTTT
66 ATTTTATTAAATTTTT
15147567 TC
1 TC
15147569 AATAGAAGCT
Statistics
Matches: 195, Mismatches: 27, Indels: 23
0.80 0.11 0.09
Matches are distributed among these distances:
72 58 0.30
73 3 0.02
75 1 0.01
76 4 0.02
77 10 0.05
78 33 0.17
79 41 0.21
80 45 0.23
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.43
Consensus pattern (81 bp):
TCGATGATGATATCCAAGTTTTTTCAAAGTTACTTAGATGGTGATATCTGAGTATTCAAAAATGA
ATTTTATTAAATTTTT
Found at i:15147426 original size:79 final size:80
Alignment explanation
Indices: 15147306--15147489 Score: 255
Period size: 80 Copynumber: 2.3 Consensus size: 80
15147296 GTAATATCCG
*
15147306 AGTATT-AAAAATGAATTTTATTAAATTTTTTCGATGATGATATCCAAG-TTTTTCAAAGCTACT
1 AGTATTCAAAAATGAATTTTATAAAATTTTTTCGATGATGATATCCAAGCTTTTTCAAAGCTACT
*
15147369 CAATGGTGATATCTA
66 CAATGGTGATATATA
* * * * *
15147384 AGTATTCAAAAATAAATTTTATAAAATTTTTTTGATGGTGATATCCAAGCTTTTTCAAAGTTATT
1 AGTATTCAAAAATGAATTTTATAAAATTTTTTCGATGATGATATCCAAGCTTTTTCAAAGCTACT
** *
15147449 CGGTGGTGATATATG
66 CAATGGTGATATATA
15147464 AGTATTCAAAAATGAATTTTACTAAA
1 AGTATTCAAAAATGAATTTTA-TAAA
15147490 TTGGTGATAT
Statistics
Matches: 92, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
78 6 0.07
79 38 0.41
80 44 0.48
81 4 0.04
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.41
Consensus pattern (80 bp):
AGTATTCAAAAATGAATTTTATAAAATTTTTTCGATGATGATATCCAAGCTTTTTCAAAGCTACT
CAATGGTGATATATA
Found at i:15147582 original size:72 final size:72
Alignment explanation
Indices: 15147430--15147612 Score: 190
Period size: 72 Copynumber: 2.5 Consensus size: 72
15147420 GGTGATATCC
*
15147430 AAGCTTTTTCAAAGTTA-TTCGGTGGTGATATATGAGTATTCAAAAATGAATTTTACTAAATTGG
1 AAGCTTTTTCAAAGTTACTT-GGTGGTGATATCTGAGTATTCAAAAATGAATTTTACTAAATTGG
* **
15147494 TGATATCT
65 TCATATAG
* * * * * **
15147502 AAGTTTTTTCAAAGTTACTTGGTGGTGATATCTGAGTATTCTAAAATGATTTTTATTGAATTTTT
1 AAGCTTTTTCAAAGTTACTTGGTGGTGATATCTGAGTATTCAAAAATGAATTTTACT-AAATTGG
15147567 TCA-ATAG
65 TCATATAG
* * * * *
15147574 AAGCTTTTTCAAAATCACTCGGTAGTGATATCCGAGTAT
1 AAGCTTTTTCAAAGTTACTTGGTGGTGATATCTGAGTAT
15147613 CATTATTTGA
Statistics
Matches: 92, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
72 84 0.91
73 8 0.09
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42
Consensus pattern (72 bp):
AAGCTTTTTCAAAGTTACTTGGTGGTGATATCTGAGTATTCAAAAATGAATTTTACTAAATTGGT
CATATAG
Found at i:15147805 original size:23 final size:22
Alignment explanation
Indices: 15147771--15147816 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
15147761 AGTCATTTGC
15147771 ATTTTTTTGTGGGGATATACAA
1 ATTTTTTTGTGGGGATATACAA
* *
15147793 ATTTTTTTAGTGGTGATATCCAA
1 ATTTTTTT-GTGGGGATATACAA
15147816 A
1 A
15147817 GTTACTTACG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.46
Consensus pattern (22 bp):
ATTTTTTTGTGGGGATATACAA
Found at i:15149427 original size:31 final size:32
Alignment explanation
Indices: 15149392--15149451 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
15149382 ATTTGAATAT
*
15149392 GATAT-AAAATTTTTATTTAATTTCTTAAGCC
1 GATATAAAAATTTTTAGTTAATTTCTTAAGCC
*
15149423 GATATAAAAATTTTTAGTTAATTTTTTAA
1 GATATAAAAATTTTTAGTTAATTTCTTAA
15149452 AATTATATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 5 0.19
32 21 0.81
ACGTcount: A:0.38, C:0.05, G:0.07, T:0.50
Consensus pattern (32 bp):
GATATAAAAATTTTTAGTTAATTTCTTAAGCC
Found at i:15149775 original size:28 final size:28
Alignment explanation
Indices: 15149722--15149775 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
15149712 TTATGGATAG
* **
15149722 AAAATAATATTTTTTATGATTTATAAGT
1 AAAATAATATTTTTAATGATAAATAAGT
15149750 AAAATAATATTTTTAATAGA-AAATAA
1 AAAATAATATTTTTAAT-GATAAATAA
15149776 TTTTTTGTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 20 0.91
29 2 0.09
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.43
Consensus pattern (28 bp):
AAAATAATATTTTTAATGATAAATAAGT
Found at i:15151736 original size:12 final size:12
Alignment explanation
Indices: 15151719--15151802 Score: 55
Period size: 12 Copynumber: 6.8 Consensus size: 12
15151709 ATTAAACTGT
15151719 AAACCCTAAATC
1 AAACCCTAAATC
15151731 AAACCCTAAA-C
1 AAACCCTAAATC
*
15151742 TAAACCCT-AAGC
1 -AAACCCTAAATC
** *
15151754 TAAATACTAAACTTT
1 -AAACCCTAAA--TC
15151769 AAACCCTAAATC
1 AAACCCTAAATC
* * *
15151781 AAGCCTTAAATT
1 AAACCCTAAATC
15151793 AAACCCTAAA
1 AAACCCTAAA
15151803 CCTTAAAACA
Statistics
Matches: 55, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
11 3 0.05
12 42 0.76
13 2 0.04
14 8 0.15
ACGTcount: A:0.49, C:0.27, G:0.02, T:0.21
Consensus pattern (12 bp):
AAACCCTAAATC
Found at i:15151745 original size:24 final size:24
Alignment explanation
Indices: 15151718--15151802 Score: 82
Period size: 24 Copynumber: 3.5 Consensus size: 24
15151708 TATTAAACTG
15151718 TAAACCCTAAATCAAACCCTAAAC
1 TAAACCCTAAATCAAACCCTAAAC
* **
15151742 TAAACCCT-AAGCTAAATACTAAAC
1 TAAACCCTAAATC-AAACCCTAAAC
* * *
15151766 TTTAAACCCTAAATCAAGCCTTAAAT
1 --TAAACCCTAAATCAAACCCTAAAC
15151792 TAAACCCTAAA
1 TAAACCCTAAA
15151803 CCTTAAAACA
Statistics
Matches: 48, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
23 3 0.06
24 28 0.58
26 14 0.29
27 3 0.06
ACGTcount: A:0.48, C:0.27, G:0.02, T:0.22
Consensus pattern (24 bp):
TAAACCCTAAATCAAACCCTAAAC
Found at i:15154229 original size:14 final size:15
Alignment explanation
Indices: 15154201--15154229 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15154191 ACTTCTGAGA
15154201 TCATTATCTCTTTTT
1 TCATTATCTCTTTTT
15154216 TCATTATC-CTTTTT
1 TCATTATCTCTTTTT
15154230 ATCCTAGACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.14, C:0.21, G:0.00, T:0.66
Consensus pattern (15 bp):
TCATTATCTCTTTTT
Found at i:15155875 original size:28 final size:29
Alignment explanation
Indices: 15155839--15155899 Score: 97
Period size: 28 Copynumber: 2.1 Consensus size: 29
15155829 TAATTTAGCA
*
15155839 TATTAAACTCAATTAGAATATTCAATTAG
1 TATTAAACTCAATCAGAATATTCAATTAG
*
15155868 TATT-AACTTAATCAGAATATTCAATTAG
1 TATTAAACTCAATCAGAATATTCAATTAG
15155896 TATT
1 TATT
15155900 CATATGAACT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 26 0.87
29 4 0.13
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.41
Consensus pattern (29 bp):
TATTAAACTCAATCAGAATATTCAATTAG
Found at i:15158759 original size:75 final size:74
Alignment explanation
Indices: 15158662--15158811 Score: 237
Period size: 75 Copynumber: 2.0 Consensus size: 74
15158652 AAACTTCACT
*
15158662 TATTCATCTACTTGTCTTACATCTAAGCTTTGTAAGTTACTCTGGAGACATACACACCATCTTCC
1 TATTCATCTACTTGTCTTACATCTAAGCTTTGTAAGTTACTCTGGAGACATAAACACCATCTTCC
* *
15158727 CTTGTTTGA
66 CCTATTTGA
* * *
15158736 TATTCATCTGCTTTGTCTTACATCTAAGCTTTGTAAGTTAGTTTGGAGACATAAACACCATCTTC
1 TATTCATCTAC-TTGTCTTACATCTAAGCTTTGTAAGTTACTCTGGAGACATAAACACCATCTTC
15158801 CCCTATTTGA
65 CCCTATTTGA
15158811 T
1 T
15158812 TTTTAGAGCT
Statistics
Matches: 69, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
74 10 0.14
75 59 0.86
ACGTcount: A:0.25, C:0.23, G:0.13, T:0.40
Consensus pattern (74 bp):
TATTCATCTACTTGTCTTACATCTAAGCTTTGTAAGTTACTCTGGAGACATAAACACCATCTTCC
CCTATTTGA
Found at i:15160310 original size:19 final size:20
Alignment explanation
Indices: 15160278--15160315 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
15160268 TTCTTGTATA
* *
15160278 TATTCGTGTTTAT-CATGTC
1 TATTCGTATATATCCATGTC
15160297 TATTCGTATATATCCATGT
1 TATTCGTATATATCCATGT
15160316 TAGTCGTGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (20 bp):
TATTCGTATATATCCATGTC
Found at i:15160346 original size:29 final size:28
Alignment explanation
Indices: 15160271--15160363 Score: 87
Period size: 29 Copynumber: 3.2 Consensus size: 28
15160261 AGTTGTGTTC
*
15160271 TTGTATATATTCGTGTTTATCATGTCTAT
1 TTGTATATATTCATG-TTATCATGTCTAT
* * *
15160300 TCGTATATATCCATGTTAGTCGTGTCTAT
1 TTGTATATATTCATGTTA-TCATGTCTAT
* * * *
15160329 TTGTGTATATTCTTGTTATTTATGTTTAT
1 TTGTATATATTCATGTTA-TCATGTCTAT
15160358 TTGTAT
1 TTGTAT
15160364 CGTATTTAAA
Statistics
Matches: 50, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
28 3 0.06
29 47 0.94
ACGTcount: A:0.19, C:0.10, G:0.15, T:0.56
Consensus pattern (28 bp):
TTGTATATATTCATGTTATCATGTCTAT
Found at i:15163790 original size:13 final size:14
Alignment explanation
Indices: 15163774--15163802 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
15163764 ATTTGTTTTC
15163774 TTTATTTTT-TTAA
1 TTTATTTTTCTTAA
15163787 TTTATTTTTCTTAA
1 TTTATTTTTCTTAA
15163801 TT
1 TT
15163803 ACTTCACTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTATTTTTCTTAA
Found at i:15166950 original size:17 final size:16
Alignment explanation
Indices: 15166905--15166952 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
15166895 AAAAGCAAGG
15166905 AAAGGAGAAAAATAGA
1 AAAGGAGAAAAATAGA
*
15166921 AAAGAAAGAAAAA-AGA
1 AAAG-GAGAAAAATAGA
15166937 AAAGGATGACAAAATA
1 AAAGGA-GA-AAAATA
15166953 TATGTTCTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
15 1 0.04
16 13 0.50
17 11 0.42
18 1 0.04
ACGTcount: A:0.71, C:0.02, G:0.21, T:0.06
Consensus pattern (16 bp):
AAAGGAGAAAAATAGA
Found at i:15167489 original size:2 final size:2
Alignment explanation
Indices: 15167482--15167533 Score: 59
Period size: 2 Copynumber: 26.0 Consensus size: 2
15167472 ACAGGGAGGA
* * * * *
15167482 AT AT AT AT AT AT AT AT AT AT AT GT AT GT AT GT AT TT AT GT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15167524 AT AT AT AT AT
1 AT AT AT AT AT
15167534 TTATGAGAGG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (2 bp):
AT
Found at i:15177435 original size:30 final size:30
Alignment explanation
Indices: 15177399--15177456 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
15177389 AGCTAGGAAG
*
15177399 TACTTAATTCTAGGGA-TATAGATTACAACA
1 TACTTAATTCTA-GGATTACAGATTACAACA
*
15177429 TACTTAATTTTAGGATTACAGATTACAA
1 TACTTAATTCTAGGATTACAGATTACAA
15177457 TTAGCTGTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (30 bp):
TACTTAATTCTAGGATTACAGATTACAACA
Found at i:15179340 original size:27 final size:28
Alignment explanation
Indices: 15179270--15179342 Score: 69
Period size: 31 Copynumber: 2.5 Consensus size: 28
15179260 ATTGTATTTG
* *
15179270 TAAAAATATATAGATATTACTAATAATA
1 TAAAATTATATATATATTACTAATAATA
*
15179298 TAAAATTTAAAAATATATATTA-TAATTAA-A
1 TAAAA-TT--ATATATATATTACTAA-TAATA
15179328 TAAAATTATATATAT
1 TAAAATTATATATAT
15179343 TTTTAGTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
27 7 0.19
28 5 0.14
29 3 0.08
30 9 0.24
31 13 0.35
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.40
Consensus pattern (28 bp):
TAAAATTATATATATATTACTAATAATA
Found at i:15181652 original size:31 final size:31
Alignment explanation
Indices: 15181617--15181724 Score: 130
Period size: 31 Copynumber: 3.5 Consensus size: 31
15181607 TTTTATGGAT
*
15181617 GAGTTTTGATTGGACTGAGACTCTTTGGGTA
1 GAGTTTTGATTGGATTGAGACTCTTTGGGTA
* **
15181648 GAGTTTT-AGTTGGATTAAGACTCTTTAAGTA
1 GAGTTTTGA-TTGGATTGAGACTCTTTGGGTA
* *
15181679 GAGTTTTGATTGGATTGAAACTTTTTGGGTA
1 GAGTTTTGATTGGATTGAGACTCTTTGGGTA
15181710 GAGTTTTTG-TTGGAT
1 GAG-TTTTGATTGGAT
15181725 AAGTATTTCT
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
30 1 0.02
31 58 0.89
32 6 0.09
ACGTcount: A:0.22, C:0.06, G:0.29, T:0.44
Consensus pattern (31 bp):
GAGTTTTGATTGGATTGAGACTCTTTGGGTA
Found at i:15181652 original size:62 final size:62
Alignment explanation
Indices: 15181585--15181727 Score: 173
Period size: 62 Copynumber: 2.3 Consensus size: 62
15181575 CTTTATAGGA
* * * * *
15181585 AGAGTTTTGGTTGGACTAGGA-TTTTTATGGATGAGTTTTGATTGGACTGAGACTCTTTGGGT
1 AGAGTTTTAGTTGGACTAAGACTCTTTAAGGA-GAGTTTTGATTGGACTGAAACTCTTTGGGT
* * * *
15181647 AGAGTTTTAGTTGGATTAAGACTCTTTAAGTAGAGTTTTGATTGGATTGAAACTTTTTGGGT
1 AGAGTTTTAGTTGGACTAAGACTCTTTAAGGAGAGTTTTGATTGGACTGAAACTCTTTGGGT
*
15181709 AGAGTTTTTGTTGGA-TAAG
1 AGAGTTTTAGTTGGACTAAG
15181728 TATTTCTTAG
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
61 4 0.06
62 59 0.84
63 7 0.10
ACGTcount: A:0.23, C:0.05, G:0.29, T:0.43
Consensus pattern (62 bp):
AGAGTTTTAGTTGGACTAAGACTCTTTAAGGAGAGTTTTGATTGGACTGAAACTCTTTGGGT
Found at i:15182657 original size:91 final size:91
Alignment explanation
Indices: 15182458--15182650 Score: 246
Period size: 91 Copynumber: 2.1 Consensus size: 91
15182448 GGTTAAGTTT
* *
15182458 GATTAGCCATTTGTGGTTATAATTTGATTTCGACTCTTGGGTTGCCAAGTAGAAGTAAAGATAAA
1 GATTAGCCATTTGTGGTTATAATTTGATTTCGACTCTTGGGTTGCCAAGAAGAAATAAAGATAAA
*
15182523 ACCTGAGTTTATCAAAAATCTAAATG
66 ACCTAAGTTTATCAAAAATCTAAATG
* * * * *
15182549 GGTTAGACATTTGTGGTTATAATTTGA-TTCGACTTTTGGGGTTGCCAAGAAGAAATGAGGA-AA
1 GATTAGCCATTTGTGGTTATAATTTGATTTCGACTCTT-GGGTTGCCAAGAAGAAATAAAGATAA
* * * *
15182612 AGATCTAAGTTTATCGAATATGTAAATG
65 A-ACCTAAGTTTATCAAAAATCTAAATG
15182640 GATTAGCCATT
1 GATTAGCCATT
15182651 CATGGTTGAA
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
90 12 0.14
91 74 0.86
ACGTcount: A:0.33, C:0.10, G:0.22, T:0.34
Consensus pattern (91 bp):
GATTAGCCATTTGTGGTTATAATTTGATTTCGACTCTTGGGTTGCCAAGAAGAAATAAAGATAAA
ACCTAAGTTTATCAAAAATCTAAATG
Found at i:15186069 original size:17 final size:17
Alignment explanation
Indices: 15186036--15186071 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
15186026 TGTAGGCTCG
* *
15186036 TTTATTTTTTTTTATTT
1 TTTATTTTTTGTAATTT
15186053 TTTATTTTTTGTAATTT
1 TTTATTTTTTGTAATTT
15186070 TT
1 TT
15186072 ATGTAGAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.14, C:0.00, G:0.03, T:0.83
Consensus pattern (17 bp):
TTTATTTTTTGTAATTT
Found at i:15189728 original size:71 final size:69
Alignment explanation
Indices: 15189589--15189730 Score: 166
Period size: 71 Copynumber: 2.0 Consensus size: 69
15189579 AAAAAGTGAA
* *
15189589 AAAAAGATGGAAAATCTAACTAAGAATGGGCAAATGATAAAAAGATTATTTTGGTGAAAAACTAG
1 AAAAAGATGAAAAATCTAACTAAGAATGGGCAAATGATAAAAAGATTATTTT-GAGAAAAACTAG
15189654 AAAAG
65 AAAAG
*
15189659 AAAAAGATGAAAATATCTAACTAAGAAT-GGCTAATTGAATGAATGAAAGATTATTTT-AGAAAA
1 AAAAAGATGAAAA-ATCTAACTAAGAATGGGC-AAATG-AT-AA--AAAGATTATTTTGAGAAAA
15189722 A-T-GAAAAG
60 ACTAGAAAAG
15189730 A
1 A
15189731 GAGAATAAAG
Statistics
Matches: 63, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
70 15 0.24
71 25 0.40
72 3 0.05
73 8 0.13
75 12 0.19
ACGTcount: A:0.54, C:0.05, G:0.18, T:0.23
Consensus pattern (69 bp):
AAAAAGATGAAAAATCTAACTAAGAATGGGCAAATGATAAAAAGATTATTTTGAGAAAAACTAGA
AAAG
Found at i:15191016 original size:26 final size:26
Alignment explanation
Indices: 15190982--15191035 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
15190972 GTTTTGGGGT
*
15190982 TTTTGACCTCTTGATAATAATAAGCC
1 TTTTGACCTCGTGATAATAATAAGCC
* *
15191008 TTTTGACCTCGTGATAGTAATGAGCC
1 TTTTGACCTCGTGATAATAATAAGCC
15191034 TT
1 TT
15191036 GGTATGCTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.39
Consensus pattern (26 bp):
TTTTGACCTCGTGATAATAATAAGCC
Found at i:15194092 original size:31 final size:29
Alignment explanation
Indices: 15194053--15194115 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 29
15194043 TTCAGTGTTC
15194053 TTTATGATTT-TAGCAATAAAACTTACAAAT
1 TTTATGATTTCTAGC--TAAAACTTACAAAT
* *
15194083 TTTATTGATTTCTAGCTCAAACTTACTAAT
1 TTTA-TGATTTCTAGCTAAAACTTACAAAT
15194113 TTT
1 TTT
15194116 TTGTTGATAC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 19 0.66
31 6 0.21
32 4 0.14
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.46
Consensus pattern (29 bp):
TTTATGATTTCTAGCTAAAACTTACAAAT
Found at i:15203929 original size:17 final size:17
Alignment explanation
Indices: 15203902--15203951 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
15203892 TAATTTAGGT
* *
15203902 ATAATAATTCATTATAT
1 ATAAGAATTCATTATAC
* * *
15203919 ATTAGAATTCATCATGC
1 ATAAGAATTCATTATAC
15203936 ATAAGAATTCATTATA
1 ATAAGAATTCATTATA
15203952 ATTTACATTC
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.44, C:0.10, G:0.06, T:0.40
Consensus pattern (17 bp):
ATAAGAATTCATTATAC
Found at i:15205645 original size:21 final size:21
Alignment explanation
Indices: 15205592--15205634 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
15205582 ACTTTGCAAG
15205592 ATGGCATGGAGGCCATGCGCC
1 ATGGCATGGAGGCCATGCGCC
*
15205613 ATGGCATGGAGGCCATGTGCC
1 ATGGCATGGAGGCCATGCGCC
15205634 A
1 A
15205635 GCGGATGGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.21, C:0.26, G:0.37, T:0.16
Consensus pattern (21 bp):
ATGGCATGGAGGCCATGCGCC
Found at i:15211846 original size:3 final size:3
Alignment explanation
Indices: 15211833--15211871 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
15211823 AGAGATTTCC
*
15211833 ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
15211872 TGATGTGAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:15214926 original size:35 final size:35
Alignment explanation
Indices: 15214887--15214971 Score: 100
Period size: 35 Copynumber: 2.4 Consensus size: 35
15214877 ACAAAATTGT
* ** *
15214887 AAGTCAAAAAATAAAGATGTTTGAG-ATGAAGTCGC
1 AAGTCAAAAAATAAAGATGCTT-AGTACAAAGTCAC
*
15214922 AAGTCAGAAAATAAAGATGCTTAGTACAAAGTCAC
1 AAGTCAAAAAATAAAGATGCTTAGTACAAAGTCAC
*
15214957 AAGTTAAAAAATAAA
1 AAGTCAAAAAATAAA
15214972 AATGATCAAG
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
34 2 0.05
35 40 0.95
ACGTcount: A:0.52, C:0.09, G:0.18, T:0.21
Consensus pattern (35 bp):
AAGTCAAAAAATAAAGATGCTTAGTACAAAGTCAC
Found at i:15215065 original size:35 final size:35
Alignment explanation
Indices: 15215026--15215105 Score: 115
Period size: 35 Copynumber: 2.3 Consensus size: 35
15215016 ATGAAGTCGT
* * *
15215026 AAGTCGAGAAATAAATACGACTATGACAAAACTGC
1 AAGTCAAGAAATAAATACGACCAAGACAAAACTGC
**
15215061 AAGTCAAGAAATAAATACGACCAAGACAAAGTTGC
1 AAGTCAAGAAATAAATACGACCAAGACAAAACTGC
15215096 AAGTCAAGAA
1 AAGTCAAGAA
15215106 TAAGGATGAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.51, C:0.16, G:0.17, T:0.15
Consensus pattern (35 bp):
AAGTCAAGAAATAAATACGACCAAGACAAAACTGC
Found at i:15215165 original size:34 final size:34
Alignment explanation
Indices: 15215118--15215208 Score: 112
Period size: 34 Copynumber: 2.6 Consensus size: 34
15215108 AGGATGATAG
* * *
15215118 GGATGAAGCCACAAGTTAAGAAATGAATACGATTT
1 GGATGAA-ACACAAGTTAAGAAATAAATACGACTT
*
15215153 GGATGAAACACAAGTTAGGAAATAAATACGACTT
1 GGATGAAACACAAGTTAAGAAATAAATACGACTT
15215187 GGATGAAAC-CGTAAGTTAAGAA
1 GGATGAAACAC--AAGTTAAGAA
15215209 CAAGGATAAC
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
33 1 0.02
34 32 0.65
35 16 0.33
ACGTcount: A:0.45, C:0.11, G:0.23, T:0.21
Consensus pattern (34 bp):
GGATGAAACACAAGTTAAGAAATAAATACGACTT
Found at i:15216331 original size:16 final size:16
Alignment explanation
Indices: 15216310--15216374 Score: 60
Period size: 16 Copynumber: 3.9 Consensus size: 16
15216300 TTCTTCTTCA
15216310 TTTTTTTTTTCTTTCT
1 TTTTTTTTTTCTTTCT
15216326 TTTTTTTTTT-TGTTCCTT
1 TTTTTTTTTTCT-TT-C-T
* *
15216344 TTTTTTTATTTGTTTGT
1 TTTTTTT-TTTCTTTCT
*
15216361 TTTTTCTTTTCTTT
1 TTTTTTTTTTCTTT
15216375 GTCTCTTTCT
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
15 1 0.02
16 18 0.44
17 8 0.20
18 8 0.20
19 5 0.12
20 1 0.02
ACGTcount: A:0.02, C:0.09, G:0.05, T:0.85
Consensus pattern (16 bp):
TTTTTTTTTTCTTTCT
Found at i:15216363 original size:18 final size:17
Alignment explanation
Indices: 15216310--15216370 Score: 77
Period size: 17 Copynumber: 3.5 Consensus size: 17
15216300 TTCTTCTTCA
*
15216310 TTTTTTTTTTCTTTCTT
1 TTTTTTTTTTGTTTCTT
*
15216327 TTTTTTTTTTGTTCCTT
1 TTTTTTTTTTGTTTCTT
*
15216344 TTTTTTTATTTGTTTGTT
1 TTTTTTT-TTTGTTTCTT
15216362 TTTTCTTTT
1 TTTT-TTTT
15216371 CTTTGTCTCT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
17 22 0.58
18 13 0.34
19 3 0.08
ACGTcount: A:0.02, C:0.08, G:0.05, T:0.85
Consensus pattern (17 bp):
TTTTTTTTTTGTTTCTT
Found at i:15216376 original size:16 final size:15
Alignment explanation
Indices: 15216311--15216374 Score: 60
Period size: 15 Copynumber: 4.2 Consensus size: 15
15216301 TCTTCTTCAT
15216311 TTTTTTTTTC-TTTC
1 TTTTTTTTTCTTTTC
*
15216325 TTTTTTTTTTTTGTTCC
1 TTTTTTTTTCTT-TT-C
*
15216342 TTTTTTTTTATTTGT-
1 TTTTTTTTTCTTT-TC
*
15216357 TTGTTTTTTCTTTTC
1 TTTTTTTTTCTTTTC
15216372 TTT
1 TTT
15216375 GTCTCTTTCT
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
14 10 0.25
15 14 0.35
16 3 0.08
17 13 0.32
ACGTcount: A:0.02, C:0.09, G:0.05, T:0.84
Consensus pattern (15 bp):
TTTTTTTTTCTTTTC
Found at i:15227022 original size:3 final size:3
Alignment explanation
Indices: 15227016--15227054 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
15227006 ATTATTATTA
* *
15227016 TTG TTG TTG TTA TTG TTG TTG TTG TTG TTG TTA TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
15227055 CTATTAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.05, C:0.00, G:0.28, T:0.67
Consensus pattern (3 bp):
TTG
Done.