Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 84 of 117
Found at i:15231441 original size:28 final size:29
Alignment explanation
Indices: 15231401--15231458 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 29
15231391 GAAAAGTAAG
15231401 AATGCATAGGTGGTATGAAATAG-ATGAT
1 AATGCATAGGTGGTATGAAATAGAATGAT
* * *
15231429 AATGTATATGTGGTGTGAAATAGAATGAT
1 AATGCATAGGTGGTATGAAATAGAATGAT
15231458 A
1 A
15231459 GTACTTAGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 20 0.77
29 6 0.23
ACGTcount: A:0.40, C:0.02, G:0.28, T:0.31
Consensus pattern (29 bp):
AATGCATAGGTGGTATGAAATAGAATGAT
Found at i:15231718 original size:18 final size:18
Alignment explanation
Indices: 15231695--15231730 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
15231685 GCAATGCAAC
15231695 TTTCACCCTTAGAAGCTT
1 TTTCACCCTTAGAAGCTT
15231713 TTTCACCCTTAGAAGCTT
1 TTTCACCCTTAGAAGCTT
15231731 GTATCGTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.28, G:0.11, T:0.39
Consensus pattern (18 bp):
TTTCACCCTTAGAAGCTT
Found at i:15232007 original size:12 final size:12
Alignment explanation
Indices: 15231990--15232015 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
15231980 TTTACGTGTC
15231990 ATGCATACATTT
1 ATGCATACATTT
15232002 ATGCATACATTT
1 ATGCATACATTT
15232014 AT
1 AT
15232016 AAATATACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.42
Consensus pattern (12 bp):
ATGCATACATTT
Found at i:15236334 original size:2 final size:2
Alignment explanation
Indices: 15236329--15236365 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
15236319 GTGTGTGTGT
15236329 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
15236366 CTGCCAGATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:15240937 original size:2 final size:2
Alignment explanation
Indices: 15240930--15240959 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
15240920 TTTTTCTTCA
15240930 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15240960 GTCTTGCTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15242133 original size:2 final size:2
Alignment explanation
Indices: 15242126--15242153 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
15242116 GCATTCATAC
15242126 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15242154 TATCAAAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15246123 original size:2 final size:2
Alignment explanation
Indices: 15246116--15246146 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
15246106 TTAGATTTAG
15246116 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15246147 AGGGTGTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15246779 original size:10 final size:10
Alignment explanation
Indices: 15246764--15246797 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
15246754 AATCAATGCA
15246764 AAGGCAGGGC
1 AAGGCAGGGC
*
15246774 AAGGCAGCGC
1 AAGGCAGGGC
*
15246784 AGGGCAGGGC
1 AAGGCAGGGC
15246794 AAGG
1 AAGG
15246798 TCTAAACTCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.29, C:0.21, G:0.50, T:0.00
Consensus pattern (10 bp):
AAGGCAGGGC
Found at i:15247184 original size:15 final size:18
Alignment explanation
Indices: 15247154--15247194 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
15247144 TGTTTCGTTC
15247154 TTTGCTTTTTTCTTAT-T
1 TTTGCTTTTTTCTTATCT
15247171 TTTG-TTTTTT-TTATCT
1 TTTGCTTTTTTCTTATCT
*
15247187 TTTCCTTT
1 TTTGCTTT
15247195 AAAAAATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 4 0.19
16 10 0.48
17 7 0.33
ACGTcount: A:0.05, C:0.12, G:0.05, T:0.78
Consensus pattern (18 bp):
TTTGCTTTTTTCTTATCT
Found at i:15249362 original size:25 final size:25
Alignment explanation
Indices: 15249334--15249387 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
15249324 AAATTACTTT
*
15249334 AATATTCTCTAACCATAATTACAAA
1 AATATTATCTAACCATAATTACAAA
* * *
15249359 AATATTATCTTACTATAATTACGAA
1 AATATTATCTAACCATAATTACAAA
15249384 AATA
1 AATA
15249388 CATCTCATAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.35
Consensus pattern (25 bp):
AATATTATCTAACCATAATTACAAA
Found at i:15249398 original size:26 final size:25
Alignment explanation
Indices: 15249348--15249405 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
15249338 TTCTCTAACC
*
15249348 ATAATTACAAAAATATTATCTTACT
1 ATAATTACAAAAATATCATCTTACT
*
15249373 ATAATTACGAAAATA-CATCTCATACT
1 ATAATTACAAAAATATCATCT--TACT
15249399 ATAATTA
1 ATAATTA
15249406 GCTTAAATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 4 0.14
25 14 0.48
26 11 0.38
ACGTcount: A:0.48, C:0.14, G:0.02, T:0.36
Consensus pattern (25 bp):
ATAATTACAAAAATATCATCTTACT
Found at i:15250915 original size:8 final size:8
Alignment explanation
Indices: 15250902--15250942 Score: 55
Period size: 8 Copynumber: 5.0 Consensus size: 8
15250892 ACATGCGATC
15250902 TTATTTTT
1 TTATTTTT
15250910 TTATTTTT
1 TTATTTTT
15250918 TTCATTTTT
1 TT-ATTTTT
* *
15250927 TCAATTTT
1 TTATTTTT
15250935 TTATTTTT
1 TTATTTTT
15250943 AAATTGGATA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
8 21 0.75
9 7 0.25
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.80
Consensus pattern (8 bp):
TTATTTTT
Found at i:15252494 original size:30 final size:28
Alignment explanation
Indices: 15252460--15252519 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
15252450 AACTCTTAAC
15252460 TTTTCACTTTATCT-CGTTCTTTTATATTTT
1 TTTTCACTTT-TCTGC-TTCTTTTA-ATTTT
* *
15252490 TTTTCTCTTTTCTGCTTTTTTTAATTTT
1 TTTTCACTTTTCTGCTTCTTTTAATTTT
15252518 TT
1 TT
15252520 GTTTTTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 7 0.26
29 10 0.37
30 10 0.37
ACGTcount: A:0.10, C:0.15, G:0.03, T:0.72
Consensus pattern (28 bp):
TTTTCACTTTTCTGCTTCTTTTAATTTT
Found at i:15252517 original size:17 final size:17
Alignment explanation
Indices: 15252487--15252533 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
15252477 TCTTTTATAT
* *
15252487 TTTTTTTCTCTTTTCTG
1 TTTTTTTATATTTTCTG
*
15252504 CTTTTTTTA-ATTTTTTG
1 -TTTTTTTATATTTTCTG
15252521 TTTTTTTATATTT
1 TTTTTTTATATTT
15252534 ATTTTTTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 8 0.32
17 10 0.40
18 7 0.28
ACGTcount: A:0.09, C:0.09, G:0.04, T:0.79
Consensus pattern (17 bp):
TTTTTTTATATTTTCTG
Found at i:15252540 original size:16 final size:17
Alignment explanation
Indices: 15252505--15252545 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
15252495 TCTTTTCTGC
*
15252505 TTTTTTTA-ATTTTTTG
1 TTTTTTTATATTTATTG
15252521 TTTTTTTATATTTATT-
1 TTTTTTTATATTTATTG
*
15252537 TTTTATTAT
1 TTTTTTTAT
15252546 GTAAATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.80
Consensus pattern (17 bp):
TTTTTTTATATTTATTG
Found at i:15259892 original size:31 final size:31
Alignment explanation
Indices: 15259857--15259917 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
15259847 GAAAGTTGAC
* *
15259857 AAAAAAAGAAC-GGGAAATGATCTATGATGT
1 AAAAAAAGAACAGGAAAACGATCTATGATGT
*
15259887 AAAAAAGGAACAGGAAAACGATCTATGATGT
1 AAAAAAAGAACAGGAAAACGATCTATGATGT
15259918 TAGCTTCAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 10 0.37
31 17 0.63
ACGTcount: A:0.51, C:0.08, G:0.23, T:0.18
Consensus pattern (31 bp):
AAAAAAAGAACAGGAAAACGATCTATGATGT
Found at i:15260156 original size:25 final size:25
Alignment explanation
Indices: 15260119--15260171 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
15260109 TTTCCTTTCC
* * *
15260119 TTTCTTTTCTTTTTTTTTTTCCTACT
1 TTTCATTTCTTTTCTTGTTTCCT-CT
15260145 TTTCATTT-TTTTCTTGTTTCCTCT
1 TTTCATTTCTTTTCTTGTTTCCTCT
15260169 TTT
1 TTT
15260172 GTCCTCTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 5 0.21
25 12 0.50
26 7 0.29
ACGTcount: A:0.04, C:0.19, G:0.02, T:0.75
Consensus pattern (25 bp):
TTTCATTTCTTTTCTTGTTTCCTCT
Found at i:15261999 original size:2 final size:2
Alignment explanation
Indices: 15261992--15262020 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
15261982 TTAAAATGCA
15261992 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15262021 CACACACACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15262649 original size:21 final size:21
Alignment explanation
Indices: 15262624--15262666 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
15262614 TTTTTGCCTT
15262624 ACTCAACTTCAATACCAATTG
1 ACTCAACTTCAATACCAATTG
15262645 ACTCAACTTCAATACCAATTG
1 ACTCAACTTCAATACCAATTG
15262666 A
1 A
15262667 TGCCATGACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.28, G:0.05, T:0.28
Consensus pattern (21 bp):
ACTCAACTTCAATACCAATTG
Found at i:15267163 original size:22 final size:23
Alignment explanation
Indices: 15267113--15267164 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 23
15267103 AAAAAGTATC
**
15267113 ATAAAAA-TAAAAAATAATTCTA
1 ATAAAAATTAAAAAATAATTAAA
*
15267135 A-AGAAATTAAAAAAT-ATTAAA
1 ATAAAAATTAAAAAATAATTAAA
15267156 ATAAAAATT
1 ATAAAAATT
15267165 CTTTCAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (23 bp):
ATAAAAATTAAAAAATAATTAAA
Found at i:15268131 original size:9 final size:9
Alignment explanation
Indices: 15268107--15268326 Score: 79
Period size: 10 Copynumber: 23.4 Consensus size: 9
15268097 GAATAAAAAG
*
15268107 AAAATGTTTT
1 AAAAT-TTTA
15268117 AAAATTTTA
1 AAAATTTTA
15268126 AAAA-TTTA
1 AAAATTTTA
*
15268134 AAATTTTTTTA
1 AAA--ATTTTA
*
15268145 GAAATTTTA
1 AAAATTTTA
* *
15268154 AAAGATATAA
1 AAA-ATTTTA
15268164 AAAATTTTGA
1 AAAATTTT-A
** *
15268174 AAAGGTCTA
1 AAAATTTTA
*
15268183 AAATTTTTTTA
1 AAA--ATTTTA
*
15268194 AAATTTTCTA
1 AAAATTT-TA
*
15268204 AAATTTTTA
1 AAAATTTTA
**
15268213 AAAAAATTA
1 AAAATTTTA
* *
15268222 AATAAATTCA
1 AA-AATTTTA
*
15268232 AAAA-TCTA
1 AAAATTTTA
*
15268240 AAACATTCTA
1 AAA-ATTTTA
*
15268250 AAAA-TTAA
1 AAAATTTTA
**
15268258 AAAATTAAAA
1 AAAATT-TTA
15268268 AAAATTTT-
1 AAAATTTTA
**
15268276 AATTTTTTA
1 AAAATTTTA
**
15268285 AAAATTAAAA
1 AAAATT-TTA
15268295 AAAATTTTA
1 AAAATTTTA
15268304 AAAATTTTA
1 AAAATTTTA
15268313 AAAATTTTTA
1 AAAA-TTTTA
15268323 AAAA
1 AAAA
15268327 ATTAAAAAAA
Statistics
Matches: 159, Mismatches: 35, Indels: 32
0.70 0.15 0.14
Matches are distributed among these distances:
8 24 0.15
9 58 0.36
10 65 0.41
11 12 0.08
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.40
Consensus pattern (9 bp):
AAAATTTTA
Found at i:15268195 original size:11 final size:11
Alignment explanation
Indices: 15268179--15268211 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
15268169 TTTGAAAAGG
15268179 TCTAAAATTTT
1 TCTAAAATTTT
*
15268190 TTTAAAA-TTT
1 TCTAAAATTTT
15268200 TCTAAAATTTT
1 TCTAAAATTTT
15268211 T
1 T
15268212 AAAAAAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (11 bp):
TCTAAAATTTT
Found at i:15268234 original size:17 final size:16
Alignment explanation
Indices: 15268214--15268268 Score: 67
Period size: 17 Copynumber: 3.3 Consensus size: 16
15268204 AAATTTTTAA
15268214 AAAAATTAAATAAATTC
1 AAAAATTAAA-AAATTC
*
15268231 AAAAATCTAAAACATTC
1 AAAAAT-TAAAAAATTC
15268248 TAAAAATTAAAAAATT-
1 -AAAAATTAAAAAATTC
15268264 AAAAA
1 AAAAA
15268269 AAATTTTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
15 5 0.15
17 19 0.56
18 10 0.29
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.25
Consensus pattern (16 bp):
AAAAATTAAAAAATTC
Found at i:15268261 original size:8 final size:8
Alignment explanation
Indices: 15268213--15268269 Score: 60
Period size: 8 Copynumber: 6.8 Consensus size: 8
15268203 AAAATTTTTA
15268213 AAAAAATT
1 AAAAAATT
15268221 AAATAAATT
1 AAA-AAATT
*
15268230 CAAAAATCT
1 AAAAAAT-T
*
15268239 AAAACATT
1 AAAAAATT
*
15268247 CTAAAAATT
1 -AAAAAATT
15268256 AAAAAATT
1 AAAAAATT
15268264 AAAAAA
1 AAAAAA
15268270 AATTTTAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
8 21 0.52
9 19 0.47
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.25
Consensus pattern (8 bp):
AAAAAATT
Found at i:15268269 original size:27 final size:27
Alignment explanation
Indices: 15268239--15268318 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
15268229 TCAAAAATCT
* * *
15268239 AAAACATTCTAAAAATTAAAAAATTAA
1 AAAAAATTTTAAAAATTTAAAAATTAA
***
15268266 AAAAAATTTTAATTTTTTAAAAATTAA
1 AAAAAATTTTAAAAATTTAAAAATTAA
15268293 AAAAAATTTTAAAAATTTTAAAAATT
1 AAAAAATTTTAAAAA-TTTAAAAATT
15268319 TTTAAAAAAT
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
27 33 0.77
28 10 0.23
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (27 bp):
AAAAAATTTTAAAAATTTAAAAATTAA
Found at i:15268302 original size:19 final size:19
Alignment explanation
Indices: 15268280--15268337 Score: 80
Period size: 19 Copynumber: 3.0 Consensus size: 19
15268270 AATTTTAATT
15268280 TTTTAAAAATTAAAAAAAA
1 TTTTAAAAATTAAAAAAAA
** *
15268299 TTTTAAAAATTTTAAAAAT
1 TTTTAAAAATTAAAAAAAA
15268318 TTTTAAAAAATTAAAAAAAA
1 TTTT-AAAAATTAAAAAAAA
15268338 ATATATATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 20 0.62
20 12 0.38
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
TTTTAAAAATTAAAAAAAA
Found at i:15268582 original size:10 final size:9
Alignment explanation
Indices: 15268567--15268682 Score: 90
Period size: 9 Copynumber: 11.9 Consensus size: 9
15268557 AAGTTTCCTT
15268567 AATTTTTAG
1 AATTTTTAG
15268576 AATTTTTAGAG
1 AATTTTT--AG
*
15268587 AAATTTTAG
1 AATTTTTAG
15268596 AGACTTTTTTAG
1 A-A--TTTTTAG
15268608 AATTTTTAG
1 AATTTTTAG
15268617 AAAATTTTTA-
1 --AATTTTTAG
15268627 AATTTTTAG
1 AATTTTTAG
* *
15268636 ATATTTTAAAA
1 A-ATTTT-TAG
*
15268647 AAGTTTTAG
1 AATTTTTAG
15268656 AATTTTTTAG
1 AA-TTTTTAG
15268666 AATTTTTAG
1 AATTTTTAG
*
15268675 AAATTTTA
1 AATTTTTA
15268683 TTTTAATACT
Statistics
Matches: 87, Mismatches: 9, Indels: 22
0.74 0.08 0.19
Matches are distributed among these distances:
8 8 0.09
9 35 0.40
10 18 0.21
11 19 0.22
12 7 0.08
ACGTcount: A:0.38, C:0.01, G:0.10, T:0.51
Consensus pattern (9 bp):
AATTTTTAG
Found at i:15268630 original size:19 final size:19
Alignment explanation
Indices: 15268567--15268681 Score: 99
Period size: 20 Copynumber: 5.8 Consensus size: 19
15268557 AAGTTTCCTT
15268567 AATTTTTAG-AATTTTTAGAG
1 AATTTTTAGAAATTTTT--AG
* *
15268587 AAATTTTAGAGACTTTTTTAG
1 AATTTTTAGA-A-ATTTTTAG
15268608 AATTTTTAGAAAATTTTTA-
1 AATTTTTAG-AAATTTTTAG
* * *
15268627 AATTTTTAGATATTTTAAAA
1 AATTTTTAGAAATTTT-TAG
* *
15268647 AAGTTTTAGAATTTTTTAG
1 AATTTTTAGAAATTTTTAG
15268666 AATTTTTAGAAATTTT
1 AATTTTTAGAAATTTT
15268682 ATTTTAATAC
Statistics
Matches: 76, Mismatches: 13, Indels: 13
0.75 0.13 0.13
Matches are distributed among these distances:
18 6 0.08
19 25 0.33
20 27 0.36
21 11 0.14
22 2 0.03
23 5 0.07
ACGTcount: A:0.37, C:0.01, G:0.10, T:0.51
Consensus pattern (19 bp):
AATTTTTAGAAATTTTTAG
Found at i:15270380 original size:698 final size:696
Alignment explanation
Indices: 15269391--15272711 Score: 1661
Period size: 698 Copynumber: 4.7 Consensus size: 696
15269381 TTATTGTAAC
* *
15269391 ATAAATAAATAATTATATTGATAACGTAAAATTTTAATTAATTATTGTTTTATAAATAT-CTAAT
1 ATAAATAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTTTTATAAATATAC-AAT
* * * *
15269455 GAAAATAGCTAAAAATTAAAAAATAAATTAGTAACATAAACAA-TGA-AAACAAACACAAAATTA
65 -AAAATAACTAAAAATTAAAAAATAAATAAGTAACATAAAAAAGTGAGAAA-AAACATAAAATTA
* * * * * * * ** * * * *
15269518 ATATCATTTGGTATAAAATTGATAAGAAGTATTGTAACACATTAATAAAGAA-TTATGACAATTT
128 GTATAATTTGATGTAAAATAGGTAAAAAGTATCATAACACACTAA-AAACAAGTTATTAAAATTT
* * * * * *
15269582 TAAACATAA-CACAAAGCAAAAACAA-C--AATAAGATATTATTGTAAAATAAATAATTATGTGG
192 TAAACATAATCA-AAAGTAAGAACAATCATAAAAAGAAATTATTGTAAAATAAATAATTAAGTGA
* *
15269643 ACAAAATAAATTTTTAATTAATTATTGGTCCTATAAATATATAAGAAAAATAACTAAGAATTAAA
256 ACAAAATAAAGTTTTAATTAATTATT-GT-CTATAAATATAT-A-AAAAATAACTAAAAATTAAA
* * * * * * *
15269708 AAA-AAATT-GATAATGTAAACAAAT-GAAAATTGTAAAATTAGTATCATTTGATGTTAAATGAG
317 AAACAAATTAG-CAATGTAAACAAATAGAAAAATATAAAATTAGTATCATTAGATATAAAATAAG
* *
15269770 TAAAAAGTATCATAATGCACACTAAAAAAGAACTATGATAATTCTAAACATAATAAAAAATAAGA
381 TAAAAAGTATCATAAT--ACACTAAAAAAGAACTATGACAATTCTAAAAATAATAAAAAATAAGA
* **
15269835 GCAATTGTAA-ATATATAGGATTATA-ATATAAATAATTATGA-AG-AATGTAAAATTTTAATTA
444 ACAATCATAATA-ATATAGGATT-TACA-ATAAATAATTAT-ATAGTAATGTAAAATTTTAATTA
* ** *
15269896 ACTATT-TTTTTGTATATATGAAGAAAATAGCTAAAAAATAAAAAATAAATTGGTAATGTAAACA
505 ACTATTGTTTATAAATATAT-AA-AAAATAGCT-AAAAAT-AAAAA-AAA-TGGTAACGTAAACA
* * *
15269960 AGTGAGAAGAAATGTAAAATTAATATCATTTGGAGGAAAAT-GAGTAAGAAGTGGT-GTA-ACAT
564 AGTAAGAACAAATGTAAAATTAATATCATTTGGAGGAAAATGGA-TAAAAAGT-GTAGTACACAT
** *
15270022 -ATTAAGAAAAA-A-TTAT-GAAAGTTTTAAATATAATGAAAAGTAAGAA-CAAT-AAAAAAAGA
627 AAAAAAAAAAAAGAGTTATGGAAA-TTTTAAATATAATGAAAAGTAA-AACCAATCAAAAAAAGA
15270081 TATTATT
690 TATTATT
* * * * *
15270088 ATACCATAAATAATTATGTTGATAATGTAAAGTTTTAACTAATTATTATTTTTTAAATATACAAT
1 ATA-AATAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTTTTATAAATATACAAT
* * *
15270153 AAAAGTAACTAAAAGTTGAAGAAAATAAATAAGTAACTTAAAAAAGTGAGAAAAAAAATAAAATT
65 AAAA-TAACTAAAAATT-AA-AAAATAAATAAGTAACATAAAAAAGTGAGAAAAAACATAAAATT
*
15270218 AGTATAATTTGATGTAAAATAGGTAAAAAGTATCATAACACACTAAAAA-AAGTTATTAAAATTC
127 AGTATAATTTGATGTAAAATAGGTAAAAAGTATCATAACACACTAAAAACAAGTTATTAAAATTT
* * * *
15270282 TAAACATAATTAAAAGTAAGAATAATCATAAAAAGAAATTATTGTAATATAAATAATTAAGTTAA
192 TAAACATAATCAAAAGTAAGAACAATCATAAAAAGAAATTATTGTAAAATAAATAATTAAGTGAA
* * **
15270347 TAACATAAAGTTTTAATTAATTATT-T-T-TAAATATATAAAAAATAGTTAAAAATTAAAAAACA
257 CAAAATAAAGTTTTAATTAATTATTGTCTATAAATATATAAAAAATAACTAAAAATTAAAAAACA
* *
15270409 TATTAGCAATGTAAACAAGTGAGAAAAATATAAAATTAGTATCATTAGATATAAAATAAGTAAAA
322 AATTAGCAATGTAAACAAAT-AGAAAAATATAAAATTAGTATCATTAGATATAAAATAAGTAAAA
* * * * ** * * * *
15270474 ATTGTTATCATACACTAAAAAAGAGTTATGACAATTTTAAAAATAATAAAAATTACGAATAATCA
386 AGTATCATAATACACTAAAAAAGAACTATGACAATTCTAAAAATAATAAAAAATAAGAACAATCA
** * * * *
15270539 TAATAATATATTATTTACAGTAAATAATTATATTGTTAATTTAAAATTTTAATTAATTATTGTTT
451 TAATAATATAGGATTTACAATAAATAATTATATAG-TAATGTAAAATTTTAATTAACTATTGTTT
* * * * * * *
15270604 ATAAATATATAAAAATTATCTAGAAATTAAAAAAATGGTAACGTAAGCAAGTAAGAACAAATTTT
515 ATAAATATATAAAAAATAGCTAAAAATAAAAAAAATGGTAACGTAAACAAGTAAGAACAAATGTA
* * **
15270669 AAATTAATATCATTTGGTGTAATTTGGATAAAAAGTGTAGTATCACATAAAAAAAAAAAAGAGTT
580 AAATTAATATCATTTGGAGGAAAATGGATAAAAAGTGTAGTA-CACATAAAAAAAAAAAAGAGTT
* * * * *
15270734 ATGGCAATTTTAAATATTATGAAAAGTAAAACCAATCATAAGAATATATTATT
644 ATGGAAATTTTAAATATAATGAAAAGTAAAACCAATCAAAAAAAGATATTATT
* * * *
15270787 CTAAAGTAAATAATTATGTTGACAATGTAAAATTTTAATTAATTATTGTTCTTGTAAATATATAA
1 ATAAA-TAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTT-TTATAAATATACAA
* * * ** *
15270852 GAAAAATGACTAAAAATT-AAAAATCAAATTAA-TAA-AGTAAATAAGTGAGAAGTAACGTAAAA
64 -TAAAATAACTAAAAATTAAAAAAT-AAA-TAAGTAACA-TAAAAAAGTGAGAAAAAACATAAAA
* * * *
15270914 TTAGTATTATTTGAAGTAAAATGGGTAAGAAA-TATCACAACACACTAAAAACAAGTTA-TAACA
125 TTAGTATAATTTGATGTAAAATAGGTAA-AAAGTATCATAACACACTAAAAACAAGTTATTAA-A
* * * * *** * * **
15270977 ATTTTAAACGTAATGAAATGTAAGAACATTCAT-AAAATTTATTTTTATAACGTAAATAATT-A-
188 ATTTTAAACATAATCAAAAGTAAGAACAATCATAAAAAGAAATTATTGTAAAATAAATAATTAAG
* * * * * * *
15271039 TGACGACAATATAAAATTTTAATTAATTATTAT-TATTATTATATATAAGGGAAATAGCTAGAAA
253 TGA--ACAAAATAAAGTTTTAATTAATTATTGTCTA-TA-AATATATAA--AAAATAACTAAAAA
* * * *
15271103 TTAAAAAATAAATTGGCGTTAAATG-AGTAA-AATTAGAATCATTAGGTATAAAATTAGTATCAT
312 TTAAAAAACAAATTAGC----AATGTA--AACAAATAGAA--A--A-ATATAAAATTAGTATCAT
* * * * ** * * * * *
15271166 TTGACATAAAATAAGTAAGAAGTGTTGTAACACATTAATAAAGAATTATGACAATTCTAAATATA
366 TAGATATAAAATAAGTAAAAAGTATCATAATACACTAAAAAAGAACTATGACAATTCTAAAAATA
* * * * * * * * ** * * **
15271231 ACATAAAGTAAAAATAA-CCTGAAGAAGATATTATTGTA-AAGTAAATAATTATGTTGATAAAAT
431 ATAAAAAATAAGAACAATCAT-AATAATATAGGATT-TACAA-TAAATAATTATATAG-TAATGT
* * *
15271294 AAAATTTTAATTAATTATTGTTCTTGTAAATATATAAGAAAAATAACTAAAAATTAAAAAGTAAA
492 AAAATTTTAATTAACTATTG-T-TTATAAATATAT-A-AAAAATAGCTAAAAA-TAAAAA--AAA
* * * * * **
15271359 TTGATAATGTAAACAA--ATGAA-AAATGTAAAATTAGTATCATTTGGTGTTAAAT-GAGTAAAA
550 -TGGTAACGTAAACAAGTAAGAACAAATGTAAAATTAATATCATTTGGAGGAAAATGGA-TAAAA
* * * * ** *** * * * *
15271420 AGTATTGTA-ACA-CACACTAAAAAAGAACCAT-AACAATTCTAAACATAATGAAAAATAAGAA-
613 AGTGTAGTACACATAAAAAAAAAAAAGAGTTATGGA-AATTTTAAATATAATGAAAAGTAA-AAC
*** * *
15271481 CAATTTTAAAAATATAGTATT
676 CAATCAAAAAAAGATATTATT
* * * * *
15271502 ATAATATAAATAATTATGATGATAATGTAAAATTTTAATTAACTATT-TTTTGTATATATA-AAG
1 ATAA-ATAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTTTTATAAATATACAAT
* ** * * ** *
15271565 AAAATAGCTAAAAATTAAAAAATAAATTGGTAATATAAACAAGTGAG-AAAAATGTAAAATTAAT
65 AAAATAACTAAAAATTAAAAAATAAATAAGTAACATAAAAAAGTGAGAAAAAACATAAAATTAGT
* * * * * * *** * *
15271629 ATCATCTAGA-GTAAAAT-GAGTAAGAAGTGTCGTAATATTTTAAGAAA-AAGTTATGACAATTT
130 ATAAT-TTGATGTAAAATAG-GTAAAAAGTATCATAACACACTAA-AAACAAGTTATTAAAATTT
** ** * * * * * * ** *
15271691 TAAATGTAATGGAAAGTAATAACAAACGTGAGAAA-ATATTATTATACCATAAATAATTATGTTG
192 TAAACATAATCAAAAGTAAGAACAATCAT-AAAAAGAAATTATTGTAAAATAAATAATTAAG-TG
* ** ** * * * *
15271755 -ATAATGTAAAGTTTTAACCAATTATTATTTTTTAAATATATAAGCAAAATAGCTAAAAATTGAA
255 AACAAAATAAAGTTTTAATTAATTATT-GTCTATAAATATATAA--AAAATAACTAAAAATT-AA
* * * ** * * * * **
15271819 AAAATAAATAAGTAACATAAA-AAATTAAGAAAAACATAAAATTATTATAATTTGACGTAAAATA
316 AAAACAAATTAGCAATGTAAACAAA-T-AGAAAAATATAAAATTAGTATCATTAGATATAAAATA
* * * ** * * *
15271883 GGTAAAAAATATCATAACACACTAAAAAA-AGTTATGACAATTCTAAACATAATTAAAAGTAAG-
379 AGTAAAAAGTATCATAATACACTAAAAAAGAACTATGACAATTCTAAAAATAATAAAAAATAAGA
* * * * * ** *
15271946 ATAATCTTAAAAAGAAATTATTGTA-ATATAAATAATTA-AGTTATTAATGTAAAATTTTAATTA
444 ACAATCATAATAATATAGGATT-TACA-ATAAATAATTATA--TAGTAATGTAAAATTTTAATTA
* * * * * ** *
15272009 ATTA-T-TCT-TAAATATATAACAAAAAAAGTTAAAAATTAAAAAATATATTACCCATGTAAACA
505 ACTATTGTTTATAAATATAT-A-AAAAATAGCTAAAAA-TAAAAAAAATGGTA---ACGTAAACA
* * ** * * * * *
15272071 AGTGAGAAAAAATAAAAAATTAGTATCATTTGGCA-TAAAAT-AAGTAAAAATTGT--TATA-AT
564 AGTAAGAACAAATGTAAAATTAATATCATTTGG-AGGAAAATGGA-TAAAAAGTGTAGTACACAT
**** * * * * * *
15272131 -ATGCTAAAAAA-AGTTAT-GATAATTTTAAATGTAATAAAAATTACGAA-CAATC-ATAATAGT
627 AAAAAAAAAAAAGAGTTATGGA-AATTTTAAATATAATGAAAAGTA-AAACCAATCAAAAAAAG-
15272191 ATATTATT
689 ATATTATT
* * * * *
15272199 -TAATTTAAATAATTATATT-ATCAATTTAAAA-TTTAATTAATTATTATTTTATAGATAT-CTA
1 ATAA-ATAAATAATTATGTTGAT-AATGTAAAATTTTAATTAATTATTGTTTTATAAATATAC-A
** * * ** *
15272260 A-AAAA-AAGCTAAAAATT--AAAA-AAATTGGTAACCTAAACAAGCAAGAACAAACATAAAATT
63 ATAAAATAA-CTAAAAATTAAAAAATAAATAAGTAACATAAAAAAGTGAGAAAAAACATAAAATT
* * * * * * * * ***
15272320 AATATCATTTGGTGTATATTAGGTAAAAAGTGT-AGTAACACAC-AAAAAAATAATTATGGCAAT
127 AGTATAATTTGATGTAAAATAGGTAAAAAGTATCA-TAACACACTAAAAACA-AGTTATTAAAAT
** * * * * * * * * * *
15272383 TTTAAGTATTATGAAAAGTAAAAACATTCCTAAGAATAAATTATTGTAAAGTAAATAATTATGTT
190 TTTAAACATAATCAAAAGTAAGAACAATCATAAAAAGAAATTATTGTAAAATAAATAATTAAGTG
* *** * * * *
15272448 AGCAGTGTAAAATTTTAATTAATTATTGTTCTTGTAAATATATAAGAAAAATGACCAAAAATT-A
255 AACAAAATAAAGTTTTAATTAATTATTG-TC-TATAAATATAT-A-AAAAATAACTAAAAATTAA
* * ** * * * *
15272512 AAATCAAATT-GATAAAATAAACAAGTGAGAAGTAATATAAAATTAGCATCATTTGA-AGTAAAA
316 AAAACAAATTAG-CAATGTAAACAAAT-AGAA-AAATATAAAATTAGTATCATTAGATA-TAAAA
* * * * * * * * ** *
15272575 T-GGTAAGAAA-TGTCATAACACAGTAAAAACA-AGCTATAATAATTTTAAACGTAATGAAAAAT
377 TAAGTAA-AAAGTATCATAATACACTAAAAA-AGAACTATGACAATTCTAAAAATAATAAAAAAT
* ** * *
15272637 AAGAAAAATCATAA-AACT-TA-TTTTTATAACATAAATAATTATGAT-GAAAATGTAAAATTTT
440 AAGAACAATCATAATAA-TATAGGATTTA-CA-ATAAATAATTAT-ATAG-TAATGTAAAATTTT
*
15272698 AATTAATTATTGTT
500 AATTAACTATTGTT
15272712 ATTGTGTGTG
Statistics
Matches: 2073, Mismatches: 410, Indels: 283
0.75 0.15 0.10
Matches are distributed among these distances:
692 8 0.00
693 130 0.06
694 221 0.11
695 60 0.03
696 102 0.05
697 173 0.08
698 257 0.12
699 165 0.08
700 111 0.05
701 59 0.03
702 62 0.03
703 84 0.04
704 72 0.03
705 1 0.00
707 10 0.00
708 10 0.00
709 11 0.01
710 71 0.03
711 104 0.05
712 122 0.06
713 51 0.02
714 5 0.00
715 101 0.05
716 7 0.00
717 14 0.01
718 43 0.02
719 4 0.00
720 3 0.00
721 12 0.01
ACGTcount: A:0.52, C:0.06, G:0.10, T:0.32
Consensus pattern (696 bp):
ATAAATAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTTTTATAAATATACAATA
AAATAACTAAAAATTAAAAAATAAATAAGTAACATAAAAAAGTGAGAAAAAACATAAAATTAGTA
TAATTTGATGTAAAATAGGTAAAAAGTATCATAACACACTAAAAACAAGTTATTAAAATTTTAAA
CATAATCAAAAGTAAGAACAATCATAAAAAGAAATTATTGTAAAATAAATAATTAAGTGAACAAA
ATAAAGTTTTAATTAATTATTGTCTATAAATATATAAAAAATAACTAAAAATTAAAAAACAAATT
AGCAATGTAAACAAATAGAAAAATATAAAATTAGTATCATTAGATATAAAATAAGTAAAAAGTAT
CATAATACACTAAAAAAGAACTATGACAATTCTAAAAATAATAAAAAATAAGAACAATCATAATA
ATATAGGATTTACAATAAATAATTATATAGTAATGTAAAATTTTAATTAACTATTGTTTATAAAT
ATATAAAAAATAGCTAAAAATAAAAAAAATGGTAACGTAAACAAGTAAGAACAAATGTAAAATTA
ATATCATTTGGAGGAAAATGGATAAAAAGTGTAGTACACATAAAAAAAAAAAAGAGTTATGGAAA
TTTTAAATATAATGAAAAGTAAAACCAATCAAAAAAAGATATTATT
Found at i:15270598 original size:465 final size:469
Alignment explanation
Indices: 15269417--15270612 Score: 1014
Period size: 465 Copynumber: 2.6 Consensus size: 469
15269407 ATTGATAACG
* * * * *
15269417 TAAAATTTTAATTAATTATTGTTTTATAAATATCT-AATGAAAATAGCTAAAAATTAAAAAATAA
1 TAAAATTTTAATTAACTA-TATTTT-TAAATATATGAA-GAAAATAGCTAAAAAATAAAAAACAA
* ** * * * * * * * *
15269481 ATTAGTAACATAAACAA-TGAAAACAAACACAAAATTAATATCATTTGGTATAAAAT-TGATAAG
63 ATTAGCAATGTAAACAAGTGAGAAGAAATATAAAATTAATATCATTTAGAAGAAAATAAG-TAAG
* ** * * * * * * * * *
15269544 AAGTATTGTAACACATTAATAAAGAATTATGACAA-TTTTAAACATAACACAAAGCAAAAAC-A-
127 AAATGGTGTAACATACTAAGAAAAAATTATGA-AAGTTTTAAAAATAATAAAAAGTAAGAACAAT
* * * ** * * * ** * *
15269606 ACAATAAGATATTATTGTAAAATAAATAATTATGTGGACAAAATAAATTTTTAATTAATTATTGG
191 AAAAAAAGATATTATTATACCATAAATAATTATATTGATAATGTAAAATTTTAACTAATTATT-G
* * * * *
15269671 TCCTATAAATATATAAGAAAAATAACTAAGAA-TT-AA-AAAA-AAAT-TGATAA-TGTAAACAA
255 T-TTATAAATATACAATAAAAGTAACTAA-AAGTTGAAGAAAATAAATAAG-TAACT-TAAA-AA
*** * *
15269730 A-T--G-AAAATTGTAAAATTAGTATCATTTGATGTTAAATGAGTAAAAAGTATCATAATGCACA
315 AGTGAGAAAAAAAATAAAATTAGTATAATTTGATGTAAAATGAGTAAAAAGTATCATAA-GCACA
* * ** * * *
15269791 CTAAAAAAGAACTATGATAATTCTAAACATAATAAAAAATAAGAGCAATTGTAAATATATAGGAT
379 CTAAAAAAGAACTATGAAAATTCTAAACATAATAAAAAATAAGAACAATCATAAAAAGAAAGGAT
**
15269856 TATAATATAAATAATTATGAAGAATG
444 TATAATATAAATAATTATGAAGAACA
* ** *
15269882 TAAAATTTTAATTAACTATTTTTTTGTATATATGAAGAAAATAGCTAAAAAATAAAAAATAAATT
1 TAAAATTTTAATTAACTATATTTTTAAATATATGAAGAAAATAGCTAAAAAATAAAAAACAAATT
* * * * * * *
15269947 GGTAATGTAAACAAGTGAGAAGAAATGTAAAATTAATATCATTTGGAGGAAAATGAGTAAGAAGT
66 AGCAATGTAAACAAGTGAGAAGAAATATAAAATTAATATCATTTAGAAGAAAATAAGTAAGAAAT
* * *
15270012 GGTGTAACATATTAAGAAAAAATTATGAAAGTTTTAAATATAATGAAAAGTAAGAACAATAAAAA
131 GGTGTAACATACTAAGAAAAAATTATGAAAGTTTTAAAAATAATAAAAAGTAAGAACAATAAAAA
* * * *
15270077 AAGATATTATTATACCATAAATAATTATGTTGATAATGTAAAGTTTTAACTAATTATTATTTTTT
196 AAGATATTATTATACCATAAATAATTATATTGATAATGTAAAATTTTAACTAATTATT-GTTTAT
15270142 AAATATACAATAAAAGTAACTAAAAGTTGAAGAAAATAAATAAGTAACTTAAAAAAGTGAGAAAA
260 AAATATACAATAAAAGTAACTAAAAGTTGAAGAAAATAAATAAGTAACTTAAAAAAGTGAGAAAA
15270207 AAAATAAAATTAGTATAATTTGATGTAAAAT-AGGTAAAAAGTATCATAA-CACACTAAAAAA-A
325 AAAATAAAATTAGTATAATTTGATGTAAAATGA-GTAAAAAGTATCATAAGCACACTAAAAAAGA
** * * * * ** *
15270269 GTTATTAAAATTCTAAACATAATTAAAAGTAAGAATAATCATAAAAAGAAATTATTGTAATATAA
389 ACTATGAAAATTCTAAACATAATAAAAAATAAGAACAATCATAAAAAGAAAGGATTATAATATAA
* *
15270334 ATAATTAAGTTAATAACA
454 ATAATT-A-TGAAGAACA
* * * *
15270352 TAAAGTTTTAATTAA-T-TATTTTTAAATATAT-AA-AAAATAGTTAAAAATTAAAAAACATATT
1 TAAAATTTTAATTAACTATATTTTTAAATATATGAAGAAAATAGCTAAAAAATAAAAAACAAATT
* *
15270413 AGCAATGTAAACAAGTGAGAA-AAATATAAAATTAGTATCA-TTAGATATAAAATAAGTAA-AAA
66 AGCAATGTAAACAAGTGAGAAGAAATATAAAATTAATATCATTTAGA-AGAAAATAAGTAAGAAA
* * * * * *
15270475 TTGT-TATCATACACTAA-AAAAGAGTTATGACAA-TTTTAAAAATAATAAAAATTACGAATAAT
130 TGGTGTAACAT--ACTAAGAAAA-AATTATGA-AAGTTTTAAAAATAATAAAAAGTAAGAACAAT
* * * * * *
15270537 CATAATAATATATTATT-TA-CAGTAAATAATTATATTGTTAATTTAAAATTTTAATTAATTATT
191 -AAAAAAAGATATTATTATACCA-TAAATAATTATATTGATAATGTAAAATTTTAACTAATTATT
15270600 GTTTATAAATATA
254 GTTTATAAATATA
15270613 TAAAAATTAT
Statistics
Matches: 596, Mismatches: 109, Indels: 53
0.79 0.14 0.07
Matches are distributed among these distances:
463 52 0.09
464 117 0.20
465 143 0.24
466 113 0.19
467 9 0.02
468 80 0.13
469 16 0.03
470 21 0.04
471 45 0.08
ACGTcount: A:0.53, C:0.05, G:0.10, T:0.32
Consensus pattern (469 bp):
TAAAATTTTAATTAACTATATTTTTAAATATATGAAGAAAATAGCTAAAAAATAAAAAACAAATT
AGCAATGTAAACAAGTGAGAAGAAATATAAAATTAATATCATTTAGAAGAAAATAAGTAAGAAAT
GGTGTAACATACTAAGAAAAAATTATGAAAGTTTTAAAAATAATAAAAAGTAAGAACAATAAAAA
AAGATATTATTATACCATAAATAATTATATTGATAATGTAAAATTTTAACTAATTATTGTTTATA
AATATACAATAAAAGTAACTAAAAGTTGAAGAAAATAAATAAGTAACTTAAAAAAGTGAGAAAAA
AAATAAAATTAGTATAATTTGATGTAAAATGAGTAAAAAGTATCATAAGCACACTAAAAAAGAAC
TATGAAAATTCTAAACATAATAAAAAATAAGAACAATCATAAAAAGAAAGGATTATAATATAAAT
AATTATGAAGAACA
Found at i:15271174 original size:21 final size:21
Alignment explanation
Indices: 15271130--15271182 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
15271120 GTTAAATGAG
* **
15271130 TAAAATTAGAATCATTAGGTA
1 TAAAATTAGTATCATTAGACA
*
15271151 TAAAATTAGTATCATTTGACA
1 TAAAATTAGTATCATTAGACA
*
15271172 TAAAATAAGTA
1 TAAAATTAGTA
15271183 AGAAGTGTTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.49, C:0.06, G:0.11, T:0.34
Consensus pattern (21 bp):
TAAAATTAGTATCATTAGACA
Found at i:15271312 original size:479 final size:463
Alignment explanation
Indices: 15269391--15272117 Score: 1259
Period size: 468 Copynumber: 5.8 Consensus size: 463
15269381 TTATTGTAAC
* * * *
15269391 ATAAA-TAAATAATTATATTGATAACGTAAAATTTTAATTAATTATTGTT-TTATAAATATCTAA
1 ATAAAGTAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTTCTTGTAAATATATAA
* * * **
15269454 TG-AAAATAGCTAAAAATTAAAAAATAAATTAGTAACA-T-AAACAATGAAAACAAACACAAAAT
66 -GAAAAATA-CTAAAAATT-AAAAATAAATTAATAA-AGTAAAAAAATG-AGA-AAACGTAAAAT
* * * * * * ** * *
15269516 TAATATCATTTGGTA-TAAAATTGATAAGAAGTATTGTAACACATTAATAAAGAA-TTATGACAA
125 TAGTATAATTT-GAAGTAAAATGGGTAA-AAATA-TCAAACACACTAA-AAA-AAGTTATAACAA
* * * * ** * * *
15269579 TTTTAAACATAA-CACAAAGCAAAAACAACAAT-AAGATAT--TATTGTAAAATAAATAATTATG
185 TTCTAAACATAATGA-AAAGTAAGAACAATTATAAAAATATAGTATTATAACATAAATAATTATG
** * * * ** * * * *
15269640 TGGACAAAATAAATTTTTAATTAATTATTGGTCCTATAAATATATAAGAAAAATAACTAAGAATT
249 ACGACAATATAAAATTTTAATTAACTATT--TTTTGTATATATA-AAG-AAAATAGCTAAAAATT
* * * * * * * * *
15269705 AAAAAA-AAATTGATAATGTAAACAAAT--GAAAATTGTAAAATTAGTATCAT-TTGATGTTAAA
310 AAAAAATAAATTGGTAATATAAACAAGTGAGAAAAATATAAAATTAATATCATCTAGA-ATAAAA
* * * * * ** * * * * *
15269766 TGAGTAAAAAGTATCATAATGCACACTAA-AAAAGAACTATGATAATTCTAAACATAATAAAAAA
374 TAAGTAAGAAGTGTCGTAA--CACATTAAGAAAA-AGTTATGACAATTCTAAATATAACAGAAAG
* * * * **
15269830 TAAGAGC-AA-TTGTAA-ATATATAGGATT
436 TAATAACAAACCTG-AAGA-AAATATTATT
* * * *
15269857 ATAATA-TAAATAATTATG--AAGAATGTAAAATTTTAATTAACTATT-TTTTTGT--ATATATG
1 ATAA-AGTAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTTCTTGTAAATATAT-
* ** * * * *
15269916 AAG-AAAATAGCTAAAAAATAAAAAATAAATTGGTAATGTAAACAAGTGAGAAGAAATGTAAAAT
64 AAGAAAAATA-CT-AAAAATTAAAAATAAATTAATAAAGTAAAAAAATGAG-A-AAACGTAAAAT
* * * * * * * ** * * * *
15269980 TAATATCATTTGGAGGAAAATGAGTAAGAAGTGGTGTAACATATTAAGAAAAAATTATGAA-AGT
125 TAGTATAATTTGAAGTAAAATGGGTAA-AAAT-ATCAAACACACTAA-AAAAAGTTAT-AACAAT
* * * * * * **
15270044 TTTAAATATAATGAAAAGTAAGAACAA-TAAAAAAAGATATTATTATACCATAAATAATTATGTT
186 TCTAAACATAATGAAAAGTAAGAACAATTATAAAAATATAGTATTATAACATAAATAATTATGAC
* * * * * * * * * *
15270108 GATAATGTAAAGTTTTAACTAATTATTATTTTTTAAATATACAATAAAAGTAACTAAAAGTTGAA
251 GACAATATAAAATTTTAATTAACTATT-TTTTGTATATATA-AAGAAAA-TAGCTAAAAATT-AA
** * * * * * *
15270173 GAAAATAAATAAGTAACT-TAAAAAAGTGAGAAAAAAAATAAAATTAGTATAAT-TTGATGTAAA
312 -AAAATAAATTGGTAA-TATAAACAAGTGAG-AAAAATATAAAATTAATATCATCTAGA-ATAAA
* * * * * * * * *
15270236 ATAGGTAAAAAGTATCATAACACACTAA-AAAAAGTTATTAAAATTCTAAACATAATTA-AAAGT
373 ATAAGTAAGAAGTGTCGTAACACATTAAGAAAAAGTTATGACAATTCTAAATATAA-CAGAAAGT
* * * * *
15270299 AAGAATAATCAT-AA-AAAGAAATTATT
437 AATAACAAACCTGAAGAAA-ATATTATT
* * * ** *
15270325 GTAATA-TAAATAATTAAGTTAATAACATAAAGTTTTAATTAATTA---TT-TT-TAAATATAT-
1 ATAA-AGTAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTTCTTGTAAATATATA
* ** * * * **
15270383 A-AAAAATAGTTAAAAATTAAAAA-ACATATTAGCAATGTAAACAAGTGAGAAAAATATAAAATT
65 AGAAAAATA-CTAAAAATTAAAAATA-A-ATTAATAAAGTAAAAAAATGAG-AAAACGTAAAATT
* * ** * * * * *
15270446 AGTATCATTAGATA-TAAAATAAGTAAAAATTGTTATCATACACTAAAAAAGAGTTATGACAATT
126 AGTATAATTTGA-AGTAAAATGGGTAAAAA-TATCA-AACACACTAAAAAA-AGTTATAACAATT
* * * * * * * * *
15270510 TTAAAAATAATAAAAATTACGAATAATCATAATAATATATTATT-T-ACAGTAAATAATTAT-AT
187 CTAAACATAATGAAAAGTAAGAACAATTATAAAAATATAGTATTATAACA-TAAATAATTATGA-
* ** * * * * * * * *
15270572 TGTTAATTTAAAATTTTAATTAATTATTGTTTATAAATATATAA-AAATTATCTAGAAATT--AA
250 CGACAATATAAAATTTTAATTAACTATTTTTTGTATATATA-AAGAAAATAGCTAAAAATTAAAA
** * * * * * * ** * **
15270634 AA-AAA-TGGTAACGTAAGCAAGTAAGAACAAATTTTAAATTAATATCATTTGGTGT-AATTTGG
314 AATAAATTGGTAATATAAACAAGTGAGAA-AAATATAAAATTAATATCATCTAGAATAAAATAAG
* * * * * * * * *
15270696 ATAAAAAGTGTAGTATCACATAAAAAAAAAAAAGAGTTATGGCAATTTTAAATATTA-TGAAAAG
378 -TAAGAAGTGTCGTAACACAT----TAAGAAAA-AGTTATGACAATTCTAAATATAACAG-AAAG
* * *
15270760 TAA-AACCAATCAT-AAGAATATATTATT
436 TAATAA-CAAACCTGAAGAAAATATTATT
* *
15270787 CTAAAGTAAATAATTATGTTGACAATGTAAAATTTTAATTAATTATTGTTCTTGTAAATATATAA
1 ATAAAGTAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTTCTTGTAAATATATAA
* *
15270852 GAAAAATGACTAAAAATTAAAAATCAAATTAATAAAGTAAATAAGTGAGAAGTAACGTAAAATTA
66 GAAAAAT-ACTAAAAATTAAAAAT-AAATTAATAAAGTAAAAAAATGAGAA--AACGTAAAATTA
* *
15270917 GTATTATTTGAAGTAAAATGGGTAAGAAATATCACAACACACTAAAAACAAGTTATAACAATTTT
127 GTATAATTTGAAGTAAAATGGGTAA-AAATATCA-AACACACTAAAAA-AAGTTATAACAATTCT
* * * * * *
15270982 AAACGTAATGAAATGTAAGAAC-ATTCAT-AAAATTTATTTTTATAACGTAAATAATTATGACGA
189 AAACATAATGAAAAGTAAGAACAATT-ATAAAAATATAGTATTATAACATAAATAATTATGACGA
* * * * *
15271045 CAATATAAAATTTTAATTAATTATTATTATTATTATATATAAGGGAAATAGCTAGAAATTAAAAA
253 CAATATAAAATTTTAATTAACTATT-TT-TT-GTATATATAAAGAAAATAGCTAAAAATTAAAAA
* * * *
15271110 ATAAATTGGCGTTAA-ATGAGTAA-AA-TTAGAATCATTAGGTATAAAATTAGTATCAT-TTGAC
315 ATAAATT-G-G-TAATAT-A--AACAAGTGAGAA--A--A-ATATAAAATTAATATCATCTAGA-
* * *
15271171 ATAAAATAAGTAAGAAGTGTTGTAACACATTAATAAAGAA-TTATGACAATTCTAAATATAACAT
368 ATAAAATAAGTAAGAAGTGTCGTAACACATTAAGAAA-AAGTTATGACAATTCTAAATATAACAG
*
15271235 AAAGTAA-AA-ATAACCTGAAGAAGATATTATT
432 AAAGTAATAACA-AACCTGAAGAAAATATTATT
* **
15271266 GTAAAGTAAATAATTATGTTGATAAAATAAAATTTTAATTAATTATTGTTCTTGTAAATATATAA
1 ATAAAGTAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTTCTTGTAAATATATAA
* * * *
15271331 GAAAAATAACTAAAAATTAAAAAGTAAATTGATAATGTAAACAAATGA-AAAATGTAAAATTAGT
66 GAAAAAT-ACTAAAAATTAAAAA-TAAATTAATAAAGTAAAAAAATGAGAAAACGTAAAATTAGT
* ** * * * ***
15271395 ATCATTTGGTGTTAAATGAGTAAAAAGTATTGTAACACACACTAAAAAAGAACCATAACAATTCT
129 ATAATTTGAAGTAAAATGGGTAAAAA-TA-T-CAA-ACACACTAAAAAA-AGTTATAACAATTCT
* * * * *
15271460 AAACATAATGAAAAATAAGAACAATTTTAAAAATATAGTATTATAATATAAATAATTATGATGAT
189 AAACATAATGAAAAGTAAGAACAATTATAAAAATATAGTATTATAACATAAATAATTATGACGAC
*
15271525 AATGTAAAATTTTAATTAACTATTTTTTGTATATATAAAGAAAATAGCTAAAAATTAAAAAATAA
254 AATATAAAATTTTAATTAACTATTTTTTGTATATATAAAGAAAATAGCTAAAAATTAAAAAATAA
* * *
15271590 ATTGGTAATATAAACAAGTGAGAAAAATGTAAAATTAATATCATCTAGAGTAAAATGAGTAAGAA
319 ATTGGTAATATAAACAAGTGAGAAAAATATAAAATTAATATCATCTAGAATAAAATAAGTAAGAA
* ** * * ** *
15271655 GTGTCGTAATATTTTAAGAAAAAGTTATGACAATTTTAAATGTAATGGAAAGTAATAACAAACGT
384 GTGTCGTAACACATTAAGAAAAAGTTATGACAATTCTAAATATAACAGAAAGTAATAACAAACCT
15271720 G-AGAAAATATTATT
449 GAAGAAAATATTATT
* * ** * *
15271734 ATACCA-TAAATAATTATGTTGATAATGTAAAGTTTTAACCAATTATTATT-TTTTAAATATATA
1 ATA-AAGTAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTTCTTGTAAATATATA
* * * *
15271797 AGCAAAATAGCTAAAAATTGAAAAAATAAA-TAAGTAACA-TAAAAAATTAAGAAAAACATAAAA
65 AGAAAAATA-CTAAAAATT--AAAAATAAATTAA-TAA-AGTAAAAAAATGAG-AAAACGTAAAA
* * * *
15271860 TTATTATAATTTGACGTAAAATAGGTAAAAAATATCATAACACACTAAAAAAAGTTATGACAATT
124 TTAGTATAATTTGAAGTAAAATGGGT-AAAAATATCA-AACACACTAAAAAAAGTTATAACAATT
* * * * * * * * *
15271925 CTAAACATAATTAAAAGTAAG-ATAATCT-TAAAAAGAAATTATTGTAATATAAATAATTAAG-T
187 CTAAACATAATGAAAAGTAAGAACAAT-TATAAAAATATAGTATTATAACATAAATAATTATGAC
* * * * * ** * *
15271987 TATTAATGTAAAATTTTAATTAATTA-TTCTTAAATATATAACA-AAAAAAGTTAAAAATTAAAA
251 GA-CAATATAAAATTTTAATTAACTATTTTTTGTATATATAA-AGAAAATAGCTAAAAATTAAAA
* **** * * * * * *
15272050 AATATATTACCCATGTAAACAAGTGAGAAAAAATAAAAAATTAGTATCATTTGGCATAAAATAAG
314 AATAAATTGGTAATATAAACAAGTGAG-AAAAATATAAAATTAATATCATCTAGAATAAAATAAG
15272115 TAA
378 TAA
15272118 AAATTGTTAT
Statistics
Matches: 1787, Mismatches: 345, Indels: 258
0.75 0.14 0.11
Matches are distributed among these distances:
455 7 0.00
456 45 0.03
457 5 0.00
458 4 0.00
460 2 0.00
461 7 0.00
462 84 0.05
463 42 0.02
464 124 0.07
465 219 0.12
466 184 0.10
467 89 0.05
468 228 0.13
469 85 0.05
470 165 0.09
471 62 0.03
472 5 0.00
473 29 0.02
474 3 0.00
475 8 0.00
476 72 0.04
477 7 0.00
478 52 0.03
479 198 0.11
480 16 0.01
481 5 0.00
482 1 0.00
483 3 0.00
484 32 0.02
485 4 0.00
ACGTcount: A:0.52, C:0.06, G:0.10, T:0.32
Consensus pattern (463 bp):
ATAAAGTAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTTCTTGTAAATATATAA
GAAAAATACTAAAAATTAAAAATAAATTAATAAAGTAAAAAAATGAGAAAACGTAAAATTAGTAT
AATTTGAAGTAAAATGGGTAAAAATATCAAACACACTAAAAAAAGTTATAACAATTCTAAACATA
ATGAAAAGTAAGAACAATTATAAAAATATAGTATTATAACATAAATAATTATGACGACAATATAA
AATTTTAATTAACTATTTTTTGTATATATAAAGAAAATAGCTAAAAATTAAAAAATAAATTGGTA
ATATAAACAAGTGAGAAAAATATAAAATTAATATCATCTAGAATAAAATAAGTAAGAAGTGTCGT
AACACATTAAGAAAAAGTTATGACAATTCTAAATATAACAGAAAGTAATAACAAACCTGAAGAAA
ATATTATT
Found at i:15271535 original size:236 final size:231
Alignment explanation
Indices: 15268914--15272716 Score: 2076
Period size: 236 Copynumber: 16.3 Consensus size: 231
15268904 TTAACCCTAC
* * ** ** * *
15268914 AAATATATTATTGTAATATAAATAATTATGTTGGCAACATAAAATTTTAATTAATTATTATTTTT
1 AAATATATTATTATAA-ATAAATAATTATGATGATAATGTAAAATTTTAATTAATTATTGTTTTG
* * * *
15268979 TACATATATAAGAAAAATAGTTAAAAATTAAAAAATAAA-TAAGTAACGTAAAACAACATGAAAA
65 TAAATATATAAGAAAAATAGCTAAAAATTAAAAAATAAATTGA-TAATGT-AAACAA-ATGAAAA
* * * * * * * ** *
15269043 ACATAAAATGAGTATTATTTGGTATAAAAT-AGGTAAAAAATGTTACAACACACACTAAGAAATA
127 ATATAAAATTAGTATCATTTGATGTAAAATGA-GTAAAAAGTATT-GTA-ACACACTAA-AAAAA
** * * * * * * * * *
15269107 GCTATTATAACTCTAAACGTATTTAAAAATAAGAATAATCATAA
188 ATTATGACAATTTTAAACATAATGAAAAGTAAGAACAATCATAA
* * * ** * *
15269151 AAA-A-ATTATTGTAATATAAATAATTAAGTTG-TCAACATAAAAATTTAATTAATTACT-TTTT
1 AAATATATTATTATAA-ATAAATAATTATGATGAT-AATGTAAAATTTTAATTAATTATTGTTTT
* * * ** *
15269212 -TAAACATAT---AAAAATAG-TTAAAATTAAAAAAT--ATTGTTAATGTAATTAAGTGAAAAAA
64 GTAAATATATAAGAAAAATAGCTAAAAATTAAAAAATAAATTGATAATGTAAACAAATG--AAAA
* * * * * * * ** * * * *
15269270 ATGTGAAATTAGTATTATTT-AGCGCAAAATGCA-TATAAATTATCATAATACATTAAAAAGAGT
127 ATATAAAATTAGTATCATTTGA-TGTAAAATG-AGTAAAAAGTATTGTAACACACTAAAAAAAAT
* *
15269333 TACGACAATTTTAAACGA-AATGAAAAGTAAAAACAAT-ATAA
190 TATGACAATTTTAAAC-ATAATGAAAAGTAAGAACAATCATAA
** *
15269374 CAACATATTATTGTAACATAAATAAATAATTAT-ATTGATAACGTAAAATTTTAATTAATTATTG
1 -AA-ATA-TA-T-TATTATAAATAAATAATTATGA-TGATAATGTAAAATTTTAATTAATTATTG
* * **
15269438 TTTTATAAATATCTAATG-AAAATAGCTAAAAATTAAAAAATAAATT-AGTAACATAAAC-AATG
60 TTTTGTAAATATATAA-GAAAAATAGCTAAAAATTAAAAAATAAATTGA-TAATGTAAACAAATG
* * * * * * *
15269500 AAAACAAACACAAAATTAATATCATTTGGTATAAAATTGA-TAAGAAGTATTGTAACACATTAAT
123 --AA-AAATATAAAATTAGTATCATTTGATGTAAAA-TGAGTAAAAAGTATTGTAACACACTAA-
* * * *
15269564 AAAGAATTATGACAATTTTAAACATAA-CACAAAGCAAAAACAA-C--AA
183 AAAAAATTATGACAATTTTAAACATAATGA-AAAGTAAGAACAATCATAA
* * * * ** * **
15269610 TAAGATATTATTGTAAAATAAATAATTATG-TGGACAAAATAAATTTTTAATTAATTATTGGTCC
1 AAATATATTATTAT-AAATAAATAATTATGAT-GATAATGTAAAATTTTAATTAATTATT-GTTT
* * * *
15269674 TATAAATATATAAGAAAAATAACTAAGAATTAAAAAA-AAATTGATAATGTAAACAAATGAAAAT
63 TGTAAATATATAAGAAAAATAGCTAAAAATTAAAAAATAAATTGATAATGTAAACAAATGAAAAA
* * ** *
15269738 TGTAAAATTAGTATCATTTGATGTTAAATGAGTAAAAAGTATCATAATGCACACTAAAAAAGAAC
128 TATAAAATTAGTATCATTTGATGTAAAATGAGTAAAAAGTATTGTAA--CACACTAAAAAA-AAT
* * * * * **
15269803 TATGATAATTCTAAACATAATAAAAAATAAGAGCAATTGTAA
190 TATGACAATTTTAAACATAATGAAAAGTAAGAACAATCATAA
* ** * * *
15269845 ATATATAGGATTATAATATAAATAATTATGA--AGAATGTAAAATTTTAATTAACTATTTTTTTG
1 AAATATATTATTATAA-ATAAATAATTATGATGATAATGTAAAATTTTAATTAATTATTGTTTTG
* * *
15269908 T--ATATATGAAG-AAAATAGCTAAAAAATAAAAAATAAATTGGTAATGTAAACAAGTGAGAAGA
65 TAAATATAT-AAGAAAAATAGCTAAAAATTAAAAAATAAATTGATAATGTAAACAAAT--GAA-A
* * * * ** * *
15269970 AATGTAAAATTAATATCATTTGGA-GGAAAATGAGTAAGAAGTGGTGTAACATATTAAGAAAAAA
126 AATATAAAATTAGTATCATTT-GATGTAAAATGAGTAAAAAGTATTGTAACACACTAA-AAAAAA
* *
15270034 TTATGA-AAGTTTTAAATATAATGAAAAGTAAGAACAAT-AAAA
189 TTATGACAA-TTTTAAACATAATGAAAAGTAAGAACAATCATAA
* * * * * * *
15270076 AAAGATATTATTATACCATAAATAATTATGTTGATAATGTAAAGTTTTAACTAATTATTATTTTT
1 AAATATATTATTATA-AATAAATAATTATGATGATAATGTAAAATTTTAATTAATTATTGTTTTG
* * * * * *
15270141 TAAATATACAATAAAAGTAACTAAAAGTTGAAGAAAATAAA-TAAGTAACT-TAAA-AAAGTGAG
65 TAAATATATAAGAAAAATAGCTAAAAATT-AA-AAAATAAATTGA-TAA-TGTAAACAAA-T--G
* * **
15270203 AAAAAAAATAAAATTAGTATAATTTGATGTAAAAT-AGGTAAAAAGTATCATAACACACTAAAAA
123 -AAAAATATAAAATTAGTATCATTTGATGTAAAATGA-GTAAAAAGTATTGTAACACACTAAAAA
* * * * * *
15270267 AAGTTATTAAAATTCTAAACATAATTAAAAGTAAGAATAATCATAA
186 AAATTATGACAATTTTAAACATAATGAAAAGTAAGAACAATCATAA
* * * * * * ** *
15270313 AAAGAAATTATTGTAATATAAATAATTAAGTTAATAACATAAAGTTTTAATTAATTA---TTTT-
1 AAATATATTATTATAA-ATAAATAATTATGATGATAATGTAAAATTTTAATTAATTATTGTTTTG
* * * * *
15270374 TAAATATAT-A-AAAAATAGTTAAAAATTAAAAAACATATT-AGCAATGTAAACAAGTGAGAAAA
65 TAAATATATAAGAAAAATAGCTAAAAATTAAAAAATAAATTGA-TAATGTAAACAAAT--GAAAA
* * * * * * * * *
15270436 ATATAAAATTAGTATCATTAGATATAAAATAAGTAAAAATTGTTATCATACACTAAAAAAGAGTT
127 ATATAAAATTAGTATCATTTGATGTAAAATGAGTAAAAAGTATTGTAACACACTAAAAAA-AATT
* * * * *
15270501 ATGACAATTTTAAAAATAATAAAAATTACGAATAATCATAA
191 ATGACAATTTTAAACATAATGAAAAGTAAGAACAATCATAA
* * * *
15270542 TAATATATTATT-TACAGTAAATAATTAT-ATTGTTAATTTAAAATTTTAATTAATTATTG-TTT
1 AAATATATTATTATA-AATAAATAATTATGA-TGATAATGTAAAATTTTAATTAATTATTGTTTT
* * * * * * * *
15270604 ATAAATATAT-A-AAAATTATCTAGAAATT--AAAA-AAA-TGGTAACGTAAGCAAGTAAGAACA
64 GTAAATATATAAGAAAAATAGCTAAAAATTAAAAAATAAATTGATAATGTAAACAA--ATGAA-A
* * * * ** * * *
15270663 AATTTTAAATTAATATCATTTGGTGTAATTTG-GATAAAAAGTGTAGTATCACA-TAAAAAAAAA
126 AATATAAAATTAGTATCATTTGATGTAAAATGAG-TAAAAAGTATTGTAACACACT-----AAAA
* * *
15270726 AAAGAGTTATGGCAATTTTAAATATTATGAAAAGTAA-AACCAATCATAA
185 AAA-A-TTATGACAATTTTAAACATAATGAAAAGTAAGAA-CAATCATAA
* * * *
15270775 GAATATATTATTCTAAAGTAAATAATTATGTTGACAATGTAAAATTTTAATTAATTATTGTTCTT
1 AAATATATTATTATAAA-TAAATAATTATGATGATAATGTAAAATTTTAATTAATTATTGTT-TT
* * * *
15270840 GTAAATATATAAGAAAAAT-GACTAAAAATT-AAAAATCAAATTAATAAAGTAAATAAGTGAGAA
64 GTAAATATATAAGAAAAATAG-CTAAAAATTAAAAAAT-AAATTGATAATGTAAACAAATGA-AA
** * * * ***
15270903 GTAACGTAAAATTAGTATTATTTGAAGTAAAATGGGTAAGAAA-TATCACAACACACTAAAAACA
126 --AATATAAAATTAGTATCATTTGATGTAAAATGAGTAA-AAAGTATTGTAACACACTAAAAA-A
* * * * *
15270967 AGTTATAACAATTTTAAACGTAATGAAATGTAAGAACATTCAT-A
187 AATTATGACAATTTTAAACATAATGAAAAGTAAGAACAATCATAA
* * * * * * * *
15271011 AAATTTATTTTTATAACGTAAATAATTATGACGACAATATAAAATTTTAATTAATTATTATTAT-
1 AAATATATTATTATAA-ATAAATAATTATGATGATAATGTAAAATTTTAATTAATTATTGTTTTG
* ** * * *
15271075 TATTATATATAAGGGAAATAGCTAGAAATTAAAAAATAAATTGGCGTTAAATGAGTAAAATTAGA
65 TA-AATATATAAGAAAAATAGCTAAAAATTAAAAAATAAATT---GAT-AAT--GT-AAA-CA-A
* * ** ** * * * *
15271140 ATCATTAGGTATAAAATTAGTATCATTTGACATAAAATAAGTAAGAAGTGTTGTAACACATTAAT
120 ATGA-AAAATATAAAATTAGTATCATTTGATGTAAAATGAGTAAAAAGTATTGTAACACACTAA-
* * * * * * *
15271205 AAAGAATTATGACAATTCTAAATATAA-CATAAAGTAAAAATAA-CCTGAA
183 AAAAAATTATGACAATTTTAAACATAATGA-AAAGTAAGAACAATCAT-AA
* * * * **
15271254 GAAGATATTATTGTAAAGTAAATAATTATGTTGATAAAATAAAATTTTAATTAATTATTGTTCTT
1 AAATATATTATTATAAA-TAAATAATTATGATGATAATGTAAAATTTTAATTAATTATTGTT-TT
* *
15271319 GTAAATATATAAGAAAAATAACTAAAAATTAAAAAGTAAATTGATAATGTAAACAAATGAAAAAT
64 GTAAATATATAAGAAAAATAGCTAAAAATTAAAAAATAAATTGATAATGTAAACAAATGAAAAAT
* * * **
15271384 GTAAAATTAGTATCATTTGGTGTTAAATGAGTAAAAAGTATTGTAACACACACTAAAAAAGAACC
129 ATAAAATTAGTATCATTTGATGTAAAATGAGTAAAAAGTATTGT-A-ACACACTAAAAAA-AATT
* * * **
15271449 ATAACAATTCTAAACATAATGAAAAATAAGAACAATTTTAA
191 ATGACAATTTTAAACATAATGAAAAGTAAGAACAATCATAA
* *
15271490 AAATATAGTATTATAATATAAATAATTATGATGATAATGTAAAATTTTAATTAACTATT-TTTTG
1 AAATATATTATTATAA-ATAAATAATTATGATGATAATGTAAAATTTTAATTAATTATTGTTTTG
* * * *
15271554 TATATATA-AAG-AAAATAGCTAAAAATTAAAAAATAAATTGGTAATATAAACAAGTGAGAAAAA
65 TAAATATATAAGAAAAATAGCTAAAAATTAAAAAATAAATTGATAATGTAAACAAAT--GAAAAA
* * * * * * * *** *
15271617 TGTAAAATTAATATCATCTAGA-GTAAAATGAGTAAGAAGTGTCGTAATATTTTAAGAAAAAGTT
128 TATAAAATTAGTATCAT-TTGATGTAAAATGAGTAAAAAGTATTGTAACACACTAA-AAAAAATT
** * * * * *
15271681 ATGACAATTTTAAATGTAATGGAAAGTAATAACAAACGTGAG
191 ATGACAATTTTAAACATAATGAAAAGTAAGAACAATCAT-AA
* * * ** * *
15271723 AAA-ATATTATTATACCATAAATAATTATGTTGATAATGTAAAGTTTTAACCAATTATTATTTTT
1 AAATATATTATTATA-AATAAATAATTATGATGATAATGTAAAATTTTAATTAATTATTGTTTTG
* * **
15271787 TAAATATATAAGCAAAATAGCTAAAAATTGAAAAAATAAA-TAAGTAACATAAA-AAATTAAGAA
65 TAAATATATAAGAAAAATAGCTAAAAATT-AAAAAATAAATTGA-TAATGTAAACAAA-T--GAA
* * * * * ** *
15271850 AAACATAAAATTATTATAATTTGACGTAAAAT-AGGTAAAAAATATCATAACACACTAAAAAAAG
125 AAATATAAAATTAGTATCATTTGATGTAAAATGA-GTAAAAAGTATTGTAACACACTAAAAAAAA
* * * *
15271914 TTATGACAATTCTAAACATAATTAAAAGTAAG-ATAATCTTAA
189 TTATGACAATTTTAAACATAATGAAAAGTAAGAACAATCATAA
* * * * * *
15271956 AAAGAAATTATTGTAATATAAATAATTAAG-TTATTAATGTAAAATTTTAATTAATTA---TTCT
1 AAATATATTATTATAA-ATAAATAATTATGATGA-TAATGTAAAATTTTAATTAATTATTGTTTT
* * * * ** *
15272017 -TAAATATATAACAAAAAAAGTTAAAAATTAAAAAATATATT-ACCCATGTAAACAAGTGAGAAA
64 GTAAATATATAAGAAAAATAGCTAAAAATTAAAAAATAAATTGA-TAATGTAAACAAAT--G-AA
* *** * * * * * ** *
15272080 AAATAAAAAATTAGTATCATTTGGCATAAAATAAGTAAAAATTGTTATAATATGCTAAAAAAAGT
125 AAATATAAAATTAGTATCATTTGATGTAAAATGAGTAAAAAGTATTGTAACACACTAAAAAAAAT
* ** * * *
15272145 TATGATAATTTTAAATGTAATAAAAATTACGAACAATCATAA
190 TATGACAATTTTAAACATAATGAAAAGTAAGAACAATCATAA
* * * * * *
15272187 TAGTATATTATT-TAATTTAAATAATTAT-ATTATCAATTTAAAA-TTTAATTAATTATTATTTT
1 AAATATATTATTATAA-ATAAATAATTATGATGAT-AATGTAAAATTTTAATTAATTATTGTTTT
* * * * ** *
15272249 ATAGATATCTAA-AAAAA-AGCTAAAAATT--AAAA-AAATTGGTAACCTAAACAAGCAAGAACA
64 GTAAATATATAAGAAAAATAGCTAAAAATTAAAAAATAAATTGATAATGTAAACAA--ATGAA-A
* * * * * * * *
15272309 AACATAAAATTAATATCATTTGGTGT-ATATTAGGTAAAAAGTGTAGTAACACACAAAAAAATAA
126 AATATAAAATTAGTATCATTTGATGTAAAATGA-GTAAAAAGTATTGTAACACACTAAAAAA-AA
* ** * * * *
15272373 TTATGGCAATTTTAAGTATTATGAAAAGTAAAAACATTCCTAA
189 TTATGACAATTTTAAACATAATGAAAAGTAAGAACAATCATAA
* * * * * *
15272416 GAATAAATTATTGTAAAGTAAATAATTATG-TTAGCAGTGTAAAATTTTAATTAATTATTGTTCT
1 AAATATATTATTATAAA-TAAATAATTATGATGA-TAATGTAAAATTTTAATTAATTATTGTT-T
* ** *
15272480 TGTAAATATATAAGAAAAAT-GACCAAAAATT--AAAATCAAATTGATAAAATAAACAAGTGAGA
63 TGTAAATATATAAGAAAAATAG-CTAAAAATTAAAAAAT-AAATTGATAATGTAAACAAATGA-A
* * * ** *
15272542 AGTAATATAAAATTAGCATCATTTGAAGTAAAATG-GTAAGAAA-TGTCATAACACAGTAAAAAC
125 A--AATATAAAATTAGTATCATTTGATGTAAAATGAGTAA-AAAGTATTGTAACACACTAAAAA-
** * * * * *
15272605 AAGCTATAATAATTTTAAACGTAATGAAAAATAAGAAAAATCATAA
186 AAATTATGACAATTTTAAACATAATGAAAAGTAAGAACAATCATAA
* * *
15272651 AACT-TATTTTTATAACATAAATAATTATGATGAAAATGTAAAATTTTAATTAATTATTGTTATT
1 AAATATATTATTATAA-ATAAATAATTATGATGATAATGTAAAATTTTAATTAATTATTGTT-TT
15272715 GT
64 GT
15272717 GTGTGTGTGT
Statistics
Matches: 2747, Mismatches: 619, Indels: 403
0.73 0.16 0.11
Matches are distributed among these distances:
223 4 0.00
224 32 0.01
225 10 0.00
226 6 0.00
227 59 0.02
228 184 0.07
229 201 0.07
230 240 0.09
231 149 0.05
232 277 0.10
233 201 0.07
234 303 0.11
235 256 0.09
236 316 0.12
237 206 0.07
238 63 0.02
239 8 0.00
240 6 0.00
241 13 0.00
242 112 0.04
243 61 0.02
244 38 0.01
245 2 0.00
ACGTcount: A:0.52, C:0.06, G:0.10, T:0.32
Consensus pattern (231 bp):
AAATATATTATTATAAATAAATAATTATGATGATAATGTAAAATTTTAATTAATTATTGTTTTGT
AAATATATAAGAAAAATAGCTAAAAATTAAAAAATAAATTGATAATGTAAACAAATGAAAAATAT
AAAATTAGTATCATTTGATGTAAAATGAGTAAAAAGTATTGTAACACACTAAAAAAAATTATGAC
AATTTTAAACATAATGAAAAGTAAGAACAATCATAA
Found at i:15271905 original size:468 final size:459
Alignment explanation
Indices: 15268918--15272716 Score: 1648
Period size: 464 Copynumber: 8.1 Consensus size: 459
15268908 CCCTACAAAT
* ** ** * *
15268918 ATATTATTGTAATA-TAAATAATTATGTTGGCAACATAAAATTTTAATTAATTATTATT-TTTTA
1 ATATTATTATAA-AGTAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTTCTTGTA
* * * * *
15268981 CATATATAAGAAAAATAGTTAAAAATTAAAAAATAAATAAGTAACGTAAAACAACATGAAAAACA
65 AATATATAAGAAAAATAGCTAAAAATTAAAAAATAAATAAGTAA-ATAAAA-AATA-GAAAAACG
* * * * * *
15269046 TAAAATGAGTATTATTTGGTA-TAAAATAGGTAAAAAATGTTACA-ACACACACTAAGAAATAGC
127 TAAAATTAGTATAATTT-GAAGTAAAAT-GGTAAAAAAT-AT-CATA-ACACACTAA-AAAAAGT
* * * * * * * * ** *
15269109 TATTATAACTCTAAACGTATTTAAAAATAAGAATAATCATAAAAA-A-ATTATTGTAATATAAAT
186 TATAACAATTCTAAACATAATGAAAAGTAAGAACAATTTTAAAAATATATTATTATAATATAAAT
* * ** * * * *
15269172 AATTAAGTTG-TCAACATAAAAATTTAATTAATTACTTTTTTA-A-ACATATA-AAAATAG-TTA
251 AATTATGATGAT-AATGTAAAATTTTAATTAATTA-TTTTTTATATATATAAAGAAAATAGCTAA
* * ** * * * * **
15269232 AAATTAAAAAAT--ATTGTTAATGTAATTAAGTGAAAAAAATGTGAAATTAGTATTATTTAGCGC
314 AAATTAAAAAATAAATTGGTAATATAAACAAGTGAGAAAAATATAAAATTAGTATCA-TTAG-AT
* * * ** * * * *
15269295 AAAATGCA-TATA-AATTATCATAATACATTAAAAAGAGTTACGACAATTTTAAACGA-AATGAA
377 AAAAT-AAGTA-AGAAGTGTTGTAATATATTAAAAAAAGTTATGACAATTTTAAA-TATAATGAA
* * * *
15269357 AAGTAAAA-ACAATATAACAAC
439 AAGTAAAACA-AACATGAGAAA
* *
15269378 ATATTATTGTAACATAAA-TAAATAATTATATTGATAACGTAAAATTTTAATTAATTATTGTT-T
1 ATATTA-T-T---ATAAAGTAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTTCT
* * * * *
15269441 TATAAATATCTAATG-AAAATAGCTAAAAATTAAAAAATAAATTAGTAACATAAACAATGAAAAC
61 TGTAAATATATAA-GAAAAATAGCTAAAAATTAAAAAATAAATAAGTAA-ATAAAAAAT-AGAA-
** * * * * * * ** *
15269505 AAACACAAAATTAATATCATTTGGTA-TAAAATTGATAAGAAGTATTGTAACACATTAATAAAGA
122 AAACGTAAAATTAGTATAATTT-GAAGTAAAA-TGGTAAAAAATATCATAACACACTAA-AAA-A
* * * * * * * * * *
15269569 A-TTATGACAATTTTAAACATAA-CACAAAGCAAAAACAA---CAATAAGATATTATTGTAAAAT
183 AGTTATAACAATTCTAAACATAATGA-AAAGTAAGAACAATTTTAAAAATATATTATTATAATAT
* ** * ** *
15269629 AAATAATTATG-TGGACAAAATAAATTTTTAATTAATTATTGGTCCTATAAATATATAAGAAAAA
247 AAATAATTATGAT-GATAATGTAAAATTTTAATTAATTATT--TTTTATATATATA-AAG-AAAA
* * * * * * *
15269693 TAACTAAGAATTAAAAAA-AAATTGATAATGTAAACAAAT--GAAAATTGTAAAATTAGTATCAT
307 TAGCTAAAAATTAAAAAATAAATTGGTAATATAAACAAGTGAGAAAAATATAAAATTAGTATCAT
* * * * * ** * * ** * * *
15269755 TTGATGTTAAATGAGTAAAAAGTATCATAATGCACACTAAAAAAGAACTATGATAATTCTAAACA
372 TAGA--TAAAATAAGTAAGAAGTGTTGTAAT--ATATTAAAAAA-AGTTATGACAATTTTAAATA
* * * *
15269820 TAATAAAAAATAAGAGC-AA-TTGTA-AATA
432 TAATGAAAAGTAA-AACAAACATG-AGAA-A
** * * * *
15269848 TATAGGATTATAATA-TAAATAATTATG--AAGAATGTAAAATTTTAATTAACTATT-TTTTTGT
1 -ATATTATTATAA-AGTAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTTCTTGT
* ** * *
15269909 --ATATATGAAG-AAAATAGCTAAAAAATAAAAAATAAATTGGTAATGTAAACAAGTGAGAAGAA
64 AAATATAT-AAGAAAAATAGCTAAAAATTAAAAAATAAATAAGTAA-ATAAA-AAAT-AGAA-AA
* * * * * * * * * * * *
15269971 ATGTAAAATTAATATCATTTGGAGGAAAATGAGTAAGAAGTGGT-GTAACATATTAAGAAAAAAT
124 ACGTAAAATTAGTATAATTTGAAGTAAAATG-GTAAAAAAT-ATCATAACACACTAA-AAAAAGT
* * * ** * **
15270035 TATGAA-AGTTTTAAATATAATGAAAAGTAAGAACAA-TAAAAAAAGATATTATTATACCATAAA
186 TAT-AACAATTCTAAACATAATGAAAAGTAAGAACAATTTTAAAAATATATTATTATAATATAAA
* * * * * * *
15270098 TAATTATGTTGATAATGTAAAGTTTTAACTAATTATTATTTTTTAAATATACAATAAAAGTAACT
250 TAATTATGATGATAATGTAAAATTTTAATTAATTATT-TTTTATATATATA-AAGAAAA-TAGCT
* ** * * *
15270163 AAAAGTTGAAGAAAATAAATAAGTAACT-TAAAAAAGTGAGAAAAAAAATAAAATTAGTATAATT
312 AAAAATT-AA-AAAATAAATTGGTAA-TATAAACAAGTGAG-AAAAATATAAAATTAGTATCATT
* * * * ** * * * * * * *
15270227 TGATGTAAAATAGGTAAAAAGTATCATAACACACTAAAAAAAGTTATTAAAATTCTAAACATAAT
373 AGA--TAAAATAAGTAAGAAGTGTTGTAATATATTAAAAAAAGTTATGACAATTTTAAATATAAT
* * * *
15270292 TAAAAGTAAGAATAATCAT-AAAAA
436 GAAAAGTAA-AACAAACATGAGAAA
* * * * ** *
15270316 GAAATTATTGTAATA-TAAATAATTAAGTTAATAACATAAAGTTTTAATTAATTA---TT-TT-T
1 -ATATTATTATAA-AGTAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTTCTTGT
* * * * * * * *
15270375 AAATATAT-A-AAAAATAGTTAAAAATTAAAAAACATATTAGCAATGTAAACAAGTGAGAAAAAT
64 AAATATATAAGAAAAATAGCTAAAAATTAAAAAATAAATAAGTAA-ATAAA-AAAT-AGAAAAAC
* * * * * * * * *
15270438 ATAAAATTAGTATCATTAGATA-TAAAATAAGTAAAAATTGTTATCATACACTAAAAAAGAGTTA
126 GTAAAATTAGTATAATTTGA-AGTAAAAT-GGTAAAAAATATCATAACACACTAAAAAA-AGTTA
* * * * * * * ** * *
15270502 TGACAATTTTAAAAATAATAAAAATTACGAATAATCATAATAATATATTATT-TACA-GTAAATA
188 TAACAATTCTAAACATAATGAAAAGTAAGAACAATTTTAAAAATATATTATTATA-ATATAAATA
* * * * * * *
15270565 ATTAT-ATTGTTAATTTAAAATTTTAATTAATTATTGTTTATAAATATATAA-AAATTATCTAGA
252 ATTATGA-TGATAATGTAAAATTTTAATTAATTATTTTTTATATATATA-AAGAAAATAGCTAAA
** * * * * * * * *
15270628 AATT--AAAA-AAA-TGGTAACGTAAGCAAGTAAGAACAAATTTTAAATTAATATCATTTGGTGT
315 AATTAAAAAATAAATTGGTAATATAAACAAGTGAGAA-AAATATAAAATTAGTATCATTAGAT-A
* ** * * * ** * *
15270689 AATTTGGATAAAAAGTGTAGTATCACATAAAAAAAAAAAAGAGTTATGGCAATTTTAAATATTAT
378 AAATAAG-TAAGAAGTGT--TGT-A-AT-ATATTAAAAAA-AGTTATGACAATTTTAAATATAAT
* * *
15270754 GAAAAGTAAAACCAATCATAAGAAT
436 GAAAAGTAAAA-CAAACATGAGAAA
* *
15270779 ATATTATTCTAAAGTAAATAATTATGTTGACAATGTAAAATTTTAATTAATTATTGTTCTTGTAA
1 ATATTATTATAAAGTAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTTCTTGTAA
* *
15270844 ATATATAAGAAAAAT-GACTAAAAATT-AAAAATCAAATTAA-TAAAGTAAATAAGTGAGAAGTA
66 ATATATAAGAAAAATAG-CTAAAAATTAAAAAAT-AAA-TAAGTAAA-TAAA-AAAT-AGAA-AA
* * *
15270906 ACGTAAAATTAGTATTATTTGAAGTAAAATGGGTAAGAAATATCACAACACACTAAAAACAAGTT
124 ACGTAAAATTAGTATAATTTGAAGTAAAAT-GGTAAAAAATATCATAACACACTAAAAA-AAGTT
* * * * * * **
15270971 ATAACAATTTTAAACGTAATGAAATGTAAGAAC-A-TTCATAAAATTTATTTTTATAACGTAAAT
187 ATAACAATTCTAAACATAATGAAAAGTAAGAACAATTTTA-AAAATATATTATTATAATATAAAT
* * * * *
15271034 AATTATGACGACAATATAAAATTTTAATTAATTATTATTATTATTATATATAAGGGAAATAGCTA
251 AATTATGATGATAATGTAAAATTTTAATTAATTATT-TT-TTA-TATATATAAAGAAAATAGCTA
* * *
15271099 GAAATTAAAAAATAAATTGGCGTTAA-ATGAGTAA-AA-TTAGAATCATTAGGTATAAAATTAGT
313 AAAATTAAAAAATAAATT-G-G-TAATAT-A--AACAAGTGAGAA--A--A-ATATAAAATTAGT
* * * *
15271161 ATCATTTGACATAAAATAAGTAAGAAGTGTTGTAACACATTAATAAAGAA-TTATGACAATTCTA
367 ATCA-TT-AGATAAAATAAGTAAGAAGTGTTGTAATATATTAA-AAA-AAGTTATGACAATTTTA
* * *
15271225 AATATAA-CATAAAGTAAAA-ATAACCTGAAGAAG
428 AATATAATGA-AAAGTAAAACA-AACATG-AGAAA
* **
15271258 ATATTATTGTAAAGTAAATAATTATGTTGATAAAATAAAATTTTAATTAATTATTGTTCTTGTAA
1 ATATTATTATAAAGTAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTTCTTGTAA
* * * * *
15271323 ATATATAAGAAAAATAACTAAAAATTAAAAAGTAAAT-TGATAATGTAAACAAAT-GAAAAATGT
66 ATATATAAGAAAAATAGCTAAAAATTAAAAAATAAATAAG-TAA-ATAAA-AAATAGAAAAACGT
* ** * * ** ***
15271386 AAAATTAGTATCATTTGGTGTTAAATGAGTAAAAAGTATTGTAACACACACTAAAAAAGAACCAT
128 AAAATTAGTATAATTTGAAGTAAAATG-GTAAAAAATATCAT-A-ACACACTAAAAAA-AGTTAT
* *
15271451 AACAATTCTAAACATAATGAAAAATAAGAACAATTTTAAAAATATAGTATTATAATATAAATAAT
189 AACAATTCTAAACATAATGAAAAGTAAGAACAATTTTAAAAATATATTATTATAATATAAATAAT
* *
15271516 TATGATGATAATGTAAAATTTTAATTAACTATTTTTTGTATATATAAAGAAAATAGCTAAAAATT
254 TATGATGATAATGTAAAATTTTAATTAATTATTTTTTATATATATAAAGAAAATAGCTAAAAATT
* *
15271581 AAAAAATAAATTGGTAATATAAACAAGTGAGAAAAATGTAAAATTAATATCATCTAGAGTAAAAT
319 AAAAAATAAATTGGTAATATAAACAAGTGAGAAAAATATAAAATTAGTATCAT-TAGA-TAAAAT
* * * * *
15271646 GAGTAAGAAGTGTCGTAATATTTTAAGAAAAAGTTATGACAATTTTAAATGTAATGGAAAGTAAT
382 AAGTAAGAAGTGTTGTAATATATTAA-AAAAAGTTATGACAATTTTAAATATAATGAAAAGTAA-
*
15271711 AACAAACGTGAGAAA
445 AACAAACATGAGAAA
* * ** * *
15271726 ATATTATTATACCA-TAAATAATTATGTTGATAATGTAAAGTTTTAACCAATTATTATT-TTTTA
1 ATATTATTATA-AAGTAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTTCTTGTA
*
15271789 AATATATAAGCAAAATAGCTAAAAATTGAAAAAATAAATAAGTAACATAAAAAATTAAGAAAAAC
65 AATATATAAGAAAAATAGCTAAAAATT-AAAAAATAAATAAGTAA-ATAAAAAA-T-AGAAAAAC
* * * *
15271854 ATAAAATTATTATAATTTGACGTAAAATAGGTAAAAAATATCATAACACACTAAAAAAAGTTATG
126 GTAAAATTAGTATAATTTGAAGTAAAAT-GGTAAAAAATATCATAACACACTAAAAAAAGTTATA
* * * * * *
15271919 ACAATTCTAAACATAATTAAAAGTAAG-ATAATCTTAAAAAGAAATTATTGTAATATAAATAATT
190 ACAATTCTAAACATAATGAAAAGTAAGAACAATTTTAAAAATATATTATTATAATATAAATAATT
* * * * * *
15271983 AAG-TTATTAATGTAAAATTTTAATTAATTA-TTCTTAAATATATAACA-AAAAAAGTTAAAAAT
255 ATGATGA-TAATGTAAAATTTTAATTAATTATTTTTTATATATATAA-AGAAAATAGCTAAAAAT
* **** * * *
15272045 TAAAAAATATATTACCCATGTAAACAAGTGAGAAAAAATAAAAAATTAGTATCATTTGGCATAAA
318 TAAAAAATAAATTGGTAATATAAACAAGTGAG-AAAAATATAAAATTAGTATCA-TTAG-ATAAA
* * * ** * * * *
15272110 ATAAGTAAAAATTGTTATAATATGCTAAAAAAAGTTATGATAATTTTAAATGTAATAAAAATTAC
380 ATAAGTAAGAAGTGTTGTAATATATTAAAAAAAGTTATGACAATTTTAAATATAATGAAAAGTA-
* * * * **
15272175 GAACAATCATAATAGT
444 AAACAAACATGAGAAA
** * * * *
15272191 ATATTATT-TAATTTAAATAATTATATT-ATCAATTTAAAA-TTTAATTAATTATTATT-TTATA
1 ATATTATTATAAAGTAAATAATTATGTTGAT-AATGTAAAATTTTAATTAATTATTGTTCTTGTA
* * ** *
15272252 GATATCTAA-AAAAA-AGCTAAAAATT--AAAA-AAATTGGTAACCTAAACAAGCA-AGAACAAA
65 AATATATAAGAAAAATAGCTAAAAATTAAAAAATAAATAAGTAA-ATAAA-AA--ATAGAA-AAA
* * * ** * * * * * *
15272311 CATAAAATTAATATCATTTGGTGTATATTAGGTAAAAAGTGT-AGTAACACACAAAAAAATAATT
125 CGTAAAATTAGTATAATTTGAAGTAAAAT-GGTAAAAAATATCA-TAACACACTAAAAAA-AGTT
** * ** * * * * * *
15272375 ATGGCAATTTTAAGTATTATGAAAAGTAAAAAC-ATTCCTAAGAATAAATTATTGTAA-AGTAAA
187 ATAACAATTCTAAACATAATGAAAAGTAAGAACAATT-TTAAAAATATATTATTATAATA-TAAA
* * * * *
15272438 TAATTATG-TTAGCAGTGTAAAATTTTAATTAATTATTGTTCTTGTAAATATATAAGAAAA-ATG
250 TAATTATGATGA-TAATGTAAAATTTTAATTAATTATT-TT-TTATATATATA-AAGAAAATA-G
* * * * *
15272501 ACCAAAAATT--AAAATCAAATTGATAAAATAAACAAGTGAGAAGTAATATAAAATTAGCATCAT
310 -CTAAAAATTAAAAAAT-AAATTGGTAATATAAACAAGTGAGAA-AAATATAAAATTAGTATCAT
* * * ** * * * * * * **
15272564 TTGAAGTAAAAT-GGTAAGAAATGTCATAACACAGTAAAAACAAGCTATAATAATTTTAAACGTA
372 TAG-A-TAAAATAAGTAAGAAGTGTTGTAATATATTAAAAA-AAGTTATGACAATTTTAAATATA
*
15272628 ATGAAAAATAAGAA-AAATCAT-A-AAA
434 ATGAAAAGTAA-AACAAA-CATGAGAAA
* * * * *
15272653 CTTATTTTTATAACA-TAAATAATTATGATGAAAATGTAAAATTTTAATTAATTATTGTTATTGT
1 -ATATTATTATAA-AGTAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTTCTTGT
15272717 GTGTGTGTGT
Statistics
Matches: 2604, Mismatches: 540, Indels: 384
0.74 0.15 0.11
Matches are distributed among these distances:
454 1 0.00
455 7 0.00
456 40 0.02
457 21 0.01
458 63 0.02
459 34 0.01
460 65 0.02
461 67 0.03
462 128 0.05
463 139 0.05
464 355 0.14
465 290 0.11
466 226 0.09
467 136 0.05
468 248 0.10
469 99 0.04
470 203 0.08
471 57 0.02
472 6 0.00
473 29 0.01
474 3 0.00
475 6 0.00
476 74 0.03
477 9 0.00
478 50 0.02
479 187 0.07
480 22 0.01
481 6 0.00
482 3 0.00
483 1 0.00
484 22 0.01
485 6 0.00
486 1 0.00
ACGTcount: A:0.52, C:0.06, G:0.10, T:0.32
Consensus pattern (459 bp):
ATATTATTATAAAGTAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTTCTTGTAA
ATATATAAGAAAAATAGCTAAAAATTAAAAAATAAATAAGTAAATAAAAAATAGAAAAACGTAAA
ATTAGTATAATTTGAAGTAAAATGGTAAAAAATATCATAACACACTAAAAAAAGTTATAACAATT
CTAAACATAATGAAAAGTAAGAACAATTTTAAAAATATATTATTATAATATAAATAATTATGATG
ATAATGTAAAATTTTAATTAATTATTTTTTATATATATAAAGAAAATAGCTAAAAATTAAAAAAT
AAATTGGTAATATAAACAAGTGAGAAAAATATAAAATTAGTATCATTAGATAAAATAAGTAAGAA
GTGTTGTAATATATTAAAAAAAGTTATGACAATTTTAAATATAATGAAAAGTAAAACAAACATGA
GAAA
Found at i:15272735 original size:2 final size:2
Alignment explanation
Indices: 15272730--15272764 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
15272720 TGTGTGTGTG
15272730 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15272765 TGGGCAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:15273468 original size:20 final size:19
Alignment explanation
Indices: 15273424--15273461 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
15273414 TATTATTTTT
*
15273424 GTAAATATTAAGAAAAATA
1 GTAAAAATTAAGAAAAATA
15273443 GTTAAAAATTAA-AAAAATA
1 G-TAAAAATTAAGAAAAATA
15273462 AAGTAAACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (19 bp):
GTAAAAATTAAGAAAAATA
Found at i:15278286 original size:143 final size:143
Alignment explanation
Indices: 15277881--15278287 Score: 372
Period size: 143 Copynumber: 2.8 Consensus size: 143
15277871 CCTTGATTGT
* * * * ** ** **
15277881 ACCTCAGAAAGG-GTAAAATTACAAAAATGCCTTTAAGGGTATTTTTGTAATCTCAACCTTTTCA
1 ACCTCA-AAAGGTATAAAATTACCAAAATACCTTTTAGGGTATTTTCATAAT-TTGACCTTCACA
* * ** * * * * *
15277945 AGATCAAATTTTTATGAAAGACTTTAGATCATATTTTGATATCATTCCATGATTTTTTATATATT
64 AGGTCAGATTTTCGTGAAAAACTTTAGATCATATTTTTATATTATTTCATGATTTTTGATATATT
15278010 AAAAACCTTAATCAC
129 AAAAACCTTAATCAC
** *
15278025 ACCTTGAAAGGTATAAAATTACCAAAATACCTTTTAGGGTATTTTCATAATTTGACCTTCATAAG
1 ACCTCAAAAGGTATAAAATTACCAAAATACCTTTTAGGGTATTTTCATAATTTGACCTTCACAAG
* * * * * ** * *
15278090 GTCAGATTTTCGTGAAAAACTTCAAATAATGTTTTTATATTACTTCAAAATTTTTGGTATATTGA
66 GTCAGATTTTCGTGAAAAACTTTAGATCATATTTTTATATTATTTCATGATTTTTGATATATTAA
* *
15278155 AAACCTTGATCGC
131 AAACCTTAATCAC
* * * * *
15278168 ACCTCAAAAGGTATGAAATTATCAAAATGACC-TTTAGGGGTATTTTCGTAATTTGACCTTTACG
1 ACCTCAAAAGGTATAAAATTACCAAAAT-ACCTTTTA-GGGTATTTTCATAATTTGACCTTCACA
* * *
15278232 AGGT-TGATTTT-TTGTAAAAATTTTAGATCATATTTTTATATTATTTCATGATTTTT
64 AGGTCAGATTTTCGTG-AAAAACTTTAGATCATATTTTTATATTATTTCATGATTTTT
15278288 AGTGCATTAA
Statistics
Matches: 208, Mismatches: 51, Indels: 9
0.78 0.19 0.03
Matches are distributed among these distances:
142 2 0.01
143 139 0.67
144 67 0.32
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.40
Consensus pattern (143 bp):
ACCTCAAAAGGTATAAAATTACCAAAATACCTTTTAGGGTATTTTCATAATTTGACCTTCACAAG
GTCAGATTTTCGTGAAAAACTTTAGATCATATTTTTATATTATTTCATGATTTTTGATATATTAA
AAACCTTAATCAC
Found at i:15279530 original size:36 final size:36
Alignment explanation
Indices: 15279472--15279540 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 36
15279462 TTGAGTTAAA
*
15279472 TATGTAAGTATACATTAATGGAGAGAGAATGAGAAG
1 TATGTAAGTATACATTAATGGAGAAAGAATGAGAAG
* * *
15279508 TATGTAAGTTTATATTAGTGGAGAAAGAATGAG
1 TATGTAAGTATACATTAATGGAGAAAGAATGAG
15279541 GAAAGTAAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.42, C:0.01, G:0.28, T:0.29
Consensus pattern (36 bp):
TATGTAAGTATACATTAATGGAGAAAGAATGAGAAG
Found at i:15280714 original size:25 final size:26
Alignment explanation
Indices: 15280686--15280734 Score: 75
Period size: 25 Copynumber: 1.9 Consensus size: 26
15280676 TAAAAAAATA
15280686 AAATAAAAATCAT-TA-AATAAAAACC
1 AAATAAAAAT-ATATATAATAAAAACC
15280711 AAATAAAAATATATATAATAAAAA
1 AAATAAAAATATATATAATAAAAA
15280735 ATAAAAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 2 0.09
25 12 0.55
26 8 0.36
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.22
Consensus pattern (26 bp):
AAATAAAAATATATATAATAAAAACC
Found at i:15282579 original size:25 final size:24
Alignment explanation
Indices: 15282546--15282607 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 24
15282536 AGATTTTTTT
15282546 AAAATAATAAAATTAAAAATA-ATG
1 AAAATAATAAAATTAAAAATATA-G
*
15282570 ATAAATAATAAATAATAAAAATATAG
1 A-AAATAATAAA-ATTAAAAATATAG
15282596 AAAATAA-AAAAT
1 AAAATAATAAAAT
15282608 ATAATAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
23 1 0.03
24 4 0.12
25 16 0.48
26 11 0.33
27 1 0.03
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (24 bp):
AAAATAATAAAATTAAAAATATAG
Found at i:15282580 original size:7 final size:7
Alignment explanation
Indices: 15282547--15282620 Score: 50
Period size: 7 Copynumber: 10.9 Consensus size: 7
15282537 GATTTTTTTA
15282547 AAATAAT
1 AAATAAT
*
15282554 AAA-ATT
1 AAATAAT
15282560 AAA-AAT
1 AAATAAT
*
15282566 -AATGAT
1 AAATAAT
15282572 AAATAAT
1 AAATAAT
15282579 AAATAAT
1 AAATAAT
15282586 AAA-AAT
1 AAATAAT
*
15282592 ATAGAAAAT
1 A-A-ATAAT
*
15282601 AAAAAAT
1 AAATAAT
15282608 ATAATAA-
1 A-AATAAT
15282615 AAATAA
1 AAATAA
15282621 AATTTAGAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 13
0.76 0.07 0.18
Matches are distributed among these distances:
5 2 0.04
6 18 0.32
7 26 0.46
8 6 0.11
9 4 0.07
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (7 bp):
AAATAAT
Found at i:15282608 original size:25 final size:25
Alignment explanation
Indices: 15282546--15282620 Score: 75
Period size: 26 Copynumber: 2.9 Consensus size: 25
15282536 AGATTTTTTT
15282546 AAAATAATAAAAT--TAAAAATAATG
1 AAAATAA-AAAATAATAAAAATAATG
*
15282570 ATAAATAATAAATAATAAAAAT-ATAG
1 A-AAATAAAAAATAATAAAAATAAT-G
15282596 AAAATAAAAAATATAATAAAAATAA
1 AAAAT-AAAAA-ATAATAAAAATAA
15282621 AATTTAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
24 5 0.12
25 12 0.29
26 13 0.31
27 11 0.26
28 1 0.02
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (25 bp):
AAAATAAAAAATAATAAAAATAATG
Found at i:15283169 original size:16 final size:17
Alignment explanation
Indices: 15283143--15283196 Score: 76
Period size: 16 Copynumber: 3.2 Consensus size: 17
15283133 GAGAAATTAT
*
15283143 TAAATATTAAAAGATAA
1 TAAATAATAAAAGATAA
15283160 -AAATAATAAAAGAATAA
1 TAAATAATAAAAG-ATAA
15283177 TAAATAATAAAA-ATAA
1 TAAATAATAAAAGATAA
15283193 TAAA
1 TAAA
15283197 ATTTTAATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
16 19 0.56
17 4 0.12
18 11 0.32
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (17 bp):
TAAATAATAAAAGATAA
Found at i:15283170 original size:9 final size:9
Alignment explanation
Indices: 15283156--15283197 Score: 59
Period size: 9 Copynumber: 4.7 Consensus size: 9
15283146 ATATTAAAAG
15283156 ATAAAAATA
1 ATAAAAATA
*
15283165 AT-AAAAGA
1 ATAAAAATA
15283173 ATAATAAATA
1 ATAA-AAATA
15283183 ATAAAAATA
1 ATAAAAATA
15283192 ATAAAA
1 ATAAAA
15283198 TTTTAATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
8 7 0.24
9 14 0.48
10 8 0.28
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.21
Consensus pattern (9 bp):
ATAAAAATA
Found at i:15283204 original size:27 final size:26
Alignment explanation
Indices: 15283145--15283225 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 26
15283135 GAAATTATTA
* *
15283145 AATATTAAAAGATAAAAATAATAAAAG
1 AATAATAAAA-ATAAAAATAATAAAAT
15283172 AATAATAAATAATAAAAATAATAAAAT
1 AATAATAAA-AATAAAAATAATAAAAT
** *
15283199 TTTAATAAAAA-GAAAATATATAAAAT
1 AATAATAAAAATAAAAATA-ATAAAAT
15283225 A
1 A
15283226 TAAAAATTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
25 6 0.13
26 9 0.20
27 30 0.65
28 1 0.02
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (26 bp):
AATAATAAAAATAAAAATAATAAAAT
Found at i:15290061 original size:34 final size:34
Alignment explanation
Indices: 15290009--15290157 Score: 138
Period size: 34 Copynumber: 4.4 Consensus size: 34
15289999 TCACTGTAAT
* * * * *
15290009 TTTTGATTTGCGACTTAGTCCTAGTCATTTTGTA
1 TTTTGACTTGTGATTTAGTCCTAGTCACTTTATA
* * * * * *
15290043 TTTTGACTTGTGGTTTAGTCTTAGTTAATTAATT
1 TTTTGACTTGTGATTTAGTCCTAGTCACTTTATA
* *
15290077 TTTTGACTTGTAATTTAGTCCTAGTCACCTTATA
1 TTTTGACTTGTGATTTAGTCCTAGTCACTTTATA
* * *
15290111 TTTTGACTAGTGATTCAGTCCCAGTCACTTTCA-A
1 TTTTGACTTGTGATTTAGTCCTAGTCACTTT-ATA
15290145 TTTTGACTTGTGA
1 TTTTGACTTGTGA
15290158 CTTAATCCCA
Statistics
Matches: 90, Mismatches: 24, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
34 89 0.99
35 1 0.01
ACGTcount: A:0.21, C:0.15, G:0.16, T:0.48
Consensus pattern (34 bp):
TTTTGACTTGTGATTTAGTCCTAGTCACTTTATA
Found at i:15290248 original size:34 final size:34
Alignment explanation
Indices: 15290218--15290282 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 34
15290208 TAATTTTTTG
15290218 ACTTGCGATTCAATCTCGATCATTTCATTTTTCA
1 ACTTGCGATTCAATCTCGATCATTTCATTTTTCA
* * * * *
15290252 ACTTGTGATTTAGTCTCGGTTATTTCATTTT
1 ACTTGCGATTCAATCTCGATCATTTCATTTT
15290283 CAAACTTTGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 26 1.00
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.49
Consensus pattern (34 bp):
ACTTGCGATTCAATCTCGATCATTTCATTTTTCA
Found at i:15290300 original size:33 final size:33
Alignment explanation
Indices: 15290239--15290315 Score: 84
Period size: 33 Copynumber: 2.3 Consensus size: 33
15290229 AATCTCGATC
* * *
15290239 ATTTCATTTTTCAACTTGTGATTTAGTCTCGGTT
1 ATTTCA-TTTTCAACTTGTGATTCAGTCTAGGTA
*
15290273 ATTTCATTTTCAAACTT-TGGTTCAGTCTAGGTA
1 ATTTCATTTTC-AACTTGTGATTCAGTCTAGGTA
*
15290306 ATTTAATTTT
1 ATTTCATTTT
15290316 AGATTTTCGC
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
33 26 0.70
34 11 0.30
ACGTcount: A:0.22, C:0.13, G:0.13, T:0.52
Consensus pattern (33 bp):
ATTTCATTTTCAACTTGTGATTCAGTCTAGGTA
Found at i:15290399 original size:33 final size:32
Alignment explanation
Indices: 15290328--15290402 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 32
15290318 ATTTTCGCTT
* ** *
15290328 ATTTCACTTTCAAACTTTAGTTCAATCCATTTG
1 ATTTCA-TTTCAAACTTCAGTTCAATCCAAGTA
*
15290361 GTTTCATTCTCAAACTTCAGTTCAATCCAAGTA
1 ATTTCATT-TCAAACTTCAGTTCAATCCAAGTA
15290394 ATTTCATTT
1 ATTTCATTT
15290403 TAGTCTTCAA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
32 3 0.09
33 32 0.91
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.44
Consensus pattern (32 bp):
ATTTCATTTCAAACTTCAGTTCAATCCAAGTA
Found at i:15292016 original size:7 final size:7
Alignment explanation
Indices: 15292006--15292120 Score: 59
Period size: 7 Copynumber: 17.7 Consensus size: 7
15291996 AGGATTAGCT
15292006 TTTAGGG
1 TTTAGGG
*
15292013 TTTAAGG
1 TTTAGGG
15292020 -TTAGGG
1 TTTAGGG
15292026 TTTA-GG
1 TTTAGGG
*
15292032 TTTAAGG
1 TTTAGGG
* *
15292039 -TTAAGA
1 TTTAGGG
*
15292045 TTT--GA
1 TTTAGGG
15292050 TTTAGGG
1 TTTAGGG
*
15292057 TTTAAGG
1 TTTAGGG
15292064 TTTA--G
1 TTTAGGG
*
15292069 TTCAGGG
1 TTTAGGG
* *
15292076 CTAAGGG
1 TTTAGGG
*
15292083 -TTAGGA
1 TTTAGGG
*
15292089 ATTAGGG
1 TTTAGGG
*
15292096 TTTAAGG
1 TTTAGGG
15292103 TTTA-GG
1 TTTAGGG
15292109 TTTAGGG
1 TTTAGGG
15292116 TTTAG
1 TTTAG
15292121 TGTTAAGATT
Statistics
Matches: 86, Mismatches: 13, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
5 9 0.10
6 26 0.30
7 51 0.59
ACGTcount: A:0.23, C:0.02, G:0.34, T:0.41
Consensus pattern (7 bp):
TTTAGGG
Found at i:15292040 original size:13 final size:13
Alignment explanation
Indices: 15292006--15292139 Score: 55
Period size: 13 Copynumber: 10.3 Consensus size: 13
15291996 AGGATTAGCT
*
15292006 TTTAGGGTTTAAGG
1 TTTAAGGTTT-AGG
*
15292020 -TTAGGGTTTAGG
1 TTTAAGGTTTAGG
* *
15292032 TTTAAGGTTAAGA
1 TTTAAGGTTTAGG
*
15292045 TTT--GATTTAGGG
1 TTTAAGGTTTA-GG
15292057 TTTAAGGTTTA-G
1 TTTAAGGTTTAGG
* * * *
15292069 TTCAGGGCTAAGG
1 TTTAAGGTTTAGG
* *
15292082 GTT-AGGAATTAGGG
1 TTTAAGG-TTTA-GG
15292096 TTTAAGGTTTAGG
1 TTTAAGGTTTAGG
*
15292109 TTTAGGGTTTA-G
1 TTTAAGGTTTAGG
*
15292121 TGTTAAGATTTGAGG
1 T-TTAAGGTTT-AGG
15292136 TTTA
1 TTTA
15292140 GTTTAGGGTT
Statistics
Matches: 88, Mismatches: 21, Indels: 22
0.67 0.16 0.17
Matches are distributed among these distances:
11 4 0.05
12 19 0.22
13 44 0.50
14 16 0.18
15 5 0.06
ACGTcount: A:0.24, C:0.01, G:0.33, T:0.42
Consensus pattern (13 bp):
TTTAAGGTTTAGG
Found at i:15293083 original size:10 final size:10
Alignment explanation
Indices: 15293055--15293111 Score: 64
Period size: 10 Copynumber: 5.6 Consensus size: 10
15293045 AAAAAAAAAA
15293055 AAGAAAATG-
1 AAGAAAATGC
15293064 ATATGAAAATGC
1 A-A-GAAAATGC
15293076 AAGAAAATGC
1 AAGAAAATGC
15293086 AAGAAAATGC
1 AAGAAAATGC
*
15293096 TATG-AAATGC
1 -AAGAAAATGC
15293106 AAGAAA
1 AAGAAA
15293112 GGAAACTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
9 3 0.07
10 27 0.66
11 10 0.24
12 1 0.02
ACGTcount: A:0.58, C:0.07, G:0.19, T:0.16
Consensus pattern (10 bp):
AAGAAAATGC
Found at i:15296556 original size:25 final size:25
Alignment explanation
Indices: 15296496--15296618 Score: 86
Period size: 25 Copynumber: 4.9 Consensus size: 25
15296486 AAAATCATGG
* **
15296496 TAAACCTTAAAACCTGACCCTAATCC
1 TAAACCCTAAAACCAAACCCTAA-CC
** * *
15296522 -AAACTTTAAAGCCAAATCCTAACC
1 TAAACCCTAAAACCAAACCCTAACC
* *
15296546 TAAACCCTAAAACTAAACCCTAACT
1 TAAACCCTAAAACCAAACCCTAACC
* * * *
15296571 TAAACCCTAAAATCTAACCTTAATC
1 TAAACCCTAAAACCAAACCCTAACC
* * *
15296596 TAAACTCAAAAACTAAACCCTAA
1 TAAACCCTAAAACCAAACCCTAA
15296619 ACCTTTGTCG
Statistics
Matches: 73, Mismatches: 23, Indels: 3
0.74 0.23 0.03
Matches are distributed among these distances:
24 2 0.03
25 71 0.97
ACGTcount: A:0.46, C:0.30, G:0.02, T:0.22
Consensus pattern (25 bp):
TAAACCCTAAAACCAAACCCTAACC
Found at i:15296563 original size:13 final size:13
Alignment explanation
Indices: 15296545--15296619 Score: 68
Period size: 13 Copynumber: 5.9 Consensus size: 13
15296535 AAATCCTAAC
15296545 CTAAACCCTAAAA
1 CTAAACCCTAAAA
15296558 CTAAACCCT--AA
1 CTAAACCCTAAAA
15296569 CTTAAACCCTAAAA
1 C-TAAACCCTAAAA
* *
15296583 TCT-AA-CCTTAAT
1 -CTAAACCCTAAAA
* *
15296595 CTAAACTCAAAAA
1 CTAAACCCTAAAA
15296608 CTAAACCCTAAA
1 CTAAACCCTAAA
15296620 CCTTTGTCGA
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
11 5 0.10
12 15 0.31
13 24 0.50
14 3 0.06
15 1 0.02
ACGTcount: A:0.49, C:0.29, G:0.00, T:0.21
Consensus pattern (13 bp):
CTAAACCCTAAAA
Found at i:15296717 original size:25 final size:25
Alignment explanation
Indices: 15296657--15296717 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
15296647 ACCTTGAAAT
***
15296657 CAAACCCTAAAACCTTACCCTAATC
1 CAAACCCTAAAACAAAACCCTAATC
* *
15296682 CAATCCTTAAAACAAAACCCTAA-C
1 CAAACCCTAAAACAAAACCCTAATC
15296706 CTAAACCCTAAA
1 C-AAACCCTAAA
15296718 CCTTGGCTAG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
24 2 0.07
25 26 0.93
ACGTcount: A:0.46, C:0.36, G:0.00, T:0.18
Consensus pattern (25 bp):
CAAACCCTAAAACAAAACCCTAATC
Found at i:15296747 original size:29 final size:29
Alignment explanation
Indices: 15296708--15296803 Score: 183
Period size: 29 Copynumber: 3.3 Consensus size: 29
15296698 ACCCTAACCT
15296708 AAACCCTAAACCTTGGCTAGAAATCACTA
1 AAACCCTAAACCTTGGCTAGAAATCACTA
15296737 AAACCCTAAACCTTGGCTAGAAATCACTA
1 AAACCCTAAACCTTGGCTAGAAATCACTA
*
15296766 AAACCCTAAACCTTAGCTAGAAATCACTA
1 AAACCCTAAACCTTGGCTAGAAATCACTA
15296795 AAACCCTAA
1 AAACCCTAA
15296804 CCCTAGCTGA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.44, C:0.28, G:0.08, T:0.20
Consensus pattern (29 bp):
AAACCCTAAACCTTGGCTAGAAATCACTA
Found at i:15296830 original size:19 final size:19
Alignment explanation
Indices: 15296795--15296841 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
15296785 GAAATCACTA
*
15296795 AAACCCT-AACCCTAGCTG
1 AAACCCTAAACCCAAGCTG
* *
15296813 AAACCTTAAACCCAAGCTT
1 AAACCCTAAACCCAAGCTG
15296832 AAACCCTAAA
1 AAACCCTAAA
15296842 ACTTGAAAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 6 0.25
19 18 0.75
ACGTcount: A:0.43, C:0.34, G:0.06, T:0.17
Consensus pattern (19 bp):
AAACCCTAAACCCAAGCTG
Found at i:15297121 original size:19 final size:19
Alignment explanation
Indices: 15297099--15297158 Score: 75
Period size: 19 Copynumber: 3.2 Consensus size: 19
15297089 CTTAAGCTCA
15297099 AAACCAAACCCTAAACCCT
1 AAACCAAACCCTAAACCCT
*
15297118 AAACCAAACCTTAAACCCT
1 AAACCAAACCCTAAACCCT
* * * *
15297137 ATACCTAGCCCTTAACCCT
1 AAACCAAACCCTAAACCCT
15297156 AAA
1 AAA
15297159 TATGACGCAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.43, C:0.38, G:0.02, T:0.17
Consensus pattern (19 bp):
AAACCAAACCCTAAACCCT
Found at i:15298470 original size:36 final size:37
Alignment explanation
Indices: 15298415--15298506 Score: 116
Period size: 36 Copynumber: 2.5 Consensus size: 37
15298405 TATTCATTGT
* * * *
15298415 AAATAATAGTTAAGCCTAAGTTAGTGTTT-TGCATCA
1 AAATGATAGTTAAACCTAAGTAAGTGTTTAGGCATCA
* *
15298451 AAATGATAGTTAAATCTAAGTAAGTGTTTAGGTATCA
1 AAATGATAGTTAAACCTAAGTAAGTGTTTAGGCATCA
15298488 AAATGATAGTT-AACCTAAG
1 AAATGATAGTTAAACCTAAG
15298507 CCAATGTTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
36 32 0.67
37 16 0.33
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.34
Consensus pattern (37 bp):
AAATGATAGTTAAACCTAAGTAAGTGTTTAGGCATCA
Found at i:15298515 original size:36 final size:37
Alignment explanation
Indices: 15298415--15298517 Score: 104
Period size: 36 Copynumber: 2.8 Consensus size: 37
15298405 TATTCATTGT
* * ** * *
15298415 AAATAATAGTTAAGCCTAAGTTAGTGTTT-TGCATCA
1 AAATGATAGTTAAACCTAAGCAAGTGTTTAGGTATCA
* *
15298451 AAATGATAGTTAAATCTAAGTAAGTGTTTAGGTATCA
1 AAATGATAGTTAAACCTAAGCAAGTGTTTAGGTATCA
15298488 AAATGATAGTT-AACCTAAGCCAA-TGTTTAG
1 AAATGATAGTTAAACCTAAG-CAAGTGTTTAG
15298518 CCATGGCTAA
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
36 39 0.68
37 18 0.32
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.34
Consensus pattern (37 bp):
AAATGATAGTTAAACCTAAGCAAGTGTTTAGGTATCA
Found at i:15303969 original size:12 final size:12
Alignment explanation
Indices: 15303930--15303970 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
15303920 TAATTTTAAT
15303930 TTATTGATTTGC
1 TTATTGATTTGC
*
15303942 TGATTGATTTGC
1 TTATTGATTTGC
*
15303954 TTATTGATTTGT
1 TTATTGATTTGC
15303966 TTATT
1 TTATT
15303971 TTTTATTTAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.17, C:0.05, G:0.17, T:0.61
Consensus pattern (12 bp):
TTATTGATTTGC
Found at i:15304944 original size:6 final size:6
Alignment explanation
Indices: 15304920--15304982 Score: 67
Period size: 6 Copynumber: 10.8 Consensus size: 6
15304910 TCCACAATTG
* * *
15304920 AATAA- AATAA- AACAAC AATAAC AATAAC AACAAC AACAAC AATAAC
1 AATAAC AATAAC AATAAC AATAAC AATAAC AATAAC AATAAC AATAAC
* *
15304966 AATAAT AATAAT AATAA
1 AATAAC AATAAC AATAA
15304983 ATAAATAAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
5 9 0.17
6 43 0.83
ACGTcount: A:0.70, C:0.14, G:0.00, T:0.16
Consensus pattern (6 bp):
AATAAC
Found at i:15304951 original size:9 final size:9
Alignment explanation
Indices: 15304925--15304973 Score: 55
Period size: 9 Copynumber: 5.6 Consensus size: 9
15304915 AATTGAATAA
15304925 AATAA-AAC
1 AATAACAAC
* *
15304933 AACAATAAC
1 AATAACAAC
15304942 AATAACAAC
1 AATAACAAC
*
15304951 AACAACAAC
1 AATAACAAC
*
15304960 AATAACAAT
1 AATAACAAC
15304969 AATAA
1 AATAA
15304974 TAATAATAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
8 4 0.12
9 30 0.88
ACGTcount: A:0.69, C:0.18, G:0.00, T:0.12
Consensus pattern (9 bp):
AATAACAAC
Found at i:15305424 original size:27 final size:26
Alignment explanation
Indices: 15305375--15305429 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
15305365 GTTGCACAAG
*
15305375 ATTATGATAAGATAAGAGAAAATGAT
1 ATTATGATAAGATAAGAGAAAATAAT
* **
15305401 ATTATGAATAAGATTAGATTAAATAAT
1 ATTATG-ATAAGATAAGAGAAAATAAT
15305428 AT
1 AT
15305430 CATTCTATCT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 6 0.25
27 18 0.75
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.33
Consensus pattern (26 bp):
ATTATGATAAGATAAGAGAAAATAAT
Found at i:15306947 original size:17 final size:16
Alignment explanation
Indices: 15306923--15306956 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
15306913 TTTAATTTTT
*
15306923 TTAATTTTTAAAAATA
1 TTAAATTTTAAAAATA
15306939 TTAAATTTTAAAAATA
1 TTAAATTTTAAAAATA
15306955 TT
1 TT
15306957 TTAGTTCCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TTAAATTTTAAAAATA
Found at i:15310312 original size:7 final size:7
Alignment explanation
Indices: 15310300--15310334 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
15310290 CTAATTCTAA
15310300 TTTTAAT
1 TTTTAAT
15310307 TTTTAAT
1 TTTTAAT
15310314 TTTTAAT
1 TTTTAAT
15310321 TATTT-AT
1 T-TTTAAT
15310328 TTTTAAT
1 TTTTAAT
15310335 AAAAACAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 3 0.12
7 20 0.77
8 3 0.12
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
TTTTAAT
Found at i:15310748 original size:2 final size:2
Alignment explanation
Indices: 15310741--15310772 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
15310731 GAATTGGGGC
15310741 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15310773 TGGTGCAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15313079 original size:57 final size:56
Alignment explanation
Indices: 15312982--15313095 Score: 142
Period size: 57 Copynumber: 2.0 Consensus size: 56
15312972 CATCACATCT
* *
15312982 AGAAACAAAGTATCTAATGAGATGATATCTCCTTAGTACATGTTTGGATCTTTAATG
1 AGAAACAAAGTATCTAATGAGATGATATCTCCTCAATACATGTTT-GATCTTTAATG
* * *
15313039 AGAAATAAAGTTTCTAATG-GAATGATATCGT-CTCAATACATGTTTGATCTTTGATG
1 AGAAACAAAGTATCTAATGAG-ATGATATC-TCCTCAATACATGTTTGATCTTTAATG
15313095 A
1 A
15313096 AACCTTGGTT
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
56 12 0.24
57 37 0.74
58 1 0.02
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (56 bp):
AGAAACAAAGTATCTAATGAGATGATATCTCCTCAATACATGTTTGATCTTTAATG
Found at i:15319242 original size:11 final size:11
Alignment explanation
Indices: 15319214--15319245 Score: 55
Period size: 12 Copynumber: 2.8 Consensus size: 11
15319204 CTTTTTCTTA
15319214 TTACTTGATTT
1 TTACTTGATTT
15319225 TTCACTTGATTT
1 TT-ACTTGATTT
15319237 TTACTTGAT
1 TTACTTGAT
15319246 ACAAGAGGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.45
12 11 0.55
ACGTcount: A:0.19, C:0.12, G:0.09, T:0.59
Consensus pattern (11 bp):
TTACTTGATTT
Found at i:15321488 original size:17 final size:19
Alignment explanation
Indices: 15321462--15321499 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
15321452 AAAAGAAAGT
15321462 AAATGCAAAAAACTA-AAA
1 AAATGCAAAAAACTAGAAA
*
15321480 AAATG-AAAAATCTAGAAA
1 AAATGCAAAAAACTAGAAA
15321498 AA
1 AA
15321500 GTCTCTCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.71, C:0.08, G:0.08, T:0.13
Consensus pattern (19 bp):
AAATGCAAAAAACTAGAAA
Found at i:15322804 original size:64 final size:64
Alignment explanation
Indices: 15322617--15322807 Score: 206
Period size: 64 Copynumber: 3.0 Consensus size: 64
15322607 ATATATGAGT
* * * * *
15322617 TTTTTGCATGTTTTGGTGATGATATATGAATTTTATTCAAATTTCTTGGTGGTGATATTCAAGT
1 TTTTAGCATGTTTTGGTGATGATATATGAATTTTATTAAAACTTCTTGGTGGTGATATCCAAGG
* * * * ** *
15322681 TTTCTA-TATATTTTGGTGATGATATACGAATTTTTTTTAAAACTT-TTCATGGTGATATCCGAG
1 TTT-TAGCATGTTTTGGTGATGATATATGAA-TTTTATTAAAACTTCTTGGTGGTGATATCCAAG
15322744 G
64 G
* * * *
15322745 TTTTAGCATGTTTTGGTGATGTTATATGGACTTTATTAAAACTTCTTGGTGGTGCTATCCAAG
1 TTTTAGCATGTTTTGGTGATGATATATGAATTTTATTAAAACTTCTTGGTGGTGATATCCAAG
15322808 TATTCAAATT
Statistics
Matches: 100, Mismatches: 23, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
63 14 0.14
64 74 0.74
65 12 0.12
ACGTcount: A:0.24, C:0.09, G:0.20, T:0.47
Consensus pattern (64 bp):
TTTTAGCATGTTTTGGTGATGATATATGAATTTTATTAAAACTTCTTGGTGGTGATATCCAAGG
Found at i:15322857 original size:42 final size:43
Alignment explanation
Indices: 15322788--15322870 Score: 107
Period size: 43 Copynumber: 2.0 Consensus size: 43
15322778 TATTAAAACT
* * *
15322788 TCTTGGTGGTGCTATCCAAGTATTC-AAATTCCAAAATTTCAAA
1 TCTTGATGGTGATATCCAAGTATTCAAAACTCC-AAATTTCAAA
*
15322831 TCTTGATGGTGATA-CCGAGTATTCAAAACTCCAAATTTCA
1 TCTTGATGGTGATATCCAAGTATTCAAAACTCCAAATTTCA
15322871 TTCAAATCTC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 17 0.49
43 18 0.51
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (43 bp):
TCTTGATGGTGATATCCAAGTATTCAAAACTCCAAATTTCAAA
Found at i:15323348 original size:94 final size:93
Alignment explanation
Indices: 15323250--15323651 Score: 275
Period size: 94 Copynumber: 4.3 Consensus size: 93
15323240 GGTAATAGCT
* *
15323250 GAAGTCATTTTTTATTTTTCTTAGTGGCAATATCCGAAGTTCTCTTGCATTCTTCTTGGTGTCAA
1 GAAGTCATTTTTTATTTTCCTTAGTGGCAATATCCAAAGTTCTCTTGCATTCTTCTTGGTG-CAA
* *
15323315 TATCCAAAAACCCTTAGGTGGTGACATTC
65 TATCCAAAAACTCTTAGGTGGTGATATTC
** * * ** * ** *
15323344 GAAGTCATTTTCCATTCTCCTTGGTGGTGATATCTAAAGTTCTCTTGCATT-TTCCTCAGTAGCG
1 GAAGTCATTTTTTATTTTCCTTAGTGGCAATATCCAAAGTTCTCTTGCATTCTT-CTTGGT-GCA
*
15323408 ATATCCAAAAACTCTTTGGTAGG-GATATTC
64 ATATCCAAAAACTCTTAGGT-GGTGATATTC
* * * * ** *
15323438 AAAGTCATTTTTTGTTTTCCTCATTGGTGATATCCAAAGTTCTCTTGCATTC-TCGTTGGTGGGA
1 GAAGTCATTTTTTATTTTCCTTAGTGGCAATATCCAAAGTTCTCTTGCATTCTTC-TTGGT-GCA
** *
15323502 ATATCCAGCAACTATTCA-GTGGCT-ATATTC
64 ATATCCAAAAACTCTT-AGGTGG-TGATATTC
** * * * *
15323532 -AAGGTCATTTTTTATTTTTTTTAGTGGCAATATGCAAAATCCTCTTACATTC-TCTTTGGTG-A
1 GAA-GTCATTTTTTATTTTCCTTAGTGGCAATATCCAAAGTTCTCTTGCATTCTTC-TTGGTGCA
* ***
15323594 GGATATCCAAAAACTTTTTA-GTGACAATA-TC
64 --ATATCCAAAAAC-TCTTAGGTGGTGATATTC
**
15323625 TGAAGTCATTTTGCATTTTCCTTAGTG
1 -GAAGTCATTTTTTATTTTCCTTAGTG
15323652 ACGATATTTG
Statistics
Matches: 239, Mismatches: 54, Indels: 30
0.74 0.17 0.09
Matches are distributed among these distances:
92 1 0.00
93 10 0.04
94 220 0.92
95 8 0.03
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.41
Consensus pattern (93 bp):
GAAGTCATTTTTTATTTTCCTTAGTGGCAATATCCAAAGTTCTCTTGCATTCTTCTTGGTGCAAT
ATCCAAAAACTCTTAGGTGGTGATATTC
Found at i:15323890 original size:16 final size:15
Alignment explanation
Indices: 15323871--15323904 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
15323861 CAAATCTAAA
15323871 AAAGAAAAAAAAAAAG
1 AAAG-AAAAAAAAAAG
*
15323887 AAAGAAAAAGAAAAG
1 AAAGAAAAAAAAAAG
15323902 AAA
1 AAA
15323905 AGAAGAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAAAAAAG
Found at i:15323906 original size:16 final size:15
Alignment explanation
Indices: 15323868--15323908 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
15323858 GGACAAATCT
15323868 AAAAAAGAAAAAAAA
1 AAAAAAGAAAAAAAA
15323883 AAAGAAAGAAAAAGAAA
1 AAA-AAAGAAAAA-AAA
*
15323900 AGAAAAGAA
1 AAAAAAGAA
15323909 GAATTCTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 3 0.13
16 15 0.65
17 5 0.22
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAAAAGAAAAAAAA
Found at i:15324393 original size:25 final size:25
Alignment explanation
Indices: 15324359--15324406 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
15324349 TAAATCATGT
*
15324359 TTTAATATTATTTAATTAATTTTAA
1 TTTAATATTATTTAATGAATTTTAA
*
15324384 TTTAATATTATTTCATGAATTTT
1 TTTAATATTATTTAATGAATTTT
15324407 GATGTATTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (25 bp):
TTTAATATTATTTAATGAATTTTAA
Found at i:15324838 original size:144 final size:143
Alignment explanation
Indices: 15324381--15324828 Score: 424
Period size: 144 Copynumber: 3.1 Consensus size: 143
15324371 TAATTAATTT
* * * * * * * *
15324381 TAATTTAATATTATTTCATGAATTTTGATGTATTCAAAATTTTGATTGTACCTTAGAAAAGTAT-
1 TAATTAAATATTATTCCATAAATTTTGATGCATTAAAAAATTTGATTGCACCTTAGAAATG-ATG
* * * * * * *
15324445 AAATTACCAAAATATCT-TTTAAGGATATTTTCATAACTTGACCTTTTCGATGTCAGTTCTTCAT
65 AAATTACCAAAAT-TCTCTTTAAGG-TATTTTTATAATTTGACTTTTTCAAAGTCTGTTTTTCAT
15324509 GAAAAACTCCAAATCA
128 GAAAAACTCCAAATCA
* ** * * *
15324525 TGATTAAATATTATTCCATAAATTTTGATGCATTAAAAACCTTGATTGCATCTTAAAAATGTTGA
1 TAATTAAATATTATTCCATAAATTTTGATGCATTAAAAAATTTGATTGCACCTTAGAAATGATGA
* * *
15324590 AATTACCAAAATTAC-CTTTTAGGGGTATTTTTATAATTTGACCTTATT-AAGGT-TGTTTTTC-
66 AATTACCAAAATT-CTC-TTTA-AGGTATTTTTATAATTTGA-CTTTTTCAAAGTCTGTTTTTCA
*
15324651 -GCAAAAACTTCCATATCA
127 TG-AAAAAC-TCCAAATCA
* * * *
15324669 TATTTTAATATTGTTCCATAAATTTTGATACATTAAAAAATTTGATTGCACCTTAGAAATGATGA
1 TAATTAAATATTATTCCATAAATTTTGATGCATTAAAAAATTTGATTGCACCTTAGAAATGATGA
* * * * *
15324734 AATTACTAGAATTCTCTTTACGAGTATTTTTGTAATTTGACTTTTTCAAAGTCCTTTTTTTCATG
66 AATTACCAAAATTCTCTTTAAG-GTATTTTTATAATTTGACTTTTTCAAAGT-CTGTTTTTCATG
* *
15324799 ATAAGCTCCAAATCA
129 AAAAACTCCAAATCA
15324814 TAATTAAATATTATT
1 TAATTAAATATTATT
15324829 TTATGATTTT
Statistics
Matches: 243, Mismatches: 46, Indels: 29
0.76 0.14 0.09
Matches are distributed among these distances:
142 7 0.03
143 33 0.14
144 144 0.59
145 48 0.20
146 10 0.04
147 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (143 bp):
TAATTAAATATTATTCCATAAATTTTGATGCATTAAAAAATTTGATTGCACCTTAGAAATGATGA
AATTACCAAAATTCTCTTTAAGGTATTTTTATAATTTGACTTTTTCAAAGTCTGTTTTTCATGAA
AAACTCCAAATCA
Found at i:15325863 original size:24 final size:24
Alignment explanation
Indices: 15325830--15325890 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
15325820 CTTAAACCCT
*
15325830 AAACCTTAAAACCAACCCTAATCC
1 AAACCTTAAAACCAACCATAATCC
* * *
15325854 AAACCCTAAAACCAACTATAATCT
1 AAACCTTAAAACCAACCATAATCC
15325878 AAACCTTAAAACC
1 AAACCTTAAAACC
15325891 TCAAAACTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.49, C:0.33, G:0.00, T:0.18
Consensus pattern (24 bp):
AAACCTTAAAACCAACCATAATCC
Found at i:15325947 original size:20 final size:20
Alignment explanation
Indices: 15325900--15326029 Score: 120
Period size: 20 Copynumber: 6.5 Consensus size: 20
15325890 CTCAAAACTT
* * *
15325900 AACCCTAAA-GCCAAAGTTA
1 AACCCTAAACCCCAAAATCA
* *
15325919 AACCTTAAACCCTAAAATCA
1 AACCCTAAACCCCAAAATCA
* * *
15325939 AACACTAAAACCCAAAGTC-
1 AACCCTAAACCCCAAAATCA
* *
15325958 AACTCTTAAACCCCAAAATTA
1 AAC-CCTAAACCCCAAAATCA
* **
15325979 AACCCTAAACCCCAACATTT
1 AACCCTAAACCCCAAAATCA
15325999 AACCCTAAACCCCAAAATCA
1 AACCCTAAACCCCAAAATCA
15326019 AACCCTAAACC
1 AACCCTAAACC
15326030 TAAAGTCAAA
Statistics
Matches: 87, Mismatches: 21, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
19 11 0.13
20 73 0.84
21 3 0.03
ACGTcount: A:0.48, C:0.34, G:0.02, T:0.16
Consensus pattern (20 bp):
AACCCTAAACCCCAAAATCA
Found at i:15325954 original size:40 final size:40
Alignment explanation
Indices: 15325877--15326035 Score: 148
Period size: 40 Copynumber: 4.0 Consensus size: 40
15325867 AACTATAATC
* * *
15325877 TAAACCTTAAAACCTCAAAA-CTTAACCCT-AAAGCCAAAGT
1 TAAACCTT-AAACCCCAAAATC-AAACCCTAAAACCCAAAGT
* *
15325917 TAAACCTTAAACCCTAAAATCAAACACTAAAACCCAAAG-
1 TAAACCTTAAACCCCAAAATCAAACCCTAAAACCCAAAGT
* * *
15325956 TCAACTCTTAAACCCCAAAATTAAACCCTAAACCCCAACA-T
1 TAAAC-CTTAAACCCCAAAATCAAACCCTAAAACCCAA-AGT
* * *
15325997 TTAACCCTAAACCCCAAAATCAAACCCT-AAACCTAAAGT
1 TAAACCTTAAACCCCAAAATCAAACCCTAAAACCCAAAGT
15326036 CAAATCCTAA
Statistics
Matches: 98, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
38 1 0.01
39 25 0.26
40 67 0.68
41 5 0.05
ACGTcount: A:0.48, C:0.31, G:0.03, T:0.18
Consensus pattern (40 bp):
TAAACCTTAAACCCCAAAATCAAACCCTAAAACCCAAAGT
Found at i:15326028 original size:60 final size:59
Alignment explanation
Indices: 15325884--15326029 Score: 141
Period size: 60 Copynumber: 2.4 Consensus size: 59
15325874 ATCTAAACCT
* * * * *
15325884 TAAAACCTCAAAACTTAACCCTAAA-GCCAAAGTTAAACCTTAAACCCTAAAATCAAACAC
1 TAAAACC-CAAAA-TCAACCCTAAACCCCAAAATTAAACCCTAAACCCCAAAATCAAACAC
* * * ** *
15325944 TAAAACCCAAAGTCAACTCTTAAACCCCAAAATTAAACCCTAAACCCCAACATTTAACCC
1 TAAAACCCAAAATCAAC-CCTAAACCCCAAAATTAAACCCTAAACCCCAAAATCAAACAC
*
15326004 TAAACCCCAAAATCAAACCCTAAACC
1 TAAAACCCAAAATC-AACCCTAAACC
15326030 TAAAGTCAAA
Statistics
Matches: 69, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
58 4 0.06
59 9 0.13
60 53 0.77
61 3 0.04
ACGTcount: A:0.48, C:0.33, G:0.02, T:0.17
Consensus pattern (59 bp):
TAAAACCCAAAATCAACCCTAAACCCCAAAATTAAACCCTAAACCCCAAAATCAAACAC
Found at i:15327519 original size:17 final size:17
Alignment explanation
Indices: 15327497--15327552 Score: 76
Period size: 17 Copynumber: 3.2 Consensus size: 17
15327487 ATTACCTTAA
15327497 TTTTTTTCCTTTTTCTT
1 TTTTTTTCCTTTTTCTT
15327514 TTTTTTTCCTTTTTCCTT
1 TTTTTTTCCTTTTT-CTT
* *
15327532 TTTCATTTCTTTTTTCTT
1 TTT-TTTTCCTTTTTCTT
15327550 TTT
1 TTT
15327553 ATTTAAGTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
17 14 0.40
18 12 0.34
19 9 0.26
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (17 bp):
TTTTTTTCCTTTTTCTT
Found at i:15327531 original size:24 final size:25
Alignment explanation
Indices: 15327499--15327552 Score: 85
Period size: 24 Copynumber: 2.2 Consensus size: 25
15327489 TACCTTAATT
15327499 TTTTTCCTTTTTC-TTT-TTTTTTCC
1 TTTTTCCTTTTTCATTTCTTTTTT-C
15327523 TTTTTCCTTTTTCATTTCTTTTTTC
1 TTTTTCCTTTTTCATTTCTTTTTTC
15327548 TTTTT
1 TTTTT
15327553 ATTTAAGTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
24 13 0.46
25 9 0.32
26 6 0.21
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.80
Consensus pattern (25 bp):
TTTTTCCTTTTTCATTTCTTTTTTC
Found at i:15327556 original size:17 final size:17
Alignment explanation
Indices: 15327497--15327556 Score: 68
Period size: 18 Copynumber: 3.5 Consensus size: 17
15327487 ATTACCTTAA
*
15327497 TTTT-TTTCCTTTTTCT
1 TTTTATTTCTTTTTTCT
* *
15327513 TTTTTTTTCCTTTTTCCT
1 TTTTATTT-CTTTTTTCT
15327531 TTTTCATTTCTTTTTTCT
1 TTTT-ATTTCTTTTTTCT
15327549 TTTTATTT
1 TTTTATTT
15327557 AAGTTTTCTT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
16 4 0.11
17 7 0.19
18 23 0.62
19 3 0.08
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (17 bp):
TTTTATTTCTTTTTTCT
Found at i:15328492 original size:18 final size:18
Alignment explanation
Indices: 15328469--15328513 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
15328459 TTGCTTTTTC
15328469 TCTTTTCTT-ATTTTTATA
1 TCTTTT-TTAATTTTTATA
*
15328487 TCTTTTTTAATTTTTATT
1 TCTTTTTTAATTTTTATA
15328505 TACTTTTTT
1 T-CTTTTTT
15328514 TCCTTTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 2 0.08
18 15 0.62
19 7 0.29
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.76
Consensus pattern (18 bp):
TCTTTTTTAATTTTTATA
Found at i:15328548 original size:18 final size:18
Alignment explanation
Indices: 15328525--15328575 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 18
15328515 CCTTTTTAAA
15328525 ATATTTAATAAATTTTTT
1 ATATTTAATAAATTTTTT
*
15328543 ATA-TT--T-ACTTTTTT
1 ATATTTAATAAATTTTTT
15328557 ATATTTAATAAATTTTTT
1 ATATTTAATAAATTTTTT
15328575 A
1 A
15328576 ACTTTTTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
14 10 0.37
15 3 0.11
17 3 0.11
18 11 0.41
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (18 bp):
ATATTTAATAAATTTTTT
Found at i:15328556 original size:14 final size:14
Alignment explanation
Indices: 15328537--15328563 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15328527 ATTTAATAAA
15328537 TTTTTTATATTTAC
1 TTTTTTATATTTAC
15328551 TTTTTTATATTTA
1 TTTTTTATATTTA
15328564 ATAAATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTTTATATTTAC
Found at i:15328715 original size:29 final size:29
Alignment explanation
Indices: 15328655--15328721 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
15328645 TGTGTGTATA
* * **
15328655 TATATATATATATATTATTTATTGAATTT
1 TATATTTATATATATTATTTAATGAAAAT
15328684 TATATTTATATATATTATATTAAT-AAAAT
1 TATATTTATATATATTAT-TTAATGAAAAT
15328713 TATTATTTA
1 TA-TATTTA
15328722 ATACCTTAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 22 0.69
30 10 0.31
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (29 bp):
TATATTTATATATATTATTTAATGAAAAT
Found at i:15333958 original size:21 final size:20
Alignment explanation
Indices: 15333932--15333973 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
15333922 AGAAGAAACC
*
15333932 AAAGAAAAGAAAAAATCCTTT
1 AAAGAAAA-AAAAAATCATTT
*
15333953 AAAGAAGAAAAAAATCATTT
1 AAAGAAAAAAAAAATCATTT
15333973 A
1 A
15333974 CAAAGCCCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.64, C:0.07, G:0.10, T:0.19
Consensus pattern (20 bp):
AAAGAAAAAAAAAATCATTT
Found at i:15334294 original size:49 final size:48
Alignment explanation
Indices: 15334090--15334295 Score: 184
Period size: 49 Copynumber: 4.2 Consensus size: 48
15334080 TCTTCATAAG
* * * * *
15334090 AGAAATTTTTAAAGTCACATGCCTATCTTCATAAGAACCCTTTTTAAA
1 AGAAATTTTTAAAGTCACTTGCCTATCTTTATAAGAGCACTTTTCAAA
* *
15334138 ATGAAATTTTAAAAATC-CGTTGCCTATCTTTATAAGAGCACTTTTCAAA
1 A-GAAATTTTTAAAGTCAC-TTGCCTATCTTTATAAGAGCACTTTTCAAA
* * * * * *
15334187 TA-ATGATTTTTAAAGTTATTTGTCTATGTTTATAAGAGTACTTTTCAAA
1 -AGA-AATTTTTAAAGTCACTTGCCTATCTTTATAAGAGCACTTTTCAAA
* * *
15334236 AAAAGATTTTTAAAGTCACTTGCCTATCTCTATATA-AGCCCTTTTCAAA
1 AGAA-ATTTTTAAAGTCACTTGCCTATCTTTATA-AGAGCACTTTTCAAA
15334285 AGGAAATTTTT
1 A-GAAATTTTT
15334296 TTTAAATTTA
Statistics
Matches: 125, Mismatches: 24, Indels: 17
0.75 0.14 0.10
Matches are distributed among these distances:
48 4 0.03
49 117 0.94
50 4 0.03
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (48 bp):
AGAAATTTTTAAAGTCACTTGCCTATCTTTATAAGAGCACTTTTCAAA
Found at i:15334472 original size:141 final size:141
Alignment explanation
Indices: 15334227--15334484 Score: 326
Period size: 141 Copynumber: 1.8 Consensus size: 141
15334217 TATAAGAGTA
* * *
15334227 CTTTTCAAAAAAAGATTTTTAAAGTCACTTGCCTATCTCTATATAAGCCCTTTTCAAAAGGAAAT
1 CTTTTCAAAAAAAGATTTTTAAAGTCACTTGCCTATCTCTATAGAAACCCTTTTCAAAAAGAAAT
* * *
15334292 TTTTTTTAAATTTATTGCCTATTTTCATAGGAGTTCATTTAAAAAAAAAATTTTATTGTTTATCT
66 TTTTTTAAAATTTATTGCCTATTTTCATAAGAGTCCATTTAAAAAAAAAATTTTATTGTTTATCT
15334357 TCATAGGAGCC
131 TCATAGGAGCC
* * ** * *
15334368 CTTTTCAAAAAAAGATTTTTAAAGTTTA-TTGCCTATCT-TCATCGAAACTTTTTTTAAAAAGAG
1 CTTTTCAAAAAAAGATTTTTAAAG-TCACTTGCCTATCTCT-ATAGAAACCCTTTTCAAAAAGAA
* *
15334431 ATTTTTTTAAAATTTTGTTGCTTATCTTT-ATAAGAG-CCATTTAAAAAAAAAATT
64 ATTTTTTTAAAA-TTTATTGCCTAT-TTTCATAAGAGTCCATTTAAAAAAAAAATT
15334485 AAAAATTTGT
Statistics
Matches: 99, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
140 1 0.01
141 77 0.78
142 18 0.18
143 3 0.03
ACGTcount: A:0.36, C:0.12, G:0.09, T:0.43
Consensus pattern (141 bp):
CTTTTCAAAAAAAGATTTTTAAAGTCACTTGCCTATCTCTATAGAAACCCTTTTCAAAAAGAAAT
TTTTTTAAAATTTATTGCCTATTTTCATAAGAGTCCATTTAAAAAAAAAATTTTATTGTTTATCT
TCATAGGAGCC
Found at i:15334526 original size:47 final size:46
Alignment explanation
Indices: 15334437--15334527 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 46
15334427 AGAGATTTTT
* *
15334437 TTAAAATTTTGTTGCTTATCTTTATAAGAGCCATTTAAAAAAAAAA
1 TTAAAAATTTGTTGCTTATCTTCATAAGAGCCATTTAAAAAAAAAA
* * **
15334483 TTAAAAATTTGTTG-TCTATCTTCATATGAGTCATTTTCAAAAAAA
1 TTAAAAATTTGTTGCT-TATCTTCATAAGAGCCATTTAAAAAAAAA
15334528 TATAAAATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
45 1 0.03
46 37 0.97
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.41
Consensus pattern (46 bp):
TTAAAAATTTGTTGCTTATCTTCATAAGAGCCATTTAAAAAAAAAA
Found at i:15337545 original size:2 final size:2
Alignment explanation
Indices: 15337538--15337568 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
15337528 AAATCACAGA
15337538 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15337569 AACTAGCTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15342864 original size:13 final size:13
Alignment explanation
Indices: 15342846--15342870 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15342836 TCCTATTTAA
15342846 CTCCAAAATATCC
1 CTCCAAAATATCC
15342859 CTCCAAAATATC
1 CTCCAAAATATC
15342871 TAAGATAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.36, G:0.00, T:0.24
Consensus pattern (13 bp):
CTCCAAAATATCC
Found at i:15350574 original size:26 final size:26
Alignment explanation
Indices: 15350506--15350575 Score: 65
Period size: 26 Copynumber: 2.6 Consensus size: 26
15350496 TAGGATTAAG
*
15350506 TATTGATATTTTATT-TTATGATATTT
1 TATTTATA-TTTATTGTTATGATATTT
15350532 TATTTATATTTGGATTGTT-TGAT-TTT
1 TATTTATATTT--ATTGTTATGATATTT
15350558 TATTTATTTATTTATTGT
1 TATTTA--TATTTATTGT
15350576 ATTTTAAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
25 3 0.08
26 21 0.55
27 7 0.18
28 7 0.18
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.67
Consensus pattern (26 bp):
TATTTATATTTATTGTTATGATATTT
Found at i:15351448 original size:11 final size:10
Alignment explanation
Indices: 15351420--15351499 Score: 54
Period size: 11 Copynumber: 7.4 Consensus size: 10
15351410 ATTTCACTTC
*
15351420 TTTTTATTTTC
1 TTTTT-TTTTA
*
15351431 TTGTTTTCTTA
1 TT-TTTTTTTA
15351442 TTTTTTTTTA
1 TTTTTTTTTA
*
15351452 -TCTTTTTTA
1 TTTTTTTTTA
15351461 TTTGTTTTTTA
1 TTT-TTTTTTA
*
15351472 TTTTATTGTTTG
1 TTTT-TT-TTTA
15351484 TTTCTTTTATTA
1 TTT-TTTT-TTA
15351496 TTTT
1 TTTT
15351500 GATTATTCAT
Statistics
Matches: 55, Mismatches: 7, Indels: 14
0.72 0.09 0.18
Matches are distributed among these distances:
9 8 0.15
10 9 0.16
11 21 0.38
12 16 0.29
13 1 0.02
ACGTcount: A:0.10, C:0.05, G:0.05, T:0.80
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:15351457 original size:20 final size:20
Alignment explanation
Indices: 15351434--15351486 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
15351424 TATTTTCTTG
15351434 TTTTCTTATTT-TTTTTTATC
1 TTTT-TTATTTGTTTTTTATC
15351454 TTTTTTATTTGTTTTTTAT-
1 TTTTTTATTTGTTTTTTATC
* *
15351473 TTTATTGTTTGTTT
1 TTTTTTATTTGTTT
15351487 CTTTTATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 18 0.60
20 12 0.40
ACGTcount: A:0.09, C:0.04, G:0.06, T:0.81
Consensus pattern (20 bp):
TTTTTTATTTGTTTTTTATC
Found at i:15351491 original size:16 final size:15
Alignment explanation
Indices: 15351420--15351499 Score: 67
Period size: 16 Copynumber: 5.2 Consensus size: 15
15351410 ATTTCACTTC
*
15351420 TTTTTATTTTCTTGT
1 TTTTTATTTTATTGT
15351435 TTTCTTATTTT-TT-T
1 TTT-TTATTTTATTGT
15351449 TTATCTT-TTTTATTTGT
1 TT-T-TTATTTTA-TTGT
15351466 TTTTTATTTTATTGT
1 TTTTTATTTTATTGT
* *
15351481 TTGTTTCTTTTATTAT
1 TT-TTTATTTTATTGT
15351497 TTT
1 TTT
15351500 GATTATTCAT
Statistics
Matches: 56, Mismatches: 2, Indels: 14
0.78 0.03 0.19
Matches are distributed among these distances:
14 7 0.12
15 18 0.32
16 28 0.50
17 3 0.05
ACGTcount: A:0.10, C:0.05, G:0.05, T:0.80
Consensus pattern (15 bp):
TTTTTATTTTATTGT
Found at i:15351514 original size:20 final size:20
Alignment explanation
Indices: 15351489--15351534 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
15351479 GTTTGTTTCT
15351489 TTTATTATTTTGATTATTCA
1 TTTATTATTTTGATTATTCA
15351509 TTTATTATTTTGATTATTCA
1 TTTATTATTTTGATTATTCA
15351529 TTTATT
1 TTTATT
15351535 TATATTTAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.67
Consensus pattern (20 bp):
TTTATTATTTTGATTATTCA
Found at i:15351562 original size:18 final size:19
Alignment explanation
Indices: 15351525--15351564 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
15351515 ATTTTGATTA
*
15351525 TTCATTTATTTATATTTAG
1 TTCATTTATGTATATTTAG
15351544 TTCATTTATGTAT-TTTAG
1 TTCATTTATGTATATTTAG
15351562 TTC
1 TTC
15351565 GTTTGATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.23, C:0.07, G:0.07, T:0.62
Consensus pattern (19 bp):
TTCATTTATGTATATTTAG
Found at i:15353487 original size:6 final size:6
Alignment explanation
Indices: 15353478--15353536 Score: 57
Period size: 6 Copynumber: 9.3 Consensus size: 6
15353468 GGTTTTAAGA
* *
15353478 TTTTAT TTTTA- TTTTAT TTTTGATT TTTTAT TTGTAT TTTGAT TGTTTGAT
1 TTTTAT TTTTAT TTTTAT TTTT-A-T TTTTAT TTTTAT TTTTAT T-TTT-AT
15353529 TTTTAT TT
1 TTTTAT TT
15353537 ATTTATTGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
5 5 0.11
6 24 0.55
7 7 0.16
8 8 0.18
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:15353515 original size:20 final size:19
Alignment explanation
Indices: 15353483--15353536 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 19
15353473 TAAGATTTTA
15353483 TTTTTATTTTATTTTTGAT
1 TTTTTATTTTATTTTTGAT
15353502 TTTTTATTTGTA-TTTTGAT
1 TTTTTATTT-TATTTTTGAT
*
15353521 TGTTTGATTTTTATTT
1 T-TTTTA-TTTTATTT
15353537 ATTTATTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 17 0.57
20 8 0.27
21 5 0.17
ACGTcount: A:0.15, C:0.00, G:0.09, T:0.76
Consensus pattern (19 bp):
TTTTTATTTTATTTTTGAT
Found at i:15354334 original size:14 final size:14
Alignment explanation
Indices: 15354315--15354356 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
15354305 CTACTTTTGA
15354315 TTTATTTATTTATT
1 TTTATTTATTTATT
15354329 TTTATTT-TATTATT
1 TTTATTTAT-TTATT
*
15354343 TTGA-TTATTTATT
1 TTTATTTATTTATT
15354356 T
1 T
15354357 ATTTATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 9 0.36
14 16 0.64
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.76
Consensus pattern (14 bp):
TTTATTTATTTATT
Found at i:15360272 original size:21 final size:23
Alignment explanation
Indices: 15360248--15360304 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 23
15360238 CCTCCTTTTG
15360248 TTCCTTCTTTTC-CTTTTCTT-T
1 TTCCTTCTTTTCTCTTTTCTTGT
* *
15360269 TTCCTACTTTTCATTTTTTTCTTGT
1 TTCCTTCTTTTC--TCTTTTCTTGT
15360294 TTCCTTCTTTT
1 TTCCTTCTTTT
15360305 GTCCTCTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 11 0.38
24 7 0.24
25 11 0.38
ACGTcount: A:0.04, C:0.25, G:0.02, T:0.70
Consensus pattern (23 bp):
TTCCTTCTTTTCTCTTTTCTTGT
Found at i:15362776 original size:21 final size:21
Alignment explanation
Indices: 15362751--15362793 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
15362741 TTTTTGCCTT
15362751 ACTCAACTTCAATACCAATTG
1 ACTCAACTTCAATACCAATTG
15362772 ACTCAACTTCAATACCAATTG
1 ACTCAACTTCAATACCAATTG
15362793 A
1 A
15362794 TGCCATGACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.28, G:0.05, T:0.28
Consensus pattern (21 bp):
ACTCAACTTCAATACCAATTG
Found at i:15366699 original size:23 final size:23
Alignment explanation
Indices: 15366673--15366716 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
15366663 AACTTACGTT
15366673 AAGTTATTTAAATAA-AATTTATG
1 AAGTTATTTAAA-AATAATTTATG
*
15366696 AAGTTTTTTAAAAATAATTTA
1 AAGTTATTTAAAAATAATTTA
15366717 ATCAAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (23 bp):
AAGTTATTTAAAAATAATTTATG
Found at i:15368499 original size:9 final size:9
Alignment explanation
Indices: 15368450--15368542 Score: 60
Period size: 9 Copynumber: 10.0 Consensus size: 9
15368440 TAAAAATTCA
15368450 AAAATTTTT
1 AAAATTTTT
* *
15368459 AGAACTTTT
1 AAAATTTTT
*
15368468 AAAATTTTA
1 AAAATTTTT
* **
15368477 AAAGATATAA
1 AAA-ATTTTT
*
15368487 AAAATTTTG
1 AAAATTTTT
* * *
15368496 AAAAGGTCTA
1 AAAA-TTTTT
15368506 AAAATTTTTT
1 AAAA-TTTTT
*
15368516 AAAATTTCT
1 AAAATTTTT
15368525 AAAATTTTT
1 AAAATTTTT
15368534 AAAATTTTT
1 AAAATTTTT
15368543 TGAAAAATTA
Statistics
Matches: 63, Mismatches: 19, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
9 44 0.70
10 19 0.30
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.44
Consensus pattern (9 bp):
AAAATTTTT
Found at i:15368507 original size:20 final size:19
Alignment explanation
Indices: 15368468--15368519 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
15368458 TAGAACTTTT
15368468 AAAATTTTAAAAGATATAA
1 AAAATTTTAAAAGATATAA
* *
15368487 AAAATTTTGAAAAGGTCTAA
1 AAAATTTT-AAAAGATATAA
*
15368507 AAATTTTTTAAAA
1 AAA-ATTTTAAAA
15368520 TTTCTAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 8 0.29
20 16 0.57
21 4 0.14
ACGTcount: A:0.56, C:0.02, G:0.08, T:0.35
Consensus pattern (19 bp):
AAAATTTTAAAAGATATAA
Found at i:15368660 original size:8 final size:8
Alignment explanation
Indices: 15368545--15368631 Score: 54
Period size: 8 Copynumber: 10.8 Consensus size: 8
15368535 AAATTTTTTG
15368545 AAAAATTA
1 AAAAATTA
*
15368553 AATAAATTC
1 AA-AAATTA
*
15368562 GAAAATCTA
1 AAAAAT-TA
* *
15368571 AAACATTCT
1 AAAAATT-A
*
15368580 AAAAATTC
1 AAAAATTA
15368588 AAAAATTA
1 AAAAATTA
15368596 CAAAAATT-
1 -AAAAATTA
15368604 AAAAATT-
1 AAAAATTA
*
15368611 -ATAATTA
1 AAAAATTA
*
15368618 TAAAATTA
1 AAAAATTA
15368626 AAAAAT
1 AAAAAT
15368632 ATTTAAAAAT
Statistics
Matches: 61, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
6 5 0.08
7 7 0.11
8 25 0.41
9 24 0.39
ACGTcount: A:0.63, C:0.07, G:0.01, T:0.29
Consensus pattern (8 bp):
AAAAATTA
Found at i:15368777 original size:28 final size:29
Alignment explanation
Indices: 15368745--15368808 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
15368735 AATATATATA
*
15368745 TTTTTTT-ATTTTA-AATATT-TTAAAGTT
1 TTTTTTTAATTTTATAAT-TTATTAAAATT
15368772 TTTTTTTAATTTTATAATTTATTAAAATT
1 TTTTTTTAATTTTATAATTTATTAAAATT
*
15368801 TATTTTTA
1 TTTTTTTA
15368809 TTAAAATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
27 7 0.22
28 8 0.25
29 17 0.53
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (29 bp):
TTTTTTTAATTTTATAATTTATTAAAATT
Found at i:15368850 original size:16 final size:16
Alignment explanation
Indices: 15368804--15368843 Score: 71
Period size: 16 Copynumber: 2.4 Consensus size: 16
15368794 TAAAATTTAT
15368804 TTTTATTAAAATTTTCA
1 TTTT-TTAAAATTTTCA
15368821 TTTTTTAAAATTTTCA
1 TTTTTTAAAATTTTCA
15368837 TTTTTTA
1 TTTTTTA
15368844 TTTTTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 19 0.83
17 4 0.17
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTTTTAAAATTTTCA
Found at i:15368859 original size:16 final size:17
Alignment explanation
Indices: 15368793--15368842 Score: 70
Period size: 16 Copynumber: 3.1 Consensus size: 17
15368783 TTATAATTTA
15368793 TTAAAA-TTT-ATTTTT
1 TTAAAATTTTCATTTTT
15368808 ATTAAAATTTTCA-TTTT
1 -TTAAAATTTTCATTTTT
15368825 TTAAAATTTTCATTTTT
1 TTAAAATTTTCATTTTT
15368842 T
1 T
15368843 ATTTTTTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
16 18 0.58
17 12 0.39
18 1 0.03
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (17 bp):
TTAAAATTTTCATTTTT
Found at i:15368866 original size:24 final size:24
Alignment explanation
Indices: 15368821--15368866 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
15368811 AAAATTTTCA
* **
15368821 TTTTTTAAAATTTTCATTTTTTAT
1 TTTTTTAAAATTTTAAGATTTTAT
*
15368845 TTTTTTTAAATTTTAAGATTTT
1 TTTTTTAAAATTTTAAGATTTT
15368867 CTAAAATTTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (24 bp):
TTTTTTAAAATTTTAAGATTTTAT
Found at i:15368944 original size:8 final size:9
Alignment explanation
Indices: 15368923--15369004 Score: 67
Period size: 9 Copynumber: 8.7 Consensus size: 9
15368913 TTTAAAGCCT
15368923 TTTTTAGAA
1 TTTTTAGAA
15368932 TTTTTAGAA
1 TTTTTAGAA
15368941 TTTTTTCA-AA
1 -TTTTT-AGAA
15368951 TTTTTAGAAA
1 TTTTTAG-AA
* *
15368961 TTTTGAAAAA
1 TTTT-TAGAA
* *
15368971 GTTTTAAAA
1 TTTTTAGAA
15368980 TTTTTTAGAA
1 -TTTTTAGAA
15368990 TTTTTAGAA
1 TTTTTAGAA
*
15368999 ATTTTA
1 TTTTTA
15369005 TTTTAATACT
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
8 1 0.02
9 32 0.53
10 25 0.42
11 2 0.03
ACGTcount: A:0.37, C:0.01, G:0.09, T:0.54
Consensus pattern (9 bp):
TTTTTAGAA
Found at i:15368946 original size:19 final size:20
Alignment explanation
Indices: 15368922--15369003 Score: 98
Period size: 19 Copynumber: 4.2 Consensus size: 20
15368912 TTTTAAAGCC
15368922 TTTTTTAGAATTTTTAG-AA
1 TTTTTTAGAATTTTTAGAAA
15368941 TTTTTTCA-AATTTTTAGAAA
1 TTTTTT-AGAATTTTTAGAAA
** * *
15368961 TTTTGAAAAAGTTTTA-AAA
1 TTTTTTAGAATTTTTAGAAA
15368980 TTTTTTAGAATTTTTAGAAA
1 TTTTTTAGAATTTTTAGAAA
15369000 TTTT
1 TTTT
15369004 ATTTTAATAC
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
19 31 0.60
20 21 0.40
ACGTcount: A:0.35, C:0.01, G:0.09, T:0.55
Consensus pattern (20 bp):
TTTTTTAGAATTTTTAGAAA
Found at i:15369945 original size:233 final size:225
Alignment explanation
Indices: 15369706--15372100 Score: 998
Period size: 233 Copynumber: 10.4 Consensus size: 225
15369696 ACATAACAAC
* * *
15369706 ATATTATTGTAACACAAATAATTATATTGATAATGTAAAATTTTAATTAATTATTGTTTTATAAA
1 ATATTATTATAACATAAATAATTATATTGACAATGTAAAATTTTAATTAATTATTGTTTTATAAA
* * * ** * ***
15369771 TATCTAAAGAAAATAGCTAAAAATTAAAAAATAAATTAGTAACATAAACAAAAGAAAACAAACAC
66 TATAT-AAGAAAATAACTAAAAAATAAAAAATAAATT-GTAATGTAAACAAATG-AAA-AAATGT
*
15369836 AAAATTAATATCATTTGGCATAAAATTGA-TAAGAAGTATTGTAACACATTAATAAAGAATTATG
127 AAAATTAATATCATTTGG-ATAAAA-TGAGTAAGAAGTATTGTAACACATTAA-AAAAAATTATG
* *
15369900 ACAATTTTAAACATAACATAAAGTAAAAACAACCTTAAG
189 ACAATTTTAAACATAATAAAAAGTAAAAACAA--TTAAG
* * * ** * **
15369939 ATATTATTGTAA-AGTAAACAATTATGTTGACAAAATAAATTTTTAATTAATTATTGATCCTATA
1 ATATTATTATAACA-TAAATAATTATATTGACAATGTAAAATTTTAATTAATTATTG-TTTTATA
*
15370003 AATATATAAGAAAAATAACTAAAAAATAAAAAATAAATTGATAGTGTAAACAAATG-AAAAATGT
64 AATATATAAG-AAAATAACTAAAAAATAAAAAATAAATTG-TAATGTAAACAAATGAAAAAATGT
* * * ** * * *
15370067 AAAATTAGTATCATTT-GATGTTAAATGAGTAAAAAGTATCATAATACTCACTAAAAATAAACTA
127 AAAATTAATATCATTTGGA--TAAAATGAGTAAGAAGTATTGT-A-ACACATTAAAAA-AAATTA
* * * * * *
15370131 TGATAATTCTAAACATAATAAAAAATAAGAGCAATTGAAAAA
187 TGACAATTTTAAACATAATAAAAAGTAAAAACAATT---AAG
* *
15370173 ATATAGTATTATAACATAAATAATTATGA-AGACAATGTAAAATTTTAATTAATTATT-TTTTGT
1 ATAT--TATTATAACATAAATAATTAT-ATTGACAATGTAAAATTTTAATTAATTATTGTTTTAT
* * * *
15370236 --ATATTTGAAGAAAATAGCTAAAAAATAAAAAATAAATTGGTAATGTAAATAAGTGAGAAGAAA
63 AAATATAT-AAGAAAATAACTAAAAAATAAAAAATAAATT-GTAATGTAAACAAATGA-AA-AAA
* * * * *
15370299 TGTAATATTAATATCATTTGGAGGAAACTGAGTAAGAAGTAATGTAACATATTAAGAAAAAATTA
124 TGTAAAATTAATATCATTTGGA-TAAAATGAGTAAGAAGTATTGTAACACATTAA-AAAAAATTA
* ** *
15370364 TGACAATTTTAAATATAATGGAAAGTAAAAACAATAAAAAAAAG
187 TGACAATTTTAAACATAATAAAAAGTAAAAACAAT-----TAAG
* * * * * * *
15370408 ATATTATTATACCATAAATAATTATGTTGATAATTTAAAGTTTTAACTAATTATTATTATT-TAA
1 ATATTATTATAACATAAATAATTATATTGACAATGTAAAATTTTAATTAATTATTGTT-TTATAA
*
15370472 ATATATAAGAAAAGTAACTAAAAATTGAAAAAAATAAA---TAACT-TAAA-AAAGTGAGAAAAA
65 ATATATAAGAAAA-TAACTAAAAAAT--AAAAAATAAATTGTAA-TGTAAACAAA-TGA-AAAAA
* * * * * ** * *
15370532 -ATAAAATTAGTATAATTT-GATGTAAAAT-AGGTAAAAAGTGTCATAACACACTAAAAAAAGTT
124 TGTAAAATTAATATCATTTGGA--TAAAATGA-GTAAGAAGTATTGTAACACATTAAAAAAAATT
* * * * **
15370594 ATTAAAATTCTAAACGTAACT-AAAAGTAAGAATAATCATAAAAAG
186 ATGACAATTTTAAACATAA-TAAAAAGT-A-AA-AA-CA-ATTAAG
* * * * ** *
15370639 AAATTATTGTAATATAAATAATTAAATT-ACTAACATAAAATTTTAATT-A-T-TTATTTT-TAA
1 ATATTATTATAACATAAATAATTATATTGAC-AATGTAAAATTTTAATTAATTATTGTTTTATAA
* ** * * * ** * *
15370699 ATATATAACAAAAATAGTTAAAAATTAAAAAACATATTAACAATGTAAACAAGTGAGAAAAAATA
65 ATATATAA-GAAAATAACTAAAAAATAAAAAATAAATT-GTAATGTAAACAAAT--GAAAAAATG
* * * * * * * * * * *
15370764 TAAAATTAGTATCATTTGATATAAAATAAGTAAAAATTGTTATAATATACTAAAAAAGAGTTATG
126 TAAAATTAATATCATTTG-GATAAAATGAGTAAGAAGTATTGTAACACATTAAAAAA-AATTATG
** * * *
15370829 ACGGTTTTAAACATAATAAAAATTACCAACAATCATAATAAT
189 ACAATTTTAAACATAATAAAAAGTA--AA-AA-CA-ATTAAG
* ** *
15370871 ATATTATT-TATA-GTAAATAATTATATTGTTAATTTAAAATTTTAATTAATTATTAG--TT-TA
1 ATATTATTATA-ACATAAATAATTATATTGACAATGTAAAATTTTAATTAATTATT-GTTTTATA
* * * * * * *
15370931 AA-ATATAA-AAAATATCT-AAAAAT-TAAAA-AAATGGTAACT-TAAGCAAGTAAGAACAAATT
64 AATATATAAGAAAATAACTAAAAAATAAAAAATAAATTGTAA-TGTAAACAA--ATGAAAAAATG
* * * * * * * **
15370990 TTAAATTAATATCATTTGGTGTAAATTG-GATAAAAAGTGTAGTAATACGTAAAAAAAAAAAGAG
126 TAAAATTAATATCATTTGG-ATAAAATGAG-TAAGAAGTATTGTAACAC---ATTAAAAAAA-A-
* * *
15371054 TTATGGCAATTTTAAATATTATGAAAAA-TAAAAACAATCCTAAG
184 TTATGACAATTTTAAACATAAT-AAAAAGTAAAAACAAT--TAAG
* *
15371098 A-ATATATTACTGTAA-AGTAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTTCT
1 ATAT-TATTA---TAACA-TAAATAATTATATTGACAATGTAAAATTTTAATTAATTATTGTT-T
* * * * * *
15371161 TATAAATATATAAGAAAAATGACT--AAAATTAAAAATCAAATTAATAAAGTAAACAAGTG-AGA
60 TATAAATATATAAG-AAAATAACTAAAAAATAAAAAAT-AAATT-GTAATGTAAACAAATGAAAA
* * * * * * * * * * *
15371223 AGTAGCCTAAAATTAGTATTATTTGAAGTAAAATGGGTAAGAAATATCGCAAAATACTAAAAACA
122 AAT-G--TAAAATTAATATCATTTGGA-TAAAATGAGTAAGAAGTATTGTAACACATTAAAAA-A
* * * *
15371288 AGTTATAACAA--TT---C----T-AAACGT--AAATAATT---
182 AATTATGACAATTTTAAACATAATAAAAAGTAAAAACAATTAAG
* ** * * * *
15371317 AT-TT-TTATAACGTAAATAATTATAACGACAATATAAAATTTTAATTAATTATTGTTATGTATA
1 ATATTATTATAACATAAATAATTATATTGACAATGTAAAATTTTAATTAATTATTGTTTTATAAA
* * * * ** *
15371380 TATATAAGGGAAATAGCTAGAAATTAAAAAATAAATTG--GCGT---TAAATG-----A-GTAAA
66 TATATAA-GAAAATAACTAAAAAATAAAAAATAAATTGTAATGTAAACAAATGAAAAAATGTAAA
* * * * *
15371434 ATTAGTATCATTTGGCATAAAATGGGTAAGAAGTATTGTAACTCATTAATAAAGAATTATCACAA
130 ATTAATATCATTTGG-ATAAAATGAGTAAGAAGTATTGTAACACATTAA-AAAAAATTATGACAA
* * * * *
15371499 TTCTAAATATAACATAAAGTAAAAACAACCTGAAGAAG
193 TTTTAAACATAATAAAAAGTAAAAACAA--T---TAAG
* * * * *
15371537 ATATTATTATAA-AGTAAATAATTATGTTGATAA---AAAAATTTAATGAATTATTGTTCTTGTA
1 ATATTATTATAACA-TAAATAATTATATTGACAATGTAAAATTTTAATTAATTATTGTT-TTATA
* *
15371598 AATATATAAGAAAAATAAC--AAAAAT-TAAAATAAATTGATAATGTAAACAAATG-AGAAATGT
64 AATATATAAG-AAAATAACTAAAAAATAAAAAATAAATTG-TAATGTAAACAAATGAAAAAATGT
* * * * **
15371659 AAAATTAATATCATTTGGTGTTAAATGAGTAA-AATGTATCGTAACACACACTAAAAAAGAACCA
127 AAAATTAATATCATTTGG-ATAAAATGAGTAAGAA-GTATTGT-A-ACACATTAAAAAA-AATTA
* * * * *
15371723 TGATAATTCTAAACATAATGAAAA-TAAGAACAATTTTTAAA
187 TGACAATTTTAAACATAATAAAAAGTAAAAACAA---TTAAG
* * * *
15371764 ATATAGTATTATAATATAAATAATTATGA-TGATAATGTAAAATTTTAATTAACTATT-TTTTGT
1 ATAT--TATTATAACATAAATAATTAT-ATTGACAATGTAAAATTTTAATTAATTATTGTTTTAT
* * *
15371827 ATATATA-AAGAAAATAGC-AAAAAATAAAAAAAATAAATTGGTAATATAAACAAATGAGAAAAA
63 AAATATATAAGAAAATAACTAAAAAAT--AAAAAATAAATT-GTAATGTAAACAAAT--GAAAAA
** * * *
15371890 ATGTAAAATTAATATCATTTGGAGTAAAATGAGTAAGAAGTATCATAACATATTAAGGAAAAGTT
123 ATGTAAAATTAATATCATTTGGA-TAAAATGAGTAAGAAGTATTGTAACACATTAA-AAAAAATT
** ** * *
15371955 ATGACAATTTTAAATGTAATGGAAAGTAAGAACAAATGTGAAAAA
186 ATGACAATTTTAAACATAATAAAAAGTAAAAAC-AAT-T---AAG
* ** * ** * * *
15372000 ATATTATTATACCATAAATAA-TATGGTGATAATGTAAGGTTTTAACTAATTATTATTTTTTAAA
1 ATATTATTATAACATAAATAATTATATTGACAATGTAAAATTTTAATTAATTATTGTTTTATAAA
* * *
15372064 TATATATGAAAAACAACTAAAAATTGAAAAAATAAAT
66 TATATAAG-AAAATAACTAAAAAAT-AAAAAATAAAT
15372101 AACATAAAAA
Statistics
Matches: 1643, Mismatches: 334, Indels: 367
0.70 0.14 0.16
Matches are distributed among these distances:
200 51 0.03
201 4 0.00
202 2 0.00
208 4 0.00
210 4 0.00
211 2 0.00
212 5 0.00
213 17 0.01
214 49 0.03
215 10 0.01
217 14 0.01
218 5 0.00
219 23 0.01
220 22 0.01
221 2 0.00
222 22 0.01
223 5 0.00
224 6 0.00
225 13 0.01
226 55 0.03
227 47 0.03
228 59 0.04
229 67 0.04
230 81 0.05
231 230 0.14
232 179 0.11
233 248 0.15
234 127 0.08
235 106 0.06
236 97 0.06
237 28 0.02
238 13 0.01
239 4 0.00
240 41 0.02
241 1 0.00
ACGTcount: A:0.52, C:0.06, G:0.10, T:0.32
Consensus pattern (225 bp):
ATATTATTATAACATAAATAATTATATTGACAATGTAAAATTTTAATTAATTATTGTTTTATAAA
TATATAAGAAAATAACTAAAAAATAAAAAATAAATTGTAATGTAAACAAATGAAAAAATGTAAAA
TTAATATCATTTGGATAAAATGAGTAAGAAGTATTGTAACACATTAAAAAAAATTATGACAATTT
TAAACATAATAAAAAGTAAAAACAATTAAG
Found at i:15370659 original size:231 final size:229
Alignment explanation
Indices: 15369244--15371306 Score: 950
Period size: 231 Copynumber: 8.9 Consensus size: 229
15369234 CCCTAAGAAT
* * ** ** *
15369244 ATATTATTGTAATGTAAATAATTATGTTGGCAACATAAAATTTTAATTAATTATTATTTTGTACA
1 ATATTATTATAATATAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTATTTT-TAAA
** * * *
15369309 TATATAAGAAAAATAGTTAAAAATTAAAAAATAAATAAGTAACGTAAAAAAG-CATG---AAA-A
65 TATATAAGAAAAATAACTAAAAATT--AAAA-AAATAAATAACTTAAAAAAGTGA-GAAAAAATA
* * * * * * * * * *
15369369 AAATGAGTATTATTTGGTATAAAATAGATAAAAAAAAAATGTTACAACACACGCTAAGAAATAGT
126 AAATTAGTATCATTTGATGTAAAATAGGT----AAAAAGTATCATAACACA--CTAA-AAAAAGT
* * * * * *
15369434 TATTATAACTCTAAACATATTTAAAAATAAGAACAATCATAAAAA-
184 TATGACAATTCTAAACATAATGAAAAGTAAGAACAATCATAAAAAG
* * * ** *
15369479 A-ACTATTGTAATATAAATAATTAAGTTG-TCAACATAAAATTTTAATTAATTACT-TTTTTAAA
1 ATATTATTATAATATAAATAATTATGTTGAT-AATGTAAAATTTTAATTAATTATTATTTTTAAA
* ** ** ** *
15369541 CATAT---AAAAATAGTTAAAAATTAAAAACATATTGATAA-TGTAATTAAGTGAAAAAAAAAGT
65 TATATAAGAAAAATAACTAAAAATTAAAAA-A-ATAAATAACT-TAAAAAAGTG-AGAAAAAA-T
* * * * * * * * * *
15369602 AAAATTAATAT-AGTTT-AGTGCAAAAT-GCATATAAATTATCATAATATATTAAAAAGAGTTAC
125 AAAATTAGTATCA-TTTGA-TGTAAAATAG-GTAAAAAGTATCATAACACACTAAAAAAAGTTAT
* * * * *
15369664 GACAGTTTTAAACGA-AATGAAAAGTAAAAACAA-CATAACAAC
187 GACAATTCTAAAC-ATAATGAAAAGTAAGAACAATCATAAAAAG
* * * * *
15369706 ATATTATTGTAACACAAATAATTATATTGATAATGTAAAATTTTAATTAATTATTGTTTTATAAA
1 ATATTATTATAATATAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTATTTT-TAAA
* * * * *
15369771 TATCTAA-AGAAAATAGCTAAAAATT-AAAAAATAAATTAGTAACATAAACAAA-AGAAAACAAA
65 TATATAAGA-AAAATAACTAAAAATTAAAAAAAT-AA--A-TAACTTAAA-AAAGTGAGAA-AAA
* * *** * * * ** *
15369833 CACAAAATTAATATCATTTGGCATAAAATTGATAAGAAGTATTGTAACACATTAATAAAGAA-TT
123 -ATAAAATTAGTATCATTTGATGTAAAATAGGTAAAAAGTATCATAACACACTAA-AAA-AAGTT
* * * * *
15369897 ATGACAATTTTAAACATAA-CATAAAGTAAAAACAA-CCT--TAAG
185 ATGACAATTCTAAACATAATGA-AAAGTAAGAACAATCATAAAAAG
* * * ** * * *
15369939 ATATTATTGTAA-AGTAAACAATTATGTTGACAAAATAAATTTTTAATTAATTATTGATCCTATA
1 ATATTATTATAATA-TAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATT-AT-TTTTA
* * *
15370003 AATATATAAGAAAAATAACTAAAAAAT-AAAAAATAAATTGATAGTGTAAACAAA-TGA-AAAAT
63 AATATATAAGAAAAATAACTAAAAATTAAAAAAATAAA-T-A-ACT-TAAA-AAAGTGAGAAAAA
* * * **
15370065 GTAAAATTAGTATCATTTGATGTTAAAT-GAGTAAAAAGTATCATAATACTCACTAAAAATAAAC
123 ATAAAATTAGTATCATTTGATGTAAAATAG-GTAAAAAGTATCAT-A-ACACACTAAAAA-AAGT
* * * * * *
15370129 TATGATAATTCTAAACATAATAAAAAATAAGAGCAATTGA-AAAAAT
184 TATGACAATTCTAAACATAATGAAAAGTAAGAACAA-TCATAAAAAG
* * ** *
15370175 ATAGTATTATAACATAAATAATTATGAAGACAATGTAAAATTTTAATTAATTATT-TTTTGT--A
1 ATATTATTATAATATAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTATTTT-TAAA
* * * *
15370237 TATTTGAAG-AAAATAGCTAAAAAAT-AAAAAATAAATTGGTAA-TGTAAATAAGTGAGAAGAAA
65 TATAT-AAGAAAAATAACTAAAAATTAAAAAAATAAA----TAACT-TAAAAAAGTGAGAA-AAA
* * * * * * * * * *
15370299 TGTAATATTAATATCATTTGGA-GGAAACT-GAGTAAGAAGTAAT-GTAACATATTAAGAAAAAA
123 -ATAAAATTAGTATCATTT-GATGTAAAATAG-GTAAAAAGT-ATCATAACACACTAA-AAAAAG
* * * * * *
15370361 TTATGACAATTTTAAATATAATGGAAAGTAAAAACAATAAAAAAAAG
183 TTATGACAATTCTAAACATAATGAAAAGTAAGAACAATCATAAAAAG
** * * *
15370408 ATATTATTATACCATAAATAATTATGTTGATAATTTAAAGTTTTAACTAATTATTATTATTTAAA
1 ATATTATTATAATATAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTATT-TTTAAA
*
15370473 TATATAAGAAAAGTAACTAAAAATTGAAAAAAATAAATAACTTAAAAAAGTGAGAAAAAATAAAA
65 TATATAAGAAAAATAACTAAAAATT-AAAAAAATAAATAACTTAAAAAAGTGAGAAAAAATAAAA
* * * *
15370538 TTAGTATAATTTGATGTAAAATAGGTAAAAAGTGTCATAACACACTAAAAAAAGTTATTAAAATT
129 TTAGTATCATTTGATGTAAAATAGGTAAAAAGTATCATAACACACTAAAAAAAGTTATGACAATT
* *
15370603 CTAAACGTAACT-AAAAGTAAGAATAATCATAAAAAG
194 CTAAACATAA-TGAAAAGTAAGAACAATCATAAAAAG
* * ** **
15370639 AAATTATTGTAATATAAATAATTAAATT-ACTAACATAAAATTTTAATT-A-T-TTATTTTTAAA
1 ATATTATTATAATATAAATAATTATGTTGA-TAATGTAAAATTTTAATTAATTATTATTTTTAAA
* ** * *
15370700 TATATAACAAAAATAGTTAAAAATTAAAAAACAT-ATTAACAATGTAAACAAGTGAGAAAAAATA
65 TATATAAGAAAAATAACTAAAAATTAAAAAA-ATAAATAAC--T-TAAAAAAGTGAG-AAAAA-A
* * * * * * *
15370764 TAAAATTAGTATCATTTGATATAAAATAAGTAAAAATTGTTATAATATACTAAAAAAGAGTTATG
124 TAAAATTAGTATCATTTGATGTAAAATAGGTAAAAAGTATCATAACACACTAAAAAA-AGTTATG
** * * * ** * *
15370829 ACGGTTTTAAACATAATAAAAATTACCAACAATCATAATAAT
188 ACAATTCTAAACATAATGAAAAGTAAGAACAATCATAAAAAG
* * * *
15370871 ATATTATT-T-ATAGTAAATAATTATATTGTTAATTTAAAATTTTAATTAATTATTA-GTTTAAA
1 ATATTATTATAATA-TAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTATTTTTAAA
* ** ** * * *
15370933 -ATAT-A-AAAAATATCTAAAAATTAAAAAAAT-GGTAACTTAAGCAAGTAAGAACAAATTTTAA
65 TATATAAGAAAAATAACTAAAAATTAAAAAAATAAATAACTTAAAAAAGTGAGAA-AAA-ATAAA
* * * * * **
15370994 ATTAATATCATTTGGTGT-AAATTGGATAAAAAGTGT-AGTAATACGTAAAAAAAAAAAGAGTTA
128 ATTAGTATCATTTGATGTAAAATAGG-TAAAAAGTATCA-T-A-AC--ACACTAAAAAA-AGTTA
* * * * * * * * *
15371057 TGGCAATTTTAAATATTATGAAAAATAAAAACAATCCTAAGAAT
186 TGACAATTCTAAACATAATGAAAAGTAAGAACAATCATAAAAAG
* * *
15371101 ATATTACTGTAA-AGTAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTGTTCTTATA
1 ATATTATTATAATA-TAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTATT-TT-TA
* * ** * **
15371165 AATATATAAGAAAAATGACT-AAAATTAAAAATCAAATTAATAAAGTAAACAAGTGAGAAGTAGC
63 AATATATAAGAAAAATAACTAAAAATT-AAAA--AAATAAATAACTTAAAAAAGTGAGAA--AAA
* * * * ** * *
15371229 CTAAAATTAGTATTATTTGAAGTAAAATGGGTAAGAAA-TATCGCAAAATACTAAAAACAAGTTA
123 ATAAAATTAGTATCATTTGATGTAAAATAGGTAA-AAAGTATCATAACACACTAAAAA-AAGTTA
*
15371293 TAACAATTCTAAAC
186 TGACAATTCTAAAC
15371307 GTAAATAATT
Statistics
Matches: 1415, Mismatches: 295, Indels: 235
0.73 0.15 0.12
Matches are distributed among these distances:
225 8 0.01
226 61 0.04
227 67 0.05
228 65 0.05
229 40 0.03
230 107 0.08
231 239 0.17
232 151 0.11
233 223 0.16
234 193 0.14
235 85 0.06
236 99 0.07
237 14 0.01
238 11 0.01
239 5 0.00
240 37 0.03
241 10 0.01
ACGTcount: A:0.53, C:0.06, G:0.09, T:0.32
Consensus pattern (229 bp):
ATATTATTATAATATAAATAATTATGTTGATAATGTAAAATTTTAATTAATTATTATTTTTAAAT
ATATAAGAAAAATAACTAAAAATTAAAAAAATAAATAACTTAAAAAAGTGAGAAAAAATAAAATT
AGTATCATTTGATGTAAAATAGGTAAAAAGTATCATAACACACTAAAAAAAGTTATGACAATTCT
AAACATAATGAAAAGTAAGAACAATCATAAAAAG
Found at i:15370932 original size:24 final size:25
Alignment explanation
Indices: 15370888--15370934 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
15370878 TTATAGTAAA
*
15370888 TAATTATATTGTTAATTTAAAATTT
1 TAATTATATTATTAATTTAAAATTT
*
15370913 TAATTA-ATTATTAGTTTAAAAT
1 TAATTATATTATTAATTTAAAAT
15370935 ATAAAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (25 bp):
TAATTATATTATTAATTTAAAATTT
Found at i:15372540 original size:199 final size:199
Alignment explanation
Indices: 15372176--15372581 Score: 751
Period size: 199 Copynumber: 2.0 Consensus size: 199
15372166 AAAAGTTATT
15372176 ACAATTATAAACATAATTAAAAGTAAGATAATCTTAAAAAGAAATTATTGTAATATAAATAATTA
1 ACAATTATAAACATAATTAAAAGTAAGATAATCTTAAAAAGAAATTATTGTAATATAAATAATTA
*
15372241 AGTTACTATCGTAAAATTTTAATTATTTATTTTTAAATATATAACAAAAAAAGTTAAAAAATTAA
66 AGTTACTATCGTAAAATTTTAATTAATTATTTTTAAATATATAACAAAAAAAGTTAAAAAATTAA
*
15372306 AAAATATATTACCCATGTAAACAAGTGAGAAAAAATATAAGATTAGTATCATTTGGCATAAAATA
131 AAAATATATTACCCATGTAAACAAGTGAGAAAAAATATAAAATTAGTATCATTTGGCATAAAATA
15372371 AGTA
196 AGTA
* *
15372375 ACAATTCTAAACATAATTAAAAGTAAGATAATCTTAAAAAGAAATTATTGTATTATAAATAATTA
1 ACAATTATAAACATAATTAAAAGTAAGATAATCTTAAAAAGAAATTATTGTAATATAAATAATTA
15372440 AGTTACTATCGTAAAATTTTAATTAATTATTTTTAAATATATAACAAAAAAAGTT-AAAAATTAA
66 AGTTACTATCGTAAAATTTTAATTAATTATTTTTAAATATATAACAAAAAAAGTTAAAAAATTAA
15372504 AAAATATATTACCCATGTAAACAAGTGAGAAAAAAATATAAAATTAGTATCATTTGGCATAAAAT
131 AAAATATATTACCCATGTAAACAAGTGAG-AAAAAATATAAAATTAGTATCATTTGGCATAAAAT
15372569 AAGTA
195 AAGTA
*
15372574 AAAATTAT
1 ACAATTAT
15372582 TATAATAAGC
Statistics
Matches: 200, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
198 38 0.19
199 162 0.81
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.33
Consensus pattern (199 bp):
ACAATTATAAACATAATTAAAAGTAAGATAATCTTAAAAAGAAATTATTGTAATATAAATAATTA
AGTTACTATCGTAAAATTTTAATTAATTATTTTTAAATATATAACAAAAAAAGTTAAAAAATTAA
AAAATATATTACCCATGTAAACAAGTGAGAAAAAATATAAAATTAGTATCATTTGGCATAAAATA
AGTA
Found at i:15372687 original size:22 final size:21
Alignment explanation
Indices: 15372642--15372685 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
15372632 GAGCAATCAT
*
15372642 AATAATATATTATTTAATTTA
1 AATAATATATTATTCAATTTA
15372663 AATAATTATATTA-TCAATTTA
1 AATAA-TATATTATTCAATTTA
15372684 AA
1 AA
15372686 ATTTAATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
AATAATATATTATTCAATTTA
Done.